Psyllid ID: psy15216
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 2602 | 2.2.26 [Sep-21-2011] | |||||||
| A4G782 | 620 | Chaperone protein HscA ho | no | N/A | 0.196 | 0.824 | 0.589 | 1e-169 | |
| A6SXE9 | 620 | Chaperone protein HscA ho | no | N/A | 0.196 | 0.824 | 0.593 | 1e-169 | |
| Q473J2 | 621 | Chaperone protein HscA ho | no | N/A | 0.196 | 0.822 | 0.571 | 1e-163 | |
| A4SYY9 | 621 | Chaperone protein HscA ho | no | N/A | 0.196 | 0.822 | 0.564 | 1e-161 | |
| Q0KCG7 | 621 | Chaperone protein HscA ho | no | N/A | 0.196 | 0.822 | 0.562 | 1e-161 | |
| Q1H361 | 405 | Cysteine desulfurase OS=M | yes | N/A | 0.141 | 0.908 | 0.724 | 1e-160 | |
| B2U8U5 | 621 | Chaperone protein HscA ho | no | N/A | 0.196 | 0.822 | 0.556 | 1e-160 | |
| Q1LPL1 | 621 | Chaperone protein HscA ho | no | N/A | 0.196 | 0.822 | 0.556 | 1e-160 | |
| B3R475 | 621 | Chaperone protein HscA ho | no | N/A | 0.196 | 0.822 | 0.562 | 1e-160 | |
| Q8Y0L9 | 621 | Chaperone protein HscA ho | no | N/A | 0.196 | 0.822 | 0.552 | 1e-159 |
| >sp|A4G782|HSCA_HERAR Chaperone protein HscA homolog OS=Herminiimonas arsenicoxydans GN=hscA PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 598 bits (1541), Expect = e-169, Method: Composition-based stats.
Identities = 303/514 (58%), Positives = 395/514 (76%), Gaps = 3/514 (0%)
Query: 620 MALLQISEPDDISVKNKC-VSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYL 678
MALLQI+EP + ++ +++GID GTTNSLVA VRN+IPE+L D+ G L+PS+V YL
Sbjct: 1 MALLQIAEPGMSTAPHQHRLAVGIDLGTTNSLVATVRNSIPEILTDEEGRSLLPSVVHYL 60
Query: 679 PDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNIN-TNSFPYDFQNKFGMLHIKTIS 737
+G ++G KA+ QN DPKNTI S+KRF+ R LK+I + PYDF + GM+ +KT++
Sbjct: 61 KNGSAHIGYKAQAAQNTDPKNTIVSVKRFMGRGLKDIAYAENLPYDFLDTPGMVQLKTVA 120
Query: 738 GIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLR 797
G+KSP+E+SA+I TL++ AE+A+ + + GAVITVPAYF+D QRQ TK+AAKLAGLNVLR
Sbjct: 121 GVKSPVEVSAEILATLRQQAEDALGDDLVGAVITVPAYFDDAQRQATKDAAKLAGLNVLR 180
Query: 798 LLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDD 857
LLNEPT+AAIAY LD N EG+FAVYDLGGGTFD+SILK GVF+VLS GGDS LGGDD
Sbjct: 181 LLNEPTAAAIAYGLD-NGSEGVFAVYDLGGGTFDVSILKLTKGVFEVLSTGGDSALGGDD 239
Query: 858 FDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITID 917
FD+ LF WI++ A L LS D ++LM+K+RE KELLS +S ++ L+ + V++T+
Sbjct: 240 FDHRLFCWIIEQAGLAPLSEIDTSVLMVKAREAKELLSSKSETLIDAVLTSGEEVHVTVT 299
Query: 918 MKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTL 977
F +TQHLV +TI + KAL DA L++ D++ V++VGG+TRM HI + V +FF++T
Sbjct: 300 AADFIQMTQHLVTKTITPTKKALRDAGLSVDDVDGVVMVGGATRMPHIRKAVGDFFQSTP 359
Query: 978 LTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTI 1037
L +IDPDK V GAA+QAN L+GNR D++LLLDVIPLSLGIET+GGLVEK+I RN+TI
Sbjct: 360 LANIDPDKVVALGAAVQANLLAGNRAAGDDWLLLDVIPLSLGIETMGGLVEKVIPRNSTI 419
Query: 1038 PCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQV 1097
PC+ + EFTTFKD QTA+A+ +VQGE ELV +C+ LA FELR IPPM AG ARI+VTYQV
Sbjct: 420 PCARAQEFTTFKDGQTALAVHIVQGERELVTDCRSLAKFELRGIPPMAAGAARIRVTYQV 479
Query: 1098 DADGLLSIFAYEKISGKKKFITIKPFYNMNLDEI 1131
DADGLLS+ A E SG + I++KP Y + D+I
Sbjct: 480 DADGLLSVSARELRSGVEASISVKPSYGLADDQI 513
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Chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Has a low intrinsic ATPase activity which is markedly stimulated by HscB. Herminiimonas arsenicoxydans (taxid: 204773) |
| >sp|A6SXE9|HSCA_JANMA Chaperone protein HscA homolog OS=Janthinobacterium sp. (strain Marseille) GN=hscA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 597 bits (1538), Expect = e-169, Method: Composition-based stats.
Identities = 305/514 (59%), Positives = 393/514 (76%), Gaps = 3/514 (0%)
Query: 620 MALLQISEPDDISVKNKC-VSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYL 678
MALLQI+EP + ++ +++GID GTTNSLVA VRN+IPEVL D+ G L+PS+V Y+
Sbjct: 1 MALLQIAEPGMSTAPHQHRLAVGIDLGTTNSLVATVRNSIPEVLTDEEGRALLPSVVHYM 60
Query: 679 PDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNIN-TNSFPYDFQNKFGMLHIKTIS 737
+G +G KA QN DPKNTI+S+KRF+ R LK+I + PYDF + GM+ +KT++
Sbjct: 61 KNGHAQIGYKALAAQNTDPKNTIASVKRFMGRGLKDIAYVENLPYDFLDTPGMVQLKTVA 120
Query: 738 GIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLR 797
G+KSP+EISA+I TL++ AE+A+ + + GAVITVPAYF+D QRQ TK+AAKLAGLNVLR
Sbjct: 121 GVKSPVEISAEILATLRQQAEDALGDELVGAVITVPAYFDDAQRQATKDAAKLAGLNVLR 180
Query: 798 LLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDD 857
LLNEPT+AAIAY LD N EG+FAVYDLGGGTFD+SILK GVF+VLS GGDS LGGDD
Sbjct: 181 LLNEPTAAAIAYGLD-NGSEGVFAVYDLGGGTFDVSILKLTKGVFEVLSTGGDSALGGDD 239
Query: 858 FDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITID 917
FD+ L WI++ A L LS +D+++LM+KSRE KELLS ++ ++ L + V++T+
Sbjct: 240 FDHRLLCWIIEQAKLSPLSDEDLSVLMVKSREAKELLSTKAETHIDAALGSGEEVHLTVT 299
Query: 918 MKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTL 977
F +TQHLV +TI + KAL DA+LT+ D++ V++VGG+TRM HI + V FF+ T
Sbjct: 300 AADFVKMTQHLVAKTITPTKKALRDADLTVDDVDGVVMVGGATRMPHIRKAVGEFFQATP 359
Query: 978 LTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTI 1037
L +IDPDK V GAA+QAN L+GNR D++LLLDVIPLSLGIET+GGLVEK+I RN+TI
Sbjct: 360 LANIDPDKVVALGAAVQANLLAGNRAAGDDWLLLDVIPLSLGIETMGGLVEKVIPRNSTI 419
Query: 1038 PCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQV 1097
PC+ + EFTTFKD QTA+AI +VQGE ELV +C+ LA FELR IPPM AG ARI+VTYQV
Sbjct: 420 PCARAQEFTTFKDGQTAMAIHIVQGERELVSDCRSLARFELRGIPPMAAGAARIRVTYQV 479
Query: 1098 DADGLLSIFAYEKISGKKKFITIKPFYNMNLDEI 1131
DADGLLS+ A E SG + I++KP Y + D+I
Sbjct: 480 DADGLLSVSARELRSGVEASISVKPSYGLADDQI 513
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Chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Has a low intrinsic ATPase activity which is markedly stimulated by HscB. Janthinobacterium sp. (strain Marseille) (taxid: 375286) |
| >sp|Q473J2|HSCA_CUPPJ Chaperone protein HscA homolog OS=Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) GN=hscA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 576 bits (1485), Expect = e-163, Method: Composition-based stats.
Identities = 294/514 (57%), Positives = 381/514 (74%), Gaps = 3/514 (0%)
Query: 620 MALLQISEPD-DISVKNKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYL 678
MALLQISEP + + +++GID GTTNSLVA VRN+IPEVL D+ G L+PS+VRYL
Sbjct: 1 MALLQISEPGMSPAPHQRRLAVGIDLGTTNSLVAAVRNSIPEVLGDERGRALLPSVVRYL 60
Query: 679 PDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNINTNSF-PYDFQNKFGMLHIKTIS 737
PD ++G +A+ DPKNTI S+KRF+ R LK++ N PYDF + GM+ IKT++
Sbjct: 61 PDRTTHIGYRAQDEAVRDPKNTIVSVKRFMGRGLKDVAHNEHSPYDFVDAPGMVQIKTVA 120
Query: 738 GIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLR 797
G+KSP+E+SA+I TL++ AE+++ + + GAVITVPAYF++ QRQ TK+AA+LAGL VLR
Sbjct: 121 GVKSPVEVSAEILATLRQRAEDSLGDDLVGAVITVPAYFDEAQRQATKDAARLAGLEVLR 180
Query: 798 LLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDD 857
LLNEPT+AAIAY LD N EGI+AVYDLGGGTFDISILK GVF+VLS GGDS LGGDD
Sbjct: 181 LLNEPTAAAIAYGLD-NASEGIYAVYDLGGGTFDISILKLTKGVFEVLSTGGDSALGGDD 239
Query: 858 FDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITID 917
FD L WIV+ A L+ LS +D+ +LM+++R KE LS S ++ L +IV++T+
Sbjct: 240 FDQRLLCWIVEQAGLQPLSAQDMRLLMVRARAAKEALSEGDSTVIDAVLDSGEIVHLTLT 299
Query: 918 MKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTL 977
+ F TIT HLV +T+ KAL DA +T ++ V+LVGG+TRM I + V +FF
Sbjct: 300 DEIFDTITAHLVQKTLAPVRKALRDAGVTPDEVQGVVLVGGATRMPAIRKAVGDFFGQPP 359
Query: 978 LTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTI 1037
LT++DPD+ V GAA+QAN L+GN +++LLLDVIPLSLG+ET+GGLVEKII RN+TI
Sbjct: 360 LTNLDPDRVVALGAAMQANLLAGNHAPGEDWLLLDVIPLSLGVETMGGLVEKIIPRNSTI 419
Query: 1038 PCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQV 1097
P + + EFTTFKD QTA+AI V+QGE EL +C+ LA FELR IPPM AG ARI+VTYQV
Sbjct: 420 PVARAQEFTTFKDGQTAMAIHVLQGERELASDCRSLARFELRGIPPMVAGAARIRVTYQV 479
Query: 1098 DADGLLSIFAYEKISGKKKFITIKPFYNMNLDEI 1131
DADGLLS+ A E SG + +T+KP Y + D+I
Sbjct: 480 DADGLLSVTARETHSGVESSVTVKPSYGLADDDI 513
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Chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Has a low intrinsic ATPase activity which is markedly stimulated by HscB. Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) (taxid: 264198) |
| >sp|A4SYY9|HSCA_POLSQ Chaperone protein HscA homolog OS=Polynucleobacter necessarius subsp. asymbioticus (strain DSM 18221 / CIP 109841 / QLW-P1DMWA-1) GN=hscA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 572 bits (1475), Expect = e-161, Method: Composition-based stats.
Identities = 290/514 (56%), Positives = 380/514 (73%), Gaps = 3/514 (0%)
Query: 620 MALLQISEP-DDISVKNKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYL 678
MALLQISEP ++ + +++GID GTTNSLVAIV++ +P+VL D+ G L+PS+VRYL
Sbjct: 1 MALLQISEPGKSLAPHQRRIAVGIDLGTTNSLVAIVQDALPKVLPDEQGRELLPSVVRYL 60
Query: 679 PDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNI-NTNSFPYDFQNKFGMLHIKTIS 737
P+G+ G +A + IDPKNTI S+KRF+ R + ++ N S PYDF ++ GML ++T++
Sbjct: 61 PNGRTQAGFEALESVVIDPKNTILSVKRFMGRGISDVENIESAPYDFVDQPGMLKLRTVA 120
Query: 738 GIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLR 797
G KSPIE+SA+I L+++AE++VN+ I GAVITVPAYF+D QRQ TK+AAKLAG+ VLR
Sbjct: 121 GDKSPIEVSAEILARLRQLAEDSVNDDIVGAVITVPAYFDDAQRQATKDAAKLAGIEVLR 180
Query: 798 LLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDD 857
LLNEPT+AAIAY LD N EG++AVYDLGGGTFDISIL+ GVF+VLS GGDS LGGDD
Sbjct: 181 LLNEPTAAAIAYGLD-NATEGVYAVYDLGGGTFDISILRMSKGVFEVLSTGGDSALGGDD 239
Query: 858 FDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITID 917
FD+ L+ W+++ A L LS D L+ + KELLS+ +++ L+D +VN+ I
Sbjct: 240 FDHRLYCWVIEQAKLPPLSIHDHRTLLQACKHAKELLSHNPLARVHETLADGTVVNVGIS 299
Query: 918 MKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTL 977
Q F ITQ+LV++T++ KAL DA L +DI V++VGGSTRM ++ V F T
Sbjct: 300 QAQLFEITQNLVSKTLVACKKALRDAGLKAEDIKGVVMVGGSTRMPNVQRAVGELFGTKP 359
Query: 978 LTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTI 1037
L +++PD+ V GAA+QA+ L+GN+ DD +LLLDVIPLSLGIET+GGLVEKII RNT I
Sbjct: 360 LNNLNPDQVVALGAAMQADLLAGNQSKDDEWLLLDVIPLSLGIETMGGLVEKIIPRNTPI 419
Query: 1038 PCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQV 1097
P + + +FTTFKD QTA+AI+VVQGE EL ++C+ L FELR IPPM AG ARI+VT+QV
Sbjct: 420 PVARAQDFTTFKDGQTALAIQVVQGERELAQDCRSLGRFELRGIPPMAAGAARIRVTFQV 479
Query: 1098 DADGLLSIFAYEKISGKKKFITIKPFYNMNLDEI 1131
DADGLLS+ A E SG K I IKP Y + EI
Sbjct: 480 DADGLLSVSATEIGSGVKASIDIKPSYGLTDGEI 513
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Chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Has a low intrinsic ATPase activity which is markedly stimulated by HscB. Polynucleobacter necessarius subsp. asymbioticus (strain DSM 18221 / CIP 109841 / QLW-P1DMWA-1) (taxid: 312153) |
| >sp|Q0KCG7|HSCA_CUPNH Chaperone protein HscA homolog OS=Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=hscA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 570 bits (1468), Expect = e-161, Method: Composition-based stats.
Identities = 289/514 (56%), Positives = 379/514 (73%), Gaps = 3/514 (0%)
Query: 620 MALLQISEPD-DISVKNKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYL 678
MALLQISEP + + +++GID GTTNSLVA VR++IPEVL D+ G L+PS+VRYL
Sbjct: 1 MALLQISEPGMSPAPHQRRLAVGIDLGTTNSLVAAVRSSIPEVLGDERGRALLPSVVRYL 60
Query: 679 PDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNI-NTNSFPYDFQNKFGMLHIKTIS 737
PD ++G +A+ DPKNTI S+KRF+ R L+++ N PYDF + GML IKT +
Sbjct: 61 PDRTAHIGYRAQEEAVRDPKNTIVSVKRFMGRGLRDVANIEHSPYDFVDAPGMLQIKTAA 120
Query: 738 GIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLR 797
G+KSP+EISA+I TL++ AE+ + + + GAVITVPAYF++ QRQ TK+AA+LAGL VLR
Sbjct: 121 GVKSPVEISAEILATLRQRAEDTLGDDLVGAVITVPAYFDEAQRQATKDAARLAGLEVLR 180
Query: 798 LLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDD 857
LLNEPT+AAIAY LD N EGI+AVYDLGGGTFDIS+LK GVF+VL+ GGDS LGGDD
Sbjct: 181 LLNEPTAAAIAYGLD-NASEGIYAVYDLGGGTFDISVLKLTQGVFEVLATGGDSALGGDD 239
Query: 858 FDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITID 917
FD L WIV+ A L+ LS +D+ +LM+++R KE LS S ++ L +IV++T+
Sbjct: 240 FDQRLLCWIVEQASLQPLSAQDMRLLMVRARAAKEALSESDSTVIDAVLESGEIVHLTLT 299
Query: 918 MKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTL 977
++ F +T HLV +T+ KAL DA + ++ V+LVGG+TRM I + V ++F T
Sbjct: 300 VEIFDQVTAHLVQKTLAPVRKALRDAGVAPDEVKGVVLVGGATRMPSIRKAVGDYFGQTP 359
Query: 978 LTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTI 1037
LT++DPD+ V GAA+QAN L+GN +++LLLDVIPLSLG+ET+GGLVEKII RN+TI
Sbjct: 360 LTNLDPDRVVALGAAMQANLLAGNHAPGEDWLLLDVIPLSLGVETMGGLVEKIIPRNSTI 419
Query: 1038 PCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQV 1097
P + + EFTTFKD QTA+AI V+QGE EL +C+ LA FELR IPPM AG ARI+VTYQV
Sbjct: 420 PVARAQEFTTFKDGQTAMAIHVLQGERELASDCRSLARFELRGIPPMVAGAARIRVTYQV 479
Query: 1098 DADGLLSIFAYEKISGKKKFITIKPFYNMNLDEI 1131
DADGLLS+ A E SG + +T+KP Y + D+I
Sbjct: 480 DADGLLSVTARETHSGVEASVTVKPSYGLADDDI 513
|
Chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Has a low intrinsic ATPase activity which is markedly stimulated by HscB. Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) (taxid: 381666) |
| >sp|Q1H361|ISCS_METFK Cysteine desulfurase OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=iscS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 569 bits (1466), Expect = e-160, Method: Compositional matrix adjust.
Identities = 268/370 (72%), Positives = 314/370 (84%), Gaps = 2/370 (0%)
Query: 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
+DYSATTPIDPRV +KMIPYL FGNPASR+H +GWTAEKA+E AR EVA+L+ ADPRE
Sbjct: 9 LDYSATTPIDPRVAEKMIPYLTEHFGNPASRSHAFGWTAEKAVENAREEVARLVNADPRE 68
Query: 61 IIWTSGATESNNLAIKGAAHFYK-KRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK 119
I+WTSGATESNNLAIKGAA+FY +GKHI+TVQTEHK+V+D++R+LE G+ TYL P+
Sbjct: 69 IVWTSGATESNNLAIKGAANFYSPSKGKHIVTVQTEHKAVIDTVRELERLGYEATYLIPE 128
Query: 120 NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGK 179
NGLI L + + + DT+L SVMLVNNEIGVIQ I IG +CR +GVIFH DAAQA GK
Sbjct: 129 PNGLIDLDKFKAALRPDTVLASVMLVNNEIGVIQDIEAIGNICREQGVIFHVDAAQATGK 188
Query: 180 IDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATH 239
+ I++Q VDLMSFSAHK YGPKGIGALY+RR PR RIEAQ+HGGGHE G+RSGTLATH
Sbjct: 189 VHIDLQKLPVDLMSFSAHKTYGPKGIGALYVRRKPRVRIEAQMHGGGHERGMRSGTLATH 248
Query: 240 QIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN 299
QIVGMGEAFR+AR EM E RI L+ RL GL E IEE+Y+NGD+ +R+ HNLNISFN
Sbjct: 249 QIVGMGEAFRIAREEMDSENVRIRQLRDRLLKGLQE-IEEVYVNGDLEHRVAHNLNISFN 307
Query: 300 FIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEI 359
F+EGESL+MA+KDIAVSSGSACTSASLEPSYVLRALG +DELAHSSIRF+IGRFTTE+EI
Sbjct: 308 FVEGESLIMAVKDIAVSSGSACTSASLEPSYVLRALGRSDELAHSSIRFSIGRFTTEEEI 367
Query: 360 DFTIKLLKMK 369
D+TI+L+K K
Sbjct: 368 DYTIQLMKSK 377
|
Catalyzes the removal of elemental sulfur from cysteine to produce alanine. Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) (taxid: 265072) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 7 |
| >sp|B2U8U5|HSCA_RALPJ Chaperone protein HscA homolog OS=Ralstonia pickettii (strain 12J) GN=hscA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 568 bits (1465), Expect = e-160, Method: Composition-based stats.
Identities = 286/514 (55%), Positives = 379/514 (73%), Gaps = 3/514 (0%)
Query: 620 MALLQISEP-DDISVKNKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYL 678
MALLQISEP + + + +++GID GTTNSLVA VR+++PEVL D G L+PS+VRYL
Sbjct: 1 MALLQISEPGESPAPHQRRLAVGIDLGTTNSLVASVRSSVPEVLPDDQGRPLLPSVVRYL 60
Query: 679 PDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNI-NTNSFPYDFQNKFGMLHIKTIS 737
P G ++G KA+ DPKNTI S+KRF+ R LK++ + + PYDF + GM+ +KT++
Sbjct: 61 PTGGAHIGYKAQAEAVRDPKNTIISVKRFMGRGLKDVAHIENTPYDFVDAPGMVQLKTVA 120
Query: 738 GIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLR 797
G+KSP+E+SA+I TL++ AE+ + + + GAVITVPAYF+D QRQ TK+AAKLAGLNVLR
Sbjct: 121 GVKSPVEVSAEILATLRQRAEDTLGDELVGAVITVPAYFDDAQRQATKDAAKLAGLNVLR 180
Query: 798 LLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDD 857
LLNEPT+AAIAY LD N EGI+AVYDLGGGTFDIS+LK GVF+V+S GGDS LGGDD
Sbjct: 181 LLNEPTAAAIAYGLD-NGSEGIYAVYDLGGGTFDISVLKLTKGVFEVMSTGGDSALGGDD 239
Query: 858 FDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITID 917
FD + W+V+ A L+ LS +D +L+ K+R KE LS S +++ LS + V++ +
Sbjct: 240 FDQRIVCWVVEQAGLQPLSAEDTRLLLNKARAAKEWLSTADSTEIDAMLSTGETVHLVLT 299
Query: 918 MKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTL 977
+ F +T LV +T+ +AL DA +T++D+ V+LVGG+TRM I V F T
Sbjct: 300 AETFAELTATLVQKTLSPVRRALRDAGVTVEDVKGVVLVGGATRMPIIRRAVGQLFGQTP 359
Query: 978 LTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTI 1037
LT++DPD+ V GAA+QAN L+GNR +++LLLDVIPLSLG+ET+GGLVEKII RN+TI
Sbjct: 360 LTNLDPDQVVAIGAAMQANLLAGNRAPGEDWLLLDVIPLSLGVETMGGLVEKIIPRNSTI 419
Query: 1038 PCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQV 1097
P + + EFTTFKD QTA+AI V+QGE EL +C+ LA FELR IPPM AG ARI+VTYQV
Sbjct: 420 PVARAQEFTTFKDGQTAMAIHVLQGERELASDCRSLARFELRGIPPMVAGAARIRVTYQV 479
Query: 1098 DADGLLSIFAYEKISGKKKFITIKPFYNMNLDEI 1131
DADGLLS+ A E +SG + I +KP Y + D++
Sbjct: 480 DADGLLSVSARETVSGVEASIAVKPSYGLGDDDV 513
|
Chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Has a low intrinsic ATPase activity which is markedly stimulated by HscB. Ralstonia pickettii (strain 12J) (taxid: 402626) |
| >sp|Q1LPL1|HSCA_RALME Chaperone protein HscA homolog OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=hscA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 567 bits (1462), Expect = e-160, Method: Composition-based stats.
Identities = 286/514 (55%), Positives = 379/514 (73%), Gaps = 3/514 (0%)
Query: 620 MALLQISEPD-DISVKNKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYL 678
MALLQISEP + + +++GID GTTNSLVA VRN+IPEVL D++G L+PS+VRYL
Sbjct: 1 MALLQISEPGMSPAPHQRRLAVGIDLGTTNSLVAAVRNSIPEVLPDEHGRALLPSVVRYL 60
Query: 679 PDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNI-NTNSFPYDFQNKFGMLHIKTIS 737
P+G ++G KA+ DPKNTI S+KRF+ R ++++ N YDF + GM+ +KT +
Sbjct: 61 PNGNAHIGYKAQDEAVRDPKNTIISVKRFMGRGVRDVANIEHSLYDFVDAPGMVQLKTAA 120
Query: 738 GIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLR 797
GIKSP+E+SA+I TL++ AE+++ + + GAVITVPAYF+D QRQ TK+AA+LAGL VLR
Sbjct: 121 GIKSPVEVSAEILATLRQRAEDSLGDELVGAVITVPAYFDDAQRQATKDAAQLAGLEVLR 180
Query: 798 LLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDD 857
LLNEPT+AAIAY LD N EGI+AVYDLGGGTFDIS+LK GVF+V+S GGDS LGGDD
Sbjct: 181 LLNEPTAAAIAYGLD-NAAEGIYAVYDLGGGTFDISVLKLTKGVFEVMSTGGDSALGGDD 239
Query: 858 FDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITID 917
FD L WIV+ L+ LS +D +LM+++R KE LS S ++ L+ +IV++T+D
Sbjct: 240 FDQRLLCWIVEQVGLQPLSAEDSRLLMVRARAAKEALSSSDSTVIDAVLTSGEIVHLTLD 299
Query: 918 MKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTL 977
F IT +LV +T+ KAL DA + +D+ V+LVGG+TRM I + V ++F
Sbjct: 300 ADTFIQITANLVQKTLTPVRKALRDAGVGPEDVKGVVLVGGATRMPAIRKAVGDYFGQQP 359
Query: 978 LTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTI 1037
LT++DPD+ V GAA+QAN L+GN +++LLLDVIPLSLG+ET+GGLVEKI+ RN+TI
Sbjct: 360 LTNLDPDRVVALGAAMQANLLAGNHAPGEDWLLLDVIPLSLGVETMGGLVEKIVPRNSTI 419
Query: 1038 PCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQV 1097
P + + EFTTFKD QTA+AI V+QGE EL +C+ LA FELR IPPM AG ARI+VTYQV
Sbjct: 420 PVARAQEFTTFKDGQTAMAIHVLQGERELASDCRSLARFELRGIPPMVAGAARIRVTYQV 479
Query: 1098 DADGLLSIFAYEKISGKKKFITIKPFYNMNLDEI 1131
DADGLLS+ A E SG + +++KP Y + D+I
Sbjct: 480 DADGLLSVSARETGSGVEASVSVKPSYGLADDDI 513
|
Chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Has a low intrinsic ATPase activity which is markedly stimulated by HscB. Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) (taxid: 266264) |
| >sp|B3R475|HSCA_CUPTR Chaperone protein HscA homolog OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=hscA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 566 bits (1459), Expect = e-160, Method: Composition-based stats.
Identities = 289/514 (56%), Positives = 378/514 (73%), Gaps = 3/514 (0%)
Query: 620 MALLQISEPD-DISVKNKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYL 678
MALLQISEP + + +++GID GTTNSLVA VR++IPEVL D+ G L+PS+VRYL
Sbjct: 1 MALLQISEPGMSPAPHQRRLAVGIDLGTTNSLVAAVRSSIPEVLADERGRALLPSVVRYL 60
Query: 679 PDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNI-NTNSFPYDFQNKFGMLHIKTIS 737
PD +G +A+ DPKNTI S+KRF+ R L+++ N PYDF + GM+ IKT +
Sbjct: 61 PDRTAQIGYRAQDEAVRDPKNTIVSVKRFMGRGLRDVANIEHSPYDFVDAPGMVQIKTAA 120
Query: 738 GIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLR 797
G+KSP+EISA+I TL++ AE+++ + + GAVITVPAYF++ QRQ TK+AA+LAGL VLR
Sbjct: 121 GVKSPVEISAEILATLRQRAEDSLGDDLVGAVITVPAYFDEAQRQATKDAARLAGLEVLR 180
Query: 798 LLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDD 857
LLNEPT+AAIAY LD N EGI+AVYDLGGGTFDIS+LK GVF+VL+ GGDS LGGDD
Sbjct: 181 LLNEPTAAAIAYGLD-NAAEGIYAVYDLGGGTFDISVLKLTQGVFEVLATGGDSALGGDD 239
Query: 858 FDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITID 917
FD L WIV+ A L+ LS +D+ +LM+++R KE LS S ++ L +IV++T+
Sbjct: 240 FDQRLLCWIVEQANLQPLSAQDMRLLMVRARAAKEALSEADSTVIDAVLESGEIVHLTLT 299
Query: 918 MKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTL 977
+ F IT HLV +T+ KAL DA + +++ V+LVGG+TRM I + V +FF
Sbjct: 300 DEIFEQITAHLVQKTLAPVRKALRDAGVGPEEVKGVVLVGGATRMPSIRKAVGDFFGQNP 359
Query: 978 LTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTI 1037
LT++DPD+ V GAA+QAN L+GN +++LLLDVIPLSLG+ET+GGLVEKII RN+TI
Sbjct: 360 LTNLDPDRVVALGAAMQANLLAGNHAPGEDWLLLDVIPLSLGVETMGGLVEKIIPRNSTI 419
Query: 1038 PCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQV 1097
P + + EFTTFKD QTA+AI V+QGE EL +C+ LA FELR IPPM AG ARI+VTYQV
Sbjct: 420 PVARAQEFTTFKDGQTAMAIHVLQGERELASDCRSLARFELRGIPPMVAGAARIRVTYQV 479
Query: 1098 DADGLLSIFAYEKISGKKKFITIKPFYNMNLDEI 1131
DADGLLS+ A E SG + +T+KP Y + D+I
Sbjct: 480 DADGLLSVTARETHSGVEASVTVKPSYGLADDDI 513
|
Chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Has a low intrinsic ATPase activity which is markedly stimulated by HscB. Cupriavidus taiwanensis (strain R1 / LMG 19424) (taxid: 164546) |
| >sp|Q8Y0L9|HSCA_RALSO Chaperone protein HscA homolog OS=Ralstonia solanacearum (strain GMI1000) GN=hscA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 564 bits (1454), Expect = e-159, Method: Composition-based stats.
Identities = 284/514 (55%), Positives = 380/514 (73%), Gaps = 3/514 (0%)
Query: 620 MALLQISEP-DDISVKNKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYL 678
MALLQISEP + + + +++GID GTTNSLVA VR+++PEVL D+ G L+PS+VRYL
Sbjct: 1 MALLQISEPGESPAPHQRRLAVGIDLGTTNSLVAAVRSSVPEVLPDEQGRPLLPSVVRYL 60
Query: 679 PDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNI-NTNSFPYDFQNKFGMLHIKTIS 737
P G +G KA++ DPKNTI S+KRF+ R LK++ + + PYDF + GM+ +KT++
Sbjct: 61 PAGGAQIGYKAQVEAVRDPKNTIVSVKRFMGRGLKDVAHIENTPYDFVDAPGMVQLKTVA 120
Query: 738 GIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLR 797
G+KSP+E+SA+I TL++ AE+ + + + GAVITVPAYF+D QRQ TK+AA+LAGLNVLR
Sbjct: 121 GVKSPVEVSAEILATLRQRAEDTLGDDLVGAVITVPAYFDDAQRQATKDAARLAGLNVLR 180
Query: 798 LLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDD 857
LLNEPT+AAIAY LD N EG++AVYDLGGGTFDIS+LK GVF+V+S GGDS LGGDD
Sbjct: 181 LLNEPTAAAIAYGLD-NAAEGVYAVYDLGGGTFDISVLKLTKGVFEVMSTGGDSALGGDD 239
Query: 858 FDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITID 917
FD + WIV+ A L+ LS +D+ +L+ K+R KE LS S +++ LS + V++ +
Sbjct: 240 FDQRIACWIVEQAGLQPLSAEDMRLLLNKARAAKEWLSGADSTEVDAVLSTGETVHLVLT 299
Query: 918 MKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTL 977
+ F +T +LV +T+ +AL DA + + +I V+LVGG+TRM I V+ F
Sbjct: 300 AETFAELTANLVQKTLAPVRRALRDAGVAVDEIQGVVLVGGATRMPVIRRAVAQLFGRAP 359
Query: 978 LTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTI 1037
LT++DPD+ V GAA+QA+ L+GNR D++LLLDVIPLSLG+ET+GGLVEKII RN+TI
Sbjct: 360 LTNLDPDQVVAIGAAMQASLLAGNRAAGDDWLLLDVIPLSLGVETMGGLVEKIIPRNSTI 419
Query: 1038 PCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQV 1097
P + + EFTTFKD QTA+AI V+QGE EL +C+ LA FELR IPPM AG ARI+VTYQV
Sbjct: 420 PVARAQEFTTFKDGQTAMAIHVLQGERELAGDCRSLARFELRGIPPMVAGAARIRVTYQV 479
Query: 1098 DADGLLSIFAYEKISGKKKFITIKPFYNMNLDEI 1131
DADGLLS+ A E +SG + I +KP Y + D+I
Sbjct: 480 DADGLLSVSARETVSGVEASIAVKPSYGLGDDDI 513
|
Chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Has a low intrinsic ATPase activity which is markedly stimulated by HscB. Ralstonia solanacearum (strain GMI1000) (taxid: 267608) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2602 | ||||||
| 409406867 | 621 | molecular chaperone protein [Herbaspiril | 0.196 | 0.822 | 0.616 | 1e-179 | |
| 300312439 | 621 | molecular chaperone protein [Herbaspiril | 0.196 | 0.822 | 0.608 | 1e-177 | |
| 134095420 | 417 | tRNA 4-thiouridine sulfurtransferase [He | 0.147 | 0.920 | 0.748 | 1e-174 | |
| 152980888 | 417 | cysteine desulfurase [Janthinobacterium | 0.141 | 0.882 | 0.775 | 1e-173 | |
| 300312444 | 417 | cysteine desulfurase [Herbaspirillum ser | 0.141 | 0.882 | 0.777 | 1e-173 | |
| 329904115 | 621 | Chaperone protein HscA [Oxalobacteraceae | 0.196 | 0.822 | 0.593 | 1e-173 | |
| 409406872 | 417 | cysteine desulfurase [Herbaspirillum sp. | 0.141 | 0.882 | 0.775 | 1e-172 | |
| 399019488 | 417 | cysteine desulfurase IscS [Herbaspirillu | 0.141 | 0.882 | 0.769 | 1e-172 | |
| 398834079 | 417 | cysteine desulfurase IscS [Herbaspirillu | 0.141 | 0.882 | 0.761 | 1e-172 | |
| 415916354 | 417 | Cysteine desulfurase [Herbaspirillum fri | 0.141 | 0.882 | 0.769 | 1e-171 |
| >gi|409406867|ref|ZP_11255329.1| molecular chaperone protein [Herbaspirillum sp. GW103] gi|386435416|gb|EIJ48241.1| molecular chaperone protein [Herbaspirillum sp. GW103] | Back alignment and taxonomy information |
|---|
Score = 637 bits (1643), Expect = e-179, Method: Composition-based stats.
Identities = 317/514 (61%), Positives = 397/514 (77%), Gaps = 3/514 (0%)
Query: 620 MALLQISEPD-DISVKNKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYL 678
MALLQISEP + + +++GID GTTNSLVA VRN+IPEVL D G L+PSIVRYL
Sbjct: 1 MALLQISEPGMSTAPHQRRLAVGIDLGTTNSLVATVRNSIPEVLADDDGRVLLPSIVRYL 60
Query: 679 PDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNI-NTNSFPYDFQNKFGMLHIKTIS 737
P+G ++G KA+ Q IDP+NTI S+KRF+ R LK+I + + PYDFQ++ GM+ IKT++
Sbjct: 61 PNGHAHIGYKAQAAQTIDPRNTIVSVKRFMGRGLKDIAHAENMPYDFQDQPGMVQIKTVA 120
Query: 738 GIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLR 797
G+KSP+E+SAQI TL++ AE+A+ + + GAVITVPAYF+D QRQ TK+AA+LAGLNVLR
Sbjct: 121 GVKSPVEVSAQILATLRQTAEDALGDDLVGAVITVPAYFDDAQRQATKDAAQLAGLNVLR 180
Query: 798 LLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDD 857
LLNEPT+AAIAY LD N EGIFAVYDLGGGTFDISILK GVF+VLS GGDS LGGDD
Sbjct: 181 LLNEPTAAAIAYGLD-NASEGIFAVYDLGGGTFDISILKLTRGVFEVLSTGGDSALGGDD 239
Query: 858 FDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITID 917
FD+ LF WI A L+ LS +D +LM+K+RE+KELLS + V+++ L + V+++I
Sbjct: 240 FDHRLFCWISHEAQLQPLSDEDTRLLMVKAREVKELLSSKEEVQIDAVLKSGEEVHLSIT 299
Query: 918 MKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTL 977
QF ITQHLV +T+ KAL DA+LT++D++ V+LVGG+TRM HI V FFKT
Sbjct: 300 AAQFNEITQHLVAKTMAPVRKALRDASLTVEDVDGVVLVGGATRMPHIRRAVGEFFKTNP 359
Query: 978 LTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTI 1037
L++IDPDK V GAA+QAN L+GNR D++LLLDVIPLSLGIET+GGL EK+I RN+TI
Sbjct: 360 LSNIDPDKVVALGAAVQANLLAGNRAPGDDWLLLDVIPLSLGIETMGGLAEKVIPRNSTI 419
Query: 1038 PCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQV 1097
PC+ + EFTTFKD QTA+AI VVQGE ELV +C+ LA FELR IPPM AG ARI+VTYQV
Sbjct: 420 PCARAQEFTTFKDGQTAMAIHVVQGERELVADCRSLARFELRGIPPMAAGAARIRVTYQV 479
Query: 1098 DADGLLSIFAYEKISGKKKFITIKPFYNMNLDEI 1131
DADGLL++ A E SG + IT+KP Y + DEI
Sbjct: 480 DADGLLAVSAREMTSGVEASITVKPSYGLGDDEI 513
|
Source: Herbaspirillum sp. GW103 Species: Herbaspirillum sp. GW103 Genus: Herbaspirillum Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|300312439|ref|YP_003776531.1| molecular chaperone protein [Herbaspirillum seropedicae SmR1] gi|300075224|gb|ADJ64623.1| molecular chaperone protein [Herbaspirillum seropedicae SmR1] | Back alignment and taxonomy information |
|---|
Score = 630 bits (1625), Expect = e-177, Method: Composition-based stats.
Identities = 313/514 (60%), Positives = 394/514 (76%), Gaps = 3/514 (0%)
Query: 620 MALLQISEPD-DISVKNKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYL 678
MALLQISEP + + +++GID GTTNSLVA VRN+IPEVL D G L+PS+VRYL
Sbjct: 1 MALLQISEPGMSTAPHQRRLAVGIDLGTTNSLVATVRNSIPEVLADDDGRVLLPSVVRYL 60
Query: 679 PDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNI-NTNSFPYDFQNKFGMLHIKTIS 737
P+G +G KA+ Q DP+NTI S+KRF+ R LK+I + + PYDFQ++ GM+ IKT++
Sbjct: 61 PNGHANIGYKAQAAQTTDPRNTIVSVKRFMGRGLKDIAHAENMPYDFQDQPGMVQIKTVA 120
Query: 738 GIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLR 797
G+KSP+E+SAQI TL++ AE+A+ + + GAVITVPAYF+D QRQ TK+AA+LAGLNVLR
Sbjct: 121 GVKSPVEVSAQILATLRQTAEDALGDDLVGAVITVPAYFDDAQRQATKDAAQLAGLNVLR 180
Query: 798 LLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDD 857
LLNEPT+AAIAY LD N EG+FAVYDLGGGTFDISILK GVF+VL+ GGDS LGGDD
Sbjct: 181 LLNEPTAAAIAYGLD-NSSEGVFAVYDLGGGTFDISILKLTRGVFEVLATGGDSALGGDD 239
Query: 858 FDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITID 917
FD+ LF WI A L+ LS +D +LM+K+RE+KELLS + V+++ L + V+++I
Sbjct: 240 FDHRLFCWISHEAQLQPLSDEDTRLLMVKAREVKELLSTKDEVQIDAVLRSGEEVHLSIT 299
Query: 918 MKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTL 977
QF ITQHLV +T+ KAL DA LT++D++ V+LVGG+TRM HI V FFKT
Sbjct: 300 AAQFNEITQHLVAKTMAPVRKALRDAGLTVEDVDGVVLVGGATRMPHIRRAVGEFFKTNP 359
Query: 978 LTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTI 1037
L++IDPDK V GAA+QAN L+GNR D++LLLDVIPLSLGIET+GGL EK+I RN+TI
Sbjct: 360 LSNIDPDKVVALGAAVQANLLAGNRAPGDDWLLLDVIPLSLGIETMGGLAEKVIPRNSTI 419
Query: 1038 PCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQV 1097
PC+ + EFTTFKD QTA+AI VVQGE ELV +C+ LA FELR IPPM AG ARI+VTYQV
Sbjct: 420 PCARAQEFTTFKDGQTAMAIHVVQGERELVADCRSLARFELRGIPPMAAGAARIRVTYQV 479
Query: 1098 DADGLLSIFAYEKISGKKKFITIKPFYNMNLDEI 1131
DADGLL++ A E SG + IT+KP Y + DEI
Sbjct: 480 DADGLLAVSAREMTSGVEASITVKPSYGLGDDEI 513
|
Source: Herbaspirillum seropedicae SmR1 Species: Herbaspirillum seropedicae Genus: Herbaspirillum Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|134095420|ref|YP_001100495.1| tRNA 4-thiouridine sulfurtransferase [Herminiimonas arsenicoxydans] gi|133739323|emb|CAL62373.1| Cysteine desulfurase [Herminiimonas arsenicoxydans] | Back alignment and taxonomy information |
|---|
Score = 621 bits (1601), Expect = e-174, Method: Compositional matrix adjust.
Identities = 288/385 (74%), Positives = 337/385 (87%), Gaps = 1/385 (0%)
Query: 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
MDYSATTPIDPRV DKMIPYLR QFGNPASR+H+YGWTAEKA+E AR +VA+L+ ADPRE
Sbjct: 22 MDYSATTPIDPRVADKMIPYLREQFGNPASRSHMYGWTAEKAVEDAREQVAKLVNADPRE 81
Query: 61 IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN 120
IIWTSGATE NNLA+KGAA FYK +GKHIITV+TEHK+VLD++R+LE GF TYL+P++
Sbjct: 82 IIWTSGATEGNNLALKGAAQFYKTKGKHIITVKTEHKAVLDTVRELERQGFEATYLQPQD 141
Query: 121 NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKI 180
NGLIT+ QL E I DTILVSVMLVNNEIGVIQPI EIGELCRSKG+IFHCDAAQA GK+
Sbjct: 142 NGLITIEQLAEAIRPDTILVSVMLVNNEIGVIQPIDEIGELCRSKGIIFHCDAAQATGKV 201
Query: 181 DINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQ 240
I+++ KVDLM+F+AHK YGPKGIGALY+RR PR RIEAQ+HGGGHE GLRSGTLATHQ
Sbjct: 202 KIDLEKSKVDLMTFTAHKTYGPKGIGALYVRRKPRIRIEAQMHGGGHERGLRSGTLATHQ 261
Query: 241 IVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF 300
IVGMGEAFR+AR EM EE+ RI L+ RL GLM+ +EE+YINGDM++R+PHNLN+SFN+
Sbjct: 262 IVGMGEAFRIAREEMDEEIVRITALRDRLAKGLMD-MEEVYINGDMDHRVPHNLNVSFNY 320
Query: 301 IEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEID 360
+EGESL+MAIKD+AVSSGSACTSASLEPSYVLRALG +DELAHSSIRFT GRFTTE+++D
Sbjct: 321 VEGESLIMAIKDLAVSSGSACTSASLEPSYVLRALGRSDELAHSSIRFTFGRFTTEEDVD 380
Query: 361 FTIKLLKMKEFFMSYSEKVLDHYEN 385
FTIKL+K K + + D Y++
Sbjct: 381 FTIKLIKEKVAKLRELSPLWDMYKD 405
|
Source: Herminiimonas arsenicoxydans Species: Herminiimonas arsenicoxydans Genus: Herminiimonas Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|152980888|ref|YP_001352942.1| cysteine desulfurase [Janthinobacterium sp. Marseille] gi|151280965|gb|ABR89375.1| cysteine desulfurase [Janthinobacterium sp. Marseille] | Back alignment and taxonomy information |
|---|
Score = 619 bits (1595), Expect = e-173, Method: Compositional matrix adjust.
Identities = 286/369 (77%), Positives = 330/369 (89%), Gaps = 1/369 (0%)
Query: 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
MDYSATTPIDPRV DKMIPYLR QFGNPASR+H+YGWTAEKA+E AR +VA L+ ADPRE
Sbjct: 22 MDYSATTPIDPRVADKMIPYLREQFGNPASRSHMYGWTAEKAVEDAREQVAALVNADPRE 81
Query: 61 IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN 120
IIWTSGATE NNLA+KGAA FYK +GKHIITV+TEHK+VLD++R+LE GF TYL+P++
Sbjct: 82 IIWTSGATEGNNLALKGAAQFYKTKGKHIITVKTEHKAVLDTVRELERQGFEATYLQPQD 141
Query: 121 NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKI 180
NGLIT+ QL E I DTILVSVMLVNNEIGVIQPI EIGELCRSKG+IFHCDAAQA GK+
Sbjct: 142 NGLITIEQLAEAIRPDTILVSVMLVNNEIGVIQPIDEIGELCRSKGIIFHCDAAQATGKV 201
Query: 181 DINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQ 240
I+++ KVDLM+F+AHK YGPKGIGALY+RR PR RIEAQ+HGGGHE GLRSGTLATHQ
Sbjct: 202 KIDLEKSKVDLMTFTAHKTYGPKGIGALYVRRKPRVRIEAQMHGGGHERGLRSGTLATHQ 261
Query: 241 IVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF 300
IVGMGEAFR+AR EM EE+ RI L+ RL GLM+ +EE+YINGDM++R+PHNLN+SFN+
Sbjct: 262 IVGMGEAFRIAREEMDEEIVRIKGLRDRLAKGLMD-MEEVYINGDMDHRVPHNLNVSFNY 320
Query: 301 IEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEID 360
+EGESL+MAIKD+AVSSGSACTSASLEPSYVLRALG +DELAHSSIRFT GRFTTE+++D
Sbjct: 321 VEGESLIMAIKDLAVSSGSACTSASLEPSYVLRALGRSDELAHSSIRFTFGRFTTEEDVD 380
Query: 361 FTIKLLKMK 369
FTIKL+K K
Sbjct: 381 FTIKLIKEK 389
|
Source: Janthinobacterium sp. Marseille Species: Janthinobacterium sp. Marseille Genus: Janthinobacterium Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|300312444|ref|YP_003776536.1| cysteine desulfurase [Herbaspirillum seropedicae SmR1] gi|300075229|gb|ADJ64628.1| cysteine desulfurase protein [Herbaspirillum seropedicae SmR1] | Back alignment and taxonomy information |
|---|
Score = 616 bits (1589), Expect = e-173, Method: Compositional matrix adjust.
Identities = 287/369 (77%), Positives = 326/369 (88%), Gaps = 1/369 (0%)
Query: 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
MDYSATTP+DPRV DKMIPYLR QFGNPASR+H+YGWTAEKA+E+AR EVA+L+ AD RE
Sbjct: 22 MDYSATTPVDPRVADKMIPYLREQFGNPASRSHMYGWTAEKAVEEAREEVAKLVNADSRE 81
Query: 61 IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN 120
IIWTSGATESNNLAIKGAA FYK +GKHIITV+TEHK+VLD+ R+LE GF TYL+P++
Sbjct: 82 IIWTSGATESNNLAIKGAAQFYKSKGKHIITVKTEHKAVLDTFRELERIGFEATYLQPQD 141
Query: 121 NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKI 180
NGL+T+ Q+ + DTILVSVMLVNNEIGVIQP+ EIGE CRSKG+IFH DAAQA GK+
Sbjct: 142 NGLVTVEQIAAAVRPDTILVSVMLVNNEIGVIQPVPEIGEFCRSKGIIFHSDAAQATGKV 201
Query: 181 DINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQ 240
I+++N+KVDLMSFSAHK YGPKGIGALY+RR PR RIEAQ+HGGGHE GLRSGTLATHQ
Sbjct: 202 KIDLENWKVDLMSFSAHKSYGPKGIGALYVRRKPRVRIEAQMHGGGHERGLRSGTLATHQ 261
Query: 241 IVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF 300
IVGMGEAFRLAR EM EL RI L+ RL GL E IEE YINGDM +R+PHNLN+SFN+
Sbjct: 262 IVGMGEAFRLAREEMDSELARIRALRDRLAKGLQE-IEETYINGDMEHRVPHNLNVSFNY 320
Query: 301 IEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEID 360
+EGESL+MAIKDIAVSSGSACTSASLEPSYVLRALG +DELAHSSIRFTIGRFTTE++ID
Sbjct: 321 VEGESLIMAIKDIAVSSGSACTSASLEPSYVLRALGRSDELAHSSIRFTIGRFTTEEDID 380
Query: 361 FTIKLLKMK 369
FTI L+K K
Sbjct: 381 FTIALIKSK 389
|
Source: Herbaspirillum seropedicae SmR1 Species: Herbaspirillum seropedicae Genus: Herbaspirillum Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|329904115|ref|ZP_08273681.1| Chaperone protein HscA [Oxalobacteraceae bacterium IMCC9480] gi|327548137|gb|EGF32853.1| Chaperone protein HscA [Oxalobacteraceae bacterium IMCC9480] | Back alignment and taxonomy information |
|---|
Score = 615 bits (1586), Expect = e-173, Method: Composition-based stats.
Identities = 305/514 (59%), Positives = 394/514 (76%), Gaps = 3/514 (0%)
Query: 620 MALLQISEPDDISVKNKC-VSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYL 678
MALLQISEP + ++ +++GID GTTNSLVA VRN+IPEVL D+ G L+PSIVRYL
Sbjct: 1 MALLQISEPGMSTAPHQHRLAVGIDLGTTNSLVATVRNSIPEVLTDEDGRALLPSIVRYL 60
Query: 679 PDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNI-NTNSFPYDFQNKFGMLHIKTIS 737
PDG +G A+ Q DP+NT+SS+KR + R LK+I + + PYDF + GM+ +KT++
Sbjct: 61 PDGHANIGYAAQAMQVADPRNTVSSVKRLMGRGLKDIAHAENLPYDFVDSPGMVQLKTVA 120
Query: 738 GIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLR 797
G+KSP+E+SAQI TL++ AE+A+ + + GAVITVPAYF+D QRQ TK+AA LAGLNVLR
Sbjct: 121 GVKSPVEVSAQILATLRQRAEDALGDELVGAVITVPAYFDDAQRQATKDAATLAGLNVLR 180
Query: 798 LLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDD 857
LLNEPT+AAIAY LD N EGIFAVYDLGGGTFDISILK GVF+VLS GGDS LGGDD
Sbjct: 181 LLNEPTAAAIAYGLD-NASEGIFAVYDLGGGTFDISILKLTKGVFEVLSTGGDSALGGDD 239
Query: 858 FDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITID 917
FD+ L WI+++A L LS +D ++LM+K+RE KELLS ++ ++ L + V++T+
Sbjct: 240 FDHRLLCWIIEHAKLAPLSIEDTSLLMVKAREAKELLSTKAETSIDAALKSGEEVHLTLS 299
Query: 918 MKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTL 977
+F +TQHLV +T+ S KAL DA+LT+ DI+ V+LVGG+TRM + + V +FF++T
Sbjct: 300 ATEFVKLTQHLVAKTLTPSRKALRDASLTVDDIDGVVLVGGATRMPQVRKSVGDFFQSTP 359
Query: 978 LTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTI 1037
L +IDPDK V GAAIQAN L+GNR D++LLLDVIPLSLGIET+GGLVEK+I RN+TI
Sbjct: 360 LANIDPDKVVALGAAIQANLLAGNRASGDDWLLLDVIPLSLGIETMGGLVEKVIPRNSTI 419
Query: 1038 PCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQV 1097
PC+ + EFTTFKD QTA+A+ +VQGE ELV +C+ LA FELR IPPM AG ARI+VTYQV
Sbjct: 420 PCARAQEFTTFKDGQTALAVHIVQGERELVTDCRSLARFELRGIPPMAAGAARIRVTYQV 479
Query: 1098 DADGLLSIFAYEKISGKKKFITIKPFYNMNLDEI 1131
DADGLLS+ A E SG + I +KP Y + +++
Sbjct: 480 DADGLLSVSARELRSGVEASIAVKPSYGLADEQV 513
|
Source: Oxalobacteraceae bacterium IMCC9480 Species: Oxalobacteraceae bacterium IMCC9480 Genus: Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|409406872|ref|ZP_11255334.1| cysteine desulfurase [Herbaspirillum sp. GW103] gi|386435421|gb|EIJ48246.1| cysteine desulfurase [Herbaspirillum sp. GW103] | Back alignment and taxonomy information |
|---|
Score = 614 bits (1584), Expect = e-172, Method: Compositional matrix adjust.
Identities = 286/369 (77%), Positives = 327/369 (88%), Gaps = 1/369 (0%)
Query: 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
MDYSATTP+DPRV DKMIPYLR QFGNPASR+H+YGWTAEKA+E+AR EVA+L+ AD RE
Sbjct: 22 MDYSATTPVDPRVADKMIPYLREQFGNPASRSHMYGWTAEKAVEEAREEVAKLVNADSRE 81
Query: 61 IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN 120
IIWTSGATESNNLAIKGAA FYK +GKHIITV+TEHK+VLD+ R+LE GF TYL+P++
Sbjct: 82 IIWTSGATESNNLAIKGAAQFYKSKGKHIITVKTEHKAVLDTFRELERVGFEATYLQPQD 141
Query: 121 NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKI 180
NGL+T+ Q+ + DTILVSVMLVNNEIGVIQP+ EIGE CRSKG+IFH DAAQA GK+
Sbjct: 142 NGLVTVEQIAAAVRPDTILVSVMLVNNEIGVIQPVPEIGEFCRSKGIIFHSDAAQATGKV 201
Query: 181 DINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQ 240
I+++N+KVDLMSFSAHK YGPKGIGALY+RR PR RIEAQ+HGGGHE GLRSGTLATHQ
Sbjct: 202 KIDLENWKVDLMSFSAHKSYGPKGIGALYVRRKPRVRIEAQMHGGGHERGLRSGTLATHQ 261
Query: 241 IVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF 300
IVGMGEAFRLAR EM EL I L+ RL GL E IEE YINGDM++R+PHNLN+SFN+
Sbjct: 262 IVGMGEAFRLAREEMDTELAHIRALRDRLAKGLQE-IEETYINGDMDHRVPHNLNVSFNY 320
Query: 301 IEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEID 360
+EGESL+MAIKDIAVSSGSACTSASLEPSYVLRALG +DELAHSSIRFTIGRFTTE++ID
Sbjct: 321 VEGESLIMAIKDIAVSSGSACTSASLEPSYVLRALGRSDELAHSSIRFTIGRFTTEEDID 380
Query: 361 FTIKLLKMK 369
FTI+L+K K
Sbjct: 381 FTIELIKSK 389
|
Source: Herbaspirillum sp. GW103 Species: Herbaspirillum sp. GW103 Genus: Herbaspirillum Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|399019488|ref|ZP_10721636.1| cysteine desulfurase IscS [Herbaspirillum sp. CF444] gi|398098098|gb|EJL88391.1| cysteine desulfurase IscS [Herbaspirillum sp. CF444] | Back alignment and taxonomy information |
|---|
Score = 613 bits (1582), Expect = e-172, Method: Compositional matrix adjust.
Identities = 284/369 (76%), Positives = 325/369 (88%), Gaps = 1/369 (0%)
Query: 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
+DYSATTP+DPRV DKMIPYLR QFGNPASR+H+YGWTAEKA+E AR EVA+L+ AD RE
Sbjct: 22 LDYSATTPVDPRVADKMIPYLREQFGNPASRSHMYGWTAEKAVEDAREEVAKLVNADSRE 81
Query: 61 IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN 120
IIWTSGATESNNLAIKGAA FYK +GKHIITV+TEHK+VLD+ R+LE GF TYL+P++
Sbjct: 82 IIWTSGATESNNLAIKGAAQFYKTKGKHIITVKTEHKAVLDTFRELERQGFEATYLQPQD 141
Query: 121 NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKI 180
NGL+T+ Q+ + DTIL+SVMLVNNEIGVIQP+ EIGE CRSKG+IFHCDAAQA GK+
Sbjct: 142 NGLVTVEQIAAAVRPDTILISVMLVNNEIGVIQPVPEIGEFCRSKGIIFHCDAAQATGKV 201
Query: 181 DINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQ 240
I+++N+KVDLMSFSAHK YGPKGIGALY+RR PR RIEAQIHGGGHE GLRSGTLATHQ
Sbjct: 202 KIDLENWKVDLMSFSAHKTYGPKGIGALYVRRKPRVRIEAQIHGGGHERGLRSGTLATHQ 261
Query: 241 IVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF 300
IVGMGEAFR+AR EM EL I ++ RL GL E IEE YINGDM +R+PHNLN+SFN+
Sbjct: 262 IVGMGEAFRIAREEMDTELAHIRAMRDRLAKGLQE-IEETYINGDMEHRVPHNLNVSFNY 320
Query: 301 IEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEID 360
+EGESL+MAIKDIAVSSGSACTSASLEPSYVLRALG +DELAHSSIRFTIGRFTTE++ID
Sbjct: 321 VEGESLIMAIKDIAVSSGSACTSASLEPSYVLRALGRSDELAHSSIRFTIGRFTTEEDID 380
Query: 361 FTIKLLKMK 369
FTI L+K K
Sbjct: 381 FTIDLIKSK 389
|
Source: Herbaspirillum sp. CF444 Species: Herbaspirillum sp. CF444 Genus: Herbaspirillum Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|398834079|ref|ZP_10592027.1| cysteine desulfurase IscS [Herbaspirillum sp. YR522] gi|398220600|gb|EJN07044.1| cysteine desulfurase IscS [Herbaspirillum sp. YR522] | Back alignment and taxonomy information |
|---|
Score = 613 bits (1581), Expect = e-172, Method: Compositional matrix adjust.
Identities = 281/369 (76%), Positives = 329/369 (89%), Gaps = 1/369 (0%)
Query: 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
MDYSATTP+DPRV DKMIPYLR QFGNPASR+H+YGW+AEKA+E+AR EVA+L+ AD RE
Sbjct: 22 MDYSATTPVDPRVADKMIPYLREQFGNPASRSHMYGWSAEKAVEEAREEVARLVNADSRE 81
Query: 61 IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN 120
IIWTSGATESNNLAIKGAA FYK +G+HIITV+TEHK+VLD+ R+LE GF TYL+P++
Sbjct: 82 IIWTSGATESNNLAIKGAAQFYKTKGRHIITVKTEHKAVLDTFRELERQGFEATYLQPQD 141
Query: 121 NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKI 180
NGL+++ + + + +DTILVSVMLVNNEIGVIQP+ EIGE CRSKG+IFHCDAAQA GK+
Sbjct: 142 NGLVSVDDIAKAVRADTILVSVMLVNNEIGVIQPVAEIGEFCRSKGIIFHCDAAQATGKV 201
Query: 181 DINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQ 240
I+++ +K+DLMSFSAHK YGPKGIGALY+RR PR RIEAQIHGGGHE GLRSGTLATHQ
Sbjct: 202 KIDLEQWKIDLMSFSAHKTYGPKGIGALYVRRKPRVRIEAQIHGGGHERGLRSGTLATHQ 261
Query: 241 IVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF 300
IVGMGEAFRLAR EM+ EL+ I L+ RL GL + IEE YINGDM++R+PHNLN+SFN+
Sbjct: 262 IVGMGEAFRLAREEMESELQHIRTLRDRLARGL-QQIEETYINGDMDHRVPHNLNVSFNY 320
Query: 301 IEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEID 360
+EGESL+MAIKDIAVSSGSACTSASLEPSYVLRALG +DELAHSSIRFTIGRFTTE++ID
Sbjct: 321 VEGESLIMAIKDIAVSSGSACTSASLEPSYVLRALGRSDELAHSSIRFTIGRFTTEEDID 380
Query: 361 FTIKLLKMK 369
FTI L+K K
Sbjct: 381 FTIDLIKSK 389
|
Source: Herbaspirillum sp. YR522 Species: Herbaspirillum sp. YR522 Genus: Herbaspirillum Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|415916354|ref|ZP_11553975.1| Cysteine desulfurase [Herbaspirillum frisingense GSF30] gi|407761523|gb|EKF70572.1| Cysteine desulfurase [Herbaspirillum frisingense GSF30] | Back alignment and taxonomy information |
|---|
Score = 612 bits (1577), Expect = e-171, Method: Compositional matrix adjust.
Identities = 284/369 (76%), Positives = 325/369 (88%), Gaps = 1/369 (0%)
Query: 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
MDYSATTP+DPRV DKMIPYLR QFGNPASR+H+YGWTAEKA+E+AR EVA+L+ AD RE
Sbjct: 22 MDYSATTPVDPRVADKMIPYLREQFGNPASRSHMYGWTAEKAVEEAREEVAKLVNADSRE 81
Query: 61 IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN 120
IIWTSGATESNNLAIKGAA FYK +GKHIITV+TEHK+VLD+ R+LE GF TYL+P++
Sbjct: 82 IIWTSGATESNNLAIKGAAQFYKSKGKHIITVKTEHKAVLDTFRELERVGFEATYLQPQD 141
Query: 121 NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKI 180
NGL+T+ Q+ + DTILVSVMLVNNEIGVIQP+ EIGE CRSKG+IFH DAAQA GK+
Sbjct: 142 NGLVTVEQIAAAVRPDTILVSVMLVNNEIGVIQPVPEIGEFCRSKGIIFHSDAAQATGKV 201
Query: 181 DINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQ 240
I+++N+KVDLMSFSAHK YGPKGIGALY+RR PR RIEAQ+HGGGHE GLRSGTLATHQ
Sbjct: 202 KIDLENWKVDLMSFSAHKSYGPKGIGALYVRRKPRVRIEAQMHGGGHERGLRSGTLATHQ 261
Query: 241 IVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF 300
IVGMGEAFR+AR EM EL I ++ RL GL E IEE YINGDM +R+PHNLN+SFN+
Sbjct: 262 IVGMGEAFRIAREEMDSELAHIRAMRDRLAKGLQE-IEETYINGDMEHRVPHNLNVSFNY 320
Query: 301 IEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEID 360
+EGESL+MAIKDIAVSSGSACTSASLEPSYVLRALG +DELAHSSIRFTIGRFTTE++ID
Sbjct: 321 VEGESLIMAIKDIAVSSGSACTSASLEPSYVLRALGRSDELAHSSIRFTIGRFTTEEDID 380
Query: 361 FTIKLLKMK 369
FTI L+K K
Sbjct: 381 FTIDLIKSK 389
|
Source: Herbaspirillum frisingense GSF30 Species: Herbaspirillum frisingense Genus: Herbaspirillum Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2602 | ||||||
| UNIPROTKB|P0A6B7 | 404 | iscS "cysteine desulfurase mon | 0.140 | 0.905 | 0.663 | 3.3e-134 | |
| UNIPROTKB|Q9KTY2 | 404 | iscS "Cysteine desulfurase" [V | 0.150 | 0.970 | 0.627 | 6.2e-133 | |
| TIGR_CMR|VC_0748 | 404 | VC_0748 "aminotransferase NifS | 0.150 | 0.970 | 0.627 | 6.2e-133 | |
| TIGR_CMR|SO_2264 | 404 | SO_2264 "cysteine desulfurase" | 0.140 | 0.903 | 0.671 | 1.5e-131 | |
| UNIPROTKB|Q486Z0 | 404 | iscS "Cysteine desulfurase" [C | 0.140 | 0.903 | 0.671 | 1.5e-131 | |
| TIGR_CMR|CPS_1132 | 404 | CPS_1132 "cysteine desulfurase | 0.140 | 0.903 | 0.671 | 1.5e-131 | |
| TIGR_CMR|SO_2268 | 620 | SO_2268 "chaperone protein Hsc | 0.195 | 0.820 | 0.498 | 1e-119 | |
| UNIPROTKB|Q9Y697 | 457 | NFS1 "Cysteine desulfurase, mi | 0.139 | 0.796 | 0.618 | 8.6e-118 | |
| ZFIN|ZDB-GENE-060405-1 | 451 | nfs1 "NFS1 nitrogen fixation 1 | 0.139 | 0.802 | 0.621 | 8.6e-118 | |
| UNIPROTKB|A5PKG4 | 457 | NFS1 "Uncharacterized protein" | 0.139 | 0.796 | 0.620 | 1.4e-117 |
| UNIPROTKB|P0A6B7 iscS "cysteine desulfurase monomer" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 1328 (472.5 bits), Expect = 3.3e-134, P = 3.3e-134
Identities = 245/369 (66%), Positives = 317/369 (85%)
Query: 1 MDYSATTPIDPRVVDKMIPYLRVQ--FGNPASRNHIYGWTAEKAIEKARNEVAQLIYADP 58
+DYSATTP+DPRV +KM+ ++ + FGNPASR+H +GW AE+A++ ARN++A L+ ADP
Sbjct: 7 LDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADP 66
Query: 59 REIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP 118
REI++TSGATES+NLAIKGAA+FY+K+GKHIIT +TEHK+VLD+ R+LE +GF VTYL P
Sbjct: 67 REIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAP 126
Query: 119 KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVG 178
+ NG+I L +LE + DTILVS+M VNNEIGV+Q I IGE+CR++G+I+H DA Q+VG
Sbjct: 127 QRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVG 186
Query: 179 KIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLAT 238
K+ I++ KVDLMSFS HKIYGPKGIGALY+RR PR RIEAQ+HGGGHE G+RSGTL
Sbjct: 187 KLPIDLSQLKVDLMSFSGHKIYGPKGIGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPV 246
Query: 239 HQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISF 298
HQIVGMGEA+R+A+ EM E++R+ L+ RL+NG+ + IEE+Y+NGD+ + P+ LN+SF
Sbjct: 247 HQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIKD-IEEVYLNGDLEHGAPNILNVSF 305
Query: 299 NFIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKE 358
N++EGESL+MA+KD+AVSSGSACTSASLEPSYVLRALG NDELAHSSIRF++GRFTTE+E
Sbjct: 306 NYVEGESLIMALKDLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEE 365
Query: 359 IDFTIKLLK 367
ID+TI+L++
Sbjct: 366 IDYTIELVR 374
|
|
| UNIPROTKB|Q9KTY2 iscS "Cysteine desulfurase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 1316 (468.3 bits), Expect = 6.2e-133, P = 6.2e-133
Identities = 248/395 (62%), Positives = 320/395 (81%)
Query: 1 MDYSATTPIDPRVVDKMIPYLRVQ--FGNPASRNHIYGWTAEKAIEKARNEVAQLIYADP 58
+DYSAT P+DPRV +KM+ Y+ + FGNPASR+H YGW AE+A++ AR ++A L+ ADP
Sbjct: 7 LDYSATCPVDPRVAEKMVQYMTMDGTFGNPASRSHRYGWQAEEAVDTAREQIAALLNADP 66
Query: 59 REIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP 118
REI++TSGATES+NLAIKG AHFY K+GKHIIT +TEHK+VLD++R+LE +GF VTYL P
Sbjct: 67 REIVFTSGATESDNLAIKGVAHFYNKQGKHIITSKTEHKAVLDTMRQLEREGFEVTYLDP 126
Query: 119 KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVG 178
++NGL+ L++LE + DTILVS+M VNNEIGV+Q I IGELCRS+ V+FH DAAQ+ G
Sbjct: 127 ESNGLVDLAKLEAAMRDDTILVSIMHVNNEIGVVQDIAAIGELCRSRKVVFHVDAAQSAG 186
Query: 179 KIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLAT 238
K+ I++Q KVDL+S SAHK YGPKGIGALY+RR PR R+EAQ+HGGGHE G RSGTL T
Sbjct: 187 KVAIDVQEMKVDLISLSAHKAYGPKGIGALYVRRKPRIRLEAQMHGGGHERGFRSGTLPT 246
Query: 239 HQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISF 298
HQIVGMGEAFR+A+ E++++ L L+ RL +G+ + +E + INGD++ R+PHNLN+SF
Sbjct: 247 HQIVGMGEAFRIAKEELQQDYDHALKLRNRLLDGIKD-MEAVTINGDLDQRVPHNLNVSF 305
Query: 299 NFIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKE 358
F+EGESLLMA+KD+AVSSGSACTSASLEPSYVLRALG NDELAHSSIRF+ GRFTTE E
Sbjct: 306 AFVEGESLLMALKDLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSFGRFTTEAE 365
Query: 359 IDFTIKLLKMKEFFMSYSEKVLDHYENPRNVGVFE 393
ID+ I+L+++ + + D Y++ ++ E
Sbjct: 366 IDYAIELIRVAVDKLRAMSPLWDMYKDGVDLNTVE 400
|
|
| TIGR_CMR|VC_0748 VC_0748 "aminotransferase NifS, class V" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 1316 (468.3 bits), Expect = 6.2e-133, P = 6.2e-133
Identities = 248/395 (62%), Positives = 320/395 (81%)
Query: 1 MDYSATTPIDPRVVDKMIPYLRVQ--FGNPASRNHIYGWTAEKAIEKARNEVAQLIYADP 58
+DYSAT P+DPRV +KM+ Y+ + FGNPASR+H YGW AE+A++ AR ++A L+ ADP
Sbjct: 7 LDYSATCPVDPRVAEKMVQYMTMDGTFGNPASRSHRYGWQAEEAVDTAREQIAALLNADP 66
Query: 59 REIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP 118
REI++TSGATES+NLAIKG AHFY K+GKHIIT +TEHK+VLD++R+LE +GF VTYL P
Sbjct: 67 REIVFTSGATESDNLAIKGVAHFYNKQGKHIITSKTEHKAVLDTMRQLEREGFEVTYLDP 126
Query: 119 KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVG 178
++NGL+ L++LE + DTILVS+M VNNEIGV+Q I IGELCRS+ V+FH DAAQ+ G
Sbjct: 127 ESNGLVDLAKLEAAMRDDTILVSIMHVNNEIGVVQDIAAIGELCRSRKVVFHVDAAQSAG 186
Query: 179 KIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLAT 238
K+ I++Q KVDL+S SAHK YGPKGIGALY+RR PR R+EAQ+HGGGHE G RSGTL T
Sbjct: 187 KVAIDVQEMKVDLISLSAHKAYGPKGIGALYVRRKPRIRLEAQMHGGGHERGFRSGTLPT 246
Query: 239 HQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISF 298
HQIVGMGEAFR+A+ E++++ L L+ RL +G+ + +E + INGD++ R+PHNLN+SF
Sbjct: 247 HQIVGMGEAFRIAKEELQQDYDHALKLRNRLLDGIKD-MEAVTINGDLDQRVPHNLNVSF 305
Query: 299 NFIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKE 358
F+EGESLLMA+KD+AVSSGSACTSASLEPSYVLRALG NDELAHSSIRF+ GRFTTE E
Sbjct: 306 AFVEGESLLMALKDLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSFGRFTTEAE 365
Query: 359 IDFTIKLLKMKEFFMSYSEKVLDHYENPRNVGVFE 393
ID+ I+L+++ + + D Y++ ++ E
Sbjct: 366 IDYAIELIRVAVDKLRAMSPLWDMYKDGVDLNTVE 400
|
|
| TIGR_CMR|SO_2264 SO_2264 "cysteine desulfurase" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 1303 (463.7 bits), Expect = 1.5e-131, P = 1.5e-131
Identities = 247/368 (67%), Positives = 309/368 (83%)
Query: 1 MDYSATTPIDPRVVDKMIPYLRVQ--FGNPASRNHIYGWTAEKAIEKARNEVAQLIYADP 58
+DY+ATTP+DPRV +KM Y+ + FGNPASR+H YGW AE+A++ ARN+VA LI AD
Sbjct: 7 LDYAATTPVDPRVAEKMFQYMTMDGIFGNPASRSHRYGWQAEEAVDVARNQVADLINADH 66
Query: 59 REIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP 118
REI++TSGATESNNLAIKG AHFYKK+GKHIIT +TEHK+VLD+ R+LE +GF VTYL+P
Sbjct: 67 REIVFTSGATESNNLAIKGVAHFYKKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLEP 126
Query: 119 KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVG 178
++NG+I +++LE + DTILVS+M VNNEIGVI I IGELCRSKG+IFH DAAQ+ G
Sbjct: 127 ESNGIIPMARLEAAMRDDTILVSIMHVNNEIGVIHDIDAIGELCRSKGIIFHMDAAQSAG 186
Query: 179 KIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLAT 238
K+ I++Q KVDL+S S HK+YGPKGIGALY+RR PR R+EAQ+HGGGHE G+RSGTL T
Sbjct: 187 KLPIDVQATKVDLISISGHKMYGPKGIGALYVRRKPRIRLEAQMHGGGHERGMRSGTLPT 246
Query: 239 HQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISF 298
HQIVG+GEA +A+ EM + RI L+ +L+NG+ + IEE Y+NGDMN R +LN+SF
Sbjct: 247 HQIVGLGEASAIAKAEMATDNVRIAKLRDKLWNGI-KHIEETYVNGDMNQRTSGSLNVSF 305
Query: 299 NFIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKE 358
N++EGESL+MA+KD+AVSSGSACTSASLEPSYVLRALG NDE+AHSSIRF+IGRFTTE+E
Sbjct: 306 NYVEGESLMMALKDLAVSSGSACTSASLEPSYVLRALGLNDEMAHSSIRFSIGRFTTEEE 365
Query: 359 IDFTIKLL 366
ID I+++
Sbjct: 366 IDHAIEVI 373
|
|
| UNIPROTKB|Q486Z0 iscS "Cysteine desulfurase" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 1303 (463.7 bits), Expect = 1.5e-131, P = 1.5e-131
Identities = 247/368 (67%), Positives = 309/368 (83%)
Query: 2 DYSATTPIDPRVVDKMIPYLRVQ--FGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPR 59
DYSATTP+D RV +KM+ Y+ FGNPASR+H +GW AE+A++ ARN++A+LI ADPR
Sbjct: 8 DYSATTPVDKRVAEKMMQYMTNDGHFGNPASRSHKFGWQAEEAVDIARNQIAELINADPR 67
Query: 60 EIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK 119
EI++TSGATESNNLAIKGAA+FY K+GKHIIT +TEHK+VLD+ R+LE GF VTYL P+
Sbjct: 68 EIVFTSGATESNNLAIKGAANFYNKKGKHIITCKTEHKAVLDTCRELERQGFEVTYLDPE 127
Query: 120 NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGK 179
NGLI L++L + + DTILVS+M VNNEIGVIQ I EIGE+CR++ ++FH DAAQ+ GK
Sbjct: 128 ENGLIDLNKLNDAMRDDTILVSIMQVNNEIGVIQDISEIGEMCRARKIVFHVDAAQSAGK 187
Query: 180 IDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATH 239
I+I++Q KVDLMS SAHK+YGPKGIGALY+ R PR R+EAQ HGGGHE G+RSGTLATH
Sbjct: 188 INIDMQALKVDLMSISAHKMYGPKGIGALYVSRKPRIRLEAQTHGGGHERGMRSGTLATH 247
Query: 240 QIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN 299
QIVGMGEA RLA+ EM ++ + ++ RL+ GL S+E+++INGD + R P NLN+SFN
Sbjct: 248 QIVGMGEACRLAKEEMAQDQAHVTAMRDRLWAGL-NSMEQVFINGDADKRYPGNLNVSFN 306
Query: 300 FIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEI 359
F+EGESL+MA+KD+AVSSGSACTSASLEPSYVLRALG NDE+AHSSIRF+ GRFTT +EI
Sbjct: 307 FVEGESLIMALKDLAVSSGSACTSASLEPSYVLRALGLNDEMAHSSIRFSFGRFTTTEEI 366
Query: 360 DFTIKLLK 367
D+ I+L+K
Sbjct: 367 DYAIELIK 374
|
|
| TIGR_CMR|CPS_1132 CPS_1132 "cysteine desulfurase" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 1303 (463.7 bits), Expect = 1.5e-131, P = 1.5e-131
Identities = 247/368 (67%), Positives = 309/368 (83%)
Query: 2 DYSATTPIDPRVVDKMIPYLRVQ--FGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPR 59
DYSATTP+D RV +KM+ Y+ FGNPASR+H +GW AE+A++ ARN++A+LI ADPR
Sbjct: 8 DYSATTPVDKRVAEKMMQYMTNDGHFGNPASRSHKFGWQAEEAVDIARNQIAELINADPR 67
Query: 60 EIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK 119
EI++TSGATESNNLAIKGAA+FY K+GKHIIT +TEHK+VLD+ R+LE GF VTYL P+
Sbjct: 68 EIVFTSGATESNNLAIKGAANFYNKKGKHIITCKTEHKAVLDTCRELERQGFEVTYLDPE 127
Query: 120 NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGK 179
NGLI L++L + + DTILVS+M VNNEIGVIQ I EIGE+CR++ ++FH DAAQ+ GK
Sbjct: 128 ENGLIDLNKLNDAMRDDTILVSIMQVNNEIGVIQDISEIGEMCRARKIVFHVDAAQSAGK 187
Query: 180 IDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATH 239
I+I++Q KVDLMS SAHK+YGPKGIGALY+ R PR R+EAQ HGGGHE G+RSGTLATH
Sbjct: 188 INIDMQALKVDLMSISAHKMYGPKGIGALYVSRKPRIRLEAQTHGGGHERGMRSGTLATH 247
Query: 240 QIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN 299
QIVGMGEA RLA+ EM ++ + ++ RL+ GL S+E+++INGD + R P NLN+SFN
Sbjct: 248 QIVGMGEACRLAKEEMAQDQAHVTAMRDRLWAGL-NSMEQVFINGDADKRYPGNLNVSFN 306
Query: 300 FIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEI 359
F+EGESL+MA+KD+AVSSGSACTSASLEPSYVLRALG NDE+AHSSIRF+ GRFTT +EI
Sbjct: 307 FVEGESLIMALKDLAVSSGSACTSASLEPSYVLRALGLNDEMAHSSIRFSFGRFTTTEEI 366
Query: 360 DFTIKLLK 367
D+ I+L+K
Sbjct: 367 DYAIELIK 374
|
|
| TIGR_CMR|SO_2268 SO_2268 "chaperone protein HscA" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 1192 (424.7 bits), Expect = 1.0e-119, P = 1.0e-119
Identities = 257/516 (49%), Positives = 349/516 (67%)
Query: 620 MALLQISEPDDISVKNKC-VSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYL 678
MALLQI+EP + ++ +++GID GTTNSLVA VR+ + L D+ G +PSIVRY
Sbjct: 1 MALLQIAEPGQSAAPHQHRLAVGIDLGTTNSLVAAVRSGVTATLPDENGQHSLPSIVRYT 60
Query: 679 PDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNINTN--SFPYDFQ-NKFGMLHIKT 735
+G I VG A ++ DPKNTI S+KRF+ R L +I + SFPY F+ ++ G+ T
Sbjct: 61 QEG-IEVGYVAAMSSAQDPKNTIVSVKRFMGRSLTDIQSGEQSFPYQFEASENGLPLFVT 119
Query: 736 ISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNV 795
G+ +P+++SA+I L + AE + + GAVITVPAYF+D QRQ TK+AA L G+ V
Sbjct: 120 PQGLVNPVQVSAEILRPLIERAEKTLGGELQGAVITVPAYFDDAQRQGTKDAASLLGVKV 179
Query: 796 LRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGG 855
LRLLNEPT+AAIAY LD EG+ A+YDLGGGTFDISIL+ GVF+VL+ GGDS LGG
Sbjct: 180 LRLLNEPTAAAIAYGLDSKQ-EGVIAIYDLGGGTFDISILRLNRGVFEVLATGGDSALGG 238
Query: 856 DDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNIT 915
DDFD+ L + +++ L + + L+I++R +KE L+Y S + ++ L+D ++
Sbjct: 239 DDFDHLLQAHMLQVWQLTDIDSQLSRQLLIEARRVKEALTYASDTEASLTLADGSVLKQV 298
Query: 916 IDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKT 975
+ QF + LV +TI + L DA +T ++ ++VGGSTR+ + E V FF
Sbjct: 299 VTKAQFEGLIAALVKKTIASCRRTLRDAGVTADEVLETVMVGGSTRVPLVREQVEAFFGK 358
Query: 976 TLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNT 1035
LTSIDPD+ V GAAIQA+ L GN+ + LLLDVIPLSLGIET+GGLVEK++ RNT
Sbjct: 359 APLTSIDPDRVVAIGAAIQADILVGNKP-ESELLLLDVIPLSLGIETMGGLVEKVVSRNT 417
Query: 1036 TIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTY 1095
TIP + + EFTTFKD QTA+A VVQGE ELV +C+ LA F L+ IPP+ AG A I+VT+
Sbjct: 418 TIPVARAQEFTTFKDGQTAMAFHVVQGERELVDDCRSLARFTLKGIPPLAAGAAHIRVTF 477
Query: 1096 QVDADGLLSIFAYEKISGKKKFITIKPFYNMNLDEI 1131
QVDADGLLS+ A EK +G + I +KP + ++ EI
Sbjct: 478 QVDADGLLSVTAMEKSTGVQSSIQVKPSFGLSDSEI 513
|
|
| UNIPROTKB|Q9Y697 NFS1 "Cysteine desulfurase, mitochondrial" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1174 (418.3 bits), Expect = 8.6e-118, P = 8.6e-118
Identities = 225/364 (61%), Positives = 285/364 (78%)
Query: 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
MD ATTP+DPRV+D M+PYL +GNP SR H YGW +E A+E+AR +VA LI ADPRE
Sbjct: 61 MDVQATTPLDPRVLDAMLPYLINYYGNPHSRTHAYGWESEAAMERARQQVASLIGADPRE 120
Query: 61 IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN 120
II+TSGATESNN+AIKG A FY+ R KH+IT QTEHK VLDS R LE +GF+VTYL +
Sbjct: 121 IIFTSGATESNNIAIKGVARFYRSRKKHLITTQTEHKCVLDSCRSLEAEGFQVTYLPVQK 180
Query: 121 NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKI 180
+G+I L +LE I DT LVSVM VNNEIGV QPI EIG +C S+ V FH DAAQAVGKI
Sbjct: 181 SGIIDLKELEAAIQPDTSLVSVMTVNNEIGVKQPIAEIGRICSSRKVYFHTDAAQAVGKI 240
Query: 181 DINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQ 240
+++ + K+DLMS S HKIYGPKG+GA+YIRR PR R+EA GGG E G+RSGT+ T
Sbjct: 241 PLDVNDMKIDLMSISGHKIYGPKGVGAIYIRRRPRVRVEALQSGGGQERGMRSGTVPTPL 300
Query: 241 IVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF 300
+VG+G A +A+ EM+ + KRI L +RL +M+S+ ++ +NGD + P +N+SF +
Sbjct: 301 VVGLGAACEVAQQEMEYDHKRISKLSERLIQNIMKSLPDVVMNGDPKHHYPGCINLSFAY 360
Query: 301 IEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEID 360
+EGESLLMA+KD+A+SSGSACTSASLEPSYVLRA+G +++LAHSSIRF IGRFTTE+E+D
Sbjct: 361 VEGESLLMALKDVALSSGSACTSASLEPSYVLRAIGTDEDLAHSSIRFGIGRFTTEEEVD 420
Query: 361 FTIK 364
+T++
Sbjct: 421 YTVE 424
|
|
| ZFIN|ZDB-GENE-060405-1 nfs1 "NFS1 nitrogen fixation 1 (S. cerevisiae)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1174 (418.3 bits), Expect = 8.6e-118, P = 8.6e-118
Identities = 225/362 (62%), Positives = 281/362 (77%)
Query: 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
MD+ ATTP+DPRV+D M+PY +GNP SR H YGW +E A+EKAR +VA LI ADPRE
Sbjct: 55 MDFQATTPMDPRVLDAMLPYQVNYYGNPHSRTHAYGWESESAMEKARKQVAGLIGADPRE 114
Query: 61 IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN 120
I++TSGATESNN++IKG A FYK + HIIT Q EHK VLDS R LE +GF +TYL K+
Sbjct: 115 IVFTSGATESNNMSIKGVARFYKAKKMHIITTQIEHKCVLDSCRVLETEGFDITYLPVKS 174
Query: 121 NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKI 180
NGLI L QLE+ I DT LVS+M +NNEIGV QP+ EIG LCRSK V FH DAAQAVGKI
Sbjct: 175 NGLIDLKQLEDTIRPDTSLVSIMAINNEIGVKQPVKEIGHLCRSKNVFFHTDAAQAVGKI 234
Query: 181 DINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQ 240
+++ ++KVDLMS SAHKIYGPKG+GAL++RR PR R+E GGG E GLRSGT+ T
Sbjct: 235 PVDVTDWKVDLMSISAHKIYGPKGVGALFVRRRPRVRLEPLQSGGGQERGLRSGTVPTPL 294
Query: 241 IVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF 300
VG+G A +A+ E++ + KR+ L RL +M I ++ +NGD + R P +N+SF +
Sbjct: 295 AVGLGAACEIAQQELEYDHKRVSLLANRLVQKIMSEIPDVVMNGDPDQRYPGCINLSFAY 354
Query: 301 IEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEID 360
+EGESLLMA+KD+A+SSGSACTSASLEPSYVLRA+G +++LAHSSIRF IGRFTTE+E+D
Sbjct: 355 VEGESLLMALKDVALSSGSACTSASLEPSYVLRAIGADEDLAHSSIRFGIGRFTTEEEVD 414
Query: 361 FT 362
+T
Sbjct: 415 YT 416
|
|
| UNIPROTKB|A5PKG4 NFS1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1172 (417.6 bits), Expect = 1.4e-117, P = 1.4e-117
Identities = 226/364 (62%), Positives = 285/364 (78%)
Query: 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
MD ATTP+DPRV+D M+PYL +GNP SR H YGW +E A+E AR +VA LI ADPRE
Sbjct: 61 MDVQATTPLDPRVLDAMLPYLVNYYGNPHSRTHAYGWESEAAMECARQQVASLIGADPRE 120
Query: 61 IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN 120
II+TSGATESNN+AIKG A FY+ R KH+IT QTEHK VLDS R LE +GF+VTYL K
Sbjct: 121 IIFTSGATESNNIAIKGVARFYRSRKKHLITTQTEHKCVLDSCRSLEAEGFKVTYLPVKK 180
Query: 121 NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKI 180
+G+I L +LE I DT LVSVM VNNEIGV QPI EIG++C S+ V FH DAAQAVGKI
Sbjct: 181 SGIIDLKELEAAIQPDTSLVSVMTVNNEIGVKQPIKEIGQICSSRKVYFHTDAAQAVGKI 240
Query: 181 DINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQ 240
+++ + K+DLMS S HKIYGPKG+GA+YIRR PR R+EA GGG E G+RSGT+ T
Sbjct: 241 PLDVNDMKIDLMSISGHKIYGPKGVGAIYIRRRPRVRVEALQSGGGQERGMRSGTVPTPL 300
Query: 241 IVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF 300
+VG+G A +A+ EM+ + KRI L +RL +M+S+ ++ +NGD + P +N+SF +
Sbjct: 301 VVGLGAACEVAQQEMEYDHKRISKLAERLIQKIMKSLPDVVMNGDPEHHYPGCINLSFAY 360
Query: 301 IEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEID 360
+EGESLLMA+KD+A+SSGSACTSASLEPSYVLRA+G +++LAHSSIRF IGRFTTE+E+D
Sbjct: 361 VEGESLLMALKDVALSSGSACTSASLEPSYVLRAIGTDEDLAHSSIRFGIGRFTTEEEVD 420
Query: 361 FTIK 364
+T++
Sbjct: 421 YTVE 424
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q1H361 | ISCS_METFK | 2, ., 8, ., 1, ., 7 | 0.7243 | 0.1414 | 0.9086 | yes | N/A |
| B5R5A2 | ISCS_SALEP | 2, ., 8, ., 1, ., 7 | 0.6666 | 0.1406 | 0.9059 | yes | N/A |
| B5FR85 | ISCS_SALDC | 2, ., 8, ., 1, ., 7 | 0.6666 | 0.1406 | 0.9059 | yes | N/A |
| Q8ZN40 | ISCS_SALTY | 2, ., 8, ., 1, ., 7 | 0.6666 | 0.1406 | 0.9059 | yes | N/A |
| Q7MNG2 | ISCS_VIBVY | 2, ., 8, ., 1, ., 7 | 0.6675 | 0.1410 | 0.9084 | yes | N/A |
| B5RD12 | ISCS_SALG2 | 2, ., 8, ., 1, ., 7 | 0.6666 | 0.1406 | 0.9059 | yes | N/A |
| C3LT01 | ISCS_VIBCM | 2, ., 8, ., 1, ., 7 | 0.6648 | 0.1410 | 0.9084 | yes | N/A |
| B4T0S2 | ISCS_SALNS | 2, ., 8, ., 1, ., 7 | 0.6666 | 0.1406 | 0.9059 | yes | N/A |
| Q9KTY2 | ISCS_VIBCH | 2, ., 8, ., 1, ., 7 | 0.6621 | 0.1410 | 0.9084 | yes | N/A |
| A7MGX8 | ISCS_CROS8 | 2, ., 8, ., 1, ., 7 | 0.6693 | 0.1406 | 0.9059 | yes | N/A |
| Q3SEX4 | HSCA_THIDA | No assigned EC number | 0.5408 | 0.1960 | 0.8225 | yes | N/A |
| Q8DEY7 | ISCS_VIBVU | 2, ., 8, ., 1, ., 7 | 0.6675 | 0.1410 | 0.9084 | yes | N/A |
| B5BAW6 | ISCS_SALPK | 2, ., 8, ., 1, ., 7 | 0.6666 | 0.1406 | 0.9059 | yes | N/A |
| B4TDB6 | ISCS_SALHS | 2, ., 8, ., 1, ., 7 | 0.6666 | 0.1406 | 0.9059 | yes | N/A |
| Q60C64 | ISCS_METCA | 2, ., 8, ., 1, ., 7 | 0.6937 | 0.1414 | 0.9131 | yes | N/A |
| Q5PNG1 | ISCS_SALPA | 2, ., 8, ., 1, ., 7 | 0.6666 | 0.1406 | 0.9059 | yes | N/A |
| A9N1X5 | ISCS_SALPB | 2, ., 8, ., 1, ., 7 | 0.6666 | 0.1406 | 0.9059 | yes | N/A |
| A5F3G4 | ISCS_VIBC3 | 2, ., 8, ., 1, ., 7 | 0.6621 | 0.1410 | 0.9084 | yes | N/A |
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 2.8.1.7 | LOW CONFIDENCE prediction! |
| 3rd Layer | 2.8.1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 2602 | |||
| PRK05183 | 616 | PRK05183, hscA, chaperone protein HscA; Provisiona | 0.0 | |
| PRK05183 | 616 | PRK05183, hscA, chaperone protein HscA; Provisiona | 0.0 | |
| PRK14012 | 404 | PRK14012, PRK14012, cysteine desulfurase; Provisio | 0.0 | |
| PRK14012 | 404 | PRK14012, PRK14012, cysteine desulfurase; Provisio | 0.0 | |
| TIGR01991 | 599 | TIGR01991, HscA, Fe-S protein assembly chaperone H | 0.0 | |
| TIGR01991 | 599 | TIGR01991, HscA, Fe-S protein assembly chaperone H | 0.0 | |
| TIGR02006 | 402 | TIGR02006, IscS, cysteine desulfurase IscS | 0.0 | |
| TIGR02006 | 402 | TIGR02006, IscS, cysteine desulfurase IscS | 0.0 | |
| COG1104 | 386 | COG1104, NifS, Cysteine sulfinate desulfinase/cyst | 0.0 | |
| COG1104 | 386 | COG1104, NifS, Cysteine sulfinate desulfinase/cyst | 0.0 | |
| PLN02651 | 364 | PLN02651, PLN02651, cysteine desulfurase | 0.0 | |
| PLN02651 | 364 | PLN02651, PLN02651, cysteine desulfurase | 0.0 | |
| pfam00012 | 598 | pfam00012, HSP70, Hsp70 protein | 1e-153 | |
| pfam00012 | 598 | pfam00012, HSP70, Hsp70 protein | 1e-153 | |
| TIGR03402 | 379 | TIGR03402, FeS_nifS, cysteine desulfurase NifS | 1e-150 | |
| COG0443 | 579 | COG0443, DnaK, Molecular chaperone [Posttranslatio | 1e-149 | |
| COG0443 | 579 | COG0443, DnaK, Molecular chaperone [Posttranslatio | 1e-149 | |
| TIGR03402 | 379 | TIGR03402, FeS_nifS, cysteine desulfurase NifS | 1e-148 | |
| cd10236 | 355 | cd10236, HscA_like_NBD, Nucleotide-binding domain | 1e-141 | |
| cd10236 | 355 | cd10236, HscA_like_NBD, Nucleotide-binding domain | 1e-141 | |
| TIGR02350 | 595 | TIGR02350, prok_dnaK, chaperone protein DnaK | 1e-139 | |
| TIGR02350 | 595 | TIGR02350, prok_dnaK, chaperone protein DnaK | 1e-139 | |
| PRK00290 | 627 | PRK00290, dnaK, molecular chaperone DnaK; Provisio | 1e-137 | |
| PRK00290 | 627 | PRK00290, dnaK, molecular chaperone DnaK; Provisio | 1e-137 | |
| TIGR03235 | 353 | TIGR03235, DNA_S_dndA, cysteine desulfurase DndA | 1e-128 | |
| TIGR03235 | 353 | TIGR03235, DNA_S_dndA, cysteine desulfurase DndA | 1e-127 | |
| PRK13411 | 653 | PRK13411, PRK13411, molecular chaperone DnaK; Prov | 1e-120 | |
| PRK13411 | 653 | PRK13411, PRK13411, molecular chaperone DnaK; Prov | 1e-120 | |
| CHL00094 | 621 | CHL00094, dnaK, heat shock protein 70 | 1e-119 | |
| CHL00094 | 621 | CHL00094, dnaK, heat shock protein 70 | 1e-119 | |
| PRK01433 | 595 | PRK01433, hscA, chaperone protein HscA; Provisiona | 1e-117 | |
| PRK01433 | 595 | PRK01433, hscA, chaperone protein HscA; Provisiona | 1e-117 | |
| PRK13410 | 668 | PRK13410, PRK13410, molecular chaperone DnaK; Prov | 1e-115 | |
| PRK13410 | 668 | PRK13410, PRK13410, molecular chaperone DnaK; Prov | 1e-115 | |
| PTZ00400 | 663 | PTZ00400, PTZ00400, DnaK-type molecular chaperone; | 1e-113 | |
| PTZ00400 | 663 | PTZ00400, PTZ00400, DnaK-type molecular chaperone; | 1e-113 | |
| PLN03184 | 673 | PLN03184, PLN03184, chloroplast Hsp70; Provisional | 1e-112 | |
| PLN03184 | 673 | PLN03184, PLN03184, chloroplast Hsp70; Provisional | 1e-112 | |
| cd10170 | 369 | cd10170, HSP70_NBD, Nucleotide-binding domain of t | 1e-108 | |
| cd10170 | 369 | cd10170, HSP70_NBD, Nucleotide-binding domain of t | 1e-108 | |
| PTZ00186 | 657 | PTZ00186, PTZ00186, heat shock 70 kDa precursor pr | 1e-103 | |
| PTZ00186 | 657 | PTZ00186, PTZ00186, heat shock 70 kDa precursor pr | 1e-103 | |
| TIGR03403 | 382 | TIGR03403, nifS_epsilon, cysteine desulfurase, Nif | 1e-102 | |
| TIGR03403 | 382 | TIGR03403, nifS_epsilon, cysteine desulfurase, Nif | 1e-101 | |
| PTZ00009 | 653 | PTZ00009, PTZ00009, heat shock 70 kDa protein; Pro | 1e-101 | |
| PTZ00009 | 653 | PTZ00009, PTZ00009, heat shock 70 kDa protein; Pro | 1e-101 | |
| cd10234 | 376 | cd10234, HSPA9-Ssq1-like_NBD, Nucleotide-binding d | 4e-95 | |
| cd10234 | 376 | cd10234, HSPA9-Ssq1-like_NBD, Nucleotide-binding d | 4e-95 | |
| pfam00266 | 370 | pfam00266, Aminotran_5, Aminotransferase class-V | 4e-92 | |
| cd10235 | 339 | cd10235, HscC_like_NBD, Nucleotide-binding domain | 1e-91 | |
| cd10235 | 339 | cd10235, HscC_like_NBD, Nucleotide-binding domain | 1e-91 | |
| pfam00266 | 370 | pfam00266, Aminotran_5, Aminotransferase class-V | 4e-91 | |
| cd11733 | 377 | cd11733, HSPA9-like_NBD, Nucleotide-binding domain | 4e-88 | |
| cd11733 | 377 | cd11733, HSPA9-like_NBD, Nucleotide-binding domain | 4e-88 | |
| cd11734 | 373 | cd11734, Ssq1_like_NBD, Nucleotide-binding domain | 5e-86 | |
| cd11734 | 373 | cd11734, Ssq1_like_NBD, Nucleotide-binding domain | 5e-86 | |
| PRK02948 | 381 | PRK02948, PRK02948, cysteine desulfurase; Provisio | 2e-84 | |
| PRK02948 | 381 | PRK02948, PRK02948, cysteine desulfurase; Provisio | 3e-82 | |
| cd10241 | 374 | cd10241, HSPA5-like_NBD, Nucleotide-binding domain | 1e-79 | |
| cd10241 | 374 | cd10241, HSPA5-like_NBD, Nucleotide-binding domain | 1e-79 | |
| PRK11325 | 127 | PRK11325, PRK11325, scaffold protein; Provisional | 3e-68 | |
| PRK11325 | 127 | PRK11325, PRK11325, scaffold protein; Provisional | 3e-68 | |
| PRK00110 | 245 | PRK00110, PRK00110, hypothetical protein; Validate | 3e-67 | |
| cd10233 | 376 | cd10233, HSPA1-2_6-8-like_NBD, Nucleotide-binding | 1e-66 | |
| cd10233 | 376 | cd10233, HSPA1-2_6-8-like_NBD, Nucleotide-binding | 1e-66 | |
| pfam01709 | 234 | pfam01709, Transcrip_reg, Transcriptional regulato | 5e-63 | |
| cd10237 | 417 | cd10237, HSPA13-like_NBD, Nucleotide-binding domai | 6e-62 | |
| cd10237 | 417 | cd10237, HSPA13-like_NBD, Nucleotide-binding domai | 6e-62 | |
| COG0217 | 241 | COG0217, COG0217, Uncharacterized conserved protei | 5e-59 | |
| COG0520 | 405 | COG0520, csdA, Selenocysteine lyase/Cysteine desul | 1e-56 | |
| TIGR01999 | 124 | TIGR01999, iscU, FeS cluster assembly scaffold Isc | 1e-55 | |
| TIGR01999 | 124 | TIGR01999, iscU, FeS cluster assembly scaffold Isc | 1e-55 | |
| COG0520 | 405 | COG0520, csdA, Selenocysteine lyase/Cysteine desul | 4e-55 | |
| cd10228 | 381 | cd10228, HSPA4_like_NDB, Nucleotide-binding domain | 3e-54 | |
| cd10228 | 381 | cd10228, HSPA4_like_NDB, Nucleotide-binding domain | 3e-54 | |
| cd06453 | 373 | cd06453, SufS_like, Cysteine desulfurase (SufS)-li | 8e-54 | |
| cd06453 | 373 | cd06453, SufS_like, Cysteine desulfurase (SufS)-li | 1e-53 | |
| TIGR01033 | 238 | TIGR01033, TIGR01033, DNA-binding regulatory prote | 1e-51 | |
| PRK12378 | 235 | PRK12378, PRK12378, hypothetical protein; Provisio | 2e-48 | |
| cd10238 | 375 | cd10238, HSPA14-like_NBD, Nucleotide-binding domai | 1e-47 | |
| cd10238 | 375 | cd10238, HSPA14-like_NBD, Nucleotide-binding domai | 1e-47 | |
| pfam01592 | 126 | pfam01592, NifU_N, NifU-like N terminal domain | 4e-47 | |
| pfam01592 | 126 | pfam01592, NifU_N, NifU-like N terminal domain | 4e-47 | |
| TIGR01977 | 376 | TIGR01977, am_tr_V_EF2568, cysteine desulfurase fa | 4e-46 | |
| TIGR01977 | 376 | TIGR01977, am_tr_V_EF2568, cysteine desulfurase fa | 3e-45 | |
| cd10230 | 388 | cd10230, HYOU1-like_NBD, Nucleotide-binding domain | 2e-42 | |
| cd10230 | 388 | cd10230, HYOU1-like_NBD, Nucleotide-binding domain | 2e-42 | |
| TIGR01979 | 403 | TIGR01979, sufS, cysteine desulfurases, SufSfamily | 9e-41 | |
| TIGR01979 | 403 | TIGR01979, sufS, cysteine desulfurases, SufSfamily | 3e-40 | |
| COG0822 | 150 | COG0822, IscU, NifU homolog involved in Fe-S clust | 5e-39 | |
| COG0822 | 150 | COG0822, IscU, NifU homolog involved in Fe-S clust | 5e-39 | |
| cd11739 | 383 | cd11739, HSPH1_NBD, Nucleotide-binding domain of H | 1e-38 | |
| cd11739 | 383 | cd11739, HSPH1_NBD, Nucleotide-binding domain of H | 1e-38 | |
| cd10232 | 386 | cd10232, ScSsz1p_like_NBD, Nucleotide-binding doma | 4e-38 | |
| cd10232 | 386 | cd10232, ScSsz1p_like_NBD, Nucleotide-binding doma | 4e-38 | |
| cd11732 | 377 | cd11732, HSP105-110_like_NBD, Nucleotide-binding d | 5e-38 | |
| cd11732 | 377 | cd11732, HSP105-110_like_NBD, Nucleotide-binding d | 5e-38 | |
| cd06664 | 123 | cd06664, IscU_like, Iron-sulfur cluster scaffold-l | 4e-37 | |
| cd06664 | 123 | cd06664, IscU_like, Iron-sulfur cluster scaffold-l | 4e-37 | |
| TIGR03419 | 121 | TIGR03419, NifU_clost, FeS cluster assembly scaffo | 3e-36 | |
| TIGR03419 | 121 | TIGR03419, NifU_clost, FeS cluster assembly scaffo | 3e-36 | |
| cd11737 | 383 | cd11737, HSPA4_NBD, Nucleotide-binding domain of H | 7e-36 | |
| cd11737 | 383 | cd11737, HSPA4_NBD, Nucleotide-binding domain of H | 7e-36 | |
| TIGR02007 | 110 | TIGR02007, fdx_isc, ferredoxin, 2Fe-2S type, ISC s | 2e-33 | |
| cd11738 | 383 | cd11738, HSPA4L_NBD, Nucleotide-binding domain of | 1e-32 | |
| cd11738 | 383 | cd11738, HSPA4L_NBD, Nucleotide-binding domain of | 1e-32 | |
| TIGR02007 | 110 | TIGR02007, fdx_isc, ferredoxin, 2Fe-2S type, ISC s | 2e-31 | |
| TIGR02000 | 290 | TIGR02000, NifU_proper, Fe-S cluster assembly prot | 3e-29 | |
| TIGR02000 | 290 | TIGR02000, NifU_proper, Fe-S cluster assembly prot | 3e-29 | |
| COG0633 | 102 | COG0633, Fdx, Ferredoxin [Energy production and co | 3e-21 | |
| TIGR03392 | 398 | TIGR03392, FeS_syn_CsdA, cysteine desulfurase, cat | 4e-21 | |
| PRK10874 | 401 | PRK10874, PRK10874, cysteine sulfinate desulfinase | 1e-20 | |
| PRK10874 | 401 | PRK10874, PRK10874, cysteine sulfinate desulfinase | 1e-20 | |
| TIGR03392 | 398 | TIGR03392, FeS_syn_CsdA, cysteine desulfurase, cat | 2e-20 | |
| PLN02855 | 424 | PLN02855, PLN02855, Bifunctional selenocysteine ly | 4e-20 | |
| PLN02855 | 424 | PLN02855, PLN02855, Bifunctional selenocysteine ly | 9e-20 | |
| PRK09295 | 406 | PRK09295, PRK09295, bifunctional cysteine desulfur | 2e-19 | |
| PRK09295 | 406 | PRK09295, PRK09295, bifunctional cysteine desulfur | 2e-19 | |
| COG0633 | 102 | COG0633, Fdx, Ferredoxin [Energy production and co | 1e-18 | |
| pfam01521 | 91 | pfam01521, Fe-S_biosyn, Iron-sulphur cluster biosy | 1e-18 | |
| pfam01521 | 91 | pfam01521, Fe-S_biosyn, Iron-sulphur cluster biosy | 1e-18 | |
| TIGR02011 | 105 | TIGR02011, IscA, iron-sulfur cluster assembly prot | 3e-18 | |
| TIGR02011 | 105 | TIGR02011, IscA, iron-sulfur cluster assembly prot | 3e-18 | |
| TIGR01976 | 397 | TIGR01976, am_tr_V_VC1184, cysteine desulfurase fa | 6e-18 | |
| TIGR01976 | 397 | TIGR01976, am_tr_V_VC1184, cysteine desulfurase fa | 6e-17 | |
| COG0316 | 110 | COG0316, sufA, Fe-S cluster assembly scaffold prot | 2e-16 | |
| COG0316 | 110 | COG0316, sufA, Fe-S cluster assembly scaffold prot | 2e-16 | |
| cd10229 | 404 | cd10229, HSPA12_like_NBD, Nucleotide-binding domai | 6e-16 | |
| cd10229 | 404 | cd10229, HSPA12_like_NBD, Nucleotide-binding domai | 6e-16 | |
| PLN02593 | 117 | PLN02593, PLN02593, adrenodoxin-like ferredoxin pr | 7e-16 | |
| TIGR01994 | 137 | TIGR01994, SUF_scaf_2, SUF system FeS assembly pro | 9e-16 | |
| TIGR01994 | 137 | TIGR01994, SUF_scaf_2, SUF system FeS assembly pro | 9e-16 | |
| PRK09502 | 107 | PRK09502, iscA, iron-sulfur cluster assembly prote | 1e-15 | |
| PRK09502 | 107 | PRK09502, iscA, iron-sulfur cluster assembly prote | 1e-15 | |
| TIGR00049 | 105 | TIGR00049, TIGR00049, Iron-sulfur cluster assembly | 4e-15 | |
| TIGR00049 | 105 | TIGR00049, TIGR00049, Iron-sulfur cluster assembly | 4e-15 | |
| cd10231 | 415 | cd10231, YegD_like, Escherichia coli YegD, a putat | 7e-14 | |
| cd10231 | 415 | cd10231, YegD_like, Escherichia coli YegD, a putat | 7e-14 | |
| PLN02593 | 117 | PLN02593, PLN02593, adrenodoxin-like ferredoxin pr | 1e-13 | |
| PRK03578 | 176 | PRK03578, hscB, co-chaperone HscB; Provisional | 4e-13 | |
| PRK03578 | 176 | PRK03578, hscB, co-chaperone HscB; Provisional | 4e-13 | |
| cd01494 | 170 | cd01494, AAT_I, Aspartate aminotransferase (AAT) s | 1e-12 | |
| cd01494 | 170 | cd01494, AAT_I, Aspartate aminotransferase (AAT) s | 1e-12 | |
| PRK01773 | 173 | PRK01773, hscB, co-chaperone HscB; Provisional | 3e-12 | |
| PRK01773 | 173 | PRK01773, hscB, co-chaperone HscB; Provisional | 3e-12 | |
| COG0076 | 460 | COG0076, GadB, Glutamate decarboxylase and related | 2e-11 | |
| COG0076 | 460 | COG0076, GadB, Glutamate decarboxylase and related | 2e-11 | |
| TIGR00714 | 155 | TIGR00714, hscB, Fe-S protein assembly co-chaperon | 3e-11 | |
| TIGR00714 | 155 | TIGR00714, hscB, Fe-S protein assembly co-chaperon | 3e-11 | |
| PTZ00490 | 143 | PTZ00490, PTZ00490, Ferredoxin superfamily; Provis | 4e-11 | |
| PRK05014 | 171 | PRK05014, hscB, co-chaperone HscB; Provisional | 1e-10 | |
| PRK05014 | 171 | PRK05014, hscB, co-chaperone HscB; Provisional | 1e-10 | |
| TIGR04343 | 370 | TIGR04343, egtE_PLP_lyase, ergothioneine biosynthe | 2e-10 | |
| TIGR04343 | 370 | TIGR04343, egtE_PLP_lyase, ergothioneine biosynthe | 2e-10 | |
| TIGR01997 | 107 | TIGR01997, sufA_proteo, FeS assembly scaffold SufA | 5e-09 | |
| TIGR01997 | 107 | TIGR01997, sufA_proteo, FeS assembly scaffold SufA | 5e-09 | |
| cd00207 | 84 | cd00207, fer2, 2Fe-2S iron-sulfur cluster binding | 6e-09 | |
| COG1076 | 174 | COG1076, DjlA, DnaJ-domain-containing proteins 1 [ | 9e-09 | |
| COG1076 | 174 | COG1076, DjlA, DnaJ-domain-containing proteins 1 [ | 9e-09 | |
| PTZ00490 | 143 | PTZ00490, PTZ00490, Ferredoxin superfamily; Provis | 1e-08 | |
| PRK00294 | 173 | PRK00294, hscB, co-chaperone HscB; Provisional | 8e-08 | |
| PRK00294 | 173 | PRK00294, hscB, co-chaperone HscB; Provisional | 8e-08 | |
| PRK09504 | 122 | PRK09504, sufA, iron-sulfur cluster assembly scaff | 8e-08 | |
| PRK09504 | 122 | PRK09504, sufA, iron-sulfur cluster assembly scaff | 8e-08 | |
| TIGR03301 | 355 | TIGR03301, PhnW-AepZ, 2-aminoethylphosphonate amin | 1e-07 | |
| TIGR03301 | 355 | TIGR03301, PhnW-AepZ, 2-aminoethylphosphonate amin | 1e-07 | |
| TIGR00904 | 333 | TIGR00904, mreB, cell shape determining protein, M | 1e-07 | |
| TIGR00904 | 333 | TIGR00904, mreB, cell shape determining protein, M | 1e-07 | |
| cd06450 | 345 | cd06450, DOPA_deC_like, DOPA decarboxylase family | 2e-07 | |
| cd06450 | 345 | cd06450, DOPA_deC_like, DOPA decarboxylase family | 2e-07 | |
| TIGR03812 | 373 | TIGR03812, tyr_de_CO2_Arch, tyrosine decarboxylase | 5e-07 | |
| TIGR03812 | 373 | TIGR03812, tyr_de_CO2_Arch, tyrosine decarboxylase | 5e-07 | |
| cd00207 | 84 | cd00207, fer2, 2Fe-2S iron-sulfur cluster binding | 2e-06 | |
| COG0075 | 383 | COG0075, COG0075, Serine-pyruvate aminotransferase | 2e-06 | |
| COG0075 | 383 | COG0075, COG0075, Serine-pyruvate aminotransferase | 2e-06 | |
| COG2008 | 342 | COG2008, GLY1, Threonine aldolase [Amino acid tran | 3e-06 | |
| COG2008 | 342 | COG2008, GLY1, Threonine aldolase [Amino acid tran | 3e-06 | |
| pfam00111 | 77 | pfam00111, Fer2, 2Fe-2S iron-sulfur cluster bindin | 3e-06 | |
| PRK13520 | 371 | PRK13520, PRK13520, L-tyrosine decarboxylase; Prov | 5e-06 | |
| PRK13520 | 371 | PRK13520, PRK13520, L-tyrosine decarboxylase; Prov | 5e-06 | |
| cd06451 | 356 | cd06451, AGAT_like, Alanine-glyoxylate aminotransf | 1e-05 | |
| cd06451 | 356 | cd06451, AGAT_like, Alanine-glyoxylate aminotransf | 1e-05 | |
| TIGR02529 | 239 | TIGR02529, EutJ, ethanolamine utilization protein | 2e-05 | |
| TIGR02529 | 239 | TIGR02529, EutJ, ethanolamine utilization protein | 2e-05 | |
| cd10225 | 320 | cd10225, MreB_like, MreB and similar proteins | 3e-05 | |
| cd10225 | 320 | cd10225, MreB_like, MreB and similar proteins | 3e-05 | |
| COG1077 | 342 | COG1077, MreB, Actin-like ATPase involved in cell | 4e-05 | |
| COG1077 | 342 | COG1077, MreB, Actin-like ATPase involved in cell | 4e-05 | |
| PRK15080 | 267 | PRK15080, PRK15080, ethanolamine utilization prote | 4e-05 | |
| PRK15080 | 267 | PRK15080, PRK15080, ethanolamine utilization prote | 4e-05 | |
| pfam00111 | 77 | pfam00111, Fer2, 2Fe-2S iron-sulfur cluster bindin | 2e-04 | |
| pfam06723 | 327 | pfam06723, MreB_Mbl, MreB/Mbl protein | 2e-04 | |
| pfam06723 | 327 | pfam06723, MreB_Mbl, MreB/Mbl protein | 2e-04 | |
| PRK13928 | 336 | PRK13928, PRK13928, rod shape-determining protein | 4e-04 | |
| PRK13928 | 336 | PRK13928, PRK13928, rod shape-determining protein | 4e-04 | |
| PLN03082 | 163 | PLN03082, PLN03082, Iron-sulfur cluster assembly; | 6e-04 | |
| PLN03082 | 163 | PLN03082, PLN03082, Iron-sulfur cluster assembly; | 6e-04 | |
| pfam01212 | 288 | pfam01212, Beta_elim_lyase, Beta-eliminating lyase | 7e-04 | |
| pfam01212 | 288 | pfam01212, Beta_elim_lyase, Beta-eliminating lyase | 7e-04 | |
| COG2871 | 410 | COG2871, NqrF, Na+-transporting NADH:ubiquinone ox | 8e-04 | |
| COG4820 | 277 | COG4820, EutJ, Ethanolamine utilization protein, p | 9e-04 | |
| COG4820 | 277 | COG4820, EutJ, Ethanolamine utilization protein, p | 9e-04 | |
| TIGR02539 | 370 | TIGR02539, SepCysS, O-phospho-L-seryl-tRNA:Cys-tRN | 0.002 | |
| TIGR02539 | 370 | TIGR02539, SepCysS, O-phospho-L-seryl-tRNA:Cys-tRN | 0.002 | |
| PRK13929 | 335 | PRK13929, PRK13929, rod-share determining protein | 0.003 | |
| PRK13929 | 335 | PRK13929, PRK13929, rod-share determining protein | 0.003 | |
| TIGR01941 | 405 | TIGR01941, nqrF, NADH:ubiquinone oxidoreductase, N | 0.004 |
| >gnl|CDD|235360 PRK05183, hscA, chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Score = 749 bits (1936), Expect = 0.0
Identities = 289/517 (55%), Positives = 363/517 (70%), Gaps = 13/517 (2%)
Query: 620 MALLQISEPDDISVKN-KCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYL 678
MALLQISEP + + + +++GID GTTNSLVA VR+ EVL D+ G L+PS+VRYL
Sbjct: 1 MALLQISEPGQSAAPHQRRLAVGIDLGTTNSLVATVRSGQAEVLPDEQGRVLLPSVVRYL 60
Query: 679 PDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNINTN--SFPYDFQ-NKFGMLHIKT 735
DG I VG +A+ DPKNTISS+KRF+ R L +I PY F ++ GM I+T
Sbjct: 61 EDG-IEVGYEARANAAQDPKNTISSVKRFMGRSLADIQQRYPHLPYQFVASENGMPLIRT 119
Query: 736 ISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNV 795
G+KSP+E+SA+I L++ AE + + GAVITVPAYF+D QRQ TK+AA+LAGLNV
Sbjct: 120 AQGLKSPVEVSAEILKALRQRAEETLGGELDGAVITVPAYFDDAQRQATKDAARLAGLNV 179
Query: 796 LRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGG 855
LRLLNEPT+AAIAY LD EG+ AVYDLGGGTFDISIL+ GVF+VL+ GGDS LGG
Sbjct: 180 LRLLNEPTAAAIAYGLDSGQ-EGVIAVYDLGGGTFDISILRLSKGVFEVLATGGDSALGG 238
Query: 856 DDFDYCLFSWIVKNAFLK-KLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNI 914
DDFD+ L WI++ A L +L +D +L+ +R KE LS SV+++V L
Sbjct: 239 DDFDHLLADWILEQAGLSPRLDPEDQRLLLDAARAAKEALSDADSVEVSVALWQG----- 293
Query: 915 TIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFK 974
I +QF + LV RT+L +AL DA + ++ V++VGGSTR+ + E V FF
Sbjct: 294 EITREQFNALIAPLVKRTLLACRRALRDAGVEADEVKEVVMVGGSTRVPLVREAVGEFFG 353
Query: 975 TTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRN 1034
T LTSIDPDK V GAAIQA+ L+GN+ D + LLLDVIPLSLG+ET+GGLVEKII RN
Sbjct: 354 RTPLTSIDPDKVVAIGAAIQADILAGNKP-DSDMLLLDVIPLSLGLETMGGLVEKIIPRN 412
Query: 1035 TTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVT 1094
TTIP + + EFTTFKD QTA+AI VVQGE ELV +C+ LA FELR IPPM AG ARI+VT
Sbjct: 413 TTIPVARAQEFTTFKDGQTAMAIHVVQGERELVADCRSLARFELRGIPPMAAGAARIRVT 472
Query: 1095 YQVDADGLLSIFAYEKISGKKKFITIKPFYNMNLDEI 1131
+QVDADGLLS+ A EK +G + I +KP Y + DEI
Sbjct: 473 FQVDADGLLSVTAMEKSTGVEASIQVKPSYGLTDDEI 509
|
Length = 616 |
| >gnl|CDD|235360 PRK05183, hscA, chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Score = 749 bits (1936), Expect = 0.0
Identities = 289/517 (55%), Positives = 363/517 (70%), Gaps = 13/517 (2%)
Query: 2016 MALLQISEPDDISVKN-KCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYL 2074
MALLQISEP + + + +++GID GTTNSLVA VR+ EVL D+ G L+PS+VRYL
Sbjct: 1 MALLQISEPGQSAAPHQRRLAVGIDLGTTNSLVATVRSGQAEVLPDEQGRVLLPSVVRYL 60
Query: 2075 PDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNINTN--SFPYDFQ-NKFGMLHIKT 2131
DG I VG +A+ DPKNTISS+KRF+ R L +I PY F ++ GM I+T
Sbjct: 61 EDG-IEVGYEARANAAQDPKNTISSVKRFMGRSLADIQQRYPHLPYQFVASENGMPLIRT 119
Query: 2132 ISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNV 2191
G+KSP+E+SA+I L++ AE + + GAVITVPAYF+D QRQ TK+AA+LAGLNV
Sbjct: 120 AQGLKSPVEVSAEILKALRQRAEETLGGELDGAVITVPAYFDDAQRQATKDAARLAGLNV 179
Query: 2192 LRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGG 2251
LRLLNEPT+AAIAY LD EG+ AVYDLGGGTFDISIL+ GVF+VL+ GGDS LGG
Sbjct: 180 LRLLNEPTAAAIAYGLDSGQ-EGVIAVYDLGGGTFDISILRLSKGVFEVLATGGDSALGG 238
Query: 2252 DDFDYCLFSWIVKNAFLK-KLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNI 2310
DDFD+ L WI++ A L +L +D +L+ +R KE LS SV+++V L
Sbjct: 239 DDFDHLLADWILEQAGLSPRLDPEDQRLLLDAARAAKEALSDADSVEVSVALWQG----- 293
Query: 2311 TIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFK 2370
I +QF + LV RT+L +AL DA + ++ V++VGGSTR+ + E V FF
Sbjct: 294 EITREQFNALIAPLVKRTLLACRRALRDAGVEADEVKEVVMVGGSTRVPLVREAVGEFFG 353
Query: 2371 TTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRN 2430
T LTSIDPDK V GAAIQA+ L+GN+ D + LLLDVIPLSLG+ET+GGLVEKII RN
Sbjct: 354 RTPLTSIDPDKVVAIGAAIQADILAGNKP-DSDMLLLDVIPLSLGLETMGGLVEKIIPRN 412
Query: 2431 TTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVT 2490
TTIP + + EFTTFKD QTA+AI VVQGE ELV +C+ LA FELR IPPM AG ARI+VT
Sbjct: 413 TTIPVARAQEFTTFKDGQTAMAIHVVQGERELVADCRSLARFELRGIPPMAAGAARIRVT 472
Query: 2491 YQVDADGLLSIFAYEKISGKKKFITIKPFYNMNLDEI 2527
+QVDADGLLS+ A EK +G + I +KP Y + DEI
Sbjct: 473 FQVDADGLLSVTAMEKSTGVEASIQVKPSYGLTDDEI 509
|
Length = 616 |
| >gnl|CDD|184450 PRK14012, PRK14012, cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Score = 724 bits (1872), Expect = 0.0
Identities = 256/371 (69%), Positives = 319/371 (85%), Gaps = 3/371 (0%)
Query: 1 MDYSATTPIDPRVVDKMIPYLRV--QFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADP 58
+DYSATTP+DPRV +KM+PYL + FGNPASR+H +GW AE+A++ ARN++A LI ADP
Sbjct: 7 LDYSATTPVDPRVAEKMMPYLTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLIGADP 66
Query: 59 REIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP 118
REI++TSGATES+NLAIKGAAHFY+K+GKHIIT +TEHK+VLD+ R+LE +GF VTYL P
Sbjct: 67 REIVFTSGATESDNLAIKGAAHFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLDP 126
Query: 119 KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVG 178
++NG+I L +LE + DTILVS+M VNNEIGVIQ I IGE+CR +G+IFH DAAQ+VG
Sbjct: 127 QSNGIIDLEKLEAAMRDDTILVSIMHVNNEIGVIQDIAAIGEICRERGIIFHVDAAQSVG 186
Query: 179 KIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLAT 238
K+ I++ KVDLMSFSAHKIYGPKGIGALY+RR PR R+EAQ+HGGGHE G+RSGTL T
Sbjct: 187 KVPIDLSKLKVDLMSFSAHKIYGPKGIGALYVRRKPRVRLEAQMHGGGHERGMRSGTLPT 246
Query: 239 HQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISF 298
HQIVGMGEA R+A+ EM E +RI L+ RL+NG+ + IEE+Y+NGD+ R+P NLN+SF
Sbjct: 247 HQIVGMGEAARIAKEEMATENERIRALRDRLWNGI-KDIEEVYLNGDLEQRVPGNLNVSF 305
Query: 299 NFIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKE 358
N++EGESL+MA+KD+AVSSGSACTSASLEPSYVLRALG NDELAHSSIRF++GRFTTE+E
Sbjct: 306 NYVEGESLIMALKDLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEE 365
Query: 359 IDFTIKLLKMK 369
ID+ I+L++
Sbjct: 366 IDYAIELVRKS 376
|
Length = 404 |
| >gnl|CDD|184450 PRK14012, PRK14012, cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Score = 714 bits (1846), Expect = 0.0
Identities = 253/367 (68%), Positives = 315/367 (85%), Gaps = 3/367 (0%)
Query: 1401 ATTPIDPRVVDKMIPYLRV--QFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREII 1458
ATTP+DPRV +KM+PYL + FGNPASR+H +GW AE+A++ ARN++A LI ADPREI+
Sbjct: 11 ATTPVDPRVAEKMMPYLTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLIGADPREIV 70
Query: 1459 WTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNG 1518
+TSGATES+NLAIKGAAHFY+K+GKHIIT +TEHK+VLD+ R+LE +GF VTYL P++NG
Sbjct: 71 FTSGATESDNLAIKGAAHFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLDPQSNG 130
Query: 1519 LITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDI 1578
+I L +LE + DTILVS+M VNNEIGVIQ I IGE+CR +G+IFH DAAQ+VGK+ I
Sbjct: 131 IIDLEKLEAAMRDDTILVSIMHVNNEIGVIQDIAAIGEICRERGIIFHVDAAQSVGKVPI 190
Query: 1579 NIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIV 1638
++ KVDLMSFSAHKIYGPKGIGALY+RR PR R+EAQ+HGGGHE G+RSGTL THQIV
Sbjct: 191 DLSKLKVDLMSFSAHKIYGPKGIGALYVRRKPRVRLEAQMHGGGHERGMRSGTLPTHQIV 250
Query: 1639 GMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIE 1698
GMGEA R+A+ EM E +RI L+ RL+NG+ + IEE+Y+NGD+ R+P NLN+SFN++E
Sbjct: 251 GMGEAARIAKEEMATENERIRALRDRLWNGI-KDIEEVYLNGDLEQRVPGNLNVSFNYVE 309
Query: 1699 GESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFT 1758
GESL+MA+KD+AVSSGSACTSASLEPSYVLRALG NDELAHSSIRF++GRFTTE+EID+
Sbjct: 310 GESLIMALKDLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYA 369
Query: 1759 IKLLKMK 1765
I+L++
Sbjct: 370 IELVRKS 376
|
Length = 404 |
| >gnl|CDD|233673 TIGR01991, HscA, Fe-S protein assembly chaperone HscA | Back alignment and domain information |
|---|
Score = 677 bits (1750), Expect = 0.0
Identities = 268/497 (53%), Positives = 353/497 (71%), Gaps = 6/497 (1%)
Query: 640 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 699
+GID GTTNSLVA VR+ +PEVL D G L+PS+VRYL DG + VGK+A DPKN
Sbjct: 2 VGIDLGTTNSLVASVRSGVPEVLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDPKN 61
Query: 700 TISSIKRFIARDLKNINTNS-FPYDF-QNKFGMLHIKTISGIKSPIEISAQIFITLKKIA 757
TISS+KR + R +++I T S PY F M+ ++T+ G +P+E+SA+I LK+ A
Sbjct: 62 TISSVKRLMGRSIEDIKTFSILPYRFVDGPGEMVRLRTVQGTVTPVEVSAEILKKLKQRA 121
Query: 758 ENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFE 817
E ++ + GAVITVPAYF+D QRQ TK+AA+LAGLNVLRLLNEPT+AA+AY LDK E
Sbjct: 122 EESLGGDLVGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAVAYGLDKAS-E 180
Query: 818 GIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLK-KLS 876
GI+AVYDLGGGTFD+SILK GVF+VL+ GGDS LGGDDFD+ L WI+K + L+
Sbjct: 181 GIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHALAKWILKQLGISADLN 240
Query: 877 YKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNRTILLS 936
+D +L+ +R KE L+ SV+++ L K + +F + Q LV +T+ +
Sbjct: 241 PEDQRLLLQAARAAKEALTDAESVEVDFTLDGKDFK-GKLTRDEFEALIQPLVQKTLSIC 299
Query: 937 SKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQAN 996
+AL DA L++++I V+LVGGSTRM + V+ F LT IDPD+ V GAAIQA+
Sbjct: 300 RRALRDAGLSVEEIKGVVLVGGSTRMPLVRRAVAELFGQEPLTDIDPDQVVALGAAIQAD 359
Query: 997 FLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIA 1056
L+GNR I ++ LLLDV PLSLGIET+GGLVEKII RNT IP + + EFTT+KD QTA+
Sbjct: 360 LLAGNR-IGNDLLLLDVTPLSLGIETMGGLVEKIIPRNTPIPVARAQEFTTYKDGQTAMV 418
Query: 1057 IKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYEKISGKKK 1116
I VVQGE ELV++C+ LA FELR IPPM AG ARI+VT+QVDADGLL++ A E+ +G ++
Sbjct: 419 IHVVQGERELVEDCRSLARFELRGIPPMVAGAARIRVTFQVDADGLLTVSAQEQSTGVEQ 478
Query: 1117 FITIKPFYNMNLDEIKN 1133
I +KP Y ++ +EI+
Sbjct: 479 SIQVKPSYGLSDEEIER 495
|
The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK [Protein fate, Protein folding and stabilization]. Length = 599 |
| >gnl|CDD|233673 TIGR01991, HscA, Fe-S protein assembly chaperone HscA | Back alignment and domain information |
|---|
Score = 677 bits (1750), Expect = 0.0
Identities = 268/497 (53%), Positives = 353/497 (71%), Gaps = 6/497 (1%)
Query: 2036 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 2095
+GID GTTNSLVA VR+ +PEVL D G L+PS+VRYL DG + VGK+A DPKN
Sbjct: 2 VGIDLGTTNSLVASVRSGVPEVLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDPKN 61
Query: 2096 TISSIKRFIARDLKNINTNS-FPYDF-QNKFGMLHIKTISGIKSPIEISAQIFITLKKIA 2153
TISS+KR + R +++I T S PY F M+ ++T+ G +P+E+SA+I LK+ A
Sbjct: 62 TISSVKRLMGRSIEDIKTFSILPYRFVDGPGEMVRLRTVQGTVTPVEVSAEILKKLKQRA 121
Query: 2154 ENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFE 2213
E ++ + GAVITVPAYF+D QRQ TK+AA+LAGLNVLRLLNEPT+AA+AY LDK E
Sbjct: 122 EESLGGDLVGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAVAYGLDKAS-E 180
Query: 2214 GIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLK-KLS 2272
GI+AVYDLGGGTFD+SILK GVF+VL+ GGDS LGGDDFD+ L WI+K + L+
Sbjct: 181 GIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHALAKWILKQLGISADLN 240
Query: 2273 YKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNRTILLS 2332
+D +L+ +R KE L+ SV+++ L K + +F + Q LV +T+ +
Sbjct: 241 PEDQRLLLQAARAAKEALTDAESVEVDFTLDGKDFK-GKLTRDEFEALIQPLVQKTLSIC 299
Query: 2333 SKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQAN 2392
+AL DA L++++I V+LVGGSTRM + V+ F LT IDPD+ V GAAIQA+
Sbjct: 300 RRALRDAGLSVEEIKGVVLVGGSTRMPLVRRAVAELFGQEPLTDIDPDQVVALGAAIQAD 359
Query: 2393 FLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIA 2452
L+GNR I ++ LLLDV PLSLGIET+GGLVEKII RNT IP + + EFTT+KD QTA+
Sbjct: 360 LLAGNR-IGNDLLLLDVTPLSLGIETMGGLVEKIIPRNTPIPVARAQEFTTYKDGQTAMV 418
Query: 2453 IKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYEKISGKKK 2512
I VVQGE ELV++C+ LA FELR IPPM AG ARI+VT+QVDADGLL++ A E+ +G ++
Sbjct: 419 IHVVQGERELVEDCRSLARFELRGIPPMVAGAARIRVTFQVDADGLLTVSAQEQSTGVEQ 478
Query: 2513 FITIKPFYNMNLDEIKN 2529
I +KP Y ++ +EI+
Sbjct: 479 SIQVKPSYGLSDEEIER 495
|
The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK [Protein fate, Protein folding and stabilization]. Length = 599 |
| >gnl|CDD|131061 TIGR02006, IscS, cysteine desulfurase IscS | Back alignment and domain information |
|---|
Score = 642 bits (1658), Expect = 0.0
Identities = 259/369 (70%), Positives = 312/369 (84%), Gaps = 1/369 (0%)
Query: 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
+DY+ATTP+DPRV +KM+PYL +FGNPASR+H +GW AE+A+E ARN+VA+LI AD RE
Sbjct: 7 LDYAATTPVDPRVAEKMMPYLTEKFGNPASRSHSFGWEAEEAVENARNQVAELIGADSRE 66
Query: 61 IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN 120
I++TSGATESNNLAIKG AHFYK +G HIIT +TEHK+VLD+ R LE +GF VTYL PK+
Sbjct: 67 IVFTSGATESNNLAIKGIAHFYKSKGNHIITSKTEHKAVLDTCRYLEREGFEVTYLPPKS 126
Query: 121 NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKI 180
NGLI L +L+ I DTILVS+M VNNEIGVIQ I IGE+CR + V FH DAAQ+VGKI
Sbjct: 127 NGLIDLEELKAAIRDDTILVSIMHVNNEIGVIQDIAAIGEICRERKVFFHVDAAQSVGKI 186
Query: 181 DINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQ 240
IN+ KVDLMS S HKIYGPKGIGALY+RR PR R+EA IHGGGHE G+RSGTL THQ
Sbjct: 187 PINVNELKVDLMSISGHKIYGPKGIGALYVRRKPRVRLEALIHGGGHERGMRSGTLPTHQ 246
Query: 241 IVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF 300
IVGMGEAFR+A+ EM ++ +L L+ RL NG+ +SIEE+Y+NGD+ +R+P NLN+SFN+
Sbjct: 247 IVGMGEAFRIAKEEMAQDTAHVLALRDRLLNGI-KSIEEVYLNGDLEHRVPGNLNVSFNY 305
Query: 301 IEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEID 360
+EGESL+MA+KD+AVSSGSACTSASLEPSYVLRALG NDELAHSSIRFTIGRFTTE+EID
Sbjct: 306 VEGESLIMALKDLAVSSGSACTSASLEPSYVLRALGINDELAHSSIRFTIGRFTTEEEID 365
Query: 361 FTIKLLKMK 369
+ +KL+K
Sbjct: 366 YAVKLVKSA 374
|
This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors [Biosynthesis of cofactors, prosthetic groups, and carriers, Other, Protein synthesis, tRNA and rRNA base modification]. Length = 402 |
| >gnl|CDD|131061 TIGR02006, IscS, cysteine desulfurase IscS | Back alignment and domain information |
|---|
Score = 634 bits (1636), Expect = 0.0
Identities = 257/365 (70%), Positives = 308/365 (84%), Gaps = 1/365 (0%)
Query: 1401 ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWT 1460
ATTP+DPRV +KM+PYL +FGNPASR+H +GW AE+A+E ARN+VA+LI AD REI++T
Sbjct: 11 ATTPVDPRVAEKMMPYLTEKFGNPASRSHSFGWEAEEAVENARNQVAELIGADSREIVFT 70
Query: 1461 SGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLI 1520
SGATESNNLAIKG AHFYK +G HIIT +TEHK+VLD+ R LE +GF VTYL PK+NGLI
Sbjct: 71 SGATESNNLAIKGIAHFYKSKGNHIITSKTEHKAVLDTCRYLEREGFEVTYLPPKSNGLI 130
Query: 1521 TLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINI 1580
L +L+ I DTILVS+M VNNEIGVIQ I IGE+CR + V FH DAAQ+VGKI IN+
Sbjct: 131 DLEELKAAIRDDTILVSIMHVNNEIGVIQDIAAIGEICRERKVFFHVDAAQSVGKIPINV 190
Query: 1581 QNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGM 1640
KVDLMS S HKIYGPKGIGALY+RR PR R+EA IHGGGHE G+RSGTL THQIVGM
Sbjct: 191 NELKVDLMSISGHKIYGPKGIGALYVRRKPRVRLEALIHGGGHERGMRSGTLPTHQIVGM 250
Query: 1641 GEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGE 1700
GEAFR+A+ EM ++ +L L+ RL NG+ +SIEE+Y+NGD+ +R+P NLN+SFN++EGE
Sbjct: 251 GEAFRIAKEEMAQDTAHVLALRDRLLNGI-KSIEEVYLNGDLEHRVPGNLNVSFNYVEGE 309
Query: 1701 SLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIK 1760
SL+MA+KD+AVSSGSACTSASLEPSYVLRALG NDELAHSSIRFTIGRFTTE+EID+ +K
Sbjct: 310 SLIMALKDLAVSSGSACTSASLEPSYVLRALGINDELAHSSIRFTIGRFTTEEEIDYAVK 369
Query: 1761 LLKMK 1765
L+K
Sbjct: 370 LVKSA 374
|
This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors [Biosynthesis of cofactors, prosthetic groups, and carriers, Other, Protein synthesis, tRNA and rRNA base modification]. Length = 402 |
| >gnl|CDD|224029 COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 582 bits (1503), Expect = 0.0
Identities = 215/371 (57%), Positives = 276/371 (74%), Gaps = 7/371 (1%)
Query: 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
+D +ATTP+DP V++ M+PYL FGNP+S H +G A KA+E+AR ++A+L+ ADP E
Sbjct: 5 LDNAATTPVDPEVLEAMLPYLTEVFGNPSSL-HSFGREARKAVEEAREQIAKLLGADPEE 63
Query: 61 IIWTSGATESNNLAIKGAAHFY--KKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP 118
II+TSGATESNNLAIKGAA Y ++GKHIIT EH +VL++ R LE GF VTYL
Sbjct: 64 IIFTSGATESNNLAIKGAALAYRNAQKGKHIITSAIEHPAVLNTCRYLERQGFEVTYLPV 123
Query: 119 KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVG 178
+NGL+ L QLEE + DTILVS+M NNE G IQPI EIGE+C+ +G++FH DA QAVG
Sbjct: 124 DSNGLVDLEQLEEALRPDTILVSIMHANNETGTIQPIAEIGEICKERGILFHVDAVQAVG 183
Query: 179 KIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLAT 238
KI I+++ VDL+SFSAHK GPKGIGALY+R P R+E IHGGG E GLRSGT
Sbjct: 184 KIPIDLEELGVDLLSFSAHKFGGPKGIGALYVR--PGVRLEPLIHGGGQERGLRSGTENV 241
Query: 239 HQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISF 298
IVG G+A +A E++EE R+ L+ RL +GL+E I ++Y+NGD R+P+ LN SF
Sbjct: 242 PGIVGFGKAAEIAVEELEEENARLRKLRDRLEDGLLEIIPDVYLNGDDEPRLPNILNFSF 301
Query: 299 NFIEGESLLMA--IKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTE 356
+EGESLL+A + IAVS+GSAC+S SLEPS+VLRA+G ++ELAH SIRF++GRFTTE
Sbjct: 302 PGVEGESLLLALDLAGIAVSTGSACSSGSLEPSHVLRAMGISEELAHGSIRFSLGRFTTE 361
Query: 357 KEIDFTIKLLK 367
+EID + LK
Sbjct: 362 EEIDAAAEALK 372
|
Length = 386 |
| >gnl|CDD|224029 COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 574 bits (1483), Expect = 0.0
Identities = 214/367 (58%), Positives = 273/367 (74%), Gaps = 7/367 (1%)
Query: 1401 ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWT 1460
ATTP+DP V++ M+PYL FGNP+S H +G A KA+E+AR ++A+L+ ADP EII+T
Sbjct: 9 ATTPVDPEVLEAMLPYLTEVFGNPSSL-HSFGREARKAVEEAREQIAKLLGADPEEIIFT 67
Query: 1461 SGATESNNLAIKGAAHFY--KKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNG 1518
SGATESNNLAIKGAA Y ++GKHIIT EH +VL++ R LE GF VTYL +NG
Sbjct: 68 SGATESNNLAIKGAALAYRNAQKGKHIITSAIEHPAVLNTCRYLERQGFEVTYLPVDSNG 127
Query: 1519 LITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDI 1578
L+ L QLEE + DTILVS+M NNE G IQPI EIGE+C+ +G++FH DA QAVGKI I
Sbjct: 128 LVDLEQLEEALRPDTILVSIMHANNETGTIQPIAEIGEICKERGILFHVDAVQAVGKIPI 187
Query: 1579 NIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIV 1638
+++ VDL+SFSAHK GPKGIGALY+R P R+E IHGGG E GLRSGT IV
Sbjct: 188 DLEELGVDLLSFSAHKFGGPKGIGALYVR--PGVRLEPLIHGGGQERGLRSGTENVPGIV 245
Query: 1639 GMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIE 1698
G G+A +A E++EE R+ L+ RL +GL+E I ++Y+NGD R+P+ LN SF +E
Sbjct: 246 GFGKAAEIAVEELEEENARLRKLRDRLEDGLLEIIPDVYLNGDDEPRLPNILNFSFPGVE 305
Query: 1699 GESLLMA--IKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEID 1756
GESLL+A + IAVS+GSAC+S SLEPS+VLRA+G ++ELAH SIRF++GRFTTE+EID
Sbjct: 306 GESLLLALDLAGIAVSTGSACSSGSLEPSHVLRAMGISEELAHGSIRFSLGRFTTEEEID 365
Query: 1757 FTIKLLK 1763
+ LK
Sbjct: 366 AAAEALK 372
|
Length = 386 |
| >gnl|CDD|178257 PLN02651, PLN02651, cysteine desulfurase | Back alignment and domain information |
|---|
Score = 566 bits (1462), Expect = 0.0
Identities = 224/362 (61%), Positives = 273/362 (75%), Gaps = 2/362 (0%)
Query: 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
+D ATTPIDPRV+D M+P+L FGNP SR H+YGW +E A+EKAR +VA LI ADP+E
Sbjct: 3 LDMQATTPIDPRVLDAMLPFLIEHFGNPHSRTHLYGWESEDAVEKARAQVAALIGADPKE 62
Query: 61 IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN 120
II+TSGATESNNLAIKG HFYK + KH+IT QTEHK VLDS R L+ +GF VTYL K+
Sbjct: 63 IIFTSGATESNNLAIKGVMHFYKDKKKHVITTQTEHKCVLDSCRHLQQEGFEVTYLPVKS 122
Query: 121 NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKI 180
+GL+ L +L I DT LVSVM VNNEIGVIQP+ EIGELCR K V+FH DAAQAVGKI
Sbjct: 123 DGLVDLDELAAAIRPDTALVSVMAVNNEIGVIQPVEEIGELCREKKVLFHTDAAQAVGKI 182
Query: 181 DINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQ 240
+++ + VDLMS S HKIYGPKG+GALY+RR PR R+E + GGG E G RSGT T
Sbjct: 183 PVDVDDLGVDLMSISGHKIYGPKGVGALYVRRRPRVRLEPLMSGGGQERGRRSGTENTPL 242
Query: 241 IVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYING--DMNNRIPHNLNISF 298
+VG+G A LA EM + K + L++RL NGL + + +NG D R P LN+SF
Sbjct: 243 VVGLGAACELAMKEMDYDEKHMKALRERLLNGLRAKLGGVRVNGPRDPEKRYPGTLNLSF 302
Query: 299 NFIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKE 358
++EGESLLM +K++AVSSGSACTSASLEPSYVLRALG +E+AH S+R +GRFTTE+E
Sbjct: 303 AYVEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVPEEMAHGSLRLGVGRFTTEEE 362
Query: 359 ID 360
+D
Sbjct: 363 VD 364
|
Length = 364 |
| >gnl|CDD|178257 PLN02651, PLN02651, cysteine desulfurase | Back alignment and domain information |
|---|
Score = 560 bits (1444), Expect = 0.0
Identities = 223/358 (62%), Positives = 271/358 (75%), Gaps = 2/358 (0%)
Query: 1401 ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWT 1460
ATTPIDPRV+D M+P+L FGNP SR H+YGW +E A+EKAR +VA LI ADP+EII+T
Sbjct: 7 ATTPIDPRVLDAMLPFLIEHFGNPHSRTHLYGWESEDAVEKARAQVAALIGADPKEIIFT 66
Query: 1461 SGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLI 1520
SGATESNNLAIKG HFYK + KH+IT QTEHK VLDS R L+ +GF VTYL K++GL+
Sbjct: 67 SGATESNNLAIKGVMHFYKDKKKHVITTQTEHKCVLDSCRHLQQEGFEVTYLPVKSDGLV 126
Query: 1521 TLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINI 1580
L +L I DT LVSVM VNNEIGVIQP+ EIGELCR K V+FH DAAQAVGKI +++
Sbjct: 127 DLDELAAAIRPDTALVSVMAVNNEIGVIQPVEEIGELCREKKVLFHTDAAQAVGKIPVDV 186
Query: 1581 QNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGM 1640
+ VDLMS S HKIYGPKG+GALY+RR PR R+E + GGG E G RSGT T +VG+
Sbjct: 187 DDLGVDLMSISGHKIYGPKGVGALYVRRRPRVRLEPLMSGGGQERGRRSGTENTPLVVGL 246
Query: 1641 GEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYING--DMNNRIPHNLNISFNFIE 1698
G A LA EM + K + L++RL NGL + + +NG D R P LN+SF ++E
Sbjct: 247 GAACELAMKEMDYDEKHMKALRERLLNGLRAKLGGVRVNGPRDPEKRYPGTLNLSFAYVE 306
Query: 1699 GESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEID 1756
GESLLM +K++AVSSGSACTSASLEPSYVLRALG +E+AH S+R +GRFTTE+E+D
Sbjct: 307 GESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVPEEMAHGSLRLGVGRFTTEEEVD 364
|
Length = 364 |
| >gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein | Back alignment and domain information |
|---|
Score = 488 bits (1259), Expect = e-153
Identities = 220/508 (43%), Positives = 308/508 (60%), Gaps = 19/508 (3%)
Query: 640 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 699
IGID GTTNS VA++ PEV+ + G PS+V + P + VG+ AK +PKN
Sbjct: 2 IGIDLGTTNSCVAVMEGGGPEVIANDEGNRTTPSVVAFTPKER-LVGQAAKRQAVTNPKN 60
Query: 700 TISSIKRFIARDLKNINTNS----FPYDFQ---NKFGMLHIKTISGIKSPIEISAQIFIT 752
T+ S+KR I R + PY N + ++ + +P +ISA +
Sbjct: 61 TVFSVKRLIGRKFSDPVVQRDIKHVPYKVVKLPNGDAGVEVRYLGETFTPEQISAMVLQK 120
Query: 753 LKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLD 812
LK+ AE + + AVITVPAYFND QRQ TK+A ++AGLNVLR++NEPT+AA+AY LD
Sbjct: 121 LKETAEAYLGEPVTDAVITVPAYFNDAQRQATKDAGRIAGLNVLRIINEPTAAALAYGLD 180
Query: 813 KNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFL 872
K E V+DLGGGTFD+SIL+ +GVF+VL+ GD++LGG+DFD L V+ F
Sbjct: 181 KKDKERNVLVFDLGGGTFDVSILEIGDGVFEVLATNGDTHLGGEDFDNRLVDHFVEE-FK 239
Query: 873 KK----LSYKDVNILMIKSREIK---ELLSYQSSVKLNVK--LSDKKIVNITIDMKQFFT 923
KK LS + ++ K EL S Q+ + L ++D K V+ T+ +F
Sbjct: 240 KKYGIDLSKDPRALQRLREAAEKAKIELSSNQTEINLPFITAMADGKDVSGTLTRAKFEE 299
Query: 924 ITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDP 983
+ L RT+ KAL DA L+ +I+ V+LVGGSTR+ + E V FF ++P
Sbjct: 300 LCADLFERTLEPVEKALKDAKLSKSEIDEVVLVGGSTRIPAVQELVKEFFGKEPSKGVNP 359
Query: 984 DKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSG 1043
D+AV GAA+QA LSG + D LLLDV PLSLGIET+GG++ K+I RNTTIP S
Sbjct: 360 DEAVAIGAAVQAGVLSGTFDVKD-VLLLDVTPLSLGIETLGGVMTKLIPRNTTIPTKKSQ 418
Query: 1044 EFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADGLL 1103
F+T DNQTA+ I+V QGE E+ + ++L +FEL IPP P G +I+VT+ +DA+G+L
Sbjct: 419 IFSTAADNQTAVEIQVYQGEREMAPDNKLLGSFELDGIPPAPRGVPQIEVTFDIDANGIL 478
Query: 1104 SIFAYEKISGKKKFITIKPFYNMNLDEI 1131
++ A +K +GK++ ITI ++ DEI
Sbjct: 479 TVSAKDKGTGKEQKITITASSGLSDDEI 506
|
Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region. Length = 598 |
| >gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein | Back alignment and domain information |
|---|
Score = 488 bits (1259), Expect = e-153
Identities = 220/508 (43%), Positives = 308/508 (60%), Gaps = 19/508 (3%)
Query: 2036 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 2095
IGID GTTNS VA++ PEV+ + G PS+V + P + VG+ AK +PKN
Sbjct: 2 IGIDLGTTNSCVAVMEGGGPEVIANDEGNRTTPSVVAFTPKER-LVGQAAKRQAVTNPKN 60
Query: 2096 TISSIKRFIARDLKNINTNS----FPYDFQ---NKFGMLHIKTISGIKSPIEISAQIFIT 2148
T+ S+KR I R + PY N + ++ + +P +ISA +
Sbjct: 61 TVFSVKRLIGRKFSDPVVQRDIKHVPYKVVKLPNGDAGVEVRYLGETFTPEQISAMVLQK 120
Query: 2149 LKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLD 2208
LK+ AE + + AVITVPAYFND QRQ TK+A ++AGLNVLR++NEPT+AA+AY LD
Sbjct: 121 LKETAEAYLGEPVTDAVITVPAYFNDAQRQATKDAGRIAGLNVLRIINEPTAAALAYGLD 180
Query: 2209 KNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFL 2268
K E V+DLGGGTFD+SIL+ +GVF+VL+ GD++LGG+DFD L V+ F
Sbjct: 181 KKDKERNVLVFDLGGGTFDVSILEIGDGVFEVLATNGDTHLGGEDFDNRLVDHFVEE-FK 239
Query: 2269 KK----LSYKDVNILMIKSREIK---ELLSYQSSVKLNVK--LSDKKIVNITIDMKQFFT 2319
KK LS + ++ K EL S Q+ + L ++D K V+ T+ +F
Sbjct: 240 KKYGIDLSKDPRALQRLREAAEKAKIELSSNQTEINLPFITAMADGKDVSGTLTRAKFEE 299
Query: 2320 ITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDP 2379
+ L RT+ KAL DA L+ +I+ V+LVGGSTR+ + E V FF ++P
Sbjct: 300 LCADLFERTLEPVEKALKDAKLSKSEIDEVVLVGGSTRIPAVQELVKEFFGKEPSKGVNP 359
Query: 2380 DKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSG 2439
D+AV GAA+QA LSG + D LLLDV PLSLGIET+GG++ K+I RNTTIP S
Sbjct: 360 DEAVAIGAAVQAGVLSGTFDVKD-VLLLDVTPLSLGIETLGGVMTKLIPRNTTIPTKKSQ 418
Query: 2440 EFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADGLL 2499
F+T DNQTA+ I+V QGE E+ + ++L +FEL IPP P G +I+VT+ +DA+G+L
Sbjct: 419 IFSTAADNQTAVEIQVYQGEREMAPDNKLLGSFELDGIPPAPRGVPQIEVTFDIDANGIL 478
Query: 2500 SIFAYEKISGKKKFITIKPFYNMNLDEI 2527
++ A +K +GK++ ITI ++ DEI
Sbjct: 479 TVSAKDKGTGKEQKITITASSGLSDDEI 506
|
Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region. Length = 598 |
| >gnl|CDD|132443 TIGR03402, FeS_nifS, cysteine desulfurase NifS | Back alignment and domain information |
|---|
Score = 472 bits (1218), Expect = e-150
Identities = 175/368 (47%), Positives = 245/368 (66%), Gaps = 6/368 (1%)
Query: 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
+D +ATT +DP V++ M+PY FGNP+S H +G KA+E+AR +VA+L+ A+P E
Sbjct: 3 LDNNATTRVDPEVLEAMLPYFTEYFGNPSSM-HSFGGEVGKAVEEAREQVAKLLGAEPDE 61
Query: 61 IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN 120
II+TSG TES+N AIK A ++ +HIIT EH +VL + LE G++VTYL
Sbjct: 62 IIFTSGGTESDNTAIKSALAAQPEK-RHIITTAVEHPAVLSLCQHLEKQGYKVTYLPVDE 120
Query: 121 NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKI 180
G + L +L I DT LVSVM NNE G I PI EIGE+ + +G +FH DA QAVGKI
Sbjct: 121 EGRLDLEELRAAITDDTALVSVMWANNETGTIFPIEEIGEIAKERGALFHTDAVQAVGKI 180
Query: 181 DINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQ 240
I+++ +D++S S HK++GPKG+GALYIR+ TR + GG E G R+GT
Sbjct: 181 PIDLKEMNIDMLSLSGHKLHGPKGVGALYIRKG--TRFRPLLRGGHQERGRRAGTENVPG 238
Query: 241 IVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF 300
IVG+G+A LA ++EE R+ L+ RL GL+ I + +NGD R+P+ +NISF +
Sbjct: 239 IVGLGKAAELATEHLEEENTRVRALRDRLEAGLLARIPDARLNGDPTKRLPNTVNISFEY 298
Query: 301 IEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKE 358
IEGE++L+ + + I SSGSACTS SLEPS+VLRA+G AH SIRF++ R+ TE++
Sbjct: 299 IEGEAILLLLDMEGICASSGSACTSGSLEPSHVLRAMGVPHTAAHGSIRFSLSRYNTEED 358
Query: 359 IDFTIKLL 366
ID+ +++L
Sbjct: 359 IDYVLEVL 366
|
Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403. Length = 379 |
| >gnl|CDD|223520 COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 476 bits (1228), Expect = e-149
Identities = 223/500 (44%), Positives = 303/500 (60%), Gaps = 25/500 (5%)
Query: 640 IGIDFGTTNSLVAIVRNN-IPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPK 698
IGID GTTNS+VA++R +P+V+++ G L PS+V + +G++ VG+ AK +P+
Sbjct: 8 IGIDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNPE 67
Query: 699 NTISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAE 758
NTI SIKR I R N + K +P EISA I LK+ AE
Sbjct: 68 NTIFSIKRKIGR---GSNGLKISVEVDGK-----------KYTPEEISAMILTKLKEDAE 113
Query: 759 NAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFEG 818
+ ++ AVITVPAYFND QRQ TK+AA++AGLNVLRL+NEPT+AA+AY LDK E
Sbjct: 114 AYLGEKVTDAVITVPAYFNDAQRQATKDAARIAGLNVLRLINEPTAAALAYGLDKGK-EK 172
Query: 819 IFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLS-- 876
VYDLGGGTFD+S+L+ +GVF+VL+ GGD++LGGDDFD L ++V K
Sbjct: 173 TVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDNALIDYLVMEFKGKGGIDL 232
Query: 877 ---YKDVNILMIKSREIKELLSYQSSVKLNVK-LSDKKIVNITIDMKQFFTITQHLVNRT 932
+ L + + K LS + +N+ + + + +F + L+ RT
Sbjct: 233 RSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGDIDLLKELTRAKFEELILDLLERT 292
Query: 933 ILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAA 992
I +AL DA L DI+ VILVGGSTR+ + E V FF SI+PD+AV GAA
Sbjct: 293 IEPVEQALKDAGLEKSDIDLVILVGGSTRIPAVQELVKEFFGKEPEKSINPDEAVALGAA 352
Query: 993 IQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQ 1052
IQA LSG + LLLDVIPLSLGIET+GG+ II RNTTIP S EF+T D Q
Sbjct: 353 IQAAVLSGE---VPDVLLLDVIPLSLGIETLGGVRTPIIERNTTIPVKKSQEFSTAADGQ 409
Query: 1053 TAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYEKIS 1112
TA+AI V QGE E+ + + L FEL IPP P G +I+VT+ +DA+G+L++ A + +
Sbjct: 410 TAVAIHVFQGEREMAADNKSLGRFELDGIPPAPRGVPQIEVTFDIDANGILNVTAKDLGT 469
Query: 1113 GKKKFITIKPFYNMNLDEIK 1132
GK++ ITIK ++ +EI+
Sbjct: 470 GKEQSITIKASSGLSDEEIE 489
|
Length = 579 |
| >gnl|CDD|223520 COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 476 bits (1228), Expect = e-149
Identities = 223/500 (44%), Positives = 303/500 (60%), Gaps = 25/500 (5%)
Query: 2036 IGIDFGTTNSLVAIVRNN-IPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPK 2094
IGID GTTNS+VA++R +P+V+++ G L PS+V + +G++ VG+ AK +P+
Sbjct: 8 IGIDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNPE 67
Query: 2095 NTISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAE 2154
NTI SIKR I R N + K +P EISA I LK+ AE
Sbjct: 68 NTIFSIKRKIGR---GSNGLKISVEVDGK-----------KYTPEEISAMILTKLKEDAE 113
Query: 2155 NAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFEG 2214
+ ++ AVITVPAYFND QRQ TK+AA++AGLNVLRL+NEPT+AA+AY LDK E
Sbjct: 114 AYLGEKVTDAVITVPAYFNDAQRQATKDAARIAGLNVLRLINEPTAAALAYGLDKGK-EK 172
Query: 2215 IFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLS-- 2272
VYDLGGGTFD+S+L+ +GVF+VL+ GGD++LGGDDFD L ++V K
Sbjct: 173 TVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDNALIDYLVMEFKGKGGIDL 232
Query: 2273 ---YKDVNILMIKSREIKELLSYQSSVKLNVK-LSDKKIVNITIDMKQFFTITQHLVNRT 2328
+ L + + K LS + +N+ + + + +F + L+ RT
Sbjct: 233 RSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGDIDLLKELTRAKFEELILDLLERT 292
Query: 2329 ILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAA 2388
I +AL DA L DI+ VILVGGSTR+ + E V FF SI+PD+AV GAA
Sbjct: 293 IEPVEQALKDAGLEKSDIDLVILVGGSTRIPAVQELVKEFFGKEPEKSINPDEAVALGAA 352
Query: 2389 IQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQ 2448
IQA LSG + LLLDVIPLSLGIET+GG+ II RNTTIP S EF+T D Q
Sbjct: 353 IQAAVLSGE---VPDVLLLDVIPLSLGIETLGGVRTPIIERNTTIPVKKSQEFSTAADGQ 409
Query: 2449 TAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYEKIS 2508
TA+AI V QGE E+ + + L FEL IPP P G +I+VT+ +DA+G+L++ A + +
Sbjct: 410 TAVAIHVFQGEREMAADNKSLGRFELDGIPPAPRGVPQIEVTFDIDANGILNVTAKDLGT 469
Query: 2509 GKKKFITIKPFYNMNLDEIK 2528
GK++ ITIK ++ +EI+
Sbjct: 470 GKEQSITIKASSGLSDEEIE 489
|
Length = 579 |
| >gnl|CDD|132443 TIGR03402, FeS_nifS, cysteine desulfurase NifS | Back alignment and domain information |
|---|
Score = 465 bits (1198), Expect = e-148
Identities = 174/364 (47%), Positives = 242/364 (66%), Gaps = 6/364 (1%)
Query: 1401 ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWT 1460
ATT +DP V++ M+PY FGNP+S H +G KA+E+AR +VA+L+ A+P EII+T
Sbjct: 7 ATTRVDPEVLEAMLPYFTEYFGNPSSM-HSFGGEVGKAVEEAREQVAKLLGAEPDEIIFT 65
Query: 1461 SGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLI 1520
SG TES+N AIK A ++ +HIIT EH +VL + LE G++VTYL G +
Sbjct: 66 SGGTESDNTAIKSALAAQPEK-RHIITTAVEHPAVLSLCQHLEKQGYKVTYLPVDEEGRL 124
Query: 1521 TLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINI 1580
L +L I DT LVSVM NNE G I PI EIGE+ + +G +FH DA QAVGKI I++
Sbjct: 125 DLEELRAAITDDTALVSVMWANNETGTIFPIEEIGEIAKERGALFHTDAVQAVGKIPIDL 184
Query: 1581 QNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGM 1640
+ +D++S S HK++GPKG+GALYIR+ TR + GG E G R+GT IVG+
Sbjct: 185 KEMNIDMLSLSGHKLHGPKGVGALYIRKG--TRFRPLLRGGHQERGRRAGTENVPGIVGL 242
Query: 1641 GEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGE 1700
G+A LA ++EE R+ L+ RL GL+ I + +NGD R+P+ +NISF +IEGE
Sbjct: 243 GKAAELATEHLEEENTRVRALRDRLEAGLLARIPDARLNGDPTKRLPNTVNISFEYIEGE 302
Query: 1701 SLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFT 1758
++L+ + + I SSGSACTS SLEPS+VLRA+G AH SIRF++ R+ TE++ID+
Sbjct: 303 AILLLLDMEGICASSGSACTSGSLEPSHVLRAMGVPHTAAHGSIRFSLSRYNTEEDIDYV 362
Query: 1759 IKLL 1762
+++L
Sbjct: 363 LEVL 366
|
Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403. Length = 379 |
| >gnl|CDD|212678 cd10236, HscA_like_NBD, Nucleotide-binding domain of HscA and similar proteins | Back alignment and domain information |
|---|
Score = 444 bits (1145), Expect = e-141
Identities = 180/362 (49%), Positives = 237/362 (65%), Gaps = 10/362 (2%)
Query: 638 VSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDP 697
++IGID GTTNSLVA V + ++L D+ G L+PS+V Y DG I VG A DP
Sbjct: 1 LAIGIDLGTTNSLVASVLSGKVKILPDENGRVLLPSVVHY-GDGGISVGHDALKLAISDP 59
Query: 698 KNTISSIKRFIARDLKNINTNSF--PYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKK 755
KNTISS+KR + + +++I + P G++ T G +P+E+SA+I LK+
Sbjct: 60 KNTISSVKRLMGKSIEDIKKSFPYLPILEGKNGGIILFHTQQGTVTPVEVSAEILKALKE 119
Query: 756 IAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNI 815
AE ++ I GAVITVPAYF+D QRQ TK+AA+LAGLNVLRLLNEPT+AA+AY LDK
Sbjct: 120 RAEKSLGGEIKGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAALAYGLDKKK 179
Query: 816 FEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKL 875
EGI+AVYDLGGGTFD+SILK GVF+VL+ GGDS LGGDDFD L ++K LK L
Sbjct: 180 -EGIYAVYDLGGGTFDVSILKLHKGVFEVLATGGDSALGGDDFDQLLAELLLKKYGLKSL 238
Query: 876 -SYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNRTIL 934
S +D L++ +R+ KE LS V++ + D K TI ++F + LV +T+
Sbjct: 239 ISDEDQAELLLIARKAKEALSGAEEVEVRGQ--DFK---CTITREEFEKLIDPLVKKTLN 293
Query: 935 LSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQ 994
+ +AL DA L++KDI VILVGGSTR+ + E VS FF L I+PD+ V GAA+Q
Sbjct: 294 ICKQALRDAGLSVKDIKGVILVGGSTRIPLVQEAVSKFFGQKPLCDINPDEVVAIGAALQ 353
Query: 995 AN 996
AN
Sbjct: 354 AN 355
|
Escherichia coli HscA (heat shock cognate protein A, also called Hsc66), belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). HscA's partner J-domain protein is HscB; it does not appear to require a NEF, and has been shown to be induced by cold-shock. The HscA-HscB chaperone/co-chaperone pair is involved in [Fe-S] cluster assembly. Length = 355 |
| >gnl|CDD|212678 cd10236, HscA_like_NBD, Nucleotide-binding domain of HscA and similar proteins | Back alignment and domain information |
|---|
Score = 444 bits (1145), Expect = e-141
Identities = 180/362 (49%), Positives = 237/362 (65%), Gaps = 10/362 (2%)
Query: 2034 VSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDP 2093
++IGID GTTNSLVA V + ++L D+ G L+PS+V Y DG I VG A DP
Sbjct: 1 LAIGIDLGTTNSLVASVLSGKVKILPDENGRVLLPSVVHY-GDGGISVGHDALKLAISDP 59
Query: 2094 KNTISSIKRFIARDLKNINTNSF--PYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKK 2151
KNTISS+KR + + +++I + P G++ T G +P+E+SA+I LK+
Sbjct: 60 KNTISSVKRLMGKSIEDIKKSFPYLPILEGKNGGIILFHTQQGTVTPVEVSAEILKALKE 119
Query: 2152 IAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNI 2211
AE ++ I GAVITVPAYF+D QRQ TK+AA+LAGLNVLRLLNEPT+AA+AY LDK
Sbjct: 120 RAEKSLGGEIKGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAALAYGLDKKK 179
Query: 2212 FEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKL 2271
EGI+AVYDLGGGTFD+SILK GVF+VL+ GGDS LGGDDFD L ++K LK L
Sbjct: 180 -EGIYAVYDLGGGTFDVSILKLHKGVFEVLATGGDSALGGDDFDQLLAELLLKKYGLKSL 238
Query: 2272 -SYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNRTIL 2330
S +D L++ +R+ KE LS V++ + D K TI ++F + LV +T+
Sbjct: 239 ISDEDQAELLLIARKAKEALSGAEEVEVRGQ--DFK---CTITREEFEKLIDPLVKKTLN 293
Query: 2331 LSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQ 2390
+ +AL DA L++KDI VILVGGSTR+ + E VS FF L I+PD+ V GAA+Q
Sbjct: 294 ICKQALRDAGLSVKDIKGVILVGGSTRIPLVQEAVSKFFGQKPLCDINPDEVVAIGAALQ 353
Query: 2391 AN 2392
AN
Sbjct: 354 AN 355
|
Escherichia coli HscA (heat shock cognate protein A, also called Hsc66), belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). HscA's partner J-domain protein is HscB; it does not appear to require a NEF, and has been shown to be induced by cold-shock. The HscA-HscB chaperone/co-chaperone pair is involved in [Fe-S] cluster assembly. Length = 355 |
| >gnl|CDD|233830 TIGR02350, prok_dnaK, chaperone protein DnaK | Back alignment and domain information |
|---|
Score = 447 bits (1152), Expect = e-139
Identities = 222/508 (43%), Positives = 306/508 (60%), Gaps = 21/508 (4%)
Query: 640 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 699
IGID GTTNS VA++ P V+ + G PS+V + +G+ VG+ AK +P+N
Sbjct: 3 IGIDLGTTNSCVAVMEGGEPVVIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNPEN 62
Query: 700 TISSIKRFIARDLKNI--NTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIA 757
TI SIKRF+ R + PY G + +K +P EISA I LKK A
Sbjct: 63 TIYSIKRFMGRRFDEVTEEAKRVPYKVVGDGGDVRVKVDGKEYTPQEISAMILQKLKKDA 122
Query: 758 ENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFE 817
E + ++ AVITVPAYFND QRQ TK+A K+AGL VLR++NEPT+AA+AY LDK+ +
Sbjct: 123 EAYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKSKKD 182
Query: 818 GIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKK--- 874
V+DLGGGTFD+SIL+ +GVF+VLS GD++LGGDDFD + W+ F K+
Sbjct: 183 EKILVFDLGGGTFDVSILEIGDGVFEVLSTAGDTHLGGDDFDQRIIDWLADE-FKKEEGI 241
Query: 875 -LSYKDVNILMIKSREIKEL----LSYQSSVKLN-----VKLSDKKIVNITIDMKQFFTI 924
LS KD + + + +E E LS S ++N S K + +T+ +F +
Sbjct: 242 DLS-KD-KMALQRLKEAAEKAKIELSSVLSTEINLPFITADASGPKHLEMTLTRAKFEEL 299
Query: 925 TQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPD 984
T LV RT +AL DA L+ DI+ VILVGGSTR+ + E V +FF S++PD
Sbjct: 300 TADLVERTKEPVRQALKDAGLSASDIDEVILVGGSTRIPAVQELVKDFFGKEPNKSVNPD 359
Query: 985 KAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGE 1044
+ V GAAIQ L G+ + LLLDV PLSLGIET+GG++ K+I RNTTIP S
Sbjct: 360 EVVAIGAAIQGGVLKGDVK---DVLLLDVTPLSLGIETLGGVMTKLIERNTTIPTKKSQV 416
Query: 1045 FTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADGLLS 1104
F+T DNQ A+ I V+QGE + + + L FEL IPP P G +I+VT+ +DA+G+L
Sbjct: 417 FSTAADNQPAVDIHVLQGERPMAADNKSLGRFELTGIPPAPRGVPQIEVTFDIDANGILH 476
Query: 1105 IFAYEKISGKKKFITIKPFYNMNLDEIK 1132
+ A +K +GK++ ITI ++ +EI+
Sbjct: 477 VSAKDKGTGKEQSITITASSGLSEEEIE 504
|
Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved [Protein fate, Protein folding and stabilization]. Length = 595 |
| >gnl|CDD|233830 TIGR02350, prok_dnaK, chaperone protein DnaK | Back alignment and domain information |
|---|
Score = 447 bits (1152), Expect = e-139
Identities = 222/508 (43%), Positives = 306/508 (60%), Gaps = 21/508 (4%)
Query: 2036 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 2095
IGID GTTNS VA++ P V+ + G PS+V + +G+ VG+ AK +P+N
Sbjct: 3 IGIDLGTTNSCVAVMEGGEPVVIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNPEN 62
Query: 2096 TISSIKRFIARDLKNI--NTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIA 2153
TI SIKRF+ R + PY G + +K +P EISA I LKK A
Sbjct: 63 TIYSIKRFMGRRFDEVTEEAKRVPYKVVGDGGDVRVKVDGKEYTPQEISAMILQKLKKDA 122
Query: 2154 ENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFE 2213
E + ++ AVITVPAYFND QRQ TK+A K+AGL VLR++NEPT+AA+AY LDK+ +
Sbjct: 123 EAYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKSKKD 182
Query: 2214 GIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKK--- 2270
V+DLGGGTFD+SIL+ +GVF+VLS GD++LGGDDFD + W+ F K+
Sbjct: 183 EKILVFDLGGGTFDVSILEIGDGVFEVLSTAGDTHLGGDDFDQRIIDWLADE-FKKEEGI 241
Query: 2271 -LSYKDVNILMIKSREIKEL----LSYQSSVKLN-----VKLSDKKIVNITIDMKQFFTI 2320
LS KD + + + +E E LS S ++N S K + +T+ +F +
Sbjct: 242 DLS-KD-KMALQRLKEAAEKAKIELSSVLSTEINLPFITADASGPKHLEMTLTRAKFEEL 299
Query: 2321 TQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPD 2380
T LV RT +AL DA L+ DI+ VILVGGSTR+ + E V +FF S++PD
Sbjct: 300 TADLVERTKEPVRQALKDAGLSASDIDEVILVGGSTRIPAVQELVKDFFGKEPNKSVNPD 359
Query: 2381 KAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGE 2440
+ V GAAIQ L G+ + LLLDV PLSLGIET+GG++ K+I RNTTIP S
Sbjct: 360 EVVAIGAAIQGGVLKGDVK---DVLLLDVTPLSLGIETLGGVMTKLIERNTTIPTKKSQV 416
Query: 2441 FTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADGLLS 2500
F+T DNQ A+ I V+QGE + + + L FEL IPP P G +I+VT+ +DA+G+L
Sbjct: 417 FSTAADNQPAVDIHVLQGERPMAADNKSLGRFELTGIPPAPRGVPQIEVTFDIDANGILH 476
Query: 2501 IFAYEKISGKKKFITIKPFYNMNLDEIK 2528
+ A +K +GK++ ITI ++ +EI+
Sbjct: 477 VSAKDKGTGKEQSITITASSGLSEEEIE 504
|
Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved [Protein fate, Protein folding and stabilization]. Length = 595 |
| >gnl|CDD|234715 PRK00290, dnaK, molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Score = 444 bits (1146), Expect = e-137
Identities = 225/515 (43%), Positives = 310/515 (60%), Gaps = 35/515 (6%)
Query: 640 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAK---ITQNID 696
IGID GTTNS VA++ P+V+++ G PS+V + DG+ VG+ AK +T +
Sbjct: 5 IGIDLGTTNSCVAVMEGGEPKVIENAEGARTTPSVVAFTKDGERLVGQPAKRQAVT---N 61
Query: 697 PKNTISSIKRFIARDLKNIN--TNSFPYDFQNKFGMLHIKTISGIK-SPIEISAQIFITL 753
P+NTI SIKR + R + + PY I G K +P EISA I L
Sbjct: 62 PENTIFSIKRLMGRRDEEVQKDIKLVPYKIVKADNGDAWVEIDGKKYTPQEISAMILQKL 121
Query: 754 KKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDK 813
KK AE+ + ++ AVITVPAYFND QRQ TK+A K+AGL VLR++NEPT+AA+AY LDK
Sbjct: 122 KKDAEDYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDK 181
Query: 814 NIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLK 873
E I VYDLGGGTFD+SIL+ +GVF+VLS GD++LGGDDFD + ++ F K
Sbjct: 182 KGDEKI-LVYDLGGGTFDVSILEIGDGVFEVLSTNGDTHLGGDDFDQRIIDYLADE-FKK 239
Query: 874 K----LSYKDVNILMIKSREI-----KELLSYQSSVKLNVKL-------SDKKIVNITID 917
+ L KD + + + +E EL S Q + + L S K + I +
Sbjct: 240 ENGIDLR-KDK-MALQRLKEAAEKAKIELSSAQQT---EINLPFITADASGPKHLEIKLT 294
Query: 918 MKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTL 977
+F +T+ LV RTI +AL DA L++ DI+ VILVGGSTRM + E V FF
Sbjct: 295 RAKFEELTEDLVERTIEPCKQALKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFFGKEP 354
Query: 978 LTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTI 1037
++PD+ V GAAIQ L+G+ + LLLDV PLSLGIET+GG++ K+I RNTTI
Sbjct: 355 NKGVNPDEVVAIGAAIQGGVLAGDV---KDVLLLDVTPLSLGIETLGGVMTKLIERNTTI 411
Query: 1038 PCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQV 1097
P S F+T DNQ A+ I V+QGE E+ + + L F L IPP P G +I+VT+ +
Sbjct: 412 PTKKSQVFSTAADNQPAVTIHVLQGEREMAADNKSLGRFNLTGIPPAPRGVPQIEVTFDI 471
Query: 1098 DADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIK 1132
DA+G++ + A +K +GK++ ITI ++ +EI+
Sbjct: 472 DANGIVHVSAKDKGTGKEQSITITASSGLSDEEIE 506
|
Length = 627 |
| >gnl|CDD|234715 PRK00290, dnaK, molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Score = 444 bits (1146), Expect = e-137
Identities = 225/515 (43%), Positives = 310/515 (60%), Gaps = 35/515 (6%)
Query: 2036 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAK---ITQNID 2092
IGID GTTNS VA++ P+V+++ G PS+V + DG+ VG+ AK +T +
Sbjct: 5 IGIDLGTTNSCVAVMEGGEPKVIENAEGARTTPSVVAFTKDGERLVGQPAKRQAVT---N 61
Query: 2093 PKNTISSIKRFIARDLKNIN--TNSFPYDFQNKFGMLHIKTISGIK-SPIEISAQIFITL 2149
P+NTI SIKR + R + + PY I G K +P EISA I L
Sbjct: 62 PENTIFSIKRLMGRRDEEVQKDIKLVPYKIVKADNGDAWVEIDGKKYTPQEISAMILQKL 121
Query: 2150 KKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDK 2209
KK AE+ + ++ AVITVPAYFND QRQ TK+A K+AGL VLR++NEPT+AA+AY LDK
Sbjct: 122 KKDAEDYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDK 181
Query: 2210 NIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLK 2269
E I VYDLGGGTFD+SIL+ +GVF+VLS GD++LGGDDFD + ++ F K
Sbjct: 182 KGDEKI-LVYDLGGGTFDVSILEIGDGVFEVLSTNGDTHLGGDDFDQRIIDYLADE-FKK 239
Query: 2270 K----LSYKDVNILMIKSREI-----KELLSYQSSVKLNVKL-------SDKKIVNITID 2313
+ L KD + + + +E EL S Q + + L S K + I +
Sbjct: 240 ENGIDLR-KDK-MALQRLKEAAEKAKIELSSAQQT---EINLPFITADASGPKHLEIKLT 294
Query: 2314 MKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTL 2373
+F +T+ LV RTI +AL DA L++ DI+ VILVGGSTRM + E V FF
Sbjct: 295 RAKFEELTEDLVERTIEPCKQALKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFFGKEP 354
Query: 2374 LTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTI 2433
++PD+ V GAAIQ L+G+ + LLLDV PLSLGIET+GG++ K+I RNTTI
Sbjct: 355 NKGVNPDEVVAIGAAIQGGVLAGDV---KDVLLLDVTPLSLGIETLGGVMTKLIERNTTI 411
Query: 2434 PCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQV 2493
P S F+T DNQ A+ I V+QGE E+ + + L F L IPP P G +I+VT+ +
Sbjct: 412 PTKKSQVFSTAADNQPAVTIHVLQGEREMAADNKSLGRFNLTGIPPAPRGVPQIEVTFDI 471
Query: 2494 DADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIK 2528
DA+G++ + A +K +GK++ ITI ++ +EI+
Sbjct: 472 DANGIVHVSAKDKGTGKEQSITITASSGLSDEEIE 506
|
Length = 627 |
| >gnl|CDD|163191 TIGR03235, DNA_S_dndA, cysteine desulfurase DndA | Back alignment and domain information |
|---|
Score = 406 bits (1046), Expect = e-128
Identities = 170/353 (48%), Positives = 239/353 (67%), Gaps = 6/353 (1%)
Query: 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
+D++ATTPIDP V + M+P+L +FGNP+SR H +G A+KA+E+AR +VA+ + AD E
Sbjct: 2 LDHNATTPIDPAVAEAMLPWLLEEFGNPSSRTHEFGHNAKKAVERARKQVAEALGADTEE 61
Query: 61 IIWTSGATESNNLAIKGAAHFYKKRG-KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK 119
+I+TSGATESNNLAI G A +++G KHIIT EH +VL+ IR LE +GF VTYL
Sbjct: 62 VIFTSGATESNNLAILGLARAGEQKGKKHIITSAIEHPAVLEPIRALERNGFTVTYLPVD 121
Query: 120 NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGK 179
+G I + +L + I DT+LVS+M VNNE G IQPI EI E+ + FH DAAQ VGK
Sbjct: 122 ESGRIDVDELADAIRPDTLLVSIMHVNNETGSIQPIREIAEVLEAHEAFFHVDAAQVVGK 181
Query: 180 IDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRN--PRTRIEAQIHGGGHEYGLRSGTLA 237
I +++ ++DL+S S HKIYGPKGIGAL IR+ P+ ++ + GGG E GLR GTL
Sbjct: 182 ITVDLSADRIDLISCSGHKIYGPKGIGALVIRKRGKPKAPLKPIMFGGGQERGLRPGTLP 241
Query: 238 THQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNIS 297
H IVGMGEA +AR + ++ ++ +L + L + +NGD IPH LN S
Sbjct: 242 VHLIVGMGEAAEIARRNAQAWEVKLRAMRNQLRDALQTL--GVKLNGDPAETIPHILNFS 299
Query: 298 FNFIEGESLLMAIK-DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFT 349
+ + E+L++ ++ D AVS+GSAC+S+ EPS+VL+A+G + + A +IRF+
Sbjct: 300 IDGVNSEALIVNLRADAAVSTGSACSSSKYEPSHVLQAMGLDTDRARGAIRFS 352
|
This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase [DNA metabolism, Restriction/modification]. Length = 353 |
| >gnl|CDD|163191 TIGR03235, DNA_S_dndA, cysteine desulfurase DndA | Back alignment and domain information |
|---|
Score = 403 bits (1037), Expect = e-127
Identities = 169/349 (48%), Positives = 235/349 (67%), Gaps = 6/349 (1%)
Query: 1401 ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWT 1460
ATTPIDP V + M+P+L +FGNP+SR H +G A+KA+E+AR +VA+ + AD E+I+T
Sbjct: 6 ATTPIDPAVAEAMLPWLLEEFGNPSSRTHEFGHNAKKAVERARKQVAEALGADTEEVIFT 65
Query: 1461 SGATESNNLAIKGAAHFYKKRG-KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGL 1519
SGATESNNLAI G A +++G KHIIT EH +VL+ IR LE +GF VTYL +G
Sbjct: 66 SGATESNNLAILGLARAGEQKGKKHIITSAIEHPAVLEPIRALERNGFTVTYLPVDESGR 125
Query: 1520 ITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDIN 1579
I + +L + I DT+LVS+M VNNE G IQPI EI E+ + FH DAAQ VGKI ++
Sbjct: 126 IDVDELADAIRPDTLLVSIMHVNNETGSIQPIREIAEVLEAHEAFFHVDAAQVVGKITVD 185
Query: 1580 IQNYKVDLMSFSAHKIYGPKGIGALYIRRN--PRTRIEAQIHGGGHEYGLRSGTLATHQI 1637
+ ++DL+S S HKIYGPKGIGAL IR+ P+ ++ + GGG E GLR GTL H I
Sbjct: 186 LSADRIDLISCSGHKIYGPKGIGALVIRKRGKPKAPLKPIMFGGGQERGLRPGTLPVHLI 245
Query: 1638 VGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI 1697
VGMGEA +AR + ++ ++ +L + L + +NGD IPH LN S + +
Sbjct: 246 VGMGEAAEIARRNAQAWEVKLRAMRNQLRDALQTL--GVKLNGDPAETIPHILNFSIDGV 303
Query: 1698 EGESLLMAIK-DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFT 1745
E+L++ ++ D AVS+GSAC+S+ EPS+VL+A+G + + A +IRF+
Sbjct: 304 NSEALIVNLRADAAVSTGSACSSSKYEPSHVLQAMGLDTDRARGAIRFS 352
|
This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase [DNA metabolism, Restriction/modification]. Length = 353 |
| >gnl|CDD|184039 PRK13411, PRK13411, molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Score = 397 bits (1021), Expect = e-120
Identities = 205/496 (41%), Positives = 295/496 (59%), Gaps = 19/496 (3%)
Query: 640 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 699
IGID GTTNS VA++ P V+ + G PSIV + G VG+ AK + +N
Sbjct: 5 IGIDLGTTNSCVAVLEGGKPIVIPNSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVTNAEN 64
Query: 700 TISSIKRFIAR--DLKNINTNSFPYD-FQNKFGMLHIKTISGIKSPIEISAQIFITLKKI 756
T+ SIKRFI R D + PY + + ++++ +P EISA I LK+
Sbjct: 65 TVYSIKRFIGRRWDDTEEERSRVPYTCVKGRDDTVNVQIRGRNYTPQEISAMILQKLKQD 124
Query: 757 AENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIF 816
AE + + AVITVPAYF D QRQ TK+A +AGL VLR++NEPT+AA+AY LDK
Sbjct: 125 AEAYLGEPVTQAVITVPAYFTDAQRQATKDAGTIAGLEVLRIINEPTAAALAYGLDKQDQ 184
Query: 817 EGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKK-- 874
E + V+DLGGGTFD+SIL+ +GVF+V + G+++LGGDDFD C+ W+V+N F ++
Sbjct: 185 EQLILVFDLGGGTFDVSILQLGDGVFEVKATAGNNHLGGDDFDNCIVDWLVEN-FQQQEG 243
Query: 875 --LSYKDVNILMIKSREIKELLSYQSSVKLNVKL-------SDKKIVNITIDMKQFFTIT 925
LS + + ++ K + S + ++ L + K + + + +F +T
Sbjct: 244 IDLSQDKMALQRLREAAEKAKIELSSMLTTSINLPFITADETGPKHLEMELTRAKFEELT 303
Query: 926 QHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKT-TLLTSIDPD 984
+ LV TI +AL DA L +DI+ VILVGGSTR+ + E + FF S++PD
Sbjct: 304 KDLVEATIEPMQQALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVNPD 363
Query: 985 KAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGE 1044
+AV GAAIQA L G + LLLDV PLSLGIET+G + KII RNTTIP S S
Sbjct: 364 EAVALGAAIQAGVLGGEV---KDLLLLDVTPLSLGIETLGEVFTKIIERNTTIPTSKSQV 420
Query: 1045 FTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADGLLS 1104
F+T D QT++ I V+QGE + K+ + L F L IPP P G +I+V++++D +G+L
Sbjct: 421 FSTATDGQTSVEIHVLQGERAMAKDNKSLGKFLLTGIPPAPRGVPQIEVSFEIDVNGILK 480
Query: 1105 IFAYEKISGKKKFITI 1120
+ A ++ +G+++ I I
Sbjct: 481 VSAQDQGTGREQSIRI 496
|
Length = 653 |
| >gnl|CDD|184039 PRK13411, PRK13411, molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Score = 397 bits (1021), Expect = e-120
Identities = 205/496 (41%), Positives = 295/496 (59%), Gaps = 19/496 (3%)
Query: 2036 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 2095
IGID GTTNS VA++ P V+ + G PSIV + G VG+ AK + +N
Sbjct: 5 IGIDLGTTNSCVAVLEGGKPIVIPNSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVTNAEN 64
Query: 2096 TISSIKRFIAR--DLKNINTNSFPYD-FQNKFGMLHIKTISGIKSPIEISAQIFITLKKI 2152
T+ SIKRFI R D + PY + + ++++ +P EISA I LK+
Sbjct: 65 TVYSIKRFIGRRWDDTEEERSRVPYTCVKGRDDTVNVQIRGRNYTPQEISAMILQKLKQD 124
Query: 2153 AENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIF 2212
AE + + AVITVPAYF D QRQ TK+A +AGL VLR++NEPT+AA+AY LDK
Sbjct: 125 AEAYLGEPVTQAVITVPAYFTDAQRQATKDAGTIAGLEVLRIINEPTAAALAYGLDKQDQ 184
Query: 2213 EGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKK-- 2270
E + V+DLGGGTFD+SIL+ +GVF+V + G+++LGGDDFD C+ W+V+N F ++
Sbjct: 185 EQLILVFDLGGGTFDVSILQLGDGVFEVKATAGNNHLGGDDFDNCIVDWLVEN-FQQQEG 243
Query: 2271 --LSYKDVNILMIKSREIKELLSYQSSVKLNVKL-------SDKKIVNITIDMKQFFTIT 2321
LS + + ++ K + S + ++ L + K + + + +F +T
Sbjct: 244 IDLSQDKMALQRLREAAEKAKIELSSMLTTSINLPFITADETGPKHLEMELTRAKFEELT 303
Query: 2322 QHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKT-TLLTSIDPD 2380
+ LV TI +AL DA L +DI+ VILVGGSTR+ + E + FF S++PD
Sbjct: 304 KDLVEATIEPMQQALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVNPD 363
Query: 2381 KAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGE 2440
+AV GAAIQA L G + LLLDV PLSLGIET+G + KII RNTTIP S S
Sbjct: 364 EAVALGAAIQAGVLGGEV---KDLLLLDVTPLSLGIETLGEVFTKIIERNTTIPTSKSQV 420
Query: 2441 FTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADGLLS 2500
F+T D QT++ I V+QGE + K+ + L F L IPP P G +I+V++++D +G+L
Sbjct: 421 FSTATDGQTSVEIHVLQGERAMAKDNKSLGKFLLTGIPPAPRGVPQIEVSFEIDVNGILK 480
Query: 2501 IFAYEKISGKKKFITI 2516
+ A ++ +G+++ I I
Sbjct: 481 VSAQDQGTGREQSIRI 496
|
Length = 653 |
| >gnl|CDD|214360 CHL00094, dnaK, heat shock protein 70 | Back alignment and domain information |
|---|
Score = 391 bits (1005), Expect = e-119
Identities = 222/518 (42%), Positives = 310/518 (59%), Gaps = 41/518 (7%)
Query: 640 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 699
+GID GTTNS+VA++ P V+ + G+ PSIV Y G + VG+ AK I+P+N
Sbjct: 5 VGIDLGTTNSVVAVMEGGKPTVIPNAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVINPEN 64
Query: 700 TISSIKRFIARDLKNINTNS--FPYDFQNKFGMLHIKTISGIK----SPIEISAQIFITL 753
T S+KRFI R I+ + Y + +IK SP EISAQ+ L
Sbjct: 65 TFYSVKRFIGRKFSEISEEAKQVSYKVKTD-SNGNIKIECPALNKDFSPEEISAQV---L 120
Query: 754 KKIAENA---VNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYK 810
+K+ E+A + + AVITVPAYFND QRQ TK+A K+AGL VLR++NEPT+A++AY
Sbjct: 121 RKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAASLAYG 180
Query: 811 LDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNA 870
LDK E I V+DLGGGTFD+SIL+ +GVF+VLS GD++LGGDDFD + +W++K
Sbjct: 181 LDKKNNETIL-VFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKKIVNWLIKE- 238
Query: 871 FLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSD-----------------KKIVN 913
F KK I + K R+ + L+ +++ K ++LS+ K +
Sbjct: 239 FKKK-----EGIDLSKDRQALQRLT-EAAEKAKIELSNLTQTEINLPFITATQTGPKHIE 292
Query: 914 ITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFF 973
T+ +F + L+NR + AL DA L DI+ V+LVGGSTR+ I E V
Sbjct: 293 KTLTRAKFEELCSDLINRCRIPVENALKDAKLDKSDIDEVVLVGGSTRIPAIQELVKKLL 352
Query: 974 KTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFR 1033
S++PD+ V GAA+QA L+G + D LLLDV PLSLG+ET+GG++ KII R
Sbjct: 353 GKKPNQSVNPDEVVAIGAAVQAGVLAGE--VKD-ILLLDVTPLSLGVETLGGVMTKIIPR 409
Query: 1034 NTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKV 1093
NTTIP S F+T DNQT + I V+QGE EL K+ + L F L IPP P G +I+V
Sbjct: 410 NTTIPTKKSEVFSTAVDNQTNVEIHVLQGERELAKDNKSLGTFRLDGIPPAPRGVPQIEV 469
Query: 1094 TYQVDADGLLSIFAYEKISGKKKFITIKPFYNMNLDEI 1131
T+ +DA+G+LS+ A +K +GK++ ITI+ + DE+
Sbjct: 470 TFDIDANGILSVTAKDKGTGKEQSITIQGASTLPKDEV 507
|
Length = 621 |
| >gnl|CDD|214360 CHL00094, dnaK, heat shock protein 70 | Back alignment and domain information |
|---|
Score = 391 bits (1005), Expect = e-119
Identities = 222/518 (42%), Positives = 310/518 (59%), Gaps = 41/518 (7%)
Query: 2036 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 2095
+GID GTTNS+VA++ P V+ + G+ PSIV Y G + VG+ AK I+P+N
Sbjct: 5 VGIDLGTTNSVVAVMEGGKPTVIPNAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVINPEN 64
Query: 2096 TISSIKRFIARDLKNINTNS--FPYDFQNKFGMLHIKTISGIK----SPIEISAQIFITL 2149
T S+KRFI R I+ + Y + +IK SP EISAQ+ L
Sbjct: 65 TFYSVKRFIGRKFSEISEEAKQVSYKVKTD-SNGNIKIECPALNKDFSPEEISAQV---L 120
Query: 2150 KKIAENA---VNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYK 2206
+K+ E+A + + AVITVPAYFND QRQ TK+A K+AGL VLR++NEPT+A++AY
Sbjct: 121 RKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAASLAYG 180
Query: 2207 LDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNA 2266
LDK E I V+DLGGGTFD+SIL+ +GVF+VLS GD++LGGDDFD + +W++K
Sbjct: 181 LDKKNNETIL-VFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKKIVNWLIKE- 238
Query: 2267 FLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSD-----------------KKIVN 2309
F KK I + K R+ + L+ +++ K ++LS+ K +
Sbjct: 239 FKKK-----EGIDLSKDRQALQRLT-EAAEKAKIELSNLTQTEINLPFITATQTGPKHIE 292
Query: 2310 ITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFF 2369
T+ +F + L+NR + AL DA L DI+ V+LVGGSTR+ I E V
Sbjct: 293 KTLTRAKFEELCSDLINRCRIPVENALKDAKLDKSDIDEVVLVGGSTRIPAIQELVKKLL 352
Query: 2370 KTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFR 2429
S++PD+ V GAA+QA L+G + D LLLDV PLSLG+ET+GG++ KII R
Sbjct: 353 GKKPNQSVNPDEVVAIGAAVQAGVLAGE--VKD-ILLLDVTPLSLGVETLGGVMTKIIPR 409
Query: 2430 NTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKV 2489
NTTIP S F+T DNQT + I V+QGE EL K+ + L F L IPP P G +I+V
Sbjct: 410 NTTIPTKKSEVFSTAVDNQTNVEIHVLQGERELAKDNKSLGTFRLDGIPPAPRGVPQIEV 469
Query: 2490 TYQVDADGLLSIFAYEKISGKKKFITIKPFYNMNLDEI 2527
T+ +DA+G+LS+ A +K +GK++ ITI+ + DE+
Sbjct: 470 TFDIDANGILSVTAKDKGTGKEQSITIQGASTLPKDEV 507
|
Length = 621 |
| >gnl|CDD|234955 PRK01433, hscA, chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Score = 385 bits (990), Expect = e-117
Identities = 211/530 (39%), Positives = 301/530 (56%), Gaps = 61/530 (11%)
Query: 620 MALLQISEPDDISVKNKC-VSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYL 678
M +++I EP+ K + +++GIDFGTTNSL+AI N +V+K LIP+ + +
Sbjct: 1 MQIIEIREPEQADFKQERQIAVGIDFGTTNSLIAIATNRKVKVIKSIDDKELIPTTIDFT 60
Query: 679 PDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNI----------------NTNSFPY 722
+ I + SIKR + LK I N++
Sbjct: 61 SNNFT-----------IGNNKGLRSIKRLFGKTLKEILNTPALFSLVKDYLDVNSSELKL 109
Query: 723 DFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQ 782
+F NK + EI+A+IFI LK AE + I AVITVPA+FND R
Sbjct: 110 NFANK-------QLR----IPEIAAEIFIYLKNQAEEQLKTNITKAVITVPAHFNDAARG 158
Query: 783 FTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVF 842
AAK+AG VLRL+ EPT+AA AY L+KN +G + VYDLGGGTFD+SIL + G+F
Sbjct: 159 EVMLAAKIAGFEVLRLIAEPTAAAYAYGLNKNQ-KGCYLVYDLGGGTFDVSILNIQEGIF 217
Query: 843 KVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKL 902
+V++ GD+ LGG+D D ++ K + + +++ KE L+Y+ S
Sbjct: 218 QVIATNGDNMLGGNDIDV-----VITQYLCNKFDLPNSIDTLQLAKKAKETLTYKDSFNN 272
Query: 903 NVKLSDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRM 962
+ NI+I+ + + LV RTI ++ + L A +I+ VILVGG+TR+
Sbjct: 273 D---------NISINKQTLEQLILPLVERTINIAQECLEQAG--NPNIDGVILVGGATRI 321
Query: 963 KHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQA-NFLSGNRGIDDNFLLLDVIPLSLGIE 1021
I + + FK +L+ IDPDKAVV+GAA+QA N ++ + N LL+DV+PLSLG+E
Sbjct: 322 PLIKDELYKAFKVDILSDIDPDKAVVWGAALQAENLIAPHT----NSLLIDVVPLSLGME 377
Query: 1022 TIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDI 1081
GG+VEKII RNT IP S EFTT+ DNQT I ++QGE E+ +C+ LA FEL+ +
Sbjct: 378 LYGGIVEKIIMRNTPIPISVVKEFTTYADNQTGIQFHILQGEREMAADCRSLARFELKGL 437
Query: 1082 PPMPAGRARIKVTYQVDADGLLSIFAYEKISGKKKFITIKPFYNMNLDEI 1131
PPM AG R +VT+ +DADG+LS+ AYEKIS I +KP + ++ EI
Sbjct: 438 PPMKAGSIRAEVTFAIDADGILSVSAYEKISNTSHAIEVKPNHGIDKTEI 487
|
Length = 595 |
| >gnl|CDD|234955 PRK01433, hscA, chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Score = 385 bits (990), Expect = e-117
Identities = 211/530 (39%), Positives = 301/530 (56%), Gaps = 61/530 (11%)
Query: 2016 MALLQISEPDDISVKNKC-VSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYL 2074
M +++I EP+ K + +++GIDFGTTNSL+AI N +V+K LIP+ + +
Sbjct: 1 MQIIEIREPEQADFKQERQIAVGIDFGTTNSLIAIATNRKVKVIKSIDDKELIPTTIDFT 60
Query: 2075 PDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNI----------------NTNSFPY 2118
+ I + SIKR + LK I N++
Sbjct: 61 SNNFT-----------IGNNKGLRSIKRLFGKTLKEILNTPALFSLVKDYLDVNSSELKL 109
Query: 2119 DFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQ 2178
+F NK + EI+A+IFI LK AE + I AVITVPA+FND R
Sbjct: 110 NFANK-------QLR----IPEIAAEIFIYLKNQAEEQLKTNITKAVITVPAHFNDAARG 158
Query: 2179 FTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVF 2238
AAK+AG VLRL+ EPT+AA AY L+KN +G + VYDLGGGTFD+SIL + G+F
Sbjct: 159 EVMLAAKIAGFEVLRLIAEPTAAAYAYGLNKNQ-KGCYLVYDLGGGTFDVSILNIQEGIF 217
Query: 2239 KVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKL 2298
+V++ GD+ LGG+D D ++ K + + +++ KE L+Y+ S
Sbjct: 218 QVIATNGDNMLGGNDIDV-----VITQYLCNKFDLPNSIDTLQLAKKAKETLTYKDSFNN 272
Query: 2299 NVKLSDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRM 2358
+ NI+I+ + + LV RTI ++ + L A +I+ VILVGG+TR+
Sbjct: 273 D---------NISINKQTLEQLILPLVERTINIAQECLEQAG--NPNIDGVILVGGATRI 321
Query: 2359 KHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQA-NFLSGNRGIDDNFLLLDVIPLSLGIE 2417
I + + FK +L+ IDPDKAVV+GAA+QA N ++ + N LL+DV+PLSLG+E
Sbjct: 322 PLIKDELYKAFKVDILSDIDPDKAVVWGAALQAENLIAPHT----NSLLIDVVPLSLGME 377
Query: 2418 TIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDI 2477
GG+VEKII RNT IP S EFTT+ DNQT I ++QGE E+ +C+ LA FEL+ +
Sbjct: 378 LYGGIVEKIIMRNTPIPISVVKEFTTYADNQTGIQFHILQGEREMAADCRSLARFELKGL 437
Query: 2478 PPMPAGRARIKVTYQVDADGLLSIFAYEKISGKKKFITIKPFYNMNLDEI 2527
PPM AG R +VT+ +DADG+LS+ AYEKIS I +KP + ++ EI
Sbjct: 438 PPMKAGSIRAEVTFAIDADGILSVSAYEKISNTSHAIEVKPNHGIDKTEI 487
|
Length = 595 |
| >gnl|CDD|184038 PRK13410, PRK13410, molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Score = 380 bits (979), Expect = e-115
Identities = 199/520 (38%), Positives = 318/520 (61%), Gaps = 41/520 (7%)
Query: 640 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 699
+GID GTTNS+VA++ P V+ + G PS+V + DG++ VG+ A+ ++P+N
Sbjct: 5 VGIDLGTTNSVVAVMEGGKPVVIANAEGMRTTPSVVGFTKDGELLVGQLARRQLVLNPQN 64
Query: 700 TISSIKRFIARDLKNINTNS--FPYDFQ-NKFGMLHIKTISGIK--SPIEISAQIFITLK 754
T ++KRFI R ++ S PY + N+ G + IK + +P E+SA I L+
Sbjct: 65 TFYNLKRFIGRRYDELDPESKRVPYTIRRNEQGNVRIKCPRLEREFAPEELSAMI---LR 121
Query: 755 KIAENA---VNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKL 811
K+A++A + + GAVITVPAYFND QRQ T++A ++AGL V R+LNEPT+AA+AY L
Sbjct: 122 KLADDASRYLGEPVTGAVITVPAYFNDSQRQATRDAGRIAGLEVERILNEPTAAALAYGL 181
Query: 812 DKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAF 871
D++ + + V+DLGGGTFD+S+L+ NGVF+V + GD+ LGG+DFD + W+ F
Sbjct: 182 DRSSSQTVL-VFDLGGGTFDVSLLEVGNGVFEVKATSGDTQLGGNDFDKRIVDWLA-EQF 239
Query: 872 LKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNI----------------- 914
L+K I + + R+ + L+ +++ K ++LS + +I
Sbjct: 240 LEK-----EGIDLRRDRQALQRLT-EAAEKAKIELSGVSVTDISLPFITATEDGPKHIET 293
Query: 915 TIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFK 974
+D KQF ++ L++R + +AL DA L+ +DI+ V+LVGGSTRM + + V
Sbjct: 294 RLDRKQFESLCGDLLDRLLRPVKRALKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLIP 353
Query: 975 TTLLTSIDPDKAVVFGAAIQANFLSGN-RGIDDNFLLLDVIPLSLGIETIGGLVEKIIFR 1033
+++PD+ V GAAIQA L+G + + LLLDV PLSLG+ETIGG+++K+I R
Sbjct: 354 REPNQNVNPDEVVAVGAAIQAGILAGELKDL----LLLDVTPLSLGLETIGGVMKKLIPR 409
Query: 1034 NTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKV 1093
NTTIP S F+T ++NQ+++ I V QGE E+ + + L F+L IPP P G +++V
Sbjct: 410 NTTIPVRRSDVFSTSENNQSSVEIHVWQGEREMASDNKSLGRFKLSGIPPAPRGVPQVQV 469
Query: 1094 TYQVDADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKN 1133
+ +DA+G+L + A ++ +G+++ +TI+ ++ E+
Sbjct: 470 AFDIDANGILQVSATDRTTGREQSVTIQGASTLSEQEVNR 509
|
Length = 668 |
| >gnl|CDD|184038 PRK13410, PRK13410, molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Score = 380 bits (979), Expect = e-115
Identities = 199/520 (38%), Positives = 318/520 (61%), Gaps = 41/520 (7%)
Query: 2036 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 2095
+GID GTTNS+VA++ P V+ + G PS+V + DG++ VG+ A+ ++P+N
Sbjct: 5 VGIDLGTTNSVVAVMEGGKPVVIANAEGMRTTPSVVGFTKDGELLVGQLARRQLVLNPQN 64
Query: 2096 TISSIKRFIARDLKNINTNS--FPYDFQ-NKFGMLHIKTISGIK--SPIEISAQIFITLK 2150
T ++KRFI R ++ S PY + N+ G + IK + +P E+SA I L+
Sbjct: 65 TFYNLKRFIGRRYDELDPESKRVPYTIRRNEQGNVRIKCPRLEREFAPEELSAMI---LR 121
Query: 2151 KIAENA---VNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKL 2207
K+A++A + + GAVITVPAYFND QRQ T++A ++AGL V R+LNEPT+AA+AY L
Sbjct: 122 KLADDASRYLGEPVTGAVITVPAYFNDSQRQATRDAGRIAGLEVERILNEPTAAALAYGL 181
Query: 2208 DKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAF 2267
D++ + + V+DLGGGTFD+S+L+ NGVF+V + GD+ LGG+DFD + W+ F
Sbjct: 182 DRSSSQTVL-VFDLGGGTFDVSLLEVGNGVFEVKATSGDTQLGGNDFDKRIVDWLA-EQF 239
Query: 2268 LKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNI----------------- 2310
L+K I + + R+ + L+ +++ K ++LS + +I
Sbjct: 240 LEK-----EGIDLRRDRQALQRLT-EAAEKAKIELSGVSVTDISLPFITATEDGPKHIET 293
Query: 2311 TIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFK 2370
+D KQF ++ L++R + +AL DA L+ +DI+ V+LVGGSTRM + + V
Sbjct: 294 RLDRKQFESLCGDLLDRLLRPVKRALKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLIP 353
Query: 2371 TTLLTSIDPDKAVVFGAAIQANFLSGN-RGIDDNFLLLDVIPLSLGIETIGGLVEKIIFR 2429
+++PD+ V GAAIQA L+G + + LLLDV PLSLG+ETIGG+++K+I R
Sbjct: 354 REPNQNVNPDEVVAVGAAIQAGILAGELKDL----LLLDVTPLSLGLETIGGVMKKLIPR 409
Query: 2430 NTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKV 2489
NTTIP S F+T ++NQ+++ I V QGE E+ + + L F+L IPP P G +++V
Sbjct: 410 NTTIPVRRSDVFSTSENNQSSVEIHVWQGEREMASDNKSLGRFKLSGIPPAPRGVPQVQV 469
Query: 2490 TYQVDADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKN 2529
+ +DA+G+L + A ++ +G+++ +TI+ ++ E+
Sbjct: 470 AFDIDANGILQVSATDRTTGREQSVTIQGASTLSEQEVNR 509
|
Length = 668 |
| >gnl|CDD|240403 PTZ00400, PTZ00400, DnaK-type molecular chaperone; Provisional | Back alignment and domain information |
|---|
Score = 376 bits (967), Expect = e-113
Identities = 209/498 (41%), Positives = 302/498 (60%), Gaps = 21/498 (4%)
Query: 640 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 699
+GID GTTNS VAI+ + P+V+++ G PS+V + DG+ VG AK +P+N
Sbjct: 44 VGIDLGTTNSCVAIMEGSQPKVIENSEGMRTTPSVVAFTEDGQRLVGIVAKRQAVTNPEN 103
Query: 700 TISSIKRFIARDLKNINT----NSFPYDF-QNKFGMLHIKTISGIKSPIEISAQIFITLK 754
T+ + KR I R T PY + G I+ SP +I A + +K
Sbjct: 104 TVFATKRLIGRRYDEDATKKEQKILPYKIVRASNGDAWIEAQGKKYSPSQIGAFVLEKMK 163
Query: 755 KIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKN 814
+ AE+ + ++ AVITVPAYFND QRQ TK+A K+AGL+VLR++NEPT+AA+A+ +DKN
Sbjct: 164 ETAESYLGRKVKQAVITVPAYFNDSQRQATKDAGKIAGLDVLRIINEPTAAALAFGMDKN 223
Query: 815 IFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKK 874
+ I AVYDLGGGTFDISIL+ GVF+V + G+++LGG+DFD + ++++ F K+
Sbjct: 224 DGKTI-AVYDLGGGTFDISILEILGGVFEVKATNGNTSLGGEDFDQRILNYLIAE-FKKQ 281
Query: 875 --LSYKDVNILMIKSREIKEL----LSYQSSVKLNVKL-----SDKKIVNITIDMKQFFT 923
+ K + + + RE E LS ++ ++N+ S K + I + +
Sbjct: 282 QGIDLKKDKLALQRLREAAETAKIELSSKTQTEINLPFITADQSGPKHLQIKLSRAKLEE 341
Query: 924 ITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDP 983
+T L+ +TI K + DA + ++N+VILVGG TRM + E V F ++P
Sbjct: 342 LTHDLLKKTIEPCEKCIKDAGVKKDELNDVILVGGMTRMPKVSETVKKIFGKEPSKGVNP 401
Query: 984 DKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSG 1043
D+AV GAAIQA L G I D LLLDV PLSLGIET+GG+ ++I RNTTIP S
Sbjct: 402 DEAVAMGAAIQAGVLKGE--IKD-LLLLDVTPLSLGIETLGGVFTRLINRNTTIPTKKSQ 458
Query: 1044 EFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADGLL 1103
F+T DNQT + IKV QGE E+ + ++L F+L IPP P G +I+VT+ VDA+G++
Sbjct: 459 VFSTAADNQTQVGIKVFQGEREMAADNKLLGQFDLVGIPPAPRGVPQIEVTFDVDANGIM 518
Query: 1104 SIFAYEKISGKKKFITIK 1121
+I A +K +GKK+ ITI+
Sbjct: 519 NISAVDKSTGKKQEITIQ 536
|
Length = 663 |
| >gnl|CDD|240403 PTZ00400, PTZ00400, DnaK-type molecular chaperone; Provisional | Back alignment and domain information |
|---|
Score = 376 bits (967), Expect = e-113
Identities = 209/498 (41%), Positives = 302/498 (60%), Gaps = 21/498 (4%)
Query: 2036 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 2095
+GID GTTNS VAI+ + P+V+++ G PS+V + DG+ VG AK +P+N
Sbjct: 44 VGIDLGTTNSCVAIMEGSQPKVIENSEGMRTTPSVVAFTEDGQRLVGIVAKRQAVTNPEN 103
Query: 2096 TISSIKRFIARDLKNINT----NSFPYDF-QNKFGMLHIKTISGIKSPIEISAQIFITLK 2150
T+ + KR I R T PY + G I+ SP +I A + +K
Sbjct: 104 TVFATKRLIGRRYDEDATKKEQKILPYKIVRASNGDAWIEAQGKKYSPSQIGAFVLEKMK 163
Query: 2151 KIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKN 2210
+ AE+ + ++ AVITVPAYFND QRQ TK+A K+AGL+VLR++NEPT+AA+A+ +DKN
Sbjct: 164 ETAESYLGRKVKQAVITVPAYFNDSQRQATKDAGKIAGLDVLRIINEPTAAALAFGMDKN 223
Query: 2211 IFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKK 2270
+ I AVYDLGGGTFDISIL+ GVF+V + G+++LGG+DFD + ++++ F K+
Sbjct: 224 DGKTI-AVYDLGGGTFDISILEILGGVFEVKATNGNTSLGGEDFDQRILNYLIAE-FKKQ 281
Query: 2271 --LSYKDVNILMIKSREIKEL----LSYQSSVKLNVKL-----SDKKIVNITIDMKQFFT 2319
+ K + + + RE E LS ++ ++N+ S K + I + +
Sbjct: 282 QGIDLKKDKLALQRLREAAETAKIELSSKTQTEINLPFITADQSGPKHLQIKLSRAKLEE 341
Query: 2320 ITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDP 2379
+T L+ +TI K + DA + ++N+VILVGG TRM + E V F ++P
Sbjct: 342 LTHDLLKKTIEPCEKCIKDAGVKKDELNDVILVGGMTRMPKVSETVKKIFGKEPSKGVNP 401
Query: 2380 DKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSG 2439
D+AV GAAIQA L G I D LLLDV PLSLGIET+GG+ ++I RNTTIP S
Sbjct: 402 DEAVAMGAAIQAGVLKGE--IKD-LLLLDVTPLSLGIETLGGVFTRLINRNTTIPTKKSQ 458
Query: 2440 EFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADGLL 2499
F+T DNQT + IKV QGE E+ + ++L F+L IPP P G +I+VT+ VDA+G++
Sbjct: 459 VFSTAADNQTQVGIKVFQGEREMAADNKLLGQFDLVGIPPAPRGVPQIEVTFDVDANGIM 518
Query: 2500 SIFAYEKISGKKKFITIK 2517
+I A +K +GKK+ ITI+
Sbjct: 519 NISAVDKSTGKKQEITIQ 536
|
Length = 663 |
| >gnl|CDD|215618 PLN03184, PLN03184, chloroplast Hsp70; Provisional | Back alignment and domain information |
|---|
Score = 372 bits (957), Expect = e-112
Identities = 205/514 (39%), Positives = 300/514 (58%), Gaps = 33/514 (6%)
Query: 640 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 699
+GID GTTNS VA + P ++ + G PS+V Y +G VG+ AK ++P+N
Sbjct: 42 VGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPEN 101
Query: 700 TISSIKRFIARDLKNINTNS--FPYDF---QNKFGMLHIKTISGIKSPIEISAQIFITLK 754
T S+KRFI R + ++ S Y +N L I + EISAQ+ L
Sbjct: 102 TFFSVKRFIGRKMSEVDEESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLV 161
Query: 755 KIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKN 814
A +N+++ AVITVPAYFND QR TK+A ++AGL VLR++NEPT+A++AY +K
Sbjct: 162 DDASKFLNDKVTKAVITVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFEKK 221
Query: 815 IFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKK 874
E I V+DLGGGTFD+S+L+ +GVF+VLS GD++LGGDDFD + W+ N
Sbjct: 222 SNETIL-VFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNF---- 276
Query: 875 LSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNI-----------------TID 917
KD I ++K ++ + L+ +++ K ++LS +I T+
Sbjct: 277 --KKDEGIDLLKDKQALQRLT-EAAEKAKIELSSLTQTSISLPFITATADGPKHIDTTLT 333
Query: 918 MKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTL 977
+F + L++R AL DA L+ KDI+ VILVGGSTR+ + E V
Sbjct: 334 RAKFEELCSDLLDRCKTPVENALRDAKLSFKDIDEVILVGGSTRIPAVQELVKKLTGKDP 393
Query: 978 LTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTI 1037
+++PD+ V GAA+QA L+G + +LLDV PLSLG+ET+GG++ KII RNTT+
Sbjct: 394 NVTVNPDEVVALGAAVQAGVLAGEVS---DIVLLDVTPLSLGLETLGGVMTKIIPRNTTL 450
Query: 1038 PCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQV 1097
P S S F+T D QT++ I V+QGE E V++ + L +F L IPP P G +I+V + +
Sbjct: 451 PTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDI 510
Query: 1098 DADGLLSIFAYEKISGKKKFITIKPFYNMNLDEI 1131
DA+G+LS+ A +K +GKK+ ITI + DE+
Sbjct: 511 DANGILSVSATDKGTGKKQDITITGASTLPKDEV 544
|
Length = 673 |
| >gnl|CDD|215618 PLN03184, PLN03184, chloroplast Hsp70; Provisional | Back alignment and domain information |
|---|
Score = 372 bits (957), Expect = e-112
Identities = 205/514 (39%), Positives = 300/514 (58%), Gaps = 33/514 (6%)
Query: 2036 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 2095
+GID GTTNS VA + P ++ + G PS+V Y +G VG+ AK ++P+N
Sbjct: 42 VGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPEN 101
Query: 2096 TISSIKRFIARDLKNINTNS--FPYDF---QNKFGMLHIKTISGIKSPIEISAQIFITLK 2150
T S+KRFI R + ++ S Y +N L I + EISAQ+ L
Sbjct: 102 TFFSVKRFIGRKMSEVDEESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLV 161
Query: 2151 KIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKN 2210
A +N+++ AVITVPAYFND QR TK+A ++AGL VLR++NEPT+A++AY +K
Sbjct: 162 DDASKFLNDKVTKAVITVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFEKK 221
Query: 2211 IFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKK 2270
E I V+DLGGGTFD+S+L+ +GVF+VLS GD++LGGDDFD + W+ N
Sbjct: 222 SNETIL-VFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNF---- 276
Query: 2271 LSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNI-----------------TID 2313
KD I ++K ++ + L+ +++ K ++LS +I T+
Sbjct: 277 --KKDEGIDLLKDKQALQRLT-EAAEKAKIELSSLTQTSISLPFITATADGPKHIDTTLT 333
Query: 2314 MKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTL 2373
+F + L++R AL DA L+ KDI+ VILVGGSTR+ + E V
Sbjct: 334 RAKFEELCSDLLDRCKTPVENALRDAKLSFKDIDEVILVGGSTRIPAVQELVKKLTGKDP 393
Query: 2374 LTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTI 2433
+++PD+ V GAA+QA L+G + +LLDV PLSLG+ET+GG++ KII RNTT+
Sbjct: 394 NVTVNPDEVVALGAAVQAGVLAGEVS---DIVLLDVTPLSLGLETLGGVMTKIIPRNTTL 450
Query: 2434 PCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQV 2493
P S S F+T D QT++ I V+QGE E V++ + L +F L IPP P G +I+V + +
Sbjct: 451 PTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDI 510
Query: 2494 DADGLLSIFAYEKISGKKKFITIKPFYNMNLDEI 2527
DA+G+LS+ A +K +GKK+ ITI + DE+
Sbjct: 511 DANGILSVSATDKGTGKKQDITITGASTLPKDEV 544
|
Length = 673 |
| >gnl|CDD|212667 cd10170, HSP70_NBD, Nucleotide-binding domain of the HSP70 family | Back alignment and domain information |
|---|
Score = 349 bits (899), Expect = e-108
Identities = 147/368 (39%), Positives = 209/368 (56%), Gaps = 12/368 (3%)
Query: 640 IGIDFGTTNSLVAIVRN-NIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPK 698
IGID GTTNS VA V N PE++ + G PS+V + DG++ VG+ AK +P+
Sbjct: 1 IGIDLGTTNSAVAYVDNGGKPEIIPNGEGSRTTPSVVYFDGDGEVLVGEAAKRQALDNPE 60
Query: 699 NTISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTISGIK----SPIEISAQIFITLK 754
NT+ KR I R + S G I + SP E+SA I LK
Sbjct: 61 NTVGDFKRLIGRKFDDPLVQSAKKVIGVDRGAPIIPVPVELGGKKYSPEEVSALILKKLK 120
Query: 755 KIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLD-K 813
+ AE + + AVITVPAYFND QR+ TK AA++AGLNV+RL+NEPT+AA+AY LD K
Sbjct: 121 EDAEAYLGEPVTEAVITVPAYFNDAQREATKEAAEIAGLNVVRLINEPTAAALAYGLDKK 180
Query: 814 NIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLK 873
+ V+DLGGGTFD+S+++ + GVF+VL+ GGD++LGGDDFD L ++ + K
Sbjct: 181 DEKGRTILVFDLGGGTFDVSLVEVEGGVFEVLATGGDNHLGGDDFDNALADYLAEKFKEK 240
Query: 874 -----KLSYKDVNILMIKSREIKELLSYQSSVKLNVK-LSDKKIVNITIDMKQFFTITQH 927
+L + + L + + K LS + + L + + + ++F + +
Sbjct: 241 GGIDLRLDPRALRRLKEAAEKAKIALSSSEEATITLPGLGSGGDLEVELTREEFEELIRP 300
Query: 928 LVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAV 987
L+ RTI L + L DA L +DI+ V+LVGGS+R+ + E + F L SIDPD+AV
Sbjct: 301 LLERTIDLVERVLADAGLKPEDIDAVLLVGGSSRIPLVRELLEELFGKKPLRSIDPDEAV 360
Query: 988 VFGAAIQA 995
GAAI A
Sbjct: 361 ALGAAIYA 368
|
HSP70 (70-kDa heat shock protein) family chaperones assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some HSP70 family members are not chaperones but instead, function as NEFs to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle, some may function as both chaperones and NEFs. Length = 369 |
| >gnl|CDD|212667 cd10170, HSP70_NBD, Nucleotide-binding domain of the HSP70 family | Back alignment and domain information |
|---|
Score = 349 bits (899), Expect = e-108
Identities = 147/368 (39%), Positives = 209/368 (56%), Gaps = 12/368 (3%)
Query: 2036 IGIDFGTTNSLVAIVRN-NIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPK 2094
IGID GTTNS VA V N PE++ + G PS+V + DG++ VG+ AK +P+
Sbjct: 1 IGIDLGTTNSAVAYVDNGGKPEIIPNGEGSRTTPSVVYFDGDGEVLVGEAAKRQALDNPE 60
Query: 2095 NTISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTISGIK----SPIEISAQIFITLK 2150
NT+ KR I R + S G I + SP E+SA I LK
Sbjct: 61 NTVGDFKRLIGRKFDDPLVQSAKKVIGVDRGAPIIPVPVELGGKKYSPEEVSALILKKLK 120
Query: 2151 KIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLD-K 2209
+ AE + + AVITVPAYFND QR+ TK AA++AGLNV+RL+NEPT+AA+AY LD K
Sbjct: 121 EDAEAYLGEPVTEAVITVPAYFNDAQREATKEAAEIAGLNVVRLINEPTAAALAYGLDKK 180
Query: 2210 NIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLK 2269
+ V+DLGGGTFD+S+++ + GVF+VL+ GGD++LGGDDFD L ++ + K
Sbjct: 181 DEKGRTILVFDLGGGTFDVSLVEVEGGVFEVLATGGDNHLGGDDFDNALADYLAEKFKEK 240
Query: 2270 -----KLSYKDVNILMIKSREIKELLSYQSSVKLNVK-LSDKKIVNITIDMKQFFTITQH 2323
+L + + L + + K LS + + L + + + ++F + +
Sbjct: 241 GGIDLRLDPRALRRLKEAAEKAKIALSSSEEATITLPGLGSGGDLEVELTREEFEELIRP 300
Query: 2324 LVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAV 2383
L+ RTI L + L DA L +DI+ V+LVGGS+R+ + E + F L SIDPD+AV
Sbjct: 301 LLERTIDLVERVLADAGLKPEDIDAVLLVGGSSRIPLVRELLEELFGKKPLRSIDPDEAV 360
Query: 2384 VFGAAIQA 2391
GAAI A
Sbjct: 361 ALGAAIYA 368
|
HSP70 (70-kDa heat shock protein) family chaperones assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some HSP70 family members are not chaperones but instead, function as NEFs to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle, some may function as both chaperones and NEFs. Length = 369 |
| >gnl|CDD|140213 PTZ00186, PTZ00186, heat shock 70 kDa precursor protein; Provisional | Back alignment and domain information |
|---|
Score = 348 bits (893), Expect = e-103
Identities = 199/517 (38%), Positives = 305/517 (58%), Gaps = 35/517 (6%)
Query: 640 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 699
IG+D GTT S VA + + VL++ G+ PS+V + K+ VG AK +P++
Sbjct: 30 IGVDLGTTYSCVATMDGDKARVLENSEGFRTTPSVVAFKGSEKL-VGLAAKRQAITNPQS 88
Query: 700 TISSIKRFIAR---------DLKNINTNSFPYDF-QNKFGMLHIKTISGIK-SPIEISAQ 748
T ++KR I R D+KN+ PY + G ++ +G + SP +I A
Sbjct: 89 TFYAVKRLIGRRFEDEHIQKDIKNV-----PYKIVRAGNGDAWVQDGNGKQYSPSQIGAF 143
Query: 749 IFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIA 808
+ +K+ AEN + +++ AV+T PAYFND QRQ TK+A +AGLNV+R++NEPT+AA+A
Sbjct: 144 VLEKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAGTIAGLNVIRVVNEPTAAALA 203
Query: 809 YKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVK 868
Y +DK + + AVYDLGGGTFDIS+L+ GVF+V + GD++LGG+DFD L +I++
Sbjct: 204 YGMDKTK-DSLIAVYDLGGGTFDISVLEIAGGVFEVKATNGDTHLGGEDFDLALSDYILE 262
Query: 869 NAFLKKLSYKDVN---ILMIKSREIKELLSYQSSVKLNVKLSDKKI---------VNITI 916
+K S D++ + + + RE E + S + +++ I + + I
Sbjct: 263 E--FRKTSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFITANADGAQHIQMHI 320
Query: 917 DMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTT 976
+F ITQ L+ R+I + + DA + +K+IN+V+LVGG TRM + E V FF+
Sbjct: 321 SRSKFEGITQRLIERSIAPCKQCMKDAGVELKEINDVVLVGGMTRMPKVVEEVKKFFQKD 380
Query: 977 LLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTT 1036
++PD+AV GAA L RG +LLDV PLSLGIET+GG+ ++I +NTT
Sbjct: 381 PFRGVNPDEAVALGAATLGGVL---RGDVKGLVLLDVTPLSLGIETLGGVFTRMIPKNTT 437
Query: 1037 IPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQ 1096
IP S F+T DNQT + IKV QGE E+ + Q++ F+L IPP P G +I+VT+
Sbjct: 438 IPTKKSQTFSTAADNQTQVGIKVFQGEREMAADNQMMGQFDLVGIPPAPRGVPQIEVTFD 497
Query: 1097 VDADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKN 1133
+DA+G+ + A +K +GK + ITI ++ ++I+
Sbjct: 498 IDANGICHVTAKDKATGKTQNITITANGGLSKEQIEQ 534
|
Length = 657 |
| >gnl|CDD|140213 PTZ00186, PTZ00186, heat shock 70 kDa precursor protein; Provisional | Back alignment and domain information |
|---|
Score = 348 bits (893), Expect = e-103
Identities = 199/517 (38%), Positives = 305/517 (58%), Gaps = 35/517 (6%)
Query: 2036 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 2095
IG+D GTT S VA + + VL++ G+ PS+V + K+ VG AK +P++
Sbjct: 30 IGVDLGTTYSCVATMDGDKARVLENSEGFRTTPSVVAFKGSEKL-VGLAAKRQAITNPQS 88
Query: 2096 TISSIKRFIAR---------DLKNINTNSFPYDF-QNKFGMLHIKTISGIK-SPIEISAQ 2144
T ++KR I R D+KN+ PY + G ++ +G + SP +I A
Sbjct: 89 TFYAVKRLIGRRFEDEHIQKDIKNV-----PYKIVRAGNGDAWVQDGNGKQYSPSQIGAF 143
Query: 2145 IFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIA 2204
+ +K+ AEN + +++ AV+T PAYFND QRQ TK+A +AGLNV+R++NEPT+AA+A
Sbjct: 144 VLEKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAGTIAGLNVIRVVNEPTAAALA 203
Query: 2205 YKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVK 2264
Y +DK + + AVYDLGGGTFDIS+L+ GVF+V + GD++LGG+DFD L +I++
Sbjct: 204 YGMDKTK-DSLIAVYDLGGGTFDISVLEIAGGVFEVKATNGDTHLGGEDFDLALSDYILE 262
Query: 2265 NAFLKKLSYKDVN---ILMIKSREIKELLSYQSSVKLNVKLSDKKI---------VNITI 2312
+K S D++ + + + RE E + S + +++ I + + I
Sbjct: 263 E--FRKTSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFITANADGAQHIQMHI 320
Query: 2313 DMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTT 2372
+F ITQ L+ R+I + + DA + +K+IN+V+LVGG TRM + E V FF+
Sbjct: 321 SRSKFEGITQRLIERSIAPCKQCMKDAGVELKEINDVVLVGGMTRMPKVVEEVKKFFQKD 380
Query: 2373 LLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTT 2432
++PD+AV GAA L RG +LLDV PLSLGIET+GG+ ++I +NTT
Sbjct: 381 PFRGVNPDEAVALGAATLGGVL---RGDVKGLVLLDVTPLSLGIETLGGVFTRMIPKNTT 437
Query: 2433 IPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQ 2492
IP S F+T DNQT + IKV QGE E+ + Q++ F+L IPP P G +I+VT+
Sbjct: 438 IPTKKSQTFSTAADNQTQVGIKVFQGEREMAADNQMMGQFDLVGIPPAPRGVPQIEVTFD 497
Query: 2493 VDADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKN 2529
+DA+G+ + A +K +GK + ITI ++ ++I+
Sbjct: 498 IDANGICHVTAKDKATGKTQNITITANGGLSKEQIEQ 534
|
Length = 657 |
| >gnl|CDD|132444 TIGR03403, nifS_epsilon, cysteine desulfurase, NifS family, epsilon proteobacteria type | Back alignment and domain information |
|---|
Score = 332 bits (852), Expect = e-102
Identities = 166/372 (44%), Positives = 231/372 (62%), Gaps = 9/372 (2%)
Query: 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-DPR 59
+D +ATT +DP+V + M P+ +GNP S H +G AI +A +++ + I A D
Sbjct: 3 LDNNATTMLDPKVKELMDPFFCDIYGNPNSL-HQFGTATHPAIAEALDKLYKGINARDLD 61
Query: 60 EIIWTSGATESNNLAIKGA--AHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLK 117
+II TS ATESNN +KG K HIIT + EH +V + LE+ G VTYL
Sbjct: 62 DIIITSCATESNNWVLKGVYFDEILKGGKNHIITTEVEHPAVRATCAFLESLGVEVTYLP 121
Query: 118 PKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAV 177
G IT Q+ E I T LVSVM NNE G+I PI EIGE+C+ +GV+FH DA QA+
Sbjct: 122 INEQGTITAEQVREAITEKTALVSVMWANNETGMIFPIKEIGEICKERGVLFHTDAVQAI 181
Query: 178 GKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLA 237
GKI +++Q VD +SFSAHK +GPKG+G LYIR+ + HGG H G RSGTL
Sbjct: 182 GKIPVDVQKAGVDFLSFSAHKFHGPKGVGGLYIRKG--VELTPLFHGGEHMGGRRSGTLN 239
Query: 238 THQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNIS 297
IV MGEA RLA + E + L+ RL + L+E + ++++ GD +R+P+ + IS
Sbjct: 240 VPYIVAMGEAMRLANEYLDFEKSHVRRLRDRLEDALLE-LPDVFVVGDREHRVPNTILIS 298
Query: 298 FNFIEGESLLMAIKD--IAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTT 355
+EGE++L + IA S+GSAC S LE + V+ A+G + ELAH++IR ++ RFTT
Sbjct: 299 IKGVEGEAMLWDLNKAGIAASTGSACASEDLEANPVMVAIGADKELAHTAIRLSLSRFTT 358
Query: 356 EKEIDFTIKLLK 367
E+EID+TI++ K
Sbjct: 359 EEEIDYTIEVFK 370
|
Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PMID:11123951), so we use this designation. Length = 382 |
| >gnl|CDD|132444 TIGR03403, nifS_epsilon, cysteine desulfurase, NifS family, epsilon proteobacteria type | Back alignment and domain information |
|---|
Score = 330 bits (847), Expect = e-101
Identities = 165/369 (44%), Positives = 229/369 (62%), Gaps = 9/369 (2%)
Query: 1400 DATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-DPREII 1458
+ATT +DP+V + M P+ +GNP S H +G AI +A +++ + I A D +II
Sbjct: 6 NATTMLDPKVKELMDPFFCDIYGNPNSL-HQFGTATHPAIAEALDKLYKGINARDLDDII 64
Query: 1459 WTSGATESNNLAIKGA--AHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN 1516
TS ATESNN +KG K HIIT + EH +V + LE+ G VTYL
Sbjct: 65 ITSCATESNNWVLKGVYFDEILKGGKNHIITTEVEHPAVRATCAFLESLGVEVTYLPINE 124
Query: 1517 NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKI 1576
G IT Q+ E I T LVSVM NNE G+I PI EIGE+C+ +GV+FH DA QA+GKI
Sbjct: 125 QGTITAEQVREAITEKTALVSVMWANNETGMIFPIKEIGEICKERGVLFHTDAVQAIGKI 184
Query: 1577 DINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQ 1636
+++Q VD +SFSAHK +GPKG+G LYIR+ + HGG H G RSGTL
Sbjct: 185 PVDVQKAGVDFLSFSAHKFHGPKGVGGLYIRKG--VELTPLFHGGEHMGGRRSGTLNVPY 242
Query: 1637 IVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF 1696
IV MGEA RLA + E + L+ RL + L+E + ++++ GD +R+P+ + IS
Sbjct: 243 IVAMGEAMRLANEYLDFEKSHVRRLRDRLEDALLE-LPDVFVVGDREHRVPNTILISIKG 301
Query: 1697 IEGESLLMAIKD--IAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKE 1754
+EGE++L + IA S+GSAC S LE + V+ A+G + ELAH++IR ++ RFTTE+E
Sbjct: 302 VEGEAMLWDLNKAGIAASTGSACASEDLEANPVMVAIGADKELAHTAIRLSLSRFTTEEE 361
Query: 1755 IDFTIKLLK 1763
ID+TI++ K
Sbjct: 362 IDYTIEVFK 370
|
Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PMID:11123951), so we use this designation. Length = 382 |
| >gnl|CDD|240227 PTZ00009, PTZ00009, heat shock 70 kDa protein; Provisional | Back alignment and domain information |
|---|
Score = 341 bits (876), Expect = e-101
Identities = 195/508 (38%), Positives = 294/508 (57%), Gaps = 34/508 (6%)
Query: 639 SIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPK 698
+IGID GTT S V + +N E++ + G PS V + D + +G AK +P+
Sbjct: 6 AIGIDLGTTYSCVGVWKNENVEIIANDQGNRTTPSYVAF-TDTERLIGDAAKNQVARNPE 64
Query: 699 NTISSIKRFIARDLKNINTNS----FPYDFQNKFG---MLHIKTISGIKS--PIEISAQI 749
NT+ KR I R + S +P+ M+ + K+ P EIS+ +
Sbjct: 65 NTVFDAKRLIGRKFDDSVVQSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEEISSMV 124
Query: 750 FITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAY 809
+K+IAE + ++ AV+TVPAYFND QRQ TK+A +AGLNVLR++NEPT+AAIAY
Sbjct: 125 LQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAY 184
Query: 810 KLDK------NIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLF 863
LDK N+ ++DLGGGTFD+S+L ++G+F+V + GD++LGG+DFD L
Sbjct: 185 GLDKKGDGEKNVL-----IFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLV 239
Query: 864 SWIVKNAFLKKLSYKDVNI-------LMIKSREIKELLS--YQSSVKLNVKLSDKKIVNI 914
+ V++ F +K KD++ L + K LS Q++++++ L + N+
Sbjct: 240 EFCVQD-FKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSSTQATIEID-SLFEGIDYNV 297
Query: 915 TIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFK 974
TI +F + T+ K L DA + + ++ V+LVGGSTR+ + + +FF
Sbjct: 298 TISRARFEELCGDYFRNTLQPVEKVLKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFN 357
Query: 975 -TTLLTSIDPDKAVVFGAAIQANFLSGNR-GIDDNFLLLDVIPLSLGIETIGGLVEKIIF 1032
SI+PD+AV +GAA+QA L+G + + LLLDV PLSLG+ET GG++ K+I
Sbjct: 358 GKEPCKSINPDEAVAYGAAVQAAILTGEQSSQVQDLLLLDVTPLSLGLETAGGVMTKLIE 417
Query: 1033 RNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIK 1092
RNTTIP S FTT+ DNQ + I+V +GE + K+ +L F L IPP P G +I+
Sbjct: 418 RNTTIPTKKSQIFTTYADNQPGVLIQVFEGERAMTKDNNLLGKFHLDGIPPAPRGVPQIE 477
Query: 1093 VTYQVDADGLLSIFAYEKISGKKKFITI 1120
VT+ +DA+G+L++ A +K +GK ITI
Sbjct: 478 VTFDIDANGILNVSAEDKSTGKSNKITI 505
|
Length = 653 |
| >gnl|CDD|240227 PTZ00009, PTZ00009, heat shock 70 kDa protein; Provisional | Back alignment and domain information |
|---|
Score = 341 bits (876), Expect = e-101
Identities = 195/508 (38%), Positives = 294/508 (57%), Gaps = 34/508 (6%)
Query: 2035 SIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPK 2094
+IGID GTT S V + +N E++ + G PS V + D + +G AK +P+
Sbjct: 6 AIGIDLGTTYSCVGVWKNENVEIIANDQGNRTTPSYVAF-TDTERLIGDAAKNQVARNPE 64
Query: 2095 NTISSIKRFIARDLKNINTNS----FPYDFQNKFG---MLHIKTISGIKS--PIEISAQI 2145
NT+ KR I R + S +P+ M+ + K+ P EIS+ +
Sbjct: 65 NTVFDAKRLIGRKFDDSVVQSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEEISSMV 124
Query: 2146 FITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAY 2205
+K+IAE + ++ AV+TVPAYFND QRQ TK+A +AGLNVLR++NEPT+AAIAY
Sbjct: 125 LQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAY 184
Query: 2206 KLDK------NIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLF 2259
LDK N+ ++DLGGGTFD+S+L ++G+F+V + GD++LGG+DFD L
Sbjct: 185 GLDKKGDGEKNVL-----IFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLV 239
Query: 2260 SWIVKNAFLKKLSYKDVNI-------LMIKSREIKELLS--YQSSVKLNVKLSDKKIVNI 2310
+ V++ F +K KD++ L + K LS Q++++++ L + N+
Sbjct: 240 EFCVQD-FKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSSTQATIEID-SLFEGIDYNV 297
Query: 2311 TIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFK 2370
TI +F + T+ K L DA + + ++ V+LVGGSTR+ + + +FF
Sbjct: 298 TISRARFEELCGDYFRNTLQPVEKVLKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFN 357
Query: 2371 -TTLLTSIDPDKAVVFGAAIQANFLSGNR-GIDDNFLLLDVIPLSLGIETIGGLVEKIIF 2428
SI+PD+AV +GAA+QA L+G + + LLLDV PLSLG+ET GG++ K+I
Sbjct: 358 GKEPCKSINPDEAVAYGAAVQAAILTGEQSSQVQDLLLLDVTPLSLGLETAGGVMTKLIE 417
Query: 2429 RNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIK 2488
RNTTIP S FTT+ DNQ + I+V +GE + K+ +L F L IPP P G +I+
Sbjct: 418 RNTTIPTKKSQIFTTYADNQPGVLIQVFEGERAMTKDNNLLGKFHLDGIPPAPRGVPQIE 477
Query: 2489 VTYQVDADGLLSIFAYEKISGKKKFITI 2516
VT+ +DA+G+L++ A +K +GK ITI
Sbjct: 478 VTFDIDANGILNVSAEDKSTGKSNKITI 505
|
Length = 653 |
| >gnl|CDD|212676 cd10234, HSPA9-Ssq1-like_NBD, Nucleotide-binding domain of human HSPA9 and similar proteins | Back alignment and domain information |
|---|
Score = 313 bits (803), Expect = 4e-95
Identities = 157/375 (41%), Positives = 218/375 (58%), Gaps = 19/375 (5%)
Query: 640 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 699
IGID GTTNS VA++ P V+ + G PS+V + G+ VG+ AK +P+N
Sbjct: 5 IGIDLGTTNSCVAVMEGGEPTVIPNAEGSRTTPSVVAFTKKGERLVGQPAKRQAVTNPEN 64
Query: 700 TISSIKRFIAR---DLKNINTNSFPY-DFQNKFGMLHIKTISGIKSPIEISAQIFITLKK 755
TI SIKRF+ R +++ + + + I + +P EISA I LK+
Sbjct: 65 TIFSIKRFMGRKFDEVEEERKVPYKVVVDEGGNYKVEIDSNGKDYTPQEISAMILQKLKE 124
Query: 756 IAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNI 815
AE + ++ AVITVPAYFND QRQ TK+A K+AGL VLR++NEPT+AA+AY LDK
Sbjct: 125 DAEAYLGEKVTEAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKG 184
Query: 816 FEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKK- 874
E I VYDLGGGTFD+SIL+ +GVF+VL+ GD++LGGDDFD + W+V+ F K+
Sbjct: 185 NEKI-LVYDLGGGTFDVSILEIGDGVFEVLATNGDTHLGGDDFDQRIIDWLVEE-FKKEE 242
Query: 875 ---LSYKDVNILM-IK--SREIKELLSYQSSVKLN-----VKLSDKKIVNITIDMKQFFT 923
L KD L +K + + K LS + ++N + K + +T+ +F
Sbjct: 243 GIDLR-KDKMALQRLKEAAEKAKIELSSVTETEINLPFITADATGPKHLEMTLTRAKFEE 301
Query: 924 ITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDP 983
+T+ LV RTI +AL DA L+ DI+ VILVGGSTR+ + E V F ++P
Sbjct: 302 LTEDLVERTIEPVKQALKDAKLSPSDIDEVILVGGSTRIPAVQELVKELFGKEPNKGVNP 361
Query: 984 DKAVVFGAAIQANFL 998
D+ V GAAIQ L
Sbjct: 362 DEVVAIGAAIQGGVL 376
|
This subfamily includes human mitochondrial HSPA9 (also known as 70-kDa heat shock protein 9, CSA; MOT; MOT2; GRP75; PBP74; GRP-75; HSPA9B; MTHSP75; the gene encoding HSPA9 maps to 5q31.1), Escherichia coli DnaK, Saccharomyces cerevisiae Stress-seventy subfamily Q protein 1/Ssq1p (also called Ssc2p, Ssh1p, mtHSP70 homolog), and S. cerevisiae Stress-Seventy subfamily C/Ssc1p (also called mtHSP70, Endonuclease SceI 75 kDa subunit). It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs); for Escherichia coli DnaK, these are the DnaJ and GrpE, respectively. Length = 376 |
| >gnl|CDD|212676 cd10234, HSPA9-Ssq1-like_NBD, Nucleotide-binding domain of human HSPA9 and similar proteins | Back alignment and domain information |
|---|
Score = 313 bits (803), Expect = 4e-95
Identities = 157/375 (41%), Positives = 218/375 (58%), Gaps = 19/375 (5%)
Query: 2036 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 2095
IGID GTTNS VA++ P V+ + G PS+V + G+ VG+ AK +P+N
Sbjct: 5 IGIDLGTTNSCVAVMEGGEPTVIPNAEGSRTTPSVVAFTKKGERLVGQPAKRQAVTNPEN 64
Query: 2096 TISSIKRFIAR---DLKNINTNSFPY-DFQNKFGMLHIKTISGIKSPIEISAQIFITLKK 2151
TI SIKRF+ R +++ + + + I + +P EISA I LK+
Sbjct: 65 TIFSIKRFMGRKFDEVEEERKVPYKVVVDEGGNYKVEIDSNGKDYTPQEISAMILQKLKE 124
Query: 2152 IAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNI 2211
AE + ++ AVITVPAYFND QRQ TK+A K+AGL VLR++NEPT+AA+AY LDK
Sbjct: 125 DAEAYLGEKVTEAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKG 184
Query: 2212 FEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKK- 2270
E I VYDLGGGTFD+SIL+ +GVF+VL+ GD++LGGDDFD + W+V+ F K+
Sbjct: 185 NEKI-LVYDLGGGTFDVSILEIGDGVFEVLATNGDTHLGGDDFDQRIIDWLVEE-FKKEE 242
Query: 2271 ---LSYKDVNILM-IK--SREIKELLSYQSSVKLN-----VKLSDKKIVNITIDMKQFFT 2319
L KD L +K + + K LS + ++N + K + +T+ +F
Sbjct: 243 GIDLR-KDKMALQRLKEAAEKAKIELSSVTETEINLPFITADATGPKHLEMTLTRAKFEE 301
Query: 2320 ITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDP 2379
+T+ LV RTI +AL DA L+ DI+ VILVGGSTR+ + E V F ++P
Sbjct: 302 LTEDLVERTIEPVKQALKDAKLSPSDIDEVILVGGSTRIPAVQELVKELFGKEPNKGVNP 361
Query: 2380 DKAVVFGAAIQANFL 2394
D+ V GAAIQ L
Sbjct: 362 DEVVAIGAAIQGGVL 376
|
This subfamily includes human mitochondrial HSPA9 (also known as 70-kDa heat shock protein 9, CSA; MOT; MOT2; GRP75; PBP74; GRP-75; HSPA9B; MTHSP75; the gene encoding HSPA9 maps to 5q31.1), Escherichia coli DnaK, Saccharomyces cerevisiae Stress-seventy subfamily Q protein 1/Ssq1p (also called Ssc2p, Ssh1p, mtHSP70 homolog), and S. cerevisiae Stress-Seventy subfamily C/Ssc1p (also called mtHSP70, Endonuclease SceI 75 kDa subunit). It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs); for Escherichia coli DnaK, these are the DnaJ and GrpE, respectively. Length = 376 |
| >gnl|CDD|215829 pfam00266, Aminotran_5, Aminotransferase class-V | Back alignment and domain information |
|---|
Score = 303 bits (779), Expect = 4e-92
Identities = 121/378 (32%), Positives = 177/378 (46%), Gaps = 32/378 (8%)
Query: 2 DYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPR-E 60
D +ATT V+D + Y GN H G A +A E+AR +VA+ I A E
Sbjct: 4 DSAATTQKPQAVLDALQEYYTDYNGNVHRGVHHLGKEATQAYEEAREKVAEFINAPSDEE 63
Query: 61 IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLEND-GFRVTYLKPK 119
II+TSG TE+ NL K G I+ + EH + L ++L G V +
Sbjct: 64 IIFTSGTTEAINLVAISLGRSLKP-GDEILVTEMEHHANLVPWQELAKRTGATVRVIPVD 122
Query: 120 NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGK 179
NGL+ L LE+ + T LV++ V+N G + P+ EIG+L G + DAAQAVG
Sbjct: 123 PNGLLDLDALEKLLTPRTKLVAITHVSNVTGTVNPVEEIGKLAHEYGALVVVDAAQAVGH 182
Query: 180 IDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGG-------HEYG-- 230
I++Q VD ++FS HK+YGP GIG LY RR+ ++ + GGG E
Sbjct: 183 RPIDVQALGVDFLAFSGHKLYGPTGIGVLYGRRDLLEKLPPLLGGGGMIDTVSLQETTFA 242
Query: 231 -----LRSGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEIYING 284
+GT I+G+G A LA I ++ K L LY L +I I + G
Sbjct: 243 DAPSKFEAGTPNIAGIIGLGAALDYLAEIGLEAIEKHERELAAYLYERL-LAIPGIRLYG 301
Query: 285 DMNNRIPHNLNISFNFIEGESL--LMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELA 342
R P ++ +F + + L+ + IAV SG C +P V L
Sbjct: 302 PPAERRPSIISFNFPGVHPHDVATLLDERGIAVRSGHHCA----QPLMVRLGL------- 350
Query: 343 HSSIRFTIGRFTTEKEID 360
++R ++ + TE+E+D
Sbjct: 351 GGTLRASLYFYNTEEEVD 368
|
This domain is found in amino transferases, and other enzymes including cysteine desulphurase EC:4.4.1.-. Length = 370 |
| >gnl|CDD|212677 cd10235, HscC_like_NBD, Nucleotide-binding domain of Escherichia coli HscC and similar proteins | Back alignment and domain information |
|---|
Score = 300 bits (772), Expect = 1e-91
Identities = 138/359 (38%), Positives = 198/359 (55%), Gaps = 24/359 (6%)
Query: 640 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 699
IGID GTTNSLVA+ ++ ++ + G +L PS+V DG+I VGK A+ P
Sbjct: 1 IGIDLGTTNSLVAVWQDGKARLIPNALGEYLTPSVVSVDEDGEILVGKAARERLITHPDL 60
Query: 700 TISSIKRFIARDLK-NINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAE 758
T +S KRF+ D K + F E+S+ + +LK+ AE
Sbjct: 61 TAASFKRFMGTDKKYRLGKREF--------------------RAEELSSLVLRSLKEDAE 100
Query: 759 NAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFEG 818
+ + AVI+VPAYFND QR+ TK A +LAGL V RL+NEPT+AA+AY L E
Sbjct: 101 AYLGEPVTEAVISVPAYFNDEQRKATKRAGELAGLKVERLINEPTAAALAYGLHDKDEET 160
Query: 819 IFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLK--KLS 876
F V+DLGGGTFD+S+L+ +GV +V + GD+ LGG+DF L +K L KL
Sbjct: 161 KFLVFDLGGGTFDVSVLELFDGVMEVRASAGDNYLGGEDFTRALAEAFLKKHGLDFEKLD 220
Query: 877 YKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNRTILLS 936
++ L+ + K LS Q +++V++ + + T+ ++F I Q L+ R
Sbjct: 221 PSELARLLRAAERAKRALSDQEEAEMSVRIEG-EELEYTLTREEFEEICQPLLERLRQPI 279
Query: 937 SKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQA 995
+AL DA L DI+ +ILVGG+TRM + + VS F L ++PD+ V GAAIQA
Sbjct: 280 ERALRDARLKPSDIDEIILVGGATRMPVVRKLVSRLFGRFPLVHLNPDEVVALGAAIQA 338
|
This subfamily includes Escherichia coli HscC (also called heat shock cognate protein C, Hsc62, or YbeW) and the the putative DnaK-like protein Escherichia coli ECs0689. It belongs to the heat shock protein 70 (Hsp70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, Hsp70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Two genes in the vicinity of the HscC gene code for potential cochaperones: J-domain containing proteins, DjlB/YbeS and DjlC/YbeV. HscC and its co-chaperone partners may play a role in the SOS DNA damage response. HscC does not appear to require a NEF. Length = 339 |
| >gnl|CDD|212677 cd10235, HscC_like_NBD, Nucleotide-binding domain of Escherichia coli HscC and similar proteins | Back alignment and domain information |
|---|
Score = 300 bits (772), Expect = 1e-91
Identities = 138/359 (38%), Positives = 198/359 (55%), Gaps = 24/359 (6%)
Query: 2036 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 2095
IGID GTTNSLVA+ ++ ++ + G +L PS+V DG+I VGK A+ P
Sbjct: 1 IGIDLGTTNSLVAVWQDGKARLIPNALGEYLTPSVVSVDEDGEILVGKAARERLITHPDL 60
Query: 2096 TISSIKRFIARDLK-NINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAE 2154
T +S KRF+ D K + F E+S+ + +LK+ AE
Sbjct: 61 TAASFKRFMGTDKKYRLGKREF--------------------RAEELSSLVLRSLKEDAE 100
Query: 2155 NAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFEG 2214
+ + AVI+VPAYFND QR+ TK A +LAGL V RL+NEPT+AA+AY L E
Sbjct: 101 AYLGEPVTEAVISVPAYFNDEQRKATKRAGELAGLKVERLINEPTAAALAYGLHDKDEET 160
Query: 2215 IFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLK--KLS 2272
F V+DLGGGTFD+S+L+ +GV +V + GD+ LGG+DF L +K L KL
Sbjct: 161 KFLVFDLGGGTFDVSVLELFDGVMEVRASAGDNYLGGEDFTRALAEAFLKKHGLDFEKLD 220
Query: 2273 YKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNRTILLS 2332
++ L+ + K LS Q +++V++ + + T+ ++F I Q L+ R
Sbjct: 221 PSELARLLRAAERAKRALSDQEEAEMSVRIEG-EELEYTLTREEFEEICQPLLERLRQPI 279
Query: 2333 SKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQA 2391
+AL DA L DI+ +ILVGG+TRM + + VS F L ++PD+ V GAAIQA
Sbjct: 280 ERALRDARLKPSDIDEIILVGGATRMPVVRKLVSRLFGRFPLVHLNPDEVVALGAAIQA 338
|
This subfamily includes Escherichia coli HscC (also called heat shock cognate protein C, Hsc62, or YbeW) and the the putative DnaK-like protein Escherichia coli ECs0689. It belongs to the heat shock protein 70 (Hsp70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, Hsp70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Two genes in the vicinity of the HscC gene code for potential cochaperones: J-domain containing proteins, DjlB/YbeS and DjlC/YbeV. HscC and its co-chaperone partners may play a role in the SOS DNA damage response. HscC does not appear to require a NEF. Length = 339 |
| >gnl|CDD|215829 pfam00266, Aminotran_5, Aminotransferase class-V | Back alignment and domain information |
|---|
Score = 301 bits (772), Expect = 4e-91
Identities = 120/375 (32%), Positives = 175/375 (46%), Gaps = 32/375 (8%)
Query: 1401 ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPR-EIIW 1459
ATT V+D + Y GN H G A +A E+AR +VA+ I A EII+
Sbjct: 7 ATTQKPQAVLDALQEYYTDYNGNVHRGVHHLGKEATQAYEEAREKVAEFINAPSDEEIIF 66
Query: 1460 TSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLEND-GFRVTYLKPKNNG 1518
TSG TE+ NL K G I+ + EH + L ++L G V + NG
Sbjct: 67 TSGTTEAINLVAISLGRSLKP-GDEILVTEMEHHANLVPWQELAKRTGATVRVIPVDPNG 125
Query: 1519 LITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDI 1578
L+ L LE+ + T LV++ V+N G + P+ EIG+L G + DAAQAVG I
Sbjct: 126 LLDLDALEKLLTPRTKLVAITHVSNVTGTVNPVEEIGKLAHEYGALVVVDAAQAVGHRPI 185
Query: 1579 NIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGG-------HEYG----- 1626
++Q VD ++FS HK+YGP GIG LY RR+ ++ + GGG E
Sbjct: 186 DVQALGVDFLAFSGHKLYGPTGIGVLYGRRDLLEKLPPLLGGGGMIDTVSLQETTFADAP 245
Query: 1627 --LRSGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMN 1683
+GT I+G+G A LA I ++ K L LY L +I I + G
Sbjct: 246 SKFEAGTPNIAGIIGLGAALDYLAEIGLEAIEKHERELAAYLYERL-LAIPGIRLYGPPA 304
Query: 1684 NRIPHNLNISFNFIEGESL--LMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSS 1741
R P ++ +F + + L+ + IAV SG C +P V L +
Sbjct: 305 ERRPSIISFNFPGVHPHDVATLLDERGIAVRSGHHCA----QPLMVRLGL-------GGT 353
Query: 1742 IRFTIGRFTTEKEID 1756
+R ++ + TE+E+D
Sbjct: 354 LRASLYFYNTEEEVD 368
|
This domain is found in amino transferases, and other enzymes including cysteine desulphurase EC:4.4.1.-. Length = 370 |
| >gnl|CDD|212683 cd11733, HSPA9-like_NBD, Nucleotide-binding domain of human HSPA9, Escherichia coli DnaK, and similar proteins | Back alignment and domain information |
|---|
Score = 292 bits (750), Expect = 4e-88
Identities = 156/381 (40%), Positives = 215/381 (56%), Gaps = 30/381 (7%)
Query: 640 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 699
IGID GTTNS VA++ P+V+++ G PS+V + DG+ VG AK +P+N
Sbjct: 5 IGIDLGTTNSCVAVMEGKTPKVIENAEGARTTPSVVAFTKDGERLVGMPAKRQAVTNPEN 64
Query: 700 TISSIKRFIAR---------DLKNINTNSFPYDF-QNKFGMLHIKTISGIKSPIEISAQI 749
T+ + KR I R D+KN+ PY + G ++ SP +I A +
Sbjct: 65 TLYATKRLIGRRFDDPEVQKDIKNV-----PYKIVKASNGDAWVEAHGKKYSPSQIGAFV 119
Query: 750 FITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAY 809
+ +K+ AE + + AVITVPAYFND QRQ TK+A ++AGLNVLR++NEPT+AA+AY
Sbjct: 120 LMKMKETAEAYLGKPVKNAVITVPAYFNDSQRQATKDAGQIAGLNVLRVINEPTAAALAY 179
Query: 810 KLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKN 869
LDK + + AVYDLGGGTFDISIL+ + GVF+V S GD+ LGG+DFD L +VK
Sbjct: 180 GLDKKD-DKVIAVYDLGGGTFDISILEIQKGVFEVKSTNGDTFLGGEDFDNALLRHLVKE 238
Query: 870 AFLKKLSYKDV---NILMIKSREIKEL----LSYQSSVKLNVKL-----SDKKIVNITID 917
KK D+ N+ + + RE E LS +N+ S K +N+ +
Sbjct: 239 --FKKEQGIDLTKDNMALQRLREAAEKAKIELSSSLQTDINLPYITADASGPKHLNMKLT 296
Query: 918 MKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTL 977
+F ++ L+ RTI KAL DA ++ DI VILVGG TRM + E V F
Sbjct: 297 RAKFESLVGDLIKRTIEPCKKALKDAGVSKSDIGEVILVGGMTRMPKVQETVKEIFGKEP 356
Query: 978 LTSIDPDKAVVFGAAIQANFL 998
++PD+AV GAAIQ L
Sbjct: 357 SKGVNPDEAVAIGAAIQGGVL 377
|
This subgroup includes human mitochondrial HSPA9 (also known as 70-kDa heat shock protein 9, CSA; MOT; MOT2; GRP75; PBP74; GRP-75; HSPA9B; MTHSP75; the gene encoding HSPA9 maps to 5q31.1), Escherichia coli DnaK, and Saccharomyces cerevisiae Stress-Seventy subfamily C/Ssc1p (also called mtHSP70, Endonuclease SceI 75 kDa subunit). It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs); for Escherichia coli DnaK, these are the DnaJ and GrpE, respectively. HSPA9 is involved in multiple processses including mitochondrial import, antigen processing, control of cellular proliferation and differentiation, and regulation of glucose responses. During glucose deprivation-induced cellular stress, HSPA9 plays an important role in the suppression of apoptosis by inhibiting a conformational change in Bax that allow the release of cytochrome c. DnaK modulates the heat shock response in Escherichia coli. It protects E. coli from protein carbonylation, an irreversible oxidative modification that increases during organism aging and bacterial growth arrest. Under severe thermal stress, it functions as part of a bi-chaperone system: the DnaK system and the ring-forming AAA+ chaperone ClpB (Hsp104) system, to promote cell survival. DnaK has also been shown to cooperate with GroEL and the ribosome-associated Escherichia coli Trigger Factor in the proper folding of cytosolic proteins. S. cerevisiae Ssc1p is the major HSP70 chaperone of the mitochondrial matrix, promoting translocation of proteins from the cytosol, across the inner membrane, to the matrix, and their subsequent folding. Ssc1p interacts with Tim44, a peripheral inner membrane protein associated with the TIM23 protein translocase. It is also a subunit of the endoSceI site-specific endoDNase and is required for full endoSceI activity. Ssc1p plays roles in the import of Yfh1p, a nucleus-encoded mitochondrial protein involved in iron homeostasis (and a homolog of human frataxin, implicated in the neurodegenerative disease, Friedreich's ataxia). Ssc1 also participates in translational regulation of cytochrome c oxidase (COX) biogenesis by interacting with Mss51 and Mss51-containing complexes. Length = 377 |
| >gnl|CDD|212683 cd11733, HSPA9-like_NBD, Nucleotide-binding domain of human HSPA9, Escherichia coli DnaK, and similar proteins | Back alignment and domain information |
|---|
Score = 292 bits (750), Expect = 4e-88
Identities = 156/381 (40%), Positives = 215/381 (56%), Gaps = 30/381 (7%)
Query: 2036 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 2095
IGID GTTNS VA++ P+V+++ G PS+V + DG+ VG AK +P+N
Sbjct: 5 IGIDLGTTNSCVAVMEGKTPKVIENAEGARTTPSVVAFTKDGERLVGMPAKRQAVTNPEN 64
Query: 2096 TISSIKRFIAR---------DLKNINTNSFPYDF-QNKFGMLHIKTISGIKSPIEISAQI 2145
T+ + KR I R D+KN+ PY + G ++ SP +I A +
Sbjct: 65 TLYATKRLIGRRFDDPEVQKDIKNV-----PYKIVKASNGDAWVEAHGKKYSPSQIGAFV 119
Query: 2146 FITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAY 2205
+ +K+ AE + + AVITVPAYFND QRQ TK+A ++AGLNVLR++NEPT+AA+AY
Sbjct: 120 LMKMKETAEAYLGKPVKNAVITVPAYFNDSQRQATKDAGQIAGLNVLRVINEPTAAALAY 179
Query: 2206 KLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKN 2265
LDK + + AVYDLGGGTFDISIL+ + GVF+V S GD+ LGG+DFD L +VK
Sbjct: 180 GLDKKD-DKVIAVYDLGGGTFDISILEIQKGVFEVKSTNGDTFLGGEDFDNALLRHLVKE 238
Query: 2266 AFLKKLSYKDV---NILMIKSREIKEL----LSYQSSVKLNVKL-----SDKKIVNITID 2313
KK D+ N+ + + RE E LS +N+ S K +N+ +
Sbjct: 239 --FKKEQGIDLTKDNMALQRLREAAEKAKIELSSSLQTDINLPYITADASGPKHLNMKLT 296
Query: 2314 MKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTL 2373
+F ++ L+ RTI KAL DA ++ DI VILVGG TRM + E V F
Sbjct: 297 RAKFESLVGDLIKRTIEPCKKALKDAGVSKSDIGEVILVGGMTRMPKVQETVKEIFGKEP 356
Query: 2374 LTSIDPDKAVVFGAAIQANFL 2394
++PD+AV GAAIQ L
Sbjct: 357 SKGVNPDEAVAIGAAIQGGVL 377
|
This subgroup includes human mitochondrial HSPA9 (also known as 70-kDa heat shock protein 9, CSA; MOT; MOT2; GRP75; PBP74; GRP-75; HSPA9B; MTHSP75; the gene encoding HSPA9 maps to 5q31.1), Escherichia coli DnaK, and Saccharomyces cerevisiae Stress-Seventy subfamily C/Ssc1p (also called mtHSP70, Endonuclease SceI 75 kDa subunit). It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs); for Escherichia coli DnaK, these are the DnaJ and GrpE, respectively. HSPA9 is involved in multiple processses including mitochondrial import, antigen processing, control of cellular proliferation and differentiation, and regulation of glucose responses. During glucose deprivation-induced cellular stress, HSPA9 plays an important role in the suppression of apoptosis by inhibiting a conformational change in Bax that allow the release of cytochrome c. DnaK modulates the heat shock response in Escherichia coli. It protects E. coli from protein carbonylation, an irreversible oxidative modification that increases during organism aging and bacterial growth arrest. Under severe thermal stress, it functions as part of a bi-chaperone system: the DnaK system and the ring-forming AAA+ chaperone ClpB (Hsp104) system, to promote cell survival. DnaK has also been shown to cooperate with GroEL and the ribosome-associated Escherichia coli Trigger Factor in the proper folding of cytosolic proteins. S. cerevisiae Ssc1p is the major HSP70 chaperone of the mitochondrial matrix, promoting translocation of proteins from the cytosol, across the inner membrane, to the matrix, and their subsequent folding. Ssc1p interacts with Tim44, a peripheral inner membrane protein associated with the TIM23 protein translocase. It is also a subunit of the endoSceI site-specific endoDNase and is required for full endoSceI activity. Ssc1p plays roles in the import of Yfh1p, a nucleus-encoded mitochondrial protein involved in iron homeostasis (and a homolog of human frataxin, implicated in the neurodegenerative disease, Friedreich's ataxia). Ssc1 also participates in translational regulation of cytochrome c oxidase (COX) biogenesis by interacting with Mss51 and Mss51-containing complexes. Length = 377 |
| >gnl|CDD|212684 cd11734, Ssq1_like_NBD, Nucleotide-binding domain of Saccharomyces cerevisiae Ssq1 and similar proteins | Back alignment and domain information |
|---|
Score = 286 bits (733), Expect = 5e-86
Identities = 155/371 (41%), Positives = 209/371 (56%), Gaps = 14/371 (3%)
Query: 640 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 699
IGID GTTNS VA++ P ++++ G PSIV + G I VG+ AK + + P+N
Sbjct: 5 IGIDLGTTNSCVAVIDKTTPVIIENAEGKRTTPSIVSFTKTG-ILVGEAAKRQEALHPEN 63
Query: 700 TISSIKRFIARDLKNINTNSFPYDFQNKF-----GMLHIKTISGIKSPIEISAQIFITLK 754
T + KR I R K++ K G I T SP +I++ + LK
Sbjct: 64 TFFATKRLIGRQFKDVEVQRKMKVPYYKIVEGRNGDAWIYTNGKKYSPSQIASFVLKKLK 123
Query: 755 KIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKN 814
K AE + R+ AVITVPAYFND QRQ TK+A LAGL VLR++NEPT+AA+AY +DK
Sbjct: 124 KTAEAYLGKRVDEAVITVPAYFNDSQRQATKDAGTLAGLKVLRIINEPTAAALAYGIDKR 183
Query: 815 IFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKK 874
AVYDLGGGTFDISIL ++GVF+V + GD+ LGG+DFD + +I+K F +K
Sbjct: 184 KENKNIAVYDLGGGTFDISILNIEDGVFEVKATNGDTMLGGEDFDNAIVQYIIKE-FKRK 242
Query: 875 ----LSYKDVNILMIK--SREIKELLSYQSSVKLNVKLSDK-KIVNITIDMKQFFTITQH 927
L+ I IK + + K LS + + D K + ITI ++F + +
Sbjct: 243 YKIDLTRNKKAIQRIKEAAEKAKIELSSSEESVIELPYLDGPKHLRITITRREFEQLRKS 302
Query: 928 LVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAV 987
+ RTI + L DA L KDI+ VILVGG TRM +I V F S++PD+AV
Sbjct: 303 ICKRTIYPCKQCLKDAGLRKKDIDEVILVGGMTRMPYIQNVVQEIFGKKPSKSVNPDEAV 362
Query: 988 VFGAAIQANFL 998
GAAIQ + L
Sbjct: 363 ALGAAIQGSIL 373
|
Ssq1p (also called Stress-seventy subfamily Q protein 1, Ssc2p, Ssh1p, mtHSP70 homolog) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). S. cerevisiae Ssq1p is a mitochondrial chaperone that is involved in iron-sulfur (Fe/S) center biogenesis. Ssq1p plays a role in the maturation of Yfh1p, a nucleus-encoded mitochondrial protein involved in iron homeostasis (and a homolog of human frataxin, implicated in the neurodegenerative disease, Friedreich's ataxia). Length = 373 |
| >gnl|CDD|212684 cd11734, Ssq1_like_NBD, Nucleotide-binding domain of Saccharomyces cerevisiae Ssq1 and similar proteins | Back alignment and domain information |
|---|
Score = 286 bits (733), Expect = 5e-86
Identities = 155/371 (41%), Positives = 209/371 (56%), Gaps = 14/371 (3%)
Query: 2036 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 2095
IGID GTTNS VA++ P ++++ G PSIV + G I VG+ AK + + P+N
Sbjct: 5 IGIDLGTTNSCVAVIDKTTPVIIENAEGKRTTPSIVSFTKTG-ILVGEAAKRQEALHPEN 63
Query: 2096 TISSIKRFIARDLKNINTNSFPYDFQNKF-----GMLHIKTISGIKSPIEISAQIFITLK 2150
T + KR I R K++ K G I T SP +I++ + LK
Sbjct: 64 TFFATKRLIGRQFKDVEVQRKMKVPYYKIVEGRNGDAWIYTNGKKYSPSQIASFVLKKLK 123
Query: 2151 KIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKN 2210
K AE + R+ AVITVPAYFND QRQ TK+A LAGL VLR++NEPT+AA+AY +DK
Sbjct: 124 KTAEAYLGKRVDEAVITVPAYFNDSQRQATKDAGTLAGLKVLRIINEPTAAALAYGIDKR 183
Query: 2211 IFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKK 2270
AVYDLGGGTFDISIL ++GVF+V + GD+ LGG+DFD + +I+K F +K
Sbjct: 184 KENKNIAVYDLGGGTFDISILNIEDGVFEVKATNGDTMLGGEDFDNAIVQYIIKE-FKRK 242
Query: 2271 ----LSYKDVNILMIK--SREIKELLSYQSSVKLNVKLSDK-KIVNITIDMKQFFTITQH 2323
L+ I IK + + K LS + + D K + ITI ++F + +
Sbjct: 243 YKIDLTRNKKAIQRIKEAAEKAKIELSSSEESVIELPYLDGPKHLRITITRREFEQLRKS 302
Query: 2324 LVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAV 2383
+ RTI + L DA L KDI+ VILVGG TRM +I V F S++PD+AV
Sbjct: 303 ICKRTIYPCKQCLKDAGLRKKDIDEVILVGGMTRMPYIQNVVQEIFGKKPSKSVNPDEAV 362
Query: 2384 VFGAAIQANFL 2394
GAAIQ + L
Sbjct: 363 ALGAAIQGSIL 373
|
Ssq1p (also called Stress-seventy subfamily Q protein 1, Ssc2p, Ssh1p, mtHSP70 homolog) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). S. cerevisiae Ssq1p is a mitochondrial chaperone that is involved in iron-sulfur (Fe/S) center biogenesis. Ssq1p plays a role in the maturation of Yfh1p, a nucleus-encoded mitochondrial protein involved in iron homeostasis (and a homolog of human frataxin, implicated in the neurodegenerative disease, Friedreich's ataxia). Length = 373 |
| >gnl|CDD|179511 PRK02948, PRK02948, cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Score = 282 bits (723), Expect = 2e-84
Identities = 136/368 (36%), Positives = 193/368 (52%), Gaps = 5/368 (1%)
Query: 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
+DY+ATTP+ + FGN S H G TA ++ R A++I + +
Sbjct: 4 LDYAATTPMSKEALQTYQKAASQYFGN-ESSLHDIGGTASSLLQVCRKTFAEMIGGEEQG 62
Query: 61 IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN 120
I +TSG TESN LAI+ + + KHIIT EH S+ + LE+ G+ VT +
Sbjct: 63 IYFTSGGTESNYLAIQSLLNALPQNKKHIITTPMEHASIHSYFQSLESQGYTVTEIPVDK 122
Query: 121 NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKI 180
+GLI L LE I DT+L S+ N+EIG IQPI EIG L + V+FH D Q GK+
Sbjct: 123 SGLIRLVDLERAITPDTVLASIQHANSEIGTIQPIAEIGALLKKYNVLFHSDCVQTFGKL 182
Query: 181 DINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQ 240
I++ +D +S SAHKIYGPKG+GA+YI NP+ R + G HE G R GT+
Sbjct: 183 PIDVFEMGIDSLSVSAHKIYGPKGVGAVYI--NPQVRWKPVFPGTTHEKGFRPGTVNVPG 240
Query: 241 IVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF 300
I A M+EE R L+ + I + G + +PH + ++
Sbjct: 241 IAAFLTAAENILKNMQEESLRFKELRSYFLEQIQTLPLPIEVEGHSTSCLPHIIGVTIKG 300
Query: 301 IEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKE 358
IEG+ ++ + IA+S+GSAC EPS + A+G E A +RF+ G+ TT+ +
Sbjct: 301 IEGQYTMLECNRRGIAISTGSACQVGKQEPSKTMLAIGKTYEEAKQFVRFSFGQQTTKDQ 360
Query: 359 IDFTIKLL 366
ID TI L
Sbjct: 361 IDTTIHAL 368
|
Length = 381 |
| >gnl|CDD|179511 PRK02948, PRK02948, cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Score = 275 bits (706), Expect = 3e-82
Identities = 134/364 (36%), Positives = 189/364 (51%), Gaps = 5/364 (1%)
Query: 1401 ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWT 1460
ATTP+ + FGN S H G TA ++ R A++I + + I +T
Sbjct: 8 ATTPMSKEALQTYQKAASQYFGN-ESSLHDIGGTASSLLQVCRKTFAEMIGGEEQGIYFT 66
Query: 1461 SGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLI 1520
SG TESN LAI+ + + KHIIT EH S+ + LE+ G+ VT + +GLI
Sbjct: 67 SGGTESNYLAIQSLLNALPQNKKHIITTPMEHASIHSYFQSLESQGYTVTEIPVDKSGLI 126
Query: 1521 TLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINI 1580
L LE I DT+L S+ N+EIG IQPI EIG L + V+FH D Q GK+ I++
Sbjct: 127 RLVDLERAITPDTVLASIQHANSEIGTIQPIAEIGALLKKYNVLFHSDCVQTFGKLPIDV 186
Query: 1581 QNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGM 1640
+D +S SAHKIYGPKG+GA+YI NP+ R + G HE G R GT+ I
Sbjct: 187 FEMGIDSLSVSAHKIYGPKGVGAVYI--NPQVRWKPVFPGTTHEKGFRPGTVNVPGIAAF 244
Query: 1641 GEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGE 1700
A M+EE R L+ + I + G + +PH + ++ IEG+
Sbjct: 245 LTAAENILKNMQEESLRFKELRSYFLEQIQTLPLPIEVEGHSTSCLPHIIGVTIKGIEGQ 304
Query: 1701 SLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFT 1758
++ + IA+S+GSAC EPS + A+G E A +RF+ G+ TT+ +ID T
Sbjct: 305 YTMLECNRRGIAISTGSACQVGKQEPSKTMLAIGKTYEEAKQFVRFSFGQQTTKDQIDTT 364
Query: 1759 IKLL 1762
I L
Sbjct: 365 IHAL 368
|
Length = 381 |
| >gnl|CDD|212681 cd10241, HSPA5-like_NBD, Nucleotide-binding domain of human HSPA5 and similar proteins | Back alignment and domain information |
|---|
Score = 268 bits (686), Expect = 1e-79
Identities = 152/378 (40%), Positives = 218/378 (57%), Gaps = 30/378 (7%)
Query: 640 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 699
IGID GTT S V + +N E++ + G + PS V + DG+ +G AK +P+N
Sbjct: 4 IGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFT-DGERLIGDAAKNQATSNPEN 62
Query: 700 TISSIKRFIAR---------DLKNINTNSFPYDFQNKFGMLHIKT-ISGIK---SPIEIS 746
TI +KR I R D+K PY NK G +I+ + G K SP EIS
Sbjct: 63 TIFDVKRLIGRKFDDKEVQKDIKL-----LPYKVVNKDGKPYIEVDVKGEKKTFSPEEIS 117
Query: 747 AQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAA 806
A + +K+IAE + ++ AV+TVPAYFND QRQ TK+A +AGLNV+R++NEPT+AA
Sbjct: 118 AMVLTKMKEIAEAYLGKKVKHAVVTVPAYFNDAQRQATKDAGTIAGLNVVRIINEPTAAA 177
Query: 807 IAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWI 866
IAY LDK E V+DLGGGTFD+S+L NGVF+VL+ GD++LGG+DFD +
Sbjct: 178 IAYGLDKKGGEKNILVFDLGGGTFDVSLLTIDNGVFEVLATNGDTHLGGEDFDQRVMEHF 237
Query: 867 VKNAFLKKLSYKDV---NILMIK-SREI---KELLSYQSSVKLNVK-LSDKKIVNITIDM 918
+K KK KD+ + K RE+ K LS Q ++ ++ L D + + T+
Sbjct: 238 IK--LFKKKHGKDISKDKRALQKLRREVEKAKRALSSQHQTRIEIESLFDGEDFSETLTR 295
Query: 919 KQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLL 978
+F + L +T+ K L DA+L DI+ ++LVGGSTR+ + + + FF
Sbjct: 296 AKFEELNMDLFKKTLKPVKKVLEDADLKKSDIDEIVLVGGSTRIPKVQQLLKEFFNGKEP 355
Query: 979 T-SIDPDKAVVFGAAIQA 995
+ I+PD+AV +GAA+QA
Sbjct: 356 SRGINPDEAVAYGAAVQA 373
|
This subfamily includes human HSPA5 (also known as 70-kDa heat shock protein 5, glucose-regulated protein 78/GRP78, and immunoglobulin heavy chain-binding protein/BIP, MIF2; the gene encoding HSPA5 maps to 9q33.3.), Sacchaormyces cerevisiae Kar2p (also known as Grp78p), and related proteins. This subfamily belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. HSPA5 and Kar2p are chaperones of the endoplasmic reticulum (ER). Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Multiple ER DNAJ domain proteins have been identified and may exist in distinct complexes with HSPA5 in various locations in the ER, for example DNAJC3-p58IPK in the lumen. HSPA5-NEFs include SIL1 and an atypical HSP70 family protein HYOU1/ORP150. The ATPase activity of Kar2p is stimulated by the NEFs: Sil1p and Lhs1p. Length = 374 |
| >gnl|CDD|212681 cd10241, HSPA5-like_NBD, Nucleotide-binding domain of human HSPA5 and similar proteins | Back alignment and domain information |
|---|
Score = 268 bits (686), Expect = 1e-79
Identities = 152/378 (40%), Positives = 218/378 (57%), Gaps = 30/378 (7%)
Query: 2036 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 2095
IGID GTT S V + +N E++ + G + PS V + DG+ +G AK +P+N
Sbjct: 4 IGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFT-DGERLIGDAAKNQATSNPEN 62
Query: 2096 TISSIKRFIAR---------DLKNINTNSFPYDFQNKFGMLHIKT-ISGIK---SPIEIS 2142
TI +KR I R D+K PY NK G +I+ + G K SP EIS
Sbjct: 63 TIFDVKRLIGRKFDDKEVQKDIKL-----LPYKVVNKDGKPYIEVDVKGEKKTFSPEEIS 117
Query: 2143 AQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAA 2202
A + +K+IAE + ++ AV+TVPAYFND QRQ TK+A +AGLNV+R++NEPT+AA
Sbjct: 118 AMVLTKMKEIAEAYLGKKVKHAVVTVPAYFNDAQRQATKDAGTIAGLNVVRIINEPTAAA 177
Query: 2203 IAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWI 2262
IAY LDK E V+DLGGGTFD+S+L NGVF+VL+ GD++LGG+DFD +
Sbjct: 178 IAYGLDKKGGEKNILVFDLGGGTFDVSLLTIDNGVFEVLATNGDTHLGGEDFDQRVMEHF 237
Query: 2263 VKNAFLKKLSYKDV---NILMIK-SREI---KELLSYQSSVKLNVK-LSDKKIVNITIDM 2314
+K KK KD+ + K RE+ K LS Q ++ ++ L D + + T+
Sbjct: 238 IK--LFKKKHGKDISKDKRALQKLRREVEKAKRALSSQHQTRIEIESLFDGEDFSETLTR 295
Query: 2315 KQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLL 2374
+F + L +T+ K L DA+L DI+ ++LVGGSTR+ + + + FF
Sbjct: 296 AKFEELNMDLFKKTLKPVKKVLEDADLKKSDIDEIVLVGGSTRIPKVQQLLKEFFNGKEP 355
Query: 2375 T-SIDPDKAVVFGAAIQA 2391
+ I+PD+AV +GAA+QA
Sbjct: 356 SRGINPDEAVAYGAAVQA 373
|
This subfamily includes human HSPA5 (also known as 70-kDa heat shock protein 5, glucose-regulated protein 78/GRP78, and immunoglobulin heavy chain-binding protein/BIP, MIF2; the gene encoding HSPA5 maps to 9q33.3.), Sacchaormyces cerevisiae Kar2p (also known as Grp78p), and related proteins. This subfamily belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. HSPA5 and Kar2p are chaperones of the endoplasmic reticulum (ER). Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Multiple ER DNAJ domain proteins have been identified and may exist in distinct complexes with HSPA5 in various locations in the ER, for example DNAJC3-p58IPK in the lumen. HSPA5-NEFs include SIL1 and an atypical HSP70 family protein HYOU1/ORP150. The ATPase activity of Kar2p is stimulated by the NEFs: Sil1p and Lhs1p. Length = 374 |
| >gnl|CDD|183087 PRK11325, PRK11325, scaffold protein; Provisional | Back alignment and domain information |
|---|
Score = 224 bits (574), Expect = 3e-68
Identities = 85/97 (87%), Positives = 91/97 (93%)
Query: 373 MSYSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKT 432
M+YSEKV+DHYENPRNVG F+KND VGTGMVGAPACGDVMKLQIKVN G+I DAKFKT
Sbjct: 1 MAYSEKVIDHYENPRNVGSFDKNDPNVGTGMVGAPACGDVMKLQIKVNDEGIIEDAKFKT 60
Query: 433 YGCGSAIASSSLVTEWVKGKTLDEAMSIKNTDIAEEL 469
YGCGSAIASSSLVTEWVKGKTLDEA++IKNTDIAEEL
Sbjct: 61 YGCGSAIASSSLVTEWVKGKTLDEALAIKNTDIAEEL 97
|
Length = 127 |
| >gnl|CDD|183087 PRK11325, PRK11325, scaffold protein; Provisional | Back alignment and domain information |
|---|
Score = 224 bits (574), Expect = 3e-68
Identities = 85/97 (87%), Positives = 91/97 (93%)
Query: 1769 MSYSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKT 1828
M+YSEKV+DHYENPRNVG F+KND VGTGMVGAPACGDVMKLQIKVN G+I DAKFKT
Sbjct: 1 MAYSEKVIDHYENPRNVGSFDKNDPNVGTGMVGAPACGDVMKLQIKVNDEGIIEDAKFKT 60
Query: 1829 YGCGSAIASSSLVTEWVKGKTLDEAMSIKNTDIAEEL 1865
YGCGSAIASSSLVTEWVKGKTLDEA++IKNTDIAEEL
Sbjct: 61 YGCGSAIASSSLVTEWVKGKTLDEALAIKNTDIAEEL 97
|
Length = 127 |
| >gnl|CDD|234640 PRK00110, PRK00110, hypothetical protein; Validated | Back alignment and domain information |
|---|
Score = 227 bits (581), Expect = 3e-67
Identities = 90/210 (42%), Positives = 131/210 (62%), Gaps = 12/210 (5%)
Query: 1206 DAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDANIPKNNIFRAIQKNNSNI 1264
DAKRGKI T+++RE+ VA G +P+ N +LRLAI+KA AN+PK+NI RAI+K
Sbjct: 18 DAKRGKIFTKLIREITVAAKLGGGDPEGNPRLRLAIDKAKAANMPKDNIERAIKKGTGE- 76
Query: 1265 KNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNKNGGNLSKEGSVLFMFK 1324
+ NY E+RYEGY G AIIV+ +T+NR RT + +R+ F+KNGGNL + GSV +MF
Sbjct: 77 -LDGANYEEIRYEGYGPGGVAIIVEALTDNRNRTAAEVRHAFSKNGGNLGETGSVSYMFD 135
Query: 1325 HCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPSKFIEIKNSLEMTGFKAE 1384
G ++ P ++ L++ ALE GAED D D +IT+P F ++++LE G +AE
Sbjct: 136 RKGVIVIEPLD-EDELMEAALEAGAEDVETD-DESFEVITAPEDFEAVRDALEAAGLEAE 193
Query: 1385 SSGIVMRPYTNIVFKDATTPIDPRVVDKMI 1414
S+ + M P T +D +K++
Sbjct: 194 SAEVTMIPQN-------TVELDEETAEKLL 216
|
Length = 245 |
| >gnl|CDD|212675 cd10233, HSPA1-2_6-8-like_NBD, Nucleotide-binding domain of HSPA1-A, -B, -L, HSPA-2, -6, -7, -8, and similar proteins | Back alignment and domain information |
|---|
Score = 231 bits (590), Expect = 1e-66
Identities = 141/378 (37%), Positives = 209/378 (55%), Gaps = 19/378 (5%)
Query: 639 SIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPK 698
+IGID GTT S V + ++ E++ + G PS V + ++ +G AK ++P
Sbjct: 1 AIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERL-IGDAAKNQVAMNPT 59
Query: 699 NTISSIKRFIARDLKNINTNS----FPYDFQNKFGMLHI----KTISGIKSPIEISAQIF 750
NT+ KR I R + S +P+ N G I K + P EIS+ +
Sbjct: 60 NTVFDAKRLIGRKFSDPVVQSDMKHWPFKVVNGGGKPPIIVEYKGETKTFYPEEISSMVL 119
Query: 751 ITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYK 810
+K+IAE + + AVITVPAYFND QRQ TK+A +AGLNVLR++NEPT+AAIAY
Sbjct: 120 TKMKEIAEAYLGKTVTNAVITVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYG 179
Query: 811 LDKNIF-EGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIV-- 867
LDK E ++DLGGGTFD+S+L ++G+F+V + GD++LGG+DFD L + V
Sbjct: 180 LDKKGGGERNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLVNHFVQE 239
Query: 868 -KNAFLKKLS--YKDVNILMIKSREIKELLS--YQSSVKLNVKLSDKKIVNITIDMKQFF 922
K K +S + + L K LS Q+S++++ L + +I +F
Sbjct: 240 FKRKHKKDISGNKRALRRLRTACERAKRTLSSSTQASIEID-SLFEGIDFYTSITRARFE 298
Query: 923 TITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFK-TTLLTSI 981
+ L T+ K L DA L I++++LVGGSTR+ + + + +FF L SI
Sbjct: 299 ELCADLFRGTLEPVEKVLRDAKLDKSQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSI 358
Query: 982 DPDKAVVFGAAIQANFLS 999
+PD+AV +GAA+QA LS
Sbjct: 359 NPDEAVAYGAAVQAAILS 376
|
This subfamily includes human HSPA1A (70-kDa heat shock protein 1A, also known as HSP72; HSPA1; HSP70I; HSPA1B; HSP70-1; HSP70-1A), HSPA1B (70-kDa heat shock protein 1B, also known as HSPA1A; HSP70-2; HSP70-1B), and HSPA1L (70-kDa heat shock protein 1-like, also known as HSP70T; hum70t; HSP70-1L; HSP70-HOM). The genes for these three HSPA1 proteins map in close proximity on the major histocompatibility complex (MHC) class III region on chromosome 6, 6p21.3. This subfamily also includes human HSPA8 (heat shock 70kDa protein 8, also known as LAP1; HSC54; HSC70; HSC71; HSP71; HSP73; NIP71; HSPA10; the HSPA8 gene maps to 11q24.1), human HSPA2 (70-kDa heat shock protein 2, also known as HSP70-2; HSP70-3, the HSPA2 gene maps to 14q24.1), human HSPA6 (also known as heat shock 70kDa protein 6 (HSP70B') gi 94717614, the HSPA6 gene maps to 1q23.3), human HSPA7 (heat shock 70kDa protein 7 , also known as HSP70B; the HSPA7 gene maps to 1q23.3) and Saccharmoyces cerevisiae Stress-Seventy subfamily B/Ssb1p. This subfamily belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Associations of polymorphisms within the MHC-III HSP70 gene locus with longevity, systemic lupus erythematosus, Meniere's disease, noise-induced hearing loss, high-altitude pulmonary edema, and coronary heart disease, have been found. HSPA2 is involved in cancer cell survival, is required for maturation of male gametophytes, and is linked to male infertility. The induction of HSPA6 is a biomarker of cellular stress. HSPA8 participates in the folding and trafficking of client proteins to different subcellular compartments, and in the signal transduction and apoptosis process; it has been shown to protect cardiomyocytes against oxidative stress partly through an interaction with alpha-enolase. S. cerevisiae Ssb1p, is part of the ribosome-associated complex (RAC), it acts as a chaperone for nascent polypeptides, and is important for translation fidelity; Ssb1p is also a [PSI+] prion-curing factor. Length = 376 |
| >gnl|CDD|212675 cd10233, HSPA1-2_6-8-like_NBD, Nucleotide-binding domain of HSPA1-A, -B, -L, HSPA-2, -6, -7, -8, and similar proteins | Back alignment and domain information |
|---|
Score = 231 bits (590), Expect = 1e-66
Identities = 141/378 (37%), Positives = 209/378 (55%), Gaps = 19/378 (5%)
Query: 2035 SIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPK 2094
+IGID GTT S V + ++ E++ + G PS V + ++ +G AK ++P
Sbjct: 1 AIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERL-IGDAAKNQVAMNPT 59
Query: 2095 NTISSIKRFIARDLKNINTNS----FPYDFQNKFGMLHI----KTISGIKSPIEISAQIF 2146
NT+ KR I R + S +P+ N G I K + P EIS+ +
Sbjct: 60 NTVFDAKRLIGRKFSDPVVQSDMKHWPFKVVNGGGKPPIIVEYKGETKTFYPEEISSMVL 119
Query: 2147 ITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYK 2206
+K+IAE + + AVITVPAYFND QRQ TK+A +AGLNVLR++NEPT+AAIAY
Sbjct: 120 TKMKEIAEAYLGKTVTNAVITVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYG 179
Query: 2207 LDKNIF-EGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIV-- 2263
LDK E ++DLGGGTFD+S+L ++G+F+V + GD++LGG+DFD L + V
Sbjct: 180 LDKKGGGERNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLVNHFVQE 239
Query: 2264 -KNAFLKKLS--YKDVNILMIKSREIKELLS--YQSSVKLNVKLSDKKIVNITIDMKQFF 2318
K K +S + + L K LS Q+S++++ L + +I +F
Sbjct: 240 FKRKHKKDISGNKRALRRLRTACERAKRTLSSSTQASIEID-SLFEGIDFYTSITRARFE 298
Query: 2319 TITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFK-TTLLTSI 2377
+ L T+ K L DA L I++++LVGGSTR+ + + + +FF L SI
Sbjct: 299 ELCADLFRGTLEPVEKVLRDAKLDKSQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSI 358
Query: 2378 DPDKAVVFGAAIQANFLS 2395
+PD+AV +GAA+QA LS
Sbjct: 359 NPDEAVAYGAAVQAAILS 376
|
This subfamily includes human HSPA1A (70-kDa heat shock protein 1A, also known as HSP72; HSPA1; HSP70I; HSPA1B; HSP70-1; HSP70-1A), HSPA1B (70-kDa heat shock protein 1B, also known as HSPA1A; HSP70-2; HSP70-1B), and HSPA1L (70-kDa heat shock protein 1-like, also known as HSP70T; hum70t; HSP70-1L; HSP70-HOM). The genes for these three HSPA1 proteins map in close proximity on the major histocompatibility complex (MHC) class III region on chromosome 6, 6p21.3. This subfamily also includes human HSPA8 (heat shock 70kDa protein 8, also known as LAP1; HSC54; HSC70; HSC71; HSP71; HSP73; NIP71; HSPA10; the HSPA8 gene maps to 11q24.1), human HSPA2 (70-kDa heat shock protein 2, also known as HSP70-2; HSP70-3, the HSPA2 gene maps to 14q24.1), human HSPA6 (also known as heat shock 70kDa protein 6 (HSP70B') gi 94717614, the HSPA6 gene maps to 1q23.3), human HSPA7 (heat shock 70kDa protein 7 , also known as HSP70B; the HSPA7 gene maps to 1q23.3) and Saccharmoyces cerevisiae Stress-Seventy subfamily B/Ssb1p. This subfamily belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Associations of polymorphisms within the MHC-III HSP70 gene locus with longevity, systemic lupus erythematosus, Meniere's disease, noise-induced hearing loss, high-altitude pulmonary edema, and coronary heart disease, have been found. HSPA2 is involved in cancer cell survival, is required for maturation of male gametophytes, and is linked to male infertility. The induction of HSPA6 is a biomarker of cellular stress. HSPA8 participates in the folding and trafficking of client proteins to different subcellular compartments, and in the signal transduction and apoptosis process; it has been shown to protect cardiomyocytes against oxidative stress partly through an interaction with alpha-enolase. S. cerevisiae Ssb1p, is part of the ribosome-associated complex (RAC), it acts as a chaperone for nascent polypeptides, and is important for translation fidelity; Ssb1p is also a [PSI+] prion-curing factor. Length = 376 |
| >gnl|CDD|216656 pfam01709, Transcrip_reg, Transcriptional regulator | Back alignment and domain information |
|---|
Score = 215 bits (549), Expect = 5e-63
Identities = 93/210 (44%), Positives = 132/210 (62%), Gaps = 12/210 (5%)
Query: 1206 DAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDANIPKNNIFRAIQKNNSNI 1264
DAKRGKI T++ +E+ VA G +P+ N +LRLAIEKA AN+PK+NI RAI+K +
Sbjct: 14 DAKRGKIFTKLGKEITVAAKMGGPDPEGNPRLRLAIEKAKAANMPKDNIERAIKKGSG-- 71
Query: 1265 KNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNKNGGNLSKEGSVLFMFK 1324
+ NY E+RYEGY G AIIV+C+T+NR RT +++R+ F+KNGGNL + GSV +MF
Sbjct: 72 GLDGENYEEIRYEGYGPGGVAIIVECLTDNRNRTAADVRHAFSKNGGNLGETGSVSYMFD 131
Query: 1325 HCGQLLF-LPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPSKFIEIKNSLEMTGFKA 1383
G ++F ++ LL+ ALE GAED ++D I +IT P+ F +K +LE G +
Sbjct: 132 RKGVIVFEKEGVDEDELLEAALEAGAEDV-EEEDGSIEVITDPTDFEAVKKALEEAGLEI 190
Query: 1384 ESSGIVMRPYTNIVFKDATTPIDPRVVDKM 1413
ES+ I M P T +D +K+
Sbjct: 191 ESAEITMIPQN-------TVELDEEDAEKL 213
|
This is a family of transcriptional regulators. In mammals, it activates the transcription of mitochondrially-encoded COX1. In bacteria, it negatively regulates the quorum-sensing response regulator by binding to its promoter region. Length = 234 |
| >gnl|CDD|212679 cd10237, HSPA13-like_NBD, Nucleotide-binding domain of human HSPA13 and similar proteins | Back alignment and domain information |
|---|
Score = 218 bits (558), Expect = 6e-62
Identities = 126/384 (32%), Positives = 199/384 (51%), Gaps = 26/384 (6%)
Query: 640 IGIDFGTTNSLVAIVR--NNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDP 697
IGID GTT S V + + +++ D+ G IPS+V + P + VG KA +P
Sbjct: 23 IGIDLGTTYSSVGVYQAGTGETDIIPDENGRKSIPSVVAFTPGT-VLVGYKAVEQAEHNP 81
Query: 698 KNTISSIKRFIARDL------KNINTNSFPYDFQNKFGMLHIK-TISGIK--SPIEISAQ 748
+NTI KRFI + + F ++ G + K +P EI ++
Sbjct: 82 QNTIYDAKRFIGKIFTKEELEFESDRYRFKVKINSRNGAFFFSVLTNETKTVTPEEIGSR 141
Query: 749 IFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIA 808
+ + L+K+AE + + AVI+VPA F++ QR T AA LAGL VLR++NEPT+AA+A
Sbjct: 142 LILKLRKMAEKYLGTPVGKAVISVPAEFDEKQRNATVKAANLAGLEVLRVINEPTAAALA 201
Query: 809 YKLDKNIFEGIF--AVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWI 866
Y L K + +F V DLGGGT D+S+L + G+F ++ G++ LGG DF+ L ++
Sbjct: 202 YGLHKK--QDVFNVLVVDLGGGTLDVSLLNKQGGMFLTRAMAGNNRLGGQDFNQRLLQYL 259
Query: 867 ---VKNAFLKKLSYK-DVNILMIKSREIKELLSYQSSVKLNVKL----SDKKIV--NITI 916
+ + K K D+ L K L+ S +++ L + IV +
Sbjct: 260 YQKIYEKYGKVPDNKEDIQRLRQAVEAAKINLTLHPSTTISLNLTLLSEGESIVKFEYEL 319
Query: 917 DMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTT 976
+F T+ + L + +L L + +L ++++ ++LVGGSTR+ I + + FF
Sbjct: 320 TRDEFETLNEDLFQKILLPIEAVLAEGHLDKEEVDEIVLVGGSTRIPRIRQVIGRFFGKD 379
Query: 977 LLTSIDPDKAVVFGAAIQANFLSG 1000
TS+DP+ AVV G AIQA + G
Sbjct: 380 PNTSVDPELAVVTGVAIQAGIIGG 403
|
Human HSPA13 (also called 70-kDa heat shock protein 13, STCH, "stress 70 protein chaperone, microsome-associated, 60kD", "stress 70 protein chaperone, microsome-associated, 60kDa"; the gene encoding HSPA13 maps to 21q11.1) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). STCH contains an NBD but lacks an SBD. STCH may function to regulate cell proliferation and survival, and modulate the TRAIL-mediated cell death pathway. The HSPA13 gene is a candidate stomach cancer susceptibility gene; a mutation in the NBD coding region of HSPA13 has been identified in stomach cancer cells. The NBD of HSPA13 interacts with the ubiquitin-like proteins Chap1 and Chap2, implicating HSPA13 in regulating cell cycle and cell death events. HSPA13 is induced by the Ca2+ ionophore A23187. Length = 417 |
| >gnl|CDD|212679 cd10237, HSPA13-like_NBD, Nucleotide-binding domain of human HSPA13 and similar proteins | Back alignment and domain information |
|---|
Score = 218 bits (558), Expect = 6e-62
Identities = 126/384 (32%), Positives = 199/384 (51%), Gaps = 26/384 (6%)
Query: 2036 IGIDFGTTNSLVAIVR--NNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDP 2093
IGID GTT S V + + +++ D+ G IPS+V + P + VG KA +P
Sbjct: 23 IGIDLGTTYSSVGVYQAGTGETDIIPDENGRKSIPSVVAFTPGT-VLVGYKAVEQAEHNP 81
Query: 2094 KNTISSIKRFIARDL------KNINTNSFPYDFQNKFGMLHIK-TISGIK--SPIEISAQ 2144
+NTI KRFI + + F ++ G + K +P EI ++
Sbjct: 82 QNTIYDAKRFIGKIFTKEELEFESDRYRFKVKINSRNGAFFFSVLTNETKTVTPEEIGSR 141
Query: 2145 IFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIA 2204
+ + L+K+AE + + AVI+VPA F++ QR T AA LAGL VLR++NEPT+AA+A
Sbjct: 142 LILKLRKMAEKYLGTPVGKAVISVPAEFDEKQRNATVKAANLAGLEVLRVINEPTAAALA 201
Query: 2205 YKLDKNIFEGIF--AVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWI 2262
Y L K + +F V DLGGGT D+S+L + G+F ++ G++ LGG DF+ L ++
Sbjct: 202 YGLHKK--QDVFNVLVVDLGGGTLDVSLLNKQGGMFLTRAMAGNNRLGGQDFNQRLLQYL 259
Query: 2263 ---VKNAFLKKLSYK-DVNILMIKSREIKELLSYQSSVKLNVKL----SDKKIV--NITI 2312
+ + K K D+ L K L+ S +++ L + IV +
Sbjct: 260 YQKIYEKYGKVPDNKEDIQRLRQAVEAAKINLTLHPSTTISLNLTLLSEGESIVKFEYEL 319
Query: 2313 DMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTT 2372
+F T+ + L + +L L + +L ++++ ++LVGGSTR+ I + + FF
Sbjct: 320 TRDEFETLNEDLFQKILLPIEAVLAEGHLDKEEVDEIVLVGGSTRIPRIRQVIGRFFGKD 379
Query: 2373 LLTSIDPDKAVVFGAAIQANFLSG 2396
TS+DP+ AVV G AIQA + G
Sbjct: 380 PNTSVDPELAVVTGVAIQAGIIGG 403
|
Human HSPA13 (also called 70-kDa heat shock protein 13, STCH, "stress 70 protein chaperone, microsome-associated, 60kD", "stress 70 protein chaperone, microsome-associated, 60kDa"; the gene encoding HSPA13 maps to 21q11.1) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). STCH contains an NBD but lacks an SBD. STCH may function to regulate cell proliferation and survival, and modulate the TRAIL-mediated cell death pathway. The HSPA13 gene is a candidate stomach cancer susceptibility gene; a mutation in the NBD coding region of HSPA13 has been identified in stomach cancer cells. The NBD of HSPA13 interacts with the ubiquitin-like proteins Chap1 and Chap2, implicating HSPA13 in regulating cell cycle and cell death events. HSPA13 is induced by the Ca2+ ionophore A23187. Length = 417 |
| >gnl|CDD|223295 COG0217, COG0217, Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Score = 203 bits (519), Expect = 5e-59
Identities = 87/199 (43%), Positives = 127/199 (63%), Gaps = 5/199 (2%)
Query: 1206 DAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDANIPKNNIFRAIQKNNSNI 1264
DAKR KI T++++E+ VA G +P++N +LR AIEKA AN+PK+NI RAI+K +
Sbjct: 18 DAKRSKIFTKLIKEITVAAKQGGPDPESNPRLRTAIEKAKAANMPKDNIERAIKKASGG- 76
Query: 1265 KNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNKNGGNLSKEGSVLFMFK 1324
+ NY E+RYEGY G AIIV+ +T+NR RT SN+R+ FNKNGGNL + GSV +MF
Sbjct: 77 -KDGANYEEIRYEGYGPGGVAIIVEALTDNRNRTASNVRSAFNKNGGNLGEPGSVSYMFD 135
Query: 1325 HCGQLLFLPNTK-KNTLLDLALEKGAEDFLIDKDNKITIITSPSKFIEIKNSLEMTGFKA 1383
G ++ N ++ LL+ A+E GAED + + + I + T P F ++K +LE G++
Sbjct: 136 RKGVIVVEKNEIDEDELLEAAIEAGAED-VEEDEGSIEVYTEPEDFNKVKEALEAAGYEI 194
Query: 1384 ESSGIVMRPYTNIVFKDAT 1402
ES+ + M P + D
Sbjct: 195 ESAELTMIPQNTVELDDED 213
|
Length = 241 |
| >gnl|CDD|223594 COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 202 bits (517), Expect = 1e-56
Identities = 113/392 (28%), Positives = 174/392 (44%), Gaps = 42/392 (10%)
Query: 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPR- 59
+D +AT+ V+D + Y R N H A E AR VA+ + AD
Sbjct: 26 LDNAATSQKPQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFLNADSSD 85
Query: 60 EIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLEND-GFRVTYLKP 118
EI++T G TE+ NL +G K G I+ EH S + ++L G +V +
Sbjct: 86 EIVFTRGTTEALNLVARGLGR-SLKPGDEIVVSDLEHHSNIVPWQELAKRTGAKVRVIPL 144
Query: 119 KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVG 178
++GL+ L LE+ I T LV++ V+N G + P+ EI EL G + DAAQA G
Sbjct: 145 DDDGLLDLDALEKLITPKTKLVALSHVSNVTGTVNPVKEIAELAHEHGALVLVDAAQAAG 204
Query: 179 KIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGH---------- 227
+ I++Q D ++FS HK + GP GIG LY+R+ +E + GGG
Sbjct: 205 HLPIDVQELGCDFLAFSGHKWLLGPTGIGVLYVRKELLEELEPFLGGGGMIEYVSRDEGV 264
Query: 228 -----EYGLRSGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEIY 281
+GT +G+ A L I M+ L + L GL + +
Sbjct: 265 TLAELPLRFEAGTPNIAGAIGLAAALDYLLEIGMEAIEAHERELTEYLLEGL-SELPGVE 323
Query: 282 ING-DMNNRIPHNLNISFNFIEGES-----LLMAIKDIAVSSGSACTSASLEPSYVLRAL 335
I G +R +SFN ++G L+ K IAV +G C + R L
Sbjct: 324 IYGPPDADRGG---IVSFN-VKGIHPHDVATLLDEKGIAVRAGHHCAQP------LHRLL 373
Query: 336 GCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK 367
G ++IR ++ + TE+++D ++ LK
Sbjct: 374 G-----VDATIRASLHLYNTEEDVDRLLEALK 400
|
Length = 405 |
| >gnl|CDD|188192 TIGR01999, iscU, FeS cluster assembly scaffold IscU | Back alignment and domain information |
|---|
Score = 189 bits (481), Expect = 1e-55
Identities = 73/95 (76%), Positives = 86/95 (90%)
Query: 375 YSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKTYG 434
YSEKV+DHYENPRNVG +K+D VGTG+VGAPACGDVMKLQIKVN +G+I DAKFKT+G
Sbjct: 1 YSEKVIDHYENPRNVGSLDKDDKNVGTGLVGAPACGDVMKLQIKVNDDGIIEDAKFKTFG 60
Query: 435 CGSAIASSSLVTEWVKGKTLDEAMSIKNTDIAEEL 469
CGSAIASSSL TE +KGK+L+EA+ IKNT+IA+EL
Sbjct: 61 CGSAIASSSLATELIKGKSLEEALKIKNTEIAKEL 95
|
This model represents IscU, a homolog of the N-terminal region of NifU, an Fe-S cluster assembly protein found mostly in nitrogen-fixing bacteria. IscU is considered part of the IscSUA-hscAB-fdx system of Fe-S assembly, whereas NifU is found in nitrogenase-containing (nitrogen-fixing) species. A NifU-type protein is also found in Helicobacter and Campylobacter. IscU and NifU are considered scaffold proteins on which Fe-S clusters are assembled before transfer to apoproteins. This model excludes true NifU proteins as in Klebsiella pneumoniae and Anabaena sp. as well as archaeal homologs. It includes largely proteobacterial and eukaryotic forms [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 124 |
| >gnl|CDD|188192 TIGR01999, iscU, FeS cluster assembly scaffold IscU | Back alignment and domain information |
|---|
Score = 189 bits (481), Expect = 1e-55
Identities = 73/95 (76%), Positives = 86/95 (90%)
Query: 1771 YSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKTYG 1830
YSEKV+DHYENPRNVG +K+D VGTG+VGAPACGDVMKLQIKVN +G+I DAKFKT+G
Sbjct: 1 YSEKVIDHYENPRNVGSLDKDDKNVGTGLVGAPACGDVMKLQIKVNDDGIIEDAKFKTFG 60
Query: 1831 CGSAIASSSLVTEWVKGKTLDEAMSIKNTDIAEEL 1865
CGSAIASSSL TE +KGK+L+EA+ IKNT+IA+EL
Sbjct: 61 CGSAIASSSLATELIKGKSLEEALKIKNTEIAKEL 95
|
This model represents IscU, a homolog of the N-terminal region of NifU, an Fe-S cluster assembly protein found mostly in nitrogen-fixing bacteria. IscU is considered part of the IscSUA-hscAB-fdx system of Fe-S assembly, whereas NifU is found in nitrogenase-containing (nitrogen-fixing) species. A NifU-type protein is also found in Helicobacter and Campylobacter. IscU and NifU are considered scaffold proteins on which Fe-S clusters are assembled before transfer to apoproteins. This model excludes true NifU proteins as in Klebsiella pneumoniae and Anabaena sp. as well as archaeal homologs. It includes largely proteobacterial and eukaryotic forms [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 124 |
| >gnl|CDD|223594 COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 198 bits (506), Expect = 4e-55
Identities = 112/388 (28%), Positives = 171/388 (44%), Gaps = 42/388 (10%)
Query: 1401 ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPR-EIIW 1459
AT+ V+D + Y R N H A E AR VA+ + AD EI++
Sbjct: 30 ATSQKPQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFLNADSSDEIVF 89
Query: 1460 TSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLEND-GFRVTYLKPKNNG 1518
T G TE+ NL +G K G I+ EH S + ++L G +V + ++G
Sbjct: 90 TRGTTEALNLVARGLGR-SLKPGDEIVVSDLEHHSNIVPWQELAKRTGAKVRVIPLDDDG 148
Query: 1519 LITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDI 1578
L+ L LE+ I T LV++ V+N G + P+ EI EL G + DAAQA G + I
Sbjct: 149 LLDLDALEKLITPKTKLVALSHVSNVTGTVNPVKEIAELAHEHGALVLVDAAQAAGHLPI 208
Query: 1579 NIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGH-------------- 1623
++Q D ++FS HK + GP GIG LY+R+ +E + GGG
Sbjct: 209 DVQELGCDFLAFSGHKWLLGPTGIGVLYVRKELLEELEPFLGGGGMIEYVSRDEGVTLAE 268
Query: 1624 -EYGLRSGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEIYING- 1680
+GT +G+ A L I M+ L + L GL + + I G
Sbjct: 269 LPLRFEAGTPNIAGAIGLAAALDYLLEIGMEAIEAHERELTEYLLEGL-SELPGVEIYGP 327
Query: 1681 DMNNRIPHNLNISFNFIEGES-----LLMAIKDIAVSSGSACTSASLEPSYVLRALGCND 1735
+R +SFN ++G L+ K IAV +G C + R LG
Sbjct: 328 PDADRGG---IVSFN-VKGIHPHDVATLLDEKGIAVRAGHHCAQP------LHRLLG--- 374
Query: 1736 ELAHSSIRFTIGRFTTEKEIDFTIKLLK 1763
++IR ++ + TE+++D ++ LK
Sbjct: 375 --VDATIRASLHLYNTEEDVDRLLEALK 400
|
Length = 405 |
| >gnl|CDD|212670 cd10228, HSPA4_like_NDB, Nucleotide-binding domain of 105/110 kDa heat shock proteins including HSPA4 and similar proteins | Back alignment and domain information |
|---|
Score = 195 bits (497), Expect = 3e-54
Identities = 130/391 (33%), Positives = 201/391 (51%), Gaps = 43/391 (10%)
Query: 640 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 699
+GIDFG NS+VA+ R +V+ ++Y PS+V + + +G+ AK + KN
Sbjct: 3 VGIDFGNLNSVVAVARKGGIDVVANEYSNRETPSLVSFGEKQR-LIGEAAKNQAISNFKN 61
Query: 700 TISSIKRFIARDLKN----INTNSFPYDFQ---NKFGMLHIKTISGIK--SPIEISAQIF 750
T+ + KR I R + P+ + + + + K SP ++ A +
Sbjct: 62 TVRNFKRLIGRKFDDPEVQKELKFLPFKVVELPDGKVGIKVNYLGEEKVFSPEQVLAMLL 121
Query: 751 ITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYK 810
LK+IAE A+ ++ VI+VP+YF D QR+ +AA++AGLN LRL+NE T+ A+AY
Sbjct: 122 TKLKEIAEKALKGKVTDCVISVPSYFTDAQRRALLDAAQIAGLNCLRLMNETTATALAY- 180
Query: 811 LDKNIFEGIF-------------AVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDD 857
GI+ A D+G + +SI+ F G KVLS D NLGG D
Sbjct: 181 -------GIYKTDLPEEEKPRNVAFVDIGHSSTQVSIVAFNKGKLKVLSTAFDRNLGGRD 233
Query: 858 FDYCLFSWIVKNAFLKKLSYK-DVNI-------LMIKSREIKELLSYQSSVKLNVK-LSD 908
FD LF K F +K YK DV L+ ++K++LS + LN++ L +
Sbjct: 234 FDEALFEHFAKE-FKEK--YKIDVLSNPKARLRLLAACEKLKKVLSANTEAPLNIECLME 290
Query: 909 KKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEG 968
K V+ I ++F + L+ R KAL +A LT +DI++V +VGGSTR+ + E
Sbjct: 291 DKDVSGKIKREEFEELCAPLLERVEEPLEKALAEAGLTKEDIHSVEIVGGSTRIPAVKEL 350
Query: 969 VSNFFKTTLLTSIDPDKAVVFGAAIQANFLS 999
++ F L T+++ D+AV G A+Q LS
Sbjct: 351 IAKVFGKELSTTLNADEAVARGCALQCAMLS 381
|
This subgroup includes the human proteins, HSPA4 (also known as 70-kDa heat shock protein 4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps to 5q31.1), HSPA4L (also known as 70-kDa heat shock protein 4-like, APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to 4q28), and HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3), Saccharomyces cerevisiae Sse1p and Sse2p, and a sea urchin sperm receptor. It belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family, and includes proteins believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 381 |
| >gnl|CDD|212670 cd10228, HSPA4_like_NDB, Nucleotide-binding domain of 105/110 kDa heat shock proteins including HSPA4 and similar proteins | Back alignment and domain information |
|---|
Score = 195 bits (497), Expect = 3e-54
Identities = 130/391 (33%), Positives = 201/391 (51%), Gaps = 43/391 (10%)
Query: 2036 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 2095
+GIDFG NS+VA+ R +V+ ++Y PS+V + + +G+ AK + KN
Sbjct: 3 VGIDFGNLNSVVAVARKGGIDVVANEYSNRETPSLVSFGEKQR-LIGEAAKNQAISNFKN 61
Query: 2096 TISSIKRFIARDLKN----INTNSFPYDFQ---NKFGMLHIKTISGIK--SPIEISAQIF 2146
T+ + KR I R + P+ + + + + K SP ++ A +
Sbjct: 62 TVRNFKRLIGRKFDDPEVQKELKFLPFKVVELPDGKVGIKVNYLGEEKVFSPEQVLAMLL 121
Query: 2147 ITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYK 2206
LK+IAE A+ ++ VI+VP+YF D QR+ +AA++AGLN LRL+NE T+ A+AY
Sbjct: 122 TKLKEIAEKALKGKVTDCVISVPSYFTDAQRRALLDAAQIAGLNCLRLMNETTATALAY- 180
Query: 2207 LDKNIFEGIF-------------AVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDD 2253
GI+ A D+G + +SI+ F G KVLS D NLGG D
Sbjct: 181 -------GIYKTDLPEEEKPRNVAFVDIGHSSTQVSIVAFNKGKLKVLSTAFDRNLGGRD 233
Query: 2254 FDYCLFSWIVKNAFLKKLSYK-DVNI-------LMIKSREIKELLSYQSSVKLNVK-LSD 2304
FD LF K F +K YK DV L+ ++K++LS + LN++ L +
Sbjct: 234 FDEALFEHFAKE-FKEK--YKIDVLSNPKARLRLLAACEKLKKVLSANTEAPLNIECLME 290
Query: 2305 KKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEG 2364
K V+ I ++F + L+ R KAL +A LT +DI++V +VGGSTR+ + E
Sbjct: 291 DKDVSGKIKREEFEELCAPLLERVEEPLEKALAEAGLTKEDIHSVEIVGGSTRIPAVKEL 350
Query: 2365 VSNFFKTTLLTSIDPDKAVVFGAAIQANFLS 2395
++ F L T+++ D+AV G A+Q LS
Sbjct: 351 IAKVFGKELSTTLNADEAVARGCALQCAMLS 381
|
This subgroup includes the human proteins, HSPA4 (also known as 70-kDa heat shock protein 4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps to 5q31.1), HSPA4L (also known as 70-kDa heat shock protein 4-like, APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to 4q28), and HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3), Saccharomyces cerevisiae Sse1p and Sse2p, and a sea urchin sperm receptor. It belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family, and includes proteins believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 381 |
| >gnl|CDD|99746 cd06453, SufS_like, Cysteine desulfurase (SufS)-like | Back alignment and domain information |
|---|
Score = 193 bits (494), Expect = 8e-54
Identities = 112/387 (28%), Positives = 171/387 (44%), Gaps = 39/387 (10%)
Query: 2 DYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-DPRE 60
D +AT+ V+D ++ Y R N H A A E AR +VA+ I A P E
Sbjct: 4 DNAATSQKPQPVIDAIVDYYRHYNANVHRGVHELSARATDAYEAAREKVARFINAPSPDE 63
Query: 61 IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLEND-GFRVTYLKPK 119
II+T TE+ NL G K G I+T EH S + ++L G ++ +
Sbjct: 64 IIFTRNTTEAINLVAYGLG-RANKPGDEIVTSVMEHHSNIVPWQQLAERTGAKLKVVPVD 122
Query: 120 NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGK 179
++G + L LE+ + T LV+V V+N +G I P+ EIGE+ GV D AQ+ G
Sbjct: 123 DDGQLDLEALEKLLTERTKLVAVTHVSNVLGTINPVKEIGEIAHEAGVPVLVDGAQSAGH 182
Query: 180 IDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGH--------EYGL 231
+ +++Q+ D ++FS HK+ GP GIG LY + + GGG E
Sbjct: 183 MPVDVQDLGCDFLAFSGHKMLGPTGIGVLYGKEELLEEMP-PYGGGGEMIEEVSFEETTY 241
Query: 232 R-------SGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEIYIN 283
+GT +G+G A L +I M+ L L I + +
Sbjct: 242 ADLPHKFEAGTPNIAGAIGLGAAIDYLEKIGMEAIAAHEHELTAYALERL-SEIPGVRVY 300
Query: 284 GDMNNRIPHNLNISFNF--IEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCND 339
GD +R +SFN I + + IAV +G C +P ++R LG
Sbjct: 301 GDAEDRAG---VVSFNLEGIHPHDVATILDQYGIAVRAGHHCA----QP--LMRRLG--- 348
Query: 340 ELAHSSIRFTIGRFTTEKEIDFTIKLL 366
++R + G + TE+EID ++ L
Sbjct: 349 --VPGTVRASFGLYNTEEEIDALVEAL 373
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. Length = 373 |
| >gnl|CDD|99746 cd06453, SufS_like, Cysteine desulfurase (SufS)-like | Back alignment and domain information |
|---|
Score = 193 bits (493), Expect = 1e-53
Identities = 111/384 (28%), Positives = 169/384 (44%), Gaps = 39/384 (10%)
Query: 1401 ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-DPREIIW 1459
AT+ V+D ++ Y R N H A A E AR +VA+ I A P EII+
Sbjct: 7 ATSQKPQPVIDAIVDYYRHYNANVHRGVHELSARATDAYEAAREKVARFINAPSPDEIIF 66
Query: 1460 TSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLEND-GFRVTYLKPKNNG 1518
T TE+ NL G K G I+T EH S + ++L G ++ + ++G
Sbjct: 67 TRNTTEAINLVAYGLG-RANKPGDEIVTSVMEHHSNIVPWQQLAERTGAKLKVVPVDDDG 125
Query: 1519 LITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDI 1578
+ L LE+ + T LV+V V+N +G I P+ EIGE+ GV D AQ+ G + +
Sbjct: 126 QLDLEALEKLLTERTKLVAVTHVSNVLGTINPVKEIGEIAHEAGVPVLVDGAQSAGHMPV 185
Query: 1579 NIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGH--------EYGLR-- 1628
++Q+ D ++FS HK+ GP GIG LY + + GGG E
Sbjct: 186 DVQDLGCDFLAFSGHKMLGPTGIGVLYGKEELLEEMP-PYGGGGEMIEEVSFEETTYADL 244
Query: 1629 -----SGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDM 1682
+GT +G+G A L +I M+ L L I + + GD
Sbjct: 245 PHKFEAGTPNIAGAIGLGAAIDYLEKIGMEAIAAHEHELTAYALERL-SEIPGVRVYGDA 303
Query: 1683 NNRIPHNLNISFNF--IEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELA 1738
+R +SFN I + + IAV +G C +P ++R LG
Sbjct: 304 EDRAG---VVSFNLEGIHPHDVATILDQYGIAVRAGHHCA----QP--LMRRLG-----V 349
Query: 1739 HSSIRFTIGRFTTEKEIDFTIKLL 1762
++R + G + TE+EID ++ L
Sbjct: 350 PGTVRASFGLYNTEEEIDALVEAL 373
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. Length = 373 |
| >gnl|CDD|233240 TIGR01033, TIGR01033, DNA-binding regulatory protein, YebC/PmpR family | Back alignment and domain information |
|---|
Score = 182 bits (463), Expect = 1e-51
Identities = 84/193 (43%), Positives = 125/193 (64%), Gaps = 5/193 (2%)
Query: 1206 DAKRGKICTRIMRELRVAINFG-NNPDTNIKLRLAIEKALDANIPKNNIFRAIQKNNSNI 1264
DAKRGKI T++++E+ VA G +P++N +LR AIEKA AN+PK+NI RAI+K
Sbjct: 18 DAKRGKIFTKLIKEIIVAAKLGGGDPESNPRLRTAIEKAKAANMPKDNIERAIKKGAG-- 75
Query: 1265 KNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNKNGGNLSKEGSVLFMFK 1324
+ + NY E+ YEGY+ G AIIV+C+T+N+ RT S +R+ FNKNGG+L + GSV ++F
Sbjct: 76 ELDGSNYEEITYEGYAPGGVAIIVECLTDNKNRTASEVRSAFNKNGGSLGEPGSVSYLFS 135
Query: 1325 HCGQLLFLPNTKK-NTLLDLALEKGAEDFLIDKDNKITIITSPSKFIEIKNSLEMTGFKA 1383
G + N L++ A+E GAED + D++ + T+P + ++K +LE GF
Sbjct: 136 RKGVIEVPKNEVDEEDLMEAAIEAGAED-IDVDDDEFEVYTAPEELEKVKEALEAKGFPI 194
Query: 1384 ESSGIVMRPYTNI 1396
ES+ I M P T +
Sbjct: 195 ESAEITMIPLTTV 207
|
This model describes a minimally characterized protein family, restricted to bacteria excepting for some eukaryotic sequences that have possible transit peptides. YebC from E. coli is crystallized, and PA0964 from Pseudomonas aeruginosa has been shown to be a sequence-specific DNA-binding regulatory protein [Regulatory functions, DNA interactions]. Length = 238 |
| >gnl|CDD|237084 PRK12378, PRK12378, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 173 bits (441), Expect = 2e-48
Identities = 76/205 (37%), Positives = 116/205 (56%), Gaps = 6/205 (2%)
Query: 1194 AWGLEENSRLSFDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDANIPKNN 1252
AW + + D + KI ++ +E+ VA G +P++N LR IE+A AN+PK+
Sbjct: 4 AWENIKAKKAKKDGAKSKIFAKLGKEIYVAAKQGGPDPESNPALRFVIERAKKANVPKDV 63
Query: 1253 IFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNKNGGN 1312
I RAI+K +Y EVRYEG+ NG +IV+C+T+N RTV+N+R+ FNKNGGN
Sbjct: 64 IERAIKKAKGG---GGEDYEEVRYEGFGPNGVMVIVECLTDNVNRTVANVRSAFNKNGGN 120
Query: 1313 LSKEGSVLFMFKHCGQLLFLPNTKKNTLLDL-ALEKGAEDFLIDKDNKITIITSPSKFIE 1371
L GSV FMF H G +F + + L L + ED + +++ IT+ T P+ F +
Sbjct: 121 LGTSGSVAFMFDHKGVFVFEGDDEDELLEALIDADVDVED-VEEEEGTITVYTDPTDFHK 179
Query: 1372 IKNSLEMTGFKAESSGIVMRPYTNI 1396
+K +LE G + + + M P +
Sbjct: 180 VKKALEAAGIEFLVAELEMIPQNPV 204
|
Length = 235 |
| >gnl|CDD|212680 cd10238, HSPA14-like_NBD, Nucleotide-binding domain of human HSPA14 and similar proteins | Back alignment and domain information |
|---|
Score = 176 bits (447), Expect = 1e-47
Identities = 112/375 (29%), Positives = 193/375 (51%), Gaps = 20/375 (5%)
Query: 639 SIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPK 698
+IG+ FG T++ +A+ ++ +V+ + G + P++V + I VG AK + +
Sbjct: 2 AIGVHFGNTSACLAVYKDGRADVVANDAGDRVTPAVVAFTDTEVI-VGLAAKQGRIRNAA 60
Query: 699 NTISSIKRFIAR----DLKNINTNSFPYDFQNKFGMLHIKTISGIK----SPIEISAQIF 750
NTI K+ + R K K G + + K SP E++ IF
Sbjct: 61 NTIVKNKQILGRSYSDPFKQKEKTESSCKIIEKDGEPKYEIFTEEKTKHVSPKEVAKLIF 120
Query: 751 ITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYK 810
+K+IA++A+ + VITVP YF++ Q+ + AA+ AG NVLR+++EP++AA+AY
Sbjct: 121 KKMKEIAQSALGSDSKDVVITVPVYFSEKQKLALREAAEEAGFNVLRIIHEPSAAALAYG 180
Query: 811 LDKNIFEG--IFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVK 868
+ ++ G VY LGG + D++IL+ +G+++VL+ D NLGG+ F S +
Sbjct: 181 IGQDSPTGKSYVLVYRLGGTSTDVTILRVNSGMYRVLATSTDDNLGGESFT-ETLSQYLA 239
Query: 869 NAFLKKL------SYKDVNILMIKSREIKELLSYQSSVKLNVK-LSDKKIVNITIDMKQF 921
N F +K + + + L + K++LS S V+ L + ++ +F
Sbjct: 240 NEFKRKWKQDVRGNARAMMKLNNAAEVAKQILSTLPSANCFVESLYEGIDFQCSVSRARF 299
Query: 922 FTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTT-LLTS 980
++ L + + K L ANLT DIN V+L GGS+R+ + + + + F + +L S
Sbjct: 300 ESLCSSLFPKCLEPIEKVLEQANLTKTDINKVVLCGGSSRIPKLQQLIKDLFPSVEVLNS 359
Query: 981 IDPDKAVVFGAAIQA 995
I PD+ + GAA QA
Sbjct: 360 ISPDEVIAIGAAKQA 374
|
Human HSPA14 (also known as 70-kDa heat shock protein 14, HSP70L1, HSP70-4; the gene encoding HSPA14 maps to 10p13), is ribosome-associated and belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). HSPA14 interacts with the J-protein MPP11 to form the mammalian ribosome-associated complex (mRAC). HSPA14 participates in a pathway along with Nijmegen breakage syndrome 1 (NBS1, also known as p85 or nibrin), heat shock transcription factor 4b (HSF4b), and HSPA4 (belonging to a different subfamily), that induces tumor migration, invasion, and transformation. HSPA14 is a potent T helper cell (Th1) polarizing adjuvant that contributes to antitumor immune responses. Length = 375 |
| >gnl|CDD|212680 cd10238, HSPA14-like_NBD, Nucleotide-binding domain of human HSPA14 and similar proteins | Back alignment and domain information |
|---|
Score = 176 bits (447), Expect = 1e-47
Identities = 112/375 (29%), Positives = 193/375 (51%), Gaps = 20/375 (5%)
Query: 2035 SIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPK 2094
+IG+ FG T++ +A+ ++ +V+ + G + P++V + I VG AK + +
Sbjct: 2 AIGVHFGNTSACLAVYKDGRADVVANDAGDRVTPAVVAFTDTEVI-VGLAAKQGRIRNAA 60
Query: 2095 NTISSIKRFIAR----DLKNINTNSFPYDFQNKFGMLHIKTISGIK----SPIEISAQIF 2146
NTI K+ + R K K G + + K SP E++ IF
Sbjct: 61 NTIVKNKQILGRSYSDPFKQKEKTESSCKIIEKDGEPKYEIFTEEKTKHVSPKEVAKLIF 120
Query: 2147 ITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYK 2206
+K+IA++A+ + VITVP YF++ Q+ + AA+ AG NVLR+++EP++AA+AY
Sbjct: 121 KKMKEIAQSALGSDSKDVVITVPVYFSEKQKLALREAAEEAGFNVLRIIHEPSAAALAYG 180
Query: 2207 LDKNIFEG--IFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVK 2264
+ ++ G VY LGG + D++IL+ +G+++VL+ D NLGG+ F S +
Sbjct: 181 IGQDSPTGKSYVLVYRLGGTSTDVTILRVNSGMYRVLATSTDDNLGGESFT-ETLSQYLA 239
Query: 2265 NAFLKKL------SYKDVNILMIKSREIKELLSYQSSVKLNVK-LSDKKIVNITIDMKQF 2317
N F +K + + + L + K++LS S V+ L + ++ +F
Sbjct: 240 NEFKRKWKQDVRGNARAMMKLNNAAEVAKQILSTLPSANCFVESLYEGIDFQCSVSRARF 299
Query: 2318 FTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTT-LLTS 2376
++ L + + K L ANLT DIN V+L GGS+R+ + + + + F + +L S
Sbjct: 300 ESLCSSLFPKCLEPIEKVLEQANLTKTDINKVVLCGGSSRIPKLQQLIKDLFPSVEVLNS 359
Query: 2377 IDPDKAVVFGAAIQA 2391
I PD+ + GAA QA
Sbjct: 360 ISPDEVIAIGAAKQA 374
|
Human HSPA14 (also known as 70-kDa heat shock protein 14, HSP70L1, HSP70-4; the gene encoding HSPA14 maps to 10p13), is ribosome-associated and belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). HSPA14 interacts with the J-protein MPP11 to form the mammalian ribosome-associated complex (mRAC). HSPA14 participates in a pathway along with Nijmegen breakage syndrome 1 (NBS1, also known as p85 or nibrin), heat shock transcription factor 4b (HSF4b), and HSPA4 (belonging to a different subfamily), that induces tumor migration, invasion, and transformation. HSPA14 is a potent T helper cell (Th1) polarizing adjuvant that contributes to antitumor immune responses. Length = 375 |
| >gnl|CDD|216592 pfam01592, NifU_N, NifU-like N terminal domain | Back alignment and domain information |
|---|
Score = 165 bits (419), Expect = 4e-47
Identities = 67/97 (69%), Positives = 77/97 (79%), Gaps = 4/97 (4%)
Query: 375 YSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVN-KNGVITDAKFKTY 433
YS+KVLDH++NPRNVGV E+ D G VG+PACGD M+LQIKV+ I DAKFKT+
Sbjct: 2 YSDKVLDHFKNPRNVGVLEEAD---AVGDVGSPACGDAMRLQIKVDEDTDRIEDAKFKTF 58
Query: 434 GCGSAIASSSLVTEWVKGKTLDEAMSIKNTDIAEELV 470
GCGSAIASSS +TE VKGKTLDEA+ I NTDIAEEL
Sbjct: 59 GCGSAIASSSALTELVKGKTLDEALKITNTDIAEELG 95
|
This domain is found in NifU in combination with pfam01106. This domain is found on isolated in several bacterial species. The nif genes are responsible for nitrogen fixation. However this domain is found in bacteria that do not fix nitrogen, so it may have a broader significance in the cell than nitrogen fixation. These proteins appear to be scaffold proteins for iron-sulfur clusters. Length = 126 |
| >gnl|CDD|216592 pfam01592, NifU_N, NifU-like N terminal domain | Back alignment and domain information |
|---|
Score = 165 bits (419), Expect = 4e-47
Identities = 67/97 (69%), Positives = 77/97 (79%), Gaps = 4/97 (4%)
Query: 1771 YSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVN-KNGVITDAKFKTY 1829
YS+KVLDH++NPRNVGV E+ D G VG+PACGD M+LQIKV+ I DAKFKT+
Sbjct: 2 YSDKVLDHFKNPRNVGVLEEAD---AVGDVGSPACGDAMRLQIKVDEDTDRIEDAKFKTF 58
Query: 1830 GCGSAIASSSLVTEWVKGKTLDEAMSIKNTDIAEELV 1866
GCGSAIASSS +TE VKGKTLDEA+ I NTDIAEEL
Sbjct: 59 GCGSAIASSSALTELVKGKTLDEALKITNTDIAEELG 95
|
This domain is found in NifU in combination with pfam01106. This domain is found on isolated in several bacterial species. The nif genes are responsible for nitrogen fixation. However this domain is found in bacteria that do not fix nitrogen, so it may have a broader significance in the cell than nitrogen fixation. These proteins appear to be scaffold proteins for iron-sulfur clusters. Length = 126 |
| >gnl|CDD|131032 TIGR01977, am_tr_V_EF2568, cysteine desulfurase family protein | Back alignment and domain information |
|---|
Score = 171 bits (435), Expect = 4e-46
Identities = 120/404 (29%), Positives = 186/404 (46%), Gaps = 71/404 (17%)
Query: 2 DYSATT-PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-DPR 59
D +ATT P V + M + + G+P + A + +E+ R +A+L A
Sbjct: 4 DNAATTYPKPDEVYEAMADFYKNYGGSPGRGRYRLALRASREVEETRQLLAKLFNAPSSA 63
Query: 60 EIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLEND-GFRVTYLKP 118
+++T+ AT + N+A+KG K G H+IT EH SV + L+ G +T +K
Sbjct: 64 HVVFTNNATTALNIALKGLL----KEGDHVITTPMEHNSVARPLECLKEQIGVEITIVKC 119
Query: 119 KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVG 178
N GLI+ +++ I ++T L+ V +N G I PI EIGEL + G+ F DAAQ G
Sbjct: 120 DNEGLISPERIKRAIKTNTKLIVVSHASNVTGTILPIEEIGELAQENGIFFILDAAQTAG 179
Query: 179 KIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGHEYG------- 230
I I++ +D+++F+ HK + GP+G G LYIR +++ GG +
Sbjct: 180 VIPIDMTELAIDMLAFTGHKGLLGPQGTGGLYIREG--IKLKPLKSGGTGSHSALIDQPS 237
Query: 231 -----LRSGTLATHQIVGMGEA------FRLARIEMKEELKRILFLQKRLYNGLMESIEE 279
SGTL T I G+ +A I KE + L ++L NGL E I +
Sbjct: 238 ELPDRFESGTLNTPGIAGLNAGIKFIEKIGIANIAKKECM-----LTEKLLNGLRE-INK 291
Query: 280 IYINGDMN--NRIPHNLNISFNFIEGES------LLMAIKDIAVSSGSACTSASLEPSYV 331
+ I G + NR+ +SF +EG +L DIA +G C
Sbjct: 292 VKIYGPADPANRVG---VVSFT-VEGIDSEEVADILDEKFDIATRTGLHCAP-------- 339
Query: 332 LRALGCNDELAHSS--------IRFTIGRFTTEKEIDFTIKLLK 367
LAH + IR ++G F TE+EI+ ++ L
Sbjct: 340 ---------LAHKTIGTFATGTIRLSLGYFNTEEEIEKLLEALS 374
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown [Unknown function, Enzymes of unknown specificity]. Length = 376 |
| >gnl|CDD|131032 TIGR01977, am_tr_V_EF2568, cysteine desulfurase family protein | Back alignment and domain information |
|---|
Score = 169 bits (429), Expect = 3e-45
Identities = 120/407 (29%), Positives = 186/407 (45%), Gaps = 72/407 (17%)
Query: 1396 IVFKDATT--PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA- 1452
I F +A T P V + M + + G+P + A + +E+ R +A+L A
Sbjct: 1 IYFDNAATTYPKPDEVYEAMADFYKNYGGSPGRGRYRLALRASREVEETRQLLAKLFNAP 60
Query: 1453 DPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLEND-GFRVTY 1511
+++T+ AT + N+A+KG K G H+IT EH SV + L+ G +T
Sbjct: 61 SSAHVVFTNNATTALNIALKGLL----KEGDHVITTPMEHNSVARPLECLKEQIGVEITI 116
Query: 1512 LKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQ 1571
+K N GLI+ +++ I ++T L+ V +N G I PI EIGEL + G+ F DAAQ
Sbjct: 117 VKCDNEGLISPERIKRAIKTNTKLIVVSHASNVTGTILPIEEIGELAQENGIFFILDAAQ 176
Query: 1572 AVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGHEYG---- 1626
G I I++ +D+++F+ HK + GP+G G LYIR +++ GG +
Sbjct: 177 TAGVIPIDMTELAIDMLAFTGHKGLLGPQGTGGLYIREG--IKLKPLKSGGTGSHSALID 234
Query: 1627 --------LRSGTLATHQIVGMGEA------FRLARIEMKEELKRILFLQKRLYNGLMES 1672
SGTL T I G+ +A I KE + L ++L NGL E
Sbjct: 235 QPSELPDRFESGTLNTPGIAGLNAGIKFIEKIGIANIAKKECM-----LTEKLLNGLRE- 288
Query: 1673 IEEIYINGDMN--NRIPHNLNISFNFIEGES------LLMAIKDIAVSSGSACTSASLEP 1724
I ++ I G + NR+ +SF +EG +L DIA +G C
Sbjct: 289 INKVKIYGPADPANRVG---VVSFT-VEGIDSEEVADILDEKFDIATRTGLHCAP----- 339
Query: 1725 SYVLRALGCNDELAHSS--------IRFTIGRFTTEKEIDFTIKLLK 1763
LAH + IR ++G F TE+EI+ ++ L
Sbjct: 340 ------------LAHKTIGTFATGTIRLSLGYFNTEEEIEKLLEALS 374
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown [Unknown function, Enzymes of unknown specificity]. Length = 376 |
| >gnl|CDD|212672 cd10230, HYOU1-like_NBD, Nucleotide-binding domain of human HYOU1 and similar proteins | Back alignment and domain information |
|---|
Score = 161 bits (409), Expect = 2e-42
Identities = 110/389 (28%), Positives = 175/389 (44%), Gaps = 35/389 (8%)
Query: 640 IGIDFGTTNSLVAIVRNNIP-EVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPK 698
+GID G+ VA+V+ +P E++ ++ PS V + +++ G A P+
Sbjct: 1 LGIDLGSEWIKVALVKPGVPFEIVLNEESKRKTPSAVAFKGGERLF-GSDASSLAARFPQ 59
Query: 699 NTISSIKRFIARDLKNIN----TNSFPYDF---QNKFGMLHIKTISGIK-SPIEISAQIF 750
+K + + + + + P + G + K G + S E+ A I
Sbjct: 60 QVYLHLKDLLGKPADDPSVSLYQSRHPLPYLVVDESRGTVAFKISDGEEYSVEELVAMIL 119
Query: 751 ITLKKIAENAVNNR-IFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAY 809
KK+AE + VITVP YF QRQ +AA+LAGLNVL L+N+ T+AA+ Y
Sbjct: 120 NYAKKLAEEHAKEAPVKDVVITVPPYFTQAQRQALLDAAELAGLNVLALVNDGTAAALNY 179
Query: 810 KLDKNIFEG---IFAVYDLGGGTFDISILKFKN----------GVFKVLSVGGDSNLGGD 856
LD+ YD+G G+ ++++F +VL VG D LGG
Sbjct: 180 ALDRRFENNKPQYVLFYDMGAGSTTATVVEFSPVEEKEKSKTVPQIEVLGVGWDRTLGGR 239
Query: 857 DFDYCLFSWIVKNAFLKKLSYKDVNI--------LMIKSREIKELLSYQSSVKLNVK-LS 907
+FD L + F +K K L+ ++ KE+LS S ++++ L
Sbjct: 240 EFDLRLAD-HLAKEFEEKHKAKVDVRTNPRAMAKLLKEANRAKEVLSANSEAPVSIESLY 298
Query: 908 DKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHE 967
D I +F + L R + KAL A LT+KDI++V L+GG+TR+ + E
Sbjct: 299 DDIDFKTKITRAEFEELCADLFERAVAPIKKALESAGLTLKDIDSVELIGGATRVPKVQE 358
Query: 968 GVSNFFKT-TLLTSIDPDKAVVFGAAIQA 995
+S L ++ D+A GAA A
Sbjct: 359 ELSEAVGKKKLGKHLNADEAAAMGAAYYA 387
|
This subgroup includes human HYOU1 (also known as human hypoxia up-regulated 1, GRP170; HSP12A; ORP150; GRP-170; ORP-150; the human HYOU1 gene maps to11q23.1-q23.3) and Saccharomyces cerevisiae Lhs1p (also known as Cer1p, SsI1). Mammalian HYOU1 functions as a nucleotide exchange factor (NEF) for HSPA5 (alos known as BiP, Grp78 or HspA5) and may also function as a HSPA5-independent chaperone. S. cerevisiae Lhs1p, does not have a detectable endogenous ATPase activity like canonical HSP70s, but functions as a NEF for Kar2p; it's interaction with Kar2p is stimulated by nucleotide-binding. In addition, Lhs1p has a nucleotide-independent holdase activity that prevents heat-induced aggregation of proteins in vitro. This subgroup belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as NEFs, to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 388 |
| >gnl|CDD|212672 cd10230, HYOU1-like_NBD, Nucleotide-binding domain of human HYOU1 and similar proteins | Back alignment and domain information |
|---|
Score = 161 bits (409), Expect = 2e-42
Identities = 110/389 (28%), Positives = 175/389 (44%), Gaps = 35/389 (8%)
Query: 2036 IGIDFGTTNSLVAIVRNNIP-EVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPK 2094
+GID G+ VA+V+ +P E++ ++ PS V + +++ G A P+
Sbjct: 1 LGIDLGSEWIKVALVKPGVPFEIVLNEESKRKTPSAVAFKGGERLF-GSDASSLAARFPQ 59
Query: 2095 NTISSIKRFIARDLKNIN----TNSFPYDF---QNKFGMLHIKTISGIK-SPIEISAQIF 2146
+K + + + + + P + G + K G + S E+ A I
Sbjct: 60 QVYLHLKDLLGKPADDPSVSLYQSRHPLPYLVVDESRGTVAFKISDGEEYSVEELVAMIL 119
Query: 2147 ITLKKIAENAVNNR-IFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAY 2205
KK+AE + VITVP YF QRQ +AA+LAGLNVL L+N+ T+AA+ Y
Sbjct: 120 NYAKKLAEEHAKEAPVKDVVITVPPYFTQAQRQALLDAAELAGLNVLALVNDGTAAALNY 179
Query: 2206 KLDKNIFEG---IFAVYDLGGGTFDISILKFKN----------GVFKVLSVGGDSNLGGD 2252
LD+ YD+G G+ ++++F +VL VG D LGG
Sbjct: 180 ALDRRFENNKPQYVLFYDMGAGSTTATVVEFSPVEEKEKSKTVPQIEVLGVGWDRTLGGR 239
Query: 2253 DFDYCLFSWIVKNAFLKKLSYKDVNI--------LMIKSREIKELLSYQSSVKLNVK-LS 2303
+FD L + F +K K L+ ++ KE+LS S ++++ L
Sbjct: 240 EFDLRLAD-HLAKEFEEKHKAKVDVRTNPRAMAKLLKEANRAKEVLSANSEAPVSIESLY 298
Query: 2304 DKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHE 2363
D I +F + L R + KAL A LT+KDI++V L+GG+TR+ + E
Sbjct: 299 DDIDFKTKITRAEFEELCADLFERAVAPIKKALESAGLTLKDIDSVELIGGATRVPKVQE 358
Query: 2364 GVSNFFKT-TLLTSIDPDKAVVFGAAIQA 2391
+S L ++ D+A GAA A
Sbjct: 359 ELSEAVGKKKLGKHLNADEAAAMGAAYYA 387
|
This subgroup includes human HYOU1 (also known as human hypoxia up-regulated 1, GRP170; HSP12A; ORP150; GRP-170; ORP-150; the human HYOU1 gene maps to11q23.1-q23.3) and Saccharomyces cerevisiae Lhs1p (also known as Cer1p, SsI1). Mammalian HYOU1 functions as a nucleotide exchange factor (NEF) for HSPA5 (alos known as BiP, Grp78 or HspA5) and may also function as a HSPA5-independent chaperone. S. cerevisiae Lhs1p, does not have a detectable endogenous ATPase activity like canonical HSP70s, but functions as a NEF for Kar2p; it's interaction with Kar2p is stimulated by nucleotide-binding. In addition, Lhs1p has a nucleotide-independent holdase activity that prevents heat-induced aggregation of proteins in vitro. This subgroup belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as NEFs, to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 388 |
| >gnl|CDD|131034 TIGR01979, sufS, cysteine desulfurases, SufSfamily | Back alignment and domain information |
|---|
Score = 156 bits (397), Expect = 9e-41
Identities = 109/393 (27%), Positives = 172/393 (43%), Gaps = 38/393 (9%)
Query: 4 SATTPIDPR-VVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-DPREI 61
SA T P+ V+D + Y R N H A +A E R +VA+ I A EI
Sbjct: 24 SAATSQKPQQVIDAVAEYYRNSNANVHRGIHTLSVRATEAYEAVREKVAKFINAASDEEI 83
Query: 62 IWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDGFRVTYLKPKN 120
++T G TES NL K G I+ + EH + + + L E G + ++ +
Sbjct: 84 VFTRGTTESINLVAYSWGDSNLKAGDEIVISEMEHHANIVPWQLLAERTGATLKFIPLDD 143
Query: 121 NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKI 180
+G + L LE+ + T LV++ V+N +G + P+ EI +L G D AQAV +
Sbjct: 144 DGTLDLDDLEKLLTEKTKLVAITHVSNVLGTVNPVEEIAKLAHQVGAKVLVDGAQAVPHM 203
Query: 181 DINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGG------HE------ 228
+++Q D FS HK+YGP GIG LY + ++ + GG E
Sbjct: 204 PVDVQALDCDFYVFSGHKMYGPTGIGVLYGKEELLEQMPPFLGGGEMIAEVSFEETTYNE 263
Query: 229 --YGLRSGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEIYINGD 285
+ +GT ++G+G A L I ++ L L E I + I G
Sbjct: 264 APHKFEAGTPNIAGVIGLGAAIDYLEAIGLENIEAHEHELTAYALERLGE-IPGLRIYGP 322
Query: 286 MNNRIPHNLNISFNFIEGE-----SLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDE 340
+ + ISFN +EG ++ + IAV SG C +P ++R G
Sbjct: 323 RDAEDRGGI-ISFN-VEGVHPHDVGTILDEEGIAVRSGHHCA----QP--LMRRFG---- 370
Query: 341 LAHSSIRFTIGRFTTEKEID-FTIKLLKMKEFF 372
++ R + + TE++ID L K+++FF
Sbjct: 371 -VPATCRASFYIYNTEEDIDALVEALKKVRKFF 402
|
This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 403 |
| >gnl|CDD|131034 TIGR01979, sufS, cysteine desulfurases, SufSfamily | Back alignment and domain information |
|---|
Score = 155 bits (393), Expect = 3e-40
Identities = 110/398 (27%), Positives = 175/398 (43%), Gaps = 39/398 (9%)
Query: 1396 IVFKD-ATTPIDPR-VVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA- 1452
+V+ D A T P+ V+D + Y R N H A +A E R +VA+ I A
Sbjct: 19 LVYLDSAATSQKPQQVIDAVAEYYRNSNANVHRGIHTLSVRATEAYEAVREKVAKFINAA 78
Query: 1453 DPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDGFRVTY 1511
EI++T G TES NL K G I+ + EH + + + L E G + +
Sbjct: 79 SDEEIVFTRGTTESINLVAYSWGDSNLKAGDEIVISEMEHHANIVPWQLLAERTGATLKF 138
Query: 1512 LKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQ 1571
+ ++G + L LE+ + T LV++ V+N +G + P+ EI +L G D AQ
Sbjct: 139 IPLDDDGTLDLDDLEKLLTEKTKLVAITHVSNVLGTVNPVEEIAKLAHQVGAKVLVDGAQ 198
Query: 1572 AVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGG------HE- 1624
AV + +++Q D FS HK+YGP GIG LY + ++ + GG E
Sbjct: 199 AVPHMPVDVQALDCDFYVFSGHKMYGPTGIGVLYGKEELLEQMPPFLGGGEMIAEVSFEE 258
Query: 1625 -------YGLRSGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEI 1676
+ +GT ++G+G A L I ++ L L E I +
Sbjct: 259 TTYNEAPHKFEAGTPNIAGVIGLGAAIDYLEAIGLENIEAHEHELTAYALERLGE-IPGL 317
Query: 1677 YINGDMNNRIPHNLNISFNFIEGE-----SLLMAIKDIAVSSGSACTSASLEPSYVLRAL 1731
I G + + ISFN +EG ++ + IAV SG C +P ++R
Sbjct: 318 RIYGPRDAEDRGGI-ISFN-VEGVHPHDVGTILDEEGIAVRSGHHCA----QP--LMRRF 369
Query: 1732 GCNDELAHSSIRFTIGRFTTEKEID-FTIKLLKMKEFF 1768
G ++ R + + TE++ID L K+++FF
Sbjct: 370 G-----VPATCRASFYIYNTEEDIDALVEALKKVRKFF 402
|
This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 403 |
| >gnl|CDD|223892 COG0822, IscU, NifU homolog involved in Fe-S cluster formation [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 142 bits (361), Expect = 5e-39
Identities = 64/99 (64%), Positives = 77/99 (77%), Gaps = 5/99 (5%)
Query: 373 MSYSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKT 432
YSEK+LDHY+NPRNVGV + D VG G VGAPACGDV+ L +KV+ NGVI DAKFK
Sbjct: 5 DLYSEKILDHYKNPRNVGVLDDAD--VGVGHVGAPACGDVITLYLKVD-NGVIEDAKFKG 61
Query: 433 YGCGSAIASSSLVTEWVKGKTLDEAMSIK--NTDIAEEL 469
+GC +IASSS++TE VKGKTLDEA+ I TD+A+EL
Sbjct: 62 FGCAISIASSSMMTELVKGKTLDEALKITEAFTDMAKEL 100
|
Length = 150 |
| >gnl|CDD|223892 COG0822, IscU, NifU homolog involved in Fe-S cluster formation [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 142 bits (361), Expect = 5e-39
Identities = 64/99 (64%), Positives = 77/99 (77%), Gaps = 5/99 (5%)
Query: 1769 MSYSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKT 1828
YSEK+LDHY+NPRNVGV + D VG G VGAPACGDV+ L +KV+ NGVI DAKFK
Sbjct: 5 DLYSEKILDHYKNPRNVGVLDDAD--VGVGHVGAPACGDVITLYLKVD-NGVIEDAKFKG 61
Query: 1829 YGCGSAIASSSLVTEWVKGKTLDEAMSIK--NTDIAEEL 1865
+GC +IASSS++TE VKGKTLDEA+ I TD+A+EL
Sbjct: 62 FGCAISIASSSMMTELVKGKTLDEALKITEAFTDMAKEL 100
|
Length = 150 |
| >gnl|CDD|212689 cd11739, HSPH1_NBD, Nucleotide-binding domain of HSPH1 | Back alignment and domain information |
|---|
Score = 150 bits (379), Expect = 1e-38
Identities = 106/382 (27%), Positives = 185/382 (48%), Gaps = 23/382 (6%)
Query: 640 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 699
+G D G + +A+ R E + +++ PS++ + + +G AK Q N
Sbjct: 3 VGFDVGFQSCYIAVARAGGIETVANEFSDRCTPSVISFGSKNRT-IGVAAKNQQITHANN 61
Query: 700 TISSIKRFIARDLKN----INTNSFPYDF-QNKFGMLHIKTI----SGIKSPIEISAQIF 750
T+S+ KRF R + + YD K G + +K + + S +I+A +
Sbjct: 62 TVSNFKRFHGRAFNDPFVQKEKENLSYDLVPLKNGGVGVKVMYMGEEHLFSVEQITAMLL 121
Query: 751 ITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYK 810
LK+ AEN + + VI+VP++F D +R+ +AA++ GLN LRL+N+ T+ A+ Y
Sbjct: 122 TKLKETAENNLKKPVTDCVISVPSFFTDAERRSVLDAAQIVGLNCLRLMNDMTAVALNYG 181
Query: 811 LDKNIFEG------IFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCL-- 862
+ K I D+G F +S F G KVL D LGG +FD L
Sbjct: 182 IYKQDLPSLDEKPRIVVFVDMGHSAFQVSACAFNKGKLKVLGTAFDPFLGGKNFDEKLVE 241
Query: 863 -FSWIVKNAFLKKLSYKDVNILMI--KSREIKELLSYQSS-VKLNVK-LSDKKIVNITID 917
F K + K +L + + ++K+L+S S+ + LN++ + K V+ ++
Sbjct: 242 HFCAEFKTKYKLDAKSKIRALLRLYQECEKLKKLMSSNSTDLPLNIECFMNDKDVSGKMN 301
Query: 918 MKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTL 977
QF + L+ R + L +L ++D++ V +VGG+TR+ + E ++ FF +
Sbjct: 302 RSQFEELCADLLQRIEVPLYSLLEQTHLKVEDVSAVEIVGGATRIPAVKERIAKFFGKDV 361
Query: 978 LTSIDPDKAVVFGAAIQANFLS 999
T+++ D+AV G A+Q LS
Sbjct: 362 STTLNADEAVARGCALQCAILS 383
|
Human HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3) suppresses the aggregation of denatured proteins caused by heat shock in vitro, and may substitute for HSP70 family proteins to suppress the aggregation of denatured proteins in cells under severe stress. It reduces the protein aggregation and cytotoxicity associated with Polyglutamine (PolyQ) diseases, including Huntington's disease, which are a group of inherited neurodegenerative disorders sharing the characteristic feature of having insoluble protein aggregates in neurons. The expression of HSPH1 is elevated in various malignant tumors, including malignant melanoma, and there is a direct correlation between HSPH1 expression and B-cell non-Hodgkin lymphomas (B-NHLs) aggressiveness and proliferation. HSPH1 belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 383 |
| >gnl|CDD|212689 cd11739, HSPH1_NBD, Nucleotide-binding domain of HSPH1 | Back alignment and domain information |
|---|
Score = 150 bits (379), Expect = 1e-38
Identities = 106/382 (27%), Positives = 185/382 (48%), Gaps = 23/382 (6%)
Query: 2036 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 2095
+G D G + +A+ R E + +++ PS++ + + +G AK Q N
Sbjct: 3 VGFDVGFQSCYIAVARAGGIETVANEFSDRCTPSVISFGSKNRT-IGVAAKNQQITHANN 61
Query: 2096 TISSIKRFIARDLKN----INTNSFPYDF-QNKFGMLHIKTI----SGIKSPIEISAQIF 2146
T+S+ KRF R + + YD K G + +K + + S +I+A +
Sbjct: 62 TVSNFKRFHGRAFNDPFVQKEKENLSYDLVPLKNGGVGVKVMYMGEEHLFSVEQITAMLL 121
Query: 2147 ITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYK 2206
LK+ AEN + + VI+VP++F D +R+ +AA++ GLN LRL+N+ T+ A+ Y
Sbjct: 122 TKLKETAENNLKKPVTDCVISVPSFFTDAERRSVLDAAQIVGLNCLRLMNDMTAVALNYG 181
Query: 2207 LDKNIFEG------IFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCL-- 2258
+ K I D+G F +S F G KVL D LGG +FD L
Sbjct: 182 IYKQDLPSLDEKPRIVVFVDMGHSAFQVSACAFNKGKLKVLGTAFDPFLGGKNFDEKLVE 241
Query: 2259 -FSWIVKNAFLKKLSYKDVNILMI--KSREIKELLSYQSS-VKLNVK-LSDKKIVNITID 2313
F K + K +L + + ++K+L+S S+ + LN++ + K V+ ++
Sbjct: 242 HFCAEFKTKYKLDAKSKIRALLRLYQECEKLKKLMSSNSTDLPLNIECFMNDKDVSGKMN 301
Query: 2314 MKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTL 2373
QF + L+ R + L +L ++D++ V +VGG+TR+ + E ++ FF +
Sbjct: 302 RSQFEELCADLLQRIEVPLYSLLEQTHLKVEDVSAVEIVGGATRIPAVKERIAKFFGKDV 361
Query: 2374 LTSIDPDKAVVFGAAIQANFLS 2395
T+++ D+AV G A+Q LS
Sbjct: 362 STTLNADEAVARGCALQCAILS 383
|
Human HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3) suppresses the aggregation of denatured proteins caused by heat shock in vitro, and may substitute for HSP70 family proteins to suppress the aggregation of denatured proteins in cells under severe stress. It reduces the protein aggregation and cytotoxicity associated with Polyglutamine (PolyQ) diseases, including Huntington's disease, which are a group of inherited neurodegenerative disorders sharing the characteristic feature of having insoluble protein aggregates in neurons. The expression of HSPH1 is elevated in various malignant tumors, including malignant melanoma, and there is a direct correlation between HSPH1 expression and B-cell non-Hodgkin lymphomas (B-NHLs) aggressiveness and proliferation. HSPH1 belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 383 |
| >gnl|CDD|212674 cd10232, ScSsz1p_like_NBD, Nucleotide-binding domain of Saccharmomyces cerevisiae Ssz1pp and similar proteins | Back alignment and domain information |
|---|
Score = 148 bits (376), Expect = 4e-38
Identities = 105/390 (26%), Positives = 180/390 (46%), Gaps = 39/390 (10%)
Query: 639 SIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNI-DP 697
IGI+FG T S +A + +V+ ++ G IPS + Y + Y G +AK Q I +
Sbjct: 2 VIGINFGNTYSSIACINQGKADVIANEDGERQIPSAISYH-GEQEYHGNQAK-AQLIRNA 59
Query: 698 KNTISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTISGIK----------SPIEISA 747
KNTI++ + + + I+ ++ ++ + K + E++
Sbjct: 60 KNTITNFRDLLGKPFSEIDVSAAAAAAPVPVAVIDVGGTVQEKEEPVPKETILTVHEVTV 119
Query: 748 QIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAI 807
+ LK+ AE+ + ++ GAV++VP +F+D Q + AA+ AGL VL+L+ EP +A +
Sbjct: 120 RFLRRLKEAAEDFLGKKVAGAVLSVPTWFSDEQTEALVKAAEAAGLPVLQLIPEPAAALL 179
Query: 808 AYKLDKN----IFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLF 863
AY + + V D GG D+S++ + G++ +L+ D LGGD D L
Sbjct: 180 AYDAGEPTEDEALDRNVVVADFGGTRTDVSVIAVRGGLYTILATAHDPGLGGDTLDDALV 239
Query: 864 SWIVKNAFLKKLSYKDVNI---------LMIKSREIKELLSYQSSVKLNVK-LSDKKIVN 913
K F KK K + L +S K+ LS +S +V+ L++ +
Sbjct: 240 KHFAKE-FTKK--TK-TDPRTNARALAKLRAESEITKKTLSASTSATCSVESLAEGIDFH 295
Query: 914 ITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFF 973
+I+ +F + + + + A+ A L DI+ V+LVGG+ + +S F
Sbjct: 296 SSINRLRFELLASAVFRQFAAFVTSAVAKAGLDALDIDEVLLVGGTAFTPKLASNLSYLF 355
Query: 974 --KTTLLTSI------DPDKAVVFGAAIQA 995
TT+ I DP + V G AIQA
Sbjct: 356 PETTTITAPITVSKALDPSELVARGCAIQA 385
|
Saccharomyces cerevisiae Ssz1p (also known as /Pdr13p/YHR064C) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some family members are not chaperones but rather, function as NEFs for their Hsp70 partners, while other family members function as both chaperones and NEFs. Ssz1 does not function as a chaperone; it facilitates the interaction between the HSP70 Ssb protein and its partner J-domain protein Zuo1 (also known as zuotin) on the ribosome. Ssz1 is found in a stable heterodimer (called RAC, ribosome associated complex) with Zuo1. Zuo1 can only stimulate the ATPase activity of Ssb, when it is in complex with Ssz1. Ssz1 binds ATP but neither nucleotide-binding, hydrolysis, or its SBD, is needed for its in vivo function. Length = 386 |
| >gnl|CDD|212674 cd10232, ScSsz1p_like_NBD, Nucleotide-binding domain of Saccharmomyces cerevisiae Ssz1pp and similar proteins | Back alignment and domain information |
|---|
Score = 148 bits (376), Expect = 4e-38
Identities = 105/390 (26%), Positives = 180/390 (46%), Gaps = 39/390 (10%)
Query: 2035 SIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNI-DP 2093
IGI+FG T S +A + +V+ ++ G IPS + Y + Y G +AK Q I +
Sbjct: 2 VIGINFGNTYSSIACINQGKADVIANEDGERQIPSAISYH-GEQEYHGNQAK-AQLIRNA 59
Query: 2094 KNTISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTISGIK----------SPIEISA 2143
KNTI++ + + + I+ ++ ++ + K + E++
Sbjct: 60 KNTITNFRDLLGKPFSEIDVSAAAAAAPVPVAVIDVGGTVQEKEEPVPKETILTVHEVTV 119
Query: 2144 QIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAI 2203
+ LK+ AE+ + ++ GAV++VP +F+D Q + AA+ AGL VL+L+ EP +A +
Sbjct: 120 RFLRRLKEAAEDFLGKKVAGAVLSVPTWFSDEQTEALVKAAEAAGLPVLQLIPEPAAALL 179
Query: 2204 AYKLDKN----IFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLF 2259
AY + + V D GG D+S++ + G++ +L+ D LGGD D L
Sbjct: 180 AYDAGEPTEDEALDRNVVVADFGGTRTDVSVIAVRGGLYTILATAHDPGLGGDTLDDALV 239
Query: 2260 SWIVKNAFLKKLSYKDVNI---------LMIKSREIKELLSYQSSVKLNVK-LSDKKIVN 2309
K F KK K + L +S K+ LS +S +V+ L++ +
Sbjct: 240 KHFAKE-FTKK--TK-TDPRTNARALAKLRAESEITKKTLSASTSATCSVESLAEGIDFH 295
Query: 2310 ITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFF 2369
+I+ +F + + + + A+ A L DI+ V+LVGG+ + +S F
Sbjct: 296 SSINRLRFELLASAVFRQFAAFVTSAVAKAGLDALDIDEVLLVGGTAFTPKLASNLSYLF 355
Query: 2370 --KTTLLTSI------DPDKAVVFGAAIQA 2391
TT+ I DP + V G AIQA
Sbjct: 356 PETTTITAPITVSKALDPSELVARGCAIQA 385
|
Saccharomyces cerevisiae Ssz1p (also known as /Pdr13p/YHR064C) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some family members are not chaperones but rather, function as NEFs for their Hsp70 partners, while other family members function as both chaperones and NEFs. Ssz1 does not function as a chaperone; it facilitates the interaction between the HSP70 Ssb protein and its partner J-domain protein Zuo1 (also known as zuotin) on the ribosome. Ssz1 is found in a stable heterodimer (called RAC, ribosome associated complex) with Zuo1. Zuo1 can only stimulate the ATPase activity of Ssb, when it is in complex with Ssz1. Ssz1 binds ATP but neither nucleotide-binding, hydrolysis, or its SBD, is needed for its in vivo function. Length = 386 |
| >gnl|CDD|212682 cd11732, HSP105-110_like_NBD, Nucleotide-binding domain of 105/110 kDa heat shock proteins including HSPA4, HYOU1, and similar proteins | Back alignment and domain information |
|---|
Score = 147 bits (373), Expect = 5e-38
Identities = 96/377 (25%), Positives = 185/377 (49%), Gaps = 22/377 (5%)
Query: 640 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 699
G+D G NS++A+ RN +++ ++ PS+V + P + Y+G+ K Q + KN
Sbjct: 1 FGLDLGNNNSVLAVARNRGIDIVVNEVSNRSTPSVVGFGPKNR-YLGETGKNKQTSNIKN 59
Query: 700 TISSIKRFIARDLKNIN--------TNSFPYDFQNKFGMLHIKTISGIK-SPIEISAQIF 750
T++++KR I D + + T+ K G S +++A
Sbjct: 60 TVANLKRIIGLDYHHPDFEQESKHFTSKLVELDDKKTGAEVRFAGEKHVFSATQLAAMFI 119
Query: 751 ITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYK 810
+K + I I VP ++ + QR +AA++AGLN +R++N+ T+A ++Y
Sbjct: 120 DKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAARIAGLNPVRIVNDVTAAGVSYG 179
Query: 811 LDK-NIFEG-----IFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFS 864
+ K ++ EG I A D+G ++ SI+ FK G KVL D + GG DFD +
Sbjct: 180 IFKTDLPEGEEKPRIVAFVDIGHSSYTCSIVAFKKGQLKVLGTACDKHFGGRDFDLAITE 239
Query: 865 WIV-----KNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVK-LSDKKIVNITIDM 918
K + + K N ++ + ++K++LS ++ +V+ + + V+ +
Sbjct: 240 HFADEFKTKYKIDIRENPKAYNRILTAAEKLKKVLSANTNAPFSVESVMNDVDVSSQLSR 299
Query: 919 KQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLL 978
++ + + L+ R +KAL A L+ ++++ V ++GG+TR+ + + +S F L
Sbjct: 300 EELEELVKPLLERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIPTLKQSISEAFGKPLS 359
Query: 979 TSIDPDKAVVFGAAIQA 995
T+++ D+A+ GAA
Sbjct: 360 TTLNQDEAIAKGAAFIC 376
|
This subfamily include the human proteins, HSPA4 (also known as 70-kDa heat shock protein 4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps to 5q31.1), HSPA4L (also known as 70-kDa heat shock protein 4-like, APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to 4q28), and HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3), HYOU1 (also known as human hypoxia up-regulated 1, GRP170; HSP12A; ORP150; GRP-170; ORP-150; the human HYOU1 gene maps to11q23.1-q23.3), Saccharomyces cerevisiae Sse1p, Sse2p, and Lhs1p, and a sea urchin sperm receptor. It belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family, and includes proteins believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is also regulated by J-domain proteins. Length = 377 |
| >gnl|CDD|212682 cd11732, HSP105-110_like_NBD, Nucleotide-binding domain of 105/110 kDa heat shock proteins including HSPA4, HYOU1, and similar proteins | Back alignment and domain information |
|---|
Score = 147 bits (373), Expect = 5e-38
Identities = 96/377 (25%), Positives = 185/377 (49%), Gaps = 22/377 (5%)
Query: 2036 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 2095
G+D G NS++A+ RN +++ ++ PS+V + P + Y+G+ K Q + KN
Sbjct: 1 FGLDLGNNNSVLAVARNRGIDIVVNEVSNRSTPSVVGFGPKNR-YLGETGKNKQTSNIKN 59
Query: 2096 TISSIKRFIARDLKNIN--------TNSFPYDFQNKFGMLHIKTISGIK-SPIEISAQIF 2146
T++++KR I D + + T+ K G S +++A
Sbjct: 60 TVANLKRIIGLDYHHPDFEQESKHFTSKLVELDDKKTGAEVRFAGEKHVFSATQLAAMFI 119
Query: 2147 ITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYK 2206
+K + I I VP ++ + QR +AA++AGLN +R++N+ T+A ++Y
Sbjct: 120 DKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAARIAGLNPVRIVNDVTAAGVSYG 179
Query: 2207 LDK-NIFEG-----IFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFS 2260
+ K ++ EG I A D+G ++ SI+ FK G KVL D + GG DFD +
Sbjct: 180 IFKTDLPEGEEKPRIVAFVDIGHSSYTCSIVAFKKGQLKVLGTACDKHFGGRDFDLAITE 239
Query: 2261 WIV-----KNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVK-LSDKKIVNITIDM 2314
K + + K N ++ + ++K++LS ++ +V+ + + V+ +
Sbjct: 240 HFADEFKTKYKIDIRENPKAYNRILTAAEKLKKVLSANTNAPFSVESVMNDVDVSSQLSR 299
Query: 2315 KQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLL 2374
++ + + L+ R +KAL A L+ ++++ V ++GG+TR+ + + +S F L
Sbjct: 300 EELEELVKPLLERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIPTLKQSISEAFGKPLS 359
Query: 2375 TSIDPDKAVVFGAAIQA 2391
T+++ D+A+ GAA
Sbjct: 360 TTLNQDEAIAKGAAFIC 376
|
This subfamily include the human proteins, HSPA4 (also known as 70-kDa heat shock protein 4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps to 5q31.1), HSPA4L (also known as 70-kDa heat shock protein 4-like, APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to 4q28), and HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3), HYOU1 (also known as human hypoxia up-regulated 1, GRP170; HSP12A; ORP150; GRP-170; ORP-150; the human HYOU1 gene maps to11q23.1-q23.3), Saccharomyces cerevisiae Sse1p, Sse2p, and Lhs1p, and a sea urchin sperm receptor. It belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family, and includes proteins believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is also regulated by J-domain proteins. Length = 377 |
| >gnl|CDD|143480 cd06664, IscU_like, Iron-sulfur cluster scaffold-like proteins | Back alignment and domain information |
|---|
Score = 136 bits (345), Expect = 4e-37
Identities = 55/94 (58%), Positives = 67/94 (71%), Gaps = 4/94 (4%)
Query: 375 YSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKTYG 434
YSE +LDHY NPRNVG E D GTG VG P CGD + L +KV +G ITDAKF+ +G
Sbjct: 2 YSEIILDHYRNPRNVGRLEDAD---GTGEVGNPLCGDEITLYLKVE-DGRITDAKFQGFG 57
Query: 435 CGSAIASSSLVTEWVKGKTLDEAMSIKNTDIAEE 468
C +IAS+SL+TE +KGKTLDEA+ + N DIA
Sbjct: 58 CAISIASASLLTELIKGKTLDEALKLLNKDIAML 91
|
IscU_like and NifU_like proteins. IscU and NifU function as a scaffold for the assembly of [2Fe-2S] clusters before they are transferred to apo target proteins. They are highly conserved and play vital roles in the ISC and NIF systems of Fe-S protein maturation. NIF genes participate in nitrogen fixation in several isolated bacterial species. The NifU domain, however, is also found in bacteria that do not fix nitrogen, so it may have wider significance in the cell. Human IscU interacts with frataxin, the Friedreich ataxia gene product, and incorrectly spliced IscU has been shown to disrupt iron homeostasis in skeletal muscle and cause myopathy. Length = 123 |
| >gnl|CDD|143480 cd06664, IscU_like, Iron-sulfur cluster scaffold-like proteins | Back alignment and domain information |
|---|
Score = 136 bits (345), Expect = 4e-37
Identities = 55/94 (58%), Positives = 67/94 (71%), Gaps = 4/94 (4%)
Query: 1771 YSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKTYG 1830
YSE +LDHY NPRNVG E D GTG VG P CGD + L +KV +G ITDAKF+ +G
Sbjct: 2 YSEIILDHYRNPRNVGRLEDAD---GTGEVGNPLCGDEITLYLKVE-DGRITDAKFQGFG 57
Query: 1831 CGSAIASSSLVTEWVKGKTLDEAMSIKNTDIAEE 1864
C +IAS+SL+TE +KGKTLDEA+ + N DIA
Sbjct: 58 CAISIASASLLTELIKGKTLDEALKLLNKDIAML 91
|
IscU_like and NifU_like proteins. IscU and NifU function as a scaffold for the assembly of [2Fe-2S] clusters before they are transferred to apo target proteins. They are highly conserved and play vital roles in the ISC and NIF systems of Fe-S protein maturation. NIF genes participate in nitrogen fixation in several isolated bacterial species. The NifU domain, however, is also found in bacteria that do not fix nitrogen, so it may have wider significance in the cell. Human IscU interacts with frataxin, the Friedreich ataxia gene product, and incorrectly spliced IscU has been shown to disrupt iron homeostasis in skeletal muscle and cause myopathy. Length = 123 |
| >gnl|CDD|132460 TIGR03419, NifU_clost, FeS cluster assembly scaffold protein NifU, Clostridium type | Back alignment and domain information |
|---|
Score = 133 bits (337), Expect = 3e-36
Identities = 61/125 (48%), Positives = 77/125 (61%), Gaps = 17/125 (13%)
Query: 375 YSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKTYG 434
YSEKV+DH+ NPRNVG E D G G VG P CGD+MK+ +KV ++ +I D KFKT+G
Sbjct: 1 YSEKVMDHFMNPRNVGEIENAD---GVGEVGNPKCGDIMKIFLKV-EDDIIKDVKFKTFG 56
Query: 435 CGSAIASSSLVTEWVKGKTLDEAMSIKNTDIAEELVTKKAAKY-------------INKY 481
CG+AIASSS+ TE +KGKTL+EA + N +AE L K IN Y
Sbjct: 57 CGAAIASSSMATEMIKGKTLEEAWELTNKAVAEALDGLPPVKMHCSVLAEEAIHKAINDY 116
Query: 482 IQKRG 486
+K G
Sbjct: 117 REKNG 121
|
NifU and NifS form a pair of iron-sulfur (FeS) cluster biosynthesis proteins much simpler than the ISC and SUF systems. Members of this protein family are a distinct group of NifU-like proteins, found always to a NifS-like protein and restricted to species that lack a SUF system. Typically, NIF systems service a smaller number of FeS-containing proteins than do ISC or SUF. Members of this particular branch typically are found, almost half the time, near the mnmA gene, involved in the carboxymethylaminomethyl modification of U34 in some tRNAs (see GenProp0704). While other NifU proteins are associated with nitrogen fixation, this family is not [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 121 |
| >gnl|CDD|132460 TIGR03419, NifU_clost, FeS cluster assembly scaffold protein NifU, Clostridium type | Back alignment and domain information |
|---|
Score = 133 bits (337), Expect = 3e-36
Identities = 61/125 (48%), Positives = 77/125 (61%), Gaps = 17/125 (13%)
Query: 1771 YSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKTYG 1830
YSEKV+DH+ NPRNVG E D G G VG P CGD+MK+ +KV ++ +I D KFKT+G
Sbjct: 1 YSEKVMDHFMNPRNVGEIENAD---GVGEVGNPKCGDIMKIFLKV-EDDIIKDVKFKTFG 56
Query: 1831 CGSAIASSSLVTEWVKGKTLDEAMSIKNTDIAEELVTKKAAKY-------------INKY 1877
CG+AIASSS+ TE +KGKTL+EA + N +AE L K IN Y
Sbjct: 57 CGAAIASSSMATEMIKGKTLEEAWELTNKAVAEALDGLPPVKMHCSVLAEEAIHKAINDY 116
Query: 1878 IQKRG 1882
+K G
Sbjct: 117 REKNG 121
|
NifU and NifS form a pair of iron-sulfur (FeS) cluster biosynthesis proteins much simpler than the ISC and SUF systems. Members of this protein family are a distinct group of NifU-like proteins, found always to a NifS-like protein and restricted to species that lack a SUF system. Typically, NIF systems service a smaller number of FeS-containing proteins than do ISC or SUF. Members of this particular branch typically are found, almost half the time, near the mnmA gene, involved in the carboxymethylaminomethyl modification of U34 in some tRNAs (see GenProp0704). While other NifU proteins are associated with nitrogen fixation, this family is not [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 121 |
| >gnl|CDD|212687 cd11737, HSPA4_NBD, Nucleotide-binding domain of HSPA4 | Back alignment and domain information |
|---|
Score = 141 bits (357), Expect = 7e-36
Identities = 114/389 (29%), Positives = 187/389 (48%), Gaps = 37/389 (9%)
Query: 640 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 699
+GID G + VA+ R E + ++Y P+ + + P + +G AK + KN
Sbjct: 3 VGIDLGFQSCYVAVARAGGIETIANEYSDRCTPACISFGPKNR-SIGAAAKSQVISNAKN 61
Query: 700 TISSIKRFIARDLKN----INTNSFPYDF-QNKFGMLHIKTI----SGIKSPIEISAQIF 750
T+ KRF R + S YD Q G IK + + +++A +
Sbjct: 62 TVQGFKRFHGRAFSDPFVQAEKPSLAYDLVQLPTGSTGIKVMYMEEERNFTTEQVTAMLL 121
Query: 751 ITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYK 810
LK+ AE+A+ + V++VP ++ D +R+ +A ++AGLN LRL+NE T+ A+AY
Sbjct: 122 TKLKETAESALKKPVVDCVVSVPCFYTDAERRSVMDATQIAGLNCLRLMNETTAVALAYG 181
Query: 811 LDKNIFEG------IFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFS 864
+ K D+G + +S+ F G KVL+ D+ LGG FD L +
Sbjct: 182 IYKQDLPALEEKPRNVVFVDMGHSAYQVSVCAFNKGKLKVLATAFDTTLGGRKFDEVLVN 241
Query: 865 WIVKNAFLKKLSYKDVNILMIKSR------------EIKELLSYQSS-VKLNVKLSDKKI 911
+ + F KK YK L IKS+ ++K+L+S +S + LN++ I
Sbjct: 242 YFCEE-FGKK--YK----LDIKSKIRALLRLSQECEKLKKLMSANASDLPLNIECFMNDI 294
Query: 912 -VNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVS 970
V+ T++ +F + L+ R L A L +DI V +VGG+TR+ + E +S
Sbjct: 295 DVSGTMNRGKFLEMCDDLLARVEPPLRSVLEQAKLKKEDIYAVEIVGGATRIPAVKEKIS 354
Query: 971 NFFKTTLLTSIDPDKAVVFGAAIQANFLS 999
FF + T+++ D+AV G A+Q LS
Sbjct: 355 KFFGKEVSTTLNADEAVARGCALQCAILS 383
|
Human HSPA4 (also known as 70-kDa heat shock protein 4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps to 5q31.1) responds to acidic pH stress, is involved in the radioadaptive response, is required for normal spermatogenesis and is overexpressed in hepatocellular carcinoma. It participates in a pathway along with NBS1 (Nijmegen breakage syndrome 1, also known as p85 or nibrin), heat shock transcription factor 4b (HDF4b), and HSPA14 (belonging to a different HSP70 subfamily) that induces tumor migration, invasion, and transformation. HSPA4 expression in sperm was increased in men with oligozoospermia, especially in those with varicocele. HSPA4 belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 383 |
| >gnl|CDD|212687 cd11737, HSPA4_NBD, Nucleotide-binding domain of HSPA4 | Back alignment and domain information |
|---|
Score = 141 bits (357), Expect = 7e-36
Identities = 114/389 (29%), Positives = 187/389 (48%), Gaps = 37/389 (9%)
Query: 2036 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 2095
+GID G + VA+ R E + ++Y P+ + + P + +G AK + KN
Sbjct: 3 VGIDLGFQSCYVAVARAGGIETIANEYSDRCTPACISFGPKNR-SIGAAAKSQVISNAKN 61
Query: 2096 TISSIKRFIARDLKN----INTNSFPYDF-QNKFGMLHIKTI----SGIKSPIEISAQIF 2146
T+ KRF R + S YD Q G IK + + +++A +
Sbjct: 62 TVQGFKRFHGRAFSDPFVQAEKPSLAYDLVQLPTGSTGIKVMYMEEERNFTTEQVTAMLL 121
Query: 2147 ITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYK 2206
LK+ AE+A+ + V++VP ++ D +R+ +A ++AGLN LRL+NE T+ A+AY
Sbjct: 122 TKLKETAESALKKPVVDCVVSVPCFYTDAERRSVMDATQIAGLNCLRLMNETTAVALAYG 181
Query: 2207 LDKNIFEG------IFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFS 2260
+ K D+G + +S+ F G KVL+ D+ LGG FD L +
Sbjct: 182 IYKQDLPALEEKPRNVVFVDMGHSAYQVSVCAFNKGKLKVLATAFDTTLGGRKFDEVLVN 241
Query: 2261 WIVKNAFLKKLSYKDVNILMIKSR------------EIKELLSYQSS-VKLNVKLSDKKI 2307
+ + F KK YK L IKS+ ++K+L+S +S + LN++ I
Sbjct: 242 YFCEE-FGKK--YK----LDIKSKIRALLRLSQECEKLKKLMSANASDLPLNIECFMNDI 294
Query: 2308 -VNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVS 2366
V+ T++ +F + L+ R L A L +DI V +VGG+TR+ + E +S
Sbjct: 295 DVSGTMNRGKFLEMCDDLLARVEPPLRSVLEQAKLKKEDIYAVEIVGGATRIPAVKEKIS 354
Query: 2367 NFFKTTLLTSIDPDKAVVFGAAIQANFLS 2395
FF + T+++ D+AV G A+Q LS
Sbjct: 355 KFFGKEVSTTLNADEAVARGCALQCAILS 383
|
Human HSPA4 (also known as 70-kDa heat shock protein 4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps to 5q31.1) responds to acidic pH stress, is involved in the radioadaptive response, is required for normal spermatogenesis and is overexpressed in hepatocellular carcinoma. It participates in a pathway along with NBS1 (Nijmegen breakage syndrome 1, also known as p85 or nibrin), heat shock transcription factor 4b (HDF4b), and HSPA14 (belonging to a different HSP70 subfamily) that induces tumor migration, invasion, and transformation. HSPA4 expression in sperm was increased in men with oligozoospermia, especially in those with varicocele. HSPA4 belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 383 |
| >gnl|CDD|131062 TIGR02007, fdx_isc, ferredoxin, 2Fe-2S type, ISC system | Back alignment and domain information |
|---|
Score = 125 bits (316), Expect = 2e-33
Identities = 45/73 (61%), Positives = 55/73 (75%)
Query: 2530 GAIFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVEEDMLNK 2589
GA+ G ++ D L N I IEHACEKSCAC TCH I+REGF+ + +A+E EEDML+K
Sbjct: 15 GAVVEAKPGETILDVALDNGIEIEHACEKSCACTTCHCIVREGFDSLEEASEQEEDMLDK 74
Query: 2590 AWGLEENSRLSCQ 2602
AWGLE +SRLSCQ
Sbjct: 75 AWGLEPDSRLSCQ 87
|
This family consists of proteobacterial ferredoxins associated with and essential to the ISC system of 2Fe-2S cluster assembly. This family is closely related to (but excludes) eukaryotic (mitochondrial) adrenodoxins, which are ferredoxins involved in electron transfer to P450 cytochromes [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 110 |
| >gnl|CDD|212688 cd11738, HSPA4L_NBD, Nucleotide-binding domain of HSPA4L | Back alignment and domain information |
|---|
Score = 132 bits (333), Expect = 1e-32
Identities = 104/385 (27%), Positives = 188/385 (48%), Gaps = 29/385 (7%)
Query: 640 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 699
+GID G N +A+ R+ E + ++Y P+ + L +G AK + +N
Sbjct: 3 VGIDLGFLNCYIAVARSGGIETIANEYSDRCTPACIS-LGSRTRAIGNAAKSQIVTNVRN 61
Query: 700 TISSIKRFIARDLKN--INTN--SFPYDFQN--------KFGMLHIKTISGIKSPIEISA 747
TI K+ R + + T PY+ Q K L + I+ +++
Sbjct: 62 TIHGFKKLHGRSFDDPIVQTERIRLPYELQKMPNGSVGVKVRYLEEERPFAIE---QVTG 118
Query: 748 QIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAI 807
+ LK+ +ENA+ + VI++P++F D +R+ AA++AGLN LRL+NE T+ A+
Sbjct: 119 MLLAKLKETSENALKKPVADCVISIPSFFTDAERRSVMAAAQVAGLNCLRLMNETTAVAL 178
Query: 808 AYKLDKNIFEGI------FAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYC 861
AY + K + D+G + +S+ F G KVL+ D LGG +FD
Sbjct: 179 AYGIYKQDLPALDEKPRNVVFIDMGHSAYQVSVCAFNKGKLKVLATTFDPYLGGRNFDEA 238
Query: 862 LFSWIVKNAFLK-KLSYKDVNILMIK----SREIKELLSYQSS-VKLNVK-LSDKKIVNI 914
L + K K++ K+ + +++ ++K+L+S +S + LN++ + V+
Sbjct: 239 LVDYFCDEFKTKYKINVKENSRALLRLYQECEKLKKLMSANASDLPLNIECFMNDLDVSS 298
Query: 915 TIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFK 974
++ QF + L+ R + ANL +DI ++ +VGG+TR+ + E +++FF
Sbjct: 299 KMNRAQFEQLCASLLARVEPPLKAVMEQANLQREDIYSIEIVGGATRIPAVKEQITSFFL 358
Query: 975 TTLLTSIDPDKAVVFGAAIQANFLS 999
+ T+++ D+AV G A+Q LS
Sbjct: 359 KDISTTLNADEAVARGCALQCAILS 383
|
Human HSPA4L (also known as 70-kDa heat shock protein 4-like, APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to 4q28) is expressed ubiquitously and predominantly in the testis. It is required for normal spermatogenesis and plays a role in osmotolerance. HSPA4L belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 383 |
| >gnl|CDD|212688 cd11738, HSPA4L_NBD, Nucleotide-binding domain of HSPA4L | Back alignment and domain information |
|---|
Score = 132 bits (333), Expect = 1e-32
Identities = 104/385 (27%), Positives = 188/385 (48%), Gaps = 29/385 (7%)
Query: 2036 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 2095
+GID G N +A+ R+ E + ++Y P+ + L +G AK + +N
Sbjct: 3 VGIDLGFLNCYIAVARSGGIETIANEYSDRCTPACIS-LGSRTRAIGNAAKSQIVTNVRN 61
Query: 2096 TISSIKRFIARDLKN--INTN--SFPYDFQN--------KFGMLHIKTISGIKSPIEISA 2143
TI K+ R + + T PY+ Q K L + I+ +++
Sbjct: 62 TIHGFKKLHGRSFDDPIVQTERIRLPYELQKMPNGSVGVKVRYLEEERPFAIE---QVTG 118
Query: 2144 QIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAI 2203
+ LK+ +ENA+ + VI++P++F D +R+ AA++AGLN LRL+NE T+ A+
Sbjct: 119 MLLAKLKETSENALKKPVADCVISIPSFFTDAERRSVMAAAQVAGLNCLRLMNETTAVAL 178
Query: 2204 AYKLDKNIFEGI------FAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYC 2257
AY + K + D+G + +S+ F G KVL+ D LGG +FD
Sbjct: 179 AYGIYKQDLPALDEKPRNVVFIDMGHSAYQVSVCAFNKGKLKVLATTFDPYLGGRNFDEA 238
Query: 2258 LFSWIVKNAFLK-KLSYKDVNILMIK----SREIKELLSYQSS-VKLNVK-LSDKKIVNI 2310
L + K K++ K+ + +++ ++K+L+S +S + LN++ + V+
Sbjct: 239 LVDYFCDEFKTKYKINVKENSRALLRLYQECEKLKKLMSANASDLPLNIECFMNDLDVSS 298
Query: 2311 TIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFK 2370
++ QF + L+ R + ANL +DI ++ +VGG+TR+ + E +++FF
Sbjct: 299 KMNRAQFEQLCASLLARVEPPLKAVMEQANLQREDIYSIEIVGGATRIPAVKEQITSFFL 358
Query: 2371 TTLLTSIDPDKAVVFGAAIQANFLS 2395
+ T+++ D+AV G A+Q LS
Sbjct: 359 KDISTTLNADEAVARGCALQCAILS 383
|
Human HSPA4L (also known as 70-kDa heat shock protein 4-like, APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to 4q28) is expressed ubiquitously and predominantly in the testis. It is required for normal spermatogenesis and plays a role in osmotolerance. HSPA4L belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 383 |
| >gnl|CDD|131062 TIGR02007, fdx_isc, ferredoxin, 2Fe-2S type, ISC system | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 2e-31
Identities = 44/79 (55%), Positives = 54/79 (68%)
Query: 1134 GAIFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVEEDMLNK 1193
GA+ G ++ D L N I IEHACEKSCAC TCH I+REGF+ + +A+E EEDML+K
Sbjct: 15 GAVVEAKPGETILDVALDNGIEIEHACEKSCACTTCHCIVREGFDSLEEASEQEEDMLDK 74
Query: 1194 AWGLEENSRLSFDAKRGKI 1212
AWGLE +SRLS A
Sbjct: 75 AWGLEPDSRLSCQAVVADE 93
|
This family consists of proteobacterial ferredoxins associated with and essential to the ISC system of 2Fe-2S cluster assembly. This family is closely related to (but excludes) eukaryotic (mitochondrial) adrenodoxins, which are ferredoxins involved in electron transfer to P450 cytochromes [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 110 |
| >gnl|CDD|233679 TIGR02000, NifU_proper, Fe-S cluster assembly protein NifU | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 3e-29
Identities = 48/96 (50%), Positives = 69/96 (71%), Gaps = 4/96 (4%)
Query: 375 YSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVN-KNGVITDAKFKTY 433
Y++KV +H+ NP+N GV E + G VG+ +CGD ++L +KV+ ++ I DA F+T+
Sbjct: 4 YTDKVKEHFYNPKNAGVVEDANAV---GEVGSISCGDALRLMLKVDPESDKIVDAGFQTF 60
Query: 434 GCGSAIASSSLVTEWVKGKTLDEAMSIKNTDIAEEL 469
GCGSAIASSS +TE +KG TLDEA+ + N DIA+ L
Sbjct: 61 GCGSAIASSSALTEMIKGLTLDEALKVSNQDIADYL 96
|
Three different but partially homologous Fe-S cluster assembly systems have been described: Isc, Suf, and Nif. The latter is associated with donation of an Fe-S cluster to nitrogenase in a number of nitrogen-fixing species. NifU, described here, consists of an N-terminal domain (pfam01592) and a C-terminal domain (pfam01106). Homologs with an equivalent domain archictecture from Helicobacter and Campylobacter, however, are excluded from this model by a high trusted cutoff. The model, therefore, is specific for NifU involved in nitrogenase maturation. The related model TIGR01999 homologous to the N-terminus of this model describes IscU from the Isc system as in E. coli, Saccharomyces cerevisiae, and Homo sapiens [Biosynthesis of cofactors, prosthetic groups, and carriers, Other, Central intermediary metabolism, Nitrogen fixation]. Length = 290 |
| >gnl|CDD|233679 TIGR02000, NifU_proper, Fe-S cluster assembly protein NifU | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 3e-29
Identities = 48/96 (50%), Positives = 69/96 (71%), Gaps = 4/96 (4%)
Query: 1771 YSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVN-KNGVITDAKFKTY 1829
Y++KV +H+ NP+N GV E + G VG+ +CGD ++L +KV+ ++ I DA F+T+
Sbjct: 4 YTDKVKEHFYNPKNAGVVEDANAV---GEVGSISCGDALRLMLKVDPESDKIVDAGFQTF 60
Query: 1830 GCGSAIASSSLVTEWVKGKTLDEAMSIKNTDIAEEL 1865
GCGSAIASSS +TE +KG TLDEA+ + N DIA+ L
Sbjct: 61 GCGSAIASSSALTEMIKGLTLDEALKVSNQDIADYL 96
|
Three different but partially homologous Fe-S cluster assembly systems have been described: Isc, Suf, and Nif. The latter is associated with donation of an Fe-S cluster to nitrogenase in a number of nitrogen-fixing species. NifU, described here, consists of an N-terminal domain (pfam01592) and a C-terminal domain (pfam01106). Homologs with an equivalent domain archictecture from Helicobacter and Campylobacter, however, are excluded from this model by a high trusted cutoff. The model, therefore, is specific for NifU involved in nitrogenase maturation. The related model TIGR01999 homologous to the N-terminus of this model describes IscU from the Isc system as in E. coli, Saccharomyces cerevisiae, and Homo sapiens [Biosynthesis of cofactors, prosthetic groups, and carriers, Other, Central intermediary metabolism, Nitrogen fixation]. Length = 290 |
| >gnl|CDD|223706 COG0633, Fdx, Ferredoxin [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 90.2 bits (224), Expect = 3e-21
Identities = 35/77 (45%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 2526 EIKNGAIFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVEED 2585
+ + N G +L +A +N I IE+AC AC TC V + EGF+E++ E EED
Sbjct: 10 DGEGDVTEAVNEGETLLEAAERNGIPIEYACRGG-ACGTCRVKVLEGFDEVSPPEESEED 68
Query: 2586 MLNKAWGLEENSRLSCQ 2602
+L A GLE NSRLSCQ
Sbjct: 69 LL-DAAGLEGNSRLSCQ 84
|
Length = 102 |
| >gnl|CDD|132433 TIGR03392, FeS_syn_CsdA, cysteine desulfurase, catalytic subunit CsdA | Back alignment and domain information |
|---|
Score = 98.0 bits (244), Expect = 4e-21
Identities = 64/211 (30%), Positives = 96/211 (45%), Gaps = 7/211 (3%)
Query: 4 SATTPIDPR-VVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-DPREI 61
SA T + P+ V+D + R+ G H + E AR +VA+ + A D I
Sbjct: 22 SAATALKPQAVIDATQQFYRLSSGTVHRSQHQQAQSLTARYELARQQVARFLNAPDAENI 81
Query: 62 IWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL---ENDGFRVTYLKP 118
+WT G TES NL + A + G II + EH + L I L + G +V L
Sbjct: 82 VWTRGTTESINLVAQSYARPRLQPGDEIIVSEAEHHANL--IPWLMVAQQTGAKVVKLPI 139
Query: 119 KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVG 178
+ L + QL E + T ++++ ++N G + L G + D AQ V
Sbjct: 140 GADLLPDIRQLPELLTPRTRILALGQMSNVTGGCPDLARAITLAHQYGAVVVVDGAQGVV 199
Query: 179 KIDINIQNYKVDLMSFSAHKIYGPKGIGALY 209
++Q +D +FS HK+YGP GIG LY
Sbjct: 200 HGPPDVQALDIDFYAFSGHKLYGPTGIGVLY 230
|
Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 398 |
| >gnl|CDD|182799 PRK10874, PRK10874, cysteine sulfinate desulfinase; Provisional | Back alignment and domain information |
|---|
Score = 97.0 bits (242), Expect = 1e-20
Identities = 62/211 (29%), Positives = 95/211 (45%), Gaps = 7/211 (3%)
Query: 4 SATTPIDPR-VVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-DPREI 61
SA T + P+ V++ + + GN E AR +VAQL+ A D + I
Sbjct: 25 SAATALKPQAVIEATQQFYSLSAGNVHRSQFAAAQRLTARYEAAREQVAQLLNAPDAKNI 84
Query: 62 IWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL---ENDGFRVTYLKP 118
+WT G TES NL + A + G II + EH + L + L + G +V L
Sbjct: 85 VWTRGTTESINLVAQSYARPRLQPGDEIIVSEAEHHANL--VPWLMVAQQTGAKVVKLPL 142
Query: 119 KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVG 178
+ L + L E I T ++++ ++N G + L G++ D AQ
Sbjct: 143 GADRLPDVDLLPELITPRTRILALGQMSNVTGGCPDLARAITLAHQAGMVVMVDGAQGAV 202
Query: 179 KIDINIQNYKVDLMSFSAHKIYGPKGIGALY 209
++Q +D +FS HK+YGP GIG LY
Sbjct: 203 HFPADVQALDIDFYAFSGHKLYGPTGIGVLY 233
|
Length = 401 |
| >gnl|CDD|182799 PRK10874, PRK10874, cysteine sulfinate desulfinase; Provisional | Back alignment and domain information |
|---|
Score = 96.6 bits (241), Expect = 1e-20
Identities = 55/170 (32%), Positives = 82/170 (48%), Gaps = 6/170 (3%)
Query: 1440 EKARNEVAQLIYA-DPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDS 1498
E AR +VAQL+ A D + I+WT G TES NL + A + G II + EH + L
Sbjct: 66 EAAREQVAQLLNAPDAKNIVWTRGTTESINLVAQSYARPRLQPGDEIIVSEAEHHANL-- 123
Query: 1499 IRKL---ENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIG 1555
+ L + G +V L + L + L E I T ++++ ++N G +
Sbjct: 124 VPWLMVAQQTGAKVVKLPLGADRLPDVDLLPELITPRTRILALGQMSNVTGGCPDLARAI 183
Query: 1556 ELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALY 1605
L G++ D AQ ++Q +D +FS HK+YGP GIG LY
Sbjct: 184 TLAHQAGMVVMVDGAQGAVHFPADVQALDIDFYAFSGHKLYGPTGIGVLY 233
|
Length = 401 |
| >gnl|CDD|132433 TIGR03392, FeS_syn_CsdA, cysteine desulfurase, catalytic subunit CsdA | Back alignment and domain information |
|---|
Score = 96.4 bits (240), Expect = 2e-20
Identities = 65/215 (30%), Positives = 98/215 (45%), Gaps = 8/215 (3%)
Query: 1397 VFKD-ATTPIDPR-VVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-D 1453
V+ D A T + P+ V+D + R+ G H + E AR +VA+ + A D
Sbjct: 18 VYLDSAATALKPQAVIDATQQFYRLSSGTVHRSQHQQAQSLTARYELARQQVARFLNAPD 77
Query: 1454 PREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL---ENDGFRVT 1510
I+WT G TES NL + A + G II + EH + L I L + G +V
Sbjct: 78 AENIVWTRGTTESINLVAQSYARPRLQPGDEIIVSEAEHHANL--IPWLMVAQQTGAKVV 135
Query: 1511 YLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAA 1570
L + L + QL E + T ++++ ++N G + L G + D A
Sbjct: 136 KLPIGADLLPDIRQLPELLTPRTRILALGQMSNVTGGCPDLARAITLAHQYGAVVVVDGA 195
Query: 1571 QAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALY 1605
Q V ++Q +D +FS HK+YGP GIG LY
Sbjct: 196 QGVVHGPPDVQALDIDFYAFSGHKLYGPTGIGVLY 230
|
Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 398 |
| >gnl|CDD|215460 PLN02855, PLN02855, Bifunctional selenocysteine lyase/cysteine desulfurase | Back alignment and domain information |
|---|
Score = 95.2 bits (237), Expect = 4e-20
Identities = 105/393 (26%), Positives = 172/393 (43%), Gaps = 41/393 (10%)
Query: 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-DPR 59
+D +AT+ V+D + Y N H A A E AR +VA I A R
Sbjct: 36 LDNAATSQKPAAVLDALQDYYEEYNSNVHRGIHALSAKATDAYELARKKVAAFINASTSR 95
Query: 60 EIIWTSGATESNNLAIK--GAAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDGFRVTYL 116
EI++T ATE+ NL G A+ K G +I EH S + + + + G + ++
Sbjct: 96 EIVFTRNATEAINLVAYTWGLANL--KPGDEVILSVAEHHSNIVPWQLVAQKTGAVLKFV 153
Query: 117 KPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQA 176
+ ++ + QL+E + T LV+ V+N +G I P+ +I + G DA Q+
Sbjct: 154 GLTPDEVLDVEQLKELLSEKTKLVATHHVSNVLGSILPVEDIVHWAHAVGAKVLVDACQS 213
Query: 177 VGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGG---------GH 227
V + +++Q D + S+HK+ GP GIG L+ + + + + GG
Sbjct: 214 VPHMPVDVQTLGADFLVASSHKMCGPTGIGFLWGKSDLLESMPPFLGGGEMISDVFLDHS 273
Query: 228 EYG-----LRSGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEIY 281
Y +GT A + +G+G A L+ I M + + L LY L S+ +
Sbjct: 274 TYAPPPSRFEAGTPAIGEAIGLGAAIDYLSEIGMDRIHEYEVELGTYLYEKL-SSVPGVR 332
Query: 282 INGDMNNRIPHNLNI-SFNFIEG------ESLLMAIKDIAVSSGSACTSASLEPSYVLRA 334
I G + + +FN +EG + L +A+ SG C +P + R
Sbjct: 333 IYGPKPSEGVGRAALCAFN-VEGIHPTDLSTFLDQQHGVAIRSGHHCA----QPLH--RY 385
Query: 335 LGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK 367
LG N A +S+ F + T++E+D I LK
Sbjct: 386 LGVNAS-ARASLYF----YNTKEEVDAFIHALK 413
|
Length = 424 |
| >gnl|CDD|215460 PLN02855, PLN02855, Bifunctional selenocysteine lyase/cysteine desulfurase | Back alignment and domain information |
|---|
Score = 94.4 bits (235), Expect = 9e-20
Identities = 107/397 (26%), Positives = 173/397 (43%), Gaps = 43/397 (10%)
Query: 1395 NIVFKD-ATTPIDPR-VVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA 1452
+V+ D A T P V+D + Y N H A A E AR +VA I A
Sbjct: 32 KLVYLDNAATSQKPAAVLDALQDYYEEYNSNVHRGIHALSAKATDAYELARKKVAAFINA 91
Query: 1453 -DPREIIWTSGATESNNLAIK--GAAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDGFR 1508
REI++T ATE+ NL G A+ K G +I EH S + + + + G
Sbjct: 92 STSREIVFTRNATEAINLVAYTWGLANL--KPGDEVILSVAEHHSNIVPWQLVAQKTGAV 149
Query: 1509 VTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCD 1568
+ ++ + ++ + QL+E + T LV+ V+N +G I P+ +I + G D
Sbjct: 150 LKFVGLTPDEVLDVEQLKELLSEKTKLVATHHVSNVLGSILPVEDIVHWAHAVGAKVLVD 209
Query: 1569 AAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGG------- 1621
A Q+V + +++Q D + S+HK+ GP GIG L+ + + + + GG
Sbjct: 210 ACQSVPHMPVDVQTLGADFLVASSHKMCGPTGIGFLWGKSDLLESMPPFLGGGEMISDVF 269
Query: 1622 --GHEYG-----LRSGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESI 1673
Y +GT A + +G+G A L+ I M + + L LY L S+
Sbjct: 270 LDHSTYAPPPSRFEAGTPAIGEAIGLGAAIDYLSEIGMDRIHEYEVELGTYLYEKL-SSV 328
Query: 1674 EEIYINGDMNNRIPHNLNI-SFNFIEG------ESLLMAIKDIAVSSGSACTSASLEPSY 1726
+ I G + + +FN +EG + L +A+ SG C +P +
Sbjct: 329 PGVRIYGPKPSEGVGRAALCAFN-VEGIHPTDLSTFLDQQHGVAIRSGHHCA----QPLH 383
Query: 1727 VLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK 1763
R LG N A +S+ F + T++E+D I LK
Sbjct: 384 --RYLGVNAS-ARASLYF----YNTKEEVDAFIHALK 413
|
Length = 424 |
| >gnl|CDD|181766 PRK09295, PRK09295, bifunctional cysteine desulfurase/selenocysteine lyase; Validated | Back alignment and domain information |
|---|
Score = 93.3 bits (232), Expect = 2e-19
Identities = 50/176 (28%), Positives = 80/176 (45%), Gaps = 2/176 (1%)
Query: 39 AEKAIEKARNEVAQLIYA-DPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHK 97
A + +E R + A I A E+++ G TE NL + + G +II + EH
Sbjct: 65 ATEKMENVRKQAALFINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISEMEHH 124
Query: 98 SVLDSIRKL-ENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPIL 156
+ + + L G + + +G + L L T L+++ V+N +G P+
Sbjct: 125 ANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPALFDERTRLLAITHVSNVLGTENPLA 184
Query: 157 EIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRR 212
E+ L G D AQAV +++Q D FS HK+YGP GIG LY++
Sbjct: 185 EMIALAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKE 240
|
Length = 406 |
| >gnl|CDD|181766 PRK09295, PRK09295, bifunctional cysteine desulfurase/selenocysteine lyase; Validated | Back alignment and domain information |
|---|
Score = 93.3 bits (232), Expect = 2e-19
Identities = 50/176 (28%), Positives = 80/176 (45%), Gaps = 2/176 (1%)
Query: 1435 AEKAIEKARNEVAQLIYA-DPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHK 1493
A + +E R + A I A E+++ G TE NL + + G +II + EH
Sbjct: 65 ATEKMENVRKQAALFINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISEMEHH 124
Query: 1494 SVLDSIRKL-ENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPIL 1552
+ + + L G + + +G + L L T L+++ V+N +G P+
Sbjct: 125 ANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPALFDERTRLLAITHVSNVLGTENPLA 184
Query: 1553 EIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRR 1608
E+ L G D AQAV +++Q D FS HK+YGP GIG LY++
Sbjct: 185 EMIALAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKE 240
|
Length = 406 |
| >gnl|CDD|223706 COG0633, Fdx, Ferredoxin [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 82.9 bits (205), Expect = 1e-18
Identities = 33/75 (44%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 1130 EIKNGAIFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVEED 1189
+ + N G +L +A +N I IE+AC AC TC V + EGF+E++ E EED
Sbjct: 10 DGEGDVTEAVNEGETLLEAAERNGIPIEYACRGG-ACGTCRVKVLEGFDEVSPPEESEED 68
Query: 1190 MLNKAWGLEENSRLS 1204
+L A GLE NSRLS
Sbjct: 69 LL-DAAGLEGNSRLS 82
|
Length = 102 |
| >gnl|CDD|110518 pfam01521, Fe-S_biosyn, Iron-sulphur cluster biosynthesis | Back alignment and domain information |
|---|
Score = 82.2 bits (204), Expect = 1e-18
Identities = 30/70 (42%), Positives = 42/70 (60%)
Query: 470 VTKKAAKYINKYIQKRGKGIGLRLGVYNRGCSGLSYKLEYVDEKRKEDQVFKLNGVQIFI 529
+T AAK+I K + G GLR+GV GCSG SY L + DE + D+VF+ +GV + +
Sbjct: 3 LTDAAAKHIKKLLDLEGGENGLRIGVRYGGCSGFSYGLTFEDEPDEGDEVFEQDGVTVVV 62
Query: 530 NEKDLLYFND 539
+EK L Y
Sbjct: 63 DEKSLPYLEG 72
|
This family is involved in iron-sulphur cluster biosynthesis. Its members include proteins that are involved in nitrogen fixation such as the HesB and HesB-like proteins. Length = 91 |
| >gnl|CDD|110518 pfam01521, Fe-S_biosyn, Iron-sulphur cluster biosynthesis | Back alignment and domain information |
|---|
Score = 82.2 bits (204), Expect = 1e-18
Identities = 30/70 (42%), Positives = 42/70 (60%)
Query: 1866 VTKKAAKYINKYIQKRGKGIGLRLGVYNRGCSGLSYKLEYVDEKRKEDQVFKLNGVQIFI 1925
+T AAK+I K + G GLR+GV GCSG SY L + DE + D+VF+ +GV + +
Sbjct: 3 LTDAAAKHIKKLLDLEGGENGLRIGVRYGGCSGFSYGLTFEDEPDEGDEVFEQDGVTVVV 62
Query: 1926 NEKDLLYFND 1935
+EK L Y
Sbjct: 63 DEKSLPYLEG 72
|
This family is involved in iron-sulphur cluster biosynthesis. Its members include proteins that are involved in nitrogen fixation such as the HesB and HesB-like proteins. Length = 91 |
| >gnl|CDD|213674 TIGR02011, IscA, iron-sulfur cluster assembly protein IscA | Back alignment and domain information |
|---|
Score = 82.2 bits (203), Expect = 3e-18
Identities = 34/69 (49%), Positives = 46/69 (66%)
Query: 470 VTKKAAKYINKYIQKRGKGIGLRLGVYNRGCSGLSYKLEYVDEKRKEDQVFKLNGVQIFI 529
+T AA +N ++ RGKG GLRLGV GCSG++Y LE+VDE +D VF+ GV+I I
Sbjct: 3 LTDSAAARVNTFLANRGKGFGLRLGVKTSGCSGMAYVLEFVDEPTPDDIVFEDKGVKIVI 62
Query: 530 NEKDLLYFN 538
+ K L Y +
Sbjct: 63 DGKSLQYLD 71
|
This model represents the IscA component of the ISC system for iron-sulfur cluster assembly. The ISC system consists of IscRASU, HscAB and an Isc-specific ferredoxin. IscA previously was believed to act as a scaffold and now is seen as an iron donor protein. This clade is limited to the proteobacteria [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 105 |
| >gnl|CDD|213674 TIGR02011, IscA, iron-sulfur cluster assembly protein IscA | Back alignment and domain information |
|---|
Score = 82.2 bits (203), Expect = 3e-18
Identities = 34/69 (49%), Positives = 46/69 (66%)
Query: 1866 VTKKAAKYINKYIQKRGKGIGLRLGVYNRGCSGLSYKLEYVDEKRKEDQVFKLNGVQIFI 1925
+T AA +N ++ RGKG GLRLGV GCSG++Y LE+VDE +D VF+ GV+I I
Sbjct: 3 LTDSAAARVNTFLANRGKGFGLRLGVKTSGCSGMAYVLEFVDEPTPDDIVFEDKGVKIVI 62
Query: 1926 NEKDLLYFN 1934
+ K L Y +
Sbjct: 63 DGKSLQYLD 71
|
This model represents the IscA component of the ISC system for iron-sulfur cluster assembly. The ISC system consists of IscRASU, HscAB and an Isc-specific ferredoxin. IscA previously was believed to act as a scaffold and now is seen as an iron donor protein. This clade is limited to the proteobacteria [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 105 |
| >gnl|CDD|233664 TIGR01976, am_tr_V_VC1184, cysteine desulfurase family protein, VC1184 subfamily | Back alignment and domain information |
|---|
Score = 88.3 bits (219), Expect = 6e-18
Identities = 88/399 (22%), Positives = 154/399 (38%), Gaps = 55/399 (13%)
Query: 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
D A T I V D + L + + A++ ++ AR VA L+ ADP E
Sbjct: 21 FDNPAGTQIPQSVADAVSAALT-RSNANRGGAYESSRRADQVVDDAREAVADLLNADPPE 79
Query: 61 IIWTSGATESNNLAIKGAAHFYK--KRGKHIITVQTEHKSVLDS-IRKLENDG--FRVTY 115
+++ + AT L + + G +I + +H++ + ++ E G +
Sbjct: 80 VVFGANATS---LTFLLSRAISRRWGPGDEVIVTRLDHEANISPWLQAAERAGAKVKWAR 136
Query: 116 LKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQ 175
+ L L + T LV+V +N +G I + I EL + G + DA
Sbjct: 137 VDEATGELHP-DDLASLLSPRTRLVAVTAASNTLGSIVDLAAITELVHAAGALVVVDAVH 195
Query: 176 AVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRN----------------PRTRIE 219
I++Q D ++ SA+K +GP +G L+ R R E
Sbjct: 196 YAPHGLIDVQATGADFLTCSAYKFFGPH-MGILWGRPELLMNLPPYKLTFSYDTGPERFE 254
Query: 220 AQIHGGGHEYGLRSGTLATHQ-IVGMGE-AFRLARIEMKEELKRILFLQKRLYNGLMESI 277
G +Y L +G +A + G+GE A R + + I + RL L+ +
Sbjct: 255 L----GTPQYELLAGVVAAVDYLAGLGESANGSRRERLVASFQAIDAYENRLAEYLLVGL 310
Query: 278 EE-----IYINGDMNNRIPHNLNISFNFIEGES-----LLMAIKDIAVSSGSACTSASLE 327
+ +Y + R+P +SF + G +A + I +G
Sbjct: 311 SDLPGVTLYGVARLAARVP---TVSFT-VHGLPPQRVVRRLADQGIDAWAGHFYAVR--- 363
Query: 328 PSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLL 366
+LR LG NDE +R + + T +E+D ++ L
Sbjct: 364 ---LLRRLGLNDE--GGVVRVGLAHYNTAEEVDRLLEAL 397
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase [Unknown function, Enzymes of unknown specificity]. Length = 397 |
| >gnl|CDD|233664 TIGR01976, am_tr_V_VC1184, cysteine desulfurase family protein, VC1184 subfamily | Back alignment and domain information |
|---|
Score = 85.6 bits (212), Expect = 6e-17
Identities = 90/401 (22%), Positives = 156/401 (38%), Gaps = 57/401 (14%)
Query: 1397 VFKD--ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADP 1454
VF D A T I V D + L + + A++ ++ AR VA L+ ADP
Sbjct: 19 VFFDNPAGTQIPQSVADAVSAALT-RSNANRGGAYESSRRADQVVDDAREAVADLLNADP 77
Query: 1455 REIIWTSGATESNNLAIKGAAHFYK--KRGKHIITVQTEHKSVLDS-IRKLENDG--FRV 1509
E+++ + AT L + + G +I + +H++ + ++ E G +
Sbjct: 78 PEVVFGANATS---LTFLLSRAISRRWGPGDEVIVTRLDHEANISPWLQAAERAGAKVKW 134
Query: 1510 TYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDA 1569
+ L L + T LV+V +N +G I + I EL + G + DA
Sbjct: 135 ARVDEATGELHP-DDLASLLSPRTRLVAVTAASNTLGSIVDLAAITELVHAAGALVVVDA 193
Query: 1570 AQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRN----------------PRTR 1613
I++Q D ++ SA+K +GP +G L+ R R
Sbjct: 194 VHYAPHGLIDVQATGADFLTCSAYKFFGPH-MGILWGRPELLMNLPPYKLTFSYDTGPER 252
Query: 1614 IEAQIHGGGHEYGLRSGTLATHQ-IVGMGE-AFRLARIEMKEELKRILFLQKRLYNGLME 1671
E G +Y L +G +A + G+GE A R + + I + RL L+
Sbjct: 253 FEL----GTPQYELLAGVVAAVDYLAGLGESANGSRRERLVASFQAIDAYENRLAEYLLV 308
Query: 1672 SIEE-----IYINGDMNNRIPHNLNISFNFIEGES-----LLMAIKDIAVSSGSACTSAS 1721
+ + +Y + R+P +SF + G +A + I +G
Sbjct: 309 GLSDLPGVTLYGVARLAARVP---TVSFT-VHGLPPQRVVRRLADQGIDAWAGHFYAVR- 363
Query: 1722 LEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLL 1762
+LR LG NDE +R + + T +E+D ++ L
Sbjct: 364 -----LLRRLGLNDE--GGVVRVGLAHYNTAEEVDRLLEAL 397
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase [Unknown function, Enzymes of unknown specificity]. Length = 397 |
| >gnl|CDD|223393 COG0316, sufA, Fe-S cluster assembly scaffold protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 77.2 bits (191), Expect = 2e-16
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 470 VTKKAAKYINKYIQKRG-KGIGLRLGVYNRGCSGLSYKLEYVDEKRKEDQVFKLNGVQIF 528
+T AA + + K G + +GLR+GV GCSG Y LE+ DE ++D VF+ +GV++
Sbjct: 7 LTDAAAARVKALLAKEGEENLGLRVGVKGGGCSGFQYGLEFDDEINEDDTVFEQDGVKVV 66
Query: 529 INEKDLLYFND 539
++ K L Y
Sbjct: 67 VDPKSLPYLEG 77
|
Length = 110 |
| >gnl|CDD|223393 COG0316, sufA, Fe-S cluster assembly scaffold protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 77.2 bits (191), Expect = 2e-16
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 1866 VTKKAAKYINKYIQKRG-KGIGLRLGVYNRGCSGLSYKLEYVDEKRKEDQVFKLNGVQIF 1924
+T AA + + K G + +GLR+GV GCSG Y LE+ DE ++D VF+ +GV++
Sbjct: 7 LTDAAAARVKALLAKEGEENLGLRVGVKGGGCSGFQYGLEFDDEINEDDTVFEQDGVKVV 66
Query: 1925 INEKDLLYFND 1935
++ K L Y
Sbjct: 67 VDPKSLPYLEG 77
|
Length = 110 |
| >gnl|CDD|212671 cd10229, HSPA12_like_NBD, Nucleotide-binding domain of HSPA12A, HSPA12B and similar proteins | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 6e-16
Identities = 86/427 (20%), Positives = 150/427 (35%), Gaps = 93/427 (21%)
Query: 638 VSIGIDFGTTNSLVA--IVRNNIPEVL-------KDKYGYFLIPSIVRYLPDGKIY-VGK 687
+ +GIDFGTT S VA + ++ P++ + GY +P+ + Y P+GK+ G
Sbjct: 1 LVVGIDFGTTFSGVAYAFLDSSPPDIRVITRWPGGEGRGYCKVPTEILYDPEGKLVAWGY 60
Query: 688 KAK--ITQNIDPKNTISSIKRF----IARDLKNINTNSFPYDFQNKFGMLHIKTISGIKS 741
+A+ + + F LK +K + K+
Sbjct: 61 EAEREYAELEAEDEGWLFFEWFKLLLDPDALKLQG-------------DDKLKPLPPGKT 107
Query: 742 PIEISA----QIFITLKKIAENAVNNRIFGA-----VITVPAYFNDIQRQFTKNAAKLAG 792
+++ A ++ + + N F A V+TVPA ++D +Q + AA AG
Sbjct: 108 AVDVIADYLRYLYEHALEELKKTYGNGEFTALDIEWVLTVPAIWSDAAKQAMREAAIKAG 167
Query: 793 LNV-------LRLLNEPTSAAIA----YKLDKNIFEG-IFAVYDLGGGTFDIS---ILKF 837
L L ++ EP +AA+ + N+ G F V D GGGT D++ +
Sbjct: 168 LVSSREGPDRLLIVLEPEAAALYCLKLLLISLNLKPGDGFLVCDAGGGTVDLTVYEVTSV 227
Query: 838 KNGVFKVLSVGGDSNLGG------------------DDFDYCLFS--W-IVKNAFL-KKL 875
+ K L+ G G W I+ F K
Sbjct: 228 EPLRLKELAAGSGGLCGSTFVDRAFEELLKERLGELFYELPSKSPALWLILMRFFETIKR 287
Query: 876 SYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITI---DMKQFFTITQHLVNRT 932
S+ + +L ++ + + I DMK F ++
Sbjct: 288 SFGG------TDNDTNIVLPGSLALSKKDPERGIRNGELKISGEDMKSLF---DPVIEEI 338
Query: 933 I-LLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFF---KTTLLTSIDPDKAVV 988
I L+ + ++ + + LVGG ++ + F +L DP AVV
Sbjct: 339 IDLI--EEQLEQAEKGDKVKYIFLVGGFGESPYLRSRLKERFSSRGIRVLRPPDPQLAVV 396
Query: 989 FGAAIQA 995
GA +
Sbjct: 397 RGAVLFG 403
|
Human HSPA12A (also known as 70-kDa heat shock protein-12A) and HSPA12B (also known as 70-kDa heat shock protein-12B, chromosome 20 open reading frame 60/C20orf60, dJ1009E24.2) belong to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). No co-chaperones have yet been identified for HSPA12A or HSPA12B. The gene encoding HSPA12A maps to 10q26.12, a cytogenetic region that might represent a common susceptibility locus for both schizophrenia and bipolar affective disorder; reduced expression of HSPA12A has been shown in the prefrontal cortex of subjects with schizophrenia. HSPA12A is also a candidate gene for forelimb-girdle muscular anomaly, an autosomal recessive disorder of Japanese black cattle. HSPA12A is predominantly expressed in neuronal cells. It may also play a role in the atherosclerotic process. The gene encoding HSPA12B maps to 20p13. HSPA12B is predominantly expressed in endothelial cells, is required for angiogenesis, and may interact with known angiogenesis mediators. It may be important for host defense in microglia-mediated immune response. HSPA12B expression is up-regulated in lipopolysaccharide (LPS)-induced inflammatory response in the spinal cord, and mostly located in active microglia; this induced expression may be regulated by activation of MAPK-p38, ERK1/2 and SAPK/JNK signaling pathways. Overexpression of HSPA12B also protects against LPS-induced cardiac dysfunction and involves the preserved activation of the PI3K/Akt signaling pathway. Length = 404 |
| >gnl|CDD|212671 cd10229, HSPA12_like_NBD, Nucleotide-binding domain of HSPA12A, HSPA12B and similar proteins | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 6e-16
Identities = 86/427 (20%), Positives = 150/427 (35%), Gaps = 93/427 (21%)
Query: 2034 VSIGIDFGTTNSLVA--IVRNNIPEVL-------KDKYGYFLIPSIVRYLPDGKIY-VGK 2083
+ +GIDFGTT S VA + ++ P++ + GY +P+ + Y P+GK+ G
Sbjct: 1 LVVGIDFGTTFSGVAYAFLDSSPPDIRVITRWPGGEGRGYCKVPTEILYDPEGKLVAWGY 60
Query: 2084 KAK--ITQNIDPKNTISSIKRF----IARDLKNINTNSFPYDFQNKFGMLHIKTISGIKS 2137
+A+ + + F LK +K + K+
Sbjct: 61 EAEREYAELEAEDEGWLFFEWFKLLLDPDALKLQG-------------DDKLKPLPPGKT 107
Query: 2138 PIEISA----QIFITLKKIAENAVNNRIFGA-----VITVPAYFNDIQRQFTKNAAKLAG 2188
+++ A ++ + + N F A V+TVPA ++D +Q + AA AG
Sbjct: 108 AVDVIADYLRYLYEHALEELKKTYGNGEFTALDIEWVLTVPAIWSDAAKQAMREAAIKAG 167
Query: 2189 LNV-------LRLLNEPTSAAIA----YKLDKNIFEG-IFAVYDLGGGTFDIS---ILKF 2233
L L ++ EP +AA+ + N+ G F V D GGGT D++ +
Sbjct: 168 LVSSREGPDRLLIVLEPEAAALYCLKLLLISLNLKPGDGFLVCDAGGGTVDLTVYEVTSV 227
Query: 2234 KNGVFKVLSVGGDSNLGG------------------DDFDYCLFS--W-IVKNAFL-KKL 2271
+ K L+ G G W I+ F K
Sbjct: 228 EPLRLKELAAGSGGLCGSTFVDRAFEELLKERLGELFYELPSKSPALWLILMRFFETIKR 287
Query: 2272 SYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITI---DMKQFFTITQHLVNRT 2328
S+ + +L ++ + + I DMK F ++
Sbjct: 288 SFGG------TDNDTNIVLPGSLALSKKDPERGIRNGELKISGEDMKSLF---DPVIEEI 338
Query: 2329 I-LLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFF---KTTLLTSIDPDKAVV 2384
I L+ + ++ + + LVGG ++ + F +L DP AVV
Sbjct: 339 IDLI--EEQLEQAEKGDKVKYIFLVGGFGESPYLRSRLKERFSSRGIRVLRPPDPQLAVV 396
Query: 2385 FGAAIQA 2391
GA +
Sbjct: 397 RGAVLFG 403
|
Human HSPA12A (also known as 70-kDa heat shock protein-12A) and HSPA12B (also known as 70-kDa heat shock protein-12B, chromosome 20 open reading frame 60/C20orf60, dJ1009E24.2) belong to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). No co-chaperones have yet been identified for HSPA12A or HSPA12B. The gene encoding HSPA12A maps to 10q26.12, a cytogenetic region that might represent a common susceptibility locus for both schizophrenia and bipolar affective disorder; reduced expression of HSPA12A has been shown in the prefrontal cortex of subjects with schizophrenia. HSPA12A is also a candidate gene for forelimb-girdle muscular anomaly, an autosomal recessive disorder of Japanese black cattle. HSPA12A is predominantly expressed in neuronal cells. It may also play a role in the atherosclerotic process. The gene encoding HSPA12B maps to 20p13. HSPA12B is predominantly expressed in endothelial cells, is required for angiogenesis, and may interact with known angiogenesis mediators. It may be important for host defense in microglia-mediated immune response. HSPA12B expression is up-regulated in lipopolysaccharide (LPS)-induced inflammatory response in the spinal cord, and mostly located in active microglia; this induced expression may be regulated by activation of MAPK-p38, ERK1/2 and SAPK/JNK signaling pathways. Overexpression of HSPA12B also protects against LPS-induced cardiac dysfunction and involves the preserved activation of the PI3K/Akt signaling pathway. Length = 404 |
| >gnl|CDD|178203 PLN02593, PLN02593, adrenodoxin-like ferredoxin protein | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 7e-16
Identities = 32/67 (47%), Positives = 46/67 (68%), Gaps = 2/67 (2%)
Query: 2538 GISLCDALLKNSIFIEHACEKSCACATCHVII--REGFNEINKANEVEEDMLNKAWGLEE 2595
G+SL +A +N I +E ACE S AC+TCHVI+ + +N++ + + E DML+ A+GL E
Sbjct: 20 GMSLLEAAHENDIELEGACEGSLACSTCHVIVMDEKVYNKLPEPTDEENDMLDLAFGLTE 79
Query: 2596 NSRLSCQ 2602
SRL CQ
Sbjct: 80 TSRLGCQ 86
|
Length = 117 |
| >gnl|CDD|233676 TIGR01994, SUF_scaf_2, SUF system FeS assembly protein, NifU family | Back alignment and domain information |
|---|
Score = 75.8 bits (187), Expect = 9e-16
Identities = 36/86 (41%), Positives = 53/86 (61%), Gaps = 4/86 (4%)
Query: 375 YSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKTYG 434
Y + +LDHY+NPR+ G E D TV P CGD + L +K+ I D F+ G
Sbjct: 5 YRQVILDHYKNPRHRGKLE--DATVQERGHN-PTCGDEITLTVKLE-GDRIEDIAFEGEG 60
Query: 435 CGSAIASSSLVTEWVKGKTLDEAMSI 460
C + AS+S++TE +KGKT++EA+S+
Sbjct: 61 CSISQASASMMTELIKGKTVEEALSL 86
|
Three iron-sulfur cluster assembly systems are known so far. ISC is broadly distributed while NIF tends to be associated with nitrogenase in nitrogen-fixing bacteria. The most recently described is SUF, believed to be important to maintain the function during aerobic stress of enzymes with labile Fe-S clusters. It is fairly widely distributed. This family represents one of two different proteins proposed to act as a scaffold on which the Fe-S cluster is built and from which it is transferred [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 137 |
| >gnl|CDD|233676 TIGR01994, SUF_scaf_2, SUF system FeS assembly protein, NifU family | Back alignment and domain information |
|---|
Score = 75.8 bits (187), Expect = 9e-16
Identities = 36/86 (41%), Positives = 53/86 (61%), Gaps = 4/86 (4%)
Query: 1771 YSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKTYG 1830
Y + +LDHY+NPR+ G E D TV P CGD + L +K+ I D F+ G
Sbjct: 5 YRQVILDHYKNPRHRGKLE--DATVQERGHN-PTCGDEITLTVKLE-GDRIEDIAFEGEG 60
Query: 1831 CGSAIASSSLVTEWVKGKTLDEAMSI 1856
C + AS+S++TE +KGKT++EA+S+
Sbjct: 61 CSISQASASMMTELIKGKTVEEALSL 86
|
Three iron-sulfur cluster assembly systems are known so far. ISC is broadly distributed while NIF tends to be associated with nitrogenase in nitrogen-fixing bacteria. The most recently described is SUF, believed to be important to maintain the function during aerobic stress of enzymes with labile Fe-S clusters. It is fairly widely distributed. This family represents one of two different proteins proposed to act as a scaffold on which the Fe-S cluster is built and from which it is transferred [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 137 |
| >gnl|CDD|181914 PRK09502, iscA, iron-sulfur cluster assembly protein; Provisional | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 1e-15
Identities = 31/69 (44%), Positives = 46/69 (66%)
Query: 470 VTKKAAKYINKYIQKRGKGIGLRLGVYNRGCSGLSYKLEYVDEKRKEDQVFKLNGVQIFI 529
++ AA +N ++ RGKG GLRLGV GCSG++Y LE+VDE ED VF+ GV++ +
Sbjct: 5 LSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVV 64
Query: 530 NEKDLLYFN 538
+ K L + +
Sbjct: 65 DGKSLQFLD 73
|
Length = 107 |
| >gnl|CDD|181914 PRK09502, iscA, iron-sulfur cluster assembly protein; Provisional | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 1e-15
Identities = 31/69 (44%), Positives = 46/69 (66%)
Query: 1866 VTKKAAKYINKYIQKRGKGIGLRLGVYNRGCSGLSYKLEYVDEKRKEDQVFKLNGVQIFI 1925
++ AA +N ++ RGKG GLRLGV GCSG++Y LE+VDE ED VF+ GV++ +
Sbjct: 5 LSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVV 64
Query: 1926 NEKDLLYFN 1934
+ K L + +
Sbjct: 65 DGKSLQFLD 73
|
Length = 107 |
| >gnl|CDD|232799 TIGR00049, TIGR00049, Iron-sulfur cluster assembly accessory protein | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 4e-15
Identities = 29/68 (42%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 470 VTKKAAKYINKYIQKRGK-GIGLRLGVYNRGCSGLSYKLEYVDEKRKEDQVFKLNGVQIF 528
+T AAK I + G+ +GLR+GV GCSGL Y LE+ DE ++D+VF+ +GV++
Sbjct: 2 LTDSAAKRIKALLAGEGEPNLGLRVGVKGGGCSGLQYGLEFDDEPNEDDEVFEQDGVKVV 61
Query: 529 INEKDLLY 536
++ K L Y
Sbjct: 62 VDPKSLPY 69
|
Proteins in this subfamily appear to be associated with the process of FeS-cluster assembly. The HesB proteins are associated with the nif gene cluster and the Rhizobium gene IscN has been shown to be required for nitrogen fixation. Nitrogenase includes multiple FeS clusters and many genes for their assembly. The E. coli SufA protein is associated with SufS, a NifS homolog and SufD which are involved in the FeS cluster assembly of the FhnF protein. The Azotobacter protein IscA (homologs of which are also found in E.coli) is associated which IscS, another NifS homolog and IscU, a nifU homolog as well as other factors consistent with a role in FeS cluster chemistry. A homolog from Geobacter contains a selenocysteine in place of an otherwise invariant cysteine, further suggesting a role in redox chemistry [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 105 |
| >gnl|CDD|232799 TIGR00049, TIGR00049, Iron-sulfur cluster assembly accessory protein | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 4e-15
Identities = 29/68 (42%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 1866 VTKKAAKYINKYIQKRGK-GIGLRLGVYNRGCSGLSYKLEYVDEKRKEDQVFKLNGVQIF 1924
+T AAK I + G+ +GLR+GV GCSGL Y LE+ DE ++D+VF+ +GV++
Sbjct: 2 LTDSAAKRIKALLAGEGEPNLGLRVGVKGGGCSGLQYGLEFDDEPNEDDEVFEQDGVKVV 61
Query: 1925 INEKDLLY 1932
++ K L Y
Sbjct: 62 VDPKSLPY 69
|
Proteins in this subfamily appear to be associated with the process of FeS-cluster assembly. The HesB proteins are associated with the nif gene cluster and the Rhizobium gene IscN has been shown to be required for nitrogen fixation. Nitrogenase includes multiple FeS clusters and many genes for their assembly. The E. coli SufA protein is associated with SufS, a NifS homolog and SufD which are involved in the FeS cluster assembly of the FhnF protein. The Azotobacter protein IscA (homologs of which are also found in E.coli) is associated which IscS, another NifS homolog and IscU, a nifU homolog as well as other factors consistent with a role in FeS cluster chemistry. A homolog from Geobacter contains a selenocysteine in place of an otherwise invariant cysteine, further suggesting a role in redox chemistry [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 105 |
| >gnl|CDD|212673 cd10231, YegD_like, Escherichia coli YegD, a putative chaperone protein, and related proteins | Back alignment and domain information |
|---|
Score = 76.0 bits (188), Expect = 7e-14
Identities = 63/249 (25%), Positives = 100/249 (40%), Gaps = 54/249 (21%)
Query: 640 IGIDFGTTNSLVAIVRNNIPE--VLKDKYGYFLIPSIVRY-----LPDGKIYVGKKAKIT 692
+GIDFGT+NS VA+ R+ P L+ PS + + + ++ G+ A I
Sbjct: 1 LGIDFGTSNSAVAVARDGQPRLVPLEGGSTTL--PSALFFPHEESALEREVLFGRAA-IA 57
Query: 693 QNID-PKNT--ISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQI 749
++ P + S+K F+ L I G + E
Sbjct: 58 AYLEGPGEGRLMRSLKSFLGSSL------------------FRETRIFGRRLTFEDLVAR 99
Query: 750 FIT-LKKIAENAVNNRIFGAVITVPAYFNDI--------QRQFTKNAAKLAGLNVLRLLN 800
F+ LK+ AE A+ I VI P +F + + AA+ AG +
Sbjct: 100 FLAELKQRAEAALGAEIDRVVIGRPVHFVGDDEAADAQAEARLRA-AARAAGFKDVEFQY 158
Query: 801 EPTSAAIAY--KLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFK-------VLSVGGDS 851
EP +AA+ Y +L + E + V D+GGGT D S+++ +L+ G
Sbjct: 159 EPIAAALDYEQRLTR---EELVLVVDIGGGTSDFSLVRLGPSRRGRADRRADILAHSGV- 214
Query: 852 NLGGDDFDY 860
+GG DFD
Sbjct: 215 RIGGTDFDR 223
|
This bacterial subfamily includes the uncharacterized Escherichia coli YegD. It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. YegD lacks the SBD. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some family members are not chaperones but instead, function as NEFs for their Hsp70 partners, other family members function as both chaperones and NEFs. Length = 415 |
| >gnl|CDD|212673 cd10231, YegD_like, Escherichia coli YegD, a putative chaperone protein, and related proteins | Back alignment and domain information |
|---|
Score = 76.0 bits (188), Expect = 7e-14
Identities = 63/249 (25%), Positives = 100/249 (40%), Gaps = 54/249 (21%)
Query: 2036 IGIDFGTTNSLVAIVRNNIPE--VLKDKYGYFLIPSIVRY-----LPDGKIYVGKKAKIT 2088
+GIDFGT+NS VA+ R+ P L+ PS + + + ++ G+ A I
Sbjct: 1 LGIDFGTSNSAVAVARDGQPRLVPLEGGSTTL--PSALFFPHEESALEREVLFGRAA-IA 57
Query: 2089 QNID-PKNT--ISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQI 2145
++ P + S+K F+ L I G + E
Sbjct: 58 AYLEGPGEGRLMRSLKSFLGSSL------------------FRETRIFGRRLTFEDLVAR 99
Query: 2146 FIT-LKKIAENAVNNRIFGAVITVPAYFNDI--------QRQFTKNAAKLAGLNVLRLLN 2196
F+ LK+ AE A+ I VI P +F + + AA+ AG +
Sbjct: 100 FLAELKQRAEAALGAEIDRVVIGRPVHFVGDDEAADAQAEARLRA-AARAAGFKDVEFQY 158
Query: 2197 EPTSAAIAY--KLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFK-------VLSVGGDS 2247
EP +AA+ Y +L + E + V D+GGGT D S+++ +L+ G
Sbjct: 159 EPIAAALDYEQRLTR---EELVLVVDIGGGTSDFSLVRLGPSRRGRADRRADILAHSGV- 214
Query: 2248 NLGGDDFDY 2256
+GG DFD
Sbjct: 215 RIGGTDFDR 223
|
This bacterial subfamily includes the uncharacterized Escherichia coli YegD. It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. YegD lacks the SBD. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some family members are not chaperones but instead, function as NEFs for their Hsp70 partners, other family members function as both chaperones and NEFs. Length = 415 |
| >gnl|CDD|178203 PLN02593, PLN02593, adrenodoxin-like ferredoxin protein | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 1e-13
Identities = 30/64 (46%), Positives = 44/64 (68%), Gaps = 2/64 (3%)
Query: 1142 GISLCDALLKNSIFIEHACEKSCACATCHVII--REGFNEINKANEVEEDMLNKAWGLEE 1199
G+SL +A +N I +E ACE S AC+TCHVI+ + +N++ + + E DML+ A+GL E
Sbjct: 20 GMSLLEAAHENDIELEGACEGSLACSTCHVIVMDEKVYNKLPEPTDEENDMLDLAFGLTE 79
Query: 1200 NSRL 1203
SRL
Sbjct: 80 TSRL 83
|
Length = 117 |
| >gnl|CDD|235133 PRK03578, hscB, co-chaperone HscB; Provisional | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 4e-13
Identities = 28/85 (32%), Positives = 44/85 (51%)
Query: 539 DNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKLNGIDLNTKLNLNFSHDFLE 598
D F ++ +++ +T N+AY L+DP R+ YL L G+D+ + N FL
Sbjct: 39 DRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLHLRGVDVQAENNTAMPPAFLM 98
Query: 599 QQMKWRETLSIIKNKKDKVKFMALL 623
QQM+WRE + + +D ALL
Sbjct: 99 QQMEWREAIEDARAARDVDALDALL 123
|
Length = 176 |
| >gnl|CDD|235133 PRK03578, hscB, co-chaperone HscB; Provisional | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 4e-13
Identities = 28/85 (32%), Positives = 44/85 (51%)
Query: 1935 DNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKLNGIDLNTKLNLNFSHDFLE 1994
D F ++ +++ +T N+AY L+DP R+ YL L G+D+ + N FL
Sbjct: 39 DRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLHLRGVDVQAENNTAMPPAFLM 98
Query: 1995 QQMKWRETLSIIKNKKDKVKFMALL 2019
QQM+WRE + + +D ALL
Sbjct: 99 QQMEWREAIEDARAARDVDALDALL 123
|
Length = 176 |
| >gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 1e-12
Identities = 34/157 (21%), Positives = 62/157 (39%), Gaps = 12/157 (7%)
Query: 61 IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN 120
++ T +N A+ G +I H S E G + + +
Sbjct: 20 AVFVPSGTGANEAAL----LALLGPGDEVIVDANGHGSRYWVAA--ELAGAKPVPVPVDD 73
Query: 121 N--GLITLSQLEEKICSDTI-LVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAV 177
G + ++ LEE + L+ + GV+ P+ EI ++ + G++ DAA A
Sbjct: 74 AGYGGLDVAILEELKAKPNVALIVITPNTTSGGVLVPLKEIRKIAKEYGILLLVDAASAG 133
Query: 178 GKIDIN---IQNYKVDLMSFSAHKIYGPKGIGALYIR 211
G I D+++FS HK G +G G + ++
Sbjct: 134 GASPAPGVLIPEGGADVVTFSLHKNLGGEGGGVVIVK 170
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V). Length = 170 |
| >gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 1e-12
Identities = 34/157 (21%), Positives = 62/157 (39%), Gaps = 12/157 (7%)
Query: 1457 IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN 1516
++ T +N A+ G +I H S E G + + +
Sbjct: 20 AVFVPSGTGANEAAL----LALLGPGDEVIVDANGHGSRYWVAA--ELAGAKPVPVPVDD 73
Query: 1517 N--GLITLSQLEEKICSDTI-LVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAV 1573
G + ++ LEE + L+ + GV+ P+ EI ++ + G++ DAA A
Sbjct: 74 AGYGGLDVAILEELKAKPNVALIVITPNTTSGGVLVPLKEIRKIAKEYGILLLVDAASAG 133
Query: 1574 GKIDIN---IQNYKVDLMSFSAHKIYGPKGIGALYIR 1607
G I D+++FS HK G +G G + ++
Sbjct: 134 GASPAPGVLIPEGGADVVTFSLHKNLGGEGGGVVIVK 170
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V). Length = 170 |
| >gnl|CDD|179335 PRK01773, hscB, co-chaperone HscB; Provisional | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 3e-12
Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 539 DNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKLN-GIDLNTKLNLNFSHDFL 597
DNF S +Q +++ S +N A ILKDP LR+ + LN G N + FL
Sbjct: 35 DNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIALNTGEQQNLEEKSTQDMAFL 94
Query: 598 EQQMKWRETLSIIKNKKDKVKFMALLQ 624
QQM+WRE L I+ ++D+ A +
Sbjct: 95 MQQMEWREQLEEIEQQQDEDALTAFSK 121
|
Length = 173 |
| >gnl|CDD|179335 PRK01773, hscB, co-chaperone HscB; Provisional | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 3e-12
Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 1935 DNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKLN-GIDLNTKLNLNFSHDFL 1993
DNF S +Q +++ S +N A ILKDP LR+ + LN G N + FL
Sbjct: 35 DNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIALNTGEQQNLEEKSTQDMAFL 94
Query: 1994 EQQMKWRETLSIIKNKKDKVKFMALLQ 2020
QQM+WRE L I+ ++D+ A +
Sbjct: 95 MQQMEWREQLEEIEQQQDEDALTAFSK 121
|
Length = 173 |
| >gnl|CDD|223154 COG0076, GadB, Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 2e-11
Identities = 50/211 (23%), Positives = 80/211 (37%), Gaps = 32/211 (15%)
Query: 64 TSGATESNNLAIKGA-AHFYKKRGKH---------IITVQTEHKSVLDSIRKLENDGFRV 113
TSG TE+N LA+ A + K+ I+ +T H S + R L G +
Sbjct: 125 TSGGTEANLLALLAARERWRKRALAESGKPGGKPNIVCSETAHFSFEKAARYL---GLGL 181
Query: 114 TYLK-PKNNGLITLSQLEEKICSDTILVSVMLV--NNEIGVIQPILEIGELCRSKGVIFH 170
+ + I + LEE I +TI V+ + G I I E+ ++ G+ H
Sbjct: 182 RRVPTVPTDYRIDVDALEEAIDENTIGGVVVGTAGTTDTGSIDDIEELADIAEEYGIWLH 241
Query: 171 CDAA---QAV------GKIDINIQNYKVDLMSFSAHKI-YGPKGIGALYIRRNPRTRIEA 220
DAA + G+ D ++ VD ++ HK P G G + R+
Sbjct: 242 VDAAFGGFLLPFLEPDGRWDFGLEG--VDSITVDGHKYGLAPIGCGVVLF-RDEEALRRI 298
Query: 221 QIHGGGHEYGLRSGTLATHQIVGMGEAFRLA 251
I +Y L G + I+G +
Sbjct: 299 LIF---ADYYLPGGGIPNFTILGSRPGRQAL 326
|
Length = 460 |
| >gnl|CDD|223154 COG0076, GadB, Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 2e-11
Identities = 50/211 (23%), Positives = 80/211 (37%), Gaps = 32/211 (15%)
Query: 1460 TSGATESNNLAIKGA-AHFYKKRGKH---------IITVQTEHKSVLDSIRKLENDGFRV 1509
TSG TE+N LA+ A + K+ I+ +T H S + R L G +
Sbjct: 125 TSGGTEANLLALLAARERWRKRALAESGKPGGKPNIVCSETAHFSFEKAARYL---GLGL 181
Query: 1510 TYLK-PKNNGLITLSQLEEKICSDTILVSVMLV--NNEIGVIQPILEIGELCRSKGVIFH 1566
+ + I + LEE I +TI V+ + G I I E+ ++ G+ H
Sbjct: 182 RRVPTVPTDYRIDVDALEEAIDENTIGGVVVGTAGTTDTGSIDDIEELADIAEEYGIWLH 241
Query: 1567 CDAA---QAV------GKIDINIQNYKVDLMSFSAHKI-YGPKGIGALYIRRNPRTRIEA 1616
DAA + G+ D ++ VD ++ HK P G G + R+
Sbjct: 242 VDAAFGGFLLPFLEPDGRWDFGLEG--VDSITVDGHKYGLAPIGCGVVLF-RDEEALRRI 298
Query: 1617 QIHGGGHEYGLRSGTLATHQIVGMGEAFRLA 1647
I +Y L G + I+G +
Sbjct: 299 LIF---ADYYLPGGGIPNFTILGSRPGRQAL 326
|
Length = 460 |
| >gnl|CDD|211601 TIGR00714, hscB, Fe-S protein assembly co-chaperone HscB | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 3e-11
Identities = 25/72 (34%), Positives = 36/72 (50%)
Query: 544 KSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKLNGIDLNTKLNLNFSHDFLEQQMKW 603
+Q A+ + ST LN+AY LKDP R+ Y+ KL IDL + F + +K
Sbjct: 25 GMAQEQLAASQQSTTLNQAYHTLKDPLRRAEYMLKLLNIDLTQEQTSERDTAFPMELLKV 84
Query: 604 RETLSIIKNKKD 615
R+ L I+ D
Sbjct: 85 RDELDEIEQMDD 96
|
This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock [Protein fate, Protein folding and stabilization]. Length = 155 |
| >gnl|CDD|211601 TIGR00714, hscB, Fe-S protein assembly co-chaperone HscB | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 3e-11
Identities = 25/72 (34%), Positives = 36/72 (50%)
Query: 1940 KSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKLNGIDLNTKLNLNFSHDFLEQQMKW 1999
+Q A+ + ST LN+AY LKDP R+ Y+ KL IDL + F + +K
Sbjct: 25 GMAQEQLAASQQSTTLNQAYHTLKDPLRRAEYMLKLLNIDLTQEQTSERDTAFPMELLKV 84
Query: 2000 RETLSIIKNKKD 2011
R+ L I+ D
Sbjct: 85 RDELDEIEQMDD 96
|
This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock [Protein fate, Protein folding and stabilization]. Length = 155 |
| >gnl|CDD|185668 PTZ00490, PTZ00490, Ferredoxin superfamily; Provisional | Back alignment and domain information |
|---|
Score = 63.0 bits (153), Expect = 4e-11
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 2538 GISLCDALLKNS-IFIEHACEKSCACATCHVIIREG-FNEINKANEVEEDMLNKAWGLEE 2595
G+SL AL + + +E C CATCHV + F ++ +E EED+L KA ++E
Sbjct: 55 GMSLMHALRDVAKLDVEGTCNGCMQCATCHVYLSAASFKKLGGPSEEEEDVLAKALDVKE 114
Query: 2596 NSRLSCQ 2602
SRL+CQ
Sbjct: 115 TSRLACQ 121
|
Length = 143 |
| >gnl|CDD|179914 PRK05014, hscB, co-chaperone HscB; Provisional | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 1e-10
Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 10/82 (12%)
Query: 539 DNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKLNGIDLNTKLNLNFSH---D 595
D F S+ ++ +V+ + +N AY LK P R+ YL L+G DL + H D
Sbjct: 34 DKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLSLHGFDLA-----HEQHTVRD 88
Query: 596 --FLEQQMKWRETLSIIKNKKD 615
FL +QM+ RE L I+ KD
Sbjct: 89 TAFLMEQMELREELEDIEQSKD 110
|
Length = 171 |
| >gnl|CDD|179914 PRK05014, hscB, co-chaperone HscB; Provisional | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 1e-10
Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 10/82 (12%)
Query: 1935 DNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKLNGIDLNTKLNLNFSH---D 1991
D F S+ ++ +V+ + +N AY LK P R+ YL L+G DL + H D
Sbjct: 34 DKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLSLHGFDLA-----HEQHTVRD 88
Query: 1992 --FLEQQMKWRETLSIIKNKKD 2011
FL +QM+ RE L I+ KD
Sbjct: 89 TAFLMEQMELREELEDIEQSKD 110
|
Length = 171 |
| >gnl|CDD|234554 TIGR04343, egtE_PLP_lyase, ergothioneine biosynthesis PLP-dependent enzyme EgtE | Back alignment and domain information |
|---|
Score = 64.9 bits (158), Expect = 2e-10
Identities = 56/224 (25%), Positives = 101/224 (45%), Gaps = 19/224 (8%)
Query: 36 GWTAEKA----IEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIIT 91
G+ A +A ++ R VA L ++++T+G+ + +L + + + +
Sbjct: 45 GYVAAEAAAPVLDAGRAAVAALTGMPAADVVFTTGSNHALDLLLGS----WPGPSRTVAC 100
Query: 92 VQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTI-LVSVMLVNNEIG 150
+ E+ L +I + GF V L ++G + + + +D LV + +V + G
Sbjct: 101 LPGEYGPNL-AI--MAAHGFEVRELPVDDDGRLDVDGAASALRADPPALVHLTVVGSHRG 157
Query: 151 VIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALY 209
+QP + ELCR+ GV DAAQA+G +D D S+ K + GP+G+G L
Sbjct: 158 TVQPAAAVAELCRAAGVPLVVDAAQALGHLDC---AVGADAYYSSSRKWLAGPRGVGVLA 214
Query: 210 IRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARI 253
+R R+ ++ + LA Q + GEA AR+
Sbjct: 215 VRPELLERLAPRLPPPDWP---EASPLAVAQRLEHGEANIAARV 255
|
Members of this protein family are the pyridoxal phosphate-dependent enzyme EgtE, which catalyzes the final step in the biosynthesis of ergothioneine [Biosynthesis of cofactors, prosthetic groups, and carriers, Glutathione and analogs]. Length = 370 |
| >gnl|CDD|234554 TIGR04343, egtE_PLP_lyase, ergothioneine biosynthesis PLP-dependent enzyme EgtE | Back alignment and domain information |
|---|
Score = 64.9 bits (158), Expect = 2e-10
Identities = 56/224 (25%), Positives = 101/224 (45%), Gaps = 19/224 (8%)
Query: 1432 GWTAEKA----IEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIIT 1487
G+ A +A ++ R VA L ++++T+G+ + +L + + + +
Sbjct: 45 GYVAAEAAAPVLDAGRAAVAALTGMPAADVVFTTGSNHALDLLLGS----WPGPSRTVAC 100
Query: 1488 VQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTI-LVSVMLVNNEIG 1546
+ E+ L +I + GF V L ++G + + + +D LV + +V + G
Sbjct: 101 LPGEYGPNL-AI--MAAHGFEVRELPVDDDGRLDVDGAASALRADPPALVHLTVVGSHRG 157
Query: 1547 VIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALY 1605
+QP + ELCR+ GV DAAQA+G +D D S+ K + GP+G+G L
Sbjct: 158 TVQPAAAVAELCRAAGVPLVVDAAQALGHLDC---AVGADAYYSSSRKWLAGPRGVGVLA 214
Query: 1606 IRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARI 1649
+R R+ ++ + LA Q + GEA AR+
Sbjct: 215 VRPELLERLAPRLPPPDWP---EASPLAVAQRLEHGEANIAARV 255
|
Members of this protein family are the pyridoxal phosphate-dependent enzyme EgtE, which catalyzes the final step in the biosynthesis of ergothioneine [Biosynthesis of cofactors, prosthetic groups, and carriers, Glutathione and analogs]. Length = 370 |
| >gnl|CDD|131052 TIGR01997, sufA_proteo, FeS assembly scaffold SufA | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 5e-09
Identities = 23/66 (34%), Positives = 43/66 (65%)
Query: 471 TKKAAKYINKYIQKRGKGIGLRLGVYNRGCSGLSYKLEYVDEKRKEDQVFKLNGVQIFIN 530
T AA +I + + KR + +G+RLGV GC+G+ Y L+ V E +K+D + + +G ++F+
Sbjct: 6 TDAAAIHIRELVAKRPEAVGIRLGVKKTGCAGMEYVLDLVSEPKKDDDLIEHDGAKVFVA 65
Query: 531 EKDLLY 536
+ +L+
Sbjct: 66 PEAVLF 71
|
This model represents the SufA protein of the SUF system of iron-sulfur cluster biosynthesis. This system performs FeS biosynthesis even during oxidative stress and tends to be absent in obligate anaerobic and microaerophilic bacteria [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 107 |
| >gnl|CDD|131052 TIGR01997, sufA_proteo, FeS assembly scaffold SufA | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 5e-09
Identities = 23/66 (34%), Positives = 43/66 (65%)
Query: 1867 TKKAAKYINKYIQKRGKGIGLRLGVYNRGCSGLSYKLEYVDEKRKEDQVFKLNGVQIFIN 1926
T AA +I + + KR + +G+RLGV GC+G+ Y L+ V E +K+D + + +G ++F+
Sbjct: 6 TDAAAIHIRELVAKRPEAVGIRLGVKKTGCAGMEYVLDLVSEPKKDDDLIEHDGAKVFVA 65
Query: 1927 EKDLLY 1932
+ +L+
Sbjct: 66 PEAVLF 71
|
This model represents the SufA protein of the SUF system of iron-sulfur cluster biosynthesis. This system performs FeS biosynthesis even during oxidative stress and tends to be absent in obligate anaerobic and microaerophilic bacteria [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 107 |
| >gnl|CDD|238126 cd00207, fer2, 2Fe-2S iron-sulfur cluster binding domain | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 6e-09
Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 7/74 (9%)
Query: 2529 NGAIFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVEEDMLN 2588
+G G +L DA + I I ++C AC TC V + EG + + L
Sbjct: 8 SGVEVEVPEGETLLDAAREAGIDIPYSCRAG-ACGTCKVEVVEGEVDQ------SDPSLL 60
Query: 2589 KAWGLEENSRLSCQ 2602
E L+CQ
Sbjct: 61 DEEEAEGGYVLACQ 74
|
Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis and ferredoxins, which participate in redox chains (from bacteria to mammals). Fold is ismilar to thioredoxin. Length = 84 |
| >gnl|CDD|224002 COG1076, DjlA, DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 9e-09
Identities = 31/122 (25%), Positives = 51/122 (41%), Gaps = 3/122 (2%)
Query: 511 DEKRKEDQVFKLNGVQIFINEKDLLYFNDNFIQKSKIDQDASVKLSTYLNKAYSILKDPF 570
R +Q E Y D F + S+ +Q +++ S +N AY LKDP
Sbjct: 8 GLPRAFQIDLDALKLQYR--ELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPL 65
Query: 571 LRSIY-LCKLNGIDLNTKLNLNFSHDFLEQQMKWRETLSIIKNKKDKVKFMALLQISEPD 629
LR+ Y L +G+D + FL +Q + RE L + + D+ + +L +
Sbjct: 66 LRAEYLLALADGLDHAKERQTLRDIAFLLEQSELREELEEAREQLDREDALKVLGVEIKA 125
Query: 630 DI 631
D
Sbjct: 126 DQ 127
|
Length = 174 |
| >gnl|CDD|224002 COG1076, DjlA, DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 9e-09
Identities = 31/122 (25%), Positives = 51/122 (41%), Gaps = 3/122 (2%)
Query: 1907 DEKRKEDQVFKLNGVQIFINEKDLLYFNDNFIQKSKIDQDASVKLSTYLNKAYSILKDPF 1966
R +Q E Y D F + S+ +Q +++ S +N AY LKDP
Sbjct: 8 GLPRAFQIDLDALKLQYR--ELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPL 65
Query: 1967 LRSIY-LCKLNGIDLNTKLNLNFSHDFLEQQMKWRETLSIIKNKKDKVKFMALLQISEPD 2025
LR+ Y L +G+D + FL +Q + RE L + + D+ + +L +
Sbjct: 66 LRAEYLLALADGLDHAKERQTLRDIAFLLEQSELREELEEAREQLDREDALKVLGVEIKA 125
Query: 2026 DI 2027
D
Sbjct: 126 DQ 127
|
Length = 174 |
| >gnl|CDD|185668 PTZ00490, PTZ00490, Ferredoxin superfamily; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 1e-08
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 1142 GISLCDALLKNS-IFIEHACEKSCACATCHVIIREG-FNEINKANEVEEDMLNKAWGLEE 1199
G+SL AL + + +E C CATCHV + F ++ +E EED+L KA ++E
Sbjct: 55 GMSLMHALRDVAKLDVEGTCNGCMQCATCHVYLSAASFKKLGGPSEEEEDVLAKALDVKE 114
Query: 1200 NSRLS 1204
SRL+
Sbjct: 115 TSRLA 119
|
Length = 143 |
| >gnl|CDD|166894 PRK00294, hscB, co-chaperone HscB; Provisional | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 8e-08
Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 539 DNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKLNGIDLNTKLNLNFSHDFLE 598
D F + +Q +++ S LN+AY LK P R+ YL L+G ++ ++ ++ +FL
Sbjct: 37 DRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLALSGHEVPLEVTVH-DPEFLL 95
Query: 599 QQMKWRETLSIIKNKKD 615
QQM+ RE L ++++ D
Sbjct: 96 QQMQLREELEELQDEAD 112
|
Length = 173 |
| >gnl|CDD|166894 PRK00294, hscB, co-chaperone HscB; Provisional | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 8e-08
Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 1935 DNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKLNGIDLNTKLNLNFSHDFLE 1994
D F + +Q +++ S LN+AY LK P R+ YL L+G ++ ++ ++ +FL
Sbjct: 37 DRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLALSGHEVPLEVTVH-DPEFLL 95
Query: 1995 QQMKWRETLSIIKNKKD 2011
QQM+ RE L ++++ D
Sbjct: 96 QQMQLREELEELQDEAD 112
|
Length = 173 |
| >gnl|CDD|181915 PRK09504, sufA, iron-sulfur cluster assembly scaffold protein; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 8e-08
Identities = 23/60 (38%), Positives = 37/60 (61%)
Query: 470 VTKKAAKYINKYIQKRGKGIGLRLGVYNRGCSGLSYKLEYVDEKRKEDQVFKLNGVQIFI 529
+T AA +I + + K+ G+RLGV GC+G Y L+ V E K+D VF+ +G ++F+
Sbjct: 20 LTPAAAAHIRELMAKQPGMKGVRLGVKQTGCAGFGYVLDSVSEPDKDDLVFEHDGAKLFV 79
|
Length = 122 |
| >gnl|CDD|181915 PRK09504, sufA, iron-sulfur cluster assembly scaffold protein; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 8e-08
Identities = 23/60 (38%), Positives = 37/60 (61%)
Query: 1866 VTKKAAKYINKYIQKRGKGIGLRLGVYNRGCSGLSYKLEYVDEKRKEDQVFKLNGVQIFI 1925
+T AA +I + + K+ G+RLGV GC+G Y L+ V E K+D VF+ +G ++F+
Sbjct: 20 LTPAAAAHIRELMAKQPGMKGVRLGVKQTGCAGFGYVLDSVSEPDKDDLVFEHDGAKLFV 79
|
Length = 122 |
| >gnl|CDD|213793 TIGR03301, PhnW-AepZ, 2-aminoethylphosphonate aminotransferase | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 1e-07
Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 3/102 (2%)
Query: 114 TYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEI--GVIQPILEIGELCRSKGVIFHC 171
T L L+++EE + +D + V V++E G++ P+ I ++ RS G +
Sbjct: 101 TDLNFSEYEPPDLNRIEEALAADPDITHVATVHHETTTGILNPLEAIAKVARSHGAVLIV 160
Query: 172 DAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRR 212
DA + G I I+I+ VD + SA+K + G G G + RR
Sbjct: 161 DAMSSFGAIPIDIEELDVDALIASANKCLEGVPGFGFVIARR 202
|
This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level TIGR02326. The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different. Length = 355 |
| >gnl|CDD|213793 TIGR03301, PhnW-AepZ, 2-aminoethylphosphonate aminotransferase | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 1e-07
Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 3/102 (2%)
Query: 1510 TYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEI--GVIQPILEIGELCRSKGVIFHC 1567
T L L+++EE + +D + V V++E G++ P+ I ++ RS G +
Sbjct: 101 TDLNFSEYEPPDLNRIEEALAADPDITHVATVHHETTTGILNPLEAIAKVARSHGAVLIV 160
Query: 1568 DAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRR 1608
DA + G I I+I+ VD + SA+K + G G G + RR
Sbjct: 161 DAMSSFGAIPIDIEELDVDALIASANKCLEGVPGFGFVIARR 202
|
This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level TIGR02326. The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different. Length = 355 |
| >gnl|CDD|129982 TIGR00904, mreB, cell shape determining protein, MreB/Mrl family | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 1e-07
Identities = 66/239 (27%), Positives = 103/239 (43%), Gaps = 56/239 (23%)
Query: 640 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIV--RYLPDGKIY----VGKKAKITQ 693
IGID GT N+LV + I VL + PS+V R D K VG +AK
Sbjct: 5 IGIDLGTANTLVYVKGRGI--VLNE-------PSVVAIRTDRDAKTKSILAVGHEAKEML 55
Query: 694 NIDPKNTISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITL 753
P N I +I R +K + DF+ M+ + FI
Sbjct: 56 GKTPGN-IVAI-----RPMK----DGVIADFEVTEKMI----------------KYFI-- 87
Query: 754 KKIAENAVNNRIFG--AVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKL 811
K++ F VI VP+ ++R+ K +A AG + L+ EP +AAI L
Sbjct: 88 KQVHS---RKSFFKPRIVICVPSGITPVERRAVKESALSAGAREVYLIEEPMAAAIGAGL 144
Query: 812 DKNIFEGIFA-VYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKN 869
+ E + V D+GGGT +++++ G+ S+ +GGD+FD + ++I +
Sbjct: 145 P--VEEPTGSMVVDIGGGTTEVAVISL-GGIVVSRSI----RVGGDEFDEAIINYIRRT 196
|
MreB (mecillinam resistance) in E. coli (also called envB) and the paralogous pair MreB and Mrl of Bacillus subtilis have all been shown to help determine cell shape. This protein is present in a wide variety of bacteria, including spirochetes, but is missing from the Mycoplasmas and from Gram-positive cocci. Most completed bacterial genomes have a single member of this family. In some species it is an essential gene. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 333 |
| >gnl|CDD|129982 TIGR00904, mreB, cell shape determining protein, MreB/Mrl family | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 1e-07
Identities = 66/239 (27%), Positives = 103/239 (43%), Gaps = 56/239 (23%)
Query: 2036 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIV--RYLPDGKIY----VGKKAKITQ 2089
IGID GT N+LV + I VL + PS+V R D K VG +AK
Sbjct: 5 IGIDLGTANTLVYVKGRGI--VLNE-------PSVVAIRTDRDAKTKSILAVGHEAKEML 55
Query: 2090 NIDPKNTISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITL 2149
P N I +I R +K + DF+ M+ + FI
Sbjct: 56 GKTPGN-IVAI-----RPMK----DGVIADFEVTEKMI----------------KYFI-- 87
Query: 2150 KKIAENAVNNRIFG--AVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKL 2207
K++ F VI VP+ ++R+ K +A AG + L+ EP +AAI L
Sbjct: 88 KQVHS---RKSFFKPRIVICVPSGITPVERRAVKESALSAGAREVYLIEEPMAAAIGAGL 144
Query: 2208 DKNIFEGIFA-VYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKN 2265
+ E + V D+GGGT +++++ G+ S+ +GGD+FD + ++I +
Sbjct: 145 P--VEEPTGSMVVDIGGGTTEVAVISL-GGIVVSRSI----RVGGDEFDEAIINYIRRT 196
|
MreB (mecillinam resistance) in E. coli (also called envB) and the paralogous pair MreB and Mrl of Bacillus subtilis have all been shown to help determine cell shape. This protein is present in a wide variety of bacteria, including spirochetes, but is missing from the Mycoplasmas and from Gram-positive cocci. Most completed bacterial genomes have a single member of this family. In some species it is an essential gene. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 333 |
| >gnl|CDD|99743 cd06450, DOPA_deC_like, DOPA decarboxylase family | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 2e-07
Identities = 48/183 (26%), Positives = 68/183 (37%), Gaps = 46/183 (25%)
Query: 62 IWTSGATESNNLAIKGAAHFYKKRGKH----------IITVQTEHKSV-------LDSIR 104
++TSG +ESN LA+ A +KR K I+ H SV +R
Sbjct: 61 VFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQAHVSVEKAAAYLDVKVR 120
Query: 105 KLENDGFRVTYLKPKNNGLITLSQLEEKICSD------TILVSVMLVNNEIGVIQPILEI 158
+ D +G + LE I D I+V + G I P+ EI
Sbjct: 121 LVPVDE----------DGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDPLEEI 170
Query: 159 GELCRSKGVIFHCDAAQAVGKI--------DINIQNYKVDLMSFSAHKIYG--PKGIGAL 208
+L + H DAA + D I+ VD +S HK YG P G A+
Sbjct: 171 ADLAEKYDLWLHVDAAYGGFLLPFPEPRHLDFGIER--VDSISVDPHK-YGLVPLGCSAV 227
Query: 209 YIR 211
+R
Sbjct: 228 LVR 230
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. Length = 345 |
| >gnl|CDD|99743 cd06450, DOPA_deC_like, DOPA decarboxylase family | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 2e-07
Identities = 48/183 (26%), Positives = 68/183 (37%), Gaps = 46/183 (25%)
Query: 1458 IWTSGATESNNLAIKGAAHFYKKRGKH----------IITVQTEHKSV-------LDSIR 1500
++TSG +ESN LA+ A +KR K I+ H SV +R
Sbjct: 61 VFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQAHVSVEKAAAYLDVKVR 120
Query: 1501 KLENDGFRVTYLKPKNNGLITLSQLEEKICSD------TILVSVMLVNNEIGVIQPILEI 1554
+ D +G + LE I D I+V + G I P+ EI
Sbjct: 121 LVPVDE----------DGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDPLEEI 170
Query: 1555 GELCRSKGVIFHCDAAQAVGKI--------DINIQNYKVDLMSFSAHKIYG--PKGIGAL 1604
+L + H DAA + D I+ VD +S HK YG P G A+
Sbjct: 171 ADLAEKYDLWLHVDAAYGGFLLPFPEPRHLDFGIER--VDSISVDPHK-YGLVPLGCSAV 227
Query: 1605 YIR 1607
+R
Sbjct: 228 LVR 230
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. Length = 345 |
| >gnl|CDD|234361 TIGR03812, tyr_de_CO2_Arch, tyrosine decarboxylase MnfA | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 5e-07
Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 5/113 (4%)
Query: 64 TSGATESNNLAIKGAAHFY--KKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN 121
SG TE+N A++ A + +KR +II ++ H S + E G + Y +
Sbjct: 82 VSGGTEANIQAVRAAKNLAREEKRTPNIIVPESAHFSF---EKAAEMLGLELRYAPLDED 138
Query: 122 GLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAA 174
+ + +E+ I +TI + + E+G I I E+ ++ G+ H DAA
Sbjct: 139 YTVDVKDVEDLIDDNTIGIVGIAGTTELGQIDDIEELSKIALENGIYLHVDAA 191
|
Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 373 |
| >gnl|CDD|234361 TIGR03812, tyr_de_CO2_Arch, tyrosine decarboxylase MnfA | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 5e-07
Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 5/113 (4%)
Query: 1460 TSGATESNNLAIKGAAHFY--KKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN 1517
SG TE+N A++ A + +KR +II ++ H S + E G + Y +
Sbjct: 82 VSGGTEANIQAVRAAKNLAREEKRTPNIIVPESAHFSF---EKAAEMLGLELRYAPLDED 138
Query: 1518 GLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAA 1570
+ + +E+ I +TI + + E+G I I E+ ++ G+ H DAA
Sbjct: 139 YTVDVKDVEDLIDDNTIGIVGIAGTTELGQIDDIEELSKIALENGIYLHVDAA 191
|
Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 373 |
| >gnl|CDD|238126 cd00207, fer2, 2Fe-2S iron-sulfur cluster binding domain | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 2e-06
Identities = 18/72 (25%), Positives = 27/72 (37%), Gaps = 7/72 (9%)
Query: 1133 NGAIFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVEEDMLN 1192
+G G +L DA + I I ++C AC TC V + EG + + L
Sbjct: 8 SGVEVEVPEGETLLDAAREAGIDIPYSCRAG-ACGTCKVEVVEGEVDQ------SDPSLL 60
Query: 1193 KAWGLEENSRLS 1204
E L+
Sbjct: 61 DEEEAEGGYVLA 72
|
Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis and ferredoxins, which participate in redox chains (from bacteria to mammals). Fold is ismilar to thioredoxin. Length = 84 |
| >gnl|CDD|223153 COG0075, COG0075, Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 2e-06
Identities = 31/149 (20%), Positives = 61/149 (40%), Gaps = 18/149 (12%)
Query: 124 ITLSQLEEKICSDTILVSVMLVNNEI--GVIQPILEIGELCRSKGVIFHCDAAQAVGKID 181
+ ++EE + D + +V +V+NE GV+ P+ EI + + G + DA ++G
Sbjct: 117 VDPEEVEEALDKDPDIKAVAVVHNETSTGVLNPLKEIAKAAKEHGALLIVDAVSSLGGEP 176
Query: 182 INIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGG-----------GHEY 229
+ + + +D+ + K + P G+ + + IE + H +
Sbjct: 177 LKVDEWGIDVAITGSQKALGAPPGLAFVAVSERALEAIEERKHPSFYLDLKKWLKYMEKK 236
Query: 230 GLRSGTLATHQIVGMGEAFRLARIEMKEE 258
G T + I + EA L + EE
Sbjct: 237 GSTPYTPPVNLIYALREALDL----ILEE 261
|
Length = 383 |
| >gnl|CDD|223153 COG0075, COG0075, Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 2e-06
Identities = 31/149 (20%), Positives = 61/149 (40%), Gaps = 18/149 (12%)
Query: 1520 ITLSQLEEKICSDTILVSVMLVNNEI--GVIQPILEIGELCRSKGVIFHCDAAQAVGKID 1577
+ ++EE + D + +V +V+NE GV+ P+ EI + + G + DA ++G
Sbjct: 117 VDPEEVEEALDKDPDIKAVAVVHNETSTGVLNPLKEIAKAAKEHGALLIVDAVSSLGGEP 176
Query: 1578 INIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGG-----------GHEY 1625
+ + + +D+ + K + P G+ + + IE + H +
Sbjct: 177 LKVDEWGIDVAITGSQKALGAPPGLAFVAVSERALEAIEERKHPSFYLDLKKWLKYMEKK 236
Query: 1626 GLRSGTLATHQIVGMGEAFRLARIEMKEE 1654
G T + I + EA L + EE
Sbjct: 237 GSTPYTPPVNLIYALREALDL----ILEE 261
|
Length = 383 |
| >gnl|CDD|224919 COG2008, GLY1, Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 3e-06
Identities = 44/196 (22%), Positives = 75/196 (38%), Gaps = 43/196 (21%)
Query: 34 IYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQ 93
+YG + +A+L ++ T++N LA+ AAH + G+ +I +
Sbjct: 30 VYG--EDPTTNALEQRIAELF--GKEAALFVPSGTQANQLAL--AAHC--QPGESVICHE 81
Query: 94 TEH--------KSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTI------L 139
T H +KL + P +G +T +E I D I L
Sbjct: 82 TAHIYTDECGAPEFFGGGQKL--------PIVPGADGKLTPEDVEAAIRPDDIHHAPTPL 133
Query: 140 VSVMLVNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQ---AVGKIDINIQNYK--VDL 191
+ E G + P + I +C+ G+ H D A+ A+ + + ++ K VD
Sbjct: 134 AVLENTATEGGTVYPLDELEAISAVCKEHGLPLHMDGARLANALVALGVALKTIKSYVDS 193
Query: 192 MSFSAHKIYGPKGIGA 207
+SF KG GA
Sbjct: 194 VSFC-----LTKGGGA 204
|
Length = 342 |
| >gnl|CDD|224919 COG2008, GLY1, Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 3e-06
Identities = 44/196 (22%), Positives = 75/196 (38%), Gaps = 43/196 (21%)
Query: 1430 IYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQ 1489
+YG + +A+L ++ T++N LA+ AAH + G+ +I +
Sbjct: 30 VYG--EDPTTNALEQRIAELF--GKEAALFVPSGTQANQLAL--AAHC--QPGESVICHE 81
Query: 1490 TEH--------KSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTI------L 1535
T H +KL + P +G +T +E I D I L
Sbjct: 82 TAHIYTDECGAPEFFGGGQKL--------PIVPGADGKLTPEDVEAAIRPDDIHHAPTPL 133
Query: 1536 VSVMLVNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQ---AVGKIDINIQNYK--VDL 1587
+ E G + P + I +C+ G+ H D A+ A+ + + ++ K VD
Sbjct: 134 AVLENTATEGGTVYPLDELEAISAVCKEHGLPLHMDGARLANALVALGVALKTIKSYVDS 193
Query: 1588 MSFSAHKIYGPKGIGA 1603
+SF KG GA
Sbjct: 194 VSFC-----LTKGGGA 204
|
Length = 342 |
| >gnl|CDD|215725 pfam00111, Fer2, 2Fe-2S iron-sulfur cluster binding domain | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 3e-06
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 7/60 (11%)
Query: 2543 DALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVEEDMLNKAWGLEENSRLSCQ 2602
DA + I I ++C C TC V + EG + + +E+D L + + L+CQ
Sbjct: 21 DAAEEAGIDIPYSCRGGG-CGTCAVKVLEG-EVQSDQSFLEDDELAAGYVV-----LACQ 73
|
Length = 77 |
| >gnl|CDD|237409 PRK13520, PRK13520, L-tyrosine decarboxylase; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (123), Expect = 5e-06
Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 19/119 (15%)
Query: 64 TSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKS------VLD-SIRKLE-NDGFRVTY 115
TSG TE+N A++ A + K +I+ ++ H S +L +R+ +D +RV
Sbjct: 82 TSGGTEANIQAVRAARNLAKAEKPNIVVPESAHFSFDKAADMLGVELRRAPLDDDYRVD- 140
Query: 116 LKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAA 174
+ +E+ I +TI + + E+G + PI E+ ++ G+ H DAA
Sbjct: 141 ----------VKAVEDLIDDNTIGIVGIAGTTELGQVDPIPELSKIALENGIFLHVDAA 189
|
Length = 371 |
| >gnl|CDD|237409 PRK13520, PRK13520, L-tyrosine decarboxylase; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (123), Expect = 5e-06
Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 19/119 (15%)
Query: 1460 TSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKS------VLD-SIRKLE-NDGFRVTY 1511
TSG TE+N A++ A + K +I+ ++ H S +L +R+ +D +RV
Sbjct: 82 TSGGTEANIQAVRAARNLAKAEKPNIVVPESAHFSFDKAADMLGVELRRAPLDDDYRVD- 140
Query: 1512 LKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAA 1570
+ +E+ I +TI + + E+G + PI E+ ++ G+ H DAA
Sbjct: 141 ----------VKAVEDLIDDNTIGIVGIAGTTELGQVDPIPELSKIALENGIFLHVDAA 189
|
Length = 371 |
| >gnl|CDD|99744 cd06451, AGAT_like, Alanine-glyoxylate aminotransferase (AGAT) family | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 1e-05
Identities = 39/186 (20%), Positives = 71/186 (38%), Gaps = 19/186 (10%)
Query: 110 GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNE--IGVIQPILEIGELCRSKGV 167
G V ++ ++ ++ E + I +V L +NE GV+ P+ IG L +
Sbjct: 97 GADVDVVEKPWGEAVSPEEIAEALEQHDI-KAVTLTHNETSTGVLNPLEGIGALAKKHDA 155
Query: 168 IFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYG-PKGIGALYIRRNPRTRIEA--QIHG 224
+ DA ++G + + VD+ + K G P G+G + RI+ + G
Sbjct: 156 LLIVDAVSSLGGEPFRMDEWGVDVAYTGSQKALGAPPGLGPIAFSERALERIKKKTKPKG 215
Query: 225 G-------GHEYGLRSGTLAT---HQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLM 274
+G T + + + EA L +E L+ +RL L
Sbjct: 216 FYFDLLLLLKYWGEGYSYPHTPPVNLLYALREALDLIL---EEGLENRWARHRRLAKALR 272
Query: 275 ESIEEI 280
E +E +
Sbjct: 273 EGLEAL 278
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway. Length = 356 |
| >gnl|CDD|99744 cd06451, AGAT_like, Alanine-glyoxylate aminotransferase (AGAT) family | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 1e-05
Identities = 39/186 (20%), Positives = 71/186 (38%), Gaps = 19/186 (10%)
Query: 1506 GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNE--IGVIQPILEIGELCRSKGV 1563
G V ++ ++ ++ E + I +V L +NE GV+ P+ IG L +
Sbjct: 97 GADVDVVEKPWGEAVSPEEIAEALEQHDI-KAVTLTHNETSTGVLNPLEGIGALAKKHDA 155
Query: 1564 IFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYG-PKGIGALYIRRNPRTRIEA--QIHG 1620
+ DA ++G + + VD+ + K G P G+G + RI+ + G
Sbjct: 156 LLIVDAVSSLGGEPFRMDEWGVDVAYTGSQKALGAPPGLGPIAFSERALERIKKKTKPKG 215
Query: 1621 G-------GHEYGLRSGTLAT---HQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLM 1670
+G T + + + EA L +E L+ +RL L
Sbjct: 216 FYFDLLLLLKYWGEGYSYPHTPPVNLLYALREALDLIL---EEGLENRWARHRRLAKALR 272
Query: 1671 ESIEEI 1676
E +E +
Sbjct: 273 EGLEAL 278
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway. Length = 356 |
| >gnl|CDD|213718 TIGR02529, EutJ, ethanolamine utilization protein EutJ family protein | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 2e-05
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 753 LKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLD 812
LK E + + A +P + + N + AG+ VL +L+EPT+AA ++
Sbjct: 49 LKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAAAAVLQIK 108
Query: 813 KNIFEGIFAVYDLGGGTFDISILK 836
AV D+GGGT ISILK
Sbjct: 109 NG------AVVDVGGGTTGISILK 126
|
Length = 239 |
| >gnl|CDD|213718 TIGR02529, EutJ, ethanolamine utilization protein EutJ family protein | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 2e-05
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 2149 LKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLD 2208
LK E + + A +P + + N + AG+ VL +L+EPT+AA ++
Sbjct: 49 LKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAAAAVLQIK 108
Query: 2209 KNIFEGIFAVYDLGGGTFDISILK 2232
AV D+GGGT ISILK
Sbjct: 109 NG------AVVDVGGGTTGISILK 126
|
Length = 239 |
| >gnl|CDD|212668 cd10225, MreB_like, MreB and similar proteins | Back alignment and domain information |
|---|
Score = 48.6 bits (117), Expect = 3e-05
Identities = 96/389 (24%), Positives = 155/389 (39%), Gaps = 110/389 (28%)
Query: 640 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRY-LPDGKIY-VGKKAKITQNIDP 697
IGID GT N+LV + I VL PS+V GKI VG++AK
Sbjct: 1 IGIDLGTANTLVYVKGKGI--VLN-------EPSVVAIDTKTGKILAVGEEAK------- 44
Query: 698 KNTISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIA 757
+ R NI P +K G+ + E + + L+
Sbjct: 45 --------EMLGRTPGNIEV-IRP-----------LK--DGVIADFEATEAM---LRYFI 79
Query: 758 ENAVNNRIFG---AVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKN 814
+ +F VI VP+ +++R+ +AA AG + L+ EP +AAI LD
Sbjct: 80 KKVKGRSLFFRPRVVICVPSGITEVERRAVIDAALHAGAREVYLIEEPLAAAIGAGLD-- 137
Query: 815 IFE--GIFAVYDLGGGTFDISILKFKNGVFKVLSVGG--DSNL---GGDDFDYCLFSWIV 867
IFE G V D+GGGT +I+ V+S+GG S GGDDFD I+
Sbjct: 138 IFEPKGNMVV-DIGGGTTEIA----------VISLGGIVVSKSIRVGGDDFDEA----II 182
Query: 868 KNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNV----KLSDKKIVNIT-IDMK--- 919
+ ++++ Y L+I R +E+ K+ + L +++ + + D+
Sbjct: 183 R--YVRR-KYN----LLIGERTAEEI-------KIEIGSAYPLDEEETMEVKGRDLVTGL 228
Query: 920 -QFFTITQHLVNRTILLSSKALMDANLTIK------------DI--NNVILVGGSTRMKH 964
+ +T V + +++A IK DI ++L GG ++
Sbjct: 229 PRTVEVTSEEVREALKEPLDEIVEA---IKSVLEKTPPELAADILDRGIVLTGGGALLRG 285
Query: 965 IHEGVSNFFKTTLLTSIDPDKAVVFGAAI 993
+ E +S + + DP V GA
Sbjct: 286 LDELISEETGLPVRVAEDPLTCVAKGAGK 314
|
MreB is a bacterial protein which assembles into filaments resembling those of eukaryotic F-actin. It is involved in determining the shape of rod-like bacterial cells, by assembling into large fibrous spirals beneath the cell membrane. MreB has also been implicated in chromosome segregation; specifically MreB is thought to bind to and segregate the replication origin of bacterial chromosomes. Length = 320 |
| >gnl|CDD|212668 cd10225, MreB_like, MreB and similar proteins | Back alignment and domain information |
|---|
Score = 48.6 bits (117), Expect = 3e-05
Identities = 96/389 (24%), Positives = 155/389 (39%), Gaps = 110/389 (28%)
Query: 2036 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRY-LPDGKIY-VGKKAKITQNIDP 2093
IGID GT N+LV + I VL PS+V GKI VG++AK
Sbjct: 1 IGIDLGTANTLVYVKGKGI--VLN-------EPSVVAIDTKTGKILAVGEEAK------- 44
Query: 2094 KNTISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIA 2153
+ R NI P +K G+ + E + + L+
Sbjct: 45 --------EMLGRTPGNIEV-IRP-----------LK--DGVIADFEATEAM---LRYFI 79
Query: 2154 ENAVNNRIFG---AVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKN 2210
+ +F VI VP+ +++R+ +AA AG + L+ EP +AAI LD
Sbjct: 80 KKVKGRSLFFRPRVVICVPSGITEVERRAVIDAALHAGAREVYLIEEPLAAAIGAGLD-- 137
Query: 2211 IFE--GIFAVYDLGGGTFDISILKFKNGVFKVLSVGG--DSNL---GGDDFDYCLFSWIV 2263
IFE G V D+GGGT +I+ V+S+GG S GGDDFD I+
Sbjct: 138 IFEPKGNMVV-DIGGGTTEIA----------VISLGGIVVSKSIRVGGDDFDEA----II 182
Query: 2264 KNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNV----KLSDKKIVNIT-IDMK--- 2315
+ ++++ Y L+I R +E+ K+ + L +++ + + D+
Sbjct: 183 R--YVRR-KYN----LLIGERTAEEI-------KIEIGSAYPLDEEETMEVKGRDLVTGL 228
Query: 2316 -QFFTITQHLVNRTILLSSKALMDANLTIK------------DI--NNVILVGGSTRMKH 2360
+ +T V + +++A IK DI ++L GG ++
Sbjct: 229 PRTVEVTSEEVREALKEPLDEIVEA---IKSVLEKTPPELAADILDRGIVLTGGGALLRG 285
Query: 2361 IHEGVSNFFKTTLLTSIDPDKAVVFGAAI 2389
+ E +S + + DP V GA
Sbjct: 286 LDELISEETGLPVRVAEDPLTCVAKGAGK 314
|
MreB is a bacterial protein which assembles into filaments resembling those of eukaryotic F-actin. It is involved in determining the shape of rod-like bacterial cells, by assembling into large fibrous spirals beneath the cell membrane. MreB has also been implicated in chromosome segregation; specifically MreB is thought to bind to and segregate the replication origin of bacterial chromosomes. Length = 320 |
| >gnl|CDD|224003 COG1077, MreB, Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 4e-05
Identities = 67/241 (27%), Positives = 102/241 (42%), Gaps = 61/241 (25%)
Query: 640 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFL-IPSIVRYLPDGKI----YVGKKAKITQN 694
IGID GT N+LV G L PS+V +GK VG++AK
Sbjct: 9 IGIDLGTANTLVY----------VKGKGIVLNEPSVVAIESEGKTKVVLAVGEEAK---Q 55
Query: 695 IDPKNTISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLK 754
+ + T +I R +K+ F E+ + FI K
Sbjct: 56 MLGR-TPGNIV--AIRPMKDGVIADFEV--------------------TELMLKYFI--K 90
Query: 755 KIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKN 814
K+ +N + VI VP+ D++R+ K AA+ AG + L+ EP +AAI L
Sbjct: 91 KVHKNGSSFPKPRIVICVPSGITDVERRAIKEAAESAGAREVYLIEEPMAAAIGAGLP-- 148
Query: 815 IFEGIFA-VYDLGGGTFDISILKFKNGVFKVLSVGG--DSN---LGGDDFDYCLFSWIVK 868
I E + V D+GGGT +++ V+S+GG S+ +GGD D + ++ K
Sbjct: 149 IMEPTGSMVVDIGGGTTEVA----------VISLGGIVSSSSVRVGGDKMDEAIIVYVRK 198
Query: 869 N 869
Sbjct: 199 K 199
|
Length = 342 |
| >gnl|CDD|224003 COG1077, MreB, Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 4e-05
Identities = 67/241 (27%), Positives = 102/241 (42%), Gaps = 61/241 (25%)
Query: 2036 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFL-IPSIVRYLPDGKI----YVGKKAKITQN 2090
IGID GT N+LV G L PS+V +GK VG++AK
Sbjct: 9 IGIDLGTANTLVY----------VKGKGIVLNEPSVVAIESEGKTKVVLAVGEEAK---Q 55
Query: 2091 IDPKNTISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLK 2150
+ + T +I R +K+ F E+ + FI K
Sbjct: 56 MLGR-TPGNIV--AIRPMKDGVIADFEV--------------------TELMLKYFI--K 90
Query: 2151 KIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKN 2210
K+ +N + VI VP+ D++R+ K AA+ AG + L+ EP +AAI L
Sbjct: 91 KVHKNGSSFPKPRIVICVPSGITDVERRAIKEAAESAGAREVYLIEEPMAAAIGAGLP-- 148
Query: 2211 IFEGIFA-VYDLGGGTFDISILKFKNGVFKVLSVGG--DSN---LGGDDFDYCLFSWIVK 2264
I E + V D+GGGT +++ V+S+GG S+ +GGD D + ++ K
Sbjct: 149 IMEPTGSMVVDIGGGTTEVA----------VISLGGIVSSSSVRVGGDKMDEAIIVYVRK 198
Query: 2265 N 2265
Sbjct: 199 K 199
|
Length = 342 |
| >gnl|CDD|237904 PRK15080, PRK15080, ethanolamine utilization protein EutJ; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 4e-05
Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 753 LKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLD 812
LK E + + A +P ++ + N + AGL V +L+EPT+AA +D
Sbjct: 76 LKATLEEKLGRELTHAATAIPPGTSEGDPRAIINVVESAGLEVTHVLDEPTAAAAVLGID 135
Query: 813 KNIFEGIFAVYDLGGGTFDISILK 836
AV D+GGGT ISILK
Sbjct: 136 NG------AVVDIGGGTTGISILK 153
|
Length = 267 |
| >gnl|CDD|237904 PRK15080, PRK15080, ethanolamine utilization protein EutJ; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 4e-05
Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 2149 LKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLD 2208
LK E + + A +P ++ + N + AGL V +L+EPT+AA +D
Sbjct: 76 LKATLEEKLGRELTHAATAIPPGTSEGDPRAIINVVESAGLEVTHVLDEPTAAAAVLGID 135
Query: 2209 KNIFEGIFAVYDLGGGTFDISILK 2232
AV D+GGGT ISILK
Sbjct: 136 NG------AVVDIGGGTTGISILK 153
|
Length = 267 |
| >gnl|CDD|215725 pfam00111, Fer2, 2Fe-2S iron-sulfur cluster binding domain | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 2e-04
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 1147 DALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVEEDMLNKAWGL 1197
DA + I I ++C C TC V + EG + + +E+D L + +
Sbjct: 21 DAAEEAGIDIPYSCRGGG-CGTCAVKVLEG-EVQSDQSFLEDDELAAGYVV 69
|
Length = 77 |
| >gnl|CDD|115385 pfam06723, MreB_Mbl, MreB/Mbl protein | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 2e-04
Identities = 91/380 (23%), Positives = 149/380 (39%), Gaps = 92/380 (24%)
Query: 640 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGK--IYVGKKAKITQNIDP 697
IGID GT N+LV + K K PS+V K + VG +AK P
Sbjct: 4 IGIDLGTANTLVYV---------KGKGIVLNEPSVVAINTKTKKVLAVGNEAKKMLGRTP 54
Query: 698 KNTISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIA 757
N I ++ R LK+ G+ + E++ + LK
Sbjct: 55 GN-IVAV-----RPLKD-----------------------GVIADFEVTEAM---LKYFI 82
Query: 758 ENAVNNRIFG---AVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKN 814
+ R VI VP+ +++R+ K AAK AG + L+ EP +AAI L
Sbjct: 83 KKVHGRRSLSKPRVVICVPSGITEVERRAVKEAAKNAGAREVFLIEEPMAAAIGAGL--P 140
Query: 815 IFE--GIFAVYDLGGGTFDISILKFKNGVFKVLSVGG--DSN---LGGDDFDYCLFSWIV 867
+ E G V D+GGGT +++ V+S+GG S + GD+ D + +I
Sbjct: 141 VEEPTGNMVV-DIGGGTTEVA----------VISLGGIVTSKSVRVAGDEMDEAIIKYIR 189
Query: 868 KNAFLKKLSYKDVNILMIKSR---EIK-ELLS-YQSSVKLNVKLSDKKIV-----NITID 917
K Y L+I R IK E+ S Y + + +++ + +V I I
Sbjct: 190 KK-------YN----LLIGERTAERIKIEIGSAYPTEEEEKMEIRGRDLVTGLPKTIEIS 238
Query: 918 MKQFFTITQHLVNRTILLSSKALMD--ANLTIKDI--NNVILVGGSTRMKHIHEGVSNFF 973
++ + V+ + + L L DI ++L GG ++ + + +S+
Sbjct: 239 SEEVREALKEPVSAIVEAVKEVLEKTPPEL-AADIVDRGIVLTGGGALLRGLDKLLSDET 297
Query: 974 KTTLLTSIDPDKAVVFGAAI 993
+ + DP V G
Sbjct: 298 GLPVHIAEDPLTCVALGTGK 317
|
This family consists of bacterial MreB and Mbl proteins as well as two related archaeal sequences. MreB is known to be a rod shape-determining protein in bacteria and goes to make up the bacterial cytoskeleton. Genes coding for MreB/Mbl are only found in elongated bacteria, not in coccoid forms. It has been speculated that constituents of the eukaryotic cytoskeleton (tubulin, actin) may have evolved from prokaryotic precursor proteins closely related to today's bacterial proteins FtsZ and MreB/Mbl. Length = 327 |
| >gnl|CDD|115385 pfam06723, MreB_Mbl, MreB/Mbl protein | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 2e-04
Identities = 91/380 (23%), Positives = 149/380 (39%), Gaps = 92/380 (24%)
Query: 2036 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGK--IYVGKKAKITQNIDP 2093
IGID GT N+LV + K K PS+V K + VG +AK P
Sbjct: 4 IGIDLGTANTLVYV---------KGKGIVLNEPSVVAINTKTKKVLAVGNEAKKMLGRTP 54
Query: 2094 KNTISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIA 2153
N I ++ R LK+ G+ + E++ + LK
Sbjct: 55 GN-IVAV-----RPLKD-----------------------GVIADFEVTEAM---LKYFI 82
Query: 2154 ENAVNNRIFG---AVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKN 2210
+ R VI VP+ +++R+ K AAK AG + L+ EP +AAI L
Sbjct: 83 KKVHGRRSLSKPRVVICVPSGITEVERRAVKEAAKNAGAREVFLIEEPMAAAIGAGL--P 140
Query: 2211 IFE--GIFAVYDLGGGTFDISILKFKNGVFKVLSVGG--DSN---LGGDDFDYCLFSWIV 2263
+ E G V D+GGGT +++ V+S+GG S + GD+ D + +I
Sbjct: 141 VEEPTGNMVV-DIGGGTTEVA----------VISLGGIVTSKSVRVAGDEMDEAIIKYIR 189
Query: 2264 KNAFLKKLSYKDVNILMIKSR---EIK-ELLS-YQSSVKLNVKLSDKKIV-----NITID 2313
K Y L+I R IK E+ S Y + + +++ + +V I I
Sbjct: 190 KK-------YN----LLIGERTAERIKIEIGSAYPTEEEEKMEIRGRDLVTGLPKTIEIS 238
Query: 2314 MKQFFTITQHLVNRTILLSSKALMD--ANLTIKDI--NNVILVGGSTRMKHIHEGVSNFF 2369
++ + V+ + + L L DI ++L GG ++ + + +S+
Sbjct: 239 SEEVREALKEPVSAIVEAVKEVLEKTPPEL-AADIVDRGIVLTGGGALLRGLDKLLSDET 297
Query: 2370 KTTLLTSIDPDKAVVFGAAI 2389
+ + DP V G
Sbjct: 298 GLPVHIAEDPLTCVALGTGK 317
|
This family consists of bacterial MreB and Mbl proteins as well as two related archaeal sequences. MreB is known to be a rod shape-determining protein in bacteria and goes to make up the bacterial cytoskeleton. Genes coding for MreB/Mbl are only found in elongated bacteria, not in coccoid forms. It has been speculated that constituents of the eukaryotic cytoskeleton (tubulin, actin) may have evolved from prokaryotic precursor proteins closely related to today's bacterial proteins FtsZ and MreB/Mbl. Length = 327 |
| >gnl|CDD|237563 PRK13928, PRK13928, rod shape-determining protein Mbl; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 4e-04
Identities = 53/201 (26%), Positives = 93/201 (46%), Gaps = 43/201 (21%)
Query: 753 LKKIAENAVNNRIFGA---VITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAY 809
LK A R F +I +P ++++ + AA+ AG + L+ EP +AAI
Sbjct: 80 LKYFINKACGKRFFSKPRIMICIPTGITSVEKRAVREAAEQAGAKKVYLIEEPLAAAIGA 139
Query: 810 KLDKNIFE--GIFAVYDLGGGTFDISILKFKNGVFKVLSVGG---DSNL--GGDDFDYCL 862
LD I + G V D+GGGT DI+ VLS+GG S++ GD FD
Sbjct: 140 GLD--ISQPSGNMVV-DIGGGTTDIA----------VLSLGGIVTSSSIKVAGDKFD--- 183
Query: 863 FSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITIDMKQFF 922
I++ +++K YK L+I R +E+ K+ + + ++++
Sbjct: 184 -EAIIR--YIRK-KYK----LLIGERTAEEI-------KIKIGTAFPGAREEEMEIRGRD 228
Query: 923 TITQHLVNRTILLSSKALMDA 943
+T + +TI ++S+ + +A
Sbjct: 229 LVTG--LPKTITVTSEEIREA 247
|
Length = 336 |
| >gnl|CDD|237563 PRK13928, PRK13928, rod shape-determining protein Mbl; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 4e-04
Identities = 53/201 (26%), Positives = 93/201 (46%), Gaps = 43/201 (21%)
Query: 2149 LKKIAENAVNNRIFGA---VITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAY 2205
LK A R F +I +P ++++ + AA+ AG + L+ EP +AAI
Sbjct: 80 LKYFINKACGKRFFSKPRIMICIPTGITSVEKRAVREAAEQAGAKKVYLIEEPLAAAIGA 139
Query: 2206 KLDKNIFE--GIFAVYDLGGGTFDISILKFKNGVFKVLSVGG---DSNL--GGDDFDYCL 2258
LD I + G V D+GGGT DI+ VLS+GG S++ GD FD
Sbjct: 140 GLD--ISQPSGNMVV-DIGGGTTDIA----------VLSLGGIVTSSSIKVAGDKFD--- 183
Query: 2259 FSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITIDMKQFF 2318
I++ +++K YK L+I R +E+ K+ + + ++++
Sbjct: 184 -EAIIR--YIRK-KYK----LLIGERTAEEI-------KIKIGTAFPGAREEEMEIRGRD 228
Query: 2319 TITQHLVNRTILLSSKALMDA 2339
+T + +TI ++S+ + +A
Sbjct: 229 LVTG--LPKTITVTSEEIREA 247
|
Length = 336 |
| >gnl|CDD|215564 PLN03082, PLN03082, Iron-sulfur cluster assembly; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 6e-04
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 5/62 (8%)
Query: 487 KGIGLRLGVYNRGCSGLSYKLEYVDEKRKEDQVFKLNGVQIFINEKDLLYFNDNFIQKSK 546
+ LRL V GCSG Y E D+ +D+VF+ +GV++ ++ ++ Y +F++ +
Sbjct: 76 EDKMLRLSVETGGCSGFQYVFELDDKTNSDDRVFEKDGVKLVVD--NISY---DFVKGAT 130
Query: 547 ID 548
+D
Sbjct: 131 VD 132
|
Length = 163 |
| >gnl|CDD|215564 PLN03082, PLN03082, Iron-sulfur cluster assembly; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 6e-04
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 5/62 (8%)
Query: 1883 KGIGLRLGVYNRGCSGLSYKLEYVDEKRKEDQVFKLNGVQIFINEKDLLYFNDNFIQKSK 1942
+ LRL V GCSG Y E D+ +D+VF+ +GV++ ++ ++ Y +F++ +
Sbjct: 76 EDKMLRLSVETGGCSGFQYVFELDDKTNSDDRVFEKDGVKLVVD--NISY---DFVKGAT 130
Query: 1943 ID 1944
+D
Sbjct: 131 VD 132
|
Length = 163 |
| >gnl|CDD|216367 pfam01212, Beta_elim_lyase, Beta-eliminating lyase | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 7e-04
Identities = 47/180 (26%), Positives = 68/180 (37%), Gaps = 35/180 (19%)
Query: 110 GFRVTYLKPKNNGLITLSQLEEKICSDTI-------LVSVMLVNNEIG--VIQP--ILEI 158
G + L G + L LE I L+S+ +N G V+ + EI
Sbjct: 95 GAQPVPLPGAEAGKLDLEDLEAAIRPVGDIHFPPTGLISLENTHNSAGGQVVSLEELREI 154
Query: 159 GELCRSKGVIFHCD------AAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGAL---- 208
+ R G+ H D AA A+G I I +Y D +S S K G +G++
Sbjct: 155 RAIAREHGIPLHLDGARLANAAVALGVIVKEITSY-ADSVSMSLSKGLG-APVGSVLAGS 212
Query: 209 --YIRRNPRTRIEAQIHGGGHEYGLR-SGTLATHQIVGMGE-AFRLAR-IEMKEELKRIL 263
+I R R + GG G+R +G LA + + E RL R L L
Sbjct: 213 DDFIAYARRQR---KYLGG----GMRQAGVLAAAGLRALEEGVARLGRDHATARRLAEGL 265
|
Length = 288 |
| >gnl|CDD|216367 pfam01212, Beta_elim_lyase, Beta-eliminating lyase | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 7e-04
Identities = 47/180 (26%), Positives = 68/180 (37%), Gaps = 35/180 (19%)
Query: 1506 GFRVTYLKPKNNGLITLSQLEEKICSDTI-------LVSVMLVNNEIG--VIQP--ILEI 1554
G + L G + L LE I L+S+ +N G V+ + EI
Sbjct: 95 GAQPVPLPGAEAGKLDLEDLEAAIRPVGDIHFPPTGLISLENTHNSAGGQVVSLEELREI 154
Query: 1555 GELCRSKGVIFHCD------AAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGAL---- 1604
+ R G+ H D AA A+G I I +Y D +S S K G +G++
Sbjct: 155 RAIAREHGIPLHLDGARLANAAVALGVIVKEITSY-ADSVSMSLSKGLG-APVGSVLAGS 212
Query: 1605 --YIRRNPRTRIEAQIHGGGHEYGLR-SGTLATHQIVGMGE-AFRLAR-IEMKEELKRIL 1659
+I R R + GG G+R +G LA + + E RL R L L
Sbjct: 213 DDFIAYARRQR---KYLGG----GMRQAGVLAAAGLRALEEGVARLGRDHATARRLAEGL 265
|
Length = 288 |
| >gnl|CDD|225426 COG2871, NqrF, Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 8e-04
Identities = 28/94 (29%), Positives = 40/94 (42%), Gaps = 8/94 (8%)
Query: 2510 KKKFITIKPF-YNMNLDEIKNGAIFNENSGISLCDALLKNSIFIEHACEKSCACATCHVI 2568
K K + + +N D K +G L AL + IFI AC +C C V
Sbjct: 28 KSKLVKVGDITIKINGDPEKT---KTVPAGGKLLGALASSGIFISSACGGGGSCGQCKVR 84
Query: 2569 IREGFNEINKANEVEEDMLNKAWGLEENSRLSCQ 2602
+++G EI E ++K +E RLSCQ
Sbjct: 85 VKKGGGEI---LPTELSHISKR-EAKEGWRLSCQ 114
|
Length = 410 |
| >gnl|CDD|227157 COG4820, EutJ, Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 9e-04
Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 753 LKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLD 812
LK E + R A +P + + N + AGL VL +L+EPT+AA +LD
Sbjct: 81 LKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAAADVLQLD 140
Query: 813 KNIFEGIFAVYDLGGGTFDISILK 836
V D+GGGT ISI+K
Sbjct: 141 DG------GVVDIGGGTTGISIVK 158
|
Length = 277 |
| >gnl|CDD|227157 COG4820, EutJ, Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 9e-04
Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 2149 LKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLD 2208
LK E + R A +P + + N + AGL VL +L+EPT+AA +LD
Sbjct: 81 LKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAAADVLQLD 140
Query: 2209 KNIFEGIFAVYDLGGGTFDISILK 2232
V D+GGGT ISI+K
Sbjct: 141 DG------GVVDIGGGTTGISIVK 158
|
Length = 277 |
| >gnl|CDD|233915 TIGR02539, SepCysS, O-phospho-L-seryl-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 0.002
Identities = 23/107 (21%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 102 SIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGEL 161
+++++ + G + P+ G + + ++E++ +L + V+ E G + ++ ++
Sbjct: 113 NVKEVPHTGHPEYKVDPEGYGEV-IEEVEDESGKPPVLALLTHVDGEYGNLPDAGKVAKV 171
Query: 162 CRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK---IYGPKGI 205
CR KGV + A VG++ ++ + D + S HK GP G+
Sbjct: 172 CREKGVPLLLNCAYTVGRMPVSAKEIGADFIVGSGHKSMAASGPCGV 218
|
Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA. Length = 370 |
| >gnl|CDD|233915 TIGR02539, SepCysS, O-phospho-L-seryl-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 0.002
Identities = 23/107 (21%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 1498 SIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGEL 1557
+++++ + G + P+ G + + ++E++ +L + V+ E G + ++ ++
Sbjct: 113 NVKEVPHTGHPEYKVDPEGYGEV-IEEVEDESGKPPVLALLTHVDGEYGNLPDAGKVAKV 171
Query: 1558 CRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK---IYGPKGI 1601
CR KGV + A VG++ ++ + D + S HK GP G+
Sbjct: 172 CREKGVPLLLNCAYTVGRMPVSAKEIGADFIVGSGHKSMAASGPCGV 218
|
Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA. Length = 370 |
| >gnl|CDD|184403 PRK13929, PRK13929, rod-share determining protein MreBH; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 0.003
Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 15/123 (12%)
Query: 753 LKKIAENAVNN-----RIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAI 807
LK+I + A N R V+ P+ ++R+ +A K G + L+ EP +AAI
Sbjct: 81 LKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISDAVKNCGAKNVHLIEEPVAAAI 140
Query: 808 AYKL--DKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSW 865
L D+ + V D+GGGT +++I+ F GV S+ +GGD D + S+
Sbjct: 141 GADLPVDEPVAN---VVVDIGGGTTEVAIISF-GGVVSCHSI----RIGGDQLDEDIVSF 192
Query: 866 IVK 868
+ K
Sbjct: 193 VRK 195
|
Length = 335 |
| >gnl|CDD|184403 PRK13929, PRK13929, rod-share determining protein MreBH; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 0.003
Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 15/123 (12%)
Query: 2149 LKKIAENAVNN-----RIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAI 2203
LK+I + A N R V+ P+ ++R+ +A K G + L+ EP +AAI
Sbjct: 81 LKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISDAVKNCGAKNVHLIEEPVAAAI 140
Query: 2204 AYKL--DKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSW 2261
L D+ + V D+GGGT +++I+ F GV S+ +GGD D + S+
Sbjct: 141 GADLPVDEPVAN---VVVDIGGGTTEVAIISF-GGVVSCHSI----RIGGDQLDEDIVSF 192
Query: 2262 IVK 2264
+ K
Sbjct: 193 VRK 195
|
Length = 335 |
| >gnl|CDD|130996 TIGR01941, nqrF, NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.004
Identities = 30/94 (31%), Positives = 39/94 (41%), Gaps = 8/94 (8%)
Query: 2510 KKKFITIKPF-YNMNLDEIKNGAIFNENSGISLCDALLKNSIFIEHACEKSCACATCHVI 2568
K K ++ +N DE K+ +G L + L N IFI AC C C V
Sbjct: 23 KSKLVSSGDITIGINDDEEKS---ITVPAGGKLLNTLASNGIFISSACGGGGTCGQCRVR 79
Query: 2569 IREGFNEINKANEVEEDMLNKAWGLEENSRLSCQ 2602
+ EG EI E +K +E RLSCQ
Sbjct: 80 VVEGGGEI---LPTELSHFSKR-EAKEGWRLSCQ 109
|
This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump [Transport and binding proteins, Cations and iron carrying compounds]. Length = 405 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2602 | |||
| KOG0100|consensus | 663 | 100.0 | ||
| KOG0100|consensus | 663 | 100.0 | ||
| KOG0102|consensus | 640 | 100.0 | ||
| PTZ00186 | 657 | heat shock 70 kDa precursor protein; Provisional | 100.0 | |
| PRK13410 | 668 | molecular chaperone DnaK; Provisional | 100.0 | |
| TIGR01991 | 599 | HscA Fe-S protein assembly chaperone HscA. The Hea | 100.0 | |
| PRK05183 | 616 | hscA chaperone protein HscA; Provisional | 100.0 | |
| PRK13411 | 653 | molecular chaperone DnaK; Provisional | 100.0 | |
| KOG0102|consensus | 640 | 100.0 | ||
| PTZ00186 | 657 | heat shock 70 kDa precursor protein; Provisional | 100.0 | |
| PTZ00400 | 663 | DnaK-type molecular chaperone; Provisional | 100.0 | |
| PLN03184 | 673 | chloroplast Hsp70; Provisional | 100.0 | |
| KOG0101|consensus | 620 | 100.0 | ||
| PRK01433 | 595 | hscA chaperone protein HscA; Provisional | 100.0 | |
| PRK00290 | 627 | dnaK molecular chaperone DnaK; Provisional | 100.0 | |
| PTZ00009 | 653 | heat shock 70 kDa protein; Provisional | 100.0 | |
| TIGR01991 | 599 | HscA Fe-S protein assembly chaperone HscA. The Hea | 100.0 | |
| TIGR02350 | 595 | prok_dnaK chaperone protein DnaK. Members of this | 100.0 | |
| PRK13410 | 668 | molecular chaperone DnaK; Provisional | 100.0 | |
| PRK05183 | 616 | hscA chaperone protein HscA; Provisional | 100.0 | |
| CHL00094 | 621 | dnaK heat shock protein 70 | 100.0 | |
| PRK13411 | 653 | molecular chaperone DnaK; Provisional | 100.0 | |
| COG0443 | 579 | DnaK Molecular chaperone [Posttranslational modifi | 100.0 | |
| PTZ00400 | 663 | DnaK-type molecular chaperone; Provisional | 100.0 | |
| PLN03184 | 673 | chloroplast Hsp70; Provisional | 100.0 | |
| PRK01433 | 595 | hscA chaperone protein HscA; Provisional | 100.0 | |
| KOG0101|consensus | 620 | 100.0 | ||
| PRK00290 | 627 | dnaK molecular chaperone DnaK; Provisional | 100.0 | |
| TIGR02350 | 595 | prok_dnaK chaperone protein DnaK. Members of this | 100.0 | |
| PTZ00009 | 653 | heat shock 70 kDa protein; Provisional | 100.0 | |
| CHL00094 | 621 | dnaK heat shock protein 70 | 100.0 | |
| COG0443 | 579 | DnaK Molecular chaperone [Posttranslational modifi | 100.0 | |
| PF00012 | 602 | HSP70: Hsp70 protein; InterPro: IPR013126 Heat sho | 100.0 | |
| PF00012 | 602 | HSP70: Hsp70 protein; InterPro: IPR013126 Heat sho | 100.0 | |
| COG0217 | 241 | Uncharacterized conserved protein [Function unknow | 100.0 | |
| KOG0103|consensus | 727 | 100.0 | ||
| PRK12378 | 235 | hypothetical protein; Provisional | 100.0 | |
| PRK00110 | 245 | hypothetical protein; Validated | 100.0 | |
| KOG0103|consensus | 727 | 100.0 | ||
| TIGR01033 | 238 | DNA-binding regulatory protein, YebC/PmpR family. | 100.0 | |
| PF01709 | 234 | Transcrip_reg: Transcriptional regulator; InterPro | 100.0 | |
| KOG0104|consensus | 902 | 100.0 | ||
| PRK11678 | 450 | putative chaperone; Provisional | 100.0 | |
| KOG0104|consensus | 902 | 100.0 | ||
| PRK11678 | 450 | putative chaperone; Provisional | 100.0 | |
| COG1104 | 386 | NifS Cysteine sulfinate desulfinase/cysteine desul | 100.0 | |
| COG1104 | 386 | NifS Cysteine sulfinate desulfinase/cysteine desul | 100.0 | |
| COG0520 | 405 | csdA Selenocysteine lyase/Cysteine desulfurase [Po | 100.0 | |
| COG0520 | 405 | csdA Selenocysteine lyase/Cysteine desulfurase [Po | 100.0 | |
| KOG1549|consensus | 428 | 100.0 | ||
| KOG1549|consensus | 428 | 100.0 | ||
| PLN02651 | 364 | cysteine desulfurase | 100.0 | |
| KOG2972|consensus | 276 | 100.0 | ||
| TIGR02006 | 402 | IscS cysteine desulfurase IscS. This model represe | 100.0 | |
| TIGR03402 | 379 | FeS_nifS cysteine desulfurase NifS. Members of thi | 100.0 | |
| PLN02651 | 364 | cysteine desulfurase | 100.0 | |
| TIGR02006 | 402 | IscS cysteine desulfurase IscS. This model represe | 100.0 | |
| TIGR03403 | 382 | nifS_epsilon cysteine desulfurase, NifS family, ep | 100.0 | |
| PRK09295 | 406 | bifunctional cysteine desulfurase/selenocysteine l | 100.0 | |
| PLN02855 | 424 | Bifunctional selenocysteine lyase/cysteine desulfu | 100.0 | |
| PRK10874 | 401 | cysteine sulfinate desulfinase; Provisional | 100.0 | |
| TIGR03402 | 379 | FeS_nifS cysteine desulfurase NifS. Members of thi | 100.0 | |
| PRK02948 | 381 | cysteine desulfurase; Provisional | 100.0 | |
| PRK14012 | 404 | cysteine desulfurase; Provisional | 100.0 | |
| TIGR03392 | 398 | FeS_syn_CsdA cysteine desulfurase, catalytic subun | 100.0 | |
| PRK09295 | 406 | bifunctional cysteine desulfurase/selenocysteine l | 100.0 | |
| TIGR03403 | 382 | nifS_epsilon cysteine desulfurase, NifS family, ep | 100.0 | |
| PLN02855 | 424 | Bifunctional selenocysteine lyase/cysteine desulfu | 100.0 | |
| PRK14012 | 404 | cysteine desulfurase; Provisional | 100.0 | |
| PRK10874 | 401 | cysteine sulfinate desulfinase; Provisional | 100.0 | |
| TIGR01979 | 403 | sufS cysteine desulfurases, SufS subfamily. This m | 100.0 | |
| PF00266 | 371 | Aminotran_5: Aminotransferase class-V; InterPro: I | 100.0 | |
| PRK02948 | 381 | cysteine desulfurase; Provisional | 100.0 | |
| TIGR03392 | 398 | FeS_syn_CsdA cysteine desulfurase, catalytic subun | 100.0 | |
| TIGR03235 | 353 | DNA_S_dndA cysteine desulfurase DndA. This model d | 100.0 | |
| PF00266 | 371 | Aminotran_5: Aminotransferase class-V; InterPro: I | 100.0 | |
| TIGR01979 | 403 | sufS cysteine desulfurases, SufS subfamily. This m | 100.0 | |
| PRK13928 | 336 | rod shape-determining protein Mbl; Provisional | 100.0 | |
| PLN02724 | 805 | Molybdenum cofactor sulfurase | 100.0 | |
| TIGR03235 | 353 | DNA_S_dndA cysteine desulfurase DndA. This model d | 100.0 | |
| PRK13929 | 335 | rod-share determining protein MreBH; Provisional | 100.0 | |
| cd06453 | 373 | SufS_like Cysteine desulfurase (SufS)-like. This f | 100.0 | |
| PRK13928 | 336 | rod shape-determining protein Mbl; Provisional | 100.0 | |
| PRK13929 | 335 | rod-share determining protein MreBH; Provisional | 100.0 | |
| PLN02724 | 805 | Molybdenum cofactor sulfurase | 100.0 | |
| TIGR01976 | 397 | am_tr_V_VC1184 cysteine desulfurase family protein | 100.0 | |
| TIGR01977 | 376 | am_tr_V_EF2568 cysteine desulfurase family protein | 100.0 | |
| cd06453 | 373 | SufS_like Cysteine desulfurase (SufS)-like. This f | 100.0 | |
| PRK13927 | 334 | rod shape-determining protein MreB; Provisional | 100.0 | |
| TIGR00904 | 333 | mreB cell shape determining protein, MreB/Mrl fami | 99.98 | |
| TIGR01977 | 376 | am_tr_V_EF2568 cysteine desulfurase family protein | 99.98 | |
| TIGR01976 | 397 | am_tr_V_VC1184 cysteine desulfurase family protein | 99.98 | |
| PRK13927 | 334 | rod shape-determining protein MreB; Provisional | 99.97 | |
| TIGR00904 | 333 | mreB cell shape determining protein, MreB/Mrl fami | 99.97 | |
| PRK13930 | 335 | rod shape-determining protein MreB; Provisional | 99.97 | |
| TIGR01814 | 406 | kynureninase kynureninase. This model describes ky | 99.97 | |
| KOG3361|consensus | 157 | 99.97 | ||
| KOG3361|consensus | 157 | 99.97 | ||
| PRK13930 | 335 | rod shape-determining protein MreB; Provisional | 99.97 | |
| TIGR01814 | 406 | kynureninase kynureninase. This model describes ky | 99.97 | |
| PLN02409 | 401 | serine--glyoxylate aminotransaminase | 99.96 | |
| PLN02409 | 401 | serine--glyoxylate aminotransaminase | 99.96 | |
| cd06451 | 356 | AGAT_like Alanine-glyoxylate aminotransferase (AGA | 99.95 | |
| TIGR02326 | 363 | transamin_PhnW 2-aminoethylphosphonate--pyruvate t | 99.95 | |
| cd06451 | 356 | AGAT_like Alanine-glyoxylate aminotransferase (AGA | 99.95 | |
| TIGR02326 | 363 | transamin_PhnW 2-aminoethylphosphonate--pyruvate t | 99.95 | |
| PF06723 | 326 | MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Ba | 99.95 | |
| cd00611 | 355 | PSAT_like Phosphoserine aminotransferase (PSAT) fa | 99.95 | |
| COG0436 | 393 | Aspartate/tyrosine/aromatic aminotransferase [Amin | 99.95 | |
| PF06723 | 326 | MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Ba | 99.95 | |
| cd00611 | 355 | PSAT_like Phosphoserine aminotransferase (PSAT) fa | 99.94 | |
| COG0075 | 383 | Serine-pyruvate aminotransferase/archaeal aspartat | 99.94 | |
| COG0075 | 383 | Serine-pyruvate aminotransferase/archaeal aspartat | 99.94 | |
| PRK13479 | 368 | 2-aminoethylphosphonate--pyruvate transaminase; Pr | 99.94 | |
| PRK03080 | 378 | phosphoserine aminotransferase; Provisional | 99.94 | |
| TIGR01364 | 349 | serC_1 phosphoserine aminotransferase. This model | 99.94 | |
| PRK13479 | 368 | 2-aminoethylphosphonate--pyruvate transaminase; Pr | 99.94 | |
| PRK02769 | 380 | histidine decarboxylase; Provisional | 99.93 | |
| PRK03080 | 378 | phosphoserine aminotransferase; Provisional | 99.93 | |
| TIGR01364 | 349 | serC_1 phosphoserine aminotransferase. This model | 99.93 | |
| PRK05355 | 360 | 3-phosphoserine/phosphohydroxythreonine aminotrans | 99.93 | |
| PRK02769 | 380 | histidine decarboxylase; Provisional | 99.93 | |
| TIGR03301 | 355 | PhnW-AepZ 2-aminoethylphosphonate aminotransferase | 99.93 | |
| COG0436 | 393 | Aspartate/tyrosine/aromatic aminotransferase [Amin | 99.93 | |
| TIGR01788 | 431 | Glu-decarb-GAD glutamate decarboxylase. This model | 99.93 | |
| COG1077 | 342 | MreB Actin-like ATPase involved in cell morphogene | 99.93 | |
| COG1077 | 342 | MreB Actin-like ATPase involved in cell morphogene | 99.93 | |
| TIGR03301 | 355 | PhnW-AepZ 2-aminoethylphosphonate aminotransferase | 99.93 | |
| PTZ00094 | 452 | serine hydroxymethyltransferase; Provisional | 99.93 | |
| TIGR02529 | 239 | EutJ ethanolamine utilization protein EutJ family | 99.93 | |
| PLN03032 | 374 | serine decarboxylase; Provisional | 99.93 | |
| PRK09331 | 387 | Sep-tRNA:Cys-tRNA synthetase; Provisional | 99.93 | |
| PRK05355 | 360 | 3-phosphoserine/phosphohydroxythreonine aminotrans | 99.92 | |
| PTZ00094 | 452 | serine hydroxymethyltransferase; Provisional | 99.92 | |
| TIGR01788 | 431 | Glu-decarb-GAD glutamate decarboxylase. This model | 99.92 | |
| COG0079 | 356 | HisC Histidinol-phosphate/aromatic aminotransferas | 99.92 | |
| PRK13520 | 371 | L-tyrosine decarboxylase; Provisional | 99.92 | |
| PRK13520 | 371 | L-tyrosine decarboxylase; Provisional | 99.92 | |
| TIGR02529 | 239 | EutJ ethanolamine utilization protein EutJ family | 99.92 | |
| PRK09331 | 387 | Sep-tRNA:Cys-tRNA synthetase; Provisional | 99.92 | |
| PLN03032 | 374 | serine decarboxylase; Provisional | 99.92 | |
| cd06452 | 361 | SepCysS Sep-tRNA:Cys-tRNA synthase. This family be | 99.92 | |
| PRK15080 | 267 | ethanolamine utilization protein EutJ; Provisional | 99.91 | |
| PLN03026 | 380 | histidinol-phosphate aminotransferase; Provisional | 99.91 | |
| COG1168 | 388 | MalY Bifunctional PLP-dependent enzyme with beta-c | 99.91 | |
| PRK15080 | 267 | ethanolamine utilization protein EutJ; Provisional | 99.91 | |
| PRK14807 | 351 | histidinol-phosphate aminotransferase; Provisional | 99.91 | |
| PRK09105 | 370 | putative aminotransferase; Provisional | 99.91 | |
| TIGR01141 | 346 | hisC histidinol-phosphate aminotransferase. Histid | 99.91 | |
| cd06452 | 361 | SepCysS Sep-tRNA:Cys-tRNA synthase. This family be | 99.91 | |
| TIGR03812 | 373 | tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe | 99.91 | |
| PRK01533 | 366 | histidinol-phosphate aminotransferase; Validated | 99.91 | |
| PRK06225 | 380 | aspartate aminotransferase; Provisional | 99.9 | |
| PRK03158 | 359 | histidinol-phosphate aminotransferase; Provisional | 99.9 | |
| TIGR03812 | 373 | tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe | 99.9 | |
| KOG2862|consensus | 385 | 99.9 | ||
| PRK05957 | 389 | aspartate aminotransferase; Provisional | 99.9 | |
| TIGR02539 | 370 | SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation | 99.9 | |
| PRK01688 | 351 | histidinol-phosphate aminotransferase; Provisional | 99.9 | |
| PRK07681 | 399 | aspartate aminotransferase; Provisional | 99.9 | |
| cd06450 | 345 | DOPA_deC_like DOPA decarboxylase family. This fami | 99.9 | |
| cd06450 | 345 | DOPA_deC_like DOPA decarboxylase family. This fami | 99.9 | |
| PRK06207 | 405 | aspartate aminotransferase; Provisional | 99.9 | |
| PRK04870 | 356 | histidinol-phosphate aminotransferase; Provisional | 99.9 | |
| PRK05387 | 353 | histidinol-phosphate aminotransferase; Provisional | 99.9 | |
| PRK06108 | 382 | aspartate aminotransferase; Provisional | 99.9 | |
| cd00613 | 398 | GDC-P Glycine cleavage system P-protein, alpha- an | 99.9 | |
| PRK08056 | 356 | threonine-phosphate decarboxylase; Provisional | 99.9 | |
| TIGR01366 | 361 | serC_3 phosphoserine aminotransferase, putative. T | 99.9 | |
| TIGR01141 | 346 | hisC histidinol-phosphate aminotransferase. Histid | 99.9 | |
| TIGR01366 | 361 | serC_3 phosphoserine aminotransferase, putative. T | 99.9 | |
| PRK07324 | 373 | transaminase; Validated | 99.9 | |
| PRK13355 | 517 | bifunctional HTH-domain containing protein/aminotr | 99.9 | |
| KOG2862|consensus | 385 | 99.89 | ||
| PRK06225 | 380 | aspartate aminotransferase; Provisional | 99.89 | |
| COG1168 | 388 | MalY Bifunctional PLP-dependent enzyme with beta-c | 99.89 | |
| PLN00145 | 430 | tyrosine/nicotianamine aminotransferase; Provision | 99.89 | |
| PRK08960 | 387 | hypothetical protein; Provisional | 99.89 | |
| PRK02731 | 367 | histidinol-phosphate aminotransferase; Validated | 99.89 | |
| PRK00950 | 361 | histidinol-phosphate aminotransferase; Validated | 99.89 | |
| PLN03026 | 380 | histidinol-phosphate aminotransferase; Provisional | 99.89 | |
| PRK07681 | 399 | aspartate aminotransferase; Provisional | 99.89 | |
| PRK14807 | 351 | histidinol-phosphate aminotransferase; Provisional | 99.89 | |
| COG3844 | 407 | Kynureninase [Amino acid transport and metabolism] | 99.89 | |
| PRK07324 | 373 | transaminase; Validated | 99.89 | |
| cd00613 | 398 | GDC-P Glycine cleavage system P-protein, alpha- an | 99.89 | |
| TIGR01437 | 363 | selA_rel uncharacterized pyridoxal phosphate-depen | 99.89 | |
| PTZ00377 | 481 | alanine aminotransferase; Provisional | 99.89 | |
| PRK06207 | 405 | aspartate aminotransferase; Provisional | 99.89 | |
| PRK13355 | 517 | bifunctional HTH-domain containing protein/aminotr | 99.89 | |
| PRK01533 | 366 | histidinol-phosphate aminotransferase; Validated | 99.89 | |
| TIGR03540 | 383 | DapC_direct LL-diaminopimelate aminotransferase. T | 99.89 | |
| KOG0257|consensus | 420 | 99.89 | ||
| TIGR03537 | 350 | DapC succinyldiaminopimelate transaminase. Note: t | 99.89 | |
| PRK04635 | 354 | histidinol-phosphate aminotransferase; Provisional | 99.89 | |
| PRK05957 | 389 | aspartate aminotransferase; Provisional | 99.89 | |
| TIGR02539 | 370 | SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation | 99.89 | |
| KOG0257|consensus | 420 | 99.89 | ||
| cd06454 | 349 | KBL_like KBL_like; this family belongs to the pyri | 99.89 | |
| PLN02187 | 462 | rooty/superroot1 | 99.89 | |
| COG0079 | 356 | HisC Histidinol-phosphate/aromatic aminotransferas | 99.89 | |
| PRK06108 | 382 | aspartate aminotransferase; Provisional | 99.89 | |
| PRK03158 | 359 | histidinol-phosphate aminotransferase; Provisional | 99.89 | |
| PLN00145 | 430 | tyrosine/nicotianamine aminotransferase; Provision | 99.89 | |
| PRK09105 | 370 | putative aminotransferase; Provisional | 99.89 | |
| PRK09276 | 385 | LL-diaminopimelate aminotransferase; Provisional | 99.88 | |
| PRK08361 | 391 | aspartate aminotransferase; Provisional | 99.88 | |
| PRK07908 | 349 | hypothetical protein; Provisional | 99.88 | |
| PLN00175 | 413 | aminotransferase family protein; Provisional | 99.88 | |
| TIGR01822 | 393 | 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig | 99.88 | |
| PRK08153 | 369 | histidinol-phosphate aminotransferase; Provisional | 99.88 | |
| PLN00175 | 413 | aminotransferase family protein; Provisional | 99.88 | |
| PRK06348 | 384 | aspartate aminotransferase; Provisional | 99.88 | |
| TIGR01437 | 363 | selA_rel uncharacterized pyridoxal phosphate-depen | 99.88 | |
| PRK08960 | 387 | hypothetical protein; Provisional | 99.88 | |
| PRK07682 | 378 | hypothetical protein; Validated | 99.88 | |
| PTZ00377 | 481 | alanine aminotransferase; Provisional | 99.88 | |
| PRK05942 | 394 | aspartate aminotransferase; Provisional | 99.88 | |
| PRK05166 | 371 | histidinol-phosphate aminotransferase; Provisional | 99.88 | |
| PRK04366 | 481 | glycine dehydrogenase subunit 2; Validated | 99.88 | |
| PRK05387 | 353 | histidinol-phosphate aminotransferase; Provisional | 99.88 | |
| COG0399 | 374 | WecE Predicted pyridoxal phosphate-dependent enzym | 99.88 | |
| PRK07366 | 388 | succinyldiaminopimelate transaminase; Validated | 99.88 | |
| PLN02187 | 462 | rooty/superroot1 | 99.88 | |
| TIGR01822 | 393 | 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig | 99.88 | |
| PRK00451 | 447 | glycine dehydrogenase subunit 1; Validated | 99.88 | |
| PRK09276 | 385 | LL-diaminopimelate aminotransferase; Provisional | 99.88 | |
| PRK06358 | 354 | threonine-phosphate decarboxylase; Provisional | 99.88 | |
| PRK04870 | 356 | histidinol-phosphate aminotransferase; Provisional | 99.88 | |
| PRK14809 | 357 | histidinol-phosphate aminotransferase; Provisional | 99.88 | |
| PRK08056 | 356 | threonine-phosphate decarboxylase; Provisional | 99.88 | |
| PRK08912 | 387 | hypothetical protein; Provisional | 99.87 | |
| PTZ00433 | 412 | tyrosine aminotransferase; Provisional | 99.87 | |
| TIGR03540 | 383 | DapC_direct LL-diaminopimelate aminotransferase. T | 99.87 | |
| PRK05937 | 370 | 8-amino-7-oxononanoate synthase; Provisional | 99.87 | |
| PRK05942 | 394 | aspartate aminotransferase; Provisional | 99.87 | |
| cd06454 | 349 | KBL_like KBL_like; this family belongs to the pyri | 99.87 | |
| PRK08361 | 391 | aspartate aminotransferase; Provisional | 99.87 | |
| PRK00950 | 361 | histidinol-phosphate aminotransferase; Validated | 99.87 | |
| PRK12414 | 384 | putative aminotransferase; Provisional | 99.87 | |
| TIGR03537 | 350 | DapC succinyldiaminopimelate transaminase. Note: t | 99.87 | |
| PLN00143 | 409 | tyrosine/nicotianamine aminotransferase; Provision | 99.87 | |
| PRK08068 | 389 | transaminase; Reviewed | 99.87 | |
| COG0399 | 374 | WecE Predicted pyridoxal phosphate-dependent enzym | 99.87 | |
| PRK07337 | 388 | aminotransferase; Validated | 99.87 | |
| PRK02731 | 367 | histidinol-phosphate aminotransferase; Validated | 99.87 | |
| PRK07568 | 397 | aspartate aminotransferase; Provisional | 99.87 | |
| PRK05764 | 393 | aspartate aminotransferase; Provisional | 99.87 | |
| PRK07392 | 360 | threonine-phosphate decarboxylase; Validated | 99.87 | |
| PLN02656 | 409 | tyrosine transaminase | 99.87 | |
| PRK08363 | 398 | alanine aminotransferase; Validated | 99.87 | |
| PLN02656 | 409 | tyrosine transaminase | 99.87 | |
| PRK04366 | 481 | glycine dehydrogenase subunit 2; Validated | 99.87 | |
| PRK03321 | 352 | putative aminotransferase; Provisional | 99.87 | |
| PRK09147 | 396 | succinyldiaminopimelate transaminase; Provisional | 99.87 | |
| PRK04635 | 354 | histidinol-phosphate aminotransferase; Provisional | 99.87 | |
| PRK06348 | 384 | aspartate aminotransferase; Provisional | 99.87 | |
| PRK07683 | 387 | aminotransferase A; Validated | 99.87 | |
| PRK01688 | 351 | histidinol-phosphate aminotransferase; Provisional | 99.87 | |
| PRK06290 | 410 | aspartate aminotransferase; Provisional | 99.87 | |
| PRK05764 | 393 | aspartate aminotransferase; Provisional | 99.87 | |
| PRK07366 | 388 | succinyldiaminopimelate transaminase; Validated | 99.87 | |
| PRK07337 | 388 | aminotransferase; Validated | 99.87 | |
| PRK15481 | 431 | transcriptional regulatory protein PtsJ; Provision | 99.87 | |
| PRK07908 | 349 | hypothetical protein; Provisional | 99.87 | |
| PRK07682 | 378 | hypothetical protein; Validated | 99.87 | |
| KOG0259|consensus | 447 | 99.87 | ||
| PRK00451 | 447 | glycine dehydrogenase subunit 1; Validated | 99.86 | |
| PRK03317 | 368 | histidinol-phosphate aminotransferase; Provisional | 99.86 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.86 | |
| PRK09082 | 386 | methionine aminotransferase; Validated | 99.86 | |
| PRK09147 | 396 | succinyldiaminopimelate transaminase; Provisional | 99.86 | |
| TIGR01265 | 403 | tyr_nico_aTase tyrosine/nicotianamine aminotransfe | 99.86 | |
| PLN00143 | 409 | tyrosine/nicotianamine aminotransferase; Provision | 99.86 | |
| PRK04781 | 364 | histidinol-phosphate aminotransferase; Provisional | 99.86 | |
| TIGR01264 | 401 | tyr_amTase_E tyrosine aminotransferase, eukaryotic | 99.86 | |
| PRK08912 | 387 | hypothetical protein; Provisional | 99.86 | |
| TIGR03538 | 393 | DapC_gpp succinyldiaminopimelate transaminase. Thi | 99.86 | |
| PRK08363 | 398 | alanine aminotransferase; Validated | 99.86 | |
| PRK02610 | 374 | histidinol-phosphate aminotransferase; Provisional | 99.86 | |
| COG3844 | 407 | Kynureninase [Amino acid transport and metabolism] | 99.86 | |
| PRK07309 | 391 | aromatic amino acid aminotransferase; Validated | 99.86 | |
| PRK06107 | 402 | aspartate aminotransferase; Provisional | 99.86 | |
| PRK06290 | 410 | aspartate aminotransferase; Provisional | 99.86 | |
| PRK07550 | 386 | hypothetical protein; Provisional | 99.86 | |
| PTZ00433 | 412 | tyrosine aminotransferase; Provisional | 99.86 | |
| cd00616 | 352 | AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa | 99.86 | |
| PRK14809 | 357 | histidinol-phosphate aminotransferase; Provisional | 99.86 | |
| PRK09265 | 404 | aminotransferase AlaT; Validated | 99.86 | |
| PRK07179 | 407 | hypothetical protein; Provisional | 99.86 | |
| PRK05166 | 371 | histidinol-phosphate aminotransferase; Provisional | 99.86 | |
| TIGR00858 | 360 | bioF 8-amino-7-oxononanoate synthase. This model r | 99.86 | |
| PRK06358 | 354 | threonine-phosphate decarboxylase; Provisional | 99.86 | |
| TIGR01265 | 403 | tyr_nico_aTase tyrosine/nicotianamine aminotransfe | 99.86 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.86 | |
| PRK08153 | 369 | histidinol-phosphate aminotransferase; Provisional | 99.86 | |
| PRK09148 | 405 | aminotransferase; Validated | 99.85 | |
| PRK12414 | 384 | putative aminotransferase; Provisional | 99.85 | |
| PRK06107 | 402 | aspartate aminotransferase; Provisional | 99.85 | |
| PRK11658 | 379 | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin | 99.85 | |
| TIGR01264 | 401 | tyr_amTase_E tyrosine aminotransferase, eukaryotic | 99.85 | |
| PRK09265 | 404 | aminotransferase AlaT; Validated | 99.85 | |
| PRK15481 | 431 | transcriptional regulatory protein PtsJ; Provision | 99.85 | |
| cd00616 | 352 | AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa | 99.85 | |
| PRK09082 | 386 | methionine aminotransferase; Validated | 99.85 | |
| PRK07777 | 387 | aminotransferase; Validated | 99.85 | |
| cd00378 | 402 | SHMT Serine-glycine hydroxymethyltransferase (SHMT | 99.85 | |
| PRK07683 | 387 | aminotransferase A; Validated | 99.85 | |
| PRK08068 | 389 | transaminase; Reviewed | 99.85 | |
| PRK07568 | 397 | aspartate aminotransferase; Provisional | 99.85 | |
| PRK03967 | 337 | histidinol-phosphate aminotransferase; Provisional | 99.85 | |
| TIGR03538 | 393 | DapC_gpp succinyldiaminopimelate transaminase. Thi | 99.85 | |
| PLN02376 | 496 | 1-aminocyclopropane-1-carboxylate synthase | 99.85 | |
| PRK13238 | 460 | tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d | 99.85 | |
| PRK06425 | 332 | histidinol-phosphate aminotransferase; Validated | 99.85 | |
| PRK11658 | 379 | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin | 99.85 | |
| PRK07179 | 407 | hypothetical protein; Provisional | 99.85 | |
| PRK05937 | 370 | 8-amino-7-oxononanoate synthase; Provisional | 99.85 | |
| PRK07550 | 386 | hypothetical protein; Provisional | 99.85 | |
| PRK00011 | 416 | glyA serine hydroxymethyltransferase; Reviewed | 99.85 | |
| PRK08636 | 403 | aspartate aminotransferase; Provisional | 99.85 | |
| PLN02721 | 353 | threonine aldolase | 99.85 | |
| PF00155 | 363 | Aminotran_1_2: Aminotransferase class I and II 1-a | 99.85 | |
| PRK06855 | 433 | aminotransferase; Validated | 99.85 | |
| PLN02231 | 534 | alanine transaminase | 99.85 | |
| PRK14808 | 335 | histidinol-phosphate aminotransferase; Provisional | 99.85 | |
| PRK09148 | 405 | aminotransferase; Validated | 99.85 | |
| cd00378 | 402 | SHMT Serine-glycine hydroxymethyltransferase (SHMT | 99.85 | |
| PRK00011 | 416 | glyA serine hydroxymethyltransferase; Reviewed | 99.85 | |
| PRK05958 | 385 | 8-amino-7-oxononanoate synthase; Reviewed | 99.84 | |
| PRK03321 | 352 | putative aminotransferase; Provisional | 99.84 | |
| PRK08636 | 403 | aspartate aminotransferase; Provisional | 99.84 | |
| PRK07309 | 391 | aromatic amino acid aminotransferase; Validated | 99.84 | |
| cd00609 | 350 | AAT_like Aspartate aminotransferase family. This f | 99.84 | |
| KOG0259|consensus | 447 | 99.84 | ||
| PLN02672 | 1082 | methionine S-methyltransferase | 99.84 | |
| PRK08064 | 390 | cystathionine beta-lyase; Provisional | 99.84 | |
| PRK07392 | 360 | threonine-phosphate decarboxylase; Validated | 99.84 | |
| PRK06855 | 433 | aminotransferase; Validated | 99.84 | |
| TIGR03588 | 380 | PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin | 99.84 | |
| PRK06836 | 394 | aspartate aminotransferase; Provisional | 99.84 | |
| PRK11325 | 127 | scaffold protein; Provisional | 99.84 | |
| PLN02450 | 468 | 1-aminocyclopropane-1-carboxylate synthase | 99.84 | |
| PRK03317 | 368 | histidinol-phosphate aminotransferase; Provisional | 99.84 | |
| PRK07777 | 387 | aminotransferase; Validated | 99.84 | |
| PRK04781 | 364 | histidinol-phosphate aminotransferase; Provisional | 99.84 | |
| PRK02610 | 374 | histidinol-phosphate aminotransferase; Provisional | 99.84 | |
| PLN02376 | 496 | 1-aminocyclopropane-1-carboxylate synthase | 99.84 | |
| PRK08354 | 311 | putative aminotransferase; Provisional | 99.84 | |
| TIGR00858 | 360 | bioF 8-amino-7-oxononanoate synthase. This model r | 99.84 | |
| PLN02483 | 489 | serine palmitoyltransferase | 99.84 | |
| cd06502 | 338 | TA_like Low-specificity threonine aldolase (TA). T | 99.84 | |
| PLN02450 | 468 | 1-aminocyclopropane-1-carboxylate synthase | 99.83 | |
| PLN02231 | 534 | alanine transaminase | 99.83 | |
| PRK06836 | 394 | aspartate aminotransferase; Provisional | 99.83 | |
| PRK13580 | 493 | serine hydroxymethyltransferase; Provisional | 99.83 | |
| TIGR01140 | 330 | L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy | 99.83 | |
| PRK05839 | 374 | hypothetical protein; Provisional | 99.83 | |
| COG0822 | 150 | IscU NifU homolog involved in Fe-S cluster formati | 99.83 | |
| TIGR02379 | 376 | ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | 99.83 | |
| COG0822 | 150 | IscU NifU homolog involved in Fe-S cluster formati | 99.83 | |
| TIGR03588 | 380 | PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin | 99.83 | |
| PRK08133 | 390 | O-succinylhomoserine sulfhydrylase; Validated | 99.83 | |
| PLN02721 | 353 | threonine aldolase | 99.83 | |
| PRK06425 | 332 | histidinol-phosphate aminotransferase; Validated | 99.83 | |
| PRK07590 | 409 | L,L-diaminopimelate aminotransferase; Validated | 99.83 | |
| PRK08134 | 433 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.83 | |
| PLN02452 | 365 | phosphoserine transaminase | 99.83 | |
| TIGR01329 | 378 | cysta_beta_ly_E cystathionine beta-lyase, eukaryot | 99.83 | |
| TIGR02379 | 376 | ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | 99.83 | |
| TIGR01174 | 371 | ftsA cell division protein FtsA. This bacterial ce | 99.83 | |
| PLN02271 | 586 | serine hydroxymethyltransferase | 99.83 | |
| PLN02452 | 365 | phosphoserine transaminase | 99.83 | |
| PF00155 | 363 | Aminotran_1_2: Aminotransferase class I and II 1-a | 99.82 | |
| TIGR03542 | 402 | DAPAT_plant LL-diaminopimelate aminotransferase. T | 99.82 | |
| PLN02483 | 489 | serine palmitoyltransferase | 99.82 | |
| PRK05839 | 374 | hypothetical protein; Provisional | 99.82 | |
| PRK11325 | 127 | scaffold protein; Provisional | 99.82 | |
| PRK09275 | 527 | aspartate aminotransferase; Provisional | 99.82 | |
| PRK06767 | 386 | methionine gamma-lyase; Provisional | 99.82 | |
| PRK05958 | 385 | 8-amino-7-oxononanoate synthase; Reviewed | 99.82 | |
| PRK07865 | 364 | N-succinyldiaminopimelate aminotransferase; Review | 99.82 | |
| PRK13392 | 410 | 5-aminolevulinate synthase; Provisional | 99.82 | |
| TIGR01825 | 385 | gly_Cac_T_rel pyridoxal phosphate-dependent acyltr | 99.82 | |
| PRK06939 | 397 | 2-amino-3-ketobutyrate coenzyme A ligase; Provisio | 99.82 | |
| PLN02607 | 447 | 1-aminocyclopropane-1-carboxylate synthase | 99.82 | |
| PRK03967 | 337 | histidinol-phosphate aminotransferase; Provisional | 99.82 | |
| TIGR03539 | 357 | DapC_actino succinyldiaminopimelate transaminase. | 99.82 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.82 | |
| PRK08175 | 395 | aminotransferase; Validated | 99.82 | |
| PRK06959 | 339 | putative threonine-phosphate decarboxylase; Provis | 99.82 | |
| PRK08354 | 311 | putative aminotransferase; Provisional | 99.82 | |
| cd00609 | 350 | AAT_like Aspartate aminotransferase family. This f | 99.82 | |
| PRK09472 | 420 | ftsA cell division protein FtsA; Reviewed | 99.82 | |
| TIGR03539 | 357 | DapC_actino succinyldiaminopimelate transaminase. | 99.82 | |
| PRK08064 | 390 | cystathionine beta-lyase; Provisional | 99.82 | |
| TIGR01821 | 402 | 5aminolev_synth 5-aminolevulinic acid synthase. Th | 99.82 | |
| PRK07865 | 364 | N-succinyldiaminopimelate aminotransferase; Review | 99.82 | |
| PLN02263 | 470 | serine decarboxylase | 99.82 | |
| cd06502 | 338 | TA_like Low-specificity threonine aldolase (TA). T | 99.82 | |
| TIGR01999 | 124 | iscU FeS cluster assembly scaffold IscU. This mode | 99.82 | |
| PRK08134 | 433 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.82 | |
| PLN02822 | 481 | serine palmitoyltransferase | 99.81 | |
| PF01041 | 363 | DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe | 99.81 | |
| PRK08249 | 398 | cystathionine gamma-synthase; Provisional | 99.81 | |
| PRK06939 | 397 | 2-amino-3-ketobutyrate coenzyme A ligase; Provisio | 99.81 | |
| PRK05968 | 389 | hypothetical protein; Provisional | 99.81 | |
| PRK08175 | 395 | aminotransferase; Validated | 99.81 | |
| TIGR01140 | 330 | L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy | 99.81 | |
| PRK09275 | 527 | aspartate aminotransferase; Provisional | 99.81 | |
| PRK08861 | 388 | cystathionine gamma-synthase; Provisional | 99.81 | |
| PRK14808 | 335 | histidinol-phosphate aminotransferase; Provisional | 99.81 | |
| PF01041 | 363 | DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe | 99.81 | |
| PRK06234 | 400 | methionine gamma-lyase; Provisional | 99.81 | |
| PRK09064 | 407 | 5-aminolevulinate synthase; Validated | 99.81 | |
| TIGR01324 | 377 | cysta_beta_ly_B cystathionine beta-lyase, bacteria | 99.81 | |
| TIGR01999 | 124 | iscU FeS cluster assembly scaffold IscU. This mode | 99.81 | |
| TIGR01825 | 385 | gly_Cac_T_rel pyridoxal phosphate-dependent acyltr | 99.8 | |
| TIGR01365 | 374 | serC_2 phosphoserine aminotransferase, Methanosarc | 99.8 | |
| PLN02607 | 447 | 1-aminocyclopropane-1-carboxylate synthase | 99.8 | |
| PRK07590 | 409 | L,L-diaminopimelate aminotransferase; Validated | 99.8 | |
| PRK13238 | 460 | tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d | 99.8 | |
| PRK08133 | 390 | O-succinylhomoserine sulfhydrylase; Validated | 99.8 | |
| TIGR01174 | 371 | ftsA cell division protein FtsA. This bacterial ce | 99.8 | |
| PLN02263 | 470 | serine decarboxylase | 99.8 | |
| PRK11706 | 375 | TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio | 99.8 | |
| PRK13392 | 410 | 5-aminolevulinate synthase; Provisional | 99.8 | |
| TIGR03799 | 522 | NOD_PanD_pyr putative pyridoxal-dependent aspartat | 99.8 | |
| PRK07504 | 398 | O-succinylhomoserine sulfhydrylase; Reviewed | 99.8 | |
| TIGR03799 | 522 | NOD_PanD_pyr putative pyridoxal-dependent aspartat | 99.8 | |
| PRK06767 | 386 | methionine gamma-lyase; Provisional | 99.8 | |
| PRK08045 | 386 | cystathionine gamma-synthase; Provisional | 99.8 | |
| TIGR01329 | 378 | cysta_beta_ly_E cystathionine beta-lyase, eukaryot | 99.8 | |
| TIGR01365 | 374 | serC_2 phosphoserine aminotransferase, Methanosarc | 99.8 | |
| TIGR03801 | 521 | asp_4_decarbox aspartate 4-decarboxylase. This enz | 99.8 | |
| PRK13393 | 406 | 5-aminolevulinate synthase; Provisional | 99.8 | |
| PRK11706 | 375 | TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio | 99.8 | |
| PRK05664 | 330 | threonine-phosphate decarboxylase; Reviewed | 99.8 | |
| PRK08776 | 405 | cystathionine gamma-synthase; Provisional | 99.8 | |
| PRK01773 | 173 | hscB co-chaperone HscB; Provisional | 99.8 | |
| TIGR03542 | 402 | DAPAT_plant LL-diaminopimelate aminotransferase. T | 99.8 | |
| TIGR01821 | 402 | 5aminolev_synth 5-aminolevulinic acid synthase. Th | 99.8 | |
| TIGR03801 | 521 | asp_4_decarbox aspartate 4-decarboxylase. This enz | 99.79 | |
| PRK09440 | 416 | avtA valine--pyruvate transaminase; Provisional | 99.79 | |
| PLN02822 | 481 | serine palmitoyltransferase | 99.79 | |
| TIGR03419 | 121 | NifU_clost FeS cluster assembly scaffold protein N | 99.79 | |
| PRK07503 | 403 | methionine gamma-lyase; Provisional | 99.79 | |
| PRK06460 | 376 | hypothetical protein; Provisional | 99.79 | |
| TIGR03576 | 346 | pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 | 99.79 | |
| TIGR02080 | 382 | O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. | 99.79 | |
| TIGR01325 | 380 | O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. | 99.79 | |
| PRK09472 | 420 | ftsA cell division protein FtsA; Reviewed | 99.79 | |
| TIGR01328 | 391 | met_gam_lyase methionine gamma-lyase. This model d | 99.79 | |
| PRK09028 | 394 | cystathionine beta-lyase; Provisional | 99.79 | |
| PLN03226 | 475 | serine hydroxymethyltransferase; Provisional | 99.79 | |
| PRK07811 | 388 | cystathionine gamma-synthase; Provisional | 99.79 | |
| cd00614 | 369 | CGS_like CGS_like: Cystathionine gamma-synthase is | 99.79 | |
| PLN02368 | 407 | alanine transaminase | 99.79 | |
| PLN02242 | 418 | methionine gamma-lyase | 99.79 | |
| PRK13580 | 493 | serine hydroxymethyltransferase; Provisional | 99.78 | |
| PRK08574 | 385 | cystathionine gamma-synthase; Provisional | 99.78 | |
| PRK08249 | 398 | cystathionine gamma-synthase; Provisional | 99.78 | |
| PRK05968 | 389 | hypothetical protein; Provisional | 99.78 | |
| PF01592 | 126 | NifU_N: NifU-like N terminal domain; InterPro: IPR | 99.78 | |
| PRK01773 | 173 | hscB co-chaperone HscB; Provisional | 99.78 | |
| TIGR03576 | 346 | pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 | 99.78 | |
| PRK06234 | 400 | methionine gamma-lyase; Provisional | 99.78 | |
| cd00617 | 431 | Tnase_like Tryptophanase family (Tnase). This fami | 99.78 | |
| PRK07810 | 403 | O-succinylhomoserine sulfhydrylase; Provisional | 99.78 | |
| PRK09064 | 407 | 5-aminolevulinate synthase; Validated | 99.78 | |
| PRK05664 | 330 | threonine-phosphate decarboxylase; Reviewed | 99.78 | |
| PRK09440 | 416 | avtA valine--pyruvate transaminase; Provisional | 99.78 | |
| PLN02880 | 490 | tyrosine decarboxylase | 99.78 | |
| PRK08114 | 395 | cystathionine beta-lyase; Provisional | 99.78 | |
| TIGR03419 | 121 | NifU_clost FeS cluster assembly scaffold protein N | 99.78 | |
| PRK06959 | 339 | putative threonine-phosphate decarboxylase; Provis | 99.78 | |
| PLN02880 | 490 | tyrosine decarboxylase | 99.78 | |
| PRK15407 | 438 | lipopolysaccharide biosynthesis protein RfbH; Prov | 99.78 | |
| PRK08861 | 388 | cystathionine gamma-synthase; Provisional | 99.78 | |
| PRK08248 | 431 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.78 | |
| PRK05939 | 397 | hypothetical protein; Provisional | 99.77 | |
| PLN02590 | 539 | probable tyrosine decarboxylase | 99.77 | |
| PF01592 | 126 | NifU_N: NifU-like N terminal domain; InterPro: IPR | 99.77 | |
| PRK10534 | 333 | L-threonine aldolase; Provisional | 99.77 | |
| PLN02271 | 586 | serine hydroxymethyltransferase | 99.77 | |
| PRK13393 | 406 | 5-aminolevulinate synthase; Provisional | 99.77 | |
| TIGR01324 | 377 | cysta_beta_ly_B cystathionine beta-lyase, bacteria | 99.77 | |
| PRK08045 | 386 | cystathionine gamma-synthase; Provisional | 99.77 | |
| PRK07582 | 366 | cystathionine gamma-lyase; Validated | 99.77 | |
| PRK07504 | 398 | O-succinylhomoserine sulfhydrylase; Reviewed | 99.77 | |
| cd00615 | 294 | Orn_deC_like Ornithine decarboxylase family. This | 99.77 | |
| PRK12462 | 364 | phosphoserine aminotransferase; Provisional | 99.77 | |
| cd00615 | 294 | Orn_deC_like Ornithine decarboxylase family. This | 99.77 | |
| PRK15407 | 438 | lipopolysaccharide biosynthesis protein RfbH; Prov | 99.77 | |
| PRK06176 | 380 | cystathionine gamma-synthase/cystathionine beta-ly | 99.77 | |
| PRK08247 | 366 | cystathionine gamma-synthase; Reviewed | 99.77 | |
| PLN02242 | 418 | methionine gamma-lyase | 99.77 | |
| PRK07050 | 394 | cystathionine beta-lyase; Provisional | 99.76 | |
| PLN02509 | 464 | cystathionine beta-lyase | 99.76 | |
| PRK05613 | 437 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.76 |
| >KOG0100|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-109 Score=935.56 Aligned_cols=522 Identities=40% Similarity=0.603 Sum_probs=494.2
Q ss_pred CceEEEEEcCcccEEEEEEECCeeEEEeCCCCCccccEEEEEecCCcEEEcHHHHhhhccCCCCchhhhhhhhCCCCCCC
Q psy15216 636 KCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNI 715 (2602)
Q Consensus 636 ~~~vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~v~~~~~~~~~vG~~A~~~~~~~p~~~~~~~K~~lg~~~~~~ 715 (2602)
...|||||||||||||++++||+++||.|++|+|.+||+|+|+++ ++++|.+|++++..||+|++++.||+|||++++.
T Consensus 35 ~gtvigIdLGTTYsCVgV~kNgrvEIiANdQGNRItPSyVaFt~d-erLiGdAAKNQ~~~NPenTiFD~KRLIGr~~~d~ 113 (663)
T KOG0100|consen 35 LGTVIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTDD-ERLIGDAAKNQLTSNPENTIFDAKRLIGRKFNDK 113 (663)
T ss_pred cceEEEEecCCceeeEEEEeCCeEEEEecCCCCccccceeeeccc-hhhhhhHhhcccccCcccceechHHHhCcccCCh
Confidence 457899999999999999999999999999999999999999988 7999999999999999999999999999999885
Q ss_pred CCC----CCCeeeecCCCceEEEEe-----CceeCHHHHHHHHHHHHHHHHHHhhcCccceEEEEEcCCCCHHHHHHHHH
Q psy15216 716 NTN----SFPYDFQNKFGMLHIKTI-----SGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKN 786 (2602)
Q Consensus 716 ~~~----~~~~~~~~~~~~~~~~~~-----~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~~~~ 786 (2602)
..+ .|||+++++++++.+++. .+.++|+|+++|+|.++|+.|+.|+|.+++++|+||||||++.|||++++
T Consensus 114 ~vq~Dik~~Pfkvv~k~~kp~i~v~v~~g~~K~FtPeEiSaMiL~KMKe~AEayLGkkv~~AVvTvPAYFNDAQrQATKD 193 (663)
T KOG0100|consen 114 SVQKDIKFLPFKVVNKDGKPYIQVKVGGGETKVFTPEEISAMILTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKD 193 (663)
T ss_pred hhhhhhhcCceEEEcCCCCccEEEEccCCcccccCHHHHHHHHHHHHHHHHHHHhCCcccceEEecchhcchHHHhhhcc
Confidence 433 899999999988887753 34899999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCceEEEechhHHHHHHhhhccCcccceEEEEEeCCceEEEEEEEEECCEEEEEEEecCCCCcchHHHHHHHHHH
Q psy15216 787 AAKLAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWI 866 (2602)
Q Consensus 787 Aa~~AGl~~~~li~EPtAAAl~y~~~~~~~~~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l 866 (2602)
|..+|||+++|+||||||||++|++++...+.++||||+||||||||++.+++|+|+|+++.||.+|||+|||+++++|+
T Consensus 194 AGtIAgLnV~RIiNePTaAAIAYGLDKk~gEknilVfDLGGGTFDVSlLtIdnGVFeVlaTnGDThLGGEDFD~rvm~~f 273 (663)
T KOG0100|consen 194 AGTIAGLNVVRIINEPTAAAIAYGLDKKDGEKNILVFDLGGGTFDVSLLTIDNGVFEVLATNGDTHLGGEDFDQRVMEYF 273 (663)
T ss_pred cceeccceEEEeecCccHHHHHhcccccCCcceEEEEEcCCceEEEEEEEEcCceEEEEecCCCcccCccchHHHHHHHH
Confidence 99999999999999999999999999988889999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcc-----CCHHHHHHHHHHHHHHHHHcccccceEEEEE-ecCCceEEEEeCHHHHHHHHHHHHHHHHHHHHHHH
Q psy15216 867 VKNAFLKK-----LSYKDVNILMIKSREIKELLSYQSSVKLNVK-LSDKKIVNITIDMKQFFTITQHLVNRTILLSSKAL 940 (2602)
Q Consensus 867 ~~~~~~~~-----~~~~~~~~l~~~~e~~K~~LS~~~~~~~~i~-~~~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~l 940 (2602)
.+-++++. .+.+++++|++++|+||+.||++.++.++++ +.+|.+++-++||..||++.-++|.+++.++.++|
T Consensus 274 iklykkK~gkDv~kdnkA~~KLrRe~EkAKRaLSsqhq~riEIeS~fdG~DfSEtLtRAkFEElNmDLFr~TlkPv~kvl 353 (663)
T KOG0100|consen 274 IKLYKKKHGKDVRKDNKAVQKLRREVEKAKRALSSQHQVRIEIESLFDGVDFSETLTRAKFEELNMDLFRKTLKPVQKVL 353 (663)
T ss_pred HHHHhhhcCCccchhhHHHHHHHHHHHHHHhhhccccceEEeeeeccccccccchhhhhHHHHhhhHHHHHhhHHHHHHH
Confidence 99887665 5788999999999999999999999999999 89999999999999999999999999999999999
Q ss_pred HHcCCCccccceEEEecCccchHHHHHHHHhhc-cCcccCcCCcchHhHHHHHHHhHHhcCCCCCCCceeeeccccccce
Q psy15216 941 MDANLTIKDINNVILVGGSTRMKHIHEGVSNFF-KTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLG 1019 (2602)
Q Consensus 941 ~~a~~~~~~i~~V~LvGG~sr~P~v~~~l~~~f-~~~~~~~~~p~~aVa~GAa~~a~~l~~~~~~~~~~~~~dv~~~~~g 1019 (2602)
+++++.+.+|+.|+|||||+|||.||++|+++| |+++.+.+||+||||+|||.||..++|... ..++++.||+|+++|
T Consensus 354 ~Ds~lkKsdideiVLVGGsTrIPKvQqllk~fF~GKepskGinPdEAVAYGAAVQaGvlsGee~-t~divLLDv~pLtlG 432 (663)
T KOG0100|consen 354 EDSDLKKSDIDEIVLVGGSTRIPKVQQLLKDFFNGKEPSKGINPDEAVAYGAAVQAGVLSGEED-TGDIVLLDVNPLTLG 432 (663)
T ss_pred hhcCcccccCceEEEecCcccChhHHHHHHHHhCCCCccCCCChHHHHHhhhhhhhcccccccC-cCcEEEEeeccccce
Confidence 999999999999999999999999999999999 899999999999999999999999999865 678999999999999
Q ss_pred EeeeccEEEEEEecCCCCCCCcEEEEEeccccccceeeeEeecCccccccCceeeeeEecCCCCCCCCccEEEEEEEECC
Q psy15216 1020 IETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDA 1099 (2602)
Q Consensus 1020 i~~~~~~~~~ii~~~t~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~i~~~~~g~~~i~v~f~~d~ 1099 (2602)
||+.||.|..+|||||.||+++++.|+|..|||+.+.|+||+||+.+.++|++||+|.++||||+|+|.|+|+|+|++|.
T Consensus 433 IETvGGVMTklI~RNTviPTkKSQvFsTa~DnQ~tV~I~vyEGER~mtkdn~lLGkFdltGipPAPRGvpqIEVtFevDa 512 (663)
T KOG0100|consen 433 IETVGGVMTKLIPRNTVIPTKKSQVFSTAQDNQPTVTIQVYEGERPMTKDNHLLGKFDLTGIPPAPRGVPQIEVTFEVDA 512 (663)
T ss_pred eeeecceeeccccCCcccCccccceeeecccCCceEEEEEeeccccccccccccccccccCCCCCCCCCccEEEEEEEcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEEEEEEecCCceEEEEEecCCC-CCHHHHHhhhhccccCCCchhHHHHhcccchhhhcc
Q psy15216 1100 DGLLSIFAYEKISGKKKFITIKPFYN-MNLDEIKNGAIFNENSGISLCDALLKNSIFIEHACE 1161 (2602)
Q Consensus 1100 ~g~l~v~a~~~~~g~~~~~~~~~~~~-l~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~c~ 1161 (2602)
||+|+|+|.|+.||++.+++|.++.+ ||+|+|++|+ ++++-..-.+..+...+.-.++.+
T Consensus 513 ngiL~VsAeDKgtg~~~kitItNd~~rLt~EdIerMv--~eAekFAeeDk~~KekieaRN~LE 573 (663)
T KOG0100|consen 513 NGILQVSAEDKGTGKKEKITITNDKGRLTPEDIERMV--NEAEKFAEEDKKLKEKIEARNELE 573 (663)
T ss_pred CceEEEEeeccCCCCcceEEEecCCCCCCHHHHHHHH--HHHHHHhhhhHHHHHHHHhHHHHH
Confidence 99999999999999999999999966 9999999986 877776666666555554444333
|
|
| >KOG0100|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-100 Score=863.57 Aligned_cols=497 Identities=41% Similarity=0.630 Sum_probs=472.9
Q ss_pred CcceEEEEEcCcccEEEEEEECCeEEEEeCCCCCccccEEEEEecCCcEEecHHHHhhhccCCCCchhhhhhhcCCCCCC
Q psy15216 2031 NKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKN 2110 (2602)
Q Consensus 2031 ~~~~vvGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~~~~~~vG~~A~~~~~~~p~~~~~~~K~~lg~~~~~ 2110 (2602)
..-.|||||||||||||+++.+|++++|.|++|+|.+||+|+|+++ ++++|+.|+++...||++++++.||++|+.+.+
T Consensus 34 ~~gtvigIdLGTTYsCVgV~kNgrvEIiANdQGNRItPSyVaFt~d-erLiGdAAKNQ~~~NPenTiFD~KRLIGr~~~d 112 (663)
T KOG0100|consen 34 KLGTVIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTDD-ERLIGDAAKNQLTSNPENTIFDAKRLIGRKFND 112 (663)
T ss_pred ccceEEEEecCCceeeEEEEeCCeEEEEecCCCCccccceeeeccc-hhhhhhHhhcccccCcccceechHHHhCcccCC
Confidence 4567999999999999999999999999999999999999999876 789999999999999999999999999999988
Q ss_pred CC----CCCCCeeeecCCCceEEEec-----CceeCHHHHHHHHHHHHHHHHHHhhccccceEEEeeCCCCCHHHHHHHH
Q psy15216 2111 IN----TNSFPYDFQNKFGMLHIKTI-----SGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTK 2181 (2602)
Q Consensus 2111 ~~----~~~~~~~~~~~~g~~~~~~~-----~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~l~ 2181 (2602)
.. .+.+||++.++.++..+++. .+.++|+|+++|+|.++|+.|+.|+|.+++.+|+||||||++.|||+++
T Consensus 113 ~~vq~Dik~~Pfkvv~k~~kp~i~v~v~~g~~K~FtPeEiSaMiL~KMKe~AEayLGkkv~~AVvTvPAYFNDAQrQATK 192 (663)
T KOG0100|consen 113 KSVQKDIKFLPFKVVNKDGKPYIQVKVGGGETKVFTPEEISAMILTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATK 192 (663)
T ss_pred hhhhhhhhcCceEEEcCCCCccEEEEccCCcccccCHHHHHHHHHHHHHHHHHHHhCCcccceEEecchhcchHHHhhhc
Confidence 64 46899999999888776542 3479999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCceeEeechhHHHHHHhhhccCCCCceEEEEEeCCceEEEEEEEEeCCEEEEEEEecCCCCchhHHHHHHHHH
Q psy15216 2182 NAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSW 2261 (2602)
Q Consensus 2182 ~Aa~~AGl~~~~li~EP~AAAl~y~~~~~~~~~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~ 2261 (2602)
+|..+|||+++++|+||||||++|++++...++++||||+||||||||++.+++|.|+|+++.||.++||+|||+++++|
T Consensus 193 DAGtIAgLnV~RIiNePTaAAIAYGLDKk~gEknilVfDLGGGTFDVSlLtIdnGVFeVlaTnGDThLGGEDFD~rvm~~ 272 (663)
T KOG0100|consen 193 DAGTIAGLNVVRIINEPTAAAIAYGLDKKDGEKNILVFDLGGGTFDVSLLTIDNGVFEVLATNGDTHLGGEDFDQRVMEY 272 (663)
T ss_pred ccceeccceEEEeecCccHHHHHhcccccCCcceEEEEEcCCceEEEEEEEEcCceEEEEecCCCcccCccchHHHHHHH
Confidence 99999999999999999999999999998888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcC------ChhHHHHHHHHHHHHHHHhcccceEEEEEE-ecCCceEEEEcCHHHHHHHHHHHHHHHHHHHHH
Q psy15216 2262 IVKNAFLKKL------SYKDVNILMIKSREIKELLSYQSSVKLNVK-LSDKKIVNITIDMKQFFTITQHLVNRTILLSSK 2334 (2602)
Q Consensus 2262 l~~~~~~~~~------~~~~~~~l~~~~e~~K~~ls~~~~~~~~i~-~~~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~ 2334 (2602)
+.+- ++++. ..+...+|++++|++|+.||++.++.++++ +.+|.+++-++||..||++.-++|.++..++.+
T Consensus 273 fikl-ykkK~gkDv~kdnkA~~KLrRe~EkAKRaLSsqhq~riEIeS~fdG~DfSEtLtRAkFEElNmDLFr~TlkPv~k 351 (663)
T KOG0100|consen 273 FIKL-YKKKHGKDVRKDNKAVQKLRREVEKAKRALSSQHQVRIEIESLFDGVDFSETLTRAKFEELNMDLFRKTLKPVQK 351 (663)
T ss_pred HHHH-HhhhcCCccchhhHHHHHHHHHHHHHHhhhccccceEEeeeeccccccccchhhhhHHHHhhhHHHHHhhHHHHH
Confidence 9975 44433 235678999999999999999999999999 889999999999999999999999999999999
Q ss_pred HHHHcCCCccccceEEEEeCccchHHHHHHHHhhc-CCcccCCCCccchhhhHHHHHhHHhcCCCCCCCceeeecccccc
Q psy15216 2335 ALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFF-KTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLS 2413 (2602)
Q Consensus 2335 ~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f-~~~~~~~~~p~~aVa~GAa~~a~~~~~~~~~~~~~~~~d~~~~~ 2413 (2602)
+|+++++++.+|+.|+|||||+|||.||++|+++| |+++.+.+||+||||+|||.+|..+++.... .++++.|++|.+
T Consensus 352 vl~Ds~lkKsdideiVLVGGsTrIPKvQqllk~fF~GKepskGinPdEAVAYGAAVQaGvlsGee~t-~divLLDv~pLt 430 (663)
T KOG0100|consen 352 VLEDSDLKKSDIDEIVLVGGSTRIPKVQQLLKDFFNGKEPSKGINPDEAVAYGAAVQAGVLSGEEDT-GDIVLLDVNPLT 430 (663)
T ss_pred HHhhcCcccccCceEEEecCcccChhHHHHHHHHhCCCCccCCCChHHHHHhhhhhhhcccccccCc-CcEEEEeecccc
Confidence 99999999999999999999999999999999999 7899999999999999999999999998654 459999999999
Q ss_pred ceEEeeccEEEEEEecCCcCCCCcEEEEEeecccccceeEEEeecCcccccCCceeEEEEeeCCCCCCCCccEEEEEEEE
Q psy15216 2414 LGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQV 2493 (2602)
Q Consensus 2414 ~gi~~~~~~~~~ii~k~t~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~f~i 2493 (2602)
+||++.+|.|..+|+|||.||+++++.|+|..|||..+.|.+|+||+.+.++|++||+|.+.||||+|.|.|+|+|||++
T Consensus 431 lGIETvGGVMTklI~RNTviPTkKSQvFsTa~DnQ~tV~I~vyEGER~mtkdn~lLGkFdltGipPAPRGvpqIEVtFev 510 (663)
T KOG0100|consen 431 LGIETVGGVMTKLIPRNTVIPTKKSQVFSTAQDNQPTVTIQVYEGERPMTKDNHLLGKFDLTGIPPAPRGVPQIEVTFEV 510 (663)
T ss_pred ceeeeecceeeccccCCcccCccccceeeecccCCceEEEEEeeccccccccccccccccccCCCCCCCCCccEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccEEEEEEeecCCcEEEEEEecC-CCCChHHHhcc
Q psy15216 2494 DADGLLSIFAYEKISGKKKFITIKPF-YNMNLDEIKNG 2530 (2602)
Q Consensus 2494 d~~g~l~V~a~~~~tg~~~~~~i~~~-~~l~~~ei~~~ 2530 (2602)
|.||+|+|+|.|+.||++.+++|.+. ++||+|||++.
T Consensus 511 DangiL~VsAeDKgtg~~~kitItNd~~rLt~EdIerM 548 (663)
T KOG0100|consen 511 DANGILQVSAEDKGTGKKEKITITNDKGRLTPEDIERM 548 (663)
T ss_pred ccCceEEEEeeccCCCCcceEEEecCCCCCCHHHHHHH
Confidence 99999999999999999999999998 88999999963
|
|
| >KOG0102|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-88 Score=796.80 Aligned_cols=514 Identities=42% Similarity=0.623 Sum_probs=485.3
Q ss_pred CCceEEEEEcCcccEEEEEEECCeeEEEeCCCCCccccEEEEEecCCcEEEcHHHHhhhccCCCCchhhhhhhhCCCCCC
Q psy15216 635 NKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKN 714 (2602)
Q Consensus 635 ~~~~vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~v~~~~~~~~~vG~~A~~~~~~~p~~~~~~~K~~lg~~~~~ 714 (2602)
-...++|||+||||||+|++.++.|.++.|..|.|.+||+|+|..++++++|..|+.+...||.|+++..||+|||++.+
T Consensus 25 ~~~~vigidlgttnS~va~meg~~~kiienaegqrtTpsvva~~kdge~Lvg~~akrqav~n~~ntffatKrligRrf~d 104 (640)
T KOG0102|consen 25 VKGKVIGIDLGTTNSCVAVMEGKKPKIIENAEGQRTTPSVVAFTKDGERLVGMPAKRQAVTNPENTFFATKRLIGRRFDD 104 (640)
T ss_pred CCCceeeEeeeccceeEEEEeCCCceEeecccccccCCceEEEeccccEEecchhhhhhccCCCceEEEehhhhhhhccC
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCC----CCCeeee-cCCCceEEEEeCceeCHHHHHHHHHHHHHHHHHHhhcCccceEEEEEcCCCCHHHHHHHHHHHH
Q psy15216 715 INTN----SFPYDFQ-NKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAK 789 (2602)
Q Consensus 715 ~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~~~~Aa~ 789 (2602)
++.+ ..||+++ ..+|...+...+..++|.++.+++|.++++.|++|++..+.++|+||||||++.||+++++|.+
T Consensus 105 ~evq~~~k~vpyKiVk~~ngdaw~e~~G~~~spsqig~~vl~kmk~tae~yl~~~v~~avvtvpAyfndsqRqaTkdag~ 184 (640)
T KOG0102|consen 105 PEVQKDIKQVPYKIVKASNGDAWVEARGKQYSPSQIGAFVLMKMKETAEAYLGKKVKNAVITVPAYFNDSQRQATKDAGQ 184 (640)
T ss_pred HHHHHHHHhCCcceEEccCCcEEEEeCCeEecHHHHHHHHHHHHHHHHHHHcCchhhheeeccHHHHhHHHHHHhHhhhh
Confidence 6554 6899988 6789999999899999999999999999999999999999999999999999999999999999
Q ss_pred HcCCceEEEechhHHHHHHhhhccCcccceEEEEEeCCceEEEEEEEEECCEEEEEEEecCCCCcchHHHHHHHHHHHHH
Q psy15216 790 LAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKN 869 (2602)
Q Consensus 790 ~AGl~~~~li~EPtAAAl~y~~~~~~~~~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~ 869 (2602)
+||++++++||||||||++|+++.+. .+.++|||+||||||+||+.+.++.|+|.++.||.++||+|||..++.|+...
T Consensus 185 iagl~vlrvineptaaalaygld~k~-~g~iaV~dLgggtfdisilei~~gvfevksTngdtflggedfd~~~~~~~v~~ 263 (640)
T KOG0102|consen 185 IAGLNVLRVINEPTAAALAYGLDKKE-DGVIAVFDLGGGTFDISILEIEDGVFEVKSTNGDTHLGGEDFDNALVRFIVSE 263 (640)
T ss_pred hccceeeccCCccchhHHhhcccccC-CCceEEEEcCCceeeeeeehhccceeEEEeccCccccChhHHHHHHHHHHHHh
Confidence 99999999999999999999999875 78999999999999999999999999999999999999999999999999999
Q ss_pred Hhhcc-----CCHHHHHHHHHHHHHHHHHcccccceEEEEEe-----cCCceEEEEeCHHHHHHHHHHHHHHHHHHHHHH
Q psy15216 870 AFLKK-----LSYKDVNILMIKSREIKELLSYQSSVKLNVKL-----SDKKIVNITIDMKQFFTITQHLVNRTILLSSKA 939 (2602)
Q Consensus 870 ~~~~~-----~~~~~~~~l~~~~e~~K~~LS~~~~~~~~i~~-----~~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~ 939 (2602)
|+... .+..++++|+.++|++|+.||+..++.+++++ .+.+.+++++||.+||+++.++++|+++++.++
T Consensus 264 fk~~~gidl~kd~~a~qrl~eaaEkaKielSs~~~tei~lp~iTada~gpkh~~i~~tr~efe~~v~~lI~Rti~p~~~a 343 (640)
T KOG0102|consen 264 FKKEEGIDLTKDRMALQRLREAAEKAKIELSSRQQTEINLPFITADASGPKHLNIELTRGEFEELVPSLIARTIEPCKKA 343 (640)
T ss_pred hhcccCcchhhhHHHHHHHHHHHHhhhhhhhhcccceeccceeeccCCCCeeEEEeecHHHHHHhhHHHHHhhhhHHHHH
Confidence 87655 57889999999999999999999999999884 234789999999999999999999999999999
Q ss_pred HHHcCCCccccceEEEecCccchHHHHHHHHhhccCcccCcCCcchHhHHHHHHHhHHhcCCCCCCCceeeeccccccce
Q psy15216 940 LMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLG 1019 (2602)
Q Consensus 940 l~~a~~~~~~i~~V~LvGG~sr~P~v~~~l~~~f~~~~~~~~~p~~aVa~GAa~~a~~l~~~~~~~~~~~~~dv~~~~~g 1019 (2602)
|++|++..+||++|+||||++|||++++.|++.||..+....||+|+||.|||+++..+++.- .++.+.||+|++||
T Consensus 344 L~dA~~~~~di~EV~lvggmtrmpkv~s~V~e~fgk~p~~~vnPdeava~GAaiqggvl~geV---kdvlLLdVtpLsLg 420 (640)
T KOG0102|consen 344 LRDASLSSSDINEVILVGGMTRMPKVQSTVKELFGKGPSKGVNPDEAVAGGAAIQGGVLSGEV---KDVLLLDVTPLSLG 420 (640)
T ss_pred HHhccCChhhhhhhhhhcchhhcHHHHHHHHHHhCCCCCCCcCCcchhccchhhccchhhccc---cceeeeecchHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999864 47999999999999
Q ss_pred EeeeccEEEEEEecCCCCCCCcEEEEEeccccccceeeeEeecCccccccCceeeeeEecCCCCCCCCccEEEEEEEECC
Q psy15216 1020 IETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDA 1099 (2602)
Q Consensus 1020 i~~~~~~~~~ii~~~t~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~i~~~~~g~~~i~v~f~~d~ 1099 (2602)
|++.+|.|..+|+|||.||+++++.|+|+.|+|+.+.|.|+|||++...+|..+|+|.+.||||.|+|.++|+|+|+||.
T Consensus 421 ietlggvft~Li~rnttIptkksqvfstaadgqt~V~ikv~qgere~~~dnk~lG~f~l~gipp~pRgvpqieVtfDIda 500 (640)
T KOG0102|consen 421 IETLGGVFTKLIPRNTTIPTKKSQVFSTAADGQTQVEIKVFQGEREMVNDNKLLGSFILQGIPPAPRGVPQIEVTFDIDA 500 (640)
T ss_pred HHhhhhhheecccCCcccCchhhhheeecccCCceEEEEeeechhhhhccCcccceeeecccCCCCCCCCceeEEEeecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEEEEEEecCCceEEEEEecCCCCCHHHHHhhhhccccCCCchhHHHHhccc
Q psy15216 1100 DGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKNGAIFNENSGISLCDALLKNSI 1154 (2602)
Q Consensus 1100 ~g~l~v~a~~~~~g~~~~~~~~~~~~l~~~~i~~~~~~~~~~g~~~~~~~~~~~~ 1154 (2602)
|||++|+|.++.|||++.+++...++||++||++|. ++++-..--+......+
T Consensus 501 nGI~~vsA~dk~t~K~qsi~i~~sggLs~~ei~~mV--~eaer~~~~d~~~~~~i 553 (640)
T KOG0102|consen 501 NGIGTVSAKDKGTGKSQSITIASSGGLSKDEIELMV--GEAERLASTDKEKREAI 553 (640)
T ss_pred CceeeeehhhcccCCccceEEeecCCCCHHHHHHHH--HHHHHHHhhhHHHHHHh
Confidence 999999999999999999999999999999999976 55555443344433333
|
|
| >PTZ00186 heat shock 70 kDa precursor protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-83 Score=856.84 Aligned_cols=500 Identities=38% Similarity=0.606 Sum_probs=462.5
Q ss_pred ceEEEEEcCcccEEEEEEECCeeEEEeCCCCCccccEEEEEecCCcEEEcHHHHhhhccCCCCchhhhhhhhCCCCCCCC
Q psy15216 637 CVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNIN 716 (2602)
Q Consensus 637 ~~vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~v~~~~~~~~~vG~~A~~~~~~~p~~~~~~~K~~lg~~~~~~~ 716 (2602)
..+||||||||||+||+++++++++++|..|.+.+||+|+|.++ .++||..|+.+...+|.++++++||+||+++.+..
T Consensus 27 ~~viGIDLGTTnS~vA~~~~~~~~ii~n~~g~r~tPS~V~f~~~-~~lvG~~Ak~~~~~~p~~ti~~~KRliG~~~~d~~ 105 (657)
T PTZ00186 27 GDVIGVDLGTTYSCVATMDGDKARVLENSEGFRTTPSVVAFKGS-EKLVGLAAKRQAITNPQSTFYAVKRLIGRRFEDEH 105 (657)
T ss_pred ceEEEEEeCcCeEEEEEEeCCceEEeecCCCCcccceEEEECCC-CEEEcHHHHHhhhhCchhHHHHHHHHhccccccHH
Confidence 36899999999999999999999999999999999999999765 58999999999999999999999999999887642
Q ss_pred C----CCCCeeee-cCCCceEEEE-eCceeCHHHHHHHHHHHHHHHHHHhhcCccceEEEEEcCCCCHHHHHHHHHHHHH
Q psy15216 717 T----NSFPYDFQ-NKFGMLHIKT-ISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKL 790 (2602)
Q Consensus 717 ~----~~~~~~~~-~~~~~~~~~~-~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~~~~Aa~~ 790 (2602)
. ..+||.+. ..++...+.. .+..++|++|++++|++||+.|++++|.++.++|||||+||++.||++|++||++
T Consensus 106 v~~~~~~~p~~vv~~~~~~~~i~~~~~~~~speeisa~iL~~Lk~~Ae~~lg~~v~~aVITVPayF~~~qR~at~~Aa~~ 185 (657)
T PTZ00186 106 IQKDIKNVPYKIVRAGNGDAWVQDGNGKQYSPSQIGAFVLEKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAGTI 185 (657)
T ss_pred HHHhhccCcEEEEEcCCCceEEEeCCCeEEcHHHHHHHHHHHHHHHHHHHhCCccceEEEEECCCCChHHHHHHHHHHHH
Confidence 2 26899987 4455555554 3568999999999999999999999999999999999999999999999999999
Q ss_pred cCCceEEEechhHHHHHHhhhccCcccceEEEEEeCCceEEEEEEEEECCEEEEEEEecCCCCcchHHHHHHHHHHHHHH
Q psy15216 791 AGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNA 870 (2602)
Q Consensus 791 AGl~~~~li~EPtAAAl~y~~~~~~~~~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~ 870 (2602)
|||++++||+||||||++|+.... .+++++|||+||||||+||+++.++.++|+++.||.+|||+|||++|++|+.++|
T Consensus 186 AGl~v~rlInEPtAAAlayg~~~~-~~~~vlV~DlGGGT~DvSil~~~~g~~~V~at~Gd~~LGG~DfD~~l~~~~~~~f 264 (657)
T PTZ00186 186 AGLNVIRVVNEPTAAALAYGMDKT-KDSLIAVYDLGGGTFDISVLEIAGGVFEVKATNGDTHLGGEDFDLALSDYILEEF 264 (657)
T ss_pred cCCCeEEEEcChHHHHHHHhccCC-CCCEEEEEECCCCeEEEEEEEEeCCEEEEEEecCCCCCCchhHHHHHHHHHHHHH
Confidence 999999999999999999998654 4679999999999999999999999999999999999999999999999999998
Q ss_pred hhcc-----CCHHHHHHHHHHHHHHHHHcccccceEEEEEec-----CCceEEEEeCHHHHHHHHHHHHHHHHHHHHHHH
Q psy15216 871 FLKK-----LSYKDVNILMIKSREIKELLSYQSSVKLNVKLS-----DKKIVNITIDMKQFFTITQHLVNRTILLSSKAL 940 (2602)
Q Consensus 871 ~~~~-----~~~~~~~~l~~~~e~~K~~LS~~~~~~~~i~~~-----~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~l 940 (2602)
..+. .+.+.+.+|+.+||++|+.||...++.+.++.. ++.+++++|||++|+++++|+++++..+++++|
T Consensus 265 ~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~i~~~~~g~~~~~~~ItR~efe~l~~~l~~r~~~~v~~~L 344 (657)
T PTZ00186 265 RKTSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFITANADGAQHIQMHISRSKFEGITQRLIERSIAPCKQCM 344 (657)
T ss_pred hhhcCCCcccCHHHHHHHHHHHHHHHHHhCCCCceEEEEeeeccCCCCCcceEEEecHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7654 357888999999999999999999998888732 124688999999999999999999999999999
Q ss_pred HHcCCCccccceEEEecCccchHHHHHHHHhhccCcccCcCCcchHhHHHHHHHhHHhcCCCCCCCceeeeccccccceE
Q psy15216 941 MDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGI 1020 (2602)
Q Consensus 941 ~~a~~~~~~i~~V~LvGG~sr~P~v~~~l~~~f~~~~~~~~~p~~aVa~GAa~~a~~l~~~~~~~~~~~~~dv~~~~~gi 1020 (2602)
+++++++.+|+.|+||||+||||.||++|+++|+.++....||++|||+|||++|+++++.. .++.+.|++|++||+
T Consensus 345 ~~a~~~~~dId~VvLVGGssriP~V~~~l~~~fg~~~~~~~nPdeaVA~GAAi~a~~l~~~~---~~~~l~Dv~p~slgi 421 (657)
T PTZ00186 345 KDAGVELKEINDVVLVGGMTRMPKVVEEVKKFFQKDPFRGVNPDEAVALGAATLGGVLRGDV---KGLVLLDVTPLSLGI 421 (657)
T ss_pred HHcCCChhhCCEEEEECCcccChHHHHHHHHHhCCCccccCCCchHHHHhHHHHHHHhcccc---CceEEEeeccccccc
Confidence 99999999999999999999999999999999998888999999999999999999998753 368899999999999
Q ss_pred eeeccEEEEEEecCCCCCCCcEEEEEeccccccceeeeEeecCccccccCceeeeeEecCCCCCCCCccEEEEEEEECCC
Q psy15216 1021 ETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDAD 1100 (2602)
Q Consensus 1021 ~~~~~~~~~ii~~~t~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~i~~~~~g~~~i~v~f~~d~~ 1100 (2602)
++.++.+.+||||||+||+++++.|+|..|||+.+.|.|||||+..+++|..||+|.|.++||.|+|.++|+|+|+||.|
T Consensus 422 e~~~g~~~~iI~rnt~iP~~~~~~f~t~~dnQ~~v~i~i~qGe~~~~~~n~~lg~~~l~~ip~~~~G~~~I~Vtf~iD~n 501 (657)
T PTZ00186 422 ETLGGVFTRMIPKNTTIPTKKSQTFSTAADNQTQVGIKVFQGEREMAADNQMMGQFDLVGIPPAPRGVPQIEVTFDIDAN 501 (657)
T ss_pred eecCCEEEEEEeCCCEeeEEEeeccccccCCCceEEEEEEEecccccccccccceEEEcCCCCCCCCCCcEEEEEEEcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEEEecCCceEEEEEecCCCCCHHHHHhhhhccccCCC
Q psy15216 1101 GLLSIFAYEKISGKKKFITIKPFYNMNLDEIKNGAIFNENSGI 1143 (2602)
Q Consensus 1101 g~l~v~a~~~~~g~~~~~~~~~~~~l~~~~i~~~~~~~~~~g~ 1143 (2602)
|+|+|+|+++.||++..++|....+||++||++++ ++.+..
T Consensus 502 GiL~V~a~d~~tg~~~~~~i~~~~~ls~~~i~~~~--~~~~~~ 542 (657)
T PTZ00186 502 GICHVTAKDKATGKTQNITITANGGLSKEQIEQMI--RDSEQH 542 (657)
T ss_pred CEEEEEEEEccCCcEEEEEeccCccCCHHHHHHHH--HHHHhh
Confidence 99999999999999999999988889999999986 444433
|
|
| >PRK13410 molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-80 Score=832.77 Aligned_cols=494 Identities=39% Similarity=0.642 Sum_probs=461.1
Q ss_pred eEEEEEcCcccEEEEEEECCeeEEEeCCCCCccccEEEEEecCCcEEEcHHHHhhhccCCCCchhhhhhhhCCCCCCCCC
Q psy15216 638 VSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNINT 717 (2602)
Q Consensus 638 ~vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~v~~~~~~~~~vG~~A~~~~~~~p~~~~~~~K~~lg~~~~~~~~ 717 (2602)
.+||||||||||+||++++|+|.+|+|..|++.+||+|+|.+++++++|..|+.++..+|.++++++||+||+++.+++.
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KRliG~~~~~~~~ 82 (668)
T PRK13410 3 RIVGIDLGTTNSVVAVMEGGKPVVIANAEGMRTTPSVVGFTKDGELLVGQLARRQLVLNPQNTFYNLKRFIGRRYDELDP 82 (668)
T ss_pred cEEEEEeCCCcEEEEEEECCeEEEEECCCCCccCceEEEEeCCCCEEECHHHHHhhHhCccceehHHhhhhCCCchhhHH
Confidence 58999999999999999999999999999999999999998777899999999999999999999999999999876543
Q ss_pred --CCCCeeee-cCCCceEEEE--eCceeCHHHHHHHHHHHHHHHHHHhhcCccceEEEEEcCCCCHHHHHHHHHHHHHcC
Q psy15216 718 --NSFPYDFQ-NKFGMLHIKT--ISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAG 792 (2602)
Q Consensus 718 --~~~~~~~~-~~~~~~~~~~--~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~~~~Aa~~AG 792 (2602)
..+||.+. ..+|.+.+.. .+..++|+++++++|++|++.|+.++|.++.++|||||+||++.||++|++||++||
T Consensus 83 ~~~~~~~~v~~~~~g~~~i~~~~~~~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~AG 162 (668)
T PRK13410 83 ESKRVPYTIRRNEQGNVRIKCPRLEREFAPEELSAMILRKLADDASRYLGEPVTGAVITVPAYFNDSQRQATRDAGRIAG 162 (668)
T ss_pred hhccCCeEEEECCCCcEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHHHcC
Confidence 36899886 4566666654 356899999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEechhHHHHHHhhhccCcccceEEEEEeCCceEEEEEEEEECCEEEEEEEecCCCCcchHHHHHHHHHHHHHHhh
Q psy15216 793 LNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFL 872 (2602)
Q Consensus 793 l~~~~li~EPtAAAl~y~~~~~~~~~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~ 872 (2602)
|++++||+||+|||++|++... .++++||||+||||||+||+++.++.++|+++.|+.++||.+||++|++|+.++|..
T Consensus 163 l~v~~li~EPtAAAlayg~~~~-~~~~vlV~DlGgGT~Dvsv~~~~~g~~~V~at~gd~~lGG~dfD~~l~~~l~~~f~~ 241 (668)
T PRK13410 163 LEVERILNEPTAAALAYGLDRS-SSQTVLVFDLGGGTFDVSLLEVGNGVFEVKATSGDTQLGGNDFDKRIVDWLAEQFLE 241 (668)
T ss_pred CCeEEEecchHHHHHHhccccC-CCCEEEEEECCCCeEEEEEEEEcCCeEEEEEeecCCCCChhHHHHHHHHHHHHHHHh
Confidence 9999999999999999998754 567999999999999999999999999999999999999999999999999999865
Q ss_pred cc-----CCHHHHHHHHHHHHHHHHHcccccceEEEEEe-cC----CceEEEEeCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15216 873 KK-----LSYKDVNILMIKSREIKELLSYQSSVKLNVKL-SD----KKIVNITIDMKQFFTITQHLVNRTILLSSKALMD 942 (2602)
Q Consensus 873 ~~-----~~~~~~~~l~~~~e~~K~~LS~~~~~~~~i~~-~~----~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~ 942 (2602)
+. .+++++.+|+.+||++|+.||...++.+.+++ .. ..++..+|||++||++++++++++..+|+++|++
T Consensus 242 ~~~~d~~~~~~a~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~FE~l~~~l~~r~~~~i~~~L~~ 321 (668)
T PRK13410 242 KEGIDLRRDRQALQRLTEAAEKAKIELSGVSVTDISLPFITATEDGPKHIETRLDRKQFESLCGDLLDRLLRPVKRALKD 321 (668)
T ss_pred hhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeecCCCCCeeEEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 36788899999999999999999988888873 22 2478899999999999999999999999999999
Q ss_pred cCCCccccceEEEecCccchHHHHHHHHhhccCcccCcCCcchHhHHHHHHHhHHhcCCCCCCCceeeeccccccceEee
Q psy15216 943 ANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIET 1022 (2602)
Q Consensus 943 a~~~~~~i~~V~LvGG~sr~P~v~~~l~~~f~~~~~~~~~p~~aVa~GAa~~a~~l~~~~~~~~~~~~~dv~~~~~gi~~ 1022 (2602)
+++++.+|+.|+||||+||||+|+++|+++|+.++....||++|||+|||++|+++++.. .++.+.|++|++||+++
T Consensus 322 ag~~~~dId~VvLVGGssRiP~V~~~l~~~fg~~~~~~~npdeaVA~GAAi~aa~ls~~~---~~~~l~Dv~p~slgie~ 398 (668)
T PRK13410 322 AGLSPEDIDEVVLVGGSTRMPMVQQLVRTLIPREPNQNVNPDEVVAVGAAIQAGILAGEL---KDLLLLDVTPLSLGLET 398 (668)
T ss_pred cCCChhhCcEEEEECCccccHHHHHHHHHHcCCCcccCCCCchHHHHhHHHHHHhhcccc---cceeEEeecccccccee
Confidence 999999999999999999999999999999998899999999999999999999998853 36889999999999999
Q ss_pred eccEEEEEEecCCCCCCCcEEEEEeccccccceeeeEeecCccccccCceeeeeEecCCCCCCCCccEEEEEEEECCCee
Q psy15216 1023 IGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADGL 1102 (2602)
Q Consensus 1023 ~~~~~~~ii~~~t~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~i~~~~~g~~~i~v~f~~d~~g~ 1102 (2602)
.++.+.++||||++||+++++.|++..|||+.+.|.||||++....+|..||+|.|+++||.++|.++|+|+|++|.||+
T Consensus 399 ~~g~~~~li~rnt~iP~~~~~~f~t~~dnq~~v~i~v~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~I~v~f~id~nGi 478 (668)
T PRK13410 399 IGGVMKKLIPRNTTIPVRRSDVFSTSENNQSSVEIHVWQGEREMASDNKSLGRFKLSGIPPAPRGVPQVQVAFDIDANGI 478 (668)
T ss_pred cCCeeEEEEeCCCcccccccccceeccCCCcEEEEEEEeeccccccCCceEEEEEEeCCCCCCCCCCeEEEEEEECCCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEecCCceEEEEEecCCCCCHHHHHhhh
Q psy15216 1103 LSIFAYEKISGKKKFITIKPFYNMNLDEIKNGA 1135 (2602)
Q Consensus 1103 l~v~a~~~~~g~~~~~~~~~~~~l~~~~i~~~~ 1135 (2602)
|+|++.+..||++..++|....+||++||++++
T Consensus 479 L~V~a~d~~tg~~~~~~i~~~~~ls~~ei~~~~ 511 (668)
T PRK13410 479 LQVSATDRTTGREQSVTIQGASTLSEQEVNRMI 511 (668)
T ss_pred EEEEEEEcCCCceeeeeecccccCCHHHHHHHH
Confidence 999999999999999999888889999999986
|
|
| >TIGR01991 HscA Fe-S protein assembly chaperone HscA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-80 Score=829.09 Aligned_cols=494 Identities=54% Similarity=0.844 Sum_probs=465.7
Q ss_pred EEEEEcCcccEEEEEEECCeeEEEeCCCCCccccEEEEEecCCcEEEcHHHHhhhccCCCCchhhhhhhhCCCCCCCCC-
Q psy15216 639 SIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNINT- 717 (2602)
Q Consensus 639 vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~v~~~~~~~~~vG~~A~~~~~~~p~~~~~~~K~~lg~~~~~~~~- 717 (2602)
+||||||||||+||++++|++++++|..|++.+||+|+|.++++++||..|+.++..+|.++++++||+||+++.+++.
T Consensus 1 ~iGIDlGTtns~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~Kr~iG~~~~d~~~~ 80 (599)
T TIGR01991 1 AVGIDLGTTNSLVASVRSGVPEVLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDPKNTISSVKRLMGRSIEDIKTF 80 (599)
T ss_pred CEEEEEccccEEEEEEECCEEEEEECCCCCcccCeEEEEeCCCCEEecHHHHHhhhhChhhhHHHHHHHhCCCccchhhc
Confidence 5899999999999999999999999999999999999998877899999999999999999999999999999877543
Q ss_pred CCCCeeee-cCCCceEEEEeCceeCHHHHHHHHHHHHHHHHHHhhcCccceEEEEEcCCCCHHHHHHHHHHHHHcCCceE
Q psy15216 718 NSFPYDFQ-NKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVL 796 (2602)
Q Consensus 718 ~~~~~~~~-~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~~~~Aa~~AGl~~~ 796 (2602)
..+||.+. ..+|.+.+...++.++|+++++++|++|++.|++++|.++.++|||||+||++.||++|++||++|||+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~p~ei~a~iL~~lk~~a~~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa~~AGl~v~ 160 (599)
T TIGR01991 81 SILPYRFVDGPGEMVRLRTVQGTVTPVEVSAEILKKLKQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAARLAGLNVL 160 (599)
T ss_pred ccCCEEEEEcCCCceEEEeCCCEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHHHcCCCce
Confidence 36789886 45677777777778999999999999999999999999999999999999999999999999999999999
Q ss_pred EEechhHHHHHHhhhccCcccceEEEEEeCCceEEEEEEEEECCEEEEEEEecCCCCcchHHHHHHHHHHHHHHhhc-cC
Q psy15216 797 RLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLK-KL 875 (2602)
Q Consensus 797 ~li~EPtAAAl~y~~~~~~~~~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~-~~ 875 (2602)
+||+||+|||++|++... .++++||||+||||||+||+++.++.++|+++.|+.++||++||++|++|+.+++... ..
T Consensus 161 ~li~EPtAAAlay~~~~~-~~~~vlV~DlGgGT~DvSi~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~l~~~~~~~~~~ 239 (599)
T TIGR01991 161 RLLNEPTAAAVAYGLDKA-SEGIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHALAKWILKQLGISADL 239 (599)
T ss_pred EEecCHHHHHHHHhhccC-CCCEEEEEEcCCCeEEEEEEEEcCCeEEEEEEcCCCCCCHHHHHHHHHHHHHHhhCCCCCC
Confidence 999999999999998764 5678999999999999999999999999999999999999999999999999887654 36
Q ss_pred CHHHHHHHHHHHHHHHHHcccccceEEEEEecCCceEEEEeCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccceEEE
Q psy15216 876 SYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVIL 955 (2602)
Q Consensus 876 ~~~~~~~l~~~~e~~K~~LS~~~~~~~~i~~~~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~a~~~~~~i~~V~L 955 (2602)
+++.+.+|+.+||++|+.||...++.+.+++ +|.+++++|||++|+++++|+++++.++|+++|+++++++.+|+.|+|
T Consensus 240 ~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~-~g~~~~~~itr~efe~l~~~ll~~i~~~i~~~L~~a~~~~~~id~ViL 318 (599)
T TIGR01991 240 NPEDQRLLLQAARAAKEALTDAESVEVDFTL-DGKDFKGKLTRDEFEALIQPLVQKTLSICRRALRDAGLSVEEIKGVVL 318 (599)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCceEEEEEEE-CCcEEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCCEEEE
Confidence 7888999999999999999999998888876 678999999999999999999999999999999999999999999999
Q ss_pred ecCccchHHHHHHHHhhccCcccCcCCcchHhHHHHHHHhHHhcCCCCCCCceeeeccccccceEeeeccEEEEEEecCC
Q psy15216 956 VGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNT 1035 (2602)
Q Consensus 956 vGG~sr~P~v~~~l~~~f~~~~~~~~~p~~aVa~GAa~~a~~l~~~~~~~~~~~~~dv~~~~~gi~~~~~~~~~ii~~~t 1035 (2602)
|||+||||+|+++|+++|+..+..+.||++|||+|||++|+++++... ..++.+.|++|++||+++.++.+.++||||+
T Consensus 319 vGGssriP~V~~~l~~~f~~~~~~~~npdeaVA~GAai~a~~l~~~~~-~~~~~l~dv~p~slgi~~~~g~~~~ii~rnt 397 (599)
T TIGR01991 319 VGGSTRMPLVRRAVAELFGQEPLTDIDPDQVVALGAAIQADLLAGNRI-GNDLLLLDVTPLSLGIETMGGLVEKIIPRNT 397 (599)
T ss_pred ECCcCCChHHHHHHHHHhCCCCCCCCCCcHHHHHHHHHHHHHhccccc-cCceEEEEeeeeeeEEEecCCEEEEEEeCCC
Confidence 999999999999999999988888999999999999999999987654 3468999999999999999999999999999
Q ss_pred CCCCCcEEEEEeccccccceeeeEeecCccccccCceeeeeEecCCCCCCCCccEEEEEEEECCCeeEEEEEEEecCCce
Q psy15216 1036 TIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYEKISGKK 1115 (2602)
Q Consensus 1036 ~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~i~~~~~g~~~i~v~f~~d~~g~l~v~a~~~~~g~~ 1115 (2602)
+||+++++.|+|..|+|+.+.|.|||||+..+.+|..||+|.|+++||.++|.++|+|+|+||.||+|+|++++..||++
T Consensus 398 ~iP~~~~~~~~t~~d~q~~v~i~i~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~gil~V~a~~~~t~~~ 477 (599)
T TIGR01991 398 PIPVARAQEFTTYKDGQTAMVIHVVQGERELVEDCRSLARFELRGIPPMVAGAARIRVTFQVDADGLLTVSAQEQSTGVE 477 (599)
T ss_pred cCCccceEEEEEccCCCeEEEEEEEeecccccccCceEEEEEEcCCCCCCCCCCcEEEEEEECCCCeEEEEEEECCCCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCCCHHHHHhhh
Q psy15216 1116 KFITIKPFYNMNLDEIKNGA 1135 (2602)
Q Consensus 1116 ~~~~~~~~~~l~~~~i~~~~ 1135 (2602)
..+.+....+||++||++++
T Consensus 478 ~~~~i~~~~~l~~~~i~~~~ 497 (599)
T TIGR01991 478 QSIQVKPSYGLSDEEIERML 497 (599)
T ss_pred EEEecccccCCCHHHHHHHH
Confidence 99999888889999999986
|
The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK. |
| >PRK05183 hscA chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-80 Score=829.06 Aligned_cols=507 Identities=57% Similarity=0.855 Sum_probs=470.6
Q ss_pred hhhcccCCCccccc-CCceEEEEEcCcccEEEEEEECCeeEEEeCCCCCccccEEEEEecCCcEEEcHHHHhhhccCCCC
Q psy15216 621 ALLQISEPDDISVK-NKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 699 (2602)
Q Consensus 621 ~~l~~~~p~~~~~~-~~~~vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~v~~~~~~~~~vG~~A~~~~~~~p~~ 699 (2602)
.++.+++|.+++.+ ..+++||||||||||+||++.+|++++++|..|++.+||+|+|.+++ ++||..|+.+...+|.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~~-~~vG~~A~~~~~~~p~~ 80 (616)
T PRK05183 2 ALLQISEPGQSAAPHQRRLAVGIDLGTTNSLVATVRSGQAEVLPDEQGRVLLPSVVRYLEDG-IEVGYEARANAAQDPKN 80 (616)
T ss_pred ceEEecCCCCCCCcccCCeEEEEEeccccEEEEEEECCEEEEEEcCCCCeecCeEEEEcCCC-EEEcHHHHHhhHhCchh
Confidence 35667888776554 45689999999999999999999999999999999999999998775 99999999999999999
Q ss_pred chhhhhhhhCCCCCCCCC--CCCCeeee-cCCCceEEEEeCceeCHHHHHHHHHHHHHHHHHHhhcCccceEEEEEcCCC
Q psy15216 700 TISSIKRFIARDLKNINT--NSFPYDFQ-NKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYF 776 (2602)
Q Consensus 700 ~~~~~K~~lg~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~f 776 (2602)
+++++||+||+++.+++. ..+||.+. ..+|.+.+...++.++|+++++++|++|++.+++++|.++.++|||||+||
T Consensus 81 ti~~~KrliG~~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~ei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f 160 (616)
T PRK05183 81 TISSVKRFMGRSLADIQQRYPHLPYQFVASENGMPLIRTAQGLKSPVEVSAEILKALRQRAEETLGGELDGAVITVPAYF 160 (616)
T ss_pred hHHHHHHHhCCCchhhhhhhhcCCeEEEecCCCceEEEecCCeEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCC
Confidence 999999999999877543 36788887 447778787777789999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCceEEEechhHHHHHHhhhccCcccceEEEEEeCCceEEEEEEEEECCEEEEEEEecCCCCcch
Q psy15216 777 NDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGD 856 (2602)
Q Consensus 777 ~~~qr~~~~~Aa~~AGl~~~~li~EPtAAAl~y~~~~~~~~~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~ 856 (2602)
++.||+++++||++|||++++||+||+|||++|++... .+++++|||+||||||+||+++.++.++|+++.||.++||+
T Consensus 161 ~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlay~~~~~-~~~~vlV~DlGGGT~DvSv~~~~~~~~evlat~gd~~lGG~ 239 (616)
T PRK05183 161 DDAQRQATKDAARLAGLNVLRLLNEPTAAAIAYGLDSG-QEGVIAVYDLGGGTFDISILRLSKGVFEVLATGGDSALGGD 239 (616)
T ss_pred CHHHHHHHHHHHHHcCCCeEEEecchHHHHHHhhcccC-CCCEEEEEECCCCeEEEEEEEeeCCEEEEEEecCCCCcCHH
Confidence 99999999999999999999999999999999998754 46799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcc-CCHHHHHHHHHHHHHHHHHcccccceEEEEEecCCceEEEEeCHHHHHHHHHHHHHHHHHH
Q psy15216 857 DFDYCLFSWIVKNAFLKK-LSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNRTILL 935 (2602)
Q Consensus 857 ~~D~~l~~~l~~~~~~~~-~~~~~~~~l~~~~e~~K~~LS~~~~~~~~i~~~~~~~~~~~itr~~fe~l~~~~~~~~~~~ 935 (2602)
+||++|++|+.+++..+. .+++.+.+|+.+||++|+.||...++.+.+...++ .|||++|+++++|+++++..+
T Consensus 240 d~D~~l~~~~~~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~~~-----~itr~efe~l~~~l~~~~~~~ 314 (616)
T PRK05183 240 DFDHLLADWILEQAGLSPRLDPEDQRLLLDAARAAKEALSDADSVEVSVALWQG-----EITREQFNALIAPLVKRTLLA 314 (616)
T ss_pred HHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHHHHhcCCCceEEEEEecCCC-----eEcHHHHHHHHHHHHHHHHHH
Confidence 999999999999986554 67888999999999999999999888888753322 499999999999999999999
Q ss_pred HHHHHHHcCCCccccceEEEecCccchHHHHHHHHhhccCcccCcCCcchHhHHHHHHHhHHhcCCCCCCCceeeecccc
Q psy15216 936 SSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIP 1015 (2602)
Q Consensus 936 i~~~l~~a~~~~~~i~~V~LvGG~sr~P~v~~~l~~~f~~~~~~~~~p~~aVa~GAa~~a~~l~~~~~~~~~~~~~dv~~ 1015 (2602)
++++|+++++.+.+|+.|+||||+||||+|++.|+++||..+..+.||++|||+|||++|+++++... ..++.+.|++|
T Consensus 315 i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~npdeaVA~GAAi~a~~l~~~~~-~~~~~l~dv~p 393 (616)
T PRK05183 315 CRRALRDAGVEADEVKEVVMVGGSTRVPLVREAVGEFFGRTPLTSIDPDKVVAIGAAIQADILAGNKP-DSDMLLLDVIP 393 (616)
T ss_pred HHHHHHHcCCCcccCCEEEEECCcccChHHHHHHHHHhccCcCcCCCchHHHHHHHHHHHHHhccccc-cCceEEEeecc
Confidence 99999999999999999999999999999999999999988888999999999999999999988654 34689999999
Q ss_pred ccceEeeeccEEEEEEecCCCCCCCcEEEEEeccccccceeeeEeecCccccccCceeeeeEecCCCCCCCCccEEEEEE
Q psy15216 1016 LSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTY 1095 (2602)
Q Consensus 1016 ~~~gi~~~~~~~~~ii~~~t~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~i~~~~~g~~~i~v~f 1095 (2602)
++||+++.++.+.+|||||++||+++++.|++..|+|+.+.|.|||||+..+.+|..||+|.|+++||.|+|.++|+|+|
T Consensus 394 ~slgi~~~~g~~~~ii~r~t~iP~~~~~~~~t~~d~q~~v~i~v~qGe~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f 473 (616)
T PRK05183 394 LSLGLETMGGLVEKIIPRNTTIPVARAQEFTTFKDGQTAMAIHVVQGERELVADCRSLARFELRGIPPMAAGAARIRVTF 473 (616)
T ss_pred ccccceecCCeEEEEEeCCCcccccccEEEEeccCCCeEEEEEEecccccccccccEEEEEEeCCCCCCCCCCccEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCeeEEEEEEEecCCceEEEEEecCCCCCHHHHHhhh
Q psy15216 1096 QVDADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKNGA 1135 (2602)
Q Consensus 1096 ~~d~~g~l~v~a~~~~~g~~~~~~~~~~~~l~~~~i~~~~ 1135 (2602)
++|.||+|+|+|+++.||++..+++....+||++||++++
T Consensus 474 ~~d~~Gil~V~a~~~~~~~~~~~~i~~~~~ls~~~i~~~~ 513 (616)
T PRK05183 474 QVDADGLLSVTAMEKSTGVEASIQVKPSYGLTDDEIARML 513 (616)
T ss_pred EECCCCeEEEEEEEcCCCcEEEecccccccCCHHHHHHHH
Confidence 9999999999999999999999999887789999999987
|
|
| >PRK13411 molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-80 Score=834.47 Aligned_cols=495 Identities=41% Similarity=0.624 Sum_probs=463.6
Q ss_pred eEEEEEcCcccEEEEEEECCeeEEEeCCCCCccccEEEEEecCCcEEEcHHHHhhhccCCCCchhhhhhhhCCCCCCCCC
Q psy15216 638 VSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNINT 717 (2602)
Q Consensus 638 ~vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~v~~~~~~~~~vG~~A~~~~~~~p~~~~~~~K~~lg~~~~~~~~ 717 (2602)
.+||||||||||+||++++|++.+|+|.+|++.+||+|+|.++++++||..|+.+..++|.++++++||+||+++.+...
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~~ 82 (653)
T PRK13411 3 KVIGIDLGTTNSCVAVLEGGKPIVIPNSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVTNAENTVYSIKRFIGRRWDDTEE 82 (653)
T ss_pred cEEEEEeCcccEEEEEEECCEEEEEECCCCCccCceEEEEeCCCCEEEcHHHHHhhhhCcccchHHHHHHhCCCccchhH
Confidence 58999999999999999999999999999999999999998777899999999999999999999999999999877543
Q ss_pred --CCCCeeee-cCCCceEEEEeCceeCHHHHHHHHHHHHHHHHHHhhcCccceEEEEEcCCCCHHHHHHHHHHHHHcCCc
Q psy15216 718 --NSFPYDFQ-NKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLN 794 (2602)
Q Consensus 718 --~~~~~~~~-~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~~~~Aa~~AGl~ 794 (2602)
..+||.+. ..++.+.+...+..++|+++++++|++|++.|+.++|.++.++|||||+||++.||++|++||++|||+
T Consensus 83 ~~~~~~~~~v~~~~~~~~~~i~~~~~~peei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~AGl~ 162 (653)
T PRK13411 83 ERSRVPYTCVKGRDDTVNVQIRGRNYTPQEISAMILQKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKDAGTIAGLE 162 (653)
T ss_pred HhhcCCceEEecCCCceEEEECCEEECHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCcHHHHHHHHHHHHcCCC
Confidence 37888876 556777777778899999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEechhHHHHHHhhhccCcccceEEEEEeCCceEEEEEEEEECCEEEEEEEecCCCCcchHHHHHHHHHHHHHHhhcc
Q psy15216 795 VLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKK 874 (2602)
Q Consensus 795 ~~~li~EPtAAAl~y~~~~~~~~~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~~ 874 (2602)
+++||+||+|||++|++.+...++++||||+||||||+||+++.++.++|+++.|+.++||.+||++|++|+.++|..+.
T Consensus 163 v~~li~EPtAAAl~y~~~~~~~~~~vlV~DlGgGT~dvsi~~~~~~~~~V~at~gd~~LGG~dfD~~l~~~l~~~f~~~~ 242 (653)
T PRK13411 163 VLRIINEPTAAALAYGLDKQDQEQLILVFDLGGGTFDVSILQLGDGVFEVKATAGNNHLGGDDFDNCIVDWLVENFQQQE 242 (653)
T ss_pred eEEEecchHHHHHHhcccccCCCCEEEEEEcCCCeEEEEEEEEeCCEEEEEEEecCCCcCHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999998766567889999999999999999999999999999999999999999999999999986543
Q ss_pred -----CCHHHHHHHHHHHHHHHHHcccccceEEEEEec-----CCceEEEEeCHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy15216 875 -----LSYKDVNILMIKSREIKELLSYQSSVKLNVKLS-----DKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDAN 944 (2602)
Q Consensus 875 -----~~~~~~~~l~~~~e~~K~~LS~~~~~~~~i~~~-----~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~a~ 944 (2602)
.+++.+.+|+.+||++|+.||...++.+.++.. ++.+++++|||++|+++++|+++++..+++++|++++
T Consensus 243 ~~d~~~~~~~~~rL~~~aE~aK~~LS~~~~~~i~i~~~~~d~~~~~~~~~~itR~~fe~l~~~l~~~~~~~i~~~L~~a~ 322 (653)
T PRK13411 243 GIDLSQDKMALQRLREAAEKAKIELSSMLTTSINLPFITADETGPKHLEMELTRAKFEELTKDLVEATIEPMQQALKDAG 322 (653)
T ss_pred CCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeccCCCCCeeEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 467788999999999999999999988888732 2357899999999999999999999999999999999
Q ss_pred CCccccceEEEecCccchHHHHHHHHhhcc-CcccCcCCcchHhHHHHHHHhHHhcCCCCCCCceeeeccccccceEeee
Q psy15216 945 LTIKDINNVILVGGSTRMKHIHEGVSNFFK-TTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETI 1023 (2602)
Q Consensus 945 ~~~~~i~~V~LvGG~sr~P~v~~~l~~~f~-~~~~~~~~p~~aVa~GAa~~a~~l~~~~~~~~~~~~~dv~~~~~gi~~~ 1023 (2602)
+.+.+|+.|+||||+||||+||+.|+++|+ .++..+.||++|||+|||++|+++++. .+++.+.|++|++||+++.
T Consensus 323 ~~~~~id~ViLvGGssriP~v~~~l~~~f~~~~~~~~~npdeaVA~GAAi~aa~l~~~---~~~~~~~dv~p~slgi~~~ 399 (653)
T PRK13411 323 LKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVNPDEAVALGAAIQAGVLGGE---VKDLLLLDVTPLSLGIETL 399 (653)
T ss_pred CCHHHCcEEEEECCCCCcchHHHHHHHHcCCcCcCCCCCchHHHHHHHHHHHHhhcCC---ccceeeeecccceeeEEec
Confidence 999999999999999999999999999996 678889999999999999999999875 3468899999999999999
Q ss_pred ccEEEEEEecCCCCCCCcEEEEEeccccccceeeeEeecCccccccCceeeeeEecCCCCCCCCccEEEEEEEECCCeeE
Q psy15216 1024 GGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADGLL 1103 (2602)
Q Consensus 1024 ~~~~~~ii~~~t~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~i~~~~~g~~~i~v~f~~d~~g~l 1103 (2602)
++.|.+||+||++||+++++.|++..|+|+.+.|.||||++..+++|..||+|.|.++||.++|.++|+|+|++|.||+|
T Consensus 400 ~~~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~Gil 479 (653)
T PRK13411 400 GEVFTKIIERNTTIPTSKSQVFSTATDGQTSVEIHVLQGERAMAKDNKSLGKFLLTGIPPAPRGVPQIEVSFEIDVNGIL 479 (653)
T ss_pred CCceEEEEECCCcccceeeEEEEeccCCCeEEEEEEEEecCcccccCceeeEEEEcCCCCCCCCCccEEEEEEECCCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecCCceEEEEEecCCCCCHHHHHhhh
Q psy15216 1104 SIFAYEKISGKKKFITIKPFYNMNLDEIKNGA 1135 (2602)
Q Consensus 1104 ~v~a~~~~~g~~~~~~~~~~~~l~~~~i~~~~ 1135 (2602)
+|++++..||++..+++....+||++||++++
T Consensus 480 ~v~a~d~~t~~~~~~~i~~~~~ls~~ei~~~~ 511 (653)
T PRK13411 480 KVSAQDQGTGREQSIRITNTGGLSSNEIERMR 511 (653)
T ss_pred EEEEeeccCCceEeeEEeccccchHHHHHHHH
Confidence 99999999999999999887789999999987
|
|
| >KOG0102|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-81 Score=741.58 Aligned_cols=497 Identities=43% Similarity=0.636 Sum_probs=469.5
Q ss_pred cCcceEEEEEcCcccEEEEEEECCeEEEEeCCCCCccccEEEEEecCCcEEecHHHHhhhccCCCCchhhhhhhcCCCCC
Q psy15216 2030 KNKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLK 2109 (2602)
Q Consensus 2030 ~~~~~vvGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~~~~~~vG~~A~~~~~~~p~~~~~~~K~~lg~~~~ 2109 (2602)
.-..-++|||+||||||++++.++.|.++.|..|.|.+||+|+|..|+++++|..|+.+...||.++++..||+||+++.
T Consensus 24 ~~~~~vigidlgttnS~va~meg~~~kiienaegqrtTpsvva~~kdge~Lvg~~akrqav~n~~ntffatKrligRrf~ 103 (640)
T KOG0102|consen 24 KVKGKVIGIDLGTTNSCVAVMEGKKPKIIENAEGQRTTPSVVAFTKDGERLVGMPAKRQAVTNPENTFFATKRLIGRRFD 103 (640)
T ss_pred CCCCceeeEeeeccceeEEEEeCCCceEeecccccccCCceEEEeccccEEecchhhhhhccCCCceEEEehhhhhhhcc
Confidence 34456999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCC----CCCCeeee-cCCCceEEEecCceeCHHHHHHHHHHHHHHHHHHhhccccceEEEeeCCCCCHHHHHHHHHHH
Q psy15216 2110 NINT----NSFPYDFQ-NKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAA 2184 (2602)
Q Consensus 2110 ~~~~----~~~~~~~~-~~~g~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~l~~Aa 2184 (2602)
++.. +..||++. ..+|...+...+..++|.++.+++|.++++.|+.+++.++.++|+||||||++.||+++++|.
T Consensus 104 d~evq~~~k~vpyKiVk~~ngdaw~e~~G~~~spsqig~~vl~kmk~tae~yl~~~v~~avvtvpAyfndsqRqaTkdag 183 (640)
T KOG0102|consen 104 DPEVQKDIKQVPYKIVKASNGDAWVEARGKQYSPSQIGAFVLMKMKETAEAYLGKKVKNAVITVPAYFNDSQRQATKDAG 183 (640)
T ss_pred CHHHHHHHHhCCcceEEccCCcEEEEeCCeEecHHHHHHHHHHHHHHHHHHHcCchhhheeeccHHHHhHHHHHHhHhhh
Confidence 8643 56788864 577888888888999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceeEeechhHHHHHHhhhccCCCCceEEEEEeCCceEEEEEEEEeCCEEEEEEEecCCCCchhHHHHHHHHHHHH
Q psy15216 2185 KLAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVK 2264 (2602)
Q Consensus 2185 ~~AGl~~~~li~EP~AAAl~y~~~~~~~~~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~ 2264 (2602)
++||++++++|+||||||++|+++... .+.++|||+||||||+||+.+.++.|+|.++.||.++||+|||..++.|+..
T Consensus 184 ~iagl~vlrvineptaaalaygld~k~-~g~iaV~dLgggtfdisilei~~gvfevksTngdtflggedfd~~~~~~~v~ 262 (640)
T KOG0102|consen 184 QIAGLNVLRVINEPTAAALAYGLDKKE-DGVIAVFDLGGGTFDISILEIEDGVFEVKSTNGDTHLGGEDFDNALVRFIVS 262 (640)
T ss_pred hhccceeeccCCccchhHHhhcccccC-CCceEEEEcCCceeeeeeehhccceeEEEeccCccccChhHHHHHHHHHHHH
Confidence 999999999999999999999998766 7899999999999999999999999999999999999999999999999998
Q ss_pred HHhhhcC-----ChhHHHHHHHHHHHHHHHhcccceEEEEEEe-----cCCceEEEEcCHHHHHHHHHHHHHHHHHHHHH
Q psy15216 2265 NAFLKKL-----SYKDVNILMIKSREIKELLSYQSSVKLNVKL-----SDKKIVNITIDMKQFFTITQHLVNRTILLSSK 2334 (2602)
Q Consensus 2265 ~~~~~~~-----~~~~~~~l~~~~e~~K~~ls~~~~~~~~i~~-----~~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~ 2334 (2602)
.|+.... ....+++++.++|++|+.||+...+.+++++ .+...+++++||.+||+++.++++|+++.+.+
T Consensus 263 ~fk~~~gidl~kd~~a~qrl~eaaEkaKielSs~~~tei~lp~iTada~gpkh~~i~~tr~efe~~v~~lI~Rti~p~~~ 342 (640)
T KOG0102|consen 263 EFKKEEGIDLTKDRMALQRLREAAEKAKIELSSRQQTEINLPFITADASGPKHLNIELTRGEFEELVPSLIARTIEPCKK 342 (640)
T ss_pred hhhcccCcchhhhHHHHHHHHHHHHhhhhhhhhcccceeccceeeccCCCCeeEEEeecHHHHHHhhHHHHHhhhhHHHH
Confidence 7543321 2346789999999999999999999998884 34578999999999999999999999999999
Q ss_pred HHHHcCCCccccceEEEEeCccchHHHHHHHHhhcCCcccCCCCccchhhhHHHHHhHHhcCCCCCCCceeeeccccccc
Q psy15216 2335 ALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSL 2414 (2602)
Q Consensus 2335 ~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~aVa~GAa~~a~~~~~~~~~~~~~~~~d~~~~~~ 2414 (2602)
+|++|++..+||++|+||||++|||.|++.|++.||+.+....||+++||.|||++++.+++.- .++.+.||+|.++
T Consensus 343 aL~dA~~~~~di~EV~lvggmtrmpkv~s~V~e~fgk~p~~~vnPdeava~GAaiqggvl~geV---kdvlLLdVtpLsL 419 (640)
T KOG0102|consen 343 ALRDASLSSSDINEVILVGGMTRMPKVQSTVKELFGKGPSKGVNPDEAVAGGAAIQGGVLSGEV---KDVLLLDVTPLSL 419 (640)
T ss_pred HHHhccCChhhhhhhhhhcchhhcHHHHHHHHHHhCCCCCCCcCCcchhccchhhccchhhccc---cceeeeecchHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999863 3589999999999
Q ss_pred eEEeeccEEEEEEecCCcCCCCcEEEEEeecccccceeEEEeecCcccccCCceeEEEEeeCCCCCCCCccEEEEEEEEc
Q psy15216 2415 GIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVD 2494 (2602)
Q Consensus 2415 gi~~~~~~~~~ii~k~t~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~f~id 2494 (2602)
||++.+|.|..+|+|||.||++++..|.+..|+|+.+.|.|||||++.+.+|.++|+|.+.++||.|+|.|+|+|+|+||
T Consensus 420 gietlggvft~Li~rnttIptkksqvfstaadgqt~V~ikv~qgere~~~dnk~lG~f~l~gipp~pRgvpqieVtfDId 499 (640)
T KOG0102|consen 420 GIETLGGVFTKLIPRNTTIPTKKSQVFSTAADGQTQVEIKVFQGEREMVNDNKLLGSFILQGIPPAPRGVPQIEVTFDID 499 (640)
T ss_pred HHHhhhhhheecccCCcccCchhhhheeecccCCceEEEEeeechhhhhccCcccceeeecccCCCCCCCCceeEEEeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEEEeecCCcEEEEEEecCCCCChHHHhcc
Q psy15216 2495 ADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKNG 2530 (2602)
Q Consensus 2495 ~~g~l~V~a~~~~tg~~~~~~i~~~~~l~~~ei~~~ 2530 (2602)
+||+++|+|.|+.|||++.+++...++||++||+..
T Consensus 500 anGI~~vsA~dk~t~K~qsi~i~~sggLs~~ei~~m 535 (640)
T KOG0102|consen 500 ANGIGTVSAKDKGTGKSQSITIASSGGLSKDEIELM 535 (640)
T ss_pred CCceeeeehhhcccCCccceEEeecCCCCHHHHHHH
Confidence 999999999999999999999999999999999953
|
|
| >PTZ00186 heat shock 70 kDa precursor protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-79 Score=814.27 Aligned_cols=492 Identities=39% Similarity=0.626 Sum_probs=452.1
Q ss_pred ceEEEEEcCcccEEEEEEECCeEEEEeCCCCCccccEEEEEecCCcEEecHHHHhhhccCCCCchhhhhhhcCCCCCCCC
Q psy15216 2033 CVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNIN 2112 (2602)
Q Consensus 2033 ~~vvGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~~~~~~vG~~A~~~~~~~p~~~~~~~K~~lg~~~~~~~ 2112 (2602)
..+||||||||||+||+++++++++++|..|.+.+||+|+|.. ++++||..|+.+...+|.++++++||+||+++.+..
T Consensus 27 ~~viGIDLGTTnS~vA~~~~~~~~ii~n~~g~r~tPS~V~f~~-~~~lvG~~Ak~~~~~~p~~ti~~~KRliG~~~~d~~ 105 (657)
T PTZ00186 27 GDVIGVDLGTTYSCVATMDGDKARVLENSEGFRTTPSVVAFKG-SEKLVGLAAKRQAITNPQSTFYAVKRLIGRRFEDEH 105 (657)
T ss_pred ceEEEEEeCcCeEEEEEEeCCceEEeecCCCCcccceEEEECC-CCEEEcHHHHHhhhhCchhHHHHHHHHhccccccHH
Confidence 4699999999999999999999999999999999999999974 567999999999999999999999999999876642
Q ss_pred ----CCCCCeeee-cCCCceEEEe-cCceeCHHHHHHHHHHHHHHHHHHhhccccceEEEeeCCCCCHHHHHHHHHHHHH
Q psy15216 2113 ----TNSFPYDFQ-NKFGMLHIKT-ISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKL 2186 (2602)
Q Consensus 2113 ----~~~~~~~~~-~~~g~~~~~~-~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~l~~Aa~~ 2186 (2602)
...+||++. ..++...+.. .+..++|+++++++|++|++.|+.++|.++.++|||||+||++.||+++++||++
T Consensus 106 v~~~~~~~p~~vv~~~~~~~~i~~~~~~~~speeisa~iL~~Lk~~Ae~~lg~~v~~aVITVPayF~~~qR~at~~Aa~~ 185 (657)
T PTZ00186 106 IQKDIKNVPYKIVRAGNGDAWVQDGNGKQYSPSQIGAFVLEKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAGTI 185 (657)
T ss_pred HHHhhccCcEEEEEcCCCceEEEeCCCeEEcHHHHHHHHHHHHHHHHHHHhCCccceEEEEECCCCChHHHHHHHHHHHH
Confidence 356888874 3445444443 3567999999999999999999999999999999999999999999999999999
Q ss_pred cCCceeEeechhHHHHHHhhhccCCCCceEEEEEeCCceEEEEEEEEeCCEEEEEEEecCCCCchhHHHHHHHHHHHHHH
Q psy15216 2187 AGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNA 2266 (2602)
Q Consensus 2187 AGl~~~~li~EP~AAAl~y~~~~~~~~~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~ 2266 (2602)
|||++++||+||+|||++|+.... .+++++|||+||||||+||+++.++.++|+++.||.++||+|||.+|++|+.++
T Consensus 186 AGl~v~rlInEPtAAAlayg~~~~-~~~~vlV~DlGGGT~DvSil~~~~g~~~V~at~Gd~~LGG~DfD~~l~~~~~~~- 263 (657)
T PTZ00186 186 AGLNVIRVVNEPTAAALAYGMDKT-KDSLIAVYDLGGGTFDISVLEIAGGVFEVKATNGDTHLGGEDFDLALSDYILEE- 263 (657)
T ss_pred cCCCeEEEEcChHHHHHHHhccCC-CCCEEEEEECCCCeEEEEEEEEeCCEEEEEEecCCCCCCchhHHHHHHHHHHHH-
Confidence 999999999999999999987654 467999999999999999999999999999999999999999999999999987
Q ss_pred hhhcCC------hhHHHHHHHHHHHHHHHhcccceEEEEEEec-----CCceEEEEcCHHHHHHHHHHHHHHHHHHHHHH
Q psy15216 2267 FLKKLS------YKDVNILMIKSREIKELLSYQSSVKLNVKLS-----DKKIVNITIDMKQFFTITQHLVNRTILLSSKA 2335 (2602)
Q Consensus 2267 ~~~~~~------~~~~~~l~~~~e~~K~~ls~~~~~~~~i~~~-----~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~ 2335 (2602)
|.++.+ ...+.+|+.+||++|+.||...++.+.++.. ++.+++++|||++|+++++|+++++..+++++
T Consensus 264 f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~i~~~~~g~~~~~~~ItR~efe~l~~~l~~r~~~~v~~~ 343 (657)
T PTZ00186 264 FRKTSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFITANADGAQHIQMHISRSKFEGITQRLIERSIAPCKQC 343 (657)
T ss_pred HhhhcCCCcccCHHHHHHHHHHHHHHHHHhCCCCceEEEEeeeccCCCCCcceEEEecHHHHHHHHHHHHHHHHHHHHHH
Confidence 444332 3466789999999999999999888888732 22458899999999999999999999999999
Q ss_pred HHHcCCCccccceEEEEeCccchHHHHHHHHhhcCCcccCCCCccchhhhHHHHHhHHhcCCCCCCCceeeeccccccce
Q psy15216 2336 LMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLG 2415 (2602)
Q Consensus 2336 l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~aVa~GAa~~a~~~~~~~~~~~~~~~~d~~~~~~g 2415 (2602)
|+++++++.+|+.|+||||+||||.||++|+++||.++....||++|||+|||++|+.+++.. .++.+.|++|++||
T Consensus 344 L~~a~~~~~dId~VvLVGGssriP~V~~~l~~~fg~~~~~~~nPdeaVA~GAAi~a~~l~~~~---~~~~l~Dv~p~slg 420 (657)
T PTZ00186 344 MKDAGVELKEINDVVLVGGMTRMPKVVEEVKKFFQKDPFRGVNPDEAVALGAATLGGVLRGDV---KGLVLLDVTPLSLG 420 (657)
T ss_pred HHHcCCChhhCCEEEEECCcccChHHHHHHHHHhCCCccccCCCchHHHHhHHHHHHHhcccc---CceEEEeecccccc
Confidence 999999999999999999999999999999999998888999999999999999999998752 35889999999999
Q ss_pred EEeeccEEEEEEecCCcCCCCcEEEEEeecccccceeEEEeecCcccccCCceeEEEEeeCCCCCCCCccEEEEEEEEcC
Q psy15216 2416 IETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDA 2495 (2602)
Q Consensus 2416 i~~~~~~~~~ii~k~t~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~f~id~ 2495 (2602)
|++.+|.+.+||+||++||+++++.|+|..|||+.+.|.|||||+..+++|..||+|.|.++||.|+|.++|+|+|+||.
T Consensus 421 ie~~~g~~~~iI~rnt~iP~~~~~~f~t~~dnQ~~v~i~i~qGe~~~~~~n~~lg~~~l~~ip~~~~G~~~I~Vtf~iD~ 500 (657)
T PTZ00186 421 IETLGGVFTRMIPKNTTIPTKKSQTFSTAADNQTQVGIKVFQGEREMAADNQMMGQFDLVGIPPAPRGVPQIEVTFDIDA 500 (657)
T ss_pred ceecCCEEEEEEeCCCEeeEEEeeccccccCCCceEEEEEEEecccccccccccceEEEcCCCCCCCCCCcEEEEEEEcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEEEeecCCcEEEEEEecCCCCChHHHhcc
Q psy15216 2496 DGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKNG 2530 (2602)
Q Consensus 2496 ~g~l~V~a~~~~tg~~~~~~i~~~~~l~~~ei~~~ 2530 (2602)
||+|+|+|+++.||++.+++|...++||++||++.
T Consensus 501 nGiL~V~a~d~~tg~~~~~~i~~~~~ls~~~i~~~ 535 (657)
T PTZ00186 501 NGICHVTAKDKATGKTQNITITANGGLSKEQIEQM 535 (657)
T ss_pred CCEEEEEEEEccCCcEEEEEeccCccCCHHHHHHH
Confidence 99999999999999999999998888999999864
|
|
| >PTZ00400 DnaK-type molecular chaperone; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-79 Score=824.17 Aligned_cols=494 Identities=41% Similarity=0.625 Sum_probs=462.7
Q ss_pred eEEEEEcCcccEEEEEEECCeeEEEeCCCCCccccEEEEEecCCcEEEcHHHHhhhccCCCCchhhhhhhhCCCCCCCC-
Q psy15216 638 VSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNIN- 716 (2602)
Q Consensus 638 ~vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~v~~~~~~~~~vG~~A~~~~~~~p~~~~~~~K~~lg~~~~~~~- 716 (2602)
.+||||||||||+||++++|.+++|+|..|++.+||+|+|.+++++++|..|+.+..++|.++++++||+||+++.+..
T Consensus 42 ~viGIDlGTt~s~va~~~~~~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~~ 121 (663)
T PTZ00400 42 DIVGIDLGTTNSCVAIMEGSQPKVIENSEGMRTTPSVVAFTEDGQRLVGIVAKRQAVTNPENTVFATKRLIGRRYDEDAT 121 (663)
T ss_pred cEEEEEECcccEEEEEEeCCeeEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhHHhCCcceehhhhhhcCCCcCcHHH
Confidence 5899999999999999999999999999999999999999877789999999999999999999999999999987742
Q ss_pred ---CCCCCeeee-cCCCceEEEEeCceeCHHHHHHHHHHHHHHHHHHhhcCccceEEEEEcCCCCHHHHHHHHHHHHHcC
Q psy15216 717 ---TNSFPYDFQ-NKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAG 792 (2602)
Q Consensus 717 ---~~~~~~~~~-~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~~~~Aa~~AG 792 (2602)
...+||.+. ..++...+...+..++|+++++++|++|++.|+.++|.++.++|||||+||++.||++|++||++||
T Consensus 122 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~AG 201 (663)
T PTZ00400 122 KKEQKILPYKIVRASNGDAWIEAQGKKYSPSQIGAFVLEKMKETAESYLGRKVKQAVITVPAYFNDSQRQATKDAGKIAG 201 (663)
T ss_pred HhhhccCCeEEEecCCCceEEEECCEEECHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHHHHHHcC
Confidence 237899887 5567777777788999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEechhHHHHHHhhhccCcccceEEEEEeCCceEEEEEEEEECCEEEEEEEecCCCCcchHHHHHHHHHHHHHHhh
Q psy15216 793 LNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFL 872 (2602)
Q Consensus 793 l~~~~li~EPtAAAl~y~~~~~~~~~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~ 872 (2602)
|++++||+||+|||++|+.... .++.+||||+||||||+||+++.++.++|+++.|+.++||.+||++|++|+.++|..
T Consensus 202 l~v~~li~EptAAAlay~~~~~-~~~~vlV~DlGgGT~DvSv~~~~~g~~~v~a~~gd~~LGG~d~D~~l~~~l~~~f~~ 280 (663)
T PTZ00400 202 LDVLRIINEPTAAALAFGMDKN-DGKTIAVYDLGGGTFDISILEILGGVFEVKATNGNTSLGGEDFDQRILNYLIAEFKK 280 (663)
T ss_pred CceEEEeCchHHHHHHhccccC-CCcEEEEEeCCCCeEEEEEEEecCCeeEEEecccCCCcCHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999998754 467999999999999999999999999999999999999999999999999999865
Q ss_pred cc-----CCHHHHHHHHHHHHHHHHHcccccceEEEEEe-c----CCceEEEEeCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15216 873 KK-----LSYKDVNILMIKSREIKELLSYQSSVKLNVKL-S----DKKIVNITIDMKQFFTITQHLVNRTILLSSKALMD 942 (2602)
Q Consensus 873 ~~-----~~~~~~~~l~~~~e~~K~~LS~~~~~~~~i~~-~----~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~ 942 (2602)
+. .+++.+.+|+.+||++|+.||.+.++.+.++. . ++.++.++|||++|+++++|+++++.++++++|++
T Consensus 281 ~~~~~~~~~~~a~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~efe~l~~~l~~~~~~~i~~~L~~ 360 (663)
T PTZ00400 281 QQGIDLKKDKLALQRLREAAETAKIELSSKTQTEINLPFITADQSGPKHLQIKLSRAKLEELTHDLLKKTIEPCEKCIKD 360 (663)
T ss_pred hcCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEEEeeccCCCCceEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 46778899999999999999999988888873 2 22578999999999999999999999999999999
Q ss_pred cCCCccccceEEEecCccchHHHHHHHHhhccCcccCcCCcchHhHHHHHHHhHHhcCCCCCCCceeeeccccccceEee
Q psy15216 943 ANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIET 1022 (2602)
Q Consensus 943 a~~~~~~i~~V~LvGG~sr~P~v~~~l~~~f~~~~~~~~~p~~aVa~GAa~~a~~l~~~~~~~~~~~~~dv~~~~~gi~~ 1022 (2602)
+++.+.+|+.|+||||+||+|+||++|+++||.++....||++|||+|||++|+++++.. +++.+.|++|++||+++
T Consensus 361 a~~~~~~i~~ViLvGGssriP~v~~~l~~~f~~~~~~~~npdeaVA~GAAi~aa~l~~~~---~~~~~~dv~p~slgi~~ 437 (663)
T PTZ00400 361 AGVKKDELNDVILVGGMTRMPKVSETVKKIFGKEPSKGVNPDEAVAMGAAIQAGVLKGEI---KDLLLLDVTPLSLGIET 437 (663)
T ss_pred cCCCHHHCcEEEEECCccCChHHHHHHHHHhCCCcccCCCCccceeeccHHHHHhhcCCc---cceEEEeccccceEEEe
Confidence 999999999999999999999999999999998888999999999999999999998753 36889999999999999
Q ss_pred eccEEEEEEecCCCCCCCcEEEEEeccccccceeeeEeecCccccccCceeeeeEecCCCCCCCCccEEEEEEEECCCee
Q psy15216 1023 IGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADGL 1102 (2602)
Q Consensus 1023 ~~~~~~~ii~~~t~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~i~~~~~g~~~i~v~f~~d~~g~ 1102 (2602)
.++.|.++||||++||+++++.|++..|+|+.+.|.||||++..+.+|..||+|.|.++||.++|.++|+|+|++|.||+
T Consensus 438 ~~g~~~~ii~~~t~iP~~~~~~f~~~~d~q~~~~i~i~ege~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~id~~Gi 517 (663)
T PTZ00400 438 LGGVFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVFQGEREMAADNKLLGQFDLVGIPPAPRGVPQIEVTFDVDANGI 517 (663)
T ss_pred cCCeeEEEEecCccCCccceeeeeeccCCCceEEEEEEEecCccCCcCceeEEEEEcCCCCCCCCCceEEEEEEECCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEecCCceEEEEEecCCCCCHHHHHhhh
Q psy15216 1103 LSIFAYEKISGKKKFITIKPFYNMNLDEIKNGA 1135 (2602)
Q Consensus 1103 l~v~a~~~~~g~~~~~~~~~~~~l~~~~i~~~~ 1135 (2602)
|+|++.+..+|++..+++....+||++||+++.
T Consensus 518 l~v~a~~~~~~~~~~~~i~~~~~ls~~ei~~~~ 550 (663)
T PTZ00400 518 MNISAVDKSTGKKQEITIQSSGGLSDEEIEKMV 550 (663)
T ss_pred EEEEEEeccCCcEEEEEeeccccccHHHHHHHH
Confidence 999999999999999999887889999999986
|
|
| >PLN03184 chloroplast Hsp70; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-79 Score=820.34 Aligned_cols=495 Identities=40% Similarity=0.625 Sum_probs=461.3
Q ss_pred ceEEEEEcCcccEEEEEEECCeeEEEeCCCCCccccEEEEEecCCcEEEcHHHHhhhccCCCCchhhhhhhhCCCCCCCC
Q psy15216 637 CVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNIN 716 (2602)
Q Consensus 637 ~~vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~v~~~~~~~~~vG~~A~~~~~~~p~~~~~~~K~~lg~~~~~~~ 716 (2602)
..+||||||||||+||++++|+|++++|..|++.+||+|+|.+++++++|..|+.+...+|.++++++||+||+++.+++
T Consensus 39 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~ 118 (673)
T PLN03184 39 EKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSEVD 118 (673)
T ss_pred CCEEEEEeCcCcEEEEEEECCeEEEEECCCCCeecceEEEEcCCCCEEECHHHHHhhhhCchhhhHHHHHhhCCCcchhh
Confidence 36899999999999999999999999999999999999999877789999999999999999999999999999987653
Q ss_pred C--CCCCeeee-cCCCceEEEE--eCceeCHHHHHHHHHHHHHHHHHHhhcCccceEEEEEcCCCCHHHHHHHHHHHHHc
Q psy15216 717 T--NSFPYDFQ-NKFGMLHIKT--ISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLA 791 (2602)
Q Consensus 717 ~--~~~~~~~~-~~~~~~~~~~--~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~~~~Aa~~A 791 (2602)
. ..+||++. ..++.+.+.. .+..++|+++++++|++|++.|+++++.++.++|||||+||++.||++|++||++|
T Consensus 119 ~~~~~~~~~v~~~~~~~v~~~~~~~~~~~speei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~A 198 (673)
T PLN03184 119 EESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKVTKAVITVPAYFNDSQRTATKDAGRIA 198 (673)
T ss_pred hhhhcCCeEEEecCCCcEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHC
Confidence 3 36889887 4556666554 36789999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEechhHHHHHHhhhccCcccceEEEEEeCCceEEEEEEEEECCEEEEEEEecCCCCcchHHHHHHHHHHHHHHh
Q psy15216 792 GLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAF 871 (2602)
Q Consensus 792 Gl~~~~li~EPtAAAl~y~~~~~~~~~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~ 871 (2602)
||++++||+||+|||++|+.... .++++||||+||||||+||+++.++.++|+++.||.++||++||++|++|+.++|.
T Consensus 199 Gl~v~~li~EPtAAAlayg~~~~-~~~~vlV~DlGgGT~DvSi~~~~~~~~eVla~~gd~~LGG~dfD~~L~~~~~~~f~ 277 (673)
T PLN03184 199 GLEVLRIINEPTAASLAYGFEKK-SNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFK 277 (673)
T ss_pred CCCeEEEeCcHHHHHHHhhcccC-CCCEEEEEECCCCeEEEEEEEecCCEEEEEEecCCCccCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998754 46789999999999999999999999999999999999999999999999999987
Q ss_pred hcc-----CCHHHHHHHHHHHHHHHHHcccccceEEEEEec-----CCceEEEEeCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15216 872 LKK-----LSYKDVNILMIKSREIKELLSYQSSVKLNVKLS-----DKKIVNITIDMKQFFTITQHLVNRTILLSSKALM 941 (2602)
Q Consensus 872 ~~~-----~~~~~~~~l~~~~e~~K~~LS~~~~~~~~i~~~-----~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~l~ 941 (2602)
.+. .+++.+.+|+.+||++|+.||.+.++.+.++.. ++.+++++|||++||++++++++++..+|+++|+
T Consensus 278 ~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~r~~~~i~~~L~ 357 (673)
T PLN03184 278 KDEGIDLLKDKQALQRLTEAAEKAKIELSSLTQTSISLPFITATADGPKHIDTTLTRAKFEELCSDLLDRCKTPVENALR 357 (673)
T ss_pred hhcCCCcccCHHHHHHHHHHHHHHHHhcCCCCcceEEEEeeeccCCCCceEEEEECHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 543 467889999999999999999999988888732 2367899999999999999999999999999999
Q ss_pred HcCCCccccceEEEecCccchHHHHHHHHhhccCcccCcCCcchHhHHHHHHHhHHhcCCCCCCCceeeeccccccceEe
Q psy15216 942 DANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIE 1021 (2602)
Q Consensus 942 ~a~~~~~~i~~V~LvGG~sr~P~v~~~l~~~f~~~~~~~~~p~~aVa~GAa~~a~~l~~~~~~~~~~~~~dv~~~~~gi~ 1021 (2602)
++++++.+|+.|+||||+||||.||++|+++||..+....||++|||+|||++|+++++.. +++.+.|++|++||++
T Consensus 358 ~a~~~~~dId~ViLvGGssriP~V~~~i~~~fg~~~~~~~npdeaVA~GAAi~aa~ls~~~---~~~~~~dv~p~slgi~ 434 (673)
T PLN03184 358 DAKLSFKDIDEVILVGGSTRIPAVQELVKKLTGKDPNVTVNPDEVVALGAAVQAGVLAGEV---SDIVLLDVTPLSLGLE 434 (673)
T ss_pred HcCCChhHccEEEEECCccccHHHHHHHHHHhCCCcccccCcchHHHHHHHHHHHHhccCc---cceEEEecccccceEE
Confidence 9999999999999999999999999999999998888899999999999999999999853 3688999999999999
Q ss_pred eeccEEEEEEecCCCCCCCcEEEEEeccccccceeeeEeecCccccccCceeeeeEecCCCCCCCCccEEEEEEEECCCe
Q psy15216 1022 TIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADG 1101 (2602)
Q Consensus 1022 ~~~~~~~~ii~~~t~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~i~~~~~g~~~i~v~f~~d~~g 1101 (2602)
+.++.+.+|||||++||+++++.|++..|+|+.+.|.||||++....+|..||+|.|+++||.++|.++|+|+|++|.||
T Consensus 435 ~~~~~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~i~~ge~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~id~~G 514 (673)
T PLN03184 435 TLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANG 514 (673)
T ss_pred ecCCeeEEEEeCCCccceecceEeeeecCCCcEEEEEEEeecccccccCceEEEEEEeCCCCCCCCCceEEEEEEeCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEEecCCceEEEEEecCCCCCHHHHHhhh
Q psy15216 1102 LLSIFAYEKISGKKKFITIKPFYNMNLDEIKNGA 1135 (2602)
Q Consensus 1102 ~l~v~a~~~~~g~~~~~~~~~~~~l~~~~i~~~~ 1135 (2602)
+|+|++.+..||++..+++....+||++|++++.
T Consensus 515 iL~V~a~~~~t~~~~~~~i~~~~~ls~eei~~~~ 548 (673)
T PLN03184 515 ILSVSATDKGTGKKQDITITGASTLPKDEVERMV 548 (673)
T ss_pred eEEEEEEecCCCeEEEEEecccccccHHHHHHHH
Confidence 9999999999999999999887789999999986
|
|
| >KOG0101|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-80 Score=773.75 Aligned_cols=512 Identities=38% Similarity=0.584 Sum_probs=475.5
Q ss_pred CCceEEEEEcCcccEEEEEEECCeeEEEeCCCCCccccEEEEEecCCcEEEcHHHHhhhccCCCCchhhhhhhhCCCCCC
Q psy15216 635 NKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKN 714 (2602)
Q Consensus 635 ~~~~vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~v~~~~~~~~~vG~~A~~~~~~~p~~~~~~~K~~lg~~~~~ 714 (2602)
....+||||||||||||+++.+++++++.|.+|++.+||+|+|.++ +.++|..|+++...+|.++++++||++|+.+++
T Consensus 5 ~~~~aiGIdlGtT~s~v~v~~~~~v~iian~~g~rttPs~vaf~~~-e~~vg~~a~~qv~~np~ntv~~~krliGr~f~d 83 (620)
T KOG0101|consen 5 PESVAIGIDLGTTYSCVGVYQSGKVEIIANDQGNRTTPSVVAFTDT-ERLIGDAAKNQVARNPDNTVFDAKRLIGRFFDD 83 (620)
T ss_pred cccceeeEeccCccceeeeEcCCcceeeeccccCccccceeeeccc-ccchhhhhhhhhhcCCcceeeehhhhcCccccc
Confidence 3457899999999999999999999999999999999999999876 589999999999999999999999999999998
Q ss_pred CCCC----CCCeeee-cCCCceEEEEe----CceeCHHHHHHHHHHHHHHHHHHhhcCccceEEEEEcCCCCHHHHHHHH
Q psy15216 715 INTN----SFPYDFQ-NKFGMLHIKTI----SGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTK 785 (2602)
Q Consensus 715 ~~~~----~~~~~~~-~~~~~~~~~~~----~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~~~ 785 (2602)
.... +|||.+. +.++.+.+... ...++|+++++++|.++++.|+.++|..+.++|+|||+||++.||++++
T Consensus 84 ~~v~~~~k~~pf~V~~~~~~~~~i~~~~~~~~~~f~peeiss~~L~klke~Ae~~Lg~~v~~aviTVPa~F~~~Qr~at~ 163 (620)
T KOG0101|consen 84 PEVQSDMKLWPFKVISDQGGKPKIQVTYKGETKSFNPEEISSMVLTKLKETAEAYLGKTVKKAVVTVPAYFNDSQRAATK 163 (620)
T ss_pred hhhHhHhhcCCcccccccCCcceEEecccccceeeeeeeeeehhccccHHHHHHHhcCceeeEEEEecCCcCHHHHHHHH
Confidence 6433 8999988 34445666543 3578999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCceEEEechhHHHHHHhhhccCc-ccceEEEEEeCCceEEEEEEEEECCEEEEEEEecCCCCcchHHHHHHHH
Q psy15216 786 NAAKLAGLNVLRLLNEPTSAAIAYKLDKNI-FEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFS 864 (2602)
Q Consensus 786 ~Aa~~AGl~~~~li~EPtAAAl~y~~~~~~-~~~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~ 864 (2602)
+|+.+|||+++++|+||+||||+|++.+.. ...+|+|+|+||||||||++.+.++.++|.++.||.++||.+||++|++
T Consensus 164 ~A~~iaGl~vlrii~EPtAaalAygl~k~~~~~~~VlI~DlGggtfdvs~l~i~gG~~~vkat~gd~~lGGedf~~~l~~ 243 (620)
T KOG0101|consen 164 DAALIAGLNVLRIINEPTAAALAYGLDKKVLGERNVLIFDLGGGTFDVSVLSLEGGIFEVKATAGDTHLGGEDFDNKLVN 243 (620)
T ss_pred HHHHhcCCceeeeecchHHHHHHhhccccccceeeEEEEEcCCCceeeeeEEeccchhhhhhhcccccccchhhhHHHHH
Confidence 999999999999999999999999987662 3468999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcc-----CCHHHHHHHHHHHHHHHHHcccccceEEEEE-ecCCceEEEEeCHHHHHHHHHHHHHHHHHHHHH
Q psy15216 865 WIVKNAFLKK-----LSYKDVNILMIKSREIKELLSYQSSVKLNVK-LSDKKIVNITIDMKQFFTITQHLVNRTILLSSK 938 (2602)
Q Consensus 865 ~l~~~~~~~~-----~~~~~~~~l~~~~e~~K~~LS~~~~~~~~i~-~~~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~ 938 (2602)
|+..+|..+. .+.+++.+|+.+||++|+.||+..++++.++ +.+|.++..+|||.+||.++.+++.++.+++++
T Consensus 244 h~~~ef~~k~~~d~~~n~r~l~rLR~a~E~aKr~LS~~~~~~i~vdsL~~g~d~~~~itrarfe~l~~dlf~~~~~~v~~ 323 (620)
T KOG0101|consen 244 HFAAEFKRKAGKDIGGNARALRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRSTLEPVEK 323 (620)
T ss_pred HHHHHHHHhhccccccchHHHHHHHHHHHHHHhhhcccccceeccchhhccccccceeehhhhhhhhhHHHHHHHHHHHH
Confidence 9999998766 5789999999999999999999999999998 899999999999999999999999999999999
Q ss_pred HHHHcCCCccccceEEEecCccchHHHHHHHHhhc-cCcccCcCCcchHhHHHHHHHhHHhcCCCC-CCCceeeeccccc
Q psy15216 939 ALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFF-KTTLLTSIDPDKAVVFGAAIQANFLSGNRG-IDDNFLLLDVIPL 1016 (2602)
Q Consensus 939 ~l~~a~~~~~~i~~V~LvGG~sr~P~v~~~l~~~f-~~~~~~~~~p~~aVa~GAa~~a~~l~~~~~-~~~~~~~~dv~~~ 1016 (2602)
+|+++++++.+|+.|+||||+||+|.+|+.++++| ++.+..+.||||+||+|||+||+.+++... ...++++.|+.|.
T Consensus 324 ~L~da~~dk~~i~~vvlVGGstriPk~~~ll~d~f~~k~~~~sinpDeavA~GAavqaa~~~g~~~~~~~~l~lid~~pl 403 (620)
T KOG0101|consen 324 ALKDAKLDKSDIDEVVLVGGSTRIPKVQKLLEDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSLNIQDLLLIDVAPL 403 (620)
T ss_pred HHHhhccCccCCceeEEecCcccchHHHHHHHHHhcccccccCCCHHHHHHhhHHHHhhhccCCccccccceeeeecccc
Confidence 99999999999999999999999999999999999 567788999999999999999999998653 1267899999999
Q ss_pred cceEeeeccEEEEEEecCCCCCCCcEEEEEeccccccceeeeEeecCccccccCceeeeeEecCCCCCCCCccEEEEEEE
Q psy15216 1017 SLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQ 1096 (2602)
Q Consensus 1017 ~~gi~~~~~~~~~ii~~~t~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~i~~~~~g~~~i~v~f~ 1096 (2602)
++||++.++.|.++|+|||.+|+.++++|+|..|||..+.|.|||||+...++|.++|.|.|+||||.|.|.++|+|+|.
T Consensus 404 ~~gve~a~~~~~~~i~~~t~~P~~k~~~ftt~~dnQp~V~I~VyEger~~~kdn~~lg~feL~gippaprgvp~Ievtfd 483 (620)
T KOG0101|consen 404 SLGVETAGGVFTVLIPRNTSIPTKKTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFD 483 (620)
T ss_pred cccccccCCcceeeeecccccceeeeeeeeeecCCCCceeEEEEeccccccccccccceeeecCCCccccCCcceeEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCeeEEEEEEEecCCceEEEEEecCCC-CCHHHHHhhhhccccCCCchhHHH
Q psy15216 1097 VDADGLLSIFAYEKISGKKKFITIKPFYN-MNLDEIKNGAIFNENSGISLCDAL 1149 (2602)
Q Consensus 1097 ~d~~g~l~v~a~~~~~g~~~~~~~~~~~~-l~~~~i~~~~~~~~~~g~~~~~~~ 1149 (2602)
+|.||+|+|+|.++.|||+.+++|.+..+ ||.++|++|. .+++...--+..
T Consensus 484 iD~ngiL~Vta~d~stgK~~~i~i~n~~grls~~~Ierm~--~ea~~~~~~d~~ 535 (620)
T KOG0101|consen 484 IDANGILNVTAVDKSTGKENKITITNDKGRLSKEEIERMV--QEAEKYKAEDEK 535 (620)
T ss_pred cCCCcEEEEeeccccCCccceEEEecccceeehhhhhhhh--hhhhhccccCHH
Confidence 99999999999999999999999999876 9999999984 555555444433
|
|
| >PRK01433 hscA chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-78 Score=800.45 Aligned_cols=488 Identities=43% Similarity=0.663 Sum_probs=436.0
Q ss_pred hhhcccCCCcccccC-CceEEEEEcCcccEEEEEEECCeeEEEeCCCCCccccEEEEEecCCcEEEcHHHHhhhccCCCC
Q psy15216 621 ALLQISEPDDISVKN-KCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 699 (2602)
Q Consensus 621 ~~l~~~~p~~~~~~~-~~~vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~v~~~~~~~~~vG~~A~~~~~~~p~~ 699 (2602)
.++.+++|++++.++ ..++||||||||||+||++.+|++++|+|..|++.+||+|+|.++ .++||..|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~viGIDlGTT~S~va~~~~~~~~ii~n~~g~~~tPS~V~f~~~-~~~vG~~A---------- 70 (595)
T PRK01433 2 QIIEIREPEQADFKQERQIAVGIDFGTTNSLIAIATNRKVKVIKSIDDKELIPTTIDFTSN-NFTIGNNK---------- 70 (595)
T ss_pred ceEEecCCCCCCccccCceEEEEEcCcccEEEEEEeCCeeEEEECCCCCeecCeEEEEcCC-CEEECchh----------
Confidence 356788888766544 347899999999999999999999999999999999999999765 48999987
Q ss_pred chhhhhhhhCCCCCCCCCCCCCee-----eecCCCceEEEEeCceeCHHHHHHHHHHHHHHHHHHhhcCccceEEEEEcC
Q psy15216 700 TISSIKRFIARDLKNINTNSFPYD-----FQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPA 774 (2602)
Q Consensus 700 ~~~~~K~~lg~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa 774 (2602)
+++++||+||+++.+.......+. +....+...+...+..++|+++++++|++||+.|+.++|.++.++||||||
T Consensus 71 ti~~~KrliG~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~speei~a~iL~~lk~~ae~~lg~~v~~aVITVPa 150 (595)
T PRK01433 71 GLRSIKRLFGKTLKEILNTPALFSLVKDYLDVNSSELKLNFANKQLRIPEIAAEIFIYLKNQAEEQLKTNITKAVITVPA 150 (595)
T ss_pred hHHHHHHHhCCCchhhccchhhHhhhhheeecCCCeeEEEECCEEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECC
Confidence 799999999999876433211111 112233445556677899999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCceEEEechhHHHHHHhhhccCcccceEEEEEeCCceEEEEEEEEECCEEEEEEEecCCCCc
Q psy15216 775 YFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLG 854 (2602)
Q Consensus 775 ~f~~~qr~~~~~Aa~~AGl~~~~li~EPtAAAl~y~~~~~~~~~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lG 854 (2602)
||++.||++|++||++||++++++|+||+|||++|++... .++++||||+||||||+|++++.++.++|+++.||.++|
T Consensus 151 ~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlay~~~~~-~~~~vlV~DlGGGT~DvSi~~~~~~~~~V~at~gd~~lG 229 (595)
T PRK01433 151 HFNDAARGEVMLAAKIAGFEVLRLIAEPTAAAYAYGLNKN-QKGCYLVYDLGGGTFDVSILNIQEGIFQVIATNGDNMLG 229 (595)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecCcHHHHHHHhcccC-CCCEEEEEECCCCcEEEEEEEEeCCeEEEEEEcCCcccC
Confidence 9999999999999999999999999999999999998754 456899999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHcccccceEEEEEecCCceEEEEeCHHHHHHHHHHHHHHHHH
Q psy15216 855 GDDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNRTIL 934 (2602)
Q Consensus 855 G~~~D~~l~~~l~~~~~~~~~~~~~~~~l~~~~e~~K~~LS~~~~~~~~i~~~~~~~~~~~itr~~fe~l~~~~~~~~~~ 934 (2602)
|+|||.+|++|+.++|.... +.. .+..||++|+.||.+..... ..++|||++|+++++|+++++..
T Consensus 230 G~d~D~~l~~~~~~~~~~~~-~~~----~~~~~ekaK~~LS~~~~~~~---------~~~~itr~efe~l~~~l~~~~~~ 295 (595)
T PRK01433 230 GNDIDVVITQYLCNKFDLPN-SID----TLQLAKKAKETLTYKDSFNN---------DNISINKQTLEQLILPLVERTIN 295 (595)
T ss_pred hHHHHHHHHHHHHHhcCCCC-CHH----HHHHHHHHHHhcCCCccccc---------ceEEEcHHHHHHHHHHHHHHHHH
Confidence 99999999999999874332 222 23459999999998765321 27899999999999999999999
Q ss_pred HHHHHHHHcCCCccccceEEEecCccchHHHHHHHHhhccCcccCcCCcchHhHHHHHHHhHHhcCCCCCCCceeeeccc
Q psy15216 935 LSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVI 1014 (2602)
Q Consensus 935 ~i~~~l~~a~~~~~~i~~V~LvGG~sr~P~v~~~l~~~f~~~~~~~~~p~~aVa~GAa~~a~~l~~~~~~~~~~~~~dv~ 1014 (2602)
+++++|++++ +.+|+.|+||||+||||+|+++|+++|+.++..+.||++|||+|||++|+.+++... ++.+.|++
T Consensus 296 ~i~~~L~~a~--~~~Id~ViLvGGssriP~v~~~l~~~f~~~~~~~~npdeaVA~GAAi~a~~l~~~~~---~~~l~Dv~ 370 (595)
T PRK01433 296 IAQECLEQAG--NPNIDGVILVGGATRIPLIKDELYKAFKVDILSDIDPDKAVVWGAALQAENLIAPHT---NSLLIDVV 370 (595)
T ss_pred HHHHHHhhcC--cccCcEEEEECCcccChhHHHHHHHHhCCCceecCCchHHHHHHHHHHHHHhhCCcc---ceEEEEec
Confidence 9999999998 678999999999999999999999999998888999999999999999999987543 67899999
Q ss_pred cccceEeeeccEEEEEEecCCCCCCCcEEEEEeccccccceeeeEeecCccccccCceeeeeEecCCCCCCCCccEEEEE
Q psy15216 1015 PLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVT 1094 (2602)
Q Consensus 1015 ~~~~gi~~~~~~~~~ii~~~t~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~i~~~~~g~~~i~v~ 1094 (2602)
|++||+++.+|.+.+||+||++||+++++.|+|..|+|+.+.|.|||||+..+.+|..||+|.|+|+||.|+|.++|+|+
T Consensus 371 p~slgi~~~~g~~~~ii~rnt~iP~~~~~~f~t~~d~q~~v~i~v~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~i~vt 450 (595)
T PRK01433 371 PLSLGMELYGGIVEKIIMRNTPIPISVVKEFTTYADNQTGIQFHILQGEREMAADCRSLARFELKGLPPMKAGSIRAEVT 450 (595)
T ss_pred ccceEEEecCCEEEEEEECCCcccceeeEEeEeecCCCeEEEEEEEeccccccCCCcEEEEEEEcCCCCCCCCCccEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCeeEEEEEEEecCCceEEEEEecCCCCCHHHHHhhhhccccC
Q psy15216 1095 YQVDADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKNGAIFNENS 1141 (2602)
Q Consensus 1095 f~~d~~g~l~v~a~~~~~g~~~~~~~~~~~~l~~~~i~~~~~~~~~~ 1141 (2602)
|++|.||+|+|+|.+..||++..++|..+.+||++||++++ ++.+
T Consensus 451 f~id~~Gil~V~a~~~~t~~~~~~~i~~~~~ls~~ei~~~~--~~~~ 495 (595)
T PRK01433 451 FAIDADGILSVSAYEKISNTSHAIEVKPNHGIDKTEIDIML--ENAY 495 (595)
T ss_pred EEECCCCcEEEEEEEcCCCcEEEEEecCCCCCCHHHHHHHH--HHHH
Confidence 99999999999999999999999999988789999999986 4444
|
|
| >PRK00290 dnaK molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-77 Score=807.42 Aligned_cols=494 Identities=43% Similarity=0.647 Sum_probs=461.8
Q ss_pred eEEEEEcCcccEEEEEEECCeeEEEeCCCCCccccEEEEEecCCcEEEcHHHHhhhccCCCCchhhhhhhhCCCCCCCCC
Q psy15216 638 VSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNINT 717 (2602)
Q Consensus 638 ~vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~v~~~~~~~~~vG~~A~~~~~~~p~~~~~~~K~~lg~~~~~~~~ 717 (2602)
.+||||||||||+||++++|.+++++|..|++.+||+|+|..++++++|..|+.+..++|.++++++||+||++..+++.
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~~~~~~~ 82 (627)
T PRK00290 3 KIIGIDLGTTNSCVAVMEGGEPKVIENAEGARTTPSVVAFTKDGERLVGQPAKRQAVTNPENTIFSIKRLMGRRDEEVQK 82 (627)
T ss_pred cEEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEeCCCCEEEcHHHHHhhhhCchhhHHHHHHHhCCCchHHHH
Confidence 58999999999999999999999999999999999999998777899999999999999999999999999998433332
Q ss_pred --CCCCeeee-cCCCceEEEEeCceeCHHHHHHHHHHHHHHHHHHhhcCccceEEEEEcCCCCHHHHHHHHHHHHHcCCc
Q psy15216 718 --NSFPYDFQ-NKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLN 794 (2602)
Q Consensus 718 --~~~~~~~~-~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~~~~Aa~~AGl~ 794 (2602)
..+||.+. ..+|...+...+..++|+++++++|++|++.|++++|.++.++|||||++|++.||++|++||++|||+
T Consensus 83 ~~~~~p~~~~~~~~~~~~~~~~~~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~Aa~~AGl~ 162 (627)
T PRK00290 83 DIKLVPYKIVKADNGDAWVEIDGKKYTPQEISAMILQKLKKDAEDYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLE 162 (627)
T ss_pred HhhcCCeEEEEcCCCceEEEECCEEEcHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHHHHHHcCCc
Confidence 37899988 456677777778899999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEechhHHHHHHhhhccCcccceEEEEEeCCceEEEEEEEEECCEEEEEEEecCCCCcchHHHHHHHHHHHHHHhhcc
Q psy15216 795 VLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKK 874 (2602)
Q Consensus 795 ~~~li~EPtAAAl~y~~~~~~~~~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~~ 874 (2602)
+++||+||+|||++|++... .++++||||+||||||+|++++.++.++|+++.|+.++||.+||++|++|+.++|..+.
T Consensus 163 v~~li~EptAAAl~y~~~~~-~~~~vlV~D~GggT~dvsv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~~~~~~~~~~ 241 (627)
T PRK00290 163 VLRIINEPTAAALAYGLDKK-GDEKILVYDLGGGTFDVSILEIGDGVFEVLSTNGDTHLGGDDFDQRIIDYLADEFKKEN 241 (627)
T ss_pred eEEEecchHHHHHHhhhccC-CCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCcChHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999998764 56899999999999999999999999999999999999999999999999999987543
Q ss_pred -----CCHHHHHHHHHHHHHHHHHcccccceEEEEEe-cC----CceEEEEeCHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy15216 875 -----LSYKDVNILMIKSREIKELLSYQSSVKLNVKL-SD----KKIVNITIDMKQFFTITQHLVNRTILLSSKALMDAN 944 (2602)
Q Consensus 875 -----~~~~~~~~l~~~~e~~K~~LS~~~~~~~~i~~-~~----~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~a~ 944 (2602)
.+++.+.+|+.+||++|+.||.+.++.+.++. .. +.++.++|||++|+++++|+++++..+|+++|++++
T Consensus 242 ~~~~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~~fe~l~~~l~~~~~~~i~~~l~~a~ 321 (627)
T PRK00290 242 GIDLRKDKMALQRLKEAAEKAKIELSSAQQTEINLPFITADASGPKHLEIKLTRAKFEELTEDLVERTIEPCKQALKDAG 321 (627)
T ss_pred CCCcccCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeecccCCCCCeEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 46788999999999999999999998888873 21 367899999999999999999999999999999999
Q ss_pred CCccccceEEEecCccchHHHHHHHHhhccCcccCcCCcchHhHHHHHHHhHHhcCCCCCCCceeeeccccccceEeeec
Q psy15216 945 LTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIG 1024 (2602)
Q Consensus 945 ~~~~~i~~V~LvGG~sr~P~v~~~l~~~f~~~~~~~~~p~~aVa~GAa~~a~~l~~~~~~~~~~~~~dv~~~~~gi~~~~ 1024 (2602)
+++.+|+.|+||||+||||+|++.|+++||.++..+.||++|||+|||++|+.+++.. +++.+.|++|++||+++.+
T Consensus 322 ~~~~~id~ViLvGGssriP~v~~~l~~~fg~~~~~~~npdeava~GAa~~aa~l~~~~---~~~~~~d~~~~slgi~~~~ 398 (627)
T PRK00290 322 LSVSDIDEVILVGGSTRMPAVQELVKEFFGKEPNKGVNPDEVVAIGAAIQGGVLAGDV---KDVLLLDVTPLSLGIETLG 398 (627)
T ss_pred CChhhCcEEEEECCcCCChHHHHHHHHHhCCCCCcCcCChHHHHHhHHHHHHHhcCCc---cceeeeeccceEEEEEecC
Confidence 9999999999999999999999999999999899999999999999999999998853 3688999999999999999
Q ss_pred cEEEEEEecCCCCCCCcEEEEEeccccccceeeeEeecCccccccCceeeeeEecCCCCCCCCccEEEEEEEECCCeeEE
Q psy15216 1025 GLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADGLLS 1104 (2602)
Q Consensus 1025 ~~~~~ii~~~t~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~i~~~~~g~~~i~v~f~~d~~g~l~ 1104 (2602)
+.+.+|||||+++|+++++.|++..|+|+.+.|.||||++....+|..||+|.|+++||.++|.++|+|+|++|.||+|+
T Consensus 399 ~~~~~ii~~~t~~P~~~~~~f~~~~d~q~~~~i~v~~ge~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~f~~d~~gil~ 478 (627)
T PRK00290 399 GVMTKLIERNTTIPTKKSQVFSTAADNQPAVTIHVLQGEREMAADNKSLGRFNLTGIPPAPRGVPQIEVTFDIDANGIVH 478 (627)
T ss_pred CeEEEEecCCCcCCccceEEEEecCCCcceEEEEEEEecccccCcCceEEEEEECCCCCCCCCCceEEEEEEECCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999998999999999999999
Q ss_pred EEEEEecCCceEEEEEecCCCCCHHHHHhhh
Q psy15216 1105 IFAYEKISGKKKFITIKPFYNMNLDEIKNGA 1135 (2602)
Q Consensus 1105 v~a~~~~~g~~~~~~~~~~~~l~~~~i~~~~ 1135 (2602)
|++.+..+|++.++++....+||+++|++++
T Consensus 479 v~a~~~~~~~~~~~~i~~~~~ls~e~i~~~~ 509 (627)
T PRK00290 479 VSAKDKGTGKEQSITITASSGLSDEEIERMV 509 (627)
T ss_pred EEEEEccCCceeEEEeccccccCHHHHHHHH
Confidence 9999999999999999888789999999986
|
|
| >PTZ00009 heat shock 70 kDa protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-77 Score=801.75 Aligned_cols=498 Identities=38% Similarity=0.591 Sum_probs=457.6
Q ss_pred ceEEEEEcCcccEEEEEEECCeeEEEeCCCCCccccEEEEEecCCcEEEcHHHHhhhccCCCCchhhhhhhhCCCCCCCC
Q psy15216 637 CVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNIN 716 (2602)
Q Consensus 637 ~~vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~v~~~~~~~~~vG~~A~~~~~~~p~~~~~~~K~~lg~~~~~~~ 716 (2602)
..+||||||||||+||++++|++++++|..|++.+||+|+|.++ ++++|..|+.+..++|.++++++||+||+++++..
T Consensus 4 ~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~-~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~ 82 (653)
T PTZ00009 4 GPAIGIDLGTTYSCVGVWKNENVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVARNPENTVFDAKRLIGRKFDDSV 82 (653)
T ss_pred ccEEEEEeCcccEEEEEEeCCceEEEECCCCCccCCcEEEECCC-CEEEcHHHHHhhhhCcccEEhhhHHHhCCCCCchh
Confidence 46799999999999999999999999999999999999999755 58999999999999999999999999999987742
Q ss_pred C----CCCCeeee-cCCCceEEEE--e--CceeCHHHHHHHHHHHHHHHHHHhhcCccceEEEEEcCCCCHHHHHHHHHH
Q psy15216 717 T----NSFPYDFQ-NKFGMLHIKT--I--SGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNA 787 (2602)
Q Consensus 717 ~----~~~~~~~~-~~~~~~~~~~--~--~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~~~~A 787 (2602)
. ..|||.+. ..++...+.. . ...++|++|++++|++|++.|++++|.++.++|||||+||++.||+++++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~A 162 (653)
T PTZ00009 83 VQSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEEISSMVLQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKDA 162 (653)
T ss_pred HhhhhhcCceEEEEcCCCceEEEEEeCCceEEECHHHHHHHHHHHHHHHHHHHhCCCcceeEEEeCCCCCHHHHHHHHHH
Confidence 2 26888876 3445444433 2 357999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceEEEechhHHHHHHhhhccCc-ccceEEEEEeCCceEEEEEEEEECCEEEEEEEecCCCCcchHHHHHHHHHH
Q psy15216 788 AKLAGLNVLRLLNEPTSAAIAYKLDKNI-FEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWI 866 (2602)
Q Consensus 788 a~~AGl~~~~li~EPtAAAl~y~~~~~~-~~~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l 866 (2602)
|++|||++++||+||+|||++|++.... .++++||||+||||||+||+++.++.++|+++.||.++||.+||.+|++|+
T Consensus 163 a~~AGl~v~~li~EptAAAl~y~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~a~~gd~~lGG~d~D~~l~~~~ 242 (653)
T PTZ00009 163 GTIAGLNVLRIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLVEFC 242 (653)
T ss_pred HHHcCCceeEEecchHHHHHHHhhhccCCCCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCCChHHHHHHHHHHH
Confidence 9999999999999999999999986542 357899999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcc------CCHHHHHHHHHHHHHHHHHcccccceEEEEE-ecCCceEEEEeCHHHHHHHHHHHHHHHHHHHHHH
Q psy15216 867 VKNAFLKK------LSYKDVNILMIKSREIKELLSYQSSVKLNVK-LSDKKIVNITIDMKQFFTITQHLVNRTILLSSKA 939 (2602)
Q Consensus 867 ~~~~~~~~------~~~~~~~~l~~~~e~~K~~LS~~~~~~~~i~-~~~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~ 939 (2602)
.++|..+. .+++.+.+|+.+||++|+.||.+.++.+.++ +.++.+++++|||++||++++|+++++..+|+++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~L~~~aEkaK~~LS~~~~~~i~i~~~~~~~d~~~~itR~~fe~l~~~l~~~~~~~i~~~ 322 (653)
T PTZ00009 243 VQDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSSTQATIEIDSLFEGIDYNVTISRARFEELCGDYFRNTLQPVEKV 322 (653)
T ss_pred HHHHHHhccCCCCccCHHHHHHHHHHHHHHHHhCCCCceEEEEEEeccCCceEEEEECHHHHHHHHHHHHHHHHHHHHHH
Confidence 99986543 3578899999999999999999999999997 6778899999999999999999999999999999
Q ss_pred HHHcCCCccccceEEEecCccchHHHHHHHHhhcc-CcccCcCCcchHhHHHHHHHhHHhcCCCC-CCCceeeecccccc
Q psy15216 940 LMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFK-TTLLTSIDPDKAVVFGAAIQANFLSGNRG-IDDNFLLLDVIPLS 1017 (2602)
Q Consensus 940 l~~a~~~~~~i~~V~LvGG~sr~P~v~~~l~~~f~-~~~~~~~~p~~aVa~GAa~~a~~l~~~~~-~~~~~~~~dv~~~~ 1017 (2602)
|+++++++.+|+.|+||||+||||+||++|+++|+ .++....||++|||+|||++|+++++... ...++.+.|++|++
T Consensus 323 L~~a~~~~~~i~~ViLvGGssriP~v~~~i~~~f~~~~~~~~~npdeaVA~GAa~~aa~ls~~~~~~~~~~~~~dv~p~s 402 (653)
T PTZ00009 323 LKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFNGKEPCKSINPDEAVAYGAAVQAAILTGEQSSQVQDLLLLDVTPLS 402 (653)
T ss_pred HHHcCCCHHHCcEEEEECCCCCChhHHHHHHHHhCCCCCCCCCCcchHHhhhhhhhHHHhcCCccccccceEEEeecccc
Confidence 99999999999999999999999999999999996 57788999999999999999999987521 13468899999999
Q ss_pred ceEeeeccEEEEEEecCCCCCCCcEEEEEeccccccceeeeEeecCccccccCceeeeeEecCCCCCCCCccEEEEEEEE
Q psy15216 1018 LGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQV 1097 (2602)
Q Consensus 1018 ~gi~~~~~~~~~ii~~~t~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~i~~~~~g~~~i~v~f~~ 1097 (2602)
||++..++.+.+||+||++||+++++.|++..|+|+.+.|.||||++...++|..||+|.|+++|+.++|.++|+|+|++
T Consensus 403 lgi~~~~~~~~~ii~~~t~iP~~~~~~f~t~~d~q~~~~i~i~ege~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~i 482 (653)
T PTZ00009 403 LGLETAGGVMTKLIERNTTIPTKKSQIFTTYADNQPGVLIQVFEGERAMTKDNNLLGKFHLDGIPPAPRGVPQIEVTFDI 482 (653)
T ss_pred cCccccCCceEEEEeCCCcCCccceeEeEeecCCCceEEEEEEecccccCCCCceEEEEEEcCCCCCCCCCceEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999899999999
Q ss_pred CCCeeEEEEEEEecCCceEEEEEecC-CCCCHHHHHhhh
Q psy15216 1098 DADGLLSIFAYEKISGKKKFITIKPF-YNMNLDEIKNGA 1135 (2602)
Q Consensus 1098 d~~g~l~v~a~~~~~g~~~~~~~~~~-~~l~~~~i~~~~ 1135 (2602)
|.||+|+|++.+..||++..+++... ..|++++++++.
T Consensus 483 d~~Gil~v~~~~~~t~~~~~~~i~~~~~~ls~~~i~~~~ 521 (653)
T PTZ00009 483 DANGILNVSAEDKSTGKSNKITITNDKGRLSKADIDRMV 521 (653)
T ss_pred CCCCeEEEEEecccCCceeeEEEeeccccccHHHHHHHH
Confidence 99999999999999999999988755 459999999986
|
|
| >TIGR01991 HscA Fe-S protein assembly chaperone HscA | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-77 Score=795.27 Aligned_cols=493 Identities=54% Similarity=0.841 Sum_probs=457.6
Q ss_pred EEEEEcCcccEEEEEEECCeEEEEeCCCCCccccEEEEEecCCcEEecHHHHhhhccCCCCchhhhhhhcCCCCCCCC-C
Q psy15216 2035 SIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNIN-T 2113 (2602)
Q Consensus 2035 vvGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~~~~~~vG~~A~~~~~~~p~~~~~~~K~~lg~~~~~~~-~ 2113 (2602)
+||||||||||+||++++|++++++|..|++.+||+|+|.++++++||..|+.+...+|.++++++||+||+++.++. .
T Consensus 1 ~iGIDlGTtns~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~Kr~iG~~~~d~~~~ 80 (599)
T TIGR01991 1 AVGIDLGTTNSLVASVRSGVPEVLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDPKNTISSVKRLMGRSIEDIKTF 80 (599)
T ss_pred CEEEEEccccEEEEEEECCEEEEEECCCCCcccCeEEEEeCCCCEEecHHHHHhhhhChhhhHHHHHHHhCCCccchhhc
Confidence 589999999999999999999999999999999999999877789999999999999999999999999999876543 3
Q ss_pred CCCCeeee-cCCCceEEEecCceeCHHHHHHHHHHHHHHHHHHhhccccceEEEeeCCCCCHHHHHHHHHHHHHcCCcee
Q psy15216 2114 NSFPYDFQ-NKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVL 2192 (2602)
Q Consensus 2114 ~~~~~~~~-~~~g~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~l~~Aa~~AGl~~~ 2192 (2602)
..+||.+. ..++.+.+....+.++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++||+.||++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~p~ei~a~iL~~lk~~a~~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa~~AGl~v~ 160 (599)
T TIGR01991 81 SILPYRFVDGPGEMVRLRTVQGTVTPVEVSAEILKKLKQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAARLAGLNVL 160 (599)
T ss_pred ccCCEEEEEcCCCceEEEeCCCEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHHHcCCCce
Confidence 45788874 34567777766778999999999999999999999999999999999999999999999999999999999
Q ss_pred EeechhHHHHHHhhhccCCCCceEEEEEeCCceEEEEEEEEeCCEEEEEEEecCCCCchhHHHHHHHHHHHHHHhhh-cC
Q psy15216 2193 RLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLK-KL 2271 (2602)
Q Consensus 2193 ~li~EP~AAAl~y~~~~~~~~~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~-~~ 2271 (2602)
++|+||+|||++|++... .++++||||+||||||+||+++.++.++|+++.|+.++||++||++|++|+.+++... ..
T Consensus 161 ~li~EPtAAAlay~~~~~-~~~~vlV~DlGgGT~DvSi~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~l~~~~~~~~~~ 239 (599)
T TIGR01991 161 RLLNEPTAAAVAYGLDKA-SEGIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHALAKWILKQLGISADL 239 (599)
T ss_pred EEecCHHHHHHHHhhccC-CCCEEEEEEcCCCeEEEEEEEEcCCeEEEEEEcCCCCCCHHHHHHHHHHHHHHhhCCCCCC
Confidence 999999999999987754 4678999999999999999999999999999999999999999999999999774322 23
Q ss_pred ChhHHHHHHHHHHHHHHHhcccceEEEEEEecCCceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccceEEE
Q psy15216 2272 SYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVIL 2351 (2602)
Q Consensus 2272 ~~~~~~~l~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~L 2351 (2602)
......+|+.+||++|+.||...++.+.+++ ++.++.++|||++|+++++|+++++.+++.++|+++++++.+|+.|+|
T Consensus 240 ~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~-~g~~~~~~itr~efe~l~~~ll~~i~~~i~~~L~~a~~~~~~id~ViL 318 (599)
T TIGR01991 240 NPEDQRLLLQAARAAKEALTDAESVEVDFTL-DGKDFKGKLTRDEFEALIQPLVQKTLSICRRALRDAGLSVEEIKGVVL 318 (599)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCceEEEEEEE-CCcEEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCCEEEE
Confidence 4556778999999999999999999888886 567899999999999999999999999999999999999999999999
Q ss_pred EeCccchHHHHHHHHhhcCCcccCCCCccchhhhHHHHHhHHhcCCCCCCCceeeeccccccceEEeeccEEEEEEecCC
Q psy15216 2352 VGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNT 2431 (2602)
Q Consensus 2352 vGG~s~~p~v~~~l~~~f~~~~~~~~~p~~aVa~GAa~~a~~~~~~~~~~~~~~~~d~~~~~~gi~~~~~~~~~ii~k~t 2431 (2602)
|||+||||+|+++|++.|+..+..+.||++|||+|||++|+.+++.... .++.+.|++|++||+++.+|.+.++|+||+
T Consensus 319 vGGssriP~V~~~l~~~f~~~~~~~~npdeaVA~GAai~a~~l~~~~~~-~~~~l~dv~p~slgi~~~~g~~~~ii~rnt 397 (599)
T TIGR01991 319 VGGSTRMPLVRRAVAELFGQEPLTDIDPDQVVALGAAIQADLLAGNRIG-NDLLLLDVTPLSLGIETMGGLVEKIIPRNT 397 (599)
T ss_pred ECCcCCChHHHHHHHHHhCCCCCCCCCCcHHHHHHHHHHHHHhcccccc-CceEEEEeeeeeeEEEecCCEEEEEEeCCC
Confidence 9999999999999999999888899999999999999999999876533 358899999999999999999999999999
Q ss_pred cCCCCcEEEEEeecccccceeEEEeecCcccccCCceeEEEEeeCCCCCCCCccEEEEEEEEcCCccEEEEEEeecCCcE
Q psy15216 2432 TIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYEKISGKK 2511 (2602)
Q Consensus 2432 ~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~f~id~~g~l~V~a~~~~tg~~ 2511 (2602)
+||+++++.|++..|+|+.+.|.||||++..+.+|..||+|.|+++||.|+|.++|+|+|+||.||+|+|++.++.||++
T Consensus 398 ~iP~~~~~~~~t~~d~q~~v~i~i~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~gil~V~a~~~~t~~~ 477 (599)
T TIGR01991 398 PIPVARAQEFTTYKDGQTAMVIHVVQGERELVEDCRSLARFELRGIPPMVAGAARIRVTFQVDADGLLTVSAQEQSTGVE 477 (599)
T ss_pred cCCccceEEEEEccCCCeEEEEEEEeecccccccCceEEEEEEcCCCCCCCCCCcEEEEEEECCCCeEEEEEEECCCCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCCChHHHhcc
Q psy15216 2512 KFITIKPFYNMNLDEIKNG 2530 (2602)
Q Consensus 2512 ~~~~i~~~~~l~~~ei~~~ 2530 (2602)
..+.+....+|+++||++.
T Consensus 478 ~~~~i~~~~~l~~~~i~~~ 496 (599)
T TIGR01991 478 QSIQVKPSYGLSDEEIERM 496 (599)
T ss_pred EEEecccccCCCHHHHHHH
Confidence 9999988888999999863
|
The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK. |
| >TIGR02350 prok_dnaK chaperone protein DnaK | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-77 Score=804.19 Aligned_cols=495 Identities=43% Similarity=0.647 Sum_probs=464.4
Q ss_pred eEEEEEcCcccEEEEEEECCeeEEEeCCCCCccccEEEEEecCCcEEEcHHHHhhhccCCCCchhhhhhhhCCCCCCCCC
Q psy15216 638 VSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNINT 717 (2602)
Q Consensus 638 ~vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~v~~~~~~~~~vG~~A~~~~~~~p~~~~~~~K~~lg~~~~~~~~ 717 (2602)
.+||||||||||+||++++|++++++|..|++.+||+|+|.+++++++|..|+.+...+|.++++++||+||+++.+++.
T Consensus 1 ~viGIDlGtt~s~va~~~~g~~~ii~n~~~~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~~~~~~~ 80 (595)
T TIGR02350 1 KIIGIDLGTTNSCVAVMEGGEPVVIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNPENTIYSIKRFMGRRFDEVTE 80 (595)
T ss_pred CEEEEEeCcccEEEEEEECCEEEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhhhhCchhhhHHHHHHhCCCchHHHH
Confidence 37999999999999999999999999999999999999998777899999999999999999999999999998855432
Q ss_pred --CCCCeeeecCCCceEEEEeCceeCHHHHHHHHHHHHHHHHHHhhcCccceEEEEEcCCCCHHHHHHHHHHHHHcCCce
Q psy15216 718 --NSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNV 795 (2602)
Q Consensus 718 --~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~~~~Aa~~AGl~~ 795 (2602)
..+||.+...++...+...+..++|+++++++|++|++.|+.++|.++.++|||||++|++.||++|++||++|||++
T Consensus 81 ~~~~~~~~v~~~~~~~~~~v~~~~~~peel~a~~L~~l~~~a~~~~~~~v~~~VItVPa~f~~~qR~a~~~Aa~~AGl~v 160 (595)
T TIGR02350 81 EAKRVPYKVVGDGGDVRVKVDGKEYTPQEISAMILQKLKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEV 160 (595)
T ss_pred HhhcCCeeEEcCCCceEEEECCEEecHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHcCCce
Confidence 378898777788888888888999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEechhHHHHHHhhhccCcccceEEEEEeCCceEEEEEEEEECCEEEEEEEecCCCCcchHHHHHHHHHHHHHHhhcc-
Q psy15216 796 LRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKK- 874 (2602)
Q Consensus 796 ~~li~EPtAAAl~y~~~~~~~~~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~~- 874 (2602)
++||+||+|||++|+......++++||||+||||||+|++++.++.++|+++.|+.++||.+||+.|++|+.++|..+.
T Consensus 161 ~~li~EptAAAl~y~~~~~~~~~~vlV~D~Gggt~dvsv~~~~~~~~~v~~~~gd~~lGG~d~D~~l~~~~~~~~~~~~~ 240 (595)
T TIGR02350 161 LRIINEPTAAALAYGLDKSKKDEKILVFDLGGGTFDVSILEIGDGVFEVLSTAGDTHLGGDDFDQRIIDWLADEFKKEEG 240 (595)
T ss_pred EEEecchHHHHHHHhhcccCCCcEEEEEECCCCeEEEEEEEecCCeEEEEEecCCcccCchhHHHHHHHHHHHHHHHhhC
Confidence 9999999999999998764567899999999999999999999999999999999999999999999999999886543
Q ss_pred ----CCHHHHHHHHHHHHHHHHHcccccceEEEEEe-c----CCceEEEEeCHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q psy15216 875 ----LSYKDVNILMIKSREIKELLSYQSSVKLNVKL-S----DKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANL 945 (2602)
Q Consensus 875 ----~~~~~~~~l~~~~e~~K~~LS~~~~~~~~i~~-~----~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~a~~ 945 (2602)
.+++.+.+|+.+||++|+.||.+.++.+.++. . ++.+++++|||++|+++++|+++++..+++++|+++++
T Consensus 241 ~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~l~~~~~~~i~~~l~~a~~ 320 (595)
T TIGR02350 241 IDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFITADASGPKHLEMTLTRAKFEELTADLVERTKEPVRQALKDAGL 320 (595)
T ss_pred CCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEeeecccCCCCCeeEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 46788999999999999999999988888873 2 23578999999999999999999999999999999999
Q ss_pred CccccceEEEecCccchHHHHHHHHhhccCcccCcCCcchHhHHHHHHHhHHhcCCCCCCCceeeeccccccceEeeecc
Q psy15216 946 TIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGG 1025 (2602)
Q Consensus 946 ~~~~i~~V~LvGG~sr~P~v~~~l~~~f~~~~~~~~~p~~aVa~GAa~~a~~l~~~~~~~~~~~~~dv~~~~~gi~~~~~ 1025 (2602)
++.+|+.|+||||+||||+|++.|+++||.++..+.||++|||+|||++|+.+++.. +++.+.|++|++||+++.++
T Consensus 321 ~~~~i~~V~LvGGssriP~v~~~i~~~f~~~~~~~~~pdeava~GAa~~aa~l~~~~---~~~~~~d~~~~~igi~~~~~ 397 (595)
T TIGR02350 321 SASDIDEVILVGGSTRIPAVQELVKDFFGKEPNKSVNPDEVVAIGAAIQGGVLKGDV---KDVLLLDVTPLSLGIETLGG 397 (595)
T ss_pred CHhHCcEEEEECCcccChHHHHHHHHHhCCcccCCcCcHHHHHHHHHHHHHHhcCCc---ccceeeecccceeEEEecCC
Confidence 999999999999999999999999999998888999999999999999999998763 46889999999999999999
Q ss_pred EEEEEEecCCCCCCCcEEEEEeccccccceeeeEeecCccccccCceeeeeEecCCCCCCCCccEEEEEEEECCCeeEEE
Q psy15216 1026 LVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADGLLSI 1105 (2602)
Q Consensus 1026 ~~~~ii~~~t~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~i~~~~~g~~~i~v~f~~d~~g~l~v 1105 (2602)
.+.+||+||++||+++++.|++..|+|+.+.|.||||++..+.+|..||+|.|+++||.++|.++|+|+|++|.||+|+|
T Consensus 398 ~~~~ii~~~~~iP~~~~~~~~~~~d~q~~v~i~i~~ge~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~f~~d~~G~l~v 477 (595)
T TIGR02350 398 VMTKLIERNTTIPTKKSQVFSTAADNQPAVDIHVLQGERPMAADNKSLGRFELTGIPPAPRGVPQIEVTFDIDANGILHV 477 (595)
T ss_pred ceEEEEeCCCcCCccceEeeeccCCCCcEEEEEEEeecccccccCcEeEEEEECCCCCCCCCCceEEEEEEEcCCCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCceEEEEEecCCCCCHHHHHhhh
Q psy15216 1106 FAYEKISGKKKFITIKPFYNMNLDEIKNGA 1135 (2602)
Q Consensus 1106 ~a~~~~~g~~~~~~~~~~~~l~~~~i~~~~ 1135 (2602)
++.+..+|++..+++....+||++++++++
T Consensus 478 ~~~~~~~~~~~~~~i~~~~~ls~~~~~~~~ 507 (595)
T TIGR02350 478 SAKDKGTGKEQSITITASSGLSEEEIERMV 507 (595)
T ss_pred EEEEccCCceEEEEeccccccCHHHHHHHH
Confidence 999999999999999888889999999986
|
Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved. |
| >PRK13410 molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-76 Score=793.41 Aligned_cols=492 Identities=39% Similarity=0.647 Sum_probs=452.8
Q ss_pred eEEEEEcCcccEEEEEEECCeEEEEeCCCCCccccEEEEEecCCcEEecHHHHhhhccCCCCchhhhhhhcCCCCCCCC-
Q psy15216 2034 VSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNIN- 2112 (2602)
Q Consensus 2034 ~vvGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~~~~~~vG~~A~~~~~~~p~~~~~~~K~~lg~~~~~~~- 2112 (2602)
.+||||||||||+||++++|+|.+|.|..|++.+||+|+|.+++++++|..|+.+...+|.++++++||+||+++.+..
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KRliG~~~~~~~~ 82 (668)
T PRK13410 3 RIVGIDLGTTNSVVAVMEGGKPVVIANAEGMRTTPSVVGFTKDGELLVGQLARRQLVLNPQNTFYNLKRFIGRRYDELDP 82 (668)
T ss_pred cEEEEEeCCCcEEEEEEECCeEEEEECCCCCccCceEEEEeCCCCEEECHHHHHhhHhCccceehHHhhhhCCCchhhHH
Confidence 5899999999999999999999999999999999999999877889999999999999999999999999999875532
Q ss_pred -CCCCCeeee-cCCCceEEEe--cCceeCHHHHHHHHHHHHHHHHHHhhccccceEEEeeCCCCCHHHHHHHHHHHHHcC
Q psy15216 2113 -TNSFPYDFQ-NKFGMLHIKT--ISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAG 2188 (2602)
Q Consensus 2113 -~~~~~~~~~-~~~g~~~~~~--~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~l~~Aa~~AG 2188 (2602)
...+||.+. ...|.+.+.. .+..++|+++++++|++|++.|+.++|.++.++|||||++|++.||++|++||++||
T Consensus 83 ~~~~~~~~v~~~~~g~~~i~~~~~~~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~AG 162 (668)
T PRK13410 83 ESKRVPYTIRRNEQGNVRIKCPRLEREFAPEELSAMILRKLADDASRYLGEPVTGAVITVPAYFNDSQRQATRDAGRIAG 162 (668)
T ss_pred hhccCCeEEEECCCCcEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHHHcC
Confidence 356788874 3456565543 346799999999999999999999999999999999999999999999999999999
Q ss_pred CceeEeechhHHHHHHhhhccCCCCceEEEEEeCCceEEEEEEEEeCCEEEEEEEecCCCCchhHHHHHHHHHHHHHHhh
Q psy15216 2189 LNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFL 2268 (2602)
Q Consensus 2189 l~~~~li~EP~AAAl~y~~~~~~~~~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~ 2268 (2602)
|+++++|+||+|||++|+.... .++++||||+||||||+||+++.++.++|+++.|+.++||.+||.+|++|+.+++ .
T Consensus 163 l~v~~li~EPtAAAlayg~~~~-~~~~vlV~DlGgGT~Dvsv~~~~~g~~~V~at~gd~~lGG~dfD~~l~~~l~~~f-~ 240 (668)
T PRK13410 163 LEVERILNEPTAAALAYGLDRS-SSQTVLVFDLGGGTFDVSLLEVGNGVFEVKATSGDTQLGGNDFDKRIVDWLAEQF-L 240 (668)
T ss_pred CCeEEEecchHHHHHHhccccC-CCCEEEEEECCCCeEEEEEEEEcCCeEEEEEeecCCCCChhHHHHHHHHHHHHHH-H
Confidence 9999999999999999988654 4678999999999999999999999999999999999999999999999999874 3
Q ss_pred hcC------ChhHHHHHHHHHHHHHHHhcccceEEEEEEec-----CCceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15216 2269 KKL------SYKDVNILMIKSREIKELLSYQSSVKLNVKLS-----DKKIVNITIDMKQFFTITQHLVNRTILLSSKALM 2337 (2602)
Q Consensus 2269 ~~~------~~~~~~~l~~~~e~~K~~ls~~~~~~~~i~~~-----~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~l~ 2337 (2602)
++. ..+.+.+|+.+||++|+.||...++.+.++.. +..++.++|||++||++++++++++..+++++|+
T Consensus 241 ~~~~~d~~~~~~a~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~FE~l~~~l~~r~~~~i~~~L~ 320 (668)
T PRK13410 241 EKEGIDLRRDRQALQRLTEAAEKAKIELSGVSVTDISLPFITATEDGPKHIETRLDRKQFESLCGDLLDRLLRPVKRALK 320 (668)
T ss_pred hhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeecCCCCCeeEEEEECHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322 23566789999999999999999888888732 1246889999999999999999999999999999
Q ss_pred HcCCCccccceEEEEeCccchHHHHHHHHhhcCCcccCCCCccchhhhHHHHHhHHhcCCCCCCCceeeeccccccceEE
Q psy15216 2338 DANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIE 2417 (2602)
Q Consensus 2338 ~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~aVa~GAa~~a~~~~~~~~~~~~~~~~d~~~~~~gi~ 2417 (2602)
++++.+.+|+.|+||||+||||+|+++|+++||.++....||++|||+|||++|+++++.. .++.+.|++|++||++
T Consensus 321 ~ag~~~~dId~VvLVGGssRiP~V~~~l~~~fg~~~~~~~npdeaVA~GAAi~aa~ls~~~---~~~~l~Dv~p~slgie 397 (668)
T PRK13410 321 DAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLIPREPNQNVNPDEVVAVGAAIQAGILAGEL---KDLLLLDVTPLSLGLE 397 (668)
T ss_pred HcCCChhhCcEEEEECCccccHHHHHHHHHHcCCCcccCCCCchHHHHhHHHHHHhhcccc---cceeEEeeccccccce
Confidence 9999999999999999999999999999999999889999999999999999999998742 3588999999999999
Q ss_pred eeccEEEEEEecCCcCCCCcEEEEEeecccccceeEEEeecCcccccCCceeEEEEeeCCCCCCCCccEEEEEEEEcCCc
Q psy15216 2418 TIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADG 2497 (2602)
Q Consensus 2418 ~~~~~~~~ii~k~t~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~f~id~~g 2497 (2602)
+.+|.+.+||+||++||++++..|++..|||+.+.|.||||++....+|..||+|.|+++||.|+|.++|+|+|++|.||
T Consensus 398 ~~~g~~~~li~rnt~iP~~~~~~f~t~~dnq~~v~i~v~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~I~v~f~id~nG 477 (668)
T PRK13410 398 TIGGVMKKLIPRNTTIPVRRSDVFSTSENNQSSVEIHVWQGEREMASDNKSLGRFKLSGIPPAPRGVPQVQVAFDIDANG 477 (668)
T ss_pred ecCCeeEEEEeCCCcccccccccceeccCCCcEEEEEEEeeccccccCCceEEEEEEeCCCCCCCCCCeEEEEEEECCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEeecCCcEEEEEEecCCCCChHHHhcc
Q psy15216 2498 LLSIFAYEKISGKKKFITIKPFYNMNLDEIKNG 2530 (2602)
Q Consensus 2498 ~l~V~a~~~~tg~~~~~~i~~~~~l~~~ei~~~ 2530 (2602)
+|+|++.++.||++..++|....+||++||++.
T Consensus 478 iL~V~a~d~~tg~~~~~~i~~~~~ls~~ei~~~ 510 (668)
T PRK13410 478 ILQVSATDRTTGREQSVTIQGASTLSEQEVNRM 510 (668)
T ss_pred EEEEEEEEcCCCceeeeeecccccCCHHHHHHH
Confidence 999999999999999999988888999999964
|
|
| >PRK05183 hscA chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-76 Score=792.81 Aligned_cols=505 Identities=57% Similarity=0.850 Sum_probs=459.6
Q ss_pred hcccCCCCcccc-cCcceEEEEEcCcccEEEEEEECCeEEEEeCCCCCccccEEEEEecCCcEEecHHHHhhhccCCCCc
Q psy15216 2018 LLQISEPDDISV-KNKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNT 2096 (2602)
Q Consensus 2018 ~~~~~~p~~~~~-~~~~~vvGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~~~~~~vG~~A~~~~~~~p~~~ 2096 (2602)
+..+++|.+++. -...++||||||||||+||++.+|++++++|..|++.+||+|+|.+++ ++||..|+.+...+|.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~~-~~vG~~A~~~~~~~p~~t 81 (616)
T PRK05183 3 LLQISEPGQSAAPHQRRLAVGIDLGTTNSLVATVRSGQAEVLPDEQGRVLLPSVVRYLEDG-IEVGYEARANAAQDPKNT 81 (616)
T ss_pred eEEecCCCCCCCcccCCeEEEEEeccccEEEEEEECCEEEEEEcCCCCeecCeEEEEcCCC-EEEcHHHHHhhHhCchhh
Confidence 345567766543 355689999999999999999999999999999999999999997664 899999999999999999
Q ss_pred hhhhhhhcCCCCCCCC--CCCCCeeeec-CCCceEEEecCceeCHHHHHHHHHHHHHHHHHHhhccccceEEEeeCCCCC
Q psy15216 2097 ISSIKRFIARDLKNIN--TNSFPYDFQN-KFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFN 2173 (2602)
Q Consensus 2097 ~~~~K~~lg~~~~~~~--~~~~~~~~~~-~~g~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~ 2173 (2602)
++++||+||+++.+.. ...+||.+.. .+|.+.+....+.++|+++++++|++|++.++.++|.++.++|||||++|+
T Consensus 82 i~~~KrliG~~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~ei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~ 161 (616)
T PRK05183 82 ISSVKRFMGRSLADIQQRYPHLPYQFVASENGMPLIRTAQGLKSPVEVSAEILKALRQRAEETLGGELDGAVITVPAYFD 161 (616)
T ss_pred HHHHHHHhCCCchhhhhhhhcCCeEEEecCCCceEEEecCCeEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCC
Confidence 9999999999876643 2457887753 467777776667899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCceeEeechhHHHHHHhhhccCCCCceEEEEEeCCceEEEEEEEEeCCEEEEEEEecCCCCchhH
Q psy15216 2174 DIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDD 2253 (2602)
Q Consensus 2174 ~~qr~~l~~Aa~~AGl~~~~li~EP~AAAl~y~~~~~~~~~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~ 2253 (2602)
+.||+++++||+.||+++++||+||+|||++|++... .+++++|||+||||||+||+++.++.++|+++.||.++||.+
T Consensus 162 ~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlay~~~~~-~~~~vlV~DlGGGT~DvSv~~~~~~~~evlat~gd~~lGG~d 240 (616)
T PRK05183 162 DAQRQATKDAARLAGLNVLRLLNEPTAAAIAYGLDSG-QEGVIAVYDLGGGTFDISILRLSKGVFEVLATGGDSALGGDD 240 (616)
T ss_pred HHHHHHHHHHHHHcCCCeEEEecchHHHHHHhhcccC-CCCEEEEEECCCCeEEEEEEEeeCCEEEEEEecCCCCcCHHH
Confidence 9999999999999999999999999999999987654 367899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhc-CChhHHHHHHHHHHHHHHHhcccceEEEEEEecCCceEEEEcCHHHHHHHHHHHHHHHHHHH
Q psy15216 2254 FDYCLFSWIVKNAFLKK-LSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNRTILLS 2332 (2602)
Q Consensus 2254 ~D~~l~~~l~~~~~~~~-~~~~~~~~l~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~itr~~fe~l~~~~~~~~~~~i 2332 (2602)
||.+|++|+.+++.... .......+|+.+||++|+.||...++.+.+....+ .|||++|+++++|+++++.+++
T Consensus 241 ~D~~l~~~~~~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~~~-----~itr~efe~l~~~l~~~~~~~i 315 (616)
T PRK05183 241 FDHLLADWILEQAGLSPRLDPEDQRLLLDAARAAKEALSDADSVEVSVALWQG-----EITREQFNALIAPLVKRTLLAC 315 (616)
T ss_pred HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHHHHhcCCCceEEEEEecCCC-----eEcHHHHHHHHHHHHHHHHHHH
Confidence 99999999998742221 34456778999999999999999988887753332 4999999999999999999999
Q ss_pred HHHHHHcCCCccccceEEEEeCccchHHHHHHHHhhcCCcccCCCCccchhhhHHHHHhHHhcCCCCCCCceeeeccccc
Q psy15216 2333 SKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPL 2412 (2602)
Q Consensus 2333 ~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~aVa~GAa~~a~~~~~~~~~~~~~~~~d~~~~ 2412 (2602)
.++|+++++.+.+|+.|+||||+||||+|++.|+++||..+..+.||++|||+|||++|+.+++.... .++.+.|++|+
T Consensus 316 ~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~npdeaVA~GAAi~a~~l~~~~~~-~~~~l~dv~p~ 394 (616)
T PRK05183 316 RRALRDAGVEADEVKEVVMVGGSTRVPLVREAVGEFFGRTPLTSIDPDKVVAIGAAIQADILAGNKPD-SDMLLLDVIPL 394 (616)
T ss_pred HHHHHHcCCCcccCCEEEEECCcccChHHHHHHHHHhccCcCcCCCchHHHHHHHHHHHHHhcccccc-CceEEEeeccc
Confidence 99999999999999999999999999999999999999888889999999999999999999876543 35889999999
Q ss_pred cceEEeeccEEEEEEecCCcCCCCcEEEEEeecccccceeEEEeecCcccccCCceeEEEEeeCCCCCCCCccEEEEEEE
Q psy15216 2413 SLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQ 2492 (2602)
Q Consensus 2413 ~~gi~~~~~~~~~ii~k~t~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~f~ 2492 (2602)
+||+++.+|.+.+||+||++||+++++.|++..|+|+.+.|.||||++..+.+|..||+|.|+++||.|+|.++|+|+|+
T Consensus 395 slgi~~~~g~~~~ii~r~t~iP~~~~~~~~t~~d~q~~v~i~v~qGe~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~ 474 (616)
T PRK05183 395 SLGLETMGGLVEKIIPRNTTIPVARAQEFTTFKDGQTAMAIHVVQGERELVADCRSLARFELRGIPPMAAGAARIRVTFQ 474 (616)
T ss_pred cccceecCCeEEEEEeCCCcccccccEEEEeccCCCeEEEEEEecccccccccccEEEEEEeCCCCCCCCCCccEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCccEEEEEEeecCCcEEEEEEecCCCCChHHHhcc
Q psy15216 2493 VDADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKNG 2530 (2602)
Q Consensus 2493 id~~g~l~V~a~~~~tg~~~~~~i~~~~~l~~~ei~~~ 2530 (2602)
+|.||+|+|+|+++.||++..+++....+||++||++.
T Consensus 475 ~d~~Gil~V~a~~~~~~~~~~~~i~~~~~ls~~~i~~~ 512 (616)
T PRK05183 475 VDADGLLSVTAMEKSTGVEASIQVKPSYGLTDDEIARM 512 (616)
T ss_pred ECCCCeEEEEEEEcCCCcEEEecccccccCCHHHHHHH
Confidence 99999999999999999999999987788999999864
|
|
| >CHL00094 dnaK heat shock protein 70 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-76 Score=799.82 Aligned_cols=494 Identities=43% Similarity=0.661 Sum_probs=459.4
Q ss_pred eEEEEEcCcccEEEEEEECCeeEEEeCCCCCccccEEEEEecCCcEEEcHHHHhhhccCCCCchhhhhhhhCCCCCCCCC
Q psy15216 638 VSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNINT 717 (2602)
Q Consensus 638 ~vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~v~~~~~~~~~vG~~A~~~~~~~p~~~~~~~K~~lg~~~~~~~~ 717 (2602)
.+||||||||||+||++++|.|++++|..|++.+||+|+|.+++++++|..|+.+...+|.++++++||+||+++.++..
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~~~~~ 82 (621)
T CHL00094 3 KVVGIDLGTTNSVVAVMEGGKPTVIPNAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVINPENTFYSVKRFIGRKFSEISE 82 (621)
T ss_pred ceEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEcCCCCEEECHHHHHhHHhCccceehhhHHhcCCChHHHHh
Confidence 68999999999999999999999999999999999999998777899999999999999999999999999999876433
Q ss_pred --CCCCeeee-cCCCceEEEE--eCceeCHHHHHHHHHHHHHHHHHHhhcCccceEEEEEcCCCCHHHHHHHHHHHHHcC
Q psy15216 718 --NSFPYDFQ-NKFGMLHIKT--ISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAG 792 (2602)
Q Consensus 718 --~~~~~~~~-~~~~~~~~~~--~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~~~~Aa~~AG 792 (2602)
..+||.+. ..+|.+.+.. .+..++|+++++++|++|++.|+.++|.++.++|||||++|++.||+++++||++||
T Consensus 83 ~~~~~~~~v~~~~~g~i~~~~~~~~~~~s~eei~a~iL~~l~~~ae~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa~~AG 162 (621)
T CHL00094 83 EAKQVSYKVKTDSNGNIKIECPALNKDFSPEEISAQVLRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDAGKIAG 162 (621)
T ss_pred hhhcCCeEEEECCCCCEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHcC
Confidence 36889887 3456666554 356889999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEechhHHHHHHhhhccCcccceEEEEEeCCceEEEEEEEEECCEEEEEEEecCCCCcchHHHHHHHHHHHHHHhh
Q psy15216 793 LNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFL 872 (2602)
Q Consensus 793 l~~~~li~EPtAAAl~y~~~~~~~~~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~ 872 (2602)
|++++||+||+|||++|+.... .++.+||||+||||||+||+++.++.++|+++.|+.++||++||++|++|+.++|..
T Consensus 163 l~v~~li~EptAAAlay~~~~~-~~~~vlV~DlGgGT~DvSv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~~~~~~~~ 241 (621)
T CHL00094 163 LEVLRIINEPTAASLAYGLDKK-NNETILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKKIVNWLIKEFKK 241 (621)
T ss_pred CceEEEeccHHHHHHHhccccC-CCCEEEEEEcCCCeEEEEEEEEcCCEEEEEEEecCCCcChHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998654 467899999999999999999999999999999999999999999999999999875
Q ss_pred cc-----CCHHHHHHHHHHHHHHHHHcccccceEEEEEec-----CCceEEEEeCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15216 873 KK-----LSYKDVNILMIKSREIKELLSYQSSVKLNVKLS-----DKKIVNITIDMKQFFTITQHLVNRTILLSSKALMD 942 (2602)
Q Consensus 873 ~~-----~~~~~~~~l~~~~e~~K~~LS~~~~~~~~i~~~-----~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~ 942 (2602)
+. .+++.+.+|+.+||++|+.||...++.+.++.. ++.++..+|||++||++++++++++..+|+++|++
T Consensus 242 ~~~~~~~~~~~~~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~~~~~~i~~~L~~ 321 (621)
T CHL00094 242 KEGIDLSKDRQALQRLTEAAEKAKIELSNLTQTEINLPFITATQTGPKHIEKTLTRAKFEELCSDLINRCRIPVENALKD 321 (621)
T ss_pred HhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeecccCCCCCeeEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54 367888999999999999999998888888742 23578899999999999999999999999999999
Q ss_pred cCCCccccceEEEecCccchHHHHHHHHhhccCcccCcCCcchHhHHHHHHHhHHhcCCCCCCCceeeeccccccceEee
Q psy15216 943 ANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIET 1022 (2602)
Q Consensus 943 a~~~~~~i~~V~LvGG~sr~P~v~~~l~~~f~~~~~~~~~p~~aVa~GAa~~a~~l~~~~~~~~~~~~~dv~~~~~gi~~ 1022 (2602)
+++.+.+|+.|+||||+||||.|++.|+++||.++..+.||++|||+|||++|+++++.. +++.+.|++|++||++.
T Consensus 322 a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~~pdeava~GAA~~aa~ls~~~---~~~~~~d~~~~~lgi~~ 398 (621)
T CHL00094 322 AKLDKSDIDEVVLVGGSTRIPAIQELVKKLLGKKPNQSVNPDEVVAIGAAVQAGVLAGEV---KDILLLDVTPLSLGVET 398 (621)
T ss_pred cCCChhhCcEEEEECCccCChHHHHHHHHHhCCCcCcCCCchhHHHhhhHHHHHHhcCCc---cceeeeeeeceeeeeec
Confidence 999999999999999999999999999999998888999999999999999999998743 36889999999999999
Q ss_pred eccEEEEEEecCCCCCCCcEEEEEeccccccceeeeEeecCccccccCceeeeeEecCCCCCCCCccEEEEEEEECCCee
Q psy15216 1023 IGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADGL 1102 (2602)
Q Consensus 1023 ~~~~~~~ii~~~t~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~i~~~~~g~~~i~v~f~~d~~g~ 1102 (2602)
.++.+.+|||||++||+++++.|++..|+|+.+.|.||||++..+.+|..||+|.|+++||.++|.++|+|+|++|.||+
T Consensus 399 ~~~~~~~ii~~~t~iP~~~~~~~~~~~~~q~~v~i~i~~ge~~~~~~n~~lg~~~i~~~~~~~~g~~~i~v~f~id~~Gi 478 (621)
T CHL00094 399 LGGVMTKIIPRNTTIPTKKSEVFSTAVDNQTNVEIHVLQGERELAKDNKSLGTFRLDGIPPAPRGVPQIEVTFDIDANGI 478 (621)
T ss_pred cCCEEEEEEeCCCccceeeeEEEEeccCCCcEEEEEEEeeccccCCCCCEEEEEEEeCCCCCCCCCCcEEEEEEECCCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEecCCceEEEEEecCCCCCHHHHHhhh
Q psy15216 1103 LSIFAYEKISGKKKFITIKPFYNMNLDEIKNGA 1135 (2602)
Q Consensus 1103 l~v~a~~~~~g~~~~~~~~~~~~l~~~~i~~~~ 1135 (2602)
|+|++.+..||++..+++....+||++||++++
T Consensus 479 l~v~~~~~~t~~~~~~~i~~~~~ls~~~i~~~~ 511 (621)
T CHL00094 479 LSVTAKDKGTGKEQSITIQGASTLPKDEVERMV 511 (621)
T ss_pred EEEEEeeccCCceeeeeeccchhccHHHHHHHH
Confidence 999999999999999999877789999999986
|
|
| >PRK13411 molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-76 Score=795.13 Aligned_cols=493 Identities=42% Similarity=0.628 Sum_probs=455.1
Q ss_pred eEEEEEcCcccEEEEEEECCeEEEEeCCCCCccccEEEEEecCCcEEecHHHHhhhccCCCCchhhhhhhcCCCCCCCC-
Q psy15216 2034 VSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNIN- 2112 (2602)
Q Consensus 2034 ~vvGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~~~~~~vG~~A~~~~~~~p~~~~~~~K~~lg~~~~~~~- 2112 (2602)
.+||||||||||+||++++|++.+++|..|++.+||+|+|.++++++||..|+.+...+|.++++++|||||+++.+..
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~~ 82 (653)
T PRK13411 3 KVIGIDLGTTNSCVAVLEGGKPIVIPNSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVTNAENTVYSIKRFIGRRWDDTEE 82 (653)
T ss_pred cEEEEEeCcccEEEEEEECCEEEEEECCCCCccCceEEEEeCCCCEEEcHHHHHhhhhCcccchHHHHHHhCCCccchhH
Confidence 5899999999999999999999999999999999999999877789999999999999999999999999999986643
Q ss_pred -CCCCCeeee-cCCCceEEEecCceeCHHHHHHHHHHHHHHHHHHhhccccceEEEeeCCCCCHHHHHHHHHHHHHcCCc
Q psy15216 2113 -TNSFPYDFQ-NKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLN 2190 (2602)
Q Consensus 2113 -~~~~~~~~~-~~~g~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~l~~Aa~~AGl~ 2190 (2602)
...+||.+. ..++.+.+...+..++|+++++++|++|++.|+.++|.++.++|||||++|++.||+++++||+.|||+
T Consensus 83 ~~~~~~~~~v~~~~~~~~~~i~~~~~~peei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~AGl~ 162 (653)
T PRK13411 83 ERSRVPYTCVKGRDDTVNVQIRGRNYTPQEISAMILQKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKDAGTIAGLE 162 (653)
T ss_pred HhhcCCceEEecCCCceEEEECCEEECHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCcHHHHHHHHHHHHcCCC
Confidence 346788764 455666667677789999999999999999999999999999999999999999999999999999999
Q ss_pred eeEeechhHHHHHHhhhccCCCCceEEEEEeCCceEEEEEEEEeCCEEEEEEEecCCCCchhHHHHHHHHHHHHHHhhhc
Q psy15216 2191 VLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKK 2270 (2602)
Q Consensus 2191 ~~~li~EP~AAAl~y~~~~~~~~~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~~ 2270 (2602)
+++||+||+|||++|++.....++++||||+||||||+||+++.++.++|+++.|+.++||.+||++|++|+.+++ .++
T Consensus 163 v~~li~EPtAAAl~y~~~~~~~~~~vlV~DlGgGT~dvsi~~~~~~~~~V~at~gd~~LGG~dfD~~l~~~l~~~f-~~~ 241 (653)
T PRK13411 163 VLRIINEPTAAALAYGLDKQDQEQLILVFDLGGGTFDVSILQLGDGVFEVKATAGNNHLGGDDFDNCIVDWLVENF-QQQ 241 (653)
T ss_pred eEEEecchHHHHHHhcccccCCCCEEEEEEcCCCeEEEEEEEEeCCEEEEEEEecCCCcCHHHHHHHHHHHHHHHH-HHh
Confidence 9999999999999999876555778999999999999999999999999999999999999999999999999874 332
Q ss_pred C------ChhHHHHHHHHHHHHHHHhcccceEEEEEEec-----CCceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy15216 2271 L------SYKDVNILMIKSREIKELLSYQSSVKLNVKLS-----DKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDA 2339 (2602)
Q Consensus 2271 ~------~~~~~~~l~~~~e~~K~~ls~~~~~~~~i~~~-----~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~~ 2339 (2602)
. ....+.+|+.+||++|+.||...++.++++.. ++.++++.|||++|+++++|+++++.++++++|+++
T Consensus 242 ~~~d~~~~~~~~~rL~~~aE~aK~~LS~~~~~~i~i~~~~~d~~~~~~~~~~itR~~fe~l~~~l~~~~~~~i~~~L~~a 321 (653)
T PRK13411 242 EGIDLSQDKMALQRLREAAEKAKIELSSMLTTSINLPFITADETGPKHLEMELTRAKFEELTKDLVEATIEPMQQALKDA 321 (653)
T ss_pred hCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeccCCCCCeeEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 2 23456789999999999999999888888732 235789999999999999999999999999999999
Q ss_pred CCCccccceEEEEeCccchHHHHHHHHhhcC-CcccCCCCccchhhhHHHHHhHHhcCCCCCCCceeeeccccccceEEe
Q psy15216 2340 NLTIKDINNVILVGGSTRMKHIHEGVSNFFK-TTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIET 2418 (2602)
Q Consensus 2340 ~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~-~~~~~~~~p~~aVa~GAa~~a~~~~~~~~~~~~~~~~d~~~~~~gi~~ 2418 (2602)
++.+.+|+.|+||||+||||+||++|+++|+ .++..+.||++|||+|||++|+.+++. .+++.+.|++|++||+++
T Consensus 322 ~~~~~~id~ViLvGGssriP~v~~~l~~~f~~~~~~~~~npdeaVA~GAAi~aa~l~~~---~~~~~~~dv~p~slgi~~ 398 (653)
T PRK13411 322 GLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVNPDEAVALGAAIQAGVLGGE---VKDLLLLDVTPLSLGIET 398 (653)
T ss_pred CCCHHHCcEEEEECCCCCcchHHHHHHHHcCCcCcCCCCCchHHHHHHHHHHHHhhcCC---ccceeeeecccceeeEEe
Confidence 9999999999999999999999999999997 578889999999999999999999875 245889999999999999
Q ss_pred eccEEEEEEecCCcCCCCcEEEEEeecccccceeEEEeecCcccccCCceeEEEEeeCCCCCCCCccEEEEEEEEcCCcc
Q psy15216 2419 IGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADGL 2498 (2602)
Q Consensus 2419 ~~~~~~~ii~k~t~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~f~id~~g~ 2498 (2602)
.++.|.+||+||++||+++++.|++..|+|+.+.|.||||++..+++|..||+|.|.++||.+.|.++|+|+|++|.||+
T Consensus 399 ~~~~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~Gi 478 (653)
T PRK13411 399 LGEVFTKIIERNTTIPTSKSQVFSTATDGQTSVEIHVLQGERAMAKDNKSLGKFLLTGIPPAPRGVPQIEVSFEIDVNGI 478 (653)
T ss_pred cCCceEEEEECCCcccceeeEEEEeccCCCeEEEEEEEEecCcccccCceeeEEEEcCCCCCCCCCccEEEEEEECCCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeecCCcEEEEEEecCCCCChHHHhcc
Q psy15216 2499 LSIFAYEKISGKKKFITIKPFYNMNLDEIKNG 2530 (2602)
Q Consensus 2499 l~V~a~~~~tg~~~~~~i~~~~~l~~~ei~~~ 2530 (2602)
|+|++.+..||++..+++....+||++||++.
T Consensus 479 l~v~a~d~~t~~~~~~~i~~~~~ls~~ei~~~ 510 (653)
T PRK13411 479 LKVSAQDQGTGREQSIRITNTGGLSSNEIERM 510 (653)
T ss_pred EEEEEeeccCCceEeeEEeccccchHHHHHHH
Confidence 99999999999999999988788999999965
|
|
| >COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-76 Score=776.42 Aligned_cols=488 Identities=45% Similarity=0.641 Sum_probs=457.7
Q ss_pred CceEEEEEcCcccEEEEEEECC-eeEEEeCCCCCccccEEEEEecCCcEEEcHHHHhhhccCCCCchhhhhhhhCCCCCC
Q psy15216 636 KCVSIGIDFGTTNSLVAIVRNN-IPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKN 714 (2602)
Q Consensus 636 ~~~vvGID~GTt~s~va~~~~~-~~~ii~~~~g~~~~PS~v~~~~~~~~~vG~~A~~~~~~~p~~~~~~~K~~lg~~~~~ 714 (2602)
.+.+|||||||||||||+++++ .+.++.|..|.+.+||+|+|.+++++++|..|++++..+|.++++.+||++|+....
T Consensus 4 ~~~~iGIDlGTTNS~vA~~~~~~~~~vi~n~~g~r~~PSvv~f~~~~~~~vG~~A~~q~~~~p~~t~~~~kr~~G~~~~~ 83 (579)
T COG0443 4 AKKAIGIDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNPENTIFSIKRKIGRGSNG 83 (579)
T ss_pred CceEEEEEcCCCcEEEEEEeCCCCceEecCCCCCcccceEEEECCCCCEEecHHHHHHhhhCCcceEEEEehhcCCCCCC
Confidence 3578999999999999999988 799999999999999999999887899999999999999999999999999987211
Q ss_pred CCCCCCCeeeecCCCceEEEEeCceeCHHHHHHHHHHHHHHHHHHhhcCccceEEEEEcCCCCHHHHHHHHHHHHHcCCc
Q psy15216 715 INTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLN 794 (2602)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~~~~Aa~~AGl~ 794 (2602)
....+...++.++|+++++++|++||+.|+.+++..+.++||||||||++.||+++++|+++|||+
T Consensus 84 --------------~~~~~~~~~~~~~~eeisa~~L~~lk~~ae~~lg~~v~~~VItVPayF~d~qR~at~~A~~iaGl~ 149 (579)
T COG0443 84 --------------LKISVEVDGKKYTPEEISAMILTKLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATKDAARIAGLN 149 (579)
T ss_pred --------------CcceeeeCCeeeCHHHHHHHHHHHHHHHHHHhhCCCcceEEEEeCCCCCHHHHHHHHHHHHHcCCC
Confidence 012233445789999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEechhHHHHHHhhhccCcccceEEEEEeCCceEEEEEEEEECCEEEEEEEecCCCCcchHHHHHHHHHHHHHHhhcc
Q psy15216 795 VLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKK 874 (2602)
Q Consensus 795 ~~~li~EPtAAAl~y~~~~~~~~~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~~ 874 (2602)
++++|+||||||++|+++.. .+++|+|||+||||||+|++++.++.++|+++.||.++||+|||.+|++|+.++|..+.
T Consensus 150 vlrlinEPtAAAlayg~~~~-~~~~vlV~DlGGGTfDvSll~~~~g~~ev~at~gd~~LGGddfD~~l~~~~~~~f~~~~ 228 (579)
T COG0443 150 VLRLINEPTAAALAYGLDKG-KEKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDNALIDYLVMEFKGKG 228 (579)
T ss_pred eEEEecchHHHHHHhHhccC-CCcEEEEEEcCCCCEEEEEEEEcCCEEEEeecCCCcccCchhHHHHHHHHHHHHhhccC
Confidence 99999999999999999887 77899999999999999999999999999999999999999999999999999997665
Q ss_pred -----CCHHHHHHHHHHHHHHHHHcccccceEEEEEe-cCCceEEEEeCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Q psy15216 875 -----LSYKDVNILMIKSREIKELLSYQSSVKLNVKL-SDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIK 948 (2602)
Q Consensus 875 -----~~~~~~~~l~~~~e~~K~~LS~~~~~~~~i~~-~~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~a~~~~~ 948 (2602)
.+...+++|+.+||++|+.||...++.+.+++ .++.++..+|||++||.++.++++++...++++++++++++.
T Consensus 229 ~~d~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~~~~~~~~~~~~~~ltR~~~E~l~~dll~r~~~~~~~al~~a~l~~~ 308 (579)
T COG0443 229 GIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGDIDLLKELTRAKFEELILDLLERTIEPVEQALKDAGLEKS 308 (579)
T ss_pred CccccccHHHHHHHHHHHHHHHHHcccccccccchhhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCChh
Confidence 46678899999999999999999999999874 444678899999999999999999999999999999999999
Q ss_pred ccceEEEecCccchHHHHHHHHhhccCcccCcCCcchHhHHHHHHHhHHhcCCCCCCCceeeeccccccceEeeeccEEE
Q psy15216 949 DINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVE 1028 (2602)
Q Consensus 949 ~i~~V~LvGG~sr~P~v~~~l~~~f~~~~~~~~~p~~aVa~GAa~~a~~l~~~~~~~~~~~~~dv~~~~~gi~~~~~~~~ 1028 (2602)
+|+.|+||||+||||.|++.++++|+.++...+||+++||.|||++|+.+++... ++++.|++|+++|+++.++.+.
T Consensus 309 ~I~~VilvGGstriP~V~~~v~~~f~~~~~~~inpdeava~GAa~qa~~l~~~~~---d~ll~Dv~plslgie~~~~~~~ 385 (579)
T COG0443 309 DIDLVILVGGSTRIPAVQELVKEFFGKEPEKSINPDEAVALGAAIQAAVLSGEVP---DVLLLDVIPLSLGIETLGGVRT 385 (579)
T ss_pred hCceEEEccceeccHHHHHHHHHHhCccccccCCccHHHHHHHHHHHHhhcCccc---CceEEeeeeeccccccCcchhh
Confidence 9999999999999999999999999999999999999999999999999998754 7889999999999999999999
Q ss_pred EEEecCCCCCCCcEEEEEeccccccceeeeEeecCccccccCceeeeeEecCCCCCCCCccEEEEEEEECCCeeEEEEEE
Q psy15216 1029 KIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAY 1108 (2602)
Q Consensus 1029 ~ii~~~t~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~i~~~~~g~~~i~v~f~~d~~g~l~v~a~ 1108 (2602)
.+|+||+++|++++..|++..|+|+.+.++++|||....++|..+|.|.+.++||.++|.++|+|+|.+|.||+++|+++
T Consensus 386 ~ii~rn~~iP~~~~~~f~t~~d~q~~~~i~v~qge~~~~~~~~~lg~f~l~~i~~~~~g~~~i~v~f~iD~~gi~~v~a~ 465 (579)
T COG0443 386 PIIERNTTIPVKKSQEFSTAADGQTAVAIHVFQGEREMAADNKSLGRFELDGIPPAPRGVPQIEVTFDIDANGILNVTAK 465 (579)
T ss_pred hHHhcCCCCCcccceEEEeecCCCceeEEEEEecchhhcccCceeEEEECCCCCCCCCCCCceEEEeccCCCcceEeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCceEEEEEecCCCCCHHHHHhhhhccccCCC
Q psy15216 1109 EKISGKKKFITIKPFYNMNLDEIKNGAIFNENSGI 1143 (2602)
Q Consensus 1109 ~~~~g~~~~~~~~~~~~l~~~~i~~~~~~~~~~g~ 1143 (2602)
++.+|++..++|...++|++++|++|. ++++..
T Consensus 466 ~~~~~k~~~i~i~~~~~ls~~~i~~~~--~~a~~~ 498 (579)
T COG0443 466 DLGTGKEQSITIKASSGLSDEEIERMV--EDAEAN 498 (579)
T ss_pred cccCCceEEEEEecCCCCCHHHHHHHH--HHHHHH
Confidence 999999999999999899999999986 544443
|
|
| >PTZ00400 DnaK-type molecular chaperone; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-75 Score=784.26 Aligned_cols=493 Identities=41% Similarity=0.633 Sum_probs=455.2
Q ss_pred ceEEEEEcCcccEEEEEEECCeEEEEeCCCCCccccEEEEEecCCcEEecHHHHhhhccCCCCchhhhhhhcCCCCCCCC
Q psy15216 2033 CVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNIN 2112 (2602)
Q Consensus 2033 ~~vvGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~~~~~~vG~~A~~~~~~~p~~~~~~~K~~lg~~~~~~~ 2112 (2602)
..+||||||||||+||++++|.+++++|..|+|.+||+|+|.+++++++|..|+.+...+|.++++++||+||+++.+..
T Consensus 41 ~~viGIDlGTt~s~va~~~~~~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~ 120 (663)
T PTZ00400 41 GDIVGIDLGTTNSCVAIMEGSQPKVIENSEGMRTTPSVVAFTEDGQRLVGIVAKRQAVTNPENTVFATKRLIGRRYDEDA 120 (663)
T ss_pred CcEEEEEECcccEEEEEEeCCeeEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhHHhCCcceehhhhhhcCCCcCcHH
Confidence 35999999999999999999999999999999999999999877789999999999999999999999999999987642
Q ss_pred ----CCCCCeeee-cCCCceEEEecCceeCHHHHHHHHHHHHHHHHHHhhccccceEEEeeCCCCCHHHHHHHHHHHHHc
Q psy15216 2113 ----TNSFPYDFQ-NKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLA 2187 (2602)
Q Consensus 2113 ----~~~~~~~~~-~~~g~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~l~~Aa~~A 2187 (2602)
...+||.+. ..++...+...+..++|+++++++|++|++.|+.++|.++.++|||||++|++.||+++++||+.|
T Consensus 121 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~A 200 (663)
T PTZ00400 121 TKKEQKILPYKIVRASNGDAWIEAQGKKYSPSQIGAFVLEKMKETAESYLGRKVKQAVITVPAYFNDSQRQATKDAGKIA 200 (663)
T ss_pred HHhhhccCCeEEEecCCCceEEEECCEEECHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHHHHHHc
Confidence 356888864 455666666677789999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEeechhHHHHHHhhhccCCCCceEEEEEeCCceEEEEEEEEeCCEEEEEEEecCCCCchhHHHHHHHHHHHHHHh
Q psy15216 2188 GLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAF 2267 (2602)
Q Consensus 2188 Gl~~~~li~EP~AAAl~y~~~~~~~~~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~ 2267 (2602)
|+++++||+||+|||++|+.... .++.+||||+||||||+||+++.++.++|+++.|+..+||.+||.+|++|+.++ |
T Consensus 201 Gl~v~~li~EptAAAlay~~~~~-~~~~vlV~DlGgGT~DvSv~~~~~g~~~v~a~~gd~~LGG~d~D~~l~~~l~~~-f 278 (663)
T PTZ00400 201 GLDVLRIINEPTAAALAFGMDKN-DGKTIAVYDLGGGTFDISILEILGGVFEVKATNGNTSLGGEDFDQRILNYLIAE-F 278 (663)
T ss_pred CCceEEEeCchHHHHHHhccccC-CCcEEEEEeCCCCeEEEEEEEecCCeeEEEecccCCCcCHHHHHHHHHHHHHHH-h
Confidence 99999999999999999987653 467899999999999999999999999999999999999999999999999987 4
Q ss_pred hhcC------ChhHHHHHHHHHHHHHHHhcccceEEEEEEec-----CCceEEEEcCHHHHHHHHHHHHHHHHHHHHHHH
Q psy15216 2268 LKKL------SYKDVNILMIKSREIKELLSYQSSVKLNVKLS-----DKKIVNITIDMKQFFTITQHLVNRTILLSSKAL 2336 (2602)
Q Consensus 2268 ~~~~------~~~~~~~l~~~~e~~K~~ls~~~~~~~~i~~~-----~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~l 2336 (2602)
.++. ....+.+|+.+||++|+.||...++.+.++.. ++.++.++|||++|+++++|+++++.++++++|
T Consensus 279 ~~~~~~~~~~~~~a~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~efe~l~~~l~~~~~~~i~~~L 358 (663)
T PTZ00400 279 KKQQGIDLKKDKLALQRLREAAETAKIELSSKTQTEINLPFITADQSGPKHLQIKLSRAKLEELTHDLLKKTIEPCEKCI 358 (663)
T ss_pred hhhcCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEEEeeccCCCCceEEEEEECHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3332 22456789999999999999998888887732 224789999999999999999999999999999
Q ss_pred HHcCCCccccceEEEEeCccchHHHHHHHHhhcCCcccCCCCccchhhhHHHHHhHHhcCCCCCCCceeeeccccccceE
Q psy15216 2337 MDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGI 2416 (2602)
Q Consensus 2337 ~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~aVa~GAa~~a~~~~~~~~~~~~~~~~d~~~~~~gi 2416 (2602)
+++++.+.+|+.|+||||+||+|+||++|+++||.++....||+++||+|||++|+.+++.. .++.+.|++|++||+
T Consensus 359 ~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f~~~~~~~~npdeaVA~GAAi~aa~l~~~~---~~~~~~dv~p~slgi 435 (663)
T PTZ00400 359 KDAGVKKDELNDVILVGGMTRMPKVSETVKKIFGKEPSKGVNPDEAVAMGAAIQAGVLKGEI---KDLLLLDVTPLSLGI 435 (663)
T ss_pred HHcCCCHHHCcEEEEECCccCChHHHHHHHHHhCCCcccCCCCccceeeccHHHHHhhcCCc---cceEEEeccccceEE
Confidence 99999999999999999999999999999999999889999999999999999999998742 358899999999999
Q ss_pred EeeccEEEEEEecCCcCCCCcEEEEEeecccccceeEEEeecCcccccCCceeEEEEeeCCCCCCCCccEEEEEEEEcCC
Q psy15216 2417 ETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDAD 2496 (2602)
Q Consensus 2417 ~~~~~~~~~ii~k~t~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~f~id~~ 2496 (2602)
++.+|.|.+||+||++||+++++.|++..|+|+.+.|.||||++..+++|..||+|.|.++||.++|.++|+|+|++|.|
T Consensus 436 ~~~~g~~~~ii~~~t~iP~~~~~~f~~~~d~q~~~~i~i~ege~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~id~~ 515 (663)
T PTZ00400 436 ETLGGVFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVFQGEREMAADNKLLGQFDLVGIPPAPRGVPQIEVTFDVDAN 515 (663)
T ss_pred EecCCeeEEEEecCccCCccceeeeeeccCCCceEEEEEEEecCccCCcCceeEEEEEcCCCCCCCCCceEEEEEEECCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEEEeecCCcEEEEEEecCCCCChHHHhcc
Q psy15216 2497 GLLSIFAYEKISGKKKFITIKPFYNMNLDEIKNG 2530 (2602)
Q Consensus 2497 g~l~V~a~~~~tg~~~~~~i~~~~~l~~~ei~~~ 2530 (2602)
|+|+|++.++.||++..+++....+||++||++.
T Consensus 516 Gil~v~a~~~~~~~~~~~~i~~~~~ls~~ei~~~ 549 (663)
T PTZ00400 516 GIMNISAVDKSTGKKQEITIQSSGGLSDEEIEKM 549 (663)
T ss_pred CCEEEEEEeccCCcEEEEEeeccccccHHHHHHH
Confidence 9999999999999999999988888999999975
|
|
| >PLN03184 chloroplast Hsp70; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-75 Score=780.41 Aligned_cols=493 Identities=40% Similarity=0.637 Sum_probs=452.8
Q ss_pred ceEEEEEcCcccEEEEEEECCeEEEEeCCCCCccccEEEEEecCCcEEecHHHHhhhccCCCCchhhhhhhcCCCCCCC-
Q psy15216 2033 CVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNI- 2111 (2602)
Q Consensus 2033 ~~vvGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~~~~~~vG~~A~~~~~~~p~~~~~~~K~~lg~~~~~~- 2111 (2602)
..+||||||||||+||++++|+|++++|..|++.+||+|+|..++++++|..|+.+...+|.++++++|||||+++.+.
T Consensus 39 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~ 118 (673)
T PLN03184 39 EKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSEVD 118 (673)
T ss_pred CCEEEEEeCcCcEEEEEEECCeEEEEECCCCCeecceEEEEcCCCCEEECHHHHHhhhhCchhhhHHHHHhhCCCcchhh
Confidence 3599999999999999999999999999999999999999987778999999999999999999999999999987653
Q ss_pred -CCCCCCeeee-cCCCceEEEe--cCceeCHHHHHHHHHHHHHHHHHHhhccccceEEEeeCCCCCHHHHHHHHHHHHHc
Q psy15216 2112 -NTNSFPYDFQ-NKFGMLHIKT--ISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLA 2187 (2602)
Q Consensus 2112 -~~~~~~~~~~-~~~g~~~~~~--~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~l~~Aa~~A 2187 (2602)
....+||++. ..++.+.+.. .+..++|+++++++|++|++.|+.+++.++.++|||||++|++.||+++++||+.|
T Consensus 119 ~~~~~~~~~v~~~~~~~v~~~~~~~~~~~speei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~A 198 (673)
T PLN03184 119 EESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKVTKAVITVPAYFNDSQRTATKDAGRIA 198 (673)
T ss_pred hhhhcCCeEEEecCCCcEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHC
Confidence 2356788874 3455555443 35689999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEeechhHHHHHHhhhccCCCCceEEEEEeCCceEEEEEEEEeCCEEEEEEEecCCCCchhHHHHHHHHHHHHHHh
Q psy15216 2188 GLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAF 2267 (2602)
Q Consensus 2188 Gl~~~~li~EP~AAAl~y~~~~~~~~~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~ 2267 (2602)
||++++||+||+|||++|+.... .++++||||+||||||+||+++.++.++|+++.|+.++||.+||++|++|+.++ |
T Consensus 199 Gl~v~~li~EPtAAAlayg~~~~-~~~~vlV~DlGgGT~DvSi~~~~~~~~eVla~~gd~~LGG~dfD~~L~~~~~~~-f 276 (673)
T PLN03184 199 GLEVLRIINEPTAASLAYGFEKK-SNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASN-F 276 (673)
T ss_pred CCCeEEEeCcHHHHHHHhhcccC-CCCEEEEEECCCCeEEEEEEEecCCEEEEEEecCCCccCHHHHHHHHHHHHHHH-H
Confidence 99999999999999999987654 457899999999999999999999999999999999999999999999999987 4
Q ss_pred hhcC------ChhHHHHHHHHHHHHHHHhcccceEEEEEEec-----CCceEEEEcCHHHHHHHHHHHHHHHHHHHHHHH
Q psy15216 2268 LKKL------SYKDVNILMIKSREIKELLSYQSSVKLNVKLS-----DKKIVNITIDMKQFFTITQHLVNRTILLSSKAL 2336 (2602)
Q Consensus 2268 ~~~~------~~~~~~~l~~~~e~~K~~ls~~~~~~~~i~~~-----~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~l 2336 (2602)
.++. ..+.+.+|+.+||++|+.||...++.+.++.. ++.+++++|||++||++++++++++..+|+++|
T Consensus 277 ~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~r~~~~i~~~L 356 (673)
T PLN03184 277 KKDEGIDLLKDKQALQRLTEAAEKAKIELSSLTQTSISLPFITATADGPKHIDTTLTRAKFEELCSDLLDRCKTPVENAL 356 (673)
T ss_pred HhhcCCCcccCHHHHHHHHHHHHHHHHhcCCCCcceEEEEeeeccCCCCceEEEEECHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4332 23467789999999999999999888887632 235788999999999999999999999999999
Q ss_pred HHcCCCccccceEEEEeCccchHHHHHHHHhhcCCcccCCCCccchhhhHHHHHhHHhcCCCCCCCceeeeccccccceE
Q psy15216 2337 MDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGI 2416 (2602)
Q Consensus 2337 ~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~aVa~GAa~~a~~~~~~~~~~~~~~~~d~~~~~~gi 2416 (2602)
+++++.+.+|+.|+||||+||||.||++|+++||.++....||++|||+|||++|+.+++.. .++.+.|++|++||+
T Consensus 357 ~~a~~~~~dId~ViLvGGssriP~V~~~i~~~fg~~~~~~~npdeaVA~GAAi~aa~ls~~~---~~~~~~dv~p~slgi 433 (673)
T PLN03184 357 RDAKLSFKDIDEVILVGGSTRIPAVQELVKKLTGKDPNVTVNPDEVVALGAAVQAGVLAGEV---SDIVLLDVTPLSLGL 433 (673)
T ss_pred HHcCCChhHccEEEEECCccccHHHHHHHHHHhCCCcccccCcchHHHHHHHHHHHHhccCc---cceEEEecccccceE
Confidence 99999999999999999999999999999999998888999999999999999999998742 358899999999999
Q ss_pred EeeccEEEEEEecCCcCCCCcEEEEEeecccccceeEEEeecCcccccCCceeEEEEeeCCCCCCCCccEEEEEEEEcCC
Q psy15216 2417 ETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDAD 2496 (2602)
Q Consensus 2417 ~~~~~~~~~ii~k~t~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~f~id~~ 2496 (2602)
++.++.+.+||+||++||+++++.|++..|+|+.+.|.||||++....+|..||+|.|+++||.++|.++|+|+|++|.|
T Consensus 434 ~~~~~~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~i~~ge~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~id~~ 513 (673)
T PLN03184 434 ETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDAN 513 (673)
T ss_pred EecCCeeEEEEeCCCccceecceEeeeecCCCcEEEEEEEeecccccccCceEEEEEEeCCCCCCCCCceEEEEEEeCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998999999999999
Q ss_pred ccEEEEEEeecCCcEEEEEEecCCCCChHHHhcc
Q psy15216 2497 GLLSIFAYEKISGKKKFITIKPFYNMNLDEIKNG 2530 (2602)
Q Consensus 2497 g~l~V~a~~~~tg~~~~~~i~~~~~l~~~ei~~~ 2530 (2602)
|+|+|++.+..||++..+++....+||++||++.
T Consensus 514 GiL~V~a~~~~t~~~~~~~i~~~~~ls~eei~~~ 547 (673)
T PLN03184 514 GILSVSATDKGTGKKQDITITGASTLPKDEVERM 547 (673)
T ss_pred CeEEEEEEecCCCeEEEEEecccccccHHHHHHH
Confidence 9999999999999999999987788999999864
|
|
| >PRK01433 hscA chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-75 Score=767.26 Aligned_cols=482 Identities=43% Similarity=0.670 Sum_probs=427.9
Q ss_pred hcccCCCCcccccC-cceEEEEEcCcccEEEEEEECCeEEEEeCCCCCccccEEEEEecCCcEEecHHHHhhhccCCCCc
Q psy15216 2018 LLQISEPDDISVKN-KCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNT 2096 (2602)
Q Consensus 2018 ~~~~~~p~~~~~~~-~~~vvGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~~~~~~vG~~A~~~~~~~p~~~ 2096 (2602)
|..+++|.+++... +.++||||||||||+||++.+|++++|+|..|++.+||+|+|.++ +++||..| +
T Consensus 3 ~~~~~~~~~~~~~~~~~~viGIDlGTT~S~va~~~~~~~~ii~n~~g~~~tPS~V~f~~~-~~~vG~~A----------t 71 (595)
T PRK01433 3 IIEIREPEQADFKQERQIAVGIDFGTTNSLIAIATNRKVKVIKSIDDKELIPTTIDFTSN-NFTIGNNK----------G 71 (595)
T ss_pred eEEecCCCCCCccccCceEEEEEcCcccEEEEEEeCCeeEEEECCCCCeecCeEEEEcCC-CEEECchh----------h
Confidence 55677887765333 457999999999999999999999999999999999999999754 58999987 7
Q ss_pred hhhhhhhcCCCCCCCCCCCCCee-----eecCCCceEEEecCceeCHHHHHHHHHHHHHHHHHHhhccccceEEEeeCCC
Q psy15216 2097 ISSIKRFIARDLKNINTNSFPYD-----FQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAY 2171 (2602)
Q Consensus 2097 ~~~~K~~lg~~~~~~~~~~~~~~-----~~~~~g~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~ 2171 (2602)
++++||+||+++.+.......+. +....+...+...+..++|+++++++|++|++.|+.++|.++.++|||||||
T Consensus 72 i~~~KrliG~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~speei~a~iL~~lk~~ae~~lg~~v~~aVITVPa~ 151 (595)
T PRK01433 72 LRSIKRLFGKTLKEILNTPALFSLVKDYLDVNSSELKLNFANKQLRIPEIAAEIFIYLKNQAEEQLKTNITKAVITVPAH 151 (595)
T ss_pred HHHHHHHhCCCchhhccchhhHhhhhheeecCCCeeEEEECCEEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCC
Confidence 99999999998765322111111 1112233445555678999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCceeEeechhHHHHHHhhhccCCCCceEEEEEeCCceEEEEEEEEeCCEEEEEEEecCCCCch
Q psy15216 2172 FNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGG 2251 (2602)
Q Consensus 2172 f~~~qr~~l~~Aa~~AGl~~~~li~EP~AAAl~y~~~~~~~~~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG 2251 (2602)
|++.||+++++||+.||++++++|+||+|||++|++... ..+++||||+||||||+|++++.++.++|+++.||.++||
T Consensus 152 f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlay~~~~~-~~~~vlV~DlGGGT~DvSi~~~~~~~~~V~at~gd~~lGG 230 (595)
T PRK01433 152 FNDAARGEVMLAAKIAGFEVLRLIAEPTAAAYAYGLNKN-QKGCYLVYDLGGGTFDVSILNIQEGIFQVIATNGDNMLGG 230 (595)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCcHHHHHHHhcccC-CCCEEEEEECCCCcEEEEEEEEeCCeEEEEEEcCCcccCh
Confidence 999999999999999999999999999999999988653 3568999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhcccceEEEEEEecCCceEEEEcCHHHHHHHHHHHHHHHHHH
Q psy15216 2252 DDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNRTILL 2331 (2602)
Q Consensus 2252 ~~~D~~l~~~l~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~itr~~fe~l~~~~~~~~~~~ 2331 (2602)
++||.+|++|+.++ +...... ..+..||++|+.||....... ..++|||++||++++|+++++.++
T Consensus 231 ~d~D~~l~~~~~~~-~~~~~~~----~~~~~~ekaK~~LS~~~~~~~---------~~~~itr~efe~l~~~l~~~~~~~ 296 (595)
T PRK01433 231 NDIDVVITQYLCNK-FDLPNSI----DTLQLAKKAKETLTYKDSFNN---------DNISINKQTLEQLILPLVERTINI 296 (595)
T ss_pred HHHHHHHHHHHHHh-cCCCCCH----HHHHHHHHHHHhcCCCccccc---------ceEEEcHHHHHHHHHHHHHHHHHH
Confidence 99999999999987 3222221 233469999999998765321 278999999999999999999999
Q ss_pred HHHHHHHcCCCccccceEEEEeCccchHHHHHHHHhhcCCcccCCCCccchhhhHHHHHhHHhcCCCCCCCceeeecccc
Q psy15216 2332 SSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIP 2411 (2602)
Q Consensus 2332 i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~aVa~GAa~~a~~~~~~~~~~~~~~~~d~~~ 2411 (2602)
++++|++++ ..+|+.|+||||+||||+|+++|+++||.++..+.||++|||+|||++|+.+++.. .++.+.|++|
T Consensus 297 i~~~L~~a~--~~~Id~ViLvGGssriP~v~~~l~~~f~~~~~~~~npdeaVA~GAAi~a~~l~~~~---~~~~l~Dv~p 371 (595)
T PRK01433 297 AQECLEQAG--NPNIDGVILVGGATRIPLIKDELYKAFKVDILSDIDPDKAVVWGAALQAENLIAPH---TNSLLIDVVP 371 (595)
T ss_pred HHHHHhhcC--cccCcEEEEECCcccChhHHHHHHHHhCCCceecCCchHHHHHHHHHHHHHhhCCc---cceEEEEecc
Confidence 999999998 56899999999999999999999999999888999999999999999999988653 3578999999
Q ss_pred ccceEEeeccEEEEEEecCCcCCCCcEEEEEeecccccceeEEEeecCcccccCCceeEEEEeeCCCCCCCCccEEEEEE
Q psy15216 2412 LSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTY 2491 (2602)
Q Consensus 2412 ~~~gi~~~~~~~~~ii~k~t~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~f 2491 (2602)
++||+++.+|.+.+||+||++||+++++.|+|..|+|+.+.|.||||++..+.+|..||+|.|+++||.|+|.++|+|+|
T Consensus 372 ~slgi~~~~g~~~~ii~rnt~iP~~~~~~f~t~~d~q~~v~i~v~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~i~vtf 451 (595)
T PRK01433 372 LSLGMELYGGIVEKIIMRNTPIPISVVKEFTTYADNQTGIQFHILQGEREMAADCRSLARFELKGLPPMKAGSIRAEVTF 451 (595)
T ss_pred cceEEEecCCEEEEEEECCCcccceeeEEeEeecCCCeEEEEEEEeccccccCCCcEEEEEEEcCCCCCCCCCccEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCccEEEEEEeecCCcEEEEEEecCCCCChHHHhcc
Q psy15216 2492 QVDADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKNG 2530 (2602)
Q Consensus 2492 ~id~~g~l~V~a~~~~tg~~~~~~i~~~~~l~~~ei~~~ 2530 (2602)
++|.||+|+|+|.++.||++..++|....+||++||++.
T Consensus 452 ~id~~Gil~V~a~~~~t~~~~~~~i~~~~~ls~~ei~~~ 490 (595)
T PRK01433 452 AIDADGILSVSAYEKISNTSHAIEVKPNHGIDKTEIDIM 490 (595)
T ss_pred EECCCCcEEEEEEEcCCCcEEEEEecCCCCCCHHHHHHH
Confidence 999999999999999999999999988888999999963
|
|
| >KOG0101|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-75 Score=731.57 Aligned_cols=499 Identities=38% Similarity=0.617 Sum_probs=462.1
Q ss_pred cCcceEEEEEcCcccEEEEEEECCeEEEEeCCCCCccccEEEEEecCCcEEecHHHHhhhccCCCCchhhhhhhcCCCCC
Q psy15216 2030 KNKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLK 2109 (2602)
Q Consensus 2030 ~~~~~vvGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~~~~~~vG~~A~~~~~~~p~~~~~~~K~~lg~~~~ 2109 (2602)
.....++|||||||||||+++.+++.+++.|++|++.+||+|+|.++ +.++|.+|+.+...+|.++++++||++|+.+.
T Consensus 4 ~~~~~aiGIdlGtT~s~v~v~~~~~v~iian~~g~rttPs~vaf~~~-e~~vg~~a~~qv~~np~ntv~~~krliGr~f~ 82 (620)
T KOG0101|consen 4 TPESVAIGIDLGTTYSCVGVYQSGKVEIIANDQGNRTTPSVVAFTDT-ERLIGDAAKNQVARNPDNTVFDAKRLIGRFFD 82 (620)
T ss_pred ccccceeeEeccCccceeeeEcCCcceeeeccccCccccceeeeccc-ccchhhhhhhhhhcCCcceeeehhhhcCcccc
Confidence 34567899999999999999999999999999999999999999754 67999999999999999999999999999998
Q ss_pred CCC----CCCCCeeeecC-CCceEEEec----CceeCHHHHHHHHHHHHHHHHHHhhccccceEEEeeCCCCCHHHHHHH
Q psy15216 2110 NIN----TNSFPYDFQNK-FGMLHIKTI----SGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFT 2180 (2602)
Q Consensus 2110 ~~~----~~~~~~~~~~~-~g~~~~~~~----~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~l 2180 (2602)
++. .+.|||.+..+ ++...+... ...++|+++++++|.++++.++.++|.++.++|+|||+||++.||+++
T Consensus 83 d~~v~~~~k~~pf~V~~~~~~~~~i~~~~~~~~~~f~peeiss~~L~klke~Ae~~Lg~~v~~aviTVPa~F~~~Qr~at 162 (620)
T KOG0101|consen 83 DPEVQSDMKLWPFKVISDQGGKPKIQVTYKGETKSFNPEEISSMVLTKLKETAEAYLGKTVKKAVVTVPAYFNDSQRAAT 162 (620)
T ss_pred chhhHhHhhcCCcccccccCCcceEEecccccceeeeeeeeeehhccccHHHHHHHhcCceeeEEEEecCCcCHHHHHHH
Confidence 864 36889998743 344544432 346899999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCceeEeechhHHHHHHhhhccCC-CCceEEEEEeCCceEEEEEEEEeCCEEEEEEEecCCCCchhHHHHHHH
Q psy15216 2181 KNAAKLAGLNVLRLLNEPTSAAIAYKLDKNI-FEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLF 2259 (2602)
Q Consensus 2181 ~~Aa~~AGl~~~~li~EP~AAAl~y~~~~~~-~~~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~ 2259 (2602)
++|+.+||++++++|+||+|||++|++.+.. ...+++|+|+||||||+|++.+.++.++|+++.||.++||.+||+.|+
T Consensus 163 ~~A~~iaGl~vlrii~EPtAaalAygl~k~~~~~~~VlI~DlGggtfdvs~l~i~gG~~~vkat~gd~~lGGedf~~~l~ 242 (620)
T KOG0101|consen 163 KDAALIAGLNVLRIINEPTAAALAYGLDKKVLGERNVLIFDLGGGTFDVSVLSLEGGIFEVKATAGDTHLGGEDFDNKLV 242 (620)
T ss_pred HHHHHhcCCceeeeecchHHHHHHhhccccccceeeEEEEEcCCCceeeeeEEeccchhhhhhhcccccccchhhhHHHH
Confidence 9999999999999999999999999977652 345899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCC------hhHHHHHHHHHHHHHHHhcccceEEEEEE-ecCCceEEEEcCHHHHHHHHHHHHHHHHHHH
Q psy15216 2260 SWIVKNAFLKKLS------YKDVNILMIKSREIKELLSYQSSVKLNVK-LSDKKIVNITIDMKQFFTITQHLVNRTILLS 2332 (2602)
Q Consensus 2260 ~~l~~~~~~~~~~------~~~~~~l~~~~e~~K~~ls~~~~~~~~i~-~~~~~~~~~~itr~~fe~l~~~~~~~~~~~i 2332 (2602)
.|+..+ |+++.. .....+|+.+||.+|+.||+...+++.++ +.++.++..++||.+||.++.+++.++.+++
T Consensus 243 ~h~~~e-f~~k~~~d~~~n~r~l~rLR~a~E~aKr~LS~~~~~~i~vdsL~~g~d~~~~itrarfe~l~~dlf~~~~~~v 321 (620)
T KOG0101|consen 243 NHFAAE-FKRKAGKDIGGNARALRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRSTLEPV 321 (620)
T ss_pred HHHHHH-HHHhhccccccchHHHHHHHHHHHHHHhhhcccccceeccchhhccccccceeehhhhhhhhhHHHHHHHHHH
Confidence 999987 555443 35678999999999999999999999998 8899999999999999999999999999999
Q ss_pred HHHHHHcCCCccccceEEEEeCccchHHHHHHHHhhcC-CcccCCCCccchhhhHHHHHhHHhcCCCCCC-Cceeeeccc
Q psy15216 2333 SKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFK-TTLLTSIDPDKAVVFGAAIQANFLSGNRGID-DNFLLLDVI 2410 (2602)
Q Consensus 2333 ~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~-~~~~~~~~p~~aVa~GAa~~a~~~~~~~~~~-~~~~~~d~~ 2410 (2602)
+++|+++++++.+|+.|+||||+||+|.+|+.++++|+ +.+..+.||+|+||+|||++|+.+++..... ..+.+.|+.
T Consensus 322 ~~~L~da~~dk~~i~~vvlVGGstriPk~~~ll~d~f~~k~~~~sinpDeavA~GAavqaa~~~g~~~~~~~~l~lid~~ 401 (620)
T KOG0101|consen 322 EKALKDAKLDKSDIDEVVLVGGSTRIPKVQKLLEDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSLNIQDLLLIDVA 401 (620)
T ss_pred HHHHHhhccCccCCceeEEecCcccchHHHHHHHHHhcccccccCCCHHHHHHhhHHHHhhhccCCccccccceeeeecc
Confidence 99999999999999999999999999999999999995 6678899999999999999999998864321 668999999
Q ss_pred cccceEEeeccEEEEEEecCCcCCCCcEEEEEeecccccceeEEEeecCcccccCCceeEEEEeeCCCCCCCCccEEEEE
Q psy15216 2411 PLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVT 2490 (2602)
Q Consensus 2411 ~~~~gi~~~~~~~~~ii~k~t~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~ 2490 (2602)
|.++||++.++.|.++|+|||++|+++++.|+|..|||+.+.|.|||||+...++|.++|.|.|.++||.|.|+++|+|+
T Consensus 402 pl~~gve~a~~~~~~~i~~~t~~P~~k~~~ftt~~dnQp~V~I~VyEger~~~kdn~~lg~feL~gippaprgvp~Ievt 481 (620)
T KOG0101|consen 402 PLSLGVETAGGVFTVLIPRNTSIPTKKTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVT 481 (620)
T ss_pred cccccccccCCcceeeeecccccceeeeeeeeeecCCCCceeEEEEeccccccccccccceeeecCCCccccCCcceeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCccEEEEEEeecCCcEEEEEEecC-CCCChHHHhcc
Q psy15216 2491 YQVDADGLLSIFAYEKISGKKKFITIKPF-YNMNLDEIKNG 2530 (2602)
Q Consensus 2491 f~id~~g~l~V~a~~~~tg~~~~~~i~~~-~~l~~~ei~~~ 2530 (2602)
|.+|.||+|+|+|.++.|||+..++|.+. ++||.++|+++
T Consensus 482 fdiD~ngiL~Vta~d~stgK~~~i~i~n~~grls~~~Ierm 522 (620)
T KOG0101|consen 482 FDIDANGILNVTAVDKSTGKENKITITNDKGRLSKEEIERM 522 (620)
T ss_pred EecCCCcEEEEeeccccCCccceEEEecccceeehhhhhhh
Confidence 99999999999999999999999998887 88999999974
|
|
| >PRK00290 dnaK molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-73 Score=772.69 Aligned_cols=492 Identities=44% Similarity=0.657 Sum_probs=453.2
Q ss_pred eEEEEEcCcccEEEEEEECCeEEEEeCCCCCccccEEEEEecCCcEEecHHHHhhhccCCCCchhhhhhhcCCCCCCC--
Q psy15216 2034 VSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNI-- 2111 (2602)
Q Consensus 2034 ~vvGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~~~~~~vG~~A~~~~~~~p~~~~~~~K~~lg~~~~~~-- 2111 (2602)
.+||||||||||+||++++|++++++|..|++.+||+|+|.+++++++|..|+.+...+|.++++++||+||++..+.
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~~~~~~~ 82 (627)
T PRK00290 3 KIIGIDLGTTNSCVAVMEGGEPKVIENAEGARTTPSVVAFTKDGERLVGQPAKRQAVTNPENTIFSIKRLMGRRDEEVQK 82 (627)
T ss_pred cEEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEeCCCCEEEcHHHHHhhhhCchhhHHHHHHHhCCCchHHHH
Confidence 589999999999999999999999999999999999999987788999999999999999999999999999983221
Q ss_pred CCCCCCeeee-cCCCceEEEecCceeCHHHHHHHHHHHHHHHHHHhhccccceEEEeeCCCCCHHHHHHHHHHHHHcCCc
Q psy15216 2112 NTNSFPYDFQ-NKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLN 2190 (2602)
Q Consensus 2112 ~~~~~~~~~~-~~~g~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~l~~Aa~~AGl~ 2190 (2602)
....+||++. ..++...+...+..++|+++++++|++|++.|+.+++.++.++|||||++|++.||++|++||+.|||+
T Consensus 83 ~~~~~p~~~~~~~~~~~~~~~~~~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~Aa~~AGl~ 162 (627)
T PRK00290 83 DIKLVPYKIVKADNGDAWVEIDGKKYTPQEISAMILQKLKKDAEDYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLE 162 (627)
T ss_pred HhhcCCeEEEEcCCCceEEEECCEEEcHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHHHHHHcCCc
Confidence 2356888875 345666666667789999999999999999999999999999999999999999999999999999999
Q ss_pred eeEeechhHHHHHHhhhccCCCCceEEEEEeCCceEEEEEEEEeCCEEEEEEEecCCCCchhHHHHHHHHHHHHHHhhhc
Q psy15216 2191 VLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKK 2270 (2602)
Q Consensus 2191 ~~~li~EP~AAAl~y~~~~~~~~~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~~ 2270 (2602)
+++||+||+|||++|++... .++++||||+||||||+|++++.++.++|+++.|+..+||.+||.+|++|+.++ |.++
T Consensus 163 v~~li~EptAAAl~y~~~~~-~~~~vlV~D~GggT~dvsv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~~~~~-~~~~ 240 (627)
T PRK00290 163 VLRIINEPTAAALAYGLDKK-GDEKILVYDLGGGTFDVSILEIGDGVFEVLSTNGDTHLGGDDFDQRIIDYLADE-FKKE 240 (627)
T ss_pred eEEEecchHHHHHHhhhccC-CCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCcChHHHHHHHHHHHHHH-HHHh
Confidence 99999999999999987663 467999999999999999999999999999999999999999999999999987 4333
Q ss_pred C------ChhHHHHHHHHHHHHHHHhcccceEEEEEEec-----CCceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy15216 2271 L------SYKDVNILMIKSREIKELLSYQSSVKLNVKLS-----DKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDA 2339 (2602)
Q Consensus 2271 ~------~~~~~~~l~~~~e~~K~~ls~~~~~~~~i~~~-----~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~~ 2339 (2602)
. ....+.+|+.+||++|+.||...++.+.++.. ++.++.++|||++|+++++|+++++..+++++|+++
T Consensus 241 ~~~~~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~~fe~l~~~l~~~~~~~i~~~l~~a 320 (627)
T PRK00290 241 NGIDLRKDKMALQRLKEAAEKAKIELSSAQQTEINLPFITADASGPKHLEIKLTRAKFEELTEDLVERTIEPCKQALKDA 320 (627)
T ss_pred hCCCcccCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeecccCCCCCeEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 2 23566789999999999999999888888732 235788999999999999999999999999999999
Q ss_pred CCCccccceEEEEeCccchHHHHHHHHhhcCCcccCCCCccchhhhHHHHHhHHhcCCCCCCCceeeeccccccceEEee
Q psy15216 2340 NLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETI 2419 (2602)
Q Consensus 2340 ~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~aVa~GAa~~a~~~~~~~~~~~~~~~~d~~~~~~gi~~~ 2419 (2602)
++.+.+|+.|+||||+||||+|+++|++.||.++....||++|||+|||++|+.+++.. +++.+.|++|++||++..
T Consensus 321 ~~~~~~id~ViLvGGssriP~v~~~l~~~fg~~~~~~~npdeava~GAa~~aa~l~~~~---~~~~~~d~~~~slgi~~~ 397 (627)
T PRK00290 321 GLSVSDIDEVILVGGSTRMPAVQELVKEFFGKEPNKGVNPDEVVAIGAAIQGGVLAGDV---KDVLLLDVTPLSLGIETL 397 (627)
T ss_pred CCChhhCcEEEEECCcCCChHHHHHHHHHhCCCCCcCcCChHHHHHhHHHHHHHhcCCc---cceeeeeccceEEEEEec
Confidence 99999999999999999999999999999999999999999999999999999998742 358899999999999999
Q ss_pred ccEEEEEEecCCcCCCCcEEEEEeecccccceeEEEeecCcccccCCceeEEEEeeCCCCCCCCccEEEEEEEEcCCccE
Q psy15216 2420 GGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADGLL 2499 (2602)
Q Consensus 2420 ~~~~~~ii~k~t~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~f~id~~g~l 2499 (2602)
++.+.+||+||+++|+++++.|++..|+|+.+.|.||||++....+|..||+|.|+++|+.++|.++|+|+|++|.||+|
T Consensus 398 ~~~~~~ii~~~t~~P~~~~~~f~~~~d~q~~~~i~v~~ge~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~f~~d~~gil 477 (627)
T PRK00290 398 GGVMTKLIERNTTIPTKKSQVFSTAADNQPAVTIHVLQGEREMAADNKSLGRFNLTGIPPAPRGVPQIEVTFDIDANGIV 477 (627)
T ss_pred CCeEEEEecCCCcCCccceEEEEecCCCcceEEEEEEEecccccCcCceEEEEEECCCCCCCCCCceEEEEEEECCCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999998899999999999999
Q ss_pred EEEEEeecCCcEEEEEEecCCCCChHHHhcc
Q psy15216 2500 SIFAYEKISGKKKFITIKPFYNMNLDEIKNG 2530 (2602)
Q Consensus 2500 ~V~a~~~~tg~~~~~~i~~~~~l~~~ei~~~ 2530 (2602)
+|++.+..+|++.++++.....||++||++.
T Consensus 478 ~v~a~~~~~~~~~~~~i~~~~~ls~e~i~~~ 508 (627)
T PRK00290 478 HVSAKDKGTGKEQSITITASSGLSDEEIERM 508 (627)
T ss_pred EEEEEEccCCceeEEEeccccccCHHHHHHH
Confidence 9999999999999999988888999999864
|
|
| >TIGR02350 prok_dnaK chaperone protein DnaK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-73 Score=772.76 Aligned_cols=493 Identities=44% Similarity=0.655 Sum_probs=457.0
Q ss_pred eEEEEEcCcccEEEEEEECCeEEEEeCCCCCccccEEEEEecCCcEEecHHHHhhhccCCCCchhhhhhhcCCCCCCC--
Q psy15216 2034 VSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNI-- 2111 (2602)
Q Consensus 2034 ~vvGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~~~~~~vG~~A~~~~~~~p~~~~~~~K~~lg~~~~~~-- 2111 (2602)
.+||||||||||+||++++|+++++.|..|++.+||+|+|.+++++++|..|+.+...+|.++++++||+||+++.+.
T Consensus 1 ~viGIDlGtt~s~va~~~~g~~~ii~n~~~~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~~~~~~~ 80 (595)
T TIGR02350 1 KIIGIDLGTTNSCVAVMEGGEPVVIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNPENTIYSIKRFMGRRFDEVTE 80 (595)
T ss_pred CEEEEEeCcccEEEEEEECCEEEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhhhhCchhhhHHHHHHhCCCchHHHH
Confidence 379999999999999999999999999999999999999987778999999999999999999999999999987442
Q ss_pred CCCCCCeeeecCCCceEEEecCceeCHHHHHHHHHHHHHHHHHHhhccccceEEEeeCCCCCHHHHHHHHHHHHHcCCce
Q psy15216 2112 NTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNV 2191 (2602)
Q Consensus 2112 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~l~~Aa~~AGl~~ 2191 (2602)
..+.+||.+..+++...+...+..++|+++++++|++|++.++.+++.++.++|||||++|++.||+++++||+.||+++
T Consensus 81 ~~~~~~~~v~~~~~~~~~~v~~~~~~peel~a~~L~~l~~~a~~~~~~~v~~~VItVPa~f~~~qR~a~~~Aa~~AGl~v 160 (595)
T TIGR02350 81 EAKRVPYKVVGDGGDVRVKVDGKEYTPQEISAMILQKLKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEV 160 (595)
T ss_pred HhhcCCeeEEcCCCceEEEECCEEecHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHcCCce
Confidence 23568888877788888887788899999999999999999999999999999999999999999999999999999999
Q ss_pred eEeechhHHHHHHhhhccCCCCceEEEEEeCCceEEEEEEEEeCCEEEEEEEecCCCCchhHHHHHHHHHHHHHHhhhcC
Q psy15216 2192 LRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKL 2271 (2602)
Q Consensus 2192 ~~li~EP~AAAl~y~~~~~~~~~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~~~ 2271 (2602)
++||+||+|||++|+......++++||||+||||||+|++++.++.++|+++.|+..+||.+||+.|++|+.+++ .+++
T Consensus 161 ~~li~EptAAAl~y~~~~~~~~~~vlV~D~Gggt~dvsv~~~~~~~~~v~~~~gd~~lGG~d~D~~l~~~~~~~~-~~~~ 239 (595)
T TIGR02350 161 LRIINEPTAAALAYGLDKSKKDEKILVFDLGGGTFDVSILEIGDGVFEVLSTAGDTHLGGDDFDQRIIDWLADEF-KKEE 239 (595)
T ss_pred EEEecchHHHHHHHhhcccCCCcEEEEEECCCCeEEEEEEEecCCeEEEEEecCCcccCchhHHHHHHHHHHHHH-HHhh
Confidence 999999999999998876455789999999999999999999999999999999999999999999999999874 3322
Q ss_pred ------ChhHHHHHHHHHHHHHHHhcccceEEEEEEec-----CCceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy15216 2272 ------SYKDVNILMIKSREIKELLSYQSSVKLNVKLS-----DKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDAN 2340 (2602)
Q Consensus 2272 ------~~~~~~~l~~~~e~~K~~ls~~~~~~~~i~~~-----~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~~~ 2340 (2602)
......+|+.+||++|+.||...++.+.++.. ++.++.++|||++|+++++|+++++.++++++|++++
T Consensus 240 ~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~l~~~~~~~i~~~l~~a~ 319 (595)
T TIGR02350 240 GIDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFITADASGPKHLEMTLTRAKFEELTADLVERTKEPVRQALKDAG 319 (595)
T ss_pred CCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEeeecccCCCCCeeEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 23456789999999999999998888887732 2356889999999999999999999999999999999
Q ss_pred CCccccceEEEEeCccchHHHHHHHHhhcCCcccCCCCccchhhhHHHHHhHHhcCCCCCCCceeeeccccccceEEeec
Q psy15216 2341 LTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIG 2420 (2602)
Q Consensus 2341 ~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~aVa~GAa~~a~~~~~~~~~~~~~~~~d~~~~~~gi~~~~ 2420 (2602)
+++.+|+.|+||||+||||+|++.|++.||.++....||++|||+|||++|+.+++. + .++.+.|++|++||++..+
T Consensus 320 ~~~~~i~~V~LvGGssriP~v~~~i~~~f~~~~~~~~~pdeava~GAa~~aa~l~~~--~-~~~~~~d~~~~~igi~~~~ 396 (595)
T TIGR02350 320 LSASDIDEVILVGGSTRIPAVQELVKDFFGKEPNKSVNPDEVVAIGAAIQGGVLKGD--V-KDVLLLDVTPLSLGIETLG 396 (595)
T ss_pred CCHhHCcEEEEECCcccChHHHHHHHHHhCCcccCCcCcHHHHHHHHHHHHHHhcCC--c-ccceeeecccceeEEEecC
Confidence 999999999999999999999999999999888999999999999999999999875 2 3588999999999999999
Q ss_pred cEEEEEEecCCcCCCCcEEEEEeecccccceeEEEeecCcccccCCceeEEEEeeCCCCCCCCccEEEEEEEEcCCccEE
Q psy15216 2421 GLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADGLLS 2500 (2602)
Q Consensus 2421 ~~~~~ii~k~t~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~f~id~~g~l~ 2500 (2602)
+.+.+||+||+++|+++++.|++..|+|+.+.|.||||++..+.+|..||++.|+++++.++|.++|+|+|++|.||+|+
T Consensus 397 ~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~v~i~i~~ge~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~f~~d~~G~l~ 476 (595)
T TIGR02350 397 GVMTKLIERNTTIPTKKSQVFSTAADNQPAVDIHVLQGERPMAADNKSLGRFELTGIPPAPRGVPQIEVTFDIDANGILH 476 (595)
T ss_pred CceEEEEeCCCcCCccceEeeeccCCCCcEEEEEEEeecccccccCcEeEEEEECCCCCCCCCCceEEEEEEEcCCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999989999999999999999
Q ss_pred EEEEeecCCcEEEEEEecCCCCChHHHhcc
Q psy15216 2501 IFAYEKISGKKKFITIKPFYNMNLDEIKNG 2530 (2602)
Q Consensus 2501 V~a~~~~tg~~~~~~i~~~~~l~~~ei~~~ 2530 (2602)
|++.+..+|++.++++....+||++|+++.
T Consensus 477 v~~~~~~~~~~~~~~i~~~~~ls~~~~~~~ 506 (595)
T TIGR02350 477 VSAKDKGTGKEQSITITASSGLSEEEIERM 506 (595)
T ss_pred EEEEEccCCceEEEEeccccccCHHHHHHH
Confidence 999999999999999988888999999864
|
Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved. |
| >PTZ00009 heat shock 70 kDa protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-73 Score=767.25 Aligned_cols=496 Identities=38% Similarity=0.599 Sum_probs=449.8
Q ss_pred ceEEEEEcCcccEEEEEEECCeEEEEeCCCCCccccEEEEEecCCcEEecHHHHhhhccCCCCchhhhhhhcCCCCCCCC
Q psy15216 2033 CVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNIN 2112 (2602)
Q Consensus 2033 ~~vvGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~~~~~~vG~~A~~~~~~~p~~~~~~~K~~lg~~~~~~~ 2112 (2602)
..+||||||||||+||++++|++++++|..|+|.+||+|+|. ++++++|+.|+.+..++|.++++++||+||+++.+..
T Consensus 4 ~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~-~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~ 82 (653)
T PTZ00009 4 GPAIGIDLGTTYSCVGVWKNENVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVARNPENTVFDAKRLIGRKFDDSV 82 (653)
T ss_pred ccEEEEEeCcccEEEEEEeCCceEEEECCCCCccCCcEEEEC-CCCEEEcHHHHHhhhhCcccEEhhhHHHhCCCCCchh
Confidence 348999999999999999999999999999999999999996 4567999999999999999999999999999987642
Q ss_pred ----CCCCCeeee-cCCCceEEE--ec--CceeCHHHHHHHHHHHHHHHHHHhhccccceEEEeeCCCCCHHHHHHHHHH
Q psy15216 2113 ----TNSFPYDFQ-NKFGMLHIK--TI--SGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNA 2183 (2602)
Q Consensus 2113 ----~~~~~~~~~-~~~g~~~~~--~~--~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~l~~A 2183 (2602)
.+.+||.+. ..++...+. .. ...++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~A 162 (653)
T PTZ00009 83 VQSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEEISSMVLQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKDA 162 (653)
T ss_pred HhhhhhcCceEEEEcCCCceEEEEEeCCceEEECHHHHHHHHHHHHHHHHHHHhCCCcceeEEEeCCCCCHHHHHHHHHH
Confidence 346788764 334433332 22 357999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceeEeechhHHHHHHhhhccCC-CCceEEEEEeCCceEEEEEEEEeCCEEEEEEEecCCCCchhHHHHHHHHHH
Q psy15216 2184 AKLAGLNVLRLLNEPTSAAIAYKLDKNI-FEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWI 2262 (2602)
Q Consensus 2184 a~~AGl~~~~li~EP~AAAl~y~~~~~~-~~~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l 2262 (2602)
|+.|||++++||+||+|||++|++.... .++++||||+||||||+||+++.++.++|+++.|+.++||.+||.+|++|+
T Consensus 163 a~~AGl~v~~li~EptAAAl~y~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~a~~gd~~lGG~d~D~~l~~~~ 242 (653)
T PTZ00009 163 GTIAGLNVLRIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLVEFC 242 (653)
T ss_pred HHHcCCceeEEecchHHHHHHHhhhccCCCCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCCChHHHHHHHHHHH
Confidence 9999999999999999999999876533 357899999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcC------ChhHHHHHHHHHHHHHHHhcccceEEEEEE-ecCCceEEEEcCHHHHHHHHHHHHHHHHHHHHHH
Q psy15216 2263 VKNAFLKKL------SYKDVNILMIKSREIKELLSYQSSVKLNVK-LSDKKIVNITIDMKQFFTITQHLVNRTILLSSKA 2335 (2602)
Q Consensus 2263 ~~~~~~~~~------~~~~~~~l~~~~e~~K~~ls~~~~~~~~i~-~~~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~ 2335 (2602)
.+++..+.. ..+.+.+|+.+||++|+.||.+.++.+.++ +.++.+++++|||++||++++|+++++..+++++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~L~~~aEkaK~~LS~~~~~~i~i~~~~~~~d~~~~itR~~fe~l~~~l~~~~~~~i~~~ 322 (653)
T PTZ00009 243 VQDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSSTQATIEIDSLFEGIDYNVTISRARFEELCGDYFRNTLQPVEKV 322 (653)
T ss_pred HHHHHHhccCCCCccCHHHHHHHHHHHHHHHHhCCCCceEEEEEEeccCCceEEEEECHHHHHHHHHHHHHHHHHHHHHH
Confidence 987432211 235677899999999999999999999987 5677889999999999999999999999999999
Q ss_pred HHHcCCCccccceEEEEeCccchHHHHHHHHhhcC-CcccCCCCccchhhhHHHHHhHHhcCCC--CCCCceeeeccccc
Q psy15216 2336 LMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFK-TTLLTSIDPDKAVVFGAAIQANFLSGNR--GIDDNFLLLDVIPL 2412 (2602)
Q Consensus 2336 l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~-~~~~~~~~p~~aVa~GAa~~a~~~~~~~--~~~~~~~~~d~~~~ 2412 (2602)
|+++++++.+|+.|+||||+||||.||++|+++|+ .++....||++|||+|||++|+++++.. ++ .++.+.|++|+
T Consensus 323 L~~a~~~~~~i~~ViLvGGssriP~v~~~i~~~f~~~~~~~~~npdeaVA~GAa~~aa~ls~~~~~~~-~~~~~~dv~p~ 401 (653)
T PTZ00009 323 LKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFNGKEPCKSINPDEAVAYGAAVQAAILTGEQSSQV-QDLLLLDVTPL 401 (653)
T ss_pred HHHcCCCHHHCcEEEEECCCCCChhHHHHHHHHhCCCCCCCCCCcchHHhhhhhhhHHHhcCCccccc-cceEEEeeccc
Confidence 99999999999999999999999999999999996 5778899999999999999999998753 23 34889999999
Q ss_pred cceEEeeccEEEEEEecCCcCCCCcEEEEEeecccccceeEEEeecCcccccCCceeEEEEeeCCCCCCCCccEEEEEEE
Q psy15216 2413 SLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQ 2492 (2602)
Q Consensus 2413 ~~gi~~~~~~~~~ii~k~t~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~f~ 2492 (2602)
+||++..++.+.+||+||++||+++++.|++..|+|+.+.|.||||++...++|..||+|.++++|+.++|.++|+|+|+
T Consensus 402 slgi~~~~~~~~~ii~~~t~iP~~~~~~f~t~~d~q~~~~i~i~ege~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~ 481 (653)
T PTZ00009 402 SLGLETAGGVMTKLIERNTTIPTKKSQIFTTYADNQPGVLIQVFEGERAMTKDNNLLGKFHLDGIPPAPRGVPQIEVTFD 481 (653)
T ss_pred ccCccccCCceEEEEeCCCcCCccceeEeEeecCCCceEEEEEEecccccCCCCceEEEEEEcCCCCCCCCCceEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999889999999
Q ss_pred EcCCccEEEEEEeecCCcEEEEEEecC-CCCChHHHhcc
Q psy15216 2493 VDADGLLSIFAYEKISGKKKFITIKPF-YNMNLDEIKNG 2530 (2602)
Q Consensus 2493 id~~g~l~V~a~~~~tg~~~~~~i~~~-~~l~~~ei~~~ 2530 (2602)
+|.||+|+|++.++.||++..+++... ..|+++|+++.
T Consensus 482 id~~Gil~v~~~~~~t~~~~~~~i~~~~~~ls~~~i~~~ 520 (653)
T PTZ00009 482 IDANGILNVSAEDKSTGKSNKITITNDKGRLSKADIDRM 520 (653)
T ss_pred ECCCCeEEEEEecccCCceeeEEEeeccccccHHHHHHH
Confidence 999999999999999999999988755 67999999864
|
|
| >CHL00094 dnaK heat shock protein 70 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-73 Score=761.30 Aligned_cols=493 Identities=44% Similarity=0.669 Sum_probs=451.4
Q ss_pred ceEEEEEcCcccEEEEEEECCeEEEEeCCCCCccccEEEEEecCCcEEecHHHHhhhccCCCCchhhhhhhcCCCCCCCC
Q psy15216 2033 CVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNIN 2112 (2602)
Q Consensus 2033 ~~vvGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~~~~~~vG~~A~~~~~~~p~~~~~~~K~~lg~~~~~~~ 2112 (2602)
..+||||||||||+||++++|+|++++|..|++.+||+|+|.+++++++|..|+.+...+|.++++++||+||+++.+..
T Consensus 2 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~~~~ 81 (621)
T CHL00094 2 GKVVGIDLGTTNSVVAVMEGGKPTVIPNAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVINPENTFYSVKRFIGRKFSEIS 81 (621)
T ss_pred CceEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEcCCCCEEECHHHHHhHHhCccceehhhHHhcCCChHHHH
Confidence 36899999999999999999999999999999999999999877889999999999999999999999999999875532
Q ss_pred --CCCCCeeeec-CCCceEEEe--cCceeCHHHHHHHHHHHHHHHHHHhhccccceEEEeeCCCCCHHHHHHHHHHHHHc
Q psy15216 2113 --TNSFPYDFQN-KFGMLHIKT--ISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLA 2187 (2602)
Q Consensus 2113 --~~~~~~~~~~-~~g~~~~~~--~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~l~~Aa~~A 2187 (2602)
...+||.+.. .++.+.+.. .+..++|+++++++|++|++.|+.+++.++.++|||||++|++.||+++++||+.|
T Consensus 82 ~~~~~~~~~v~~~~~g~i~~~~~~~~~~~s~eei~a~iL~~l~~~ae~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa~~A 161 (621)
T CHL00094 82 EEAKQVSYKVKTDSNGNIKIECPALNKDFSPEEISAQVLRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDAGKIA 161 (621)
T ss_pred hhhhcCCeEEEECCCCCEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHc
Confidence 3457888753 345555543 35578999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEeechhHHHHHHhhhccCCCCceEEEEEeCCceEEEEEEEEeCCEEEEEEEecCCCCchhHHHHHHHHHHHHHHh
Q psy15216 2188 GLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAF 2267 (2602)
Q Consensus 2188 Gl~~~~li~EP~AAAl~y~~~~~~~~~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~ 2267 (2602)
||++++||+||+|||++|+.... .++.+||||+||||||+||+++.++.++|+++.|+..+||++||++|++|+.++ |
T Consensus 162 Gl~v~~li~EptAAAlay~~~~~-~~~~vlV~DlGgGT~DvSv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~~~~~-~ 239 (621)
T CHL00094 162 GLEVLRIINEPTAASLAYGLDKK-NNETILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKKIVNWLIKE-F 239 (621)
T ss_pred CCceEEEeccHHHHHHHhccccC-CCCEEEEEEcCCCeEEEEEEEEcCCEEEEEEEecCCCcChHHHHHHHHHHHHHH-H
Confidence 99999999999999999987653 457899999999999999999999999999999999999999999999999987 4
Q ss_pred hhcC------ChhHHHHHHHHHHHHHHHhcccceEEEEEEec-----CCceEEEEcCHHHHHHHHHHHHHHHHHHHHHHH
Q psy15216 2268 LKKL------SYKDVNILMIKSREIKELLSYQSSVKLNVKLS-----DKKIVNITIDMKQFFTITQHLVNRTILLSSKAL 2336 (2602)
Q Consensus 2268 ~~~~------~~~~~~~l~~~~e~~K~~ls~~~~~~~~i~~~-----~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~l 2336 (2602)
.+++ ..+.+.+|+.+||++|+.||...++.+.++.. ++.++..+|||++||++++++++++..+|+++|
T Consensus 240 ~~~~~~~~~~~~~~~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~~~~~~i~~~L 319 (621)
T CHL00094 240 KKKEGIDLSKDRQALQRLTEAAEKAKIELSNLTQTEINLPFITATQTGPKHIEKTLTRAKFEELCSDLINRCRIPVENAL 319 (621)
T ss_pred HHHhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeecccCCCCCeeEEEEEcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4332 23466789999999999999998888888732 235688899999999999999999999999999
Q ss_pred HHcCCCccccceEEEEeCccchHHHHHHHHhhcCCcccCCCCccchhhhHHHHHhHHhcCCCCCCCceeeeccccccceE
Q psy15216 2337 MDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGI 2416 (2602)
Q Consensus 2337 ~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~aVa~GAa~~a~~~~~~~~~~~~~~~~d~~~~~~gi 2416 (2602)
+++++.+.+|+.|+||||+||||.|++.|+++||.++....||++|||+|||++|+.+++.. .++.+.|++|++||+
T Consensus 320 ~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~~pdeava~GAA~~aa~ls~~~---~~~~~~d~~~~~lgi 396 (621)
T CHL00094 320 KDAKLDKSDIDEVVLVGGSTRIPAIQELVKKLLGKKPNQSVNPDEVVAIGAAVQAGVLAGEV---KDILLLDVTPLSLGV 396 (621)
T ss_pred HHcCCChhhCcEEEEECCccCChHHHHHHHHHhCCCcCcCCCchhHHHhhhHHHHHHhcCCc---cceeeeeeeceeeee
Confidence 99999999999999999999999999999999999888999999999999999999998742 358899999999999
Q ss_pred EeeccEEEEEEecCCcCCCCcEEEEEeecccccceeEEEeecCcccccCCceeEEEEeeCCCCCCCCccEEEEEEEEcCC
Q psy15216 2417 ETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDAD 2496 (2602)
Q Consensus 2417 ~~~~~~~~~ii~k~t~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~f~id~~ 2496 (2602)
+..++.+.+||+||++||+++++.|++..|+|+.+.|.||||++..+.+|..||+|.|+++|+.++|.++|+|+|++|.|
T Consensus 397 ~~~~~~~~~ii~~~t~iP~~~~~~~~~~~~~q~~v~i~i~~ge~~~~~~n~~lg~~~i~~~~~~~~g~~~i~v~f~id~~ 476 (621)
T CHL00094 397 ETLGGVMTKIIPRNTTIPTKKSEVFSTAVDNQTNVEIHVLQGERELAKDNKSLGTFRLDGIPPAPRGVPQIEVTFDIDAN 476 (621)
T ss_pred eccCCEEEEEEeCCCccceeeeEEEEeccCCCcEEEEEEEeeccccCCCCCEEEEEEEeCCCCCCCCCCcEEEEEEECCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998899999999999
Q ss_pred ccEEEEEEeecCCcEEEEEEecCCCCChHHHhcc
Q psy15216 2497 GLLSIFAYEKISGKKKFITIKPFYNMNLDEIKNG 2530 (2602)
Q Consensus 2497 g~l~V~a~~~~tg~~~~~~i~~~~~l~~~ei~~~ 2530 (2602)
|+|+|++.++.||++..+.+....+||++||++.
T Consensus 477 Gil~v~~~~~~t~~~~~~~i~~~~~ls~~~i~~~ 510 (621)
T CHL00094 477 GILSVTAKDKGTGKEQSITIQGASTLPKDEVERM 510 (621)
T ss_pred CeEEEEEeeccCCceeeeeeccchhccHHHHHHH
Confidence 9999999999999999999987778999999865
|
|
| >COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-73 Score=742.01 Aligned_cols=481 Identities=46% Similarity=0.647 Sum_probs=447.6
Q ss_pred cceEEEEEcCcccEEEEEEECC-eEEEEeCCCCCccccEEEEEecCCcEEecHHHHhhhccCCCCchhhhhhhcCCCCCC
Q psy15216 2032 KCVSIGIDFGTTNSLVAIVRNN-IPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKN 2110 (2602)
Q Consensus 2032 ~~~vvGIDfGTt~s~va~~~~g-~~~ii~~~~g~~~~PS~v~~~~~~~~~vG~~A~~~~~~~p~~~~~~~K~~lg~~~~~ 2110 (2602)
.+.+||||||||||+||+++++ .+.++.|..|.+.+||+|+|.+++++++|..|+.+...+|.++++.+||++|+....
T Consensus 4 ~~~~iGIDlGTTNS~vA~~~~~~~~~vi~n~~g~r~~PSvv~f~~~~~~~vG~~A~~q~~~~p~~t~~~~kr~~G~~~~~ 83 (579)
T COG0443 4 AKKAIGIDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNPENTIFSIKRKIGRGSNG 83 (579)
T ss_pred CceEEEEEcCCCcEEEEEEeCCCCceEecCCCCCcccceEEEECCCCCEEecHHHHHHhhhCCcceEEEEehhcCCCCCC
Confidence 4578999999999999999988 799999999999999999998887899999999999999999999999999987211
Q ss_pred CCCCCCCeeeecCCCceEEEecCceeCHHHHHHHHHHHHHHHHHHhhccccceEEEeeCCCCCHHHHHHHHHHHHHcCCc
Q psy15216 2111 INTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLN 2190 (2602)
Q Consensus 2111 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~l~~Aa~~AGl~ 2190 (2602)
....+...++.++|+++++++|++||+.++.+++.++.++||||||||++.||+++++|+++|||+
T Consensus 84 --------------~~~~~~~~~~~~~~eeisa~~L~~lk~~ae~~lg~~v~~~VItVPayF~d~qR~at~~A~~iaGl~ 149 (579)
T COG0443 84 --------------LKISVEVDGKKYTPEEISAMILTKLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATKDAARIAGLN 149 (579)
T ss_pred --------------CcceeeeCCeeeCHHHHHHHHHHHHHHHHHHhhCCCcceEEEEeCCCCCHHHHHHHHHHHHHcCCC
Confidence 001223334689999999999999999999999999999999999999999999999999999999
Q ss_pred eeEeechhHHHHHHhhhccCCCCceEEEEEeCCceEEEEEEEEeCCEEEEEEEecCCCCchhHHHHHHHHHHHHHHhhhc
Q psy15216 2191 VLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKK 2270 (2602)
Q Consensus 2191 ~~~li~EP~AAAl~y~~~~~~~~~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~~ 2270 (2602)
++++++||+|||++|++... .+++|+|||+||||||+|++++.++.++|+++.||.++||+|||.+|++|+..++..+.
T Consensus 150 vlrlinEPtAAAlayg~~~~-~~~~vlV~DlGGGTfDvSll~~~~g~~ev~at~gd~~LGGddfD~~l~~~~~~~f~~~~ 228 (579)
T COG0443 150 VLRLINEPTAAALAYGLDKG-KEKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDNALIDYLVMEFKGKG 228 (579)
T ss_pred eEEEecchHHHHHHhHhccC-CCcEEEEEEcCCCCEEEEEEEEcCCEEEEeecCCCcccCchhHHHHHHHHHHHHhhccC
Confidence 99999999999999999877 67899999999999999999999999999999999999999999999999999854443
Q ss_pred C-----ChhHHHHHHHHHHHHHHHhcccceEEEEEEe-cCCceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Q psy15216 2271 L-----SYKDVNILMIKSREIKELLSYQSSVKLNVKL-SDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIK 2344 (2602)
Q Consensus 2271 ~-----~~~~~~~l~~~~e~~K~~ls~~~~~~~~i~~-~~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~~~~~~~ 2344 (2602)
. .....++|+.+||++|+.||...++.+.+++ .++.++..+|||++||+++.+++.++...+.+++++++++..
T Consensus 229 ~~d~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~~~~~~~~~~~~~~ltR~~~E~l~~dll~r~~~~~~~al~~a~l~~~ 308 (579)
T COG0443 229 GIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGDIDLLKELTRAKFEELILDLLERTIEPVEQALKDAGLEKS 308 (579)
T ss_pred CccccccHHHHHHHHHHHHHHHHHcccccccccchhhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCChh
Confidence 1 2235678999999999999999999999874 344567889999999999999999999999999999999999
Q ss_pred ccceEEEEeCccchHHHHHHHHhhcCCcccCCCCccchhhhHHHHHhHHhcCCCCCCCceeeeccccccceEEeeccEEE
Q psy15216 2345 DINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVE 2424 (2602)
Q Consensus 2345 ~i~~V~LvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~aVa~GAa~~a~~~~~~~~~~~~~~~~d~~~~~~gi~~~~~~~~ 2424 (2602)
+|+.|+||||++|||.|++.++++|+.++...+||+++||.|||++|+.+++... ++.+.|++|+++|++..++.+.
T Consensus 309 ~I~~VilvGGstriP~V~~~v~~~f~~~~~~~inpdeava~GAa~qa~~l~~~~~---d~ll~Dv~plslgie~~~~~~~ 385 (579)
T COG0443 309 DIDLVILVGGSTRIPAVQELVKEFFGKEPEKSINPDEAVALGAAIQAAVLSGEVP---DVLLLDVIPLSLGIETLGGVRT 385 (579)
T ss_pred hCceEEEccceeccHHHHHHHHHHhCccccccCCccHHHHHHHHHHHHhhcCccc---CceEEeeeeeccccccCcchhh
Confidence 9999999999999999999999999999999999999999999999999998653 6889999999999999999999
Q ss_pred EEEecCCcCCCCcEEEEEeecccccceeEEEeecCcccccCCceeEEEEeeCCCCCCCCccEEEEEEEEcCCccEEEEEE
Q psy15216 2425 KIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAY 2504 (2602)
Q Consensus 2425 ~ii~k~t~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~f~id~~g~l~V~a~ 2504 (2602)
++|++|+++|.++...|++..|+|+.+.++++||+.....+|..+|.|.+.++||.|.|.++|+|+|.+|.||+++|+++
T Consensus 386 ~ii~rn~~iP~~~~~~f~t~~d~q~~~~i~v~qge~~~~~~~~~lg~f~l~~i~~~~~g~~~i~v~f~iD~~gi~~v~a~ 465 (579)
T COG0443 386 PIIERNTTIPVKKSQEFSTAADGQTAVAIHVFQGEREMAADNKSLGRFELDGIPPAPRGVPQIEVTFDIDANGILNVTAK 465 (579)
T ss_pred hHHhcCCCCCcccceEEEeecCCCceeEEEEEecchhhcccCceeEEEECCCCCCCCCCCCceEEEeccCCCcceEeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCcEEEEEEecCCCCChHHHhcc
Q psy15216 2505 EKISGKKKFITIKPFYNMNLDEIKNG 2530 (2602)
Q Consensus 2505 ~~~tg~~~~~~i~~~~~l~~~ei~~~ 2530 (2602)
++.+|++..++|....+|++++|+..
T Consensus 466 ~~~~~k~~~i~i~~~~~ls~~~i~~~ 491 (579)
T COG0443 466 DLGTGKEQSITIKASSGLSDEEIERM 491 (579)
T ss_pred cccCCceEEEEEecCCCCCHHHHHHH
Confidence 99999999999999977999999953
|
|
| >PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-69 Score=740.43 Aligned_cols=495 Identities=39% Similarity=0.607 Sum_probs=446.5
Q ss_pred EEEEEcCcccEEEEEEECCeeEEEeCCCCCccccEEEEEecCCcEEEcHHHHhhhccCCCCchhhhhhhhCCCCCCC--C
Q psy15216 639 SIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNI--N 716 (2602)
Q Consensus 639 vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~v~~~~~~~~~vG~~A~~~~~~~p~~~~~~~K~~lg~~~~~~--~ 716 (2602)
|||||||||||+||+++++.++++.|..|++.+||+|+|.++ ++++|..|...+.++|.++++++||+||+++++. +
T Consensus 1 viGID~Gt~~~~va~~~~~~~~ii~~~~~~~~~ps~v~~~~~-~~~~G~~a~~~~~~~~~~~~~~~k~liG~~~~~~~~~ 79 (602)
T PF00012_consen 1 VIGIDLGTTNSKVAVFKNGKPEIILNEEGKRKTPSVVSFSDN-ERLVGEDAKSQMIRNPKNTIYNLKRLIGRKFDDPDVQ 79 (602)
T ss_dssp EEEEEE-SSEEEEEEEETTEEEEE--TTS-SSEESEEEEESS-CEEETHHHHHTTTTSGGGEEESGGGTTTSBTTSHHHH
T ss_pred CEEEEeccCCEEEEEEEeccccccccccccccccceeeEeee-cccCCcchhhhcccccccccccccccccccccccccc
Confidence 699999999999999999999999999999999999999877 7899999999999999999999999999988762 2
Q ss_pred --CCCCCeeee-cCCCceEEEEe--C--ceeCHHHHHHHHHHHHHHHHHHhhcCccceEEEEEcCCCCHHHHHHHHHHHH
Q psy15216 717 --TNSFPYDFQ-NKFGMLHIKTI--S--GIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAK 789 (2602)
Q Consensus 717 --~~~~~~~~~-~~~~~~~~~~~--~--~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~~~~Aa~ 789 (2602)
...+||.+. ..+|...+... + ..++|+++++++|++|++.++.+++.++.++|||||++|++.||++|++||+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~~~~Aa~ 159 (602)
T PF00012_consen 80 KEKKKFPYKVVEDPDGKVYFEVDYDGKSKTYSPEELSAMILKYLKEMAEKYLGEKVTDVVITVPAYFTDEQRQALRDAAE 159 (602)
T ss_dssp HHHTTSSSEEEEETTTEEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEE-TT--HHHHHHHHHHHH
T ss_pred hhhhcccccccccccccccccccccccceeeeeecccccchhhhcccchhhcccccccceeeechhhhhhhhhccccccc
Confidence 236788887 44677766654 3 3899999999999999999999999999999999999999999999999999
Q ss_pred HcCCceEEEechhHHHHHHhhhccCcccceEEEEEeCCceEEEEEEEEECCEEEEEEEecCCCCcchHHHHHHHHHHHHH
Q psy15216 790 LAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKN 869 (2602)
Q Consensus 790 ~AGl~~~~li~EPtAAAl~y~~~~~~~~~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~ 869 (2602)
.|||++++||+||+|||++|++.....++++||||+||||||+|++++.++.++++++.++..+||.+||.+|++|+.++
T Consensus 160 ~agl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~Gggt~dvs~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~~~~~ 239 (602)
T PF00012_consen 160 LAGLNVLRLINEPTAAALAYGLERSDKGKTVLVVDFGGGTFDVSVVEFSNGQFEVLATAGDNNLGGRDFDEALAEYLLEK 239 (602)
T ss_dssp HTT-EEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEEESSEEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHHH
T ss_pred ccccccceeecccccccccccccccccccceeccccccceEeeeehhcccccccccccccccccccceecceeecccccc
Confidence 99999999999999999999988776678999999999999999999999999999999999999999999999999999
Q ss_pred Hhhcc-----CCHHHHHHHHHHHHHHHHHccc--ccceEEEEE-ecC-CceEEEEeCHHHHHHHHHHHHHHHHHHHHHHH
Q psy15216 870 AFLKK-----LSYKDVNILMIKSREIKELLSY--QSSVKLNVK-LSD-KKIVNITIDMKQFFTITQHLVNRTILLSSKAL 940 (2602)
Q Consensus 870 ~~~~~-----~~~~~~~~l~~~~e~~K~~LS~--~~~~~~~i~-~~~-~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~l 940 (2602)
|..+. .+++.+.+|+.+||++|+.||. ..+..+.++ +.+ |.++.++|||++|+++++|+++++..+++++|
T Consensus 240 ~~~~~~~d~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~l 319 (602)
T PF00012_consen 240 FKKKYKIDLRENPRAMARLLEAAEKAKEQLSSNDNTEITISIESLYDDGEDFSITITREEFEELCEPLLERIIEPIEKAL 319 (602)
T ss_dssp HHHHHSS-GTCSHHHHHHHHHHHHHHHHHTTTSSSSEEEEEEEEEETTTEEEEEEEEHHHHHHHTHHHHHHTHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeccccccccccccccccccc
Confidence 87653 5778999999999999999999 455555555 444 78999999999999999999999999999999
Q ss_pred HHcCCCccccceEEEecCccchHHHHHHHHhhccCcccCcCCcchHhHHHHHHHhHHhcCCCCCCCceeeeccccccceE
Q psy15216 941 MDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGI 1020 (2602)
Q Consensus 941 ~~a~~~~~~i~~V~LvGG~sr~P~v~~~l~~~f~~~~~~~~~p~~aVa~GAa~~a~~l~~~~~~~~~~~~~dv~~~~~gi 1020 (2602)
++++++..+|++|+||||+||+|+||+.|++.|+..+..+.||++|||+|||++|+.+++.++ ..++.+.|++|++||+
T Consensus 320 ~~~~~~~~~i~~V~lvGG~sr~p~v~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~~~~~~~-~~~~~~~d~~~~~~~i 398 (602)
T PF00012_consen 320 KDAGLKKEDIDSVLLVGGSSRIPYVQEALKELFGKKISKSVNPDEAVARGAALYAAILSGSFR-VKDIKIIDVTPFSIGI 398 (602)
T ss_dssp HHTT--GGGESEEEEESGGGGSHHHHHHHHHHTTSEEB-SS-TTTHHHHHHHHHHHHHHTSCS-STSSCESEBESSEEEE
T ss_pred ccccccccccceeEEecCcccchhhhhhhhhccccccccccccccccccccccchhhhccccc-cccccccccccccccc
Confidence 999999999999999999999999999999999988889999999999999999999998654 3467899999999999
Q ss_pred eeeccEEEEEEecCCCCCCCcEEEEEeccccccceeeeEeecCccccccCceeeeeEecCCCCCCCCccEEEEEEEECCC
Q psy15216 1021 ETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDAD 1100 (2602)
Q Consensus 1021 ~~~~~~~~~ii~~~t~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~i~~~~~g~~~i~v~f~~d~~ 1100 (2602)
+..++.+.+++++|+++|...+..|.+..++|+.+.|.||+|+.....+|..||++.|+++++.++|.++|+|+|++|.|
T Consensus 399 ~~~~~~~~~ii~~~t~iP~~~~~~~~t~~~~~~~i~i~i~~g~~~~~~~~~~ig~~~i~~i~~~~~g~~~i~v~f~ld~~ 478 (602)
T PF00012_consen 399 EVSNGKFSKIIPKNTPIPSKKSKSFKTVTDNQTSISIDIYEGESSSFEDNKKIGSYTISGIPPAPKGKPKIKVTFELDEN 478 (602)
T ss_dssp EETTTEEEEEESTTEBSSEEEEEEEEESSTTCSEEEEEEEESSSSBGGGSEEEEEEEEES-SSSSTTSSEEEEEEEEETT
T ss_pred cccccccccccccccccccccccccchhccccccccceeeeccccccccccccccccccccccccccccceeeEEeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEEEecCCceEEEEEecCCCCCHHHHHhhh
Q psy15216 1101 GLLSIFAYEKISGKKKFITIKPFYNMNLDEIKNGA 1135 (2602)
Q Consensus 1101 g~l~v~a~~~~~g~~~~~~~~~~~~l~~~~i~~~~ 1135 (2602)
|+|+|++.+..++.+..+++.....+++++++++.
T Consensus 479 Gil~V~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 513 (602)
T PF00012_consen 479 GILSVEAAEVETGKEEEVTVKKKETLSKEEIEELK 513 (602)
T ss_dssp SEEEEEEEETTTTEEEEEEEESSSSSCHHHHHHHH
T ss_pred eehhhhhcccccccccccccccccccccccccccc
Confidence 99999999999999999999888789999999876
|
Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B .... |
| >PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-66 Score=714.86 Aligned_cols=493 Identities=39% Similarity=0.617 Sum_probs=437.8
Q ss_pred EEEEEcCcccEEEEEEECCeEEEEeCCCCCccccEEEEEecCCcEEecHHHHhhhccCCCCchhhhhhhcCCCCCCC---
Q psy15216 2035 SIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNI--- 2111 (2602)
Q Consensus 2035 vvGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~~~~~~vG~~A~~~~~~~p~~~~~~~K~~lg~~~~~~--- 2111 (2602)
|||||||||||+||++.++.++++.|..|+|.+||+|+|.++ ++++|..|..+..++|+++++++|||||+.+.+.
T Consensus 1 viGID~Gt~~~~va~~~~~~~~ii~~~~~~~~~ps~v~~~~~-~~~~G~~a~~~~~~~~~~~~~~~k~liG~~~~~~~~~ 79 (602)
T PF00012_consen 1 VIGIDLGTTNSKVAVFKNGKPEIILNEEGKRKTPSVVSFSDN-ERLVGEDAKSQMIRNPKNTIYNLKRLIGRKFDDPDVQ 79 (602)
T ss_dssp EEEEEE-SSEEEEEEEETTEEEEE--TTS-SSEESEEEEESS-CEEETHHHHHTTTTSGGGEEESGGGTTTSBTTSHHHH
T ss_pred CEEEEeccCCEEEEEEEeccccccccccccccccceeeEeee-cccCCcchhhhcccccccccccccccccccccccccc
Confidence 799999999999999999999999999999999999999865 7899999999999999999999999999987663
Q ss_pred -CCCCCCeeeecC-CCceEEEec--Cc--eeCHHHHHHHHHHHHHHHHHHhhccccceEEEeeCCCCCHHHHHHHHHHHH
Q psy15216 2112 -NTNSFPYDFQNK-FGMLHIKTI--SG--IKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAK 2185 (2602)
Q Consensus 2112 -~~~~~~~~~~~~-~g~~~~~~~--~~--~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~l~~Aa~ 2185 (2602)
....+||.+... .|...+... +. .++|+++++++|++|++.++.+++.++.++|||||++|++.||++|++||+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~~~~Aa~ 159 (602)
T PF00012_consen 80 KEKKKFPYKVVEDPDGKVYFEVDYDGKSKTYSPEELSAMILKYLKEMAEKYLGEKVTDVVITVPAYFTDEQRQALRDAAE 159 (602)
T ss_dssp HHHTTSSSEEEEETTTEEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEE-TT--HHHHHHHHHHHH
T ss_pred hhhhcccccccccccccccccccccccceeeeeecccccchhhhcccchhhcccccccceeeechhhhhhhhhccccccc
Confidence 234678877543 565555432 33 799999999999999999999999999999999999999999999999999
Q ss_pred HcCCceeEeechhHHHHHHhhhccCCCCceEEEEEeCCceEEEEEEEEeCCEEEEEEEecCCCCchhHHHHHHHHHHHHH
Q psy15216 2186 LAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKN 2265 (2602)
Q Consensus 2186 ~AGl~~~~li~EP~AAAl~y~~~~~~~~~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~ 2265 (2602)
.|||++++||+||+|||++|++.....++++||||+||||+|+|++++.++.++++++.++..+||.+||.+|++|+.++
T Consensus 160 ~agl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~Gggt~dvs~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~~~~~ 239 (602)
T PF00012_consen 160 LAGLNVLRLINEPTAAALAYGLERSDKGKTVLVVDFGGGTFDVSVVEFSNGQFEVLATAGDNNLGGRDFDEALAEYLLEK 239 (602)
T ss_dssp HTT-EEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEEESSEEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHHH
T ss_pred ccccccceeecccccccccccccccccccceeccccccceEeeeehhcccccccccccccccccccceecceeecccccc
Confidence 99999999999999999999887766678999999999999999999999999999999999999999999999999987
Q ss_pred Hhhhc-----CChhHHHHHHHHHHHHHHHhcc--cceEEEEEE-ecC-CceEEEEcCHHHHHHHHHHHHHHHHHHHHHHH
Q psy15216 2266 AFLKK-----LSYKDVNILMIKSREIKELLSY--QSSVKLNVK-LSD-KKIVNITIDMKQFFTITQHLVNRTILLSSKAL 2336 (2602)
Q Consensus 2266 ~~~~~-----~~~~~~~~l~~~~e~~K~~ls~--~~~~~~~i~-~~~-~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~l 2336 (2602)
+..+. ...+.+.+|+.+||++|+.||. ..+..+.++ +.+ +.++.++|||++|+++++|+++++.+++.++|
T Consensus 240 ~~~~~~~d~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~l 319 (602)
T PF00012_consen 240 FKKKYKIDLRENPRAMARLLEAAEKAKEQLSSNDNTEITISIESLYDDGEDFSITITREEFEELCEPLLERIIEPIEKAL 319 (602)
T ss_dssp HHHHHSS-GTCSHHHHHHHHHHHHHHHHHTTTSSSSEEEEEEEEEETTTEEEEEEEEHHHHHHHTHHHHHHTHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeccccccccccccccccccc
Confidence 43321 2345678899999999999999 555556655 344 78899999999999999999999999999999
Q ss_pred HHcCCCccccceEEEEeCccchHHHHHHHHhhcCCcccCCCCccchhhhHHHHHhHHhcCCCCCCCceeeeccccccceE
Q psy15216 2337 MDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGI 2416 (2602)
Q Consensus 2337 ~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~aVa~GAa~~a~~~~~~~~~~~~~~~~d~~~~~~gi 2416 (2602)
++++.+..+|+.|+||||+||+|+||+.|++.|+.++..+.||++|||+|||++|+.+++.+... .+.+.|++|++|||
T Consensus 320 ~~~~~~~~~i~~V~lvGG~sr~p~v~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~~~~~~~~~-~~~~~d~~~~~~~i 398 (602)
T PF00012_consen 320 KDAGLKKEDIDSVLLVGGSSRIPYVQEALKELFGKKISKSVNPDEAVARGAALYAAILSGSFRVK-DIKIIDVTPFSIGI 398 (602)
T ss_dssp HHTT--GGGESEEEEESGGGGSHHHHHHHHHHTTSEEB-SS-TTTHHHHHHHHHHHHHHTSCSST-SSCESEBESSEEEE
T ss_pred ccccccccccceeEEecCcccchhhhhhhhhccccccccccccccccccccccchhhhccccccc-cccccccccccccc
Confidence 99999999999999999999999999999999998889999999999999999999999865544 47899999999999
Q ss_pred EeeccEEEEEEecCCcCCCCcEEEEEeecccccceeEEEeecCcccccCCceeEEEEeeCCCCCCCCccEEEEEEEEcCC
Q psy15216 2417 ETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDAD 2496 (2602)
Q Consensus 2417 ~~~~~~~~~ii~k~t~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~f~id~~ 2496 (2602)
+..++.+.+++++|+++|...+..|.+..++|+.+.|.||||+.....+|..||++.++++++.++|.++|+|+|++|.|
T Consensus 399 ~~~~~~~~~ii~~~t~iP~~~~~~~~t~~~~~~~i~i~i~~g~~~~~~~~~~ig~~~i~~i~~~~~g~~~i~v~f~ld~~ 478 (602)
T PF00012_consen 399 EVSNGKFSKIIPKNTPIPSKKSKSFKTVTDNQTSISIDIYEGESSSFEDNKKIGSYTISGIPPAPKGKPKIKVTFELDEN 478 (602)
T ss_dssp EETTTEEEEEESTTEBSSEEEEEEEEESSTTCSEEEEEEEESSSSBGGGSEEEEEEEEES-SSSSTTSSEEEEEEEEETT
T ss_pred cccccccccccccccccccccccccchhccccccccceeeeccccccccccccccccccccccccccccceeeEEeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEEEeecCCcEEEEEEecCCCCChHHHhc
Q psy15216 2497 GLLSIFAYEKISGKKKFITIKPFYNMNLDEIKN 2529 (2602)
Q Consensus 2497 g~l~V~a~~~~tg~~~~~~i~~~~~l~~~ei~~ 2529 (2602)
|+|+|++.+..++++.++++.....+++++++.
T Consensus 479 Gil~V~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 511 (602)
T PF00012_consen 479 GILSVEAAEVETGKEEEVTVKKKETLSKEEIEE 511 (602)
T ss_dssp SEEEEEEEETTTTEEEEEEEESSSSSCHHHHHH
T ss_pred eehhhhhcccccccccccccccccccccccccc
Confidence 999999999999999999999887799999875
|
Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B .... |
| >COG0217 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-65 Score=558.70 Aligned_cols=228 Identities=40% Similarity=0.646 Sum_probs=213.5
Q ss_pred Hhh-cccCcccccccccccchhhHHHHHHHHHHHHHhc-CCCCCCChHHHHHHHHHHHcCCChhHHHHHHHhccCCCCCC
Q psy15216 1190 MLN-KAWGLEENSRLSFDAKRGKICTRIMRELRVAINF-GNNPDTNIKLRLAIEKALDANIPKNNIFRAIQKNNSNIKNE 1267 (2602)
Q Consensus 1190 ~l~-~~~~~~~~srl~~d~~~~~~~~~~~~~i~~a~~~-g~~p~~n~~l~~~~~~a~~~~~p~~~i~~ai~~~~~~~~~~ 1267 (2602)
|-+ ++|.+++|.|.+.|++|+|+|+||+|||++|||. ||||++|||||.||++||++|||||||||||+||+|+. +
T Consensus 1 MaGHsKw~nIkhrK~a~Dakr~Kif~Kl~keI~vAaK~Gg~dP~~NprLr~aI~kAk~~nmPkd~IerAI~ka~G~~--d 78 (241)
T COG0217 1 MAGHSKWANIKHRKAAQDAKRSKIFTKLIKEITVAAKQGGPDPESNPRLRTAIEKAKAANMPKDNIERAIKKASGGK--D 78 (241)
T ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHhccCCC--C
Confidence 445 4999999999999999999999999999999975 57999999999999999999999999999999999975 4
Q ss_pred CcceEEEEEEEeccCCcEEEEEEecCCchhhHHHHHHhhhccCccccCCcceeEeeceeEEEEECCC-CChhHHHHHHHh
Q psy15216 1268 NINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNKNGGNLSKEGSVLFMFKHCGQLLFLPN-TKKNTLLDLALE 1346 (2602)
Q Consensus 1268 ~~~~~~~~ye~~~p~g~~~~v~~~tdn~~r~~~~~r~~~~k~~g~~~~~g~v~~~f~~~g~~~~~~~-~~~~~~~~~~~~ 1346 (2602)
+.+|+|++|||||||||||||||||||+|||+++||++|+|+||+||++|||+|||+|||+|.+.++ .++|++||.|||
T Consensus 79 ~~~~~ei~YEGygP~GvaiiVe~LTDN~NRTas~vR~~F~K~GG~lg~~GSV~~mF~~kGvi~~~~~~~~ed~l~e~~ie 158 (241)
T COG0217 79 GANYEEIRYEGYGPGGVAIIVEALTDNRNRTASNVRSAFNKNGGNLGEPGSVSYMFDRKGVIVVEKNEIDEDELLEAAIE 158 (241)
T ss_pred ccceEEEEEEeECCCceEEEEEeccCCcchhHHHHHHHHHhcCCccCCCceEEEEEeccEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999999999999999999999999886 599999999999
Q ss_pred cCCceeeeccCceEEEEeCcccHHHHHHHHHhcCCCccccceeeeeceeeeccCCCCCCCHHHHHHHHHHHhhc
Q psy15216 1347 KGAEDFLIDKDNKITIITSPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDATTPIDPRVVDKMIPYLRVQ 1420 (2602)
Q Consensus 1347 ~g~~d~~~~~~~~~~~~~~~~~~~~v~~aL~~~g~~~~~~ei~~iP~~~v~L~~~~~~~~~~v~eal~~~l~~~ 1420 (2602)
+|||||+. +|+.|+|+|+|++|.+|+++|+++|+++..+++.|+|++++.++..+.....+++++|++..+.+
T Consensus 159 agaeDv~~-~~~~~~V~t~p~~~~~V~~~L~~~g~~~~~ael~~iP~~~v~~~~e~a~k~~kLid~LEd~DDVQ 231 (241)
T COG0217 159 AGAEDVEE-DEGSIEVYTEPEDFNKVKEALEAAGYEIESAELTMIPQNTVELDDEDAEKLEKLIDALEDDDDVQ 231 (241)
T ss_pred CCchhhhc-CCCeEEEEEChHHHHHHHHHHHHcCCceeeeeEEEecCCceecCHHHHHHHHHHHHHHhcccchH
Confidence 99999954 58889999999999999999999999999999999999999998877777788888888877764
|
|
| >KOG0103|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-58 Score=560.25 Aligned_cols=463 Identities=29% Similarity=0.455 Sum_probs=418.6
Q ss_pred EEEEEcCcccEEEEEEECCeeEEEeCCCCCccccEEEEEecCCcEEEcHHHHhhhccCCCCchhhhhhhhCCCCCCCCCC
Q psy15216 639 SIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNINTN 718 (2602)
Q Consensus 639 vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~v~~~~~~~~~vG~~A~~~~~~~p~~~~~~~K~~lg~~~~~~~~~ 718 (2602)
++|||||.-+|.+|+.+.+..++|.|+.++|.||++|+|.+. .+++|.+|+++...|+.|++..+||++|+.++++..+
T Consensus 3 vvG~D~Gn~nc~iavAr~~gIe~i~nd~Snr~TPa~vsfg~K-~R~~G~aak~~~~~n~kntv~~~KRl~Gr~f~dP~~q 81 (727)
T KOG0103|consen 3 VVGFDLGNENCYIAVARQGGIEVVANDYSNRETPAIVSFGPK-NRFIGVAAKNQQTTNVKNTVSNFKRLIGRKFSDPEVQ 81 (727)
T ss_pred ceeeeccccceeeeeeccCCceeeeeccccccCcceeeeccc-cceeeeccccceeecccccchhhhhhhccccCChHhh
Confidence 799999999999999999999999999999999999999776 4899999999999999999999999999999997443
Q ss_pred ----CCCeeee-cCCCceEEEEe----CceeCHHHHHHHHHHHHHHHHHHhhcCccceEEEEEcCCCCHHHHHHHHHHHH
Q psy15216 719 ----SFPYDFQ-NKFGMLHIKTI----SGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAK 789 (2602)
Q Consensus 719 ----~~~~~~~-~~~~~~~~~~~----~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~~~~Aa~ 789 (2602)
.+|+.+. ..+|.+.+... .+.++|++|.||+|.+|++.+++.+..++.++||+||+||++.||+++.+||+
T Consensus 82 ~~~~~~~~~vv~~~dg~vgi~v~ylge~~~ft~~Qv~Am~l~klk~~ae~~l~~~v~DcvIavP~~FTd~qRravldAA~ 161 (727)
T KOG0103|consen 82 REIKSLPRSVVQLKDGDVGIKVEYLGEKHPFTPEQVLAMLLTKLKATAEKNLKSPVSDCVIAVPSYFTDSQRRAVLDAAR 161 (727)
T ss_pred hcccccchheeecCCCCcceeehcccCCCCCChHHHHHHHHHHHHHHHHHhcCCCCCCeeEeccccccHHHHHHHHhHHh
Confidence 5888887 66777766543 46899999999999999999999999999999999999999999999999999
Q ss_pred HcCCceEEEechhHHHHHHhhhccCc------ccceEEEEEeCCceEEEEEEEEECCEEEEEEEecCCCCcchHHHHHHH
Q psy15216 790 LAGLNVLRLLNEPTSAAIAYKLDKNI------FEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLF 863 (2602)
Q Consensus 790 ~AGl~~~~li~EPtAAAl~y~~~~~~------~~~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~ 863 (2602)
+|||+++++++|-||+|++|+..+.. ++.+|+++|+|..++.+|++.+..|.+.++++.+|.++||++||+.|.
T Consensus 162 iagLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~~q~si~aF~kG~lkvl~ta~D~~lGgr~fDe~L~ 241 (727)
T KOG0103|consen 162 IAGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIAAFTKGKLKVLATAFDRKLGGRDFDEALI 241 (727)
T ss_pred hcCccceeeeecchHhHhhcccccccCCCcccCcceEEEEecccccceeeeeeeccCcceeeeeecccccccchHHHHHH
Confidence 99999999999999999999987653 345899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcc-----CCHHHHHHHHHHHHHHHHHcccccceEEEEE-ecCCceEEEEeCHHHHHHHHHHHHHHHHHHHH
Q psy15216 864 SWIVKNAFLKK-----LSYKDVNILMIKSREIKELLSYQSSVKLNVK-LSDKKIVNITIDMKQFFTITQHLVNRTILLSS 937 (2602)
Q Consensus 864 ~~l~~~~~~~~-----~~~~~~~~l~~~~e~~K~~LS~~~~~~~~i~-~~~~~~~~~~itr~~fe~l~~~~~~~~~~~i~ 937 (2602)
+|++++|+.+. .+.++..||+.+|||.|+.||.+....++|+ +.++.+.+-.|+|++||+++.|+++|+..++.
T Consensus 242 ~hfa~efk~kykidv~sn~kA~lRL~~~~EKlKK~lSAN~~~plNIEcfM~d~dvs~~i~ReEfEel~~plL~rv~~p~~ 321 (727)
T KOG0103|consen 242 DHFAKEFKTKYKIDVRSNAKAKLRLLAECEKLKKVLSANTELPLNIECFMNDKDVSSKIKREEFEELSAPLLERVEVPLL 321 (727)
T ss_pred HHHHHHhccccccchhhchhHHHHHHHHHHHHHHHhhcCcCCCcchhheeecchhhhhccHHHHHHHHHHHHHhhhHHHH
Confidence 99999998766 5788999999999999999999988899998 78889999999999999999999999999999
Q ss_pred HHHHHcCCCccccceEEEecCccchHHHHHHHHhhccCcccCcCCcchHhHHHHHHHhHHhcCCCCCCCceeeecccccc
Q psy15216 938 KALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLS 1017 (2602)
Q Consensus 938 ~~l~~a~~~~~~i~~V~LvGG~sr~P~v~~~l~~~f~~~~~~~~~p~~aVa~GAa~~a~~l~~~~~~~~~~~~~dv~~~~ 1017 (2602)
++|.++++..+||+.|.+|||+||+|.|+++|.++||+.+.++.|.++|||+|||+++|++++.+++ ..+.+.|+.|++
T Consensus 322 ~~l~d~~l~~edi~~VEiVGg~sripaike~Is~~Fgke~s~TlN~dEavarG~ALqcAIlSP~frV-Ref~v~Di~pys 400 (727)
T KOG0103|consen 322 KALADAKLKVEDIHAVEIVGGLSRIPAIKEMISDFFGKELSRTLNQDEAVARGAALQCAILSPTFRV-REFSVEDIVPYS 400 (727)
T ss_pred HHHHHhcCccccceeEEEecCcccchHHHHHHHHHhCCcccccccHHHHHHHhHHHHHHhcCccccc-eecceeccccee
Confidence 9999999999999999999999999999999999999999999999999999999999999998873 458899999999
Q ss_pred ceEeeec-----cEEEEEEecCCCCCCCcEEEEEeccccccceeeeEeecC-ccccccCceeeeeEecCCCCCCCC-ccE
Q psy15216 1018 LGIETIG-----GLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGE-DELVKNCQVLANFELRDIPPMPAG-RAR 1090 (2602)
Q Consensus 1018 ~gi~~~~-----~~~~~ii~~~t~iP~~~~~~~~~~~d~q~~~~i~i~~ge-~~~~~~~~~lg~~~l~~i~~~~~g-~~~ 1090 (2602)
+.+++.. +....++|+|.++|.++..+|. +.+ .+.+.++.+. ...+.....|+++.+.++.|...| ..+
T Consensus 401 Is~~w~~~~ed~~~~~evF~~~~~~p~~K~lT~~--Rk~--~F~lea~yt~~~~lp~~~~kI~~~~i~~v~~~~~ge~sk 476 (727)
T KOG0103|consen 401 ISLRWVKQGEDGGSVTEVFPKGHPSPSVKLLTFN--RKG--PFTLEAKYTKVNKLPYPKPKIEKWTITGVTPSEDGEFSK 476 (727)
T ss_pred EEEEeccccccCCCceeeecCCCCCCCceEEEEE--ecC--ceEEEEEeccccccCCCCCceeeEEecccccCccccccc
Confidence 9998652 4557899999999976655553 333 5566666554 555656679999999999998774 456
Q ss_pred EEEEEEECCCeeEEEEE
Q psy15216 1091 IKVTYQVDADGLLSIFA 1107 (2602)
Q Consensus 1091 i~v~f~~d~~g~l~v~a 1107 (2602)
++|...+|.+|+.+|.-
T Consensus 477 VKvkvr~n~~Gi~~i~s 493 (727)
T KOG0103|consen 477 VKVKVRLNEHGIDTIES 493 (727)
T ss_pred eeEEEEEcCccceeeec
Confidence 99999999999999854
|
|
| >PRK12378 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-58 Score=525.56 Aligned_cols=223 Identities=35% Similarity=0.589 Sum_probs=202.5
Q ss_pred hhcccCcccccccccccchhhHHHHHHHHHHHHHhc-CCCCCCChHHHHHHHHHHHcCCChhHHHHHHHhccCCCCCCCc
Q psy15216 1191 LNKAWGLEENSRLSFDAKRGKICTRIMRELRVAINF-GNNPDTNIKLRLAIEKALDANIPKNNIFRAIQKNNSNIKNENI 1269 (2602)
Q Consensus 1191 l~~~~~~~~~srl~~d~~~~~~~~~~~~~i~~a~~~-g~~p~~n~~l~~~~~~a~~~~~p~~~i~~ai~~~~~~~~~~~~ 1269 (2602)
++++|.+++|.|.+.|++|+|+|+||+|+|++|+|. ||||+.|||||+||++||++|||||+||||||||+|. ++.
T Consensus 1 ~g~kW~~Ikh~K~~~Da~ksk~f~kl~reI~vA~k~GG~dP~~N~~Lr~aI~~Ak~~nmPkd~IerAIkk~~g~---~~~ 77 (235)
T PRK12378 1 MGRAWENIKAKKAKKDGAKSKIFAKLGKEIYVAAKQGGPDPESNPALRFVIERAKKANVPKDVIERAIKKAKGG---GGE 77 (235)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHHHHHHHHhCCCHHHHHHHHHhccCC---CCC
Confidence 467999999999999999999999999999999975 5699999999999999999999999999999999996 366
Q ss_pred ceEEEEEEEeccCCcEEEEEEecCCchhhHHHHHHhhhccCccccCCcceeEeeceeEEEEECCCCChhHHHHHHHhcCC
Q psy15216 1270 NYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGA 1349 (2602)
Q Consensus 1270 ~~~~~~ye~~~p~g~~~~v~~~tdn~~r~~~~~r~~~~k~~g~~~~~g~v~~~f~~~g~~~~~~~~~~~~~~~~~~~~g~ 1349 (2602)
+|++++|||||||||+|||||||||+|||+++||++|+|+||+||++|||+|||+|||+|.+..+ ++|++||.|||+||
T Consensus 78 ~~~e~~YEgygPgGvaiiVe~lTDN~nRt~~~vr~~f~K~gg~l~~~gsv~~~Fe~kG~i~i~~~-~~d~~~e~aieaGa 156 (235)
T PRK12378 78 DYEEVRYEGFGPNGVMVIVECLTDNVNRTVANVRSAFNKNGGNLGTSGSVAFMFDHKGVFVFEGD-DEDELLEALIDADV 156 (235)
T ss_pred ceEEEEEEEEcCCCcEEEEEECCCCHHHHHHHHHHHHhhcCCeECCCCceeeeeecceEEEeCCC-CHHHHHHHHHhCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999865 89999999999988
Q ss_pred --ceeeeccCceEEEEeCcccHHHHHHHHHhcCCCccccceeeeeceeeeccCCCCCCCHHHHHHHHHHHh
Q psy15216 1350 --EDFLIDKDNKITIITSPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDATTPIDPRVVDKMIPYLR 1418 (2602)
Q Consensus 1350 --~d~~~~~~~~~~~~~~~~~~~~v~~aL~~~g~~~~~~ei~~iP~~~v~L~~~~~~~~~~v~eal~~~l~ 1418 (2602)
||++ ++++.|+|||+|++|.+|+++|++.|+++.++++.|+|.+++.|+.........++++|.+..+
T Consensus 157 ~~edv~-~~~~~~~i~t~p~~~~~v~~~L~~~g~~~~~sei~~~P~~~v~l~~e~~~~~~~li~~Led~dD 226 (235)
T PRK12378 157 DVEDVE-EEEGTITVYTDPTDFHKVKKALEAAGIEFLVAELEMIPQNPVELSGEDLEQFEKLLDALEDDDD 226 (235)
T ss_pred Cccccc-ccCCeEEEEECHHHHHHHHHHHHHcCCCceeeEEEEecCCCccCCHHHHHHHHHHHHHHhcCCC
Confidence 8884 4556899999999999999999999999999999999999888855444444455555554443
|
|
| >PRK00110 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-58 Score=528.04 Aligned_cols=227 Identities=41% Similarity=0.685 Sum_probs=207.1
Q ss_pred Hhhc-ccCcccccccccccchhhHHHHHHHHHHHHHhc-CCCCCCChHHHHHHHHHHHcCCChhHHHHHHHhccCCCCCC
Q psy15216 1190 MLNK-AWGLEENSRLSFDAKRGKICTRIMRELRVAINF-GNNPDTNIKLRLAIEKALDANIPKNNIFRAIQKNNSNIKNE 1267 (2602)
Q Consensus 1190 ~l~~-~~~~~~~srl~~d~~~~~~~~~~~~~i~~a~~~-g~~p~~n~~l~~~~~~a~~~~~p~~~i~~ai~~~~~~~~~~ 1267 (2602)
|.++ +|++++|.|.+.|++|+|+|+||+|||++|+|. ||||+.||+||+||++||++|||||+||||||||+|.. +
T Consensus 1 maGHskW~~Ikh~K~~~D~kksk~f~kl~reI~vAak~GG~DP~~N~~Lr~aI~~Ak~~nmPkd~IerAIkk~~g~~--~ 78 (245)
T PRK00110 1 MAGHSKWANIKHRKGAQDAKRGKIFTKLIREITVAAKLGGGDPEGNPRLRLAIDKAKAANMPKDNIERAIKKGTGEL--D 78 (245)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCC--C
Confidence 4565 999999999999999999999999999999975 56999999999999999999999999999999999974 4
Q ss_pred CcceEEEEEEEeccCCcEEEEEEecCCchhhHHHHHHhhhccCccccCCcceeEeeceeEEEEECCCCChhHHHHHHHhc
Q psy15216 1268 NINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEK 1347 (2602)
Q Consensus 1268 ~~~~~~~~ye~~~p~g~~~~v~~~tdn~~r~~~~~r~~~~k~~g~~~~~g~v~~~f~~~g~~~~~~~~~~~~~~~~~~~~ 1347 (2602)
+.+|++++|||||||||+|||||||||+|||+++||++|+|+||+||++|||+|||+|||+|.+... ++|++||.|||+
T Consensus 79 ~~~~~e~~YEg~gP~GvaiiVe~lTDN~nRt~~~vR~~f~K~gG~l~~~Gsv~~~Fe~kG~i~~~~~-~~d~~~e~aiea 157 (245)
T PRK00110 79 GANYEEIRYEGYGPGGVAIIVEALTDNRNRTAAEVRHAFSKNGGNLGETGSVSYMFDRKGVIVIEPL-DEDELMEAALEA 157 (245)
T ss_pred ccceEEEEEEEEcCCCeEEEEEEecCCHHHHHHHHHHHHHhcCceeCCCcceEEEeccceEEEeCCC-CHHHHHHHHHhC
Confidence 7899999999999999999999999999999999999999999999999999999999999999854 799999999999
Q ss_pred CCceeeeccCceEEEEeCcccHHHHHHHHHhcCCCccccceeeeeceeeeccCCCCCCCHHHHHHHHHHHhhc
Q psy15216 1348 GAEDFLIDKDNKITIITSPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDATTPIDPRVVDKMIPYLRVQ 1420 (2602)
Q Consensus 1348 g~~d~~~~~~~~~~~~~~~~~~~~v~~aL~~~g~~~~~~ei~~iP~~~v~L~~~~~~~~~~v~eal~~~l~~~ 1420 (2602)
||||+++ +++.|+|+|+|++|.+|+++|++.|+++.++++.|+|++++.++.........++++|.+..+.+
T Consensus 158 GaeDv~~-e~~~~~i~~~p~~~~~v~~~L~~~g~~~~~sei~~~P~~~v~l~~e~~~~~~~li~~Led~dDVq 229 (245)
T PRK00110 158 GAEDVET-DDESFEVITAPEDFEAVRDALEAAGLEAESAEVTMIPQNTVELDEETAEKLLKLIDALEDLDDVQ 229 (245)
T ss_pred CCCEeec-cCCeEEEEECHHHHHHHHHHHHHcCCCeeeeEEEEecCCCcccCHHHHHHHHHHHHHHhcCCCcc
Confidence 9999954 56789999999999999999999999999999999999988886554555556666666655543
|
|
| >KOG0103|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-54 Score=529.59 Aligned_cols=463 Identities=30% Similarity=0.463 Sum_probs=411.3
Q ss_pred EEEEEcCcccEEEEEEECCeEEEEeCCCCCccccEEEEEecCCcEEecHHHHhhhccCCCCchhhhhhhcCCCCCCCCC-
Q psy15216 2035 SIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNINT- 2113 (2602)
Q Consensus 2035 vvGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~~~~~~vG~~A~~~~~~~p~~~~~~~K~~lg~~~~~~~~- 2113 (2602)
++|||||..+|.+|+.+.+..++|.|+.++|.||++|+|.+ .++++|..|+.+..+|+.+++..+||++|+.+.++..
T Consensus 3 vvG~D~Gn~nc~iavAr~~gIe~i~nd~Snr~TPa~vsfg~-K~R~~G~aak~~~~~n~kntv~~~KRl~Gr~f~dP~~q 81 (727)
T KOG0103|consen 3 VVGFDLGNENCYIAVARQGGIEVVANDYSNRETPAIVSFGP-KNRFIGVAAKNQQTTNVKNTVSNFKRLIGRKFSDPEVQ 81 (727)
T ss_pred ceeeeccccceeeeeeccCCceeeeeccccccCcceeeecc-ccceeeeccccceeecccccchhhhhhhccccCChHhh
Confidence 79999999999999999999999999999999999999965 4579999999999999999999999999999999854
Q ss_pred ---CCCCeeee-cCCCceEEE----ecCceeCHHHHHHHHHHHHHHHHHHhhccccceEEEeeCCCCCHHHHHHHHHHHH
Q psy15216 2114 ---NSFPYDFQ-NKFGMLHIK----TISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAK 2185 (2602)
Q Consensus 2114 ---~~~~~~~~-~~~g~~~~~----~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~l~~Aa~ 2185 (2602)
..+|+.+. ..+|.+.+. +....++|++|++|+|.+|+..+++.+..++.++||+||+||++.||+++.+||+
T Consensus 82 ~~~~~~~~~vv~~~dg~vgi~v~ylge~~~ft~~Qv~Am~l~klk~~ae~~l~~~v~DcvIavP~~FTd~qRravldAA~ 161 (727)
T KOG0103|consen 82 REIKSLPRSVVQLKDGDVGIKVEYLGEKHPFTPEQVLAMLLTKLKATAEKNLKSPVSDCVIAVPSYFTDSQRRAVLDAAR 161 (727)
T ss_pred hcccccchheeecCCCCcceeehcccCCCCCChHHHHHHHHHHHHHHHHHhcCCCCCCeeEeccccccHHHHHHHHhHHh
Confidence 35677764 445554443 3456799999999999999999999999999999999999999999999999999
Q ss_pred HcCCceeEeechhHHHHHHhhhccCC------CCceEEEEEeCCceEEEEEEEEeCCEEEEEEEecCCCCchhHHHHHHH
Q psy15216 2186 LAGLNVLRLLNEPTSAAIAYKLDKNI------FEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLF 2259 (2602)
Q Consensus 2186 ~AGl~~~~li~EP~AAAl~y~~~~~~------~~~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~ 2259 (2602)
.|||+.++|++|-+|+|++|+..... .+.+++++|+|..++.+|++.+..|.++++++.+|..+||++||+.|.
T Consensus 162 iagLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~~q~si~aF~kG~lkvl~ta~D~~lGgr~fDe~L~ 241 (727)
T KOG0103|consen 162 IAGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIAAFTKGKLKVLATAFDRKLGGRDFDEALI 241 (727)
T ss_pred hcCccceeeeecchHhHhhcccccccCCCcccCcceEEEEecccccceeeeeeeccCcceeeeeecccccccchHHHHHH
Confidence 99999999999999999999986643 245799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCC------hhHHHHHHHHHHHHHHHhcccceEEEEEE-ecCCceEEEEcCHHHHHHHHHHHHHHHHHHH
Q psy15216 2260 SWIVKNAFLKKLS------YKDVNILMIKSREIKELLSYQSSVKLNVK-LSDKKIVNITIDMKQFFTITQHLVNRTILLS 2332 (2602)
Q Consensus 2260 ~~l~~~~~~~~~~------~~~~~~l~~~~e~~K~~ls~~~~~~~~i~-~~~~~~~~~~itr~~fe~l~~~~~~~~~~~i 2332 (2602)
+|++++ |+.+++ .++.-+|+.+||+.|+.||.+....++|+ +.++.+.+-.|+|++||+++.|+++++...+
T Consensus 242 ~hfa~e-fk~kykidv~sn~kA~lRL~~~~EKlKK~lSAN~~~plNIEcfM~d~dvs~~i~ReEfEel~~plL~rv~~p~ 320 (727)
T KOG0103|consen 242 DHFAKE-FKTKYKIDVRSNAKAKLRLLAECEKLKKVLSANTELPLNIECFMNDKDVSSKIKREEFEELSAPLLERVEVPL 320 (727)
T ss_pred HHHHHH-hccccccchhhchhHHHHHHHHHHHHHHHhhcCcCCCcchhheeecchhhhhccHHHHHHHHHHHHHhhhHHH
Confidence 999997 666553 34566899999999999999988889998 7788889999999999999999999999999
Q ss_pred HHHHHHcCCCccccceEEEEeCccchHHHHHHHHhhcCCcccCCCCccchhhhHHHHHhHHhcCCCCCCCceeeeccccc
Q psy15216 2333 SKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPL 2412 (2602)
Q Consensus 2333 ~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~aVa~GAa~~a~~~~~~~~~~~~~~~~d~~~~ 2412 (2602)
.++|.++++..+||+.|.+|||+||+|.|+++|+++||+.+..+.|.++|||+|||+++|++++.+++++ +.+.|+.|+
T Consensus 321 ~~~l~d~~l~~edi~~VEiVGg~sripaike~Is~~Fgke~s~TlN~dEavarG~ALqcAIlSP~frVRe-f~v~Di~py 399 (727)
T KOG0103|consen 321 LKALADAKLKVEDIHAVEIVGGLSRIPAIKEMISDFFGKELSRTLNQDEAVARGAALQCAILSPTFRVRE-FSVEDIVPY 399 (727)
T ss_pred HHHHHHhcCccccceeEEEecCcccchHHHHHHHHHhCCcccccccHHHHHHHhHHHHHHhcCcccccee-cceecccce
Confidence 9999999999999999999999999999999999999999999999999999999999999999988765 889999999
Q ss_pred cceEEeec-----cEEEEEEecCCcCCCCcEEEEEeecccccceeEEEeecC-cccccCCceeEEEEeeCCCCCCCC-cc
Q psy15216 2413 SLGIETIG-----GLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGE-DELVKNCQVLANFELRDIPPMPAG-RA 2485 (2602)
Q Consensus 2413 ~~gi~~~~-----~~~~~ii~k~t~iP~~~~~~~~~~~d~q~~~~i~i~~ge-~~~~~~~~~lg~~~l~~~~~~~~g-~~ 2485 (2602)
++.+++.. +....++++|.++|.++..+|. +. ..+.+.++.+. ...+.....|+++.+.++.+...| ..
T Consensus 400 sIs~~w~~~~ed~~~~~evF~~~~~~p~~K~lT~~--Rk--~~F~lea~yt~~~~lp~~~~kI~~~~i~~v~~~~~ge~s 475 (727)
T KOG0103|consen 400 SISLRWVKQGEDGGSVTEVFPKGHPSPSVKLLTFN--RK--GPFTLEAKYTKVNKLPYPKPKIEKWTITGVTPSEDGEFS 475 (727)
T ss_pred eEEEEeccccccCCCceeeecCCCCCCCceEEEEE--ec--CceEEEEEeccccccCCCCCceeeEEecccccCcccccc
Confidence 99988643 4457899999999966655543 33 36677777765 444546679999999999888774 46
Q ss_pred EEEEEEEEcCCccEEEEEE
Q psy15216 2486 RIKVTYQVDADGLLSIFAY 2504 (2602)
Q Consensus 2486 ~i~v~f~id~~g~l~V~a~ 2504 (2602)
++.|...+|.+|+.+|..-
T Consensus 476 kVKvkvr~n~~Gi~~i~sA 494 (727)
T KOG0103|consen 476 KVKVKVRLNEHGIDTIESA 494 (727)
T ss_pred ceeEEEEEcCccceeeecc
Confidence 7999999999999998443
|
|
| >TIGR01033 DNA-binding regulatory protein, YebC/PmpR family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-56 Score=512.47 Aligned_cols=224 Identities=39% Similarity=0.672 Sum_probs=200.9
Q ss_pred Hhhc-ccCcccccccccccchhhHHHHHHHHHHHHHhcC-CCCCCChHHHHHHHHHHHcCCChhHHHHHHHhccCCCCCC
Q psy15216 1190 MLNK-AWGLEENSRLSFDAKRGKICTRIMRELRVAINFG-NNPDTNIKLRLAIEKALDANIPKNNIFRAIQKNNSNIKNE 1267 (2602)
Q Consensus 1190 ~l~~-~~~~~~~srl~~d~~~~~~~~~~~~~i~~a~~~g-~~p~~n~~l~~~~~~a~~~~~p~~~i~~ai~~~~~~~~~~ 1267 (2602)
|.++ +|.+++|.|.+.|++|+|+|+||+|+|++|+|.| |||+.||+||+||++||++|||||+||||||||+|.. +
T Consensus 1 maGHskw~~Ikh~K~~~D~~ksk~f~kl~r~I~vA~k~GG~DP~~N~~L~~ai~~Ak~~~~Pkd~IerAIkr~~g~~--~ 78 (238)
T TIGR01033 1 MAGHSKWANIKHRKAAQDAKRGKIFTKLIKEIIVAAKLGGGDPESNPRLRTAIEKAKAANMPKDNIERAIKKGAGEL--D 78 (238)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCC--C
Confidence 4565 9999999999999999999999999999999765 6999999999999999999999999999999999974 3
Q ss_pred CcceEEEEEEEeccCCcEEEEEEecCCchhhHHHHHHhhhccCccccCCcceeEeeceeEEEEECCC-CChhHHHHHHHh
Q psy15216 1268 NINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNKNGGNLSKEGSVLFMFKHCGQLLFLPN-TKKNTLLDLALE 1346 (2602)
Q Consensus 1268 ~~~~~~~~ye~~~p~g~~~~v~~~tdn~~r~~~~~r~~~~k~~g~~~~~g~v~~~f~~~g~~~~~~~-~~~~~~~~~~~~ 1346 (2602)
+.+|++++|||||||||+|||||||||+|||+++||++|+|+||+||++|||+|||+|||+|.+..+ .++|++||.|||
T Consensus 79 ~~~~~~~~YEg~gP~GvaiiVe~lTDN~nRt~~~ir~~f~K~gg~l~~~gsv~~~Fe~kG~i~~~~~~~~~d~~~e~aie 158 (238)
T TIGR01033 79 GSNYEEITYEGYAPGGVAIIVECLTDNKNRTASEVRSAFNKNGGSLGEPGSVSYLFSRKGVIEVPKNEVDEEDLMEAAIE 158 (238)
T ss_pred ccceEEEEEEEEcCCceEEEEEEecCCHHhHHHHHHHHHHHcCCeeCCCCceeeeeecceEEEECCCCCCHHHHHHHHHh
Confidence 7799999999999999999999999999999999999999999999999999999999999999753 578999999999
Q ss_pred cCCceeeeccCceEEEEeCcccHHHHHHHHHhcCCCccccceeeeeceeeeccCCCCCCCHHHHHHHHHH
Q psy15216 1347 KGAEDFLIDKDNKITIITSPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDATTPIDPRVVDKMIPY 1416 (2602)
Q Consensus 1347 ~g~~d~~~~~~~~~~~~~~~~~~~~v~~aL~~~g~~~~~~ei~~iP~~~v~L~~~~~~~~~~v~eal~~~ 1416 (2602)
+||||++.++ +.|+|+|+|++|.+|+++|++.|+++.++++.|+|.+++.++.........++++|.+.
T Consensus 159 aGAedv~~~~-~~~~v~~~~~~~~~v~~~L~~~g~~i~~sei~~~P~~~v~l~~e~~~~~~~li~~Lee~ 227 (238)
T TIGR01033 159 AGAEDIDVDD-DEFEVYTAPEELEKVKEALEAKGFPIESAEITMIPLTTVDLDDEQAEKLLKLIDALEDD 227 (238)
T ss_pred CCCceeeccC-CcEEEEECHHHHHHHHHHHHHcCCCceeeEEEEecCCCcccCHHHHHHHHHHHHHHhcC
Confidence 9999996444 45999999999999999999999999999999999998777443333333444444433
|
This model describes a minimally characterized protein family, restricted to bacteria excepting for some eukaryotic sequences that have possible transit peptides. YebC from E. coli is crystallized, and PA0964 from Pseudomonas aeruginosa has been shown to be a sequence-specific DNA-binding regulatory protein. |
| >PF01709 Transcrip_reg: Transcriptional regulator; InterPro: IPR002876 This entry represents the core region of several hypothetical proteins found in bacteria, plants, and yeast proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-55 Score=506.86 Aligned_cols=220 Identities=38% Similarity=0.644 Sum_probs=185.4
Q ss_pred cccCcccccccccccchhhHHHHHHHHHHHHHhc-CCCCCCChHHHHHHHHHHHcCCChhHHHHHHHhccCCCCCCCcce
Q psy15216 1193 KAWGLEENSRLSFDAKRGKICTRIMRELRVAINF-GNNPDTNIKLRLAIEKALDANIPKNNIFRAIQKNNSNIKNENINY 1271 (2602)
Q Consensus 1193 ~~~~~~~~srl~~d~~~~~~~~~~~~~i~~a~~~-g~~p~~n~~l~~~~~~a~~~~~p~~~i~~ai~~~~~~~~~~~~~~ 1271 (2602)
++|.+++|.|.+.|++|+|+|+||+|+|++|+|. |+||+.|++||+||++||++||||++||||||||+|.. ++.+|
T Consensus 1 sKW~nIkh~K~~~D~~ksk~f~kl~reI~~Avk~GG~DP~~N~~L~~ai~~Ak~~nmPk~~IerAIkk~~~~~--~~~~~ 78 (234)
T PF01709_consen 1 SKWSNIKHKKAAQDAKKSKLFTKLSREITVAVKEGGPDPDMNPRLRSAIEKAKKANMPKDNIERAIKKASGKS--DGANY 78 (234)
T ss_dssp -SCGGTSSSTTTTTTSHHHHHHHHHHHHHHHHHCC-S-GGGSHHHHHHHHHHHHTT--HHHHHHHHHHCCSTS--ST---
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHhcCcCC--CCcCc
Confidence 4799999999999999999999999999999976 57999999999999999999999999999999999974 47899
Q ss_pred EEEEEEEeccCCcEEEEEEecCCchhhHHHHHHhhhccCccccCCcceeEeeceeEEEEEC-CCCChhHHHHHHHhcCCc
Q psy15216 1272 IEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNKNGGNLSKEGSVLFMFKHCGQLLFL-PNTKKNTLLDLALEKGAE 1350 (2602)
Q Consensus 1272 ~~~~ye~~~p~g~~~~v~~~tdn~~r~~~~~r~~~~k~~g~~~~~g~v~~~f~~~g~~~~~-~~~~~~~~~~~~~~~g~~ 1350 (2602)
++++|||||||||+|||||||||+|||+++||++|+|+||+||++|||+|||+|||+|.++ ...++|++||.|||+|||
T Consensus 79 ~~~~yEg~gP~Gvaiive~lTDN~nRt~~~ir~~~~K~gg~l~~~gsv~~~F~~kG~i~~~~~~~~~d~~~e~aIe~Gae 158 (234)
T PF01709_consen 79 EEITYEGYGPGGVAIIVECLTDNKNRTVSDIRSIFKKNGGSLGPSGSVSFMFERKGVIEVSKKDLDEDELMEDAIEAGAE 158 (234)
T ss_dssp EEEEEEEEETTTEEEEEEEEES-HHHHHHHHHHHHHTTT-EEE-TTSSGGGEEEEEEEEEEHCCS-HHHHHHHHHHHTES
T ss_pred eEEEEEEEcCCCcEEEEEEeCCCHhHHHHHHHHHHHHcCceeCCCCcceeeeeeeEEEEEEeCCCChHHHHHHHHhCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999998 578999999999999999
Q ss_pred eeeeccCceEEEEeCcccHHHHHHHHHhcCCCccccceeeeeceeeeccCCCCCCCHHHHHHHHH
Q psy15216 1351 DFLIDKDNKITIITSPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDATTPIDPRVVDKMIP 1415 (2602)
Q Consensus 1351 d~~~~~~~~~~~~~~~~~~~~v~~aL~~~g~~~~~~ei~~iP~~~v~L~~~~~~~~~~v~eal~~ 1415 (2602)
||+ ++|+.|+|+|+|++|.+|+++|++.|+++.++++.|+|.+++.++.........++++|++
T Consensus 159 Dve-~~d~~~~~~c~p~~~~~v~~~L~~~g~~i~~~e~~~~P~~~v~l~~e~~~~~~~lie~Lee 222 (234)
T PF01709_consen 159 DVE-EDDGEFEFICDPSDLSAVKKALEKKGYEIESAELEYIPNNPVELSEEDAEKVEKLIEALEE 222 (234)
T ss_dssp EEE-ECTSEEEEEEEGGGHHHHHHHHHHTT---SEEEEEEEESS-EE--HHHHHHHHHHHHHHHT
T ss_pred Eee-ecCCeEEEEECHHHHHHHHHHHHHcCCCeeEEEEEEeCCCCcccCHHHHHHHHHHHHHHhC
Confidence 996 5578899999999999999999999999999999999999888854333333333444433
|
This core region can be subdivided into three domains: a 3-helical bundle domain, and two alpha+beta domains with different folds, where domain 3 (ferredoxin-like fold) is inserted within domain 2. This core region is found in the following hypothetical proteins: YebC from Escherichia coli, HP0162 from Helicobacter pylori (Campylobacter pylori) and aq1575 from Aquifex aeolicus []. The crystal structure of a conserved hypothetical protein, Aq1575, from Aquifex aeolicus has been determined. A structural homology search reveals that this protein has a new fold with no obvious similarity to those of other proteins of known three-dimensional structure. The protein reveals a monomer consisting of three domains arranged along a pseudo threefold symmetry axis. There is a large cleft with approximate dimensions of 10 A x 10 A x 20 A in the centre of the three domains along the symmetry axis. Two possible active sites are suggested based on the structure and multiple sequence alignment. There are several highly conserved residues in these putative active sites [].; PDB: 1LFP_A 1MW7_A 1KON_A. |
| >KOG0104|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-52 Score=512.39 Aligned_cols=464 Identities=25% Similarity=0.349 Sum_probs=400.9
Q ss_pred CceEEEEEcCcccEEEEEEECCee-EEEeCCCCCccccEEEEEecCCcEEEcHHHHhhhccCCCCchhhhhhhhCCCCCC
Q psy15216 636 KCVSIGIDFGTTNSLVAIVRNNIP-EVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKN 714 (2602)
Q Consensus 636 ~~~vvGID~GTt~s~va~~~~~~~-~ii~~~~g~~~~PS~v~~~~~~~~~vG~~A~~~~~~~p~~~~~~~K~~lg~~~~~ 714 (2602)
...|++||+||-++.|+++.+|-| +|+.|...+|++|++|+|. ++++++|.+|.....++|+.+...++.++|+...+
T Consensus 21 ~~AvmsVDlGse~~Kv~vVkPGvPmeIvLn~esrRKtp~~vafk-~~eR~fg~~A~~ma~r~P~~~~~~l~~llgk~~~~ 99 (902)
T KOG0104|consen 21 ALAVMSVDLGSEWIKVAVVKPGVPMEIVLNKESRRKTPSIVAFK-GGERIFGEAAASMATRFPQSTYRQLKDLLGKSLDD 99 (902)
T ss_pred hhhheeeecccceeEEEEecCCCCeEEeechhhcccCcceEEec-CCceehhhhhhhhhhcCcHHHHHHHHHHhCcccCC
Confidence 346799999999999999999987 7888999999999999996 55799999999999999999999999999999887
Q ss_pred C-----CCCCCCeeeecC--CCceEEEEeC-ceeCHHHHHHHHHHHHHHHHHHhhcCccceEEEEEcCCCCHHHHHHHHH
Q psy15216 715 I-----NTNSFPYDFQNK--FGMLHIKTIS-GIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKN 786 (2602)
Q Consensus 715 ~-----~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~~~~ 786 (2602)
+ +....+|.++.. .+.+.+...+ ..|++|+++||+|.+.+..|+.+...+++++|||||.||++.||+++.+
T Consensus 100 ~~v~ly~~~~p~~e~v~d~~rstV~F~i~d~~~ysvEellAMil~~a~~~ae~~a~~~Ikd~ViTVP~~F~qaeR~all~ 179 (902)
T KOG0104|consen 100 PTVDLYQKRFPFFELVEDPQRSTVVFKISDQEEYSVEELLAMILQYAKSLAEEYAKQPIKDMVITVPPFFNQAERRALLQ 179 (902)
T ss_pred cHHHHHHhcCCceeecccCccceEEEEeCCccccCHHHHHHHHHHHHHHHHHHHHhcchhheEEeCCcccCHHHHHHHHH
Confidence 4 333556677633 5677777777 6899999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCceEEEechhHHHHHHhhhccC----cccceEEEEEeCCceEEEEEEEEE----------CCEEEEEEEecCCC
Q psy15216 787 AAKLAGLNVLRLLNEPTSAAIAYKLDKN----IFEGIFAVYDLGGGTFDISILKFK----------NGVFKVLSVGGDSN 852 (2602)
Q Consensus 787 Aa~~AGl~~~~li~EPtAAAl~y~~~~~----~~~~~vlV~D~GGGT~Dvsv~~~~----------~~~~~v~~~~g~~~ 852 (2602)
||++||++++.||||-+|||+.|++.+. ...++++|||+|.|++..+++.+. ...+++++.+.|..
T Consensus 180 Aa~iagl~vLqLind~~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~Ativsy~~v~~k~~g~~~p~i~~~gvGfd~t 259 (902)
T KOG0104|consen 180 AAQIAGLNVLQLINDGTAVALNYGVFRRKEINETPQHYIFYDMGSGSTSATIVSYQLVKTKEQGGKQPQIQVLGVGFDRT 259 (902)
T ss_pred HHHhcCchhhhhhccchHHHhhhhhhccccCCCCceEEEEEecCCCceeEEEEEEEeeccccccCccceEEEEeeccCCc
Confidence 9999999999999999999999998752 245799999999999999999984 14799999999999
Q ss_pred CcchHHHHHHHHHHHHHHhhcc-------CCHHHHHHHHHHHHHHHHHcccccceEEEEE-ecCCceEEEEeCHHHHHHH
Q psy15216 853 LGGDDFDYCLFSWIVKNAFLKK-------LSYKDVNILMIKSREIKELLSYQSSVKLNVK-LSDKKIVNITIDMKQFFTI 924 (2602)
Q Consensus 853 lGG~~~D~~l~~~l~~~~~~~~-------~~~~~~~~l~~~~e~~K~~LS~~~~~~~~i~-~~~~~~~~~~itr~~fe~l 924 (2602)
|||..|..+|.+|+...|.... .+++++.+|.++++++|..||.+..+...|+ +.++.|+..+|||++||++
T Consensus 260 LGG~e~~~rLr~~l~~~F~~~~k~~~dv~~nprAmaKl~keA~R~K~vLSANsea~aqIEsL~ddiDFr~kvTRe~fEel 339 (902)
T KOG0104|consen 260 LGGLEMTMRLRDHLANEFNEQHKTKKDVHTNPRAMAKLNKEAERLKQVLSANSEAFAQIESLIDDIDFRLKVTREEFEEL 339 (902)
T ss_pred cchHHHHHHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHhhccccccceeHHHHHHH
Confidence 9999999999999999987554 5789999999999999999999999999998 8899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCccccceEEEecCccchHHHHHHHHhhcc-CcccCcCCcchHhHHHHHHHhHHhcCCCC
Q psy15216 925 TQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFK-TTLLTSIDPDKAVVFGAAIQANFLSGNRG 1003 (2602)
Q Consensus 925 ~~~~~~~~~~~i~~~l~~a~~~~~~i~~V~LvGG~sr~P~v~~~l~~~f~-~~~~~~~~p~~aVa~GAa~~a~~l~~~~~ 1003 (2602)
|.++..++..+|.++|..++++..+|+.|+|.||+||+|.||+.|.++.+ .++.+.+|.|||+++||+++||.|+..++
T Consensus 340 c~Dl~~r~~~Pi~dAl~~a~l~ldeIn~ViL~Gg~TRVP~VQe~l~k~v~~~ei~knlNaDEA~vmGav~~aA~LSksFK 419 (902)
T KOG0104|consen 340 CADLEERIVEPINDALKKAQLSLDEINQVILFGGATRVPKVQETLIKAVGKEELGKNLNADEAAVMGAVYQAAHLSKSFK 419 (902)
T ss_pred HHHHHHhhhhhHHHHHHhcCCChhhhheeEEecCcccCchHHHHHHHHHhHHHHhcccChhHHHHHHHHHHHHhhccccc
Confidence 99999999999999999999999999999999999999999999999996 46788999999999999999999999998
Q ss_pred CCCceeeeccccccceEeeecc--------EEEEEEecCCCCCCCcEEEEEecccc-ccceeeeEeecCccccccCceee
Q psy15216 1004 IDDNFLLLDVIPLSLGIETIGG--------LVEKIIFRNTTIPCSYSGEFTTFKDN-QTAIAIKVVQGEDELVKNCQVLA 1074 (2602)
Q Consensus 1004 ~~~~~~~~dv~~~~~gi~~~~~--------~~~~ii~~~t~iP~~~~~~~~~~~d~-q~~~~i~i~~ge~~~~~~~~~lg 1074 (2602)
+.+ +.+.|.++++|-++..+. ....++++|.++|.....+|+-.+|+ ...+.+..+. ..+.
T Consensus 420 vKp-f~V~D~~~yp~~v~f~~~~~i~~~k~~~~~lf~~~~~yPnk~vi~~~~ysddf~~~~n~~~~~---------~nl~ 489 (902)
T KOG0104|consen 420 VKP-FNVVDASVYPYLVEFETEPGIHALKSVKRDLFARMSPYPNKKVITFTSYSDDFPFNINYGDLG---------QNLT 489 (902)
T ss_pred ccc-eeeeecccccEEEEeccCCcccccchhHHHHHhcCCcCCCcceeeccccCCccccccchhhhc---------cCcc
Confidence 665 899999999888865432 23368999999998876666544432 2222222221 2345
Q ss_pred eeEecCCCCC----CC---CccEEEEEEEECCCeeEEEEEEEe
Q psy15216 1075 NFELRDIPPM----PA---GRARIKVTYQVDADGLLSIFAYEK 1110 (2602)
Q Consensus 1075 ~~~l~~i~~~----~~---g~~~i~v~f~~d~~g~l~v~a~~~ 1110 (2602)
+|+++|+... +. ...-|.++|.+|..|++.|+-.+.
T Consensus 490 ~velsgV~d~~kk~~~~~~~~KGIk~~F~~D~Sgi~~v~~~ev 532 (902)
T KOG0104|consen 490 TVELSGVKDALKKNSYSDSESKGIKASFSLDLSGIVLVSRVEV 532 (902)
T ss_pred EEEEecchHHHHhcccchhhccCceEEEEEcCcCceEEeeeeE
Confidence 7778777632 11 123399999999999999876543
|
|
| >PRK11678 putative chaperone; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-50 Score=511.19 Aligned_cols=332 Identities=24% Similarity=0.293 Sum_probs=288.5
Q ss_pred EEEEEcCcccEEEEEEECCeeEEEeCCCCCccccEEEEEe----------------------------------------
Q psy15216 639 SIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYL---------------------------------------- 678 (2602)
Q Consensus 639 vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~v~~~---------------------------------------- 678 (2602)
++|||||||||+||++++|+|+++++..|.+.+||+|+|.
T Consensus 2 ~iGID~GTtNs~va~~~~~~~~li~~~~~~~~~pS~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (450)
T PRK11678 2 FIGFDYGTANCSVAVMRDGKPRLLPLENDSTYLPSTLCAPTREAVSEWLYRHLDVPAYDDERQALLRRAIRYNREEDIDV 81 (450)
T ss_pred eEEEecCccceeeEEeeCCceEEEEcCCCCCcCCeeeeccCchhhhhhhhhhcccCcccchhhhhhhhhhhhcccccccc
Confidence 5899999999999999999999999999999999999995
Q ss_pred cCCcEEEcHHHHhhhccCCCCc--hhhhhhhhCCCCCCCCCCCCCeeeecCCCceEEEEeCceeCHHHHHHHHHHHHHHH
Q psy15216 679 PDGKIYVGKKAKITQNIDPKNT--ISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKI 756 (2602)
Q Consensus 679 ~~~~~~vG~~A~~~~~~~p~~~--~~~~K~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~ 756 (2602)
.++++++|..|++++..+|.++ +.++||+||...-. . .....++++++++|++||+.
T Consensus 82 ~~~~~~~G~~A~~~~~~~p~~~r~i~s~Kr~lg~~~~~---------~------------~~~~~~e~l~a~iL~~lk~~ 140 (450)
T PRK11678 82 TAQSVFFGLAALAQYLEDPEEVYFVKSPKSFLGASGLK---------P------------QQVALFEDLVCAMMLHIKQQ 140 (450)
T ss_pred cccccchhHHHHHhhccCCCCceEEecchhhhccCCCC---------c------------cceeCHHHHHHHHHHHHHHH
Confidence 3456899999999999999998 77999999975211 0 12234899999999999999
Q ss_pred HHHhhcCccceEEEEEcCCCC-----HHHHHH---HHHHHHHcCCceEEEechhHHHHHHhhhccCcccceEEEEEeCCc
Q psy15216 757 AENAVNNRIFGAVITVPAYFN-----DIQRQF---TKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGG 828 (2602)
Q Consensus 757 a~~~~~~~~~~~ViTVPa~f~-----~~qr~~---~~~Aa~~AGl~~~~li~EPtAAAl~y~~~~~~~~~~vlV~D~GGG 828 (2602)
++.++|.++.++|||||++|+ +.||++ +++||+.|||+++++++||+|||++|+.... .++.+||||+|||
T Consensus 141 ae~~~g~~v~~~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~~-~~~~vlV~D~GGG 219 (450)
T PRK11678 141 AEAQLQAAITQAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATLT-EEKRVLVVDIGGG 219 (450)
T ss_pred HHHHhCCCCCcEEEEECCccccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhccccC-CCCeEEEEEeCCC
Confidence 999999999999999999998 788776 6999999999999999999999999986543 5678999999999
Q ss_pred eEEEEEEEEECC-------EEEEEEEecCCCCcchHHHHHHH-HHHHHHHhhcc--------------------------
Q psy15216 829 TFDISILKFKNG-------VFKVLSVGGDSNLGGDDFDYCLF-SWIVKNAFLKK-------------------------- 874 (2602)
Q Consensus 829 T~Dvsv~~~~~~-------~~~v~~~~g~~~lGG~~~D~~l~-~~l~~~~~~~~-------------------------- 874 (2602)
|||+||+++.++ ..+|+++.| ..+||+|||.+|+ +++...|....
T Consensus 220 T~D~Svv~~~~~~~~~~~r~~~vla~~G-~~lGG~DfD~~L~~~~~~~~fg~~~~~~~g~~~p~~~~~~~~~~~~i~~~~ 298 (450)
T PRK11678 220 TTDCSMLLMGPSWRGRADRSASLLGHSG-QRIGGNDLDIALAFKQLMPLLGMGSETEKGIALPSLPFWNAVAINDVPAQS 298 (450)
T ss_pred eEEEEEEEecCcccccCCcceeEEecCC-CCCChHHHHHHHHHHHHHHHhhhchhhccCCcCcchhhhhhhhhhccchhh
Confidence 999999999654 468999998 6899999999998 56766553110
Q ss_pred ------------------CCHHHH------------HHHHHHHHHHHHHcccccceEEEEEecCCceEEEEeCHHHHHHH
Q psy15216 875 ------------------LSYKDV------------NILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITIDMKQFFTI 924 (2602)
Q Consensus 875 ------------------~~~~~~------------~~l~~~~e~~K~~LS~~~~~~~~i~~~~~~~~~~~itr~~fe~l 924 (2602)
.+++.+ .+|+.+||++|+.||.+.++.+.++..+ .++..+|||++|+++
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~p~~~~rl~~l~~~~~~~~L~~~aE~aK~~LS~~~~a~i~~~~~~-~~~~~~ItR~efe~i 377 (450)
T PRK11678 299 DFYSLANGRLLNDLIRDAREPEKVARLLKVWRQRLSYRLVRSAEEAKIALSDQAETRASLDFIS-DGLATEISQQGLEEA 377 (450)
T ss_pred hhhhhhhHHHHHHHhhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHcCCCCceEEEecccC-CCcceeeCHHHHHHH
Confidence 122222 3688999999999999999998887543 457899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCccccceEEEecCccchHHHHHHHHhhccCcccCcCCcchHhHHHHHHHhHH
Q psy15216 925 TQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANF 997 (2602)
Q Consensus 925 ~~~~~~~~~~~i~~~l~~a~~~~~~i~~V~LvGG~sr~P~v~~~l~~~f~~~~~~~~~p~~aVa~GAa~~a~~ 997 (2602)
++++++++..+++++|+++++. ++.|+||||+|+||.|++.|++.||.......+|.++||.|+|++|..
T Consensus 378 i~~~l~ri~~~i~~~L~~a~~~---~d~VvLvGGsSriP~V~~~l~~~fg~~~v~~g~~~~sVa~Gla~~a~~ 447 (450)
T PRK11678 378 ISQPLARILELVQLALDQAQVK---PDVIYLTGGSARSPLIRAALAQQLPGIPIVGGDDFGSVTAGLARWAQV 447 (450)
T ss_pred HHHHHHHHHHHHHHHHHHcCCC---CCEEEEcCcccchHHHHHHHHHHCCCCcEEeCCCcchHHHHHHHHHHh
Confidence 9999999999999999999975 578999999999999999999999877777889999999999999864
|
|
| >KOG0104|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-50 Score=488.26 Aligned_cols=462 Identities=25% Similarity=0.361 Sum_probs=394.5
Q ss_pred cceEEEEEcCcccEEEEEEECCeE-EEEeCCCCCccccEEEEEecCCcEEecHHHHhhhccCCCCchhhhhhhcCCCCCC
Q psy15216 2032 KCVSIGIDFGTTNSLVAIVRNNIP-EVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKN 2110 (2602)
Q Consensus 2032 ~~~vvGIDfGTt~s~va~~~~g~~-~ii~~~~g~~~~PS~v~~~~~~~~~vG~~A~~~~~~~p~~~~~~~K~~lg~~~~~ 2110 (2602)
...|++||+||-++.|+++.+|-| +|+.|....|++|++|+| +++++++|..|.....++|+.+...+|.++|+...+
T Consensus 21 ~~AvmsVDlGse~~Kv~vVkPGvPmeIvLn~esrRKtp~~vaf-k~~eR~fg~~A~~ma~r~P~~~~~~l~~llgk~~~~ 99 (902)
T KOG0104|consen 21 ALAVMSVDLGSEWIKVAVVKPGVPMEIVLNKESRRKTPSIVAF-KGGERIFGEAAASMATRFPQSTYRQLKDLLGKSLDD 99 (902)
T ss_pred hhhheeeecccceeEEEEecCCCCeEEeechhhcccCcceEEe-cCCceehhhhhhhhhhcCcHHHHHHHHHHhCcccCC
Confidence 345899999999999999999977 788899999999999999 578899999999999999999999999999999877
Q ss_pred CC-----CCCCCeeeecC--CCceEEEecC-ceeCHHHHHHHHHHHHHHHHHHhhccccceEEEeeCCCCCHHHHHHHHH
Q psy15216 2111 IN-----TNSFPYDFQNK--FGMLHIKTIS-GIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKN 2182 (2602)
Q Consensus 2111 ~~-----~~~~~~~~~~~--~g~~~~~~~~-~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~l~~ 2182 (2602)
+. ....++.+..+ .+.+.+...+ ..|+++++++|+|.+.+..|+.+...+++++|||||.+|++.||+++.+
T Consensus 100 ~~v~ly~~~~p~~e~v~d~~rstV~F~i~d~~~ysvEellAMil~~a~~~ae~~a~~~Ikd~ViTVP~~F~qaeR~all~ 179 (902)
T KOG0104|consen 100 PTVDLYQKRFPFFELVEDPQRSTVVFKISDQEEYSVEELLAMILQYAKSLAEEYAKQPIKDMVITVPPFFNQAERRALLQ 179 (902)
T ss_pred cHHHHHHhcCCceeecccCccceEEEEeCCccccCHHHHHHHHHHHHHHHHHHHHhcchhheEEeCCcccCHHHHHHHHH
Confidence 52 22334455443 4666676666 6799999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCceeEeechhHHHHHHhhhccC----CCCceEEEEEeCCceEEEEEEEEe------C----CEEEEEEEecCCC
Q psy15216 2183 AAKLAGLNVLRLLNEPTSAAIAYKLDKN----IFEGIFAVYDLGGGTFDISILKFK------N----GVFKVLSVGGDSN 2248 (2602)
Q Consensus 2183 Aa~~AGl~~~~li~EP~AAAl~y~~~~~----~~~~~vlV~D~GGGT~Dvsv~~~~------~----~~~~v~~~~g~~~ 2248 (2602)
|+++||++++.||+|-+|||+.|++.+. ...++++|||+|.|++.++++.+. . ..+++++.+.|..
T Consensus 180 Aa~iagl~vLqLind~~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~Ativsy~~v~~k~~g~~~p~i~~~gvGfd~t 259 (902)
T KOG0104|consen 180 AAQIAGLNVLQLINDGTAVALNYGVFRRKEINETPQHYIFYDMGSGSTSATIVSYQLVKTKEQGGKQPQIQVLGVGFDRT 259 (902)
T ss_pred HHHhcCchhhhhhccchHHHhhhhhhccccCCCCceEEEEEecCCCceeEEEEEEEeeccccccCccceEEEEeeccCCc
Confidence 9999999999999999999999998752 345699999999999999999984 1 4799999999999
Q ss_pred CchhHHHHHHHHHHHHHHhhhcC--------ChhHHHHHHHHHHHHHHHhcccceEEEEEE-ecCCceEEEEcCHHHHHH
Q psy15216 2249 LGGDDFDYCLFSWIVKNAFLKKL--------SYKDVNILMIKSREIKELLSYQSSVKLNVK-LSDKKIVNITIDMKQFFT 2319 (2602)
Q Consensus 2249 lGG~~~D~~l~~~l~~~~~~~~~--------~~~~~~~l~~~~e~~K~~ls~~~~~~~~i~-~~~~~~~~~~itr~~fe~ 2319 (2602)
|||..|..+|.+|+... |.+.+ ..+++.+|.++++++|..||.+.++..+|+ +.++.|+..+|||++||+
T Consensus 260 LGG~e~~~rLr~~l~~~-F~~~~k~~~dv~~nprAmaKl~keA~R~K~vLSANsea~aqIEsL~ddiDFr~kvTRe~fEe 338 (902)
T KOG0104|consen 260 LGGLEMTMRLRDHLANE-FNEQHKTKKDVHTNPRAMAKLNKEAERLKQVLSANSEAFAQIESLIDDIDFRLKVTREEFEE 338 (902)
T ss_pred cchHHHHHHHHHHHHHH-HHHhcCCccccccCHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHhhccccccceeHHHHHH
Confidence 99999999999999987 44332 246788999999999999999999999988 889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCccccceEEEEeCccchHHHHHHHHhhcCC-cccCCCCccchhhhHHHHHhHHhcCCC
Q psy15216 2320 ITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKT-TLLTSIDPDKAVVFGAAIQANFLSGNR 2398 (2602)
Q Consensus 2320 l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~-~~~~~~~p~~aVa~GAa~~a~~~~~~~ 2398 (2602)
+|.++..++..+|.++|..++++..+|+.|+|.||+||+|.||+.|.++.+. ++....|.|||++.||+++|+.|+..+
T Consensus 339 lc~Dl~~r~~~Pi~dAl~~a~l~ldeIn~ViL~Gg~TRVP~VQe~l~k~v~~~ei~knlNaDEA~vmGav~~aA~LSksF 418 (902)
T KOG0104|consen 339 LCADLEERIVEPINDALKKAQLSLDEINQVILFGGATRVPKVQETLIKAVGKEELGKNLNADEAAVMGAVYQAAHLSKSF 418 (902)
T ss_pred HHHHHHHhhhhhHHHHHHhcCCChhhhheeEEecCcccCchHHHHHHHHHhHHHHhcccChhHHHHHHHHHHHHhhcccc
Confidence 9999999999999999999999999999999999999999999999999974 688899999999999999999999999
Q ss_pred CCCCceeeeccccccceEEeecc--------EEEEEEecCCcCCCCcEEEEEeeccc-ccceeEEEeecCcccccCCcee
Q psy15216 2399 GIDDNFLLLDVIPLSLGIETIGG--------LVEKIIFRNTTIPCSYSGEFTTFKDN-QTAIAIKVVQGEDELVKNCQVL 2469 (2602)
Q Consensus 2399 ~~~~~~~~~d~~~~~~gi~~~~~--------~~~~ii~k~t~iP~~~~~~~~~~~d~-q~~~~i~i~~ge~~~~~~~~~l 2469 (2602)
++.+ +.+.|.+.++|-++.... ....++.+|.++|.....+|+-..|+ ...+++..++ .-+
T Consensus 419 KvKp-f~V~D~~~yp~~v~f~~~~~i~~~k~~~~~lf~~~~~yPnk~vi~~~~ysddf~~~~n~~~~~---------~nl 488 (902)
T KOG0104|consen 419 KVKP-FNVVDASVYPYLVEFETEPGIHALKSVKRDLFARMSPYPNKKVITFTSYSDDFPFNINYGDLG---------QNL 488 (902)
T ss_pred cccc-eeeeecccccEEEEeccCCcccccchhHHHHHhcCCcCCCcceeeccccCCccccccchhhhc---------cCc
Confidence 9988 999999999998875442 23458999999998876666654443 2222222222 123
Q ss_pred EEEEeeCCCCCCCC-------ccEEEEEEEEcCCccEEEEEEe
Q psy15216 2470 ANFELRDIPPMPAG-------RARIKVTYQVDADGLLSIFAYE 2505 (2602)
Q Consensus 2470 g~~~l~~~~~~~~g-------~~~i~v~f~id~~g~l~V~a~~ 2505 (2602)
..+.++++...-+. ..-|.+.|.+|.+|++.|+-.+
T Consensus 489 ~~velsgV~d~~kk~~~~~~~~KGIk~~F~~D~Sgi~~v~~~e 531 (902)
T KOG0104|consen 489 TTVELSGVKDALKKNSYSDSESKGIKASFSLDLSGIVLVSRVE 531 (902)
T ss_pred cEEEEecchHHHHhcccchhhccCceEEEEEcCcCceEEeeee
Confidence 46777766632111 1239999999999999986544
|
|
| >PRK11678 putative chaperone; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-48 Score=495.02 Aligned_cols=332 Identities=24% Similarity=0.295 Sum_probs=286.0
Q ss_pred EEEEEcCcccEEEEEEECCeEEEEeCCCCCccccEEEEEe----------------------------------------
Q psy15216 2035 SIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYL---------------------------------------- 2074 (2602)
Q Consensus 2035 vvGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~---------------------------------------- 2074 (2602)
++|||||||||+||++++|+|+++++..|.+.+||+|+|.
T Consensus 2 ~iGID~GTtNs~va~~~~~~~~li~~~~~~~~~pS~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (450)
T PRK11678 2 FIGFDYGTANCSVAVMRDGKPRLLPLENDSTYLPSTLCAPTREAVSEWLYRHLDVPAYDDERQALLRRAIRYNREEDIDV 81 (450)
T ss_pred eEEEecCccceeeEEeeCCceEEEEcCCCCCcCCeeeeccCchhhhhhhhhhcccCcccchhhhhhhhhhhhcccccccc
Confidence 6999999999999999999999999999999999999994
Q ss_pred cCCcEEecHHHHhhhccCCCCc--hhhhhhhcCCCCCCCCCCCCCeeeecCCCceEEEecCceeCHHHHHHHHHHHHHHH
Q psy15216 2075 PDGKIYVGKKAKITQNIDPKNT--ISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKI 2152 (2602)
Q Consensus 2075 ~~~~~~vG~~A~~~~~~~p~~~--~~~~K~~lg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ev~a~~L~~l~~~ 2152 (2602)
.+++.++|..|+.++..+|.++ +.++||+||...... .....++++++++|++||+.
T Consensus 82 ~~~~~~~G~~A~~~~~~~p~~~r~i~s~Kr~lg~~~~~~---------------------~~~~~~e~l~a~iL~~lk~~ 140 (450)
T PRK11678 82 TAQSVFFGLAALAQYLEDPEEVYFVKSPKSFLGASGLKP---------------------QQVALFEDLVCAMMLHIKQQ 140 (450)
T ss_pred cccccchhHHHHHhhccCCCCceEEecchhhhccCCCCc---------------------cceeCHHHHHHHHHHHHHHH
Confidence 3456789999999999999988 779999999753210 12234899999999999999
Q ss_pred HHHhhccccceEEEeeCCCCC-----HHHHHH---HHHHHHHcCCceeEeechhHHHHHHhhhccCCCCceEEEEEeCCc
Q psy15216 2153 AENAVNNRIFGAVITVPAYFN-----DIQRQF---TKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGG 2224 (2602)
Q Consensus 2153 a~~~~~~~~~~~ViTVPa~f~-----~~qr~~---l~~Aa~~AGl~~~~li~EP~AAAl~y~~~~~~~~~~vlV~D~GGG 2224 (2602)
++.++|.++.++|||||++|+ +.||++ +++||+.|||+++++++||+|||++|+.... .++.+||||+|||
T Consensus 141 ae~~~g~~v~~~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~~-~~~~vlV~D~GGG 219 (450)
T PRK11678 141 AEAQLQAAITQAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATLT-EEKRVLVVDIGGG 219 (450)
T ss_pred HHHHhCCCCCcEEEEECCccccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhccccC-CCCeEEEEEeCCC
Confidence 999999999999999999998 778766 7999999999999999999999999986543 4678999999999
Q ss_pred eEEEEEEEEeCC-------EEEEEEEecCCCCchhHHHHHHH-HHHHHHHhhhc--------------------------
Q psy15216 2225 TFDISILKFKNG-------VFKVLSVGGDSNLGGDDFDYCLF-SWIVKNAFLKK-------------------------- 2270 (2602)
Q Consensus 2225 T~Dvsv~~~~~~-------~~~v~~~~g~~~lGG~~~D~~l~-~~l~~~~~~~~-------------------------- 2270 (2602)
|||+||+++.++ ..+|+++.| ..+||+|||.+|+ +++... |.+.
T Consensus 220 T~D~Svv~~~~~~~~~~~r~~~vla~~G-~~lGG~DfD~~L~~~~~~~~-fg~~~~~~~g~~~p~~~~~~~~~~~~i~~~ 297 (450)
T PRK11678 220 TTDCSMLLMGPSWRGRADRSASLLGHSG-QRIGGNDLDIALAFKQLMPL-LGMGSETEKGIALPSLPFWNAVAINDVPAQ 297 (450)
T ss_pred eEEEEEEEecCcccccCCcceeEEecCC-CCCChHHHHHHHHHHHHHHH-hhhchhhccCCcCcchhhhhhhhhhccchh
Confidence 999999999654 468999998 6899999999998 455543 2100
Q ss_pred -------C------------ChhHH------------HHHHHHHHHHHHHhcccceEEEEEEecCCceEEEEcCHHHHHH
Q psy15216 2271 -------L------------SYKDV------------NILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITIDMKQFFT 2319 (2602)
Q Consensus 2271 -------~------------~~~~~------------~~l~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~itr~~fe~ 2319 (2602)
. ..... .+|+.+||++|+.||..+++.+.++..+ ..+.++|||++|++
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~p~~~~rl~~l~~~~~~~~L~~~aE~aK~~LS~~~~a~i~~~~~~-~~~~~~ItR~efe~ 376 (450)
T PRK11678 298 SDFYSLANGRLLNDLIRDAREPEKVARLLKVWRQRLSYRLVRSAEEAKIALSDQAETRASLDFIS-DGLATEISQQGLEE 376 (450)
T ss_pred hhhhhhhhHHHHHHHhhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHcCCCCceEEEecccC-CCcceeeCHHHHHH
Confidence 0 00011 2578899999999999999998887543 34789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCccccceEEEEeCccchHHHHHHHHhhcCCcccCCCCccchhhhHHHHHhHHh
Q psy15216 2320 ITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFL 2394 (2602)
Q Consensus 2320 l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~aVa~GAa~~a~~~ 2394 (2602)
+++++++++.++++++|+++++. ++.|+||||+|+||.|++.|++.||.......+|.++||.|+|++|..+
T Consensus 377 ii~~~l~ri~~~i~~~L~~a~~~---~d~VvLvGGsSriP~V~~~l~~~fg~~~v~~g~~~~sVa~Gla~~a~~~ 448 (450)
T PRK11678 377 AISQPLARILELVQLALDQAQVK---PDVIYLTGGSARSPLIRAALAQQLPGIPIVGGDDFGSVTAGLARWAQVV 448 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCC---CCEEEEcCcccchHHHHHHHHHHCCCCcEEeCCCcchHHHHHHHHHHhh
Confidence 99999999999999999999875 4789999999999999999999998777778899999999999999643
|
|
| >COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-47 Score=457.59 Aligned_cols=366 Identities=58% Similarity=0.901 Sum_probs=347.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhc--
Q psy15216 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGA-- 78 (2602)
Q Consensus 1 Ld~a~~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l-- 78 (2602)
|||++++|+.+.++++|..++...|+||.+ .|.+|+.+...++++|+.+|+++|+++++|+||+|+||++++++.+.
T Consensus 5 lD~~ATTp~~~~v~~~m~~~~~~~fgNPsS-~H~~G~~A~~~ve~AR~~iA~llga~~~eIiFTSG~TEsnNlaI~g~~~ 83 (386)
T COG1104 5 LDNAATTPVDPEVLEAMLPYLTEVFGNPSS-LHSFGREARKAVEEAREQIAKLLGADPEEIIFTSGATESNNLAIKGAAL 83 (386)
T ss_pred ccccccCCCCHHHHHHHHHHHHhhcCCccc-hhHhHHHHHHHHHHHHHHHHHHhCCCCCeEEEecCCcHHHHHHHHhhHH
Confidence 799999999999999999999999999998 99999999999999999999999999999999999999999999984
Q ss_pred ccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHH
Q psy15216 79 AHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEI 158 (2602)
Q Consensus 79 ~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I 158 (2602)
.....+.|.+|+++..+|+++...++++++.|.++.+++++.+|.+|+++|+++|+++|.+|++.++||.||++.|+++|
T Consensus 84 a~~~~~~~~HIIts~iEH~aVl~~~~~Le~~g~~Vtyl~V~~~G~v~~e~L~~al~~~T~LVSim~aNnE~G~IQpI~ei 163 (386)
T COG1104 84 AYRNAQKGKHIITSAIEHPAVLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEALRPDTILVSIMHANNETGTIQPIAEI 163 (386)
T ss_pred hhhcccCCCeEEEcccccHHHHHHHHHHHhcCCeEEEeCCCCCCeEcHHHHHHhcCCCceEEEEEecccCeeecccHHHH
Confidence 31112368899999999999999999998889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCEEEEecccccccccccCCCCCccEEEeccccccCCCCcEEEEEecCCCCcccceecCCCccccccccCcch
Q psy15216 159 GELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLAT 238 (2602)
Q Consensus 159 ~~la~~~g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K~~Gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~ 238 (2602)
+++|+++++++|+|++|++|..|+|+..+++|++.+|.||++||.|+|+||+++. -++.|.+.||++++++++||.|+
T Consensus 164 ~~i~k~~~i~fHvDAvQa~Gkipi~~~~~~vD~ls~SaHK~~GpkGiGaLyv~~~--~~~~p~i~GGgQE~g~RsGTenv 241 (386)
T COG1104 164 GEICKERGILFHVDAVQAVGKIPIDLEELGVDLLSFSAHKFGGPKGIGALYVRPG--VRLEPLIHGGGQERGLRSGTENV 241 (386)
T ss_pred HHHHHHcCCeEEEehhhhcCceeccccccCcceEEeehhhccCCCceEEEEECCC--CccCceeccCcCCCCCCCCCccH
Confidence 9999999999999999999999999999999999999999999999999999764 56889999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcccChhHHHHHh--CCeEEc
Q psy15216 239 HQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDIAVS 316 (2602)
Q Consensus 239 ~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~v~ 316 (2602)
++++++..|++...+.++....+...++++|.+.|.+.+|.+.+.+.+.++.|+.+++.|++.+++.++..| +||.++
T Consensus 242 ~~Ivg~~~A~~~a~~~~~~~~~~~~~lr~~l~~~l~~~~p~~~~~g~~~~rlP~~~~~~f~gv~gE~ll~~L~~~gI~vS 321 (386)
T COG1104 242 PGIVGFGKAAEIAVEELEEENARLRKLRDRLEDGLLEIIPDVYLNGDDEPRLPNILNFSFPGVEGESLLLALDLAGIAVS 321 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEcCCcccCCCCeEEEEeCCCcHHHHHHhccccCeEEe
Confidence 999999999998888889999999999999999999867999999888889999999999999999999888 599999
Q ss_pred ccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 317 SGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 317 ~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
.|++|+.+...|++++.++|.+++.+++.||||++.+||++|+++++++|++.
T Consensus 322 tGSACsS~~~~pShVL~AmG~~~e~a~~siR~S~g~~tt~eei~~~~~~l~~~ 374 (386)
T COG1104 322 TGSACSSGSLEPSHVLRAMGISEELAHGSIRFSLGRFTTEEEIDAAAEALKEI 374 (386)
T ss_pred ccccccCCCCCccHHHHHcCCChHHhCccEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999963
|
|
| >COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-46 Score=447.02 Aligned_cols=368 Identities=58% Similarity=0.902 Sum_probs=346.6
Q ss_pred eeecc-CCCCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHh
Q psy15216 1395 NIVFK-DATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKG 1473 (2602)
Q Consensus 1395 ~v~L~-~~~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~ 1473 (2602)
++|+| +++++..+++++++..+++..++||++ .|.+|+.....++++|+.+|+++|+++++|+||+|+||++|+++.+
T Consensus 2 miYlD~~ATTp~~~~v~~~m~~~~~~~fgNPsS-~H~~G~~A~~~ve~AR~~iA~llga~~~eIiFTSG~TEsnNlaI~g 80 (386)
T COG1104 2 MIYLDNAATTPVDPEVLEAMLPYLTEVFGNPSS-LHSFGREARKAVEEAREQIAKLLGADPEEIIFTSGATESNNLAIKG 80 (386)
T ss_pred cccccccccCCCCHHHHHHHHHHHHhhcCCccc-hhHhHHHHHHHHHHHHHHHHHHhCCCCCeEEEecCCcHHHHHHHHh
Confidence 57887 567899999999999999999999999 8999999999999999999999999999999999999999999998
Q ss_pred hhhhh--ccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccCCceEEEEeccccccccccCh
Q psy15216 1474 AAHFY--KKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPI 1551 (2602)
Q Consensus 1474 l~~~~--~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l 1551 (2602)
..... .+.|.+|+++..+|+++...+++++..|.++.+++++.+|.+|+++|+++|+++|.+|.+.++||.+|+++|+
T Consensus 81 ~~~a~~~~~~~~HIIts~iEH~aVl~~~~~Le~~g~~Vtyl~V~~~G~v~~e~L~~al~~~T~LVSim~aNnE~G~IQpI 160 (386)
T COG1104 81 AALAYRNAQKGKHIITSAIEHPAVLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEALRPDTILVSIMHANNETGTIQPI 160 (386)
T ss_pred hHHhhhcccCCCeEEEcccccHHHHHHHHHHHhcCCeEEEeCCCCCCeEcHHHHHHhcCCCceEEEEEecccCeeecccH
Confidence 53222 2368899999999999999999998889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCEEEEecccccCcccccCCCCCccEEEEccccccCCCceEEEEEecCCCCccccccccCCccccCCCCC
Q psy15216 1552 LEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGT 1631 (2602)
Q Consensus 1552 ~~I~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K~~gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt 1631 (2602)
++|.++|+++|+++|+|++|++|.+|+++..+++|++++|.||++||.|+|+||+++. -.+.|.+.||+++.++++||
T Consensus 161 ~ei~~i~k~~~i~fHvDAvQa~Gkipi~~~~~~vD~ls~SaHK~~GpkGiGaLyv~~~--~~~~p~i~GGgQE~g~RsGT 238 (386)
T COG1104 161 AEIGEICKERGILFHVDAVQAVGKIPIDLEELGVDLLSFSAHKFGGPKGIGALYVRPG--VRLEPLIHGGGQERGLRSGT 238 (386)
T ss_pred HHHHHHHHHcCCeEEEehhhhcCceeccccccCcceEEeehhhccCCCceEEEEECCC--CccCceeccCcCCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999764 46788999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecCCcHHHHHhc--CCE
Q psy15216 1632 LATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDI 1709 (2602)
Q Consensus 1632 ~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI 1709 (2602)
.++++++++..|++.....++....+...+++++.+.|.+.+|++.+.+.+..+.|+..++.|++.+++.++..| +||
T Consensus 239 env~~Ivg~~~A~~~a~~~~~~~~~~~~~lr~~l~~~l~~~~p~~~~~g~~~~rlP~~~~~~f~gv~gE~ll~~L~~~gI 318 (386)
T COG1104 239 ENVPGIVGFGKAAEIAVEELEEENARLRKLRDRLEDGLLEIIPDVYLNGDDEPRLPNILNFSFPGVEGESLLLALDLAGI 318 (386)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEcCCcccCCCCeEEEEeCCCcHHHHHHhccccCe
Confidence 999999999999998888889999999999999999999867999999888889999999999999999998888 599
Q ss_pred EEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1710 AVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1710 ~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
.++.|+.|..+...|++++..+|.+++.+++.||||++.+||++|++++++.|++.
T Consensus 319 ~vStGSACsS~~~~pShVL~AmG~~~e~a~~siR~S~g~~tt~eei~~~~~~l~~~ 374 (386)
T COG1104 319 AVSTGSACSSGSLEPSHVLRAMGISEELAHGSIRFSLGRFTTEEEIDAAAEALKEI 374 (386)
T ss_pred EEeccccccCCCCCccHHHHHcCCChHHhCccEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 99999999999899999999999999999999999999999999999999999973
|
|
| >COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-43 Score=442.27 Aligned_cols=356 Identities=30% Similarity=0.467 Sum_probs=324.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCC-CcEEEeCCHHHHHHHHHHhcc
Q psy15216 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADP-REIIWTSGATESNNLAIKGAA 79 (2602)
Q Consensus 1 Ld~a~~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~-~~Iv~t~g~T~al~~~~~~l~ 79 (2602)
||++++++.|..|++++.+++...++|++++.|..+......++++|+.+|+++|+++ ++|+||.|+|+|+++++.++.
T Consensus 26 lD~aa~~~~p~~V~~a~~~~~~~~~an~~r~~~~~~~~~t~~~e~aRe~va~~~~a~~~~eIvft~~tT~aln~va~~l~ 105 (405)
T COG0520 26 LDNAATSQKPQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFLNADSSDEIVFTRGTTEALNLVARGLG 105 (405)
T ss_pred ecCcccccCCHHHHHHHHHHHHhhcCCcCcccchHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCChhHHHHHHHHHhh
Confidence 7999999999999999999999999999999999999999999999999999999985 899999999999999999995
Q ss_pred cccccCCCEEEEcCCCCcccHHHHHHHH-hCCcEEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHH
Q psy15216 80 HFYKKRGKHIITVQTEHKSVLDSIRKLE-NDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEI 158 (2602)
Q Consensus 80 ~~~~~~gd~Vlv~~~~~~s~~~~~~~~~-~~G~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I 158 (2602)
.. +++||+|++++.+|+++..+|+.+. +.|++++++++++++.+++++++.+++++||+|.++|++|.||++.|+++|
T Consensus 106 ~~-~~~gdeIv~s~~EH~sn~~pw~~~~~~~Ga~v~~i~~~~~g~~~~~~~~~~i~~~Tklvais~vSn~tG~~~pv~~I 184 (405)
T COG0520 106 RS-LKPGDEIVVSDLEHHSNIVPWQELAKRTGAKVRVIPLDDDGLLDLDALEKLITPKTKLVALSHVSNVTGTVNPVKEI 184 (405)
T ss_pred hh-hcCCCEEEEccCcchhhHHHHHHHHHhcCcEEEEEecCCCCCcCHHHHHHhcCCCceEEEEECccccccccchHHHH
Confidence 32 4799999999999999999999984 569999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCEEEEecccccccccccCCCCCccEEEecccc-ccCCCCcEEEEEecCCCCcccceecCCCc----------
Q psy15216 159 GELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGH---------- 227 (2602)
Q Consensus 159 ~~la~~~g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K-~~Gp~G~G~l~~~~~~~~~l~~~~~g~~~---------- 227 (2602)
+++||++|++++||++|++|+.++|++++++||+++|+|| ++||.|+|+||+++++.+.+.|...||++
T Consensus 185 ~~la~~~ga~v~VDaaq~~~h~~idv~~l~~Df~afsgHKwl~gP~GiGvLy~r~~~l~~l~P~~~gg~~~~~~~~~~~~ 264 (405)
T COG0520 185 AELAHEHGALVLVDAAQAAGHLPIDVQELGCDFLAFSGHKWLLGPTGIGVLYVRKELLEELEPFLGGGGMIEYVSRDEGV 264 (405)
T ss_pred HHHHHHcCCEEEEECccccCccCCCchhcCCCEEEEcccccccCCCceEEEEEchHHHhhcCCcccCCCceeeecccccc
Confidence 9999999999999999999999999999999999999999 89999999999999999999988877643
Q ss_pred -----cccccccCcchhHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEccc
Q psy15216 228 -----EYGLRSGTLATHQIVGMGEAFRLAR-IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI 301 (2602)
Q Consensus 228 -----~~~~~~gt~~~~~~~al~~al~~~~-~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~ 301 (2602)
+.+++.|||++.+.+++.+|+++.. .+++++.++.+++.+++.+.|++ +|++++++++......++.|.+++.
T Consensus 265 ~~~~~p~rfe~gTpn~~~~i~l~aAl~~~~~ig~~~i~~~e~~L~~~~~~~L~~-~~~v~i~g~~~~~r~~~vsF~v~~~ 343 (405)
T COG0520 265 TLAELPLRFEAGTPNIAGAIGLAAALDYLLEIGMEAIEAHERELTEYLLEGLSE-LPGVEIYGPPDADRGGIVSFNVKGI 343 (405)
T ss_pred cccCcchhhccCCchHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc-CCCeEEecCCcccCceEEEEEeCCC
Confidence 4678889999999999999999655 56899999999999999999988 8999999877522234556666778
Q ss_pred ChhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 302 EGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 302 ~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
+..++...| ++|.+|.|.+|..+ .++.++++ ..+|+|+++|||.+|||+|+++|++.
T Consensus 344 ~~~dv~~~L~~~gI~vr~g~~ca~p------~~~~~~~~-----~~iR~S~~~YNt~edid~l~~aL~~~ 402 (405)
T COG0520 344 HPHDVATLLDEKGIAVRAGHHCAQP------LHRLLGVD-----ATIRASLHLYNTEEDVDRLLEALKKA 402 (405)
T ss_pred CHHHHHHHHHhCCeEEEeccccccH------HHHhcCCC-----CceEEEEeecCCHHHHHHHHHHHHHH
Confidence 888888888 78999999999875 46777776 55999999999999999999999974
|
|
| >COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=428.05 Aligned_cols=360 Identities=30% Similarity=0.457 Sum_probs=322.5
Q ss_pred ceeeeccC-CCCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCC-CcEEEeCCHHHHHHHH
Q psy15216 1393 YTNIVFKD-ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADP-REIIWTSGATESNNLA 1470 (2602)
Q Consensus 1393 ~~~v~L~~-~~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~-~~iv~t~gaT~al~~a 1470 (2602)
...+|+|+ ++++.|..+++++.+++...+.|+|++.|..+......++++|+.+++++|+++ ++|+||+|+|+|++++
T Consensus 21 ~~~vylD~aa~~~~p~~V~~a~~~~~~~~~an~~r~~~~~~~~~t~~~e~aRe~va~~~~a~~~~eIvft~~tT~aln~v 100 (405)
T COG0520 21 KPLVYLDNAATSQKPQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFLNADSSDEIVFTRGTTEALNLV 100 (405)
T ss_pred CCeEEecCcccccCCHHHHHHHHHHHHhhcCCcCcccchHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCChhHHHHHH
Confidence 34678875 556789999999999999889999999999999999999999999999999985 8999999999999999
Q ss_pred HHhhhhhhccCCCEEEEcCCCCcchHHHHHHHHh-CCcEEEEeccCCCCCcChhHHHhhccCCceEEEEecccccccccc
Q psy15216 1471 IKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLEN-DGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQ 1549 (2602)
Q Consensus 1471 l~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~-~G~~v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~ 1549 (2602)
..++... +++||+|++++.+|+++..+|+.+.. .|++++++++++++.++.++++..++++||+|.++|++|.||.+.
T Consensus 101 a~~l~~~-~~~gdeIv~s~~EH~sn~~pw~~~~~~~Ga~v~~i~~~~~g~~~~~~~~~~i~~~Tklvais~vSn~tG~~~ 179 (405)
T COG0520 101 ARGLGRS-LKPGDEIVVSDLEHHSNIVPWQELAKRTGAKVRVIPLDDDGLLDLDALEKLITPKTKLVALSHVSNVTGTVN 179 (405)
T ss_pred HHHhhhh-hcCCCEEEEccCcchhhHHHHHHHHHhcCcEEEEEecCCCCCcCHHHHHHhcCCCceEEEEECccccccccc
Confidence 9999532 58999999999999999999999855 599999999998999999999999999999999999999999999
Q ss_pred ChHHHHHHhhhcCCEEEEecccccCcccccCCCCCccEEEEcccc-ccCCCceEEEEEecCCCCccccccccCCc-----
Q psy15216 1550 PILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGH----- 1623 (2602)
Q Consensus 1550 ~l~~I~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K-~~gp~G~G~l~~~~~~~~~l~~~~~g~~~----- 1623 (2602)
|+++|+++||++|+++++|++|++|+.++|+.++++||+++|+|| ++||+|+|+||+++++++.+.|...||+.
T Consensus 180 pv~~I~~la~~~ga~v~VDaaq~~~h~~idv~~l~~Df~afsgHKwl~gP~GiGvLy~r~~~l~~l~P~~~gg~~~~~~~ 259 (405)
T COG0520 180 PVKEIAELAHEHGALVLVDAAQAAGHLPIDVQELGCDFLAFSGHKWLLGPTGIGVLYVRKELLEELEPFLGGGGMIEYVS 259 (405)
T ss_pred hHHHHHHHHHHcCCEEEEECccccCccCCCchhcCCCEEEEcccccccCCCceEEEEEchHHHhhcCCcccCCCceeeec
Confidence 999999999999999999999999999999999999999999999 89999999999999999999887777643
Q ss_pred ----------cccCCCCCcchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEE
Q psy15216 1624 ----------EYGLRSGTLATHQIVGMGEAFRLAR-IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNI 1692 (2602)
Q Consensus 1624 ----------~~~~~~gt~~~~~~~al~~aL~~~~-~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~ 1692 (2602)
+.+++.||+++.+.+++.+|+++.. .+++++.++.+++.+++.+.|.+ +|++.+++++......+..|
T Consensus 260 ~~~~~~~~~~p~rfe~gTpn~~~~i~l~aAl~~~~~ig~~~i~~~e~~L~~~~~~~L~~-~~~v~i~g~~~~~r~~~vsF 338 (405)
T COG0520 260 RDEGVTLAELPLRFEAGTPNIAGAIGLAAALDYLLEIGMEAIEAHERELTEYLLEGLSE-LPGVEIYGPPDADRGGIVSF 338 (405)
T ss_pred ccccccccCcchhhccCCchHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc-CCCeEEecCCcccCceEEEE
Confidence 4578899999999999999999554 56899999999999999999998 89999998765222345556
Q ss_pred EEecCCcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1693 SFNFIEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1693 ~~~~~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
.+++.+..++...| ++|.++.|.+|..+ .+..++.. +.+|+|++.|||.+|||+++++|++.
T Consensus 339 ~v~~~~~~dv~~~L~~~gI~vr~g~~ca~p------~~~~~~~~-----~~iR~S~~~YNt~edid~l~~aL~~~ 402 (405)
T COG0520 339 NVKGIHPHDVATLLDEKGIAVRAGHHCAQP------LHRLLGVD-----ATIRASLHLYNTEEDVDRLLEALKKA 402 (405)
T ss_pred EeCCCCHHHHHHHHHhCCeEEEeccccccH------HHHhcCCC-----CceEEEEeecCCHHHHHHHHHHHHHH
Confidence 66677778888777 78999999999876 35666666 45999999999999999999999973
|
|
| >KOG1549|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=406.69 Aligned_cols=364 Identities=56% Similarity=0.898 Sum_probs=333.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhccc
Q psy15216 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAH 80 (2602)
Q Consensus 1 Ld~a~~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~ 80 (2602)
||+++++|.++.|++++..++...++|||+. .+++.+...++++|+.+|+++|+++.+|+||+|+|+++++++.++.
T Consensus 47 ld~~at~p~~~~Vldam~~~~~~~~~nPh~~--~y~w~~~~~~E~aR~~VAklInAd~~dIiFts~ATEs~Nlvl~~v~- 123 (428)
T KOG1549|consen 47 LDNQATGPMDPRVLDAMLPYLLEYLGNPHSR--SYGWKAEDAVEAAREQVAKLINADPSDIVFTSGATESNNLVLKGVA- 123 (428)
T ss_pred EecCcCCCCCHHHHHHHHHHHHHhhcCCCcc--ccchhhhHHHHHHHHHHHHHhCCCCCcEEEeCCchHHHHHHHHHhh-
Confidence 6999999999999999999999999999984 5677788889999999999999999899999999999999999998
Q ss_pred ccccCCC----EEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHH
Q psy15216 81 FYKKRGK----HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPIL 156 (2602)
Q Consensus 81 ~~~~~gd----~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~ 156 (2602)
+..+| +|++.+.+|+++..+|+.++..|++++++|++.++.+|++.+++.|+++|++|.+.+++|.+|.++|++
T Consensus 124 --~~~~~~~~k~iitl~~eH~~v~~s~~~l~~~g~~Vt~lpv~~~~~~d~~~~~~~i~~~T~lv~I~~Vnn~~gv~~Pv~ 201 (428)
T KOG1549|consen 124 --RFFGDKTKKHIITLQTEHPCVLDSCRALQEEGLEVTYLPVEDSGLVDISKLREAIRSKTRLVSIMHVNNEIGVLQPVK 201 (428)
T ss_pred --ccccccccceEEEecccCcchhHHHHHHHhcCeEEEEeccCccccccHHHHHHhcCCCceEEEEEecccCccccccHH
Confidence 55667 999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCEEEEecccccccccccCCCCCccEEEeccccccCCCCcEEEEEec-CCCCcccceecCCCccccccccC
Q psy15216 157 EIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRR-NPRTRIEAQIHGGGHEYGLRSGT 235 (2602)
Q Consensus 157 ~I~~la~~~g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K~~Gp~G~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~gt 235 (2602)
+|.++|+++|+++++|+||++|..++|+.++++|++++|.||||||+|+|+||+++ .-.-++.|.+.||++.++++.||
T Consensus 202 EI~~icr~~~v~v~~DaAQavG~i~vDV~eln~D~~s~s~HK~ygp~~iGaLYvr~~~~~~~~~p~~~GGgq~r~~rsGT 281 (428)
T KOG1549|consen 202 EIVKICREEGVQVHVDAAQAVGKIPVDVQELNADFLSISAHKIYGPPGIGALYVRRKRPRLRVEPPLSGGGQERGLRSGT 281 (428)
T ss_pred HHHHHhCcCCcEEEeehhhhcCCccccHHHcCchheeeecccccCCCcceEEEEccCCCcccccCcccCCccccccccCC
Confidence 99999999999999999999999999999999999999999999999999999998 33345568888999999999999
Q ss_pred cchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcccChhHHHHHhCCeEE
Q psy15216 236 LATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIKDIAV 315 (2602)
Q Consensus 236 ~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~gI~v 315 (2602)
.+.+...++..|.++....+.....++.++...+...+....+...+.+++..+.+....+.|+......++..++.+.+
T Consensus 282 ~~~~~~~~~gsA~e~~~~~~~~~~~~~~~~~~~ll~~i~~~~~~~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l 361 (428)
T KOG1549|consen 282 VATPLAVGLGSAAEFVNKEMAYDEAIIKRLSEKLLMGIGQSLPEVTLNGSGKSRYPGLVSLSFPYVEGESLLMDLKDVAL 361 (428)
T ss_pred cCchhhhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhhCchhhccCCcccccccceeeecccccCcchhhhhhhhhh
Confidence 99999999999999877666666666666778888887665778888888877788889999997777888888899999
Q ss_pred cccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 316 SSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 316 ~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
+.+..|...+..|+++++..|.+.+.++.+||||+|.||+.+|++++++.+++.
T Consensus 362 ~s~~a~~~~~~epsy~l~~~G~~~~~~~~~iRis~G~y~t~~di~~~~~~i~~~ 415 (428)
T KOG1549|consen 362 SSGSACTSASLEPSYVLRAIGVDEDLAHSSIRISIGRYTTEEDIDYLVDAIKKL 415 (428)
T ss_pred cccchhhcCCCCcchhhhhcCcchhhhcceeEEeeeeeCcHHHHHHHHHHHHHH
Confidence 999999887678999999999999999999999999999999999999999974
|
|
| >KOG1549|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=397.53 Aligned_cols=368 Identities=55% Similarity=0.886 Sum_probs=331.9
Q ss_pred eceeeecc-CCCCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHH
Q psy15216 1392 PYTNIVFK-DATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLA 1470 (2602)
Q Consensus 1392 P~~~v~L~-~~~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~a 1470 (2602)
+..++|+| .++++.++.+++++.+++...++|||+. .+++.....++++|+.+|+++|+++.+|+||+|+|++++++
T Consensus 41 ~~~~vyld~~at~p~~~~Vldam~~~~~~~~~nPh~~--~y~w~~~~~~E~aR~~VAklInAd~~dIiFts~ATEs~Nlv 118 (428)
T KOG1549|consen 41 GTRPVYLDNQATGPMDPRVLDAMLPYLLEYLGNPHSR--SYGWKAEDAVEAAREQVAKLINADPSDIVFTSGATESNNLV 118 (428)
T ss_pred CCccEEEecCcCCCCCHHHHHHHHHHHHHhhcCCCcc--ccchhhhHHHHHHHHHHHHHhCCCCCcEEEeCCchHHHHHH
Confidence 44678997 4667999999999999999999999995 45667777799999999999999999999999999999999
Q ss_pred HHhhhhhhccCCC----EEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccCCceEEEEeccccccc
Q psy15216 1471 IKGAAHFYKKRGK----HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIG 1546 (2602)
Q Consensus 1471 l~~l~~~~~~~gd----~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG 1546 (2602)
++++. |..++ +|++.+.+|++...+++.++..|++++++|++.++.+|.+.++++|+++|++|.+.+++|.+|
T Consensus 119 l~~v~---~~~~~~~~k~iitl~~eH~~v~~s~~~l~~~g~~Vt~lpv~~~~~~d~~~~~~~i~~~T~lv~I~~Vnn~~g 195 (428)
T KOG1549|consen 119 LKGVA---RFFGDKTKKHIITLQTEHPCVLDSCRALQEEGLEVTYLPVEDSGLVDISKLREAIRSKTRLVSIMHVNNEIG 195 (428)
T ss_pred HHHhh---ccccccccceEEEecccCcchhHHHHHHHhcCeEEEEeccCccccccHHHHHHhcCCCceEEEEEecccCcc
Confidence 99998 45666 999999999999999999999999999999998899999999999999999999999999999
Q ss_pred cccChHHHHHHhhhcCCEEEEecccccCcccccCCCCCccEEEEccccccCCCceEEEEEec-CCCCccccccccCCccc
Q psy15216 1547 VIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRR-NPRTRIEAQIHGGGHEY 1625 (2602)
Q Consensus 1547 ~~~~l~~I~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K~~gp~G~G~l~~~~-~~~~~l~~~~~g~~~~~ 1625 (2602)
+++|+++|.++|+++|+.+++|+||++|.+++|+.++++|++++|.||+|||+|+|+||+++ ...-.+.|.+.||++..
T Consensus 196 v~~Pv~EI~~icr~~~v~v~~DaAQavG~i~vDV~eln~D~~s~s~HK~ygp~~iGaLYvr~~~~~~~~~p~~~GGgq~r 275 (428)
T KOG1549|consen 196 VLQPVKEIVKICREEGVQVHVDAAQAVGKIPVDVQELNADFLSISAHKIYGPPGIGALYVRRKRPRLRVEPPLSGGGQER 275 (428)
T ss_pred ccccHHHHHHHhCcCCcEEEeehhhhcCCccccHHHcCchheeeecccccCCCcceEEEEccCCCcccccCcccCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999997 33334568888999999
Q ss_pred cCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecCCcHHHHHh
Q psy15216 1626 GLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMA 1705 (2602)
Q Consensus 1626 ~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1705 (2602)
++++||.+.+...++..|+++....+.....+...+-..+..++....+.+.+.+++....+....+.|+......++..
T Consensus 276 ~~rsGT~~~~~~~~~gsA~e~~~~~~~~~~~~~~~~~~~ll~~i~~~~~~~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~ 355 (428)
T KOG1549|consen 276 GLRSGTVATPLAVGLGSAAEFVNKEMAYDEAIIKRLSEKLLMGIGQSLPEVTLNGSGKSRYPGLVSLSFPYVEGESLLMD 355 (428)
T ss_pred ccccCCcCchhhhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhhCchhhccCCcccccccceeeecccccCcchhhh
Confidence 99999999999999999999877666666666666777777777665788888888888889999999997777777788
Q ss_pred cCCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1706 IKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1706 L~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
++.+.++.|..|......|+|++...|.+.+.++++||||++.|||.+|++++++.+++
T Consensus 356 ~~~~~l~s~~a~~~~~~epsy~l~~~G~~~~~~~~~iRis~G~y~t~~di~~~~~~i~~ 414 (428)
T KOG1549|consen 356 LKDVALSSGSACTSASLEPSYVLRAIGVDEDLAHSSIRISIGRYTTEEDIDYLVDAIKK 414 (428)
T ss_pred hhhhhhcccchhhcCCCCcchhhhhcCcchhhhcceeEEeeeeeCcHHHHHHHHHHHHH
Confidence 88899999999977656789999999999999999999999999999999999999997
|
|
| >PLN02651 cysteine desulfurase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=419.16 Aligned_cols=360 Identities=62% Similarity=0.986 Sum_probs=325.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhccc
Q psy15216 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAH 80 (2602)
Q Consensus 1 Ld~a~~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~ 80 (2602)
|||++++|+|+.+++++.+++...+++|+.+.+..+....+.++++|+.+++++|+++++|+|++|+|+++++++.++..
T Consensus 3 ld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~t~~~t~a~~~~l~~~~~ 82 (364)
T PLN02651 3 LDMQATTPIDPRVLDAMLPFLIEHFGNPHSRTHLYGWESEDAVEKARAQVAALIGADPKEIIFTSGATESNNLAIKGVMH 82 (364)
T ss_pred ccCcCCCCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHH
Confidence 79999999999999999999987788887655666677788899999999999999988999999999999999887643
Q ss_pred ccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHH
Q psy15216 81 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGE 160 (2602)
Q Consensus 81 ~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~ 160 (2602)
..+++||+|+++..+|+++..++..++..|++++.+++++++.+|+++++++++++|+++++++++|+||.+.|+++|.+
T Consensus 83 ~~~~~g~~vl~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~t~lv~v~~~~n~tG~~~~l~~I~~ 162 (364)
T PLN02651 83 FYKDKKKHVITTQTEHKCVLDSCRHLQQEGFEVTYLPVKSDGLVDLDELAAAIRPDTALVSVMAVNNEIGVIQPVEEIGE 162 (364)
T ss_pred hccCCCCEEEEcccccHHHHHHHHHHHhcCCEEEEEccCCCCcCCHHHHHHhcCCCcEEEEEECCCCCceecccHHHHHH
Confidence 33478999999999999998888877777999999999888889999999999999999999999999999999999999
Q ss_pred HHHhcCCEEEEecccccccccccCCCCCccEEEeccccccCCCCcEEEEEecCCCCcccceecCCCccccccccCcchhH
Q psy15216 161 LCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQ 240 (2602)
Q Consensus 161 la~~~g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K~~Gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~ 240 (2602)
+||++|+++++|++|++|..++++.++++|++++|+||++||.|+|+++++++....+.|...||+.+.+++.||+++.+
T Consensus 163 ~~~~~g~~~~vD~a~~~g~~~~~~~~~~~D~~~~s~hK~~gp~G~g~l~v~~~~~~~l~p~~~g~~~~~~~~~GT~~~~~ 242 (364)
T PLN02651 163 LCREKKVLFHTDAAQAVGKIPVDVDDLGVDLMSISGHKIYGPKGVGALYVRRRPRVRLEPLMSGGGQERGRRSGTENTPL 242 (364)
T ss_pred HHHHcCCEEEEEcchhhCCcccCcccCCCCEEEechhhhCCCCceEEEEEcCCCCCCCCccccCCCccCCccCCCccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988888777788999999999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCC--CCCCCceEEEEEcccChhHHHHHhCCeEEccc
Q psy15216 241 IVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDM--NNRIPHNLNISFNFIEGESLLMAIKDIAVSSG 318 (2602)
Q Consensus 241 ~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~L~gI~v~~g 318 (2602)
++++.+|+++.....+++.++..++++++++.|++.+++++++++. ..+.+.++.|.+++.++.++...|..|.++.|
T Consensus 243 ~~~l~~al~~~~~~~~~i~~~~~~l~~~l~~~l~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~L~~i~v~~g 322 (364)
T PLN02651 243 VVGLGAACELAMKEMDYDEKHMKALRERLLNGLRAKLGGVRVNGPRDPEKRYPGTLNLSFAYVEGESLLMGLKEVAVSSG 322 (364)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhCCCEEEECCCCcccCcCCEEEEEeCCCCHHHHHHHhCCEEEEch
Confidence 9999999997776779999999999999999997646899999863 33457788888888888899988866999999
Q ss_pred ccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHH
Q psy15216 319 SACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEID 360 (2602)
Q Consensus 319 ~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid 360 (2602)
.+|+++..++++.++.+|.+++...+.+|+|+++|||++|||
T Consensus 323 ~~c~~~~~~~~~~~~~~g~~~~~~~~~vR~S~~~~~t~~did 364 (364)
T PLN02651 323 SACTSASLEPSYVLRALGVPEEMAHGSLRLGVGRFTTEEEVD 364 (364)
T ss_pred hhcCCCCCCcCHHHHHcCCChHHhCceEEEEcCCCCCHHHcC
Confidence 999998888999999999876556789999999999999985
|
|
| >KOG2972|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-41 Score=363.26 Aligned_cols=220 Identities=26% Similarity=0.459 Sum_probs=191.2
Q ss_pred ccCcccccccccccchhhHHHHHHHHHHHHH-hcCCCCCCChHHHHHHHHHHHcCCChhHHHHHHHhccCCCCCCCcceE
Q psy15216 1194 AWGLEENSRLSFDAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDANIPKNNIFRAIQKNNSNIKNENINYI 1272 (2602)
Q Consensus 1194 ~~~~~~~srl~~d~~~~~~~~~~~~~i~~a~-~~g~~p~~n~~l~~~~~~a~~~~~p~~~i~~ai~~~~~~~~~~~~~~~ 1272 (2602)
.|..++|.|.++|.+|+|++.||+++|..|+ +||+||++|.||++.+++||+.+||||.||+||+||+|. ++...+
T Consensus 34 kwskIk~~Kg~nD~~rsk~~nkl~~~i~~aVk~gg~np~lN~~LAtlle~ak~~~vpkd~ien~i~ras~k---~~~a~e 110 (276)
T KOG2972|consen 34 KWSKIKHKKGANDQARSKQINKLSQGIILAVKQGGANPELNMRLATLLESAKKISVPKDGIENAINRASGK---EGSAVE 110 (276)
T ss_pred hhhhhcccccccHHHHHHHHHHHHHHHHHHHHhcCCCchhhhHHHHHHHHHHhcCCCHHHHHHHHHHhccC---CCCceE
Confidence 8999999999999999999999999999999 556799999999999999999999999999999999995 466788
Q ss_pred EEEEEEeccCCcEEEEEEecCCchhhHHHHHHhhhccCccccCCcceeEeeceeE-EEEECC-CCChhHHHHHHHhcCCc
Q psy15216 1273 EVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNKNGGNLSKEGSVLFMFKHCG-QLLFLP-NTKKNTLLDLALEKGAE 1350 (2602)
Q Consensus 1273 ~~~ye~~~p~g~~~~v~~~tdn~~r~~~~~r~~~~k~~g~~~~~g~v~~~f~~~g-~~~~~~-~~~~~~~~~~~~~~g~~ 1350 (2602)
...||+||||||++|||+||||+||+++.||++|+|+||-+ .++|.|+|++|| ++.++. ..|+|.+...+||+||+
T Consensus 111 ~~~ye~~gp~GV~liVealTdnknr~~~~iRs~~nk~GG~s--~~~~r~~FdkKG~Vv~V~~~~~dk~vL~ie~ie~~A~ 188 (276)
T KOG2972|consen 111 FIEYEAMGPSGVGLIVEALTDNKNRAASSIRSIFNKHGGAS--ASGVRFLFDKKGVVVNVPPEKRDKDVLNIEAIEAGAE 188 (276)
T ss_pred EEEEeeecCCceEEEEEeeeccHhHHHHHHHHHHHHcCCcc--cccceeEEeccceEEecChhhcchhhhhHHHHHhccc
Confidence 99999999999999999999999999999999999999844 456889999999 556665 35677777777999998
Q ss_pred eeeec--------cCc-eEEEEeCcccHHHHHHHHHhcCCCccccceeeeeceeeeccCCCCCCCHHHHHHHHHHHh
Q psy15216 1351 DFLID--------KDN-KITIITSPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDATTPIDPRVVDKMIPYLR 1418 (2602)
Q Consensus 1351 d~~~~--------~~~-~~~~~~~~~~~~~v~~aL~~~g~~~~~~ei~~iP~~~v~L~~~~~~~~~~v~eal~~~l~ 1418 (2602)
|+... ++. .|+++|+|+++.+|+..|++.|+.+.+++++|+|...+.++....+...+++++|.+..+
T Consensus 189 d~~~~~~~e~d~eeer~~fkiv~e~ssl~qV~~~Lr~~G~~i~d~~le~~P~~~vev~~~~lEk~qkL~q~L~e~ed 265 (276)
T KOG2972|consen 189 DIVAEPVLEIDEEEEREEFKIVTEPSSLNQVAHKLRSKGFEIKDSGLEFIPLEEVEVDVPALEKIQKLIQALYENED 265 (276)
T ss_pred ccccCcccccccccccceeEEEeccchHHHHHHHhhcCCceeeccccccccCCccccCccchHHHHHHHHHHhhchh
Confidence 87432 222 399999999999999999999999999999999999888876665555555666655444
|
|
| >TIGR02006 IscS cysteine desulfurase IscS | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=415.71 Aligned_cols=368 Identities=70% Similarity=1.120 Sum_probs=330.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhccc
Q psy15216 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAH 80 (2602)
Q Consensus 1 Ld~a~~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~ 80 (2602)
||+++++|+|+.+++++.+++...+++|+.+.+..++.....++++|+.+++++|+++++|+|++|+|+++++++.++..
T Consensus 7 ld~aa~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~~~g~t~a~~~~l~~l~~ 86 (402)
T TIGR02006 7 LDYAATTPVDPRVAEKMMPYLTEKFGNPASRSHSFGWEAEEAVENARNQVAELIGADSREIVFTSGATESNNLAIKGIAH 86 (402)
T ss_pred eeCCcCCCCCHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHH
Confidence 79999999999999999999877778887544545555667899999999999999989999999999999999887752
Q ss_pred ccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHH
Q psy15216 81 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGE 160 (2602)
Q Consensus 81 ~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~ 160 (2602)
...++||+|+++.++|+++..++..+++.|++++.+++++++.+|+++++++++++++++++++++||||.+.|+++|.+
T Consensus 87 ~~~~~g~~Vi~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~lv~v~~~~n~tG~~~~~~~I~~ 166 (402)
T TIGR02006 87 FYKSKGNHIITSKTEHKAVLDTCRYLEREGFEVTYLPPKSNGLIDLEELKAAIRDDTILVSIMHVNNEIGVIQDIAAIGE 166 (402)
T ss_pred hhcCCCCEEEECCCccHHHHHHHHHHHhcCCEEEEEccCCCCcCCHHHHHHhcCCCCEEEEEECCCcCceecccHHHHHH
Confidence 22368999999999999999888877777999999999888899999999999999999999999999999999999999
Q ss_pred HHHhcCCEEEEecccccccccccCCCCCccEEEeccccccCCCCcEEEEEecCCCCcccceecCCCccccccccCcchhH
Q psy15216 161 LCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQ 240 (2602)
Q Consensus 161 la~~~g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K~~Gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~ 240 (2602)
+||++|+++++|++|++|..++++.++++|++++|+||++||+|+|+++++++....+.|...+++..++++.||+++..
T Consensus 167 l~~~~g~~livD~a~a~g~~~~~~~~~~~D~~~~s~~K~~gp~G~G~l~~~~~~~~~~~~~~~g~~~~~~~~~gt~~~~~ 246 (402)
T TIGR02006 167 ICRERKVFFHVDAAQSVGKIPINVNELKVDLMSISGHKIYGPKGIGALYVRRKPRVRLEALIHGGGHERGMRSGTLPTHQ 246 (402)
T ss_pred HHHHcCCEEEEEcchhcCCcccCccccCCCEEEEehhhhcCCCceEEEEEccCCCCCCCceecCCCccCCccCCCccHHH
Confidence 99999999999999999999999999999999999999999999999999988777788877777777778899999999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcccChhHHHHHhCCeEEccccc
Q psy15216 241 IVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIKDIAVSSGSA 320 (2602)
Q Consensus 241 ~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~gI~v~~g~~ 320 (2602)
++++.+++++...+++.+.++++++++++++.|.+ ++++++.++...+.|+.+.+.|+..+...+...|++|.++.|.+
T Consensus 247 ~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~-~~~v~~~~~~~~~~p~~~~v~f~~~~~~~~~~~l~~i~v~~G~~ 325 (402)
T TIGR02006 247 IVGMGEAFRIAKEEMAQDTAHVLALRDRLLNGIKS-IEEVYLNGDLEHRVPGNLNVSFNYVEGESLIMALKDLAVSSGSA 325 (402)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc-CCCEEEeCCccccCCCeEEEEEeCcCHHHHHHhcCCEEEechhh
Confidence 99999999987778899999999999999999987 78998887655566666678888777778888889999999999
Q ss_pred CCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 321 CTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 321 ~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
|.+.+.++++.++.+|+++....++||+|+++|||.+|||+++++|++.
T Consensus 326 c~~~~~~~~~~l~~lg~~~~~~~~~vR~S~~~~~t~edid~l~~~l~~~ 374 (402)
T TIGR02006 326 CTSASLEPSYVLRALGINDELAHSSIRFTIGRFTTEEEIDYAVKLVKSA 374 (402)
T ss_pred cCCCCCCccHHHHHcCCChhhcCceEEEEecCCCCHHHHHHHHHHHHHH
Confidence 9998889999999999987777899999999999999999999999974
|
This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors. |
| >TIGR03402 FeS_nifS cysteine desulfurase NifS | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-38 Score=405.62 Aligned_cols=365 Identities=48% Similarity=0.785 Sum_probs=324.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhccc
Q psy15216 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAH 80 (2602)
Q Consensus 1 Ld~a~~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~ 80 (2602)
|||++++|+|+.+++++.+++...++||+. .+..+......++++|+++++++|+++++|+||+|+|+++++++.++..
T Consensus 3 ld~aa~~~~~~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~r~~la~~~g~~~~~i~~t~~~t~a~~~al~~~~~ 81 (379)
T TIGR03402 3 LDNNATTRVDPEVLEAMLPYFTEYFGNPSS-MHSFGGEVGKAVEEAREQVAKLLGAEPDEIIFTSGGTESDNTAIKSALA 81 (379)
T ss_pred CCCcCCCCCCHHHHHHHHHHHHhcCCCCCc-ccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHHHHHHHH
Confidence 899999999999999999998877788875 4555566778899999999999999988999999999999999988641
Q ss_pred ccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHH
Q psy15216 81 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGE 160 (2602)
Q Consensus 81 ~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~ 160 (2602)
...+|++|+++..+|+++..++..+++.|++++.++.++++.+|+++++++++++++++++++++|+||.++|+++|.+
T Consensus 82 -~~~~~~~vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~g~~~~~~l~~~i~~~~~lv~i~~~~n~tG~~~~~~~I~~ 160 (379)
T TIGR03402 82 -AQPEKRHIITTAVEHPAVLSLCQHLEKQGYKVTYLPVDEEGRLDLEELRAAITDDTALVSVMWANNETGTIFPIEEIGE 160 (379)
T ss_pred -hcCCCCeEEEcccccHHHHHHHHHHHHcCCEEEEEccCCCCcCCHHHHHHhcCCCcEEEEEEcccCCeeecccHHHHHH
Confidence 1245789999999999999988888778999999998888889999999999999999999999999999999999999
Q ss_pred HHHhcCCEEEEecccccccccccCCCCCccEEEeccccccCCCCcEEEEEecCCCCcccceecCCCccccccccCcchhH
Q psy15216 161 LCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQ 240 (2602)
Q Consensus 161 la~~~g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K~~Gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~ 240 (2602)
+||++|+++++|++|++|..++++.++++|++++|+||++||+|+|+++++++. .+.|...++..+..++.||+++++
T Consensus 161 l~~~~g~~vivD~~~~~g~~~~~~~~~~~D~~~~s~~K~~gp~G~g~l~v~~~~--~~~p~~~g~~~~~~~~~gt~~~~~ 238 (379)
T TIGR03402 161 IAKERGALFHTDAVQAVGKIPIDLKEMNIDMLSLSGHKLHGPKGVGALYIRKGT--RFRPLLRGGHQERGRRAGTENVPG 238 (379)
T ss_pred HHHHcCCEEEEECcccccccccCcccCCCCEEEEcHHHcCCCCceEEEEECCCC--CCCCcccCCccCCCcCCCCccHHH
Confidence 999999999999999999999999999999999999999999999999999865 366777666666667899999999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcccChhHHHHHh--CCeEEccc
Q psy15216 241 IVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDIAVSSG 318 (2602)
Q Consensus 241 ~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~v~~g 318 (2602)
++++.+++++...+++++.++..++++++++.|.+.++++++.+++..+.|.++.++++..++.++...| +||.++.|
T Consensus 239 ~~~l~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~v~~g 318 (379)
T TIGR03402 239 IVGLGKAAELATEHLEEENTRVRALRDRLEAGLLARIPDARLNGDPTKRLPNTVNISFEYIEGEAILLLLDMEGICASSG 318 (379)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhCCCEEEeCCCccCCCCEEEEEecCCCHHHHHHhhccCCEEEEch
Confidence 9999999998777888999999999999999997447899988765545566788888888888888877 79999999
Q ss_pred ccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 319 SACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 319 ~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
.+|.++...++..+..+|.......+.||+|+|+|||++||++++++|++.
T Consensus 319 ~~c~~~~~~~~~~~~~lg~~~~~~~~~vR~S~~~~~t~~di~~~~~~l~~~ 369 (379)
T TIGR03402 319 SACTSGSLEPSHVLRAMGVPHTAAHGSIRFSLSRYNTEEDIDYVLEVLPPI 369 (379)
T ss_pred hhcCCCCCCcCHHHHHcCCChhhcCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 999988777888999999876556689999999999999999999999974
|
Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403. |
| >PLN02651 cysteine desulfurase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-38 Score=402.80 Aligned_cols=361 Identities=61% Similarity=0.978 Sum_probs=322.0
Q ss_pred eeccC-CCCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhh
Q psy15216 1396 IVFKD-ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGA 1474 (2602)
Q Consensus 1396 v~L~~-~~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l 1474 (2602)
+|||+ +.++.++.+++++.+++...++||+++.|..+......++++|+.+++++|+++++|+||+|+|+++++++.++
T Consensus 1 iYld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~t~~~t~a~~~~l~~~ 80 (364)
T PLN02651 1 LYLDMQATTPIDPRVLDAMLPFLIEHFGNPHSRTHLYGWESEDAVEKARAQVAALIGADPKEIIFTSGATESNNLAIKGV 80 (364)
T ss_pred CcccCcCCCCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHH
Confidence 47765 44688999999999999877889987556667777888999999999999998889999999999999998887
Q ss_pred hhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccCCceEEEEeccccccccccChHHH
Q psy15216 1475 AHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEI 1554 (2602)
Q Consensus 1475 ~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I 1554 (2602)
....+++||+|++++.+|+++..++..+...|++++.++.++++.+|+++++++++++|+++++++++|+||.++|+++|
T Consensus 81 ~~~~~~~g~~vl~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~t~lv~v~~~~n~tG~~~~l~~I 160 (364)
T PLN02651 81 MHFYKDKKKHVITTQTEHKCVLDSCRHLQQEGFEVTYLPVKSDGLVDLDELAAAIRPDTALVSVMAVNNEIGVIQPVEEI 160 (364)
T ss_pred HHhccCCCCEEEEcccccHHHHHHHHHHHhcCCEEEEEccCCCCcCCHHHHHHhcCCCcEEEEEECCCCCceecccHHHH
Confidence 54334789999999999999988887776779999999998888899999999999999999999999999999999999
Q ss_pred HHHhhhcCCEEEEecccccCcccccCCCCCccEEEEccccccCCCceEEEEEecCCCCccccccccCCccccCCCCCcch
Q psy15216 1555 GELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLAT 1634 (2602)
Q Consensus 1555 ~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K~~gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~ 1634 (2602)
.++||+||+++++|++|++|..++++.++++|++++|+||++||.|+|+++++++....+.|...||+.+.+++.||+++
T Consensus 161 ~~~~~~~g~~~~vD~a~~~g~~~~~~~~~~~D~~~~s~hK~~gp~G~g~l~v~~~~~~~l~p~~~g~~~~~~~~~GT~~~ 240 (364)
T PLN02651 161 GELCREKKVLFHTDAAQAVGKIPVDVDDLGVDLMSISGHKIYGPKGVGALYVRRRPRVRLEPLMSGGGQERGRRSGTENT 240 (364)
T ss_pred HHHHHHcCCEEEEEcchhhCCcccCcccCCCCEEEechhhhCCCCceEEEEEcCCCCCCCCccccCCCccCCccCCCccH
Confidence 99999999999999999999999999999999999999999999999999999998888988888887777889999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCC--CCCCCceEEEEEecCCcHHHHHhcCCEEEc
Q psy15216 1635 HQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDM--NNRIPHNLNISFNFIEGESLLMAIKDIAVS 1712 (2602)
Q Consensus 1635 ~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~--~~~~~~~~~~~~~~~~~~~~~~~L~gI~v~ 1712 (2602)
+.++++.+||++.....+++.++...+++++++.|.+.++++.+.++. ..+.+.++.|.+++.+..++...|..|.++
T Consensus 241 ~~~~~l~~al~~~~~~~~~i~~~~~~l~~~l~~~l~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~L~~i~v~ 320 (364)
T PLN02651 241 PLVVGLGAACELAMKEMDYDEKHMKALRERLLNGLRAKLGGVRVNGPRDPEKRYPGTLNLSFAYVEGESLLMGLKEVAVS 320 (364)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhCCCEEEECCCCcccCcCCEEEEEeCCCCHHHHHHHhCCEEEE
Confidence 999999999998777778999999999999999997646899999863 234577888888877888888888669999
Q ss_pred cccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHH
Q psy15216 1713 SGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEID 1756 (2602)
Q Consensus 1713 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid 1756 (2602)
.|++|..+...+++++..+|.......+.||+|+++|||++|||
T Consensus 321 ~g~~c~~~~~~~~~~~~~~g~~~~~~~~~vR~S~~~~~t~~did 364 (364)
T PLN02651 321 SGSACTSASLEPSYVLRALGVPEEMAHGSLRLGVGRFTTEEEVD 364 (364)
T ss_pred chhhcCCCCCCcCHHHHHcCCChHHhCceEEEEcCCCCCHHHcC
Confidence 99999987777888999999876556789999999999999985
|
|
| >TIGR02006 IscS cysteine desulfurase IscS | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-37 Score=399.48 Aligned_cols=370 Identities=69% Similarity=1.101 Sum_probs=328.3
Q ss_pred eeeccC-CCCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHh
Q psy15216 1395 NIVFKD-ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKG 1473 (2602)
Q Consensus 1395 ~v~L~~-~~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~ 1473 (2602)
.+|||+ ++++.++.+++++.+++...+++|+.+.+..++...+.++++|+.+++++|+++++|+|++|+|+++++++.+
T Consensus 4 ~~yld~aa~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~~~g~t~a~~~~l~~ 83 (402)
T TIGR02006 4 PIYLDYAATTPVDPRVAEKMMPYLTEKFGNPASRSHSFGWEAEEAVENARNQVAELIGADSREIVFTSGATESNNLAIKG 83 (402)
T ss_pred cEEeeCCcCCCCCHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHH
Confidence 478875 4468899999999999877788888644555556667899999999999999888999999999999999888
Q ss_pred hhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccCCceEEEEeccccccccccChHH
Q psy15216 1474 AAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILE 1553 (2602)
Q Consensus 1474 l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~ 1553 (2602)
+.....++||+|+++.++|+++..++..++..|+++++++.++++.+|+++++++++++++++++++++|+||.+.|+++
T Consensus 84 l~~~~~~~g~~Vi~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~lv~v~~~~n~tG~~~~~~~ 163 (402)
T TIGR02006 84 IAHFYKSKGNHIITSKTEHKAVLDTCRYLEREGFEVTYLPPKSNGLIDLEELKAAIRDDTILVSIMHVNNEIGVIQDIAA 163 (402)
T ss_pred HHHhhcCCCCEEEECCCccHHHHHHHHHHHhcCCEEEEEccCCCCcCCHHHHHHhcCCCCEEEEEECCCcCceecccHHH
Confidence 75323468999999999999999888877677999999999888889999999999999999999999999999999999
Q ss_pred HHHHhhhcCCEEEEecccccCcccccCCCCCccEEEEccccccCCCceEEEEEecCCCCccccccccCCccccCCCCCcc
Q psy15216 1554 IGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLA 1633 (2602)
Q Consensus 1554 I~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K~~gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~ 1633 (2602)
|.++|++||+++++|++|++|..++++.++++|++++|+||++||+|+|+++++++....+.+...+++...+++.||++
T Consensus 164 I~~l~~~~g~~livD~a~a~g~~~~~~~~~~~D~~~~s~~K~~gp~G~G~l~~~~~~~~~~~~~~~g~~~~~~~~~gt~~ 243 (402)
T TIGR02006 164 IGEICRERKVFFHVDAAQSVGKIPINVNELKVDLMSISGHKIYGPKGIGALYVRRKPRVRLEALIHGGGHERGMRSGTLP 243 (402)
T ss_pred HHHHHHHcCCEEEEEcchhcCCcccCccccCCCEEEEehhhhcCCCceEEEEEccCCCCCCCceecCCCccCCccCCCcc
Confidence 99999999999999999999999999999999999999999999999999999988777777777777777778899999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecCCcHHHHHhcCCEEEcc
Q psy15216 1634 THQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIKDIAVSS 1713 (2602)
Q Consensus 1634 ~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~L~gI~v~~ 1713 (2602)
+..++++..++++...+++.+.++..++++++++.|.+ ++++.+.++...+.|....+.|+..+.+.+...|++|.++.
T Consensus 244 ~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~-~~~v~~~~~~~~~~p~~~~v~f~~~~~~~~~~~l~~i~v~~ 322 (402)
T TIGR02006 244 THQIVGMGEAFRIAKEEMAQDTAHVLALRDRLLNGIKS-IEEVYLNGDLEHRVPGNLNVSFNYVEGESLIMALKDLAVSS 322 (402)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc-CCCEEEeCCccccCCCeEEEEEeCcCHHHHHHhcCCEEEec
Confidence 99999999999987778889999999999999999987 78998887655556666678888767777877789999999
Q ss_pred ccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1714 GSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1714 g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
|.+|......+++.+..+|..+....++||+|++++||.+|||+++++|++.
T Consensus 323 G~~c~~~~~~~~~~l~~lg~~~~~~~~~vR~S~~~~~t~edid~l~~~l~~~ 374 (402)
T TIGR02006 323 GSACTSASLEPSYVLRALGINDELAHSSIRFTIGRFTTEEEIDYAVKLVKSA 374 (402)
T ss_pred hhhcCCCCCCccHHHHHcCCChhhcCceEEEEecCCCCHHHHHHHHHHHHHH
Confidence 9999988788889999999987777899999999999999999999999973
|
This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors. |
| >TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-37 Score=398.66 Aligned_cols=365 Identities=45% Similarity=0.693 Sum_probs=319.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCC-CCCcEEEeCCHHHHHHHHHHhcc
Q psy15216 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-DPREIIWTSGATESNNLAIKGAA 79 (2602)
Q Consensus 1 Ld~a~~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~-~~~~Iv~t~g~T~al~~~~~~l~ 79 (2602)
|||++++|+++.|++++.+++...++||+. .+.++......+++.++.+++.+|+ ++++|++|+|+|+++++++.++.
T Consensus 3 ld~aa~~~~~~~v~~~~~~~~~~~~~n~~~-~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~i~~t~g~teal~~~~~~~~ 81 (382)
T TIGR03403 3 LDNNATTMLDPKVKELMDPFFCDIYGNPNS-LHQFGTATHPAIAEALDKLYKGINARDLDDIIITSCATESNNWVLKGVY 81 (382)
T ss_pred ccCcCCCCCCHHHHHHHHHHHHhcCcCCcc-ccHHHHHHHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHHHHHHHHHHHH
Confidence 799999999999999999999988899985 5666666667788888888888887 67899999999999999999863
Q ss_pred cc-cccC-CCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHH
Q psy15216 80 HF-YKKR-GKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILE 157 (2602)
Q Consensus 80 ~~-~~~~-gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~ 157 (2602)
.. ..++ +++|+++..+||++..++..++..|++++.+++++++.+|+++++++++++|+++++++++||||.++|+++
T Consensus 82 ~~~~~~~~~~~vi~~~~e~ps~~~~~~~~~~~G~~v~~v~~~~~g~~d~~~l~~~i~~~t~lv~~~~~~n~tG~~~~~~~ 161 (382)
T TIGR03403 82 FDEILKGGKNHIITTEVEHPAVRATCAFLESLGVEVTYLPINEQGTITAEQVREAITEKTALVSVMWANNETGMIFPIKE 161 (382)
T ss_pred HhhcccCCCCEEEEcCCccHHHHHHHHHHHHCCCEEEEEecCCCCCCCHHHHHHhcccCCeEEEEEcccCCCccccCHHH
Confidence 11 1134 579999999999999999888778999999999888889999999999999999999999999999999999
Q ss_pred HHHHHHhcCCEEEEecccccccccccCCCCCccEEEeccccccCCCCcEEEEEecCCCCcccceecCCCccccccccCcc
Q psy15216 158 IGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLA 237 (2602)
Q Consensus 158 I~~la~~~g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K~~Gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~ 237 (2602)
|.++|+++|+++++|++|+.|..++++.++++|++++|+||++||+|+|++++++.. .+.|...|+.....++.||++
T Consensus 162 I~~la~~~g~~~ivD~a~~~g~~~~~~~~~~~D~~~~s~~K~~gp~G~g~l~vr~~~--~~~p~~~g~~~~~~~~~gt~~ 239 (382)
T TIGR03403 162 IGEICKERGVLFHTDAVQAIGKIPVDVQKAGVDFLSFSAHKFHGPKGVGGLYIRKGV--ELTPLFHGGEHMGGRRSGTLN 239 (382)
T ss_pred HHHHHHHcCCEEEEechhhcCCCccCccccCCCEEEEcchhhCCCCceEEEEECCCC--CCCCcccCCCCCCCcccCCcC
Confidence 999999999999999999999999999989999999999999999999999998764 455665555555567789999
Q ss_pred hhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcccChhHHHHHh--CCeEE
Q psy15216 238 THQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDIAV 315 (2602)
Q Consensus 238 ~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~v 315 (2602)
..+++++..++++..+.++...++.+.+++++++.|.+ +++++++++...+.++++.+.++..+...+...| +||.+
T Consensus 240 ~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~v 318 (382)
T TIGR03403 240 VPYIVAMGEAMRLANEYLDFEKSHVRRLRDRLEDALLE-LPDVFVVGDREHRVPNTILISIKGVEGEAMLWDLNKAGIAA 318 (382)
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc-CCCEEEECCCCCCcCCEEEEEeCCCCHHHHHHhhccCCEEE
Confidence 99999999999977777888899999999999999987 7899998876556677777888777788887777 89999
Q ss_pred cccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 316 SSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 316 ~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
+.|++|+.....+++++..+|.+++...+.||+|+++|||++|||+++++|++.
T Consensus 319 ~~g~~c~~~~~~~~~v~~~~g~~~~~~~~~iR~s~~~~~t~~did~~~~~l~~~ 372 (382)
T TIGR03403 319 STGSACASEDLEANPVMVAIGADKELAHTAIRLSLSRFTTEEEIDYTIEVFKKA 372 (382)
T ss_pred EchhccCCCCCCcCHHHHHcCCChHHhCeeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 999999877777788999999876556689999999999999999999999864
|
Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation. |
| >PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=404.73 Aligned_cols=355 Identities=23% Similarity=0.343 Sum_probs=306.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCC-CCCcEEEeCCHHHHHHHHHHhcc
Q psy15216 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-DPREIIWTSGATESNNLAIKGAA 79 (2602)
Q Consensus 1 Ld~a~~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~-~~~~Iv~t~g~T~al~~~~~~l~ 79 (2602)
|||++++|+|+.+++++.+++...+.|++.+.+..+......++++|+.+|+++|+ ++++|++|+|+|+++++++.++.
T Consensus 27 ld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~~l~~~~~~~~ 106 (406)
T PRK09295 27 LDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKQAALFINARSAEELVFVRGTTEGINLVANSWG 106 (406)
T ss_pred EeCcccccCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHHHHHHHHHHhh
Confidence 79999999999999999999987777887666766777888899999999999998 67899999999999999998863
Q ss_pred cccccCCCEEEEcCCCCcccHHHHHHH-HhCCcEEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHH
Q psy15216 80 HFYKKRGKHIITVQTEHKSVLDSIRKL-ENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEI 158 (2602)
Q Consensus 80 ~~~~~~gd~Vlv~~~~~~s~~~~~~~~-~~~G~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I 158 (2602)
...+++||+|++++++|++....|..+ ++.|++++.++.++++.+|+++|+++++++|++|+++|++||||.++|+++|
T Consensus 107 ~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~t~lv~l~~~~n~tG~~~~~~~i 186 (406)
T PRK09295 107 NSNVRAGDNIIISEMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPALFDERTRLLAITHVSNVLGTENPLAEM 186 (406)
T ss_pred hhcCCCcCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecCCCCCCCHHHHHHhcCCCcEEEEEecchhcccccCCHHHH
Confidence 223579999999999999987777655 6679999999988888899999999999999999999999999999999999
Q ss_pred HHHHHhcCCEEEEecccccccccccCCCCCccEEEeccccccCCCCcEEEEEecCCCCcccceecCCCc-----------
Q psy15216 159 GELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGH----------- 227 (2602)
Q Consensus 159 ~~la~~~g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K~~Gp~G~G~l~~~~~~~~~l~~~~~g~~~----------- 227 (2602)
.++||++|+++++|++|+.|..++++..+++|++++|+||++||+|+|++++++++++.+.|...|++.
T Consensus 187 ~~~~~~~~~~vivD~a~~~g~~~~~~~~~~~D~~~~s~~K~~gp~G~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 266 (406)
T PRK09295 187 IALAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKEALLQEMPPWEGGGSMIATVSLTEGTT 266 (406)
T ss_pred HHHHHHcCCEEEEEcccccCccccCchhcCCCEEEeehhhccCCCCcEEEEEchHhHhhCCCcccCCceeeeeecCCccc
Confidence 999999999999999999999999998899999999999999999999999999888877765544321
Q ss_pred ----cccccccCcchhHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcccC
Q psy15216 228 ----EYGLRSGTLATHQIVGMGEAFRLARI-EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIE 302 (2602)
Q Consensus 228 ----~~~~~~gt~~~~~~~al~~al~~~~~-~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~~ 302 (2602)
+.+++.||+++.+++++.+|+++..+ +++++.++.+++++++++.|.+ +++++++++.. + ..++.+.++..+
T Consensus 267 ~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~-~~~~~~~~~~~-~-~~iv~~~~~~~~ 343 (406)
T PRK09295 267 WAKAPWRFEAGTPNTGGIIGLGAALDYVSALGLNNIAEYEQNLMHYALSQLES-VPDLTLYGPQN-R-LGVIAFNLGKHH 343 (406)
T ss_pred cCCchhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc-CCCEEEeCCCC-C-ceEEEEEECCcC
Confidence 14578899999999999999996654 7889999999999999999988 78999987632 2 345666666666
Q ss_pred hhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 303 GESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 303 ~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
+.++...| +||.++.|.+|..+ .+..++.. +++|+|+|+|||++|||+++++|++.
T Consensus 344 ~~~~~~~L~~~gI~v~~g~~c~~~------~~~~~~~~-----~~iRiS~~~ynt~~did~l~~~l~~i 401 (406)
T PRK09295 344 AYDVGSFLDNYGIAVRTGHHCAMP------LMAYYNVP-----AMCRASLAMYNTHEEVDRLVAGLQRI 401 (406)
T ss_pred HHHHHHHHHhCCeEEeccccchHH------HHHHHCCC-----CEEEEEccCCCCHHHHHHHHHHHHHH
Confidence 67777666 79999999999753 44555543 78999999999999999999999864
|
|
| >PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=398.75 Aligned_cols=357 Identities=27% Similarity=0.349 Sum_probs=308.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCC-CCcEEEeCCHHHHHHHHHHhcc
Q psy15216 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYAD-PREIIWTSGATESNNLAIKGAA 79 (2602)
Q Consensus 1 Ld~a~~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~-~~~Iv~t~g~T~al~~~~~~l~ 79 (2602)
||+++++++|+.+++++.+++...+.+++.+.+..+......++++|+.+++++|++ +++|++|+|+|++++.++.++.
T Consensus 36 Ld~a~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~al~~i~~~~~ 115 (424)
T PLN02855 36 LDNAATSQKPAAVLDALQDYYEEYNSNVHRGIHALSAKATDAYELARKKVAAFINASTSREIVFTRNATEAINLVAYTWG 115 (424)
T ss_pred eeCccccCCCHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCHHHHHHHHHHHhh
Confidence 799999999999999999999877777766555555566678899999999999995 5799999999999999998752
Q ss_pred cccccCCCEEEEcCCCCcccHHHHHHH-HhCCcEEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHH
Q psy15216 80 HFYKKRGKHIITVQTEHKSVLDSIRKL-ENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEI 158 (2602)
Q Consensus 80 ~~~~~~gd~Vlv~~~~~~s~~~~~~~~-~~~G~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I 158 (2602)
...+++||+|++++++|++....|..+ ++.|++++.+++++++.+|++++++.++++|++|++++++||||.++|+++|
T Consensus 116 ~~~~~~gd~vl~~~~~~~s~~~~~~~~a~~~g~~v~~v~~~~~~~~~~~~l~~~i~~~t~lv~i~~~~n~tG~~~~~~~I 195 (424)
T PLN02855 116 LANLKPGDEVILSVAEHHSNIVPWQLVAQKTGAVLKFVGLTPDEVLDVEQLKELLSEKTKLVATHHVSNVLGSILPVEDI 195 (424)
T ss_pred hhcCCCcCEEEECCCccHHHHHHHHHHHHHcCCEEEEEecCCCCCcCHHHHHHHhccCceEEEEeCccccccccCCHHHH
Confidence 112478999999999999987777655 6679999999988777899999999999999999999999999999999999
Q ss_pred HHHHHhcCCEEEEecccccccccccCCCCCccEEEeccccccCCCCcEEEEEecCCCCcccceecCCCc-----------
Q psy15216 159 GELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGH----------- 227 (2602)
Q Consensus 159 ~~la~~~g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K~~Gp~G~G~l~~~~~~~~~l~~~~~g~~~----------- 227 (2602)
+++||++|+++++|++|+.|..++++.++++|++++|+||++||+|+|++++++++++.+.|...||..
T Consensus 196 ~~l~~~~g~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~G~G~l~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~ 275 (424)
T PLN02855 196 VHWAHAVGAKVLVDACQSVPHMPVDVQTLGADFLVASSHKMCGPTGIGFLWGKSDLLESMPPFLGGGEMISDVFLDHSTY 275 (424)
T ss_pred HHHHHHcCCEEEEEhhhhcCCcCCCchhcCCCEEEeecccccCCCccEEEEEchhhhhcCCCEecCCCceeeeecCcccc
Confidence 999999999999999999999999998899999999999999999999999999998888877655432
Q ss_pred ---cccccccCcchhHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCC---CCCCceEEEEEcc
Q psy15216 228 ---EYGLRSGTLATHQIVGMGEAFRLAR-IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMN---NRIPHNLNISFNF 300 (2602)
Q Consensus 228 ---~~~~~~gt~~~~~~~al~~al~~~~-~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~---~~~~~~~~~~~~~ 300 (2602)
+.+++.||+++.+++++.+++++.. .+++++.++..++++++++.|++ +++++++++.. ...+.++.|.+++
T Consensus 276 ~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~-~~g~~i~~~~~~~~~~r~~~v~~~~~~ 354 (424)
T PLN02855 276 APPPSRFEAGTPAIGEAIGLGAAIDYLSEIGMDRIHEYEVELGTYLYEKLSS-VPGVRIYGPKPSEGVGRAALCAFNVEG 354 (424)
T ss_pred CCChhhccCCChHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc-CCCEEEeCCCcccccCcccEEEEEECC
Confidence 3567889999999999999999654 47899999999999999999987 78999987643 1224567777777
Q ss_pred cChhHHHHHh--C-CeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 301 IEGESLLMAI--K-DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 301 ~~~~~~~~~L--~-gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
.+..++...| + ||.++.|.+|.++ .+..+|.+ +++|||+|+|||++||++++++|++.
T Consensus 355 ~~~~~v~~~L~~~~gI~v~~g~~c~~~------~~~~~g~~-----~~iRiS~~~ynt~~di~~l~~~l~~~ 415 (424)
T PLN02855 355 IHPTDLSTFLDQQHGVAIRSGHHCAQP------LHRYLGVN-----ASARASLYFYNTKEEVDAFIHALKDT 415 (424)
T ss_pred cCHHHHHHHhcccCCEEEechhhhhHH------HHHHhCCC-----CeEEEEeccCCCHHHHHHHHHHHHHH
Confidence 7777888887 4 9999999999753 34566664 78999999999999999999999964
|
|
| >PRK10874 cysteine sulfinate desulfinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=396.15 Aligned_cols=354 Identities=23% Similarity=0.351 Sum_probs=305.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCC-CCCcEEEeCCHHHHHHHHHHhcc
Q psy15216 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-DPREIIWTSGATESNNLAIKGAA 79 (2602)
Q Consensus 1 Ld~a~~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~-~~~~Iv~t~g~T~al~~~~~~l~ 79 (2602)
|||++++++|+.+++++.+++...+.+++.+.+..+......++++|+.+|+++|+ ++++|++++|+|+++++++.++.
T Consensus 23 ld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i~~~~~~t~~i~~~~~~~~ 102 (401)
T PRK10874 23 LDSAATALKPQAVIEATQQFYSLSAGNVHRSQFAAAQRLTARYEAAREQVAQLLNAPDAKNIVWTRGTTESINLVAQSYA 102 (401)
T ss_pred EeCCcccCCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCHHHHHHHHHHHhh
Confidence 79999999999999999999988778887766767778888999999999999999 78899999999999999999984
Q ss_pred cccccCCCEEEEcCCCCcccHHHHHHH-HhCCcEEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHH
Q psy15216 80 HFYKKRGKHIITVQTEHKSVLDSIRKL-ENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEI 158 (2602)
Q Consensus 80 ~~~~~~gd~Vlv~~~~~~s~~~~~~~~-~~~G~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I 158 (2602)
...+++||+|++++++|++....|..+ ++.|++++.++.++++.+|+++++++++++|++|+++|++||||.++|+++|
T Consensus 103 ~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~t~lv~i~~~~n~tG~~~~~~~i 182 (401)
T PRK10874 103 RPRLQPGDEIIVSEAEHHANLVPWLMVAQQTGAKVVKLPLGADRLPDVDLLPELITPRTRILALGQMSNVTGGCPDLARA 182 (401)
T ss_pred hccCCCcCEEEECCcchHHHHHHHHHHHHHhCCEEEEEecCCCCcCCHHHHHHhcCcCcEEEEEeCCcccccCcCCHHHH
Confidence 222479999999999999977666544 6779999999998888899999999999999999999999999999999999
Q ss_pred HHHHHhcCCEEEEecccccccccccCCCCCccEEEeccccccCCCCcEEEEEecCCCCcccceecCCC------------
Q psy15216 159 GELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGG------------ 226 (2602)
Q Consensus 159 ~~la~~~g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K~~Gp~G~G~l~~~~~~~~~l~~~~~g~~------------ 226 (2602)
+++|+++|+++++|++|+.|..++++..+++|++++|+||++||+|+|++++++++++.+.|...++.
T Consensus 183 ~~l~~~~g~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (401)
T PRK10874 183 ITLAHQAGMVVMVDGAQGAVHFPADVQALDIDFYAFSGHKLYGPTGIGVLYGKSELLEAMSPWQGGGKMLTEVSFDGFTP 262 (401)
T ss_pred HHHHHHcCCEEEEECCcccccccCCchhcCCCEEEEecccccCCCccEEEEEchHHHhcCCCeecCCcceEeeccCccCC
Confidence 99999999999999999999999998888999999999999999999999999998888877653332
Q ss_pred --ccccccccCcchhHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcccCh
Q psy15216 227 --HEYGLRSGTLATHQIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEG 303 (2602)
Q Consensus 227 --~~~~~~~gt~~~~~~~al~~al~~~-~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~ 303 (2602)
.+.+++.||+++.+++++.+|+++. ..+.+++.+++.++++++.+.|.+ +++++++.++. +.++.+.++..+.
T Consensus 263 ~~~~~~~e~Gt~~~~~~~al~~al~~l~~~g~~~~~~~~~~l~~~l~~~l~~-~~g~~~~~~~~---~~i~~~~~~~~~~ 338 (401)
T PRK10874 263 QSAPWRFEAGTPNVAGVIGLSAALEWLADIDINQAESWSRSLATLAEDALAK-LPGFRSFRCQD---SSLLAFDFAGVHH 338 (401)
T ss_pred CCChhhccCCCcCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc-CCCEEEeCCCC---CcEEEEEECCcCH
Confidence 2356788999999999999999964 456778899999999999999987 78998876543 2455566666666
Q ss_pred hHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 304 ESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 304 ~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
.++.+.| +||.+++|..|.. ..+..+|.. ++||||+++|||++||++++++|++.
T Consensus 339 ~~~~~~L~~~gI~v~~g~~~~~------~~~~~~g~~-----~~iRiS~~~~nt~edid~ll~al~~~ 395 (401)
T PRK10874 339 SDLVTLLAEYGIALRAGQHCAQ------PLLAALGVT-----GTLRASFAPYNTQSDVDALVNAVDRA 395 (401)
T ss_pred HHHHHHHHHCCcEEeccccchH------HHHHHhCCC-----CEEEEEecccCCHHHHHHHHHHHHHH
Confidence 7777666 7999999988864 244556654 79999999999999999999999863
|
|
| >TIGR03402 FeS_nifS cysteine desulfurase NifS | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-36 Score=388.02 Aligned_cols=366 Identities=48% Similarity=0.783 Sum_probs=320.3
Q ss_pred eeccC-CCCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhh
Q psy15216 1396 IVFKD-ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGA 1474 (2602)
Q Consensus 1396 v~L~~-~~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l 1474 (2602)
+|||+ ++++.++.+++++.+++...++||+. .+..+..+...++++|+.+++++|+++++|+||+|+|++++.++.++
T Consensus 1 ~yld~aa~~~~~~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~r~~la~~~g~~~~~i~~t~~~t~a~~~al~~~ 79 (379)
T TIGR03402 1 IYLDNNATTRVDPEVLEAMLPYFTEYFGNPSS-MHSFGGEVGKAVEEAREQVAKLLGAEPDEIIFTSGGTESDNTAIKSA 79 (379)
T ss_pred CcCCCcCCCCCCHHHHHHHHHHHHhcCCCCCc-ccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHHHHHH
Confidence 47775 45688999999999998877788886 45566777888999999999999999889999999999999999887
Q ss_pred hhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccCCceEEEEeccccccccccChHHH
Q psy15216 1475 AHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEI 1554 (2602)
Q Consensus 1475 ~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I 1554 (2602)
.. .+.+|++|+++..+|+++..++..++..|++++.++.++++.+|+++++++++++|+++++++++|+||.++|+++|
T Consensus 80 ~~-~~~~~~~vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~g~~~~~~l~~~i~~~~~lv~i~~~~n~tG~~~~~~~I 158 (379)
T TIGR03402 80 LA-AQPEKRHIITTAVEHPAVLSLCQHLEKQGYKVTYLPVDEEGRLDLEELRAAITDDTALVSVMWANNETGTIFPIEEI 158 (379)
T ss_pred HH-hcCCCCeEEEcccccHHHHHHHHHHHHcCCEEEEEccCCCCcCCHHHHHHhcCCCcEEEEEEcccCCeeecccHHHH
Confidence 41 12467899999999999988888877789999999988888899999999999999999999999999999999999
Q ss_pred HHHhhhcCCEEEEecccccCcccccCCCCCccEEEEccccccCCCceEEEEEecCCCCccccccccCCccccCCCCCcch
Q psy15216 1555 GELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLAT 1634 (2602)
Q Consensus 1555 ~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K~~gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~ 1634 (2602)
.++|++||+++++|++|++|..++++.++++|++++|+||++||+|+|+++++++. .+.|...|+.....++.||+++
T Consensus 159 ~~l~~~~g~~vivD~~~~~g~~~~~~~~~~~D~~~~s~~K~~gp~G~g~l~v~~~~--~~~p~~~g~~~~~~~~~gt~~~ 236 (379)
T TIGR03402 159 GEIAKERGALFHTDAVQAVGKIPIDLKEMNIDMLSLSGHKLHGPKGVGALYIRKGT--RFRPLLRGGHQERGRRAGTENV 236 (379)
T ss_pred HHHHHHcCCEEEEECcccccccccCcccCCCCEEEEcHHHcCCCCceEEEEECCCC--CCCCcccCCccCCCcCCCCccH
Confidence 99999999999999999999999999999999999999999999999999999764 3566666666666778999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecCCcHHHHHhc--CCEEEc
Q psy15216 1635 HQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDIAVS 1712 (2602)
Q Consensus 1635 ~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~v~ 1712 (2602)
+.++++.+++++...+++.+.++..++++++++.|.+.++++.+.+++..+.|.+..++++..+..++...| +||.++
T Consensus 237 ~~~~~l~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~v~ 316 (379)
T TIGR03402 237 PGIVGLGKAAELATEHLEEENTRVRALRDRLEAGLLARIPDARLNGDPTKRLPNTVNISFEYIEGEAILLLLDMEGICAS 316 (379)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhCCCEEEeCCCccCCCCEEEEEecCCCHHHHHHhhccCCEEEE
Confidence 999999999998877888889999999999999997437899888765545566788888877788888777 799999
Q ss_pred cccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1713 SGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1713 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
.|.+|..+...++..+..+|.......+.||+|+++|||.+||++++++|++.
T Consensus 317 ~g~~c~~~~~~~~~~~~~lg~~~~~~~~~vR~S~~~~~t~~di~~~~~~l~~~ 369 (379)
T TIGR03402 317 SGSACTSGSLEPSHVLRAMGVPHTAAHGSIRFSLSRYNTEEDIDYVLEVLPPI 369 (379)
T ss_pred chhhcCCCCCCcCHHHHHcCCChhhcCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 99999887666777888899865556689999999999999999999999973
|
Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403. |
| >PRK02948 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-36 Score=389.39 Aligned_cols=370 Identities=36% Similarity=0.535 Sum_probs=316.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhccc
Q psy15216 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAH 80 (2602)
Q Consensus 1 Ld~a~~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~ 80 (2602)
|||++++|+|+.+++++.+++...+++|+. .+..+......++++|+.+|+++|+++++|++++|+|++++.++.++..
T Consensus 4 ld~a~~~~~~~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~r~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~~ 82 (381)
T PRK02948 4 LDYAATTPMSKEALQTYQKAASQYFGNESS-LHDIGGTASSLLQVCRKTFAEMIGGEEQGIYFTSGGTESNYLAIQSLLN 82 (381)
T ss_pred ccCCCCCCCCHHHHHHHHHHHHhcCCCCcc-ccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHHHHHHHH
Confidence 799999999999999999999877788874 5666777778899999999999999989999999999999999888753
Q ss_pred ccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHH
Q psy15216 81 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGE 160 (2602)
Q Consensus 81 ~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~ 160 (2602)
...++|++|+++..+|+++..++..++..|++++.+++++++.+|++++++++++++++|+++|++||||.+.|+++|.+
T Consensus 83 ~~~~~g~~vv~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~lv~~~~~~n~tG~~~~~~~I~~ 162 (381)
T PRK02948 83 ALPQNKKHIITTPMEHASIHSYFQSLESQGYTVTEIPVDKSGLIRLVDLERAITPDTVLASIQHANSEIGTIQPIAEIGA 162 (381)
T ss_pred hccCCCCEEEECCcccHHHHHHHHHHHhCCCEEEEEeeCCCCCCCHHHHHHhcCCCCEEEEEECCcCCcEeehhHHHHHH
Confidence 22357899999999999999999888888999999998888889999999999999999999999999999999999999
Q ss_pred HHHhcCCEEEEecccccccccccCCCCCccEEEeccccccCCCCcEEEEEecCCCCcccceecCCCccccccccCcchhH
Q psy15216 161 LCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQ 240 (2602)
Q Consensus 161 la~~~g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K~~Gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~ 240 (2602)
+|+++|+++++|++|++|..++++.++++|++++|+||++||+|+|++++++++ .+.+...++..+.++.+||++.++
T Consensus 163 l~~~~~~~vivD~~~~~g~~~~~~~~~~~d~~~~s~~K~~gp~G~G~l~~~~~~--~~~~~~~~~~~~~~~~~~t~~~~~ 240 (381)
T PRK02948 163 LLKKYNVLFHSDCVQTFGKLPIDVFEMGIDSLSVSAHKIYGPKGVGAVYINPQV--RWKPVFPGTTHEKGFRPGTVNVPG 240 (381)
T ss_pred HHHHcCCEEEEEChhhccccccCcccCCCCEEEecHHhcCCCCcEEEEEEcCCC--CCCCcccCCCCCCCcCCCCccHHH
Confidence 999999999999999999999999899999999999999999999999998875 233333344445667889999999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEe--CCCCCCCCceEEEEEcccChhHHHHHh--CCeEEc
Q psy15216 241 IVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYIN--GDMNNRIPHNLNISFNFIEGESLLMAI--KDIAVS 316 (2602)
Q Consensus 241 ~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~v~ 316 (2602)
++++.++++...++.++.++++.++++++++.|++ + ++++. ++.....+.++.+.++..+..++...| +||.++
T Consensus 241 ~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-~~~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~gI~v~ 318 (381)
T PRK02948 241 IAAFLTAAENILKNMQEESLRFKELRSYFLEQIQT-L-PLPIEVEGHSTSCLPHIIGVTIKGIEGQYTMLECNRRGIAIS 318 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C-CCCEEEeCCCccCcCCEEEEEeCCCCHHHHHHhcccCCEEEE
Confidence 99999999976567889999999999999999987 3 44333 222334455666666766677777666 799999
Q ss_pred ccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhhhhhhhhh
Q psy15216 317 SGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKEFFMSYS 376 (2602)
Q Consensus 317 ~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~~~~~~y~ 376 (2602)
.|.+|..+..+|++.+..+|.+.....+++|||+++|+|++|+++++++|++. +...|+
T Consensus 319 ~g~~c~~~~~~p~~~~~~~~~~~~~~~~~lRis~~~~~t~~di~~l~~~l~~~-~~~~~~ 377 (381)
T PRK02948 319 TGSACQVGKQEPSKTMLAIGKTYEEAKQFVRFSFGQQTTKDQIDTTIHALETI-GNQFYR 377 (381)
T ss_pred chHhcCCCCCCCCHHHHHcCCChHHhCceEEEEcCCCCCHHHHHHHHHHHHHH-HHHHhc
Confidence 99999887778899999999754444689999999999999999999999974 334553
|
|
| >PRK14012 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-36 Score=391.60 Aligned_cols=368 Identities=70% Similarity=1.135 Sum_probs=322.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHh--hhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhc
Q psy15216 1 MDYSATTPIDPRVVDKMIPYLR--VQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGA 78 (2602)
Q Consensus 1 Ld~a~~~~~p~~v~~a~~~~l~--~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l 78 (2602)
|||++++|+|+.+++++.+++. ..+++|+...+..++...+.++++|+.+++++|++++++++++|+|+|+++++.++
T Consensus 7 ld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~g~~~~~v~~~~g~t~al~~~l~~l 86 (404)
T PRK14012 7 LDYSATTPVDPRVAEKMMPYLTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLIGADPREIVFTSGATESDNLAIKGA 86 (404)
T ss_pred ecCcCCCCCCHHHHHHHHHHHHhcccCcCCCchhhHHHHHHHHHHHHHHHHHHHHcCcCcCeEEEeCCHHHHHHHHHHHH
Confidence 7999999999999999999887 56777765444444445678899999999999998889999999999999998877
Q ss_pred ccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHH
Q psy15216 79 AHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEI 158 (2602)
Q Consensus 79 ~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I 158 (2602)
....+++||+|++++++|+++..++..+++.|++++++++++++.+|+++|+++++++|+++++++++|+||.+.|+++|
T Consensus 87 ~~~~~~~gd~Vi~~~~~~~s~~~~~~~~~~~g~~~~~v~~~~~g~~d~~~l~~~i~~~t~lv~~~~~~n~tG~~~~~~~I 166 (404)
T PRK14012 87 AHFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLDPQSNGIIDLEKLEAAMRDDTILVSIMHVNNEIGVIQDIAAI 166 (404)
T ss_pred HHhhcCCCCEEEEecCccHHHHHHHHHHHhCCCEEEEEccCCCCcCCHHHHHHhcCCCCEEEEEECcCCCccchhhHHHH
Confidence 43234789999999999999988888777779999999998888999999999999999999999999999999999999
Q ss_pred HHHHHhcCCEEEEecccccccccccCCCCCccEEEeccccccCCCCcEEEEEecCCCCcccceecCCCccccccccCcch
Q psy15216 159 GELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLAT 238 (2602)
Q Consensus 159 ~~la~~~g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K~~Gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~ 238 (2602)
.++||++|+++++|++|++|..++++..+++|++++|+||++||.|+|+++++++...++.|...|++...+++.|++++
T Consensus 167 ~~la~~~g~~vivD~a~~~g~~~~~~~~~~~D~~~~s~~K~~gp~g~G~l~~~~~~~~~~~~~~~g~~~~~~~~~gt~~~ 246 (404)
T PRK14012 167 GEICRERGIIFHVDAAQSVGKVPIDLSKLKVDLMSFSAHKIYGPKGIGALYVRRKPRVRLEAQMHGGGHERGMRSGTLPT 246 (404)
T ss_pred HHHHHHcCCEEEEEcchhcCCcccCcccCCCCEEEEehhhccCCCceEEEEEecCCCCCCCceecCCCccCCccCCCcCH
Confidence 99999999999999999999999999888999999999999999999999999887667777777766666688899999
Q ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcccChhHHHHHhCCeEEccc
Q psy15216 239 HQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIKDIAVSSG 318 (2602)
Q Consensus 239 ~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~gI~v~~g 318 (2602)
..++++.+|+++...+.+.+.++.+.+++++.+.|++ ++++.++++...+.+....++|...+..++...|+++.++.|
T Consensus 247 ~~~~~l~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~g 325 (404)
T PRK14012 247 HQIVGMGEAARIAKEEMATENERIRALRDRLWNGIKD-IEEVYLNGDLEQRVPGNLNVSFNYVEGESLIMALKDLAVSSG 325 (404)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhc-CCCEEEeCCccccCCCEEEEEEeCcCHHHHHHhCCCeEEEch
Confidence 9999999999977767788899999999999999987 788887754443445556677765566778888899999999
Q ss_pred ccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 319 SACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 319 ~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
..|.+.+.+|.+.+..+++.+....+.||+|+++++|++|+++++++|++.
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~~dvd~~~~~l~~~ 376 (404)
T PRK14012 326 SACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYAIELVRKS 376 (404)
T ss_pred hhhCCCCCCCCHHHHHcCCChhhcCceEEEEecCCCCHHHHHHHHHHHHHH
Confidence 999988888888888899887777899999999999999999999999974
|
|
| >TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-36 Score=393.33 Aligned_cols=354 Identities=23% Similarity=0.324 Sum_probs=302.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCC-CCcEEEeCCHHHHHHHHHHhcc
Q psy15216 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYAD-PREIIWTSGATESNNLAIKGAA 79 (2602)
Q Consensus 1 Ld~a~~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~-~~~Iv~t~g~T~al~~~~~~l~ 79 (2602)
|||++++|+|+.+++++.+++...+++|+.+.+..+......++++|+.+++++|++ +++|++|+|+|+++++++.++.
T Consensus 20 ld~a~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i~~t~g~t~~l~~~~~~~~ 99 (398)
T TIGR03392 20 LDSAATALKPQAVIDATQQFYRLSSGTVHRSQHQQAQSLTARYELARQQVARFLNAPDAENIVWTRGTTESINLVAQSYA 99 (398)
T ss_pred eeCccccCCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCChHHHHHHHHHHhh
Confidence 799999999999999999998877778876566666677788999999999999994 7899999999999999999983
Q ss_pred cccccCCCEEEEcCCCCcccHHHHHH-HHhCCcEEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHH
Q psy15216 80 HFYKKRGKHIITVQTEHKSVLDSIRK-LENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEI 158 (2602)
Q Consensus 80 ~~~~~~gd~Vlv~~~~~~s~~~~~~~-~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I 158 (2602)
...+++||+|++++++|++....+.. ++..|++++.++.++++.+|+++++++++++|++|+++|++||||.+.|+++|
T Consensus 100 ~~~~~~gd~Vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~l~~~i~~~t~lv~i~~~~n~tG~~~~~~~i 179 (398)
T TIGR03392 100 RPRLQPGDEIIVSEAEHHANLIPWLMVAQQTGAKVVKLPIGADLLPDIRQLPELLTPRTRILALGQMSNVTGGCPDLARA 179 (398)
T ss_pred hccCCCCCEEEECCcchhHHHHHHHHHHHHcCcEEEEEecCCCCCcCHHHHHHHhccCceEEEEECccccccccCCHHHH
Confidence 21247999999999999997666654 46779999999998888899999999999999999999999999999999999
Q ss_pred HHHHHhcCCEEEEecccccccccccCCCCCccEEEeccccccCCCCcEEEEEecCCCCcccceecCCC------------
Q psy15216 159 GELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGG------------ 226 (2602)
Q Consensus 159 ~~la~~~g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K~~Gp~G~G~l~~~~~~~~~l~~~~~g~~------------ 226 (2602)
+++||++|+++++|++|+.+..++++..+++|++++|+||++||+|+|++++++++++.+.|...++.
T Consensus 180 ~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~d~~~~s~~K~~gp~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (398)
T TIGR03392 180 ITLAHQYGAVVVVDGAQGVVHGPPDVQALDIDFYAFSGHKLYGPTGIGVLYGKTELLEAMPPWQGGGKMLSHVSFDGFIP 259 (398)
T ss_pred HHHHHHcCCEEEEEhhhhcCCCCCChhhcCCCEEEEecccccCCCceEEEEEcHHHHhhCCCeecCCceEeecccccccc
Confidence 99999999999999999999988888888999999999999999999999999988888877653322
Q ss_pred --ccccccccCcchhHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcccCh
Q psy15216 227 --HEYGLRSGTLATHQIVGMGEAFRLAR-IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEG 303 (2602)
Q Consensus 227 --~~~~~~~gt~~~~~~~al~~al~~~~-~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~ 303 (2602)
.+.+++.||+++.+++++.+|+++.. .+++++.++..++++++++.|.+ +++++++.++. +.++.+.++..+.
T Consensus 260 ~~~~~~~e~GT~~~~~~~a~~~al~~l~~~g~~~i~~~~~~l~~~l~~~l~~-l~g~~~~~~~~---~~i~~~~~~~~~~ 335 (398)
T TIGR03392 260 QAVPHRFEAGTPNIAGVIGLSAALEWLTDIDIAAAEAWSVSLADLAEERLAQ-LPGFRSFRCPG---SSLLAFDFAGVHH 335 (398)
T ss_pred CCChhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc-CCCeEEeCCCC---CcEEEEEeCCcCH
Confidence 13567889999999999999999654 45788899999999999999987 78988875432 3455556666667
Q ss_pred hHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 304 ESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 304 ~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
.++...| +||.++.|.+|.. +.+..+|.. ++||||+|+|||++|+++++++|++.
T Consensus 336 ~~l~~~L~~~gI~v~~g~~~~~------~~~~~~g~~-----~~iRvS~~~~~t~~ei~~l~~~l~~~ 392 (398)
T TIGR03392 336 SDLAALLAESGIALRAGQHCAQ------PLMAALGVS-----GTLRASFAPYNTQQDVDALVDAVGAA 392 (398)
T ss_pred HHHHHHHHhCCEEEecCccchH------HHHHHhCCC-----CEEEEEeeccCCHHHHHHHHHHHHHH
Confidence 7777777 7999999998874 244555643 79999999999999999999999863
|
Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems. |
| >PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=389.15 Aligned_cols=356 Identities=22% Similarity=0.329 Sum_probs=303.9
Q ss_pred eeeccCC-CCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCC-CCCcEEEeCCHHHHHHHHHH
Q psy15216 1395 NIVFKDA-TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-DPREIIWTSGATESNNLAIK 1472 (2602)
Q Consensus 1395 ~v~L~~~-~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~-~~~~iv~t~gaT~al~~al~ 1472 (2602)
.+|||++ +++++..+++++.+++...++|++++.+..+......++++|+.+++++|+ ++++|+||+|+|++++.++.
T Consensus 24 ~iYld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~~l~~~~~ 103 (406)
T PRK09295 24 LAYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKQAALFINARSAEELVFVRGTTEGINLVAN 103 (406)
T ss_pred eEEEeCcccccCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHHHHHHHHH
Confidence 5899864 468889999999999987777887767777788888999999999999998 67899999999999999998
Q ss_pred hhhhhhccCCCEEEEcCCCCcchHHHHHHH-HhCCcEEEEeccCCCCCcChhHHHhhccCCceEEEEeccccccccccCh
Q psy15216 1473 GAAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPI 1551 (2602)
Q Consensus 1473 ~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~-~~~G~~v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l 1551 (2602)
++....+++||+|++++++|++...++..+ +..|++++.++.++++.+|+++|+++++++|++|+++|++||||.++|+
T Consensus 104 ~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~t~lv~l~~~~n~tG~~~~~ 183 (406)
T PRK09295 104 SWGNSNVRAGDNIIISEMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPALFDERTRLLAITHVSNVLGTENPL 183 (406)
T ss_pred HhhhhcCCCcCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecCCCCCCCHHHHHHhcCCCcEEEEEecchhcccccCCH
Confidence 863223589999999999999877766554 5679999999998888899999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCEEEEecccccCcccccCCCCCccEEEEccccccCCCceEEEEEecCCCCccccccccCCc--------
Q psy15216 1552 LEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGH-------- 1623 (2602)
Q Consensus 1552 ~~I~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K~~gp~G~G~l~~~~~~~~~l~~~~~g~~~-------- 1623 (2602)
++|.++|++||+++++|++|+.|..++++.++++|++++|+||++||+|+|++++++++++.+.+...|+..
T Consensus 184 ~~i~~~~~~~~~~vivD~a~~~g~~~~~~~~~~~D~~~~s~~K~~gp~G~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~ 263 (406)
T PRK09295 184 AEMIALAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKEALLQEMPPWEGGGSMIATVSLTE 263 (406)
T ss_pred HHHHHHHHHcCCEEEEEcccccCccccCchhcCCCEEEeehhhccCCCCcEEEEEchHhHhhCCCcccCCceeeeeecCC
Confidence 999999999999999999999999999998899999999999999999999999999887777665443321
Q ss_pred -------cccCCCCCcchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEe
Q psy15216 1624 -------EYGLRSGTLATHQIVGMGEAFRLARI-EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN 1695 (2602)
Q Consensus 1624 -------~~~~~~gt~~~~~~~al~~aL~~~~~-~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~ 1695 (2602)
+.+++.||+++..++++.+|+++... +++.+.++..++++++++.|.+ ++++.+.++.. ...+..|.++
T Consensus 264 ~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~-~~~~~~~~~~~--~~~iv~~~~~ 340 (406)
T PRK09295 264 GTTWAKAPWRFEAGTPNTGGIIGLGAALDYVSALGLNNIAEYEQNLMHYALSQLES-VPDLTLYGPQN--RLGVIAFNLG 340 (406)
T ss_pred ccccCCchhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc-CCCEEEeCCCC--CceEEEEEEC
Confidence 14578899999999999999996654 7889999999999999999987 78999887532 2345566666
Q ss_pred cCCcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1696 FIEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1696 ~~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
..+..++...| +||.++.|.+|..+ ....++.. +++|+|+++|||.+|||+++++|++
T Consensus 341 ~~~~~~~~~~L~~~gI~v~~g~~c~~~------~~~~~~~~-----~~iRiS~~~ynt~~did~l~~~l~~ 400 (406)
T PRK09295 341 KHHAYDVGSFLDNYGIAVRTGHHCAMP------LMAYYNVP-----AMCRASLAMYNTHEEVDRLVAGLQR 400 (406)
T ss_pred CcCHHHHHHHHHhCCeEEeccccchHH------HHHHHCCC-----CEEEEEccCCCCHHHHHHHHHHHHH
Confidence 55666676666 79999999988643 33445543 6899999999999999999999987
|
|
| >TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-35 Score=380.56 Aligned_cols=366 Identities=45% Similarity=0.691 Sum_probs=314.2
Q ss_pred eeccC-CCCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCC-CCCcEEEeCCHHHHHHHHHHh
Q psy15216 1396 IVFKD-ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-DPREIIWTSGATESNNLAIKG 1473 (2602)
Q Consensus 1396 v~L~~-~~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~-~~~~iv~t~gaT~al~~al~~ 1473 (2602)
+|||+ +++++++.+++++.+++...++||++ .+.++......+++.++.+++.+++ ++++|++|+|+|++++.++.+
T Consensus 1 ~yld~aa~~~~~~~v~~~~~~~~~~~~~n~~~-~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~i~~t~g~teal~~~~~~ 79 (382)
T TIGR03403 1 VYLDNNATTMLDPKVKELMDPFFCDIYGNPNS-LHQFGTATHPAIAEALDKLYKGINARDLDDIIITSCATESNNWVLKG 79 (382)
T ss_pred CcccCcCCCCCCHHHHHHHHHHHHhcCcCCcc-ccHHHHHHHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHHHHHHHHHH
Confidence 47765 55688899999999999988899985 5666666666777888888888887 678999999999999999998
Q ss_pred hhhh-hccC-CCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccCCceEEEEeccccccccccCh
Q psy15216 1474 AAHF-YKKR-GKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPI 1551 (2602)
Q Consensus 1474 l~~~-~~~~-gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l 1551 (2602)
+... ..++ +++|+++..+||++..++..++..|++++++++++++.+|+++++++++++|+++++++++||||.++|+
T Consensus 80 ~~~~~~~~~~~~~vi~~~~e~ps~~~~~~~~~~~G~~v~~v~~~~~g~~d~~~l~~~i~~~t~lv~~~~~~n~tG~~~~~ 159 (382)
T TIGR03403 80 VYFDEILKGGKNHIITTEVEHPAVRATCAFLESLGVEVTYLPINEQGTITAEQVREAITEKTALVSVMWANNETGMIFPI 159 (382)
T ss_pred HHHhhcccCCCCEEEEcCCccHHHHHHHHHHHHCCCEEEEEecCCCCCCCHHHHHHhcccCCeEEEEEcccCCCccccCH
Confidence 7411 1134 5789999999999999988887789999999998888899999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCEEEEecccccCcccccCCCCCccEEEEccccccCCCceEEEEEecCCCCccccccccCCccccCCCCC
Q psy15216 1552 LEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGT 1631 (2602)
Q Consensus 1552 ~~I~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K~~gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt 1631 (2602)
++|.++|++||+++++|++|++|..++++.++++|++++|+||++||+|+|+++++++. .+.|...|+....+++.||
T Consensus 160 ~~I~~la~~~g~~~ivD~a~~~g~~~~~~~~~~~D~~~~s~~K~~gp~G~g~l~vr~~~--~~~p~~~g~~~~~~~~~gt 237 (382)
T TIGR03403 160 KEIGEICKERGVLFHTDAVQAIGKIPVDVQKAGVDFLSFSAHKFHGPKGVGGLYIRKGV--ELTPLFHGGEHMGGRRSGT 237 (382)
T ss_pred HHHHHHHHHcCCEEEEechhhcCCCccCccccCCCEEEEcchhhCCCCceEEEEECCCC--CCCCcccCCCCCCCcccCC
Confidence 99999999999999999999999999999999999999999999999999999999764 3556555555556678899
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecCCcHHHHHhc--CCE
Q psy15216 1632 LATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDI 1709 (2602)
Q Consensus 1632 ~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI 1709 (2602)
++.+.++++.+++++..+.++...++.+.++++++++|.+ ++++.+.++...+.+++..+.+++.+...+...| +||
T Consensus 238 ~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI 316 (382)
T TIGR03403 238 LNVPYIVAMGEAMRLANEYLDFEKSHVRRLRDRLEDALLE-LPDVFVVGDREHRVPNTILISIKGVEGEAMLWDLNKAGI 316 (382)
T ss_pred cChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc-CCCEEEECCCCCCcCCEEEEEeCCCCHHHHHHhhccCCE
Confidence 9999999999999977777888899999999999999987 7899998765555677777887776777777666 899
Q ss_pred EEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1710 AVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1710 ~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
.++.|++|......+++++..+|...+...+.||+|++++||.+|||+++++|++.
T Consensus 317 ~v~~g~~c~~~~~~~~~v~~~~g~~~~~~~~~iR~s~~~~~t~~did~~~~~l~~~ 372 (382)
T TIGR03403 317 AASTGSACASEDLEANPVMVAIGADKELAHTAIRLSLSRFTTEEEIDYTIEVFKKA 372 (382)
T ss_pred EEEchhccCCCCCCcCHHHHHcCCChHHhCeeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 99999999876566678888888765556689999999999999999999999873
|
Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation. |
| >PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-35 Score=383.39 Aligned_cols=359 Identities=26% Similarity=0.344 Sum_probs=305.0
Q ss_pred eeeccCC-CCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCC-CCcEEEeCCHHHHHHHHHH
Q psy15216 1395 NIVFKDA-TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYAD-PREIIWTSGATESNNLAIK 1472 (2602)
Q Consensus 1395 ~v~L~~~-~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~-~~~iv~t~gaT~al~~al~ 1472 (2602)
.+|||++ ..+.|..+++++.+++.....+++++.+..+......++++|+.+++++|++ +++|+||+|+|++++.++.
T Consensus 33 ~iyLd~a~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~al~~i~~ 112 (424)
T PLN02855 33 LVYLDNAATSQKPAAVLDALQDYYEEYNSNVHRGIHALSAKATDAYELARKKVAAFINASTSREIVFTRNATEAINLVAY 112 (424)
T ss_pred eEEeeCccccCCCHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCHHHHHHHHHH
Confidence 5889754 4678888999999999877778876566666666778899999999999995 5799999999999999998
Q ss_pred hhhhhhccCCCEEEEcCCCCcchHHHHHHH-HhCCcEEEEeccCCCCCcChhHHHhhccCCceEEEEeccccccccccCh
Q psy15216 1473 GAAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPI 1551 (2602)
Q Consensus 1473 ~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~-~~~G~~v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l 1551 (2602)
++....+++||+|++++++|++....+..+ +..|++++.+++++++.+|+++++++++++|++|+++|++|+||.++|+
T Consensus 113 ~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~a~~~g~~v~~v~~~~~~~~~~~~l~~~i~~~t~lv~i~~~~n~tG~~~~~ 192 (424)
T PLN02855 113 TWGLANLKPGDEVILSVAEHHSNIVPWQLVAQKTGAVLKFVGLTPDEVLDVEQLKELLSEKTKLVATHHVSNVLGSILPV 192 (424)
T ss_pred HhhhhcCCCcCEEEECCCccHHHHHHHHHHHHHcCCEEEEEecCCCCCcCHHHHHHHhccCceEEEEeCccccccccCCH
Confidence 752112479999999999999987777655 5669999999988777799999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCEEEEecccccCcccccCCCCCccEEEEccccccCCCceEEEEEecCCCCccccccccCCc--------
Q psy15216 1552 LEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGH-------- 1623 (2602)
Q Consensus 1552 ~~I~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K~~gp~G~G~l~~~~~~~~~l~~~~~g~~~-------- 1623 (2602)
++|.++|++||+++++|++|+.|..++++.++++|++++|+||++||+|+|++++++++++.+.|...||..
T Consensus 193 ~~I~~l~~~~g~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~G~G~l~~~~~~~~~~~p~~~g~~~~~~~~~~~ 272 (424)
T PLN02855 193 EDIVHWAHAVGAKVLVDACQSVPHMPVDVQTLGADFLVASSHKMCGPTGIGFLWGKSDLLESMPPFLGGGEMISDVFLDH 272 (424)
T ss_pred HHHHHHHHHcCCEEEEEhhhhcCCcCCCchhcCCCEEEeecccccCCCccEEEEEchhhhhcCCCEecCCCceeeeecCc
Confidence 999999999999999999999999999999899999999999999999999999999988888776544432
Q ss_pred ------cccCCCCCcchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCC---CCCCceEEEE
Q psy15216 1624 ------EYGLRSGTLATHQIVGMGEAFRLAR-IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMN---NRIPHNLNIS 1693 (2602)
Q Consensus 1624 ------~~~~~~gt~~~~~~~al~~aL~~~~-~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~---~~~~~~~~~~ 1693 (2602)
+.+++.||+++..++++.++++++. .+++++.++..++++++++.|.+ ++++.+.++.. ...+.+..|.
T Consensus 273 ~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~-~~g~~i~~~~~~~~~~r~~~v~~~ 351 (424)
T PLN02855 273 STYAPPPSRFEAGTPAIGEAIGLGAAIDYLSEIGMDRIHEYEVELGTYLYEKLSS-VPGVRIYGPKPSEGVGRAALCAFN 351 (424)
T ss_pred cccCCChhhccCCChHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc-CCCEEEeCCCcccccCcccEEEEE
Confidence 3468899999999999999999655 47999999999999999999987 78999987543 1234566777
Q ss_pred EecCCcHHHHHhc--C-CEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1694 FNFIEGESLLMAI--K-DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1694 ~~~~~~~~~~~~L--~-gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
+++.+..++...| + ||.++.|.+|..+ ....+|.. ++||+|+++|||.+||++++++|++.
T Consensus 352 ~~~~~~~~v~~~L~~~~gI~v~~g~~c~~~------~~~~~g~~-----~~iRiS~~~ynt~~di~~l~~~l~~~ 415 (424)
T PLN02855 352 VEGIHPTDLSTFLDQQHGVAIRSGHHCAQP------LHRYLGVN-----ASARASLYFYNTKEEVDAFIHALKDT 415 (424)
T ss_pred ECCcCHHHHHHHhcccCCEEEechhhhhHH------HHHHhCCC-----CeEEEEeccCCCHHHHHHHHHHHHHH
Confidence 7766677787777 4 9999999988643 23445554 68999999999999999999999973
|
|
| >PRK14012 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=376.58 Aligned_cols=370 Identities=68% Similarity=1.112 Sum_probs=319.0
Q ss_pred eeeccCCC-CCCCHHHHHHHHHHHh--hccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHH
Q psy15216 1395 NIVFKDAT-TPIDPRVVDKMIPYLR--VQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAI 1471 (2602)
Q Consensus 1395 ~v~L~~~~-~~~~~~v~eal~~~l~--~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al 1471 (2602)
.+|||++. ++.++.+.+++.+++. ..+++|+++.+..++.....++++|+.+++++|++++++++++|+|+|+++++
T Consensus 4 ~iyld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~g~~~~~v~~~~g~t~al~~~l 83 (404)
T PRK14012 4 PIYLDYSATTPVDPRVAEKMMPYLTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLIGADPREIVFTSGATESDNLAI 83 (404)
T ss_pred eEEecCcCCCCCCHHHHHHHHHHHHhcccCcCCCchhhHHHHHHHHHHHHHHHHHHHHcCcCcCeEEEeCCHHHHHHHHH
Confidence 37887544 6888999999999987 56778876444444445677899999999999998889999999999999998
Q ss_pred HhhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccCCceEEEEeccccccccccCh
Q psy15216 1472 KGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPI 1551 (2602)
Q Consensus 1472 ~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l 1551 (2602)
.++....+++||+|++++++|+++..++..+...|+++++++.++++.+|+++|+++|+++|++|++++++|+||.+.|+
T Consensus 84 ~~l~~~~~~~gd~Vi~~~~~~~s~~~~~~~~~~~g~~~~~v~~~~~g~~d~~~l~~~i~~~t~lv~~~~~~n~tG~~~~~ 163 (404)
T PRK14012 84 KGAAHFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLDPQSNGIIDLEKLEAAMRDDTILVSIMHVNNEIGVIQDI 163 (404)
T ss_pred HHHHHhhcCCCCEEEEecCccHHHHHHHHHHHhCCCEEEEEccCCCCcCCHHHHHHhcCCCCEEEEEECcCCCccchhhH
Confidence 88753334789999999999999988888776679999999998888899999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCEEEEecccccCcccccCCCCCccEEEEccccccCCCceEEEEEecCCCCccccccccCCccccCCCCC
Q psy15216 1552 LEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGT 1631 (2602)
Q Consensus 1552 ~~I~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K~~gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt 1631 (2602)
++|.++|++||+++++|++|++|..++++..+++|++++|+||++||.|+|+++++++...++.+...|++...+++.||
T Consensus 164 ~~I~~la~~~g~~vivD~a~~~g~~~~~~~~~~~D~~~~s~~K~~gp~g~G~l~~~~~~~~~~~~~~~g~~~~~~~~~gt 243 (404)
T PRK14012 164 AAIGEICRERGIIFHVDAAQSVGKVPIDLSKLKVDLMSFSAHKIYGPKGIGALYVRRKPRVRLEAQMHGGGHERGMRSGT 243 (404)
T ss_pred HHHHHHHHHcCCEEEEEcchhcCCcccCcccCCCCEEEEehhhccCCCceEEEEEecCCCCCCCceecCCCccCCccCCC
Confidence 99999999999999999999999999899888999999999999999999999999887666777666766656688899
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecCCcHHHHHhcCCEEE
Q psy15216 1632 LATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIKDIAV 1711 (2602)
Q Consensus 1632 ~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~L~gI~v 1711 (2602)
+++..+.++.+++.+.........++...+++++.+.|.+ ++++.+.++.....+....+.|...+..++...|+++.+
T Consensus 244 ~~~~~~~~l~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i 322 (404)
T PRK14012 244 LPTHQIVGMGEAARIAKEEMATENERIRALRDRLWNGIKD-IEEVYLNGDLEQRVPGNLNVSFNYVEGESLIMALKDLAV 322 (404)
T ss_pred cCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhc-CCCEEEeCCccccCCCEEEEEEeCcCHHHHHHhCCCeEE
Confidence 9999999999999977777788889999999999999987 788887754333445556677775566777778899999
Q ss_pred ccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1712 SSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1712 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
+.|.+|.+.+.++.+....++..+....+.||+|+++++|.+|+|+++++|++.
T Consensus 323 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~~dvd~~~~~l~~~ 376 (404)
T PRK14012 323 SSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYAIELVRKS 376 (404)
T ss_pred EchhhhCCCCCCCCHHHHHcCCChhhcCceEEEEecCCCCHHHHHHHHHHHHHH
Confidence 999999887777788777888877777899999999999999999999999973
|
|
| >PRK10874 cysteine sulfinate desulfinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-35 Score=380.21 Aligned_cols=357 Identities=23% Similarity=0.347 Sum_probs=302.6
Q ss_pred ceeeeccCCC-CCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCC-CCCcEEEeCCHHHHHHHH
Q psy15216 1393 YTNIVFKDAT-TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-DPREIIWTSGATESNNLA 1470 (2602)
Q Consensus 1393 ~~~v~L~~~~-~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~-~~~~iv~t~gaT~al~~a 1470 (2602)
...+|||++. ++.|..+++++.+++...+++++++.|..+..+...++++|+.+++++|+ ++++|++|+|+|++++++
T Consensus 18 ~~~~yld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i~~~~~~t~~i~~~ 97 (401)
T PRK10874 18 DAGVYLDSAATALKPQAVIEATQQFYSLSAGNVHRSQFAAAQRLTARYEAAREQVAQLLNAPDAKNIVWTRGTTESINLV 97 (401)
T ss_pred CceEEEeCCcccCCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCHHHHHHHH
Confidence 3568998644 67888999999999988788888767777788889999999999999999 788999999999999999
Q ss_pred HHhhhhhhccCCCEEEEcCCCCcchHHHHHHH-HhCCcEEEEeccCCCCCcChhHHHhhccCCceEEEEecccccccccc
Q psy15216 1471 IKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQ 1549 (2602)
Q Consensus 1471 l~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~-~~~G~~v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~ 1549 (2602)
+.++....+++||+|++++++|++....+..+ +..|++++.++.+.++.+|+++++++++++|++|+++|++||||.++
T Consensus 98 ~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~t~lv~i~~~~n~tG~~~ 177 (401)
T PRK10874 98 AQSYARPRLQPGDEIIVSEAEHHANLVPWLMVAQQTGAKVVKLPLGADRLPDVDLLPELITPRTRILALGQMSNVTGGCP 177 (401)
T ss_pred HHHhhhccCCCcCEEEECCcchHHHHHHHHHHHHHhCCEEEEEecCCCCcCCHHHHHHhcCcCcEEEEEeCCcccccCcC
Confidence 99984222479999999999999976666544 66799999999988888999999999999999999999999999999
Q ss_pred ChHHHHHHhhhcCCEEEEecccccCcccccCCCCCccEEEEccccccCCCceEEEEEecCCCCccccccccCC-------
Q psy15216 1550 PILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGG------- 1622 (2602)
Q Consensus 1550 ~l~~I~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K~~gp~G~G~l~~~~~~~~~l~~~~~g~~------- 1622 (2602)
|+++|.++|+++|+++++|++|++|..++++..+++|++++|+||++||+|+|++++++++++.+.+...++.
T Consensus 178 ~~~~i~~l~~~~g~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (401)
T PRK10874 178 DLARAITLAHQAGMVVMVDGAQGAVHFPADVQALDIDFYAFSGHKLYGPTGIGVLYGKSELLEAMSPWQGGGKMLTEVSF 257 (401)
T ss_pred CHHHHHHHHHHcCCEEEEECCcccccccCCchhcCCCEEEEecccccCCCccEEEEEchHHHhcCCCeecCCcceEeecc
Confidence 9999999999999999999999999999998888999999999999999999999999998888776543321
Q ss_pred -------ccccCCCCCcchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEE
Q psy15216 1623 -------HEYGLRSGTLATHQIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISF 1694 (2602)
Q Consensus 1623 -------~~~~~~~gt~~~~~~~al~~aL~~~-~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~ 1694 (2602)
.+.+++.||+++..++++.+|++++ ..+...+.++..++++++++.|.+ ++++.+..++. +.+..+.+
T Consensus 258 ~~~~~~~~~~~~e~Gt~~~~~~~al~~al~~l~~~g~~~~~~~~~~l~~~l~~~l~~-~~g~~~~~~~~---~~i~~~~~ 333 (401)
T PRK10874 258 DGFTPQSAPWRFEAGTPNVAGVIGLSAALEWLADIDINQAESWSRSLATLAEDALAK-LPGFRSFRCQD---SSLLAFDF 333 (401)
T ss_pred CccCCCCChhhccCCCcCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc-CCCEEEeCCCC---CcEEEEEE
Confidence 2356788999999999999999965 456778889999999999999987 78988775433 23455566
Q ss_pred ecCCcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1695 NFIEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1695 ~~~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
+..+..++...| +||.+++|..|..+ ....+|.. ++||+|+++|||.+||++++++|++
T Consensus 334 ~~~~~~~~~~~L~~~gI~v~~g~~~~~~------~~~~~g~~-----~~iRiS~~~~nt~edid~ll~al~~ 394 (401)
T PRK10874 334 AGVHHSDLVTLLAEYGIALRAGQHCAQP------LLAALGVT-----GTLRASFAPYNTQSDVDALVNAVDR 394 (401)
T ss_pred CCcCHHHHHHHHHHCCcEEeccccchHH------HHHHhCCC-----CEEEEEecccCCHHHHHHHHHHHHH
Confidence 655566776666 89999999888642 33445543 7999999999999999999999987
|
|
| >TIGR01979 sufS cysteine desulfurases, SufS subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-35 Score=381.63 Aligned_cols=356 Identities=27% Similarity=0.404 Sum_probs=303.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCC-CCcEEEeCCHHHHHHHHHHhcc
Q psy15216 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYAD-PREIIWTSGATESNNLAIKGAA 79 (2602)
Q Consensus 1 Ld~a~~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~-~~~Iv~t~g~T~al~~~~~~l~ 79 (2602)
||+++++++|+.+.+++.+++...+++|+.+.+..+......++++|+.+++++|++ +++|++++|+|+++++++.++.
T Consensus 22 ld~~~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~~~~~~~~v~~~~g~t~~l~~~~~~~~ 101 (403)
T TIGR01979 22 LDSAATSQKPQQVIDAVAEYYRNSNANVHRGIHTLSVRATEAYEAVREKVAKFINAASDEEIVFTRGTTESINLVAYSWG 101 (403)
T ss_pred EeCccccCCCHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHHHhh
Confidence 799999999999999999998887788876555556667778999999999999997 6799999999999999998874
Q ss_pred cccccCCCEEEEcCCCCcccHHHHHHH-HhCCcEEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHH
Q psy15216 80 HFYKKRGKHIITVQTEHKSVLDSIRKL-ENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEI 158 (2602)
Q Consensus 80 ~~~~~~gd~Vlv~~~~~~s~~~~~~~~-~~~G~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I 158 (2602)
...+++||+|++++++|++....+..+ +..|++++.+++++++.+|+++++++++++|+++++++++|+||.++|+++|
T Consensus 102 ~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~i~~~~~lv~~~~~~~~tG~~~~~~~i 181 (403)
T TIGR01979 102 DSNLKAGDEIVISEMEHHANIVPWQLLAERTGATLKFIPLDDDGTLDLDDLEKLLTEKTKLVAITHVSNVLGTVNPVEEI 181 (403)
T ss_pred hhcCCCCCEEEECcchhhHHHHHHHHHHHhcCcEEEEEecCCCCCCCHHHHHHHhccCCeEEEEEcccccccccCCHHHH
Confidence 222478999999999999987666554 5679999999998888899999999999999999999999999999999999
Q ss_pred HHHHHhcCCEEEEecccccccccccCCCCCccEEEeccccccCCCCcEEEEEecCCCCcccceecCCCc-----------
Q psy15216 159 GELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGH----------- 227 (2602)
Q Consensus 159 ~~la~~~g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K~~Gp~G~G~l~~~~~~~~~l~~~~~g~~~----------- 227 (2602)
.++||+||+++++|++|+.|..++++..+++|++++|+||++||+|+|++++++++++.+.|...+|..
T Consensus 182 ~~~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~G~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 261 (403)
T TIGR01979 182 AKLAHQVGAKVLVDGAQAVPHMPVDVQALDCDFYVFSGHKMYGPTGIGVLYGKEELLEQMPPFLGGGEMIAEVSFEETTY 261 (403)
T ss_pred HHHHHHcCCEEEEEchhhcCccccCccccCCCEEEEecccccCCCCceEEEEchHHHhcCCCeecCCCceeecccCcccc
Confidence 999999999999999999999999998889999999999999999999999999888888776655432
Q ss_pred ---cccccccCcchhHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCC-CCCceEEEEEcccC
Q psy15216 228 ---EYGLRSGTLATHQIVGMGEAFRLARI-EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNN-RIPHNLNISFNFIE 302 (2602)
Q Consensus 228 ---~~~~~~gt~~~~~~~al~~al~~~~~-~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~-~~~~~~~~~~~~~~ 302 (2602)
..+++.||+++..++++.+++++..+ +.+++.+++.++++++++.|.+ +++++++.+... ..+.++.+.++..+
T Consensus 262 ~~~~~~~~~gt~~~~~~~al~~al~~~~~~g~~~~~~~~~~l~~~l~~~l~~-~~g~~~~~~~~~~~~~~~v~~~~~~~~ 340 (403)
T TIGR01979 262 NEAPHKFEAGTPNIAGVIGLGAAIDYLEAIGLENIEAHEHELTAYALERLGE-IPGLRIYGPRDAEDRGGIISFNVEGVH 340 (403)
T ss_pred CCChhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc-CCCEEEeCCCCccccCceEEEEeCCcC
Confidence 23466789999999999999996554 6889999999999999999987 789999876432 22456666676666
Q ss_pred hhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 303 GESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 303 ~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
..++...| +||.++.|.+|..+ .+..++.. +++|||+++|||++|+++++++|++
T Consensus 341 ~~~~~~~L~~~gI~v~~g~~~~~~------~~~~~~~~-----~~iRiS~~~~~t~~di~~l~~~l~~ 397 (403)
T TIGR01979 341 PHDVGTILDEEGIAVRSGHHCAQP------LMRRFGVP-----ATCRASFYIYNTEEDIDALVEALKK 397 (403)
T ss_pred HHHHHHHHhhCCEEEcchhhhhHH------HHHHhCCC-----CEEEEEeccCCCHHHHHHHHHHHHH
Confidence 67777666 79999999888642 33445533 7899999999999999999999985
|
This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. |
| >PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=381.87 Aligned_cols=349 Identities=30% Similarity=0.465 Sum_probs=303.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCC-CcEEEeCCHHHHHHHHHHhcc
Q psy15216 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADP-REIIWTSGATESNNLAIKGAA 79 (2602)
Q Consensus 1 Ld~a~~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~-~~Iv~t~g~T~al~~~~~~l~ 79 (2602)
||+++++++|+.|++++.+++...+.+|+++.+..+....+.++++|+.+++++|+++ ++|+|++|+|++++.++.++.
T Consensus 3 ld~~~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~lg~~~~~~v~~~~~~t~a~~~~~~~l~ 82 (371)
T PF00266_consen 3 LDNAGTGPMPKSVLEAISDYLRNFYANPHSGVSHRSREFAEILEEAREALAKLLGAPPDEEVVFTSNGTEALNAVASSLL 82 (371)
T ss_dssp EBTSSS-B-BHHHHHHHHHHHHHSGSSTSTSSSTTSHHHHHHHHHHHHHHHHHHTSSTTEEEEEESSHHHHHHHHHHHHH
T ss_pred eeCCCccCCCHHHHHHHHHHHHHhhhcCcccccchhhhhhHHHHHHHHHHHHhcCCccccccccccccchhhhhhhhccc
Confidence 7999999999999999999999989999777777788888999999999999999988 789999999999999999993
Q ss_pred cccccCCCEEEEcCCCCcccHHHHHHH-HhCCcEEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHH
Q psy15216 80 HFYKKRGKHIITVQTEHKSVLDSIRKL-ENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEI 158 (2602)
Q Consensus 80 ~~~~~~gd~Vlv~~~~~~s~~~~~~~~-~~~G~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I 158 (2602)
.. +++|++|++.+.+|++...+|..+ ++.|++++.++.+.++.+|++++++.++++|++|+++|++|.||.++|+++|
T Consensus 83 ~~-~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~v~~i~~~~~~~~~~~~~~~~l~~~~~lv~~~~~~~~tG~~~pi~~I 161 (371)
T PF00266_consen 83 NP-LKPGDEVLVTSNEHPSNRYPWEEIAKRKGAEVRVIPADPGGSLDLEDLEEALNPDTRLVSISHVENSTGVRNPIEEI 161 (371)
T ss_dssp HH-GTTTCEEEEEESSHHHHHHHHHHHHHHTTEEEEEEEEGTTSSCSHHHHHHHHHTTESEEEEESBETTTTBBSSHHHH
T ss_pred cc-cccccccccccccccccccccccccccchhhhccccccccchhhhhhhhhhhccccceEEeecccccccEEeeecee
Confidence 11 379999999999999999888877 4789999999998889999999999999999999999999999999999999
Q ss_pred HHHHHhcCCEEEEecccccccccccCCCCCccEEEeccccccCCCCcEEEEEecCCCCcccceecCCCc-----------
Q psy15216 159 GELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGH----------- 227 (2602)
Q Consensus 159 ~~la~~~g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K~~Gp~G~G~l~~~~~~~~~l~~~~~g~~~----------- 227 (2602)
.++||++|+++++|++|++|..++|+.++++|++++|+||++||+|+|+|+++++..++++|...+|..
T Consensus 162 ~~~~~~~~~~~~vD~~~~~g~~~id~~~~~~D~~~~s~~Kl~gp~G~g~l~v~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 241 (371)
T PF00266_consen 162 AKLAHEYGALLVVDAAQSAGCVPIDLDELGADFLVFSSHKLGGPPGLGFLYVRPEAIERLRPAKPGGGYLDFPSLQEYGL 241 (371)
T ss_dssp HHHHHHTTSEEEEE-TTTTTTSS--TTTTTESEEEEESTSTTSSSTEEEEEEEHHHHHHHHTSSSSSSTTTHHHHHHHCH
T ss_pred hhhhhccCCceeEechhccccccccccccccceeeecccccCCCCchhhheehhhhhhccccccccccccccccchhccc
Confidence 999999999999999999999999999999999999999988999999999999998888887777652
Q ss_pred ---cccccccCcchhHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCC-CCCCCCceEEEEEcccC
Q psy15216 228 ---EYGLRSGTLATHQIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIEEIYINGD-MNNRIPHNLNISFNFIE 302 (2602)
Q Consensus 228 ---~~~~~~gt~~~~~~~al~~al~~~-~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~-~~~~~~~~~~~~~~~~~ 302 (2602)
..+++.||+++..++++..++++. ..+++++.++..++.+++.+.|.+ ++++.++++ ...+.+.++.+.++..+
T Consensus 242 ~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~~~~~l~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~ 320 (371)
T PF00266_consen 242 ADDARRFEGGTPNVPAIYALNEALKLLEEIGIERIRERIRELAEYLREALEE-LPGIEVLGPDDEPRRPSIVSFNLPGSD 320 (371)
T ss_dssp HSTTTGSSSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTTEEESSSSCGGBGTTEEEEEETTSS
T ss_pred ccccccccccceeeehhhhHHHHHhhhhccccccchhhhhhHHHHHHhhhhc-CCceeEeeecccccccceEEEeecCCC
Confidence 245677899999999999999965 466899999999999999999998 899999874 44456777888888888
Q ss_pred hhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHH
Q psy15216 303 GESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFT 362 (2602)
Q Consensus 303 ~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~l 362 (2602)
...+...| ++|.++.|..|..+ .+..++.. +.||||+|+|||.+||++|
T Consensus 321 ~~~~~~~L~~~~I~~~~G~~~~~~------~~~~~~~~-----~~iRvS~~~~nt~~dv~~l 371 (371)
T PF00266_consen 321 ADDVVKYLEERGIAVSTGSACAGP------SLDILGMG-----GVIRVSLHYYNTEEDVDRL 371 (371)
T ss_dssp HHHHHHHHHHHTEEEEESTTTCHH------HHHHHHTT-----TEEEEE-GTTSSHHHHHHH
T ss_pred HHHHHHHHhhcCEEEeccCcccHH------HHHHhCCC-----CEEEEeccCCCCHHHHhhC
Confidence 88888877 69999999888732 33334443 8999999999999999986
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B .... |
| >PRK02948 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=373.02 Aligned_cols=373 Identities=36% Similarity=0.510 Sum_probs=312.7
Q ss_pred eeccC-CCCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhh
Q psy15216 1396 IVFKD-ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGA 1474 (2602)
Q Consensus 1396 v~L~~-~~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l 1474 (2602)
+|||+ +++++++.+++++.+++...+++|++ .|..+......++++|+.+++++|+++++|++++|+|++++.++.++
T Consensus 2 ~yld~a~~~~~~~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~r~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~ 80 (381)
T PRK02948 2 IYLDYAATTPMSKEALQTYQKAASQYFGNESS-LHDIGGTASSLLQVCRKTFAEMIGGEEQGIYFTSGGTESNYLAIQSL 80 (381)
T ss_pred EeccCCCCCCCCHHHHHHHHHHHHhcCCCCcc-ccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHHHHHH
Confidence 68875 44688899999999999877788875 56677778889999999999999998899999999999999998888
Q ss_pred hhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccCCceEEEEeccccccccccChHHH
Q psy15216 1475 AHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEI 1554 (2602)
Q Consensus 1475 ~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I 1554 (2602)
.....++|++|+++..+|+++..++..++..|++++.++.++++.+|+++|++++++++++|+++|++||||.++|+++|
T Consensus 81 ~~~~~~~g~~vv~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~lv~~~~~~n~tG~~~~~~~I 160 (381)
T PRK02948 81 LNALPQNKKHIITTPMEHASIHSYFQSLESQGYTVTEIPVDKSGLIRLVDLERAITPDTVLASIQHANSEIGTIQPIAEI 160 (381)
T ss_pred HHhccCCCCEEEECCcccHHHHHHHHHHHhCCCEEEEEeeCCCCCCCHHHHHHhcCCCCEEEEEECCcCCcEeehhHHHH
Confidence 63223678999999999999999988887789999999998888899999999999999999999999999999999999
Q ss_pred HHHhhhcCCEEEEecccccCcccccCCCCCccEEEEccccccCCCceEEEEEecCCCCccccccccCCccccCCCCCcch
Q psy15216 1555 GELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLAT 1634 (2602)
Q Consensus 1555 ~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K~~gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~ 1634 (2602)
.++|+++|+++++|++|++|..++++.++++|++++|+||++||+|+|+++++++. .+.+...++....++.+||++.
T Consensus 161 ~~l~~~~~~~vivD~~~~~g~~~~~~~~~~~d~~~~s~~K~~gp~G~G~l~~~~~~--~~~~~~~~~~~~~~~~~~t~~~ 238 (381)
T PRK02948 161 GALLKKYNVLFHSDCVQTFGKLPIDVFEMGIDSLSVSAHKIYGPKGVGAVYINPQV--RWKPVFPGTTHEKGFRPGTVNV 238 (381)
T ss_pred HHHHHHcCCEEEEEChhhccccccCcccCCCCEEEecHHhcCCCCcEEEEEEcCCC--CCCCcccCCCCCCCcCCCCccH
Confidence 99999999999999999999999999899999999999999999999999998764 2333333444456778899999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecCCcHHHHHhc--CCEEEc
Q psy15216 1635 HQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDIAVS 1712 (2602)
Q Consensus 1635 ~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~v~ 1712 (2602)
+.++++.++++.....+++.+++..++++++++.|.+....+...+......+.+..+.++..+..++...| +||.++
T Consensus 239 ~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~gI~v~ 318 (381)
T PRK02948 239 PGIAAFLTAAENILKNMQEESLRFKELRSYFLEQIQTLPLPIEVEGHSTSCLPHIIGVTIKGIEGQYTMLECNRRGIAIS 318 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEeCCCccCcCCEEEEEeCCCCHHHHHHhcccCCEEEE
Confidence 999999999997656788899999999999999998721123332222334455566666665666666666 899999
Q ss_pred cccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHhhhhhhhh
Q psy15216 1713 SGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKEFFMSYS 1772 (2602)
Q Consensus 1713 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~~~~~~y~ 1772 (2602)
.|.+|..+...|++++..++.+.+...+++|+|++++||++|+++++++|++. +..+|+
T Consensus 319 ~g~~c~~~~~~p~~~~~~~~~~~~~~~~~lRis~~~~~t~~di~~l~~~l~~~-~~~~~~ 377 (381)
T PRK02948 319 TGSACQVGKQEPSKTMLAIGKTYEEAKQFVRFSFGQQTTKDQIDTTIHALETI-GNQFYR 377 (381)
T ss_pred chHhcCCCCCCCCHHHHHcCCChHHhCceEEEEcCCCCCHHHHHHHHHHHHHH-HHHHhc
Confidence 99999887777888999998754444689999999999999999999999973 344453
|
|
| >TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=379.26 Aligned_cols=356 Identities=23% Similarity=0.327 Sum_probs=300.2
Q ss_pred eeeeccCCC-CCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCC-CCCcEEEeCCHHHHHHHHH
Q psy15216 1394 TNIVFKDAT-TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-DPREIIWTSGATESNNLAI 1471 (2602)
Q Consensus 1394 ~~v~L~~~~-~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~-~~~~iv~t~gaT~al~~al 1471 (2602)
..+|||++. ++.|..+++++.+++....++|+.+.|..+....+.++++|+.+++++|+ ++++|++|+|+|+++++++
T Consensus 16 ~~iyld~a~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i~~t~g~t~~l~~~~ 95 (398)
T TIGR03392 16 GTVYLDSAATALKPQAVIDATQQFYRLSSGTVHRSQHQQAQSLTARYELARQQVARFLNAPDAENIVWTRGTTESINLVA 95 (398)
T ss_pred CeEEeeCccccCCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCChHHHHHHHH
Confidence 578998644 68889999999999987778887766767777788899999999999999 4789999999999999999
Q ss_pred HhhhhhhccCCCEEEEcCCCCcchHHHHHH-HHhCCcEEEEeccCCCCCcChhHHHhhccCCceEEEEeccccccccccC
Q psy15216 1472 KGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP 1550 (2602)
Q Consensus 1472 ~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~-~~~~G~~v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~ 1550 (2602)
.++....+++||+|++++++|++....+.. ++..|++++.++.+.++.+|+++++++++++|++|+++|++||||.+.|
T Consensus 96 ~~~~~~~~~~gd~Vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~l~~~i~~~t~lv~i~~~~n~tG~~~~ 175 (398)
T TIGR03392 96 QSYARPRLQPGDEIIVSEAEHHANLIPWLMVAQQTGAKVVKLPIGADLLPDIRQLPELLTPRTRILALGQMSNVTGGCPD 175 (398)
T ss_pred HHhhhccCCCCCEEEECCcchhHHHHHHHHHHHHcCcEEEEEecCCCCCcCHHHHHHHhccCceEEEEECccccccccCC
Confidence 988421247999999999999997665544 4667999999999888889999999999999999999999999999999
Q ss_pred hHHHHHHhhhcCCEEEEecccccCcccccCCCCCccEEEEccccccCCCceEEEEEecCCCCccccccccCC--------
Q psy15216 1551 ILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGG-------- 1622 (2602)
Q Consensus 1551 l~~I~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K~~gp~G~G~l~~~~~~~~~l~~~~~g~~-------- 1622 (2602)
+++|.++|++||+++++|++|+.+..++++..+++|++++|+||++||+|+|++++++++++.+.+...++.
T Consensus 176 ~~~i~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~d~~~~s~~K~~gp~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (398)
T TIGR03392 176 LARAITLAHQYGAVVVVDGAQGVVHGPPDVQALDIDFYAFSGHKLYGPTGIGVLYGKTELLEAMPPWQGGGKMLSHVSFD 255 (398)
T ss_pred HHHHHHHHHHcCCEEEEEhhhhcCCCCCChhhcCCCEEEEecccccCCCceEEEEEcHHHHhhCCCeecCCceEeecccc
Confidence 999999999999999999999999988888888999999999999999999999999988877766543322
Q ss_pred ------ccccCCCCCcchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEe
Q psy15216 1623 ------HEYGLRSGTLATHQIVGMGEAFRLAR-IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN 1695 (2602)
Q Consensus 1623 ------~~~~~~~gt~~~~~~~al~~aL~~~~-~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~ 1695 (2602)
.+.+++.||++++.++++.+|++++. .+++++.++..++++++++.|.+ ++++.+..++. +.+..+.++
T Consensus 256 ~~~~~~~~~~~e~GT~~~~~~~a~~~al~~l~~~g~~~i~~~~~~l~~~l~~~l~~-l~g~~~~~~~~---~~i~~~~~~ 331 (398)
T TIGR03392 256 GFIPQAVPHRFEAGTPNIAGVIGLSAALEWLTDIDIAAAEAWSVSLADLAEERLAQ-LPGFRSFRCPG---SSLLAFDFA 331 (398)
T ss_pred ccccCCChhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc-CCCeEEeCCCC---CcEEEEEeC
Confidence 13567889999999999999999654 46788889999999999999987 78888775432 234555555
Q ss_pred cCCcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1696 FIEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1696 ~~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
+.+..++...| +||.+++|.+|..+ +...++.. ++||+|+++|||.+|+++++++|++
T Consensus 332 ~~~~~~l~~~L~~~gI~v~~g~~~~~~------~~~~~g~~-----~~iRvS~~~~~t~~ei~~l~~~l~~ 391 (398)
T TIGR03392 332 GVHHSDLAALLAESGIALRAGQHCAQP------LMAALGVS-----GTLRASFAPYNTQQDVDALVDAVGA 391 (398)
T ss_pred CcCHHHHHHHHHhCCEEEecCccchHH------HHHHhCCC-----CEEEEEeeccCCHHHHHHHHHHHHH
Confidence 55566777666 89999999988642 33445543 7999999999999999999999986
|
Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems. |
| >TIGR03235 DNA_S_dndA cysteine desulfurase DndA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=373.31 Aligned_cols=348 Identities=49% Similarity=0.767 Sum_probs=307.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhccc
Q psy15216 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAH 80 (2602)
Q Consensus 1 Ld~a~~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~ 80 (2602)
||+++++|+|+.+++++.+++...+++|+...+..+......++++|+++++++|+++++|++++|+|++++.++.++..
T Consensus 2 ld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~~~g~t~a~~~~l~~l~~ 81 (353)
T TIGR03235 2 LDHNATTPIDPAVAEAMLPWLLEEFGNPSSRTHEFGHNAKKAVERARKQVAEALGADTEEVIFTSGATESNNLAILGLAR 81 (353)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHH
Confidence 79999999999999999999876677877534445555667889999999999999989999999999999999988752
Q ss_pred ccccCC-CEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHH
Q psy15216 81 FYKKRG-KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIG 159 (2602)
Q Consensus 81 ~~~~~g-d~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~ 159 (2602)
....+| ++|+++..+|+++..++..++..|++++.++.++++.+|++++++++++++++|++++++||||.++|+++|.
T Consensus 82 ~~~~~g~~~vi~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~l~~~l~~~~~lv~~~~~~n~tG~~~~~~~I~ 161 (353)
T TIGR03235 82 AGEQKGKKHIITSAIEHPAVLEPIRALERNGFTVTYLPVDESGRIDVDELADAIRPDTLLVSIMHVNNETGSIQPIREIA 161 (353)
T ss_pred hcccCCCCeeeEcccccHHHHHHHHHHHhcCCEEEEEccCCCCcCCHHHHHHhCCCCCEEEEEEcccCCceeccCHHHHH
Confidence 212356 8999999999999999988877899999999988888999999999999999999999999999999999999
Q ss_pred HHHHhcCCEEEEecccccccccccCCCCCccEEEeccccccCCCCcEEEEEecCCCC--cccceecCCCccccccccCcc
Q psy15216 160 ELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRT--RIEAQIHGGGHEYGLRSGTLA 237 (2602)
Q Consensus 160 ~la~~~g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K~~Gp~G~G~l~~~~~~~~--~l~~~~~g~~~~~~~~~gt~~ 237 (2602)
++|+++|+++++|++|++|..++++..+++|++++|+||++||+|+|+++++++... .+.|.+.+++..++++.||++
T Consensus 162 ~l~~~~~~~~ivD~a~~~g~~~~~~~~~~~D~~~~s~~K~~gp~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~ 241 (353)
T TIGR03235 162 EVLEAHEAFFHVDAAQVVGKITVDLSADRIDLISCSGHKIYGPKGIGALVIRKRGKPKAPLKPIMFGGGQERGLRPGTLP 241 (353)
T ss_pred HHHHHcCCEEEEEchhhcCCccccccccCCCEEEeehhhcCCCCceEEEEEccCcccccccCceeeCCCCcCccccCCCC
Confidence 999999999999999999999999999999999999999999999999999988643 366777776667788899999
Q ss_pred hhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcccChhHHHHHh-CCeEEc
Q psy15216 238 THQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI-KDIAVS 316 (2602)
Q Consensus 238 ~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L-~gI~v~ 316 (2602)
+..++++.+++++...+.+++.++++++++++++.|.+ +|++++.++..+.+.++.+.+++.+..++...| ++|.++
T Consensus 242 ~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~--~g~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~L~~~i~v~ 319 (353)
T TIGR03235 242 VHLIVGMGEAAEIARRNAQAWEVKLRAMRNQLRDALQT--LGVKLNGDPAETIPHILNFSIDGVNSEALIVNLRADAAVS 319 (353)
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc--CCeEEeCCcccccCCEEEEEeCCcCHHHHHHHHhCCeEEE
Confidence 99999999999977777889999999999999999977 799988765555566777777877778888887 689999
Q ss_pred ccccCCCCCCChHHHHHHcCCCccCCCCeEEEec
Q psy15216 317 SGSACTSASLEPSYVLRALGCNDELAHSSIRFTI 350 (2602)
Q Consensus 317 ~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~ 350 (2602)
+|.+|.++...+++++..+|.+++...+.+|+|+
T Consensus 320 ~g~~~~~~~~~~~~~l~~~g~~~~~~~~~~r~s~ 353 (353)
T TIGR03235 320 TGSACSSSKYEPSHVLQAMGLDTDRARGAIRFSW 353 (353)
T ss_pred chhhcCCCCCCCCHHHHHcCCCHHHhCccEEEeC
Confidence 9999998888889999999999888889999996
|
This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase. |
| >PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-34 Score=369.63 Aligned_cols=350 Identities=30% Similarity=0.461 Sum_probs=300.6
Q ss_pred eecc-CCCCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCC-CcEEEeCCHHHHHHHHHHh
Q psy15216 1396 IVFK-DATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADP-REIIWTSGATESNNLAIKG 1473 (2602)
Q Consensus 1396 v~L~-~~~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~-~~iv~t~gaT~al~~al~~ 1473 (2602)
+||+ +++++.|+.+++++.+++...++||+++.+..+..+.+.++++|+.+++++|+++ ++|+|++|+|++++.++.+
T Consensus 1 iYld~~~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~lg~~~~~~v~~~~~~t~a~~~~~~~ 80 (371)
T PF00266_consen 1 IYLDNAGTGPMPKSVLEAISDYLRNFYANPHSGVSHRSREFAEILEEAREALAKLLGAPPDEEVVFTSNGTEALNAVASS 80 (371)
T ss_dssp EEEBTSSS-B-BHHHHHHHHHHHHHSGSSTSTSSSTTSHHHHHHHHHHHHHHHHHHTSSTTEEEEEESSHHHHHHHHHHH
T ss_pred CEeeCCCccCCCHHHHHHHHHHHHHhhhcCcccccchhhhhhHHHHHHHHHHHHhcCCccccccccccccchhhhhhhhc
Confidence 5776 4557899999999999999989999777788888889999999999999999988 8899999999999999999
Q ss_pred hhhhhccCCCEEEEcCCCCcchHHHHHHHH-hCCcEEEEeccCCCCCcChhHHHhhccCCceEEEEeccccccccccChH
Q psy15216 1474 AAHFYKKRGKHIITVQTEHKSVLDSIRKLE-NDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPIL 1552 (2602)
Q Consensus 1474 l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~-~~G~~v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~ 1552 (2602)
+... +++|++|++.+.+|++...+|..+. +.|+++++++.+.++.+|+++++++|+++|++|+++|++|.||.++|++
T Consensus 81 l~~~-~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~v~~i~~~~~~~~~~~~~~~~l~~~~~lv~~~~~~~~tG~~~pi~ 159 (371)
T PF00266_consen 81 LLNP-LKPGDEVLVTSNEHPSNRYPWEEIAKRKGAEVRVIPADPGGSLDLEDLEEALNPDTRLVSISHVENSTGVRNPIE 159 (371)
T ss_dssp HHHH-GTTTCEEEEEESSHHHHHHHHHHHHHHTTEEEEEEEEGTTSSCSHHHHHHHHHTTESEEEEESBETTTTBBSSHH
T ss_pred cccc-cccccccccccccccccccccccccccchhhhccccccccchhhhhhhhhhhccccceEEeecccccccEEeeec
Confidence 9421 4899999999999999998887774 7799999999988889999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCEEEEecccccCcccccCCCCCccEEEEccccccCCCceEEEEEecCCCCccccccccCCc---------
Q psy15216 1553 EIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGH--------- 1623 (2602)
Q Consensus 1553 ~I~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K~~gp~G~G~l~~~~~~~~~l~~~~~g~~~--------- 1623 (2602)
+|.++||++|+++++|++|++|..++++.++++|++++|+||++||+|+|+++++++..+++.|...+|..
T Consensus 160 ~I~~~~~~~~~~~~vD~~~~~g~~~id~~~~~~D~~~~s~~Kl~gp~G~g~l~v~~~~~~~~~p~~~~~~~~~~~~~~~~ 239 (371)
T PF00266_consen 160 EIAKLAHEYGALLVVDAAQSAGCVPIDLDELGADFLVFSSHKLGGPPGLGFLYVRPEAIERLRPAKPGGGYLDFPSLQEY 239 (371)
T ss_dssp HHHHHHHHTTSEEEEE-TTTTTTSS--TTTTTESEEEEESTSTTSSSTEEEEEEEHHHHHHHHTSSSSSSTTTHHHHHHH
T ss_pred eehhhhhccCCceeEechhccccccccccccccceeeecccccCCCCchhhheehhhhhhccccccccccccccccchhc
Confidence 99999999999999999999999999999999999999999988999999999999888888777766652
Q ss_pred -----cccCCCCCcchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCC-CCCCCCceEEEEEec
Q psy15216 1624 -----EYGLRSGTLATHQIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIEEIYINGD-MNNRIPHNLNISFNF 1696 (2602)
Q Consensus 1624 -----~~~~~~gt~~~~~~~al~~aL~~~-~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~-~~~~~~~~~~~~~~~ 1696 (2602)
..+++.||+++..++++..++++. ..+++++.++..++.+++.+.|.+ ++++.+.++ .....+.++.+.++.
T Consensus 240 ~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~~~~~l~~-~~~~~~~~~~~~~~~~~i~~~~~~~ 318 (371)
T PF00266_consen 240 GLADDARRFEGGTPNVPAIYALNEALKLLEEIGIERIRERIRELAEYLREALEE-LPGIEVLGPDDEPRRPSIVSFNLPG 318 (371)
T ss_dssp CHHSTTTGSSSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTTEEESSSSCGGBGTTEEEEEETT
T ss_pred ccccccccccccceeeehhhhHHHHHhhhhccccccchhhhhhHHHHHHhhhhc-CCceeEeeecccccccceEEEeecC
Confidence 345778999999999999999965 567899999999999999999998 899999774 344567788888887
Q ss_pred CCcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHH
Q psy15216 1697 IEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFT 1758 (2602)
Q Consensus 1697 ~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~l 1758 (2602)
.+...+...| ++|.++.|..|..+ ....++.. +.||+|+++|||.+|||+|
T Consensus 319 ~~~~~~~~~L~~~~I~~~~G~~~~~~------~~~~~~~~-----~~iRvS~~~~nt~~dv~~l 371 (371)
T PF00266_consen 319 SDADDVVKYLEERGIAVSTGSACAGP------SLDILGMG-----GVIRVSLHYYNTEEDVDRL 371 (371)
T ss_dssp SSHHHHHHHHHHHTEEEEESTTTCHH------HHHHHHTT-----TEEEEE-GTTSSHHHHHHH
T ss_pred CCHHHHHHHHhhcCEEEeccCcccHH------HHHHhCCC-----CEEEEeccCCCCHHHHhhC
Confidence 7888877777 69999998888632 22223333 8899999999999999986
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B .... |
| >TIGR01979 sufS cysteine desulfurases, SufS subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=366.83 Aligned_cols=358 Identities=26% Similarity=0.395 Sum_probs=299.9
Q ss_pred eeeccCCC-CCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCC-CCcEEEeCCHHHHHHHHHH
Q psy15216 1395 NIVFKDAT-TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYAD-PREIIWTSGATESNNLAIK 1472 (2602)
Q Consensus 1395 ~v~L~~~~-~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~-~~~iv~t~gaT~al~~al~ 1472 (2602)
.+|||.+. .+.|..+.+++.+++...+++|+.+.+..+......++++|+.+++++|++ +++|++|+|+|+++++++.
T Consensus 19 ~~yld~~~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~~~~~~~~v~~~~g~t~~l~~~~~ 98 (403)
T TIGR01979 19 LVYLDSAATSQKPQQVIDAVAEYYRNSNANVHRGIHTLSVRATEAYEAVREKVAKFINAASDEEIVFTRGTTESINLVAY 98 (403)
T ss_pred eEEEeCccccCCCHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHH
Confidence 47888555 577899999999998887788887666666677788999999999999997 6799999999999999998
Q ss_pred hhhhhhccCCCEEEEcCCCCcchHHHHHHH-HhCCcEEEEeccCCCCCcChhHHHhhccCCceEEEEeccccccccccCh
Q psy15216 1473 GAAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPI 1551 (2602)
Q Consensus 1473 ~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~-~~~G~~v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l 1551 (2602)
++....+++||+|++++++|++....+..+ ...|++++.++++.++.+|+++++++++++|++|++++++|+||.++|+
T Consensus 99 ~~~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~i~~~~~lv~~~~~~~~tG~~~~~ 178 (403)
T TIGR01979 99 SWGDSNLKAGDEIVISEMEHHANIVPWQLLAERTGATLKFIPLDDDGTLDLDDLEKLLTEKTKLVAITHVSNVLGTVNPV 178 (403)
T ss_pred HhhhhcCCCCCEEEECcchhhHHHHHHHHHHHhcCcEEEEEecCCCCCCCHHHHHHHhccCCeEEEEEcccccccccCCH
Confidence 864222478999999999999977666554 4569999999998888899999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCEEEEecccccCcccccCCCCCccEEEEccccccCCCceEEEEEecCCCCccccccccCCc--------
Q psy15216 1552 LEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGH-------- 1623 (2602)
Q Consensus 1552 ~~I~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K~~gp~G~G~l~~~~~~~~~l~~~~~g~~~-------- 1623 (2602)
++|.++|++||+++++|++|++|..++++.++++|++++|+||++||.|+|++++++++++.+.+...||..
T Consensus 179 ~~i~~~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~G~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~ 258 (403)
T TIGR01979 179 EEIAKLAHQVGAKVLVDGAQAVPHMPVDVQALDCDFYVFSGHKMYGPTGIGVLYGKEELLEQMPPFLGGGEMIAEVSFEE 258 (403)
T ss_pred HHHHHHHHHcCCEEEEEchhhcCccccCccccCCCEEEEecccccCCCCceEEEEchHHHhcCCCeecCCCceeecccCc
Confidence 999999999999999999999999999998889999999999999999999999998887777765544422
Q ss_pred ------cccCCCCCcchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCC-CCCceEEEEEe
Q psy15216 1624 ------EYGLRSGTLATHQIVGMGEAFRLARI-EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNN-RIPHNLNISFN 1695 (2602)
Q Consensus 1624 ------~~~~~~gt~~~~~~~al~~aL~~~~~-~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~-~~~~~~~~~~~ 1695 (2602)
+.+++.||+++..++++.+++++... +++.+.++..++++++++.|.+ ++++.+.++... ..+.+..|.++
T Consensus 259 ~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~~g~~~~~~~~~~l~~~l~~~l~~-~~g~~~~~~~~~~~~~~~v~~~~~ 337 (403)
T TIGR01979 259 TTYNEAPHKFEAGTPNIAGVIGLGAAIDYLEAIGLENIEAHEHELTAYALERLGE-IPGLRIYGPRDAEDRGGIISFNVE 337 (403)
T ss_pred cccCCChhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc-CCCEEEeCCCCccccCceEEEEeC
Confidence 23567789999999999999996554 6888999999999999999987 789998865432 23456666666
Q ss_pred cCCcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1696 FIEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1696 ~~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
..+..++...| +||.++.|.+|..+ ....++.. +++|+|+++|||.+|+++++++|++
T Consensus 338 ~~~~~~~~~~L~~~gI~v~~g~~~~~~------~~~~~~~~-----~~iRiS~~~~~t~~di~~l~~~l~~ 397 (403)
T TIGR01979 338 GVHPHDVGTILDEEGIAVRSGHHCAQP------LMRRFGVP-----ATCRASFYIYNTEEDIDALVEALKK 397 (403)
T ss_pred CcCHHHHHHHHhhCCEEEcchhhhhHH------HHHHhCCC-----CEEEEEeccCCCHHHHHHHHHHHHH
Confidence 65566676666 79999988877542 23334432 7899999999999999999999986
|
This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. |
| >PRK13928 rod shape-determining protein Mbl; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=355.63 Aligned_cols=307 Identities=23% Similarity=0.320 Sum_probs=243.6
Q ss_pred EEEEcCcccEEEEEEECCeeEEEeCCCCCccccEEEEEecCC-c-EEEcHHHHhhhccCCCCchhhhhhhhCCCCCCCCC
Q psy15216 640 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDG-K-IYVGKKAKITQNIDPKNTISSIKRFIARDLKNINT 717 (2602)
Q Consensus 640 vGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~v~~~~~~-~-~~vG~~A~~~~~~~p~~~~~~~K~~lg~~~~~~~~ 717 (2602)
+||||||+||+++.. ++..++. .||+|+|..++ . +.+|..|+....+.|.+.... +
T Consensus 6 ~gIDlGt~~~~i~~~--~~~~v~~-------~psvv~~~~~~~~i~~vG~~A~~~~~~~p~~~~~~--~----------- 63 (336)
T PRK13928 6 IGIDLGTANVLVYVK--GKGIVLN-------EPSVVAIDKNTNKVLAVGEEARRMVGRTPGNIVAI--R----------- 63 (336)
T ss_pred eEEEcccccEEEEEC--CCCEEEc-------cCCEEEEECCCCeEEEecHHHHHhhhcCCCCEEEE--c-----------
Confidence 899999999999876 5445554 59999998542 3 478999988877766665421 1
Q ss_pred CCCCeeeecCCCceEEEEeCceeCHHHHHHHHHHHHHHHHHHhhcCccceEEEEEcCCCCHHHHHHHHHHHHHcCCceEE
Q psy15216 718 NSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLR 797 (2602)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~~~~Aa~~AGl~~~~ 797 (2602)
|+ ..+.+...++...+++++.+.+..........+|||||++|++.||+++++|++.||++++.
T Consensus 64 ---pi-------------~~G~i~d~~~~~~~l~~~~~~~~~~~~~~~p~~vitvP~~~~~~~r~~~~~a~~~ag~~~~~ 127 (336)
T PRK13928 64 ---PL-------------RDGVIADYDVTEKMLKYFINKACGKRFFSKPRIMICIPTGITSVEKRAVREAAEQAGAKKVY 127 (336)
T ss_pred ---cC-------------CCCeEecHHHHHHHHHHHHHHHhccCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCceE
Confidence 11 11334556777888888876554332223347999999999999999999999999999999
Q ss_pred EechhHHHHHHhhhccCcccceEEEEEeCCceEEEEEEEEECCEEEEEEEecCCCCcchHHHHHHHHHHHHHHhhccCCH
Q psy15216 798 LLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLSY 877 (2602)
Q Consensus 798 li~EPtAAAl~y~~~~~~~~~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~~~~~ 877 (2602)
+++||+|||++|+.+.. .+..++|||+||||||+++++... ++ ..++.++||++||+.|.+++.+++.....
T Consensus 128 li~ep~Aaa~~~g~~~~-~~~~~lVvDiGggttdvsvv~~g~----~~-~~~~~~lGG~did~~i~~~l~~~~~~~~~-- 199 (336)
T PRK13928 128 LIEEPLAAAIGAGLDIS-QPSGNMVVDIGGGTTDIAVLSLGG----IV-TSSSIKVAGDKFDEAIIRYIRKKYKLLIG-- 199 (336)
T ss_pred ecccHHHHHHHcCCccc-CCCeEEEEEeCCCeEEEEEEEeCC----EE-EeCCcCCHHHHHHHHHHHHHHHHhchhcC--
Confidence 99999999999988654 456789999999999999998753 22 34578999999999999999987643211
Q ss_pred HHHHHHHHHHHHHHHHccccc----ceEEEEE---ecCCceEEEEeCHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCcc
Q psy15216 878 KDVNILMIKSREIKELLSYQS----SVKLNVK---LSDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDAN--LTIK 948 (2602)
Q Consensus 878 ~~~~~l~~~~e~~K~~LS~~~----~~~~~i~---~~~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~a~--~~~~ 948 (2602)
...+|++|+.++... ...+.+. +..+....++|+|++|++++.+.++++.+.+++.|+.++ +..+
T Consensus 200 ------~~~ae~lK~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~i~~~~~~eii~~~~~~i~~~i~~~l~~~~~~~~~~ 273 (336)
T PRK13928 200 ------ERTAEEIKIKIGTAFPGAREEEMEIRGRDLVTGLPKTITVTSEEIREALKEPVSAIVQAVKSVLERTPPELSAD 273 (336)
T ss_pred ------HHHHHHHHHHhcccccccCCcEEEEecccccCCCceEEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCccccHh
Confidence 257999999987542 1233332 233456678999999999999999999999999999986 4456
Q ss_pred ccc-eEEEecCccchHHHHHHHHhhccCcccCcCCcchHhHHHHHHHhHHh
Q psy15216 949 DIN-NVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFL 998 (2602)
Q Consensus 949 ~i~-~V~LvGG~sr~P~v~~~l~~~f~~~~~~~~~p~~aVa~GAa~~a~~l 998 (2602)
.++ .|+|+||+|++|.|++++++.|+.++....||++|||+|||+++..+
T Consensus 274 ~i~~~IvL~GG~s~ipgi~e~l~~~~~~~v~~~~~P~~ava~Gaa~~~~~~ 324 (336)
T PRK13928 274 IIDRGIIMTGGGALLHGLDKLLAEETKVPVYIAEDPISCVALGTGKMLENI 324 (336)
T ss_pred hcCCCEEEECcccchhhHHHHHHHHHCCCceecCCHHHHHHHHHHHHHhch
Confidence 677 79999999999999999999999998888999999999999998664
|
|
| >PLN02724 Molybdenum cofactor sulfurase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=391.43 Aligned_cols=359 Identities=20% Similarity=0.291 Sum_probs=287.4
Q ss_pred CCCCCCCCCCH-HHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCC--cEEEeCCHHHHHHHHHHh
Q psy15216 1 MDYSATTPIDP-RVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPR--EIIWTSGATESNNLAIKG 77 (2602)
Q Consensus 1 Ld~a~~~~~p~-~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~--~Iv~t~g~T~al~~~~~~ 77 (2602)
|||++++++++ .+.+++.+++...++||++ .+..+......++++|+.+|+++|++++ +|+||+|+|+|+++++.+
T Consensus 38 LD~Aatt~~~~~~V~~~~~~~~~~~~~np~s-~~~~s~~~~~~~e~aR~~ia~~lga~~~~~~VvFtsnaT~alnlva~~ 116 (805)
T PLN02724 38 LDHAGATLYSESQLEAALADFSSNVYGNPHS-QSDSSMRSSDTIESARQQVLEYFNAPPSDYACVFTSGATAALKLVGET 116 (805)
T ss_pred EeCCCCCCCCHHHHHHHHHHHHhhccCCCCc-CcchhhhHHHHHHHHHHHHHHHhCCCccceEEEEeCChHHHHHHHHHH
Confidence 79999998765 5555566677777889996 5666777788999999999999999765 489999999999999999
Q ss_pred cccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccC--------CCCccCh--HHHHhhc----------cCCc
Q psy15216 78 AAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK--------NNGLITL--SQLEEKI----------CSDT 137 (2602)
Q Consensus 78 l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~--------~~~~ld~--e~l~~~i----------~~~t 137 (2602)
+. +++||+|+++..+|+++..++..+++.|+++++++++ ..+.+++ ++|++.+ .++|
T Consensus 117 l~---~~~gd~Iv~t~~eH~svl~~~~~a~~~G~~v~~v~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~l~~~~~~~~~t 193 (805)
T PLN02724 117 FP---WSSESHFCYTLENHNSVLGIREYALEKGAAAIAVDIEEAANQPTNSQGSVVVKSRGLQRRNTSKLQKREDDGEAY 193 (805)
T ss_pred CC---CCCCCeEEEeeccccchHHHHHHHHHcCCeEEeccchhccccccccccccccchhhhhhhhhhhhccccccCCCc
Confidence 86 6899999999999999998777777889999999876 3344444 6677654 2567
Q ss_pred eEEEEecccCcccccccHHHHHHHHHhc--------CCEEEEecccccccccccCCCCCccEEEeccccccC-CCCcEEE
Q psy15216 138 ILVSVMLVNNEIGVIQPILEIGELCRSK--------GVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYG-PKGIGAL 208 (2602)
Q Consensus 138 klv~i~~~~npTG~~~~l~~I~~la~~~--------g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K~~G-p~G~G~l 208 (2602)
++|+++|.+|.||.++|+++|..+++.. ++++++|++|++|+.++|+.++++||+++|+||++| |.|+|+|
T Consensus 194 ~LVa~~~vsN~tG~i~pi~~i~~~~~~~~~~~~~~g~~~v~vDaaQ~~g~~piDv~~~~~Dfl~~S~HK~~GgP~G~G~L 273 (805)
T PLN02724 194 NLFAFPSECNFSGAKFPLDLVKLIKDNQHSNFSKSGRWMVLLDAAKGCGTSPPDLSRYPADFVVVSFYKIFGYPTGLGAL 273 (805)
T ss_pred ceEEEEccccCCCCcCCHHHHHHHHHhcccccccCcceEEEeehhhhcCCCCCChhhcCCCEEEEecceeccCCCCceEE
Confidence 8999999999999999999875555432 368999999999999999999999999999999887 9999999
Q ss_pred EEecCCCCcccceecCCCc-----------------cccccccCcchhHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHH
Q psy15216 209 YIRRNPRTRIEAQIHGGGH-----------------EYGLRSGTLATHQIVGMGEAFRLARI-EMKEELKRILFLQKRLY 270 (2602)
Q Consensus 209 ~~~~~~~~~l~~~~~g~~~-----------------~~~~~~gt~~~~~~~al~~al~~~~~-~~~~~~~~~~~l~~~l~ 270 (2602)
|+++++.+.+.|.+.||++ +.+|+.||+|+++++++.+|+++... +++++.++...++++++
T Consensus 274 ~vr~~~~~~l~p~~~GGg~~~~~~~~~~~~~~~~~~~~rfE~GT~n~~~i~~l~aal~~l~~ig~~~I~~~~~~L~~~l~ 353 (805)
T PLN02724 274 LVRRDAAKLLKKKYFGGGTVAASIADIDFVKRRERVEQRFEDGTISFLSIAALRHGFKLLNRLTISAIAMHTWALTHYVA 353 (805)
T ss_pred EEehhhhhhhcCCccCCCceEEEecccceeeccccHHHHhcCCCcchhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 9999988888888877743 35688999999999999999997665 68999999999999999
Q ss_pred HHHhhccC------ceEEeCCCC-----CCCCceEEEEEcccChhHH----HHH---hCCeEEcccccCCCCCCChHHHH
Q psy15216 271 NGLMESIE------EIYINGDMN-----NRIPHNLNISFNFIEGESL----LMA---IKDIAVSSGSACTSASLEPSYVL 332 (2602)
Q Consensus 271 ~~L~~~~~------g~~l~~~~~-----~~~~~~~~~~~~~~~~~~~----~~~---L~gI~v~~g~~~~~~~~~~~~~~ 332 (2602)
+.|++ ++ +++++++.. .....++.|.+...++..+ +.. .++|.+|.|++|.++. ..
T Consensus 354 ~~L~~-l~~~~g~~~v~iyg~~~~~~~~~~r~~ivsFnv~~~~~~~v~~~~v~~l~~~~gI~vR~G~~Ca~~~-----~~ 427 (805)
T PLN02724 354 NSLRN-LKHGNGAPVCVLYGNHTFKLEFHIQGPIVTFNLKRADGSWVGHREVEKLASLSGIQLRTGCFCNPGA-----CA 427 (805)
T ss_pred HHHHh-ccCCCCCeEEEEcCCCCCCCCcccccCEEEEEEEcCCCCEeCHHHHHHHHHhcCcEEeeccccCchH-----HH
Confidence 99987 54 688987641 1122344444544443211 222 2799999999999862 11
Q ss_pred HHcCCCc---------------------cCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 333 RALGCND---------------------ELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 333 ~~~g~~~---------------------~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
..+|++. ....+++|+|+++|||.+||++|+++|++.
T Consensus 428 ~~lg~~~~~l~~~~~~~~~c~~~~~~~~~~~~G~vRvS~g~ynt~eDvd~lv~~l~~~ 485 (805)
T PLN02724 428 KYLGLSHKDLQANFEAGHVCWDDQDVIHGRPTGAVRVSFGYMSTFEDCQKFIDFIISS 485 (805)
T ss_pred HHcCCCHHHHHHHhhcCCccCchhheecCcccceEEEEcCccCCHHHHHHHHHHHHHH
Confidence 2333321 112389999999999999999999999963
|
|
| >TIGR03235 DNA_S_dndA cysteine desulfurase DndA | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-33 Score=357.64 Aligned_cols=348 Identities=48% Similarity=0.763 Sum_probs=303.0
Q ss_pred eccC-CCCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhh
Q psy15216 1397 VFKD-ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAA 1475 (2602)
Q Consensus 1397 ~L~~-~~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~ 1475 (2602)
|||+ +.+++++.+++++.+++...+++|+...+..+......++++|+.+++++|+++++|+||+|+|++++.++.++.
T Consensus 1 yld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~~~g~t~a~~~~l~~l~ 80 (353)
T TIGR03235 1 YLDHNATTPIDPAVAEAMLPWLLEEFGNPSSRTHEFGHNAKKAVERARKQVAEALGADTEEVIFTSGATESNNLAILGLA 80 (353)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHH
Confidence 4654 446888999999999987767788764455566667788999999999999998899999999999999998875
Q ss_pred hhhccCC-CEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccCCceEEEEeccccccccccChHHH
Q psy15216 1476 HFYKKRG-KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEI 1554 (2602)
Q Consensus 1476 ~~~~~~g-d~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I 1554 (2602)
....++| ++|+++..+|+++..++..++..|++++.++.++++.+|+++++++++++|++|+++|++||||.+.|+++|
T Consensus 81 ~~~~~~g~~~vi~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~l~~~l~~~~~lv~~~~~~n~tG~~~~~~~I 160 (353)
T TIGR03235 81 RAGEQKGKKHIITSAIEHPAVLEPIRALERNGFTVTYLPVDESGRIDVDELADAIRPDTLLVSIMHVNNETGSIQPIREI 160 (353)
T ss_pred HhcccCCCCeeeEcccccHHHHHHHHHHHhcCCEEEEEccCCCCcCCHHHHHHhCCCCCEEEEEEcccCCceeccCHHHH
Confidence 2222356 899999999999999988887779999999998888899999999999999999999999999999999999
Q ss_pred HHHhhhcCCEEEEecccccCcccccCCCCCccEEEEccccccCCCceEEEEEecCCCC--ccccccccCCccccCCCCCc
Q psy15216 1555 GELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRT--RIEAQIHGGGHEYGLRSGTL 1632 (2602)
Q Consensus 1555 ~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K~~gp~G~G~l~~~~~~~~--~l~~~~~g~~~~~~~~~gt~ 1632 (2602)
.++|++||+++++|++|++|..++++.++++|++++|+||++||+|+|+++++++... .+.|.+.+++...+++.||+
T Consensus 161 ~~l~~~~~~~~ivD~a~~~g~~~~~~~~~~~D~~~~s~~K~~gp~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~ 240 (353)
T TIGR03235 161 AEVLEAHEAFFHVDAAQVVGKITVDLSADRIDLISCSGHKIYGPKGIGALVIRKRGKPKAPLKPIMFGGGQERGLRPGTL 240 (353)
T ss_pred HHHHHHcCCEEEEEchhhcCCccccccccCCCEEEeehhhcCCCCceEEEEEccCcccccccCceeeCCCCcCccccCCC
Confidence 9999999999999999999999999999999999999999999999999999987543 36676777666778889999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecCCcHHHHHhc-CCEEE
Q psy15216 1633 ATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI-KDIAV 1711 (2602)
Q Consensus 1633 ~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~L-~gI~v 1711 (2602)
+++.++++.+++++...+.+++.++++++++++++.|.+ +|+.+..++....+.++.+.+++.+..++...| .+|.+
T Consensus 241 ~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~--~g~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~L~~~i~v 318 (353)
T TIGR03235 241 PVHLIVGMGEAAEIARRNAQAWEVKLRAMRNQLRDALQT--LGVKLNGDPAETIPHILNFSIDGVNSEALIVNLRADAAV 318 (353)
T ss_pred ChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc--CCeEEeCCcccccCCEEEEEeCCcCHHHHHHHHhCCeEE
Confidence 999999999999977778889999999999999999977 799888665555667777777777777787777 68999
Q ss_pred ccccccCCCCCChhHHHHHcCCCccccCCeEEEec
Q psy15216 1712 SSGSACTSASLEPSYVLRALGCNDELAHSSIRFTI 1746 (2602)
Q Consensus 1712 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~ 1746 (2602)
++|.+|......+++++..+|.+++...+.||+|+
T Consensus 319 ~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~~r~s~ 353 (353)
T TIGR03235 319 STGSACSSSKYEPSHVLQAMGLDTDRARGAIRFSW 353 (353)
T ss_pred EchhhcCCCCCCCCHHHHHcCCCHHHhCccEEEeC
Confidence 99999988766778999999999877889999996
|
This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase. |
| >PRK13929 rod-share determining protein MreBH; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-33 Score=350.06 Aligned_cols=305 Identities=23% Similarity=0.327 Sum_probs=247.6
Q ss_pred EEEEEcCcccEEEEEEECCeeEEEeCCCCCccccEEEEEecCCc--EEEcHHHHhhhccCCCCchhhhhhhhCCCCCCCC
Q psy15216 639 SIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGK--IYVGKKAKITQNIDPKNTISSIKRFIARDLKNIN 716 (2602)
Q Consensus 639 vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~v~~~~~~~--~~vG~~A~~~~~~~p~~~~~~~K~~lg~~~~~~~ 716 (2602)
.+||||||||+++ +.+++.. +.| .||+|+|+.++. +.||.+|+.+..++|.++... +-+.
T Consensus 6 ~~giDlGt~~~~i--~~~~~~~-~~~------~ps~va~~~~~~~~~~vG~~A~~~~~~~p~~~~~~--~pi~------- 67 (335)
T PRK13929 6 EIGIDLGTANILV--YSKNKGI-ILN------EPSVVAVDTETKAVLAIGTEAKNMIGKTPGKIVAV--RPMK------- 67 (335)
T ss_pred eEEEEcccccEEE--EECCCcE-Eec------CCcEEEEECCCCeEEEeCHHHHHhhhcCCCcEEEE--ecCC-------
Confidence 3899999999985 5666654 444 499999986543 689999999998989877542 2110
Q ss_pred CCCCCeeeecCCCceEEEEeCceeCHHHHHHHHHHHHHHHHHHhhcCccc--eEEEEEcCCCCHHHHHHHHHHHHHcCCc
Q psy15216 717 TNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIF--GAVITVPAYFNDIQRQFTKNAAKLAGLN 794 (2602)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~--~~ViTVPa~f~~~qr~~~~~Aa~~AGl~ 794 (2602)
.+.+...++++.+|++++..++..++..+. .+|||||++|++.||+++++|++.||++
T Consensus 68 --------------------~G~I~d~d~~~~~l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l~~a~~~ag~~ 127 (335)
T PRK13929 68 --------------------DGVIADYDMTTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISDAVKNCGAK 127 (335)
T ss_pred --------------------CCccCCHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHHHHHHHHcCCC
Confidence 122334488999999999999888886654 7999999999999999999999999999
Q ss_pred eEEEechhHHHHHHhhhccCcccceEEEEEeCCceEEEEEEEEECCEEEEEEEecCCCCcchHHHHHHHHHHHHHHhhcc
Q psy15216 795 VLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKK 874 (2602)
Q Consensus 795 ~~~li~EPtAAAl~y~~~~~~~~~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~~ 874 (2602)
++.+++||+|||++|++... .+..++|+|+||||+|++++++.+ ++ ..++..+||.+||+.|.+++.+++....
T Consensus 128 ~~~li~ep~Aaa~~~g~~~~-~~~~~lvvDiG~gtt~v~vi~~~~----~~-~~~~~~~GG~~id~~l~~~l~~~~~~~~ 201 (335)
T PRK13929 128 NVHLIEEPVAAAIGADLPVD-EPVANVVVDIGGGTTEVAIISFGG----VV-SCHSIRIGGDQLDEDIVSFVRKKYNLLI 201 (335)
T ss_pred eeEeecCHHHHHHhcCCCcC-CCceEEEEEeCCCeEEEEEEEeCC----EE-EecCcCCHHHHHHHHHHHHHHHHhCcCc
Confidence 99999999999999987644 356789999999999999998754 22 3456789999999999999987653221
Q ss_pred CCHHHHHHHHHHHHHHHHHccccc----ceEEEEE---ecCCceEEEEeCHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-
Q psy15216 875 LSYKDVNILMIKSREIKELLSYQS----SVKLNVK---LSDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLT- 946 (2602)
Q Consensus 875 ~~~~~~~~l~~~~e~~K~~LS~~~----~~~~~i~---~~~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~a~~~- 946 (2602)
. ...||++|+.++... ...+.+. +..+....+++++++|++++.+++.++.+.|.+.|+++...
T Consensus 202 -~-------~~~AE~iK~~l~~~~~~~~~~~~~v~g~~~~~~~p~~i~i~~~~~~~~i~~~l~~i~~~i~~~L~~~~~~l 273 (335)
T PRK13929 202 -G-------ERTAEQVKMEIGYALIEHEPETMEVRGRDLVTGLPKTITLESKEIQGAMRESLLHILEAIRATLEDCPPEL 273 (335)
T ss_pred -C-------HHHHHHHHHHHcCCCCCCCCceEEEeCCccCCCCCeEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 1 257999999998632 2223332 22344568999999999999999999999999999998643
Q ss_pred -ccccc-eEEEecCccchHHHHHHHHhhccCcccCcCCcchHhHHHHHHHh
Q psy15216 947 -IKDIN-NVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQA 995 (2602)
Q Consensus 947 -~~~i~-~V~LvGG~sr~P~v~~~l~~~f~~~~~~~~~p~~aVa~GAa~~a 995 (2602)
.+.++ .|+|+||+|++|.+++++++.|+.++....||+++|++||+..-
T Consensus 274 ~~~~~~~gIvLtGG~s~lpgl~e~l~~~~~~~v~~~~~P~~~Va~Ga~~~~ 324 (335)
T PRK13929 274 SGDIVDRGVILTGGGALLNGIKEWLSEEIVVPVHVAANPLESVAIGTGRSL 324 (335)
T ss_pred chhhcCCCEEEEchhhhhhhHHHHHHHHHCCCceeCCCHHHHHHHHHHHHH
Confidence 46677 69999999999999999999999998888999999999999863
|
|
| >cd06453 SufS_like Cysteine desulfurase (SufS)-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=358.23 Aligned_cols=350 Identities=30% Similarity=0.466 Sum_probs=298.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCC-CCcEEEeCCHHHHHHHHHHhcc
Q psy15216 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYAD-PREIIWTSGATESNNLAIKGAA 79 (2602)
Q Consensus 1 Ld~a~~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~-~~~Iv~t~g~T~al~~~~~~l~ 79 (2602)
|||++++++|+.+++++.+++...+.+|+++.+..+.......+++|+.+++++|++ ++++++++|+|+|+++++.++.
T Consensus 3 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~l~ 82 (373)
T cd06453 3 LDNAATSQKPQPVIDAIVDYYRHYNANVHRGVHELSARATDAYEAAREKVARFINAPSPDEIIFTRNTTEAINLVAYGLG 82 (373)
T ss_pred ccCccccCCCHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCHHHHHHHHHHHhh
Confidence 799999999999999999999888888887677777777888999999999999997 7789999999999999999987
Q ss_pred ccccc--CCCEEEEcCCCCcccHHHHHHH-HhCCcEEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHH
Q psy15216 80 HFYKK--RGKHIITVQTEHKSVLDSIRKL-ENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPIL 156 (2602)
Q Consensus 80 ~~~~~--~gd~Vlv~~~~~~s~~~~~~~~-~~~G~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~ 156 (2602)
.. +||+|++++++|+++...+..+ +..|++++.++.++++.+|++++++++++++++|++++++||||.+.|++
T Consensus 83 ---~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~~~tG~~~~~~ 159 (373)
T cd06453 83 ---RANKPGDEIVTSVMEHHSNIVPWQQLAERTGAKLKVVPVDDDGQLDLEALEKLLTERTKLVAVTHVSNVLGTINPVK 159 (373)
T ss_pred ---hcCCCCCEEEECcchhHHHHHHHHHHHhhcCcEEEEeecCCCCCcCHHHHHHHhcCCceEEEEeCcccccCCcCCHH
Confidence 22 8999999999999976665544 46699999999988888999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCEEEEecccccccccccCCCCCccEEEeccccccCCCCcEEEEEecCCCCcccceecCCCc---------
Q psy15216 157 EIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGH--------- 227 (2602)
Q Consensus 157 ~I~~la~~~g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K~~Gp~G~G~l~~~~~~~~~l~~~~~g~~~--------- 227 (2602)
+|.++|++||+++++|++|+.|..++++..+++|++++|+||+++++|+|++++++++++.+.+...+|..
T Consensus 160 ~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~g~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 239 (373)
T cd06453 160 EIGEIAHEAGVPVLVDGAQSAGHMPVDVQDLGCDFLAFSGHKMLGPTGIGVLYGKEELLEEMPPYGGGGEMIEEVSFEET 239 (373)
T ss_pred HHHHHHHHcCCEEEEEhhhhcCceeeeccccCCCEEEeccccccCCCCcEEEEEchHHhhcCCCeecCCCcccccccccc
Confidence 99999999999999999999999888888889999999999988888899999999988888876654432
Q ss_pred -----cccccccCcchhHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEccc
Q psy15216 228 -----EYGLRSGTLATHQIVGMGEAFRLAR-IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI 301 (2602)
Q Consensus 228 -----~~~~~~gt~~~~~~~al~~al~~~~-~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~ 301 (2602)
..++..++++...++++.+++++.. .++++..++..++++++++.|.+ +++++++.++... ...+.+.++..
T Consensus 240 ~~~~~~~~~~~~t~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~~~~~-~~~~~~~~~~~ 317 (373)
T cd06453 240 TYADLPHKFEAGTPNIAGAIGLGAAIDYLEKIGMEAIAAHEHELTAYALERLSE-IPGVRVYGDAEDR-AGVVSFNLEGI 317 (373)
T ss_pred ccCCCccccCCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhc-CCCeEEeCCcccc-CCeEEEEECCc
Confidence 1235568999999999999999554 46788999999999999999988 7888888543332 44566666666
Q ss_pred ChhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHH
Q psy15216 302 EGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLL 366 (2602)
Q Consensus 302 ~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L 366 (2602)
+..++.+.| +||.+++|..|.++ ....++.. ++||+|+++++|++|+++++++|
T Consensus 318 ~~~~i~~~l~~~gi~i~~g~~~~~~------~~~~~~~~-----~~iRis~~~~~t~~di~~~~~~l 373 (373)
T cd06453 318 HPHDVATILDQYGIAVRAGHHCAQP------LMRRLGVP-----GTVRASFGLYNTEEEIDALVEAL 373 (373)
T ss_pred CHHHHHHHHHHCCEEeccCccchhH------HHHHhCCC-----CeEEEEecCCCCHHHHHHHHhhC
Confidence 667777776 79999988877653 23344443 78999999999999999999875
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. |
| >PRK13928 rod shape-determining protein Mbl; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=346.02 Aligned_cols=307 Identities=23% Similarity=0.320 Sum_probs=240.6
Q ss_pred EEEEcCcccEEEEEEECCeEEEEeCCCCCccccEEEEEecCC-c-EEecHHHHhhhccCCCCchhhhhhhcCCCCCCCCC
Q psy15216 2036 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDG-K-IYVGKKAKITQNIDPKNTISSIKRFIARDLKNINT 2113 (2602)
Q Consensus 2036 vGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~~~-~-~~vG~~A~~~~~~~p~~~~~~~K~~lg~~~~~~~~ 2113 (2602)
+||||||+||.++.. ++..++. .||+|++..++ . ..+|..|+....+.|.+.... ++.
T Consensus 6 ~gIDlGt~~~~i~~~--~~~~v~~-------~psvv~~~~~~~~i~~vG~~A~~~~~~~p~~~~~~------~pi----- 65 (336)
T PRK13928 6 IGIDLGTANVLVYVK--GKGIVLN-------EPSVVAIDKNTNKVLAVGEEARRMVGRTPGNIVAI------RPL----- 65 (336)
T ss_pred eEEEcccccEEEEEC--CCCEEEc-------cCCEEEEECCCCeEEEecHHHHHhhhcCCCCEEEE------ccC-----
Confidence 899999999999876 5445554 59999998543 3 479999988777766665411 111
Q ss_pred CCCCeeeecCCCceEEEecCceeCHHHHHHHHHHHHHHHHHHhhccccceEEEeeCCCCCHHHHHHHHHHHHHcCCceeE
Q psy15216 2114 NSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLR 2193 (2602)
Q Consensus 2114 ~~~~~~~~~~~g~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~l~~Aa~~AGl~~~~ 2193 (2602)
..+.....+++..+++++.+.+..........+|||||++|+..||+++++|++.||++.+.
T Consensus 66 ------------------~~G~i~d~~~~~~~l~~~~~~~~~~~~~~~p~~vitvP~~~~~~~r~~~~~a~~~ag~~~~~ 127 (336)
T PRK13928 66 ------------------RDGVIADYDVTEKMLKYFINKACGKRFFSKPRIMICIPTGITSVEKRAVREAAEQAGAKKVY 127 (336)
T ss_pred ------------------CCCeEecHHHHHHHHHHHHHHHhccCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCceE
Confidence 11233455677778888876554332233347999999999999999999999999999999
Q ss_pred eechhHHHHHHhhhccCCCCceEEEEEeCCceEEEEEEEEeCCEEEEEEEecCCCCchhHHHHHHHHHHHHHHhhhcCCh
Q psy15216 2194 LLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLSY 2273 (2602)
Q Consensus 2194 li~EP~AAAl~y~~~~~~~~~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~~~~~ 2273 (2602)
+++||+|||++|+.... .+..++|||+||||||+++++... ++ ..++..+||++||+.|.+++.+++ .....
T Consensus 128 li~ep~Aaa~~~g~~~~-~~~~~lVvDiGggttdvsvv~~g~----~~-~~~~~~lGG~did~~i~~~l~~~~-~~~~~- 199 (336)
T PRK13928 128 LIEEPLAAAIGAGLDIS-QPSGNMVVDIGGGTTDIAVLSLGG----IV-TSSSIKVAGDKFDEAIIRYIRKKY-KLLIG- 199 (336)
T ss_pred ecccHHHHHHHcCCccc-CCCeEEEEEeCCCeEEEEEEEeCC----EE-EeCCcCCHHHHHHHHHHHHHHHHh-chhcC-
Confidence 99999999999987553 345689999999999999998764 22 345789999999999999998763 11111
Q ss_pred hHHHHHHHHHHHHHHHhcccc----eEEEEEE---ecCCceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCcc
Q psy15216 2274 KDVNILMIKSREIKELLSYQS----SVKLNVK---LSDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDAN--LTIK 2344 (2602)
Q Consensus 2274 ~~~~~l~~~~e~~K~~ls~~~----~~~~~i~---~~~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~~~--~~~~ 2344 (2602)
...+|++|+.++... ...+.+. +..+....++|+|++|++++++.++++.+.+.+.|+.++ +...
T Consensus 200 ------~~~ae~lK~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~i~~~~~~eii~~~~~~i~~~i~~~l~~~~~~~~~~ 273 (336)
T PRK13928 200 ------ERTAEEIKIKIGTAFPGAREEEMEIRGRDLVTGLPKTITVTSEEIREALKEPVSAIVQAVKSVLERTPPELSAD 273 (336)
T ss_pred ------HHHHHHHHHHhcccccccCCcEEEEecccccCCCceEEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCccccHh
Confidence 257999999986541 1233332 223445678999999999999999999999999999986 4456
Q ss_pred ccc-eEEEEeCccchHHHHHHHHhhcCCcccCCCCccchhhhHHHHHhHHh
Q psy15216 2345 DIN-NVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFL 2394 (2602)
Q Consensus 2345 ~i~-~V~LvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~aVa~GAa~~a~~~ 2394 (2602)
.++ .|+|+||+|++|.|++++++.|+.++....||+++||+|||+++..+
T Consensus 274 ~i~~~IvL~GG~s~ipgi~e~l~~~~~~~v~~~~~P~~ava~Gaa~~~~~~ 324 (336)
T PRK13928 274 IIDRGIIMTGGGALLHGLDKLLAEETKVPVYIAEDPISCVALGTGKMLENI 324 (336)
T ss_pred hcCCCEEEECcccchhhHHHHHHHHHCCCceecCCHHHHHHHHHHHHHhch
Confidence 677 79999999999999999999999998889999999999999998654
|
|
| >PRK13929 rod-share determining protein MreBH; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-32 Score=341.50 Aligned_cols=305 Identities=23% Similarity=0.331 Sum_probs=245.3
Q ss_pred EEEEEcCcccEEEEEEECCeEEEEeCCCCCccccEEEEEecCCc--EEecHHHHhhhccCCCCchhhhhhhcCCCCCCCC
Q psy15216 2035 SIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGK--IYVGKKAKITQNIDPKNTISSIKRFIARDLKNIN 2112 (2602)
Q Consensus 2035 vvGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~~~~--~~vG~~A~~~~~~~p~~~~~~~K~~lg~~~~~~~ 2112 (2602)
.+|||||||||++ +.+++.. +.| .||+|++..++. +.||.+|+.+..++|.++... +-+ .
T Consensus 6 ~~giDlGt~~~~i--~~~~~~~-~~~------~ps~va~~~~~~~~~~vG~~A~~~~~~~p~~~~~~--~pi----~--- 67 (335)
T PRK13929 6 EIGIDLGTANILV--YSKNKGI-ILN------EPSVVAVDTETKAVLAIGTEAKNMIGKTPGKIVAV--RPM----K--- 67 (335)
T ss_pred eEEEEcccccEEE--EECCCcE-Eec------CCcEEEEECCCCeEEEeCHHHHHhhhcCCCcEEEE--ecC----C---
Confidence 4999999999985 5566654 444 499999985544 689999999999999877532 111 1
Q ss_pred CCCCCeeeecCCCceEEEecCceeCHHHHHHHHHHHHHHHHHHhhccccc--eEEEeeCCCCCHHHHHHHHHHHHHcCCc
Q psy15216 2113 TNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIF--GAVITVPAYFNDIQRQFTKNAAKLAGLN 2190 (2602)
Q Consensus 2113 ~~~~~~~~~~~~g~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~--~~ViTVPa~f~~~qr~~l~~Aa~~AGl~ 2190 (2602)
.+....-++++.+|++++..++..++..+. .+|||||++|+..||+++++|++.||++
T Consensus 68 --------------------~G~I~d~d~~~~~l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l~~a~~~ag~~ 127 (335)
T PRK13929 68 --------------------DGVIADYDMTTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISDAVKNCGAK 127 (335)
T ss_pred --------------------CCccCCHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHHHHHHHHcCCC
Confidence 112233478899999999999888876554 7999999999999999999999999999
Q ss_pred eeEeechhHHHHHHhhhccCCCCceEEEEEeCCceEEEEEEEEeCCEEEEEEEecCCCCchhHHHHHHHHHHHHHHhhhc
Q psy15216 2191 VLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKK 2270 (2602)
Q Consensus 2191 ~~~li~EP~AAAl~y~~~~~~~~~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~~ 2270 (2602)
++.+++||+|||++|++.... +..++|+|+||||+|+++++..+ ++ ..++..+||.+||+.|.+++.+++. -.
T Consensus 128 ~~~li~ep~Aaa~~~g~~~~~-~~~~lvvDiG~gtt~v~vi~~~~----~~-~~~~~~~GG~~id~~l~~~l~~~~~-~~ 200 (335)
T PRK13929 128 NVHLIEEPVAAAIGADLPVDE-PVANVVVDIGGGTTEVAIISFGG----VV-SCHSIRIGGDQLDEDIVSFVRKKYN-LL 200 (335)
T ss_pred eeEeecCHHHHHHhcCCCcCC-CceEEEEEeCCCeEEEEEEEeCC----EE-EecCcCCHHHHHHHHHHHHHHHHhC-cC
Confidence 999999999999999876433 45789999999999999998765 22 4456899999999999999986531 11
Q ss_pred CChhHHHHHHHHHHHHHHHhcccc----eEEEEEE---ecCCceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-
Q psy15216 2271 LSYKDVNILMIKSREIKELLSYQS----SVKLNVK---LSDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLT- 2342 (2602)
Q Consensus 2271 ~~~~~~~~l~~~~e~~K~~ls~~~----~~~~~i~---~~~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~~~~~- 2342 (2602)
.. ...+|++|+.++... ...+.+. +..+....+++++++|++++.+.+.++.+.|.+.|+++...
T Consensus 201 ~~-------~~~AE~iK~~l~~~~~~~~~~~~~v~g~~~~~~~p~~i~i~~~~~~~~i~~~l~~i~~~i~~~L~~~~~~l 273 (335)
T PRK13929 201 IG-------ERTAEQVKMEIGYALIEHEPETMEVRGRDLVTGLPKTITLESKEIQGAMRESLLHILEAIRATLEDCPPEL 273 (335)
T ss_pred cC-------HHHHHHHHHHHcCCCCCCCCceEEEeCCccCCCCCeEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 11 257999999998632 2223332 22334468899999999999999999999999999998644
Q ss_pred -ccccc-eEEEEeCccchHHHHHHHHhhcCCcccCCCCccchhhhHHHHHh
Q psy15216 2343 -IKDIN-NVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQA 2391 (2602)
Q Consensus 2343 -~~~i~-~V~LvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~aVa~GAa~~a 2391 (2602)
...++ .|+|+||+|++|.+++++++.|+.++....||+++|++||+..-
T Consensus 274 ~~~~~~~gIvLtGG~s~lpgl~e~l~~~~~~~v~~~~~P~~~Va~Ga~~~~ 324 (335)
T PRK13929 274 SGDIVDRGVILTGGGALLNGIKEWLSEEIVVPVHVAANPLESVAIGTGRSL 324 (335)
T ss_pred chhhcCCCEEEEchhhhhhhHHHHHHHHHCCCceeCCCHHHHHHHHHHHHH
Confidence 35677 69999999999999999999999998888999999999999863
|
|
| >PLN02724 Molybdenum cofactor sulfurase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-32 Score=375.66 Aligned_cols=361 Identities=20% Similarity=0.284 Sum_probs=284.9
Q ss_pred eeeccCCC-CCCCHH-HHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCC--cEEEeCCHHHHHHHH
Q psy15216 1395 NIVFKDAT-TPIDPR-VVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPR--EIIWTSGATESNNLA 1470 (2602)
Q Consensus 1395 ~v~L~~~~-~~~~~~-v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~--~iv~t~gaT~al~~a 1470 (2602)
.+|||++. ++.++. +.+++.+++...++|||+ .|..+......++++|+.+++++|++++ +|+||+|+|+|++++
T Consensus 35 ~iYLD~Aatt~~~~~~V~~~~~~~~~~~~~np~s-~~~~s~~~~~~~e~aR~~ia~~lga~~~~~~VvFtsnaT~alnlv 113 (805)
T PLN02724 35 VVYLDHAGATLYSESQLEAALADFSSNVYGNPHS-QSDSSMRSSDTIESARQQVLEYFNAPPSDYACVFTSGATAALKLV 113 (805)
T ss_pred CEeEeCCCCCCCCHHHHHHHHHHHHhhccCCCCc-CcchhhhHHHHHHHHHHHHHHHhCCCccceEEEEeCChHHHHHHH
Confidence 58998765 454554 455555676777889996 5666777888999999999999999765 489999999999999
Q ss_pred HHhhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccC--------CCCCcCh--hHHHhhc----------c
Q psy15216 1471 IKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK--------NNGLITL--SQLEEKI----------C 1530 (2602)
Q Consensus 1471 l~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~--------~~~~id~--d~l~~~i----------~ 1530 (2602)
+.++. +++||+|+++..+|+++..+++.+++.|+++++++++ ..+.+++ ++|++.+ .
T Consensus 114 a~~l~---~~~gd~Iv~t~~eH~svl~~~~~a~~~G~~v~~v~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~l~~~~~~~ 190 (805)
T PLN02724 114 GETFP---WSSESHFCYTLENHNSVLGIREYALEKGAAAIAVDIEEAANQPTNSQGSVVVKSRGLQRRNTSKLQKREDDG 190 (805)
T ss_pred HHHCC---CCCCCeEEEeeccccchHHHHHHHHHcCCeEEeccchhccccccccccccccchhhhhhhhhhhhccccccC
Confidence 99885 5899999999999999998777777789999999876 3344443 6677664 2
Q ss_pred CCceEEEEeccccccccccChHHHHHHhhhc--------CCEEEEecccccCcccccCCCCCccEEEEccccccC-CCce
Q psy15216 1531 SDTILVSVMLVNNEIGVIQPILEIGELCRSK--------GVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYG-PKGI 1601 (2602)
Q Consensus 1531 ~~t~lv~l~~~~n~tG~~~~l~~I~~ia~~~--------gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K~~g-p~G~ 1601 (2602)
++|++|+++|.+|.||.++|++.|..+++.+ ++++++|+||++|+.++|+.++++||+++|+||++| |.|+
T Consensus 191 ~~t~LVa~~~vsN~tG~i~pi~~i~~~~~~~~~~~~~~g~~~v~vDaaQ~~g~~piDv~~~~~Dfl~~S~HK~~GgP~G~ 270 (805)
T PLN02724 191 EAYNLFAFPSECNFSGAKFPLDLVKLIKDNQHSNFSKSGRWMVLLDAAKGCGTSPPDLSRYPADFVVVSFYKIFGYPTGL 270 (805)
T ss_pred CCcceEEEEccccCCCCcCCHHHHHHHHHhcccccccCcceEEEeehhhhcCCCCCChhhcCCCEEEEecceeccCCCCc
Confidence 5678999999999999999999775555432 367999999999999999999999999999999877 9999
Q ss_pred EEEEEecCCCCccccccccCCc-----------------cccCCCCCcchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q psy15216 1602 GALYIRRNPRTRIEAQIHGGGH-----------------EYGLRSGTLATHQIVGMGEAFRLARI-EMKEELKRILFLQK 1663 (2602)
Q Consensus 1602 G~l~~~~~~~~~l~~~~~g~~~-----------------~~~~~~gt~~~~~~~al~~aL~~~~~-~~~~~~~~~~~l~~ 1663 (2602)
|+||+++++.+.+.|.+.||++ +.+++.||+++++++++.+|++++.. +++.+.++...+++
T Consensus 271 G~L~vr~~~~~~l~p~~~GGg~~~~~~~~~~~~~~~~~~~~rfE~GT~n~~~i~~l~aal~~l~~ig~~~I~~~~~~L~~ 350 (805)
T PLN02724 271 GALLVRRDAAKLLKKKYFGGGTVAASIADIDFVKRRERVEQRFEDGTISFLSIAALRHGFKLLNRLTISAIAMHTWALTH 350 (805)
T ss_pred eEEEEehhhhhhhcCCccCCCceEEEecccceeeccccHHHHhcCCCcchhHHHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 9999999988888888887743 34688999999999999999997665 78999999999999
Q ss_pred HHHHHHhhcCC------cEEEeCCCC-----CCCCceEEEEEecCCcH-----HHHH--hcCCEEEccccccCCCCCChh
Q psy15216 1664 RLYNGLMESIE------EIYINGDMN-----NRIPHNLNISFNFIEGE-----SLLM--AIKDIAVSSGSACTSASLEPS 1725 (2602)
Q Consensus 1664 ~l~~~L~~~~~------gl~i~~~~~-----~~~~~~~~~~~~~~~~~-----~~~~--~L~gI~v~~g~~~~~~~~~~~ 1725 (2602)
++++.|.+ ++ ++.++++.. .....++.|.+.+.++. ++.. ..+||.+|.|.+|.++..
T Consensus 351 ~l~~~L~~-l~~~~g~~~v~iyg~~~~~~~~~~r~~ivsFnv~~~~~~~v~~~~v~~l~~~~gI~vR~G~~Ca~~~~--- 426 (805)
T PLN02724 351 YVANSLRN-LKHGNGAPVCVLYGNHTFKLEFHIQGPIVTFNLKRADGSWVGHREVEKLASLSGIQLRTGCFCNPGAC--- 426 (805)
T ss_pred HHHHHHHh-ccCCCCCeEEEEcCCCCCCCCcccccCEEEEEEEcCCCCEeCHHHHHHHHHhcCcEEeeccccCchHH---
Confidence 99999987 54 688887541 11222344444443322 2222 227999999999987622
Q ss_pred HHHHHcCCCc---------------------cccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1726 YVLRALGCND---------------------ELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1726 ~~~~~~~~~~---------------------~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
...+|+.. ....|.||+|+++|||.+|||+++++|++.
T Consensus 427 --~~~lg~~~~~l~~~~~~~~~c~~~~~~~~~~~~G~vRvS~g~ynt~eDvd~lv~~l~~~ 485 (805)
T PLN02724 427 --AKYLGLSHKDLQANFEAGHVCWDDQDVIHGRPTGAVRVSFGYMSTFEDCQKFIDFIISS 485 (805)
T ss_pred --HHHcCCCHHHHHHHhhcCCccCchhheecCcccceEEEEcCccCCHHHHHHHHHHHHHH
Confidence 12233211 112489999999999999999999999984
|
|
| >TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-31 Score=351.01 Aligned_cols=354 Identities=21% Similarity=0.278 Sum_probs=289.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhccc
Q psy15216 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAH 80 (2602)
Q Consensus 1 Ld~a~~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~ 80 (2602)
||+++++++|+.+++++.+++.....+++. .|.......+..+++|+.+++++|+++++|++++|+|+++++++.++.
T Consensus 21 l~~~~~~~~p~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~ia~~~~~~~~~v~~~~~~t~~l~~~~~~~~- 98 (397)
T TIGR01976 21 FDNPAGTQIPQSVADAVSAALTRSNANRGG-AYESSRRADQVVDDAREAVADLLNADPPEVVFGANATSLTFLLSRAIS- 98 (397)
T ss_pred ecCCccCCCCHHHHHHHHHHHHhcCCCCCC-CchHHHHHHHHHHHHHHHHHHHcCCCCCeEEEeCCHHHHHHHHHHHHH-
Confidence 799999999999999999998765555543 344444455678999999999999987789999999999998888773
Q ss_pred ccccCCCEEEEcCCCCcccHHHH-HHHHhCCcEEEEeccCC-CCccChHHHHhhccCCceEEEEecccCcccccccHHHH
Q psy15216 81 FYKKRGKHIITVQTEHKSVLDSI-RKLENDGFRVTYLKPKN-NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEI 158 (2602)
Q Consensus 81 ~~~~~gd~Vlv~~~~~~s~~~~~-~~~~~~G~~v~~v~~~~-~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I 158 (2602)
..+++||+|++++++|+++...+ ..++..|++++.+++++ ++.+|+++++++++++|++|++++++||||.+.|+++|
T Consensus 99 ~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~i~~~~~lv~i~~~~n~tG~~~~~~~i 178 (397)
T TIGR01976 99 RRWGPGDEVIVTRLDHEANISPWLQAAERAGAKVKWARVDEATGELHPDDLASLLSPRTRLVAVTAASNTLGSIVDLAAI 178 (397)
T ss_pred hcCCCCCEEEEcCCchHhHHHHHHHHHHhcCCEEEEEeccccCCCcCHHHHHHhcCCCceEEEEeCCCCCCCccCCHHHH
Confidence 12479999999999999987776 44466799999999876 68899999999999999999999999999999999999
Q ss_pred HHHHHhcCCEEEEecccccccccccCCCCCccEEEeccccccCCCCcEEEEEecCCCCcccceecCC---CccccccccC
Q psy15216 159 GELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGG---GHEYGLRSGT 235 (2602)
Q Consensus 159 ~~la~~~g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K~~Gp~G~G~l~~~~~~~~~l~~~~~g~---~~~~~~~~gt 235 (2602)
.++||+||+++++|++|+.|..++++.++++|++++|+||++||+ +|++++++++++.+.+....+ ....+++.||
T Consensus 179 ~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~-~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~gt 257 (397)
T TIGR01976 179 TELVHAAGALVVVDAVHYAPHGLIDVQATGADFLTCSAYKFFGPH-MGILWGRPELLMNLPPYKLTFSYDTGPERFELGT 257 (397)
T ss_pred HHHHHHcCCEEEEehhhhccccCCCHHHcCCCEEEEechhhcCCc-eEEEEEcHHHHhhCCCccccCccCCCcchhcCCC
Confidence 999999999999999999998888888889999999999999986 899999998877776644332 2245678899
Q ss_pred cchhHHHHHHHHHHHHHH---------------hHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCC-CCCCceEEEEEc
Q psy15216 236 LATHQIVGMGEAFRLARI---------------EMKEELKRILFLQKRLYNGLMESIEEIYINGDMN-NRIPHNLNISFN 299 (2602)
Q Consensus 236 ~~~~~~~al~~al~~~~~---------------~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~-~~~~~~~~~~~~ 299 (2602)
+++..++++.+|+++... +++++.++..++++++++.|.+ +++++++.+.. ....+++.+.++
T Consensus 258 ~~~~~~~~l~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~ 336 (397)
T TIGR01976 258 PQYELLAGVVAAVDYLAGLGESANGSRRERLVASFQAIDAYENRLAEYLLVGLSD-LPGVTLYGVARLAARVPTVSFTVH 336 (397)
T ss_pred CCHHHHHHHHHHHHHHHHhCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhc-CCCEEEeCCCCccCCCceEEEEeC
Confidence 999999999999986532 2577788889999999999987 67798886522 112234445555
Q ss_pred ccChhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHH
Q psy15216 300 FIEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLL 366 (2602)
Q Consensus 300 ~~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L 366 (2602)
..+..++.+.| +||.++.+..|.+ ..++.+++... .++||||+++|+|++|+++++++|
T Consensus 337 ~~~~~~l~~~L~~~gI~v~~~~~~~~------~~~~~~~~~~~--~~~iRis~~~~~t~~di~~l~~~l 397 (397)
T TIGR01976 337 GLPPQRVVRRLADQGIDAWAGHFYAV------RLLRRLGLNDE--GGVVRVGLAHYNTAEEVDRLLEAL 397 (397)
T ss_pred CcCHHHHHHHHHHCCeEEEeCccchH------HHHHHhCCCCC--CCeEEEEeeccCCHHHHHHHHHhC
Confidence 55667777777 7999998887754 35666676421 378999999999999999999875
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase. |
| >TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-31 Score=343.29 Aligned_cols=352 Identities=32% Similarity=0.526 Sum_probs=288.8
Q ss_pred CCCCCCC-CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCC-CcEEEeCCHHHHHHHHHHhc
Q psy15216 1 MDYSATT-PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADP-REIIWTSGATESNNLAIKGA 78 (2602)
Q Consensus 1 Ld~a~~~-~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~-~~Iv~t~g~T~al~~~~~~l 78 (2602)
||+++++ |+|+.+++++.+++.....+++.+.+..........+++|+.+++++|+++ ++|++++|+|++++.++.++
T Consensus 3 ld~a~~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~ 82 (376)
T TIGR01977 3 FDNAATTYPKPDEVYEAMADFYKNYGGSPGRGRYRLALRASREVEETRQLLAKLFNAPSSAHVVFTNNATTALNIALKGL 82 (376)
T ss_pred ccCcccCCCCCHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHHhc
Confidence 7898887 788999999999887644455543343333445788999999999999854 48999999999999999987
Q ss_pred ccccccCCCEEEEcCCCCcccHHHHHHH-HhCCcEEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHH
Q psy15216 79 AHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILE 157 (2602)
Q Consensus 79 ~~~~~~~gd~Vlv~~~~~~s~~~~~~~~-~~~G~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~ 157 (2602)
. ++||+|+++.++|+++...+..+ +..|++++.++.++++.+|+++++++++++|+++++++++||||.++|+++
T Consensus 83 ~----~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~~v~~~~~~n~tG~~~~~~~ 158 (376)
T TIGR01977 83 L----KEGDHVITTPMEHNSVARPLECLKEQIGVEITIVKCDNEGLISPERIKRAIKTNTKLIVVSHASNVTGTILPIEE 158 (376)
T ss_pred c----CCCCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecCCCCCcCHHHHHHhcCCCCeEEEEECCCCCccccCCHHH
Confidence 6 79999999999999987776554 556999999998888889999999999999999999999999999999999
Q ss_pred HHHHHHhcCCEEEEecccccccccccCCCCCccEEEecccc-ccCCCCcEEEEEecCCCCcccceecCCCc---------
Q psy15216 158 IGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGH--------- 227 (2602)
Q Consensus 158 I~~la~~~g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K-~~Gp~G~G~l~~~~~~~~~l~~~~~g~~~--------- 227 (2602)
|.++||++|+++++|++|++|..++++..+++|++++|+|| ++||.|+|+++++++. .+.+...++..
T Consensus 159 i~~l~~~~~~~livD~a~~~g~~~~~~~~~~~D~~~~s~~K~l~~p~g~g~l~~~~~~--~~~~~~~~~~~~~~~~~~~~ 236 (376)
T TIGR01977 159 IGELAQENGIFFILDAAQTAGVIPIDMTELAIDMLAFTGHKGLLGPQGTGGLYIREGI--KLKPLKSGGTGSHSALIDQP 236 (376)
T ss_pred HHHHHHHcCCEEEEEhhhccCccCCCchhcCCCEEEecccccccCCCCceEEEEcCCc--CcCceecCCCcccccccccc
Confidence 99999999999999999999999999998999999999999 5679999999998875 34444433221
Q ss_pred ---cccccccCcchhHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCC-CCCceEEEEEcccC
Q psy15216 228 ---EYGLRSGTLATHQIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNN-RIPHNLNISFNFIE 302 (2602)
Q Consensus 228 ---~~~~~~gt~~~~~~~al~~al~~~-~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~-~~~~~~~~~~~~~~ 302 (2602)
..+++.||++...++++.+++++. ..+.+.+.+++..+++++++.|.+ .++++++.+.+. ....++.+.++..+
T Consensus 237 ~~~~~r~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~l~~~~~~~l~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~ 315 (376)
T TIGR01977 237 SELPDRFESGTLNTPGIAGLNAGIKFIEKIGIANIAKKECMLTEKLLNGLRE-INKVKIYGPADPANRVGVVSFTVEGID 315 (376)
T ss_pred ccchhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc-CCCeEEeCCCCccccCCeEEEEECCCC
Confidence 134677899999999999999954 456789999999999999999987 689998865322 22345556666667
Q ss_pred hhHHHHHh--C-CeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 303 GESLLMAI--K-DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 303 ~~~~~~~L--~-gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
..++...| + ||.++.|..|++. ....+|.. ..+.||++++.++|++|+++++++|++
T Consensus 316 ~~~~~~~L~~~~gi~v~~g~~~~~~------~~~~~g~~---~~~~iRis~~~~~t~~dv~~~~~~l~~ 375 (376)
T TIGR01977 316 SEEVADILDEKFDIATRTGLHCAPL------AHKTIGTF---ATGTIRLSLGYFNTEEEIEKLLEALSE 375 (376)
T ss_pred HHHHHHHHhccCCEEEEcccccchH------HHHHhCCC---CCCeEEEecCCCCCHHHHHHHHHHHhh
Confidence 77788777 4 9999999888653 22334322 247899999999999999999999974
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown. |
| >cd06453 SufS_like Cysteine desulfurase (SufS)-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-31 Score=343.84 Aligned_cols=351 Identities=29% Similarity=0.456 Sum_probs=292.2
Q ss_pred eeccCCC-CCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCC-CCcEEEeCCHHHHHHHHHHh
Q psy15216 1396 IVFKDAT-TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYAD-PREIIWTSGATESNNLAIKG 1473 (2602)
Q Consensus 1396 v~L~~~~-~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~-~~~iv~t~gaT~al~~al~~ 1473 (2602)
+|||++. .+.++.+++++.+++...+.+|+++.+..+........++|+.+++++|++ ++++++|+|+|+|+++++.+
T Consensus 1 ~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~ 80 (373)
T cd06453 1 VYLDNAATSQKPQPVIDAIVDYYRHYNANVHRGVHELSARATDAYEAAREKVARFINAPSPDEIIFTRNTTEAINLVAYG 80 (373)
T ss_pred CcccCccccCCCHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCHHHHHHHHHHH
Confidence 3676544 577899999999999888889988777778888889999999999999997 77899999999999999999
Q ss_pred hhhhhcc--CCCEEEEcCCCCcchHHHHHHH-HhCCcEEEEeccCCCCCcChhHHHhhccCCceEEEEeccccccccccC
Q psy15216 1474 AAHFYKK--RGKHIITVQTEHKSVLDSIRKL-ENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP 1550 (2602)
Q Consensus 1474 l~~~~~~--~gd~Vlv~~~~~~s~~~~~~~~-~~~G~~v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~ 1550 (2602)
+. .+ +||+|++++++|++....+..+ +..|+++++++.+.++.+|+++|++++++++++|+++|++||||.+.|
T Consensus 81 l~---~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~~~tG~~~~ 157 (373)
T cd06453 81 LG---RANKPGDEIVTSVMEHHSNIVPWQQLAERTGAKLKVVPVDDDGQLDLEALEKLLTERTKLVAVTHVSNVLGTINP 157 (373)
T ss_pred hh---hcCCCCCEEEECcchhHHHHHHHHHHHhhcCcEEEEeecCCCCCcCHHHHHHHhcCCceEEEEeCcccccCCcCC
Confidence 87 22 8999999999999976665444 456999999999888889999999999999999999999999999999
Q ss_pred hHHHHHHhhhcCCEEEEecccccCcccccCCCCCccEEEEccccccCCCceEEEEEecCCCCccccccccCCc-------
Q psy15216 1551 ILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGH------- 1623 (2602)
Q Consensus 1551 l~~I~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K~~gp~G~G~l~~~~~~~~~l~~~~~g~~~------- 1623 (2602)
+++|.++|++||+++++|++|+.|..++++.++++|++++|+||++++.|+|++++++++++.+.+...++..
T Consensus 158 ~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~g~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 237 (373)
T cd06453 158 VKEIGEIAHEAGVPVLVDGAQSAGHMPVDVQDLGCDFLAFSGHKMLGPTGIGVLYGKEELLEEMPPYGGGGEMIEEVSFE 237 (373)
T ss_pred HHHHHHHHHHcCCEEEEEhhhhcCceeeeccccCCCEEEeccccccCCCCcEEEEEchHHhhcCCCeecCCCcccccccc
Confidence 9999999999999999999999999888888889999999999988778899999999888888776544432
Q ss_pred -------cccCCCCCcchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEe
Q psy15216 1624 -------EYGLRSGTLATHQIVGMGEAFRLAR-IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN 1695 (2602)
Q Consensus 1624 -------~~~~~~gt~~~~~~~al~~aL~~~~-~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~ 1695 (2602)
..++..++++...++++.++++++. .+++.+.++..++++++++.|.+ ++++.+..++.. ......+.++
T Consensus 238 ~~~~~~~~~~~~~~t~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~~~~-~~~~~~~~~~ 315 (373)
T cd06453 238 ETTYADLPHKFEAGTPNIAGAIGLGAAIDYLEKIGMEAIAAHEHELTAYALERLSE-IPGVRVYGDAED-RAGVVSFNLE 315 (373)
T ss_pred ccccCCCccccCCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhc-CCCeEEeCCccc-cCCeEEEEEC
Confidence 1245668999999999999999554 46888899999999999999988 788888744322 2445566666
Q ss_pred cCCcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHH
Q psy15216 1696 FIEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLL 1762 (2602)
Q Consensus 1696 ~~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L 1762 (2602)
..+..++.+.| +||.+++|..|..+ ....++.. ++||+|+++++|++|+|+++++|
T Consensus 316 ~~~~~~i~~~l~~~gi~i~~g~~~~~~------~~~~~~~~-----~~iRis~~~~~t~~di~~~~~~l 373 (373)
T cd06453 316 GIHPHDVATILDQYGIAVRAGHHCAQP------LMRRLGVP-----GTVRASFGLYNTEEEIDALVEAL 373 (373)
T ss_pred CcCHHHHHHHHHHCCEEeccCccchhH------HHHHhCCC-----CeEEEEecCCCCHHHHHHHHhhC
Confidence 55666776666 79999988777543 22233433 78999999999999999999875
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. |
| >PRK13927 rod shape-determining protein MreB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-30 Score=331.80 Aligned_cols=306 Identities=23% Similarity=0.315 Sum_probs=232.8
Q ss_pred EEEEEcCcccEEEEEEECCeeEEEeCCCCCccccEEEEEecC-Cc-EEEcHHHHhhhccCCCCchhhhhhhhCCCCCCCC
Q psy15216 639 SIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPD-GK-IYVGKKAKITQNIDPKNTISSIKRFIARDLKNIN 716 (2602)
Q Consensus 639 vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~v~~~~~-~~-~~vG~~A~~~~~~~p~~~~~~~K~~lg~~~~~~~ 716 (2602)
.|||||||++++++. .|+..++ .+||+|+|.++ +. +++|..|+.+..++|.++... +
T Consensus 7 ~igIDlGt~~~~i~~--~~~~~~~-------~~ps~v~~~~~~~~~~~vG~~a~~~~~~~~~~~~~~--~---------- 65 (334)
T PRK13927 7 DLGIDLGTANTLVYV--KGKGIVL-------NEPSVVAIRTDTKKVLAVGEEAKQMLGRTPGNIVAI--R---------- 65 (334)
T ss_pred eeEEEcCcceEEEEE--CCCcEEE-------ecCCEEEEECCCCeEEEecHHHHHHhhcCCCCEEEE--e----------
Confidence 489999999999844 3333333 27999999765 33 589999998877777654311 1
Q ss_pred CCCCCeeeecCCCceEEEEeCceeCHHHHHHHHHHHHHHHHHHhhcCccceEEEEEcCCCCHHHHHHHHHHHHHcCCceE
Q psy15216 717 TNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVL 796 (2602)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~~~~Aa~~AGl~~~ 796 (2602)
|++ .+...-.+.+..+++++.......... ...+|||||++|++.||+++++|++.||++.+
T Consensus 66 ----pi~-------------~G~i~d~~~~~~ll~~~~~~~~~~~~~-~~~~vi~vP~~~~~~~r~~~~~a~~~ag~~~~ 127 (334)
T PRK13927 66 ----PMK-------------DGVIADFDVTEKMLKYFIKKVHKNFRP-SPRVVICVPSGITEVERRAVRESALGAGAREV 127 (334)
T ss_pred ----cCC-------------CCeecCHHHHHHHHHHHHHHHhhccCC-CCcEEEEeCCCCCHHHHHHHHHHHHHcCCCee
Confidence 110 111112234455555555544333221 23799999999999999999999999999999
Q ss_pred EEechhHHHHHHhhhccCcccceEEEEEeCCceEEEEEEEEECCEEEEEEEecCCCCcchHHHHHHHHHHHHHHhhccCC
Q psy15216 797 RLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLS 876 (2602)
Q Consensus 797 ~li~EPtAAAl~y~~~~~~~~~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~~~~ 876 (2602)
.+++||+|||++|+.... .+..++|||+||||||+++++.++. ...++.++||++||+.|.+++.+++.... +
T Consensus 128 ~li~ep~aaa~~~g~~~~-~~~~~lvvDiGggttdvs~v~~~~~-----~~~~~~~lGG~~id~~l~~~l~~~~~~~~-~ 200 (334)
T PRK13927 128 YLIEEPMAAAIGAGLPVT-EPTGSMVVDIGGGTTEVAVISLGGI-----VYSKSVRVGGDKFDEAIINYVRRNYNLLI-G 200 (334)
T ss_pred ccCCChHHHHHHcCCccc-CCCeEEEEEeCCCeEEEEEEecCCe-----EeeCCcCChHHHHHHHHHHHHHHHhCcCc-C
Confidence 999999999999987543 3456899999999999999987652 23455789999999999999987764321 1
Q ss_pred HHHHHHHHHHHHHHHHHcccccc----eEEEEE---ecCCceEEEEeCHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--c
Q psy15216 877 YKDVNILMIKSREIKELLSYQSS----VKLNVK---LSDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLT--I 947 (2602)
Q Consensus 877 ~~~~~~l~~~~e~~K~~LS~~~~----~~~~i~---~~~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~a~~~--~ 947 (2602)
...+|++|+.++.... ..+.+. ...+....++|+|++|++++.+.++++.+.|.++|+++... .
T Consensus 201 -------~~~ae~iK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~ 273 (334)
T PRK13927 201 -------ERTAERIKIEIGSAYPGDEVLEMEVRGRDLVTGLPKTITISSNEIREALQEPLSAIVEAVKVALEQTPPELAA 273 (334)
T ss_pred -------HHHHHHHHHHhhccCCCCCCceEEEeCcccCCCCCeEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCchhhh
Confidence 2568999999975432 233332 22345568899999999999999999999999999998643 2
Q ss_pred cccc-eEEEecCccchHHHHHHHHhhccCcccCcCCcchHhHHHHHHHhHH
Q psy15216 948 KDIN-NVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANF 997 (2602)
Q Consensus 948 ~~i~-~V~LvGG~sr~P~v~~~l~~~f~~~~~~~~~p~~aVa~GAa~~a~~ 997 (2602)
..++ .|+|+||+|++|.++++|++.|+.++....||+++||+||++++..
T Consensus 274 ~~~~~~IvL~GG~s~ipgl~~~l~~~~~~~v~~~~~P~~ava~Ga~~~~~~ 324 (334)
T PRK13927 274 DIVDRGIVLTGGGALLRGLDKLLSEETGLPVHVAEDPLTCVARGTGKALEN 324 (334)
T ss_pred hhhcCCEEEECchhhhhHHHHHHHHHHCCCcEecCCHHHHHHHHHHHHHhh
Confidence 3344 5999999999999999999999998888899999999999999854
|
|
| >TIGR00904 mreB cell shape determining protein, MreB/Mrl family | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.7e-30 Score=328.70 Aligned_cols=305 Identities=25% Similarity=0.309 Sum_probs=230.1
Q ss_pred EEEEcCcccEEEEEEECCeeEEEeCCCCCccccEEEEEecC----Cc--EEEcHHHHhhhccCCCCchhhhhhhhCCCCC
Q psy15216 640 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPD----GK--IYVGKKAKITQNIDPKNTISSIKRFIARDLK 713 (2602)
Q Consensus 640 vGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~v~~~~~----~~--~~vG~~A~~~~~~~p~~~~~~~K~~lg~~~~ 713 (2602)
+|||||||||++++...+ .++ ..||+|+|.++ .. ++||.+|+....+.|.++- +++-|..
T Consensus 5 ~giDlGt~~s~i~~~~~~--~~~-------~~psvv~~~~~~~~~~~~~~~vG~~A~~~~~~~~~~~~--~~~pi~~--- 70 (333)
T TIGR00904 5 IGIDLGTANTLVYVKGRG--IVL-------NEPSVVAIRTDRDAKTKSILAVGHEAKEMLGKTPGNIV--AIRPMKD--- 70 (333)
T ss_pred eEEecCcceEEEEECCCC--EEE-------ecCCEEEEecCCCCCCCeEEEEhHHHHHhhhcCCCCEE--EEecCCC---
Confidence 899999999999875333 333 37999999854 22 6799999887766666553 2322211
Q ss_pred CCCCCCCCeeeecCCCceEEEEeCceeCHHHHHHHHHHHHHHHHHHhhcCccceEEEEEcCCCCHHHHHHHHHHHHHcCC
Q psy15216 714 NINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGL 793 (2602)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~~~~Aa~~AGl 793 (2602)
+.+...+.+..+++++........+.....+|+|||++|+..||+++++|++.||+
T Consensus 71 ------------------------G~i~d~~~~~~~~~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~~~~~~~~ag~ 126 (333)
T TIGR00904 71 ------------------------GVIADFEVTEKMIKYFIKQVHSRKSFFKPRIVICVPSGITPVERRAVKESALSAGA 126 (333)
T ss_pred ------------------------CEEEcHHHHHHHHHHHHHHHhcccccCCCcEEEEeCCCCCHHHHHHHHHHHHHcCC
Confidence 11122234444555555443332222223799999999999999999999999999
Q ss_pred ceEEEechhHHHHHHhhhccCcccceEEEEEeCCceEEEEEEEEECCEEEEEEEecCCCCcchHHHHHHHHHHHHHHhhc
Q psy15216 794 NVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLK 873 (2602)
Q Consensus 794 ~~~~li~EPtAAAl~y~~~~~~~~~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~ 873 (2602)
+.+.+++||+|||++|+.... .+..++|||+||||+|+++++..+. ...++.++||++||+.|++++.+++...
T Consensus 127 ~~~~li~ep~aaa~~~g~~~~-~~~~~lVvDiG~gttdvs~v~~~~~-----~~~~~~~lGG~did~~l~~~l~~~~~~~ 200 (333)
T TIGR00904 127 REVYLIEEPMAAAIGAGLPVE-EPTGSMVVDIGGGTTEVAVISLGGI-----VVSRSIRVGGDEFDEAIINYIRRTYNLL 200 (333)
T ss_pred CeEEEecCHHHHHHhcCCccc-CCceEEEEEcCCCeEEEEEEEeCCE-----EecCCccchHHHHHHHHHHHHHHHhccc
Confidence 999999999999999987543 4567899999999999999987652 2345678999999999999998765321
Q ss_pred cCCHHHHHHHHHHHHHHHHHcccccc-----eEEEEEe---cCCceEEEEeCHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q psy15216 874 KLSYKDVNILMIKSREIKELLSYQSS-----VKLNVKL---SDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANL 945 (2602)
Q Consensus 874 ~~~~~~~~~l~~~~e~~K~~LS~~~~-----~~~~i~~---~~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~a~~ 945 (2602)
. . +..+|++|+.++.... ..+.+.. ..+.....+|++++|.+++.+.++++.+.+.+.++.+..
T Consensus 201 ~-~-------~~~ae~lK~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~~i~~~l~~~~~ 272 (333)
T TIGR00904 201 I-G-------EQTAERIKIEIGSAYPLNDEPRKMEVRGRDLVTGLPRTIEITSVEVREALQEPVNQIVEAVKRTLEKTPP 272 (333)
T ss_pred C-C-------HHHHHHHHHHHhccccccccccceeecCccccCCCCeEEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 1 1 3579999999976422 1222211 122334578999999999999999999999999999864
Q ss_pred Cc-ccc-c-eEEEecCccchHHHHHHHHhhccCcccCcCCcchHhHHHHHHHhH
Q psy15216 946 TI-KDI-N-NVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQAN 996 (2602)
Q Consensus 946 ~~-~~i-~-~V~LvGG~sr~P~v~~~l~~~f~~~~~~~~~p~~aVa~GAa~~a~ 996 (2602)
.. .++ + .|+|+||+|++|.++++|++.|+.++....||+++||.||++++.
T Consensus 273 ~~~~~l~~~~IvL~GGss~ipgl~e~l~~~~~~~v~~~~~P~~~va~Ga~~~~~ 326 (333)
T TIGR00904 273 ELAADIVERGIVLTGGGALLRNLDKLLSKETGLPVIVADDPLLCVAKGTGKALE 326 (333)
T ss_pred hhhhhhccCCEEEECcccchhhHHHHHHHHHCCCceecCChHHHHHHHHHHHHh
Confidence 42 234 3 699999999999999999999999999999999999999999874
|
A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK. |
| >TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.5e-30 Score=333.48 Aligned_cols=353 Identities=32% Similarity=0.525 Sum_probs=285.3
Q ss_pred eeccCCC--CCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCC-CcEEEeCCHHHHHHHHHH
Q psy15216 1396 IVFKDAT--TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADP-REIIWTSGATESNNLAIK 1472 (2602)
Q Consensus 1396 v~L~~~~--~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~-~~iv~t~gaT~al~~al~ 1472 (2602)
+|||++. .+.|+.+.+++.++++...++++.+.|...........++|+.+++++|+++ ++|++|+|+|+++++++.
T Consensus 1 ~yld~a~~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~al~~~~~ 80 (376)
T TIGR01977 1 IYFDNAATTYPKPDEVYEAMADFYKNYGGSPGRGRYRLALRASREVEETRQLLAKLFNAPSSAHVVFTNNATTALNIALK 80 (376)
T ss_pred CCccCcccCCCCCHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHH
Confidence 4677544 3677899999999988755566554444444556788999999999999854 489999999999999999
Q ss_pred hhhhhhccCCCEEEEcCCCCcchHHHHHHH-HhCCcEEEEeccCCCCCcChhHHHhhccCCceEEEEeccccccccccCh
Q psy15216 1473 GAAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPI 1551 (2602)
Q Consensus 1473 ~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~-~~~G~~v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l 1551 (2602)
++. ++||+|+++.++|+++...+..+ +..|.+++.++.++++.+|+++++++++++|+++++++++||||.++|+
T Consensus 81 ~~~----~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~~v~~~~~~n~tG~~~~~ 156 (376)
T TIGR01977 81 GLL----KEGDHVITTPMEHNSVARPLECLKEQIGVEITIVKCDNEGLISPERIKRAIKTNTKLIVVSHASNVTGTILPI 156 (376)
T ss_pred hcc----CCCCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecCCCCCcCHHHHHHhcCCCCeEEEEECCCCCccccCCH
Confidence 875 89999999999999987776554 4459999999988888899999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCEEEEecccccCcccccCCCCCccEEEEcccc-ccCCCceEEEEEecCCCCccccccccCCc-------
Q psy15216 1552 LEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGH------- 1623 (2602)
Q Consensus 1552 ~~I~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K-~~gp~G~G~l~~~~~~~~~l~~~~~g~~~------- 1623 (2602)
++|.++|+++|+++++|++|++|..++++..+++|++++|+|| ++||.|+|+++++++. .+.+...++..
T Consensus 157 ~~i~~l~~~~~~~livD~a~~~g~~~~~~~~~~~D~~~~s~~K~l~~p~g~g~l~~~~~~--~~~~~~~~~~~~~~~~~~ 234 (376)
T TIGR01977 157 EEIGELAQENGIFFILDAAQTAGVIPIDMTELAIDMLAFTGHKGLLGPQGTGGLYIREGI--KLKPLKSGGTGSHSALID 234 (376)
T ss_pred HHHHHHHHHcCCEEEEEhhhccCccCCCchhcCCCEEEecccccccCCCCceEEEEcCCc--CcCceecCCCcccccccc
Confidence 9999999999999999999999999999998999999999999 5689999999998865 23333332211
Q ss_pred -----cccCCCCCcchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCC-CCCceEEEEEec
Q psy15216 1624 -----EYGLRSGTLATHQIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNN-RIPHNLNISFNF 1696 (2602)
Q Consensus 1624 -----~~~~~~gt~~~~~~~al~~aL~~~-~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~-~~~~~~~~~~~~ 1696 (2602)
..+++.||++.+.++++.+++++. ..+.+.+.++.+.+++++++.|.+ .+++.+..+.+. ....+..+.+++
T Consensus 235 ~~~~~~~r~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~l~~~~~~~l~~-~~~~~~~~~~~~~~~~~~v~~~~~~ 313 (376)
T TIGR01977 235 QPSELPDRFESGTLNTPGIAGLNAGIKFIEKIGIANIAKKECMLTEKLLNGLRE-INKVKIYGPADPANRVGVVSFTVEG 313 (376)
T ss_pred ccccchhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc-CCCeEEeCCCCccccCCeEEEEECC
Confidence 235678899999999999999954 456888999999999999999987 788988865322 223455556666
Q ss_pred CCcHHHHHhc--C-CEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1697 IEGESLLMAI--K-DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1697 ~~~~~~~~~L--~-gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
.+..++...| + ||.++.|.+|... ....+|.. ..+.||+|++.++|.+|+++++++|++
T Consensus 314 ~~~~~~~~~L~~~~gi~v~~g~~~~~~------~~~~~g~~---~~~~iRis~~~~~t~~dv~~~~~~l~~ 375 (376)
T TIGR01977 314 IDSEEVADILDEKFDIATRTGLHCAPL------AHKTIGTF---ATGTIRLSLGYFNTEEEIEKLLEALSE 375 (376)
T ss_pred CCHHHHHHHHhccCCEEEEcccccchH------HHHHhCCC---CCCeEEEecCCCCCHHHHHHHHHHHhh
Confidence 6667777777 4 9999998877642 12233322 247899999999999999999999975
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown. |
| >TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.4e-30 Score=336.60 Aligned_cols=356 Identities=21% Similarity=0.282 Sum_probs=286.4
Q ss_pred eeeccC-CCCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHh
Q psy15216 1395 NIVFKD-ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKG 1473 (2602)
Q Consensus 1395 ~v~L~~-~~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~ 1473 (2602)
.+||+. +.+++|+.+++++.+.+.....+++. .|.......+.++++|+.+++++|+++++|++++|+|++++.++.+
T Consensus 18 ~~yl~~~~~~~~p~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~ia~~~~~~~~~v~~~~~~t~~l~~~~~~ 96 (397)
T TIGR01976 18 RVFFDNPAGTQIPQSVADAVSAALTRSNANRGG-AYESSRRADQVVDDAREAVADLLNADPPEVVFGANATSLTFLLSRA 96 (397)
T ss_pred eEEecCCccCCCCHHHHHHHHHHHHhcCCCCCC-CchHHHHHHHHHHHHHHHHHHHcCCCCCeEEEeCCHHHHHHHHHHH
Confidence 478875 45678899999999998765555553 3444555667889999999999999877899999999999988877
Q ss_pred hhhhhccCCCEEEEcCCCCcchHHHH-HHHHhCCcEEEEeccCC-CCCcChhHHHhhccCCceEEEEeccccccccccCh
Q psy15216 1474 AAHFYKKRGKHIITVQTEHKSVLDSI-RKLENDGFRVTYLKPKN-NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPI 1551 (2602)
Q Consensus 1474 l~~~~~~~gd~Vlv~~~~~~s~~~~~-~~~~~~G~~v~~v~~~~-~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l 1551 (2602)
+. ..+++||+|++++++|+++...+ ..++..|++++.++.++ ++.+|+++++++++++|++|++++++||||.+.|+
T Consensus 97 ~~-~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~i~~~~~lv~i~~~~n~tG~~~~~ 175 (397)
T TIGR01976 97 IS-RRWGPGDEVIVTRLDHEANISPWLQAAERAGAKVKWARVDEATGELHPDDLASLLSPRTRLVAVTAASNTLGSIVDL 175 (397)
T ss_pred HH-hcCCCCCEEEEcCCchHhHHHHHHHHHHhcCCEEEEEeccccCCCcCHHHHHHhcCCCceEEEEeCCCCCCCccCCH
Confidence 63 12479999999999999987766 44466799999999876 67899999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCEEEEecccccCcccccCCCCCccEEEEccccccCCCceEEEEEecCCCCccccccccC---CccccCC
Q psy15216 1552 LEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGG---GHEYGLR 1628 (2602)
Q Consensus 1552 ~~I~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K~~gp~G~G~l~~~~~~~~~l~~~~~g~---~~~~~~~ 1628 (2602)
++|.++|++||+++++|++|+.|..++++.++++|++++|+||++||+ +|++++++++++.+.+....+ ....+++
T Consensus 176 ~~i~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~-~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~ 254 (397)
T TIGR01976 176 AAITELVHAAGALVVVDAVHYAPHGLIDVQATGADFLTCSAYKFFGPH-MGILWGRPELLMNLPPYKLTFSYDTGPERFE 254 (397)
T ss_pred HHHHHHHHHcCCEEEEehhhhccccCCCHHHcCCCEEEEechhhcCCc-eEEEEEcHHHHhhCCCccccCccCCCcchhc
Confidence 999999999999999999999998888888889999999999998986 899999988777766543222 2245688
Q ss_pred CCCcchhHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCC-CCCCceEEE
Q psy15216 1629 SGTLATHQIVGMGEAFRLARI---------------EMKEELKRILFLQKRLYNGLMESIEEIYINGDMN-NRIPHNLNI 1692 (2602)
Q Consensus 1629 ~gt~~~~~~~al~~aL~~~~~---------------~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~-~~~~~~~~~ 1692 (2602)
.||+++..++++.+|++++.. .++.+.++..++++++++.|.+ ++++.+.++.. .....+..+
T Consensus 255 ~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~-~~~~~~~~~~~~~~~~~~~~~ 333 (397)
T TIGR01976 255 LGTPQYELLAGVVAAVDYLAGLGESANGSRRERLVASFQAIDAYENRLAEYLLVGLSD-LPGVTLYGVARLAARVPTVSF 333 (397)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhc-CCCEEEeCCCCccCCCceEEE
Confidence 899999999999999986542 2577788889999999999987 67788876522 112234445
Q ss_pred EEecCCcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHH
Q psy15216 1693 SFNFIEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLL 1762 (2602)
Q Consensus 1693 ~~~~~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L 1762 (2602)
.+++.+..++...| +||.++.+..|..+ .+..++... ..+++|+|+++++|.+|+++++++|
T Consensus 334 ~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~------~~~~~~~~~--~~~~iRis~~~~~t~~di~~l~~~l 397 (397)
T TIGR01976 334 TVHGLPPQRVVRRLADQGIDAWAGHFYAVR------LLRRLGLND--EGGVVRVGLAHYNTAEEVDRLLEAL 397 (397)
T ss_pred EeCCcCHHHHHHHHHHCCeEEEeCccchHH------HHHHhCCCC--CCCeEEEEeeccCCHHHHHHHHHhC
Confidence 55545566777777 89999988877532 345555432 1368999999999999999999875
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase. |
| >PRK13927 rod shape-determining protein MreB; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.2e-30 Score=323.60 Aligned_cols=306 Identities=23% Similarity=0.310 Sum_probs=230.1
Q ss_pred EEEEEcCcccEEEEEEECCeEEEEeCCCCCccccEEEEEecC-Cc-EEecHHHHhhhccCCCCchhhhhhhcCCCCCCCC
Q psy15216 2035 SIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPD-GK-IYVGKKAKITQNIDPKNTISSIKRFIARDLKNIN 2112 (2602)
Q Consensus 2035 vvGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~~-~~-~~vG~~A~~~~~~~p~~~~~~~K~~lg~~~~~~~ 2112 (2602)
.|||||||++|+++.. |+..++ .+||+|++.++ ++ .++|++|+.+..++|.++... +-+ .
T Consensus 7 ~igIDlGt~~~~i~~~--~~~~~~-------~~ps~v~~~~~~~~~~~vG~~a~~~~~~~~~~~~~~--~pi----~--- 68 (334)
T PRK13927 7 DLGIDLGTANTLVYVK--GKGIVL-------NEPSVVAIRTDTKKVLAVGEEAKQMLGRTPGNIVAI--RPM----K--- 68 (334)
T ss_pred eeEEEcCcceEEEEEC--CCcEEE-------ecCCEEEEECCCCeEEEecHHHHHHhhcCCCCEEEE--ecC----C---
Confidence 4999999999998543 333333 27999999765 33 589999998877777654311 111 0
Q ss_pred CCCCCeeeecCCCceEEEecCceeCHHHHHHHHHHHHHHHHHHhhccccceEEEeeCCCCCHHHHHHHHHHHHHcCCcee
Q psy15216 2113 TNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVL 2192 (2602)
Q Consensus 2113 ~~~~~~~~~~~~g~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~l~~Aa~~AGl~~~ 2192 (2602)
+| ...--+.+..+++++......... ....+|+|||++|++.||+++++|++.||++.+
T Consensus 69 -----------~G---------~i~d~~~~~~ll~~~~~~~~~~~~-~~~~~vi~vP~~~~~~~r~~~~~a~~~ag~~~~ 127 (334)
T PRK13927 69 -----------DG---------VIADFDVTEKMLKYFIKKVHKNFR-PSPRVVICVPSGITEVERRAVRESALGAGAREV 127 (334)
T ss_pred -----------CC---------eecCHHHHHHHHHHHHHHHhhccC-CCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCee
Confidence 01 111113344555555544333321 123799999999999999999999999999999
Q ss_pred EeechhHHHHHHhhhccCCCCceEEEEEeCCceEEEEEEEEeCCEEEEEEEecCCCCchhHHHHHHHHHHHHHHhhhcCC
Q psy15216 2193 RLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLS 2272 (2602)
Q Consensus 2193 ~li~EP~AAAl~y~~~~~~~~~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~~~~ 2272 (2602)
.+++||+|||++|+.... .+..++|||+||||||+++++.++. ...++..+||++||+.|.+++.+++.. ...
T Consensus 128 ~li~ep~aaa~~~g~~~~-~~~~~lvvDiGggttdvs~v~~~~~-----~~~~~~~lGG~~id~~l~~~l~~~~~~-~~~ 200 (334)
T PRK13927 128 YLIEEPMAAAIGAGLPVT-EPTGSMVVDIGGGTTEVAVISLGGI-----VYSKSVRVGGDKFDEAIINYVRRNYNL-LIG 200 (334)
T ss_pred ccCCChHHHHHHcCCccc-CCCeEEEEEeCCCeEEEEEEecCCe-----EeeCCcCChHHHHHHHHHHHHHHHhCc-CcC
Confidence 999999999999987543 3456899999999999999988652 234557899999999999999876311 111
Q ss_pred hhHHHHHHHHHHHHHHHhcccce----EEEEEE---ecCCceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc--
Q psy15216 2273 YKDVNILMIKSREIKELLSYQSS----VKLNVK---LSDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTI-- 2343 (2602)
Q Consensus 2273 ~~~~~~l~~~~e~~K~~ls~~~~----~~~~i~---~~~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~~~~~~-- 2343 (2602)
...+|++|+.++.... ..+.+. ...+....++|+|++|++++.+.++++.+.|.++|+++....
T Consensus 201 -------~~~ae~iK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~ 273 (334)
T PRK13927 201 -------ERTAERIKIEIGSAYPGDEVLEMEVRGRDLVTGLPKTITISSNEIREALQEPLSAIVEAVKVALEQTPPELAA 273 (334)
T ss_pred -------HHHHHHHHHHhhccCCCCCCceEEEeCcccCCCCCeEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCchhhh
Confidence 2468999999875432 233332 223445688999999999999999999999999999986432
Q ss_pred cccc-eEEEEeCccchHHHHHHHHhhcCCcccCCCCccchhhhHHHHHhHH
Q psy15216 2344 KDIN-NVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANF 2393 (2602)
Q Consensus 2344 ~~i~-~V~LvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~aVa~GAa~~a~~ 2393 (2602)
..++ .|+|+||+|++|.++++|++.|+.++....||+++||+||++++..
T Consensus 274 ~~~~~~IvL~GG~s~ipgl~~~l~~~~~~~v~~~~~P~~ava~Ga~~~~~~ 324 (334)
T PRK13927 274 DIVDRGIVLTGGGALLRGLDKLLSEETGLPVHVAEDPLTCVARGTGKALEN 324 (334)
T ss_pred hhhcCCEEEECchhhhhHHHHHHHHHHCCCcEecCCHHHHHHHHHHHHHhh
Confidence 2234 5999999999999999999999999999999999999999998854
|
|
| >TIGR00904 mreB cell shape determining protein, MreB/Mrl family | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-29 Score=320.23 Aligned_cols=305 Identities=25% Similarity=0.308 Sum_probs=228.2
Q ss_pred EEEEcCcccEEEEEEECCeEEEEeCCCCCccccEEEEEecC----Cc--EEecHHHHhhhccCCCCchhhhhhhcCCCCC
Q psy15216 2036 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPD----GK--IYVGKKAKITQNIDPKNTISSIKRFIARDLK 2109 (2602)
Q Consensus 2036 vGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~~----~~--~~vG~~A~~~~~~~p~~~~~~~K~~lg~~~~ 2109 (2602)
+|||||||||.+++...+ .++ ..||+|+|.++ .. ++||++|+....+.|.++. +++-+..
T Consensus 5 ~giDlGt~~s~i~~~~~~--~~~-------~~psvv~~~~~~~~~~~~~~~vG~~A~~~~~~~~~~~~--~~~pi~~--- 70 (333)
T TIGR00904 5 IGIDLGTANTLVYVKGRG--IVL-------NEPSVVAIRTDRDAKTKSILAVGHEAKEMLGKTPGNIV--AIRPMKD--- 70 (333)
T ss_pred eEEecCcceEEEEECCCC--EEE-------ecCCEEEEecCCCCCCCeEEEEhHHHHHhhhcCCCCEE--EEecCCC---
Confidence 999999999999875333 333 37999999754 22 6799999887766666543 1222211
Q ss_pred CCCCCCCCeeeecCCCceEEEecCceeCHHHHHHHHHHHHHHHHHHhhccccceEEEeeCCCCCHHHHHHHHHHHHHcCC
Q psy15216 2110 NINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGL 2189 (2602)
Q Consensus 2110 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~l~~Aa~~AGl 2189 (2602)
| ....-+.+..+++++........+.....+|+|||++|+..||+++++|++.||+
T Consensus 71 ---------------G---------~i~d~~~~~~~~~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~~~~~~~~ag~ 126 (333)
T TIGR00904 71 ---------------G---------VIADFEVTEKMIKYFIKQVHSRKSFFKPRIVICVPSGITPVERRAVKESALSAGA 126 (333)
T ss_pred ---------------C---------EEEcHHHHHHHHHHHHHHHhcccccCCCcEEEEeCCCCCHHHHHHHHHHHHHcCC
Confidence 1 1111233344455554443322222223799999999999999999999999999
Q ss_pred ceeEeechhHHHHHHhhhccCCCCceEEEEEeCCceEEEEEEEEeCCEEEEEEEecCCCCchhHHHHHHHHHHHHHHhhh
Q psy15216 2190 NVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLK 2269 (2602)
Q Consensus 2190 ~~~~li~EP~AAAl~y~~~~~~~~~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~ 2269 (2602)
+.+.+++||+|||++|+.... .+..++|+|+||||||+++++..+. ...++..+||++||+.|.+++.+++ ..
T Consensus 127 ~~~~li~ep~aaa~~~g~~~~-~~~~~lVvDiG~gttdvs~v~~~~~-----~~~~~~~lGG~did~~l~~~l~~~~-~~ 199 (333)
T TIGR00904 127 REVYLIEEPMAAAIGAGLPVE-EPTGSMVVDIGGGTTEVAVISLGGI-----VVSRSIRVGGDEFDEAIINYIRRTY-NL 199 (333)
T ss_pred CeEEEecCHHHHHHhcCCccc-CCceEEEEEcCCCeEEEEEEEeCCE-----EecCCccchHHHHHHHHHHHHHHHh-cc
Confidence 999999999999999986543 3457899999999999999988652 2345678999999999999998653 11
Q ss_pred cCChhHHHHHHHHHHHHHHHhcccce-----EEEEEEe---cCCceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q psy15216 2270 KLSYKDVNILMIKSREIKELLSYQSS-----VKLNVKL---SDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANL 2341 (2602)
Q Consensus 2270 ~~~~~~~~~l~~~~e~~K~~ls~~~~-----~~~~i~~---~~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~~~~ 2341 (2602)
... +..+|++|+.++.... ..+.+.. ..+....+++++++|.+++.+.++++.+.+.+.++.+..
T Consensus 200 ~~~-------~~~ae~lK~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~~i~~~l~~~~~ 272 (333)
T TIGR00904 200 LIG-------EQTAERIKIEIGSAYPLNDEPRKMEVRGRDLVTGLPRTIEITSVEVREALQEPVNQIVEAVKRTLEKTPP 272 (333)
T ss_pred cCC-------HHHHHHHHHHHhccccccccccceeecCccccCCCCeEEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 111 3578999999976322 1222211 112234578999999999999999999999999999875
Q ss_pred Cc-ccc-c-eEEEEeCccchHHHHHHHHhhcCCcccCCCCccchhhhHHHHHhH
Q psy15216 2342 TI-KDI-N-NVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQAN 2392 (2602)
Q Consensus 2342 ~~-~~i-~-~V~LvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~aVa~GAa~~a~ 2392 (2602)
.. .++ + .|+|+||+|++|.++++|++.|+.++....||+++||.||++++.
T Consensus 273 ~~~~~l~~~~IvL~GGss~ipgl~e~l~~~~~~~v~~~~~P~~~va~Ga~~~~~ 326 (333)
T TIGR00904 273 ELAADIVERGIVLTGGGALLRNLDKLLSKETGLPVIVADDPLLCVAKGTGKALE 326 (333)
T ss_pred hhhhhhccCCEEEECcccchhhHHHHHHHHHCCCceecCChHHHHHHHHHHHHh
Confidence 42 244 3 699999999999999999999999999999999999999999874
|
A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK. |
| >PRK13930 rod shape-determining protein MreB; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-29 Score=321.30 Aligned_cols=306 Identities=23% Similarity=0.287 Sum_probs=235.9
Q ss_pred EEEEcCcccEEEEEEECCeeEEEeCCCCCccccEEEEEecC-C-cEEEcHHHHhhhccCCCCchhhhhhhhCCCCCCCCC
Q psy15216 640 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPD-G-KIYVGKKAKITQNIDPKNTISSIKRFIARDLKNINT 717 (2602)
Q Consensus 640 vGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~v~~~~~-~-~~~vG~~A~~~~~~~p~~~~~~~K~~lg~~~~~~~~ 717 (2602)
+||||||++|+++++.++ .++ .+||+|+|.++ + .+++|.+|++...+.|.+.- +++
T Consensus 11 vgiDlGt~~t~i~~~~~~--~~~-------~~ps~v~~~~~~~~~~~vG~~A~~~~~~~~~~~~--~~~----------- 68 (335)
T PRK13930 11 IGIDLGTANTLVYVKGKG--IVL-------NEPSVVAIDTKTGKVLAVGEEAKEMLGRTPGNIE--AIR----------- 68 (335)
T ss_pred eEEEcCCCcEEEEECCCC--EEE-------ecCCEEEEECCCCeEEEEcHHHHHhhhcCCCCeE--Eee-----------
Confidence 999999999999987332 233 25999999753 2 36999999887766665431 111
Q ss_pred CCCCeeeecCCCceEEEEeCceeCHHHHHHHHHHHHHHHHHHhhcCccceEEEEEcCCCCHHHHHHHHHHHHHcCCceEE
Q psy15216 718 NSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLR 797 (2602)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~~~~Aa~~AGl~~~~ 797 (2602)
|+ ..+.+...+.+..+++++.+.+..........+|||||++|+..||+++++|++.+|++.+.
T Consensus 69 ---pi-------------~~G~i~d~~~~e~ll~~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~~~e~~g~~~~~ 132 (335)
T PRK13930 69 ---PL-------------KDGVIADFEATEAMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVREAAEHAGAREVY 132 (335)
T ss_pred ---cC-------------CCCeEcCHHHHHHHHHHHHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHHHHHHcCCCeEE
Confidence 11 01122234557777888876665544444568999999999999999999999999999999
Q ss_pred EechhHHHHHHhhhccCcccceEEEEEeCCceEEEEEEEEECCEEEEEEEecCCCCcchHHHHHHHHHHHHHHhhccCCH
Q psy15216 798 LLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLSY 877 (2602)
Q Consensus 798 li~EPtAAAl~y~~~~~~~~~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~~~~~ 877 (2602)
+++||+|||++|+.... ....++|||+||||||++++.... ++ ..+...+||.+||+.|.+++.+++.... +
T Consensus 133 lv~ep~AAa~a~g~~~~-~~~~~lVvDiG~gttdvs~v~~g~----~~-~~~~~~lGG~~id~~l~~~l~~~~~~~~-~- 204 (335)
T PRK13930 133 LIEEPMAAAIGAGLPVT-EPVGNMVVDIGGGTTEVAVISLGG----IV-YSESIRVAGDEMDEAIVQYVRRKYNLLI-G- 204 (335)
T ss_pred ecccHHHHHHhcCCCcC-CCCceEEEEeCCCeEEEEEEEeCC----EE-eecCcCchhHHHHHHHHHHHHHHhCCCC-C-
Confidence 99999999999987543 344679999999999999998654 22 2456899999999999999988753221 1
Q ss_pred HHHHHHHHHHHHHHHHcccccc----eEEEEE---ecCCceEEEEeCHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--cc
Q psy15216 878 KDVNILMIKSREIKELLSYQSS----VKLNVK---LSDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLT--IK 948 (2602)
Q Consensus 878 ~~~~~l~~~~e~~K~~LS~~~~----~~~~i~---~~~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~a~~~--~~ 948 (2602)
...+|++|+.++.... ..+.+. ...+....++|++++|++++.+.++++.+.+.++++++... .+
T Consensus 205 ------~~~ae~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~ 278 (335)
T PRK13930 205 ------ERTAEEIKIEIGSAYPLDEEESMEVRGRDLVTGLPKTIEISSEEVREALAEPLQQIVEAVKSVLEKTPPELAAD 278 (335)
T ss_pred ------HHHHHHHHHHhhcCcCCCCCceEEEECccCCCCCCeeEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhH
Confidence 2578999999976432 223332 12344457899999999999999999999999999987533 23
Q ss_pred ccce-EEEecCccchHHHHHHHHhhccCcccCcCCcchHhHHHHHHHhHH
Q psy15216 949 DINN-VILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANF 997 (2602)
Q Consensus 949 ~i~~-V~LvGG~sr~P~v~~~l~~~f~~~~~~~~~p~~aVa~GAa~~a~~ 997 (2602)
.++. |+|+||+|++|.++++|++.|+.++....+|+++||+||++.+..
T Consensus 279 ~~~~~IvL~GG~s~ipg~~~~l~~~~~~~v~~~~~p~~ava~Ga~~~~~~ 328 (335)
T PRK13930 279 IIDRGIVLTGGGALLRGLDKLLSEETGLPVHIAEDPLTCVARGTGKALEN 328 (335)
T ss_pred HHhCCEEEECchhcchhHHHHHHHHHCCCceecCCHHHHHHHHHHHHHhC
Confidence 3464 999999999999999999999998888889999999999998853
|
|
| >TIGR01814 kynureninase kynureninase | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-29 Score=327.97 Aligned_cols=336 Identities=15% Similarity=0.189 Sum_probs=262.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhhcCCCCCCCcchh-hhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcc
Q psy15216 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYG-WTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAA 79 (2602)
Q Consensus 1 Ld~a~~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~-~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~ 79 (2602)
||+++.+|+|+.+.+++.+++.....++.. .+..+ ..+....++.++ + +++|+++++|+|++|+|++++.++.++.
T Consensus 31 ld~~a~g~~p~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~-~l~g~~~~~v~~~~~~t~~l~~~~~~~~ 107 (406)
T TIGR01814 31 LDGNSLGLMPKAARNALKEELDKWAKIAIR-GHNTGKAPWFTLDESLLK-L-RLVGAKEDEVVVMNTLTINLHLLLASFY 107 (406)
T ss_pred ecCCCcCcCcHHHHHHHHHHHHHHHHhhhc-cCccCCCChhhhhhhhcc-c-cccCCCCCcEEEeCCchHHHHHHHHHhc
Confidence 688888899999999999988654333322 12111 122233344444 5 8999999999999999999999999874
Q ss_pred cccccC---CCEEEEcCCCCcccHHHHHH-HHhCCcEE----EEeccCCCCccChHHHHhhc---cCCceEEEEecccCc
Q psy15216 80 HFYKKR---GKHIITVQTEHKSVLDSIRK-LENDGFRV----TYLKPKNNGLITLSQLEEKI---CSDTILVSVMLVNNE 148 (2602)
Q Consensus 80 ~~~~~~---gd~Vlv~~~~~~s~~~~~~~-~~~~G~~v----~~v~~~~~~~ld~e~l~~~i---~~~tklv~i~~~~np 148 (2602)
++ +++|++++.+|++...+|.. +++.|+++ +.++.++++.+|++++++.+ +++|++|+++|++|.
T Consensus 108 ----~~~~~~~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~t~lv~~~~v~~~ 183 (406)
T TIGR01814 108 ----KPTPKRYKILLEAKAFPSDHYAIESQLQLHGLTVEESMVQIEPREEETLRLEDILDTIEKNGDDIAVILLSGVQYY 183 (406)
T ss_pred ----CCcCCccEEEecCCCCChHHHHHHHHHHhcCCCcccceEEeccCCCCccCHHHHHHHHHhcCCCeEEEEEeccccc
Confidence 34 34799999999998887763 46678887 56666667788999998887 478999999999999
Q ss_pred ccccccHHHHHHHHHhcCCEEEEecccccccccccCCCCCccEEEeccccc-cCCCCcEEEEEecCCCCcccceecCCCc
Q psy15216 149 IGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKI-YGPKGIGALYIRRNPRTRIEAQIHGGGH 227 (2602)
Q Consensus 149 TG~~~~l~~I~~la~~~g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K~-~Gp~G~G~l~~~~~~~~~l~~~~~g~~~ 227 (2602)
||.+.|+++|+++||++|+++++|++|++|..++++.++++|++++|+||+ +||+| |+++++++....+.|...||..
T Consensus 184 tG~~~~~~~i~~~~~~~g~~~~vD~aq~~G~~~id~~~~gvD~~~~s~hK~l~g~pG-~~l~v~~~~~~~~~p~~~g~~~ 262 (406)
T TIGR01814 184 TGQLFDMAAITRAAHAKGALVGFDLAHAVGNVPLDLHDWGVDFACWCTYKYLNAGPG-AGAFVHEKHAHTERPRLAGWWG 262 (406)
T ss_pred cceecCHHHHHHHHHHcCCEEEEEcccccCCcccccccCCCCEEEEcCccccCCCCC-eEEEEehhhhhhcCCCCCcccC
Confidence 999999999999999999999999999999999999999999999999994 56778 7788776655455565444321
Q ss_pred ----------------cccccccCcchhHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHhhc---cCceEEeCCCC
Q psy15216 228 ----------------EYGLRSGTLATHQIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMES---IEEIYINGDMN 287 (2602)
Q Consensus 228 ----------------~~~~~~gt~~~~~~~al~~al~~~-~~~~~~~~~~~~~l~~~l~~~L~~~---~~g~~l~~~~~ 287 (2602)
+.+++.||+++.+++++.+|+++. ..+++++.++...+.+++++.|.+. .++++++++.+
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~i~~~~~ 342 (406)
T TIGR01814 263 HARPTRFKMDNTLGLIPCGFRISNPPILSVAALRGSLDIFDQAGMEALRKKSLLLTDYLEELIKARCGGPPVLTIITPRD 342 (406)
T ss_pred CCCccccccccccCCCccceeeCCccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEeCCCC
Confidence 345678999999999999999966 4568999999999999999999772 14688887643
Q ss_pred C-CCCceEEEEEcccChhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEec-CCCCCHHHHHHHH
Q psy15216 288 N-RIPHNLNISFNFIEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTI-GRFTTEKEIDFTI 363 (2602)
Q Consensus 288 ~-~~~~~~~~~~~~~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~-~~~~t~edid~li 363 (2602)
. ..+.++.+.++ .+..++...| +||.+... ..+.||+|+ |+|||.+||++++
T Consensus 343 ~~~r~~~v~~~~~-~~~~~~~~~L~~~gi~v~~~-----------------------~~~~iRiS~~~~~nt~~did~l~ 398 (406)
T TIGR01814 343 HAQRGCQLSLTHP-VPGKAVFQALIKRGVIGDKR-----------------------EPSVIRVAPVPLYNTFVDVYDAV 398 (406)
T ss_pred hhhcCCeEEEEec-CCHHHHHHHHHHCCEEEecc-----------------------CCCeEEEechhccCCHHHHHHHH
Confidence 2 12345666666 5677777777 68876411 126899999 6899999999999
Q ss_pred HHHHh
Q psy15216 364 KLLKM 368 (2602)
Q Consensus 364 ~~L~~ 368 (2602)
++|++
T Consensus 399 ~~l~~ 403 (406)
T TIGR01814 399 NVLEE 403 (406)
T ss_pred HHHHH
Confidence 99985
|
This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen. |
| >KOG3361|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-31 Score=256.84 Aligned_cols=115 Identities=71% Similarity=1.105 Sum_probs=106.9
Q ss_pred hhhhHhhhhcccCCCCCCCCCCCCCcceeeeeCCCCcccEEEEEEEEcCCCceEeeeeeccccchhHhhHHHHHHHHcCC
Q psy15216 373 MSYSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKTYGCGSAIASSSLVTEWVKGK 452 (2602)
Q Consensus 373 ~~y~~~~~~hy~~p~n~g~~~~~~~~~~~~~~~~~~cgd~~~~~~~~~~~~~i~~~~~~~~gc~~~~a~~s~~~~~~~g~ 452 (2602)
.+|++.++|||.||||+|+|++.|.+||+|.+|.|.|||+|++|++||++|.|+|++|+|||||++|||+|++||||+||
T Consensus 27 rlYh~~VidHy~nPRNVGSldK~dpnVGtGlVGAPACGDVMkLqIkvd~~g~I~dakFKTFGCGSAIASSS~aTewvkgk 106 (157)
T KOG3361|consen 27 RLYHENVIDHYENPRNVGSLDKNDPNVGTGLVGAPACGDVMKLQIKVDDSGVIEDAKFKTFGCGSAIASSSLATEWVKGK 106 (157)
T ss_pred hhcchhhhhcccCccccCccCCCCCCcccccccCccccceeeEEEEECCCCcEEEeeeeecccchHhhhhHHHHHHHccc
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Chhhhhhccccchhhhhc-----------cHHHHH-HHHHHHHhcCC
Q psy15216 453 TLDEAMSIKNTDIAEELV-----------TKKAAK-YINKYIQKRGK 487 (2602)
Q Consensus 453 ~~~e~~~i~~~~i~~~l~-----------t~~A~~-~~~~~~~~~~~ 487 (2602)
|+||+++|.|++|+..|. -|+|++ .|+.+..++.+
T Consensus 107 t~dea~kIkNteIAKeL~LPPVKLHCSMLAEDAIKaAikdyk~Kq~~ 153 (157)
T KOG3361|consen 107 TLDEALKIKNTEIAKELSLPPVKLHCSMLAEDAIKAAIKDYKEKQNK 153 (157)
T ss_pred cHHHHHhcccHHHHHhccCCchhhhhHHHHHHHHHHHHHHHHHhccC
Confidence 999999999999999863 367775 77777776653
|
|
| >KOG3361|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.7e-31 Score=253.18 Aligned_cols=115 Identities=71% Similarity=1.114 Sum_probs=106.2
Q ss_pred hhhhhhhhhhhcCCCCcCcccCCCCcceeeeecCCCCccEEEEEEEEcCCCcEEeeeeeccccchhHhhHHHHHHHHcCC
Q psy15216 1769 MSYSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKTYGCGSAIASSSLVTEWVKGK 1848 (2602)
Q Consensus 1769 ~~y~~~i~dh~~~p~~~g~~~~~~~~~~~~~~~~~~cgd~~~~~~~~~~~~~i~~~~~~~~gc~~~~a~~s~~~~~~~g~ 1848 (2602)
.+|++.++|||.||||+|+|++.|+.||+|.+|.|.|||+|+|+++||++|+|+|+||+|||||++|||+|++|||++||
T Consensus 27 rlYh~~VidHy~nPRNVGSldK~dpnVGtGlVGAPACGDVMkLqIkvd~~g~I~dakFKTFGCGSAIASSS~aTewvkgk 106 (157)
T KOG3361|consen 27 RLYHENVIDHYENPRNVGSLDKNDPNVGTGLVGAPACGDVMKLQIKVDDSGVIEDAKFKTFGCGSAIASSSLATEWVKGK 106 (157)
T ss_pred hhcchhhhhcccCccccCccCCCCCCcccccccCccccceeeEEEEECCCCcEEEeeeeecccchHhhhhHHHHHHHccc
Confidence 56999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Chhhhhcccccchhhhh-----------ccHHHHH-HHHHHHHhcCC
Q psy15216 1849 TLDEAMSIKNTDIAEEL-----------VTKKAAK-YINKYIQKRGK 1883 (2602)
Q Consensus 1849 ~~~~~~~i~~~~i~~~l-----------~t~~A~~-~i~~~~~~~~~ 1883 (2602)
|+||+++|.|++|+..| |-|.|++ +|+.+..++..
T Consensus 107 t~dea~kIkNteIAKeL~LPPVKLHCSMLAEDAIKaAikdyk~Kq~~ 153 (157)
T KOG3361|consen 107 TLDEALKIKNTEIAKELSLPPVKLHCSMLAEDAIKAAIKDYKEKQNK 153 (157)
T ss_pred cHHHHHhcccHHHHHhccCCchhhhhHHHHHHHHHHHHHHHHHhccC
Confidence 99999999999999874 3366664 77887766653
|
|
| >PRK13930 rod shape-determining protein MreB; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-28 Score=312.84 Aligned_cols=306 Identities=23% Similarity=0.291 Sum_probs=233.3
Q ss_pred EEEEcCcccEEEEEEECCeEEEEeCCCCCccccEEEEEecC-C-cEEecHHHHhhhccCCCCchhhhhhhcCCCCCCCCC
Q psy15216 2036 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPD-G-KIYVGKKAKITQNIDPKNTISSIKRFIARDLKNINT 2113 (2602)
Q Consensus 2036 vGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~~-~-~~~vG~~A~~~~~~~p~~~~~~~K~~lg~~~~~~~~ 2113 (2602)
+||||||++|+++++.++ .++ .+||+|++.++ + .+++|.+|+....++|.+.. +++
T Consensus 11 vgiDlGt~~t~i~~~~~~--~~~-------~~ps~v~~~~~~~~~~~vG~~A~~~~~~~~~~~~--~~~----------- 68 (335)
T PRK13930 11 IGIDLGTANTLVYVKGKG--IVL-------NEPSVVAIDTKTGKVLAVGEEAKEMLGRTPGNIE--AIR----------- 68 (335)
T ss_pred eEEEcCCCcEEEEECCCC--EEE-------ecCCEEEEECCCCeEEEEcHHHHHhhhcCCCCeE--Eee-----------
Confidence 999999999999886333 233 25999999753 3 36899999887766665432 111
Q ss_pred CCCCeeeecCCCceEEEecCceeCHHHHHHHHHHHHHHHHHHhhccccceEEEeeCCCCCHHHHHHHHHHHHHcCCceeE
Q psy15216 2114 NSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLR 2193 (2602)
Q Consensus 2114 ~~~~~~~~~~~g~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~l~~Aa~~AGl~~~~ 2193 (2602)
|+ .. +....-+.+..+++++.+.+..........+|+|+|++|+..+|+++.+|++.+|++.+.
T Consensus 69 ---pi----~~---------G~i~d~~~~e~ll~~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~~~e~~g~~~~~ 132 (335)
T PRK13930 69 ---PL----KD---------GVIADFEATEAMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVREAAEHAGAREVY 132 (335)
T ss_pred ---cC----CC---------CeEcCHHHHHHHHHHHHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHHHHHHcCCCeEE
Confidence 11 01 111223456777777776655543444568999999999999999999999999999999
Q ss_pred eechhHHHHHHhhhccCCCCceEEEEEeCCceEEEEEEEEeCCEEEEEEEecCCCCchhHHHHHHHHHHHHHHhhhcCCh
Q psy15216 2194 LLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLSY 2273 (2602)
Q Consensus 2194 li~EP~AAAl~y~~~~~~~~~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~~~~~ 2273 (2602)
+++||+|||++|+..... ....+|||+||||||++++.... ++ ..+...+||.+||+.|.+++.+++ .-...
T Consensus 133 lv~ep~AAa~a~g~~~~~-~~~~lVvDiG~gttdvs~v~~g~----~~-~~~~~~lGG~~id~~l~~~l~~~~-~~~~~- 204 (335)
T PRK13930 133 LIEEPMAAAIGAGLPVTE-PVGNMVVDIGGGTTEVAVISLGG----IV-YSESIRVAGDEMDEAIVQYVRRKY-NLLIG- 204 (335)
T ss_pred ecccHHHHHHhcCCCcCC-CCceEEEEeCCCeEEEEEEEeCC----EE-eecCcCchhHHHHHHHHHHHHHHh-CCCCC-
Confidence 999999999999775432 34578999999999999998764 22 345689999999999999998763 11111
Q ss_pred hHHHHHHHHHHHHHHHhcccce----EEEEEE---ecCCceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc--c
Q psy15216 2274 KDVNILMIKSREIKELLSYQSS----VKLNVK---LSDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTI--K 2344 (2602)
Q Consensus 2274 ~~~~~l~~~~e~~K~~ls~~~~----~~~~i~---~~~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~~~~~~--~ 2344 (2602)
...+|++|+.++.... ..+.+. ...+....++|++++|++++.+.++++.+.+.++++.+.... .
T Consensus 205 ------~~~ae~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~ 278 (335)
T PRK13930 205 ------ERTAEEIKIEIGSAYPLDEEESMEVRGRDLVTGLPKTIEISSEEVREALAEPLQQIVEAVKSVLEKTPPELAAD 278 (335)
T ss_pred ------HHHHHHHHHHhhcCcCCCCCceEEEECccCCCCCCeeEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhH
Confidence 2578999999976432 223332 123334578999999999999999999999999999875332 3
Q ss_pred ccce-EEEEeCccchHHHHHHHHhhcCCcccCCCCccchhhhHHHHHhHH
Q psy15216 2345 DINN-VILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANF 2393 (2602)
Q Consensus 2345 ~i~~-V~LvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~aVa~GAa~~a~~ 2393 (2602)
.++. |+|+||+|++|.++++|++.|+.++....+|+++||+||++.+..
T Consensus 279 ~~~~~IvL~GG~s~ipg~~~~l~~~~~~~v~~~~~p~~ava~Ga~~~~~~ 328 (335)
T PRK13930 279 IIDRGIVLTGGGALLRGLDKLLSEETGLPVHIAEDPLTCVARGTGKALEN 328 (335)
T ss_pred HHhCCEEEECchhcchhHHHHHHHHHCCCceecCCHHHHHHHHHHHHHhC
Confidence 3454 999999999999999999999999888899999999999998853
|
|
| >TIGR01814 kynureninase kynureninase | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-28 Score=319.44 Aligned_cols=340 Identities=15% Similarity=0.190 Sum_probs=261.3
Q ss_pred ceeeecc-CCCCCCCHHHHHHHHHHHhhccCCCCCccchhH-HHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHH
Q psy15216 1393 YTNIVFK-DATTPIDPRVVDKMIPYLRVQFGNPASRNHIYG-WTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLA 1470 (2602)
Q Consensus 1393 ~~~v~L~-~~~~~~~~~v~eal~~~l~~~~~np~~~~~~~~-~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~a 1470 (2602)
...+||+ ++.++.|..+.+++.++++....+++. .+..+ ..+....+++++ + +++|+++++|+||+|+|++++.+
T Consensus 26 ~~~iyld~~a~g~~p~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~-~l~g~~~~~v~~~~~~t~~l~~~ 102 (406)
T TIGR01814 26 NAVIYLDGNSLGLMPKAARNALKEELDKWAKIAIR-GHNTGKAPWFTLDESLLK-L-RLVGAKEDEVVVMNTLTINLHLL 102 (406)
T ss_pred CCcEEecCCCcCcCcHHHHHHHHHHHHHHHHhhhc-cCccCCCChhhhhhhhcc-c-cccCCCCCcEEEeCCchHHHHHH
Confidence 3468898 566678889999999888654333322 12111 112233344444 5 89999999999999999999999
Q ss_pred HHhhhhhhccC---CCEEEEcCCCCcchHHHHHH-HHhCCcEE----EEeccCCCCCcChhHHHhhc---cCCceEEEEe
Q psy15216 1471 IKGAAHFYKKR---GKHIITVQTEHKSVLDSIRK-LENDGFRV----TYLKPKNNGLITLSQLEEKI---CSDTILVSVM 1539 (2602)
Q Consensus 1471 l~~l~~~~~~~---gd~Vlv~~~~~~s~~~~~~~-~~~~G~~v----~~v~~~~~~~id~d~l~~~i---~~~t~lv~l~ 1539 (2602)
+.++. ++ +++|++++.+|++...++.. +++.|+++ +.++.++++.+|++++++.+ +++|++|+++
T Consensus 103 ~~~~~----~~~~~~~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~t~lv~~~ 178 (406)
T TIGR01814 103 LASFY----KPTPKRYKILLEAKAFPSDHYAIESQLQLHGLTVEESMVQIEPREEETLRLEDILDTIEKNGDDIAVILLS 178 (406)
T ss_pred HHHhc----CCcCCccEEEecCCCCChHHHHHHHHHHhcCCCcccceEEeccCCCCccCHHHHHHHHHhcCCCeEEEEEe
Confidence 99874 34 34789999999998887753 45568887 56666666788999998887 4889999999
Q ss_pred ccccccccccChHHHHHHhhhcCCEEEEecccccCcccccCCCCCccEEEEcccc-ccCCCceEEEEEecCCCCcccccc
Q psy15216 1540 LVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQI 1618 (2602)
Q Consensus 1540 ~~~n~tG~~~~l~~I~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K-~~gp~G~G~l~~~~~~~~~l~~~~ 1618 (2602)
|++|.||.+.|+++|.++|++||+++++|++|++|..++++.++++|++++|+|| ++||+| |+++++++....+.|..
T Consensus 179 ~v~~~tG~~~~~~~i~~~~~~~g~~~~vD~aq~~G~~~id~~~~gvD~~~~s~hK~l~g~pG-~~l~v~~~~~~~~~p~~ 257 (406)
T TIGR01814 179 GVQYYTGQLFDMAAITRAAHAKGALVGFDLAHAVGNVPLDLHDWGVDFACWCTYKYLNAGPG-AGAFVHEKHAHTERPRL 257 (406)
T ss_pred ccccccceecCHHHHHHHHHHcCCEEEEEcccccCCcccccccCCCCEEEEcCccccCCCCC-eEEEEehhhhhhcCCCC
Confidence 9999999999999999999999999999999999999999999999999999999 556778 77887665554555544
Q ss_pred ccCC----------------ccccCCCCCcchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhc---CCcEEE
Q psy15216 1619 HGGG----------------HEYGLRSGTLATHQIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMES---IEEIYI 1678 (2602)
Q Consensus 1619 ~g~~----------------~~~~~~~gt~~~~~~~al~~aL~~~-~~~~~~~~~~~~~l~~~l~~~L~~~---~~gl~i 1678 (2602)
.||. .+.+++.||++++.++++.+||+++ ..+++.+.++...+.+++++.|.+. .+++.+
T Consensus 258 ~g~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~i 337 (406)
T TIGR01814 258 AGWWGHARPTRFKMDNTLGLIPCGFRISNPPILSVAALRGSLDIFDQAGMEALRKKSLLLTDYLEELIKARCGGPPVLTI 337 (406)
T ss_pred CcccCCCCccccccccccCCCccceeeCCccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCceEE
Confidence 4421 1345678999999999999999966 4578999999999999999999772 146888
Q ss_pred eCCCCC-CCCceEEEEEecCCcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEec-CCCCCHHH
Q psy15216 1679 NGDMNN-RIPHNLNISFNFIEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTI-GRFTTEKE 1754 (2602)
Q Consensus 1679 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~-~~~~t~ed 1754 (2602)
.++.+. ..+.+..+.++ .+..++...| +||.+... . .+.||+|+ +.|||.+|
T Consensus 338 ~~~~~~~~r~~~v~~~~~-~~~~~~~~~L~~~gi~v~~~----~-------------------~~~iRiS~~~~~nt~~d 393 (406)
T TIGR01814 338 ITPRDHAQRGCQLSLTHP-VPGKAVFQALIKRGVIGDKR----E-------------------PSVIRVAPVPLYNTFVD 393 (406)
T ss_pred eCCCChhhcCCeEEEEec-CCHHHHHHHHHHCCEEEecc----C-------------------CCeEEEechhccCCHHH
Confidence 865432 22445566666 4667777666 68876411 0 16899999 68999999
Q ss_pred HHHHHHHHHH
Q psy15216 1755 IDFTIKLLKM 1764 (2602)
Q Consensus 1755 id~li~~L~~ 1764 (2602)
|++++++|++
T Consensus 394 id~l~~~l~~ 403 (406)
T TIGR01814 394 VYDAVNVLEE 403 (406)
T ss_pred HHHHHHHHHH
Confidence 9999999986
|
This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen. |
| >PLN02409 serine--glyoxylate aminotransaminase | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=311.25 Aligned_cols=333 Identities=13% Similarity=0.131 Sum_probs=267.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCC-CcEEEeCCHHHHHHHHHHhccc
Q psy15216 2 DYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADP-REIIWTSGATESNNLAIKGAAH 80 (2602)
Q Consensus 2 d~a~~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~-~~Iv~t~g~T~al~~~~~~l~~ 80 (2602)
.+.+-++.|+.|++++.+.+.. + .+....+.++++++.+++++|+++ +.+++++++|++++.++.++.
T Consensus 13 ~~pGP~~~~~~V~~a~~~~~~~-----~-----~~~~~~~~~~~~~~~l~~~~g~~~~~~vi~~~~gt~a~~~a~~~~~- 81 (401)
T PLN02409 13 FVPGPVNIPERVLRAMNRPNED-----H-----RSPAFPALTKELLEDVKYIFKTKSGTPFIFPTTGTGAWESALTNTL- 81 (401)
T ss_pred ccCCCCCCCHHHHHHhcCCCCC-----C-----CCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHhcC-
Confidence 3455557777777777554321 1 234567789999999999999975 468999999999999998876
Q ss_pred ccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccC----CceEEEEecccCcccccccHH
Q psy15216 81 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS----DTILVSVMLVNNEIGVIQPIL 156 (2602)
Q Consensus 81 ~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~----~tklv~i~~~~npTG~~~~l~ 156 (2602)
++||+|+++++.|++.. +...+++.|++++.++.++++.+|++++++++++ ++++|+++|++||||.++|++
T Consensus 82 ---~~Gd~Vlv~~~~~~~~~-~~~~~~~~g~~v~~v~~~~~~~~~~~~l~~~l~~~~~~~~k~v~~~~~~~~tG~~~~~~ 157 (401)
T PLN02409 82 ---SPGDKVVSFRIGQFSLL-WIDQMQRLNFDVDVVESPWGQGADLDILKSKLRQDTNHKIKAVCVVHNETSTGVTNDLA 157 (401)
T ss_pred ---CCCCEEEEeCCCchhHH-HHHHHHHcCCceEEEECCCCCCCCHHHHHHHHhhCcCCCccEEEEEeecccccccCCHH
Confidence 89999999999998753 3455677899999999887667899999999985 789999999999999999999
Q ss_pred HHHHH--HHhcCCEEEEecccccccccccCCCCCccEEEecccc-ccCCCCcEEEEEecCCCCcccc-----eecCCCc-
Q psy15216 157 EIGEL--CRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEA-----QIHGGGH- 227 (2602)
Q Consensus 157 ~I~~l--a~~~g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K-~~Gp~G~G~l~~~~~~~~~l~~-----~~~g~~~- 227 (2602)
+|.++ ||++|+++++|++|++|..++++.++++|++++|+|| ++||+|+|++++++++++++.+ .+.+|..
T Consensus 158 ~i~~l~~~~~~g~~~vvD~v~s~g~~~id~~~~~~D~~~~s~~K~l~~P~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (401)
T PLN02409 158 GVRKLLDCAQHPALLLVDGVSSIGALDFRMDEWGVDVALTGSQKALSLPTGLGIVCASPKALEASKTAKSPRVFFDWADY 237 (401)
T ss_pred HHHHHHhhhccCcEEEEEcccccCCccccccccCccEEEEcCccccCcCCCcceeEECHHHHHHHhcCCCCCeecCHHHH
Confidence 99999 9999999999999999999999999999999999999 5578999999999987766543 2222111
Q ss_pred -----cccccccCcchhHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCC-CCCCCceEEEEEc-
Q psy15216 228 -----EYGLRSGTLATHQIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDM-NNRIPHNLNISFN- 299 (2602)
Q Consensus 228 -----~~~~~~gt~~~~~~~al~~al~~~-~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~-~~~~~~~~~~~~~- 299 (2602)
...+..+|+++..++++.+|+++. ..+++++.+++.++++++++.|.+ .|++++.+. ..+.+.++.+.++
T Consensus 238 ~~~~~~g~~~~~Tp~~~~~~al~~al~~~~~~G~e~i~~~~~~l~~~l~~~L~~--~g~~~~~~~~~~~s~~v~~~~~p~ 315 (401)
T PLN02409 238 LKFYKLGTYWPYTPSIQLLYGLRAALDLIFEEGLENVIARHARLGEATRLAVEA--WGLKLCTKKPEWRSDTVTAVVVPE 315 (401)
T ss_pred HHHHhcCCCCCCCccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH--cCCeeccCChhhcccceEEEeCCC
Confidence 111235699999999999999964 467999999999999999999987 388888653 3345555556655
Q ss_pred ccChhHHHHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhhh
Q psy15216 300 FIEGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKE 370 (2602)
Q Consensus 300 ~~~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~~ 370 (2602)
+.+..++...+ ++|.+..|..... .+.+||+.+.|++.+|+.+++.+|++..
T Consensus 316 ~~~~~~l~~~l~~~~~i~i~~G~~~~~-------------------~~~~Rig~~g~~~~~~~~~~~~~~~~~l 370 (401)
T PLN02409 316 GIDSAEIVKNAWKKYNLSLGLGLNKVA-------------------GKVFRIGHLGNVNELQLLGALAGVEMVL 370 (401)
T ss_pred CCCHHHHHHHHHHhCCEEEEcCCCccc-------------------CCEEEEcCCCCCCHHHHHHHHHHHHHHH
Confidence 45666676665 6899987765322 2789999999999999999999999753
|
|
| >PLN02409 serine--glyoxylate aminotransaminase | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-27 Score=309.10 Aligned_cols=336 Identities=13% Similarity=0.130 Sum_probs=268.5
Q ss_pred cCCCCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCC-CcEEEeCCHHHHHHHHHHhhhhh
Q psy15216 1399 KDATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADP-REIIWTSGATESNNLAIKGAAHF 1477 (2602)
Q Consensus 1399 ~~~~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~-~~iv~t~gaT~al~~al~~l~~~ 1477 (2602)
.......++.+++++.+.+. .| .+....+.++++++.+++++|+++ +.+++++++|++++.++.++.
T Consensus 14 ~pGP~~~~~~V~~a~~~~~~-----~~-----~~~~~~~~~~~~~~~l~~~~g~~~~~~vi~~~~gt~a~~~a~~~~~-- 81 (401)
T PLN02409 14 VPGPVNIPERVLRAMNRPNE-----DH-----RSPAFPALTKELLEDVKYIFKTKSGTPFIFPTTGTGAWESALTNTL-- 81 (401)
T ss_pred cCCCCCCCHHHHHHhcCCCC-----CC-----CCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHhcC--
Confidence 34556778888888765431 12 245667889999999999999965 457889999999999988876
Q ss_pred hccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccC----CceEEEEeccccccccccChHH
Q psy15216 1478 YKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS----DTILVSVMLVNNEIGVIQPILE 1553 (2602)
Q Consensus 1478 ~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~----~t~lv~l~~~~n~tG~~~~l~~ 1553 (2602)
++||+|++++++|++.. +...+++.|++++.++.++++.+|++++++++++ ++++|+++|++|+||.++|+++
T Consensus 82 --~~Gd~Vlv~~~~~~~~~-~~~~~~~~g~~v~~v~~~~~~~~~~~~l~~~l~~~~~~~~k~v~~~~~~~~tG~~~~~~~ 158 (401)
T PLN02409 82 --SPGDKVVSFRIGQFSLL-WIDQMQRLNFDVDVVESPWGQGADLDILKSKLRQDTNHKIKAVCVVHNETSTGVTNDLAG 158 (401)
T ss_pred --CCCCEEEEeCCCchhHH-HHHHHHHcCCceEEEECCCCCCCCHHHHHHHHhhCcCCCccEEEEEeecccccccCCHHH
Confidence 89999999999998754 2355566799999999887667899999999985 7899999999999999999999
Q ss_pred HHHH--hhhcCCEEEEecccccCcccccCCCCCccEEEEcccc-ccCCCceEEEEEecCCCCcccc-----ccccCCc--
Q psy15216 1554 IGEL--CRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEA-----QIHGGGH-- 1623 (2602)
Q Consensus 1554 I~~i--a~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K-~~gp~G~G~l~~~~~~~~~l~~-----~~~g~~~-- 1623 (2602)
|.++ |++||+++++|++|++|..++++.++++|++++|+|| +++|+|+|++++++++++.+.+ .++++..
T Consensus 159 i~~l~~~~~~g~~~vvD~v~s~g~~~id~~~~~~D~~~~s~~K~l~~P~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (401)
T PLN02409 159 VRKLLDCAQHPALLLVDGVSSIGALDFRMDEWGVDVALTGSQKALSLPTGLGIVCASPKALEASKTAKSPRVFFDWADYL 238 (401)
T ss_pred HHHHHhhhccCcEEEEEcccccCCccccccccCccEEEEcCccccCcCCCcceeEECHHHHHHHhcCCCCCeecCHHHHH
Confidence 9999 9999999999999999999999999999999999999 5689999999999887665543 2222111
Q ss_pred ----cccCCCCCcchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCC-CCCCCceEEEEEe-c
Q psy15216 1624 ----EYGLRSGTLATHQIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDM-NNRIPHNLNISFN-F 1696 (2602)
Q Consensus 1624 ----~~~~~~gt~~~~~~~al~~aL~~~-~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~-~~~~~~~~~~~~~-~ 1696 (2602)
...+..+|++++.++++.+++++. ..+++++.+++.++++++++.|.+ .|+.++.+. ..+.+.+..+.+| +
T Consensus 239 ~~~~~g~~~~~Tp~~~~~~al~~al~~~~~~G~e~i~~~~~~l~~~l~~~L~~--~g~~~~~~~~~~~s~~v~~~~~p~~ 316 (401)
T PLN02409 239 KFYKLGTYWPYTPSIQLLYGLRAALDLIFEEGLENVIARHARLGEATRLAVEA--WGLKLCTKKPEWRSDTVTAVVVPEG 316 (401)
T ss_pred HHHhcCCCCCCCccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH--cCCeeccCChhhcccceEEEeCCCC
Confidence 112335699999999999999964 467999999999999999999987 378887643 3344555556555 3
Q ss_pred CCcHHHHHhc---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHhhhhhh
Q psy15216 1697 IEGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKEFFMS 1770 (2602)
Q Consensus 1697 ~~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~~~~~~ 1770 (2602)
.+..++...| ++|.+..|..... .+.+||+.+.|++.+|+.+++.+|.+....+.
T Consensus 317 ~~~~~l~~~l~~~~~i~i~~G~~~~~-------------------~~~~Rig~~g~~~~~~~~~~~~~~~~~l~~~g 374 (401)
T PLN02409 317 IDSAEIVKNAWKKYNLSLGLGLNKVA-------------------GKVFRIGHLGNVNELQLLGALAGVEMVLKDVG 374 (401)
T ss_pred CCHHHHHHHHHHhCCEEEEcCCCccc-------------------CCEEEEcCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 4556666555 6899987765322 27899999999999999999999998654443
|
|
| >cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.3e-27 Score=302.22 Aligned_cols=329 Identities=16% Similarity=0.182 Sum_probs=259.3
Q ss_pred CCCCCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCC-CcEEEeCCHHHHHHHHHHhccccc
Q psy15216 4 SATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADP-REIIWTSGATESNNLAIKGAAHFY 82 (2602)
Q Consensus 4 a~~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~-~~Iv~t~g~T~al~~~~~~l~~~~ 82 (2602)
++..+.|+.+.+++.+.+.. ..+.......+++++.+++++|+++ +.+++++|+|+|+.+++.++.
T Consensus 5 ~~~~~~~~~v~~a~~~~~~~----------~~~~~~~~~~~~~~~~la~~~g~~~~~~~~~~~~~t~al~~~~~~~~--- 71 (356)
T cd06451 5 PGPSNVPPRVLKAMNRPMLG----------HRSPEFLALMDEILEGLRYVFQTENGLTFLLSGSGTGAMEAALSNLL--- 71 (356)
T ss_pred CCCcCCCHHHHHHhCCCccC----------CCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHHHHHHHhC---
Confidence 44447889999988654321 1122345678999999999999954 457899999999999999987
Q ss_pred ccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccC-CceEEEEecccCcccccccHHHHHHH
Q psy15216 83 KKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS-DTILVSVMLVNNEIGVIQPILEIGEL 161 (2602)
Q Consensus 83 ~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~-~tklv~i~~~~npTG~~~~l~~I~~l 161 (2602)
++||+|+++.+.|++.. ....++..|++++.++.++++.+|++++++.+++ ++++|++++++||||.+.|+++|.++
T Consensus 72 -~~g~~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~i~~~~~~~v~i~~~~~~~G~~~~~~~i~~~ 149 (356)
T cd06451 72 -EPGDKVLVGVNGVFGDR-WADMAERYGADVDVVEKPWGEAVSPEEIAEALEQHDIKAVTLTHNETSTGVLNPLEGIGAL 149 (356)
T ss_pred -CCCCEEEEecCCchhHH-HHHHHHHhCCCeEEeecCCCCCCCHHHHHHHHhccCCCEEEEeccCCCcccccCHHHHHHH
Confidence 79999999998887732 2334455699999999887788999999999987 89999999999999999999999999
Q ss_pred HHhcCCEEEEecccccccccccCCCCCccEEEecccccc-CCCCcEEEEEecCCCCcccc--eecCCC----------cc
Q psy15216 162 CRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIY-GPKGIGALYIRRNPRTRIEA--QIHGGG----------HE 228 (2602)
Q Consensus 162 a~~~g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K~~-Gp~G~G~l~~~~~~~~~l~~--~~~g~~----------~~ 228 (2602)
|+++|+++++|++|++|..++++..+++|++++|+||++ +|.|+|++++++++++.+.+ ...++. ..
T Consensus 150 a~~~~~~li~D~~~~~g~~~~~~~~~~~d~~~~s~~K~l~~p~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (356)
T cd06451 150 AKKHDALLIVDAVSSLGGEPFRMDEWGVDVAYTGSQKALGAPPGLGPIAFSERALERIKKKTKPKGFYFDLLLLLKYWGE 229 (356)
T ss_pred HHhcCCEEEEeeehhccCccccccccCccEEEecCchhccCCCCcceeEECHHHHHHHHhcCCCCceeecHHHHHhhhcc
Confidence 999999999999999998888888888999999999955 57799999999887665542 111111 01
Q ss_pred ccccccCcchhHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEc-ccChhHH
Q psy15216 229 YGLRSGTLATHQIVGMGEAFRLAR-IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN-FIEGESL 306 (2602)
Q Consensus 229 ~~~~~gt~~~~~~~al~~al~~~~-~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~-~~~~~~~ 306 (2602)
..+..+++++..++++.+++++.. .+++.+.++..++++++++.|.+ .++++..++..+.+.+..+.++ ..+..++
T Consensus 230 ~~~~~~t~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (356)
T cd06451 230 GYSYPHTPPVNLLYALREALDLILEEGLENRWARHRRLAKALREGLEA--LGLKLLAKPELRSPTVTAVLVPEGVDGDEV 307 (356)
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH--cCCeeccCcccCCCceEEEECCCCCCHHHH
Confidence 124567899999999999998544 56788999999999999999987 3788875544333333344444 3456777
Q ss_pred HHHh--C-CeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 307 LMAI--K-DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 307 ~~~L--~-gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
.+.| + ||.+++|..+.. .++||+|++.++|++|+++++++|++
T Consensus 308 ~~~L~~~~gI~~~~g~~~~~-------------------~~~iRis~~~~~~~e~v~~~~~~l~~ 353 (356)
T cd06451 308 VRRLMKRYNIEIAGGLGPTA-------------------GKVFRIGHMGEATREDVLGVLSALEE 353 (356)
T ss_pred HHHHHHhCCEEEeccccccc-------------------CCEEEEecCCCCCHHHHHHHHHHHHH
Confidence 7777 5 999988765432 27899999999999999999999985
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway. |
| >TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-26 Score=299.89 Aligned_cols=331 Identities=14% Similarity=0.145 Sum_probs=256.4
Q ss_pred CCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCC--cEEEeCCHHHHHHHHHHhccccccc
Q psy15216 7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPR--EIIWTSGATESNNLAIKGAAHFYKK 84 (2602)
Q Consensus 7 ~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~--~Iv~t~g~T~al~~~~~~l~~~~~~ 84 (2602)
+|.|..+.+++.+++...+.. . ...+...++++|+.+++++|++++ +|++|+|+|+|++.++.++. .
T Consensus 8 ~pgp~~~~~~v~~~~~~~~~~--~-----~~~~~~~~~~~r~~la~l~~~~~~~~~i~~t~~~t~al~~~~~~l~----~ 76 (363)
T TIGR02326 8 TPGPLTTSRTVKEAMLFDWCT--W-----DSDYNIVVEQIRQQLLALATAEEGYTSVLLQGSGTFAVEAVIGSAV----P 76 (363)
T ss_pred cCCCCCCCHHHHHHhCCCCCC--C-----ChHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCCHHHHHHHHHhcC----C
Confidence 566777777787777554321 1 235667889999999999999764 69999999999999999987 5
Q ss_pred CCCEEEE-cCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccC--CceEEEEecccCcccccccHHHHHHH
Q psy15216 85 RGKHIIT-VQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS--DTILVSVMLVNNEIGVIQPILEIGEL 161 (2602)
Q Consensus 85 ~gd~Vlv-~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~--~tklv~i~~~~npTG~~~~l~~I~~l 161 (2602)
+||.+++ .+..|+.. ....+++.|++++.++.++++.+|+++++++++. ++++++++|++||||.++|+++|.++
T Consensus 77 ~~~~vlv~~~~~~~~~--~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~i~~I~~l 154 (363)
T TIGR02326 77 KDGKLLVVINGAYGAR--IVQIAEYLGIPHHVVDTGEVEPPDVVEVEAILAADPAITHIALVHCETTTGILNPIEAVAKL 154 (363)
T ss_pred CCCeEEEEeCChhhHH--HHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHhhCCCccEEEEEeecCCccccCcHHHHHHH
Confidence 6766555 54445442 2244466799999999988888999999999974 46789999999999999999999999
Q ss_pred HHhcCCEEEEecccccccccccCCCCCccEEEecccc-ccCCCCcEEEEEecCCCCcccceecCCCc-----------cc
Q psy15216 162 CRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGH-----------EY 229 (2602)
Q Consensus 162 a~~~g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K-~~Gp~G~G~l~~~~~~~~~l~~~~~g~~~-----------~~ 229 (2602)
||+||+++++|++|++|..++++..+++|++++|+|| ++||+|+|+++++++.++.+.+...+... ..
T Consensus 155 ~~~~g~~livD~~~~~g~~~~~~~~~~~D~~~~s~~K~l~~p~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (363)
T TIGR02326 155 AHRHGKVTIVDAMSSFGGIPIDIAELHIDYLISSANKCIQGVPGFGFVIARQAELAACKGNARSLSLDLYDQWRCMEDNH 234 (363)
T ss_pred HHHcCCEEEEEccccccCcccchhhcCccEEEecCccccccCCcceEEEECHHHHHHhhcCCCceeecHHHHHHHHhccC
Confidence 9999999999999999999999999999999999999 56899999999998876654432111100 01
Q ss_pred cccccCcchhHHHHHHHHHHHH-HH-hHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc---cChh
Q psy15216 230 GLRSGTLATHQIVGMGEAFRLA-RI-EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF---IEGE 304 (2602)
Q Consensus 230 ~~~~gt~~~~~~~al~~al~~~-~~-~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~---~~~~ 304 (2602)
+...++++.+.+.++.+|++.. .. +++++.+++.++++++++.|.+ .|+.++.++..+.+....+.++. .+..
T Consensus 235 ~~~~ft~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~~l~~~L~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (363)
T TIGR02326 235 GKWRFTSPTHVVHAFAQALLELEKEGGVAARHQRYQQNQKTLVAGMRA--LGFEPLLDDEIQSPIITSFYSPEDPDYRFA 312 (363)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHH--cCCeeccCcccCCceEEEEECCCCCCCCHH
Confidence 1123477888999999999854 44 4788999999999999999977 37777655444445555666654 3446
Q ss_pred HHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhhhhh
Q psy15216 305 SLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKEFF 372 (2602)
Q Consensus 305 ~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~~~~ 372 (2602)
.+.+.| +||.+++|..+. .+++||+++.+++.+|+++++++|++...|
T Consensus 313 ~v~~~L~~~gi~v~~g~~~~--------------------~~~iRi~~~~~~~~edv~~~l~~l~~~l~~ 362 (363)
T TIGR02326 313 DFYQRLKEQGFVIYPGKVSQ--------------------VDCFRIGNIGEVDAADITRLLTAIGKAMYW 362 (363)
T ss_pred HHHHHHHHCCEEEECCcCCC--------------------CCEEEEecCCCCCHHHHHHHHHHHHHHhCC
Confidence 676666 799998775431 268999988889999999999999975433
|
Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli. |
| >cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-26 Score=296.65 Aligned_cols=329 Identities=16% Similarity=0.180 Sum_probs=257.0
Q ss_pred CCCCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCC-cEEEeCCHHHHHHHHHHhhhhhh
Q psy15216 1400 DATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPR-EIIWTSGATESNNLAIKGAAHFY 1478 (2602)
Q Consensus 1400 ~~~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~-~iv~t~gaT~al~~al~~l~~~~ 1478 (2602)
....+.++.+.+++.+.+.. ..+....+..+++++.+++++|++++ .+++++|+|+|+++++.++.
T Consensus 5 ~~~~~~~~~v~~a~~~~~~~----------~~~~~~~~~~~~~~~~la~~~g~~~~~~~~~~~~~t~al~~~~~~~~--- 71 (356)
T cd06451 5 PGPSNVPPRVLKAMNRPMLG----------HRSPEFLALMDEILEGLRYVFQTENGLTFLLSGSGTGAMEAALSNLL--- 71 (356)
T ss_pred CCCcCCCHHHHHHhCCCccC----------CCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHHHHHHHhC---
Confidence 34457778888888644311 11234456788999999999999544 47889999999999999886
Q ss_pred ccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccC-CceEEEEeccccccccccChHHHHHH
Q psy15216 1479 KKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS-DTILVSVMLVNNEIGVIQPILEIGEL 1557 (2602)
Q Consensus 1479 ~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~-~t~lv~l~~~~n~tG~~~~l~~I~~i 1557 (2602)
++||+|+++.+.|++.. ....++..|+++++++.++++.+|++++++++++ ++++|++++++||||.+.|+++|.++
T Consensus 72 -~~g~~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~i~~~~~~~v~i~~~~~~~G~~~~~~~i~~~ 149 (356)
T cd06451 72 -EPGDKVLVGVNGVFGDR-WADMAERYGADVDVVEKPWGEAVSPEEIAEALEQHDIKAVTLTHNETSTGVLNPLEGIGAL 149 (356)
T ss_pred -CCCCEEEEecCCchhHH-HHHHHHHhCCCeEEeecCCCCCCCHHHHHHHHhccCCCEEEEeccCCCcccccCHHHHHHH
Confidence 79999999998887732 2233455699999999887788999999999987 89999999999999999999999999
Q ss_pred hhhcCCEEEEecccccCcccccCCCCCccEEEEccccc-cCCCceEEEEEecCCCCcccc--ccccCC----------cc
Q psy15216 1558 CRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKI-YGPKGIGALYIRRNPRTRIEA--QIHGGG----------HE 1624 (2602)
Q Consensus 1558 a~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K~-~gp~G~G~l~~~~~~~~~l~~--~~~g~~----------~~ 1624 (2602)
|++||+++++|++|++|..++++..+++|++++|+||+ ++|.|+|++++++++++.+.+ ...++. ..
T Consensus 150 a~~~~~~li~D~~~~~g~~~~~~~~~~~d~~~~s~~K~l~~p~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (356)
T cd06451 150 AKKHDALLIVDAVSSLGGEPFRMDEWGVDVAYTGSQKALGAPPGLGPIAFSERALERIKKKTKPKGFYFDLLLLLKYWGE 229 (356)
T ss_pred HHhcCCEEEEeeehhccCccccccccCccEEEecCchhccCCCCcceeEECHHHHHHHHhcCCCCceeecHHHHHhhhcc
Confidence 99999999999999999888888888899999999994 568899999999876655542 111111 11
Q ss_pred ccCCCCCcchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEe-cCCcHHH
Q psy15216 1625 YGLRSGTLATHQIVGMGEAFRLAR-IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN-FIEGESL 1702 (2602)
Q Consensus 1625 ~~~~~gt~~~~~~~al~~aL~~~~-~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~-~~~~~~~ 1702 (2602)
..+..+++++..++++.++++++. .+++.+.++..++++++++.|.+ .++.+..++....+....+.++ ..+..++
T Consensus 230 ~~~~~~t~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (356)
T cd06451 230 GYSYPHTPPVNLLYALREALDLILEEGLENRWARHRRLAKALREGLEA--LGLKLLAKPELRSPTVTAVLVPEGVDGDEV 307 (356)
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH--cCCeeccCcccCCCceEEEECCCCCCHHHH
Confidence 125677899999999999998544 56788899999999999999987 3777765443333333334444 2355677
Q ss_pred HHhc--C-CEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1703 LMAI--K-DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1703 ~~~L--~-gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
...| + ||.+++|..+..+ ++||+|++.++|++|+++++++|++
T Consensus 308 ~~~L~~~~gI~~~~g~~~~~~-------------------~~iRis~~~~~~~e~v~~~~~~l~~ 353 (356)
T cd06451 308 VRRLMKRYNIEIAGGLGPTAG-------------------KVFRIGHMGEATREDVLGVLSALEE 353 (356)
T ss_pred HHHHHHhCCEEEecccccccC-------------------CEEEEecCCCCCHHHHHHHHHHHHH
Confidence 7776 5 9999887654322 6899999999999999999999986
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway. |
| >TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.4e-26 Score=293.80 Aligned_cols=308 Identities=15% Similarity=0.158 Sum_probs=240.9
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCC--cEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcC-CCCcchHHHHHHHHhCCcEE
Q psy15216 1433 WTAEKAIEKARNEVAQLIYADPR--EIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQ-TEHKSVLDSIRKLENDGFRV 1509 (2602)
Q Consensus 1433 ~~~~~~~~~lr~~ia~~~g~~~~--~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~-~~~~s~~~~~~~~~~~G~~v 1509 (2602)
..+...++++|+.+++++|++++ +|++|+|+|+|++.++.++. .+||.+++.. ..|+.. ....+++.|+++
T Consensus 31 ~~~~~~~~~~r~~la~l~~~~~~~~~i~~t~~~t~al~~~~~~l~----~~~~~vlv~~~~~~~~~--~~~~a~~~g~~~ 104 (363)
T TIGR02326 31 SDYNIVVEQIRQQLLALATAEEGYTSVLLQGSGTFAVEAVIGSAV----PKDGKLLVVINGAYGAR--IVQIAEYLGIPH 104 (363)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCCHHHHHHHHHhcC----CCCCeEEEEeCChhhHH--HHHHHHHcCCce
Confidence 45677899999999999999754 69999999999999999987 5777765544 444432 123345669999
Q ss_pred EEeccCCCCCcChhHHHhhccC--CceEEEEeccccccccccChHHHHHHhhhcCCEEEEecccccCcccccCCCCCccE
Q psy15216 1510 TYLKPKNNGLITLSQLEEKICS--DTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDL 1587 (2602)
Q Consensus 1510 ~~v~~~~~~~id~d~l~~~i~~--~t~lv~l~~~~n~tG~~~~l~~I~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~ 1587 (2602)
+.++.++++.+|+++++++++. ++++++++|++||||.++|+++|.++|++||+++++|++|++|..++++.++++|+
T Consensus 105 ~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~i~~I~~l~~~~g~~livD~~~~~g~~~~~~~~~~~D~ 184 (363)
T TIGR02326 105 HVVDTGEVEPPDVVEVEAILAADPAITHIALVHCETTTGILNPIEAVAKLAHRHGKVTIVDAMSSFGGIPIDIAELHIDY 184 (363)
T ss_pred EEEeCCCCCCCCHHHHHHHHhhCCCccEEEEEeecCCccccCcHHHHHHHHHHcCCEEEEEccccccCcccchhhcCccE
Confidence 9999988888999999999974 45789999999999999999999999999999999999999999999999999999
Q ss_pred EEEcccc-ccCCCceEEEEEecCCCCccccccccCC-----------ccccCCCCCcchhHHHHHHHHHHHH-HH-HHHH
Q psy15216 1588 MSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGG-----------HEYGLRSGTLATHQIVGMGEAFRLA-RI-EMKE 1653 (2602)
Q Consensus 1588 ~v~S~~K-~~gp~G~G~l~~~~~~~~~l~~~~~g~~-----------~~~~~~~gt~~~~~~~al~~aL~~~-~~-~~~~ 1653 (2602)
+++|+|| ++||+|+|+++++++.++.+.+...+.. ...+....|++.+.++++.++++.+ .. ++++
T Consensus 185 ~~~s~~K~l~~p~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ft~~~~~~~al~~al~~l~~~g~~~~ 264 (363)
T TIGR02326 185 LISSANKCIQGVPGFGFVIARQAELAACKGNARSLSLDLYDQWRCMEDNHGKWRFTSPTHVVHAFAQALLELEKEGGVAA 264 (363)
T ss_pred EEecCccccccCCcceEEEECHHHHHHhhcCCCceeecHHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHHhhCHHH
Confidence 9999999 6789999999999876655432111100 0011223467888999999999854 33 4788
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEec---CCcHHHHHhc--CCEEEccccccCCCCCChhHHH
Q psy15216 1654 ELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF---IEGESLLMAI--KDIAVSSGSACTSASLEPSYVL 1728 (2602)
Q Consensus 1654 ~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~ 1728 (2602)
+.+++.++++++++.|.+ .|+.+..++....+....+.++. .+...+...| +||.+++|..+.
T Consensus 265 ~~~~~~~~~~~l~~~L~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~gi~v~~g~~~~---------- 332 (363)
T TIGR02326 265 RHQRYQQNQKTLVAGMRA--LGFEPLLDDEIQSPIITSFYSPEDPDYRFADFYQRLKEQGFVIYPGKVSQ---------- 332 (363)
T ss_pred HHHHHHHHHHHHHHHHHH--cCCeeccCcccCCceEEEEECCCCCCCCHHHHHHHHHHCCEEEECCcCCC----------
Confidence 999999999999999987 37766654433445445566654 2445666666 799998776431
Q ss_pred HHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHhhhh
Q psy15216 1729 RALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKEFF 1768 (2602)
Q Consensus 1729 ~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~~~~ 1768 (2602)
.+++|++++.+++.+|+++++++|++...|
T Consensus 333 ----------~~~iRi~~~~~~~~edv~~~l~~l~~~l~~ 362 (363)
T TIGR02326 333 ----------VDCFRIGNIGEVDAADITRLLTAIGKAMYW 362 (363)
T ss_pred ----------CCEEEEecCCCCCHHHHHHHHHHHHHHhCC
Confidence 168999988889999999999999985433
|
Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli. |
| >PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-26 Score=278.26 Aligned_cols=304 Identities=26% Similarity=0.318 Sum_probs=222.0
Q ss_pred EEEEcCcccEEEEEEECCeeEEEeCCCCCccccEEEEEecCC--cEEEcHHHHhhhccCCCCchhhhhhhhCCCCCCCCC
Q psy15216 640 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDG--KIYVGKKAKITQNIDPKNTISSIKRFIARDLKNINT 717 (2602)
Q Consensus 640 vGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~v~~~~~~--~~~vG~~A~~~~~~~p~~~~~~~K~~lg~~~~~~~~ 717 (2602)
+||||||+|+.|.. .++-.++ + .||+|+++.+. -..+|.+|+....+.|.+..
T Consensus 4 igIDLGT~~t~i~~--~~~Giv~-~------epSvVA~~~~~~~i~avG~~A~~m~gktp~~i~---------------- 58 (326)
T PF06723_consen 4 IGIDLGTSNTRIYV--KGKGIVL-N------EPSVVAYDKDTGKILAVGDEAKAMLGKTPDNIE---------------- 58 (326)
T ss_dssp EEEEE-SSEEEEEE--TTTEEEE-E------EES-EEEETTT--EEEESHHHHTTTTS-GTTEE----------------
T ss_pred eEEecCcccEEEEE--CCCCEEE-e------cCcEEEEECCCCeEEEEhHHHHHHhhcCCCccE----------------
Confidence 89999999999843 2222222 2 39999998653 35789999877666665431
Q ss_pred CCCCeeeecCCCceEEEEeCceeCHHHHHHHHHHHHHHHHHHhhcCccceEEEEEcCCCCHHHHHHHHHHHHHcCCceEE
Q psy15216 718 NSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLR 797 (2602)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~~~~Aa~~AGl~~~~ 797 (2602)
+ .....++.+.-.++...+|+++.+.+.......-.+++|+||+.-++.+|+++.+|+..||.+.+.
T Consensus 59 ------~-------~~Pl~~GvI~D~~~~~~~l~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~a~~~aGa~~V~ 125 (326)
T PF06723_consen 59 ------V-------VRPLKDGVIADYEAAEEMLRYFLKKALGRRSFFRPRVVICVPSGITEVERRALIDAARQAGARKVY 125 (326)
T ss_dssp ------E-------E-SEETTEESSHHHHHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHHHHHTT-SEEE
T ss_pred ------E-------EccccCCcccCHHHHHHHHHHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 0 011224455556788888898888877642333447999999999999999999999999999999
Q ss_pred EechhHHHHHHhhhccCcccceEEEEEeCCceEEEEEEEEECCEEEEEEEecCCCCcchHHHHHHHHHHHHHHhhccCCH
Q psy15216 798 LLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLSY 877 (2602)
Q Consensus 798 li~EPtAAAl~y~~~~~~~~~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~~~~~ 877 (2602)
+|.||.|||+..++.-. .+...||+|+||||+|++++...+ ++.... ...||++||++|.+|+.+++... ..
T Consensus 126 li~ep~AaAiGaGl~i~-~~~g~miVDIG~GtTdiavislgg----iv~s~s-i~~gG~~~DeaI~~~ir~~y~l~-Ig- 197 (326)
T PF06723_consen 126 LIEEPIAAAIGAGLDIF-EPRGSMIVDIGGGTTDIAVISLGG----IVASRS-IRIGGDDIDEAIIRYIREKYNLL-IG- 197 (326)
T ss_dssp EEEHHHHHHHHTT--TT-SSS-EEEEEE-SS-EEEEEEETTE----EEEEEE-ES-SHHHHHHHHHHHHHHHHSEE----
T ss_pred EecchHHHHhcCCCCCC-CCCceEEEEECCCeEEEEEEECCC----EEEEEE-EEecCcchhHHHHHHHHHhhCcc-cC-
Confidence 99999999999887754 455678999999999999996543 333333 57899999999999999997432 11
Q ss_pred HHHHHHHHHHHHHHHHccccc----ceEEEEE---ecCCceEEEEeCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc-cc
Q psy15216 878 KDVNILMIKSREIKELLSYQS----SVKLNVK---LSDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTI-KD 949 (2602)
Q Consensus 878 ~~~~~l~~~~e~~K~~LS~~~----~~~~~i~---~~~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~a~~~~-~~ 949 (2602)
...+|++|+.++... ...+.+. +..|..-+++|+.+++.+.+++.+.++.+.|+++|++..... .|
T Consensus 198 ------~~tAE~iK~~~g~~~~~~~~~~~~v~Grd~~tGlP~~~~i~~~ev~~ai~~~~~~I~~~i~~~Le~~pPel~~D 271 (326)
T PF06723_consen 198 ------ERTAEKIKIEIGSASPPEEEESMEVRGRDLITGLPKSIEITSSEVREAIEPPVDQIVEAIKEVLEKTPPELAAD 271 (326)
T ss_dssp ------HHHHHHHHHHH-BSS--HHHHEEEEEEEETTTTCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHH
T ss_pred ------HHHHHHHHHhcceeeccCCCceEEEECccccCCCcEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 257899999987542 2345554 466788899999999999999999999999999999864321 24
Q ss_pred c--ceEEEecCccchHHHHHHHHhhccCcccCcCCcchHhHHHHHHHh
Q psy15216 950 I--NNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQA 995 (2602)
Q Consensus 950 i--~~V~LvGG~sr~P~v~~~l~~~f~~~~~~~~~p~~aVa~GAa~~a 995 (2602)
| +.|+|+||+++++.+.+.|++.++.++....||..+|+.||....
T Consensus 272 I~~~GI~LtGGga~l~Gl~~~i~~~~~~pV~va~~P~~~va~G~~~~l 319 (326)
T PF06723_consen 272 ILENGIVLTGGGALLRGLDEYISEETGVPVRVADDPLTAVARGAGKLL 319 (326)
T ss_dssp HHHH-EEEESGGGGSBTHHHHHHHHHSS-EEE-SSTTTHHHHHHHHTT
T ss_pred HHHCCEEEEChhhhhccHHHHHHHHHCCCEEEcCCHHHHHHHHHHHHH
Confidence 3 569999999999999999999999999999999999999998755
|
In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A. |
| >cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-26 Score=296.49 Aligned_cols=334 Identities=15% Similarity=0.110 Sum_probs=246.0
Q ss_pred CCCCCCCHHHHHHHHHHHhhhcCCCCCCCcchh---hhHHHHHHHHHHHHHHHhCC-CCCcEEEeCC-HHHHHHHHHHhc
Q psy15216 4 SATTPIDPRVVDKMIPYLRVQFGNPASRNHIYG---WTAEKAIEKARNEVAQLIYA-DPREIIWTSG-ATESNNLAIKGA 78 (2602)
Q Consensus 4 a~~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~---~~~~~~~~~~r~~lA~~~g~-~~~~Iv~t~g-~T~al~~~~~~l 78 (2602)
++.++.|+.|++++.+++.... |++.+.+..+ ..+.+.++++|+.+++++|+ ++++++|++| +|+|+++++.++
T Consensus 5 pGp~~~p~~V~~a~~~~~~~~~-~~~rg~~~~~~r~~~~~~~~~~~r~~l~~l~~~~~~~~vvf~~gs~T~a~~~~~~~l 83 (355)
T cd00611 5 AGPAALPEEVLEQAQKELLDFN-GLGMSVMEMSHRSKDFEAIVNEAESDLRELLNIPDNYKVLFLQGGATGQFAAVPLNL 83 (355)
T ss_pred CCCCCCCHHHHHHHHHHHhhcc-cCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhc
Confidence 5566999999999999987754 8888788777 46668999999999999998 5567999988 999999999999
Q ss_pred ccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCcc-C-hHHHHhhccCCceEEEEecccCcccccccHH
Q psy15216 79 AHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLI-T-LSQLEEKICSDTILVSVMLVNNEIGVIQPIL 156 (2602)
Q Consensus 79 ~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~l-d-~e~l~~~i~~~tklv~i~~~~npTG~~~~l~ 156 (2602)
.. ..++||+|++.... .++.+.+++.|++++.++.++++.. + ++..+..+++++++|+++|.+|.||.+.+
T Consensus 84 ~~-~~~~~~~i~~g~~~----~~~~~~a~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~lV~~~h~~t~tG~~~~-- 156 (355)
T cd00611 84 LG-DKGTADYVVTGAWS----AKAAKEAKRYGGVVVIVAAKEEGKYTKIPDVETWDLAPDAAYVHYCSNETIHGVEFD-- 156 (355)
T ss_pred CC-CCCeEEEEECCHHH----HHHHHHHHhcCCCcEEEecccccCCCCCCCHhhcCCCCCCCEEEEeCCcccccEEcc--
Confidence 61 12467777763221 2334455777999999987655433 4 34444556789999999999999999844
Q ss_pred HHHHHHHhcCCEEEEecccccccccccCCCCCccEEEeccccccCCCCcEEEEEecCCCCcccceecCCC---c--cccc
Q psy15216 157 EIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGG---H--EYGL 231 (2602)
Q Consensus 157 ~I~~la~~~g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K~~Gp~G~G~l~~~~~~~~~l~~~~~g~~---~--~~~~ 231 (2602)
++++.||++++||++|++|+.|+|+++++ ++++|.||++||+|+|++++++++.+++.|...... . ....
T Consensus 157 ---~i~~~~g~~~~VDa~qs~g~~~idv~~~~--~~~ss~~K~lGP~G~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (355)
T cd00611 157 ---EVPDTGGVPLVADMSSNILSRPIDVSKFG--VIYAGAQKNLGPAGVTVVIVRKDLLGKARKITPSMLNYKTHADNNS 231 (355)
T ss_pred ---eecccCCCeEEEEccccccCCCCCHHHhC--EEEeecccccCCCceEEEEECHHHHhhcccCCCCcccHHHHHhcCC
Confidence 45566999999999999999999998876 455779999999999999999988877766432111 0 1112
Q ss_pred cccCcchhHHHHHHHHHHHHH-H-hHHHHHHHHHHHHHHHHHHHhhccCceEEe-CCCCCCCCceEEEEEcccChhHHHH
Q psy15216 232 RSGTLATHQIVGMGEAFRLAR-I-EMKEELKRILFLQKRLYNGLMESIEEIYIN-GDMNNRIPHNLNISFNFIEGESLLM 308 (2602)
Q Consensus 232 ~~gt~~~~~~~al~~al~~~~-~-~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (2602)
..||||+..++++.+|+++.. . +++++.+|++++++++++.|.+ +||+... .++..+.+.++.|.++.. .+..
T Consensus 232 ~~~Tpn~~~i~~L~aal~~l~~~gg~e~i~~~~~~l~~~l~~~l~~-~~gl~~~~~~~~~rs~~vvsf~~~~~---~l~~ 307 (355)
T cd00611 232 LYNTPPTFAIYMMGLVLKWLKEQGGVEAMEKRNRQKAQLLYDTIDN-SNGFYRGPVDKRARSRMNVPFRLGKE---ELEK 307 (355)
T ss_pred CCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHh-CccccccCCCHHHcCceEEEEEcCCh---hhhH
Confidence 368999999999999999665 4 6999999999999999999988 7785212 112233333344444442 1111
Q ss_pred HhCCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 309 AIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 309 ~L~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
.+.++.++.|.+ .+..+ + ..+.+|+|+++|||.+||++|+++|++.
T Consensus 308 ~~~~~~~r~G~~-~~~~~---------~-----~~g~vR~S~~~~nt~edi~~l~~al~~~ 353 (355)
T cd00611 308 EFLKEAEAAGMI-GLKGH---------R-----SVGGIRASIYNALSLEGVQALADFMKEF 353 (355)
T ss_pred HHHHHHHHCCCc-ccCCC---------c-----ccCeEEEEccCCCCHHHHHHHHHHHHHH
Confidence 111334444443 22100 0 1268999999999999999999999963
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine. |
| >COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.9e-26 Score=290.22 Aligned_cols=314 Identities=19% Similarity=0.191 Sum_probs=241.8
Q ss_pred CCCCCHHHHHHHHHHHhhc--cCCCCCccchhHHHHHHHHHHHHHHHHHHh----C--CCCCc-EEEeCCHHHHHHHHHH
Q psy15216 1402 TTPIDPRVVDKMIPYLRVQ--FGNPASRNHIYGWTAEKAIEKARNEVAQLI----Y--ADPRE-IIWTSGATESNNLAIK 1472 (2602)
Q Consensus 1402 ~~~~~~~v~eal~~~l~~~--~~np~~~~~~~~~~~~~~~~~lr~~ia~~~----g--~~~~~-iv~t~gaT~al~~al~ 1472 (2602)
+.+.|..+.+++.+.+... .++|.. ...++|+++++++ | .++++ |++|+|+++|+..++.
T Consensus 39 d~~~p~~i~~a~~~a~~~~~~~Y~~~~-----------G~~~LReaia~~~~~~~~~~~~~~~eiivt~Ga~~al~~~~~ 107 (393)
T COG0436 39 DFPTPEHIIEAAIEALEEGGTHYTPSA-----------GIPELREAIAEKYKRRYGLDVDPEEEIIVTAGAKEALFLAFL 107 (393)
T ss_pred CCCCCHHHHHHHHHHHhcccCCCCCCC-----------CCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCCHHHHHHHHHH
Confidence 3478889999999988763 122222 2456666666655 4 35555 9999999999999999
Q ss_pred hhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccC---CCCCcChhHHHhhccCCceEEEEecccccccccc
Q psy15216 1473 GAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK---NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQ 1549 (2602)
Q Consensus 1473 ~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~---~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~ 1549 (2602)
++. +|||+|++++|.|++|......+ |++++.++++ .++.+|+++|+++++++||+|++++||||||.++
T Consensus 108 a~~----~pGDeVlip~P~Y~~y~~~~~~~---gg~~v~v~l~~~~~~f~~d~~~l~~~i~~ktk~i~ln~P~NPTGav~ 180 (393)
T COG0436 108 ALL----NPGDEVLIPDPGYPSYEAAVKLA---GGKPVPVPLDEEENGFKPDLEDLEAAITPKTKAIILNSPNNPTGAVY 180 (393)
T ss_pred Hhc----CCCCEEEEeCCCCcCHHHHHHhc---CCEEEEEeCCcCccCCcCCHHHHHhhcCccceEEEEeCCCCCcCcCC
Confidence 998 89999999999999999988887 9999999975 3688999999999999999999999999999999
Q ss_pred C---hHHHHHHhhhcCCEEEEeccccc----Cccccc---CCCC-CccEEEEccccccCCCc--eEEEEEe-cCCCCccc
Q psy15216 1550 P---ILEIGELCRSKGVIFHCDAAQAV----GKIDIN---IQNY-KVDLMSFSAHKIYGPKG--IGALYIR-RNPRTRIE 1615 (2602)
Q Consensus 1550 ~---l~~I~~ia~~~gi~vivD~a~~~----g~~~~~---l~~~-~~D~~v~S~~K~~gp~G--~G~l~~~-~~~~~~l~ 1615 (2602)
+ +++|+++|++||+++|.|++|.- +..+.. +... ..-+.+.|+||.++++| +||++++ +++++.+.
T Consensus 181 ~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~~~~~s~~~~~~~~~~~i~i~s~SK~~~mtGwRvG~~v~~~~~l~~~~~ 260 (393)
T COG0436 181 SKEELKAIVELAREHDIIIISDEIYEELVYDGAEHPSILELAGARDRTITINSFSKTYGMTGWRIGWVVGPPEELIAALR 260 (393)
T ss_pred CHHHHHHHHHHHHHcCeEEEEehhhhhcccCCCCcCCHhhcCCCcceEEEEecccccccccccceeEeecChHHHHHHHH
Confidence 9 88999999999999999999742 211222 2221 23477779999999999 9999999 55555554
Q ss_pred cccccCCccccCCCCCcchhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEE
Q psy15216 1616 AQIHGGGHEYGLRSGTLATHQIVGMGEAFRLA--RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNIS 1693 (2602)
Q Consensus 1616 ~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~--~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~ 1693 (2602)
.+. .....+++.+.+.|..+||+.. ....+..++.+.++++.+++.|.+ .+|+.+..++ .+.++.
T Consensus 261 ~~~-------~~~~~~~~~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~rrd~l~~~l~~-~~g~~~~~~p-----~Ga~Y~ 327 (393)
T COG0436 261 KLK-------SYLTSCAPTPAQYAAIAALNGPQSDEVVEEMREEYRERRDLLVEALNE-IGGLSVVKPP-----EGAFYL 327 (393)
T ss_pred HHH-------HhcccCCCHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHh-cCCeeeccCC-----CeeEEE
Confidence 322 1223356666666666888844 345677778999999999999998 6788887543 344455
Q ss_pred Eec----CCcHHHHHhc---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1694 FNF----IEGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1694 ~~~----~~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
|+. .++.++...| .||.+.||..|+.. ...++||+|+.. +.++++.+++++.+
T Consensus 328 ~~~i~~~~d~~~f~~~Ll~~~gV~v~PG~~Fg~~----------------~g~~~vRis~~~--~~~~l~~a~~rl~~ 387 (393)
T COG0436 328 FPKIPELLDSEEFAKKLLEEAGVAVVPGSGFGEP----------------PGEGYVRLSLAT--SEETLEEALRRLAR 387 (393)
T ss_pred EeecCCCCCHHHHHHHHHHhCCEEEecccccCCC----------------CCCCeEEEEEec--CHHHHHHHHHHHHH
Confidence 553 3556777776 78999999998752 124899999985 55999999999986
|
|
| >PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.9e-26 Score=278.46 Aligned_cols=305 Identities=25% Similarity=0.310 Sum_probs=222.4
Q ss_pred EEEEEcCcccEEEEEEECCeEEEEeCCCCCccccEEEEEecCCc--EEecHHHHhhhccCCCCchhhhhhhcCCCCCCCC
Q psy15216 2035 SIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGK--IYVGKKAKITQNIDPKNTISSIKRFIARDLKNIN 2112 (2602)
Q Consensus 2035 vvGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~~~~--~~vG~~A~~~~~~~p~~~~~~~K~~lg~~~~~~~ 2112 (2602)
-+||||||+|+.|+. .++-.++ + .||+|++..+.. ..+|.+|+....+.|.+..
T Consensus 3 ~igIDLGT~~t~i~~--~~~Giv~-~------epSvVA~~~~~~~i~avG~~A~~m~gktp~~i~--------------- 58 (326)
T PF06723_consen 3 DIGIDLGTSNTRIYV--KGKGIVL-N------EPSVVAYDKDTGKILAVGDEAKAMLGKTPDNIE--------------- 58 (326)
T ss_dssp EEEEEE-SSEEEEEE--TTTEEEE-E------EES-EEEETTT--EEEESHHHHTTTTS-GTTEE---------------
T ss_pred ceEEecCcccEEEEE--CCCCEEE-e------cCcEEEEECCCCeEEEEhHHHHHHhhcCCCccE---------------
Confidence 389999999999843 3332232 2 399999986532 5789999887766665432
Q ss_pred CCCCCeeeecCCCceEEEecCceeCHHHHHHHHHHHHHHHHHHhhccccceEEEeeCCCCCHHHHHHHHHHHHHcCCcee
Q psy15216 2113 TNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVL 2192 (2602)
Q Consensus 2113 ~~~~~~~~~~~~g~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~l~~Aa~~AGl~~~ 2192 (2602)
+......+...-.++...+|+++.+.+.......-..++++||+.-++.+|+++.+|+..||.+.+
T Consensus 59 --------------~~~Pl~~GvI~D~~~~~~~l~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~a~~~aGa~~V 124 (326)
T PF06723_consen 59 --------------VVRPLKDGVIADYEAAEEMLRYFLKKALGRRSFFRPRVVICVPSGITEVERRALIDAARQAGARKV 124 (326)
T ss_dssp --------------EE-SEETTEESSHHHHHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHHHHHTT-SEE
T ss_pred --------------EEccccCCcccCHHHHHHHHHHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCEE
Confidence 001122344555678888888888877764333345799999999999999999999999999999
Q ss_pred EeechhHHHHHHhhhccCCCCceEEEEEeCCceEEEEEEEEeCCEEEEEEEecCCCCchhHHHHHHHHHHHHHHhhhcCC
Q psy15216 2193 RLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLS 2272 (2602)
Q Consensus 2193 ~li~EP~AAAl~y~~~~~~~~~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~~~~ 2272 (2602)
.+|.||.|||+..++.-.. +...||+|+||||||++++...+ ++.+.. ...||++||++|.+|+.++|- -..
T Consensus 125 ~li~ep~AaAiGaGl~i~~-~~g~miVDIG~GtTdiavislgg----iv~s~s-i~~gG~~~DeaI~~~ir~~y~-l~I- 196 (326)
T PF06723_consen 125 YLIEEPIAAAIGAGLDIFE-PRGSMIVDIGGGTTDIAVISLGG----IVASRS-IRIGGDDIDEAIIRYIREKYN-LLI- 196 (326)
T ss_dssp EEEEHHHHHHHHTT--TTS-SS-EEEEEE-SS-EEEEEEETTE----EEEEEE-ES-SHHHHHHHHHHHHHHHHS-EE--
T ss_pred EEecchHHHHhcCCCCCCC-CCceEEEEECCCeEEEEEEECCC----EEEEEE-EEecCcchhHHHHHHHHHhhC-ccc-
Confidence 9999999999999887654 44568999999999999997554 444444 689999999999999998741 111
Q ss_pred hhHHHHHHHHHHHHHHHhcccc----eEEEEEE---ecCCceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc-c
Q psy15216 2273 YKDVNILMIKSREIKELLSYQS----SVKLNVK---LSDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTI-K 2344 (2602)
Q Consensus 2273 ~~~~~~l~~~~e~~K~~ls~~~----~~~~~i~---~~~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~~~~~~-~ 2344 (2602)
=...+|++|+.++... ...+.+. +..|....++++-+++.+.+++.+.++.+.|+++|++..... .
T Consensus 197 ------g~~tAE~iK~~~g~~~~~~~~~~~~v~Grd~~tGlP~~~~i~~~ev~~ai~~~~~~I~~~i~~~Le~~pPel~~ 270 (326)
T PF06723_consen 197 ------GERTAEKIKIEIGSASPPEEEESMEVRGRDLITGLPKSIEITSSEVREAIEPPVDQIVEAIKEVLEKTPPELAA 270 (326)
T ss_dssp -------HHHHHHHHHHH-BSS--HHHHEEEEEEEETTTTCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHH
T ss_pred ------CHHHHHHHHHhcceeeccCCCceEEEECccccCCCcEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 1367899999987532 2345554 566777899999999999999999999999999999874432 2
Q ss_pred cc--ceEEEEeCccchHHHHHHHHhhcCCcccCCCCccchhhhHHHHHh
Q psy15216 2345 DI--NNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQA 2391 (2602)
Q Consensus 2345 ~i--~~V~LvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~aVa~GAa~~a 2391 (2602)
|| +.|+|+||+|+++.+.++|++.++.++....||..+|+.||....
T Consensus 271 DI~~~GI~LtGGga~l~Gl~~~i~~~~~~pV~va~~P~~~va~G~~~~l 319 (326)
T PF06723_consen 271 DILENGIVLTGGGALLRGLDEYISEETGVPVRVADDPLTAVARGAGKLL 319 (326)
T ss_dssp HHHHH-EEEESGGGGSBTHHHHHHHHHSS-EEE-SSTTTHHHHHHHHTT
T ss_pred HHHHCCEEEEChhhhhccHHHHHHHHHCCCEEEcCCHHHHHHHHHHHHH
Confidence 44 569999999999999999999999999999999999999999765
|
In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A. |
| >cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-26 Score=292.53 Aligned_cols=335 Identities=15% Similarity=0.120 Sum_probs=245.1
Q ss_pred ccCCCCCCCHHHHHHHHHHHhhccCCCCCccchhH---HHHHHHHHHHHHHHHHHhCC-CCCcEEEeCC-HHHHHHHHHH
Q psy15216 1398 FKDATTPIDPRVVDKMIPYLRVQFGNPASRNHIYG---WTAEKAIEKARNEVAQLIYA-DPREIIWTSG-ATESNNLAIK 1472 (2602)
Q Consensus 1398 L~~~~~~~~~~v~eal~~~l~~~~~np~~~~~~~~---~~~~~~~~~lr~~ia~~~g~-~~~~iv~t~g-aT~al~~al~ 1472 (2602)
++..++++|+.+++++.+++.... |++++.|..+ ..+.+.++++|+.+++++|+ ++++++||+| +|++++.++.
T Consensus 3 ~~pGp~~~p~~V~~a~~~~~~~~~-~~~rg~~~~~~r~~~~~~~~~~~r~~l~~l~~~~~~~~vvf~~gs~T~a~~~~~~ 81 (355)
T cd00611 3 FSAGPAALPEEVLEQAQKELLDFN-GLGMSVMEMSHRSKDFEAIVNEAESDLRELLNIPDNYKVLFLQGGATGQFAAVPL 81 (355)
T ss_pred CCCCCCCCCHHHHHHHHHHHhhcc-cCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHH
Confidence 445667899999999999997654 8888777777 57778999999999999998 5667999987 9999999999
Q ss_pred hhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCc-C-hhHHHhhccCCceEEEEeccccccccccC
Q psy15216 1473 GAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLI-T-LSQLEEKICSDTILVSVMLVNNEIGVIQP 1550 (2602)
Q Consensus 1473 ~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~i-d-~d~l~~~i~~~t~lv~l~~~~n~tG~~~~ 1550 (2602)
++.. ..++|++|++....| .+.+.+++.|+++++++.++++.+ + ++..+..++++|++|.++|.+|.||..++
T Consensus 82 ~l~~-~~~~~~~i~~g~~~~----~~~~~a~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~lV~~~h~~t~tG~~~~ 156 (355)
T cd00611 82 NLLG-DKGTADYVVTGAWSA----KAAKEAKRYGGVVVIVAAKEEGKYTKIPDVETWDLAPDAAYVHYCSNETIHGVEFD 156 (355)
T ss_pred hcCC-CCCeEEEEECCHHHH----HHHHHHHhcCCCcEEEecccccCCCCCCCHhhcCCCCCCCEEEEeCCcccccEEcc
Confidence 9961 124677776632222 224455667999999987655433 5 44444567889999999999999999844
Q ss_pred hHHHHHHhhhcCCEEEEecccccCcccccCCCCCccEEEEccccccCCCceEEEEEecCCCCccccccccCC---c--cc
Q psy15216 1551 ILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGG---H--EY 1625 (2602)
Q Consensus 1551 l~~I~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K~~gp~G~G~l~~~~~~~~~l~~~~~g~~---~--~~ 1625 (2602)
++++.||++++||++|++|+.++|+.+++ ++++|.||++||+|+|++++++++.+++.|...... . ..
T Consensus 157 -----~i~~~~g~~~~VDa~qs~g~~~idv~~~~--~~~ss~~K~lGP~G~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (355)
T cd00611 157 -----EVPDTGGVPLVADMSSNILSRPIDVSKFG--VIYAGAQKNLGPAGVTVVIVRKDLLGKARKITPSMLNYKTHADN 229 (355)
T ss_pred -----eecccCCCeEEEEccccccCCCCCHHHhC--EEEeecccccCCCceEEEEECHHHHhhcccCCCCcccHHHHHhc
Confidence 45566999999999999999999998876 455679998899999999999988776655322111 0 11
Q ss_pred cCCCCCcchhHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHhhcCCcEEEeC-CCCCCCCceEEEEEecCCcHHH
Q psy15216 1626 GLRSGTLATHQIVGMGEAFRLAR-I-EMKEELKRILFLQKRLYNGLMESIEEIYING-DMNNRIPHNLNISFNFIEGESL 1702 (2602)
Q Consensus 1626 ~~~~gt~~~~~~~al~~aL~~~~-~-~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~-~~~~~~~~~~~~~~~~~~~~~~ 1702 (2602)
....+||+++.++++.+|++++. . +++++.+|++++++++++.|.+ ++|+.... .+..+.+....|.++.. .+
T Consensus 230 ~~~~~Tpn~~~i~~L~aal~~l~~~gg~e~i~~~~~~l~~~l~~~l~~-~~gl~~~~~~~~~rs~~vvsf~~~~~---~l 305 (355)
T cd00611 230 NSLYNTPPTFAIYMMGLVLKWLKEQGGVEAMEKRNRQKAQLLYDTIDN-SNGFYRGPVDKRARSRMNVPFRLGKE---EL 305 (355)
T ss_pred CCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHh-CccccccCCCHHHcCceEEEEEcCCh---hh
Confidence 22368999999999999999665 4 6999999999999999999998 77853121 11223333344444332 11
Q ss_pred HHhcCCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1703 LMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1703 ~~~L~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
.....++.++.|.+ .+... + ..+.+|+|+++|||.+||++++++|++
T Consensus 306 ~~~~~~~~~r~G~~-~~~~~---------~-----~~g~vR~S~~~~nt~edi~~l~~al~~ 352 (355)
T cd00611 306 EKEFLKEAEAAGMI-GLKGH---------R-----SVGGIRASIYNALSLEGVQALADFMKE 352 (355)
T ss_pred hHHHHHHHHHCCCc-ccCCC---------c-----ccCeEEEEccCCCCHHHHHHHHHHHHH
Confidence 11111233344442 21100 0 126899999999999999999999997
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine. |
| >COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-25 Score=270.61 Aligned_cols=336 Identities=15% Similarity=0.193 Sum_probs=276.4
Q ss_pred CCCCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCC-CcEEEeCCHHHHHHHHHHhhhhhh
Q psy15216 1400 DATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADP-REIIWTSGATESNNLAIKGAAHFY 1478 (2602)
Q Consensus 1400 ~~~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~-~~iv~t~gaT~al~~al~~l~~~~ 1478 (2602)
....+.++.+++++...+- ++.+..+...+.++++.+...++++. +-+++++++|.|+..++.++.
T Consensus 11 PGP~~v~~~V~~am~~~~~----------~h~s~~F~~~~~~~~~~L~~v~~t~~~~~~ll~gsGt~amEAav~sl~--- 77 (383)
T COG0075 11 PGPVPVPPRVLLAMARPMV----------GHRSPDFVGIMKEVLEKLRKVFGTENGDVVLLSGSGTLAMEAAVASLV--- 77 (383)
T ss_pred CCCCCCCHHHHHHhcCCCC----------CCCCHHHHHHHHHHHHHHHHHhcCCCCcEEEEcCCcHHHHHHHHHhcc---
Confidence 3446778888888766441 23467888999999999999999874 457778999999999999998
Q ss_pred ccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhcc--CCceEEEEeccccccccccChHHHHH
Q psy15216 1479 KKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKIC--SDTILVSVMLVNNEIGVIQPILEIGE 1556 (2602)
Q Consensus 1479 ~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~--~~t~lv~l~~~~n~tG~~~~l~~I~~ 1556 (2602)
+|||+||+......+. .+.+.+++.|++++.+..+++-.+|++++++++. ++.++|.++|..++||.++|+++|++
T Consensus 78 -~pgdkVLv~~nG~FG~-R~~~ia~~~g~~v~~~~~~wg~~v~p~~v~~~L~~~~~~~~V~~vH~ETSTGvlnpl~~I~~ 155 (383)
T COG0075 78 -EPGDKVLVVVNGKFGE-RFAEIAERYGAEVVVLEVEWGEAVDPEEVEEALDKDPDIKAVAVVHNETSTGVLNPLKEIAK 155 (383)
T ss_pred -CCCCeEEEEeCChHHH-HHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhcCCCccEEEEEeccCcccccCcHHHHHH
Confidence 8999999998887774 4567778889999999999888899999999998 45789999999999999999999999
Q ss_pred HhhhcCCEEEEecccccCcccccCCCCCccEEEEcccc-ccCCCceEEEEEecCCCCccccc-----cccC-----Cccc
Q psy15216 1557 LCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQ-----IHGG-----GHEY 1625 (2602)
Q Consensus 1557 ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K-~~gp~G~G~l~~~~~~~~~l~~~-----~~g~-----~~~~ 1625 (2602)
+|++||+++|||+..++|..++++++|++|+++.+++| +.+|+|+|++.++++..+.+... +..- ....
T Consensus 156 ~~k~~g~l~iVDaVsS~Gg~~~~vd~wgiDv~itgSQK~l~~PPGla~v~~S~~a~e~~~~~~~~~~ylDL~~~~~~~~~ 235 (383)
T COG0075 156 AAKEHGALLIVDAVSSLGGEPLKVDEWGIDVAITGSQKALGAPPGLAFVAVSERALEAIEERKHPSFYLDLKKWLKYMEK 235 (383)
T ss_pred HHHHcCCEEEEEecccCCCcccchhhcCccEEEecCchhccCCCccceeEECHHHHHHHhcCCCCceeecHHHHHHHHhh
Confidence 99999999999999999999999999999999999999 78899999999998866554321 1110 0112
Q ss_pred -cCCCCCcchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEec-CCcHHH
Q psy15216 1626 -GLRSGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGESL 1702 (2602)
Q Consensus 1626 -~~~~gt~~~~~~~al~~aL~-~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~-~~~~~~ 1702 (2602)
+..+.||++..++|+.+||+ ...++++++.+|++.+.+++++++.+ .|+.++..+...+|..+.+..|. .+...+
T Consensus 236 ~~~~p~Tppv~~i~aL~~al~~i~~EGle~r~~RH~~~~~a~r~~~~a--lGl~~~~~~~~~s~tvta~~~P~g~~~~~~ 313 (383)
T COG0075 236 KGSTPYTPPVNLIYALREALDLILEEGLEARIARHRRLAEALRAGLEA--LGLELFADPERRSPTVTAIKVPEGVDDKKV 313 (383)
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH--cCCccccCcccCCCceEEEECCCCCCcHHH
Confidence 45678999999999999999 55678999999999999999999988 68888876666777777777774 343333
Q ss_pred HHhc---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHhhhhhhh
Q psy15216 1703 LMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKEFFMSY 1771 (2602)
Q Consensus 1703 ~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~~~~~~y 1771 (2602)
...+ +++.+.+|..... ...+||+...+-+.+++.+++.+|.....+..+
T Consensus 314 ~~~~~~~~g~~i~gg~~~l~-------------------gkifRIGhMG~~~~~dv~~~l~ale~~L~~~g~ 366 (383)
T COG0075 314 RRALLKEYGVEIAGGQGPLK-------------------GKIFRIGHMGNVRPEDVLAALAALEAALRELGV 366 (383)
T ss_pred HHHHHHhCCEEecccccccC-------------------ccEEEEecCccCCHHHHHHHHHHHHHHHHHcCC
Confidence 3333 6888887654333 278999988899999999999999987655543
|
|
| >COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.7e-25 Score=270.92 Aligned_cols=334 Identities=16% Similarity=0.198 Sum_probs=273.5
Q ss_pred CCCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCC-CcEEEeCCHHHHHHHHHHhccccccc
Q psy15216 6 TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADP-REIIWTSGATESNNLAIKGAAHFYKK 84 (2602)
Q Consensus 6 ~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~-~~Iv~t~g~T~al~~~~~~l~~~~~~ 84 (2602)
-++.++.|+.++..-+. +..+..+...+.++.+.+...++++. +-+++++++|.|++.++.++. +
T Consensus 13 P~~v~~~V~~am~~~~~----------~h~s~~F~~~~~~~~~~L~~v~~t~~~~~~ll~gsGt~amEAav~sl~----~ 78 (383)
T COG0075 13 PVPVPPRVLLAMARPMV----------GHRSPDFVGIMKEVLEKLRKVFGTENGDVVLLSGSGTLAMEAAVASLV----E 78 (383)
T ss_pred CCCCCHHHHHHhcCCCC----------CCCCHHHHHHHHHHHHHHHHHhcCCCCcEEEEcCCcHHHHHHHHHhcc----C
Confidence 34556666665554321 12356777899999999999999874 567888999999999999998 8
Q ss_pred CCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhcc--CCceEEEEecccCcccccccHHHHHHHH
Q psy15216 85 RGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKIC--SDTILVSVMLVNNEIGVIQPILEIGELC 162 (2602)
Q Consensus 85 ~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~--~~tklv~i~~~~npTG~~~~l~~I~~la 162 (2602)
|||+|++......+. ++.++++++|++++.+..+++..+|+++++++++ ++.++|+++|+.++||.++|+++|+++|
T Consensus 79 pgdkVLv~~nG~FG~-R~~~ia~~~g~~v~~~~~~wg~~v~p~~v~~~L~~~~~~~~V~~vH~ETSTGvlnpl~~I~~~~ 157 (383)
T COG0075 79 PGDKVLVVVNGKFGE-RFAEIAERYGAEVVVLEVEWGEAVDPEEVEEALDKDPDIKAVAVVHNETSTGVLNPLKEIAKAA 157 (383)
T ss_pred CCCeEEEEeCChHHH-HHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhcCCCccEEEEEeccCcccccCcHHHHHHHH
Confidence 999999998887774 6778889999999999999988999999999998 4578999999999999999999999999
Q ss_pred HhcCCEEEEecccccccccccCCCCCccEEEecccc-ccCCCCcEEEEEecCCCCcccceecC-CC---------ccc-c
Q psy15216 163 RSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHG-GG---------HEY-G 230 (2602)
Q Consensus 163 ~~~g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K-~~Gp~G~G~l~~~~~~~~~l~~~~~g-~~---------~~~-~ 230 (2602)
++||.++|||++.++|..++++++|++|+++++.+| +.+|+|+|++.++++..+.+...... +. .+. +
T Consensus 158 k~~g~l~iVDaVsS~Gg~~~~vd~wgiDv~itgSQK~l~~PPGla~v~~S~~a~e~~~~~~~~~~ylDL~~~~~~~~~~~ 237 (383)
T COG0075 158 KEHGALLIVDAVSSLGGEPLKVDEWGIDVAITGSQKALGAPPGLAFVAVSERALEAIEERKHPSFYLDLKKWLKYMEKKG 237 (383)
T ss_pred HHcCCEEEEEecccCCCcccchhhcCccEEEecCchhccCCCccceeEECHHHHHHHhcCCCCceeecHHHHHHHHhhcC
Confidence 999999999999999999999999999999999999 77899999999999876655432211 11 112 4
Q ss_pred ccccCcchhHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc-cChhHHHH
Q psy15216 231 LRSGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGESLLM 308 (2602)
Q Consensus 231 ~~~gt~~~~~~~al~~al~-~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~ 308 (2602)
..+.||++..++++..||+ +..++++++.+|++.+++++++.+.+ .|++++..+...+|..+.+..|. .+...+..
T Consensus 238 ~~p~Tppv~~i~aL~~al~~i~~EGle~r~~RH~~~~~a~r~~~~a--lGl~~~~~~~~~s~tvta~~~P~g~~~~~~~~ 315 (383)
T COG0075 238 STPYTPPVNLIYALREALDLILEEGLEARIARHRRLAEALRAGLEA--LGLELFADPERRSPTVTAIKVPEGVDDKKVRR 315 (383)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH--cCCccccCcccCCCceEEEECCCCCCcHHHHH
Confidence 5678999999999999999 55688999999999999999999988 69999886667777777777774 44433333
Q ss_pred Hh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhhhhhhhh
Q psy15216 309 AI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKEFFMSY 375 (2602)
Q Consensus 309 ~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~~~~~~y 375 (2602)
.+ +++.+..|..... ..++||+...+.+.+++..++.+|+....+-.+
T Consensus 316 ~~~~~~g~~i~gg~~~l~-------------------gkifRIGhMG~~~~~dv~~~l~ale~~L~~~g~ 366 (383)
T COG0075 316 ALLKEYGVEIAGGQGPLK-------------------GKIFRIGHMGNVRPEDVLAALAALEAALRELGV 366 (383)
T ss_pred HHHHhCCEEecccccccC-------------------ccEEEEecCccCCHHHHHHHHHHHHHHHHHcCC
Confidence 34 6888876654322 378999986699999999999999976544333
|
|
| >PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-25 Score=289.19 Aligned_cols=329 Identities=15% Similarity=0.135 Sum_probs=254.3
Q ss_pred CCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCC--CcEEEeCCHHHHHHHHHHhccccccc
Q psy15216 7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADP--REIIWTSGATESNNLAIKGAAHFYKK 84 (2602)
Q Consensus 7 ~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~--~~Iv~t~g~T~al~~~~~~l~~~~~~ 84 (2602)
+|.|..+.+++.+++...+.. . ...+.+.++++|+.+++++|+++ +.+++++|+|++++.++.++. .
T Consensus 10 ~pgP~~~~~~~~~a~~~~~~~------~-~~~~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~gt~~l~~~~~~l~----~ 78 (368)
T PRK13479 10 TPGPLTTSRTVREAMLRDWGS------W-DDDFNALTASVRAKLVAIATGEEGYTCVPLQGSGTFSVEAAIGSLV----P 78 (368)
T ss_pred cCCCCCCCHHHHHHhCCCCCC------C-ChHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCcHHHHHHHHHhcc----C
Confidence 466666666666666543311 1 22234578999999999999965 458899999999999999998 6
Q ss_pred CCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccC--CceEEEEecccCcccccccHHHHHHHH
Q psy15216 85 RGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS--DTILVSVMLVNNEIGVIQPILEIGELC 162 (2602)
Q Consensus 85 ~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~--~tklv~i~~~~npTG~~~~l~~I~~la 162 (2602)
+||.|++..+.+++.. +...+++.|++++.++.++++.+|++++++++++ ++++++++|++||||.+.|+++|.++|
T Consensus 79 ~~~~vlv~~~~~~~~~-~~~~~~~~g~~~~~i~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~~~~i~~l~ 157 (368)
T PRK13479 79 RDGKVLVPDNGAYGAR-IAQIAEYLGIAHVVLDTGEDEPPDAAEVEAALAADPRITHVALVHCETTTGILNPLDEIAAVA 157 (368)
T ss_pred CCCeEEEEeCCchHHH-HHHHHHHcCCcEEEEECCCCCCCCHHHHHHHHHhCCCCcEEEEEcccCccccccCHHHHHHHH
Confidence 8888888776655432 2355566799999999887788999999999864 467899999999999999999999999
Q ss_pred HhcCCEEEEecccccccccccCCCCCccEEEecccc-ccCCCCcEEEEEecCCCCcccceecCCCcc----------ccc
Q psy15216 163 RSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGHE----------YGL 231 (2602)
Q Consensus 163 ~~~g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K-~~Gp~G~G~l~~~~~~~~~l~~~~~g~~~~----------~~~ 231 (2602)
|++|+++++|++|++|..++++.++++|++++|+|| ++||+|+||+++++++++.+.+....+... ...
T Consensus 158 ~~~~~~livDa~~~~g~~~~~~~~~~~d~~v~s~~K~l~g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (368)
T PRK13479 158 KRHGKRLIVDAMSSFGAIPIDIAELGIDALISSANKCIEGVPGFGFVIARRSELEACKGNSRSLSLDLYDQWAYMEKTGQ 237 (368)
T ss_pred HHcCCEEEEEcccccCCccccccccCceEEEecCccccccCCCceEEEECHHHHHHhhcCCCCeeecHHHHHhhhcccCC
Confidence 999999999999999998899988899999999999 679999999999988766654432211100 011
Q ss_pred cccCcchhHHHHHHHHHHHH-HH-hHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEccc---ChhHH
Q psy15216 232 RSGTLATHQIVGMGEAFRLA-RI-EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI---EGESL 306 (2602)
Q Consensus 232 ~~gt~~~~~~~al~~al~~~-~~-~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~---~~~~~ 306 (2602)
...|++...++++.++++.. .. ++++..+++.++++++++.|.+ . |++++.++..+.+.++.+.++.. +..++
T Consensus 238 ~~~t~~~~~~~~l~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 315 (368)
T PRK13479 238 WRFTPPTHVVAAFYQALLELEEEGGVPARGARYANNQRTLVAGMRA-L-GFEPLLDAEIQSPIIVTFHAPADPAYDFKEF 315 (368)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHH-c-CCcccCCchhcCceEEEEECCCCCCcCHHHH
Confidence 22378889999999999854 33 4788889999999999999987 3 77776554434455566665532 45677
Q ss_pred HHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 307 LMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 307 ~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
...| +||.++++..+. .+++|++.+.+++++|+++++++|++.
T Consensus 316 ~~~L~~~gi~v~~g~~~~--------------------~~~iRis~~~~~t~edi~~~l~~L~~~ 360 (368)
T PRK13479 316 YERLKEQGFVIYPGKLTQ--------------------VDTFRIGCIGDVDAADIRRLVAAIAEA 360 (368)
T ss_pred HHHHHHCCEEEecCCCCC--------------------CCEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 7777 799998664221 267999987789999999999999964
|
|
| >PRK03080 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.8e-26 Score=290.60 Aligned_cols=325 Identities=13% Similarity=0.089 Sum_probs=245.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCC-CCcEEEeC-CHHHHHHHHHHhc
Q psy15216 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYAD-PREIIWTS-GATESNNLAIKGA 78 (2602)
Q Consensus 1 Ld~a~~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~-~~~Iv~t~-g~T~al~~~~~~l 78 (2602)
|+.+.++++|..|++++...+. ++.|+ +..+...++++|+.+++++|++ +++|+|++ |+|.+++.++.++
T Consensus 16 f~~Gp~~~~~~~v~~a~~~~~~---~~~hr-----~~~f~~~~~~~r~~l~~l~~~~~~~~v~~~~gs~T~~~~~~~~~l 87 (378)
T PRK03080 16 FSSGPCKKRPGWQLEALADALL---GRSHR-----QKPVKALLKRVIEGTRELLSLPEGYEVGIVPGSDTGAWEMALWSL 87 (378)
T ss_pred cCCCCcCCChHHHHHHHHhhhc---ccCcC-----CHHHHHHHHHHHHHHHHHhCCCCCceEEEECCchHHHHHHHHHhc
Confidence 3444444555549999886543 12233 3466789999999999999984 45788875 9999999999998
Q ss_pred ccccccC-CCEEEEcCCCCcccHHHHHHH-HhCCc-EEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccH
Q psy15216 79 AHFYKKR-GKHIITVQTEHKSVLDSIRKL-ENDGF-RVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPI 155 (2602)
Q Consensus 79 ~~~~~~~-gd~Vlv~~~~~~s~~~~~~~~-~~~G~-~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l 155 (2602)
. ++ ++.|+. ..+|++. +...+ ++.|+ +++.++.++++.+|+++++ . +++|+++|.+|.||.++|+
T Consensus 88 ~----~~~~~~vi~-~g~f~~~--~~~~~~~~~g~~~v~~~~~~~g~~~d~~~i~----~-~~~V~~~h~~t~tG~~~pi 155 (378)
T PRK03080 88 L----GARRVDHLA-WESFGSK--WATDVVKQLKLEDPRVLEADYGSLPDLSAVD----F-DRDVVFTWNGTTTGVRVPV 155 (378)
T ss_pred C----CCCcceEEE-eCHHHHH--HHHHHHhhcCCCCceEeccCCCCCCCHhhcC----C-CCCEEEEecCCccceeccc
Confidence 6 54 455555 5788883 33323 56788 9999988877778887744 2 6789999999999999999
Q ss_pred HHHHHHHHhcCCEEEEecccccccccccCCCCCccEEEecccccc-CCCCcEEEEEecCCCCcccceecCCCc-------
Q psy15216 156 LEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIY-GPKGIGALYIRRNPRTRIEAQIHGGGH------- 227 (2602)
Q Consensus 156 ~~I~~la~~~g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K~~-Gp~G~G~l~~~~~~~~~l~~~~~g~~~------- 227 (2602)
++|++ |++|+++++|++|++|..|+|+++ +|++++|+||++ ||+|+|++++++++++++.|...+|..
T Consensus 156 ~~I~~--~~~g~~~vVDa~qs~G~~pidv~~--iD~~~~s~~K~l~~P~G~g~l~v~~~~~~~~~p~~~~~~~~~~~~~~ 231 (378)
T PRK03080 156 ARWIG--ADREGLTICDATSAAFALPLDWSK--LDVYTFSWQKVLGGEGGHGMAILSPRAVERLESYTPARPIPKFFRLT 231 (378)
T ss_pred hhhcc--ccCCCeEEEecccccccCCCCHHH--CcEEEEehhhhCCCCCceEEEEECHHHHHhhhcccCCCCCchhheec
Confidence 99999 889999999999999999999986 699999999955 789999999999988887775444321
Q ss_pred ------ccccc---ccCcchhHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHhhccCceEEeCC-CCCCCCceEE
Q psy15216 228 ------EYGLR---SGTLATHQIVGMGEAFRLARI--EMKEELKRILFLQKRLYNGLMESIEEIYINGD-MNNRIPHNLN 295 (2602)
Q Consensus 228 ------~~~~~---~gt~~~~~~~al~~al~~~~~--~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~-~~~~~~~~~~ 295 (2602)
...++ .+|+++..++++.++|++..+ +++++.+|++++++++++.+.+ +++++++.+ +..+.+.++.
T Consensus 232 ~~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~-~~~~~~~~~~~~~~s~~i~~ 310 (378)
T PRK03080 232 KGGKAIENSFKGQTINTPSMLTVEDYLDQLDWANSIGGLDALIARTAANASVLYDWAEK-TPWATPLVADPATRSNTSVT 310 (378)
T ss_pred cchHHhhhhhcCCcccCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHh-CCCcccccCCccccCccEEE
Confidence 11233 346777778888999996654 6899999999999999999987 666777643 2333334455
Q ss_pred EEEcc---cChhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 296 ISFNF---IEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 296 ~~~~~---~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
|.++. ....++...+ ++|.++.|.++.. .+.+|+|++.|+|.+||++++++|++.
T Consensus 311 ~~~~~~~~~~~~~~~~~l~~~~i~v~~g~~~~~-------------------~~~vRis~~~~~t~~di~~l~~al~~~ 370 (378)
T PRK03080 311 LDFVDAQAAVDAAAVAKLLRENGAVDIEPYRDA-------------------PNGLRIWCGPTVEPADVEALTPWLDWA 370 (378)
T ss_pred EEcCCchHHHHHHHHHHHHHcCCeeccccccCC-------------------CCcEEEecCCCCCHHHHHHHHHHHHHH
Confidence 55554 1123344444 6888876654321 278999999999999999999999964
|
|
| >TIGR01364 serC_1 phosphoserine aminotransferase | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-25 Score=283.17 Aligned_cols=324 Identities=18% Similarity=0.155 Sum_probs=249.0
Q ss_pred CCCCHHHHHHHHHHHhhhcCCCCCCCcchhhh---HHHHHHHHHHHHHHHhCCCC-CcEEEeCC-HHHHHHHHHHhcccc
Q psy15216 7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWT---AEKAIEKARNEVAQLIYADP-REIIWTSG-ATESNNLAIKGAAHF 81 (2602)
Q Consensus 7 ~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~---~~~~~~~~r~~lA~~~g~~~-~~Iv~t~g-~T~al~~~~~~l~~~ 81 (2602)
++.|..|++++.+++.... +.+.+.+..+.. +...++++++.++++++++. .+|++++| +|.|++.++.++.
T Consensus 1 ~~~p~~v~~~~~~~~~~~~-~~~~~~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgT~a~ea~~~nl~-- 77 (349)
T TIGR01364 1 AALPEEVLEQAQKELLNFN-GTGMSVMEISHRSKEFEAVANEAESDLRELLNIPDNYEVLFLQGGATGQFAAVPLNLL-- 77 (349)
T ss_pred CCCCHHHHHHHHHHHhCcc-CCCccccccCCCchHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhcC--
Confidence 4678999999999988655 777766655543 34899999999999999843 46777755 9999999999998
Q ss_pred cccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCC----CCccChHHHHhhccCCceEEEEecccCcccccccHHH
Q psy15216 82 YKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN----NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILE 157 (2602)
Q Consensus 82 ~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~----~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~ 157 (2602)
.+|+.+++......+. ++.+.+++.|+ +..+..++ ...+++++++ +++++++|+++|..|+||..+|
T Consensus 78 --~~~~~~l~i~~G~fg~-r~~~~a~~~g~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~th~ETstGv~~~--- 148 (349)
T TIGR01364 78 --AEGKVADYIVTGAWSK-KAAKEAKKYGV-VNVVASGKEGNYTKIPDPSTWE--ISEDAAYVHYCANETIHGVEFR--- 148 (349)
T ss_pred --CCCCeEEEEECCHHHH-HHHHHHHHhCC-cEEEeccccCCCCCCCCHHhcC--CCCCCCEEEEcCCCCcccEecc---
Confidence 6899888877666663 56777788898 77776542 2345666665 4578999999999999999987
Q ss_pred HHHHHHhcCCEEEEecccccccccccCCCCCccEEEeccccccCCCCcEEEEEecCCCCcccceecCCCc-----ccccc
Q psy15216 158 IGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGH-----EYGLR 232 (2602)
Q Consensus 158 I~~la~~~g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K~~Gp~G~G~l~~~~~~~~~l~~~~~g~~~-----~~~~~ 232 (2602)
++++.++++++||+++++|+.|+|++++ |++++|.||++||+|+|++++++++++++.|....... .....
T Consensus 149 --~l~~~~~~l~iVDavss~g~~~id~~~~--d~~~~ssqK~lgP~Glg~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (349)
T TIGR01364 149 --ELPDVKNAPLVADMSSNILSRPIDVSKF--GLIYAGAQKNIGPAGLTVVIVRKDLLGRASRITPSMLNYKIHAENDSM 224 (349)
T ss_pred --eecccCCCeEEEEccccccCccCCHHHc--cEEEEecccccCCCceEEEEECHHHHhhcccCCCCcchHHHHHhcCCC
Confidence 7777889999999999999999999876 59999999988999999999999988777663321110 11233
Q ss_pred ccCcchhHHHHHHHHHHHHH-H-hHHHHHHHHHHHHHHHHHHHhhccCceEEeCC-CCCCCCceEEEEEcccC-hhHHHH
Q psy15216 233 SGTLATHQIVGMGEAFRLAR-I-EMKEELKRILFLQKRLYNGLMESIEEIYINGD-MNNRIPHNLNISFNFIE-GESLLM 308 (2602)
Q Consensus 233 ~gt~~~~~~~al~~al~~~~-~-~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~-~~~~~~~~~~~~~~~~~-~~~~~~ 308 (2602)
+||||+..++++.+||+++. + +++++.+|++++++++++.|++ ++|+..... +..+.+.++.|.++... ..+++.
T Consensus 225 ~~Tp~~~~i~al~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~-~~gl~~~~~~~~~rs~~v~sf~~~~~~~~~~~~~ 303 (349)
T TIGR01364 225 YNTPPTFAIYVSGLVFKWLKEQGGVKAIEKRNQAKAQLLYDTIDN-SNGFYRNPVDPRNRSRMNVVFTLGNEELEKRFLK 303 (349)
T ss_pred CCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHh-CCCeeccCCCHHHcCCeEEEEecCChhHhHHHHH
Confidence 58999999999999999655 5 6999999999999999999988 777655532 23344444555555331 133333
Q ss_pred Hh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 309 AI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 309 ~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
.+ +|+.+.++.. ..+.+|+|+++|||.+||++|+++|++
T Consensus 304 ~~~~~Gi~~~~~~~---------------------~~g~vRvS~~~~nt~edid~l~~al~~ 344 (349)
T TIGR01364 304 EAEERGLVSLKGHR---------------------SVGGMRASIYNAMPLEGVQALVDFMKE 344 (349)
T ss_pred HHHHCCCcccCCcc---------------------ccCeeEEECcCCCCHHHHHHHHHHHHH
Confidence 33 5554433321 126899999999999999999999996
|
This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266). |
| >PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-24 Score=282.29 Aligned_cols=305 Identities=15% Similarity=0.142 Sum_probs=240.8
Q ss_pred HHHHHHHHHHHHHHHHhCCCC--CcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEE
Q psy15216 1434 TAEKAIEKARNEVAQLIYADP--REIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTY 1511 (2602)
Q Consensus 1434 ~~~~~~~~lr~~ia~~~g~~~--~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~ 1511 (2602)
.+.+.+.++|+.+++++|+++ +.+++++|+|++++.++.++. .+||+|++..+.+++.. ....++..|++++.
T Consensus 34 ~~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~gt~~l~~~~~~l~----~~~~~vlv~~~~~~~~~-~~~~~~~~g~~~~~ 108 (368)
T PRK13479 34 DFNALTASVRAKLVAIATGEEGYTCVPLQGSGTFSVEAAIGSLV----PRDGKVLVPDNGAYGAR-IAQIAEYLGIAHVV 108 (368)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCceEEEEcCCcHHHHHHHHHhcc----CCCCeEEEEeCCchHHH-HHHHHHHcCCcEEE
Confidence 344678999999999999864 458899999999999999997 68899988877665542 23445667999999
Q ss_pred eccCCCCCcChhHHHhhccC--CceEEEEeccccccccccChHHHHHHhhhcCCEEEEecccccCcccccCCCCCccEEE
Q psy15216 1512 LKPKNNGLITLSQLEEKICS--DTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMS 1589 (2602)
Q Consensus 1512 v~~~~~~~id~d~l~~~i~~--~t~lv~l~~~~n~tG~~~~l~~I~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v 1589 (2602)
++.++++.+|++++++++++ ++++|+++|++||||.+.|+++|.++|++||+++++|++|++|..++++.++++|+++
T Consensus 109 i~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~~~~i~~l~~~~~~~livDa~~~~g~~~~~~~~~~~d~~v 188 (368)
T PRK13479 109 LDTGEDEPPDAAEVEAALAADPRITHVALVHCETTTGILNPLDEIAAVAKRHGKRLIVDAMSSFGAIPIDIAELGIDALI 188 (368)
T ss_pred EECCCCCCCCHHHHHHHHHhCCCCcEEEEEcccCccccccCHHHHHHHHHHcCCEEEEEcccccCCccccccccCceEEE
Confidence 99887788999999999964 4678999999999999999999999999999999999999999988999889999999
Q ss_pred Ecccc-ccCCCceEEEEEecCCCCccccccccCCc----------cccCCCCCcchhHHHHHHHHHHHH-HH-HHHHHHH
Q psy15216 1590 FSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGH----------EYGLRSGTLATHQIVGMGEAFRLA-RI-EMKEELK 1656 (2602)
Q Consensus 1590 ~S~~K-~~gp~G~G~l~~~~~~~~~l~~~~~g~~~----------~~~~~~gt~~~~~~~al~~aL~~~-~~-~~~~~~~ 1656 (2602)
+|+|| ++||+|+||++++++.++.+.+....+.. ..+....|++.+.++++.++++.+ .. ++++..+
T Consensus 189 ~s~~K~l~g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~l~~al~~l~~~~~~~~~~~ 268 (368)
T PRK13479 189 SSANKCIEGVPGFGFVIARRSELEACKGNSRSLSLDLYDQWAYMEKTGQWRFTPPTHVVAAFYQALLELEEEGGVPARGA 268 (368)
T ss_pred ecCccccccCCCceEEEECHHHHHHhhcCCCCeeecHHHHHhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHH
Confidence 99999 67999999999998776655432211100 001122378888999999999854 33 4788889
Q ss_pred HHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecC---CcHHHHHhc--CCEEEccccccCCCCCChhHHHHHc
Q psy15216 1657 RILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI---EGESLLMAI--KDIAVSSGSACTSASLEPSYVLRAL 1731 (2602)
Q Consensus 1657 ~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~ 1731 (2602)
++.++++++++.|.+ . |+.+..++....+....+.++.. +..++...| +||.+++|..+.
T Consensus 269 ~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~v~~g~~~~------------- 333 (368)
T PRK13479 269 RYANNQRTLVAGMRA-L-GFEPLLDAEIQSPIIVTFHAPADPAYDFKEFYERLKEQGFVIYPGKLTQ------------- 333 (368)
T ss_pred HHHHHHHHHHHHHHH-c-CCcccCCchhcCceEEEEECCCCCCcCHHHHHHHHHHCCEEEecCCCCC-------------
Confidence 999999999999987 3 77665444334455566665532 446676666 899998764321
Q ss_pred CCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1732 GCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1732 ~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
.+++|++++.++|.+|+++++++|++.
T Consensus 334 -------~~~iRis~~~~~t~edi~~~l~~L~~~ 360 (368)
T PRK13479 334 -------VDTFRIGCIGDVDAADIRRLVAAIAEA 360 (368)
T ss_pred -------CCEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 167999988899999999999999974
|
|
| >PRK02769 histidine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-24 Score=274.04 Aligned_cols=319 Identities=20% Similarity=0.223 Sum_probs=252.0
Q ss_pred CCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCc--EEEeCCHHHHHHHHHHhhhhhhccCC
Q psy15216 1405 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE--IIWTSGATESNNLAIKGAAHFYKKRG 1482 (2602)
Q Consensus 1405 ~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~--iv~t~gaT~al~~al~~l~~~~~~~g 1482 (2602)
.+...++.+..+..+.++||.+ .+.++.......+++++++++++|+++++ .+||+|+|+++..++.+... +.++
T Consensus 34 ~~~~~~~~~~~~~~~n~gnp~~-~~~~g~~~~~~e~~~~~~~a~l~g~~~~~~~G~~TsGgTean~~a~~~ar~--~~~~ 110 (380)
T PRK02769 34 FDYSALKRFFSFSINNCGDPYS-KSNYPLNSFDFERDVMNFFAELFKIPFNESWGYITNGGTEGNLYGCYLARE--LFPD 110 (380)
T ss_pred cCHHHHHHHHHhhhccCCCccc-cCCCCCChHHHHHHHHHHHHHHhCCCCCCCCEEEecChHHHHHHHHHHHHH--hCCC
Confidence 3345566666777667788876 56556666778899999999999997665 48999999998887766542 3578
Q ss_pred CEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccCC---ceEEEEeccccccccccChHHHHHHhh
Q psy15216 1483 KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSD---TILVSVMLVNNEIGVIQPILEIGELCR 1559 (2602)
Q Consensus 1483 d~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~~---t~lv~l~~~~n~tG~~~~l~~I~~ia~ 1559 (2602)
++|++++.+|+|+..+++.+ |...+.|+.++++.+|+++|+++|+++ |.+|++++++|+||.+.|+++|+++|+
T Consensus 111 ~~ii~s~~~H~Sv~ka~~~l---g~~~~~V~~~~~g~id~~~L~~~i~~~~~~t~lvv~t~gtt~tG~idpi~~I~~i~~ 187 (380)
T PRK02769 111 GTLYYSKDTHYSVSKIARLL---RIKSRVITSLPNGEIDYDDLISKIKENKNQPPIIFANIGTTMTGAIDNIKEIQEILK 187 (380)
T ss_pred cEEEeCCCceehHHHHHHHc---CCCCceeccCCCCcCcHHHHHHHHHhCCCCcEEEEEEeCCCCCcccCCHHHHHHHHH
Confidence 99999999999999888777 777778888888999999999999876 999999999999999999999999999
Q ss_pred hcC---CEEEEecccccCccc-------ccCCCCCccEEEEccccccC-CCceEEEEEecCCCCccccccccCCccccCC
Q psy15216 1560 SKG---VIFHCDAAQAVGKID-------INIQNYKVDLMSFSAHKIYG-PKGIGALYIRRNPRTRIEAQIHGGGHEYGLR 1628 (2602)
Q Consensus 1560 ~~g---i~vivD~a~~~g~~~-------~~l~~~~~D~~v~S~~K~~g-p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~ 1628 (2602)
+|| +|+++|+||+.+..| +++.. ++|++++|+||++| |.|+|+++++++....+.+....-.......
T Consensus 188 ~~g~~~~~lHVDaA~gg~~~p~~~~~~~~d~~~-~vDsis~s~HK~~~~P~g~G~l~~r~~~~~~~~~~~~yl~~~d~t~ 266 (380)
T PRK02769 188 KIGIDDYYIHADAALSGMILPFVNNPPPFSFAD-GIDSIAISGHKFIGSPMPCGIVLAKKKYVERISVDVDYIGSRDQTI 266 (380)
T ss_pred HhCCCceEEEEEecccceeecccCccccCCccC-CCCEEEECCcccCCCCCCcEEEEEehhhhhhcccCccccCCCCCCc
Confidence 998 699999999998875 66666 89999999999765 9999999999876665543111001122344
Q ss_pred CCCcchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecCCcHHHHHhcC
Q psy15216 1629 SGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK 1707 (2602)
Q Consensus 1629 ~gt~~~~~~~al~~aL~-~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 1707 (2602)
.||.+....+++.++|+ +...+++++.++..++++++.++|.+ .++.++.. |...++.|+..+ +++. +
T Consensus 267 ~GSR~g~~~l~lw~aL~~lg~~G~~~~~~~~~~la~~l~~~L~~--~g~~~~~~-----p~~~~v~f~~~~-~~~~---~ 335 (380)
T PRK02769 267 SGSRNGHTALLLWAAIRSLGSKGLRQRVQHCLDMAQYAVDRLQA--NGIPAWRN-----PNSITVVFPCPS-ERIW---K 335 (380)
T ss_pred cCCCCcHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHh--CCCEEEcC-----CCceEEEEcCCC-HHHH---h
Confidence 78999888899999999 55678999999999999999999987 58877754 334456665433 2322 3
Q ss_pred CEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1708 DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1708 gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
+..+.+- .+++|+.+.+..|.+.+|.+++-|.++
T Consensus 336 ~w~l~~~------------------------~~~~hi~~~~~~~~~~~~~f~~dl~~~ 369 (380)
T PRK02769 336 KWHLATS------------------------GNQAHIITMPHHNKQQIDSLIDELIFD 369 (380)
T ss_pred CeeEccc------------------------CCEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 4333210 157999999999999999999998874
|
|
| >PRK03080 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.7e-25 Score=283.83 Aligned_cols=327 Identities=13% Similarity=0.099 Sum_probs=245.2
Q ss_pred eeccCCCCCCCHH-HHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCC-CCcEEEeC-CHHHHHHHHHH
Q psy15216 1396 IVFKDATTPIDPR-VVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYAD-PREIIWTS-GATESNNLAIK 1472 (2602)
Q Consensus 1396 v~L~~~~~~~~~~-v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~-~~~iv~t~-gaT~al~~al~ 1472 (2602)
++++.+.+..++. +++++.+..- ++.|+ +..+.+.++++|+.+++++|++ +++|+|++ |+|.+++.++.
T Consensus 14 ~~f~~Gp~~~~~~~v~~a~~~~~~---~~~hr-----~~~f~~~~~~~r~~l~~l~~~~~~~~v~~~~gs~T~~~~~~~~ 85 (378)
T PRK03080 14 PRFSSGPCKKRPGWQLEALADALL---GRSHR-----QKPVKALLKRVIEGTRELLSLPEGYEVGIVPGSDTGAWEMALW 85 (378)
T ss_pred CCcCCCCcCCChHHHHHHHHhhhc---ccCcC-----CHHHHHHHHHHHHHHHHHhCCCCCceEEEECCchHHHHHHHHH
Confidence 4566666677777 9999886542 22233 4567889999999999999984 45788875 99999999999
Q ss_pred hhhhhhccC-CCEEEEcCCCCcchHHHHHHHHhCCc-EEEEeccCCCCCcChhHHHhhccCCceEEEEeccccccccccC
Q psy15216 1473 GAAHFYKKR-GKHIITVQTEHKSVLDSIRKLENDGF-RVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP 1550 (2602)
Q Consensus 1473 ~l~~~~~~~-gd~Vlv~~~~~~s~~~~~~~~~~~G~-~v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~ 1550 (2602)
++. ++ ++.|+. +.+|++.... ...++.|+ +++.++.++++.+|+++++. +++|+++|.+|.||.++|
T Consensus 86 ~l~----~~~~~~vi~-~g~f~~~~~~-~~~~~~g~~~v~~~~~~~g~~~d~~~i~~-----~~~V~~~h~~t~tG~~~p 154 (378)
T PRK03080 86 SLL----GARRVDHLA-WESFGSKWAT-DVVKQLKLEDPRVLEADYGSLPDLSAVDF-----DRDVVFTWNGTTTGVRVP 154 (378)
T ss_pred hcC----CCCcceEEE-eCHHHHHHHH-HHHhhcCCCCceEeccCCCCCCCHhhcCC-----CCCEEEEecCCccceecc
Confidence 986 54 555555 5678774221 12245688 99999888777788877442 678999999999999999
Q ss_pred hHHHHHHhhhcCCEEEEecccccCcccccCCCCCccEEEEcccc-ccCCCceEEEEEecCCCCccccccccCCc------
Q psy15216 1551 ILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGH------ 1623 (2602)
Q Consensus 1551 l~~I~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K-~~gp~G~G~l~~~~~~~~~l~~~~~g~~~------ 1623 (2602)
+++|++ |+||+++++|++|++|+.++++.+ +|++++|+|| ++||+|+|+++++++.++++.|...+|..
T Consensus 155 i~~I~~--~~~g~~~vVDa~qs~G~~pidv~~--iD~~~~s~~K~l~~P~G~g~l~v~~~~~~~~~p~~~~~~~~~~~~~ 230 (378)
T PRK03080 155 VARWIG--ADREGLTICDATSAAFALPLDWSK--LDVYTFSWQKVLGGEGGHGMAILSPRAVERLESYTPARPIPKFFRL 230 (378)
T ss_pred chhhcc--ccCCCeEEEecccccccCCCCHHH--CcEEEEehhhhCCCCCceEEEEECHHHHHhhhcccCCCCCchhhee
Confidence 999999 889999999999999999999986 6999999999 55789999999999888777664433311
Q ss_pred -------cccCC---CCCcchhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCC-CCCCCCceE
Q psy15216 1624 -------EYGLR---SGTLATHQIVGMGEAFRLARI--EMKEELKRILFLQKRLYNGLMESIEEIYINGD-MNNRIPHNL 1690 (2602)
Q Consensus 1624 -------~~~~~---~gt~~~~~~~al~~aL~~~~~--~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~-~~~~~~~~~ 1690 (2602)
...++ .+|+++..++++.++|+++.. +++++.+|++++.+++++.|.+ ++++.++.+ +..+.+.+.
T Consensus 231 ~~~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~-~~~~~~~~~~~~~~s~~i~ 309 (378)
T PRK03080 231 TKGGKAIENSFKGQTINTPSMLTVEDYLDQLDWANSIGGLDALIARTAANASVLYDWAEK-TPWATPLVADPATRSNTSV 309 (378)
T ss_pred ccchHHhhhhhcCCcccCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHh-CCCcccccCCccccCccEE
Confidence 11233 346777788888999996654 6899999999999999999987 666666643 222333344
Q ss_pred EEEEec---CCcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1691 NISFNF---IEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1691 ~~~~~~---~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
.|.++. ....++...| ++|.++.|.++.. .+.+|+|++.|||.+||++++++|++.
T Consensus 310 ~~~~~~~~~~~~~~~~~~l~~~~i~v~~g~~~~~-------------------~~~vRis~~~~~t~~di~~l~~al~~~ 370 (378)
T PRK03080 310 TLDFVDAQAAVDAAAVAKLLRENGAVDIEPYRDA-------------------PNGLRIWCGPTVEPADVEALTPWLDWA 370 (378)
T ss_pred EEEcCCchHHHHHHHHHHHHHcCCeeccccccCC-------------------CCcEEEecCCCCCHHHHHHHHHHHHHH
Confidence 454443 1122344344 6788776654321 268999999999999999999999974
|
|
| >TIGR01364 serC_1 phosphoserine aminotransferase | Back alignment and domain information |
|---|
Probab=99.93 E-value=5e-25 Score=278.21 Aligned_cols=323 Identities=18% Similarity=0.149 Sum_probs=246.4
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCccchh---HHHHHHHHHHHHHHHHHHhCCC-CCcEEEeCC-HHHHHHHHHHhhhhhh
Q psy15216 1404 PIDPRVVDKMIPYLRVQFGNPASRNHIY---GWTAEKAIEKARNEVAQLIYAD-PREIIWTSG-ATESNNLAIKGAAHFY 1478 (2602)
Q Consensus 1404 ~~~~~v~eal~~~l~~~~~np~~~~~~~---~~~~~~~~~~lr~~ia~~~g~~-~~~iv~t~g-aT~al~~al~~l~~~~ 1478 (2602)
..|..+++++.+++.... +.+.+.+.. +..+.+.++++|+.++++++++ ..+++|++| +|.|++.++.++.
T Consensus 2 ~~p~~v~~~~~~~~~~~~-~~~~~~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgT~a~ea~~~nl~--- 77 (349)
T TIGR01364 2 ALPEEVLEQAQKELLNFN-GTGMSVMEISHRSKEFEAVANEAESDLRELLNIPDNYEVLFLQGGATGQFAAVPLNLL--- 77 (349)
T ss_pred CCCHHHHHHHHHHHhCcc-CCCccccccCCCchHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhcC---
Confidence 568899999999987644 666655543 4555689999999999999973 346877765 9999999999997
Q ss_pred ccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCC----CCCcChhHHHhhccCCceEEEEeccccccccccChHHH
Q psy15216 1479 KKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN----NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEI 1554 (2602)
Q Consensus 1479 ~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~----~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I 1554 (2602)
.+|+++++......+.. +.+.+++.|+ +..+..++ ...+++++++ +++++++|.++|.+|.||..+|
T Consensus 78 -~~~~~~l~i~~G~fg~r-~~~~a~~~g~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~th~ETstGv~~~---- 148 (349)
T TIGR01364 78 -AEGKVADYIVTGAWSKK-AAKEAKKYGV-VNVVASGKEGNYTKIPDPSTWE--ISEDAAYVHYCANETIHGVEFR---- 148 (349)
T ss_pred -CCCCeEEEEECCHHHHH-HHHHHHHhCC-cEEEeccccCCCCCCCCHHhcC--CCCCCCEEEEcCCCCcccEecc----
Confidence 68999888877776643 4666777788 77776542 2346666665 4678999999999999999987
Q ss_pred HHHhhhcCCEEEEecccccCcccccCCCCCccEEEEccccccCCCceEEEEEecCCCCccccccccCCc-----cccCCC
Q psy15216 1555 GELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGH-----EYGLRS 1629 (2602)
Q Consensus 1555 ~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K~~gp~G~G~l~~~~~~~~~l~~~~~g~~~-----~~~~~~ 1629 (2602)
++++.++++++||+++++|+.++++.++ |++++|+||++||+|+|++++++++++++.+....... .....+
T Consensus 149 -~l~~~~~~l~iVDavss~g~~~id~~~~--d~~~~ssqK~lgP~Glg~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (349)
T TIGR01364 149 -ELPDVKNAPLVADMSSNILSRPIDVSKF--GLIYAGAQKNIGPAGLTVVIVRKDLLGRASRITPSMLNYKIHAENDSMY 225 (349)
T ss_pred -eecccCCCeEEEEccccccCccCCHHHc--cEEEEecccccCCCceEEEEECHHHHhhcccCCCCcchHHHHHhcCCCC
Confidence 6777789999999999999999999876 59999999988999999999999887766553222111 112345
Q ss_pred CCcchhHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCC-CCCCCCceEEEEEecCC-cHHHHHh
Q psy15216 1630 GTLATHQIVGMGEAFRLAR-I-EMKEELKRILFLQKRLYNGLMESIEEIYINGD-MNNRIPHNLNISFNFIE-GESLLMA 1705 (2602)
Q Consensus 1630 gt~~~~~~~al~~aL~~~~-~-~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~-~~~~~~~~~~~~~~~~~-~~~~~~~ 1705 (2602)
|||+++.++++.++|+++. . +++++.+|++++++++++.|.+ ++|+..... +..+.+..+.|.++... ..+++..
T Consensus 226 ~Tp~~~~i~al~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~-~~gl~~~~~~~~~rs~~v~sf~~~~~~~~~~~~~~ 304 (349)
T TIGR01364 226 NTPPTFAIYVSGLVFKWLKEQGGVKAIEKRNQAKAQLLYDTIDN-SNGFYRNPVDPRNRSRMNVVFTLGNEELEKRFLKE 304 (349)
T ss_pred CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHh-CCCeeccCCCHHHcCCeEEEEecCChhHhHHHHHH
Confidence 8999999999999999665 4 5999999999999999999998 777655532 22344444555555321 1333333
Q ss_pred c--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1706 I--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1706 L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
+ +|+.+.+|.. ..+.+|+|++.|||.+||++++++|++
T Consensus 305 ~~~~Gi~~~~~~~---------------------~~g~vRvS~~~~nt~edid~l~~al~~ 344 (349)
T TIGR01364 305 AEERGLVSLKGHR---------------------SVGGMRASIYNAMPLEGVQALVDFMKE 344 (349)
T ss_pred HHHCCCcccCCcc---------------------ccCeeEEECcCCCCHHHHHHHHHHHHH
Confidence 3 5664443332 026899999999999999999999997
|
This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266). |
| >PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5e-25 Score=279.81 Aligned_cols=332 Identities=15% Similarity=0.110 Sum_probs=247.3
Q ss_pred CCCCCCCCHHHHHHHHHHHhhhcCCCCCCCcchh---hhHHHHHHHHHHHHHHHhCCCC-Cc-EEEeCCHHHHHHHHHHh
Q psy15216 3 YSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYG---WTAEKAIEKARNEVAQLIYADP-RE-IIWTSGATESNNLAIKG 77 (2602)
Q Consensus 3 ~a~~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~---~~~~~~~~~~r~~lA~~~g~~~-~~-Iv~t~g~T~al~~~~~~ 77 (2602)
+++.++.|+.|++++...+.+.. +.+.+.+..+ ..+.+.++++++.+++++|++. .+ +++++++|.|++.++.+
T Consensus 8 ~pGP~~~p~~V~~a~~~~~~~~~-~~~~g~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgt~~~Ea~~~n 86 (360)
T PRK05355 8 SAGPAMLPEEVLEQAQQELLDWN-GSGMSVMEISHRSKEFEAVAEEAEADLRELLNIPDNYKVLFLQGGASLQFAMVPMN 86 (360)
T ss_pred cCCCCCCCHHHHHHHHHHhhccc-cCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCchHHHHHHHHh
Confidence 46677999999999999886543 4444444333 3445899999999999999833 34 56668899999999999
Q ss_pred cccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCC-CCccChHHHHh-hccCCceEEEEecccCcccccc-c
Q psy15216 78 AAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NGLITLSQLEE-KICSDTILVSVMLVNNEIGVIQ-P 154 (2602)
Q Consensus 78 l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~-~~~ld~e~l~~-~i~~~tklv~i~~~~npTG~~~-~ 154 (2602)
+. .+|+.+++......+. ++.+.+++.|.. ..+..++ .+..+..++++ .+++++++|+++|..|+||.++ |
T Consensus 87 l~----~~g~~~l~i~~G~fg~-r~~~~a~~~g~~-~~~~~~~~~g~~~~~~~~~~~l~~~~~~V~~th~eTstGv~~~~ 160 (360)
T PRK05355 87 LL----GGGKKADYVDTGSWSK-KAIKEAKKYGEV-NVAASSEDDGFTYIPPLDEWQLSDDAAYVHYTSNETIDGTEFHE 160 (360)
T ss_pred cC----CCCCeEEEEECCHHHH-HHHHHHHHhCCc-eEEecccccCCCCCCChhhccCCCCCCEEEEccCCCcceEecCc
Confidence 98 7888888776665553 456777787865 6665554 45556555555 7888899999999999999998 6
Q ss_pred HHHHHHHHHhcCCEEEEecccccccccccCCCCCccEEEeccccccCCCCcEEEEEecCCCCcccceecCCC-----ccc
Q psy15216 155 ILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGG-----HEY 229 (2602)
Q Consensus 155 l~~I~~la~~~g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K~~Gp~G~G~l~~~~~~~~~l~~~~~g~~-----~~~ 229 (2602)
+.+| +|++++||+++++|+.++|++++ |++++|.||++||+|+|++++++++.+++.|...++. ...
T Consensus 161 i~~i------~g~l~vVDavss~g~~~idv~~~--d~~~~ssqK~lgP~Glg~l~~s~~~l~~~~~~~~~~~~~~~~~~~ 232 (360)
T PRK05355 161 LPDT------GDVPLVADMSSDILSRPIDVSKF--GLIYAGAQKNIGPAGLTIVIVREDLLGRALPSIPSMLDYKTHADN 232 (360)
T ss_pred cccc------CCCcEEEEcCccccCccCCHHHc--cEEEEeccccccCCceEEEEECHHHHhhcccCCChHHHHHHHHhc
Confidence 7766 89999999999999999999987 5999999998899999999999998888776421110 112
Q ss_pred cccccCcchhHHHHHHHHHHHHH-H-hHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEccc-ChhHH
Q psy15216 230 GLRSGTLATHQIVGMGEAFRLAR-I-EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI-EGESL 306 (2602)
Q Consensus 230 ~~~~gt~~~~~~~al~~al~~~~-~-~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~-~~~~~ 306 (2602)
...++|||+..++++.++|++.. . +++++.+|++++++++++.|++ ++.+..+.++..+.+.++.|.++.. ...++
T Consensus 233 ~~~~~Tp~~~~i~aL~~aL~~i~~~gG~e~i~~r~~~l~~~l~~~l~~-~~~~~~~~~~~~rs~~v~sf~~~~~~~~~~~ 311 (360)
T PRK05355 233 DSMYNTPPTFAIYLAGLVFKWLKEQGGVAAMEKRNQEKAALLYDAIDS-SDFYRNPVAPEDRSRMNVPFTLADEELDKKF 311 (360)
T ss_pred CCccCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHh-CCCcccCCChhhcCCcEEEEEcCChHHHHHH
Confidence 23468999999999999999654 5 6999999999999999999988 5532333332334445555555543 22333
Q ss_pred HHHhCCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 307 LMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 307 ~~~L~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
+..+ .+.|..|..++. ..+.+|+|+++|||.+||++|+++|++.
T Consensus 312 ~~~~----~~~Gi~~~~~~~---------------~~g~vRiS~~~~nt~eei~~l~~~l~~~ 355 (360)
T PRK05355 312 LAEA----KAAGLVGLKGHR---------------SVGGMRASIYNAMPLEGVQALVDFMKEF 355 (360)
T ss_pred HHHH----HHCCCcccCCCC---------------ccCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3333 333444422210 1278999999999999999999999973
|
|
| >PRK02769 histidine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.8e-24 Score=272.43 Aligned_cols=318 Identities=20% Similarity=0.209 Sum_probs=250.0
Q ss_pred CHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCc--EEEeCCHHHHHHHHHHhcccccccCCC
Q psy15216 10 DPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE--IIWTSGATESNNLAIKGAAHFYKKRGK 87 (2602)
Q Consensus 10 p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~--Iv~t~g~T~al~~~~~~l~~~~~~~gd 87 (2602)
+...++.+..+....++||.. .+.++.......+++++++++++|+++++ .+||+|+|+++..++.+... +.+++
T Consensus 35 ~~~~~~~~~~~~~~n~gnp~~-~~~~g~~~~~~e~~~~~~~a~l~g~~~~~~~G~~TsGgTean~~a~~~ar~--~~~~~ 111 (380)
T PRK02769 35 DYSALKRFFSFSINNCGDPYS-KSNYPLNSFDFERDVMNFFAELFKIPFNESWGYITNGGTEGNLYGCYLARE--LFPDG 111 (380)
T ss_pred CHHHHHHHHHhhhccCCCccc-cCCCCCChHHHHHHHHHHHHHHhCCCCCCCCEEEecChHHHHHHHHHHHHH--hCCCc
Confidence 345566666666555678866 55556667788999999999999997655 48999999998877766542 35789
Q ss_pred EEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccCC---ceEEEEecccCcccccccHHHHHHHHHh
Q psy15216 88 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSD---TILVSVMLVNNEIGVIQPILEIGELCRS 164 (2602)
Q Consensus 88 ~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~~---tklv~i~~~~npTG~~~~l~~I~~la~~ 164 (2602)
+|++++.+|+|+..+++.+ |...+.+++++++.+|+++|+++++++ |.+|++++++|+||.+.|+++|+++|++
T Consensus 112 ~ii~s~~~H~Sv~ka~~~l---g~~~~~V~~~~~g~id~~~L~~~i~~~~~~t~lvv~t~gtt~tG~idpi~~I~~i~~~ 188 (380)
T PRK02769 112 TLYYSKDTHYSVSKIARLL---RIKSRVITSLPNGEIDYDDLISKIKENKNQPPIIFANIGTTMTGAIDNIKEIQEILKK 188 (380)
T ss_pred EEEeCCCceehHHHHHHHc---CCCCceeccCCCCcCcHHHHHHHHHhCCCCcEEEEEEeCCCCCcccCCHHHHHHHHHH
Confidence 9999999999999998877 777778888888999999999999876 9999999999999999999999999999
Q ss_pred cC---CEEEEeccccccccc-------ccCCCCCccEEEeccccccC-CCCcEEEEEecCCCCcccceecCCCccccccc
Q psy15216 165 KG---VIFHCDAAQAVGKID-------INIQNYKVDLMSFSAHKIYG-PKGIGALYIRRNPRTRIEAQIHGGGHEYGLRS 233 (2602)
Q Consensus 165 ~g---~~livD~a~a~g~~~-------~dl~~~~~D~~~~S~~K~~G-p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~ 233 (2602)
|| +++|+|+||+.+..| +++.. ++|++++|+||++| |.|+|+++++++....+.+....-........
T Consensus 189 ~g~~~~~lHVDaA~gg~~~p~~~~~~~~d~~~-~vDsis~s~HK~~~~P~g~G~l~~r~~~~~~~~~~~~yl~~~d~t~~ 267 (380)
T PRK02769 189 IGIDDYYIHADAALSGMILPFVNNPPPFSFAD-GIDSIAISGHKFIGSPMPCGIVLAKKKYVERISVDVDYIGSRDQTIS 267 (380)
T ss_pred hCCCceEEEEEecccceeecccCccccCCccC-CCCEEEECCcccCCCCCCcEEEEEehhhhhhcccCccccCCCCCCcc
Confidence 98 699999999998875 66666 89999999999766 99999999998776655432111111222347
Q ss_pred cCcchhHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcccChhHHHHHhCC
Q psy15216 234 GTLATHQIVGMGEAFRL-ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIKD 312 (2602)
Q Consensus 234 gt~~~~~~~al~~al~~-~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~g 312 (2602)
||.+....+++.++|++ ...+++++.++..++++++.++|++ .|++++..+. ..++.|...+ +.+. ++
T Consensus 268 GSR~g~~~l~lw~aL~~lg~~G~~~~~~~~~~la~~l~~~L~~--~g~~~~~~p~-----~~~v~f~~~~-~~~~---~~ 336 (380)
T PRK02769 268 GSRNGHTALLLWAAIRSLGSKGLRQRVQHCLDMAQYAVDRLQA--NGIPAWRNPN-----SITVVFPCPS-ERIW---KK 336 (380)
T ss_pred CCCCcHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHh--CCCEEEcCCC-----ceEEEEcCCC-HHHH---hC
Confidence 89998889999999994 4577999999999999999999977 5888775433 3345555333 2222 34
Q ss_pred eEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 313 IAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 313 I~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
..+.+- .+++|+.+.+..|.+.+|.+++-|.+.
T Consensus 337 w~l~~~------------------------~~~~hi~~~~~~~~~~~~~f~~dl~~~ 369 (380)
T PRK02769 337 WHLATS------------------------GNQAHIITMPHHNKQQIDSLIDELIFD 369 (380)
T ss_pred eeEccc------------------------CCEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 433211 157999999999999999999999864
|
|
| >TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.2e-24 Score=279.11 Aligned_cols=301 Identities=17% Similarity=0.197 Sum_probs=233.3
Q ss_pred HHHHHHHHHHHHHHhCCCCC--cEEEeCCHHHHHHHHHHhcccccccCCCEEEE-cCCCCcccHHHHHHHHhCCcEEEEe
Q psy15216 40 EKAIEKARNEVAQLIYADPR--EIIWTSGATESNNLAIKGAAHFYKKRGKHIIT-VQTEHKSVLDSIRKLENDGFRVTYL 116 (2602)
Q Consensus 40 ~~~~~~~r~~lA~~~g~~~~--~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv-~~~~~~s~~~~~~~~~~~G~~v~~v 116 (2602)
.+.++++|+.+++++|++++ .|++++|+|+++..++.++. .+||.+++ .++.|++. ....++..|++++.+
T Consensus 30 ~~~~~~~~~~la~~~~~~~~~~~i~~~~~gt~~l~~~~~~~~----~~~~~vi~~~~~~~~~~--~~~~a~~~g~~~~~i 103 (355)
T TIGR03301 30 NDVTDQVRDRLLALAGGDDNHTCVLLQGSGTFAVEATIGSLV----PRDGKLLVLINGAYGER--LAKICEYLGIPHTDL 103 (355)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcEEEEeCCcHHHHHHHHHhcc----CCCCeEEEECCCchhhH--HHHHHHHcCCceEEE
Confidence 46789999999999999765 57889999999999999987 56776554 44455442 223334569999999
Q ss_pred ccCCCCccChHHHHhhccC--CceEEEEecccCcccccccHHHHHHHHHhcCCEEEEecccccccccccCCCCCccEEEe
Q psy15216 117 KPKNNGLITLSQLEEKICS--DTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSF 194 (2602)
Q Consensus 117 ~~~~~~~ld~e~l~~~i~~--~tklv~i~~~~npTG~~~~l~~I~~la~~~g~~livD~a~a~g~~~~dl~~~~~D~~~~ 194 (2602)
+.++++.+|++++++.+++ ++++++++|++|+||.+.|+++|+++|++||+++++|++|++|..++++..+++|++++
T Consensus 104 ~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~~G~~~~~~~i~~l~~~~~~~livD~~~s~g~~~~~~~~~~~d~~~~ 183 (355)
T TIGR03301 104 NFSEYEPPDLNRIEEALAADPDITHVATVHHETTTGILNPLEAIAKVARSHGAVLIVDAMSSFGAIPIDIEELDVDALIA 183 (355)
T ss_pred ecCCCCCCCHHHHHHHHHhCCCceEEEEEecCCcccchhHHHHHHHHHHHcCCEEEEEeccccCCcccchhhcCccEEEe
Confidence 9887788999999999964 56788899999999999999999999999999999999999998888888889999999
Q ss_pred cccc-ccCCCCcEEEEEecCCCCcccceecCCCc----------cccccccCcchhHHHHHHHHHHHH-HHh-HHHHHHH
Q psy15216 195 SAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGH----------EYGLRSGTLATHQIVGMGEAFRLA-RIE-MKEELKR 261 (2602)
Q Consensus 195 S~~K-~~Gp~G~G~l~~~~~~~~~l~~~~~g~~~----------~~~~~~gt~~~~~~~al~~al~~~-~~~-~~~~~~~ 261 (2602)
|+|| ++|++|+|++++++++++.+......... ..+...++++...++++.++++.. ..+ +++..++
T Consensus 184 s~~K~l~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~ 263 (355)
T TIGR03301 184 SANKCLEGVPGFGFVIARRDLLEASAGNARSLYLDLYDQWAYMEKTGKWRFTPPTHTVYAFAQALEELEAEGGVPARIAR 263 (355)
T ss_pred cCCcccccCCceeEEEECHHHHHHhhCCCCCceeeHHHHHHHhhhcCCCCCCCcHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 9999 56899999999999876655421111000 011234578889999999999854 344 7888999
Q ss_pred HHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc---cChhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcC
Q psy15216 262 ILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF---IEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALG 336 (2602)
Q Consensus 262 ~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g 336 (2602)
++++++++.+.|.+ .|+++..++....+..+.+.++. .+..++...| +||.++++..+.
T Consensus 264 ~~~~~~~~~~~L~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~i~~~~~~~-------------- 327 (355)
T TIGR03301 264 YRRNRELLVDGLRA--LGFQPLLPERWQSPIIVSFLYPDDPDFDFDDFYQELKERGFVIYPGKLTL-------------- 327 (355)
T ss_pred HHHHHHHHHHHHHH--cCCeeecCCCCCCCcEEEEECCCCCcchHHHHHHHHHHCCEEEECCcccc--------------
Confidence 99999999999977 37776654433323334444443 2345666666 799998764321
Q ss_pred CCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 337 CNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 337 ~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
.++|||+++.+++.+|+++++++|++
T Consensus 328 ------~~~iRis~~~~~~~~~i~~~~~~l~~ 353 (355)
T TIGR03301 328 ------ADTFRIGTIGEIDAADIERLLEAIKD 353 (355)
T ss_pred ------ccEEEEecCCCCCHHHHHHHHHHHHh
Confidence 16899999999999999999999985
|
This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different. |
| >COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3e-24 Score=273.95 Aligned_cols=319 Identities=18% Similarity=0.163 Sum_probs=237.6
Q ss_pred CCCHHHHHHHHHHHhhhc--CCCCCCCcchhhhHHHHHHHHHHHHHHHhCC--CCCc-EEEeCCHHHHHHHHHHhccccc
Q psy15216 8 PIDPRVVDKMIPYLRVQF--GNPASRNHIYGWTAEKAIEKARNEVAQLIYA--DPRE-IIWTSGATESNNLAIKGAAHFY 82 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~--~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~--~~~~-Iv~t~g~T~al~~~~~~l~~~~ 82 (2602)
++|+.+.+++.+++.... .+|.. ....+.+.+.+++.+.+|. ++++ |++|+|+++||..++.++.
T Consensus 41 ~~p~~i~~a~~~a~~~~~~~Y~~~~-------G~~~LReaia~~~~~~~~~~~~~~~eiivt~Ga~~al~~~~~a~~--- 110 (393)
T COG0436 41 PTPEHIIEAAIEALEEGGTHYTPSA-------GIPELREAIAEKYKRRYGLDVDPEEEIIVTAGAKEALFLAFLALL--- 110 (393)
T ss_pred CCCHHHHHHHHHHHhcccCCCCCCC-------CCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCCHHHHHHHHHHHhc---
Confidence 678889999999887531 11221 2223444444444455553 5555 9999999999999999998
Q ss_pred ccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccC---CCCccChHHHHhhccCCceEEEEecccCccccccc---HH
Q psy15216 83 KKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK---NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---IL 156 (2602)
Q Consensus 83 ~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~---~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~---l~ 156 (2602)
+|||+|++++|.|++|......+ |++++.++++ .++.+|+++|+++++++||++++++||||||.+++ ++
T Consensus 111 -~pGDeVlip~P~Y~~y~~~~~~~---gg~~v~v~l~~~~~~f~~d~~~l~~~i~~ktk~i~ln~P~NPTGav~~~~~l~ 186 (393)
T COG0436 111 -NPGDEVLIPDPGYPSYEAAVKLA---GGKPVPVPLDEEENGFKPDLEDLEAAITPKTKAIILNSPNNPTGAVYSKEELK 186 (393)
T ss_pred -CCCCEEEEeCCCCcCHHHHHHhc---CCEEEEEeCCcCccCCcCCHHHHHhhcCccceEEEEeCCCCCcCcCCCHHHHH
Confidence 89999999999999999988888 9999999974 37889999999999999999999999999999998 67
Q ss_pred HHHHHHHhcCCEEEEeccccc----ccccc---cCCC-CCccEEEeccccccCCCC--cEEEEEe-cCCCCcccceecCC
Q psy15216 157 EIGELCRSKGVIFHCDAAQAV----GKIDI---NIQN-YKVDLMSFSAHKIYGPKG--IGALYIR-RNPRTRIEAQIHGG 225 (2602)
Q Consensus 157 ~I~~la~~~g~~livD~a~a~----g~~~~---dl~~-~~~D~~~~S~~K~~Gp~G--~G~l~~~-~~~~~~l~~~~~g~ 225 (2602)
+|+++|++||+++|.|++|.- +..+. .+.. ...-+.+.|+||.|+++| +||++++ +++++.+....
T Consensus 187 ~i~~~a~~~~i~ii~DEiY~~l~yd~~~~~s~~~~~~~~~~~i~i~s~SK~~~mtGwRvG~~v~~~~~l~~~~~~~~--- 263 (393)
T COG0436 187 AIVELAREHDIIIISDEIYEELVYDGAEHPSILELAGARDRTITINSFSKTYGMTGWRIGWVVGPPEELIAALRKLK--- 263 (393)
T ss_pred HHHHHHHHcCeEEEEehhhhhcccCCCCcCCHhhcCCCcceEEEEecccccccccccceeEeecChHHHHHHHHHHH---
Confidence 788999999999999999752 21111 1221 123477789999999998 9999999 65665554322
Q ss_pred CccccccccCcchhHHHHHHHHHHHH--HHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc-cC
Q psy15216 226 GHEYGLRSGTLATHQIVGMGEAFRLA--RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IE 302 (2602)
Q Consensus 226 ~~~~~~~~gt~~~~~~~al~~al~~~--~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~-~~ 302 (2602)
......++.+...++.+||+.. ....+..++.+.++++.+.+.|.+ .+|+.+..+++.. ...+..++. .+
T Consensus 264 ----~~~~~~~~~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~rrd~l~~~l~~-~~g~~~~~~p~Ga--~Y~~~~i~~~~d 336 (393)
T COG0436 264 ----SYLTSCAPTPAQYAAIAALNGPQSDEVVEEMREEYRERRDLLVEALNE-IGGLSVVKPPEGA--FYLFPKIPELLD 336 (393)
T ss_pred ----HhcccCCCHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHh-cCCeeeccCCCee--EEEEeecCCCCC
Confidence 1123356666666666888843 245677778899999999999987 6788887643321 122222233 46
Q ss_pred hhHHHHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 303 GESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 303 ~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
+.++..+| .||.+.||..|..+ ...+++|+|+.. ..++++..++++++
T Consensus 337 ~~~f~~~Ll~~~gV~v~PG~~Fg~~----------------~g~~~vRis~~~--~~~~l~~a~~rl~~ 387 (393)
T COG0436 337 SEEFAKKLLEEAGVAVVPGSGFGEP----------------PGEGYVRLSLAT--SEETLEEALRRLAR 387 (393)
T ss_pred HHHHHHHHHHhCCEEEecccccCCC----------------CCCCeEEEEEec--CHHHHHHHHHHHHH
Confidence 67788777 68999999988642 124899999984 55889998888885
|
|
| >TIGR01788 Glu-decarb-GAD glutamate decarboxylase | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.9e-24 Score=271.95 Aligned_cols=341 Identities=15% Similarity=0.114 Sum_probs=251.6
Q ss_pred CCCCC--------CCCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCC-C-CcEEE--eCCHH
Q psy15216 1 MDYSA--------TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYAD-P-REIIW--TSGAT 68 (2602)
Q Consensus 1 Ld~a~--------~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~-~-~~Iv~--t~g~T 68 (2602)
||+++ ++|+.+.+.+.+..++...++||+. .+... ...+++++++++++|++ + +++.+ |+|+|
T Consensus 37 ld~~a~~~~~~~~tt~~~p~~~~~~~~~l~~~~~np~s----~~~~~-~le~~~~~~la~llg~~~~~~~~~g~~TsGgT 111 (431)
T TIGR01788 37 LDGNPRLNLATFVTTWMEPEARKLMDETINKNMIDKDE----YPQTA-EIENRCVNMLADLWHAPAKDAEAVGTSTIGSS 111 (431)
T ss_pred hcCCcceeeeeeeCCCCCHHHHHHHHHHHhcCCCCccc----CccHH-HHHHHHHHHHHHHhCCCCCCCCCeEEEechHH
Confidence 58888 8999999999999999776777765 13333 78999999999999997 4 45554 89999
Q ss_pred HHHHHHHHhcccccc----c-----CCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCC-CccChHHHHhhccCCce
Q psy15216 69 ESNNLAIKGAAHFYK----K-----RGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN-GLITLSQLEEKICSDTI 138 (2602)
Q Consensus 69 ~al~~~~~~l~~~~~----~-----~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~-~~ld~e~l~~~i~~~tk 138 (2602)
+|+++++.++..... . ++.+|++++.+|+|+..+++.+ |++++.++++++ +.+|+++|+++|+++|.
T Consensus 112 EAn~~al~~ar~~~~~~~~~~g~~~~~~~ii~s~~~H~sv~ka~~~l---g~~v~~i~~d~~~~~vd~~~L~~~i~~~t~ 188 (431)
T TIGR01788 112 EAIMLGGLAMKWRWRKRMEAAGKPTDKPNLVMGSNVQVCWEKFARYF---DVELREVPMDPGRYVIDPEQVVEAVDENTI 188 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCcchHHHHHHHHHc---CceeEEEecCCCceeeCHHHHHHHHhhCCe
Confidence 999999877642100 1 1248999999999998887766 899999999875 58999999999999999
Q ss_pred EEEEecccCcccccccHHHHHHHHHhc------CCEEEEeccccc-------ccccccCCCCCccEEEecccccc-CCCC
Q psy15216 139 LVSVMLVNNEIGVIQPILEIGELCRSK------GVIFHCDAAQAV-------GKIDINIQNYKVDLMSFSAHKIY-GPKG 204 (2602)
Q Consensus 139 lv~i~~~~npTG~~~~l~~I~~la~~~------g~~livD~a~a~-------g~~~~dl~~~~~D~~~~S~~K~~-Gp~G 204 (2602)
+|++++++|.||.+.|+++|+++|+++ |+++|+|++|+. +..+.++...++|++++|+||++ ||.|
T Consensus 189 lV~~t~g~t~tG~idpi~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~~~~~~~~~~~DSis~s~HK~~~~P~g 268 (431)
T TIGR01788 189 GVVCILGTTYTGEYEDVKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPDLEWDFRLPRVKSINVSGHKYGLVYPG 268 (431)
T ss_pred EEEEEeCCCCCcccCCHHHHHHHHHHHHhhhCCCceEEEecccHHHHHHHhCCCchhhcCCCCceEEEECchhccCCCCC
Confidence 999999999999999999999999999 999999999994 44445555567888999999965 9999
Q ss_pred cEEEEEecC--CCCccc--ceecCCCccccccccCcchhHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHhhccCc
Q psy15216 205 IGALYIRRN--PRTRIE--AQIHGGGHEYGLRSGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEE 279 (2602)
Q Consensus 205 ~G~l~~~~~--~~~~l~--~~~~g~~~~~~~~~gt~~~~~~~al~~al~-~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g 279 (2602)
+|+++++++ +...+. +.+.++........++.+....+++...|. +...++.++.++..++++++.++|.+ .++
T Consensus 269 ~G~l~~r~~~~l~~~~~~~~~yl~~~~~~~t~~~sR~g~~al~~w~~l~~lG~~G~~~i~~~~~~la~~l~~~L~~-~~~ 347 (431)
T TIGR01788 269 VGWVIWRDEEALPEELIFHVNYLGGDEPTFTLNFSRPANQVIAQYYNFLRLGREGYRKIMQNSLDVARYLAEEIAK-LGP 347 (431)
T ss_pred cEEEEEeChHHcchhheecccccCCCCCCcceecCchHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHh-CCC
Confidence 999999875 222222 113232211111122333333444555555 44578999999999999999999988 788
Q ss_pred eEEeCCCCCCCCceEEEEEcc-----cChhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCC
Q psy15216 280 IYINGDMNNRIPHNLNISFNF-----IEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGR 352 (2602)
Q Consensus 280 ~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~ 352 (2602)
++++.+.. ...++.|.+.. .+..++.+.| +|+.+.. +..+. .+. ..-++|+++..
T Consensus 348 ~el~~~~~--~~~iV~Fr~~~~~~~~~~~~~l~~~L~~~G~~~~~---~~~p~----------~~~---~~~~lR~~~~~ 409 (431)
T TIGR01788 348 FEIISDGS--GIPLVAFKLKDDADPGYTLYDLSHRLRERGWIVPA---YTLPK----------NAE---DIVVMRIVVRE 409 (431)
T ss_pred EEEeeCCC--CceEEEEEeCCCCCCCcCHHHHHHHHHHCCCcccC---CCCCC----------ccC---CeEEEEEEecC
Confidence 99986521 12455555543 3445666666 5665421 11110 010 01469999988
Q ss_pred CCCHHHHHHHHHHHHh
Q psy15216 353 FTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 353 ~~t~edid~li~~L~~ 368 (2602)
..+.+.++++++.|+.
T Consensus 410 ~~~~~~~~~~~~~~~~ 425 (431)
T TIGR01788 410 GFSRDLAELLIEDIEA 425 (431)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 8999999999999985
|
This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA). |
| >COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8e-24 Score=242.68 Aligned_cols=309 Identities=24% Similarity=0.322 Sum_probs=240.1
Q ss_pred EEEEEcCcccEEEEEEECCeeEEEeCCCCCccccEEEEEecC--Cc--EEEcHHHHhhhccCCCCchhhhhhhhCCCCCC
Q psy15216 639 SIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPD--GK--IYVGKKAKITQNIDPKNTISSIKRFIARDLKN 714 (2602)
Q Consensus 639 vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~v~~~~~--~~--~~vG~~A~~~~~~~p~~~~~~~K~~lg~~~~~ 714 (2602)
-+||||||.|+.|..- ++ -++.|. ||+|++..+ .. ..+|.+|++..-+.|.+...
T Consensus 8 diGIDLGTanTlV~~k--~k-gIVl~e------PSVVAi~~~~~~~~v~aVG~eAK~MlGrTP~ni~a------------ 66 (342)
T COG1077 8 DIGIDLGTANTLVYVK--GK-GIVLNE------PSVVAIESEGKTKVVLAVGEEAKQMLGRTPGNIVA------------ 66 (342)
T ss_pred cceeeecccceEEEEc--Cc-eEEecC------ceEEEEeecCCCceEEEehHHHHHHhccCCCCceE------------
Confidence 4899999999998754 33 345554 999999873 22 57899997766666654320
Q ss_pred CCCCCCCeeeecCCCceEEEEeCceeCHHHHHHHHHHHHHHHHHHhhc-CccceEEEEEcCCCCHHHHHHHHHHHHHcCC
Q psy15216 715 INTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVN-NRIFGAVITVPAYFNDIQRQFTKNAAKLAGL 793 (2602)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~-~~~~~~ViTVPa~f~~~qr~~~~~Aa~~AGl 793 (2602)
.....++.+.--++...+|+|+.+.....-+ ...-.++|.||..-++-+|+|+++|++.||.
T Consensus 67 -----------------iRPmkdGVIAd~~~te~ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VErrAi~ea~~~aGa 129 (342)
T COG1077 67 -----------------IRPMKDGVIADFEVTELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERRAIKEAAESAGA 129 (342)
T ss_pred -----------------EeecCCcEeecHHHHHHHHHHHHHHhccCCCCCCCCcEEEEecCCccHHHHHHHHHHHHhccC
Confidence 0111234555667888899999888774433 3334799999999999999999999999999
Q ss_pred ceEEEechhHHHHHHhhhccCcccceEEEEEeCCceEEEEEEEEECCEEEEEEEecCCCCcchHHHHHHHHHHHHHHhhc
Q psy15216 794 NVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLK 873 (2602)
Q Consensus 794 ~~~~li~EPtAAAl~y~~~~~~~~~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~ 873 (2602)
+.+.++.||.|||+..++.-..+.+ =+|||+||||+|++++.+.+ ++.... ..+||+.||+.+.+|+.++|..-
T Consensus 130 ~~V~lieEp~aAAIGaglpi~ep~G-~mvvDIGgGTTevaVISlgg----iv~~~S-irv~GD~~De~Ii~yvr~~~nl~ 203 (342)
T COG1077 130 REVYLIEEPMAAAIGAGLPIMEPTG-SMVVDIGGGTTEVAVISLGG----IVSSSS-VRVGGDKMDEAIIVYVRKKYNLL 203 (342)
T ss_pred ceEEEeccHHHHHhcCCCcccCCCC-CEEEEeCCCceeEEEEEecC----EEEEee-EEEecchhhHHHHHHHHHHhCee
Confidence 9999999999999987765443333 37999999999999999877 444444 68999999999999999987543
Q ss_pred cCCHHHHHHHHHHHHHHHHHccccc------ceEEEEE---ecCCceEEEEeCHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy15216 874 KLSYKDVNILMIKSREIKELLSYQS------SVKLNVK---LSDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDAN 944 (2602)
Q Consensus 874 ~~~~~~~~~l~~~~e~~K~~LS~~~------~~~~~i~---~~~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~a~ 944 (2602)
-.. ..+|++|+...... ...+.+. +..|..-.++++-++..+..++.++++.+.++..|++..
T Consensus 204 IGe--------~taE~iK~eiG~a~~~~~~~~~~~eV~Grdl~~GlPk~i~i~s~ev~eal~~~v~~Iveair~~Le~tp 275 (342)
T COG1077 204 IGE--------RTAEKIKIEIGSAYPEEEDEELEMEVRGRDLVTGLPKTITINSEEIAEALEEPLNGIVEAIRLVLEKTP 275 (342)
T ss_pred ecH--------HHHHHHHHHhcccccccCCccceeeEEeeecccCCCeeEEEcHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 222 34889998874432 2234443 344566688999999999999999999999999999975
Q ss_pred --CCccccce-EEEecCccchHHHHHHHHhhccCcccCcCCcchHhHHHHHHHhHHhc
Q psy15216 945 --LTIKDINN-VILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLS 999 (2602)
Q Consensus 945 --~~~~~i~~-V~LvGG~sr~P~v~~~l~~~f~~~~~~~~~p~~aVa~GAa~~a~~l~ 999 (2602)
+..+-++. ++|+||.+.+..+.+.+++..+.++....+|..+||+|+......+.
T Consensus 276 PeL~~DI~ergivltGGGalLrglD~~i~~et~~pv~ia~~pL~~Va~G~G~~le~~~ 333 (342)
T COG1077 276 PELAADIVERGIVLTGGGALLRGLDRLLSEETGVPVIIADDPLTCVAKGTGKALEALD 333 (342)
T ss_pred chhcccHhhCceEEecchHHhcCchHhHHhccCCeEEECCChHHHHHhccchhhhhhH
Confidence 33444555 99999999999999999999999999999999999999998776553
|
|
| >COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.1e-24 Score=243.61 Aligned_cols=309 Identities=23% Similarity=0.326 Sum_probs=238.6
Q ss_pred EEEEEcCcccEEEEEEECCeEEEEeCCCCCccccEEEEEecC--Cc--EEecHHHHhhhccCCCCchhhhhhhcCCCCCC
Q psy15216 2035 SIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPD--GK--IYVGKKAKITQNIDPKNTISSIKRFIARDLKN 2110 (2602)
Q Consensus 2035 vvGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~~--~~--~~vG~~A~~~~~~~p~~~~~~~K~~lg~~~~~ 2110 (2602)
-+||||||.|+.|..- ++- ++.|. ||+|++..+ .. ..+|.+|+...-+.|.+...
T Consensus 8 diGIDLGTanTlV~~k--~kg-IVl~e------PSVVAi~~~~~~~~v~aVG~eAK~MlGrTP~ni~a------------ 66 (342)
T COG1077 8 DIGIDLGTANTLVYVK--GKG-IVLNE------PSVVAIESEGKTKVVLAVGEEAKQMLGRTPGNIVA------------ 66 (342)
T ss_pred cceeeecccceEEEEc--Cce-EEecC------ceEEEEeecCCCceEEEehHHHHHHhccCCCCceE------------
Confidence 4999999999999765 332 44453 999999863 22 57899997776666654431
Q ss_pred CCCCCCCeeeecCCCceEEEecCceeCHHHHHHHHHHHHHHHHHHhhc-cccceEEEeeCCCCCHHHHHHHHHHHHHcCC
Q psy15216 2111 INTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVN-NRIFGAVITVPAYFNDIQRQFTKNAAKLAGL 2189 (2602)
Q Consensus 2111 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~-~~~~~~ViTVPa~f~~~qr~~l~~Aa~~AGl 2189 (2602)
.....++...--++...+|+++.+......+ .....++++||..-++-+|+++++|++.||.
T Consensus 67 -----------------iRPmkdGVIAd~~~te~ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VErrAi~ea~~~aGa 129 (342)
T COG1077 67 -----------------IRPMKDGVIADFEVTELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERRAIKEAAESAGA 129 (342)
T ss_pred -----------------EeecCCcEeecHHHHHHHHHHHHHHhccCCCCCCCCcEEEEecCCccHHHHHHHHHHHHhccC
Confidence 0011234455567888888988888774433 3344799999999999999999999999999
Q ss_pred ceeEeechhHHHHHHhhhccCCCCceEEEEEeCCceEEEEEEEEeCCEEEEEEEecCCCCchhHHHHHHHHHHHHHHhhh
Q psy15216 2190 NVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLK 2269 (2602)
Q Consensus 2190 ~~~~li~EP~AAAl~y~~~~~~~~~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~ 2269 (2602)
+.+.++.||.|||+..++.-..+.++ ||+|+||||+|++++.+.+ ++.... ..+||+.||+.+++|+.++|..
T Consensus 130 ~~V~lieEp~aAAIGaglpi~ep~G~-mvvDIGgGTTevaVISlgg----iv~~~S-irv~GD~~De~Ii~yvr~~~nl- 202 (342)
T COG1077 130 REVYLIEEPMAAAIGAGLPIMEPTGS-MVVDIGGGTTEVAVISLGG----IVSSSS-VRVGGDKMDEAIIVYVRKKYNL- 202 (342)
T ss_pred ceEEEeccHHHHHhcCCCcccCCCCC-EEEEeCCCceeEEEEEecC----EEEEee-EEEecchhhHHHHHHHHHHhCe-
Confidence 99999999999999887765544444 7999999999999999988 555555 7999999999999999987421
Q ss_pred cCChhHHHHHHHHHHHHHHHhcccc------eEEEEEE---ecCCceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy15216 2270 KLSYKDVNILMIKSREIKELLSYQS------SVKLNVK---LSDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDAN 2340 (2602)
Q Consensus 2270 ~~~~~~~~~l~~~~e~~K~~ls~~~------~~~~~i~---~~~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~~~ 2340 (2602)
-.. .+.+|++|......- ...+.+. +..+..-.++++-++..+.+++.++++.+.++..|++..
T Consensus 203 ~IG-------e~taE~iK~eiG~a~~~~~~~~~~~eV~Grdl~~GlPk~i~i~s~ev~eal~~~v~~Iveair~~Le~tp 275 (342)
T COG1077 203 LIG-------ERTAEKIKIEIGSAYPEEEDEELEMEVRGRDLVTGLPKTITINSEEIAEALEEPLNGIVEAIRLVLEKTP 275 (342)
T ss_pred eec-------HHHHHHHHHHhcccccccCCccceeeEEeeecccCCCeeEEEcHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 111 245888888875432 2233443 334445678999999999999999999999999999875
Q ss_pred CCc--cccce-EEEEeCccchHHHHHHHHhhcCCcccCCCCccchhhhHHHHHhHHhc
Q psy15216 2341 LTI--KDINN-VILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLS 2395 (2602)
Q Consensus 2341 ~~~--~~i~~-V~LvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~aVa~GAa~~a~~~~ 2395 (2602)
... +-++. ++|+||.|.+..+.+.+++..+.++....+|..+||+|+......+.
T Consensus 276 PeL~~DI~ergivltGGGalLrglD~~i~~et~~pv~ia~~pL~~Va~G~G~~le~~~ 333 (342)
T COG1077 276 PELAADIVERGIVLTGGGALLRGLDRLLSEETGVPVIIADDPLTCVAKGTGKALEALD 333 (342)
T ss_pred chhcccHhhCceEEecchHHhcCchHhHHhccCCeEEECCChHHHHHhccchhhhhhH
Confidence 432 22444 99999999999999999999999999999999999999998765543
|
|
| >TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.3e-24 Score=273.28 Aligned_cols=323 Identities=17% Similarity=0.193 Sum_probs=241.9
Q ss_pred CCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCC--cEEEeCCHHHHHHHHHHhhhhhhcc
Q psy15216 1403 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPR--EIIWTSGATESNNLAIKGAAHFYKK 1480 (2602)
Q Consensus 1403 ~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~--~iv~t~gaT~al~~al~~l~~~~~~ 1480 (2602)
...++.+.+++.+.+. + +...+.+..+++|+.+++++|++++ .|++++|+|+++..++.++. +
T Consensus 8 ~~~~~~~~~~~~~~~~------~-----~~~~~~~~~~~~~~~la~~~~~~~~~~~i~~~~~gt~~l~~~~~~~~----~ 72 (355)
T TIGR03301 8 LSTSATVRDAMLVDWC------H-----WDSEFNDVTDQVRDRLLALAGGDDNHTCVLLQGSGTFAVEATIGSLV----P 72 (355)
T ss_pred CCCCHHHHHHhhhhcc------C-----CCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCcHHHHHHHHHhcc----C
Confidence 4555666666655221 1 1223347789999999999999765 57789999999999999987 6
Q ss_pred CCCEEEEcCCC-CcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccC--CceEEEEeccccccccccChHHHHHH
Q psy15216 1481 RGKHIITVQTE-HKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS--DTILVSVMLVNNEIGVIQPILEIGEL 1557 (2602)
Q Consensus 1481 ~gd~Vlv~~~~-~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~--~t~lv~l~~~~n~tG~~~~l~~I~~i 1557 (2602)
++|++++..+. |+... ...+...|.+++.++.++++.+|++++++++++ ++++++++|++|+||.+.|+++|.++
T Consensus 73 ~~~~vi~~~~~~~~~~~--~~~a~~~g~~~~~i~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~~G~~~~~~~i~~l 150 (355)
T TIGR03301 73 RDGKLLVLINGAYGERL--AKICEYLGIPHTDLNFSEYEPPDLNRIEEALAADPDITHVATVHHETTTGILNPLEAIAKV 150 (355)
T ss_pred CCCeEEEECCCchhhHH--HHHHHHcCCceEEEecCCCCCCCHHHHHHHHHhCCCceEEEEEecCCcccchhHHHHHHHH
Confidence 77776655544 44421 223344599999999887788999999999974 56788899999999999999999999
Q ss_pred hhhcCCEEEEecccccCcccccCCCCCccEEEEcccc-ccCCCceEEEEEecCCCCccccccccCC----------cccc
Q psy15216 1558 CRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGG----------HEYG 1626 (2602)
Q Consensus 1558 a~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K-~~gp~G~G~l~~~~~~~~~l~~~~~g~~----------~~~~ 1626 (2602)
|++||+++++|++|++|..++++..+++|++++|+|| ++||+|+|+++++++.++.+........ ...+
T Consensus 151 ~~~~~~~livD~~~s~g~~~~~~~~~~~d~~~~s~~K~l~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (355)
T TIGR03301 151 ARSHGAVLIVDAMSSFGAIPIDIEELDVDALIASANKCLEGVPGFGFVIARRDLLEASAGNARSLYLDLYDQWAYMEKTG 230 (355)
T ss_pred HHHcCCEEEEEeccccCCcccchhhcCccEEEecCCcccccCCceeEEEECHHHHHHhhCCCCCceeeHHHHHHHhhhcC
Confidence 9999999999999999988888888899999999999 5689999999999887655442111100 0012
Q ss_pred CCCCCcchhHHHHHHHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEec---CCcHH
Q psy15216 1627 LRSGTLATHQIVGMGEAFRLAR-IE-MKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF---IEGES 1701 (2602)
Q Consensus 1627 ~~~gt~~~~~~~al~~aL~~~~-~~-~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~---~~~~~ 1701 (2602)
...++++...++++.++++.+. .+ +++..++++++++++++.|.+ .++.+..++....+....+.++. .+..+
T Consensus 231 ~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~L~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (355)
T TIGR03301 231 KWRFTPPTHTVYAFAQALEELEAEGGVPARIARYRRNRELLVDGLRA--LGFQPLLPERWQSPIIVSFLYPDDPDFDFDD 308 (355)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHH--cCCeeecCCCCCCCcEEEEECCCCCcchHHH
Confidence 2345788899999999999553 44 788889999999999999987 37766544332223233444443 23346
Q ss_pred HHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1702 LLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1702 ~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
+...| +||.+.++..+. .+++||+++.++|.+|+++++++|++
T Consensus 309 ~~~~l~~~gi~i~~~~~~~--------------------~~~iRis~~~~~~~~~i~~~~~~l~~ 353 (355)
T TIGR03301 309 FYQELKERGFVIYPGKLTL--------------------ADTFRIGTIGEIDAADIERLLEAIKD 353 (355)
T ss_pred HHHHHHHCCEEEECCcccc--------------------ccEEEEecCCCCCHHHHHHHHHHHHh
Confidence 66666 799998765321 15899999999999999999999986
|
This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different. |
| >PTZ00094 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.7e-24 Score=281.52 Aligned_cols=337 Identities=19% Similarity=0.231 Sum_probs=257.2
Q ss_pred CCCCCCCHHHHHHHHHHHhhhc--CCCCCCCcchhhhHHHHHHH-HHHHHHHHhCCCCCcEEEe---CCHHHHHHHHHHh
Q psy15216 4 SATTPIDPRVVDKMIPYLRVQF--GNPASRNHIYGWTAEKAIEK-ARNEVAQLIYADPREIIWT---SGATESNNLAIKG 77 (2602)
Q Consensus 4 a~~~~~p~~v~~a~~~~l~~~~--~~p~~~~~~~~~~~~~~~~~-~r~~lA~~~g~~~~~Iv~t---~g~T~al~~~~~~ 77 (2602)
++...+++.+++++...+...| +||++ .|..|....+.+++ +|+.++++||++++++.++ +|+++|+.+++.+
T Consensus 41 ~sen~~s~~v~~~~~~~l~~~y~~g~p~s-~~~~g~~~~~~iE~~ar~~~a~lf~a~~~~~~~~~~~~sgt~an~~v~~a 119 (452)
T PTZ00094 41 ASENFTSRAVLECLGSCFTNKYAEGLPGN-RYYGGNEVVDKIENLCQKRALEAFGLDPEEWGVNVQPYSGSPANFAVYTA 119 (452)
T ss_pred cccccCCHHHHHHhcchhhccccCCCCCc-cccccchHHHHHHHHHHHHHHHHhCCCcccceeecCCCchHHHHHHHHHH
Confidence 4556889999999999998877 89986 67777777777774 8999999999988887777 8999999999999
Q ss_pred cccccccCCCEEEEcCCCCcccHHHHHHHHh-------CCcEEEEeccCCCCccChHHHHhhccC-CceEEEEecccCcc
Q psy15216 78 AAHFYKKRGKHIITVQTEHKSVLDSIRKLEN-------DGFRVTYLKPKNNGLITLSQLEEKICS-DTILVSVMLVNNEI 149 (2602)
Q Consensus 78 l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~-------~G~~v~~v~~~~~~~ld~e~l~~~i~~-~tklv~i~~~~npT 149 (2602)
+. ++||+|++++.+|+++...+..+++ .+..+..+++++++.+|+++|+++++. +++++++. ++.+
T Consensus 120 l~----~~gd~Ii~~~~ehg~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~id~~~L~~~l~~~~~~lvi~~--~s~~ 193 (452)
T PTZ00094 120 LL----QPHDRIMGLDLPSGGHLTHGFYTAKKKVSATSIYFESLPYQVNEKGLIDYDKLEELAKAFRPKLIIAG--ASAY 193 (452)
T ss_pred hc----CCCCEEEecccccCCcccccccccccccccceeeeeeeecccCCCCCcCHHHHHHHHHHhCCCEEEEe--CCCC
Confidence 87 7999999999999998776643321 123445555676789999999999954 67777764 3459
Q ss_pred cccccHHHHHHHHHhcCCEEEEecccccccccccCCC---CCccEEEecccc-ccCCCCcEEEEEecCCCCcccceecCC
Q psy15216 150 GVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQN---YKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGG 225 (2602)
Q Consensus 150 G~~~~l~~I~~la~~~g~~livD~a~a~g~~~~dl~~---~~~D~~~~S~~K-~~Gp~G~G~l~~~~~~~~~l~~~~~g~ 225 (2602)
|...|+++|.++||++|+++++|++|++|..+.++.. .++|++++|+|| ++||.| |+++++++..+.+.+.....
T Consensus 194 g~~~di~~I~~i~~~~ga~l~vDaaq~~G~i~~~~~~~~~~~~D~l~~S~hK~l~GP~G-g~l~~~~~~~~~l~~~~~~~ 272 (452)
T PTZ00094 194 PRDIDYKRFREICDSVGAYLMADIAHTSGLVAAGVLPSPFPYADVVTTTTHKSLRGPRS-GLIFYRKKVKPDIENKINEA 272 (452)
T ss_pred CCccCHHHHHHHHHHcCCEEEEeccchhccccCCCCCCCCCCCcEEEcCCccCCCCCCc-eEEEEecccchHHHHhhccc
Confidence 9999999999999999999999999999998765432 258999999999 568998 88888876554333222111
Q ss_pred CccccccccCcchhHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEE--cccC
Q psy15216 226 GHEYGLRSGTLATHQIVGMGEAFRLAR-IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISF--NFIE 302 (2602)
Q Consensus 226 ~~~~~~~~gt~~~~~~~al~~al~~~~-~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~--~~~~ 302 (2602)
..+ .+ .|+++...++++.+|+++.. .+.+++.++..++++++.+.|.+ .|+.+..+... .+...+.+ +..+
T Consensus 273 ~~p-~~-~G~~~~~~iaal~~al~~~~~~~~~~~~~~i~~l~~~l~~~L~~--~g~~v~~~~~~--~~~~~v~~~~~~~~ 346 (452)
T PTZ00094 273 VFP-GL-QGGPHNHQIAAIAVQLKEVQSPEWKEYAKQVLKNAKALAAALEK--RGYDLVTGGTD--NHLVLVDLRPFGIT 346 (452)
T ss_pred cCC-CC-CCCchHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHh--CCcEEecCCCC--CceEeecCCcCCCC
Confidence 111 12 47889999999999999764 46788899999999999999987 48877754322 12333344 3456
Q ss_pred hhHHHHHh--CCeEE-cccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCC----HHHHHHHHHHHHhh
Q psy15216 303 GESLLMAI--KDIAV-SSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTT----EKEIDFTIKLLKMK 369 (2602)
Q Consensus 303 ~~~~~~~L--~gI~v-~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t----~edid~li~~L~~~ 369 (2602)
...+...| +||.+ +.+..|.+. ....++||+|++.+|| ++||++++++|++.
T Consensus 347 ~~~~~~~L~~~gI~vs~~~~p~~~~---------------~~~~~~vRis~~~~tt~g~~~~di~~l~~~l~~~ 405 (452)
T PTZ00094 347 GSKMEKLLDAVNISVNKNTIPGDKS---------------ALNPSGVRLGTPALTTRGAKEKDFKFVADFLDRA 405 (452)
T ss_pred HHHHHHHHHHCCcEEecccCCCCCc---------------CCCCCeEEECCHHHHhCCCCHHHHHHHHHHHHHH
Confidence 66666666 69999 455555431 1123789999999987 99999999999864
|
|
| >TIGR02529 EutJ ethanolamine utilization protein EutJ family protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.8e-25 Score=260.05 Aligned_cols=205 Identities=23% Similarity=0.317 Sum_probs=177.0
Q ss_pred ceeCHHHHHHHHHHHHHHHHHHhhcCccceEEEEEcCCCCHHHHHHHHHHHHHcCCceEEEechhHHHHHHhhhccCccc
Q psy15216 738 GIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFE 817 (2602)
Q Consensus 738 ~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~~~~Aa~~AGl~~~~li~EPtAAAl~y~~~~~~~~ 817 (2602)
+.+.-.+..+.+|+++++.++.+++.++.++|||||++|++.||+++.+|++.||++++.+++||.|||++|+..
T Consensus 34 g~I~d~~~~~~~l~~l~~~a~~~~g~~~~~vvisVP~~~~~~~r~a~~~a~~~aGl~~~~li~ep~Aaa~~~~~~----- 108 (239)
T TIGR02529 34 GIVVDFLGAVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAAAAVLQIK----- 108 (239)
T ss_pred CeEEEhHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCcccHHHHHHHHHHcCCceEEEeehHHHHHHHhcCC-----
Confidence 344556888999999999999999999999999999999999999999999999999999999999999998653
Q ss_pred ceEEEEEeCCceEEEEEEEEECCEEEEEEEecCCCCcchHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHcccc
Q psy15216 818 GIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQ 897 (2602)
Q Consensus 818 ~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~l~~~~e~~K~~LS~~ 897 (2602)
..+|+|+||||+|+++++. +. ++. ..+..+||++||+.|.+.+.- -..+||++|+.++
T Consensus 109 -~~~vvDiGggtt~i~i~~~--G~--i~~-~~~~~~GG~~it~~Ia~~~~i--------------~~~~AE~~K~~~~-- 166 (239)
T TIGR02529 109 -NGAVVDVGGGTTGISILKK--GK--VIY-SADEPTGGTHMSLVLAGAYGI--------------SFEEAEEYKRGHK-- 166 (239)
T ss_pred -CcEEEEeCCCcEEEEEEEC--Ce--EEE-EEeeecchHHHHHHHHHHhCC--------------CHHHHHHHHHhcC--
Confidence 2499999999999999764 33 333 345789999999988755431 1368999998754
Q ss_pred cceEEEEEecCCceEEEEeCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccceEEEecCccchHHHHHHHHhhccCcc
Q psy15216 898 SSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTL 977 (2602)
Q Consensus 898 ~~~~~~i~~~~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~a~~~~~~i~~V~LvGG~sr~P~v~~~l~~~f~~~~ 977 (2602)
+.+++.++++++++++.+.+++.|++. .++.|+|+||+|++|.+++.+++.|+.++
T Consensus 167 -------------------~~~~~~~~i~~~~~~i~~~i~~~l~~~-----~~~~v~LtGG~a~ipgl~e~l~~~lg~~v 222 (239)
T TIGR02529 167 -------------------DEEEIFPVVKPVYQKMASIVKRHIEGQ-----GVKDLYLVGGACSFSGFADVFEKQLGLNV 222 (239)
T ss_pred -------------------CHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCEEEEECchhcchhHHHHHHHHhCCCc
Confidence 246678899999999999999999865 45789999999999999999999999999
Q ss_pred cCcCCcchHhHHHHHH
Q psy15216 978 LTSIDPDKAVVFGAAI 993 (2602)
Q Consensus 978 ~~~~~p~~aVa~GAa~ 993 (2602)
..+.||++++|.|||+
T Consensus 223 ~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 223 IKPQHPLYVTPLGIAM 238 (239)
T ss_pred ccCCCCCeehhheeec
Confidence 9999999999999986
|
|
| >PLN03032 serine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-23 Score=262.99 Aligned_cols=316 Identities=16% Similarity=0.175 Sum_probs=247.8
Q ss_pred CHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcE--EEeCCHHHHHHHHHHhhhhhhccCCC
Q psy15216 1406 DPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREI--IWTSGATESNNLAIKGAAHFYKKRGK 1483 (2602)
Q Consensus 1406 ~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~i--v~t~gaT~al~~al~~l~~~~~~~gd 1483 (2602)
....++++.+++.+.++||.+ .|.++.......+++++++++++|++++++ +||+|+|+|++.++.+.... .++.
T Consensus 36 ~~~~~~~~~~~~~~~~gnP~s-~~~~g~~a~~~e~~v~~~ia~llg~~~~~~~G~fTsGGTEaNl~al~~ar~~--~~~~ 112 (374)
T PLN03032 36 DYGELSQLMKYSINNLGDPFI-ESNYGVHSRQFEVGVLDWFARLWELEKDEYWGYITTCGTEGNLHGILVGREV--FPDG 112 (374)
T ss_pred ChHHHHHHHHhcccCCCCCcc-cCCCCccHHHHHHHHHHHHHHHhCCCCccCCEEEeCchHHHHHHHHHHHHHh--CCCc
Confidence 335688888888888899988 677788888999999999999999988775 99999999999998876521 3556
Q ss_pred EEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccC---CceEEEEeccccccccccChHHHHHHhhh
Q psy15216 1484 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS---DTILVSVMLVNNEIGVIQPILEIGELCRS 1560 (2602)
Q Consensus 1484 ~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~---~t~lv~l~~~~n~tG~~~~l~~I~~ia~~ 1560 (2602)
+|+++..+|+|+..+++.+ |..++.||++++|.+|+++|+++|.+ +|.+|++++.+|+||.+.|+++|+++|++
T Consensus 113 ~vi~s~~~H~Sv~kaa~~l---g~~~~~V~~d~~g~id~~~L~~~i~~~~~~~~lvv~tagtt~tG~idpi~eI~~i~~~ 189 (374)
T PLN03032 113 ILYASRESHYSVFKAARMY---RMEAVKVPTLPSGEIDYDDLERALAKNRDKPAILNVNIGTTVKGAVDDLDRILRILKE 189 (374)
T ss_pred EEEeCCCceeHHHHHHHHc---CCCCeEeeeCCCCcCcHHHHHHHHHHcCCCCEEEEEEecCcCCccCCCHHHHHHHHHH
Confidence 9999999999999888877 77788999999999999999999987 57799999999999999999999999999
Q ss_pred cC-----CEEEEecccccCcccc-------cCCCCCccEEEEccccccC-CCceEEEEEecCCCCccc--cccccCCccc
Q psy15216 1561 KG-----VIFHCDAAQAVGKIDI-------NIQNYKVDLMSFSAHKIYG-PKGIGALYIRRNPRTRIE--AQIHGGGHEY 1625 (2602)
Q Consensus 1561 ~g-----i~vivD~a~~~g~~~~-------~l~~~~~D~~v~S~~K~~g-p~G~G~l~~~~~~~~~l~--~~~~g~~~~~ 1625 (2602)
|| +|+|+|+|++.+..++ ++. .++|.+++|+||++| |.|+|+++++++.+..+. ..|... ..
T Consensus 190 ~g~~~~~~~lHvDaA~gg~~~p~~~~~~~~~~~-~~vDSis~s~HK~~g~P~g~G~ll~r~~~~~~~~~~~~Yl~~--~d 266 (374)
T PLN03032 190 LGYTEDRFYIHCDGALFGLMMPFVSRAPEVTFR-KPIGSVSVSGHKFLGCPMPCGVALTRKKHVKALSQNVEYLNS--RD 266 (374)
T ss_pred hCCCCCCeeEEEEccchhhhhhccCCCcccCCC-cCCcEEEECcccccCCCcCeEEEEEEchhhHhhccCCcccCC--CC
Confidence 96 5999999999887764 443 368999999999877 999999999987655432 122211 11
Q ss_pred cCCCCCcchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecCCcHHHHH
Q psy15216 1626 GLRSGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLM 1704 (2602)
Q Consensus 1626 ~~~~gt~~~~~~~al~~aL~-~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 1704 (2602)
....|+.+....+++..+|. +..+++.+..++..++++++.+.|.+ .++.+... |...++.|.....+.+.
T Consensus 267 ~ti~gSR~g~~~l~~w~~l~~~G~~g~~~~~~~~~~~a~~l~~~l~~--~~~~~~~~-----p~~~~V~f~~~~~~~~~- 338 (374)
T PLN03032 267 ATIMGSRNGHAPLYLWYTLRRKGYRGIKRDVQHCMRNAHYLKDRLTE--AGLTCRLN-----ELSSTVVFERPMDEAFI- 338 (374)
T ss_pred CcccCCCchHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHh--CCCcEEEC-----CCceEEEEcCCCcHhHh-
Confidence 22346666555566667777 56688999999999999999999988 46665433 33445666654333222
Q ss_pred hcCCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1705 AIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1705 ~L~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
++..+.+ . .+.+|+.+.+..|.+.+|++++-|++
T Consensus 339 --~~w~l~~-----~-------------------~~~~hi~vm~~~~~~~id~fi~dl~~ 372 (374)
T PLN03032 339 --KKWQLAC-----E-------------------GDIAHVVVMPNVTVEKLDEFVEELVE 372 (374)
T ss_pred --heeeecc-----c-------------------CCEEEEEECCCCCHHHHHHHHHHHhc
Confidence 2333321 0 15799999998999999999998875
|
|
| >PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-23 Score=272.40 Aligned_cols=329 Identities=16% Similarity=0.155 Sum_probs=242.0
Q ss_pred CCCCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhccccccc
Q psy15216 5 ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKK 84 (2602)
Q Consensus 5 ~~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~ 84 (2602)
-.+|+++.+++++.++.. .+++|..-.+..+....+..+++|+.+|+++|++ ++++++|+|+|+..++.++. +
T Consensus 28 ~~~p~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~lA~~~g~~--~~~~~~g~t~a~~~al~~l~----~ 100 (387)
T PRK09331 28 RGGILTPEARKALIEYGD-GYSVCDYCPGRLDQIKKPPIADFHEDLAEFLGMD--EARVTHGAREGKFAVMHSLC----K 100 (387)
T ss_pred cCCCCCHHHHHHHHHHHh-ccCCCcccccccccccChHHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHhc----C
Confidence 357999999999999984 4455532123444445567999999999999985 67889999999999999987 8
Q ss_pred CCCEEEEcCCCCcccHHHHHHHHhCCcEEEEecc--CCCCccChHHHHhhccC-------CceEEEEecccCcccccccH
Q psy15216 85 RGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP--KNNGLITLSQLEEKICS-------DTILVSVMLVNNEIGVIQPI 155 (2602)
Q Consensus 85 ~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~--~~~~~ld~e~l~~~i~~-------~tklv~i~~~~npTG~~~~l 155 (2602)
+||+|+++.++|++....+. ..|++++.++. ++++.+|++++++++++ ++++|+++|++|+||.+.|+
T Consensus 101 ~gd~Vlv~~~~h~s~~~~~~---~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lV~l~~~~~~tG~~~~l 177 (387)
T PRK09331 101 KGDYVVLDGLAHYTSYVAAE---RAGLNVREVPKTGYPEYKITPEAYAEKIEEVKEETGKPPALALLTHVDGNYGNLADA 177 (387)
T ss_pred CCCEEEECCCchHHHHHHHH---HcCCEEEEEeCccCcCCCcCHHHHHHHHHHhhhccCCCCEEEEEECCCCCCcccccH
Confidence 99999999999999876554 44999999998 66788999999999863 68999999999999999999
Q ss_pred HHHHHHHHhcCCEEEEecccccccccccCCCCCccEEEecccccc-CCCCcEEEEEecCCCCcccceecCCCc-cccccc
Q psy15216 156 LEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIY-GPKGIGALYIRRNPRTRIEAQIHGGGH-EYGLRS 233 (2602)
Q Consensus 156 ~~I~~la~~~g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K~~-Gp~G~G~l~~~~~~~~~l~~~~~g~~~-~~~~~~ 233 (2602)
++|+++||+||+++++|++|+.|..|++...+++|++++|+||++ +|+|+|++++++++++.+.....+... ...+..
T Consensus 178 ~~I~~la~~~g~~livD~a~~~g~~~~~~~~~g~D~~~~s~~K~l~~~~~~G~l~~~~~~i~~~~~~~~~~~~~~~~~~~ 257 (387)
T PRK09331 178 KKVAKVAHEYGIPFLLNGAYTVGRMPVDGKKLGADFIVGSGHKSMAASAPSGVLATTEEYADKVFRTSRKFGVKEVELLG 257 (387)
T ss_pred HHHHHHHHHcCCEEEEECCcccCCcCCCHHHcCCCEEEeeCcccccCCCCEEEEEECHHHHhhcccccCCCcccceeeec
Confidence 999999999999999999999999999988889999999999955 677899999998877765433211110 001112
Q ss_pred cCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEccc---------Chh
Q psy15216 234 GTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI---------EGE 304 (2602)
Q Consensus 234 gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~---------~~~ 304 (2602)
++.+....+++.++++...+.. +..++..++++++++.|.+ ++|++++..... .++++.+..+.. .+.
T Consensus 258 ~~~~~~~~~~~~aal~~~~~~~-~~~~~~~~~~~~l~~~L~~-l~g~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~ 334 (387)
T PRK09331 258 CTLRGAPLVTLMASFPHVVERV-KRWDEEVKKARWFVDELEK-IEGFKQLGEKPR-NHDLMKFETPSFDEIAKKHKRRGF 334 (387)
T ss_pred eecCchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhc-CCCEEEeccCcC-cCCeEEEeCCchhHHhhhccccch
Confidence 2333344555556666444333 3455667788899999987 779998853211 233444443421 123
Q ss_pred HHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 305 SLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 305 ~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
.+.+.| +||...+ ++ ....+|+... ..|.+|+++++++|++.
T Consensus 335 ~~~~~L~~~gI~~~~-----~~-----------------~~~i~ri~~~-g~t~~di~~l~~aL~~i 378 (387)
T PRK09331 335 FLYEELKKRGIHGIK-----PG-----------------ATKEFKLSTY-GLTWEQVEYVADAFKEI 378 (387)
T ss_pred hHHHHHHHcCceEEc-----cC-----------------CceEEEEEec-cCCHHHHHHHHHHHHHH
Confidence 455555 5765211 00 0245677652 36999999999999964
|
|
| >PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.1e-24 Score=272.53 Aligned_cols=332 Identities=15% Similarity=0.124 Sum_probs=244.4
Q ss_pred ccCCCCCCCHHHHHHHHHHHhhccCCCCCccc---hhHHHHHHHHHHHHHHHHHHhCCC-CCcEEE-eCCHHHHHHHHHH
Q psy15216 1398 FKDATTPIDPRVVDKMIPYLRVQFGNPASRNH---IYGWTAEKAIEKARNEVAQLIYAD-PREIIW-TSGATESNNLAIK 1472 (2602)
Q Consensus 1398 L~~~~~~~~~~v~eal~~~l~~~~~np~~~~~---~~~~~~~~~~~~lr~~ia~~~g~~-~~~iv~-t~gaT~al~~al~ 1472 (2602)
+....++.|+.+++++.+.+.+.. +.+.|.+ +.+..+.++++++++.++++++++ ..++++ ++++|.|+..++.
T Consensus 7 ~~pGP~~~p~~V~~a~~~~~~~~~-~~~~g~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgt~~~Ea~~~ 85 (360)
T PRK05355 7 FSAGPAMLPEEVLEQAQQELLDWN-GSGMSVMEISHRSKEFEAVAEEAEADLRELLNIPDNYKVLFLQGGASLQFAMVPM 85 (360)
T ss_pred ccCCCCCCCHHHHHHHHHHhhccc-cCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCchHHHHHHHH
Confidence 345667899999999999875432 3333333 335566689999999999999983 344555 5788888999999
Q ss_pred hhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCC-CCCcChhHHHh-hccCCceEEEEecccccccccc-
Q psy15216 1473 GAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NGLITLSQLEE-KICSDTILVSVMLVNNEIGVIQ- 1549 (2602)
Q Consensus 1473 ~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~-~~~id~d~l~~-~i~~~t~lv~l~~~~n~tG~~~- 1549 (2602)
++. .+|+++++......+.. +.+.+++.|.. ..+..++ .+..+..++++ ++++++++|.++|.+|.||.++
T Consensus 86 nl~----~~g~~~l~i~~G~fg~r-~~~~a~~~g~~-~~~~~~~~~g~~~~~~~~~~~l~~~~~~V~~th~eTstGv~~~ 159 (360)
T PRK05355 86 NLL----GGGKKADYVDTGSWSKK-AIKEAKKYGEV-NVAASSEDDGFTYIPPLDEWQLSDDAAYVHYTSNETIDGTEFH 159 (360)
T ss_pred hcC----CCCCeEEEEECCHHHHH-HHHHHHHhCCc-eEEecccccCCCCCCChhhccCCCCCCEEEEccCCCcceEecC
Confidence 998 78898888877666643 35666777865 6666554 45555555555 8888999999999999999998
Q ss_pred ChHHHHHHhhhcCCEEEEecccccCcccccCCCCCccEEEEccccccCCCceEEEEEecCCCCccccccccCC-----cc
Q psy15216 1550 PILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGG-----HE 1624 (2602)
Q Consensus 1550 ~l~~I~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K~~gp~G~G~l~~~~~~~~~l~~~~~g~~-----~~ 1624 (2602)
|+.+| ||+++++|++|++|+.++++.++ |++++|+||++||+|+|++++++++++++.|...++. ..
T Consensus 160 ~i~~i------~g~l~vVDavss~g~~~idv~~~--d~~~~ssqK~lgP~Glg~l~~s~~~l~~~~~~~~~~~~~~~~~~ 231 (360)
T PRK05355 160 ELPDT------GDVPLVADMSSDILSRPIDVSKF--GLIYAGAQKNIGPAGLTIVIVREDLLGRALPSIPSMLDYKTHAD 231 (360)
T ss_pred ccccc------CCCcEEEEcCccccCccCCHHHc--cEEEEeccccccCCceEEEEECHHHHhhcccCCChHHHHHHHHh
Confidence 67766 89999999999999999999876 5999999998899999999999998877766321111 12
Q ss_pred ccCCCCCcchhHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecC-CcHH
Q psy15216 1625 YGLRSGTLATHQIVGMGEAFRLAR-I-EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI-EGES 1701 (2602)
Q Consensus 1625 ~~~~~gt~~~~~~~al~~aL~~~~-~-~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~-~~~~ 1701 (2602)
....++||++..++++.++|+++. . +++++.+|++++++++++.|.+ ++.+..+.++..+++..+.|.++.. ...+
T Consensus 232 ~~~~~~Tp~~~~i~aL~~aL~~i~~~gG~e~i~~r~~~l~~~l~~~l~~-~~~~~~~~~~~~rs~~v~sf~~~~~~~~~~ 310 (360)
T PRK05355 232 NDSMYNTPPTFAIYLAGLVFKWLKEQGGVAAMEKRNQEKAALLYDAIDS-SDFYRNPVAPEDRSRMNVPFTLADEELDKK 310 (360)
T ss_pred cCCccCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHh-CCCcccCCChhhcCCcEEEEEcCChHHHHH
Confidence 233468999999999999999655 5 6999999999999999999998 4422232222234444455555542 1123
Q ss_pred HHHhcCCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1702 LLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1702 ~~~~L~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
+...+ .+.|.+|...+. ..+.+|+|++.|||.+||++++++|++
T Consensus 311 ~~~~~----~~~Gi~~~~~~~---------------~~g~vRiS~~~~nt~eei~~l~~~l~~ 354 (360)
T PRK05355 311 FLAEA----KAAGLVGLKGHR---------------SVGGMRASIYNAMPLEGVQALVDFMKE 354 (360)
T ss_pred HHHHH----HHCCCcccCCCC---------------ccCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 32332 233444422100 127899999999999999999999997
|
|
| >PTZ00094 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.1e-24 Score=279.49 Aligned_cols=334 Identities=19% Similarity=0.226 Sum_probs=251.9
Q ss_pred CCCCHHHHHHHHHHHhhcc--CCCCCccchhHHHHHHHHH-HHHHHHHHHhCCCCCcEEEe---CCHHHHHHHHHHhhhh
Q psy15216 1403 TPIDPRVVDKMIPYLRVQF--GNPASRNHIYGWTAEKAIE-KARNEVAQLIYADPREIIWT---SGATESNNLAIKGAAH 1476 (2602)
Q Consensus 1403 ~~~~~~v~eal~~~l~~~~--~np~~~~~~~~~~~~~~~~-~lr~~ia~~~g~~~~~iv~t---~gaT~al~~al~~l~~ 1476 (2602)
...++.+++++...+.+.+ +||++ .|..+......++ .+|+.++++||++++++.++ +|+++|++.++.++.
T Consensus 44 n~~s~~v~~~~~~~l~~~y~~g~p~s-~~~~g~~~~~~iE~~ar~~~a~lf~a~~~~~~~~~~~~sgt~an~~v~~al~- 121 (452)
T PTZ00094 44 NFTSRAVLECLGSCFTNKYAEGLPGN-RYYGGNEVVDKIENLCQKRALEAFGLDPEEWGVNVQPYSGSPANFAVYTALL- 121 (452)
T ss_pred ccCCHHHHHHhcchhhccccCCCCCc-cccccchHHHHHHHHHHHHHHHHhCCCcccceeecCCCchHHHHHHHHHHhc-
Confidence 4677889999999998877 89987 5666666666666 48999999999988887677 789999999999986
Q ss_pred hhccCCCEEEEcCCCCcchHHHHHHHHh-------CCcEEEEeccCCCCCcChhHHHhhccC-CceEEEEeccccccccc
Q psy15216 1477 FYKKRGKHIITVQTEHKSVLDSIRKLEN-------DGFRVTYLKPKNNGLITLSQLEEKICS-DTILVSVMLVNNEIGVI 1548 (2602)
Q Consensus 1477 ~~~~~gd~Vlv~~~~~~s~~~~~~~~~~-------~G~~v~~v~~~~~~~id~d~l~~~i~~-~t~lv~l~~~~n~tG~~ 1548 (2602)
++||+|++++.+|+++...+..++. .+..+..+++++++.+|+++|++++.+ +++++++. ++.+|..
T Consensus 122 ---~~gd~Ii~~~~ehg~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~id~~~L~~~l~~~~~~lvi~~--~s~~g~~ 196 (452)
T PTZ00094 122 ---QPHDRIMGLDLPSGGHLTHGFYTAKKKVSATSIYFESLPYQVNEKGLIDYDKLEELAKAFRPKLIIAG--ASAYPRD 196 (452)
T ss_pred ---CCCCEEEecccccCCcccccccccccccccceeeeeeeecccCCCCCcCHHHHHHHHHHhCCCEEEEe--CCCCCCc
Confidence 8999999999999998776643311 123444555676789999999999964 67777654 3459999
Q ss_pred cChHHHHHHhhhcCCEEEEecccccCcccccCCC---CCccEEEEcccc-ccCCCceEEEEEecCCCCccccccccCCcc
Q psy15216 1549 QPILEIGELCRSKGVIFHCDAAQAVGKIDINIQN---YKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGHE 1624 (2602)
Q Consensus 1549 ~~l~~I~~ia~~~gi~vivD~a~~~g~~~~~l~~---~~~D~~v~S~~K-~~gp~G~G~l~~~~~~~~~l~~~~~g~~~~ 1624 (2602)
.|+++|.++|+++|+++++|++|++|.++.++.. .++|++++|+|| ++||.| |+++++++..+.+.+.......
T Consensus 197 ~di~~I~~i~~~~ga~l~vDaaq~~G~i~~~~~~~~~~~~D~l~~S~hK~l~GP~G-g~l~~~~~~~~~l~~~~~~~~~- 274 (452)
T PTZ00094 197 IDYKRFREICDSVGAYLMADIAHTSGLVAAGVLPSPFPYADVVTTTTHKSLRGPRS-GLIFYRKKVKPDIENKINEAVF- 274 (452)
T ss_pred cCHHHHHHHHHHcCCEEEEeccchhccccCCCCCCCCCCCcEEEcCCccCCCCCCc-eEEEEecccchHHHHhhccccC-
Confidence 9999999999999999999999999998765432 258999999999 668998 8888887655433222111111
Q ss_pred ccCCCCCcchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEE--ecCCcHH
Q psy15216 1625 YGLRSGTLATHQIVGMGEAFRLAR-IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISF--NFIEGES 1701 (2602)
Q Consensus 1625 ~~~~~gt~~~~~~~al~~aL~~~~-~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~--~~~~~~~ 1701 (2602)
..+ .|+++...++++.+++++.. .+.+.+.++..++++++.+.|.+ .|+.+..+... .....+.+ ++.+...
T Consensus 275 p~~-~G~~~~~~iaal~~al~~~~~~~~~~~~~~i~~l~~~l~~~L~~--~g~~v~~~~~~--~~~~~v~~~~~~~~~~~ 349 (452)
T PTZ00094 275 PGL-QGGPHNHQIAAIAVQLKEVQSPEWKEYAKQVLKNAKALAAALEK--RGYDLVTGGTD--NHLVLVDLRPFGITGSK 349 (452)
T ss_pred CCC-CCCchHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHh--CCcEEecCCCC--CceEeecCCcCCCCHHH
Confidence 112 47888999999999999764 56788899999999999999987 47777653222 12333344 3445566
Q ss_pred HHHhc--CCEEE-ccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCC----HHHHHHHHHHHHHh
Q psy15216 1702 LLMAI--KDIAV-SSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTT----EKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1702 ~~~~L--~gI~v-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t----~edid~li~~L~~~ 1765 (2602)
+...| +||.+ +.+.+|.+. ....++||+|++.+|| ++||++++++|++.
T Consensus 350 ~~~~L~~~gI~vs~~~~p~~~~---------------~~~~~~vRis~~~~tt~g~~~~di~~l~~~l~~~ 405 (452)
T PTZ00094 350 MEKLLDAVNISVNKNTIPGDKS---------------ALNPSGVRLGTPALTTRGAKEKDFKFVADFLDRA 405 (452)
T ss_pred HHHHHHHCCcEEecccCCCCCc---------------CCCCCeEEECCHHHHhCCCCHHHHHHHHHHHHHH
Confidence 66666 69998 455555432 0113789999999987 99999999999873
|
|
| >TIGR01788 Glu-decarb-GAD glutamate decarboxylase | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.8e-23 Score=266.41 Aligned_cols=337 Identities=14% Similarity=0.094 Sum_probs=246.0
Q ss_pred CCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCC-C-CcEEE--eCCHHHHHHHHHHhhhhh
Q psy15216 1402 TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYAD-P-REIIW--TSGATESNNLAIKGAAHF 1477 (2602)
Q Consensus 1402 ~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~-~-~~iv~--t~gaT~al~~al~~l~~~ 1477 (2602)
+++..+.+.+.+...+...++||++. +.. .+..+++++++++++|++ + +++.+ |+|+|+|+++++.++...
T Consensus 50 tt~~~p~~~~~~~~~l~~~~~np~s~----~~~-~~le~~~~~~la~llg~~~~~~~~~g~~TsGgTEAn~~al~~ar~~ 124 (431)
T TIGR01788 50 TTWMEPEARKLMDETINKNMIDKDEY----PQT-AEIENRCVNMLADLWHAPAKDAEAVGTSTIGSSEAIMLGGLAMKWR 124 (431)
T ss_pred CCCCCHHHHHHHHHHHhcCCCCcccC----ccH-HHHHHHHHHHHHHHhCCCCCCCCCeEEEechHHHHHHHHHHHHHHH
Confidence 46777789999999998777888762 222 378999999999999997 3 46655 899999999999876421
Q ss_pred hc----cC-----CCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCC-CCcChhHHHhhccCCceEEEEecccccccc
Q psy15216 1478 YK----KR-----GKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN-GLITLSQLEEKICSDTILVSVMLVNNEIGV 1547 (2602)
Q Consensus 1478 ~~----~~-----gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~-~~id~d~l~~~i~~~t~lv~l~~~~n~tG~ 1547 (2602)
.. +. ..+|++++.+|+++..+...+ |+++++++++++ +.+|+++|+++|+++|.+|++++++|.||.
T Consensus 125 ~~~~~~~~g~~~~~~~ii~s~~~H~sv~ka~~~l---g~~v~~i~~d~~~~~vd~~~L~~~i~~~t~lV~~t~g~t~tG~ 201 (431)
T TIGR01788 125 WRKRMEAAGKPTDKPNLVMGSNVQVCWEKFARYF---DVELREVPMDPGRYVIDPEQVVEAVDENTIGVVCILGTTYTGE 201 (431)
T ss_pred HHHHHHhcCCCCCCcEEEEcCcchHHHHHHHHHc---CceeEEEecCCCceeeCHHHHHHHHhhCCeEEEEEeCCCCCcc
Confidence 10 11 247999999999998877666 899999999875 589999999999999999999999999999
Q ss_pred ccChHHHHHHhhhc------CCEEEEeccccc-------CcccccCCCCCccEEEEcccccc-CCCceEEEEEecC--CC
Q psy15216 1548 IQPILEIGELCRSK------GVIFHCDAAQAV-------GKIDINIQNYKVDLMSFSAHKIY-GPKGIGALYIRRN--PR 1611 (2602)
Q Consensus 1548 ~~~l~~I~~ia~~~------gi~vivD~a~~~-------g~~~~~l~~~~~D~~v~S~~K~~-gp~G~G~l~~~~~--~~ 1611 (2602)
+.|+++|+++|+++ |+|+|+|+||+. +..+.++...++|.+++|+||++ ||.|+|+++++++ +.
T Consensus 202 idpi~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~~~~~~~~~~~DSis~s~HK~~~~P~g~G~l~~r~~~~l~ 281 (431)
T TIGR01788 202 YEDVKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPDLEWDFRLPRVKSINVSGHKYGLVYPGVGWVIWRDEEALP 281 (431)
T ss_pred cCCHHHHHHHHHHHHhhhCCCceEEEecccHHHHHHHhCCCchhhcCCCCceEEEECchhccCCCCCcEEEEEeChHHcc
Confidence 99999999999999 999999999994 44445555557888999999954 9999999999875 22
Q ss_pred Cccc--cccccCCccccCCCCCcchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCc
Q psy15216 1612 TRIE--AQIHGGGHEYGLRSGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPH 1688 (2602)
Q Consensus 1612 ~~l~--~~~~g~~~~~~~~~gt~~~~~~~al~~aL~-~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~ 1688 (2602)
..+. +.+.++........++.+.....++...|. +...++.++.++..++++++.++|.+ .+++++..+.. ...
T Consensus 282 ~~~~~~~~yl~~~~~~~t~~~sR~g~~al~~w~~l~~lG~~G~~~i~~~~~~la~~l~~~L~~-~~~~el~~~~~--~~~ 358 (431)
T TIGR01788 282 EELIFHVNYLGGDEPTFTLNFSRPANQVIAQYYNFLRLGREGYRKIMQNSLDVARYLAEEIAK-LGPFEIISDGS--GIP 358 (431)
T ss_pred hhheecccccCCCCCCcceecCchHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHh-CCCEEEeeCCC--Cce
Confidence 2221 123333221111123333333334445555 44578999999999999999999988 78899886521 134
Q ss_pred eEEEEEec-----CCcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHH
Q psy15216 1689 NLNISFNF-----IEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKL 1761 (2602)
Q Consensus 1689 ~~~~~~~~-----~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~ 1761 (2602)
++.|.+.. .+..++...| +|+.+..-. .+. .+. ..-.+|+++.+..+.+.++++++.
T Consensus 359 iV~Fr~~~~~~~~~~~~~l~~~L~~~G~~~~~~~---~p~----------~~~---~~~~lR~~~~~~~~~~~~~~~~~~ 422 (431)
T TIGR01788 359 LVAFKLKDDADPGYTLYDLSHRLRERGWIVPAYT---LPK----------NAE---DIVVMRIVVREGFSRDLAELLIED 422 (431)
T ss_pred EEEEEeCCCCCCCcCHHHHHHHHHHCCCcccCCC---CCC----------ccC---CeEEEEEEecCCCCHHHHHHHHHH
Confidence 45555543 2334566666 565542111 110 000 114689999888999999999999
Q ss_pred HHHh
Q psy15216 1762 LKMK 1765 (2602)
Q Consensus 1762 L~~~ 1765 (2602)
|++.
T Consensus 423 ~~~~ 426 (431)
T TIGR01788 423 IEAA 426 (431)
T ss_pred HHHH
Confidence 9863
|
This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA). |
| >COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-23 Score=263.68 Aligned_cols=313 Identities=19% Similarity=0.212 Sum_probs=250.6
Q ss_pred CCCCCCC-CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhC-CCCCcEEEeCCHHHHHHHHHHhc
Q psy15216 1 MDYSATT-PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIY-ADPREIIWTSGATESNNLAIKGA 78 (2602)
Q Consensus 1 Ld~a~~~-~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g-~~~~~Iv~t~g~T~al~~~~~~l 78 (2602)
|+.+.+. ++|+.+.+++.+.+...+.||+. ...++++++++++| .++++|+.++|+++.|.++++++
T Consensus 27 LssNenP~gp~~~~~~~~~~~~~~~~rYPd~-----------~~~~l~~a~a~~~~~~~~~~V~~gnGsde~i~~l~~~~ 95 (356)
T COG0079 27 LSSNENPYGPPPKVIEAIRAALDKLNRYPDP-----------DYRELRAALAEYYGVVDPENVLVGNGSDELIELLVRAF 95 (356)
T ss_pred ecCCCCCCCCCHHHHHHHHHHHHhhccCCCC-----------cHHHHHHHHHHHhCCCCcceEEEcCChHHHHHHHHHHh
Confidence 4555666 66789999999988777778875 35788999999999 78889999999999999999999
Q ss_pred ccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHH
Q psy15216 79 AHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEI 158 (2602)
Q Consensus 79 ~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I 158 (2602)
. .+||.|+++.|+|+.|...++.. |++++.++..+ +.+|++.+.+.+++++++|++||||||||..++.++|
T Consensus 96 ~----~~gd~vl~~~Ptf~~Y~~~a~~~---g~~~~~v~~~~-~~~d~~~~~~~~~~~~~lv~i~nPNNPTG~~~~~~~l 167 (356)
T COG0079 96 V----EPGDTVLIPEPTFSMYEIAAQLA---GAEVVKVPLKE-FRLDLDAILAAIRDKTKLVFLCNPNNPTGTLLPREEL 167 (356)
T ss_pred h----cCCCEEEEcCCChHHHHHHHHhc---CCeEEEecccc-cccCHHHHHHhhhcCCCEEEEeCCCCCCCCCCCHHHH
Confidence 9 89999999999999998888777 99999999888 9999999999999999999999999999999999998
Q ss_pred HHHHHhc--CCEEEEecccccccc--cccCCCCCc-cEEEeccccccCCCC--cEEEEEecCCCCcccceecCCCccccc
Q psy15216 159 GELCRSK--GVIFHCDAAQAVGKI--DINIQNYKV-DLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGL 231 (2602)
Q Consensus 159 ~~la~~~--g~~livD~a~a~g~~--~~dl~~~~~-D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~ 231 (2602)
.+++... +.++++|+|+.--.. .+.+..... -+++.||+|.||++| +||++.++++++.+....
T Consensus 168 ~~l~~~~~~~~~vVvDEAY~eF~~~~~~~l~~~~~nlivlRTfSKa~gLAGlRlGy~ia~~~~i~~l~~vr--------- 238 (356)
T COG0079 168 RALLEALPEGGLVVIDEAYIEFSPESSLELLKYPPNLIVLRTFSKAFGLAGLRVGYAIANPELIAALNKVR--------- 238 (356)
T ss_pred HHHHHhCCCCcEEEEeCchhhcCCchhhhhccCCCCEEEEEecHHhhhcchhceeeccCCHHHHHHHHHhc---------
Confidence 8888754 889999999853221 122222223 477779999999999 899999999988887655
Q ss_pred cccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceE-EeCCCCCCCCceEEEEEcccChhHHHHHh
Q psy15216 232 RSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIY-INGDMNNRIPHNLNISFNFIEGESLLMAI 310 (2602)
Q Consensus 232 ~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~L 310 (2602)
.+++.+.++..++.++++.. +++++..++....++++.+.|+. ++ +. ++... .+++.+.++......+.+.|
T Consensus 239 ~p~~v~~~a~~aa~aal~~~-~~~~~~~~~~~~~r~rl~~~l~~-~~-~~~v~pS~----aNFvlv~~~~~~~~~l~~~L 311 (356)
T COG0079 239 PPFNVSSPALAAAIAALRDA-DYLEESVERIREERERLYAALKA-LG-LFGVFPSQ----ANFVLVRVPDAEAAALAEAL 311 (356)
T ss_pred CCCCCCHHHHHHHHHHcccH-HHHHHHHHHHHHHHHHHHHHHHh-CC-CCeecCCC----CcEEEEECCCccHHHHHHHH
Confidence 35577888888887888744 67889999999999999999988 44 44 44332 34455555431244566677
Q ss_pred --CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 311 --KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 311 --~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
+||.+|.... .+ ...+++||+++ |++|.++++++|++.
T Consensus 312 ~~~giivR~~~~-~~-----------------~~~~~lRitvg---t~een~~ll~AL~~~ 351 (356)
T COG0079 312 LKKGILVRDCSS-VG-----------------LLPGYLRITVG---TPEENDRLLAALREV 351 (356)
T ss_pred HHCCEEEEeCCC-CC-----------------CCCCeEEEEeC---CHHHHHHHHHHHHHH
Confidence 7999995543 11 12379999999 999999999999964
|
|
| >PRK13520 L-tyrosine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-23 Score=272.57 Aligned_cols=326 Identities=18% Similarity=0.177 Sum_probs=246.1
Q ss_pred CCCCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhccccccc
Q psy15216 5 ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKK 84 (2602)
Q Consensus 5 ~~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~ 84 (2602)
.++++.+.+++++.+++....+++.. + .......+++++++++++|+++.++++++|+|+++..++.++....+.
T Consensus 28 ~~~~~~~~~~~a~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~la~~~g~~~~~~~~~~ggt~a~~~a~~~~~~~~~~ 102 (371)
T PRK13520 28 MCTEPHPIARKAHEMFLETNLGDPGL--F---PGTAKLEEEAVEMLGELLHLPDAYGYITSGGTEANIQAVRAARNLAKA 102 (371)
T ss_pred eecCchHHHHHHHHHHHhcCCCCccc--C---ccHHHHHHHHHHHHHHHhCCCCCCeEEecCcHHHHHHHHHHHHhhccC
Confidence 35678888899999988764444432 1 124556789999999999998778899999999999998877522224
Q ss_pred CCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHh
Q psy15216 85 RGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRS 164 (2602)
Q Consensus 85 ~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~ 164 (2602)
++++|++++++|+++...++. .|++++.++.++++.+|+++|++++++++++|++++++|+||.+.|+++|.++|++
T Consensus 103 ~~~~vl~~~~~h~s~~~~~~~---~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~vi~~~~~~~tG~~~~l~~I~~l~~~ 179 (371)
T PRK13520 103 EKPNIVVPESAHFSFDKAADM---LGVELRRAPLDDDYRVDVKAVEDLIDDNTIGIVGIAGTTELGQVDPIPELSKIALE 179 (371)
T ss_pred CCceEEecCcchHHHHHHHHH---cCceEEEecCCCCCcCCHHHHHHHHhhCCEEEEEEcCCcCCcccCCHHHHHHHHHH
Confidence 689999999999986655543 49999999988888899999999999899888899999999999999999999999
Q ss_pred cCCEEEEeccccccccc-------ccCCCCCccEEEecccccc-CCCCcEEEEEec-CCCCccc---ceecCCCcccccc
Q psy15216 165 KGVIFHCDAAQAVGKID-------INIQNYKVDLMSFSAHKIY-GPKGIGALYIRR-NPRTRIE---AQIHGGGHEYGLR 232 (2602)
Q Consensus 165 ~g~~livD~a~a~g~~~-------~dl~~~~~D~~~~S~~K~~-Gp~G~G~l~~~~-~~~~~l~---~~~~g~~~~~~~~ 232 (2602)
+|+++++|++|+.+..+ +++...++|++++|+||+. +|.++|++++++ ++.+.+. |...+.. +...
T Consensus 180 ~g~~livD~a~~~~~~~~~~~~~~~~~~~~~vd~~~~s~~K~~~a~~~~G~~~~~~~~~~~~l~~~~~~~~~~~--~~~~ 257 (371)
T PRK13520 180 NGIFLHVDAAFGGFVIPFLDDPPNFDFSLPGVDSITIDPHKMGLAPIPAGGILFRDESYLDALAVDTPYLTSKK--QATL 257 (371)
T ss_pred cCCCEEEEecchhHHHHhhcCCCCccccCCCCceEEECCccccCccCCceEEEEcCHHHHHhhcccCccccCCC--Ccce
Confidence 99999999999866433 3334457899999999964 455678777654 3444432 2221111 1123
Q ss_pred ccCcchhHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcccChhHHHHHh-
Q psy15216 233 SGTLATHQIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI- 310 (2602)
Q Consensus 233 ~gt~~~~~~~al~~al~~~-~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L- 310 (2602)
.||++...++++.++++.. ..++++..++..++++++.+.|.+ + |+++..++. .+++.+.++ +..++...|
T Consensus 258 ~gt~~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~---~~~v~~~~~--~~~~v~~~L~ 330 (371)
T PRK13520 258 TGTRSGAGVAATYAVMKYLGREGYRKVVERCMENTRWLAEELKE-R-GFEPVIEPV---LNIVAFDDP--NPDEVREKLR 330 (371)
T ss_pred EeeccChHHHHHHHHHhhhcHhHHHHHHHHHHHHHHHHHHHHHh-C-CCEEecCCC---ceEEEEecC--CHHHHHHHHH
Confidence 5677777788888888843 456788999999999999999987 4 777432221 234444443 566777777
Q ss_pred -CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 311 -KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 311 -~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
+||.++.. .. .+++|+|+++++|++||++++++|++.
T Consensus 331 ~~gi~v~~~---~~-------------------~~~iRis~~~~~t~edi~~~~~~l~~~ 368 (371)
T PRK13520 331 ERGWRVSVT---RC-------------------PEALRIVCMPHVTREHIENFLEDLKEV 368 (371)
T ss_pred HCCceeccC---CC-------------------CCEEEEEEECCCCHHHHHHHHHHHHHH
Confidence 68888642 11 167999999999999999999999863
|
|
| >PRK13520 L-tyrosine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.9e-23 Score=270.07 Aligned_cols=349 Identities=17% Similarity=0.182 Sum_probs=255.9
Q ss_pred cccHHHHHHHHHhcCCCccccceeeeeceeeeccCCCCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHH
Q psy15216 1366 PSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNE 1445 (2602)
Q Consensus 1366 ~~~~~~v~~aL~~~g~~~~~~ei~~iP~~~v~L~~~~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ 1445 (2602)
++++-..-+.|.+.++.+.. .++...++..+.+++++.+++....+++.. + .......++++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~ 67 (371)
T PRK13520 4 EEEILEELEEYRSEDLKYER-----------ILSSMCTEPHPIARKAHEMFLETNLGDPGL--F---PGTAKLEEEAVEM 67 (371)
T ss_pred HHHHHHHHHHHHhcCCCHHH-----------eeeeeecCchHHHHHHHHHHHhcCCCCccc--C---ccHHHHHHHHHHH
Confidence 34444455566666666541 133334677778889999988765445432 2 1245567899999
Q ss_pred HHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHH
Q psy15216 1446 VAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQL 1525 (2602)
Q Consensus 1446 ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l 1525 (2602)
+++++|++++++++++|+|+++..++.++....++++++|++++++|+++....+. .|++++.++.++++.+|+++|
T Consensus 68 la~~~g~~~~~~~~~~ggt~a~~~a~~~~~~~~~~~~~~vl~~~~~h~s~~~~~~~---~g~~~~~v~~~~~~~~d~~~l 144 (371)
T PRK13520 68 LGELLHLPDAYGYITSGGTEANIQAVRAARNLAKAEKPNIVVPESAHFSFDKAADM---LGVELRRAPLDDDYRVDVKAV 144 (371)
T ss_pred HHHHhCCCCCCeEEecCcHHHHHHHHHHHHhhccCCCceEEecCcchHHHHHHHHH---cCceEEEecCCCCCcCCHHHH
Confidence 99999997778899999999999998877522224689999999999986655443 499999999888888999999
Q ss_pred HhhccCCceEEEEeccccccccccChHHHHHHhhhcCCEEEEecccccCccc-------ccCCCCCccEEEEcccccc-C
Q psy15216 1526 EEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKID-------INIQNYKVDLMSFSAHKIY-G 1597 (2602)
Q Consensus 1526 ~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~~ia~~~gi~vivD~a~~~g~~~-------~~l~~~~~D~~v~S~~K~~-g 1597 (2602)
++++++++++|++++++|+||.+.|+++|.++|++||+++++|++|+.+..+ +++...++|++++|+||+. +
T Consensus 145 ~~~i~~~~~~vi~~~~~~~tG~~~~l~~I~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~~vd~~~~s~~K~~~a 224 (371)
T PRK13520 145 EDLIDDNTIGIVGIAGTTELGQVDPIPELSKIALENGIFLHVDAAFGGFVIPFLDDPPNFDFSLPGVDSITIDPHKMGLA 224 (371)
T ss_pred HHHHhhCCEEEEEEcCCcCCcccCCHHHHHHHHHHcCCCEEEEecchhHHHHhhcCCCCccccCCCCceEEECCccccCc
Confidence 9999999998899999999999999999999999999999999999866433 2333457899999999954 4
Q ss_pred CCceEEEEEecC-CCCccc---cccccCCccccCCCCCcchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhc
Q psy15216 1598 PKGIGALYIRRN-PRTRIE---AQIHGGGHEYGLRSGTLATHQIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMES 1672 (2602)
Q Consensus 1598 p~G~G~l~~~~~-~~~~l~---~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~-~~~~~~~~~~~~~l~~~l~~~L~~~ 1672 (2602)
|.++|+++++++ +++.+. +...+.. .....||++...++++.++++.+ ..++++..++..++++++++.|.+
T Consensus 225 ~~~~G~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~gt~~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~- 301 (371)
T PRK13520 225 PIPAGGILFRDESYLDALAVDTPYLTSKK--QATLTGTRSGAGVAATYAVMKYLGREGYRKVVERCMENTRWLAEELKE- 301 (371)
T ss_pred cCCceEEEEcCHHHHHhhcccCccccCCC--CcceEeeccChHHHHHHHHHhhhcHhHHHHHHHHHHHHHHHHHHHHHh-
Confidence 666787777543 444332 2111111 11234677777788888888844 456788999999999999999987
Q ss_pred CCcEEEeCCCCCCCCceEEEEEecCCcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCC
Q psy15216 1673 IEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFT 1750 (2602)
Q Consensus 1673 ~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~ 1750 (2602)
. ++.+..++. .++..+.++ +..++...| +||.++... . .+++|+|+++++
T Consensus 302 ~-g~~~~~~~~---~~~v~~~~~--~~~~v~~~L~~~gi~v~~~~---~-------------------~~~iRis~~~~~ 353 (371)
T PRK13520 302 R-GFEPVIEPV---LNIVAFDDP--NPDEVREKLRERGWRVSVTR---C-------------------PEALRIVCMPHV 353 (371)
T ss_pred C-CCEEecCCC---ceEEEEecC--CHHHHHHHHHHCCceeccCC---C-------------------CCEEEEEEECCC
Confidence 4 776332221 223333333 566677666 688876421 1 167999999999
Q ss_pred CHHHHHHHHHHHHH
Q psy15216 1751 TEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1751 t~edid~li~~L~~ 1764 (2602)
|++||++++++|++
T Consensus 354 t~edi~~~~~~l~~ 367 (371)
T PRK13520 354 TREHIENFLEDLKE 367 (371)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999999986
|
|
| >TIGR02529 EutJ ethanolamine utilization protein EutJ family protein | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.6e-24 Score=255.65 Aligned_cols=205 Identities=23% Similarity=0.309 Sum_probs=176.9
Q ss_pred ceeCHHHHHHHHHHHHHHHHHHhhccccceEEEeeCCCCCHHHHHHHHHHHHHcCCceeEeechhHHHHHHhhhccCCCC
Q psy15216 2134 GIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFE 2213 (2602)
Q Consensus 2134 ~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~l~~Aa~~AGl~~~~li~EP~AAAl~y~~~~~~~~ 2213 (2602)
+.....+..+++|+++++.++.+++.++.++|+|||++|++.||+++.+|++.||++++.+++||.|||++|+..
T Consensus 34 g~I~d~~~~~~~l~~l~~~a~~~~g~~~~~vvisVP~~~~~~~r~a~~~a~~~aGl~~~~li~ep~Aaa~~~~~~----- 108 (239)
T TIGR02529 34 GIVVDFLGAVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAAAAVLQIK----- 108 (239)
T ss_pred CeEEEhHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCcccHHHHHHHHHHcCCceEEEeehHHHHHHHhcCC-----
Confidence 344556889999999999999999998999999999999999999999999999999999999999999998643
Q ss_pred ceEEEEEeCCceEEEEEEEEeCCEEEEEEEecCCCCchhHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhccc
Q psy15216 2214 GIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQ 2293 (2602)
Q Consensus 2214 ~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~ 2293 (2602)
..+|+|+||||+|+++++.. . ++. .++..+||++||+.|.+++.-. ..++|++|+.++
T Consensus 109 -~~~vvDiGggtt~i~i~~~G--~--i~~-~~~~~~GG~~it~~Ia~~~~i~--------------~~~AE~~K~~~~-- 166 (239)
T TIGR02529 109 -NGAVVDVGGGTTGISILKKG--K--VIY-SADEPTGGTHMSLVLAGAYGIS--------------FEEAEEYKRGHK-- 166 (239)
T ss_pred -CcEEEEeCCCcEEEEEEECC--e--EEE-EEeeecchHHHHHHHHHHhCCC--------------HHHHHHHHHhcC--
Confidence 24899999999999997643 2 333 3457899999999887554311 267899998654
Q ss_pred ceEEEEEEecCCceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccceEEEEeCccchHHHHHHHHhhcCCcc
Q psy15216 2294 SSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTL 2373 (2602)
Q Consensus 2294 ~~~~~~i~~~~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~ 2373 (2602)
+.+++.++++++++++.+.+++.|++. .++.|+|+||+|++|.+++.+++.|+.++
T Consensus 167 -------------------~~~~~~~~i~~~~~~i~~~i~~~l~~~-----~~~~v~LtGG~a~ipgl~e~l~~~lg~~v 222 (239)
T TIGR02529 167 -------------------DEEEIFPVVKPVYQKMASIVKRHIEGQ-----GVKDLYLVGGACSFSGFADVFEKQLGLNV 222 (239)
T ss_pred -------------------CHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCEEEEECchhcchhHHHHHHHHhCCCc
Confidence 245678899999999999999999865 45789999999999999999999999999
Q ss_pred cCCCCccchhhhHHHH
Q psy15216 2374 LTSIDPDKAVVFGAAI 2389 (2602)
Q Consensus 2374 ~~~~~p~~aVa~GAa~ 2389 (2602)
..+.||++++|.|||+
T Consensus 223 ~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 223 IKPQHPLYVTPLGIAM 238 (239)
T ss_pred ccCCCCCeehhheeec
Confidence 9999999999999986
|
|
| >PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.7e-23 Score=268.16 Aligned_cols=328 Identities=16% Similarity=0.162 Sum_probs=239.0
Q ss_pred CCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccC
Q psy15216 1402 TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKR 1481 (2602)
Q Consensus 1402 ~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~ 1481 (2602)
..|.++.+++++.++.. .+++|++-.|..+......+.++|+.+++++|++ ++++++|+|+|++.++.++. ++
T Consensus 29 ~~p~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~lA~~~g~~--~~~~~~g~t~a~~~al~~l~----~~ 101 (387)
T PRK09331 29 GGILTPEARKALIEYGD-GYSVCDYCPGRLDQIKKPPIADFHEDLAEFLGMD--EARVTHGAREGKFAVMHSLC----KK 101 (387)
T ss_pred CCCCCHHHHHHHHHHHh-ccCCCcccccccccccChHHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHhc----CC
Confidence 36888999999999884 4456543123344444557899999999999985 58889999999999999987 89
Q ss_pred CCEEEEcCCCCcchHHHHHHHHhCCcEEEEecc--CCCCCcChhHHHhhccC-------CceEEEEeccccccccccChH
Q psy15216 1482 GKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP--KNNGLITLSQLEEKICS-------DTILVSVMLVNNEIGVIQPIL 1552 (2602)
Q Consensus 1482 gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~--~~~~~id~d~l~~~i~~-------~t~lv~l~~~~n~tG~~~~l~ 1552 (2602)
||+|+++.++|++....+. ..|+++++++. ++++.+|++++++++++ ++++|+++|++|+||.+.|++
T Consensus 102 gd~Vlv~~~~h~s~~~~~~---~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lV~l~~~~~~tG~~~~l~ 178 (387)
T PRK09331 102 GDYVVLDGLAHYTSYVAAE---RAGLNVREVPKTGYPEYKITPEAYAEKIEEVKEETGKPPALALLTHVDGNYGNLADAK 178 (387)
T ss_pred CCEEEECCCchHHHHHHHH---HcCCEEEEEeCccCcCCCcCHHHHHHHHHHhhhccCCCCEEEEEECCCCCCcccccHH
Confidence 9999999999999876544 44999999998 66788999999999863 689999999999999999999
Q ss_pred HHHHHhhhcCCEEEEecccccCcccccCCCCCccEEEEcccc-ccCCCceEEEEEecCCCCccccccccCCc-cccCCCC
Q psy15216 1553 EIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGH-EYGLRSG 1630 (2602)
Q Consensus 1553 ~I~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K-~~gp~G~G~l~~~~~~~~~l~~~~~g~~~-~~~~~~g 1630 (2602)
+|.++|++||+++++|++|+.|..+++...+++|++++|+|| +.+|+|+|++++++++++.+.....+... ...+..+
T Consensus 179 ~I~~la~~~g~~livD~a~~~g~~~~~~~~~g~D~~~~s~~K~l~~~~~~G~l~~~~~~i~~~~~~~~~~~~~~~~~~~~ 258 (387)
T PRK09331 179 KVAKVAHEYGIPFLLNGAYTVGRMPVDGKKLGADFIVGSGHKSMAASAPSGVLATTEEYADKVFRTSRKFGVKEVELLGC 258 (387)
T ss_pred HHHHHHHHcCCEEEEECCcccCCcCCCHHHcCCCEEEeeCcccccCCCCEEEEEECHHHHhhcccccCCCcccceeeece
Confidence 999999999999999999999999998888899999999999 45677899999998876665432211110 0011122
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecC---------CcHH
Q psy15216 1631 TLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI---------EGES 1701 (2602)
Q Consensus 1631 t~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~---------~~~~ 1701 (2602)
+.+....+++.++++...... ...++..++++++++.|.+ ++|+.++.... ..+++..+..+.. ....
T Consensus 259 ~~~~~~~~~~~aal~~~~~~~-~~~~~~~~~~~~l~~~L~~-l~g~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~ 335 (387)
T PRK09331 259 TLRGAPLVTLMASFPHVVERV-KRWDEEVKKARWFVDELEK-IEGFKQLGEKP-RNHDLMKFETPSFDEIAKKHKRRGFF 335 (387)
T ss_pred ecCchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhc-CCCEEEeccCc-CcCCeEEEeCCchhHHhhhccccchh
Confidence 333344455556666444333 3455667788899999987 77999885321 1233433443321 1133
Q ss_pred HHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1702 LLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1702 ~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
+...| +||..... .. ...+|+.... .|.+|+++++++|++.
T Consensus 336 ~~~~L~~~gI~~~~~---~~-------------------~~i~ri~~~g-~t~~di~~l~~aL~~i 378 (387)
T PRK09331 336 LYEELKKRGIHGIKP---GA-------------------TKEFKLSTYG-LTWEQVEYVADAFKEI 378 (387)
T ss_pred HHHHHHHcCceEEcc---CC-------------------ceEEEEEecc-CCHHHHHHHHHHHHHH
Confidence 55555 56652110 00 1456766533 6999999999999973
|
|
| >PLN03032 serine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.7e-23 Score=258.44 Aligned_cols=318 Identities=16% Similarity=0.180 Sum_probs=247.5
Q ss_pred CHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcE--EEeCCHHHHHHHHHHhcccccccCCC
Q psy15216 10 DPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREI--IWTSGATESNNLAIKGAAHFYKKRGK 87 (2602)
Q Consensus 10 p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~I--v~t~g~T~al~~~~~~l~~~~~~~gd 87 (2602)
...+++++..++...++||.+ .+.++.......+++++++++++|++++++ +||+|+|+|+..++.+.... .++.
T Consensus 36 ~~~~~~~~~~~~~~~~gnP~s-~~~~g~~a~~~e~~v~~~ia~llg~~~~~~~G~fTsGGTEaNl~al~~ar~~--~~~~ 112 (374)
T PLN03032 36 DYGELSQLMKYSINNLGDPFI-ESNYGVHSRQFEVGVLDWFARLWELEKDEYWGYITTCGTEGNLHGILVGREV--FPDG 112 (374)
T ss_pred ChHHHHHHHHhcccCCCCCcc-cCCCCccHHHHHHHHHHHHHHHhCCCCccCCEEEeCchHHHHHHHHHHHHHh--CCCc
Confidence 345788888888777899987 677788889999999999999999988765 99999999999988876521 2456
Q ss_pred EEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccC---CceEEEEecccCcccccccHHHHHHHHHh
Q psy15216 88 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS---DTILVSVMLVNNEIGVIQPILEIGELCRS 164 (2602)
Q Consensus 88 ~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~---~tklv~i~~~~npTG~~~~l~~I~~la~~ 164 (2602)
+|+++..+|+|+..+++.+ |..++.|+++++|.+|+++|+++|++ +|.+|++++.+|+||.+.|+++|+++|++
T Consensus 113 ~vi~s~~~H~Sv~kaa~~l---g~~~~~V~~d~~g~id~~~L~~~i~~~~~~~~lvv~tagtt~tG~idpi~eI~~i~~~ 189 (374)
T PLN03032 113 ILYASRESHYSVFKAARMY---RMEAVKVPTLPSGEIDYDDLERALAKNRDKPAILNVNIGTTVKGAVDDLDRILRILKE 189 (374)
T ss_pred EEEeCCCceeHHHHHHHHc---CCCCeEeeeCCCCcCcHHHHHHHHHHcCCCCEEEEEEecCcCCccCCCHHHHHHHHHH
Confidence 9999999999999988887 77788999999999999999999976 57899999999999999999999999999
Q ss_pred cC-----CEEEEecccccccccc-------cCCCCCccEEEeccccccC-CCCcEEEEEecCCCCcccceecCCCccccc
Q psy15216 165 KG-----VIFHCDAAQAVGKIDI-------NIQNYKVDLMSFSAHKIYG-PKGIGALYIRRNPRTRIEAQIHGGGHEYGL 231 (2602)
Q Consensus 165 ~g-----~~livD~a~a~g~~~~-------dl~~~~~D~~~~S~~K~~G-p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~ 231 (2602)
+| +|+|+|+|++.+..|+ ++. .++|.+++|+||++| |.|+|+++++++....+.............
T Consensus 190 ~g~~~~~~~lHvDaA~gg~~~p~~~~~~~~~~~-~~vDSis~s~HK~~g~P~g~G~ll~r~~~~~~~~~~~~Yl~~~d~t 268 (374)
T PLN03032 190 LGYTEDRFYIHCDGALFGLMMPFVSRAPEVTFR-KPIGSVSVSGHKFLGCPMPCGVALTRKKHVKALSQNVEYLNSRDAT 268 (374)
T ss_pred hCCCCCCeeEEEEccchhhhhhccCCCcccCCC-cCCcEEEECcccccCCCcCeEEEEEEchhhHhhccCCcccCCCCCc
Confidence 96 5999999999887774 443 368999999999887 999999999987665442111000111122
Q ss_pred cccCcchhHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcccChhHHHHHh
Q psy15216 232 RSGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI 310 (2602)
Q Consensus 232 ~~gt~~~~~~~al~~al~-~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L 310 (2602)
..|+.+-...++++++|+ +..+++.+..+++.++++++.++|.+ .+++++..| ...++.|.....+.+.
T Consensus 269 i~gSR~g~~~l~~w~~l~~~G~~g~~~~~~~~~~~a~~l~~~l~~--~~~~~~~~p-----~~~~V~f~~~~~~~~~--- 338 (374)
T PLN03032 269 IMGSRNGHAPLYLWYTLRRKGYRGIKRDVQHCMRNAHYLKDRLTE--AGLTCRLNE-----LSSTVVFERPMDEAFI--- 338 (374)
T ss_pred ccCCCchHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHh--CCCcEEECC-----CceEEEEcCCCcHhHh---
Confidence 345666566666777777 45578999999999999999999988 466665432 2334555544322221
Q ss_pred CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 311 KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 311 ~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
++..+. +. .+++|+.+.+..+.+.+|.|++-|++
T Consensus 339 ~~w~l~----~~--------------------~~~~hi~vm~~~~~~~id~fi~dl~~ 372 (374)
T PLN03032 339 KKWQLA----CE--------------------GDIAHVVVMPNVTVEKLDEFVEELVE 372 (374)
T ss_pred heeeec----cc--------------------CCEEEEEECCCCCHHHHHHHHHHHhc
Confidence 343332 10 15799999988999999999999885
|
|
| >cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.3e-23 Score=266.14 Aligned_cols=327 Identities=16% Similarity=0.158 Sum_probs=237.8
Q ss_pred CCCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccC
Q psy15216 6 TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKR 85 (2602)
Q Consensus 6 ~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~ 85 (2602)
..|..+.+++++.++... +++|+.-.+..+....+...++++++|+++|+ +++++++|+|+|+.+++.++. ++
T Consensus 10 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~--~~i~~~~g~t~al~~~l~~~~----~~ 82 (361)
T cd06452 10 GGRLTPEARKALIEWGDG-YSVCDFCRGRLDEIEKPPIKDFHHDLAEFLGM--DEARVTPGAREGKFAVMHSLC----EK 82 (361)
T ss_pred CCCCCHHHHHHHHHHhcc-cCCccccccccccccCchHHHHHHHHHHHcCC--ceEEEeCCHHHHHHHHHHHhc----CC
Confidence 357888899999888743 45554312223333345688999999999998 689999999999999999987 89
Q ss_pred CCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCC--ccChHHHHhhcc-------CCceEEEEecccCcccccccHH
Q psy15216 86 GKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNG--LITLSQLEEKIC-------SDTILVSVMLVNNEIGVIQPIL 156 (2602)
Q Consensus 86 gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~--~ld~e~l~~~i~-------~~tklv~i~~~~npTG~~~~l~ 156 (2602)
||+|+++.+.|.+....+ +..|++++.++.++++ .+|+++++++++ +++++|+++||+||||.+.|++
T Consensus 83 gd~Vl~~~~~~~~~~~~~---~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~tG~~~~~~ 159 (361)
T cd06452 83 GDWVVVDGLAHYTSYVAA---ERAGLNVREVPNTGHPEYHITPEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLHDAK 159 (361)
T ss_pred CCEEEEcCCcchHHHHHH---HhcCCEEEEEecCCCCCcccCHHHHHHHHHHHhhccCCCceEEEEECCCCCCeeeccHH
Confidence 999999999998876544 4459999999987654 899999999886 3789999999999999999999
Q ss_pred HHHHHHHhcCCEEEEecccccccccccCCCCCccEEEeccccccC-CCCcEEEEEecCCCCcccceecCCCccc-ccccc
Q psy15216 157 EIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYG-PKGIGALYIRRNPRTRIEAQIHGGGHEY-GLRSG 234 (2602)
Q Consensus 157 ~I~~la~~~g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K~~G-p~G~G~l~~~~~~~~~l~~~~~g~~~~~-~~~~g 234 (2602)
+|.++|+++|+++++|++|+.|..+++..+++.|++++|+||+++ |.++|++++++++++++......+.... ....+
T Consensus 160 ~i~~~~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~~~~~~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~ 239 (361)
T cd06452 160 KIAKVCHEYGVPLLLNGAYTVGRMPVSGKELGADFIVGSGHKSMAASAPIGVLATTEEWADIVFRTSQMFKIKEVELLGC 239 (361)
T ss_pred HHHHHHHHcCCeEEEECCcccCCcCCCHHHcCCCEEEecCCccccCCCCeEEEEECHHHHHHHhccccccccceeeeecc
Confidence 999999999999999999999988888777889999999999654 5569999999887776644322111111 11234
Q ss_pred CcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEccc---------ChhH
Q psy15216 235 TLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI---------EGES 305 (2602)
Q Consensus 235 t~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~---------~~~~ 305 (2602)
++.....+++.++++...+.++ ...+..+.++++++.|.+ ++|++++.+... .++++.+..+.. .+.+
T Consensus 240 ~~~~~~~~~~~~al~~~~~~~~-~~~~~~~~~~~l~~~L~~-l~g~~v~~~~~~-~~n~~~~~~~~~~~~~~~~~~~~~~ 316 (361)
T cd06452 240 TLRGAPLVTLMASFPHVKERVK-RWDEEVEKARWFVAELEK-IEGIKQLGEKPK-NHDLMFFETPSFDEIAKKHKRRGYF 316 (361)
T ss_pred ccCchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhc-CCCeEEECCCCC-CCceEEEEcCCcchhhhhccccchh
Confidence 4444555566666664444433 334445566899999987 679988753322 234444444321 1224
Q ss_pred HHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 306 LLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 306 ~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
+.+.| +||.+. + + +. .+++|++... .+++|++.++++|++
T Consensus 317 ~~~~L~~~gI~~~----~-~------------~~-----~~~~ri~~~g-~~~e~~~~l~~al~~ 358 (361)
T cd06452 317 LYSELKKRGIHGI----K-P------------GL-----TRYFKLSTYG-LTWEQVEYVVDAFKE 358 (361)
T ss_pred HHHHHHHcCceEE----c-C------------CC-----ceEEEEEecC-CCHHHHHHHHHHHHH
Confidence 66666 577742 1 0 11 2689999822 599999999999985
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface. |
| >PRK15080 ethanolamine utilization protein EutJ; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.9e-23 Score=250.17 Aligned_cols=202 Identities=24% Similarity=0.316 Sum_probs=175.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcCccceEEEEEcCCCCHHHHHHHHHHHHHcCCceEEEechhHHHHHHhhhccCcccceEEE
Q psy15216 743 IEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAV 822 (2602)
Q Consensus 743 ~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~~~~Aa~~AGl~~~~li~EPtAAAl~y~~~~~~~~~~vlV 822 (2602)
.+.....|+++++.+++++|.++..++++||++|+..+|+++++|++.||+++..+++||+|++.+|... ..+|
T Consensus 66 i~~a~~~i~~~~~~ae~~~g~~i~~v~~~vp~~~~~~~~~~~~~~~~~aGl~~~~ii~e~~A~a~~~~~~------~~~v 139 (267)
T PRK15080 66 FIGAVTIVRRLKATLEEKLGRELTHAATAIPPGTSEGDPRAIINVVESAGLEVTHVLDEPTAAAAVLGID------NGAV 139 (267)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcCeEEEEeCCCCCchhHHHHHHHHHHcCCceEEEechHHHHHHHhCCC------CcEE
Confidence 4666778999999999999999999999999999999999999999999999999999999999988653 2589
Q ss_pred EEeCCceEEEEEEEEECCEEEEEEEecCCCCcchHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHcccccceEE
Q psy15216 823 YDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKL 902 (2602)
Q Consensus 823 ~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~l~~~~e~~K~~LS~~~~~~~ 902 (2602)
+|+||||+|+++++ ++.+ +.+ ++..+||++||+.|.+++.-. +.++|++|+.++
T Consensus 140 vDIGggtt~i~v~~--~g~~--~~~-~~~~~GG~~it~~Ia~~l~i~--------------~~eAE~lK~~~~------- 193 (267)
T PRK15080 140 VDIGGGTTGISILK--DGKV--VYS-ADEPTGGTHMSLVLAGAYGIS--------------FEEAEQYKRDPK------- 193 (267)
T ss_pred EEeCCCcEEEEEEE--CCeE--EEE-ecccCchHHHHHHHHHHhCCC--------------HHHHHHHHhccC-------
Confidence 99999999999975 3432 233 467999999999998765311 367899998753
Q ss_pred EEEecCCceEEEEeCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccceEEEecCccchHHHHHHHHhhccCcccCcCC
Q psy15216 903 NVKLSDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSID 982 (2602)
Q Consensus 903 ~i~~~~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~a~~~~~~i~~V~LvGG~sr~P~v~~~l~~~f~~~~~~~~~ 982 (2602)
+++++.++++++++++.+.+++.++.. .++.|+|+||+|++|.+++.+++.|+.++..+.|
T Consensus 194 --------------~~~~~~~ii~~~~~~i~~~i~~~l~~~-----~~~~IvLtGG~s~lpgl~e~l~~~lg~~v~~~~~ 254 (267)
T PRK15080 194 --------------HHKEIFPVVKPVVEKMASIVARHIEGQ-----DVEDIYLVGGTCCLPGFEEVFEKQTGLPVHKPQH 254 (267)
T ss_pred --------------CHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCEEEEECCcccchhHHHHHHHHhCCCcccCCC
Confidence 467899999999999999999999864 6789999999999999999999999999999999
Q ss_pred cchHhHHHHHHHh
Q psy15216 983 PDKAVVFGAAIQA 995 (2602)
Q Consensus 983 p~~aVa~GAa~~a 995 (2602)
|+.++|.|||+++
T Consensus 255 P~~~~a~Gaa~~~ 267 (267)
T PRK15080 255 PLFVTPLGIALSC 267 (267)
T ss_pred chHHHHHHHHhhC
Confidence 9999999999874
|
|
| >PLN03026 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.5e-23 Score=266.32 Aligned_cols=311 Identities=14% Similarity=0.119 Sum_probs=229.1
Q ss_pred CCCCCCC-CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcc
Q psy15216 1 MDYSATT-PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAA 79 (2602)
Q Consensus 1 Ld~a~~~-~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~ 79 (2602)
|+.+.++ ++|+.+.+++.+. .....+|.. ...++|+++++++|+++++|++|+|+++++..++.++.
T Consensus 57 l~~n~~p~~~~~~v~~a~~~~-~~~~~Yp~~-----------~~~~lr~~ia~~~~~~~~~I~~t~Ga~~~i~~~~~~~~ 124 (380)
T PLN03026 57 LDANENPYGPPPEVLEALGNM-KFPYVYPDP-----------ESRRLRAALAEDSGLESENILVGCGADELIDLLMRCVL 124 (380)
T ss_pred ccCCCCCCCCCHHHHHHHHhh-HhhccCCCC-----------CHHHHHHHHHHHhCcChhhEEEcCCHHHHHHHHHHHhc
Confidence 3444444 5677788877652 111123322 24579999999999999999999999999999999887
Q ss_pred cccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhc-cCCceEEEEecccCcccccccHHHH
Q psy15216 80 HFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKI-CSDTILVSVMLVNNEIGVIQPILEI 158 (2602)
Q Consensus 80 ~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i-~~~tklv~i~~~~npTG~~~~l~~I 158 (2602)
++||+|++++|.|+.+...++. .|++++.++.++++.+|++++++++ +++++++++++|+||||.++|.+++
T Consensus 125 ----~~gd~Vlv~~P~y~~y~~~~~~---~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~~~v~l~~P~NPTG~~~~~~~l 197 (380)
T PLN03026 125 ----DPGDKIIDCPPTFGMYVFDAAV---NGAEVIKVPRTPDFSLDVPRIVEAVETHKPKLLFLTSPNNPDGSIISDDDL 197 (380)
T ss_pred ----CCCCEEEEcCCChHHHHHHHHH---cCCEEEEeecCCCCCcCHHHHHHHHhccCCcEEEEeCCCCCCCCCCCHHHH
Confidence 7999999999999876655544 4999999998777889999999999 7899999999999999999999999
Q ss_pred HHHHHhcCCEEEEeccccccc---cccc-CCCCCccEEEeccccccCCCC--cEEEEEecCCCCcccceecCCCcccccc
Q psy15216 159 GELCRSKGVIFHCDAAQAVGK---IDIN-IQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLR 232 (2602)
Q Consensus 159 ~~la~~~g~~livD~a~a~g~---~~~d-l~~~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~ 232 (2602)
.++++.. +++|+|++|..-. .... +...+..+++.||+|.||++| +||+++++++++.+.....
T Consensus 198 ~~l~~~~-~~vi~DeaY~~~~~~~~~~~~~~~~~~viv~~SfSK~~glaGlRiGy~~~~~~~i~~l~~~~~--------- 267 (380)
T PLN03026 198 LKILELP-ILVVLDEAYIEFSTQESRMKWVKKYDNLIVLRTFSKRAGLAGLRVGYGAFPLSIIEYLWRAKQ--------- 267 (380)
T ss_pred HHHHhcC-CEEEEECcchhhcCCcchHHHHHhCCCEEEEecchHhhcCccccceeeecCHHHHHHHHHhcC---------
Confidence 9999865 9999999985221 1111 222344588899999999998 8999999877766654331
Q ss_pred ccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEc-ccChhHHHHHh-
Q psy15216 233 SGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN-FIEGESLLMAI- 310 (2602)
Q Consensus 233 ~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~L- 310 (2602)
.++.+.+...++.++|+. ..++++.++++.+.++++.+.|.+ ++++.+. ++. .+++.+.++ ..+..++...|
T Consensus 268 ~~~~~~~~q~aa~~aL~~-~~~~~~~~~~~~~~r~~l~~~L~~-~~~~~~~-p~~---~~f~~~~~~~~~~~~~~~~~l~ 341 (380)
T PLN03026 268 PYNVSVAAEVAACAALSN-PKYLEDVKNALVEERERLFGLLKE-VPFLEPY-PSD---ANFILCRVTSGRDAKKLKEDLA 341 (380)
T ss_pred CCCCCHHHHHHHHHHhhC-HHHHHHHHHHHHHHHHHHHHHHHH-CCCCeEC-CCC---CeEEEEECCCCCCHHHHHHHHH
Confidence 234555566666667752 345677788888889999999977 5555443 211 223333343 23566777666
Q ss_pred -CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 311 -KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 311 -~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
+||.++++.... ..+++|||++ +.+++++++++|++
T Consensus 342 ~~gI~v~~~~~~~-------------------~~~~lRis~~---~~~~~~~l~~al~~ 378 (380)
T PLN03026 342 KMGVMVRHYNSKE-------------------LKGYIRVSVG---KPEHTDALMEALKQ 378 (380)
T ss_pred HCCeEEEECCCCC-------------------CCCEEEEecC---CHHHHHHHHHHHHH
Confidence 799998654311 1378999998 78999999999984
|
|
| >COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.9e-23 Score=238.97 Aligned_cols=318 Identities=16% Similarity=0.203 Sum_probs=248.3
Q ss_pred CCCHHHHHHHHHHHhhh-cCCCCCCCcchhhhHHHHHHHHHHHHHHHhCC--CCCcEEEeCCHHHHHHHHHHhccccccc
Q psy15216 8 PIDPRVVDKMIPYLRVQ-FGNPASRNHIYGWTAEKAIEKARNEVAQLIYA--DPREIIWTSGATESNNLAIKGAAHFYKK 84 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~-~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~--~~~~Iv~t~g~T~al~~~~~~l~~~~~~ 84 (2602)
+.||.+++|+++.+.+. ++|| +....+.+.+.++.++.++. +++.|++++|.--++..+++++. +
T Consensus 38 ~~pp~i~~Al~~rvdhGvfGY~--------~~~~~~~~ai~~w~~~r~~~~i~~e~i~~~p~VVpgi~~~I~~~T----~ 105 (388)
T COG1168 38 PTPPEIIEALRERVDHGVFGYP--------YGSDELYAAIAHWFKQRHQWEIKPEWIVFVPGVVPGISLAIRALT----K 105 (388)
T ss_pred CCCHHHHHHHHHHHhcCCCCCC--------CCCHHHHHHHHHHHHHhcCCCCCcceEEEcCcchHhHHHHHHHhC----c
Confidence 67899999999999863 4444 33456788999999998876 66789999999999999999999 8
Q ss_pred CCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccC-CC--CccChHHHHhhccC-CceEEEEecccCccccccc---HHH
Q psy15216 85 RGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK-NN--GLITLSQLEEKICS-DTILVSVMLVNNEIGVIQP---ILE 157 (2602)
Q Consensus 85 ~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~-~~--~~ld~e~l~~~i~~-~tklv~i~~~~npTG~~~~---l~~ 157 (2602)
+||.|++..|.|+.+...+... |.++...|+. .+ +.+|.++|++++.+ +++++++||||||||.++. +.+
T Consensus 106 ~gd~Vvi~tPvY~PF~~~i~~n---~R~~i~~pL~~~~~~y~iD~~~LE~~~~~~~vkl~iLCnPHNP~Grvwt~eeL~~ 182 (388)
T COG1168 106 PGDGVVIQTPVYPPFYNAIKLN---GRKVIENPLVEDDGRYEIDFDALEKAFVDERVKLFILCNPHNPTGRVWTKEELRK 182 (388)
T ss_pred CCCeeEecCCCchHHHHHHhhc---CcEEEeccccccCCcEEecHHHHHHHHhcCCccEEEEeCCCCCCCccccHHHHHH
Confidence 9999999999999998888765 8888888875 34 45799999998864 5799999999999999998 667
Q ss_pred HHHHHHhcCCEEEEeccccc----cccccc---CCCC--CccEEEeccccccCCCC--cEEEEEecC-CCCcccceecCC
Q psy15216 158 IGELCRSKGVIFHCDAAQAV----GKIDIN---IQNY--KVDLMSFSAHKIYGPKG--IGALYIRRN-PRTRIEAQIHGG 225 (2602)
Q Consensus 158 I~~la~~~g~~livD~a~a~----g~~~~d---l~~~--~~D~~~~S~~K~~Gp~G--~G~l~~~~~-~~~~l~~~~~g~ 225 (2602)
|.++|++||+.||+|+.|+. |...+. +... +..+.+.|.+|.|..+| +++++.+++ +..+....+
T Consensus 183 i~elc~kh~v~VISDEIHaDlv~~g~~h~~~a~ls~~~a~~~it~~saSKtFNlaGL~~a~~Ii~n~~lr~~~~~~l--- 259 (388)
T COG1168 183 IAELCLRHGVRVISDEIHADLVLGGHKHIPFASLSERFADNSITLTSASKTFNLAGLKCAYIIISNRELRAKFLKRL--- 259 (388)
T ss_pred HHHHHHHcCCEEEeecccccccccCCCccchhhcChhhhcceEEEeeccccccchhhhheeEEecCHHHHHHHHHHH---
Confidence 88999999999999999974 222222 2222 23477778999998888 677766543 323332222
Q ss_pred CccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc--cCh
Q psy15216 226 GHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF--IEG 303 (2602)
Q Consensus 226 ~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~--~~~ 303 (2602)
.....+.+|.+++.|..+|.+....|+++..+..+.+++++.+.+.+.+|++++..|+..+ ...+.+.. .+.
T Consensus 260 ---~~~~~~~~n~lg~~A~~aAY~~G~~WLd~L~~yl~~N~~~~~~~l~~~~P~v~v~~p~gTY---L~WLD~r~l~l~d 333 (388)
T COG1168 260 ---KRNGLHGPSALGIIATEAAYNQGEPWLDELLEYLKDNRDYVADFLNKHLPGVKVTEPQGTY---LAWLDCRELGLDD 333 (388)
T ss_pred ---HHhcCCCCchHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEecCCCce---eeeeeccccCCCh
Confidence 1123567999999999999998889999999999999999999999989999999776542 22333332 343
Q ss_pred hHHHHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 304 ESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 304 ~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
.++...+ .++.+.+|..|+.. ..|++|+.++ ++.+-++..+++|+.
T Consensus 334 ~~l~~~ll~~akVal~~G~~FG~~-----------------g~gf~RlN~a--cpr~~L~eal~ri~~ 382 (388)
T COG1168 334 SELAEFLLEEAKVALSPGSTFGEE-----------------GSGFVRLNFA--CPRAILEEALERLKR 382 (388)
T ss_pred HHHHHHHHHhhcEeccCCCccCcC-----------------CCceEEEecC--CCHHHHHHHHHHHHH
Confidence 3444444 79999999988754 2489999998 588888888888874
|
|
| >PRK15080 ethanolamine utilization protein EutJ; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.6e-23 Score=248.81 Aligned_cols=202 Identities=24% Similarity=0.310 Sum_probs=175.1
Q ss_pred HHHHHHHHHHHHHHHHHhhccccceEEEeeCCCCCHHHHHHHHHHHHHcCCceeEeechhHHHHHHhhhccCCCCceEEE
Q psy15216 2139 IEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAV 2218 (2602)
Q Consensus 2139 ~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~l~~Aa~~AGl~~~~li~EP~AAAl~y~~~~~~~~~~vlV 2218 (2602)
.+.....|+++++.++.+++.++..++++||++|+..+|+++++|++.||+++..+++||.|++.+|... ..+|
T Consensus 66 i~~a~~~i~~~~~~ae~~~g~~i~~v~~~vp~~~~~~~~~~~~~~~~~aGl~~~~ii~e~~A~a~~~~~~------~~~v 139 (267)
T PRK15080 66 FIGAVTIVRRLKATLEEKLGRELTHAATAIPPGTSEGDPRAIINVVESAGLEVTHVLDEPTAAAAVLGID------NGAV 139 (267)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcCeEEEEeCCCCCchhHHHHHHHHHHcCCceEEEechHHHHHHHhCCC------CcEE
Confidence 4667778999999999999988999999999999999999999999999999999999999999987543 1589
Q ss_pred EEeCCceEEEEEEEEeCCEEEEEEEecCCCCchhHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhcccceEEE
Q psy15216 2219 YDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKL 2298 (2602)
Q Consensus 2219 ~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~~ 2298 (2602)
+|+||||||+++++- +. ++.+ ++..+||++||+.|.+++.-. +.++|++|+.++
T Consensus 140 vDIGggtt~i~v~~~--g~--~~~~-~~~~~GG~~it~~Ia~~l~i~--------------~~eAE~lK~~~~------- 193 (267)
T PRK15080 140 VDIGGGTTGISILKD--GK--VVYS-ADEPTGGTHMSLVLAGAYGIS--------------FEEAEQYKRDPK------- 193 (267)
T ss_pred EEeCCCcEEEEEEEC--Ce--EEEE-ecccCchHHHHHHHHHHhCCC--------------HHHHHHHHhccC-------
Confidence 999999999999753 33 2333 468999999999998766321 367888887653
Q ss_pred EEEecCCceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccceEEEEeCccchHHHHHHHHhhcCCcccCCCC
Q psy15216 2299 NVKLSDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSID 2378 (2602)
Q Consensus 2299 ~i~~~~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~~~~~~ 2378 (2602)
++++++++++++++++.+.+++.++.. +++.|+|+||+|++|.+++.+++.|+.++..+.+
T Consensus 194 --------------~~~~~~~ii~~~~~~i~~~i~~~l~~~-----~~~~IvLtGG~s~lpgl~e~l~~~lg~~v~~~~~ 254 (267)
T PRK15080 194 --------------HHKEIFPVVKPVVEKMASIVARHIEGQ-----DVEDIYLVGGTCCLPGFEEVFEKQTGLPVHKPQH 254 (267)
T ss_pred --------------CHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCEEEEECCcccchhHHHHHHHHhCCCcccCCC
Confidence 357899999999999999999999864 5789999999999999999999999999999999
Q ss_pred ccchhhhHHHHHh
Q psy15216 2379 PDKAVVFGAAIQA 2391 (2602)
Q Consensus 2379 p~~aVa~GAa~~a 2391 (2602)
|+.++|.|||+++
T Consensus 255 P~~~~a~Gaa~~~ 267 (267)
T PRK15080 255 PLFVTPLGIALSC 267 (267)
T ss_pred chHHHHHHHHhhC
Confidence 9999999999874
|
|
| >PRK14807 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-22 Score=260.45 Aligned_cols=313 Identities=19% Similarity=0.167 Sum_probs=227.7
Q ss_pred CCCCCCC-CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcc
Q psy15216 1 MDYSATT-PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAA 79 (2602)
Q Consensus 1 Ld~a~~~-~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~ 79 (2602)
|+.+.+. ++|+.+++++.+++.....+ .|.. ....++|+.+|+++++++++|++|+|+++++++++.++.
T Consensus 27 l~~~~~~~~~p~~~~~a~~~~~~~~~~~----~y~~-----~~~~~lr~~ia~~~~~~~~~i~it~G~~~~l~~~~~~l~ 97 (351)
T PRK14807 27 MDANETPFELPEEVIKNIQEIVKSSQVN----IYPD-----PTAEKLREELARYCSVVPTNIFVGNGSDEIIHLIMLAFI 97 (351)
T ss_pred ccCCCCCCCCCHHHHHHHHHHhhcCccc----CCCC-----ccHHHHHHHHHHHhCCCcccEEEecCHHHHHHHHHHHhc
Confidence 3444555 68899999998877531100 1110 124788999999999999999999999999999999887
Q ss_pred cccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccC-CceEEEEecccCcccccccHHHH
Q psy15216 80 HFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS-DTILVSVMLVNNEIGVIQPILEI 158 (2602)
Q Consensus 80 ~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~-~tklv~i~~~~npTG~~~~l~~I 158 (2602)
++||+|++++|.|+.+...++. .|++++.++.++++.+|++++++++++ +++++++++|+||||.++|.+++
T Consensus 98 ----~~gd~Vlv~~p~y~~~~~~~~~---~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~k~v~l~~p~NPtG~~~~~~~l 170 (351)
T PRK14807 98 ----NKGDVVIYPHPSFAMYSVYSKI---AGAVEIPVKLKEDYTYDVGSFIKVIEKYQPKLVFLCNPNNPTGSVIEREDI 170 (351)
T ss_pred ----CCCCEEEEeCCChHHHHHHHHH---cCCeEEEeecCCCCCCCHHHHHHHhhccCCCEEEEeCCCCCCCCCCCHHHH
Confidence 8999999999999876555544 499999999887788999999999975 89999999999999999999999
Q ss_pred HHHHHhcCCEEEEeccccccc--cccc-CCCCCccEEEeccccccCCCC--cEEEEEecCCCCcccceecCCCccccccc
Q psy15216 159 GELCRSKGVIFHCDAAQAVGK--IDIN-IQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRS 233 (2602)
Q Consensus 159 ~~la~~~g~~livD~a~a~g~--~~~d-l~~~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~ 233 (2602)
.+++++++.++|+|++|..-. .... +......+++.|++|.+|++| +||++.++++++.+..... .
T Consensus 171 ~~l~~~~~~~~ivDe~y~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRiG~~v~~~~~~~~~~~~~~---------~ 241 (351)
T PRK14807 171 IKIIEKSRGIVVVDEAYFEFYGNTIVDVINEFENLIVLRTLSKAFGLAGLRVGYAVANENILKYLNLVKS---------P 241 (351)
T ss_pred HHHHHhCCCEEEEeCcchhhcccchHHHhhhCCCEEEEecchHhcccchhceeeeecCHHHHHHHHHccC---------C
Confidence 999999888999999985211 1111 112234588889999999888 8999998877776653321 1
Q ss_pred cCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcccChhHHHHHh--C
Q psy15216 234 GTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI--K 311 (2602)
Q Consensus 234 gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~ 311 (2602)
+..+.....++..+++. .++++..++..+.++++.+.|.+ .+|+.+..+ .. ....+.+ .+...+.+.| +
T Consensus 242 ~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~r~~l~~~l~~-~~g~~~~~~-~~---~~~~i~~--~~~~~~~~~l~~~ 312 (351)
T PRK14807 242 YNINSLSQVIALKVLRT--GVLKERVNYILNERERLIKELSK-IPGIKVYPS-KT---NFILVKF--KDADYVYQGLLER 312 (351)
T ss_pred CCcCHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHHHHHHh-CCCcEECcC-Cc---cEEEEEc--CCHHHHHHHHHHC
Confidence 23444455555455542 34566667777888888888876 678776422 21 2222333 3455666555 7
Q ss_pred CeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 312 DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 312 gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
||.+++..... + ..+++||+++ +.+++++++++|++
T Consensus 313 gV~v~~~~~~~-------------~-----~~~~iRis~~---~~~~~~~l~~~l~~ 348 (351)
T PRK14807 313 GILVRDFSKVE-------------G-----LEGALRITVS---SCEANDYLINGLKE 348 (351)
T ss_pred CEEEEECCCCC-------------C-----CCCeEEEEcC---CHHHHHHHHHHHHH
Confidence 99987532110 1 1378999998 78999999999986
|
|
| >PRK09105 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.4e-23 Score=262.11 Aligned_cols=308 Identities=12% Similarity=0.104 Sum_probs=228.4
Q ss_pred CCCCCCC-CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcc
Q psy15216 1 MDYSATT-PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAA 79 (2602)
Q Consensus 1 Ld~a~~~-~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~ 79 (2602)
||.+.+. ++|+.+++++.+.+.....+|.. ...++|+.+++++|+++++|++|+|+++++.+++.++.
T Consensus 48 l~~~~~~~~~~~~~~~a~~~~~~~~~~Y~~~-----------~~~~Lr~aia~~~~v~~e~I~it~Gs~~ai~~~~~~l~ 116 (370)
T PRK09105 48 LNANECPLGPSPAARDAAARSAALSGRYDLE-----------LEDDLRTLFAAQEGLPADHVMAYAGSSEPLNYAVLAFT 116 (370)
T ss_pred ecCCCCCCCCCHHHHHHHHHHHHHhcCCCCc-----------hHHHHHHHHHHHhCcChhhEEEcCChHHHHHHHHHHHc
Confidence 4556655 67889999998876542222221 25778999999999999999999999999999999987
Q ss_pred cccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHH
Q psy15216 80 HFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIG 159 (2602)
Q Consensus 80 ~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~ 159 (2602)
++||.|++++|+|+.+...++.. |++++.++.++++.+|++.+++. .++++++++++||||||.++|.++|.
T Consensus 117 ----~~gd~Vli~~P~y~~~~~~~~~~---g~~~~~v~~~~~~~~d~~~l~~~-~~~~~~v~l~nP~NPTG~~~~~~~l~ 188 (370)
T PRK09105 117 ----SPTAGLVTADPTYEAGWRAADAQ---GAPVAKVPLRADGAHDVKAMLAA-DPNAGLIYICNPNNPTGTVTPRADIE 188 (370)
T ss_pred ----CCCCEEEEeCCChHHHHHHHHHc---CCeEEEecCCCCCCCCHHHHHhc-CCCCCEEEEeCCCCCCCcCcCHHHHH
Confidence 79999999999999987766655 99999999887788999999887 57799999999999999999999988
Q ss_pred HHHHh--cCCEEEEecccccc-ccc--ccCCCCCcc-EEEeccccccCCCC--cEEEEEecCCCCcccceecCCCccccc
Q psy15216 160 ELCRS--KGVIFHCDAAQAVG-KID--INIQNYKVD-LMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGL 231 (2602)
Q Consensus 160 ~la~~--~g~~livD~a~a~g-~~~--~dl~~~~~D-~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~ 231 (2602)
++++. +++++|+|++|..- ..+ .++...+.+ +++.|++|.||++| +||+++++++++.+.+..
T Consensus 189 ~l~~~~~~~~~lIvDEaY~~f~~~~s~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~v~~~~~i~~l~~~~--------- 259 (370)
T PRK09105 189 WLLANKPAGSVLLVDEAYIHFSDAPSVVDLVAQRKDLIVLRTFSKLYGMAGMRLGLAAARPDLLAKLARFG--------- 259 (370)
T ss_pred HHHHhCCCCcEEEEECchHHhccCcchHHHHhhCCCEEEEecccHhhcCCccceeeeecCHHHHHHHHhcC---------
Confidence 88753 48999999998421 111 222222334 66679999999999 999999988777665431
Q ss_pred cccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcccChhHHHHHh-
Q psy15216 232 RSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI- 310 (2602)
Q Consensus 232 ~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L- 310 (2602)
..+++.....++.++|.. ..+.++.++++.++++++.+.|.+ .++.+..+.. .++.+.++ .+..++.+.|
T Consensus 260 -~~~~~~~~~~aa~~~L~~-~~~~~~~~~~~~~~r~~l~~~L~~--~g~~~~~~~~----~f~~~~~~-~~~~~l~~~L~ 330 (370)
T PRK09105 260 -HNPLPVPAAAAGLASLRD-PKLVPQRRAENAAVREDTIAWLKK--KGYKCTPSQA----NCFMVDVK-RPAKAVADAMA 330 (370)
T ss_pred -CCCcCHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHHHHH--CCCCcCCCCC----cEEEEeCC-CCHHHHHHHHH
Confidence 123555555555556652 345677788889999999999977 3666553322 22222222 3556677766
Q ss_pred -CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 311 -KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 311 -~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
+||.++ ..+.. .++++||+++ +++++++++++|++
T Consensus 331 ~~gI~v~--~~~~~------------------~~~~~Ris~~---~~~~~~~l~~al~~ 366 (370)
T PRK09105 331 KQGVFIG--RSWPI------------------WPNWVRVTVG---SEEEMAAFRSAFAK 366 (370)
T ss_pred HCCcEEe--cCCCC------------------CCCeEEEEcC---CHHHHHHHHHHHHH
Confidence 788883 22211 1379999998 78999999999985
|
|
| >TIGR01141 hisC histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.4e-23 Score=263.68 Aligned_cols=305 Identities=18% Similarity=0.202 Sum_probs=231.0
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCC
Q psy15216 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK 87 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd 87 (2602)
++|+.+++++.++......++.. ..+++|+.+|+++|+++++|++++|++++++.++.++. ++||
T Consensus 32 ~~~~~~~~a~~~~~~~~~~y~~~-----------~~~~lr~~ia~~~~~~~~~i~~~~G~~~~l~~~~~~l~----~~gd 96 (346)
T TIGR01141 32 GPPPKAKEALRAEADKLHRYPDP-----------DPAELKQALADYYGVDPEQILLGNGSDEIIELLIRAFL----EPGD 96 (346)
T ss_pred CCCHHHHHHHHHhHHHhhcCCCC-----------CHHHHHHHHHHHhCcChHHEEEcCCHHHHHHHHHHHhc----CCCC
Confidence 67889999999886543333332 12679999999999988999999999999999998887 7999
Q ss_pred EEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHhc--
Q psy15216 88 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSK-- 165 (2602)
Q Consensus 88 ~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~~-- 165 (2602)
+|++++|.|+.+...+. ..|++++.++.++++.+|++++++++++++++|++++|+||||.++|++++.++|+.+
T Consensus 97 ~v~~~~p~y~~~~~~~~---~~g~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NptG~~~~~~~~~~l~~~~~~ 173 (346)
T TIGR01141 97 AVLVPPPTYSMYEISAK---IHGAEVVKVPLDEDGQLDLEDILVAIDDKPKLVFLCSPNNPTGNLLSRSDIEAVLERTPE 173 (346)
T ss_pred EEEEcCCCHHHHHHHHH---HcCCeEEEeccCCCCCCCHHHHHHhcCCCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCC
Confidence 99999999886654444 4599999999988888999999999989999999999999999999999999999876
Q ss_pred CCEEEEecccccccc---cccC-CCCCccEEEeccccccCCCC--cEEEEEecCCCCcccceecCCCccccccccCcchh
Q psy15216 166 GVIFHCDAAQAVGKI---DINI-QNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATH 239 (2602)
Q Consensus 166 g~~livD~a~a~g~~---~~dl-~~~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~ 239 (2602)
++++++|++|+.-.. +.+. ...+..+++.|+||++|++| +||+++++++++.+.+... ..+.+.+
T Consensus 174 ~~~ii~D~~y~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~---------~~~~~~~ 244 (346)
T TIGR01141 174 DALVVVDEAYGEFSGEPSTLPLLAEYPNLIVLRTLSKAFGLAGLRIGYAIANAEIIDALNKVRA---------PFNLSRL 244 (346)
T ss_pred CcEEEEECchhhhcCCccHHHHHhhCCCEEEEehhhHhhhchhhhceeeecCHHHHHHHHhccC---------CCCCCHH
Confidence 999999999862111 1111 11233577889999988777 7999999887777665431 1233444
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcccChhHHHHHh--CCeEEcc
Q psy15216 240 QIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDIAVSS 317 (2602)
Q Consensus 240 ~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~v~~ 317 (2602)
...++..+++.. .++++..++++++++++++.|.+ .+++++.++ . ..++.+.++. +..++.+.| +||.+++
T Consensus 245 ~~~~~~~~l~~~-~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~-~---g~~~~~~~~~-~~~~~~~~L~~~gI~v~~ 317 (346)
T TIGR01141 245 AQAAAIAALRDD-DFIEKTVEEINAERERLYDGLKK-LPGLEVYPS-D---ANFVLIRFPR-DADALFEALLEKGIIVRD 317 (346)
T ss_pred HHHHHHHHhCCH-HHHHHHHHHHHHHHHHHHHHHHh-cCCCEECCC-c---CCEEEEecCC-CHHHHHHHHHHCCeEEEe
Confidence 555454555432 25678888889999999999987 578775532 1 2334444444 566777766 7999998
Q ss_pred cccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHH
Q psy15216 318 GSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK 367 (2602)
Q Consensus 318 g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~ 367 (2602)
|..+.. . .+++|+|++ +++|+++++++|+
T Consensus 318 g~~f~~-------------~-----~~~iRls~~---~~~~i~~~~~~l~ 346 (346)
T TIGR01141 318 LNSYPG-------------L-----PNCLRITVG---TREENDRFLAALR 346 (346)
T ss_pred CCCcCC-------------C-----CCeEEEecC---CHHHHHHHHHHhC
Confidence 875521 0 378999987 8999999999874
|
Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme. |
| >cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-22 Score=260.54 Aligned_cols=326 Identities=16% Similarity=0.156 Sum_probs=233.9
Q ss_pred CCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCC
Q psy15216 1403 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRG 1482 (2602)
Q Consensus 1403 ~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~g 1482 (2602)
.+..+.+++++.++-+ .+++|++-.+..+......+.++++.+++++|+ +++++|+|+|+++..++.++. ++|
T Consensus 11 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~--~~i~~~~g~t~al~~~l~~~~----~~g 83 (361)
T cd06452 11 GRLTPEARKALIEWGD-GYSVCDFCRGRLDEIEKPPIKDFHHDLAEFLGM--DEARVTPGAREGKFAVMHSLC----EKG 83 (361)
T ss_pred CCCCHHHHHHHHHHhc-ccCCccccccccccccCchHHHHHHHHHHHcCC--ceEEEeCCHHHHHHHHHHHhc----CCC
Confidence 4667778888877773 345654322223333335688999999999998 689999999999999999986 899
Q ss_pred CEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCC--CcChhHHHhhcc-------CCceEEEEeccccccccccChHH
Q psy15216 1483 KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNG--LITLSQLEEKIC-------SDTILVSVMLVNNEIGVIQPILE 1553 (2602)
Q Consensus 1483 d~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~--~id~d~l~~~i~-------~~t~lv~l~~~~n~tG~~~~l~~ 1553 (2602)
|+|+++.++|.+....+ ...|++++.++.++++ .+|+++++++++ +++++|+++||+||||.+.|+++
T Consensus 84 d~Vl~~~~~~~~~~~~~---~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~tG~~~~~~~ 160 (361)
T cd06452 84 DWVVVDGLAHYTSYVAA---ERAGLNVREVPNTGHPEYHITPEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLHDAKK 160 (361)
T ss_pred CEEEEcCCcchHHHHHH---HhcCCEEEEEecCCCCCcccCHHHHHHHHHHHhhccCCCceEEEEECCCCCCeeeccHHH
Confidence 99999999998876543 4459999999987654 899999999986 37899999999999999999999
Q ss_pred HHHHhhhcCCEEEEecccccCcccccCCCCCccEEEEcccccc-CCCceEEEEEecCCCCccccccccCCc-cccCCCCC
Q psy15216 1554 IGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIY-GPKGIGALYIRRNPRTRIEAQIHGGGH-EYGLRSGT 1631 (2602)
Q Consensus 1554 I~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K~~-gp~G~G~l~~~~~~~~~l~~~~~g~~~-~~~~~~gt 1631 (2602)
|.++|++||+++++|++|+.|..+++..+++.|++++|+||++ +|.++|++++++++++++......+.. ...+..++
T Consensus 161 i~~~~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~~~~~~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 240 (361)
T cd06452 161 IAKVCHEYGVPLLLNGAYTVGRMPVSGKELGADFIVGSGHKSMAASAPIGVLATTEEWADIVFRTSQMFKIKEVELLGCT 240 (361)
T ss_pred HHHHHHHcCCeEEEECCcccCCcCCCHHHcCCCEEEecCCccccCCCCeEEEEECHHHHHHHhccccccccceeeeeccc
Confidence 9999999999999999999998888777788999999999954 456699999998776665432211111 01122334
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecC---------CcHHH
Q psy15216 1632 LATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI---------EGESL 1702 (2602)
Q Consensus 1632 ~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~---------~~~~~ 1702 (2602)
.....++++.++++...+.++. ..+..+.++++++.|.+ ++++.++.+... .+++..+..+.. ...++
T Consensus 241 ~~~~~~~~~~~al~~~~~~~~~-~~~~~~~~~~l~~~L~~-l~g~~v~~~~~~-~~n~~~~~~~~~~~~~~~~~~~~~~~ 317 (361)
T cd06452 241 LRGAPLVTLMASFPHVKERVKR-WDEEVEKARWFVAELEK-IEGIKQLGEKPK-NHDLMFFETPSFDEIAKKHKRRGYFL 317 (361)
T ss_pred cCchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhc-CCCeEEECCCCC-CCceEEEEcCCcchhhhhccccchhH
Confidence 4445555565666644443333 33444566899999987 679988753222 234444443311 11245
Q ss_pred HHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1703 LMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1703 ~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
...| +||.+. .... .+++|++... .|++|++.++++|++
T Consensus 318 ~~~L~~~gI~~~---~~~~-------------------~~~~ri~~~g-~~~e~~~~l~~al~~ 358 (361)
T cd06452 318 YSELKKRGIHGI---KPGL-------------------TRYFKLSTYG-LTWEQVEYVVDAFKE 358 (361)
T ss_pred HHHHHHcCceEE---cCCC-------------------ceEEEEEecC-CCHHHHHHHHHHHHH
Confidence 5555 677631 1011 2679999843 599999999999985
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface. |
| >TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.7e-22 Score=259.80 Aligned_cols=322 Identities=17% Similarity=0.196 Sum_probs=234.6
Q ss_pred CCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhh--ccCC
Q psy15216 1405 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFY--KKRG 1482 (2602)
Q Consensus 1405 ~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~--~~~g 1482 (2602)
+.+.+.+++..+.....++++. +. ......+++++++++++|++++++++++|+++++..++.++.... .++|
T Consensus 32 ~~~~~~~a~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~la~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g 106 (373)
T TIGR03812 32 PHPIAVKAYDMFIETNLGDPGL--FP---GTKKIEEEVVGSLGNLLHLPDAYGYIVSGGTEANIQAVRAAKNLAREEKRT 106 (373)
T ss_pred chHHHHHHHHHHhhcCCCCccc--Cc---cHHHHHHHHHHHHHHHhCCCCCCeEEeccHHHHHHHHHHHHHHHHhccCCC
Confidence 4445577777776654455542 21 234567899999999999988888999999999988877664211 1467
Q ss_pred CEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccCCceEEEEeccccccccccChHHHHHHhhhcC
Q psy15216 1483 KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKG 1562 (2602)
Q Consensus 1483 d~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~~ia~~~g 1562 (2602)
|+|++++++|+++...++. .|++++.++.++++.+|++++++++++++..+++.+++||||.+.|+++|.++|+++|
T Consensus 107 ~~vl~~~~~h~~~~~~~~~---~G~~~~~v~~~~~~~~d~~~l~~~l~~~~~~vv~~~~~~~tG~~~~~~~i~~l~~~~~ 183 (373)
T TIGR03812 107 PNIIVPESAHFSFEKAAEM---LGLELRYAPLDEDYTVDVKDVEDLIDDNTIGIVGIAGTTELGQIDDIEELSKIALENG 183 (373)
T ss_pred cEEEECCcchHHHHHHHHH---cCCeEEEEeeCCCCCcCHHHHHHHHhhCcEEEEEECCCCCCCccCCHHHHHHHHHHcC
Confidence 9999999999987665544 4999999998888889999999999988866666668999999999999999999999
Q ss_pred CEEEEecccccCcc----------cccCCCCCccEEEEccccc-cCCCceEEEE-EecCCCCcccc--ccccCCccccCC
Q psy15216 1563 VIFHCDAAQAVGKI----------DINIQNYKVDLMSFSAHKI-YGPKGIGALY-IRRNPRTRIEA--QIHGGGHEYGLR 1628 (2602)
Q Consensus 1563 i~vivD~a~~~g~~----------~~~l~~~~~D~~v~S~~K~-~gp~G~G~l~-~~~~~~~~l~~--~~~g~~~~~~~~ 1628 (2602)
+++++|++|+.+.. .+++...++|++++|+||+ ++|.++|+++ .+++.++.+.. .+.... .....
T Consensus 184 ~~livD~a~~~~~~~~~~~~~~~~~~d~~~~~~d~~~~s~~K~~~~~~~~G~~~~~~~~~~~~l~~~~~~~~~~-~~~~~ 262 (373)
T TIGR03812 184 IYLHVDAAFGGFVIPFLKKGYNPPPFDFSLPGVQSITIDPHKMGLSPIPAGGILFRSKSYLKYLSVDAPYLTVK-KQATI 262 (373)
T ss_pred CeEEEEcCchhHHHHHHhcCCCCCCccccCCCCCEEEECccccCCCcCCceEEEEeCHHHHhhhcccCcccCCC-CCcce
Confidence 99999999975543 2344445789999999995 4565566555 45555554421 111111 11122
Q ss_pred CCCcchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecCCcHHHHHhc-
Q psy15216 1629 SGTLATHQIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI- 1706 (2602)
Q Consensus 1629 ~gt~~~~~~~al~~aL~~~-~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~L- 1706 (2602)
.||++...+.++.++++.+ ..++++..++..++++++++.|++ + ++....++ ..++..+.++ +..++...|
T Consensus 263 ~gt~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~---~~~~v~~~~~--~~~~v~~~L~ 335 (373)
T TIGR03812 263 TGTRSGASAAATYAVIKYLGREGYRKIVAECMENTRYLVEELKK-I-GFEPVIEP---VLNIVAFEVD--DPEEVRKKLR 335 (373)
T ss_pred EeechhHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHh-C-CCeEEcCC---CceEEEEEeC--CHHHHHHHHH
Confidence 4688888888888999854 567888999999999999999988 4 44322221 1233334433 345666666
Q ss_pred -CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1707 -KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1707 -~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
+||.++... . .+++|+++++++|.+|+++++++|++
T Consensus 336 ~~gi~v~~~~---~-------------------~~~iRis~~~~~t~edid~l~~~L~~ 372 (373)
T TIGR03812 336 DRGWYVSVTR---C-------------------PKALRIVVMPHVTREHIEEFLEDLKE 372 (373)
T ss_pred HCCceeccCC---C-------------------CCEEEEEEECCCCHHHHHHHHHHHhh
Confidence 688876431 1 26899999999999999999999975
|
Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions. |
| >PRK01533 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.6e-23 Score=263.46 Aligned_cols=303 Identities=16% Similarity=0.136 Sum_probs=226.9
Q ss_pred CCCCCC-CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhccc
Q psy15216 2 DYSATT-PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAH 80 (2602)
Q Consensus 2 d~a~~~-~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~ 80 (2602)
+.+.+. ++|+.+++++.+.+.....+|.. ...++|+.+++++|+++++|++|+|+++++.+++.++.
T Consensus 35 ~~nen~~~~~~~v~~a~~~~~~~~~~Yp~~-----------g~~~Lr~aia~~~~~~~~~I~vt~Gs~e~i~~~~~~l~- 102 (366)
T PRK01533 35 ASNENPFGCSPRVLDELQKSWLDHALYPDG-----------GATTLRQTIANKLHVKMEQVLCGSGLDEVIQIISRAVL- 102 (366)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCcCCCC-----------CHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHhc-
Confidence 334444 67889999998876554344433 24678999999999999999999999999999999987
Q ss_pred ccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHH
Q psy15216 81 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGE 160 (2602)
Q Consensus 81 ~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~ 160 (2602)
++||.|++++|.|+.+...+... |++++.++.+ ++.+|+++++++++++++++++++||||||.+++.+++.+
T Consensus 103 ---~~gd~vlv~~P~y~~~~~~~~~~---g~~v~~v~~~-~~~~d~~~l~~~~~~~~~~v~i~~P~NPTG~~~~~~~l~~ 175 (366)
T PRK01533 103 ---KAGDNIVTAGATFPQYRHHAIIE---GCEVKEVALN-NGVYDLDEISSVVDNDTKIVWICNPNNPTGTYVNDRKLTQ 175 (366)
T ss_pred ---CCCCEEEEcCCcHHHHHHHHHHc---CCEEEEeecC-CCCcCHHHHHHHhCcCCcEEEEeCCCCCCCCCcCHHHHHH
Confidence 89999999999999988777655 9999999985 4569999999999999999999999999999999777666
Q ss_pred HHH---hcCCEEEEeccccccc------cccc-CCCCCccEEEeccccccCCCC--cEEEEEecCCCCcccceecCCCcc
Q psy15216 161 LCR---SKGVIFHCDAAQAVGK------IDIN-IQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHE 228 (2602)
Q Consensus 161 la~---~~g~~livD~a~a~g~------~~~d-l~~~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g~~~~ 228 (2602)
+++ +++ ++|+|+++..-. ..+. +...+..+++.|++|.||++| +||+++++++++.+....
T Consensus 176 l~~~~~~~~-~~iiDe~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiG~~i~~~~~~~~l~~~~------ 248 (366)
T PRK01533 176 FIEGISENT-LIVIDEAYYEYVTAKDFPETLPLLEKHKNILVLRTFSKAYGLASFRVGYAVGHEELIEKLNVVR------ 248 (366)
T ss_pred HHHhCCCCC-EEEEEccHHHhhccccCcchhHHhccCCCEEEEeCchHHhcChHHHHhHHhCCHHHHHHHHHhc------
Confidence 654 444 678899975211 0111 112234588889999999888 899999888777765432
Q ss_pred ccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcccChhHHHH
Q psy15216 229 YGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLM 308 (2602)
Q Consensus 229 ~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (2602)
..++.+.++..++.++|+. ..+.++..+...+.++++.+.+.. .|+.+..+.. ++ ++++..+..++..
T Consensus 249 ---~~~~~~~~~q~aa~~~l~~-~~~~~~~~~~~~~~r~~~~~~l~~--~g~~~~~~~~----nf--~~~~~~~~~~~~~ 316 (366)
T PRK01533 249 ---LPFNVSSLAQKAATIAFGD-DEFIEEIVRVNTEGLRQYESFCKE--NEIPFYQSQT----NF--IFLPVENGGEIYE 316 (366)
T ss_pred ---CCCCcCHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHh--CCCccCCCcC----cE--EEEeCCCHHHHHH
Confidence 1245667777777677752 345566677777788888887766 3666553322 22 3333335566766
Q ss_pred Hh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 309 AI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 309 ~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
.| +||.|++ | + +++||+++ +.+|+++|+++|++.
T Consensus 317 ~l~~~GI~Vr~---~--~-------------------~~iRis~~---~~~~~~~l~~al~~~ 352 (366)
T PRK01533 317 ACAHAGFIIRP---F--P-------------------NGVRITVG---TREQNEGVISVLQQH 352 (366)
T ss_pred HHHHCCcEEcc---C--C-------------------CceEEeCC---CHHHHHHHHHHHHHH
Confidence 66 8999984 2 1 67999999 899999999999863
|
|
| >PRK06225 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-22 Score=263.01 Aligned_cols=317 Identities=16% Similarity=0.156 Sum_probs=228.6
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCC
Q psy15216 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK 87 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd 87 (2602)
++++.+.+++.+++.....+. +.......++|+++++++|+++++|++|+|+|+|++.++.++. .+||
T Consensus 41 ~~~~~~~~a~~~~~~~~~~~~--------y~~~~g~~~lr~~ia~~l~~~~~~v~~~~g~t~al~~~~~~~~----~~gd 108 (380)
T PRK06225 41 GPHEEVREAMIRCIEEGEYCK--------YPPPEGFPELRELILKDLGLDDDEALITAGATESLYLVMRAFL----SPGD 108 (380)
T ss_pred CCCHHHHHHHHHHHhcCCCCC--------CCCCcchHHHHHHHHHhcCCCCCcEEEeCCHHHHHHHHHHHhc----CCCC
Confidence 778899999998876421111 1111236789999999999998999999999999999999987 7899
Q ss_pred EEEEcCCCCcccHHHHHHHHhCCcEEEEeccCC---CCccChHHHHhhccCCceEEEEecccCccccccc---HHHHHHH
Q psy15216 88 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN---NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIGEL 161 (2602)
Q Consensus 88 ~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~---~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~---l~~I~~l 161 (2602)
.|++++|.|+.+...+... |++++.++++. ++.+|++++++.++++++++++++|+||||.+++ +++|.++
T Consensus 109 ~vl~~~p~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NptG~~~~~~~~~~i~~~ 185 (380)
T PRK06225 109 NAVTPDPGYLIIDNFASRF---GAEVIEVPIYSEECNYKLTPELVKENMDENTRLIYLIDPLNPLGSSYTEEEIKEFAEI 185 (380)
T ss_pred EEEEcCCCCcchHHHHHHh---CceEEeeccccccCCccCCHHHHHhhcCCCceEEEEeCCCCCCCcCCCHHHHHHHHHH
Confidence 9999999998876555544 99999998642 4579999999999999999999999999999987 7788889
Q ss_pred HHhcCCEEEEeccccc---ccccc-cCCCCCccEEEeccccccCCCC--cEEEEEecCCCCcccceecCCCccccccccC
Q psy15216 162 CRSKGVIFHCDAAQAV---GKIDI-NIQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGT 235 (2602)
Q Consensus 162 a~~~g~~livD~a~a~---g~~~~-dl~~~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt 235 (2602)
|++||+++|+|+++.. +..+. .+. ....+++.|++|++|++| +||+++++++++.+.+... ....
T Consensus 186 a~~~~~~ii~De~y~~~~~~~~~~~~~~-~~~~i~~~s~SK~~g~~G~RiG~i~~~~~l~~~~~~~~~--------~~~~ 256 (380)
T PRK06225 186 ARDNDAFLLHDCTYRDFAREHTLAAEYA-PEHTVTSYSFSKIFGMAGLRIGAVVATPDLIEVVKSIVI--------NDLG 256 (380)
T ss_pred HHHCCcEEEEehhHHHHhccCCchhhcC-CCCEEEEeechhhcCCccceeEEEecCHHHHHHHHHHHh--------cccC
Confidence 9999999999999741 22111 111 134577889999989888 7999999887776654321 1123
Q ss_pred cchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc--cChhHHHHHh--C
Q psy15216 236 LATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF--IEGESLLMAI--K 311 (2602)
Q Consensus 236 ~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~L--~ 311 (2602)
.+..+..++.+++.....+.++..+.++++++.+.+.|.+ ++++.+...+. ...+..+.++. .+..++...| +
T Consensus 257 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~l~~~l~~~ 333 (380)
T PRK06225 257 TNVIAQEAAIAGLKVKDEWIDRIRRTTFKNQKLIKEAVDE-IEGVFLPVYPS--HGNMMVIDISEAGIDPEDLVEYLLER 333 (380)
T ss_pred CCHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHh-CcCCccccCCC--CCeEEEEEcccccCCHHHHHHHHHHC
Confidence 3444444454555533344566666667777778888876 56643321111 12333444432 4566777767 7
Q ss_pred CeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 312 DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 312 gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
||.+++|..|.+. ..++++|++++. +++++++++++|++.
T Consensus 334 gi~v~~g~~~~~~----------------~~~~~iR~s~~~--~~e~l~~~~~~l~~~ 373 (380)
T PRK06225 334 KIFVRQGTYTSKR----------------FGDRYIRVSFSI--PREQVEVFCEEFPDV 373 (380)
T ss_pred CEEEcCCcccCcC----------------CCCceEEEEeCC--CHHHHHHHHHHHHHH
Confidence 9999988655432 113789999974 789999999999864
|
|
| >PRK03158 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-22 Score=261.55 Aligned_cols=303 Identities=17% Similarity=0.140 Sum_probs=229.5
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCC
Q psy15216 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK 87 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd 87 (2602)
++++.+.+++.+.+.....+|.. ...++|+++|+++++++++|++|+|+++++..++.++. ++||
T Consensus 42 ~~~~~v~~a~~~~~~~~~~~p~~-----------g~~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~~~----~~gd 106 (359)
T PRK03158 42 GPSPKVKEAIAAHLDELALYPDG-----------YAPELRTKVAKHLGVDEEQLLFGAGLDEVIQMISRALL----NPGT 106 (359)
T ss_pred CCCHHHHHHHHHHHHHhhcCCCC-----------cHHHHHHHHHHHhCCCHHHEEECCCHHHHHHHHHHHHh----CCCC
Confidence 36788899988877653333332 35778999999999998999999999999999999887 7999
Q ss_pred EEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHh--c
Q psy15216 88 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRS--K 165 (2602)
Q Consensus 88 ~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~--~ 165 (2602)
.|++++|+|+.+...+... |++++.++.+ ++.+|++++++.++++++++++++|+||||.++|.++|.++++. +
T Consensus 107 ~v~~~~p~y~~~~~~~~~~---g~~~~~~~~~-~~~~d~~~l~~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~~~~~~~~ 182 (359)
T PRK03158 107 NTVMAEPTFSQYRHNAIIE---GAEVREVPLK-DGGHDLEAMLKAIDEQTKIVWICNPNNPTGTYVNHEELLSFLESVPS 182 (359)
T ss_pred EEEEcCCCHHHHHHHHHHc---CCeEEEEecC-CCCcCHHHHHHhcCCCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCC
Confidence 9999999999877666544 9999999987 67789999999999999999999999999999999999999876 5
Q ss_pred CCEEEEecccccccc----cc--c-CCCCCccEEEeccccccCCCC--cEEEEEecCCCCcccceecCCCccccccccCc
Q psy15216 166 GVIFHCDAAQAVGKI----DI--N-IQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTL 236 (2602)
Q Consensus 166 g~~livD~a~a~g~~----~~--d-l~~~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~ 236 (2602)
|+++|+|++|..... +. . +...+..+++.|++|.+|++| +||+++++++++.+..... ....
T Consensus 183 ~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~v~~~~~~~~~~~~~~---------~~~~ 253 (359)
T PRK03158 183 HVLVVLDEAYYEYVTAEDYPDTLPLLEKYENLIVLRTFSKAYGLAALRVGYGIASEELIEKLNIARP---------PFNT 253 (359)
T ss_pred CcEEEEECchHhhcCCcccccHHHHHHhcCCEEEEEechHhhcCcchhhehhcCCHHHHHHHHHhcC---------CCCC
Confidence 999999999853221 11 1 112334688889999999888 6999999887777654321 1235
Q ss_pred chhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcccChhHHHHHh--CCeE
Q psy15216 237 ATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDIA 314 (2602)
Q Consensus 237 ~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~ 314 (2602)
+.++..++..+++. ..+.++..+..++.++.+.+.|.+ . ++.+..+ . ..+..+.+ ..+..++.+.| +||.
T Consensus 254 ~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~l~~-~-~~~~~~~-~---g~~i~~~~-~~~~~~~~~~l~~~gv~ 325 (359)
T PRK03158 254 TRIAQYAAIAALED-QAFLKECVEKNAEGLEQYYAFCKE-Y-GLFYYPS-Q---TNFIFVDT-GRDANELFEALLKKGYI 325 (359)
T ss_pred CHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHH-C-CCeeCCC-c---CcEEEEEC-CCCHHHHHHHHHHCCeE
Confidence 55666666666652 234566667777888888888877 3 6655432 1 12222322 23456666666 7999
Q ss_pred EcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 315 VSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 315 v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
+++|..+.. ++++||+++ +.+|+++++++|++
T Consensus 326 v~~g~~f~~-------------------~~~iRi~~~---~~~~~~~l~~al~~ 357 (359)
T PRK03158 326 VRSGAALGF-------------------PTGVRITIG---LKEQNDKIIELLKE 357 (359)
T ss_pred EeeCCCCCC-------------------CCeEEEecC---CHHHHHHHHHHHHH
Confidence 998876532 278999998 89999999999985
|
|
| >TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.3e-22 Score=260.18 Aligned_cols=322 Identities=17% Similarity=0.199 Sum_probs=236.4
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhccccc--ccC
Q psy15216 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFY--KKR 85 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~--~~~ 85 (2602)
++.+.+.+++..++....+++.. + . ......+++++++|+++|+++.++++++|+++++..++.++.... .++
T Consensus 31 ~~~~~~~~a~~~~~~~~~~~~~~--~-~--~~~~~~~~~~~~la~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 105 (373)
T TIGR03812 31 NPHPIAVKAYDMFIETNLGDPGL--F-P--GTKKIEEEVVGSLGNLLHLPDAYGYIVSGGTEANIQAVRAAKNLAREEKR 105 (373)
T ss_pred CchHHHHHHHHHHhhcCCCCccc--C-c--cHHHHHHHHHHHHHHHhCCCCCCeEEeccHHHHHHHHHHHHHHHHhccCC
Confidence 45556678887776654444431 2 1 234567899999999999988888999999999988877654111 146
Q ss_pred CCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHhc
Q psy15216 86 GKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSK 165 (2602)
Q Consensus 86 gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~~ 165 (2602)
||+|++++++|+++...++. .|++++.++.++++.+|++++++++++++..+++.+++||||.+.|+++|.++||++
T Consensus 106 g~~vl~~~~~h~~~~~~~~~---~G~~~~~v~~~~~~~~d~~~l~~~l~~~~~~vv~~~~~~~tG~~~~~~~i~~l~~~~ 182 (373)
T TIGR03812 106 TPNIIVPESAHFSFEKAAEM---LGLELRYAPLDEDYTVDVKDVEDLIDDNTIGIVGIAGTTELGQIDDIEELSKIALEN 182 (373)
T ss_pred CcEEEECCcchHHHHHHHHH---cCCeEEEEeeCCCCCcCHHHHHHHHhhCcEEEEEECCCCCCCccCCHHHHHHHHHHc
Confidence 79999999999987665554 499999999888888999999999988886555556899999999999999999999
Q ss_pred CCEEEEecccccccc----------cccCCCCCccEEEeccccc-cCCCCcEEEE-EecCCCCccc---ceecCCCcccc
Q psy15216 166 GVIFHCDAAQAVGKI----------DINIQNYKVDLMSFSAHKI-YGPKGIGALY-IRRNPRTRIE---AQIHGGGHEYG 230 (2602)
Q Consensus 166 g~~livD~a~a~g~~----------~~dl~~~~~D~~~~S~~K~-~Gp~G~G~l~-~~~~~~~~l~---~~~~g~~~~~~ 230 (2602)
|+++++|++|+.+.. ++++...++|++++|+||+ ++|.++|+++ .++++++.+. |+..+. .+.
T Consensus 183 ~~~livD~a~~~~~~~~~~~~~~~~~~d~~~~~~d~~~~s~~K~~~~~~~~G~~~~~~~~~~~~l~~~~~~~~~~--~~~ 260 (373)
T TIGR03812 183 GIYLHVDAAFGGFVIPFLKKGYNPPPFDFSLPGVQSITIDPHKMGLSPIPAGGILFRSKSYLKYLSVDAPYLTVK--KQA 260 (373)
T ss_pred CCeEEEEcCchhHHHHHHhcCCCCCCccccCCCCCEEEECccccCCCcCCceEEEEeCHHHHhhhcccCcccCCC--CCc
Confidence 999999999975543 3344445789999999995 4565566554 5666655543 211111 111
Q ss_pred ccccCcchhHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcccChhHHHHH
Q psy15216 231 LRSGTLATHQIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMA 309 (2602)
Q Consensus 231 ~~~gt~~~~~~~al~~al~~~-~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (2602)
...||++...++++.++++.. .+++++..++..+++++++++|++ + ++..+.++ ..+++.+.++ +..++.+.
T Consensus 261 ~~~gt~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~---~~~~v~~~~~--~~~~v~~~ 333 (373)
T TIGR03812 261 TITGTRSGASAAATYAVIKYLGREGYRKIVAECMENTRYLVEELKK-I-GFEPVIEP---VLNIVAFEVD--DPEEVRKK 333 (373)
T ss_pred ceEeechhHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHh-C-CCeEEcCC---CceEEEEEeC--CHHHHHHH
Confidence 224788888888888999854 567889999999999999999987 4 44333221 1234444443 34567777
Q ss_pred h--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 310 I--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 310 L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
| +||.++... . ++++|++++.++|++|+++++++|++
T Consensus 334 L~~~gi~v~~~~---~-------------------~~~iRis~~~~~t~edid~l~~~L~~ 372 (373)
T TIGR03812 334 LRDRGWYVSVTR---C-------------------PKALRIVVMPHVTREHIEEFLEDLKE 372 (373)
T ss_pred HHHCCceeccCC---C-------------------CCEEEEEEECCCCHHHHHHHHHHHhh
Confidence 6 688886431 1 26899999999999999999999974
|
Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions. |
| >KOG2862|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.7e-22 Score=224.06 Aligned_cols=307 Identities=15% Similarity=0.210 Sum_probs=253.3
Q ss_pred hhhHHHHHHHHHHHHHHHhCCC-CCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEE
Q psy15216 36 GWTAEKAIEKARNEVAQLIYAD-PREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVT 114 (2602)
Q Consensus 36 ~~~~~~~~~~~r~~lA~~~g~~-~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~ 114 (2602)
+.+..+.++++++-+...|... +.-.++..+++.|++.++..+. .|||.|++-...-.+ .+++..+++.|+++.
T Consensus 45 sPe~~qIm~~v~egikyVFkT~n~~tf~isgsGh~g~E~al~N~l----ePgd~vLv~~~G~wg-~ra~D~~~r~ga~V~ 119 (385)
T KOG2862|consen 45 SPEFVQIMDEVLEGIKYVFKTANAQTFVISGSGHSGWEAALVNLL----EPGDNVLVVSTGTWG-QRAADCARRYGAEVD 119 (385)
T ss_pred CHHHHHHHHHHHHHHHHHhccCCCceEEEecCCcchHHHHHHhhc----CCCCeEEEEEechHH-HHHHHHHHhhCceee
Confidence 4566788999999999999874 3457888888999999999888 799999987655555 367788889999999
Q ss_pred EeccCCCCccChHHHHhhcc-CCceEEEEecccCccccccc-HHHHHHHHHhcCCEEEEecccccccccccCCCCCccEE
Q psy15216 115 YLKPKNNGLITLSQLEEKIC-SDTILVSVMLVNNEIGVIQP-ILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLM 192 (2602)
Q Consensus 115 ~v~~~~~~~ld~e~l~~~i~-~~tklv~i~~~~npTG~~~~-l~~I~~la~~~g~~livD~a~a~g~~~~dl~~~~~D~~ 192 (2602)
.++.+++....++.+.+++. .++++++++|..+.||...| ++.+.++||+|+++++||.+.+.|..++.+++|++|+.
T Consensus 120 ~v~~~~G~~~~le~i~~~lsqh~p~~vfv~hgdsSTgV~q~~~~~~g~lc~k~~~lllVD~VaSlggt~F~mDewgVDva 199 (385)
T KOG2862|consen 120 VVEADIGQAVPLEEITEKLSQHKPKAVFVTHGDSSTGVLQDLLAISGELCHKHEALLLVDTVASLGGTEFEMDEWGVDVA 199 (385)
T ss_pred EEecCcccCccHHHHHHHHHhcCCceEEEEecCccccccchHHHHHHHHhhcCCeEEEEechhhcCCccceehhhcccEE
Confidence 99988888999999999996 56799999999999999999 77788999999999999999999999999999999999
Q ss_pred Eecccc-ccCCCCcEEEEEecCCCCcccce-------e---------cCCCccccccccCcchhHHHHHHHHHH-HHHHh
Q psy15216 193 SFSAHK-IYGPKGIGALYIRRNPRTRIEAQ-------I---------HGGGHEYGLRSGTLATHQIVGMGEAFR-LARIE 254 (2602)
Q Consensus 193 ~~S~~K-~~Gp~G~G~l~~~~~~~~~l~~~-------~---------~g~~~~~~~~~gt~~~~~~~al~~al~-~~~~~ 254 (2602)
....+| +.+|+|++.+..+++..++++.. + ++..++.+..+.|+++..++++++||. +.+++
T Consensus 200 ytgSQKaL~aP~GLsiisfS~ka~~~~~~rK~~~~~~yFd~~~~~~~wgc~~e~~~yhhT~pv~lly~Lr~AL~~I~eeG 279 (385)
T KOG2862|consen 200 YTGSQKALGAPAGLSIISFSDKALEAIRDRKTKPVSFYFDILRLGNFWGCDGEPRAYHHTPPVQLLYSLRAALALIAEEG 279 (385)
T ss_pred EecchhhcCCCCCcceeecCHHHHHHHhhccCCceEEEEeHHhhcchhccCCcccccccCCcHHHHHHHHHHHHHHHHHH
Confidence 999999 66799999999988765544321 1 122234456678999999999999999 56788
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCceEEeC-CCCCCCCceEEEEEc-ccChhHHHHHh---CCeEEcccccCCCCCCChH
Q psy15216 255 MKEELKRILFLQKRLYNGLMESIEEIYING-DMNNRIPHNLNISFN-FIEGESLLMAI---KDIAVSSGSACTSASLEPS 329 (2602)
Q Consensus 255 ~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~-~~~~~~~~~~~~~~~-~~~~~~~~~~L---~gI~v~~g~~~~~~~~~~~ 329 (2602)
+++..++++++.++++..|.+ .|+++.. .+..+.|....+.+| +.|..+++.++ ..+.+..|.....
T Consensus 280 L~~~~~rH~e~s~~l~~~l~~--~GLq~fv~~e~~rlptvttv~vp~gvDw~dVv~~~~~~~~vei~gglg~~~------ 351 (385)
T KOG2862|consen 280 LENSWRRHREMSKWLKLSLEA--LGLQLFVVDEELRLPTVTTVKVPYGVDWKDVVAYAMSHYVVEIGGGLGPTV------ 351 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--hCccceecChhhccCcceeeecCCCCCHHHHHHHHHHhcCEEeccccCCCc------
Confidence 999999999999999999988 5777654 445567777777776 57888888777 4666665544333
Q ss_pred HHHHHcCCCccCCCCeEEEec-CCCCCHHHHHHHHHHHHh
Q psy15216 330 YVLRALGCNDELAHSSIRFTI-GRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 330 ~~~~~~g~~~~~~~~~iRis~-~~~~t~edid~li~~L~~ 368 (2602)
..++||.+ +...+.+-|+..++.|+.
T Consensus 352 -------------gKv~RIGl~gcna~~e~i~~v~~ll~~ 378 (385)
T KOG2862|consen 352 -------------GKVFRIGLLGCNANVEYIDNVVELLKL 378 (385)
T ss_pred -------------ccEEEEEEeeccCCcHHHHHHHHHHHH
Confidence 37899985 777888999999999885
|
|
| >PRK05957 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.8e-22 Score=259.37 Aligned_cols=321 Identities=16% Similarity=0.155 Sum_probs=231.7
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCC---CCcEEEeCCHHHHHHHHHHhccccccc
Q psy15216 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYAD---PREIIWTSGATESNNLAIKGAAHFYKK 84 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~---~~~Iv~t~g~T~al~~~~~~l~~~~~~ 84 (2602)
++|+.+.+++.+++... ....|........+.+.+++++++++|.+ +++|++|+|+++++..++.++. +
T Consensus 40 ~~~~~~~~a~~~~~~~~----~~~~Y~~~~G~~~lr~~~~~~l~~~~g~~~~~~~~i~~t~G~~~~l~~~~~~~~----~ 111 (389)
T PRK05957 40 PPPPEAIEALNNFLANP----ENHKYQAVQGIPPLLEAITQKLQQDNGIELNNEQAIVVTAGSNMAFMNAILAIT----D 111 (389)
T ss_pred CCCHHHHHHHHHHHhCC----CCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCChHHHHHHHHHHhc----C
Confidence 67888899998877532 11122222334567788889999988873 6689999999999999998886 7
Q ss_pred CCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccCCceEEEEecccCccccccc---HHHHHHH
Q psy15216 85 RGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIGEL 161 (2602)
Q Consensus 85 ~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~---l~~I~~l 161 (2602)
+||+|++++|.|+.+...++. .|++++.++.+.++.+|++++++++++++++++++||+||||.++| +++|+++
T Consensus 112 ~gd~Vlv~~P~y~~~~~~~~~---~g~~~~~v~~~~~~~~d~~~l~~~i~~~~klv~~~~p~NPtG~~~~~~~~~~i~~~ 188 (389)
T PRK05957 112 PGDEIILNTPYYFNHEMAITM---AGCQPILVPTDDNYQLQPEAIEQAITPKTRAIVTISPNNPTGVVYPEALLRAVNQI 188 (389)
T ss_pred CCCEEEEeCCCCcCHHHHHHh---cCCEEEEeecCCCCCcCHHHHHHhcCcCceEEEEeCCCCCCCcCcCHHHHHHHHHH
Confidence 999999999999987665544 4999999998877889999999999999999999999999999998 7889999
Q ss_pred HHhcCCEEEEeccccccc------cc-ccC-CCCCccEEEeccccccCCCC--cEEEEEecCCCCcccceecCCCccccc
Q psy15216 162 CRSKGVIFHCDAAQAVGK------ID-INI-QNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGL 231 (2602)
Q Consensus 162 a~~~g~~livD~a~a~g~------~~-~dl-~~~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~ 231 (2602)
|++||+++++|++++... .+ ..+ ......+++.|++|.+|++| +||+++++++++++..... .
T Consensus 189 a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~~~~~~~~~~-------~ 261 (389)
T PRK05957 189 CAEHGIYHISDEAYEYFTYDGVKHFSPGSIPGSGNHTISLYSLSKAYGFASWRIGYMVIPIHLLEAIKKIQD-------T 261 (389)
T ss_pred HHHcCcEEEEeccchhccCCCCCccChhhCCCccCcEEEEecchhhccCccceeEEEecCHHHHHHHHHHHh-------h
Confidence 999999999999975221 11 111 11223478889999999999 9999999888777764331 1
Q ss_pred cccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCce-EEeCCCCCCCCceEEEEEc-ccChhHHHHH
Q psy15216 232 RSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEI-YINGDMNNRIPHNLNISFN-FIEGESLLMA 309 (2602)
Q Consensus 232 ~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~-~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 309 (2602)
...+++.+...++..+|+....++++..++++++++.+.+.|.+ ++++ .+..+.. ...+++.++ ..+..++...
T Consensus 262 ~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~-~~~~~~~~~~~g---g~~~~~~~~~~~~~~~~~~~ 337 (389)
T PRK05957 262 ILICPPVVSQYAALGALQVGKSYCQQHLPEIAQVRQILLKSLGQ-LQDRCTLHPANG---AFYCFLKVNTDLNDFELVKQ 337 (389)
T ss_pred cccCCCcHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHh-cCCCccccCCCe---eEEEEEeCCCCCChHHHHHH
Confidence 12233334444444555422234667777788888899999976 5553 3332211 112223333 3456677776
Q ss_pred h---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 310 I---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 310 L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
+ +||.+.+|..|... ..+++||+++.. +.++++..+++|.+
T Consensus 338 l~~~~gv~v~pg~~f~~~-----------------~~~~iRis~~~~-~~~~l~~~~~~l~~ 381 (389)
T PRK05957 338 LIREYRVAVIPGTTFGMK-----------------NGCYLRIAYGAL-QKATAKEGIERLVQ 381 (389)
T ss_pred HHHHCCEEEccchhhCCC-----------------CCCEEEEEEecC-CHHHHHHHHHHHHH
Confidence 5 59999999876432 137999999754 57788888888875
|
|
| >TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.6e-22 Score=255.75 Aligned_cols=326 Identities=15% Similarity=0.152 Sum_probs=227.9
Q ss_pred CCCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccC
Q psy15216 6 TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKR 85 (2602)
Q Consensus 6 ~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~ 85 (2602)
.++.+..+.+++.++.....+.+.. .........+...++++.+|+++|++ .+++++|+++++..++.++. ++
T Consensus 17 ~g~~~~~~~~a~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~e~lA~~~g~~--~~~i~~g~~~a~~~~~~~l~----~~ 89 (370)
T TIGR02539 17 GGVLTEAARKALVEFGDGYSVCDFC-GGRLDQITKPPIHDFLEDLAEFLGMD--EARVTHGAREGKFAVMHALC----KE 89 (370)
T ss_pred CCCCcHHHHHHHHHHhhcccccccc-ccccccccchHHHHHHHHHHHHhCCC--ceEEECChHHHHHHHHHHhh----CC
Confidence 4566677777777765421111111 01111122345678888999999986 45678999999999999997 89
Q ss_pred CCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccC--CCCccChHHHHhhccC-------CceEEEEecccCcccccccHH
Q psy15216 86 GKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK--NNGLITLSQLEEKICS-------DTILVSVMLVNNEIGVIQPIL 156 (2602)
Q Consensus 86 gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~--~~~~ld~e~l~~~i~~-------~tklv~i~~~~npTG~~~~l~ 156 (2602)
||.|+++.+.|.+....+ +..|++++.++.+ +++.+|+++|++++++ ++++|++++|+||||.+.|++
T Consensus 90 gd~Vl~~~~~h~s~~~~~---~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~~l~ 166 (370)
T TIGR02539 90 GDWVVLDGLAHYTSYVAA---ERAGLNVKEVPHTGHPEYKVDPEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPDAG 166 (370)
T ss_pred CCEEEECCcccHHHHHHH---HHcCCEEEEEecCCcccCCcCHHHHHHHHHHhhhccCCCcEEEEEECCCCCCccccCHH
Confidence 999999999988876543 4459999999976 3578999999999863 688999999999999999999
Q ss_pred HHHHHHHhcCCEEEEecccccccccccCCCCCccEEEeccccccCCCC-cEEEEEecCCCCcccceecCCCccc-ccccc
Q psy15216 157 EIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKG-IGALYIRRNPRTRIEAQIHGGGHEY-GLRSG 234 (2602)
Q Consensus 157 ~I~~la~~~g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K~~Gp~G-~G~l~~~~~~~~~l~~~~~g~~~~~-~~~~g 234 (2602)
+|.++|+++|+++++|++|+.|..+++...+++|+++.|+||++|+.| +||+++++++++.+......+.... .+..+
T Consensus 167 ~i~~la~~~~~~livDea~~~g~~~~~~~~~~~di~v~s~sK~~~~~g~~G~l~~~~~~i~~l~~~~~~~~~~~~~~~~~ 246 (370)
T TIGR02539 167 KVAKVCREKGVPLLLNCAYTVGRMPVSAKEIGADFIVGSGHKSMAASGPCGVLGMSEEWEDIVLRKSRYSPVKEVELLGC 246 (370)
T ss_pred HHHHHHHHcCCeEEEECccccCCcCCCHHHcCCCEEEeeCcccccCCCCEEEEEECHHHHhhhcccccCCccceeeeecc
Confidence 999999999999999999999877767666788999999999877543 8999999998887765443221111 11223
Q ss_pred CcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEccc---------ChhH
Q psy15216 235 TLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI---------EGES 305 (2602)
Q Consensus 235 t~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~---------~~~~ 305 (2602)
+.......++.+++....+.++...+. .++++++++.|.+ .|+.++..... ..+++.+.++.. +...
T Consensus 247 ~~~~~~~~~~~~al~~~~~~l~~~~~~-~~~~~~l~~~L~~--~g~~~~~~~~s-~t~~v~~~~~~~~~~~~~~~~~~~~ 322 (370)
T TIGR02539 247 TSRGAPIVTMMASFPHVVERVKRWDEE-VKKTRWFVAELED--IGFIQLGQKPK-EHDLVKFETPGFHEIAQKHKRRGYF 322 (370)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHh--CCcEEEccCCC-cCceEEEECCchhHHhhhhccccHH
Confidence 444445555556665433334333333 4445689999988 47776532111 234444554432 1224
Q ss_pred HHHHh--CCeE-EcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 306 LLMAI--KDIA-VSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 306 ~~~~L--~gI~-v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
+.+.| +||. ++++. .+++|+++. ..+++|+++++++|++.
T Consensus 323 ~~~~L~e~GI~~ir~~~-----------------------~~~iRis~~-~~t~e~i~~l~~~L~~~ 365 (370)
T TIGR02539 323 LYEELKKRGIHGIRSGQ-----------------------TKYFKLSVY-GLTKEQVEYVVDSFEEI 365 (370)
T ss_pred HHHHHHhCCCccccCCc-----------------------ceEEEEEec-CCCHHHHHHHHHHHHHH
Confidence 55666 6775 44211 268999983 35999999999999864
|
Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA. |
| >PRK01688 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.4e-23 Score=261.41 Aligned_cols=281 Identities=17% Similarity=0.164 Sum_probs=208.5
Q ss_pred HHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCC-CEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCC
Q psy15216 43 IEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRG-KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN 121 (2602)
Q Consensus 43 ~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~g-d~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~ 121 (2602)
..++++++++++|+++++|++|+|+++++.+++.++. ++| |.|+++.|+|+.+...++.. |++++.++.+++
T Consensus 59 ~~~l~~~~a~~~g~~~~~I~~~~Gs~e~i~~~~~~~~----~~g~~~vli~~P~y~~y~~~~~~~---G~~~~~v~~~~~ 131 (351)
T PRK01688 59 PKAVIENYAAYAGVKPEQVLVSRGADEGIELLIRAFC----EPGKDAILYCPPTYGMYSVSAETI---GVEIRTVPTLDN 131 (351)
T ss_pred hHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHhc----CCCCCEEEEcCCCHHHHHHHHHHc---CCEEEEeecCCC
Confidence 3688999999999999999999999999999999987 786 89999999999877666554 999999998878
Q ss_pred CccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHh--cCCEEEEecccccccc---cccC-CCCCccEEEec
Q psy15216 122 GLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRS--KGVIFHCDAAQAVGKI---DINI-QNYKVDLMSFS 195 (2602)
Q Consensus 122 ~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~--~g~~livD~a~a~g~~---~~dl-~~~~~D~~~~S 195 (2602)
+.+|++++++++ +++++++++|||||||++++.++|.++++. .++++|+|++|..-.. ..++ ...+.-+++.|
T Consensus 132 ~~~d~~~l~~~~-~~~~lv~l~nPnNPTG~~~~~~~l~~l~~~~~~~~~vivDEay~~f~~~~s~~~~~~~~~n~iv~rS 210 (351)
T PRK01688 132 WQLDLPAIADNL-DGVKVVYVCSPNNPTGNLINPQDLRTLLELTRGKAIVVADEAYIEFCPQASLAGWLAEYPHLVILRT 210 (351)
T ss_pred CCCCHHHHHHhc-cCCcEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchhhcCCCCChHHHHhhCCCEEEEec
Confidence 889999999988 689999999999999999998887777653 2689999999853221 1111 22233477789
Q ss_pred cccccCCCC--cEEEEEecCCCCcccceecCCCccccccccCcchhHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHH
Q psy15216 196 AHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRL-ARIEMKEELKRILFLQKRLYNG 272 (2602)
Q Consensus 196 ~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~-~~~~~~~~~~~~~~l~~~l~~~ 272 (2602)
|||.||++| +||+++++++++.+..... .++.+.+...++.++|.. ..+++.+.++++.+.++++.+.
T Consensus 211 fSK~~glaGlRiGy~i~~~~~i~~l~~~~~---------~~~v~~~~~~~a~~~L~~~~~~~~~~~~~~~~~~r~~l~~~ 281 (351)
T PRK01688 211 LSKAFALAGLRCGFTLANEEVINLLLKVIA---------PYPLSTPVADIAAQALSPQGIAAMRERVAEINANRQWLIAA 281 (351)
T ss_pred chHhhcCHHHHHhHHhCCHHHHHHHHhccC---------CCCCCHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999 6999999888777664432 223343333334445542 1234667777778888999999
Q ss_pred HhhccCceEEeCCCCCCCCceEEEEEcccChhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEec
Q psy15216 273 LMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTI 350 (2602)
Q Consensus 273 L~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~ 350 (2602)
|.+ ++++..+.++. .+++.+.++ +..++.+.| +||.++.+..+. |. .+++|||+
T Consensus 282 L~~-~~~~~~~~ps~---~nfi~~~~~--~~~~l~~~L~~~gi~vr~~~~~~-------------~~-----~~~iRis~ 337 (351)
T PRK01688 282 LKE-IPCVEQVFDSE---TNYILARFT--ASSAVFKSLWDQGIILRDQNKQP-------------GL-----SNCLRITI 337 (351)
T ss_pred HHh-CCCCCeECCCC---CcEEEEEcC--CHHHHHHHHHHCCeEEEECCCcC-------------CC-----CCeEEEeC
Confidence 977 66764232322 223333333 566677666 799998654321 11 37999999
Q ss_pred CCCCCHHHHHHHHHHHH
Q psy15216 351 GRFTTEKEIDFTIKLLK 367 (2602)
Q Consensus 351 ~~~~t~edid~li~~L~ 367 (2602)
+ +.+|+++++++|+
T Consensus 338 ~---~~~e~~~l~~al~ 351 (351)
T PRK01688 338 G---TREECQRVIDALR 351 (351)
T ss_pred C---CHHHHHHHHHhhC
Confidence 9 7899999999884
|
|
| >PRK07681 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.9e-22 Score=261.69 Aligned_cols=313 Identities=14% Similarity=0.120 Sum_probs=226.8
Q ss_pred CCCHHHHHHHHHHHhhh--cCCCCCCCcchhhhHHHHHHHHHHHHHHHhC------CCC-CcEEEeCCHHHHHHHHHHhc
Q psy15216 8 PIDPRVVDKMIPYLRVQ--FGNPASRNHIYGWTAEKAIEKARNEVAQLIY------ADP-REIIWTSGATESNNLAIKGA 78 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~--~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g------~~~-~~Iv~t~g~T~al~~~~~~l 78 (2602)
++++.+.+++.+.+... ++++. ....++|+.+|++++ +++ ++|++|+|+++|+.+++.++
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~y~~-----------~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~~ 113 (399)
T PRK07681 45 PPADFVREEMVHTANQKESYGYTL-----------SGIQEFHEAVTEYYNNTHNVILNADKEVLLLMGSQDGLVHLPMVY 113 (399)
T ss_pred CCCHHHHHHHHHHHhccccCCCCC-----------CCcHHHHHHHHHHHHHHhCCCCCCCCeEEECCCcHHHHHHHHHHh
Confidence 36777888888776531 11211 124556777777663 477 78999999999999999988
Q ss_pred ccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCC--CccChHHHHhhccCCceEEEEecccCccccccc--
Q psy15216 79 AHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN--GLITLSQLEEKICSDTILVSVMLVNNEIGVIQP-- 154 (2602)
Q Consensus 79 ~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~--~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~-- 154 (2602)
. ++||.|++++|.|+.+...+... |++++.++++++ +.+|++++++++.++++++++++||||||.+++
T Consensus 114 ~----~~Gd~Vlv~~P~y~~~~~~~~~~---G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~v~l~~P~NPTG~~~s~~ 186 (399)
T PRK07681 114 A----NPGDIILVPDPGYTAYETGIQMA---GATSYYMPLKKENDFLPDLELIPEEIADKAKMMILNFPGNPVPAMAHED 186 (399)
T ss_pred C----CCCCEEEECCCCccchHHHHHhc---CCEEEEEecCCCCCCcCCHHHHHHhccccceEEEEeCCCCCcCcCCCHH
Confidence 7 89999999999999988777665 999999998753 468999999999889999999999999999999
Q ss_pred -HHHHHHHHHhcCCEEEEeccccccc----ccccC---CC-CCccEEEeccccccCCCC--cEEEEEecCCCCcccceec
Q psy15216 155 -ILEIGELCRSKGVIFHCDAAQAVGK----IDINI---QN-YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIH 223 (2602)
Q Consensus 155 -l~~I~~la~~~g~~livD~a~a~g~----~~~dl---~~-~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~ 223 (2602)
+++|+++|++||+++|+|++|+... .+..+ .. .+..+++.|+||.+|++| +||+++++++++.+.....
T Consensus 187 ~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~i~~~~l~~~~~~~~~ 266 (399)
T PRK07681 187 FFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLSVPGAKEVGVEINSLSKSYSLAGSRIGYMIGNEEIVRALTQFKS 266 (399)
T ss_pred HHHHHHHHHHHcCeEEEEeccchhheeCCCCCCChhhCCCCcccEEEEeecccccCCccceeEEEecCHHHHHHHHHHHh
Confidence 6678888999999999999986321 11111 11 123578889999999888 8999998887776654321
Q ss_pred CCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc-cC
Q psy15216 224 GGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IE 302 (2602)
Q Consensus 224 g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~-~~ 302 (2602)
....+.+.+...++..+|+....++++.+++++++++.+.+.|.+ . ++.+..+.. ....++.++. .+
T Consensus 267 -------~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~p~~---g~f~~~~l~~~~~ 334 (399)
T PRK07681 267 -------NTDYGVFLPIQKAACAALRNGAAFCEKNRGIYQERRDTLVDGFRT-F-GWNVDKPAG---SMFVWAEIPKGWT 334 (399)
T ss_pred -------hcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH-C-CCcccCCCe---eeEEEEECCCCCC
Confidence 112345555555565666533345677777888888899999977 3 665543322 1223333332 34
Q ss_pred hhHHHHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 303 GESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 303 ~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
..++...+ +||.+.+|..|... ..+++||+++ .+.++++.++++|++.
T Consensus 335 ~~~~~~~l~~~~gv~v~pg~~f~~~-----------------~~~~iRis~~--~~~~~~~~~l~~l~~~ 385 (399)
T PRK07681 335 SLSFAYALMDRANVVVTPGHAFGPH-----------------GEGFVRIALV--QDEEVLQQAVENIRNS 385 (399)
T ss_pred HHHHHHHHHHhCCEEEeCChhhCcC-----------------CCCeEEEEec--CCHHHHHHHHHHHHHh
Confidence 55666665 59999998766431 1379999998 4789999999999863
|
|
| >cd06450 DOPA_deC_like DOPA decarboxylase family | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-22 Score=260.35 Aligned_cols=281 Identities=22% Similarity=0.204 Sum_probs=218.9
Q ss_pred cchhhhHHHHHHHHHHHHHHHhCCC--CCcEEEeCCHHHHHHHHHHhccccccc--------C--CCEEEEcCCCCcccH
Q psy15216 33 HIYGWTAEKAIEKARNEVAQLIYAD--PREIIWTSGATESNNLAIKGAAHFYKK--------R--GKHIITVQTEHKSVL 100 (2602)
Q Consensus 33 ~~~~~~~~~~~~~~r~~lA~~~g~~--~~~Iv~t~g~T~al~~~~~~l~~~~~~--------~--gd~Vlv~~~~~~s~~ 100 (2602)
|..+.....+.+++++++++++|.+ +.++++|+|+|+|+.+++.++...... + +++|++++++|+++.
T Consensus 30 y~~~~~~~~le~~~~~~~~~~~g~~~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~h~~~~ 109 (345)
T cd06450 30 WDESPAATEMEAEVVNWLAKLFGLPSEDADGVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQAHVSVE 109 (345)
T ss_pred cccCchhHHHHHHHHHHHHHHhCCCCCCCCEEEeCChhHHHHHHHHHHHHHhhhhhhcccccccCCeEEEEcCcchhHHH
Confidence 4555566778889999999999985 457999999999999999988632111 2 458999999999988
Q ss_pred HHHHHHHhCCcEEEEeccCCCCccChHHHHhhccC------CceEEEEecccCcccccccHHHHHHHHHhcCCEEEEecc
Q psy15216 101 DSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS------DTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAA 174 (2602)
Q Consensus 101 ~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~------~tklv~i~~~~npTG~~~~l~~I~~la~~~g~~livD~a 174 (2602)
.++..+ |++++.+++++++.+|+++|++++++ +++++++++++||||.+.|+++|+++|+++|+++|+|++
T Consensus 110 ~~~~~~---g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~l~vD~a 186 (345)
T cd06450 110 KAAAYL---DVKVRLVPVDEDGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDPLEEIADLAEKYDLWLHVDAA 186 (345)
T ss_pred HHHHHH---hcCeEEeeeCCCCCcCHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCCCCHHHHHHHHHHhCCeEEEech
Confidence 888766 89999999888889999999999987 889999999999999999999999999999999999999
Q ss_pred cccccccccCCC------CCccEEEecccc-ccCCCCcEEEEEecCCCCcccceecCCCccccccccCcchhHHHHHHHH
Q psy15216 175 QAVGKIDINIQN------YKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEA 247 (2602)
Q Consensus 175 ~a~g~~~~dl~~------~~~D~~~~S~~K-~~Gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~a 247 (2602)
|+.+..+.+... .++|++++|+|| +++|.|+|+++++ .+++.++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~p~g~g~~~~~-----------------------------~~~~~~~ 237 (345)
T cd06450 187 YGGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVPLGCSAVLVR-----------------------------ALKLWAT 237 (345)
T ss_pred hhHHHhhChhhHHHhcCccccCEEEEchhHhhCCCcchHHHHHH-----------------------------HHHHHHH
Confidence 998876543221 268999999999 4578889988765 3444555
Q ss_pred HHH-HHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc-----cChhHHHHHh--CCeEEcccc
Q psy15216 248 FRL-ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-----IEGESLLMAI--KDIAVSSGS 319 (2602)
Q Consensus 248 l~~-~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~~L--~gI~v~~g~ 319 (2602)
+++ ...+++++.++..++++++.+.|.+ ++++.++.++. ..++.+.++. .+..++.+.| +++.+.++.
T Consensus 238 l~~l~~~g~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~---~~iv~f~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~ 313 (345)
T cd06450 238 LRRFGRDGYGEHIDRIVDLAKYLAELIRA-DPGFELLGEPN---LSLVCFRLKPSVKLDELNYDLSDRLNERGGWHVPAT 313 (345)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHhc-CCCeEEecCCc---eeEEEEEECCcchhhHHHHHHHHHHHhcCCEEEEee
Confidence 663 3466889999999999999999987 78888775432 2344555543 2345666666 444443322
Q ss_pred cCCCCCCChHHHHHHcCCCccCCCCeEEEecCCC-CCHHHHHHHHHHHHh
Q psy15216 320 ACTSASLEPSYVLRALGCNDELAHSSIRFTIGRF-TTEKEIDFTIKLLKM 368 (2602)
Q Consensus 320 ~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~-~t~edid~li~~L~~ 368 (2602)
.+. ..+++|++++.+ +|.+|+++++++|++
T Consensus 314 ~~~-------------------~~~~lRis~~~~~~t~~di~~l~~~l~~ 344 (345)
T cd06450 314 TLG-------------------GPNVLRFVVTNPLTTRDDADALLEDIER 344 (345)
T ss_pred EEC-------------------CeEEEEEEecCCCCCHHHHHHHHHHHHh
Confidence 111 136899999876 599999999999985
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. |
| >cd06450 DOPA_deC_like DOPA decarboxylase family | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-22 Score=260.77 Aligned_cols=281 Identities=22% Similarity=0.204 Sum_probs=218.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHhCCC--CCcEEEeCCHHHHHHHHHHhhhhhhcc--------C--CCEEEEcCCCCcchH
Q psy15216 1429 HIYGWTAEKAIEKARNEVAQLIYAD--PREIIWTSGATESNNLAIKGAAHFYKK--------R--GKHIITVQTEHKSVL 1496 (2602)
Q Consensus 1429 ~~~~~~~~~~~~~lr~~ia~~~g~~--~~~iv~t~gaT~al~~al~~l~~~~~~--------~--gd~Vlv~~~~~~s~~ 1496 (2602)
|..+....++.+++++++++++|.+ +.+++||+|+|+|+..++.++...... + +++|++++++|+++.
T Consensus 30 y~~~~~~~~le~~~~~~~~~~~g~~~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~h~~~~ 109 (345)
T cd06450 30 WDESPAATEMEAEVVNWLAKLFGLPSEDADGVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQAHVSVE 109 (345)
T ss_pred cccCchhHHHHHHHHHHHHHHhCCCCCCCCEEEeCChhHHHHHHHHHHHHHhhhhhhcccccccCCeEEEEcCcchhHHH
Confidence 4555666778889999999999985 457999999999999999988632111 2 448999999999988
Q ss_pred HHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccC------CceEEEEeccccccccccChHHHHHHhhhcCCEEEEecc
Q psy15216 1497 DSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS------DTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAA 1570 (2602)
Q Consensus 1497 ~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~------~t~lv~l~~~~n~tG~~~~l~~I~~ia~~~gi~vivD~a 1570 (2602)
.++..+ |.+++.+++++++.+|+++|++++++ +++++++++++|+||.+.|+++|+++|++||+++++|++
T Consensus 110 ~~~~~~---g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~l~vD~a 186 (345)
T cd06450 110 KAAAYL---DVKVRLVPVDEDGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDPLEEIADLAEKYDLWLHVDAA 186 (345)
T ss_pred HHHHHH---hcCeEEeeeCCCCCcCHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCCCCHHHHHHHHHHhCCeEEEech
Confidence 777766 88999999988888999999999987 889999999999999999999999999999999999999
Q ss_pred cccCcccccCCC------CCccEEEEcccc-ccCCCceEEEEEecCCCCccccccccCCccccCCCCCcchhHHHHHHHH
Q psy15216 1571 QAVGKIDINIQN------YKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEA 1643 (2602)
Q Consensus 1571 ~~~g~~~~~l~~------~~~D~~v~S~~K-~~gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~a 1643 (2602)
|+.+..+.+... .++|++++|+|| +++|.|+|+++++ ..++.++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~p~g~g~~~~~-----------------------------~~~~~~~ 237 (345)
T cd06450 187 YGGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVPLGCSAVLVR-----------------------------ALKLWAT 237 (345)
T ss_pred hhHHHhhChhhHHHhcCccccCEEEEchhHhhCCCcchHHHHHH-----------------------------HHHHHHH
Confidence 998876543222 268999999999 5678889998876 3444455
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEec-----CCcHHHHHhc--CCEEEcccc
Q psy15216 1644 FRL-ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-----IEGESLLMAI--KDIAVSSGS 1715 (2602)
Q Consensus 1644 L~~-~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~-----~~~~~~~~~L--~gI~v~~g~ 1715 (2602)
++. ...+++++.++..++++++.+.|.+ .+++.+..++. ..+..|.++. .+..++...| +++.+.++.
T Consensus 238 l~~l~~~g~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~---~~iv~f~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~ 313 (345)
T cd06450 238 LRRFGRDGYGEHIDRIVDLAKYLAELIRA-DPGFELLGEPN---LSLVCFRLKPSVKLDELNYDLSDRLNERGGWHVPAT 313 (345)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHhc-CCCeEEecCCc---eeEEEEEECCcchhhHHHHHHHHHHHhcCCEEEEee
Confidence 653 3467889999999999999999987 78888765432 2344444443 2334566666 444443332
Q ss_pred ccCCCCCChhHHHHHcCCCccccCCeEEEecCCC-CCHHHHHHHHHHHHH
Q psy15216 1716 ACTSASLEPSYVLRALGCNDELAHSSIRFTIGRF-TTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1716 ~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~-~t~edid~li~~L~~ 1764 (2602)
.+. ..+++|++++.+ +|.+|+++++++|++
T Consensus 314 ~~~-------------------~~~~lRis~~~~~~t~~di~~l~~~l~~ 344 (345)
T cd06450 314 TLG-------------------GPNVLRFVVTNPLTTRDDADALLEDIER 344 (345)
T ss_pred EEC-------------------CeEEEEEEecCCCCCHHHHHHHHHHHHh
Confidence 211 126899999986 599999999999985
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. |
| >PRK06207 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.5e-22 Score=258.53 Aligned_cols=318 Identities=16% Similarity=0.132 Sum_probs=226.2
Q ss_pred CCCHHHHHHHHHHHhhh--cCCCCCCCcchhhhHHHHHHHHHHHHHHHhCC--CC-CcEEEeCCHHHHHHHHHHhccccc
Q psy15216 8 PIDPRVVDKMIPYLRVQ--FGNPASRNHIYGWTAEKAIEKARNEVAQLIYA--DP-REIIWTSGATESNNLAIKGAAHFY 82 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~--~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~--~~-~~Iv~t~g~T~al~~~~~~l~~~~ 82 (2602)
++|+.+.+++.+.+... ..|++. ....++.+.+.+++++++|. ++ ++|++|+|+++++.+++.++.
T Consensus 53 ~p~~~~~~~~~~~~~~~~~~~Y~~~------~G~~~LR~aia~~l~~~~g~~~~~~~~I~it~Ga~~al~~~~~~l~--- 123 (405)
T PRK06207 53 EPTPGAFELFSAGVERGGVQAYTEY------RGDADIRELLAARLAAFTGAPVDAADELIITPGTQGALFLAVAATV--- 123 (405)
T ss_pred CCCHHHHHHHHHHHhcCCCccCCCC------CCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHHHHHHHhc---
Confidence 46678888888877531 223221 12234556666667777785 66 799999999999999999987
Q ss_pred ccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccC-----CCCccChHHHHhhccCCceEEEEecccCccccccc---
Q psy15216 83 KKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK-----NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP--- 154 (2602)
Q Consensus 83 ~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~-----~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~--- 154 (2602)
++||+|++++|.|+.+...+..+ |++++.++++ .++.+|+++|+++++++++++++++||||||.+++
T Consensus 124 -~~Gd~Vlv~~P~y~~~~~~~~~~---g~~v~~v~~~~~~~~~~~~~d~~~l~~~~~~~~k~v~l~~P~NPTG~~~s~e~ 199 (405)
T PRK06207 124 -ARGDKVAIVQPDYFANRKLVEFF---EGEMVPVQLDYLSADKRAGLDLDQLEEAFKAGVRVFLFSNPNNPAGVVYSAEE 199 (405)
T ss_pred -CCCCEEEEeCCCchhHHHHHHHc---CCEEEEEeccccCcccCCCcCHHHHHHhhhhcCeEEEECCCCCCCCcCCCHHH
Confidence 89999999999999987666655 9999988875 24679999999999989999999999999999998
Q ss_pred HHHHHHHHHhcCCEEEEecccccc----cccccCCC----CCccEEEeccccccCCCC--cEEEEEecCCCCcccceecC
Q psy15216 155 ILEIGELCRSKGVIFHCDAAQAVG----KIDINIQN----YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHG 224 (2602)
Q Consensus 155 l~~I~~la~~~g~~livD~a~a~g----~~~~dl~~----~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g 224 (2602)
+++|+++|++||+++|+|++++.- .....+.. .+.-+++.||||.+|++| +||+++++++++.+.....
T Consensus 200 l~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~lpGlRiG~ii~~~~l~~~~~~~~~- 278 (405)
T PRK06207 200 IAQIAALARRYGATVIVDQLYSRLLYDGTSYTHLRALPIDPENVITIMGPSKTESLSGYRLGVAFGSPAIIDRMEKLQA- 278 (405)
T ss_pred HHHHHHHHHHcCCEEEEeccccccccCCCCCCchhcCCCCcCcEEEEecchhhccCcccceEEEEcCHHHHHHHHHHHh-
Confidence 666888899999999999998642 11111211 122378889999999888 9999998877776654321
Q ss_pred CCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc--cC
Q psy15216 225 GGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF--IE 302 (2602)
Q Consensus 225 ~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~--~~ 302 (2602)
......+.....++..+|+....++++..+++.+.++++.+.|.. ++++.+..+.. ....++.++. .+
T Consensus 279 ------~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~-~~~~~~~~p~g---g~fl~~~l~~~~~~ 348 (405)
T PRK06207 279 ------IVSLRAAGYSQAVLRTWFSEPDGWMKDRIARHQAIRDDLLRVLRG-VEGVFVRAPQA---GSYLFPRLPRLAVS 348 (405)
T ss_pred ------HhccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhc-CCCceecCCCe---eEEEEEeCcccCCC
Confidence 111123333444454555422234566777778888888888876 56766553322 1233344442 24
Q ss_pred hhHHHHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 303 GESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 303 ~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
..++...| +||.+.+|..|... ..+++||+++. +.++++..+++|.+
T Consensus 349 ~~~~~~~l~~~~gV~v~pG~~F~~~-----------------~~~~~Ris~~~--~~~~l~~al~rl~~ 398 (405)
T PRK06207 349 LHDFVKILRLQAGVIVTPGTEFSPH-----------------TADSIRLNFSQ--DHAAAVAAAERIAQ 398 (405)
T ss_pred HHHHHHHHHHhcCEEEeCchHhCCC-----------------CCCeEEEEecC--CHHHHHHHHHHHHH
Confidence 56676666 59999999876431 13799999985 67889998888885
|
|
| >PRK04870 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.1e-22 Score=257.85 Aligned_cols=312 Identities=13% Similarity=0.093 Sum_probs=231.9
Q ss_pred CCCCCCC-CCCHHHHHHHHHHHhh--hcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCC-CcEEEeCCHHHHHHHHHH
Q psy15216 1 MDYSATT-PIDPRVVDKMIPYLRV--QFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADP-REIIWTSGATESNNLAIK 76 (2602)
Q Consensus 1 Ld~a~~~-~~p~~v~~a~~~~l~~--~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~-~~Iv~t~g~T~al~~~~~ 76 (2602)
||.+.+. ++|+.+++++.+.+.. ...+|.. ...++|+++|+++|.++ ++|++|+|+++++.+++.
T Consensus 31 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~-----------~~~~lr~~ia~~~~~~~~~~I~~t~G~~~~i~~~~~ 99 (356)
T PRK04870 31 LDAMENPYRLPAELRAELGERLAEVALNRYPDP-----------RAAALKAALRAAMGVPAGADVLLGNGSDELIQLLAL 99 (356)
T ss_pred CcCCCCCCCCCHHHHHHHHHHhhccccccCCCC-----------CHHHHHHHHHHHhCcCCCCcEEEcCCHHHHHHHHHH
Confidence 3444454 6889999999988753 2223322 24678999999999865 489999999999999999
Q ss_pred hcccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhcc-CCceEEEEecccCcccccccH
Q psy15216 77 GAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKIC-SDTILVSVMLVNNEIGVIQPI 155 (2602)
Q Consensus 77 ~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~-~~tklv~i~~~~npTG~~~~l 155 (2602)
++. ++||+|+++.|.|+.+...++.. |++++.++.++++.+|++++++++. .+++++++++|+||||.++|.
T Consensus 100 ~~~----~~gd~vlv~~P~y~~~~~~~~~~---g~~~~~i~~~~~~~~d~~~l~~~~~~~~~~~v~l~~p~NPtG~~~~~ 172 (356)
T PRK04870 100 ACA----KPGATVLAPEPGFVMYRMSAKLA---GLEFVGVPLTADFTLDLPAMLAAIAEHRPALVFLAYPNNPTGNLFDD 172 (356)
T ss_pred Hhc----CCCCEEEECCCCHHHHHHHHHHc---CCEEEEecCCCCCCCCHHHHHHHhhcCCCCEEEEcCCCCCCCCCCCH
Confidence 887 79999999999998876665554 9999999998788899999999996 589999999999999999999
Q ss_pred HHHHHHHHhcCCEEEEecccccccc-c--ccCCCCCccEEEeccccccCCCC--cEEEEEecCCCCcccceecCCCcccc
Q psy15216 156 LEIGELCRSKGVIFHCDAAQAVGKI-D--INIQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYG 230 (2602)
Q Consensus 156 ~~I~~la~~~g~~livD~a~a~g~~-~--~dl~~~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~ 230 (2602)
+++.++++..++++|+|+++..-.. . ..+...+..+++.|++| +|++| +||+++++++++.+.....
T Consensus 173 ~~~~~i~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~vi~~~S~SK-~~~~GlRiG~~i~~~~~i~~~~~~~~------- 244 (356)
T PRK04870 173 ADVERIIEAAPGLVVVDEAYQPFAGDSWLPRLARFPNLLVMRTVSK-LGLAGLRLGYLAGHPAWIAELDKVRP------- 244 (356)
T ss_pred HHHHHHHHHCCCEEEEECCchhhcCcchHHHHhhCCCEEEEecchh-hhhHHHhhhhhhCCHHHHHHHHHccC-------
Confidence 9988888776889999999752111 1 11222333578889999 88888 9999999877776654331
Q ss_pred ccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcccChhHHHHHh
Q psy15216 231 LRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI 310 (2602)
Q Consensus 231 ~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L 310 (2602)
.++.+.++..++..+++. ...+++..++++++++++.+.|.. .+++.+..+ . .. ++++...+...+...|
T Consensus 245 --~~~~~~~~q~~a~~~l~~-~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~-~---~~--~~~~~~~~~~~~~~~l 314 (356)
T PRK04870 245 --PYNVNVLTQATALFALEH-VDVLDAQAAQLRAERTRLAAALAA-LPGVTVFPS-A---AN--FILVRVPDAAAVFDGL 314 (356)
T ss_pred --CCcCCHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHHHHh-CCCcEECCC-C---Ce--EEEEECCCHHHHHHHH
Confidence 123444454445555552 234677788888999999999977 678765422 1 12 3333322556666666
Q ss_pred --CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 311 --KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 311 --~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
+||.++++..+.+. ..+++||+++ +.+++++|+++|++
T Consensus 315 ~~~gI~v~~~~~f~~~-----------------~~~~iRis~~---~~~~~~~l~~al~~ 354 (356)
T PRK04870 315 KTRGVLVKNLSGMHPL-----------------LANCLRVTVG---TPEENAQFLAALKA 354 (356)
T ss_pred HHCCEEEEECCCCCCC-----------------CCCeEEEeCC---CHHHHHHHHHHHHH
Confidence 79999987665321 1379999998 89999999999985
|
|
| >PRK05387 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.2e-22 Score=257.96 Aligned_cols=310 Identities=15% Similarity=0.127 Sum_probs=227.7
Q ss_pred CCCCCC-CCCHHHHHHHHHHHhh-hcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcc
Q psy15216 2 DYSATT-PIDPRVVDKMIPYLRV-QFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAA 79 (2602)
Q Consensus 2 d~a~~~-~~p~~v~~a~~~~l~~-~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~ 79 (2602)
+.+... ++|+.+.+++.+.+.. ...+|.. ...++|+++|+++++++++|++|+|+++++.++++++.
T Consensus 30 ~~~~~~~~~~~~~~~a~~~~~~~~~~~y~~~-----------~~~~lr~aia~~~~~~~~~I~it~G~~~al~~~~~~l~ 98 (353)
T PRK05387 30 NTNENPYPPSPKVLEAIRAALGDDLRLYPDP-----------NADALRQAIAAYYGLDPEQVFVGNGSDEVLAHAFLAFF 98 (353)
T ss_pred cCCCCCCCCCHHHHHHHHHHhhhhhhcCCCC-----------cHHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHhc
Confidence 344444 4578889999887653 2233332 13689999999999999999999999999999999987
Q ss_pred cccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHH
Q psy15216 80 HFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIG 159 (2602)
Q Consensus 80 ~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~ 159 (2602)
++||+|++++|.|+.+....+.. |++++.++.++++.+|++++++ +++++++++||||||.++|.+++.
T Consensus 99 ----~~gd~vlv~~P~y~~~~~~~~~~---g~~~~~v~~~~~~~~d~~~l~~----~~~~v~~~~P~NPtG~~~~~~~~~ 167 (353)
T PRK05387 99 ----NHDRPLLFPDITYSFYPVYAGLY---GIPYEEIPLDDDFSIDVEDYLR----PNGGIIFPNPNAPTGIALPLAEIE 167 (353)
T ss_pred ----CCCCEEEEeCCCHHHHHHHHHHc---CCEEEEeecCCCCCCCHHHHHh----cCCEEEEeCCCCCCCCCCCHHHHH
Confidence 89999999999998876665554 9999999988788899999863 467899999999999999999999
Q ss_pred HHHHhc-CCEEEEeccccccc--ccccC-CCCCccEEEeccccccCCCC--cEEEEEecCCCCcccceecCCCccccccc
Q psy15216 160 ELCRSK-GVIFHCDAAQAVGK--IDINI-QNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRS 233 (2602)
Q Consensus 160 ~la~~~-g~~livD~a~a~g~--~~~dl-~~~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~ 233 (2602)
++++.+ ++++|+|++|..-. ....+ ...+..+++.|++|.+|++| +||+++++++++.+..... .+..
T Consensus 168 ~l~~~~~~~~livDe~y~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~~~~~~~~~~~l~~~~~------~~~~ 241 (353)
T PRK05387 168 RILAANPDSVVVIDEAYVDFGGESAIPLIDRYPNLLVVQTFSKSRSLAGLRVGFAIGHPELIEALNRVKN------SFNS 241 (353)
T ss_pred HHHHhCCCcEEEEeCcccccCCcchHHHHhhCCCEEEEEehhHhhcchhhhceeeecCHHHHHHHHHhhc------cCCC
Confidence 999875 99999999975211 11111 12234688899999888887 8999998877766654321 1123
Q ss_pred cCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcccChhHHHHHh--C
Q psy15216 234 GTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI--K 311 (2602)
Q Consensus 234 gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~ 311 (2602)
++.+.+...++..++.. ..+.++.++++.++++++.+.|++ . ++.+.++ . ..+.++.++..+..++.+.| +
T Consensus 242 ~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~-~---~~~~~~~~~~~~~~~~~~~l~~~ 314 (353)
T PRK05387 242 YPLDRLAQAGAIAAIED-EAYFEETRAKVIATRERLVEELEA-L-GFEVLPS-K---ANFVFARHPSHDAAELAAKLRER 314 (353)
T ss_pred CCcCHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHH-C-CCeECCC-c---CcEEEEECCCCCHHHHHHHHHHC
Confidence 35566666666666652 344677788888899999999987 3 6665422 1 12333444444566777776 7
Q ss_pred CeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 312 DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 312 gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
||.++. +..+ ...+++|++++ +.+++++++++|++
T Consensus 315 gi~v~~---~~~~----------------~~~~~iRis~~---~~~~~~~~~~~L~~ 349 (353)
T PRK05387 315 GIIVRH---FNKP----------------RIDQFLRITIG---TDEEMEALVDALKE 349 (353)
T ss_pred CEEEEE---CCCC----------------CCCCeEEEEeC---CHHHHHHHHHHHHH
Confidence 999863 2111 01378999998 77999999999985
|
|
| >PRK06108 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.2e-22 Score=259.15 Aligned_cols=318 Identities=16% Similarity=0.132 Sum_probs=229.3
Q ss_pred CCCHHHHHHHHHHHhhhc-CCCCCCCcchhhhHHHHHHHHHHHHHHHhC--CCCCcEEEeCCHHHHHHHHHHhccccccc
Q psy15216 8 PIDPRVVDKMIPYLRVQF-GNPASRNHIYGWTAEKAIEKARNEVAQLIY--ADPREIIWTSGATESNNLAIKGAAHFYKK 84 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~-~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g--~~~~~Iv~t~g~T~al~~~~~~l~~~~~~ 84 (2602)
++|+.+.+++.+.+.... .++ .......+.+.+.+++++++| +++++|++|+|+++|+..++.++. +
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~Y~------~~~G~~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~----~ 106 (382)
T PRK06108 37 PTPDFIRDAAAAALADGETFYT------HNLGIPELREALARYVSRLHGVATPPERIAVTSSGVQALMLAAQALV----G 106 (382)
T ss_pred CCCHHHHHHHHHHHhcCCCCCC------CCCCCHHHHHHHHHHHHHHhCCCcCcceEEEeCChHHHHHHHHHHhc----C
Confidence 568888999888775421 122 111223344444445555557 678899999999999999999887 7
Q ss_pred CCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCC---CCccChHHHHhhccCCceEEEEecccCccccccc---HHHH
Q psy15216 85 RGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN---NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEI 158 (2602)
Q Consensus 85 ~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~---~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~---l~~I 158 (2602)
+||.|++++|.|+.+...++.+ |++++.++.+. ++.+|++++++.++++++++++++|+||||.++| +++|
T Consensus 107 ~gd~vl~~~p~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~p~NPtG~~~~~~~~~~l 183 (382)
T PRK06108 107 PGDEVVAVTPLWPNLVAAPKIL---GARVVCVPLDFGGGGWTLDLDRLLAAITPRTRALFINSPNNPTGWTASRDDLRAI 183 (382)
T ss_pred CCCEEEEeCCCccchHHHHHHC---CCEEEEeeCCCCCCCccCCHHHHHHhcCccceEEEEECCCCCCCcccCHHHHHHH
Confidence 9999999999999987766554 99999999864 3468999999999989999999999999999997 5678
Q ss_pred HHHHHhcCCEEEEeccccccccc--------ccCCC-CCccEEEeccccccCCCC--cEEEEEecCCCCcccceecCCCc
Q psy15216 159 GELCRSKGVIFHCDAAQAVGKID--------INIQN-YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGH 227 (2602)
Q Consensus 159 ~~la~~~g~~livD~a~a~g~~~--------~dl~~-~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g~~~ 227 (2602)
.++|+++|+++|+|++|+..... .++.. .+..+++.|+||.+|++| +||+++++++++.+.....
T Consensus 184 ~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~~~~~~~~~~~~~~~~~---- 259 (382)
T PRK06108 184 LAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIAEPDDRIIFVNSFSKNWAMTGWRLGWLVAPPALGQVLEKLIE---- 259 (382)
T ss_pred HHHHHHCCcEEEEehhhhhhccCCCCCCCCHhhcCCCcCCEEEEeechhhccCcccceeeeeCCHHHHHHHHHHHH----
Confidence 88899999999999997643211 12222 124588889999888777 8999999877776654321
Q ss_pred cccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc-cChhHH
Q psy15216 228 EYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGESL 306 (2602)
Q Consensus 228 ~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~-~~~~~~ 306 (2602)
+....++.....++..+|.....++++.+++++++++++.+.|.+ .+++.+..+.. ....++.++. .+..++
T Consensus 260 ---~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~p~~---g~~~~~~l~~~~~~~~~ 332 (382)
T PRK06108 260 ---YNTSCVAQFVQRAAVAALDEGEDFVAELVARLRRSRDHLVDALRA-LPGVEVAKPDG---AMYAFFRIPGVTDSLAL 332 (382)
T ss_pred ---hcccCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHh-CCCCcccCCCe---eEEEEEeCCCCCCHHHH
Confidence 112234444455555666533345678888899999999999977 56777654321 1222333433 245567
Q ss_pred HHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 307 LMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 307 ~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
...| +||.+.+|..|.+. ..+++|+|++. ++++++.++++|++
T Consensus 333 ~~~ll~~~gV~v~pg~~f~~~-----------------~~~~~Ris~~~--~~~~l~~~l~~l~~ 378 (382)
T PRK06108 333 AKRLVDEAGLGLAPGTAFGPG-----------------GEGFLRWCFAR--DPARLDEAVERLRR 378 (382)
T ss_pred HHHHHHhCCEEEeCchhhCCC-----------------CCCEEEEEecC--CHHHHHHHHHHHHH
Confidence 6665 59999988766421 13799999997 88999999999985
|
|
| >cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.4e-22 Score=259.82 Aligned_cols=301 Identities=16% Similarity=0.147 Sum_probs=216.3
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccC--CCEEEEcCCCCcccHHHHHHH-HhCCcEEE
Q psy15216 38 TAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKR--GKHIITVQTEHKSVLDSIRKL-ENDGFRVT 114 (2602)
Q Consensus 38 ~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~--gd~Vlv~~~~~~s~~~~~~~~-~~~G~~v~ 114 (2602)
...+..+++++++++++|++.++++++++++.+.+.++.++. +.+ ||+|+++++.|+++...+..+ ++.|++++
T Consensus 61 g~~~~~~~~~~~la~~~g~~~~~v~~~~~g~~~~~~~~~~~~---~~~~~gd~Vl~~~~~h~~~~~~~~~~~~~~g~~~~ 137 (398)
T cd00613 61 GRLQALFELQTMLCELTGMDVANASLQDEATAAAEAAGLAAI---RAYHKRNKVLVPDSAHPTNPAVARTRGEPLGIEVV 137 (398)
T ss_pred hHHHHHHHHHHHHHHHHCCCccceeccCchHHHHHHHHHHHH---hcccCCCEEEEcCccCcchHHHHHHhcccCCcEEE
Confidence 445788999999999999987788778866655554444443 244 999999999999999998877 34569999
Q ss_pred EeccCCCCccChHHHHhhccCCceEEEEecccCcccccccH-HHHHHHHHhcCCEEEEecccccccccccCCCCCccEEE
Q psy15216 115 YLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPI-LEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMS 193 (2602)
Q Consensus 115 ~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l-~~I~~la~~~g~~livD~a~a~g~~~~dl~~~~~D~~~ 193 (2602)
.++.++++.+|+++++++++++|++|++++++ ++|.+.|+ ++|+++|++||+++|+|++|+.+..+.+...+++|+++
T Consensus 138 ~v~~~~~~~~d~~~l~~~i~~~t~~viv~~~~-~~G~~~~~l~~i~~la~~~g~~livD~~~~~~~~~~~~~~~~~d~~~ 216 (398)
T cd00613 138 EVPSDEGGTVDLEALKEEVSEEVAALMVQYPN-TLGVFEDLIKEIADIAHSAGALVYVDGDNLNLTGLKPPGEYGADIVV 216 (398)
T ss_pred EeccCCCCCcCHHHHHHhcCCCeEEEEEECCC-CCceecchHHHHHHHHHhcCCEEEEEeccccccCCCChHHcCCCEEE
Confidence 99987777899999999999999999999985 89999985 99999999999999999999877666666677899999
Q ss_pred eccccccCC-----CCcEEEEEecCCCCcccceecCCCc-----------------cccccccCcch-----hHHHHHHH
Q psy15216 194 FSAHKIYGP-----KGIGALYIRRNPRTRIEAQIHGGGH-----------------EYGLRSGTLAT-----HQIVGMGE 246 (2602)
Q Consensus 194 ~S~~K~~Gp-----~G~G~l~~~~~~~~~l~~~~~g~~~-----------------~~~~~~gt~~~-----~~~~al~~ 246 (2602)
+|+||+++| +|+|++++++++.+.+.+...+|.. ..+++.+++++ ....++.+
T Consensus 217 ~s~~K~~~p~g~Ggp~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~~~~~~~~~~~~~~~a~~ 296 (398)
T cd00613 217 GNLQKTGVPHGGGGPGAGFFAVKKELVRFLPGRLVGVTKDAEGNRAFRLALQTREQHIRREKATSNICTGQALLALMAAM 296 (398)
T ss_pred eeccccCCCCCCCCCceeEEEEhhhhHhhCCCCeeccccccCCCcceEEecccchhhcccccccccceecHHHHHHHHHH
Confidence 999997644 5589999998887776554333321 01122333332 22222323
Q ss_pred HHH-HHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc---cChhHHHHHh--CCeEEccccc
Q psy15216 247 AFR-LARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF---IEGESLLMAI--KDIAVSSGSA 320 (2602)
Q Consensus 247 al~-~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~L--~gI~v~~g~~ 320 (2602)
++. +...+++++.+++++++++++++|.+ +++... +.... ...+.+.++. .+..++...| ++|.+....
T Consensus 297 ~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~-~~~~~~--~~~~~-~~~v~~~~~~~~~~~~~~~~~~L~~~gi~~~~~~- 371 (398)
T cd00613 297 YIVYLGPEGLKEIAERAHLNANYLAKRLKE-VGGVLP--FNGPF-FHEFVLRLPPLYGIRAEDLAKALIDGGFHAPTMY- 371 (398)
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHHHHHHHh-cCCccc--CCCCe-eEEEEEEcCCcchHHHHHHHHhhhhcCccccccc-
Confidence 333 33456788999999999999999987 444331 11111 1223344442 2345666666 455442110
Q ss_pred CCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHH
Q psy15216 321 CTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLL 366 (2602)
Q Consensus 321 ~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L 366 (2602)
+ ...+.||+|++.|+|++|||+++++|
T Consensus 372 --~-----------------~~~~~lRis~~~~~t~edid~~~~~L 398 (398)
T cd00613 372 --L-----------------PVDGTLMIEPTETETKEELDALLEAL 398 (398)
T ss_pred --c-----------------CCCCeEEEEcCCCCCHHHHHHHHHhC
Confidence 0 01368999999999999999999875
|
This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life. |
| >PRK08056 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.5e-22 Score=255.74 Aligned_cols=305 Identities=15% Similarity=0.126 Sum_probs=218.3
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCC
Q psy15216 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK 87 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd 87 (2602)
++|+.+++++.+.+.....+|.. ...++|+++|+++++++++|++|+|+++++.+++.++. +|+
T Consensus 33 ~~p~~~~~a~~~~~~~~~~y~~~-----------~~~~lr~~ia~~~~~~~~~i~it~Ga~~~l~~~~~~l~-----~g~ 96 (356)
T PRK08056 33 GMPVSLKRAIIDNLDCAERYPDV-----------EYRHLHQALARHHQVPASWILAGNGETESIFAVVSGLK-----PRR 96 (356)
T ss_pred CCCHHHHHHHHHHHHhcccCcCc-----------cHHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHHHhC-----CCC
Confidence 68889999998877653333322 25789999999999999999999999999999998764 676
Q ss_pred EEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCC--CccChHHHHhhccCCceEEEEecccCccccccc---HHHHHHHH
Q psy15216 88 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN--GLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIGELC 162 (2602)
Q Consensus 88 ~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~--~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~---l~~I~~la 162 (2602)
+++..|.|+.+...++. .|++++.++.+++ +.+| +++.+.+.++++++++++||||||.+++ +++|+++|
T Consensus 97 -viv~~P~y~~~~~~~~~---~g~~~~~v~~~~~~~~~~~-~~~~~~~~~~~k~v~l~~p~NPTG~~~~~~~~~~i~~~a 171 (356)
T PRK08056 97 -AMIVTPGFAEYRRALQQ---VGCEIRRYSLREADGWQLT-DAILEALTPDLDCLFLCTPNNPTGLLPERQLLQAIAERC 171 (356)
T ss_pred -EEEeCCCcHHHHHHHHH---cCCeEEEEecccccCCCcc-HHHHHhccCCCCEEEEeCCcCCCCCCCCHHHHHHHHHHH
Confidence 56667777776655544 4999999988643 3455 4566677889999999999999999999 77788999
Q ss_pred HhcCCEEEEeccccccc----ccc-cCCCCCccEEEeccccccCCCC--cEEEEEe-cCCCCcccceecCCCcccccccc
Q psy15216 163 RSKGVIFHCDAAQAVGK----IDI-NIQNYKVDLMSFSAHKIYGPKG--IGALYIR-RNPRTRIEAQIHGGGHEYGLRSG 234 (2602)
Q Consensus 163 ~~~g~~livD~a~a~g~----~~~-dl~~~~~D~~~~S~~K~~Gp~G--~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~g 234 (2602)
+++++++|+|+++..-. ..+ .+...+..+++.|+||++|++| +||++++ +++++.+.... ..+
T Consensus 172 ~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~~~~~~l~~~~---------~~~ 242 (356)
T PRK08056 172 KSLNIALILDEAFIDFIPDETGFIPQLADNPHLWVLRSLTKFYAIPGLRLGYLVNSDDAAVARMRRQQ---------MPW 242 (356)
T ss_pred HhcCCEEEEecchhccCCcchHHHHHhccCCCEEEEEechhhccCcchhheeeecCCHHHHHHHHHhC---------CCC
Confidence 99999999999974211 111 1233445688899999999888 8999985 34444444221 123
Q ss_pred CcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcccChhHHHHHh--CC
Q psy15216 235 TLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI--KD 312 (2602)
Q Consensus 235 t~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~g 312 (2602)
+++..+..++..+++ ...+..+.++++++.++++.+.|.. ++++.+..+ . ....++.++ .+..++...| +|
T Consensus 243 ~~~~~~~~~a~~~l~-~~~~~~~~~~~~~~~r~~l~~~L~~-~~~~~~~~~-~---~~~~~~~~~-~~~~~~~~~l~~~g 315 (356)
T PRK08056 243 SINAFAALAGEVILQ-DRAYQQATWQWLAEEGARFYQALCA-LPLLTVWPG-R---ANYLFLRCE-RPDIDLQRALLTQR 315 (356)
T ss_pred chhHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHHHhc-CCCcEEcCC-C---CcEEEEEcC-CChHHHHHHHHHCC
Confidence 444445554545553 1234566678888889999999976 677766532 1 122233333 2345666666 89
Q ss_pred eEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 313 IAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 313 I~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
|.++++..+... ..++|||+++ +.+++++++++|++.
T Consensus 316 I~v~~~~~f~~~-----------------~~~~iRis~~---~~~~~~~l~~~l~~~ 352 (356)
T PRK08056 316 ILIRSCANYPGL-----------------DSRYYRVAIR---SAAENERLLAALRNV 352 (356)
T ss_pred eEEEECCCCCCC-----------------CCCEEEEEEc---CHHHHHHHHHHHHHH
Confidence 999998876321 1379999998 789999999999853
|
|
| >TIGR01366 serC_3 phosphoserine aminotransferase, putative | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.2e-22 Score=255.02 Aligned_cols=323 Identities=15% Similarity=0.120 Sum_probs=232.0
Q ss_pred CCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCC-CcEEEe-CCHHHHHHHHHHhccccccc
Q psy15216 7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADP-REIIWT-SGATESNNLAIKGAAHFYKK 84 (2602)
Q Consensus 7 ~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~-~~Iv~t-~g~T~al~~~~~~l~~~~~~ 84 (2602)
++.|+.+++++......... ....+....+.++++|+.+++++|+++ .+|+|+ +|+|.+++.++.++. .
T Consensus 12 ~~~~~~v~~a~~~~~~~~~~-----~~hr~~~f~~~~~~~r~~l~~l~~~~~~~~v~f~~gs~T~a~~~~~~~l~----~ 82 (361)
T TIGR01366 12 SKVRLEQLQALTTTAASLFG-----TSHRQAPVKNLVGRVREGLAELFSLPDGYEVILGNGGATAFWDAATFGLI----E 82 (361)
T ss_pred cCCCHHHHHHHHhcCccccc-----cCcCChHHHHHHHHHHHHHHHHhCCCCCceEEEECCchhHHHHHHHHhcc----c
Confidence 35667777776543111110 112345667899999999999999954 478886 669999999999986 2
Q ss_pred CCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHh
Q psy15216 85 RGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRS 164 (2602)
Q Consensus 85 ~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~ 164 (2602)
++.+++...+|.+....+......+.++..++.+++..++. .+.+++++|+++|.+|.||.++|+++| +|+
T Consensus 83 -~~~l~i~~G~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~lV~~~h~et~tG~~~pi~~I---~~~ 153 (361)
T TIGR01366 83 -KKSLHLSFGEFSSKFAKAVKLAPWLGEPIIVTADPGSAPEP-----QADPGVDVIAWAHNETSTGVAVPVRRP---EGS 153 (361)
T ss_pred -ccccEEecCHHHHHHHHHHHhhhccCCceEEecCCCCCCCC-----ccCCCCCEEEEcccCCccceecccccc---ccc
Confidence 24445555666653322222111223677777665443433 456899999999999999999999988 589
Q ss_pred cCCEEEEecccccccccccCCCCCccEEEeccccccCC-CCcEEEEEecCCCCcccceecCCCc-----------cc---
Q psy15216 165 KGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGP-KGIGALYIRRNPRTRIEAQIHGGGH-----------EY--- 229 (2602)
Q Consensus 165 ~g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K~~Gp-~G~G~l~~~~~~~~~l~~~~~g~~~-----------~~--- 229 (2602)
+|+++++|++|++|+.++|+++ +|++++|.||++|+ +|++++++++++.+++.+...++.. +.
T Consensus 154 ~g~~~iVDavqs~g~~~idv~~--~D~~~~s~~K~lg~~~Gl~~~~~s~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~ 231 (361)
T TIGR01366 154 DDALVVIDATSGAGGLPVDIAE--TDVYYFAPQKNFASDGGLWLAIMSPAALERIEAIAASGRWVPEFLSLPTAVDNSLK 231 (361)
T ss_pred CCCeEEEEcCccccCCCCCHHH--CCEEEEEchhhcCCCCceEEEEECHHHHhhhhcccCCCCCCchhhhHHHHHhcccc
Confidence 9999999999999999999985 79999999997765 4788889999888777655443211 01
Q ss_pred cccccCcchhHHHHHHHHHHHHH-H-hHHHHHHHHHHHHHHHHHHHhhccCceEEeCC-CCCCCCceEEEEEc-ccChhH
Q psy15216 230 GLRSGTLATHQIVGMGEAFRLAR-I-EMKEELKRILFLQKRLYNGLMESIEEIYINGD-MNNRIPHNLNISFN-FIEGES 305 (2602)
Q Consensus 230 ~~~~gt~~~~~~~al~~al~~~~-~-~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~-~~~~~~~~~~~~~~-~~~~~~ 305 (2602)
....+||++..++++.+++++.. . +++.+.++++++++++++.+.+ .++++++.. +..+.+....+.|+ +.+..+
T Consensus 232 ~~t~~tp~i~~i~~l~~al~~l~~~gg~e~~~~r~~~l~~~l~~~l~~-~~~~~~~~~~~~~~s~~v~~v~~~~g~~~~~ 310 (361)
T TIGR01366 232 NQTYNTPAIATLALLAEQIDWMNGNGGLDWAVARTADSSSRLYSWAQE-RPYATPFVTDPGKRSQVVGTIDFVDDIDAAT 310 (361)
T ss_pred CCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHh-CCCcccCCCChhhcccceEEEECCCccCHHH
Confidence 12356788888889999999665 4 4899999999999999999988 555666532 22234455566665 246667
Q ss_pred HHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 306 LLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 306 ~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
+...| +||.+.++.. .++ .+.+|||++.|+|.+||++++++|++.
T Consensus 311 v~~~L~~~gI~i~~~~~-------------~l~------~~~vRis~~~~~t~~di~~l~~al~~~ 357 (361)
T TIGR01366 311 VAKILRANGIVDTEPYR-------------KLG------RNQLRVAMFPAIDPDDVEALTECVDWV 357 (361)
T ss_pred HHHHHHHCCCeeccCcc-------------ccC------CCcEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 76666 7888754321 111 267999999999999999999999963
|
This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria. |
| >TIGR01141 hisC histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.2e-22 Score=256.13 Aligned_cols=317 Identities=17% Similarity=0.200 Sum_probs=234.1
Q ss_pred eceeeecc--CCCCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHH
Q psy15216 1392 PYTNIVFK--DATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNL 1469 (2602)
Q Consensus 1392 P~~~v~L~--~~~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~ 1469 (2602)
|...+.+. .+..+.++.+++++.++......+++. ...++|+.+++++++++++|++|+|++++++.
T Consensus 18 ~~~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~y~~~-----------~~~~lr~~ia~~~~~~~~~i~~~~G~~~~l~~ 86 (346)
T TIGR01141 18 GKEVIKLNSNENPFGPPPKAKEALRAEADKLHRYPDP-----------DPAELKQALADYYGVDPEQILLGNGSDEIIEL 86 (346)
T ss_pred CCceEEccCCCCCCCCCHHHHHHHHHhHHHhhcCCCC-----------CHHHHHHHHHHHhCcChHHEEEcCCHHHHHHH
Confidence 34455554 335677889999999887544334332 12579999999999988899999999999999
Q ss_pred HHHhhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccCCceEEEEecccccccccc
Q psy15216 1470 AIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQ 1549 (2602)
Q Consensus 1470 al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~ 1549 (2602)
++.++. ++||+|++++|.|+.+...++ ..|++++.++.+.++.+|++++++++++++++|++++|+||||.++
T Consensus 87 ~~~~l~----~~gd~v~~~~p~y~~~~~~~~---~~g~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NptG~~~ 159 (346)
T TIGR01141 87 LIRAFL----EPGDAVLVPPPTYSMYEISAK---IHGAEVVKVPLDEDGQLDLEDILVAIDDKPKLVFLCSPNNPTGNLL 159 (346)
T ss_pred HHHHhc----CCCCEEEEcCCCHHHHHHHHH---HcCCeEEEeccCCCCCCCHHHHHHhcCCCCCEEEEeCCCCCCCCCC
Confidence 988886 799999999999987655444 3499999999988888999999999999999999999999999999
Q ss_pred ChHHHHHHhhhc--CCEEEEecccccCc---ccccC-CCCCccEEEEccccccCCCc--eEEEEEecCCCCccccccccC
Q psy15216 1550 PILEIGELCRSK--GVIFHCDAAQAVGK---IDINI-QNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGG 1621 (2602)
Q Consensus 1550 ~l~~I~~ia~~~--gi~vivD~a~~~g~---~~~~l-~~~~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~~g~ 1621 (2602)
|++++.++|+.+ |+++++|++|+.-. .+.+. ...+..+++.|+||++|++| +||+++++++++.+.+...
T Consensus 160 ~~~~~~~l~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~-- 237 (346)
T TIGR01141 160 SRSDIEAVLERTPEDALVVVDEAYGEFSGEPSTLPLLAEYPNLIVLRTLSKAFGLAGLRIGYAIANAEIIDALNKVRA-- 237 (346)
T ss_pred CHHHHHHHHHhCCCCcEEEEECchhhhcCCccHHHHHhhCCCEEEEehhhHhhhchhhhceeeecCHHHHHHHHhccC--
Confidence 999999998876 99999999986211 11111 11223477889999887777 7999998877666654321
Q ss_pred CccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecCCcHH
Q psy15216 1622 GHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGES 1701 (2602)
Q Consensus 1622 ~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~ 1701 (2602)
..+.+.+.+.++..+++... .+.+.+++++++++++++.|.+ .+++.+.++ . .....+.++. +..+
T Consensus 238 -------~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~-~---g~~~~~~~~~-~~~~ 303 (346)
T TIGR01141 238 -------PFNLSRLAQAAAIAALRDDD-FIEKTVEEINAERERLYDGLKK-LPGLEVYPS-D---ANFVLIRFPR-DADA 303 (346)
T ss_pred -------CCCCCHHHHHHHHHHhCCHH-HHHHHHHHHHHHHHHHHHHHHh-cCCCEECCC-c---CCEEEEecCC-CHHH
Confidence 12334445555545555322 4677888889999999999987 567775432 1 1223333333 5566
Q ss_pred HHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHH
Q psy15216 1702 LLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK 1763 (2602)
Q Consensus 1702 ~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~ 1763 (2602)
+...| +||.+.+|..|... .+++|+|++ +.+|+++++++|+
T Consensus 304 ~~~~L~~~gI~v~~g~~f~~~------------------~~~iRls~~---~~~~i~~~~~~l~ 346 (346)
T TIGR01141 304 LFEALLEKGIIVRDLNSYPGL------------------PNCLRITVG---TREENDRFLAALR 346 (346)
T ss_pred HHHHHHHCCeEEEeCCCcCCC------------------CCeEEEecC---CHHHHHHHHHHhC
Confidence 76666 89999988765320 278999987 7899999998874
|
Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme. |
| >TIGR01366 serC_3 phosphoserine aminotransferase, putative | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.3e-22 Score=253.86 Aligned_cols=324 Identities=15% Similarity=0.118 Sum_probs=234.1
Q ss_pred CCCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCC-CcEEEe-CCHHHHHHHHHHhhhhhh
Q psy15216 1401 ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADP-REIIWT-SGATESNNLAIKGAAHFY 1478 (2602)
Q Consensus 1401 ~~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~-~~iv~t-~gaT~al~~al~~l~~~~ 1478 (2602)
...+.++++++++.+....... .++.+..+.+.++++|+.+++++++++ .+|+|+ +|+|.+++.++.++.
T Consensus 10 GP~~~~~~v~~a~~~~~~~~~~-----~~hr~~~f~~~~~~~r~~l~~l~~~~~~~~v~f~~gs~T~a~~~~~~~l~--- 81 (361)
T TIGR01366 10 GPSKVRLEQLQALTTTAASLFG-----TSHRQAPVKNLVGRVREGLAELFSLPDGYEVILGNGGATAFWDAATFGLI--- 81 (361)
T ss_pred CCcCCCHHHHHHHHhcCccccc-----cCcCChHHHHHHHHHHHHHHHHhCCCCCceEEEECCchhHHHHHHHHhcc---
Confidence 3457788888887643211111 123356778899999999999999854 478886 669999999999986
Q ss_pred ccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccCCceEEEEeccccccccccChHHHHHHh
Q psy15216 1479 KKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELC 1558 (2602)
Q Consensus 1479 ~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~~ia 1558 (2602)
. ++.+++...+|.+...........+.++..++.+++..++. .+.++|++|+++|.+|.||.++|+++| +
T Consensus 82 -~-~~~l~i~~G~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~lV~~~h~et~tG~~~pi~~I---~ 151 (361)
T TIGR01366 82 -E-KKSLHLSFGEFSSKFAKAVKLAPWLGEPIIVTADPGSAPEP-----QADPGVDVIAWAHNETSTGVAVPVRRP---E 151 (361)
T ss_pred -c-ccccEEecCHHHHHHHHHHHhhhccCCceEEecCCCCCCCC-----ccCCCCCEEEEcccCCccceecccccc---c
Confidence 2 24455555666654333322211123677777665443433 467899999999999999999999988 5
Q ss_pred hhcCCEEEEecccccCcccccCCCCCccEEEEccccccC-CCceEEEEEecCCCCccccccccCCc-----------cc-
Q psy15216 1559 RSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYG-PKGIGALYIRRNPRTRIEAQIHGGGH-----------EY- 1625 (2602)
Q Consensus 1559 ~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K~~g-p~G~G~l~~~~~~~~~l~~~~~g~~~-----------~~- 1625 (2602)
|++|+++++|++|++|+.++++.+ +|++++|.||++| |+|++++++++++++++.+...++.. +.
T Consensus 152 ~~~g~~~iVDavqs~g~~~idv~~--~D~~~~s~~K~lg~~~Gl~~~~~s~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~ 229 (361)
T TIGR01366 152 GSDDALVVIDATSGAGGLPVDIAE--TDVYYFAPQKNFASDGGLWLAIMSPAALERIEAIAASGRWVPEFLSLPTAVDNS 229 (361)
T ss_pred ccCCCeEEEEcCccccCCCCCHHH--CCEEEEEchhhcCCCCceEEEEECHHHHhhhhcccCCCCCCchhhhHHHHHhcc
Confidence 889999999999999999999985 8999999999666 55788888999877776654433210 11
Q ss_pred --cCCCCCcchhHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCC-CCCCCCceEEEEEec-CCc
Q psy15216 1626 --GLRSGTLATHQIVGMGEAFRLAR-I-EMKEELKRILFLQKRLYNGLMESIEEIYINGD-MNNRIPHNLNISFNF-IEG 1699 (2602)
Q Consensus 1626 --~~~~gt~~~~~~~al~~aL~~~~-~-~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~-~~~~~~~~~~~~~~~-~~~ 1699 (2602)
....+|+++..++++.++++++. . +++.+.++++.+++++++.+.+ .+.+.++.. +...++....+.|+. .+.
T Consensus 230 ~~~~t~~tp~i~~i~~l~~al~~l~~~gg~e~~~~r~~~l~~~l~~~l~~-~~~~~~~~~~~~~~s~~v~~v~~~~g~~~ 308 (361)
T TIGR01366 230 LKNQTYNTPAIATLALLAEQIDWMNGNGGLDWAVARTADSSSRLYSWAQE-RPYATPFVTDPGKRSQVVGTIDFVDDIDA 308 (361)
T ss_pred ccCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHh-CCCcccCCCChhhcccceEEEECCCccCH
Confidence 23357888888889999999665 4 4899999999999999999988 555655532 222344556666652 455
Q ss_pred HHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1700 ESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1700 ~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
.++...| +||.+.++... ++ .+.+|+|++.|+|.+||++++++|++
T Consensus 309 ~~v~~~L~~~gI~i~~~~~~-------------l~------~~~vRis~~~~~t~~di~~l~~al~~ 356 (361)
T TIGR01366 309 ATVAKILRANGIVDTEPYRK-------------LG------RNQLRVAMFPAIDPDDVEALTECVDW 356 (361)
T ss_pred HHHHHHHHHCCCeeccCccc-------------cC------CCcEEEEcCCCCCHHHHHHHHHHHHH
Confidence 6676666 78887543211 11 25799999999999999999999997
|
This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria. |
| >PRK07324 transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.9e-22 Score=257.29 Aligned_cols=288 Identities=17% Similarity=0.178 Sum_probs=214.6
Q ss_pred HHHHHHHHHHHhC-CCCCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCC-
Q psy15216 43 IEKARNEVAQLIY-ADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN- 120 (2602)
Q Consensus 43 ~~~~r~~lA~~~g-~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~- 120 (2602)
..++|+.+|++++ .++++|++|+|+++|+.+++.++. ++||+|+++.|.|+++...++.. |++++.++.+.
T Consensus 64 ~~~lr~~ia~~~~~~~~~~vi~t~G~~~al~~~~~~l~----~~gd~Vl~~~P~y~~~~~~~~~~---g~~v~~v~~~~~ 136 (373)
T PRK07324 64 SPEFKEAVASLYQNVKPENILQTNGATGANFLVLYALV----EPGDHVISVYPTYQQLYDIPESL---GAEVDYWQLKEE 136 (373)
T ss_pred CHHHHHHHHHHhcCCChhhEEEcCChHHHHHHHHHHhC----CCCCEEEEcCCCchhHHHHHHHc---CCEEEEEecccc
Confidence 5678999999885 688899999999999999999987 89999999999998876655544 99999999865
Q ss_pred -CCccChHHHHhhccCCceEEEEecccCccccccc---HHHHHHHHHhcCCEEEEecccccccc---cccCCC-CCccEE
Q psy15216 121 -NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQAVGKI---DINIQN-YKVDLM 192 (2602)
Q Consensus 121 -~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~---l~~I~~la~~~g~~livD~a~a~g~~---~~dl~~-~~~D~~ 192 (2602)
++.+|+++++++++++||++++++|+||||.+++ +++|+++|++||+++++|++++.-.. ...+.. .+..++
T Consensus 137 ~~~~~d~~~l~~~~~~~~kli~i~~p~NPtG~~~~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~~~~~s~~~~~~~~I~ 216 (373)
T PRK07324 137 NGWLPDLDELRRLVRPNTKLICINNANNPTGALMDRAYLEEIVEIARSVDAYVLSDEVYRPLDEDGSTPSIADLYEKGIS 216 (373)
T ss_pred cCCCCCHHHHHHhCCCCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCCChhhccCCEEE
Confidence 3468999999999999999999999999999999 88899999999999999999753211 111111 123477
Q ss_pred EeccccccCCCC--cEEEEEecCCCCcccceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy15216 193 SFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLY 270 (2602)
Q Consensus 193 ~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~ 270 (2602)
+.|++|.+|++| +||+++++++++.+..... ....+.+.++..++..+++.....++..++.++++++.+.
T Consensus 217 ~~s~SK~~~~~G~RiG~i~~~~~li~~~~~~~~-------~~~~~~~~~~q~~a~~~l~~~~~~l~~~~~~~~~~~~~l~ 289 (373)
T PRK07324 217 TNSMSKTYSLPGIRVGWIAANEEVIDILRKYRD-------YTMICAGVFDDMLASLALEHRDAILERNRKIVRTNLAILD 289 (373)
T ss_pred EecchhhcCCccceeEEEecCHHHHHHHHHHhC-------cEEecCChHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence 789999999888 7999998877777664331 1112334444444445665334456667777777888888
Q ss_pred HHHhhccCceEEeCCCCCCCCceEEEEEcc-cChhHHHHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeE
Q psy15216 271 NGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSI 346 (2602)
Q Consensus 271 ~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~i 346 (2602)
+.|.+ .+++....|.. ....++.++. .+..++..+| +||.+.+|..|.. ++++
T Consensus 290 ~~l~~-~~~~~~~~p~g---g~~~~i~~~~~~~~~~~~~~ll~~~gv~v~pg~~F~~-------------------~~~i 346 (373)
T PRK07324 290 EWVAK-EPRVSYVKPKA---VSTSFVKLDVDMPSEDFCLKLLKETGVLLVPGNRFDL-------------------EGHV 346 (373)
T ss_pred HHHhc-CCCceEECCCc---eEEEEEEeCCCCCHHHHHHHHHHhcCEEEECccccCC-------------------CCeE
Confidence 88876 46666554422 1233445543 4566777765 5999999987643 2799
Q ss_pred EEecCCCCCHHHHHHHHHHHHhh
Q psy15216 347 RFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 347 Ris~~~~~t~edid~li~~L~~~ 369 (2602)
||+++. +++.+...+++|++.
T Consensus 347 Ris~~~--~~~~l~~~l~rl~~~ 367 (373)
T PRK07324 347 RIGYCC--DTETLKKGLKKLSEF 367 (373)
T ss_pred EEEecC--CHHHHHHHHHHHHHH
Confidence 999984 678888888888853
|
|
| >PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.3e-22 Score=264.26 Aligned_cols=340 Identities=16% Similarity=0.153 Sum_probs=234.2
Q ss_pred HHHHHHHHhcCCCccccceeeeeceeeeccCCCCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHH
Q psy15216 1370 IEIKNSLEMTGFKAESSGIVMRPYTNIVFKDATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQL 1449 (2602)
Q Consensus 1370 ~~v~~aL~~~g~~~~~~ei~~iP~~~v~L~~~~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~ 1449 (2602)
....+.++..|..+....++ -|.. ...+.|+.+++++.+.+.....|+.. ....++|++++++
T Consensus 135 ~~~~~~~~~~g~~~i~l~~G-~p~~------~~~~~p~~~~~~~~~~~~~~~~Y~~~----------~G~~~lReaia~~ 197 (517)
T PRK13355 135 VDEANRMEAAGTHILKLNIG-NPAP------FGFRTPDEVVYDMAQQLTDTEGYSDS----------KGLFSARKAIMQY 197 (517)
T ss_pred HHHHHHHHHcCCCeEEecCc-CCCc------CCCCCCHHHHHHHHHHhhcCCCCCCC----------cChHHHHHHHHHH
Confidence 33445566667666555554 2321 12355788899988877544334332 2357889999998
Q ss_pred h------CCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCC--CCCcC
Q psy15216 1450 I------YADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLIT 1521 (2602)
Q Consensus 1450 ~------g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~id 1521 (2602)
+ ++++++|++|+|+++++++++.++. ++||+|++++|.|+.+...+..+ |++++.+++++ ++.+|
T Consensus 198 ~~~~~~~~~~~~~I~it~G~~eal~~~~~~l~----~~Gd~Vli~~P~y~~y~~~~~~~---g~~~v~~~~~~~~~~~~d 270 (517)
T PRK13355 198 AQLKGLPNVDVDDIYTGNGVSELINLSMSALL----DDGDEVLIPSPDYPLWTACVNLA---GGTAVHYRCDEQSEWYPD 270 (517)
T ss_pred HHhcCCCCCChhHEEEeCcHHHHHHHHHHHhC----CCCCEEEEcCCCCcCHHHHHHHC---CCEEEEeecCcccCCCCC
Confidence 8 6788999999999999999999887 89999999999999988777665 99999998764 46799
Q ss_pred hhHHHhhccCCceEEEEeccccccccccC---hHHHHHHhhhcCCEEEEeccccc----CcccccCCCCCcc---EEEEc
Q psy15216 1522 LSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQAV----GKIDINIQNYKVD---LMSFS 1591 (2602)
Q Consensus 1522 ~d~l~~~i~~~t~lv~l~~~~n~tG~~~~---l~~I~~ia~~~gi~vivD~a~~~----g~~~~~l~~~~~D---~~v~S 1591 (2602)
+++++++++++|++|++++||||||.+++ +++|+++|++||+++|+|++|.. +....++.....+ +++.|
T Consensus 271 ~~~l~~~~~~~~k~i~i~nP~NPTG~v~~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~~~~s~~~~~~~~~vi~~~S 350 (517)
T PRK13355 271 IDDIRSKITSRTKAIVIINPNNPTGALYPREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLEHTSIASLAPDLFCVTFSG 350 (517)
T ss_pred HHHHHHhcCcCceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhhcCCCCCcccHHHhCCCCeEEEEec
Confidence 99999999999999999999999999999 88899999999999999999752 1111122112122 33579
Q ss_pred cccccCCCc--eEEEEEe--cCCCCccccccccCCccccCCCCCcchhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q psy15216 1592 AHKIYGPKG--IGALYIR--RNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRL---ARIEMKEELKRILFLQKR 1664 (2602)
Q Consensus 1592 ~~K~~gp~G--~G~l~~~--~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~---~~~~~~~~~~~~~~l~~~ 1664 (2602)
|+|.++++| +||++++ +++++.+...+. ..... ..+.+.+.+.++..+|.. ....+... .+..+.+++
T Consensus 351 ~SK~~~~~G~RiG~~i~~~~~~~~~~~~~~l~---~~~~~-~~~~~~~~q~a~~~aL~~~~~~~~~~~~~-~~~~~~r~~ 425 (517)
T PRK13355 351 LSKSHMIAGYRIGWMILSGNKRIAKDYIEGLN---MLANM-RLCSNVPAQSIVQTALGGHQSVKDYLVPG-GRVYEQREL 425 (517)
T ss_pred chhhccCcccceEEEEeeCchhhHHHHHHHHH---HHhcC-cCCcChHHHHHHHHHhcCCccHHHHHHHH-HHHHHHHHH
Confidence 999888888 8999975 322221111000 00011 123555666666677752 12233332 344556788
Q ss_pred HHHHHhhcCCcEEEeCCCCCCCCceEEEEEecC--------CcHHHHHh-c--CCEEEccccccCCCCCChhHHHHHcCC
Q psy15216 1665 LYNGLMESIEEIYINGDMNNRIPHNLNISFNFI--------EGESLLMA-I--KDIAVSSGSACTSASLEPSYVLRALGC 1733 (2602)
Q Consensus 1665 l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~--------~~~~~~~~-L--~gI~v~~g~~~~~~~~~~~~~~~~~~~ 1733 (2602)
+.+.|.+ ++++.+..+ .+.++.|+.. +..+++.. | +||.+.+|..|...
T Consensus 426 l~~~L~~-~~g~~~~~p------~g~fy~~~~l~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~F~~~------------- 485 (517)
T PRK13355 426 VYNALNA-IPGISAVKP------KAAFYIFPKIDVKKFNIHDDEQFALDLLHDKKVLIVQGTGFNWD------------- 485 (517)
T ss_pred HHHHHhc-CCCcccCCC------CeeeEEEeecCcccCCCCCHHHHHHHHHHhCCEEEeCcchhCCC-------------
Confidence 9999977 678776533 2333333221 23344433 3 79999999887532
Q ss_pred CccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1734 NDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1734 ~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
..+++||++. .+.++++..+++|++
T Consensus 486 ----~~~~~Ris~~--~~~~~l~~a~~rl~~ 510 (517)
T PRK13355 486 ----KPDHFRVVYL--PRLEDLEDAMDRLAD 510 (517)
T ss_pred ----CcCEEEEEeC--CCHHHHHHHHHHHHH
Confidence 1379999995 578999999999987
|
|
| >KOG2862|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-21 Score=218.85 Aligned_cols=309 Identities=15% Similarity=0.184 Sum_probs=250.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCC-CcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEE
Q psy15216 1431 YGWTAEKAIEKARNEVAQLIYADP-REIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRV 1509 (2602)
Q Consensus 1431 ~~~~~~~~~~~lr~~ia~~~g~~~-~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v 1509 (2602)
.++....+.+++++-+...|.+.. .-.++..+++.|+..++..++ .|||.|++....-.+ ..++..+++.|++|
T Consensus 44 ~sPe~~qIm~~v~egikyVFkT~n~~tf~isgsGh~g~E~al~N~l----ePgd~vLv~~~G~wg-~ra~D~~~r~ga~V 118 (385)
T KOG2862|consen 44 MSPEFVQIMDEVLEGIKYVFKTANAQTFVISGSGHSGWEAALVNLL----EPGDNVLVVSTGTWG-QRAADCARRYGAEV 118 (385)
T ss_pred CCHHHHHHHHHHHHHHHHHhccCCCceEEEecCCcchHHHHHHhhc----CCCCeEEEEEechHH-HHHHHHHHhhCcee
Confidence 366778899999999999998743 347788889999999999887 799999998776666 34667778889999
Q ss_pred EEeccCCCCCcChhHHHhhccC-CceEEEEeccccccccccC-hHHHHHHhhhcCCEEEEecccccCcccccCCCCCccE
Q psy15216 1510 TYLKPKNNGLITLSQLEEKICS-DTILVSVMLVNNEIGVIQP-ILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDL 1587 (2602)
Q Consensus 1510 ~~v~~~~~~~id~d~l~~~i~~-~t~lv~l~~~~n~tG~~~~-l~~I~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~ 1587 (2602)
..|+.+++..+.++.+.+++.+ ++++++++|..+.||+..| ++.+.++||+|+++++||.+.+.|..++.+++|++|+
T Consensus 119 ~~v~~~~G~~~~le~i~~~lsqh~p~~vfv~hgdsSTgV~q~~~~~~g~lc~k~~~lllVD~VaSlggt~F~mDewgVDv 198 (385)
T KOG2862|consen 119 DVVEADIGQAVPLEEITEKLSQHKPKAVFVTHGDSSTGVLQDLLAISGELCHKHEALLLVDTVASLGGTEFEMDEWGVDV 198 (385)
T ss_pred eEEecCcccCccHHHHHHHHHhcCCceEEEEecCccccccchHHHHHHHHhhcCCeEEEEechhhcCCccceehhhcccE
Confidence 9999998888999999999975 6789999999999999999 7778899999999999999999999999999999999
Q ss_pred EEEcccc-ccCCCceEEEEEecCCCCcccc-------cc---------ccCCccccCCCCCcchhHHHHHHHHHH-HHHH
Q psy15216 1588 MSFSAHK-IYGPKGIGALYIRRNPRTRIEA-------QI---------HGGGHEYGLRSGTLATHQIVGMGEAFR-LARI 1649 (2602)
Q Consensus 1588 ~v~S~~K-~~gp~G~G~l~~~~~~~~~l~~-------~~---------~g~~~~~~~~~gt~~~~~~~al~~aL~-~~~~ 1649 (2602)
....++| +.+|+|++.+..++...++++. .+ ++.+.+.+....|+++..++++.+||. ..++
T Consensus 199 aytgSQKaL~aP~GLsiisfS~ka~~~~~~rK~~~~~~yFd~~~~~~~wgc~~e~~~yhhT~pv~lly~Lr~AL~~I~ee 278 (385)
T KOG2862|consen 199 AYTGSQKALGAPAGLSIISFSDKALEAIRDRKTKPVSFYFDILRLGNFWGCDGEPRAYHHTPPVQLLYSLRAALALIAEE 278 (385)
T ss_pred EEecchhhcCCCCCcceeecCHHHHHHHhhccCCceEEEEeHHhhcchhccCCcccccccCCcHHHHHHHHHHHHHHHHH
Confidence 9999999 7789999999888876554432 11 122333455567999999999999999 5668
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCC-CCCCCCceEEEEEe-cCCcHHHHHhc---CCEEEccccccCCCCCCh
Q psy15216 1650 EMKEELKRILFLQKRLYNGLMESIEEIYINGD-MNNRIPHNLNISFN-FIEGESLLMAI---KDIAVSSGSACTSASLEP 1724 (2602)
Q Consensus 1650 ~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~-~~~~~~~~~~~~~~-~~~~~~~~~~L---~gI~v~~g~~~~~~~~~~ 1724 (2602)
++++.+++++++.++++..|.+ .|++.+.. +..+.|....+..| +.+..++...+ .++.+..|.....
T Consensus 279 GL~~~~~rH~e~s~~l~~~l~~--~GLq~fv~~e~~rlptvttv~vp~gvDw~dVv~~~~~~~~vei~gglg~~~----- 351 (385)
T KOG2862|consen 279 GLENSWRRHREMSKWLKLSLEA--LGLQLFVVDEELRLPTVTTVKVPYGVDWKDVVAYAMSHYVVEIGGGLGPTV----- 351 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--hCccceecChhhccCcceeeecCCCCCHHHHHHHHHHhcCEEeccccCCCc-----
Confidence 8999999999999999999988 57766543 34466666667666 46777777665 4677665554333
Q ss_pred hHHHHHcCCCccccCCeEEEecCC-CCCHHHHHHHHHHHHHh
Q psy15216 1725 SYVLRALGCNDELAHSSIRFTIGR-FTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1725 ~~~~~~~~~~~~~~~~~iRls~~~-~~t~edid~li~~L~~~ 1765 (2602)
..++||.+.. ..+.+.|+..++.|+..
T Consensus 352 --------------gKv~RIGl~gcna~~e~i~~v~~ll~~a 379 (385)
T KOG2862|consen 352 --------------GKVFRIGLLGCNANVEYIDNVVELLKLA 379 (385)
T ss_pred --------------ccEEEEEEeeccCCcHHHHHHHHHHHHH
Confidence 2789999555 45789999999988863
|
|
| >PRK06225 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-21 Score=254.10 Aligned_cols=320 Identities=16% Similarity=0.148 Sum_probs=227.5
Q ss_pred CCCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhcc
Q psy15216 1401 ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKK 1480 (2602)
Q Consensus 1401 ~~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~ 1480 (2602)
+..++++.+.+++.+.+.....+. |. ......++|+++++++|+++++|++|+|+|+|++.++.++. .
T Consensus 38 ~~~~~~~~~~~a~~~~~~~~~~~~----y~----~~~g~~~lr~~ia~~l~~~~~~v~~~~g~t~al~~~~~~~~----~ 105 (380)
T PRK06225 38 NHLGPHEEVREAMIRCIEEGEYCK----YP----PPEGFPELRELILKDLGLDDDEALITAGATESLYLVMRAFL----S 105 (380)
T ss_pred CCCCCCHHHHHHHHHHHhcCCCCC----CC----CCcchHHHHHHHHHhcCCCCCcEEEeCCHHHHHHHHHHHhc----C
Confidence 345778889999998886421111 11 11236789999999999999999999999999999999887 7
Q ss_pred CCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCC---CCCcChhHHHhhccCCceEEEEeccccccccccC---hHHH
Q psy15216 1481 RGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN---NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEI 1554 (2602)
Q Consensus 1481 ~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~---~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~---l~~I 1554 (2602)
+||+|++++|.|+.+...++.. |++++.++++. ++.+|+++++++++++++++++++|+||||.+++ +++|
T Consensus 106 ~gd~vl~~~p~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NptG~~~~~~~~~~i 182 (380)
T PRK06225 106 PGDNAVTPDPGYLIIDNFASRF---GAEVIEVPIYSEECNYKLTPELVKENMDENTRLIYLIDPLNPLGSSYTEEEIKEF 182 (380)
T ss_pred CCCEEEEcCCCCcchHHHHHHh---CceEEeeccccccCCccCCHHHHHhhcCCCceEEEEeCCCCCCCcCCCHHHHHHH
Confidence 9999999999998776555544 99999998642 4579999999999999999999999999999987 8889
Q ss_pred HHHhhhcCCEEEEecccc---cCcccc-cCCCCCccEEEEccccccCCCc--eEEEEEecCCCCccccccccCCccccCC
Q psy15216 1555 GELCRSKGVIFHCDAAQA---VGKIDI-NIQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLR 1628 (2602)
Q Consensus 1555 ~~ia~~~gi~vivD~a~~---~g~~~~-~l~~~~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~ 1628 (2602)
.++|++||+++|+|+++. .+..+. .+ .....+++.|++|++|++| +||+++++++++.+.+... .
T Consensus 183 ~~~a~~~~~~ii~De~y~~~~~~~~~~~~~-~~~~~i~~~s~SK~~g~~G~RiG~i~~~~~l~~~~~~~~~--------~ 253 (380)
T PRK06225 183 AEIARDNDAFLLHDCTYRDFAREHTLAAEY-APEHTVTSYSFSKIFGMAGLRIGAVVATPDLIEVVKSIVI--------N 253 (380)
T ss_pred HHHHHHCCcEEEEehhHHHHhccCCchhhc-CCCCEEEEeechhhcCCccceeEEEecCHHHHHHHHHHHh--------c
Confidence 999999999999999974 222111 11 1134577789999889888 7999998877766654321 0
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEec--CCcHHHHHhc
Q psy15216 1629 SGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF--IEGESLLMAI 1706 (2602)
Q Consensus 1629 ~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~L 1706 (2602)
..+.+.....+...++.......+...+.++++++.+.+.|.+ ++++.+...+.. .....+.++. .+..++...|
T Consensus 254 ~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~l~~~l 330 (380)
T PRK06225 254 DLGTNVIAQEAAIAGLKVKDEWIDRIRRTTFKNQKLIKEAVDE-IEGVFLPVYPSH--GNMMVIDISEAGIDPEDLVEYL 330 (380)
T ss_pred ccCCCHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHh-CcCCccccCCCC--CeEEEEEcccccCCHHHHHHHH
Confidence 1223444444444555433334555666666777778888876 556432211111 1223333332 3556777666
Q ss_pred --CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1707 --KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1707 --~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
+||.+++|..|... ...+++|+|++. +.+++++++++|++.
T Consensus 331 ~~~gi~v~~g~~~~~~----------------~~~~~iR~s~~~--~~e~l~~~~~~l~~~ 373 (380)
T PRK06225 331 LERKIFVRQGTYTSKR----------------FGDRYIRVSFSI--PREQVEVFCEEFPDV 373 (380)
T ss_pred HHCCEEEcCCcccCcC----------------CCCceEEEEeCC--CHHHHHHHHHHHHHH
Confidence 79999988765332 113789999874 789999999999973
|
|
| >COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2e-21 Score=228.15 Aligned_cols=323 Identities=16% Similarity=0.192 Sum_probs=248.2
Q ss_pred cCCCCCCCHHHHHHHHHHHhhc-cCCCCCccchhHHHHHHHHHHHHHHHHHHhCC--CCCcEEEeCCHHHHHHHHHHhhh
Q psy15216 1399 KDATTPIDPRVVDKMIPYLRVQ-FGNPASRNHIYGWTAEKAIEKARNEVAQLIYA--DPREIIWTSGATESNNLAIKGAA 1475 (2602)
Q Consensus 1399 ~~~~~~~~~~v~eal~~~l~~~-~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~--~~~~iv~t~gaT~al~~al~~l~ 1475 (2602)
.+-+.+.++.+++++.+.++.. +|||.. ..++.+.+..+.++.++. +++.|+|++|.-.++..+++++.
T Consensus 33 ADMDf~~pp~i~~Al~~rvdhGvfGY~~~--------~~~~~~ai~~w~~~r~~~~i~~e~i~~~p~VVpgi~~~I~~~T 104 (388)
T COG1168 33 ADMDFPTPPEIIEALRERVDHGVFGYPYG--------SDELYAAIAHWFKQRHQWEIKPEWIVFVPGVVPGISLAIRALT 104 (388)
T ss_pred ecccCCCCHHHHHHHHHHHhcCCCCCCCC--------CHHHHHHHHHHHHHhcCCCCCcceEEEcCcchHhHHHHHHHhC
Confidence 3445688999999999999873 666633 345678888888888776 67789999999999999999998
Q ss_pred hhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccC-CC--CCcChhHHHhhccC-CceEEEEeccccccccccC-
Q psy15216 1476 HFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK-NN--GLITLSQLEEKICS-DTILVSVMLVNNEIGVIQP- 1550 (2602)
Q Consensus 1476 ~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~-~~--~~id~d~l~~~i~~-~t~lv~l~~~~n~tG~~~~- 1550 (2602)
++||.|++..|.|+.+...+... |.++...|+. .+ +.+|.++|++++.. +++++++|+||||||.++.
T Consensus 105 ----~~gd~Vvi~tPvY~PF~~~i~~n---~R~~i~~pL~~~~~~y~iD~~~LE~~~~~~~vkl~iLCnPHNP~Grvwt~ 177 (388)
T COG1168 105 ----KPGDGVVIQTPVYPPFYNAIKLN---GRKVIENPLVEDDGRYEIDFDALEKAFVDERVKLFILCNPHNPTGRVWTK 177 (388)
T ss_pred ----cCCCeeEecCCCchHHHHHHhhc---CcEEEeccccccCCcEEecHHHHHHHHhcCCccEEEEeCCCCCCCccccH
Confidence 89999999999999988777655 8888888865 33 45799999999875 5699999999999999998
Q ss_pred --hHHHHHHhhhcCCEEEEeccccc----Cccccc---CCCCC--ccEEEEccccccCCCc--eEEEEEecCCC-Ccccc
Q psy15216 1551 --ILEIGELCRSKGVIFHCDAAQAV----GKIDIN---IQNYK--VDLMSFSAHKIYGPKG--IGALYIRRNPR-TRIEA 1616 (2602)
Q Consensus 1551 --l~~I~~ia~~~gi~vivD~a~~~----g~~~~~---l~~~~--~D~~v~S~~K~~gp~G--~G~l~~~~~~~-~~l~~ 1616 (2602)
|.+|+++|++||+.||+|+.|+. |+.++. +.... .-+.+.|.+|.|...| +++++++++.. ++...
T Consensus 178 eeL~~i~elc~kh~v~VISDEIHaDlv~~g~~h~~~a~ls~~~a~~~it~~saSKtFNlaGL~~a~~Ii~n~~lr~~~~~ 257 (388)
T COG1168 178 EELRKIAELCLRHGVRVISDEIHADLVLGGHKHIPFASLSERFADNSITLTSASKTFNLAGLKCAYIIISNRELRAKFLK 257 (388)
T ss_pred HHHHHHHHHHHHcCCEEEeecccccccccCCCccchhhcChhhhcceEEEeeccccccchhhhheeEEecCHHHHHHHHH
Confidence 88899999999999999999973 322332 22222 2366668899887777 68888776432 22222
Q ss_pred ccccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEe-
Q psy15216 1617 QIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN- 1695 (2602)
Q Consensus 1617 ~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~- 1695 (2602)
.+ .....+.++..++.|..+|.+....++++..++++.+++++.+.+.+.+|++.+..|...+. .-+-+.
T Consensus 258 ~l------~~~~~~~~n~lg~~A~~aAY~~G~~WLd~L~~yl~~N~~~~~~~l~~~~P~v~v~~p~gTYL---~WLD~r~ 328 (388)
T COG1168 258 RL------KRNGLHGPSALGIIATEAAYNQGEPWLDELLEYLKDNRDYVADFLNKHLPGVKVTEPQGTYL---AWLDCRE 328 (388)
T ss_pred HH------HHhcCCCCchHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEecCCCcee---eeeeccc
Confidence 11 12234578899999999999988889999999999999999999999899999986544321 112222
Q ss_pred -cCCcHHHHHhc---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1696 -FIEGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1696 -~~~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
+.+..++...| .+|.+..|..|+.. ..|++|+.++ .+++-++.++++|+.
T Consensus 329 l~l~d~~l~~~ll~~akVal~~G~~FG~~-----------------g~gf~RlN~a--cpr~~L~eal~ri~~ 382 (388)
T COG1168 329 LGLDDSELAEFLLEEAKVALSPGSTFGEE-----------------GSGFVRLNFA--CPRAILEEALERLKR 382 (388)
T ss_pred cCCChHHHHHHHHHhhcEeccCCCccCcC-----------------CCceEEEecC--CCHHHHHHHHHHHHH
Confidence 23433444443 79999999998764 2489999988 578888888888875
|
|
| >PLN00145 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.7e-21 Score=251.62 Aligned_cols=314 Identities=16% Similarity=0.123 Sum_probs=225.3
Q ss_pred CCCCHHHHHHHHHHHhhcc--CCCCCccchhHHHHHHHHHHHHHHHHHHhC------CCCCcEEEeCCHHHHHHHHHHhh
Q psy15216 1403 TPIDPRVVDKMIPYLRVQF--GNPASRNHIYGWTAEKAIEKARNEVAQLIY------ADPREIIWTSGATESNNLAIKGA 1474 (2602)
Q Consensus 1403 ~~~~~~v~eal~~~l~~~~--~np~~~~~~~~~~~~~~~~~lr~~ia~~~g------~~~~~iv~t~gaT~al~~al~~l 1474 (2602)
.+.++.+.+++.+.++... .++.. ....++|++++++++ +++++|++|+|+++|+.+++.++
T Consensus 68 ~~~~~~~~~a~~~al~~~~~~~Y~~~----------~G~~~lr~aia~~~~~~~~~~~~~~~v~it~G~~~al~l~~~~l 137 (430)
T PLN00145 68 FRTAPEAEDAVAAALRSGKYNSYSTC----------VGLLPARRAIAEYLSRDLPYELSTDDIYLTAGCAQAIEIIMSVL 137 (430)
T ss_pred CCCCHHHHHHHHHHHHcCcCCCCCCC----------ccCHHHHHHHHHHHhhccCCCCChhhEEEeCCHHHHHHHHHHHh
Confidence 3667889999998886522 22221 235678888888873 36789999999999999999998
Q ss_pred hhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccC--CCCCcChhHHHhhccCCceEEEEeccccccccccC--
Q psy15216 1475 AHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK--NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP-- 1550 (2602)
Q Consensus 1475 ~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~--~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~-- 1550 (2602)
. ++||+|++++|.|+.+....... |++++.+++. .++.+|++++++++++++++++++||+||||.++|
T Consensus 138 ~----~~Gd~Vlv~~P~y~~y~~~~~~~---g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~P~NPtG~v~~~~ 210 (430)
T PLN00145 138 A----QPGANILLPRPGYPLYEARAVFS---GLEVRHFDLLPERGWEVDLEGVEALADENTVAMVIINPNNPCGSVYSYE 210 (430)
T ss_pred c----CCCCEEEEcCCCCccHHHHHHHc---CCEEEEeeCCcccCCcCCHHHHHHHhCcCceEEEEeCCCCCCCCCCCHH
Confidence 7 89999999999999987665554 8999998864 35779999999999999999999999999999999
Q ss_pred -hHHHHHHhhhcCCEEEEecccccCc----ccccC---CCCCccEEEEccccccCCCc--eEEEEEec--CCCCcc--cc
Q psy15216 1551 -ILEIGELCRSKGVIFHCDAAQAVGK----IDINI---QNYKVDLMSFSAHKIYGPKG--IGALYIRR--NPRTRI--EA 1616 (2602)
Q Consensus 1551 -l~~I~~ia~~~gi~vivD~a~~~g~----~~~~l---~~~~~D~~v~S~~K~~gp~G--~G~l~~~~--~~~~~l--~~ 1616 (2602)
+++|+++|++||+++|+|++++... ...++ .....-+++.|++|.|+++| +||++++. .+++.. ..
T Consensus 211 ~l~~i~~~a~~~~i~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pG~RlG~iv~~~~~~~~~~~~~~~ 290 (430)
T PLN00145 211 HLAKIAETARKLGILVIADEVYDHLTFGSKPFVPMGVFGEVAPVLTLGSISKRWVVPGWRLGWIATCDPNGILKETKVVD 290 (430)
T ss_pred HHHHHHHHHHHcCCEEEEeccchhhccCCCCccchhhhcccCcEEEEeccccccCCCCeeEEEEEEecchhhhhhhHHHH
Confidence 7788899999999999999975321 11121 22224477889999988888 99999842 232221 00
Q ss_pred ccccCCccccCCCCCcchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEe
Q psy15216 1617 QIHGGGHEYGLRSGTLATHQIVGMGEAFRL-ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN 1695 (2602)
Q Consensus 1617 ~~~g~~~~~~~~~gt~~~~~~~al~~aL~~-~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~ 1695 (2602)
.+.. .......++...+.++..+|.. ....+++.++++++.++.+++.|.+ ++++.+... |...++.+.
T Consensus 291 ~~~~----~~~~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~-~~g~~~~~~-----P~ga~y~~v 360 (430)
T PLN00145 291 SIRN----YLNISTDPATFVQGAIPQIIANTKEEFFTKTLGLLKETADICYEKIKE-IKCITCPHK-----PEGSMFVMV 360 (430)
T ss_pred HHHH----HhcccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCcC-----CCeeeEEEe
Confidence 0000 0001123455566666677763 3456788888999999999999977 566654322 222333332
Q ss_pred cC---------CcHHHHHhc---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHH
Q psy15216 1696 FI---------EGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK 1763 (2602)
Q Consensus 1696 ~~---------~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~ 1763 (2602)
.. +..++...| ++|.+.+|..|+.. +++||+++. +.++++..+++|+
T Consensus 361 ~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~fg~~-------------------~~lRis~~~--~~~~l~~al~rl~ 419 (430)
T PLN00145 361 KLDLSCLSGIKDDMDFCCKLAKEESVVVLPGSALGMK-------------------NWLRITFAI--DPPSLEDGLERLK 419 (430)
T ss_pred ccChhhcCCCCCHHHHHHHHHHhCCEEEeCccccCCC-------------------CeEEEEeCC--CHHHHHHHHHHHH
Confidence 11 234555444 68999999877543 899999984 6788999988888
Q ss_pred H
Q psy15216 1764 M 1764 (2602)
Q Consensus 1764 ~ 1764 (2602)
+
T Consensus 420 ~ 420 (430)
T PLN00145 420 S 420 (430)
T ss_pred H
Confidence 6
|
|
| >PRK08960 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.5e-22 Score=257.53 Aligned_cols=322 Identities=14% Similarity=0.098 Sum_probs=225.8
Q ss_pred CCCCCCC-CCCHHHHHHHHHHHhhh-cCCCCCCCcchhhhHHHHHHHHHHHHHHHhC------CCCCcEEEeCCHHHHHH
Q psy15216 1 MDYSATT-PIDPRVVDKMIPYLRVQ-FGNPASRNHIYGWTAEKAIEKARNEVAQLIY------ADPREIIWTSGATESNN 72 (2602)
Q Consensus 1 Ld~a~~~-~~p~~v~~a~~~~l~~~-~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g------~~~~~Iv~t~g~T~al~ 72 (2602)
|+++..+ ++|+.+.+++.+++... ..++ . .....++|+.+|++++ +++++|++|+|+++|++
T Consensus 37 l~~g~~~~~~~~~v~~a~~~~~~~~~~~Y~------~----~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~ 106 (387)
T PRK08960 37 LEIGEPDFTTAEPIVAAGQAALAAGHTRYT------A----ARGLPALREAIAGFYAQRYGVDVDPERILVTPGGSGALL 106 (387)
T ss_pred eCCCCCCCCCCHHHHHHHHHHHhcCCCccC------C----CCCCHHHHHHHHHHHHHHhCCCCChhhEEEccCcHHHHH
Confidence 4555555 67889999999887631 1111 1 1234567777777763 57889999999999999
Q ss_pred HHHHhcccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCC--CccChHHHHhhccCCceEEEEecccCccc
Q psy15216 73 LAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN--GLITLSQLEEKICSDTILVSVMLVNNEIG 150 (2602)
Q Consensus 73 ~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~--~~ld~e~l~~~i~~~tklv~i~~~~npTG 150 (2602)
+++.++. ++||+|++++|+|+++...+... |.+++.++++.+ +.+|+++++++++++++++++++||||||
T Consensus 107 ~~~~~~~----~~gd~vlv~~p~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG 179 (387)
T PRK08960 107 LASSLLV----DPGKHWLLADPGYPCNRHFLRLV---EGAAQLVPVGPDSRYQLTPALVERHWNADTVGALVASPANPTG 179 (387)
T ss_pred HHHHHhc----CCCCEEEEcCCCCcchHHHHHhc---CCeEEEEecCcccCCCCCHHHHHHHhCccceEEEEECCCCCCC
Confidence 9999887 89999999999999998877765 889999888653 46899999999999999999999999999
Q ss_pred ccccHH---HHHHHHHhcCCEEEEeccccccc---ccccCCCCC-ccEEEeccccccCCCC--cEEEEEecCCCCcccce
Q psy15216 151 VIQPIL---EIGELCRSKGVIFHCDAAQAVGK---IDINIQNYK-VDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQ 221 (2602)
Q Consensus 151 ~~~~l~---~I~~la~~~g~~livD~a~a~g~---~~~dl~~~~-~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~ 221 (2602)
.++|.+ +|+++|++||+++++|++|..-. .+..+.... ..+++.|+||.+|++| +||+++++++++.+...
T Consensus 180 ~~~~~~~~~~l~~~~~~~~~~li~De~Y~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~~~~~~~~~~~~~~ 259 (387)
T PRK08960 180 TLLSRDELAALSQALRARGGHLVVDEIYHGLTYGVDAASVLEVDDDAFVLNSFSKYFGMTGWRLGWLVAPPAAVPELEKL 259 (387)
T ss_pred cCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCChhhccCCEEEEeecccccCCcccEEEEEEcCHHHHHHHHHH
Confidence 999955 56677899999999999975321 111111222 2367789999999989 99999998877666543
Q ss_pred ecCCCccccccccCcchhHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc
Q psy15216 222 IHGGGHEYGLRSGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF 300 (2602)
Q Consensus 222 ~~g~~~~~~~~~gt~~~~~~~al~~al~-~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~ 300 (2602)
.. .+ ....+.+...++.+++. ....++.+.+..+.+.++.+.+.|.+ . ++.+...+.. ....++.++.
T Consensus 260 ~~------~~-~~~~s~~~q~a~~~~l~~~~~~~l~~~~~~~~~~~~~l~~~L~~-~-~~~~~~~p~g--~~f~~~~~~~ 328 (387)
T PRK08960 260 AQ------NL-YISASTPAQHAALACFEPETLAILEARRAEFARRRDFLLPALRE-L-GFGIAVEPQG--AFYLYADISA 328 (387)
T ss_pred Hh------hh-ccCCCHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHh-c-CCcCCcCCCe--eEEEEEeccc
Confidence 21 11 12334445444545554 12345667777888888889999876 2 5443211111 1223333432
Q ss_pred --cChhHHHHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 301 --IEGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 301 --~~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
.+..++...+ +||.+.+|..|... ...+++||+++. +.+.+...++.|++
T Consensus 329 ~~~~~~~~~~~ll~~~gi~v~pg~~f~~~----------------~~~~~iRi~~~~--~~~~l~~al~~l~~ 383 (387)
T PRK08960 329 FGGDAFAFCRHFLETEHVAFTPGLDFGRH----------------QAGQHVRFAYTQ--SLPRLQEAVERIAR 383 (387)
T ss_pred cCCCHHHHHHHHHHhCCEEEcCchHhCCC----------------CCCCeEEEEecC--CHHHHHHHHHHHHH
Confidence 3456666554 69999999876431 113799999984 56777777776664
|
|
| >PRK02731 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.7e-22 Score=255.20 Aligned_cols=304 Identities=15% Similarity=0.111 Sum_probs=225.8
Q ss_pred CCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCE
Q psy15216 9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKH 88 (2602)
Q Consensus 9 ~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~ 88 (2602)
+++.+++++.+.+.....+|.. ...++|+.+|+++|+++++|++|+|+++++++++.++. ++||.
T Consensus 46 ~~~~~~~a~~~~~~~~~~y~~~-----------~~~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~l~----~~gd~ 110 (367)
T PRK02731 46 PSPKAIEAIRAAADELHRYPDG-----------SGFELKAALAEKFGVDPERIILGNGSDEILELLARAYL----GPGDE 110 (367)
T ss_pred CCHHHHHHHHHHHHhhcCCCCC-----------cHHHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHHHhc----CCCCE
Confidence 5778889998887654444432 12578999999999988999999999999999998887 79999
Q ss_pred EEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHhc--C
Q psy15216 89 IITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSK--G 166 (2602)
Q Consensus 89 Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~~--g 166 (2602)
|++++|.|+.+...+. ..|++++.++. .++.+|++++++++++++++|++++|+||||.++|.++|.++++.+ |
T Consensus 111 vl~~~p~y~~~~~~~~---~~g~~~~~~~~-~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~ 186 (367)
T PRK02731 111 VIYSEHGFAVYPIAAQ---AVGAKPVEVPA-KDYGHDLDAMLAAVTPRTRLVFIANPNNPTGTYLPAEEVERFLAGVPPD 186 (367)
T ss_pred EEEecCCHHHHHHHHH---HcCCeEEEecc-cCCCCCHHHHHHHhCCCCcEEEEeCCCCCCCcCCCHHHHHHHHHhCCCC
Confidence 9999999977655443 45999999987 4567899999999998999999999999999999999999999874 8
Q ss_pred CEEEEecccccccc------cccCC-CCCccEEEeccccccCCCC--cEEEEEecCCCCcccceecCCCccccccccCcc
Q psy15216 167 VIFHCDAAQAVGKI------DINIQ-NYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLA 237 (2602)
Q Consensus 167 ~~livD~a~a~g~~------~~dl~-~~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~ 237 (2602)
+++++|++|..... +++.. .....+++.|++|.+|++| +||+++++++++.+..... ....+
T Consensus 187 ~~li~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~~~~~~~~l~~~~~---------~~~~~ 257 (367)
T PRK02731 187 VLVVLDEAYAEYVRRKDYEDGLELVAKFPNVVVTRTFSKAYGLAGLRVGYGIAPPEIIDALNRVRQ---------PFNVN 257 (367)
T ss_pred cEEEEECcHHHhccCcCcccHHHHHhhcCCEEEEeeehHhhcCcccceeeeeCCHHHHHHHHHccC---------CCCCC
Confidence 99999999753221 11111 1123477779999988887 6999999887776654321 11234
Q ss_pred hhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEc-ccChhHHHHHh--CCeE
Q psy15216 238 THQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN-FIEGESLLMAI--KDIA 314 (2602)
Q Consensus 238 ~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~L--~gI~ 314 (2602)
..+..++..+++. ..+.++..++++++++++.+.|.+ . ++.+. ++. ..++.+.++ ..+..++.+.| +||.
T Consensus 258 ~~~~~~a~~~l~~-~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~-~~~---g~~~~i~~~~~~~~~~~~~~L~~~gI~ 330 (367)
T PRK02731 258 SLALAAAVAALDD-DAFVEKSRALNAEGMAWLTEFLAE-L-GLEYI-PSV---GNFILVDFDDGKDAAEAYQALLKRGVI 330 (367)
T ss_pred HHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHH-C-CCccC-CCC---ceEEEEECCCCCCHHHHHHHHHHCCEE
Confidence 4444444455542 245678888888899999999977 3 66554 211 223334442 24566777777 8999
Q ss_pred EcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 315 VSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 315 v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
++++..+.. .+++|++++ +.+++++++++|++.
T Consensus 331 v~~~~~~~~-------------------~~~iRis~~---~~~e~~~l~~aL~~~ 363 (367)
T PRK02731 331 VRPVAGYGL-------------------PNALRITIG---TEEENRRFLAALKEF 363 (367)
T ss_pred EEeCCCCCC-------------------CCeEEEecC---CHHHHHHHHHHHHHH
Confidence 998765421 278999997 789999999999863
|
|
| >PRK00950 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.6e-22 Score=255.86 Aligned_cols=304 Identities=15% Similarity=0.158 Sum_probs=221.7
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEE-eCCHHHHHHHHHHhcccccccCC
Q psy15216 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIW-TSGATESNNLAIKGAAHFYKKRG 86 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~-t~g~T~al~~~~~~l~~~~~~~g 86 (2602)
++++.+.+++.+++.....+|.. ..+++|+.+|+++|+++++|++ ++|++++++.++.++. ++|
T Consensus 47 ~~~~~~~~~~~~~~~~~~~y~~~-----------~~~~lr~~ia~~~~~~~~~i~~~~~Ga~~~i~~~~~~~~----~~g 111 (361)
T PRK00950 47 GPSPKAVEAIEKELSKIHRYPEP-----------DAPELREALSKYTGVPVENIIVGGDGMDEVIDTLMRTFI----DPG 111 (361)
T ss_pred CCCHHHHHHHHHHHHhhcCCCCC-----------CHHHHHHHHHHHhCCCHHHEEEeCCCHHHHHHHHHHHhc----CCC
Confidence 56778888888877654444432 1378899999999999899999 7899999999998876 799
Q ss_pred CEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHhcC
Q psy15216 87 KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKG 166 (2602)
Q Consensus 87 d~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~~g 166 (2602)
|+|++++|.|+.+...++ ..|++++.++.++++.+|++++++.++++++++++++|+||||.++|.++|.++|+++|
T Consensus 112 d~vlv~~p~y~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~ 188 (361)
T PRK00950 112 DEVIIPTPTFSYYEISAK---AHGAKPVYAKREEDFSLDVDSVLNAITEKTKVIFLCTPNNPTGNLIPEEDIRKILESTD 188 (361)
T ss_pred CEEEEcCCChHHHHHHHH---HcCCEEEEeecCCCCCcCHHHHHHHhccCCCEEEEeCCCCCCCCCcCHHHHHHHHHHCC
Confidence 999999998887655544 44999999987777789999999999889999999999999999999999999999999
Q ss_pred CEEEEecccccccc--ccc-CCCCCccEEEeccccccCCCC--cEEEEEecCCCCcccceecCCCccccccccCcchhHH
Q psy15216 167 VIFHCDAAQAVGKI--DIN-IQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQI 241 (2602)
Q Consensus 167 ~~livD~a~a~g~~--~~d-l~~~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~ 241 (2602)
+++|+|++|..... ... +...+.-+++.|++|.+|++| +||+++++++++.+..... ....+.+..
T Consensus 189 ~~li~De~y~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~~~~~~~~~~~~~~~~---------~~~~~~~~~ 259 (361)
T PRK00950 189 ALVFVDEAYVEFAEYDYTPLALEYDNLIIGRTFSKVFGLAGLRIGYGFVPEWLIDYYMRAKT---------PFSLTRLSQ 259 (361)
T ss_pred cEEEEECchhhhCccchHHHHHhcCCEEEEEeehHhhcCchhhcchhcCCHHHHHHHHHhcC---------CCCCCHHHH
Confidence 99999999863221 011 112223477789999999888 8999998877665543321 112334444
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcccChhHHHHHh--CCeEEcccc
Q psy15216 242 VGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDIAVSSGS 319 (2602)
Q Consensus 242 ~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~v~~g~ 319 (2602)
.++..++.. ..++++..++.+++++++.+.|. +.+. ++. ..++.+.++..+..++.+.| +||.++++.
T Consensus 260 ~~a~~~l~~-~~~~~~~~~~~~~~r~~l~~~l~-----~~~~-~~~---~~~i~~~~~~~~~~~~~~~l~~~gv~v~~~~ 329 (361)
T PRK00950 260 AAAIAALSD-KEYIEKSIEHGIKSREYLYNELP-----FKVY-PSE---ANFVLVDVTPMTAKEFCEELLKRGVIVRDCT 329 (361)
T ss_pred HHHHHHhcC-HHHHHHHHHHHHHHHHHHHhhcC-----eeEC-CCc---ceEEEEECCCCCHHHHHHHHHHCCEEEeeCC
Confidence 444445542 23456666666777766666653 3333 211 12333444445667777776 799999876
Q ss_pred cCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 320 ACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 320 ~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
.+... .++++|+|++ +.+++++++++|++
T Consensus 330 ~f~~~-----------------~~~~lRis~~---~~~~~~~l~~~L~~ 358 (361)
T PRK00950 330 SFRGL-----------------GDYYIRVSIG---TFEENERFLEILKE 358 (361)
T ss_pred ccCCC-----------------CCCeEEEECC---CHHHHHHHHHHHHH
Confidence 54211 1378999998 78899999999986
|
|
| >PLN03026 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-21 Score=253.04 Aligned_cols=314 Identities=13% Similarity=0.103 Sum_probs=227.1
Q ss_pred eeeeccC--CCCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHH
Q psy15216 1394 TNIVFKD--ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAI 1471 (2602)
Q Consensus 1394 ~~v~L~~--~~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al 1471 (2602)
..+.|+. +..++++.+.+++.+.. ....+|.. ...++|+++++++|+++++|++|+|+++++..++
T Consensus 53 ~~i~l~~n~~p~~~~~~v~~a~~~~~-~~~~Yp~~-----------~~~~lr~~ia~~~~~~~~~I~~t~Ga~~~i~~~~ 120 (380)
T PLN03026 53 DIVKLDANENPYGPPPEVLEALGNMK-FPYVYPDP-----------ESRRLRAALAEDSGLESENILVGCGADELIDLLM 120 (380)
T ss_pred ceEEccCCCCCCCCCHHHHHHHHhhH-hhccCCCC-----------CHHHHHHHHHHHhCcChhhEEEcCCHHHHHHHHH
Confidence 3455543 33456777888876532 11123332 1457999999999999999999999999999999
Q ss_pred HhhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhc-cCCceEEEEeccccccccccC
Q psy15216 1472 KGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKI-CSDTILVSVMLVNNEIGVIQP 1550 (2602)
Q Consensus 1472 ~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i-~~~t~lv~l~~~~n~tG~~~~ 1550 (2602)
.++. ++||+|++++|.|+.+....+. .|++++.++.+.++.+|++++++++ ++++++|++++|+||||.++|
T Consensus 121 ~~~~----~~gd~Vlv~~P~y~~y~~~~~~---~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~~~v~l~~P~NPTG~~~~ 193 (380)
T PLN03026 121 RCVL----DPGDKIIDCPPTFGMYVFDAAV---NGAEVIKVPRTPDFSLDVPRIVEAVETHKPKLLFLTSPNNPDGSIIS 193 (380)
T ss_pred HHhc----CCCCEEEEcCCChHHHHHHHHH---cCCEEEEeecCCCCCcCHHHHHHHHhccCCcEEEEeCCCCCCCCCCC
Confidence 8886 8999999999999876655444 4999999998777889999999999 789999999999999999999
Q ss_pred hHHHHHHhhhcCCEEEEecccccCc---cccc-CCCCCccEEEEccccccCCCc--eEEEEEecCCCCccccccccCCcc
Q psy15216 1551 ILEIGELCRSKGVIFHCDAAQAVGK---IDIN-IQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHE 1624 (2602)
Q Consensus 1551 l~~I~~ia~~~gi~vivD~a~~~g~---~~~~-l~~~~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~~g~~~~ 1624 (2602)
.+++.++++.. +++++|++|..-. .... +...+..+++.||+|.+|++| +||++.++++++.+.....
T Consensus 194 ~~~l~~l~~~~-~~vi~DeaY~~~~~~~~~~~~~~~~~~viv~~SfSK~~glaGlRiGy~~~~~~~i~~l~~~~~----- 267 (380)
T PLN03026 194 DDDLLKILELP-ILVVLDEAYIEFSTQESRMKWVKKYDNLIVLRTFSKRAGLAGLRVGYGAFPLSIIEYLWRAKQ----- 267 (380)
T ss_pred HHHHHHHHhcC-CEEEEECcchhhcCCcchHHHHHhCCCEEEEecchHhhcCccccceeeecCHHHHHHHHHhcC-----
Confidence 99999999765 8999999985211 1111 222344588899999999888 8999998877666543321
Q ss_pred ccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEe-cCCcHHHH
Q psy15216 1625 YGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN-FIEGESLL 1703 (2602)
Q Consensus 1625 ~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~-~~~~~~~~ 1703 (2602)
..+.+...+.++.++|.. ...+++.++++.+.++++.+.|.+ ++++.+. ++. .....+.++ ..+..++.
T Consensus 268 ----~~~~~~~~q~aa~~aL~~-~~~~~~~~~~~~~~r~~l~~~L~~-~~~~~~~-p~~---~~f~~~~~~~~~~~~~~~ 337 (380)
T PLN03026 268 ----PYNVSVAAEVAACAALSN-PKYLEDVKNALVEERERLFGLLKE-VPFLEPY-PSD---ANFILCRVTSGRDAKKLK 337 (380)
T ss_pred ----CCCCCHHHHHHHHHHhhC-HHHHHHHHHHHHHHHHHHHHHHHH-CCCCeEC-CCC---CeEEEEECCCCCCHHHHH
Confidence 123455555566566653 244677788888889999999987 5444442 211 122222332 23456666
Q ss_pred Hhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1704 MAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1704 ~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
..| +||.++++..... .+++|||++ +.+++++++++|++
T Consensus 338 ~~l~~~gI~v~~~~~~~~-------------------~~~lRis~~---~~~~~~~l~~al~~ 378 (380)
T PLN03026 338 EDLAKMGVMVRHYNSKEL-------------------KGYIRVSVG---KPEHTDALMEALKQ 378 (380)
T ss_pred HHHHHCCeEEEECCCCCC-------------------CCEEEEecC---CHHHHHHHHHHHHH
Confidence 666 7999987643211 278999998 77899999999985
|
|
| >PRK07681 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-21 Score=254.77 Aligned_cols=310 Identities=15% Similarity=0.124 Sum_probs=225.3
Q ss_pred CCCHHHHHHHHHHHhhc--cCCCCCccchhHHHHHHHHHHHHHHHHHHhC------CCC-CcEEEeCCHHHHHHHHHHhh
Q psy15216 1404 PIDPRVVDKMIPYLRVQ--FGNPASRNHIYGWTAEKAIEKARNEVAQLIY------ADP-REIIWTSGATESNNLAIKGA 1474 (2602)
Q Consensus 1404 ~~~~~v~eal~~~l~~~--~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g------~~~-~~iv~t~gaT~al~~al~~l 1474 (2602)
+.++.+.+++.+.+... ++++.. ...++|+.++++++ +++ ++|++|+|+++++..++.++
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~y~~~-----------G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~~ 113 (399)
T PRK07681 45 PPADFVREEMVHTANQKESYGYTLS-----------GIQEFHEAVTEYYNNTHNVILNADKEVLLLMGSQDGLVHLPMVY 113 (399)
T ss_pred CCCHHHHHHHHHHHhccccCCCCCC-----------CcHHHHHHHHHHHHHHhCCCCCCCCeEEECCCcHHHHHHHHHHh
Confidence 45677888888876531 222211 24567888888774 477 78999999999999999988
Q ss_pred hhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCC--CCcChhHHHhhccCCceEEEEeccccccccccC--
Q psy15216 1475 AHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN--GLITLSQLEEKICSDTILVSVMLVNNEIGVIQP-- 1550 (2602)
Q Consensus 1475 ~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~--~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~-- 1550 (2602)
. ++||+|++++|+|+.+....... |++++.++.+++ +.+|++++++++++++++|++++|+||||.+++
T Consensus 114 ~----~~Gd~Vlv~~P~y~~~~~~~~~~---G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~v~l~~P~NPTG~~~s~~ 186 (399)
T PRK07681 114 A----NPGDIILVPDPGYTAYETGIQMA---GATSYYMPLKKENDFLPDLELIPEEIADKAKMMILNFPGNPVPAMAHED 186 (399)
T ss_pred C----CCCCEEEECCCCccchHHHHHhc---CCEEEEEecCCCCCCcCCHHHHHHhccccceEEEEeCCCCCcCcCCCHH
Confidence 7 89999999999999988776655 999999998753 458999999999889999999999999999999
Q ss_pred -hHHHHHHhhhcCCEEEEecccccCc----ccccC---CC-CCccEEEEccccccCCCc--eEEEEEecCCCCccccccc
Q psy15216 1551 -ILEIGELCRSKGVIFHCDAAQAVGK----IDINI---QN-YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIH 1619 (2602)
Q Consensus 1551 -l~~I~~ia~~~gi~vivD~a~~~g~----~~~~l---~~-~~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~~ 1619 (2602)
+++|+++|++||+++|+|++|+.-. .+..+ .. ....+++.||||.+|++| +||++.++++++.+....
T Consensus 187 ~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~i~~~~l~~~~~~~~- 265 (399)
T PRK07681 187 FFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLSVPGAKEVGVEINSLSKSYSLAGSRIGYMIGNEEIVRALTQFK- 265 (399)
T ss_pred HHHHHHHHHHHcCeEEEEeccchhheeCCCCCCChhhCCCCcccEEEEeecccccCCccceeEEEecCHHHHHHHHHHH-
Confidence 7788889999999999999986321 11121 11 123577889999998888 899999887776664332
Q ss_pred cCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEE--e-c
Q psy15216 1620 GGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISF--N-F 1696 (2602)
Q Consensus 1620 g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~--~-~ 1696 (2602)
.....+.+.+...++..+|......+++.+++++++++++.+.|.+ . ++.+..+. ...++++ + .
T Consensus 266 ------~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~p~-----~g~f~~~~l~~~ 332 (399)
T PRK07681 266 ------SNTDYGVFLPIQKAACAALRNGAAFCEKNRGIYQERRDTLVDGFRT-F-GWNVDKPA-----GSMFVWAEIPKG 332 (399)
T ss_pred ------hhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH-C-CCcccCCC-----eeeEEEEECCCC
Confidence 1112244455555565666533345667777888888999999987 3 55543221 1222232 2 2
Q ss_pred CCcHHHHHhc---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1697 IEGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1697 ~~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
.+..++...+ +||.+.+|..|... ..+++||+++ .+.++++.++++|++
T Consensus 333 ~~~~~~~~~l~~~~gv~v~pg~~f~~~-----------------~~~~iRis~~--~~~~~~~~~l~~l~~ 384 (399)
T PRK07681 333 WTSLSFAYALMDRANVVVTPGHAFGPH-----------------GEGFVRIALV--QDEEVLQQAVENIRN 384 (399)
T ss_pred CCHHHHHHHHHHhCCEEEeCChhhCcC-----------------CCCeEEEEec--CCHHHHHHHHHHHHH
Confidence 2445666555 69999999876432 1279999998 468999999999987
|
|
| >PRK14807 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.2e-21 Score=248.88 Aligned_cols=309 Identities=18% Similarity=0.160 Sum_probs=224.2
Q ss_pred CCCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhcc
Q psy15216 1401 ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKK 1480 (2602)
Q Consensus 1401 ~~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~ 1480 (2602)
.+.++|+.+.+++.+.+.....+ .|.. ....++|+.+++++++++++|++|+|+++++..++.++. +
T Consensus 32 ~~~~~p~~~~~a~~~~~~~~~~~----~y~~-----~~~~~lr~~ia~~~~~~~~~i~it~G~~~~l~~~~~~l~----~ 98 (351)
T PRK14807 32 TPFELPEEVIKNIQEIVKSSQVN----IYPD-----PTAEKLREELARYCSVVPTNIFVGNGSDEIIHLIMLAFI----N 98 (351)
T ss_pred CCCCCCHHHHHHHHHHhhcCccc----CCCC-----ccHHHHHHHHHHHhCCCcccEEEecCHHHHHHHHHHHhc----C
Confidence 34567889999998877531111 1110 124678999999999999999999999999999999886 8
Q ss_pred CCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccC-CceEEEEeccccccccccChHHHHHHhh
Q psy15216 1481 RGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS-DTILVSVMLVNNEIGVIQPILEIGELCR 1559 (2602)
Q Consensus 1481 ~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~-~t~lv~l~~~~n~tG~~~~l~~I~~ia~ 1559 (2602)
+||+|++++|.|+.+....+. .|++++.++.++++.+|++++++++++ ++++|++++|+||||.++|.+++.++++
T Consensus 99 ~gd~Vlv~~p~y~~~~~~~~~---~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~k~v~l~~p~NPtG~~~~~~~l~~l~~ 175 (351)
T PRK14807 99 KGDVVIYPHPSFAMYSVYSKI---AGAVEIPVKLKEDYTYDVGSFIKVIEKYQPKLVFLCNPNNPTGSVIEREDIIKIIE 175 (351)
T ss_pred CCCEEEEeCCChHHHHHHHHH---cCCeEEEeecCCCCCCCHHHHHHHhhccCCCEEEEeCCCCCCCCCCCHHHHHHHHH
Confidence 999999999999876554444 499999999887788999999999975 8999999999999999999999999999
Q ss_pred hcCCEEEEeccccc--Cccccc-CCCCCccEEEEccccccCCCc--eEEEEEecCCCCccccccccCCccccCCCCCcch
Q psy15216 1560 SKGVIFHCDAAQAV--GKIDIN-IQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLAT 1634 (2602)
Q Consensus 1560 ~~gi~vivD~a~~~--g~~~~~-l~~~~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~ 1634 (2602)
+++.++|+|++|.. +....+ +......+++.|++|.+|++| +||++.++++++.+..... ....+.
T Consensus 176 ~~~~~~ivDe~y~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRiG~~v~~~~~~~~~~~~~~---------~~~~~~ 246 (351)
T PRK14807 176 KSRGIVVVDEAYFEFYGNTIVDVINEFENLIVLRTLSKAFGLAGLRVGYAVANENILKYLNLVKS---------PYNINS 246 (351)
T ss_pred hCCCEEEEeCcchhhcccchHHHhhhCCCEEEEecchHhcccchhceeeeecCHHHHHHHHHccC---------CCCcCH
Confidence 98889999999842 111111 112234588889999888888 8999998877665543210 123344
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecCCcHHHHHhc--CCEEEc
Q psy15216 1635 HQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDIAVS 1712 (2602)
Q Consensus 1635 ~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~v~ 1712 (2602)
..+.++..+++. ..+++..+++.++++++.+.|.+ .+++.+. ++. ..++++...+...+...| +||.++
T Consensus 247 ~~q~~~~~~l~~--~~~~~~~~~~~~~r~~l~~~l~~-~~g~~~~-~~~-----~~~~~i~~~~~~~~~~~l~~~gV~v~ 317 (351)
T PRK14807 247 LSQVIALKVLRT--GVLKERVNYILNERERLIKELSK-IPGIKVY-PSK-----TNFILVKFKDADYVYQGLLERGILVR 317 (351)
T ss_pred HHHHHHHHHHhH--HHHHHHHHHHHHHHHHHHHHHHh-CCCcEEC-cCC-----ccEEEEEcCCHHHHHHHHHHCCEEEE
Confidence 455555555542 34566666777888889999876 6787654 222 122333333455565555 799987
Q ss_pred cccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1713 SGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1713 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
+...... ..+++||+++ +.++.++++++|++
T Consensus 318 ~~~~~~~------------------~~~~iRis~~---~~~~~~~l~~~l~~ 348 (351)
T PRK14807 318 DFSKVEG------------------LEGALRITVS---SCEANDYLINGLKE 348 (351)
T ss_pred ECCCCCC------------------CCCeEEEEcC---CHHHHHHHHHHHHH
Confidence 5432110 1278999998 67899999999986
|
|
| >COG3844 Kynureninase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-21 Score=220.55 Aligned_cols=347 Identities=16% Similarity=0.177 Sum_probs=263.6
Q ss_pred eeceeeeccCCCC-CCCHHHHHHHHHHHhhccCCCCCccch-hHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHH
Q psy15216 1391 RPYTNIVFKDATT-PIDPRVVDKMIPYLRVQFGNPASRNHI-YGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNN 1468 (2602)
Q Consensus 1391 iP~~~v~L~~~~~-~~~~~v~eal~~~l~~~~~np~~~~~~-~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~ 1468 (2602)
.|...+||+.++. ..|..+..+..+.....|+.-.-+.|. ....+..+-..+-.+++.++|+.+.+++++.+++--++
T Consensus 28 lp~~viyLdgnSLGa~p~~~~a~~~q~a~deW~~~lirsw~~a~~~W~~lp~~lgdklApLiGA~~~Evvv~dtts~nl~ 107 (407)
T COG3844 28 LPGGVIYLDGNSLGARPRAVTARLQQVATDEWGEGLIRSWNKAKADWFDLPERLGDKLAPLIGARAGEVVVTDTTSINLF 107 (407)
T ss_pred CCCCeEEeeccccccCchHHHHHHHHHHHHHHHhhhhhhhcccCCchhhchhHHHHHhhhhhcCCCCceEEeCCcchHHH
Confidence 6888999997775 445455555554444334322111111 12344566778889999999999999999999999998
Q ss_pred HHHHhhhhhhccCCCEEEEcCCC-CcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccCCceEEEEecccccccc
Q psy15216 1469 LAIKGAAHFYKKRGKHIITVQTE-HKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGV 1547 (2602)
Q Consensus 1469 ~al~~l~~~~~~~gd~Vlv~~~~-~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~ 1547 (2602)
.++.+..+ .++|+.||+++-. ||+-..+.+-+. ++.-+-.+-.+.+.+.++++++++++.+|+++|++.-||.
T Consensus 108 k~L~aalr--~~~~r~vIv~E~~~fpTdly~a~g~~----~~~~~~~~~~~~~~P~~~~~~~~dd~AvV~L~~V~y~TGq 181 (407)
T COG3844 108 KVLAAALR--PQEGRRVIVSEGDNFPTDLYIAEGLA----DLLGIGYDLEGVIAPRALEEAITDDVAVVLLSHVNYKTGQ 181 (407)
T ss_pred HHHHHHhc--cCCCceEEeecCCCCCcchhhhcchh----hhhcccccceeeeChHHHHHhhccceEEEEeccccccccc
Confidence 88888763 3568888887654 666544443331 1111112223556888999999999999999999999999
Q ss_pred ccChHHHHHHhhhcCCEEEEecccccCcccccCCCCCccEEEEcccc-c-cCCCceEEEEEecCCCCccccccccCCc--
Q psy15216 1548 IQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-I-YGPKGIGALYIRRNPRTRIEAQIHGGGH-- 1623 (2602)
Q Consensus 1548 ~~~l~~I~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K-~-~gp~G~G~l~~~~~~~~~l~~~~~g~~~-- 1623 (2602)
++++.+|..++|+||++++.|-||++|.+|.+++.+++||-+.++|| + .||.+.+++++.++..+...+..-||..
T Consensus 182 l~dm~aiT~~AH~~galv~wDLAHsaGavp~~Lh~~gaDfaigcsyKYLNgGPGapa~l~v~~~h~e~~~~~lsgW~gha 261 (407)
T COG3844 182 LLDMRAITALAHQHGALVGWDLAHSAGAVPVDLHAAGADFAIGCSYKYLNGGPGAPAGLFVAPRHRERSWPPLSGWWGHA 261 (407)
T ss_pred eeeHHHHHHHHHhcCceEEeehhcccCCcceeecccCCCeeeeeeceeccCCCCCceeEEeccccccccccccccccCCC
Confidence 99999999999999999999999999999999999999999999999 3 4677799999999888877776666654
Q ss_pred --------------cccCCCCCcchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhcCC--cEEEeCCCCCCC
Q psy15216 1624 --------------EYGLRSGTLATHQIVGMGEAFRL-ARIEMKEELKRILFLQKRLYNGLMESIE--EIYINGDMNNRI 1686 (2602)
Q Consensus 1624 --------------~~~~~~gt~~~~~~~al~~aL~~-~~~~~~~~~~~~~~l~~~l~~~L~~~~~--gl~i~~~~~~~~ 1686 (2602)
..+|..||+++..+.++..+|+. ....+.+.+++...++.++.+.+....+ ++++..|.++ .
T Consensus 262 ~pf~m~~~y~p~~ga~rf~~gt~~V~s~aal~~aLDifa~~~i~~lR~kSlaLTd~fieLvEa~~~~~~l~l~tPr~~-~ 340 (407)
T COG3844 262 RPFAMEEVYAPGPGARRFLCGTQPVLSLAALEGALDIFADVDITELRKKSLALTDYFIELVEARCEYYGLTLVTPRAH-E 340 (407)
T ss_pred CcchhhhccCcCccccceeeCCcchhhhHHHhhhhhhhhhcCHHHHHHhhhHHHHHHHHHHHhccccCCcEEeccchh-h
Confidence 24567789999999999999994 4456899999999999999999987665 7788877654 2
Q ss_pred CceEEEEEecCCcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCC-CCCHHHHHHHHHHHH
Q psy15216 1687 PHNLNISFNFIEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGR-FTTEKEIDFTIKLLK 1763 (2602)
Q Consensus 1687 ~~~~~~~~~~~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~-~~t~edid~li~~L~ 1763 (2602)
-.+.-+++.......+.+.| +||..- .. ..+.+|+.+.+ |++..|+..+++.|.
T Consensus 341 ~rGsqvS~~hp~~~~V~qaLi~rGVigD---~R--------------------~P~vlRfgftPlY~~~~DVw~AV~~L~ 397 (407)
T COG3844 341 ERGSQVSLYHPHGYQVMQALIDRGVIGD---FR--------------------EPDVLRFGFTPLYVSFVDVWDAVDALE 397 (407)
T ss_pred hccceeeEecCcHHHHHHHHHHcCcccc---cc--------------------CCCeeeecCccceechhHHHHHHHHHH
Confidence 23444556555777888777 676632 21 12789999886 899999999999999
Q ss_pred Hhhh
Q psy15216 1764 MKEF 1767 (2602)
Q Consensus 1764 ~~~~ 1767 (2602)
+.+.
T Consensus 398 evL~ 401 (407)
T COG3844 398 EVLD 401 (407)
T ss_pred HHHH
Confidence 8643
|
|
| >PRK07324 transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=5e-22 Score=256.26 Aligned_cols=287 Identities=17% Similarity=0.181 Sum_probs=212.6
Q ss_pred HHHHHHHHHHHhC-CCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCC-
Q psy15216 1439 IEKARNEVAQLIY-ADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN- 1516 (2602)
Q Consensus 1439 ~~~lr~~ia~~~g-~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~- 1516 (2602)
..++|+.++++++ +++++|++|+|+++|+.+++.++. ++||+|+++.|.|+++....+.. |++++.++.+.
T Consensus 64 ~~~lr~~ia~~~~~~~~~~vi~t~G~~~al~~~~~~l~----~~gd~Vl~~~P~y~~~~~~~~~~---g~~v~~v~~~~~ 136 (373)
T PRK07324 64 SPEFKEAVASLYQNVKPENILQTNGATGANFLVLYALV----EPGDHVISVYPTYQQLYDIPESL---GAEVDYWQLKEE 136 (373)
T ss_pred CHHHHHHHHHHhcCCChhhEEEcCChHHHHHHHHHHhC----CCCCEEEEcCCCchhHHHHHHHc---CCEEEEEecccc
Confidence 4689999999985 688899999999999999999987 89999999999998876655544 99999999875
Q ss_pred -CCCcChhHHHhhccCCceEEEEeccccccccccC---hHHHHHHhhhcCCEEEEecccccCcc---cccCCC-CCccEE
Q psy15216 1517 -NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQAVGKI---DINIQN-YKVDLM 1588 (2602)
Q Consensus 1517 -~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~---l~~I~~ia~~~gi~vivD~a~~~g~~---~~~l~~-~~~D~~ 1588 (2602)
++.+|+++++++++++|+++++++|+||||.++| +++|+++|++||+++++|++++.-.. ..++.. .+..++
T Consensus 137 ~~~~~d~~~l~~~~~~~~kli~i~~p~NPtG~~~~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~~~~~s~~~~~~~~I~ 216 (373)
T PRK07324 137 NGWLPDLDELRRLVRPNTKLICINNANNPTGALMDRAYLEEIVEIARSVDAYVLSDEVYRPLDEDGSTPSIADLYEKGIS 216 (373)
T ss_pred cCCCCCHHHHHHhCCCCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCCChhhccCCEEE
Confidence 3458999999999999999999999999999999 88999999999999999999753111 111111 123477
Q ss_pred EEccccccCCCc--eEEEEEecCCCCccccccccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15216 1589 SFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLY 1666 (2602)
Q Consensus 1589 v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~ 1666 (2602)
+.|++|.+|++| +||+++++++++.+..... ....+.+.....+...+|+.....++..++.++++++.+.
T Consensus 217 ~~s~SK~~~~~G~RiG~i~~~~~li~~~~~~~~-------~~~~~~~~~~q~~a~~~l~~~~~~l~~~~~~~~~~~~~l~ 289 (373)
T PRK07324 217 TNSMSKTYSLPGIRVGWIAANEEVIDILRKYRD-------YTMICAGVFDDMLASLALEHRDAILERNRKIVRTNLAILD 289 (373)
T ss_pred EecchhhcCCccceeEEEecCHHHHHHHHHHhC-------cEEecCChHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence 789999888888 7999998777766654321 1111233334444445565334456667777788888888
Q ss_pred HHHhhcCCcEEEeCCCCCCCCceEEEEEec-CCcHHHHHhc---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeE
Q psy15216 1667 NGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSI 1742 (2602)
Q Consensus 1667 ~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i 1742 (2602)
+.|.+ .+++....|... ....+.++. .+..++...| +||.+.+|..|..+ +++
T Consensus 290 ~~l~~-~~~~~~~~p~gg---~~~~i~~~~~~~~~~~~~~ll~~~gv~v~pg~~F~~~-------------------~~i 346 (373)
T PRK07324 290 EWVAK-EPRVSYVKPKAV---STSFVKLDVDMPSEDFCLKLLKETGVLLVPGNRFDLE-------------------GHV 346 (373)
T ss_pred HHHhc-CCCceEECCCce---EEEEEEeCCCCCHHHHHHHHHHhcCEEEECccccCCC-------------------CeE
Confidence 88876 566665533211 122334432 3556676664 69999999877543 799
Q ss_pred EEecCCCCCHHHHHHHHHHHHH
Q psy15216 1743 RFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1743 Rls~~~~~t~edid~li~~L~~ 1764 (2602)
|||++. +.+.++..+++|++
T Consensus 347 Ris~~~--~~~~l~~~l~rl~~ 366 (373)
T PRK07324 347 RIGYCC--DTETLKKGLKKLSE 366 (373)
T ss_pred EEEecC--CHHHHHHHHHHHHH
Confidence 999974 67889999998886
|
|
| >cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-21 Score=256.01 Aligned_cols=302 Identities=16% Similarity=0.144 Sum_probs=215.0
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccC--CCEEEEcCCCCcchHHHHHHHH-hCCcEE
Q psy15216 1433 WTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKR--GKHIITVQTEHKSVLDSIRKLE-NDGFRV 1509 (2602)
Q Consensus 1433 ~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~--gd~Vlv~~~~~~s~~~~~~~~~-~~G~~v 1509 (2602)
....+..+++++++++++|++.+++++++|++.+.+.++.++. +.+ ||+|+++++.|+++...+..+. ..|+++
T Consensus 60 ~g~~~~~~~~~~~la~~~g~~~~~v~~~~~g~~~~~~~~~~~~---~~~~~gd~Vl~~~~~h~~~~~~~~~~~~~~g~~~ 136 (398)
T cd00613 60 QGRLQALFELQTMLCELTGMDVANASLQDEATAAAEAAGLAAI---RAYHKRNKVLVPDSAHPTNPAVARTRGEPLGIEV 136 (398)
T ss_pred hhHHHHHHHHHHHHHHHHCCCccceeccCchHHHHHHHHHHHH---hcccCCCEEEEcCccCcchHHHHHHhcccCCcEE
Confidence 4455788999999999999877788888877766555555443 244 9999999999999999888773 345899
Q ss_pred EEeccCCCCCcChhHHHhhccCCceEEEEeccccccccccCh-HHHHHHhhhcCCEEEEecccccCcccccCCCCCccEE
Q psy15216 1510 TYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPI-LEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLM 1588 (2602)
Q Consensus 1510 ~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l-~~I~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~ 1588 (2602)
+.++.++++.+|+++++++++++|++|++++++ ++|.+.|+ ++|.++|++||+++|+|++|+.+..+.+...+++|++
T Consensus 137 ~~v~~~~~~~~d~~~l~~~i~~~t~~viv~~~~-~~G~~~~~l~~i~~la~~~g~~livD~~~~~~~~~~~~~~~~~d~~ 215 (398)
T cd00613 137 VEVPSDEGGTVDLEALKEEVSEEVAALMVQYPN-TLGVFEDLIKEIADIAHSAGALVYVDGDNLNLTGLKPPGEYGADIV 215 (398)
T ss_pred EEeccCCCCCcCHHHHHHhcCCCeEEEEEECCC-CCceecchHHHHHHHHHhcCCEEEEEeccccccCCCChHHcCCCEE
Confidence 999987777899999999999999999999985 89999985 9999999999999999999987766666667789999
Q ss_pred EEccccccCC-----CceEEEEEecCCCCccccccccCCc-----------------cccCCCCCcch-----hHHHHHH
Q psy15216 1589 SFSAHKIYGP-----KGIGALYIRRNPRTRIEAQIHGGGH-----------------EYGLRSGTLAT-----HQIVGMG 1641 (2602)
Q Consensus 1589 v~S~~K~~gp-----~G~G~l~~~~~~~~~l~~~~~g~~~-----------------~~~~~~gt~~~-----~~~~al~ 1641 (2602)
++|+||+++| +|+|++++++++++.+.+...++.. ..+++.+++++ ....+..
T Consensus 216 ~~s~~K~~~p~g~Ggp~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~~~~~~~~~~~~~~~a~ 295 (398)
T cd00613 216 VGNLQKTGVPHGGGGPGAGFFAVKKELVRFLPGRLVGVTKDAEGNRAFRLALQTREQHIRREKATSNICTGQALLALMAA 295 (398)
T ss_pred EeeccccCCCCCCCCCceeEEEEhhhhHhhCCCCeeccccccCCCcceEEecccchhhcccccccccceecHHHHHHHHH
Confidence 9999996643 4589999998877765443222211 01122233322 2222222
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEec---CCcHHHHHhc--CCEEEcccc
Q psy15216 1642 EAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF---IEGESLLMAI--KDIAVSSGS 1715 (2602)
Q Consensus 1642 ~aL~-~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~L--~gI~v~~g~ 1715 (2602)
.++. ....+++++.+++.+++++++++|.+ +++... +... ......+.++. .+..++...| ++|.+....
T Consensus 296 ~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~-~~~~~~--~~~~-~~~~v~~~~~~~~~~~~~~~~~~L~~~gi~~~~~~ 371 (398)
T cd00613 296 MYIVYLGPEGLKEIAERAHLNANYLAKRLKE-VGGVLP--FNGP-FFHEFVLRLPPLYGIRAEDLAKALIDGGFHAPTMY 371 (398)
T ss_pred HHHHHhCHHHHHHHHHHHHHHHHHHHHHHHh-cCCccc--CCCC-eeEEEEEEcCCcchHHHHHHHHhhhhcCccccccc
Confidence 3333 33456788899999999999999987 444331 1111 11223344432 1344566655 455432100
Q ss_pred ccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHH
Q psy15216 1716 ACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLL 1762 (2602)
Q Consensus 1716 ~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L 1762 (2602)
+ ...+.+|+|++.++|.+|||+++++|
T Consensus 372 ---~-----------------~~~~~lRis~~~~~t~edid~~~~~L 398 (398)
T cd00613 372 ---L-----------------PVDGTLMIEPTETETKEELDALLEAL 398 (398)
T ss_pred ---c-----------------CCCCeEEEEcCCCCCHHHHHHHHHhC
Confidence 0 01268999999999999999999864
|
This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life. |
| >TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.8e-22 Score=251.09 Aligned_cols=313 Identities=14% Similarity=0.168 Sum_probs=227.0
Q ss_pred CCCCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhccccccc
Q psy15216 5 ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKK 84 (2602)
Q Consensus 5 ~~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~ 84 (2602)
+.+++|+.+++++.++..+.. ...+..+++++++++++|++ ++++++|+|+|+++++.++. +
T Consensus 21 g~s~~~~~v~~a~~~~~~~~~------------~~~~~~~~~~~~~a~~~g~~--~~~~~~g~t~al~~al~al~----~ 82 (363)
T TIGR01437 21 GVSTVSDEVADAQKRGAQNYF------------EIKELVNKTGEYIANLLGVE--DAVIVSSASAGIAQSVAAVI----T 82 (363)
T ss_pred CCCCCCHHHHHHHHHHHhcCC------------CHHHHHHHHHHHHHHhhCCC--eEEEEcCHHHHHHHHHHHHh----c
Confidence 345789999999999875311 13467899999999999975 78999999999999999987 7
Q ss_pred CCC---------------EEEEcCCCCcccHHHH-HHHHhCCcEEEEeccCCCCccChHHHHhhccCCceEEE-EecccC
Q psy15216 85 RGK---------------HIITVQTEHKSVLDSI-RKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVS-VMLVNN 147 (2602)
Q Consensus 85 ~gd---------------~Vlv~~~~~~s~~~~~-~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~-i~~~~n 147 (2602)
+|| +|+++.+.|..+...+ ..+...|+++++++. ++.+|+++++++|+++|++++ +++++|
T Consensus 83 ~Gd~~~~~~~~~s~~~~~eVi~~~~~~~~~~~~~~~~~~~~g~~~v~v~~--~~~~d~~~le~ai~~~t~ai~~v~~~~~ 160 (363)
T TIGR01437 83 RGNRYLVENLHDSKIEVNEVVLPKGHNVDYGAPVETMVRLGGGKVVEAGY--ANECSAEQLEAAITEKTAAILYIKSHHC 160 (363)
T ss_pred CCCcchhhcccccccccceEEEECccchhcCCchHHHHHhcCCeEEEEcC--CCCCCHHHHHHhcChhceEEEEEecCCC
Confidence 787 9999987776553222 222345999999976 356999999999999999666 577899
Q ss_pred cccccccHHHHHHHHHhcCCEEEEecccccccccccCCCCCccEEEecccc-ccCCCCcEEEEEecCCCCcccceecCCC
Q psy15216 148 EIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGG 226 (2602)
Q Consensus 148 pTG~~~~l~~I~~la~~~g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K-~~Gp~G~G~l~~~~~~~~~l~~~~~g~~ 226 (2602)
|+|.+.|+++|+++||+||+++++|++|+.... ....+++|++++|+|| +.||. .|+++.++++++.+.+...+.
T Consensus 161 ~~g~~~~~~~i~~~a~~~gi~vivD~a~~~~~~--~~~~~g~D~~~~S~~K~l~gp~-~G~l~~~~~~i~~~~~~~~~~- 236 (363)
T TIGR01437 161 VQKSMLSVEDAAQVAQEHNLPLIVDAAAEEDLQ--KYYRLGADLVIYSGAKAIEGPT-SGLVLGKKKYIEWVKLQSKGI- 236 (363)
T ss_pred CcCCcCCHHHHHHHHHHcCCeEEEECCCCCchH--HHHHcCCCEEEEeCCcccCCCc-eEEEEEcHHHHHHHHhccCCC-
Confidence 999999999999999999999999999973221 1123578999999999 67888 699998877766665433222
Q ss_pred ccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCC--CCCceEEEEEc----c
Q psy15216 227 HEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNN--RIPHNLNISFN----F 300 (2602)
Q Consensus 227 ~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~--~~~~~~~~~~~----~ 300 (2602)
.+.++.++. .++++.+|+++......+..+.+.+++++++++|.+ ++|++++.+... .......+.|. +
T Consensus 237 -~~~~~~~~~---~~~gl~aAl~~~~~~~~~~~~~~~~~~~~l~~~L~~-i~g~~~~~~~~~~~~~~~~~~v~~~~~~~g 311 (363)
T TIGR01437 237 -GRAMKVGKE---NILGLTAALEQYLSTGKESGAEMVAKLTPFIEALNT-LKGVSASIVQDEAGRDIARAEIRFDESELG 311 (363)
T ss_pred -cceeccCHH---HHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHhc-CCCeEEEEecCCCCCcCceEEEEEeccCCC
Confidence 133344443 367777788855543334444445567789999987 789988743221 11111234444 4
Q ss_pred cChhHHHHHhC--C--eEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 301 IEGESLLMAIK--D--IAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 301 ~~~~~~~~~L~--g--I~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
.++.++.+.|+ + |.+++ ++.+ .+.+|+++.. ++++|++.++++|++
T Consensus 312 ~~~~~l~~~L~~~~~~I~~r~--~~~~-------------------~~~~~l~~~~-~~~~e~~~~~~~l~~ 361 (363)
T TIGR01437 312 MTAADVVQALRQGEPAIYTRG--YKAN-------------------EGIIEIDPRS-VTGGQLDIIVERIRE 361 (363)
T ss_pred CCHHHHHHHHhcCCCCEEEee--eeec-------------------CCeEEEEeec-CCHHHHHHHHHHHHH
Confidence 57788888882 5 66653 2222 2779999875 569999999999985
|
This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation. |
| >PTZ00377 alanine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.3e-21 Score=258.00 Aligned_cols=317 Identities=19% Similarity=0.152 Sum_probs=222.1
Q ss_pred CCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhC------CCCCcEEEeCCHHHHHHHHHHhhhh
Q psy15216 1403 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIY------ADPREIIWTSGATESNNLAIKGAAH 1476 (2602)
Q Consensus 1403 ~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g------~~~~~iv~t~gaT~al~~al~~l~~ 1476 (2602)
...|..+++++.++++.... ....|. ......++|++++++++ +++++|++|+|+++|+..+++++.
T Consensus 87 ~~~P~~~~~~~~~~~~~~~~--~~~~Y~----~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~- 159 (481)
T PTZ00377 87 SLFPADVVARAKEYLNAIGG--GTGAYT----DSAGYPFVRKAVAAFIERRDGVPKDPSDIFLTDGASSGIKLLLQLLI- 159 (481)
T ss_pred ccCCHHHHHHHHHHHHhCCC--cccCcC----cccCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhc-
Confidence 34577888888776654211 111122 22346678888888874 578899999999999999999885
Q ss_pred hhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCC--CCCcChhHHHhhccC------CceEEEEeccccccccc
Q psy15216 1477 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICS------DTILVSVMLVNNEIGVI 1548 (2602)
Q Consensus 1477 ~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~id~d~l~~~i~~------~t~lv~l~~~~n~tG~~ 1548 (2602)
.++||+|++++|.|+.+...++.+ |++++.+++++ ++.+|+++|++++++ +++++++++|+||||.+
T Consensus 160 --~~~gD~Vlv~~P~y~~y~~~~~~~---g~~~v~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~l~l~~P~NPTG~~ 234 (481)
T PTZ00377 160 --GDPSDGVMIPIPQYPLYSAAITLL---GGKQVPYYLDEEKGWSLDQEELEEAYEQAVRNGITPRALVVINPGNPTGQV 234 (481)
T ss_pred --cCCCCEEEECCCCchhHHHHHHHc---CCEEEEEEeccccCCCCCHHHHHHHHHHHHhcCCCeeEEEEECCCCCCCcC
Confidence 258999999999999988777666 99999999874 357999999999975 79999999999999999
Q ss_pred cC---hHHHHHHhhhcCCEEEEecccccCc----cc-cc-------CCCC---C-ccEEEEcccc-ccCCCc--eEEEEE
Q psy15216 1549 QP---ILEIGELCRSKGVIFHCDAAQAVGK----ID-IN-------IQNY---K-VDLMSFSAHK-IYGPKG--IGALYI 1606 (2602)
Q Consensus 1549 ~~---l~~I~~ia~~~gi~vivD~a~~~g~----~~-~~-------l~~~---~-~D~~v~S~~K-~~gp~G--~G~l~~ 1606 (2602)
++ +++|+++|++||+++|+|+++..-. .+ .. +... + .-+++.|++| ++|++| +||+++
T Consensus 235 ~s~e~~~~i~~~a~~~~~~iI~De~Y~~l~~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~~~~GlRiG~~~~ 314 (481)
T PTZ00377 235 LTRDVMEEIIKFCYEKGIVLMADEVYQENIYDGEKPFISFRKVLLELPAEYNTDVELVSFHSTSKGIIGECGRRGGYFEL 314 (481)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEehhhHhhccCCCCCcccHHHHHHhhcccccCCeEEEEEecCCcccccCCcCceEEEEE
Confidence 99 8889999999999999999975311 01 11 1111 1 1256779999 578888 899987
Q ss_pred ---ecCCCCccccccccCCccccCCCCCcchhHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy15216 1607 ---RRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRL----------ARIEMKEELKRILFLQKRLYNGLMESI 1673 (2602)
Q Consensus 1607 ---~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~----------~~~~~~~~~~~~~~l~~~l~~~L~~~~ 1673 (2602)
++++++.+..... ...+++...+.++..+|+. ....+.....+++++++.+.+.|.+ +
T Consensus 315 ~~~p~~li~~l~~~~~--------~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~-~ 385 (481)
T PTZ00377 315 TNIPPEVREQIYKLAS--------INLCSNVVGQLMTGLMCNPPREGDASYPLYKRERDAIFTSLKRRAELLTDELNK-I 385 (481)
T ss_pred eCCCHHHHHHHHHHhh--------eecCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C
Confidence 6666665544320 1123555566666666631 1223444555678888899999987 6
Q ss_pred CcEEEeCCCCCCCCceEEEEEecC----------------CcHHHHHh-c--CCEEEccccccCCCCCChhHHHHHcCCC
Q psy15216 1674 EEIYINGDMNNRIPHNLNISFNFI----------------EGESLLMA-I--KDIAVSSGSACTSASLEPSYVLRALGCN 1734 (2602)
Q Consensus 1674 ~gl~i~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~-L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~ 1734 (2602)
+++.+..+ .+.++.|+.. +...++.. | +||.+.+|..|...
T Consensus 386 ~g~~~~~p------~gg~fl~~~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~F~~~-------------- 445 (481)
T PTZ00377 386 EGVSCQPV------EGAMYAFPRIELPEKAIQEAKERGLAPDVLYCLELLESTGIVVVPGSGFGQK-------------- 445 (481)
T ss_pred CCcEeecC------CeeEEEEeeccCchhhHHHHHhcCCCcHHHHHHHHHHHcCEEEeCCcccCCC--------------
Confidence 78777633 2223333211 11223222 2 79999999988532
Q ss_pred ccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1735 DELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1735 ~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
...+++|+|++ .+.++++.++++|++
T Consensus 446 --~~~~~~Rls~~--~~~e~l~~~l~rl~~ 471 (481)
T PTZ00377 446 --PGTYHFRITIL--PPEEQIEEMVKKIKE 471 (481)
T ss_pred --CCCCEEEEEEC--CCHHHHHHHHHHHHH
Confidence 01268999998 578899999999987
|
|
| >PRK06207 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-21 Score=253.63 Aligned_cols=330 Identities=16% Similarity=0.151 Sum_probs=227.3
Q ss_pred eceeeeccCCC---CCCCHHHHHHHHHHHhhc--cCCCCCccchhHHHHHHHHHHHHHHHHHHhCC--CC-CcEEEeCCH
Q psy15216 1392 PYTNIVFKDAT---TPIDPRVVDKMIPYLRVQ--FGNPASRNHIYGWTAEKAIEKARNEVAQLIYA--DP-REIIWTSGA 1463 (2602)
Q Consensus 1392 P~~~v~L~~~~---~~~~~~v~eal~~~l~~~--~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~--~~-~~iv~t~ga 1463 (2602)
|...++++... ..+++.+.+++.+.+... .+|++. .+..++.+.+.+++++++|. ++ ++|++|+|+
T Consensus 38 ~~~~i~l~~g~~~~~~p~~~~~~~~~~~~~~~~~~~Y~~~------~G~~~LR~aia~~l~~~~g~~~~~~~~I~it~Ga 111 (405)
T PRK06207 38 PGRPVDFSHGDVDAHEPTPGAFELFSAGVERGGVQAYTEY------RGDADIRELLAARLAAFTGAPVDAADELIITPGT 111 (405)
T ss_pred CCCceecCCcCCCCCCCCHHHHHHHHHHHhcCCCccCCCC------CCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCc
Confidence 44445565322 245677888888877542 223322 11223445555555555674 66 789999999
Q ss_pred HHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccC-----CCCCcChhHHHhhccCCceEEEE
Q psy15216 1464 TESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK-----NNGLITLSQLEEKICSDTILVSV 1538 (2602)
Q Consensus 1464 T~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~-----~~~~id~d~l~~~i~~~t~lv~l 1538 (2602)
++++..++.++. ++||+|++++|.|+.+......+ |++++.++++ .++.+|+++|++++.++++++++
T Consensus 112 ~~al~~~~~~l~----~~Gd~Vlv~~P~y~~~~~~~~~~---g~~v~~v~~~~~~~~~~~~~d~~~l~~~~~~~~k~v~l 184 (405)
T PRK06207 112 QGALFLAVAATV----ARGDKVAIVQPDYFANRKLVEFF---EGEMVPVQLDYLSADKRAGLDLDQLEEAFKAGVRVFLF 184 (405)
T ss_pred HHHHHHHHHHhc----CCCCEEEEeCCCchhHHHHHHHc---CCEEEEEeccccCcccCCCcCHHHHHHhhhhcCeEEEE
Confidence 999999999887 89999999999999987666655 9999988875 24679999999999999999999
Q ss_pred eccccccccccC---hHHHHHHhhhcCCEEEEeccccc----CcccccCCC----CCccEEEEccccccCCCc--eEEEE
Q psy15216 1539 MLVNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQAV----GKIDINIQN----YKVDLMSFSAHKIYGPKG--IGALY 1605 (2602)
Q Consensus 1539 ~~~~n~tG~~~~---l~~I~~ia~~~gi~vivD~a~~~----g~~~~~l~~----~~~D~~v~S~~K~~gp~G--~G~l~ 1605 (2602)
++|+||||.+++ +++|+++|++||+++|+|++++. +..+..+.. ...-+++.||+|.+|++| +||++
T Consensus 185 ~~P~NPTG~~~s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~lpGlRiG~ii 264 (405)
T PRK06207 185 SNPNNPAGVVYSAEEIAQIAALARRYGATVIVDQLYSRLLYDGTSYTHLRALPIDPENVITIMGPSKTESLSGYRLGVAF 264 (405)
T ss_pred CCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCchhcCCCCcCcEEEEecchhhccCcccceEEEE
Confidence 999999999999 67788899999999999999864 211111211 123378889999888778 99999
Q ss_pred EecCCCCccccccccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCC
Q psy15216 1606 IRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNR 1685 (2602)
Q Consensus 1606 ~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~ 1685 (2602)
.++++++.+..... ....+.+...+.++..+|+.....+++..+++.+.++++.+.|.+ .+++.+..+...
T Consensus 265 ~~~~l~~~~~~~~~-------~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~-~~~~~~~~p~gg- 335 (405)
T PRK06207 265 GSPAIIDRMEKLQA-------IVSLRAAGYSQAVLRTWFSEPDGWMKDRIARHQAIRDDLLRVLRG-VEGVFVRAPQAG- 335 (405)
T ss_pred cCHHHHHHHHHHHh-------HhccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhc-CCCceecCCCee-
Confidence 98877666643321 111123333444555555422233566677777888888888876 556655422111
Q ss_pred CCceEEEEEec--CCcHHHHHhc---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHH
Q psy15216 1686 IPHNLNISFNF--IEGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIK 1760 (2602)
Q Consensus 1686 ~~~~~~~~~~~--~~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~ 1760 (2602)
....+.++. .+..++...| +||.+.+|..|... ..+++||+++. +.++++..++
T Consensus 336 --~fl~~~l~~~~~~~~~~~~~l~~~~gV~v~pG~~F~~~-----------------~~~~~Ris~~~--~~~~l~~al~ 394 (405)
T PRK06207 336 --SYLFPRLPRLAVSLHDFVKILRLQAGVIVTPGTEFSPH-----------------TADSIRLNFSQ--DHAAAVAAAE 394 (405)
T ss_pred --EEEEEeCcccCCCHHHHHHHHHHhcCEEEeCchHhCCC-----------------CCCeEEEEecC--CHHHHHHHHH
Confidence 112222222 2345666655 59999999877432 12799999985 6799999999
Q ss_pred HHHH
Q psy15216 1761 LLKM 1764 (2602)
Q Consensus 1761 ~L~~ 1764 (2602)
+|.+
T Consensus 395 rl~~ 398 (405)
T PRK06207 395 RIAQ 398 (405)
T ss_pred HHHH
Confidence 9886
|
|
| >PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-21 Score=263.04 Aligned_cols=316 Identities=15% Similarity=0.129 Sum_probs=220.6
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHh------CCCCCcEEEeCCHHHHHHHHHHhcccc
Q psy15216 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI------YADPREIIWTSGATESNNLAIKGAAHF 81 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~------g~~~~~Iv~t~g~T~al~~~~~~l~~~ 81 (2602)
++|+.+++++.+.+.....|+.. ....++|+++++++ ++++++|++|+|+++++++++.++.
T Consensus 162 ~~p~~~~~~~~~~~~~~~~Y~~~----------~G~~~lReaia~~~~~~~~~~~~~~~I~it~G~~eal~~~~~~l~-- 229 (517)
T PRK13355 162 RTPDEVVYDMAQQLTDTEGYSDS----------KGLFSARKAIMQYAQLKGLPNVDVDDIYTGNGVSELINLSMSALL-- 229 (517)
T ss_pred CCCHHHHHHHHHHhhcCCCCCCC----------cChHHHHHHHHHHHHhcCCCCCChhHEEEeCcHHHHHHHHHHHhC--
Confidence 45888899988877543333332 23567888888888 6788999999999999999999987
Q ss_pred cccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCC--CCccChHHHHhhccCCceEEEEecccCccccccc---HH
Q psy15216 82 YKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---IL 156 (2602)
Q Consensus 82 ~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~---l~ 156 (2602)
++||+|++++|.|+.+...+..+ |++++.+++++ ++.+|+++++++++++|+++++++||||||.+++ ++
T Consensus 230 --~~Gd~Vli~~P~y~~y~~~~~~~---g~~~v~~~~~~~~~~~~d~~~l~~~~~~~~k~i~i~nP~NPTG~v~~~~~l~ 304 (517)
T PRK13355 230 --DDGDEVLIPSPDYPLWTACVNLA---GGTAVHYRCDEQSEWYPDIDDIRSKITSRTKAIVIINPNNPTGALYPREVLQ 304 (517)
T ss_pred --CCCCEEEEcCCCCcCHHHHHHHC---CCEEEEeecCcccCCCCCHHHHHHhcCcCceEEEEECCCCCCCcCcCHHHHH
Confidence 89999999999999988777666 99999998764 4679999999999999999999999999999999 77
Q ss_pred HHHHHHHhcCCEEEEeccccccc----ccccCCCCCcc---EEEeccccccCCCC--cEEEEEe--cCCCCcccceecCC
Q psy15216 157 EIGELCRSKGVIFHCDAAQAVGK----IDINIQNYKVD---LMSFSAHKIYGPKG--IGALYIR--RNPRTRIEAQIHGG 225 (2602)
Q Consensus 157 ~I~~la~~~g~~livD~a~a~g~----~~~dl~~~~~D---~~~~S~~K~~Gp~G--~G~l~~~--~~~~~~l~~~~~g~ 225 (2602)
+|+++|++|+++||+|++|..-. ....+..+..+ +++.|++|.|+++| +||++++ +++.+.+...+.
T Consensus 305 ~i~~~a~~~~~~ii~DE~Y~~~~~~~~~~~s~~~~~~~~~vi~~~S~SK~~~~~G~RiG~~i~~~~~~~~~~~~~~l~-- 382 (517)
T PRK13355 305 QIVDIAREHQLIIFSDEIYDRLVMDGLEHTSIASLAPDLFCVTFSGLSKSHMIAGYRIGWMILSGNKRIAKDYIEGLN-- 382 (517)
T ss_pred HHHHHHHHcCcEEEEehhhhhhcCCCCCcccHHHhCCCCeEEEEecchhhccCcccceEEEEeeCchhhHHHHHHHHH--
Confidence 88899999999999999975211 11111112222 44579999998888 8999965 322222111000
Q ss_pred CccccccccCcchhHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc--
Q psy15216 226 GHEYGLRSGTLATHQIVGMGEAFRL---ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-- 300 (2602)
Q Consensus 226 ~~~~~~~~gt~~~~~~~al~~al~~---~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~-- 300 (2602)
.... ....++.+...++..+|.. ....+... .+..+.++++.+.|.+ ++|+.+..|... ..+++.++.
T Consensus 383 -~~~~-~~~~~~~~~q~a~~~aL~~~~~~~~~~~~~-~~~~~~r~~l~~~L~~-~~g~~~~~p~g~---fy~~~~l~~~~ 455 (517)
T PRK13355 383 -MLAN-MRLCSNVPAQSIVQTALGGHQSVKDYLVPG-GRVYEQRELVYNALNA-IPGISAVKPKAA---FYIFPKIDVKK 455 (517)
T ss_pred -HHhc-CcCCcChHHHHHHHHHhcCCccHHHHHHHH-HHHHHHHHHHHHHHhc-CCCcccCCCCee---eEEEeecCccc
Confidence 0000 1123555666666677741 12233332 3445567888899876 678776644321 111222331
Q ss_pred ---cChhHHHHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 301 ---IEGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 301 ---~~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
.+..+++..+ +||.+.+|..|... .++++||++. .++++++..+++|++
T Consensus 456 ~~~~~~~~~~~~ll~~~gV~v~pg~~F~~~-----------------~~~~~Ris~~--~~~~~l~~a~~rl~~ 510 (517)
T PRK13355 456 FNIHDDEQFALDLLHDKKVLIVQGTGFNWD-----------------KPDHFRVVYL--PRLEDLEDAMDRLAD 510 (517)
T ss_pred CCCCCHHHHHHHHHHhCCEEEeCcchhCCC-----------------CcCEEEEEeC--CCHHHHHHHHHHHHH
Confidence 1233444443 79999999877431 1379999995 588999999999985
|
|
| >PRK01533 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.5e-22 Score=253.66 Aligned_cols=299 Identities=16% Similarity=0.134 Sum_probs=221.4
Q ss_pred CCCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhcc
Q psy15216 1401 ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKK 1480 (2602)
Q Consensus 1401 ~~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~ 1480 (2602)
+..++++.+++++.+.+.....+|.. ...++|+.+++++++++++|++|+|+++++..+++++. +
T Consensus 39 n~~~~~~~v~~a~~~~~~~~~~Yp~~-----------g~~~Lr~aia~~~~~~~~~I~vt~Gs~e~i~~~~~~l~----~ 103 (366)
T PRK01533 39 NPFGCSPRVLDELQKSWLDHALYPDG-----------GATTLRQTIANKLHVKMEQVLCGSGLDEVIQIISRAVL----K 103 (366)
T ss_pred CCCCCCHHHHHHHHHHHHhcCcCCCC-----------CHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHhc----C
Confidence 44577889999998877654445543 14679999999999999999999999999999999987 8
Q ss_pred CCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccCCceEEEEeccccccccccChHHHHHH---
Q psy15216 1481 RGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGEL--- 1557 (2602)
Q Consensus 1481 ~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~~i--- 1557 (2602)
+||+|++++|+|+.+...+... |++++.++.+ ++.+|+++++++++++++++++++||||||.++|.+++.++
T Consensus 104 ~gd~vlv~~P~y~~~~~~~~~~---g~~v~~v~~~-~~~~d~~~l~~~~~~~~~~v~i~~P~NPTG~~~~~~~l~~l~~~ 179 (366)
T PRK01533 104 AGDNIVTAGATFPQYRHHAIIE---GCEVKEVALN-NGVYDLDEISSVVDNDTKIVWICNPNNPTGTYVNDRKLTQFIEG 179 (366)
T ss_pred CCCEEEEcCCcHHHHHHHHHHc---CCEEEEeecC-CCCcCHHHHHHHhCcCCcEEEEeCCCCCCCCCcCHHHHHHHHHh
Confidence 9999999999999988776555 9999999886 45699999999999999999999999999999996655555
Q ss_pred hhhcCCEEEEecccccCcc------ccc-CCCCCccEEEEccccccCCCc--eEEEEEecCCCCccccccccCCccccCC
Q psy15216 1558 CRSKGVIFHCDAAQAVGKI------DIN-IQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLR 1628 (2602)
Q Consensus 1558 a~~~gi~vivD~a~~~g~~------~~~-l~~~~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~ 1628 (2602)
|++++ ++|+|+++..-.. .+. +...+..+++.||+|.+|++| +||+++++++++.+.... .
T Consensus 180 ~~~~~-~~iiDe~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiG~~i~~~~~~~~l~~~~---------~ 249 (366)
T PRK01533 180 ISENT-LIVIDEAYYEYVTAKDFPETLPLLEKHKNILVLRTFSKAYGLASFRVGYAVGHEELIEKLNVVR---------L 249 (366)
T ss_pred CCCCC-EEEEEccHHHhhccccCcchhHHhccCCCEEEEeCchHHhcChHHHHhHHhCCHHHHHHHHHhc---------C
Confidence 45555 6778999752110 111 112234578889999999888 899999887776665432 1
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecCCcHHHHHhc--
Q psy15216 1629 SGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI-- 1706 (2602)
Q Consensus 1629 ~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~L-- 1706 (2602)
.++.+...+.++..+|+. ....+..++...+.++++.+.+.. .++.+..+ ...+++++..+..++...|
T Consensus 250 ~~~~~~~~q~aa~~~l~~-~~~~~~~~~~~~~~r~~~~~~l~~--~g~~~~~~------~~nf~~~~~~~~~~~~~~l~~ 320 (366)
T PRK01533 250 PFNVSSLAQKAATIAFGD-DEFIEEIVRVNTEGLRQYESFCKE--NEIPFYQS------QTNFIFLPVENGGEIYEACAH 320 (366)
T ss_pred CCCcCHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHh--CCCccCCC------cCcEEEEeCCCHHHHHHHHHH
Confidence 235666666666677752 234556666677777777777766 35554432 1223444433556666666
Q ss_pred CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1707 KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1707 ~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
+||.|++ | + +++||+++ +.+++++++++|++
T Consensus 321 ~GI~Vr~---~--~-------------------~~iRis~~---~~~~~~~l~~al~~ 351 (366)
T PRK01533 321 AGFIIRP---F--P-------------------NGVRITVG---TREQNEGVISVLQQ 351 (366)
T ss_pred CCcEEcc---C--C-------------------CceEEeCC---CHHHHHHHHHHHHH
Confidence 8999985 2 1 67999998 88999999999986
|
|
| >TIGR03540 DapC_direct LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-21 Score=255.43 Aligned_cols=312 Identities=15% Similarity=0.119 Sum_probs=222.7
Q ss_pred CCCHHHHHHHHHHHhhh--cCCCCCCCcchhhhHHHHHHHHHHHHHHHh----CC--CCC-cEEEeCCHHHHHHHHHHhc
Q psy15216 8 PIDPRVVDKMIPYLRVQ--FGNPASRNHIYGWTAEKAIEKARNEVAQLI----YA--DPR-EIIWTSGATESNNLAIKGA 78 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~--~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~----g~--~~~-~Iv~t~g~T~al~~~~~~l 78 (2602)
++++.+.+++.+.+... ..++.. ....++|+++++++ |. +++ +|++|+|+++++.+++.++
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~Y~~~----------~G~~~lr~~ia~~~~~~~~~~~~~~~~vi~t~G~~~~l~~~~~~~ 111 (383)
T TIGR03540 42 PTPKHIVEALCKAAENPENHRYPSY----------EGMLAYRQAVADWYKRRFGVELDPETEVLSLIGSKEGIAHIPLAF 111 (383)
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCCC----------CCCHHHHHHHHHHHHHhhCCCCCCCCeEEECCCcHHHHHHHHHHh
Confidence 45777888888776431 122221 11345566666654 44 455 6999999999999999998
Q ss_pred ccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCC--CCccChHHHHhhccCCceEEEEecccCccccccc--
Q psy15216 79 AHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP-- 154 (2602)
Q Consensus 79 ~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~-- 154 (2602)
. ++||.|++++|+|+.+...++.+ |++++.++.++ ++.+|++++++.+.++++++++++||||||.+++
T Consensus 112 ~----~~gd~vlv~~P~y~~~~~~~~~~---G~~v~~v~~~~~~g~~~d~~~l~~~~~~~~~~v~i~~P~NPtG~~~~~~ 184 (383)
T TIGR03540 112 V----NPGDIVLVPDPGYPVYRIGTLFA---GGEPYEMPLKEENGFLPDFDAIPEDIAKKAKLMFINYPNNPTGAVAPLK 184 (383)
T ss_pred C----CCCCEEEEeCCCCcchHHHHHhc---CCEEEEEecCcccCCccCHHHHHhhccccceEEEEeCCCCCcCccCCHH
Confidence 7 89999999999999988776665 99999999864 3557999999999889999999999999999999
Q ss_pred -HHHHHHHHHhcCCEEEEecccccc----cccccCCC----CCccEEEeccccccCCCC--cEEEEEecCCCCcccceec
Q psy15216 155 -ILEIGELCRSKGVIFHCDAAQAVG----KIDINIQN----YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIH 223 (2602)
Q Consensus 155 -l~~I~~la~~~g~~livD~a~a~g----~~~~dl~~----~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~ 223 (2602)
+++|+++|++||+++|+|++|... ..+..+.. ....+++.|++|.+|++| +||++.++++++.+.....
T Consensus 185 ~~~~i~~~a~~~~~~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~i~~~~l~~~~~~~~~ 264 (383)
T TIGR03540 185 FFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDGAKDVGIEFHSLSKTYNMTGWRIGMAVGNADLIAGLGKVKT 264 (383)
T ss_pred HHHHHHHHHHHcCEEEEEecchhhhccCCCCCcCcccCCCcccCEEEEEecccccCCccceeeEEeCCHHHHHHHHHHHH
Confidence 677888999999999999998632 11222211 123477889999999999 9999998887766654321
Q ss_pred CCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEc-ccC
Q psy15216 224 GGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN-FIE 302 (2602)
Q Consensus 224 g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~-~~~ 302 (2602)
. ....++.+...++..+++....+.++.++++.++++.+.+.|++ . ++.+..+.. ...+++.++ ..+
T Consensus 265 ------~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~-~-~~~~~~~~~---~~~~~~~l~~~~~ 332 (383)
T TIGR03540 265 ------N-VDSGVFQAIQYAAIAALNGPQDVVKEIRKIYQRRRDLLLEALKK-I-GIDVEKPKA---TFYVWVPVPEGYT 332 (383)
T ss_pred ------h-cccCCChHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHh-C-CCEecCCCc---ceEEEEECCCCCC
Confidence 1 11223333444455666533455677788888999999999987 3 676654422 122333343 345
Q ss_pred hhHHHHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHH
Q psy15216 303 GESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK 367 (2602)
Q Consensus 303 ~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~ 367 (2602)
..++...+ +||.+++|..|... ..+++||+++ .+++++...++.|+
T Consensus 333 ~~~~~~~ll~~~gi~v~~g~~f~~~-----------------~~~~~Ris~~--~~~~~l~~~l~~l~ 381 (383)
T TIGR03540 333 SAEFAARLLEETGVVVTPGVGFGEY-----------------GEGYIRISLT--VPDERLEEAVARIK 381 (383)
T ss_pred HHHHHHHHHHHCCEEEecchhhCcc-----------------CCCeEEEEec--CCHHHHHHHHHHHh
Confidence 66777664 59999999876421 1378999998 36778888777775
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation. |
| >KOG0257|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=3e-22 Score=237.20 Aligned_cols=326 Identities=18% Similarity=0.180 Sum_probs=233.0
Q ss_pred CCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCC---CCCcEEEeCCHHHHHHHHHHhhhhhhc
Q psy15216 1403 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA---DPREIIWTSGATESNNLAIKGAAHFYK 1479 (2602)
Q Consensus 1403 ~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~---~~~~iv~t~gaT~al~~al~~l~~~~~ 1479 (2602)
.+.|..+.+++.+...+...+ .|..+++..++.+.+++++++++|. ..++|++|.|+.+++..++++++
T Consensus 43 ~~~P~fv~ea~~~~~~~~~~~----qYt~~~G~p~L~~aL~k~~se~~~~~~~~~~eVlVT~GA~~ai~~~~~~l~---- 114 (420)
T KOG0257|consen 43 FPPPKFVTEAAKNAAKEPSTN----QYTRGYGLPQLRKALAKAYSEFYGGLLDPDDEVLVTAGANEAISSALLGLL---- 114 (420)
T ss_pred CCCcHHHHHHHHHHhccchhc----cccccCCchHHHHHHHHHHHHHhccccCCcccEEEecCchHHHHHHHHHHc----
Confidence 478889999999998764211 1233445567788888999998875 44569999999999999999998
Q ss_pred cCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccC--------CCCCcChhHHHhhccCCceEEEEeccccccccccC-
Q psy15216 1480 KRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK--------NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP- 1550 (2602)
Q Consensus 1480 ~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~--------~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~- 1550 (2602)
++||+|++.+|.|++|.....++ |.++++|+.. +++.+|.++++.+++++||+|++++||||||.+.+
T Consensus 115 ~~GDeVii~eP~fd~Y~~~~~ma---G~tpv~v~~~~~~g~~~s~~~~~D~~~le~~~t~kTk~Ii~ntPhNPtGkvfsR 191 (420)
T KOG0257|consen 115 NPGDEVIVFEPFFDCYIPQVVMA---GGTPVFVPLKPKEGNVSSSDWTLDPEELESKITEKTKAIILNTPHNPTGKVFSR 191 (420)
T ss_pred CCCCEEEEecCcchhhhhHHhhc---CCcceeeccccccccccCccccCChHHHHhhccCCccEEEEeCCCCCcCcccCH
Confidence 89999999999999999988888 9999999876 35779999999999999999999999999999999
Q ss_pred --hHHHHHHhhhcCCEEEEeccccc----Ccccc---cCC-CCCccEEEEccccccCCCc--eEEEEEecCCCCcccccc
Q psy15216 1551 --ILEIGELCRSKGVIFHCDAAQAV----GKIDI---NIQ-NYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQI 1618 (2602)
Q Consensus 1551 --l~~I~~ia~~~gi~vivD~a~~~----g~~~~---~l~-~~~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~ 1618 (2602)
|++|+++|++||+++|.|+++.. |...+ .+. .+...+-++|++|.||++| +||++.++.++..+.+..
T Consensus 192 eeLe~ia~l~~k~~~lvisDevYe~~v~d~~~h~r~aslPgm~ertitvgS~gKtf~~TGWrlGW~igp~~L~~~~~~vh 271 (420)
T KOG0257|consen 192 EELERIAELCKKHGLLVISDEVYEWLVYDGNKHIRIASLPGMYERTITVGSFGKTFGVTGWRLGWAIGPKHLYSALFPVH 271 (420)
T ss_pred HHHHHHHHHHHHCCEEEEEhhHhHHHhhCCCcceeeecCCchhheEEEeccccceeeeeeeeeeeeechHHhhhhHHHHh
Confidence 88999999999999999999743 32111 111 1235677889999999999 999999777776666543
Q ss_pred ccCCccccCCCCCcchhHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceE
Q psy15216 1619 HGGGHEYGLRSGTLATHQIVGMGEAFRLAR--------IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNL 1690 (2602)
Q Consensus 1619 ~g~~~~~~~~~gt~~~~~~~al~~aL~~~~--------~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~ 1690 (2602)
.++.. +.+.+.+.|..+|+.... ....+....+++.++.+.+.|.+ + |+.+.++... ...+.
T Consensus 272 ------~~~~~-~~~Tp~q~A~a~a~~~~~~~~~p~~~y~~~~~~~~y~~krdil~k~L~~-l-g~~v~~p~ga-yyl~a 341 (420)
T KOG0257|consen 272 ------QNFVF-TCPTPIQEASAAAFALELACLQPGGSYFITELVKEYKEKRDILAKALEE-L-GLKVTGPEGA-YYLWA 341 (420)
T ss_pred ------hcccc-ccCcHHHHHHHHHHhhhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHh-c-CCccccCCCc-eEEEE
Confidence 22222 333344444556655322 22455888899999999999998 3 8877765433 22222
Q ss_pred EEEEec--C---------CcHHHHHhc---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHH
Q psy15216 1691 NISFNF--I---------EGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEID 1756 (2602)
Q Consensus 1691 ~~~~~~--~---------~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid 1756 (2602)
.+.++. . +.-.+...+ .|+.+-|++.|+... +.. .+.+.+|+++. -+.+-++
T Consensus 342 dfs~~~~~~~~~~~~~~~~d~~~~~wl~~~~Gv~~IP~saF~s~~----~~~--------~~~~~~r~~~~--k~~~~L~ 407 (420)
T KOG0257|consen 342 DFSLAKSWPFFEEILEKPDDFKFVRWLIKEGGVVVIPPSAFGSRE----HIK--------VAERLVRFCFC--KADETLR 407 (420)
T ss_pred eccccccCCcchhhccCCCceeeehhhhccCcEEEeCchhcCCch----hhH--------HHHHHHHHHHH--hhHHHHH
Confidence 222110 0 111223333 577777777776531 100 11256777765 3667777
Q ss_pred HHHHHHH
Q psy15216 1757 FTIKLLK 1763 (2602)
Q Consensus 1757 ~li~~L~ 1763 (2602)
..++.|+
T Consensus 408 ~a~e~l~ 414 (420)
T KOG0257|consen 408 KAIERLK 414 (420)
T ss_pred HHHHHHh
Confidence 7777776
|
|
| >TIGR03537 DapC succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-21 Score=251.44 Aligned_cols=312 Identities=15% Similarity=0.113 Sum_probs=222.0
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHh----C--CCCC-cEEEeCCHHHHHHHHHHhccc
Q psy15216 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI----Y--ADPR-EIIWTSGATESNNLAIKGAAH 80 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~----g--~~~~-~Iv~t~g~T~al~~~~~~l~~ 80 (2602)
++++.+.+++.+.+.....|++.. ...++|+++++++ | ++++ +|++|+|+++|++.++.++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~Y~~~~----------G~~~lr~aia~~~~~~~g~~~~~~~~Iiit~Gs~~ai~~~~~~~~- 81 (350)
T TIGR03537 13 PTPPFIRKALIDAVPEVSQYPSAL----------GTKALREAISGWFERRFGVKLDPDAQVLPSAGSKEAIFHFPLVFI- 81 (350)
T ss_pred CCCHHHHHHHHHHHhccCCCCCCC----------CCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHHHHHc-
Confidence 457788888887765443344321 1234555565554 6 4676 89999999999999999887
Q ss_pred ccccCC---CEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCC--CCccChHHHHhhccCCceEEEEecccCccccccc-
Q psy15216 81 FYKKRG---KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP- 154 (2602)
Q Consensus 81 ~~~~~g---d~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~- 154 (2602)
++| |.|+++.|.|+.+...++.. |++++.++.++ ++.+|++++++++.++++++++++|+||||.++|
T Consensus 82 ---~~g~~~d~Vl~~~p~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~~ 155 (350)
T TIGR03537 82 ---DPEEDRRRVIFGTPGYPVYERGALFA---GGEPTAVKLKKEDGFLLRLEKVEKSILEETKIVWINYPHNPTGATAPR 155 (350)
T ss_pred ---CCCCCCceEEEcCCCCcchHHHHHhc---CCEEEEcccCcccCCccCHHHHHHhhhhccEEEEEeCCCCCcCcccCH
Confidence 666 69999999999998888766 99999999863 3568999999999989999999999999999999
Q ss_pred --HHHHHHHHHhcCCEEEEecccccc---cccccCCCC--CccEEEeccccccCCCC--cEEEEEecCCCCcccceecCC
Q psy15216 155 --ILEIGELCRSKGVIFHCDAAQAVG---KIDINIQNY--KVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGG 225 (2602)
Q Consensus 155 --l~~I~~la~~~g~~livD~a~a~g---~~~~dl~~~--~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g~ 225 (2602)
+++|.++|++||+++|+|++++.. ..+..+... +..+++.|+||.+|++| +||++.++++.+.+.....
T Consensus 156 ~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~GlRiG~~~~~~~~~~~~~~~~~-- 233 (350)
T TIGR03537 156 SYLKETIAMCREHGIILCSDECYTEIYFGEPPHSALEVGIENVLAFHSLSKRSGMTGYRSGFVAGDEKLISFLRKLRA-- 233 (350)
T ss_pred HHHHHHHHHHHHcCcEEEEeccccccccCCCCCchhhcCcCCEEEEeecccccCCccccceeeecCHHHHHHHHHHHH--
Confidence 778888899999999999998632 212122222 23477789999998888 8999988777766654321
Q ss_pred CccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc-cChh
Q psy15216 226 GHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGE 304 (2602)
Q Consensus 226 ~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~-~~~~ 304 (2602)
.+..+ .+.....++.+++.. ..+..+.+.+++++++.+.+.|.. .++.+..+.. .....+.++. .+..
T Consensus 234 ----~~~~~-~~~~~q~~~~~~l~~-~~~~~~~r~~l~~~~~~~~~~l~~--~g~~~~~~~g---~~~~~~~~~~~~~~~ 302 (350)
T TIGR03537 234 ----NFGVA-SPDFVQAAAKAAWSD-DNHVLERRKIFKRKRDLFIEFFNK--VGLEYLYPDA---TFYLWVKVPSGIDAK 302 (350)
T ss_pred ----hhccC-CCHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHHHHHHHH--CCCcccCCCe---EEEEEEECCCCCCHH
Confidence 11112 222233333344442 245567778888888888888877 3665443321 1122333443 3556
Q ss_pred HHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 305 SLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 305 ~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
++.+.| +||.+.+|..|... ..+++||+++ .++++++.++++|++
T Consensus 303 ~l~~~L~~~gv~v~~g~~f~~~-----------------~~~~~Ri~~~--~~~~~~~~~l~~~~~ 349 (350)
T TIGR03537 303 DYALRLLENGIVVAPGENFGSG-----------------EEGYVRVALV--PTLEECEEALRLWER 349 (350)
T ss_pred HHHHHHHHCCEEEcCchhhCCC-----------------CCCEEEEEec--CCHHHHHHHHHHHhc
Confidence 777776 89999988766431 1378999986 578999999998875
|
Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. |
| >PRK04635 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.7e-22 Score=253.92 Aligned_cols=279 Identities=16% Similarity=0.123 Sum_probs=204.2
Q ss_pred HHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCC-CEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCC
Q psy15216 43 IEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRG-KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN 121 (2602)
Q Consensus 43 ~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~g-d~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~ 121 (2602)
..++|+++|+++|+++++|++|+|+++++.+++.++. ++| |+|++++|.|+.+...++. .|++++.++.+++
T Consensus 62 ~~~Lr~aia~~~~~~~~~I~it~Gs~~~i~~~~~~~~----~~g~d~vlv~~P~y~~y~~~~~~---~g~~v~~v~~~~~ 134 (354)
T PRK04635 62 PPELINAYSAYAGVAPEQILTSRGADEAIELLIRAFC----EPGQDSIACFGPTYGMYAISAET---FNVGVKALPLTAD 134 (354)
T ss_pred HHHHHHHHHHHhCcCHHHEEEeCCHHHHHHHHHHHhc----CCCCCeEEEcCCChHHHHHHHHH---cCCEEEEEecCCC
Confidence 4678999999999999999999999999999999987 788 8999999999887665544 4999999998877
Q ss_pred CccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHh-cCCEEEEeccccccccc---ccCC-CCCccEEEecc
Q psy15216 122 GLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRS-KGVIFHCDAAQAVGKID---INIQ-NYKVDLMSFSA 196 (2602)
Q Consensus 122 ~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~-~g~~livD~a~a~g~~~---~dl~-~~~~D~~~~S~ 196 (2602)
+.+|++.++ .+ +++++|++++||||||.++|.+++.++++. .++++|+|++|...... .++. ....-+++.|+
T Consensus 135 ~~~~~~~l~-~~-~~~~li~i~nP~NPTG~~~~~~~l~~l~~~~~~~~vivDeay~~~~~~~s~~~~~~~~~~~iv~~S~ 212 (354)
T PRK04635 135 YQLPLDYIE-QL-DGAKLVFICNPNNPTGTVIDRADIEQLIEMTPDAIVVVDEAYIEFCPEYSVADLLASYPNLVVLRTL 212 (354)
T ss_pred CCCCHHHHH-hc-cCCCEEEEeCCCCCCCccCCHHHHHHHHHhCCCcEEEEeCchHhhccCcchHHHHhhCCCEEEEech
Confidence 889999987 34 689999999999999999999999999876 37999999998533211 1111 11223677899
Q ss_pred ccccCCCC--cEEEEEecCCCCcccceecCCCccccccccCcchhHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHH
Q psy15216 197 HKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRL-ARIEMKEELKRILFLQKRLYNGL 273 (2602)
Q Consensus 197 ~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~-~~~~~~~~~~~~~~l~~~l~~~L 273 (2602)
||++|++| +||+++++++++.+..... .++.+.+...++.+++.. ....+.+..+++.+.++++.+.|
T Consensus 213 SK~~~l~GlRlG~~i~~~~~~~~l~~~~~---------~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L 283 (354)
T PRK04635 213 SKAFALAGARCGFTLANEELIEILMRVIA---------PYPVPLPVSEIATQALSEAGLARMKFQVLDLNAQGARLQAAL 283 (354)
T ss_pred HHHhhhhHHHHhhhhCCHHHHHHHHhhcC---------CCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888 7999999887776654331 122333333333344431 11234566667788888999999
Q ss_pred hhccCceEEeCCCCCCCCceEEEEEcccChhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecC
Q psy15216 274 MESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIG 351 (2602)
Q Consensus 274 ~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~ 351 (2602)
.+ ++++++..+.. ..+.+.++ +..++.+.| +||.++.... . + .++++|||++
T Consensus 284 ~~-~~~~~~~~~~g----~f~~~~~~--~~~~~~~~l~~~gv~v~~~~~---~-----------~-----~~~~lRis~~ 337 (354)
T PRK04635 284 SM-YGGAKVLEGNG----NYVLAKFD--DVDAVFKALWDAGIVARAYKD---P-----------R-----LANCIRFSFS 337 (354)
T ss_pred Hh-CCCceECCCCC----cEEEEECC--CHHHHHHHHHHCCEEEEECCC---C-----------C-----CCCeEEEEeC
Confidence 87 55676654321 22333333 455565555 7999974321 1 0 1378999987
Q ss_pred CCCCHHHHHHHHHHHHh
Q psy15216 352 RFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 352 ~~~t~edid~li~~L~~ 368 (2602)
+.+|+++++++|++
T Consensus 338 ---~~e~~~~l~~al~~ 351 (354)
T PRK04635 338 ---NRAETDKLIGLIRN 351 (354)
T ss_pred ---CHHHHHHHHHHHHH
Confidence 89999999999985
|
|
| >PRK05957 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.1e-21 Score=252.50 Aligned_cols=320 Identities=16% Similarity=0.154 Sum_probs=229.7
Q ss_pred CCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCC--C-CCcEEEeCCHHHHHHHHHHhhhhhhc
Q psy15216 1403 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA--D-PREIIWTSGATESNNLAIKGAAHFYK 1479 (2602)
Q Consensus 1403 ~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~--~-~~~iv~t~gaT~al~~al~~l~~~~~ 1479 (2602)
.++++.+.+++.+++.... ...|....+..++.+.+++.+++++|. + +++|++|+|+++++..++.++.
T Consensus 39 ~~~~~~~~~a~~~~~~~~~----~~~Y~~~~G~~~lr~~~~~~l~~~~g~~~~~~~~i~~t~G~~~~l~~~~~~~~---- 110 (389)
T PRK05957 39 YPPPPEAIEALNNFLANPE----NHKYQAVQGIPPLLEAITQKLQQDNGIELNNEQAIVVTAGSNMAFMNAILAIT---- 110 (389)
T ss_pred CCCCHHHHHHHHHHHhCCC----CCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCChHHHHHHHHHHhc----
Confidence 4577888999988775321 111222233445677888888888886 3 5689999999999999998876
Q ss_pred cCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccCCceEEEEeccccccccccC---hHHHHH
Q psy15216 1480 KRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIGE 1556 (2602)
Q Consensus 1480 ~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~---l~~I~~ 1556 (2602)
++||+|++++|.|+.+...++. .|++++.++.+.++.+|+++++++++++|++|+++||+||||.++| +++|++
T Consensus 111 ~~gd~Vlv~~P~y~~~~~~~~~---~g~~~~~v~~~~~~~~d~~~l~~~i~~~~klv~~~~p~NPtG~~~~~~~~~~i~~ 187 (389)
T PRK05957 111 DPGDEIILNTPYYFNHEMAITM---AGCQPILVPTDDNYQLQPEAIEQAITPKTRAIVTISPNNPTGVVYPEALLRAVNQ 187 (389)
T ss_pred CCCCEEEEeCCCCcCHHHHHHh---cCCEEEEeecCCCCCcCHHHHHHhcCcCceEEEEeCCCCCCCcCcCHHHHHHHHH
Confidence 7999999999999988665544 4999999998877889999999999999999999999999999999 888999
Q ss_pred HhhhcCCEEEEecccccCc------cc-ccC-CCCCccEEEEccccccCCCc--eEEEEEecCCCCccccccccCCcccc
Q psy15216 1557 LCRSKGVIFHCDAAQAVGK------ID-INI-QNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYG 1626 (2602)
Q Consensus 1557 ia~~~gi~vivD~a~~~g~------~~-~~l-~~~~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~ 1626 (2602)
+|++||+++++|++++... .+ ..+ ......+++.|++|.+|++| +||+++++++++++.... .
T Consensus 188 ~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~~~~~~~~~-------~ 260 (389)
T PRK05957 188 ICAEHGIYHISDEAYEYFTYDGVKHFSPGSIPGSGNHTISLYSLSKAYGFASWRIGYMVIPIHLLEAIKKIQ-------D 260 (389)
T ss_pred HHHHcCcEEEEeccchhccCCCCCccChhhCCCccCcEEEEecchhhccCccceeEEEecCHHHHHHHHHHH-------h
Confidence 9999999999999975211 11 111 11123477889999999888 999999888777765432 1
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcE-EEeCCCCCCCCceEEEEE--e-cCCcHHH
Q psy15216 1627 LRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEI-YINGDMNNRIPHNLNISF--N-FIEGESL 1702 (2602)
Q Consensus 1627 ~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl-~i~~~~~~~~~~~~~~~~--~-~~~~~~~ 1702 (2602)
....+++.....++..+|......+++..+++.++++.+.+.|.+ .+++ .+. ++. ...++++ + ..+..++
T Consensus 261 ~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~-~~~~~~~~-~~~----gg~~~~~~~~~~~~~~~~ 334 (389)
T PRK05957 261 TILICPPVVSQYAALGALQVGKSYCQQHLPEIAQVRQILLKSLGQ-LQDRCTLH-PAN----GAFYCFLKVNTDLNDFEL 334 (389)
T ss_pred hcccCCCcHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHh-cCCCcccc-CCC----eeEEEEEeCCCCCChHHH
Confidence 112233434444444555432234566777788889999999976 5553 322 211 1222332 2 2455567
Q ss_pred HHhc---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1703 LMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1703 ~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
...| +||.+.+|..|... ..+++||+++.. +.++++..+++|.+
T Consensus 335 ~~~l~~~~gv~v~pg~~f~~~-----------------~~~~iRis~~~~-~~~~l~~~~~~l~~ 381 (389)
T PRK05957 335 VKQLIREYRVAVIPGTTFGMK-----------------NGCYLRIAYGAL-QKATAKEGIERLVQ 381 (389)
T ss_pred HHHHHHHCCEEEccchhhCCC-----------------CCCEEEEEEecC-CHHHHHHHHHHHHH
Confidence 6665 69999999887532 126999999754 57888888888875
|
|
| >TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.9e-21 Score=247.92 Aligned_cols=292 Identities=17% Similarity=0.181 Sum_probs=210.0
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccC-
Q psy15216 1437 KAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK- 1515 (2602)
Q Consensus 1437 ~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~- 1515 (2602)
..+.++++.+++++|++ .+++++|+++++..++.++. ++||.|+++.+.|.+.... ++..|++++.++.+
T Consensus 51 ~~~~~~~e~lA~~~g~~--~~~i~~g~~~a~~~~~~~l~----~~gd~Vl~~~~~h~s~~~~---~~~~g~~~~~~~~~~ 121 (370)
T TIGR02539 51 PPIHDFLEDLAEFLGMD--EARVTHGAREGKFAVMHALC----KEGDWVVLDGLAHYTSYVA---AERAGLNVKEVPHTG 121 (370)
T ss_pred hHHHHHHHHHHHHhCCC--ceEEECChHHHHHHHHHHhh----CCCCEEEECCcccHHHHHH---HHHcCCEEEEEecCC
Confidence 35677889999999986 46678999999999999987 8999999999999887644 34459999999876
Q ss_pred -CCCCcChhHHHhhccC-------CceEEEEeccccccccccChHHHHHHhhhcCCEEEEecccccCcccccCCCCCccE
Q psy15216 1516 -NNGLITLSQLEEKICS-------DTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDL 1587 (2602)
Q Consensus 1516 -~~~~id~d~l~~~i~~-------~t~lv~l~~~~n~tG~~~~l~~I~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~ 1587 (2602)
.++.+|+++|++++++ ++++|+++||+||||.+.|+++|.++|++||+++++|++|+.|..+.+...+++|+
T Consensus 122 ~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~~l~~i~~la~~~~~~livDea~~~g~~~~~~~~~~~di 201 (370)
T TIGR02539 122 HPEYKVDPEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPDAGKVAKVCREKGVPLLLNCAYTVGRMPVSAKEIGADF 201 (370)
T ss_pred cccCCcCHHHHHHHHHHhhhccCCCcEEEEEECCCCCCccccCHHHHHHHHHHcCCeEEEECccccCCcCCCHHHcCCCE
Confidence 3577999999999863 68899999999999999999999999999999999999999997676666678999
Q ss_pred EEEccccccCCC-ceEEEEEecCCCCccccccccCCccc-cCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15216 1588 MSFSAHKIYGPK-GIGALYIRRNPRTRIEAQIHGGGHEY-GLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRL 1665 (2602)
Q Consensus 1588 ~v~S~~K~~gp~-G~G~l~~~~~~~~~l~~~~~g~~~~~-~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l 1665 (2602)
++.|+||++|+. ++||+++++++++.+......+.... .+..++.......++.+++......++...+. .+.++++
T Consensus 202 ~v~s~sK~~~~~g~~G~l~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~l~~~~~~-~~~~~~l 280 (370)
T TIGR02539 202 IVGSGHKSMAASGPCGVLGMSEEWEDIVLRKSRYSPVKEVELLGCTSRGAPIVTMMASFPHVVERVKRWDEE-VKKTRWF 280 (370)
T ss_pred EEeeCcccccCCCCEEEEEECHHHHhhhcccccCCccceeeeecccccccHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 999999977643 38999999988877655332221111 11123333334545555665433334333333 4445689
Q ss_pred HHHHhhcCCcEEEeCCCCCCCCceEEEEEecC---------CcHHHHHhc--CCEE-EccccccCCCCCChhHHHHHcCC
Q psy15216 1666 YNGLMESIEEIYINGDMNNRIPHNLNISFNFI---------EGESLLMAI--KDIA-VSSGSACTSASLEPSYVLRALGC 1733 (2602)
Q Consensus 1666 ~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~---------~~~~~~~~L--~gI~-v~~g~~~~~~~~~~~~~~~~~~~ 1733 (2602)
+++|.+ .|+.++..... ..++..+.++.. ....+...| +||. ++++.
T Consensus 281 ~~~L~~--~g~~~~~~~~s-~t~~v~~~~~~~~~~~~~~~~~~~~~~~~L~e~GI~~ir~~~------------------ 339 (370)
T TIGR02539 281 VAELED--IGFIQLGQKPK-EHDLVKFETPGFHEIAQKHKRRGYFLYEELKKRGIHGIRSGQ------------------ 339 (370)
T ss_pred HHHHHh--CCcEEEccCCC-cCceEEEECCchhHHhhhhccccHHHHHHHHhCCCccccCCc------------------
Confidence 999988 47776432111 234444444422 122455555 6775 43211
Q ss_pred CccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1734 NDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1734 ~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
.+++|+++. ..|++|+++++++|++.
T Consensus 340 -----~~~iRis~~-~~t~e~i~~l~~~L~~~ 365 (370)
T TIGR02539 340 -----TKYFKLSVY-GLTKEQVEYVVDSFEEI 365 (370)
T ss_pred -----ceEEEEEec-CCCHHHHHHHHHHHHHH
Confidence 168999974 35999999999999873
|
Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA. |
| >KOG0257|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=6e-22 Score=234.68 Aligned_cols=323 Identities=19% Similarity=0.204 Sum_probs=233.1
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCC---CCCcEEEeCCHHHHHHHHHHhccccccc
Q psy15216 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA---DPREIIWTSGATESNNLAIKGAAHFYKK 84 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~---~~~~Iv~t~g~T~al~~~~~~l~~~~~~ 84 (2602)
|+|..|.+++.+.+.....+ .|..++...++.+.++++++.++|. +.++|++|.|+.+++..++.++. +
T Consensus 44 ~~P~fv~ea~~~~~~~~~~~----qYt~~~G~p~L~~aL~k~~se~~~~~~~~~~eVlVT~GA~~ai~~~~~~l~----~ 115 (420)
T KOG0257|consen 44 PPPKFVTEAAKNAAKEPSTN----QYTRGYGLPQLRKALAKAYSEFYGGLLDPDDEVLVTAGANEAISSALLGLL----N 115 (420)
T ss_pred CCcHHHHHHHHHHhccchhc----cccccCCchHHHHHHHHHHHHHhccccCCcccEEEecCchHHHHHHHHHHc----C
Confidence 88999999999988653111 2344566678889999999998876 44579999999999999999998 8
Q ss_pred CCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccC--------CCCccChHHHHhhccCCceEEEEecccCccccccc--
Q psy15216 85 RGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK--------NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP-- 154 (2602)
Q Consensus 85 ~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~--------~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~-- 154 (2602)
+||+|++.+|.|++|.....++ |.++++++.. +++.+|.+.++.+++++||+|++++||||||.+.+
T Consensus 116 ~GDeVii~eP~fd~Y~~~~~ma---G~tpv~v~~~~~~g~~~s~~~~~D~~~le~~~t~kTk~Ii~ntPhNPtGkvfsRe 192 (420)
T KOG0257|consen 116 PGDEVIVFEPFFDCYIPQVVMA---GGTPVFVPLKPKEGNVSSSDWTLDPEELESKITEKTKAIILNTPHNPTGKVFSRE 192 (420)
T ss_pred CCCEEEEecCcchhhhhHHhhc---CCcceeeccccccccccCccccCChHHHHhhccCCccEEEEeCCCCCcCcccCHH
Confidence 9999999999999999999988 9999999876 35789999999999999999999999999999999
Q ss_pred -HHHHHHHHHhcCCEEEEeccccc----ccccccCCC----CCccEEEeccccccCCCC--cEEEEEecCCCCcccceec
Q psy15216 155 -ILEIGELCRSKGVIFHCDAAQAV----GKIDINIQN----YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIH 223 (2602)
Q Consensus 155 -l~~I~~la~~~g~~livD~a~a~----g~~~~dl~~----~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~ 223 (2602)
+++|+++|++||+++|.|++|.. |...+.+.. +..-+-++|++|.||.+| +||++.++.++..+.+..
T Consensus 193 eLe~ia~l~~k~~~lvisDevYe~~v~d~~~h~r~aslPgm~ertitvgS~gKtf~~TGWrlGW~igp~~L~~~~~~vh- 271 (420)
T KOG0257|consen 193 ELERIAELCKKHGLLVISDEVYEWLVYDGNKHIRIASLPGMYERTITVGSFGKTFGVTGWRLGWAIGPKHLYSALFPVH- 271 (420)
T ss_pred HHHHHHHHHHHCCEEEEEhhHhHHHhhCCCcceeeecCCchhheEEEeccccceeeeeeeeeeeeechHHhhhhHHHHh-
Confidence 77899999999999999999753 221122211 123577889999999999 999999877777766554
Q ss_pred CCCccccccccCcchhHHHHHHHHHHHHH--------HhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEE
Q psy15216 224 GGGHEYGLRSGTLATHQIVGMGEAFRLAR--------IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLN 295 (2602)
Q Consensus 224 g~~~~~~~~~gt~~~~~~~al~~al~~~~--------~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~ 295 (2602)
.++.. +.+.+...|..+|+.... .........+++.++.+.+.|.+ + |+.+..|.... ...
T Consensus 272 -----~~~~~-~~~Tp~q~A~a~a~~~~~~~~~p~~~y~~~~~~~~y~~krdil~k~L~~-l-g~~v~~p~gay---yl~ 340 (420)
T KOG0257|consen 272 -----QNFVF-TCPTPIQEASAAAFALELACLQPGGSYFITELVKEYKEKRDILAKALEE-L-GLKVTGPEGAY---YLW 340 (420)
T ss_pred -----hcccc-ccCcHHHHHHHHHHhhhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHh-c-CCccccCCCce---EEE
Confidence 22222 233333333434554222 22445888999999999999988 3 88888765432 223
Q ss_pred EEEccc-------------ChhHHHHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHH
Q psy15216 296 ISFNFI-------------EGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEI 359 (2602)
Q Consensus 296 ~~~~~~-------------~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edi 359 (2602)
..|+.. +...+...+ .|+.+-|++.+.... +. . .+.+.+|+++. -+++-+
T Consensus 341 adfs~~~~~~~~~~~~~~~~d~~~~~wl~~~~Gv~~IP~saF~s~~----~~----~----~~~~~~r~~~~--k~~~~L 406 (420)
T KOG0257|consen 341 ADFSLAKSWPFFEEILEKPDDFKFVRWLIKEGGVVVIPPSAFGSRE----HI----K----VAERLVRFCFC--KADETL 406 (420)
T ss_pred EeccccccCCcchhhccCCCceeeehhhhccCcEEEeCchhcCCch----hh----H----HHHHHHHHHHH--hhHHHH
Confidence 333310 111233333 466666666665430 11 0 11256777765 366677
Q ss_pred HHHHHHHH
Q psy15216 360 DFTIKLLK 367 (2602)
Q Consensus 360 d~li~~L~ 367 (2602)
+..++.|+
T Consensus 407 ~~a~e~l~ 414 (420)
T KOG0257|consen 407 RKAIERLK 414 (420)
T ss_pred HHHHHHHh
Confidence 77777776
|
|
| >cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I) | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-21 Score=252.24 Aligned_cols=317 Identities=20% Similarity=0.201 Sum_probs=229.1
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCC
Q psy15216 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK 87 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd 87 (2602)
+.+|.+++++.+++.. ++++.. .+.......+..+++++.+++++|++ ..++++++++++..++.++. ++||
T Consensus 15 ~~~~~v~~a~~~~~~~-~~~~~~-~~~~~~~~~~~~~~l~~~la~~~~~~--~~iv~~sg~~a~~~~~~~~~----~~gd 86 (349)
T cd06454 15 ANHPEVIEAAKEALDK-YGVGAG-GSRLISGTSDLHEELEEELAEFHGKE--AALVFSSGYAANDGVLSTLA----GKGD 86 (349)
T ss_pred CCCHHHHHHHHHHHHH-hCCCCC-CcCeecCCchHHHHHHHHHHHHhCCC--CEEEeccHHHHHHHHHHHhc----CCCC
Confidence 4478999999999975 333221 12222233567889999999999975 34556666788888887776 7999
Q ss_pred EEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccC-----CceEEEEecccCcccccccHHHHHHHH
Q psy15216 88 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS-----DTILVSVMLVNNEIGVIQPILEIGELC 162 (2602)
Q Consensus 88 ~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~-----~tklv~i~~~~npTG~~~~l~~I~~la 162 (2602)
+|+++.++|+++...+.. .|++++.++. +|++++++++++ +++++++++++||||.+.|+++|+++|
T Consensus 87 ~Vl~~~~~~~~~~~~~~~---~g~~~~~~~~-----~~~~~le~~i~~~~~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~ 158 (349)
T cd06454 87 LIISDSLNHASIIDGIRL---SGAKKRIFKH-----NDMEDLEKLLREARRPYGKKLIVTEGVYSMDGDIAPLPELVDLA 158 (349)
T ss_pred EEEEehhhhHHHHHHHHH---cCCceEEecC-----CCHHHHHHHHHHhhccCCCeEEEEeccccCCCCccCHHHHHHHH
Confidence 999999999997766544 4888887752 477888888863 578999999999999999999999999
Q ss_pred HhcCCEEEEeccccccccc--------ccCCCCCccEEEeccccccCCCCcEEEEEecCCCCcccceecCCCcccccccc
Q psy15216 163 RSKGVIFHCDAAQAVGKID--------INIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSG 234 (2602)
Q Consensus 163 ~~~g~~livD~a~a~g~~~--------~dl~~~~~D~~~~S~~K~~Gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~g 234 (2602)
+++|+++|+|++|+.|..+ ++....+.|++++|+||.+|++| |+++.++++.+.+.+.... ....+
T Consensus 159 ~~~~~~livD~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g-G~i~~~~~~~~~~~~~~~~-----~~~~~ 232 (349)
T cd06454 159 KKYGAILFVDEAHSVGVYGPHGRGVEEFGGLTDDVDIIMGTLGKAFGAVG-GYIAGSKELIDYLRSYARG-----FIFST 232 (349)
T ss_pred HHcCCEEEEEccccccccCCCCCChhhhccccccCcEEEeechhhhcccC-CEEECCHHHHHHHHHhchh-----hhccC
Confidence 9999999999999876542 22234567999999999888887 8888887665554432210 01124
Q ss_pred CcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEc-ccChhHHHHHh--C
Q psy15216 235 TLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN-FIEGESLLMAI--K 311 (2602)
Q Consensus 235 t~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~L--~ 311 (2602)
+.+...++++.++++.... .+...+++.++++++.+.|.+ .++.+..++.. ....+.++ ..+..++.+.| +
T Consensus 233 ~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~l~~~l~~--~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~~L~~~ 306 (349)
T cd06454 233 SLPPAVAAAALAALEVLQG-GPERRERLQENVRYLRRGLKE--LGFPVGGSPSH---IIPPLIGDDPAKAVAFSDALLER 306 (349)
T ss_pred CCCHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHh--cCCcccCCCCC---cEEEEeCCChHHHHHHHHHHHhC
Confidence 5667777778888885544 467788999999999999977 36665544221 12222222 23456677666 6
Q ss_pred CeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 312 DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 312 gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
||.++++...... ...+++|++++.+++++|+++++++|++
T Consensus 307 gI~~~~~~~~~~~----------------~~~~~iRi~~~~~~~~~~i~~~~~~l~~ 347 (349)
T cd06454 307 GIYVQAIRYPTVP----------------RGTARLRISLSAAHTKEDIDRLLEALKE 347 (349)
T ss_pred CceEEEecCCccC----------------CCCCeEEEEEeCCCCHHHHHHHHHHHHH
Confidence 8888764221110 1137899999999999999999999985
|
The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. |
| >PLN02187 rooty/superroot1 | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.1e-21 Score=255.25 Aligned_cols=316 Identities=16% Similarity=0.166 Sum_probs=220.9
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHh------CCCCCcEEEeCCHHHHHHHHHHhcccc
Q psy15216 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI------YADPREIIWTSGATESNNLAIKGAAHF 81 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~------g~~~~~Iv~t~g~T~al~~~~~~l~~~ 81 (2602)
++|+.+.+++.+.+.....+ +|.......++|+++|+++ ++++++|++|+|+++||.+++.++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~--------~Y~~~~G~~~lR~aiA~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~-- 152 (462)
T PLN02187 83 RTCIEAEDAVVDVLRSGKGN--------SYGPGAGILPARRAVADYMNRDLPHKLTPEDIFLTAGCNQGIEIVFESLA-- 152 (462)
T ss_pred CCCHHHHHHHHHHHhCCCCC--------CCCCCCChHHHHHHHHHHHHHhcCCCCCcccEEEeCCHHHHHHHHHHHhc--
Confidence 45678888888887642111 1111123566788888877 3588999999999999999999998
Q ss_pred cccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccC--CCCccChHHHHhhccCCceEEEEecccCccccccc---HH
Q psy15216 82 YKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK--NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---IL 156 (2602)
Q Consensus 82 ~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~--~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~---l~ 156 (2602)
+|||+|++++|.|+.+...+... |++++.++.. .++.+|+++|+++++++++++++++||||||.+++ ++
T Consensus 153 --~pGd~Vlv~~P~y~~y~~~~~~~---g~~~~~~~l~~~~~~~~d~~~l~~~~~~~~~~v~i~nP~NPTG~v~s~e~l~ 227 (462)
T PLN02187 153 --RPNANILLPRPGFPHYDARAAYS---GLEVRKFDLLPEKEWEIDLEGIEAIADENTVAMVVINPNNPCGNVYSHDHLK 227 (462)
T ss_pred --CCCCEEEEeCCCCccHHHHHHHc---CCEEEEEeCccccCCccCHHHHHHhcCCCcEEEEEeCCCCCCCCccCHHHHH
Confidence 89999999999999987665544 9999999874 35789999999999999999999999999999999 66
Q ss_pred HHHHHHHhcCCEEEEeccccccc---cc-ccCC---CCCccEEEeccccccCCCC--cEEEEEe-cC-C---CCccccee
Q psy15216 157 EIGELCRSKGVIFHCDAAQAVGK---ID-INIQ---NYKVDLMSFSAHKIYGPKG--IGALYIR-RN-P---RTRIEAQI 222 (2602)
Q Consensus 157 ~I~~la~~~g~~livD~a~a~g~---~~-~dl~---~~~~D~~~~S~~K~~Gp~G--~G~l~~~-~~-~---~~~l~~~~ 222 (2602)
+|+++|++||+++|+|++|+.-. .+ ..+. ....-+++.|++|.|+.+| +||++++ ++ . ++.+....
T Consensus 228 ~i~~~a~~~~i~iI~DE~Y~~l~f~~~~~~s~~~~~~~~~vi~l~SfSK~f~~pGlRiG~~v~~~p~~~~~~~~~~~~~~ 307 (462)
T PLN02187 228 KVAETARKLGIMVISDEVYDRTIFGDNPFVSMGKFASIVPVLTLAGISKGWVVPGWKIGWIALNDPEGVFETTKVLQSIK 307 (462)
T ss_pred HHHHHHHHCCCEEEEeccccccccCCCCceeHHHhccCCcEEEEecchhhcCCccceeEEEEecCchhHHHHHHHHHHHH
Confidence 78888999999999999986421 11 1121 1112477789999999888 8999984 32 1 12222211
Q ss_pred cCCCccccccc-cCcchhHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc
Q psy15216 223 HGGGHEYGLRS-GTLATHQIVGMGEAFRL-ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF 300 (2602)
Q Consensus 223 ~g~~~~~~~~~-gt~~~~~~~al~~al~~-~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~ 300 (2602)
. .+.. ..++.....++.++|+. ...++++.++.+++.++++.+.|.+ ++++.....+.. ..+..+.++.
T Consensus 308 ~------~~~~~~~~s~~~Q~a~~~~L~~~~~~~l~~~~~~l~~~r~~l~~~L~~-~~~~~~~~~P~g--g~fl~~~l~~ 378 (462)
T PLN02187 308 Q------NLDVTPDPATIIQAALPAILEKADKNFFAKKNKILKHNVDLVCDRLKD-IPCVVCPKKPES--CTYLLTKLEL 378 (462)
T ss_pred H------hccccCCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhh-CCCCcCCCCCCE--eEEEEeecCh
Confidence 1 0111 13455666666677752 3456788888999999999999987 554322211111 1122222221
Q ss_pred -----c-ChhHHHHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 301 -----I-EGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 301 -----~-~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
. +..++...+ +||.+.+|..|.. .+++||+++. .++.++..+++|.+
T Consensus 379 ~~~~~~~~~~~~~~~ll~~~gV~v~pG~~fg~-------------------~~~iRis~~~--~~e~l~~al~rL~~ 434 (462)
T PLN02187 379 SLMDNIKDDIDFCVKLAREENLVFLPGDALGL-------------------KNWMRITIGV--EAHMLEDALERLKG 434 (462)
T ss_pred hhCCCCCCHHHHHHHHHhhCCEEEECccccCC-------------------CCeEEEEeCC--CHHHHHHHHHHHHH
Confidence 1 233444443 7999999987632 2899999984 67888999998885
|
|
| >COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.5e-21 Score=242.20 Aligned_cols=316 Identities=19% Similarity=0.213 Sum_probs=244.5
Q ss_pred eeeeccC--CCCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhC-CCCCcEEEeCCHHHHHHHH
Q psy15216 1394 TNIVFKD--ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIY-ADPREIIWTSGATESNNLA 1470 (2602)
Q Consensus 1394 ~~v~L~~--~~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g-~~~~~iv~t~gaT~al~~a 1470 (2602)
..+.|+. +..++++.+.+++.+.++....||+. ...++++++++++| .++++|++++|+++.+..+
T Consensus 23 ~~i~LssNenP~gp~~~~~~~~~~~~~~~~rYPd~-----------~~~~l~~a~a~~~~~~~~~~V~~gnGsde~i~~l 91 (356)
T COG0079 23 GIIKLSSNENPYGPPPKVIEAIRAALDKLNRYPDP-----------DYRELRAALAEYYGVVDPENVLVGNGSDELIELL 91 (356)
T ss_pred cceeecCCCCCCCCCHHHHHHHHHHHHhhccCCCC-----------cHHHHHHHHHHHhCCCCcceEEEcCChHHHHHHH
Confidence 3456653 33456788999999988877778875 25789999999999 7888999999999999999
Q ss_pred HHhhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccCCceEEEEeccccccccccC
Q psy15216 1471 IKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP 1550 (2602)
Q Consensus 1471 l~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~ 1550 (2602)
++++. .+||.|+++.|+|+.|...++.. |++++.++..+ +.+|++.+.+++.+++++|++++||||||.+++
T Consensus 92 ~~~~~----~~gd~vl~~~Ptf~~Y~~~a~~~---g~~~~~v~~~~-~~~d~~~~~~~~~~~~~lv~i~nPNNPTG~~~~ 163 (356)
T COG0079 92 VRAFV----EPGDTVLIPEPTFSMYEIAAQLA---GAEVVKVPLKE-FRLDLDAILAAIRDKTKLVFLCNPNNPTGTLLP 163 (356)
T ss_pred HHHhh----cCCCEEEEcCCChHHHHHHHHhc---CCeEEEecccc-cccCHHHHHHhhhcCCCEEEEeCCCCCCCCCCC
Confidence 99998 89999999999999988777666 99999999888 889999999999999999999999999999999
Q ss_pred hHHHHHHhhhc--CCEEEEeccccc--CcccccCCCCCc-cEEEEccccccCCCc--eEEEEEecCCCCccccccccCCc
Q psy15216 1551 ILEIGELCRSK--GVIFHCDAAQAV--GKIDINIQNYKV-DLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGH 1623 (2602)
Q Consensus 1551 l~~I~~ia~~~--gi~vivD~a~~~--g~~~~~l~~~~~-D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~~g~~~ 1623 (2602)
.++|.+++... +.+|++|+|+.- +...+.+-.... -+++.||+|.||+.| +||++.++++++.+.+..
T Consensus 164 ~~~l~~l~~~~~~~~~vVvDEAY~eF~~~~~~~l~~~~~nlivlRTfSKa~gLAGlRlGy~ia~~~~i~~l~~vr----- 238 (356)
T COG0079 164 REELRALLEALPEGGLVVIDEAYIEFSPESSLELLKYPPNLIVLRTFSKAFGLAGLRVGYAIANPELIAALNKVR----- 238 (356)
T ss_pred HHHHHHHHHhCCCCcEEEEeCchhhcCCchhhhhccCCCCEEEEEecHHhhhcchhceeeccCCHHHHHHHHHhc-----
Confidence 88888887754 789999999752 211122212222 477779999999999 899999999888876554
Q ss_pred cccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEE-EeCCCCCCCCceEEEEEecCCcHHH
Q psy15216 1624 EYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIY-INGDMNNRIPHNLNISFNFIEGESL 1702 (2602)
Q Consensus 1624 ~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~-i~~~~~~~~~~~~~~~~~~~~~~~~ 1702 (2602)
.+++.+.++..+..++++.. +.+++...+....++++.+.|.. ++ +. +.+. . .++..+.++......+
T Consensus 239 ----~p~~v~~~a~~aa~aal~~~-~~~~~~~~~~~~~r~rl~~~l~~-~~-~~~v~pS-~---aNFvlv~~~~~~~~~l 307 (356)
T COG0079 239 ----PPFNVSSPALAAAIAALRDA-DYLEESVERIREERERLYAALKA-LG-LFGVFPS-Q---ANFVLVRVPDAEAAAL 307 (356)
T ss_pred ----CCCCCCHHHHHHHHHHcccH-HHHHHHHHHHHHHHHHHHHHHHh-CC-CCeecCC-C---CcEEEEECCCccHHHH
Confidence 23466777777776777643 66888899999999999999987 43 43 4322 1 2333444432113356
Q ss_pred HHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1703 LMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1703 ~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
...| +||.+|.... .. ...+++||+++ |+++.++++++|++.
T Consensus 308 ~~~L~~~giivR~~~~-~~-----------------~~~~~lRitvg---t~een~~ll~AL~~~ 351 (356)
T COG0079 308 AEALLKKGILVRDCSS-VG-----------------LLPGYLRITVG---TPEENDRLLAALREV 351 (356)
T ss_pred HHHHHHCCEEEEeCCC-CC-----------------CCCCeEEEEeC---CHHHHHHHHHHHHHH
Confidence 6666 8999996543 11 11379999999 899999999999973
|
|
| >PRK06108 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.4e-21 Score=252.92 Aligned_cols=320 Identities=16% Similarity=0.132 Sum_probs=227.0
Q ss_pred CCCCCHHHHHHHHHHHhhcc-CCCCCccchhHHHHHHHHHHHHHHHHHHhC--CCCCcEEEeCCHHHHHHHHHHhhhhhh
Q psy15216 1402 TTPIDPRVVDKMIPYLRVQF-GNPASRNHIYGWTAEKAIEKARNEVAQLIY--ADPREIIWTSGATESNNLAIKGAAHFY 1478 (2602)
Q Consensus 1402 ~~~~~~~v~eal~~~l~~~~-~np~~~~~~~~~~~~~~~~~lr~~ia~~~g--~~~~~iv~t~gaT~al~~al~~l~~~~ 1478 (2602)
+.+.++.+.+++.+.+.+.. .++.. .+..++.+.+.+.+.+++| +++++|++|+|+++|+..++.++.
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~Y~~~------~G~~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~--- 105 (382)
T PRK06108 35 DLPTPDFIRDAAAAALADGETFYTHN------LGIPELREALARYVSRLHGVATPPERIAVTSSGVQALMLAAQALV--- 105 (382)
T ss_pred CCCCCHHHHHHHHHHHhcCCCCCCCC------CCCHHHHHHHHHHHHHHhCCCcCcceEEEeCChHHHHHHHHHHhc---
Confidence 34667888999888776421 12221 1122233333444444447 678899999999999999999886
Q ss_pred ccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCC---CCCcChhHHHhhccCCceEEEEeccccccccccC---hH
Q psy15216 1479 KKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN---NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---IL 1552 (2602)
Q Consensus 1479 ~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~---~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~---l~ 1552 (2602)
++||+|++++|.|+.+...+..+ |++++.++.+. ++.+|++++++.++++++++++++|+||||.++| ++
T Consensus 106 -~~gd~vl~~~p~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~p~NPtG~~~~~~~~~ 181 (382)
T PRK06108 106 -GPGDEVVAVTPLWPNLVAAPKIL---GARVVCVPLDFGGGGWTLDLDRLLAAITPRTRALFINSPNNPTGWTASRDDLR 181 (382)
T ss_pred -CCCCEEEEeCCCccchHHHHHHC---CCEEEEeeCCCCCCCccCCHHHHHHhcCccceEEEEECCCCCCCcccCHHHHH
Confidence 89999999999999987666554 99999999864 3468999999999999999999999999999997 67
Q ss_pred HHHHHhhhcCCEEEEecccccCccc--------ccCCC-CCccEEEEccccccCCCc--eEEEEEecCCCCccccccccC
Q psy15216 1553 EIGELCRSKGVIFHCDAAQAVGKID--------INIQN-YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGG 1621 (2602)
Q Consensus 1553 ~I~~ia~~~gi~vivD~a~~~g~~~--------~~l~~-~~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~~g~ 1621 (2602)
+|+++|++||+++|+|++|+..... .++.. .+..+++.|+||.+|++| +||+++++++++.+.....
T Consensus 182 ~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~~~~~~~~~~~~~~~~~-- 259 (382)
T PRK06108 182 AILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIAEPDDRIIFVNSFSKNWAMTGWRLGWLVAPPALGQVLEKLIE-- 259 (382)
T ss_pred HHHHHHHHCCcEEEEehhhhhhccCCCCCCCCHhhcCCCcCCEEEEeechhhccCcccceeeeeCCHHHHHHHHHHHH--
Confidence 8899999999999999997643211 12221 124578889999888777 8999998877766654321
Q ss_pred CccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEec-CCcH
Q psy15216 1622 GHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGE 1700 (2602)
Q Consensus 1622 ~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~-~~~~ 1700 (2602)
+....++...+.+...+|......+++.+++++++++++++.|.+ .+++.+..+.. .....+.++. .+..
T Consensus 260 -----~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~p~~---g~~~~~~l~~~~~~~ 330 (382)
T PRK06108 260 -----YNTSCVAQFVQRAAVAALDEGEDFVAELVARLRRSRDHLVDALRA-LPGVEVAKPDG---AMYAFFRIPGVTDSL 330 (382)
T ss_pred -----hcccCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHh-CCCCcccCCCe---eEEEEEeCCCCCCHH
Confidence 112234444455555666533345677888899999999999977 56766553311 1111222332 2445
Q ss_pred HHHHhc---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1701 SLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1701 ~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
++...| +||.+.+|..|... ..+++|+|++. +.++++.++++|++
T Consensus 331 ~~~~~ll~~~gV~v~pg~~f~~~-----------------~~~~~Ris~~~--~~~~l~~~l~~l~~ 378 (382)
T PRK06108 331 ALAKRLVDEAGLGLAPGTAFGPG-----------------GEGFLRWCFAR--DPARLDEAVERLRR 378 (382)
T ss_pred HHHHHHHHhCCEEEeCchhhCCC-----------------CCCEEEEEecC--CHHHHHHHHHHHHH
Confidence 666654 69999998876431 13789999997 88999999999986
|
|
| >PRK03158 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-21 Score=251.23 Aligned_cols=303 Identities=18% Similarity=0.139 Sum_probs=227.1
Q ss_pred CCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCC
Q psy15216 1403 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRG 1482 (2602)
Q Consensus 1403 ~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~g 1482 (2602)
...++.+.+++.+.+.....+|.. ...++|+++++++++++++|++|+|+++++..++.++. ++|
T Consensus 41 ~~~~~~v~~a~~~~~~~~~~~p~~-----------g~~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~~~----~~g 105 (359)
T PRK03158 41 YGPSPKVKEAIAAHLDELALYPDG-----------YAPELRTKVAKHLGVDEEQLLFGAGLDEVIQMISRALL----NPG 105 (359)
T ss_pred CCCCHHHHHHHHHHHHHhhcCCCC-----------cHHHHHHHHHHHhCCCHHHEEECCCHHHHHHHHHHHHh----CCC
Confidence 345778899988877654333332 25789999999999988999999999999999998886 799
Q ss_pred CEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccCCceEEEEeccccccccccChHHHHHHhhh--
Q psy15216 1483 KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRS-- 1560 (2602)
Q Consensus 1483 d~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~~ia~~-- 1560 (2602)
|+|++++|+|+.+...+... |+++..++.+ ++.+|+++++++++++++++++++|+||||.++|.++|.++++.
T Consensus 106 d~v~~~~p~y~~~~~~~~~~---g~~~~~~~~~-~~~~d~~~l~~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~~~~~~~ 181 (359)
T PRK03158 106 TNTVMAEPTFSQYRHNAIIE---GAEVREVPLK-DGGHDLEAMLKAIDEQTKIVWICNPNNPTGTYVNHEELLSFLESVP 181 (359)
T ss_pred CEEEEcCCCHHHHHHHHHHc---CCeEEEEecC-CCCcCHHHHHHhcCCCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC
Confidence 99999999999877665544 9999999987 67799999999999999999999999999999999998888876
Q ss_pred cCCEEEEecccccCcc----cc--c-CCCCCccEEEEccccccCCCc--eEEEEEecCCCCccccccccCCccccCCCCC
Q psy15216 1561 KGVIFHCDAAQAVGKI----DI--N-IQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGT 1631 (2602)
Q Consensus 1561 ~gi~vivD~a~~~g~~----~~--~-l~~~~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt 1631 (2602)
+|+++|+|++|..... +. . +...+..+++.|++|.+|++| +||+++++++++.+..... ...
T Consensus 182 ~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~v~~~~~~~~~~~~~~---------~~~ 252 (359)
T PRK03158 182 SHVLVVLDEAYYEYVTAEDYPDTLPLLEKYENLIVLRTFSKAYGLAALRVGYGIASEELIEKLNIARP---------PFN 252 (359)
T ss_pred CCcEEEEECchHhhcCCcccccHHHHHHhcCCEEEEEechHhhcCcchhhehhcCCHHHHHHHHHhcC---------CCC
Confidence 5999999999853221 11 1 112345688889999998888 6999998877766654321 123
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEec-CCcHHHHHhc--CC
Q psy15216 1632 LATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGESLLMAI--KD 1708 (2602)
Q Consensus 1632 ~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~L--~g 1708 (2602)
.+...+.++..++.. ....+...+..++.++++.+.|.+ . ++.+.. +. ..++++.. .+..++...| +|
T Consensus 253 ~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~l~~-~-~~~~~~-~~-----g~~i~~~~~~~~~~~~~~l~~~g 323 (359)
T PRK03158 253 TTRIAQYAAIAALED-QAFLKECVEKNAEGLEQYYAFCKE-Y-GLFYYP-SQ-----TNFIFVDTGRDANELFEALLKKG 323 (359)
T ss_pred CCHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHH-C-CCeeCC-Cc-----CcEEEEECCCCHHHHHHHHHHCC
Confidence 455566666566652 233556666677788888888877 3 555542 22 12233332 3455666665 79
Q ss_pred EEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1709 IAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1709 I~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
|.+++|..|..+ +++||+++ +.+++++++++|++
T Consensus 324 v~v~~g~~f~~~-------------------~~iRi~~~---~~~~~~~l~~al~~ 357 (359)
T PRK03158 324 YIVRSGAALGFP-------------------TGVRITIG---LKEQNDKIIELLKE 357 (359)
T ss_pred eEEeeCCCCCCC-------------------CeEEEecC---CHHHHHHHHHHHHH
Confidence 999998876432 78999988 88999999999986
|
|
| >PLN00145 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.9e-21 Score=252.61 Aligned_cols=316 Identities=15% Similarity=0.118 Sum_probs=223.4
Q ss_pred CCCCHHHHHHHHHHHhhhc--CCCCCCCcchhhhHHHHHHHHHHHHHHHhC------CCCCcEEEeCCHHHHHHHHHHhc
Q psy15216 7 TPIDPRVVDKMIPYLRVQF--GNPASRNHIYGWTAEKAIEKARNEVAQLIY------ADPREIIWTSGATESNNLAIKGA 78 (2602)
Q Consensus 7 ~~~p~~v~~a~~~~l~~~~--~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g------~~~~~Iv~t~g~T~al~~~~~~l 78 (2602)
.++|+.+.+++.+++.... .|+. .....++|++++++++ +++++|++|+|+++|+++++.++
T Consensus 68 ~~~~~~~~~a~~~al~~~~~~~Y~~----------~~G~~~lr~aia~~~~~~~~~~~~~~~v~it~G~~~al~l~~~~l 137 (430)
T PLN00145 68 FRTAPEAEDAVAAALRSGKYNSYST----------CVGLLPARRAIAEYLSRDLPYELSTDDIYLTAGCAQAIEIIMSVL 137 (430)
T ss_pred CCCCHHHHHHHHHHHHcCcCCCCCC----------CccCHHHHHHHHHHHhhccCCCCChhhEEEeCCHHHHHHHHHHHh
Confidence 3667889999998886421 1221 1235677888888773 36789999999999999999998
Q ss_pred ccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccC--CCCccChHHHHhhccCCceEEEEecccCccccccc--
Q psy15216 79 AHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK--NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP-- 154 (2602)
Q Consensus 79 ~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~--~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~-- 154 (2602)
. ++||+|++++|.|+.+....... |++++.+++. .++.+|++++++++++++++++++||+||||.++|
T Consensus 138 ~----~~Gd~Vlv~~P~y~~y~~~~~~~---g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~P~NPtG~v~~~~ 210 (430)
T PLN00145 138 A----QPGANILLPRPGYPLYEARAVFS---GLEVRHFDLLPERGWEVDLEGVEALADENTVAMVIINPNNPCGSVYSYE 210 (430)
T ss_pred c----CCCCEEEEcCCCCccHHHHHHHc---CCEEEEeeCCcccCCcCCHHHHHHHhCcCceEEEEeCCCCCCCCCCCHH
Confidence 7 89999999999999987766555 8999998864 35789999999999999999999999999999999
Q ss_pred -HHHHHHHHHhcCCEEEEeccccccc---cc-ccC---CCCCccEEEeccccccCCCC--cEEEEEe--cCCCCcc---c
Q psy15216 155 -ILEIGELCRSKGVIFHCDAAQAVGK---ID-INI---QNYKVDLMSFSAHKIYGPKG--IGALYIR--RNPRTRI---E 219 (2602)
Q Consensus 155 -l~~I~~la~~~g~~livD~a~a~g~---~~-~dl---~~~~~D~~~~S~~K~~Gp~G--~G~l~~~--~~~~~~l---~ 219 (2602)
+++|+++|+++|+++|+|++|+... .+ ..+ .....-+++.|++|.|+++| +||++++ +.+++.. .
T Consensus 211 ~l~~i~~~a~~~~i~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pG~RlG~iv~~~~~~~~~~~~~~~ 290 (430)
T PLN00145 211 HLAKIAETARKLGILVIADEVYDHLTFGSKPFVPMGVFGEVAPVLTLGSISKRWVVPGWRLGWIATCDPNGILKETKVVD 290 (430)
T ss_pred HHHHHHHHHHHcCCEEEEeccchhhccCCCCccchhhhcccCcEEEEeccccccCCCCeeEEEEEEecchhhhhhhHHHH
Confidence 6778888999999999999986321 11 111 22224578889999999888 8999984 2222221 1
Q ss_pred ceecCCCccccccccCcchhHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEE
Q psy15216 220 AQIHGGGHEYGLRSGTLATHQIVGMGEAFRL-ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISF 298 (2602)
Q Consensus 220 ~~~~g~~~~~~~~~gt~~~~~~~al~~al~~-~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~ 298 (2602)
.... ... ....++.+...++..+|+. ...++++.++++++.++.+.+.|+. ++++.....++. ...+.+.+
T Consensus 291 ~~~~----~~~-~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~-~~g~~~~~~P~g--a~y~~v~l 362 (430)
T PLN00145 291 SIRN----YLN-ISTDPATFVQGAIPQIIANTKEEFFTKTLGLLKETADICYEKIKE-IKCITCPHKPEG--SMFVMVKL 362 (430)
T ss_pred HHHH----Hhc-ccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCcCCCe--eeEEEecc
Confidence 1100 000 1113445555556566653 2456788888999999999999977 667654322221 12222223
Q ss_pred cc------cChhHHHHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 299 NF------IEGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 299 ~~------~~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
+. .+..+++..| ++|.+.+|..|.. .+++||+++. +.++++..+++|++
T Consensus 363 ~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~fg~-------------------~~~lRis~~~--~~~~l~~al~rl~~ 420 (430)
T PLN00145 363 DLSCLSGIKDDMDFCCKLAKEESVVVLPGSALGM-------------------KNWLRITFAI--DPPSLEDGLERLKS 420 (430)
T ss_pred ChhhcCCCCCHHHHHHHHHHhCCEEEeCccccCC-------------------CCeEEEEeCC--CHHHHHHHHHHHHH
Confidence 31 1344566554 6899999887643 2899999983 67888888888875
|
|
| >PRK09105 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.7e-21 Score=248.59 Aligned_cols=309 Identities=12% Similarity=0.106 Sum_probs=224.9
Q ss_pred eeeccC--CCCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHH
Q psy15216 1395 NIVFKD--ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIK 1472 (2602)
Q Consensus 1395 ~v~L~~--~~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~ 1472 (2602)
.++|+. +..++++.+.+++.+.+.....+|.. ...++|+.+++++|+++++|++|+|+++++..++.
T Consensus 45 ~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~Y~~~-----------~~~~Lr~aia~~~~v~~e~I~it~Gs~~ai~~~~~ 113 (370)
T PRK09105 45 AVFLNANECPLGPSPAARDAAARSAALSGRYDLE-----------LEDDLRTLFAAQEGLPADHVMAYAGSSEPLNYAVL 113 (370)
T ss_pred cEEecCCCCCCCCCHHHHHHHHHHHHHhcCCCCc-----------hHHHHHHHHHHHhCcChhhEEEcCChHHHHHHHHH
Confidence 355653 33467889999998877542222221 15679999999999999999999999999999999
Q ss_pred hhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccCCceEEEEeccccccccccChH
Q psy15216 1473 GAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPIL 1552 (2602)
Q Consensus 1473 ~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~ 1552 (2602)
++. ++||+|++++|+|+.+....+.. |++++.++.+.++.+|++++++. .++++++++++|+||||.++|.+
T Consensus 114 ~l~----~~gd~Vli~~P~y~~~~~~~~~~---g~~~~~v~~~~~~~~d~~~l~~~-~~~~~~v~l~nP~NPTG~~~~~~ 185 (370)
T PRK09105 114 AFT----SPTAGLVTADPTYEAGWRAADAQ---GAPVAKVPLRADGAHDVKAMLAA-DPNAGLIYICNPNNPTGTVTPRA 185 (370)
T ss_pred HHc----CCCCEEEEeCCChHHHHHHHHHc---CCeEEEecCCCCCCCCHHHHHhc-CCCCCEEEEeCCCCCCCcCcCHH
Confidence 987 89999999999999987665554 99999999887788999999887 57799999999999999999988
Q ss_pred HHHHHhhh--cCCEEEEeccccc-Cccc--ccCCCCCcc-EEEEccccccCCCc--eEEEEEecCCCCccccccccCCcc
Q psy15216 1553 EIGELCRS--KGVIFHCDAAQAV-GKID--INIQNYKVD-LMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHE 1624 (2602)
Q Consensus 1553 ~I~~ia~~--~gi~vivD~a~~~-g~~~--~~l~~~~~D-~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~~g~~~~ 1624 (2602)
+|.++++. +++++|+|++|.. ...+ .++.+...+ +++.||+|.+|++| +||++.++++++.+.+..
T Consensus 186 ~l~~l~~~~~~~~~lIvDEaY~~f~~~~s~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~v~~~~~i~~l~~~~------ 259 (370)
T PRK09105 186 DIEWLLANKPAGSVLLVDEAYIHFSDAPSVVDLVAQRKDLIVLRTFSKLYGMAGMRLGLAAARPDLLAKLARFG------ 259 (370)
T ss_pred HHHHHHHhCCCCcEEEEECchHHhccCcchHHHHhhCCCEEEEecccHhhcCCccceeeeecCHHHHHHHHhcC------
Confidence 88777653 5899999999842 1111 222222334 55669999999999 999999887776665431
Q ss_pred ccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEec-CCcHHHH
Q psy15216 1625 YGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGESLL 1703 (2602)
Q Consensus 1625 ~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~-~~~~~~~ 1703 (2602)
....+...+.+...+|.. ...++..++++.++++++.+.|.+ .++.+..+ . ..++.+.. .+..++.
T Consensus 260 ----~~~~~~~~~~aa~~~L~~-~~~~~~~~~~~~~~r~~l~~~L~~--~g~~~~~~-~-----~~f~~~~~~~~~~~l~ 326 (370)
T PRK09105 260 ----HNPLPVPAAAAGLASLRD-PKLVPQRRAENAAVREDTIAWLKK--KGYKCTPS-Q-----ANCFMVDVKRPAKAVA 326 (370)
T ss_pred ----CCCcCHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHHHHH--CCCCcCCC-C-----CcEEEEeCCCCHHHHH
Confidence 123444455555455543 344677778888999999999987 36554432 1 12222332 3556676
Q ss_pred Hhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1704 MAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1704 ~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
..| +||.++ ..|.. ..+++|++++ +.+++++++++|++
T Consensus 327 ~~L~~~gI~v~--~~~~~------------------~~~~~Ris~~---~~~~~~~l~~al~~ 366 (370)
T PRK09105 327 DAMAKQGVFIG--RSWPI------------------WPNWVRVTVG---SEEEMAAFRSAFAK 366 (370)
T ss_pred HHHHHCCcEEe--cCCCC------------------CCCeEEEEcC---CHHHHHHHHHHHHH
Confidence 666 788883 22311 1279999988 68999999999986
|
|
| >PRK09276 LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.4e-21 Score=252.53 Aligned_cols=313 Identities=14% Similarity=0.116 Sum_probs=222.0
Q ss_pred CCCHHHHHHHHHHHhhh--cCCCCCCCcchhhhHHHHHHHHHHHHHHHh----CC--CCC-cEEEeCCHHHHHHHHHHhc
Q psy15216 8 PIDPRVVDKMIPYLRVQ--FGNPASRNHIYGWTAEKAIEKARNEVAQLI----YA--DPR-EIIWTSGATESNNLAIKGA 78 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~--~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~----g~--~~~-~Iv~t~g~T~al~~~~~~l 78 (2602)
++++.+.+++.+.+... ..++.. ....++|+++++++ |. +++ +|++|+|+++|++.++.++
T Consensus 44 ~~~~~~~~~~~~~~~~~~~~~Y~~~----------~G~~~lr~aia~~~~~~~g~~~~~~~~ii~t~G~~~~i~~~~~~~ 113 (385)
T PRK09276 44 PTPDHIIEAMCKAVEDPENHQYPSY----------EGMLEFRKAVADWYKRRFGVELDPETEVISLIGSKEGIAHIPLAF 113 (385)
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCCC----------CCcHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHHHHHHHHh
Confidence 56778888888877531 122221 12345666666665 54 555 5999999999999999998
Q ss_pred ccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCC--CCccChHHHHhhccCCceEEEEecccCcccccccH-
Q psy15216 79 AHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPI- 155 (2602)
Q Consensus 79 ~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l- 155 (2602)
. ++||.|++++|.|+.+...++.. |++++.++.++ ++.+|++++++.+.+++++|++++||||||.++|.
T Consensus 114 ~----~~gd~Vl~~~P~y~~~~~~~~~~---g~~~~~v~~~~~~g~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~ 186 (385)
T PRK09276 114 V----NPGDVVLVPDPGYPVYKIGTIFA---GGEPYFMPLKEENGFLPDLDAIPEDVAKKAKLMFINYPNNPTGAVADLE 186 (385)
T ss_pred C----CCCCEEEEcCCCCcChHHHHHHc---CCEEEEEecCCCCCCcCCHHHHHHhccccceEEEEeCCCCCCCCCCCHH
Confidence 7 89999999999999987776655 99999998864 35689999999998899999999999999999995
Q ss_pred --HHHHHHHHhcCCEEEEeccccccc----ccccC---CC-CCccEEEeccccccCCCC--cEEEEEecCCCCcccceec
Q psy15216 156 --LEIGELCRSKGVIFHCDAAQAVGK----IDINI---QN-YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIH 223 (2602)
Q Consensus 156 --~~I~~la~~~g~~livD~a~a~g~----~~~dl---~~-~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~ 223 (2602)
++|+++|++||+++|+|++|.... .+..+ .. .+..+++.|++|.+|++| +||+++++++++.+.....
T Consensus 187 ~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~i~~~~l~~~~~~~~~ 266 (385)
T PRK09276 187 FFEEVVDFAKKYDIIVCHDAAYSEIAYDGYKPPSFLEVPGAKDVGIEFHSLSKTYNMTGWRIGFAVGNADLIAGLGKVKS 266 (385)
T ss_pred HHHHHHHHHHHCCcEEEEecchhheecCCCCCCChhccCCCcCCEEEEecchhhcCCcchhheeeeCCHHHHHHHHHHHh
Confidence 678888999999999999986321 11121 11 123578889999999999 9999999887776654321
Q ss_pred CCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc-cC
Q psy15216 224 GGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IE 302 (2602)
Q Consensus 224 g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~-~~ 302 (2602)
....+.+.+...++..++.....+.++.+++++++++++.+.|++ . ++.+..+.. ....++.++. .+
T Consensus 267 -------~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-~~~~~~~~~---~~~~~v~~~~~~~ 334 (385)
T PRK09276 267 -------NVDSGVFQAIQEAGIAALNGPQEVVEELRKIYQERRDILVEGLRK-L-GLEVEPPKA---TFYVWAPVPKGYT 334 (385)
T ss_pred -------hccCCCCHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHh-C-CCcccCCCc---ceEEEEECCCCCC
Confidence 011223333444444555433455677788888899999999987 3 666553322 1223333332 35
Q ss_pred hhHHHHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 303 GESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 303 ~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
..++...| +||.+++|..|... ..+++||+++. +++++...++.|.+
T Consensus 335 ~~~l~~~ll~~~gi~v~~g~~f~~~-----------------~~~~~Ris~~~--~~~~l~~~l~~l~~ 384 (385)
T PRK09276 335 SAEFATLLLDKAGVVVTPGNGFGEY-----------------GEGYFRIALTV--PDERIEEAVERIKK 384 (385)
T ss_pred HHHHHHHHHHhCCEEECCchhhCCC-----------------CCCeEEEEeCC--CHHHHHHHHHHHhh
Confidence 66666665 59999998766431 13799999983 67788888777753
|
|
| >PRK08361 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-21 Score=254.62 Aligned_cols=314 Identities=14% Similarity=0.134 Sum_probs=225.7
Q ss_pred CCCHHHHHHHHHHHhhhc-CCCCCCCcchhhhHHHHHHHHHHHHHHHh----C--CCCCcEEEeCCHHHHHHHHHHhccc
Q psy15216 8 PIDPRVVDKMIPYLRVQF-GNPASRNHIYGWTAEKAIEKARNEVAQLI----Y--ADPREIIWTSGATESNNLAIKGAAH 80 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~-~~p~~~~~~~~~~~~~~~~~~r~~lA~~~----g--~~~~~Iv~t~g~T~al~~~~~~l~~ 80 (2602)
++++.+.+++.+.+.... .+.. .....++|+++|+++ | +++++|++|+|+++|+.+++.++.
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~Y~~----------~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~- 114 (391)
T PRK08361 46 DTPKNIKEAAKRALDEGWTHYTP----------NAGIPELREAIAEYYKKFYGVDVDVDNVIVTAGAYEATYLAFESLL- 114 (391)
T ss_pred CCCHHHHHHHHHHHhcCCCCCCC----------CCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCChHHHHHHHHHHhc-
Confidence 356778888887765321 1111 112355667777765 4 577899999999999999999887
Q ss_pred ccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCC--CCccChHHHHhhccCCceEEEEecccCccccccc---H
Q psy15216 81 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---I 155 (2602)
Q Consensus 81 ~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~---l 155 (2602)
++||.|++++|+|+++...+... |++++.+++++ ++.+|++++++.++++++++++++|+||||.++| +
T Consensus 115 ---~~g~~Vlv~~p~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~v~i~~p~NPtG~~~~~~~~ 188 (391)
T PRK08361 115 ---EEGDEVIIPDPAFVCYVEDAKIA---EAKPIRIPLREENEFQPDPDELLELITKRTRMIVINYPNNPTGATLDKEVA 188 (391)
T ss_pred ---CCCCEEEEcCCCCcccHHHHHHc---CCEEEEEecCCccCCCCCHHHHHHhcccccEEEEEeCCCCCCCcCcCHHHH
Confidence 79999999999999987666554 99999999865 3569999999999999999999999999999999 7
Q ss_pred HHHHHHHHhcCCEEEEeccccccc----ccccCCC--CCccEEEeccccccCCCC--cEEEEEecCCCCcccceecCCCc
Q psy15216 156 LEIGELCRSKGVIFHCDAAQAVGK----IDINIQN--YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGH 227 (2602)
Q Consensus 156 ~~I~~la~~~g~~livD~a~a~g~----~~~dl~~--~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g~~~ 227 (2602)
++|+++|+++++++|+|++++... ....+.. ...++++.|+||.+|++| +||+++++++++.+....
T Consensus 189 ~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~GlRiG~~~~~~~~~~~~~~~~----- 263 (391)
T PRK08361 189 KAIADIAEDYNIYILSDEPYEHFLYEGAKHYPMIKYAPDNTILANSFSKTFAMTGWRLGFVIAPEQVIKDMIKLH----- 263 (391)
T ss_pred HHHHHHHHHcCeEEEEEcccccceeCCCCCCCHhhcCCCCEEEEecCchhcCCcHhhhhhhccCHHHHHHHHHHH-----
Confidence 888999999999999999985321 1111111 235688899999999888 899999887766654321
Q ss_pred cccccccCcchhHHHHHHHHHHHH--HHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc--cCh
Q psy15216 228 EYGLRSGTLATHQIVGMGEAFRLA--RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF--IEG 303 (2602)
Q Consensus 228 ~~~~~~gt~~~~~~~al~~al~~~--~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~--~~~ 303 (2602)
.+..++.+.....++..+|+.. ..++++.+++++++++.+.+.|++ ++++.+..+... ...++.++. .+.
T Consensus 264 --~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~-~~~~~~~~p~g~---~~~~~~l~~~~~~~ 337 (391)
T PRK08361 264 --AYIIGNVASFVQIAGIEALRSKESWKAVEEMRKEYNERRKLVLKRLKE-MPHIKVFEPKGA---FYVFANIDETGMSS 337 (391)
T ss_pred --hhhccCCChHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHh-CCCCeecCCCEE---EEEEEECCCCCCCH
Confidence 1112234444444444555421 134678888889999999999987 677776544321 122333442 356
Q ss_pred hHHHHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 304 ESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 304 ~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
.++...| +||.+.+|..|... ..+++||+++. ++++++..++.|++
T Consensus 338 ~~l~~~l~~~~gv~v~pg~~f~~~-----------------~~~~iRi~~~~--~~~~l~~al~~l~~ 386 (391)
T PRK08361 338 EDFAEWLLEKARVVVIPGTAFGKA-----------------GEGYIRISYAT--SKEKLIEAMERMEK 386 (391)
T ss_pred HHHHHHHHHhCCEEEcCchhhCCC-----------------CCCEEEEEecC--CHHHHHHHHHHHHH
Confidence 6776665 59999988766321 13789999984 67788888888875
|
|
| >PRK07908 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.6e-21 Score=248.33 Aligned_cols=301 Identities=17% Similarity=0.150 Sum_probs=216.2
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCC
Q psy15216 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK 87 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd 87 (2602)
++|+.+++++.+.+.....||.. ....++|+++++++|+++++|++|+|+++|+.+++. + .+|
T Consensus 35 ~~~~~~~~~~~~~~~~~~~Y~~~----------~g~~~lr~aia~~~~~~~~~I~it~Ga~~al~~~~~-l-----~~~- 97 (349)
T PRK07908 35 TPPEWLRERLAARLGDLAAYPST----------EDERRARAAVAARHGRTPDEVLLLAGAAEGFALLAR-L-----RPR- 97 (349)
T ss_pred CCCHHHHHHHHHHhhHhhcCCCc----------cchHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHh-c-----CCC-
Confidence 57888999999887654444432 135678999999999999999999999999999887 3 355
Q ss_pred EEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHhcCC
Q psy15216 88 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGV 167 (2602)
Q Consensus 88 ~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~~g~ 167 (2602)
.+++..|.|+.+.. .++..|.+++.++.+.++.+|++.+ ++++++++++||+||||.++|.++|.++|++ +.
T Consensus 98 ~viv~~P~y~~~~~---~~~~~G~~i~~v~~~~~~~~d~~~l----~~~~~~i~l~np~NPTG~~~~~~~l~~l~~~-~~ 169 (349)
T PRK07908 98 RAAVVHPSFTEPEA---ALRAAGIPVHRVVLDPPFRLDPAAV----PDDADLVVIGNPTNPTSVLHPAEQLLALRRP-GR 169 (349)
T ss_pred eEEEeCCCChHHHH---HHHHcCCEEEeeccCcccCcChhHh----ccCCCEEEEcCCCCCCCCCcCHHHHHHHHhc-CC
Confidence 45566666666544 4445599999999887677888754 5678999999999999999999999999964 78
Q ss_pred EEEEeccccc--ccccccCCC--CCccEEEeccccccCCCC--cEEEEEecCCCCcccceecCCCccccccccCcchhHH
Q psy15216 168 IFHCDAAQAV--GKIDINIQN--YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQI 241 (2602)
Q Consensus 168 ~livD~a~a~--g~~~~dl~~--~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~ 241 (2602)
++|+|++|+. ...+..+.. .+..+++.|+||.+|++| +||+++++++++.+.+... .++.+....
T Consensus 170 ~iIvDe~y~~~~~~~~~~l~~~~~~~~i~i~S~SK~~~l~GlRiG~~~~~~~~~~~~~~~~~---------~~~~~~~~~ 240 (349)
T PRK07908 170 ILVVDEAFADAVPGEPESLAGDDLPGVLVLRSLTKTWSLAGLRVGYALGAPDVLARLTRGRA---------HWPVGTLQL 240 (349)
T ss_pred EEEEECcchhhccCCccccccccCCCEEEEeecccccCCccceeeeeecCHHHHHHHHhcCC---------CCCccHHHH
Confidence 8999999852 112223321 222466679999999888 6999999887777765432 123334444
Q ss_pred HHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcccChhHHHHHh--CCeEEccc
Q psy15216 242 VGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDIAVSSG 318 (2602)
Q Consensus 242 ~al~~al~-~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~v~~g 318 (2602)
.++.+.++ ....++++.++++.++++++.+.|.+ . ++++..++. ..++++...+...+...| +||.+++|
T Consensus 241 ~a~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~-~-~~~~~~p~~-----g~~~~~~~~~~~~~~~~l~~~gI~v~~g 313 (349)
T PRK07908 241 EAIAACCAPRAVAEAAADAARLAADRAEMVAGLRA-V-GARVVDPAA-----APFVLVRVPDAELLRKRLRERGIAVRRG 313 (349)
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHh-C-CcEeccCCC-----ceEEEEECCcHHHHHHHHHhCCEEEEEC
Confidence 44434333 12245677888899999999999987 4 777665432 233444333345555555 79999998
Q ss_pred ccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 319 SACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 319 ~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
..|... ..+++|||++ +++++++++++|++.
T Consensus 314 ~~f~~~-----------------~~~~vRis~~---~~~~~~~l~~al~~~ 344 (349)
T PRK07908 314 DTFPGL-----------------DPDYLRLAVR---PRAEVPVLVQALAEI 344 (349)
T ss_pred CCCCCC-----------------CCCeEEEEeC---CCccHHHHHHHHHHH
Confidence 766321 1379999997 789999999999863
|
|
| >PLN00175 aminotransferase family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.5e-21 Score=250.04 Aligned_cols=316 Identities=16% Similarity=0.152 Sum_probs=226.9
Q ss_pred CCCHHHHHHHHHHHhhh-cCCCCCCCcchhhhHHHHHHHHHHHHHHHh----C--CCCC-cEEEeCCHHHHHHHHHHhcc
Q psy15216 8 PIDPRVVDKMIPYLRVQ-FGNPASRNHIYGWTAEKAIEKARNEVAQLI----Y--ADPR-EIIWTSGATESNNLAIKGAA 79 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~-~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~----g--~~~~-~Iv~t~g~T~al~~~~~~l~ 79 (2602)
++|+.+.+++.+.+... ..|+. .. ...++|+++++++ | ++++ +|++|+|+++|+.+++.++.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~Y~~------~~----G~~~Lr~aia~~~~~~~g~~~~~~~~I~vt~G~~~al~~~~~~l~ 136 (413)
T PLN00175 67 DGPDFVKEAAIQAIRDGKNQYAR------GF----GVPELNSAIAERFKKDTGLVVDPEKEVTVTSGCTEAIAATILGLI 136 (413)
T ss_pred CCCHHHHHHHHHHHhcCCCCcCC------CC----CCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCHHHHHHHHHHHhC
Confidence 45778888888887641 12221 11 2344555555544 5 3566 69999999999999999887
Q ss_pred cccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCC-CCccChHHHHhhccCCceEEEEecccCccccccc---H
Q psy15216 80 HFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---I 155 (2602)
Q Consensus 80 ~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~-~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~---l 155 (2602)
++||+|++++|.|+.+...++.. |++++.++.++ ++.+|++.|+++++++++++++++|+||||.+++ +
T Consensus 137 ----~~gd~Vlv~~P~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~~~~l~~~~~~~~k~i~i~~p~NPtG~~~s~~~l 209 (413)
T PLN00175 137 ----NPGDEVILFAPFYDSYEATLSMA---GAKIKTVTLRPPDFAVPEDELKAAFTSKTRAILINTPHNPTGKMFTREEL 209 (413)
T ss_pred ----CCCCEEEEeCCCchhHHHHHHHc---CCEEEEEECCcccCCCCHHHHHHhcCcCceEEEecCCCCCCCcCCCHHHH
Confidence 89999999999999987776665 99999999864 5789999999999999999999999999999997 5
Q ss_pred HHHHHHHHhcCCEEEEecccccccc---cc---cCCC-CCccEEEeccccccCCCC--cEEEEEecCCCCcccceecCCC
Q psy15216 156 LEIGELCRSKGVIFHCDAAQAVGKI---DI---NIQN-YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGG 226 (2602)
Q Consensus 156 ~~I~~la~~~g~~livD~a~a~g~~---~~---dl~~-~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g~~ 226 (2602)
++|+++|++|++++|+|++|..... +. .+.. .+..+++.|++|.||.+| +||+++++++++.+....
T Consensus 210 ~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~s~~~~~~~~~~vi~i~SfSK~~~~~G~RiG~~v~~~~l~~~l~~~~---- 285 (413)
T PLN00175 210 ELIASLCKENDVLAFTDEVYDKLAFEGDHISMASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAH---- 285 (413)
T ss_pred HHHHHHHHHcCcEEEEecccCccccCCcccChhhCCCCcCcEEEEecchhhccCcchheeeeEeCHHHHHHHHHHH----
Confidence 6688889999999999999864321 11 1211 234588889999998888 899999987776664332
Q ss_pred ccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEc--cc-Ch
Q psy15216 227 HEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN--FI-EG 303 (2602)
Q Consensus 227 ~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~--~~-~~ 303 (2602)
.....+.+.+...++..+|+....++++.++++.+.++.+.+.|.+ .++.+..+... ...++.++ +. +.
T Consensus 286 ---~~~~~~~s~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~--~g~~~~~p~g~---~f~~~~~~~~~~~~~ 357 (413)
T PLN00175 286 ---SFLTFATATPMQWAAVAALRAPESYYEELKRDYSAKKDILVEGLKE--VGFKVYPSSGT---YFVMVDHTPFGFEND 357 (413)
T ss_pred ---hhccCCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH--CCCeecCCCee---EEEEEeccccCCCCH
Confidence 1112345555556566777633456788888999999999999987 36666543221 12222222 22 34
Q ss_pred hHHHHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 304 ESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 304 ~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
.++...| +||.+.||..|... .....+++||+++. ++++++..+++|++
T Consensus 358 ~~~~~~ll~~~gV~v~pg~~F~~~--------------~~~~~~~iRls~~~--~~e~l~~~~~rL~~ 409 (413)
T PLN00175 358 IAFCEYLIEEVGVAAIPPSVFYLN--------------PEDGKNLVRFAFCK--DEETLRAAVERMKT 409 (413)
T ss_pred HHHHHHHHHhCCEEEeCchHhCCC--------------CCCCCCEEEEEEcC--CHHHHHHHHHHHHH
Confidence 5676665 59999998766421 01123789999983 78999999999985
|
|
| >TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.5e-21 Score=252.18 Aligned_cols=316 Identities=16% Similarity=0.178 Sum_probs=228.9
Q ss_pred CCCHHHHHHHHHHHhhh-cCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCC
Q psy15216 8 PIDPRVVDKMIPYLRVQ-FGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRG 86 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~-~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~g 86 (2602)
+.+|.+.+++.+++... ++++.+ .+..|. .+...++|+.+|+++|.+ ++++++|+++|++.++.++. ++|
T Consensus 52 ~~~~~v~~~~~~~~~~~~~~~~~s-~~~~G~--~~~~~~le~~ia~~~g~~--~~ii~~~~~~a~~~~~~~l~----~~g 122 (393)
T TIGR01822 52 SSHPDLIQAAKDALDEHGFGMSSV-RFICGT--QDIHKELEAKIAAFLGTE--DTILYASCFDANGGLFETLL----GAE 122 (393)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCc-CcccCC--hHHHHHHHHHHHHHhCCC--cEEEECchHHHHHHHHHHhC----CCC
Confidence 45788999999988763 455544 233332 456789999999999974 56666888999999998886 899
Q ss_pred CEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccC------CceEEEEecccCcccccccHHHHHH
Q psy15216 87 KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS------DTILVSVMLVNNEIGVIQPILEIGE 160 (2602)
Q Consensus 87 d~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~------~tklv~i~~~~npTG~~~~l~~I~~ 160 (2602)
|+|++++++|+++...+..+ +.....+. .+|++++++++++ +|++|++.+++|+||.+.|+++|++
T Consensus 123 d~vi~~~~~~~s~~~~~~~~---~~~~~~~~-----~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~tG~~~~l~~i~~ 194 (393)
T TIGR01822 123 DAIISDALNHASIIDGVRLC---KAKRYRYA-----NNDMADLEAQLKEARAAGARHRLIATDGVFSMDGVIAPLDEICD 194 (393)
T ss_pred CEEEEeccccHHHHHHHHhc---CCceEEeC-----CCCHHHHHHHHHhhhhcCCCceEEEEeCCccCCCCcCCHHHHHH
Confidence 99999999999988877665 44443332 3789999998874 7899999999999999999999999
Q ss_pred HHHhcCCEEEEecccccccccc---------cCCCCCccEEEeccccccCCCCcEEEEEecCCCCcccceecCCCccccc
Q psy15216 161 LCRSKGVIFHCDAAQAVGKIDI---------NIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGL 231 (2602)
Q Consensus 161 la~~~g~~livD~a~a~g~~~~---------dl~~~~~D~~~~S~~K~~Gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~ 231 (2602)
+|++||+++|+|++|+.|.... ++. .++|++++|+||++++..+||+++++++.+.+.+.... ..
T Consensus 195 la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~-~~~di~~~s~sK~l~g~r~G~~~~~~~~~~~l~~~~~~-----~~ 268 (393)
T TIGR01822 195 LADKYDALVMVDECHATGFLGPTGRGSHELCGVM-GRVDIITGTLGKALGGASGGFTTARKEVVELLRQRSRP-----YL 268 (393)
T ss_pred HHHHcCCEEEEECCccccCcCCCCCchHHhcCCC-CCCeEEEEEChHHhhCCCcEEEEeCHHHHHHHHHhCcc-----ce
Confidence 9999999999999998765421 221 25789999999965433369999988777766542111 11
Q ss_pred cccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc-cChhHHHHHh
Q psy15216 232 RSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGESLLMAI 310 (2602)
Q Consensus 232 ~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~L 310 (2602)
..++.+...++++.++++... ..++.++++.++++++.+.|.+ .|+.+..+. .+ ++.+.++. .+..++...|
T Consensus 269 ~~~~~~~~~~~a~~~al~~~~-~~~~~~~~~~~~~~~l~~~L~~--~g~~~~~~~---~~-~~~i~~~~~~~~~~l~~~L 341 (393)
T TIGR01822 269 FSNSLPPAVVGASIKVLEMLE-ASNELRDRLWANTRYFRERMEA--AGFDIKPAD---HP-IIPVMLYDAVLAQRFARRL 341 (393)
T ss_pred ecCCCCHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHH--cCCCCCCCC---CC-EEEEEeCCHHHHHHHHHHH
Confidence 234555555666667777543 3567788999999999999977 366554221 12 33333332 3456677666
Q ss_pred --CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 311 --KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 311 --~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
+||.+. +..+... . .....+|++++.++|++|+++++++|++.
T Consensus 342 ~~~gI~v~-~~~~~~~-------------~--~~~~~iRis~~~~~t~edi~~~~~~l~~~ 386 (393)
T TIGR01822 342 LEEGIYVT-GFFYPVV-------------P--KGQARIRVQISAAHTEEQLDRAVEAFTRI 386 (393)
T ss_pred HHCCeeEe-eeCCCCC-------------C--CCCceEEEEECCCCCHHHHHHHHHHHHHH
Confidence 788887 4333110 0 01246999999999999999999999864
|
This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function. |
| >PRK08153 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.1e-21 Score=248.75 Aligned_cols=304 Identities=15% Similarity=0.125 Sum_probs=223.1
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCC
Q psy15216 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK 87 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd 87 (2602)
++|+.+.+++.+.+.....++.. ...++|+++|+++++++++|++|+|+++++.+++.++. ++||
T Consensus 45 ~~~~~~~~a~~~~~~~~~~Y~~~-----------~~~~Lr~~ia~~~~~~~~~I~it~G~~~~l~~~~~~~~----~~gd 109 (369)
T PRK08153 45 GPSPSVIAAMREAAAEIWKYGDP-----------ENHDLRHALAAHHGVAPENIMVGEGIDGLLGLIVRLYV----EPGD 109 (369)
T ss_pred CCCHHHHHHHHHHHHHhhcCCCC-----------ccHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHhc----CCCC
Confidence 67888999998877544444432 14678999999999999999999999999999999887 7999
Q ss_pred EEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhc-cCCceEEEEecccCcccccccHHHHHHHHHh--
Q psy15216 88 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKI-CSDTILVSVMLVNNEIGVIQPILEIGELCRS-- 164 (2602)
Q Consensus 88 ~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i-~~~tklv~i~~~~npTG~~~~l~~I~~la~~-- 164 (2602)
.|++++|.|+.+...+... |++++.++.+.+ .+|++++.+.+ +++++++++++|+||||.++|.+++.++++.
T Consensus 110 ~vlv~~p~y~~~~~~~~~~---g~~~~~vp~~~~-~~~~~~l~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~~~~ 185 (369)
T PRK08153 110 PVVTSLGAYPTFNYHVAGF---GGRLVTVPYRDD-REDLDALLDAARRENAPLVYLANPDNPMGSWHPAADIVAFIEALP 185 (369)
T ss_pred EEEECCCcchHHHHHHHHc---CCeEEEeeCCCC-CCCHHHHHHHhcccCCcEEEEeCCCCCCCCCCCHHHHHHHHHhCC
Confidence 9999999999988766655 899999987655 47899998766 4689999999999999999999888887764
Q ss_pred cCCEEEEecccccccc---cccCCC-CCccEEEeccccccCCCC--cEEEEEecCCCCcccceecCCCccccccccCcch
Q psy15216 165 KGVIFHCDAAQAVGKI---DINIQN-YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLAT 238 (2602)
Q Consensus 165 ~g~~livD~a~a~g~~---~~dl~~-~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~ 238 (2602)
+++++|+|+++..-.. ...+.. ....+++.||+|.+|.+| +||+++++++++.+..... .++.+.
T Consensus 186 ~~~~lI~DE~y~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~v~~~~~~~~l~~~~~---------~~~~s~ 256 (369)
T PRK08153 186 ETTLLVLDEAYCETAPAGAAPPIDTDDPNVIRMRTFSKAYGLAGARVGYAIGAPGTIKAFDKVRN---------HFGMNR 256 (369)
T ss_pred CCcEEEEeCchhhhcCcccchhhhhcCCCEEEEecchHhccCcchheeeeecCHHHHHHHHHhhc---------CCCCCH
Confidence 3899999999753211 111211 123477889999999888 7999998877766653321 234566
Q ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc--cChhHHHHHh--CCeE
Q psy15216 239 HQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF--IEGESLLMAI--KDIA 314 (2602)
Q Consensus 239 ~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~L--~gI~ 314 (2602)
+...++.++|+ ...+.++.+++.+++++++.+.|++ .|+... +.. ..+..+.++. .....+.+.| +||.
T Consensus 257 ~~q~~~~~~l~-~~~~~~~~~~~~~~~r~~~~~~L~~--~g~~~~-p~~---~~f~~~~~~~~~~~a~~l~~~l~~~Gi~ 329 (369)
T PRK08153 257 IAQAAALAALK-DQAYLAEVVGKIAAARDRIAAIARA--NGLTPL-PSA---TNFVAIDCGRDGAFARAVLDGLIARDIF 329 (369)
T ss_pred HHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHHH--CCCccC-CCc---CcEEEEECCCCcccHHHHHHHHHHCCeE
Confidence 66666667775 2345677788888888888888876 355433 211 1222233321 2345666666 7999
Q ss_pred Ec-ccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 315 VS-SGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 315 v~-~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
++ ++... ..+++||+++ +++|+++++++|++.
T Consensus 330 v~~p~~~~--------------------~~~~iRis~~---~~~~~~~~~~al~~~ 362 (369)
T PRK08153 330 VRMPGVAP--------------------LDRCIRVSCG---PDEELDLFAEALPEA 362 (369)
T ss_pred EeeCCCCC--------------------CCCeEEEecC---CHHHHHHHHHHHHHH
Confidence 85 33210 1278999998 799999999999964
|
|
| >PLN00175 aminotransferase family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4e-21 Score=250.56 Aligned_cols=314 Identities=16% Similarity=0.150 Sum_probs=227.1
Q ss_pred CCCHHHHHHHHHHHhhc-cCCCCCccchhHHHHHHHHHHHHHHHHHHh----C--CCCC-cEEEeCCHHHHHHHHHHhhh
Q psy15216 1404 PIDPRVVDKMIPYLRVQ-FGNPASRNHIYGWTAEKAIEKARNEVAQLI----Y--ADPR-EIIWTSGATESNNLAIKGAA 1475 (2602)
Q Consensus 1404 ~~~~~v~eal~~~l~~~-~~np~~~~~~~~~~~~~~~~~lr~~ia~~~----g--~~~~-~iv~t~gaT~al~~al~~l~ 1475 (2602)
+.++.+.+++.+.++.. ..|+.. . ...++|+++++++ | ++++ +|++|+|+++|+..++.++.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~Y~~~------~----G~~~Lr~aia~~~~~~~g~~~~~~~~I~vt~G~~~al~~~~~~l~ 136 (413)
T PLN00175 67 DGPDFVKEAAIQAIRDGKNQYARG------F----GVPELNSAIAERFKKDTGLVVDPEKEVTVTSGCTEAIAATILGLI 136 (413)
T ss_pred CCCHHHHHHHHHHHhcCCCCcCCC------C----CCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCHHHHHHHHHHHhC
Confidence 45678888888887641 122221 1 2345666666655 4 4666 69999999999999999887
Q ss_pred hhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCC-CCCcChhHHHhhccCCceEEEEeccccccccccC---h
Q psy15216 1476 HFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---I 1551 (2602)
Q Consensus 1476 ~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~-~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~---l 1551 (2602)
++||+|++++|.|+.+...++.. |++++.++.++ ++.+|+++|++++++++++|++++|+||||.+++ +
T Consensus 137 ----~~gd~Vlv~~P~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~~~~l~~~~~~~~k~i~i~~p~NPtG~~~s~~~l 209 (413)
T PLN00175 137 ----NPGDEVILFAPFYDSYEATLSMA---GAKIKTVTLRPPDFAVPEDELKAAFTSKTRAILINTPHNPTGKMFTREEL 209 (413)
T ss_pred ----CCCCEEEEeCCCchhHHHHHHHc---CCEEEEEECCcccCCCCHHHHHHhcCcCceEEEecCCCCCCCcCCCHHHH
Confidence 89999999999999987766655 99999999874 5779999999999999999999999999999998 6
Q ss_pred HHHHHHhhhcCCEEEEecccccCcc---ccc---CCC-CCccEEEEccccccCCCc--eEEEEEecCCCCccccccccCC
Q psy15216 1552 LEIGELCRSKGVIFHCDAAQAVGKI---DIN---IQN-YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGG 1622 (2602)
Q Consensus 1552 ~~I~~ia~~~gi~vivD~a~~~g~~---~~~---l~~-~~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~~g~~ 1622 (2602)
++|+++|++|++++|+|++|..... +.. +.. .+..+++.||+|.+|++| +||+++++++++.+....
T Consensus 210 ~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~s~~~~~~~~~~vi~i~SfSK~~~~~G~RiG~~v~~~~l~~~l~~~~---- 285 (413)
T PLN00175 210 ELIASLCKENDVLAFTDEVYDKLAFEGDHISMASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAH---- 285 (413)
T ss_pred HHHHHHHHHcCcEEEEecccCccccCCcccChhhCCCCcCcEEEEecchhhccCcchheeeeEeCHHHHHHHHHHH----
Confidence 6788999999999999999854321 111 211 134578889999888778 899999987766654322
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEe----cC-
Q psy15216 1623 HEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN----FI- 1697 (2602)
Q Consensus 1623 ~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~----~~- 1697 (2602)
.....+.+.+.+.++..+|......+++.++++++.++.+.+.|.+ .++.+..+.. ..++++. +.
T Consensus 286 ---~~~~~~~s~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~--~g~~~~~p~g-----~~f~~~~~~~~~~~ 355 (413)
T PLN00175 286 ---SFLTFATATPMQWAAVAALRAPESYYEELKRDYSAKKDILVEGLKE--VGFKVYPSSG-----TYFVMVDHTPFGFE 355 (413)
T ss_pred ---hhccCCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH--CCCeecCCCe-----eEEEEEeccccCCC
Confidence 1112345555666666777643445778888999999999999987 3666543211 1222322 12
Q ss_pred CcHHHHHhc---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1698 EGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1698 ~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
+..++...| +||.+.||..|... .....+++||+++. +.++++..+++|++
T Consensus 356 ~~~~~~~~ll~~~gV~v~pg~~F~~~--------------~~~~~~~iRls~~~--~~e~l~~~~~rL~~ 409 (413)
T PLN00175 356 NDIAFCEYLIEEVGVAAIPPSVFYLN--------------PEDGKNLVRFAFCK--DEETLRAAVERMKT 409 (413)
T ss_pred CHHHHHHHHHHhCCEEEeCchHhCCC--------------CCCCCCEEEEEEcC--CHHHHHHHHHHHHH
Confidence 245666655 59999999877431 00123789999984 78999999999986
|
|
| >PRK06348 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.3e-21 Score=250.45 Aligned_cols=288 Identities=14% Similarity=0.075 Sum_probs=212.5
Q ss_pred HHHHHHHHHHh------CCCCCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEec
Q psy15216 44 EKARNEVAQLI------YADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLK 117 (2602)
Q Consensus 44 ~~~r~~lA~~~------g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~ 117 (2602)
.++|+++++++ ++++++|++|+|+++|+.+++.++. ++||+|++++|.|+.+...+..+ |++++.++
T Consensus 69 ~~lr~~ia~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~----~~gd~vlv~~p~y~~~~~~~~~~---g~~~~~~~ 141 (384)
T PRK06348 69 VELIEEIIKYYSKNYDLSFKRNEIMATVGACHGMYLALQSIL----DPGDEVIIHEPYFTPYKDQIEMV---GGKPIILE 141 (384)
T ss_pred HHHHHHHHHHHHHHhCCCCChhhEEEcCChHHHHHHHHHHhc----CCCCEEEEeCCCCcchHHHHHHc---CCEEEEec
Confidence 44566666665 4578899999999999999999997 89999999999999988887766 88888888
Q ss_pred cC--CCCccChHHHHhhccCCceEEEEecccCccccccc---HHHHHHHHHhcCCEEEEeccccccc---cccc---CCC
Q psy15216 118 PK--NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQAVGK---IDIN---IQN 186 (2602)
Q Consensus 118 ~~--~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~---l~~I~~la~~~g~~livD~a~a~g~---~~~d---l~~ 186 (2602)
.. .++.+|+++++++++++++++++++||||||.+++ +++|.++|++|++++|+|++++... .... +..
T Consensus 142 ~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~ 221 (384)
T PRK06348 142 TYEEDGFQINVKKLEALITSKTKAIILNSPNNPTGAVFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYEDFVPMATLAG 221 (384)
T ss_pred CCcCcCCcCCHHHHHHhhCcCccEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEecccccceeCCCccchhhcCC
Confidence 64 34569999999999889999999999999999998 5667888999999999999986321 1111 111
Q ss_pred -CCccEEEeccccccCCCC--cEEEEEecCCCCcccceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHH
Q psy15216 187 -YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRIL 263 (2602)
Q Consensus 187 -~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~ 263 (2602)
.+..+++.|++|.+|++| +||+++++++++.+..... ....+++.....++..++.....+.++.+..++
T Consensus 222 ~~~~vi~~~SfSK~~~l~GlRiG~~v~~~~~~~~~~~~~~-------~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~ 294 (384)
T PRK06348 222 MPERTITFGSFSKDFAMTGWRIGYVIAPDYIIETAKIINE-------GICFSAPTISQRAAIYALKHRDTIVPLIKEEFQ 294 (384)
T ss_pred CcCcEEEEecchhccCCccccceeeecCHHHHHHHHHHHH-------hccCCCCHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 123578889999988888 8999998877665543321 112234555555565666543445677788888
Q ss_pred HHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEc--ccChhHHHHHh---CCeEEcccccCCCCCCChHHHHHHcCCC
Q psy15216 264 FLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN--FIEGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCN 338 (2602)
Q Consensus 264 ~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~ 338 (2602)
++++.+.+.|.. ++++.+..+.. ....++.++ ..+..++...+ +||.+.+|..|...
T Consensus 295 ~r~~~~~~~L~~-~~~~~~~~p~g---g~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~pg~~f~~~-------------- 356 (384)
T PRK06348 295 KRLEYAYKRIES-IPNLSLHPPKG---SIYAFINIKKTGLSSVEFCEKLLKEAHVLVIPGKAFGES-------------- 356 (384)
T ss_pred HHHHHHHHHHhc-CCCceeccCCe---eEEEEEecccCCCCHHHHHHHHHHhCCEEEcCchhhccC--------------
Confidence 888889999977 56766553322 122333444 24566666654 59999998876431
Q ss_pred ccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 339 DELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 339 ~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
..+++||+++ .++++++..+++|++
T Consensus 357 ---~~~~iRi~~~--~~~~~l~~al~~l~~ 381 (384)
T PRK06348 357 ---GEGYIRLACT--VGIEVLEEAFNRIEK 381 (384)
T ss_pred ---CCCeEEEEec--CCHHHHHHHHHHHHh
Confidence 1378999996 478899999998875
|
|
| >TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.6e-21 Score=247.28 Aligned_cols=311 Identities=14% Similarity=0.169 Sum_probs=224.7
Q ss_pred CCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCC
Q psy15216 1403 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRG 1482 (2602)
Q Consensus 1403 ~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~g 1482 (2602)
+.+|+++++++.++.+... ...+..+++++.+++++|++ ++++|+|+|+|++++++++. ++|
T Consensus 23 s~~~~~v~~a~~~~~~~~~------------~~~~~~~~~~~~~a~~~g~~--~~~~~~g~t~al~~al~al~----~~G 84 (363)
T TIGR01437 23 STVSDEVADAQKRGAQNYF------------EIKELVNKTGEYIANLLGVE--DAVIVSSASAGIAQSVAAVI----TRG 84 (363)
T ss_pred CCCCHHHHHHHHHHHhcCC------------CHHHHHHHHHHHHHHhhCCC--eEEEEcCHHHHHHHHHHHHh----cCC
Confidence 4588999999999876421 12357889999999999965 78999999999999999987 778
Q ss_pred C---------------EEEEcCCCCcchHHHH-HHHHhCCcEEEEeccCCCCCcChhHHHhhccCCceEEE-Eecccccc
Q psy15216 1483 K---------------HIITVQTEHKSVLDSI-RKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVS-VMLVNNEI 1545 (2602)
Q Consensus 1483 d---------------~Vlv~~~~~~s~~~~~-~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~~t~lv~-l~~~~n~t 1545 (2602)
| +|+++.+.|+.+...+ ..+...|+++++++. ++.+|+++++++|+++|++++ +++++||+
T Consensus 85 d~~~~~~~~~s~~~~~eVi~~~~~~~~~~~~~~~~~~~~g~~~v~v~~--~~~~d~~~le~ai~~~t~ai~~v~~~~~~~ 162 (363)
T TIGR01437 85 NRYLVENLHDSKIEVNEVVLPKGHNVDYGAPVETMVRLGGGKVVEAGY--ANECSAEQLEAAITEKTAAILYIKSHHCVQ 162 (363)
T ss_pred CcchhhcccccccccceEEEECccchhcCCchHHHHHhcCCeEEEEcC--CCCCCHHHHHHhcChhceEEEEEecCCCCc
Confidence 7 9999987666553222 222345999999976 356999999999999999766 56778999
Q ss_pred ccccChHHHHHHhhhcCCEEEEecccccCcccccCCCCCccEEEEcccc-ccCCCceEEEEEecCCCCccccccccCCcc
Q psy15216 1546 GVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGHE 1624 (2602)
Q Consensus 1546 G~~~~l~~I~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K-~~gp~G~G~l~~~~~~~~~l~~~~~g~~~~ 1624 (2602)
|.+.|+++|+++|++||+++++|++|+.... ....+++|++++|+|| +.||+ .|+++.+++.++.+.+...+. .
T Consensus 163 g~~~~~~~i~~~a~~~gi~vivD~a~~~~~~--~~~~~g~D~~~~S~~K~l~gp~-~G~l~~~~~~i~~~~~~~~~~--~ 237 (363)
T TIGR01437 163 KSMLSVEDAAQVAQEHNLPLIVDAAAEEDLQ--KYYRLGADLVIYSGAKAIEGPT-SGLVLGKKKYIEWVKLQSKGI--G 237 (363)
T ss_pred CCcCCHHHHHHHHHHcCCeEEEECCCCCchH--HHHHcCCCEEEEeCCcccCCCc-eEEEEEcHHHHHHHHhccCCC--c
Confidence 9999999999999999999999999973221 1224578999999999 77898 699988876666554333221 2
Q ss_pred ccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCC--CCCceEEEEEe----cCC
Q psy15216 1625 YGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNN--RIPHNLNISFN----FIE 1698 (2602)
Q Consensus 1625 ~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~--~~~~~~~~~~~----~~~ 1698 (2602)
..++.++. .+.++.+|+++......+..+.+.+.+++++++|.+ ++|+.+..+... .......+.|. +.+
T Consensus 238 ~~~~~~~~---~~~gl~aAl~~~~~~~~~~~~~~~~~~~~l~~~L~~-i~g~~~~~~~~~~~~~~~~~~v~~~~~~~g~~ 313 (363)
T TIGR01437 238 RAMKVGKE---NILGLTAALEQYLSTGKESGAEMVAKLTPFIEALNT-LKGVSASIVQDEAGRDIARAEIRFDESELGMT 313 (363)
T ss_pred ceeccCHH---HHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHhc-CCCeEEEEecCCCCCcCceEEEEEeccCCCCC
Confidence 33444553 367777788855443333344444567789999987 789987743221 11112234444 356
Q ss_pred cHHHHHhcC--C--EEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1699 GESLLMAIK--D--IAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1699 ~~~~~~~L~--g--I~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
..++...|+ + |.+++ ++.. .+.+|+++.. ++++|++.++++|++
T Consensus 314 ~~~l~~~L~~~~~~I~~r~--~~~~-------------------~~~~~l~~~~-~~~~e~~~~~~~l~~ 361 (363)
T TIGR01437 314 AADVVQALRQGEPAIYTRG--YKAN-------------------EGIIEIDPRS-VTGGQLDIIVERIRE 361 (363)
T ss_pred HHHHHHHHhcCCCCEEEee--eeec-------------------CCeEEEEeec-CCHHHHHHHHHHHHH
Confidence 778888882 5 55543 2222 2789999875 569999999999986
|
This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation. |
| >PRK08960 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.7e-21 Score=249.47 Aligned_cols=315 Identities=15% Similarity=0.108 Sum_probs=221.4
Q ss_pred CCCHHHHHHHHHHHhhc-cCCCCCccchhHHHHHHHHHHHHHHHHHHhC------CCCCcEEEeCCHHHHHHHHHHhhhh
Q psy15216 1404 PIDPRVVDKMIPYLRVQ-FGNPASRNHIYGWTAEKAIEKARNEVAQLIY------ADPREIIWTSGATESNNLAIKGAAH 1476 (2602)
Q Consensus 1404 ~~~~~v~eal~~~l~~~-~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g------~~~~~iv~t~gaT~al~~al~~l~~ 1476 (2602)
++++.+.+++.+.+... ..++. .....++|+.++++++ +++++|++|+|+++|++.++.++.
T Consensus 45 ~~~~~v~~a~~~~~~~~~~~Y~~----------~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~~- 113 (387)
T PRK08960 45 TTAEPIVAAGQAALAAGHTRYTA----------ARGLPALREAIAGFYAQRYGVDVDPERILVTPGGSGALLLASSLLV- 113 (387)
T ss_pred CCCHHHHHHHHHHHhcCCCccCC----------CCCCHHHHHHHHHHHHHHhCCCCChhhEEEccCcHHHHHHHHHHhc-
Confidence 56888999999888642 11211 1124667888888873 688899999999999999998886
Q ss_pred hhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCC--CCcChhHHHhhccCCceEEEEeccccccccccC---h
Q psy15216 1477 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN--GLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---I 1551 (2602)
Q Consensus 1477 ~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~--~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~---l 1551 (2602)
++||+|++++|+|+++...+... |.+++.++++.+ +.+|+++++++++++++++++++|+||||.++| +
T Consensus 114 ---~~gd~vlv~~p~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~~~~~ 187 (387)
T PRK08960 114 ---DPGKHWLLADPGYPCNRHFLRLV---EGAAQLVPVGPDSRYQLTPALVERHWNADTVGALVASPANPTGTLLSRDEL 187 (387)
T ss_pred ---CCCCEEEEcCCCCcchHHHHHhc---CCeEEEEecCcccCCCCCHHHHHHHhCccceEEEEECCCCCCCcCcCHHHH
Confidence 89999999999999998777665 889998988653 468999999999999999999999999999999 4
Q ss_pred HHHHHHhhhcCCEEEEecccccCc---ccccCCCCCc-cEEEEccccccCCCc--eEEEEEecCCCCccccccccCCccc
Q psy15216 1552 LEIGELCRSKGVIFHCDAAQAVGK---IDINIQNYKV-DLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEY 1625 (2602)
Q Consensus 1552 ~~I~~ia~~~gi~vivD~a~~~g~---~~~~l~~~~~-D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~ 1625 (2602)
++|+++|++||+++++|+++..-. ....+..... .+++.|+||.+|++| +||+++++++++.+.....
T Consensus 188 ~~l~~~~~~~~~~li~De~Y~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~~~~~~~~~~~~~~~~------ 261 (387)
T PRK08960 188 AALSQALRARGGHLVVDEIYHGLTYGVDAASVLEVDDDAFVLNSFSKYFGMTGWRLGWLVAPPAAVPELEKLAQ------ 261 (387)
T ss_pred HHHHHHHHHcCCEEEEEccccccccCCCCCChhhccCCEEEEeecccccCCcccEEEEEEcCHHHHHHHHHHHh------
Confidence 567778899999999999975211 1111112222 367789999998888 9999999877666544321
Q ss_pred cCCCCCcchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEec--CCcHHH
Q psy15216 1626 GLRSGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF--IEGESL 1702 (2602)
Q Consensus 1626 ~~~~gt~~~~~~~al~~aL~-~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~--~~~~~~ 1702 (2602)
.+ ..+.+...+.++..++. .....+.+.+..+.+.++.+.+.|.+ . ++.+...+.. .....+.++. .+..++
T Consensus 262 ~~-~~~~s~~~q~a~~~~l~~~~~~~l~~~~~~~~~~~~~l~~~L~~-~-~~~~~~~p~g--~~f~~~~~~~~~~~~~~~ 336 (387)
T PRK08960 262 NL-YISASTPAQHAALACFEPETLAILEARRAEFARRRDFLLPALRE-L-GFGIAVEPQG--AFYLYADISAFGGDAFAF 336 (387)
T ss_pred hh-ccCCCHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHh-c-CCcCCcCCCe--eEEEEEeccccCCCHHHH
Confidence 11 12334445554545554 22345677777888888999999976 2 4433211111 1111222222 244566
Q ss_pred HHhc---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1703 LMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1703 ~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
...| +||.+.+|..|... ...+++|++++. +.+.+..+++.|++
T Consensus 337 ~~~ll~~~gi~v~pg~~f~~~----------------~~~~~iRi~~~~--~~~~l~~al~~l~~ 383 (387)
T PRK08960 337 CRHFLETEHVAFTPGLDFGRH----------------QAGQHVRFAYTQ--SLPRLQEAVERIAR 383 (387)
T ss_pred HHHHHHhCCEEEcCchHhCCC----------------CCCCeEEEEecC--CHHHHHHHHHHHHH
Confidence 6553 69999999877532 013789999995 56777777777765
|
|
| >PRK07682 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.9e-21 Score=250.97 Aligned_cols=313 Identities=17% Similarity=0.136 Sum_probs=223.7
Q ss_pred CCCHHHHHHHHHHHhhh-cCCCCCCCcchhhhHHHHHHHHHHHHHHHh----CC--CCC-cEEEeCCHHHHHHHHHHhcc
Q psy15216 8 PIDPRVVDKMIPYLRVQ-FGNPASRNHIYGWTAEKAIEKARNEVAQLI----YA--DPR-EIIWTSGATESNNLAIKGAA 79 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~-~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~----g~--~~~-~Iv~t~g~T~al~~~~~~l~ 79 (2602)
++++.+.+++.+.+... ..++.. ....++|+++|+++ |. +++ +|++|+|+++|+.+++.++.
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~Y~~~----------~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~l~ 102 (378)
T PRK07682 33 VTPWNVREASIRSLEQGYTSYTAN----------AGLLELRQEIAKYLKKRFAVSYDPNDEIIVTVGASQALDVAMRAII 102 (378)
T ss_pred CCCHHHHHHHHHHHhcCCCCCCCC----------CCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhC
Confidence 34566778887766531 122211 12345566666665 44 454 79999999999999999887
Q ss_pred cccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCC--CCccChHHHHhhccCCceEEEEecccCccccccc---
Q psy15216 80 HFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP--- 154 (2602)
Q Consensus 80 ~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~--- 154 (2602)
++||.|++++|.|+.+...++.. |++++.++.+. ++.+|++++++++.++++++++++|+||||.+++
T Consensus 103 ----~~gd~vl~~~p~y~~~~~~~~~~---g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~NPtG~~~s~~~ 175 (378)
T PRK07682 103 ----NPGDEVLIVEPSFVSYAPLVTLA---GGVPVPVATTLENEFKVQPAQIEAAITAKTKAILLCSPNNPTGAVLNKSE 175 (378)
T ss_pred ----CCCCEEEEeCCCchhhHHHHHHc---CCEEEEeecCCccCCCCCHHHHHhhcCcccEEEEEECCCCCcCcCcCHHH
Confidence 89999999999999887666655 88888888753 5689999999999999999999999999999997
Q ss_pred HHHHHHHHHhcCCEEEEecccccccc-----c-ccCCC-CCccEEEeccccccCCCC--cEEEEEecCCCCcccceecCC
Q psy15216 155 ILEIGELCRSKGVIFHCDAAQAVGKI-----D-INIQN-YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGG 225 (2602)
Q Consensus 155 l~~I~~la~~~g~~livD~a~a~g~~-----~-~dl~~-~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g~ 225 (2602)
+++|.++|++|++++|+|++|+.... + ..+.. ....+++.|++|.+|++| +||+++++++++.+.....
T Consensus 176 ~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~~~~~~~~i~~l~~~~~-- 253 (378)
T PRK07682 176 LEEIAVIVEKHDLIVLSDEIYAELTYDEAYTSFASIKGMRERTILISGFSKGFAMTGWRLGFIAAPVYFSEAMLKIHQ-- 253 (378)
T ss_pred HHHHHHHHHHcCcEEEEehhhhhcccCCCCCChhhcccccCCEEEEecCcccccChhhhhhhhhcCHHHHHHHHHHHH--
Confidence 77788899999999999999864321 1 11111 134588889999999888 8999999888777654321
Q ss_pred CccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEc--ccCh
Q psy15216 226 GHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN--FIEG 303 (2602)
Q Consensus 226 ~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~--~~~~ 303 (2602)
+...+++.....++..+|+....++++.+++++++++++.+.|.+ . ++.+..+... ...+..++ ..+.
T Consensus 254 -----~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~-~-~~~~~~p~g~---~~~~~~~~~~~~~~ 323 (378)
T PRK07682 254 -----YSMMCAPTMAQFAALEALRAGNDDVIRMRDSYRKRRNFFVTSFNE-I-GLTCHVPGGA---FYAFPSISSTGLSS 323 (378)
T ss_pred -----hhccCCCHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHH-C-CCccCCCCee---EEEEEeccCCCCCH
Confidence 112234444555555666532344677888889999999999987 3 6654433221 12222232 2456
Q ss_pred hHHHHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 304 ESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 304 ~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
.++...+ +||.+++|..|.+. ..+++||+++. +.++++..+++|++
T Consensus 324 ~~~~~~ll~~~gv~v~pg~~f~~~-----------------~~~~iRis~~~--~~~~l~~~l~~l~~ 372 (378)
T PRK07682 324 EEFAEQLLLEEKVAVVPGSVFGES-----------------GEGFIRCSYAT--SLEQLQEAMKRMKR 372 (378)
T ss_pred HHHHHHHHHhCCEEEcCchhhCcC-----------------CCCeEEEEeCC--CHHHHHHHHHHHHH
Confidence 6676664 59999998776431 13899999984 68999999999986
|
|
| >PTZ00377 alanine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.3e-21 Score=252.16 Aligned_cols=325 Identities=18% Similarity=0.146 Sum_probs=223.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhC------CCCCcEEEeCCHHHHHHHHH
Q psy15216 2 DYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIY------ADPREIIWTSGATESNNLAI 75 (2602)
Q Consensus 2 d~a~~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g------~~~~~Iv~t~g~T~al~~~~ 75 (2602)
|+++++..|..+++++.+++..... ... .|.......++|+++|++++ +++++|++|+|+++|+.+++
T Consensus 82 ~~~~~~~~P~~~~~~~~~~~~~~~~--~~~----~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~ 155 (481)
T PTZ00377 82 DPSVSSLFPADVVARAKEYLNAIGG--GTG----AYTDSAGYPFVRKAVAAFIERRDGVPKDPSDIFLTDGASSGIKLLL 155 (481)
T ss_pred CccccccCCHHHHHHHHHHHHhCCC--ccc----CcCcccCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHH
Confidence 3444556678888888776654211 111 12222345667777777763 47789999999999999999
Q ss_pred HhcccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCC--CCccChHHHHhhccC------CceEEEEecccC
Q psy15216 76 KGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICS------DTILVSVMLVNN 147 (2602)
Q Consensus 76 ~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~ld~e~l~~~i~~------~tklv~i~~~~n 147 (2602)
.++. .++||+|+++.|.|+.+...++.+ |++++.+++++ ++.+|+++|++++++ ++|++++++|||
T Consensus 156 ~~l~---~~~gD~Vlv~~P~y~~y~~~~~~~---g~~~v~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~l~l~~P~N 229 (481)
T PTZ00377 156 QLLI---GDPSDGVMIPIPQYPLYSAAITLL---GGKQVPYYLDEEKGWSLDQEELEEAYEQAVRNGITPRALVVINPGN 229 (481)
T ss_pred HHhc---cCCCCEEEECCCCchhHHHHHHHc---CCEEEEEEeccccCCCCCHHHHHHHHHHHHhcCCCeeEEEEECCCC
Confidence 9886 258999999999999988777766 99999998864 357999999999875 799999999999
Q ss_pred ccccccc---HHHHHHHHHhcCCEEEEeccccccc----ccc--------cCCCC---C-ccEEEecccc-ccCCCC--c
Q psy15216 148 EIGVIQP---ILEIGELCRSKGVIFHCDAAQAVGK----IDI--------NIQNY---K-VDLMSFSAHK-IYGPKG--I 205 (2602)
Q Consensus 148 pTG~~~~---l~~I~~la~~~g~~livD~a~a~g~----~~~--------dl~~~---~-~D~~~~S~~K-~~Gp~G--~ 205 (2602)
|||.+++ +++|+++|++|++++|+|++|..-. .++ ++... + .-+++.|+|| ++|++| +
T Consensus 230 PTG~~~s~e~~~~i~~~a~~~~~~iI~De~Y~~l~~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~~~~GlRi 309 (481)
T PTZ00377 230 PTGQVLTRDVMEEIIKFCYEKGIVLMADEVYQENIYDGEKPFISFRKVLLELPAEYNTDVELVSFHSTSKGIIGECGRRG 309 (481)
T ss_pred CCCcCCCHHHHHHHHHHHHHCCCEEEEehhhHhhccCCCCCcccHHHHHHhhcccccCCeEEEEEecCCcccccCCcCce
Confidence 9999999 7788899999999999999985311 111 11111 1 1367789999 578888 8
Q ss_pred EEEEE---ecCCCCcccceecCCCccccccccCcchhHHHHHHHHHHH----------HHHhHHHHHHHHHHHHHHHHHH
Q psy15216 206 GALYI---RRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRL----------ARIEMKEELKRILFLQKRLYNG 272 (2602)
Q Consensus 206 G~l~~---~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~----------~~~~~~~~~~~~~~l~~~l~~~ 272 (2602)
||+++ ++++++.+..... ...+++..+..++..+++. ....+.+...++++.++.+.+.
T Consensus 310 G~~~~~~~p~~li~~l~~~~~--------~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~ 381 (481)
T PTZ00377 310 GYFELTNIPPEVREQIYKLAS--------INLCSNVVGQLMTGLMCNPPREGDASYPLYKRERDAIFTSLKRRAELLTDE 381 (481)
T ss_pred EEEEEeCCCHHHHHHHHHHhh--------eecCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99987 6666666654321 1123555666666666631 1122344455667888889999
Q ss_pred HhhccCceEEeCCCCCCCCceEEEEEccc-------------ChhHHHHHh---CCeEEcccccCCCCCCChHHHHHHcC
Q psy15216 273 LMESIEEIYINGDMNNRIPHNLNISFNFI-------------EGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALG 336 (2602)
Q Consensus 273 L~~~~~g~~l~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g 336 (2602)
|.+ ++++.+..|... ..+++.+... +...++..+ +||.+.+|..|...
T Consensus 382 L~~-~~g~~~~~p~gg---~fl~~~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~F~~~------------ 445 (481)
T PTZ00377 382 LNK-IEGVSCQPVEGA---MYAFPRIELPEKAIQEAKERGLAPDVLYCLELLESTGIVVVPGSGFGQK------------ 445 (481)
T ss_pred Hhc-CCCcEeecCCee---EEEEeeccCchhhHHHHHhcCCCcHHHHHHHHHHHcCEEEeCCcccCCC------------
Confidence 977 678877644221 1111112210 122233333 69999999877531
Q ss_pred CCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 337 CNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 337 ~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
...+++|+|++ .++++++.++++|++
T Consensus 446 ----~~~~~~Rls~~--~~~e~l~~~l~rl~~ 471 (481)
T PTZ00377 446 ----PGTYHFRITIL--PPEEQIEEMVKKIKE 471 (481)
T ss_pred ----CCCCEEEEEEC--CCHHHHHHHHHHHHH
Confidence 11368999998 678899999999985
|
|
| >PRK05942 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.6e-21 Score=250.93 Aligned_cols=311 Identities=15% Similarity=0.145 Sum_probs=216.7
Q ss_pred CCHHHHHHHHHHHhhh--cCCCCCCCcchhhhHHHHHHHHHHHHHHHh----C--CCCC-cEEEeCCHHHHHHHHHHhcc
Q psy15216 9 IDPRVVDKMIPYLRVQ--FGNPASRNHIYGWTAEKAIEKARNEVAQLI----Y--ADPR-EIIWTSGATESNNLAIKGAA 79 (2602)
Q Consensus 9 ~p~~v~~a~~~~l~~~--~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~----g--~~~~-~Iv~t~g~T~al~~~~~~l~ 79 (2602)
+|+.+.+++.+.+... ..++.. ....++|+++++++ | ++++ +|++|+|+++|+..++.++.
T Consensus 49 ~p~~~~~~~~~~~~~~~~~~Y~~~----------~G~~~lr~aia~~~~~~~~~~~~~~~~i~vt~G~~~al~~~~~~~~ 118 (394)
T PRK05942 49 APQPVIEAAIAALADPQNHGYPPF----------EGTASFRQAITDWYHRRYGVELDPDSEALPLLGSKEGLTHLALAYV 118 (394)
T ss_pred CCHHHHHHHHHHHhCCCCccCCCC----------CCCHHHHHHHHHHHHHHHCCCcCCCCeEEEccChHHHHHHHHHHhC
Confidence 4566777776665421 112211 12345666666665 5 3566 48999999999999999887
Q ss_pred cccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCC--CCccChHHHHhhccCCceEEEEecccCccccccc---
Q psy15216 80 HFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP--- 154 (2602)
Q Consensus 80 ~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~--- 154 (2602)
++||+|++++|+|+.+...+... |++++.++.+. ++.+|++++++.+.++++++++++|+||||.+++
T Consensus 119 ----~~gd~Vlv~~P~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPtG~~~s~~~ 191 (394)
T PRK05942 119 ----NPGDVVLVPSPAYPAHFRGPLIA---GAQIYPIILKPENDWLIDLSSIPEEVAQQAKILYFNYPSNPTTATAPREF 191 (394)
T ss_pred ----CCCCEEEEcCCCCcchHHHHHHc---CCEEEEeecCCccCCccCHHHHHHhccccceEEEEcCCCCCCCCcCCHHH
Confidence 89999999999999987776655 99999998864 3569999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCEEEEeccccccc----cccc---CCC-CCccEEEeccccccCCCC--cEEEEEecCCCCcccceecC
Q psy15216 155 ILEIGELCRSKGVIFHCDAAQAVGK----IDIN---IQN-YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHG 224 (2602)
Q Consensus 155 l~~I~~la~~~g~~livD~a~a~g~----~~~d---l~~-~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g 224 (2602)
+++|.++|++||+++|+|++++... .+.. +.. .+..+++.||+|.||++| +||+++++++++.+.....
T Consensus 192 ~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~~GlRiG~i~~~~~l~~~l~~~~~- 270 (394)
T PRK05942 192 FEEIVAFARKYEIMLVHDLCYAELAFDGYQPTSLLEIPGAKDIGVEFHTLSKTYNMAGWRVGFVVGNRHIIQGLRTLKT- 270 (394)
T ss_pred HHHHHHHHHHcCeEEEEeccchhhccCCCCCCChhhCCCccccEEEEecchhccCChhhheeeeecCHHHHHHHHHHHh-
Confidence 6678888999999999999975321 1111 211 123477889999998888 8999999887777754331
Q ss_pred CCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc-cCh
Q psy15216 225 GGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEG 303 (2602)
Q Consensus 225 ~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~-~~~ 303 (2602)
....+++.....++..+++....+.++.++++.++++++.+.|.. .++.+..+.. ....++.++. .+.
T Consensus 271 ------~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~--~~~~~~~~~~---~~f~~~~~~~~~~~ 339 (394)
T PRK05942 271 ------NLDYGIFSALQKAAETALQLPDSYLQQVQERYRTRRDFLIQGLGE--LGWNIPPTKA---TMYLWVPCPVGMGS 339 (394)
T ss_pred ------hcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH--CCCeecCCCe---eeEEEEECCCCCCH
Confidence 012234444555566777644556778888889999999999976 3666553321 1122333332 345
Q ss_pred hHHHHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHH
Q psy15216 304 ESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK 367 (2602)
Q Consensus 304 ~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~ 367 (2602)
.++...+ +||.+.+|..|... ..+++||+++ ...+.+...++.|.
T Consensus 340 ~~~~~~~l~~~gV~v~~g~~f~~~-----------------~~~~iRis~~--~~~~~l~~~l~~l~ 387 (394)
T PRK05942 340 TDFALNVLQKTGVVVTPGNAFGEG-----------------GEGYVRISLI--ADCDRLGEALDRLK 387 (394)
T ss_pred HHHHHHHHHHCCEEEeCChhhCcC-----------------CCCeEEEEec--CCHHHHHHHHHHHH
Confidence 5555443 69999988765321 1379999997 34455555555554
|
|
| >PRK05166 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.2e-21 Score=248.20 Aligned_cols=303 Identities=14% Similarity=0.106 Sum_probs=219.7
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCC
Q psy15216 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK 87 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd 87 (2602)
.+|+.+.+++.+.......+++. .. .++|+++|+++|+++++|++|+|+++++++++.++. ++||
T Consensus 49 ~~~~~~~~al~~~~~~~~~Y~~~----------~g-~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~~~----~~gd 113 (371)
T PRK05166 49 GPSPAVRRAFADIAELLRLYPDP----------QG-RALREAIAARTGVPADRIILGNGSEDLIAVICRAVL----RPGD 113 (371)
T ss_pred CCCHHHHHHHHHHHHHhhcCCCC----------cH-HHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHHHhc----CCCC
Confidence 46778888887765444444432 11 368999999999998999999999999999999887 8999
Q ss_pred EEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHh--c
Q psy15216 88 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRS--K 165 (2602)
Q Consensus 88 ~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~--~ 165 (2602)
+|+++.|+|+.+...++. .|++++.++.++++.+|+++++++++++++++++++|+||||.++|.+++.++++. +
T Consensus 114 ~vli~~P~y~~~~~~~~~---~g~~~~~v~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~ 190 (371)
T PRK05166 114 RVVTLYPSFPLHEDYPTM---MGARVERVTVTPDLGFDLDALCAAVARAPRMLMFSNPSNPVGSWLTADQLARVLDATPP 190 (371)
T ss_pred EEEEcCCChHHHHHHHHH---cCCeEEEeecCCCCCCCHHHHHHhhhcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCC
Confidence 999999999887655544 49999999988778899999999999899999999999999999998887777653 4
Q ss_pred CCEEEEecccccccc----c--cc-CCCC-CccEEEeccccccCCCC--cEEEEE-ecCCCCcccceecCCCcccccccc
Q psy15216 166 GVIFHCDAAQAVGKI----D--IN-IQNY-KVDLMSFSAHKIYGPKG--IGALYI-RRNPRTRIEAQIHGGGHEYGLRSG 234 (2602)
Q Consensus 166 g~~livD~a~a~g~~----~--~d-l~~~-~~D~~~~S~~K~~Gp~G--~G~l~~-~~~~~~~l~~~~~g~~~~~~~~~g 234 (2602)
++++|+|+++..-.. + +. +... ...+++.||+|.+|++| +||+++ ++++.+.+..... ..
T Consensus 191 ~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~l~GlRiG~~i~~~~~l~~~~~~~~~---------~~ 261 (371)
T PRK05166 191 ETLIVVDEAYAEYAAGDDYPSALTLLKARGLPWIVLRTFSKAYGLAGLRVGYGLVSDPELVGLLDRVRT---------PF 261 (371)
T ss_pred CcEEEEECcHHHhcCCcCcccHHHHHhhcCCCEEEEeechHhhhcchhheeeeecCCHHHHHHHHHhcc---------CC
Confidence 889999999753221 1 11 1111 12478889999999888 899887 4555555443221 12
Q ss_pred CcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc-cChhHHHHHh--C
Q psy15216 235 TLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGESLLMAI--K 311 (2602)
Q Consensus 235 t~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~L--~ 311 (2602)
..+.....++.+++.. ..++++..+.+.+.++++.+.|++ . ++.+. ++. +.++++.. .+..++.+.| +
T Consensus 262 ~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~r~~l~~~L~~-~-g~~~~-p~~-----g~fl~~~~~~~~~~l~~~l~~~ 332 (371)
T PRK05166 262 NVNGAAQAAALAALDD-EEHLAKGVALALAERERLKKELAE-M-GYRIA-PSR-----ANFLFFDARRPASAVAEALLRQ 332 (371)
T ss_pred CCCHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHH-C-cCeeC-CCc-----CCEEEEeCCCCHHHHHHHHHHC
Confidence 3444444444455542 345677778888888999999987 3 66543 222 12334432 3456666666 7
Q ss_pred CeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 312 DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 312 gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
||.++++..+.. .+++||+++ +.+++++++++|++
T Consensus 333 gi~v~p~~~~~~-------------------~~~iRi~~~---~~~~~~~l~~~l~~ 367 (371)
T PRK05166 333 GVIVKPWKQPGF-------------------ETFIRVSIG---SPEENDHFVAALDK 367 (371)
T ss_pred CeEEecCCCCCC-------------------CCeEEEEcC---CHHHHHHHHHHHHH
Confidence 999998753211 389999998 78889999999985
|
|
| >PRK04366 glycine dehydrogenase subunit 2; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-20 Score=248.43 Aligned_cols=355 Identities=15% Similarity=0.160 Sum_probs=237.4
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHH--HHhcccccccC
Q psy15216 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLA--IKGAAHFYKKR 85 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~--~~~l~~~~~~~ 85 (2602)
..|+.+.+++.+.-......|.. ....+....+.+.++++++++++|.+...+..++|+++.+..+ ++.+. .++
T Consensus 81 ~~~p~i~~~~~~~~~~~~~tpYq-~e~~sqG~lel~~~~~~~la~l~G~~~~~l~~~~GA~a~~~~l~~~r~~~---~~~ 156 (481)
T PRK04366 81 KYNPKINEKVARLPGFAELHPLQ-PEETVQGALELMYELQEWLKEITGMDAVTLQPAAGAHGELTGLLMIRAYH---EAR 156 (481)
T ss_pred CCCHHHHHHHHhCcchhcCCCCC-ChhhhhHHHHHHHHHHHHHHHHhCCCceEEEeCcHHHHHHHHHHHHHHHh---hcc
Confidence 67788888877642111111211 1123445667889999999999999744454455555444432 22222 356
Q ss_pred CC----EEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccCCceEEEEecccCccccc-ccHHHHHH
Q psy15216 86 GK----HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVI-QPILEIGE 160 (2602)
Q Consensus 86 gd----~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~-~~l~~I~~ 160 (2602)
|| +|++++++|+++...+... |++++.+++++++.+|+++|+++++++|++|++++|+ +||.+ .|+++|++
T Consensus 157 Gd~~~~~Vlv~~~~hp~~~~~~~~~---G~~vv~v~~~~~~~~D~e~L~~~i~~~t~~V~v~~Pn-~tG~~~~dl~eI~~ 232 (481)
T PRK04366 157 GDTKRTEVIVPDSAHGTNPASAAMA---GFKVVEIPSNEDGLVDLEALKAAVGEDTAALMLTNPN-TLGLFERNILEIAE 232 (481)
T ss_pred CcCCCCEEEEcCCccHhHHHHHHHc---CCEEEEeecCCCCCcCHHHHHhhcccCCeEEEEeCCC-CccccchHHHHHHH
Confidence 66 9999999999998776554 9999999998888999999999999999999999987 99987 58999999
Q ss_pred HHHhcCCEEEEecccccccc-cccCCCCCccEEEecccccc------CCCCcEEEEEecCCCCcccceecCCCc------
Q psy15216 161 LCRSKGVIFHCDAAQAVGKI-DINIQNYKVDLMSFSAHKIY------GPKGIGALYIRRNPRTRIEAQIHGGGH------ 227 (2602)
Q Consensus 161 la~~~g~~livD~a~a~g~~-~~dl~~~~~D~~~~S~~K~~------Gp~G~G~l~~~~~~~~~l~~~~~g~~~------ 227 (2602)
+||++|+++++|++|+.+.. .++..++|+|++++|+||++ |++|+|++++++++.+.+.+...+...
T Consensus 233 ~a~~~gal~iVD~a~~~~~~g~~~~~~~GaD~~~~~~hK~l~~P~g~Ggp~~G~l~~~~~~~~~lp~~~v~~~g~~~~l~ 312 (481)
T PRK04366 233 IVHEAGGLLYYDGANLNAILGKARPGDMGFDVVHLNLHKTFSTPHGGGGPGSGPVGVKEELAPFLPVPVVEKDGDRYRLD 312 (481)
T ss_pred HHHHcCCEEEEEecChhhhcccCCccccCCCEEEEechhhcCCCCCCCCCCeeeeeehhhhHhhCCCCeeeccCCceeec
Confidence 99999999999999986533 24566789999999999954 345578999998877777544322110
Q ss_pred ---c---ccccccCcchhHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEc-
Q psy15216 228 ---E---YGLRSGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN- 299 (2602)
Q Consensus 228 ---~---~~~~~gt~~~~~~~al~~al~-~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~- 299 (2602)
+ ++++.++.+...+.++...+. +..+++.++.++...++++++++|.+ +.. +..+ .. ..+.+.+.++
T Consensus 313 ~~r~~~i~r~~a~t~~~l~~~~a~~~l~~~G~~Gl~~~a~~~~~~a~~l~~~L~~-~~~--~~~~-~~-~~~~~~~~~~~ 387 (481)
T PRK04366 313 YDRPKSIGRVRAFYGNFGVLVRAYAYIRSLGAEGLREVSEDAVLNANYLKARLKD-IYD--LPYD-RP-CMHEFVLSGKK 387 (481)
T ss_pred ccccccCCCcccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hCc--ccCC-CC-eeEEEEEECcc
Confidence 1 234445545444444434444 34456778888889999999999987 322 2211 11 1122333332
Q ss_pred ----ccChhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhhhhhh
Q psy15216 300 ----FIEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKEFFM 373 (2602)
Q Consensus 300 ----~~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~~~~~ 373 (2602)
+.+..++.+.| +||.+.... .+ ....+.+|++++.++|.+|||+++++|++.. ..
T Consensus 388 ~~~~g~~~~~v~~~L~~~Gi~~~~~~--~p----------------~~~~~~l~is~~e~~t~edid~l~~~l~~i~-~~ 448 (481)
T PRK04366 388 LKETGVRTLDIAKRLLDYGFHPPTIY--FP----------------LIVPEALMIEPTETESKETLDAFIAAMKQIA-EE 448 (481)
T ss_pred ccccCCCHHHHHHHHHHCCccCCccc--cc----------------cccCCeEEEcccCCCCHHHHHHHHHHHHHHH-HH
Confidence 23566777777 677654111 11 0113689999999999999999999999753 23
Q ss_pred hhh-HhhhhcccCCCCCCCCCC
Q psy15216 374 SYS-EKVLDHYENPRNVGVFEK 394 (2602)
Q Consensus 374 ~y~-~~~~~hy~~p~n~g~~~~ 394 (2602)
.|. +..+....++.-++.+++
T Consensus 449 ~~~~~~~~~~~p~~~~~~~~~~ 470 (481)
T PRK04366 449 AKENPELVKEAPHNTPVRRLDE 470 (481)
T ss_pred HHhCcHhHhhCCCCCCCCCccc
Confidence 332 333444444444555544
|
|
| >PRK05387 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.8e-21 Score=247.01 Aligned_cols=314 Identities=15% Similarity=0.137 Sum_probs=227.0
Q ss_pred eeeeccCCC--CCCCHHHHHHHHHHHhh-ccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHH
Q psy15216 1394 TNIVFKDAT--TPIDPRVVDKMIPYLRV-QFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLA 1470 (2602)
Q Consensus 1394 ~~v~L~~~~--~~~~~~v~eal~~~l~~-~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~a 1470 (2602)
+.+.++.+. .++++.+.+++.+.+.. ...+|+. ...++|+++++++++++++|++|+|+++++.++
T Consensus 25 ~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~~y~~~-----------~~~~lr~aia~~~~~~~~~I~it~G~~~al~~~ 93 (353)
T PRK05387 25 KLIKLNTNENPYPPSPKVLEAIRAALGDDLRLYPDP-----------NADALRQAIAAYYGLDPEQVFVGNGSDEVLAHA 93 (353)
T ss_pred ceeeccCCCCCCCCCHHHHHHHHHHhhhhhhcCCCC-----------cHHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHH
Confidence 456665433 34577888898877653 2233432 135899999999999999999999999999999
Q ss_pred HHhhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccCCceEEEEeccccccccccC
Q psy15216 1471 IKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP 1550 (2602)
Q Consensus 1471 l~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~ 1550 (2602)
++++. ++||+|++++|.|+.+....+.. |++++.++.++++.+|++++++ .++++++++|+||||.++|
T Consensus 94 ~~~l~----~~gd~vlv~~P~y~~~~~~~~~~---g~~~~~v~~~~~~~~d~~~l~~----~~~~v~~~~P~NPtG~~~~ 162 (353)
T PRK05387 94 FLAFF----NHDRPLLFPDITYSFYPVYAGLY---GIPYEEIPLDDDFSIDVEDYLR----PNGGIIFPNPNAPTGIALP 162 (353)
T ss_pred HHHhc----CCCCEEEEeCCCHHHHHHHHHHc---CCEEEEeecCCCCCCCHHHHHh----cCCEEEEeCCCCCCCCCCC
Confidence 99987 89999999999998877665554 9999999988788899999874 4688999999999999999
Q ss_pred hHHHHHHhhhc-CCEEEEeccccc-C-cccccC-CCCCccEEEEccccccCCCc--eEEEEEecCCCCccccccccCCcc
Q psy15216 1551 ILEIGELCRSK-GVIFHCDAAQAV-G-KIDINI-QNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHE 1624 (2602)
Q Consensus 1551 l~~I~~ia~~~-gi~vivD~a~~~-g-~~~~~l-~~~~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~~g~~~~ 1624 (2602)
.+++.++++.+ ++++|+|++|.. + .....+ ...+..+++.|++|.+|++| +||++.++++++.+.....
T Consensus 163 ~~~~~~l~~~~~~~~livDe~y~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~~~~~~~~~~~l~~~~~----- 237 (353)
T PRK05387 163 LAEIERILAANPDSVVVIDEAYVDFGGESAIPLIDRYPNLLVVQTFSKSRSLAGLRVGFAIGHPELIEALNRVKN----- 237 (353)
T ss_pred HHHHHHHHHhCCCcEEEEeCcccccCCcchHHHHhhCCCEEEEEehhHhhcchhhhceeeecCHHHHHHHHHhhc-----
Confidence 99999999875 999999999742 1 111111 12234688889999888777 8999998877666543321
Q ss_pred ccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecCCcHHHHH
Q psy15216 1625 YGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLM 1704 (2602)
Q Consensus 1625 ~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 1704 (2602)
.+..++.+...+.++..++.. ...+++.++++.++++++.+.|.+ . ++.+. ++. .....+.++..+..++..
T Consensus 238 -~~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~-~~~---~~~~~~~~~~~~~~~~~~ 309 (353)
T PRK05387 238 -SFNSYPLDRLAQAGAIAAIED-EAYFEETRAKVIATRERLVEELEA-L-GFEVL-PSK---ANFVFARHPSHDAAELAA 309 (353)
T ss_pred -cCCCCCcCHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHH-C-CCeEC-CCc---CcEEEEECCCCCHHHHHH
Confidence 112335566666666666642 234567788888899999999987 3 66543 221 122223333335566766
Q ss_pred hc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1705 AI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1705 ~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
.| +||.++. |..+ ...+++|++++ +.+++++++++|++
T Consensus 310 ~l~~~gi~v~~---~~~~----------------~~~~~iRis~~---~~~~~~~~~~~L~~ 349 (353)
T PRK05387 310 KLRERGIIVRH---FNKP----------------RIDQFLRITIG---TDEEMEALVDALKE 349 (353)
T ss_pred HHHHCCEEEEE---CCCC----------------CCCCeEEEEeC---CHHHHHHHHHHHHH
Confidence 66 7999863 2211 01278999997 67999999999986
|
|
| >COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.4e-21 Score=233.28 Aligned_cols=335 Identities=16% Similarity=0.154 Sum_probs=239.8
Q ss_pred CCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCE
Q psy15216 1405 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKH 1484 (2602)
Q Consensus 1405 ~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~ 1484 (2602)
...+.++++.+.++..|..++ ....++++++++++|+. +.+.++|+|.|++++++++. .+|||+
T Consensus 13 i~~~e~~~v~~vl~sg~i~~G-----------~~v~~FE~~~ae~~G~k--~ava~~sgT~AL~laL~al~---ig~GDe 76 (374)
T COG0399 13 IGEEELAAVQEVLKSGWLTGG-----------PFVRRFEQAFAEYLGVK--YAVAVSSGTAALHLALLALA---IGPGDE 76 (374)
T ss_pred cchHHHHHHHHHHHcCCeecC-----------hHHHHHHHHHHHHhCCC--eEEEecChHHHHHHHHHhcC---CCCCCE
Confidence 456778888898887555443 25788999999999976 78999999999999999776 689999
Q ss_pred EEEcCCCCcchHHHHHHHHhCCcEEEEeccCC-CCCcChhHHHhhccCCceEEEEeccccccccccChHHHHHHhhhcCC
Q psy15216 1485 IITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGV 1563 (2602)
Q Consensus 1485 Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~-~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~~ia~~~gi 1563 (2602)
|++|+.+|.++..++.+. |+++++|++|+ ++.+|++.|+++|+++||+|+.+|. .|...|+++|.++|++||+
T Consensus 77 VI~ps~TfvATan~i~~~---Ga~PVFvDid~~T~nid~~~ie~aIt~~tKAIipVhl---~G~~~dm~~i~~la~~~~l 150 (374)
T COG0399 77 VIVPSFTFVATANAVLLV---GAKPVFVDIDPDTLNIDPDLIEAAITPRTKAIIPVHL---AGQPCDMDAIMALAKRHGL 150 (374)
T ss_pred EEecCCchHHHHHHHHHc---CCeEEEEecCCcccCCCHHHHHHHcccCCeEEEEehh---ccCCCCHHHHHHHHHHcCC
Confidence 999999999998888877 99999999997 5889999999999999999999999 9999999999999999999
Q ss_pred EEEEecccccCcccccCCCCC--ccEEEEccc--cccCCCceEEEEEecC-CCCccccccccCCcc---ccCCCCCcch-
Q psy15216 1564 IFHCDAAQAVGKIDINIQNYK--VDLMSFSAH--KIYGPKGIGALYIRRN-PRTRIEAQIHGGGHE---YGLRSGTLAT- 1634 (2602)
Q Consensus 1564 ~vivD~a~~~g~~~~~l~~~~--~D~~v~S~~--K~~gp~G~G~l~~~~~-~~~~l~~~~~g~~~~---~~~~~gt~~~- 1634 (2602)
+||.|+||+.|..-- -...| -|+-++||| |.++....|+++.+++ +.++++.+...|... .++..-.+.+
T Consensus 151 ~vIEDaAqa~Ga~y~-gk~vGt~Gd~~~fSF~~~K~ittgEGGav~tnd~ela~k~~~lr~hG~~~~~~~~y~~~~~G~N 229 (374)
T COG0399 151 PVIEDAAQAHGATYK-GKKVGSFGDIGAFSFHATKNLTTGEGGAVVTNDEELAEKARSLRNHGLSRDAVFKYLHEELGYN 229 (374)
T ss_pred eEEEEcchhccCeec-CcccccccceEEEEecCCCCccccCceEEEeCCHHHHHHHHHHHHhCcCCCccccceeeecccc
Confidence 999999999998532 22333 477788886 6554333488888764 334443332222211 1222111111
Q ss_pred hHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCC--CCCceEEEEEec--CCcHHHHHhc--C
Q psy15216 1635 HQIVGMGEAFRLAR-IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNN--RIPHNLNISFNF--IEGESLLMAI--K 1707 (2602)
Q Consensus 1635 ~~~~al~~aL~~~~-~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~--~~~~~~~~~~~~--~~~~~~~~~L--~ 1707 (2602)
..+.-+.+|+.+.+ +.+++..++.+++++++.+.|.+ ++++.+...+.. ...+...+.++. .+.+.+...| +
T Consensus 230 ~rm~~iqAAigl~QL~~l~~~~~~R~~~a~~Y~~~l~~-~~~~~~p~~~~~~~~~~~~~~i~~~~~~~~R~~l~~~L~~~ 308 (374)
T COG0399 230 YRLTEIQAAIGLAQLERLDEINERRREIAQIYAEALKG-LPGITLPPEPDGAVHAWHLYTILVDEEGISRDALMESLKEA 308 (374)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCccccCCCCCceeeeeeeEEEecCCCCCHHHHHHHHHhC
Confidence 22333455555333 45788889999999999999987 666665544433 223333333332 3456677777 5
Q ss_pred CEEEccccccCCCCCChhHHHH------HcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1708 DIAVSSGSACTSASLEPSYVLR------ALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1708 gI~v~~g~~~~~~~~~~~~~~~------~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
||. ...++.+.+.++.|... .++..+......++|++++..+.+|+++++++|++.
T Consensus 309 gi~--~~~~~~P~~~~~~~~~~~~~~~~~lp~ae~~~~r~l~LP~~p~l~~~~~~~V~~~l~~~ 370 (374)
T COG0399 309 GVG--AVVYFRPLHLQPAYRQLGYFPEGDLPNAEDLSERILSLPLHPNLSEEDVDRVIEALKEV 370 (374)
T ss_pred CCC--ceEEeeccccchhhhcccccccCCCchHHHHhhCeEEccCCCCCCHHHHHHHHHHHHHH
Confidence 555 33444443333333222 234444555688999999999999999999999973
|
|
| >PRK07366 succinyldiaminopimelate transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.3e-21 Score=251.25 Aligned_cols=313 Identities=13% Similarity=0.114 Sum_probs=218.9
Q ss_pred CCCHHHHHHHHHHHhhh--cCCCCCCCcchhhhHHHHHHHHHHHHHHHh----C--CCCC-cEEEeCCHHHHHHHHHHhc
Q psy15216 8 PIDPRVVDKMIPYLRVQ--FGNPASRNHIYGWTAEKAIEKARNEVAQLI----Y--ADPR-EIIWTSGATESNNLAIKGA 78 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~--~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~----g--~~~~-~Iv~t~g~T~al~~~~~~l 78 (2602)
++|+.+.+++.+.+... +.++. .....++|+++|+++ | ++++ +|++|+|+++|+.+++.++
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~Y~~----------~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~Gs~~al~~~~~~l 112 (388)
T PRK07366 43 PAPAHALEAIAQSLHDPSTHGYLL----------FHGTLDFREAAAQWYEQRFGLAVDPETEVLPLIGSQEGTAHLPLAV 112 (388)
T ss_pred CCCHHHHHHHHHHHhCcccCCCCC----------CCCCHHHHHHHHHHHHHhhCCcCCCcCeEEECCCcHHHHHHHHHHh
Confidence 56788888888776421 11211 112355677777766 4 5777 6999999999999999998
Q ss_pred ccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCC--CccChHHHHhhccCCceEEEEecccCcccccccHH
Q psy15216 79 AHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN--GLITLSQLEEKICSDTILVSVMLVNNEIGVIQPIL 156 (2602)
Q Consensus 79 ~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~--~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~ 156 (2602)
. ++||.|++++|.|+.+...++.. |++++.++.+++ +.+|++++++.+.++++++++++||||||.+++.+
T Consensus 113 ~----~~gd~Vlv~~P~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~p~NPTG~~~s~~ 185 (388)
T PRK07366 113 L----NPGDFALLLDPGYPSHAGGVYLA---GGQIYPMPLRAENDFLPVFADIPTEVLAQARLMVLSYPHNPTTAIAPLS 185 (388)
T ss_pred C----CCCCEEEEcCCCCcchHHHHHhc---CCEEEEEECCCccCCCCCHHHHHHhhcccceEEEEeCCCCCCCccCCHH
Confidence 7 79999999999999998777766 999999998753 45788999888888899999999999999999955
Q ss_pred ---HHHHHHHhcCCEEEEeccccccc----c-cccC---CCCC-ccEEEeccccccCCCC--cEEEEEecCCCCccccee
Q psy15216 157 ---EIGELCRSKGVIFHCDAAQAVGK----I-DINI---QNYK-VDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQI 222 (2602)
Q Consensus 157 ---~I~~la~~~g~~livD~a~a~g~----~-~~dl---~~~~-~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~ 222 (2602)
+|+++|++||++||+|+++..-. . ...+ .... .-+++.||||.+|++| +||+++++++++.+....
T Consensus 186 ~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~v~~~~li~~l~~~~ 265 (388)
T PRK07366 186 FFQEAVAFCQQHDLVLVHDFPYVDLVFDGEVEPPSILQADPEKSVSIEFFTLSKSYNMGGFRIGFAIGNAQLIQALRQVK 265 (388)
T ss_pred HHHHHHHHHHHcCeEEEEecchhhcccCCCCCCCChhhCCCCcccEEEEeecccccCCcchhheehcCCHHHHHHHHHHH
Confidence 56778899999999999975321 1 1112 1111 2367889999999888 899999988877765433
Q ss_pred cCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEccc-
Q psy15216 223 HGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI- 301 (2602)
Q Consensus 223 ~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~- 301 (2602)
.. +..++++..... +.+++.....++++.++++++.++++.+.|.+ . ++....+.. ...+++.++..
T Consensus 266 ~~------~~~~~~~~~~~~-a~~~l~~~~~~l~~~~~~~~~~r~~l~~~L~~-~-~~~~~~p~~---g~f~~~~~~~~~ 333 (388)
T PRK07366 266 AV------VDFNQYRGILNG-AIAALTGPQATVQQTVQIFRQRRDAFINALHQ-I-GWPVPLPEA---TMYVWAKLPEPW 333 (388)
T ss_pred hh------cccCCCHHHHHH-HHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH-C-CCcccCCCe---eEEEEEECCccc
Confidence 11 111222222222 23444322456788888899999999999977 3 554332211 12233333321
Q ss_pred --ChhHHHHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 302 --EGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 302 --~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
+..++...+ +||.+.+|..|... ..+++||+++. ++++++..+++|++
T Consensus 334 ~~~~~~~~~~l~~~~gv~v~pg~~f~~~-----------------~~~~iRi~~~~--~~~~l~~~l~rl~~ 386 (388)
T PRK07366 334 QGNSVEFCTQLVAQTGVAASPGSGFGKS-----------------GEGYVRFALVH--DPDILEEAVERIAA 386 (388)
T ss_pred CCCHHHHHHHHHHhCCEEEeCchHhCcC-----------------CCCeEEEEecC--CHHHHHHHHHHHHH
Confidence 345565554 59999998766421 13799999973 68999999998874
|
|
| >PLN02187 rooty/superroot1 | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-20 Score=247.85 Aligned_cols=313 Identities=16% Similarity=0.154 Sum_probs=221.4
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHh------CCCCCcEEEeCCHHHHHHHHHHhhhhh
Q psy15216 1404 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI------YADPREIIWTSGATESNNLAIKGAAHF 1477 (2602)
Q Consensus 1404 ~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~------g~~~~~iv~t~gaT~al~~al~~l~~~ 1477 (2602)
+.++.+.+++.+.+.....+. |.. .....++|+++++++ ++++++|++|+|+++|+.+++.++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~----Y~~----~~G~~~lR~aiA~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~-- 152 (462)
T PLN02187 83 RTCIEAEDAVVDVLRSGKGNS----YGP----GAGILPARRAVADYMNRDLPHKLTPEDIFLTAGCNQGIEIVFESLA-- 152 (462)
T ss_pred CCCHHHHHHHHHHHhCCCCCC----CCC----CCChHHHHHHHHHHHHHhcCCCCCcccEEEeCCHHHHHHHHHHHhc--
Confidence 456778888888776421111 111 112567888888887 3588999999999999999999987
Q ss_pred hccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccC--CCCCcChhHHHhhccCCceEEEEeccccccccccC---hH
Q psy15216 1478 YKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK--NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---IL 1552 (2602)
Q Consensus 1478 ~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~--~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~---l~ 1552 (2602)
+|||+|++++|+|+.+....... |++++.++.. .++.+|+++|+++++++++++++++|+||||.+++ ++
T Consensus 153 --~pGd~Vlv~~P~y~~y~~~~~~~---g~~~~~~~l~~~~~~~~d~~~l~~~~~~~~~~v~i~nP~NPTG~v~s~e~l~ 227 (462)
T PLN02187 153 --RPNANILLPRPGFPHYDARAAYS---GLEVRKFDLLPEKEWEIDLEGIEAIADENTVAMVVINPNNPCGNVYSHDHLK 227 (462)
T ss_pred --CCCCEEEEeCCCCccHHHHHHHc---CCEEEEEeCccccCCccCHHHHHHhcCCCcEEEEEeCCCCCCCCccCHHHHH
Confidence 89999999999999986655544 9999999874 35779999999999999999999999999999999 77
Q ss_pred HHHHHhhhcCCEEEEecccccCc----ccccCC---CCCccEEEEccccccCCCc--eEEEEEec-C-C---CCcccccc
Q psy15216 1553 EIGELCRSKGVIFHCDAAQAVGK----IDINIQ---NYKVDLMSFSAHKIYGPKG--IGALYIRR-N-P---RTRIEAQI 1618 (2602)
Q Consensus 1553 ~I~~ia~~~gi~vivD~a~~~g~----~~~~l~---~~~~D~~v~S~~K~~gp~G--~G~l~~~~-~-~---~~~l~~~~ 1618 (2602)
+|+++|++||+++|+|++|+.-. ...++. ....-+++.|++|.|+++| +||+++++ + . ++.+....
T Consensus 228 ~i~~~a~~~~i~iI~DE~Y~~l~f~~~~~~s~~~~~~~~~vi~l~SfSK~f~~pGlRiG~~v~~~p~~~~~~~~~~~~~~ 307 (462)
T PLN02187 228 KVAETARKLGIMVISDEVYDRTIFGDNPFVSMGKFASIVPVLTLAGISKGWVVPGWKIGWIALNDPEGVFETTKVLQSIK 307 (462)
T ss_pred HHHHHHHHCCCEEEEeccccccccCCCCceeHHHhccCCcEEEEecchhhcCCccceeEEEEecCchhHHHHHHHHHHHH
Confidence 88999999999999999986311 111221 1112467789999988888 89999853 2 1 11222211
Q ss_pred ccCCccccCCC-CCcchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEec
Q psy15216 1619 HGGGHEYGLRS-GTLATHQIVGMGEAFRL-ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF 1696 (2602)
Q Consensus 1619 ~g~~~~~~~~~-gt~~~~~~~al~~aL~~-~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~ 1696 (2602)
. .+.. ..++...+.++.++|.. ....+++.++.+++.++++.+.|.+ ++++..... |...+|.+..
T Consensus 308 ~------~~~~~~~~s~~~Q~a~~~~L~~~~~~~l~~~~~~l~~~r~~l~~~L~~-~~~~~~~~~-----P~gg~fl~~~ 375 (462)
T PLN02187 308 Q------NLDVTPDPATIIQAALPAILEKADKNFFAKKNKILKHNVDLVCDRLKD-IPCVVCPKK-----PESCTYLLTK 375 (462)
T ss_pred H------hccccCCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhh-CCCCcCCCC-----CCEeEEEEee
Confidence 0 0111 13455666667677752 3356788888899999999999987 544322211 2222233221
Q ss_pred --------C-CcHHHHHhc---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1697 --------I-EGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1697 --------~-~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
. +..++...+ +||.+.+|..|+.. +++||+++. ..+.++..+++|.+
T Consensus 376 l~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~fg~~-------------------~~iRis~~~--~~e~l~~al~rL~~ 434 (462)
T PLN02187 376 LELSLMDNIKDDIDFCVKLAREENLVFLPGDALGLK-------------------NWMRITIGV--EAHMLEDALERLKG 434 (462)
T ss_pred cChhhCCCCCCHHHHHHHHHhhCCEEEECccccCCC-------------------CeEEEEeCC--CHHHHHHHHHHHHH
Confidence 1 233444333 79999999877432 899999984 67889999999986
|
|
| >TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-20 Score=247.12 Aligned_cols=315 Identities=16% Similarity=0.185 Sum_probs=227.4
Q ss_pred CCCHHHHHHHHHHHhhc-cCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCC
Q psy15216 1404 PIDPRVVDKMIPYLRVQ-FGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRG 1482 (2602)
Q Consensus 1404 ~~~~~v~eal~~~l~~~-~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~g 1482 (2602)
..++++++++.+.+... .+++.+ .+..+. .....++|+.+++++|.+ ++++++|+++|++.++.++. ++|
T Consensus 52 ~~~~~v~~~~~~~~~~~~~~~~~s-~~~~G~--~~~~~~le~~ia~~~g~~--~~ii~~~~~~a~~~~~~~l~----~~g 122 (393)
T TIGR01822 52 SSHPDLIQAAKDALDEHGFGMSSV-RFICGT--QDIHKELEAKIAAFLGTE--DTILYASCFDANGGLFETLL----GAE 122 (393)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCc-CcccCC--hHHHHHHHHHHHHHhCCC--cEEEECchHHHHHHHHHHhC----CCC
Confidence 55788999999998773 555554 233232 456788999999999974 57777899999999888876 899
Q ss_pred CEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccC------CceEEEEeccccccccccChHHHHH
Q psy15216 1483 KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS------DTILVSVMLVNNEIGVIQPILEIGE 1556 (2602)
Q Consensus 1483 d~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~------~t~lv~l~~~~n~tG~~~~l~~I~~ 1556 (2602)
|+|++++++|+++...+..+ +.+...++ .+|++++++++++ +|++|++.+++|+||.+.|+++|.+
T Consensus 123 d~vi~~~~~~~s~~~~~~~~---~~~~~~~~-----~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~tG~~~~l~~i~~ 194 (393)
T TIGR01822 123 DAIISDALNHASIIDGVRLC---KAKRYRYA-----NNDMADLEAQLKEARAAGARHRLIATDGVFSMDGVIAPLDEICD 194 (393)
T ss_pred CEEEEeccccHHHHHHHHhc---CCceEEeC-----CCCHHHHHHHHHhhhhcCCCceEEEEeCCccCCCCcCCHHHHHH
Confidence 99999999999988777655 44443332 3789999998874 7889999999999999999999999
Q ss_pred HhhhcCCEEEEecccccCcccc---------cCCCCCccEEEEcccccc-CCCceEEEEEecCCCCccccccccCCcccc
Q psy15216 1557 LCRSKGVIFHCDAAQAVGKIDI---------NIQNYKVDLMSFSAHKIY-GPKGIGALYIRRNPRTRIEAQIHGGGHEYG 1626 (2602)
Q Consensus 1557 ia~~~gi~vivD~a~~~g~~~~---------~l~~~~~D~~v~S~~K~~-gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~ 1626 (2602)
+|++||+++++|++|+.|.... ++. .++|++++|+||++ |++ +||+++++++++.+.+... ..
T Consensus 195 la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~-~~~di~~~s~sK~l~g~r-~G~~~~~~~~~~~l~~~~~-----~~ 267 (393)
T TIGR01822 195 LADKYDALVMVDECHATGFLGPTGRGSHELCGVM-GRVDIITGTLGKALGGAS-GGFTTARKEVVELLRQRSR-----PY 267 (393)
T ss_pred HHHHcCCEEEEECCccccCcCCCCCchHHhcCCC-CCCeEEEEEChHHhhCCC-cEEEEeCHHHHHHHHHhCc-----cc
Confidence 9999999999999998775421 121 25789999999954 565 5999998877666543211 01
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEec-CCcHHHHHh
Q psy15216 1627 LRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGESLLMA 1705 (2602)
Q Consensus 1627 ~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 1705 (2602)
...++.+...+.++.++++... ..++.++++.++++++++.|.+ .++.+..+ . .+ +..+.++. .+..++...
T Consensus 268 ~~~~~~~~~~~~a~~~al~~~~-~~~~~~~~~~~~~~~l~~~L~~--~g~~~~~~-~--~~-~~~i~~~~~~~~~~l~~~ 340 (393)
T TIGR01822 268 LFSNSLPPAVVGASIKVLEMLE-ASNELRDRLWANTRYFRERMEA--AGFDIKPA-D--HP-IIPVMLYDAVLAQRFARR 340 (393)
T ss_pred eecCCCCHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHH--cCCCCCCC-C--CC-EEEEEeCCHHHHHHHHHH
Confidence 1234555555666667776543 3567788999999999999977 36554322 1 12 22333332 234566666
Q ss_pred c--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1706 I--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1706 L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
| +||.+. +..+... ......+|+|++.++|.+||++++++|++.
T Consensus 341 L~~~gI~v~-~~~~~~~---------------~~~~~~iRis~~~~~t~edi~~~~~~l~~~ 386 (393)
T TIGR01822 341 LLEEGIYVT-GFFYPVV---------------PKGQARIRVQISAAHTEEQLDRAVEAFTRI 386 (393)
T ss_pred HHHCCeeEe-eeCCCCC---------------CCCCceEEEEECCCCCHHHHHHHHHHHHHH
Confidence 5 788887 4333110 001246999999999999999999999873
|
This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function. |
| >PRK00451 glycine dehydrogenase subunit 1; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.1e-21 Score=252.53 Aligned_cols=302 Identities=17% Similarity=0.201 Sum_probs=225.6
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHHHH-HhCCcEEEEe
Q psy15216 38 TAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDGFRVTYL 116 (2602)
Q Consensus 38 ~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~-~~~G~~v~~v 116 (2602)
...+...+.++++++++|++++++++++|+|++++.++.++. ..+||+|++++++|+++...+..+ +..|++++.+
T Consensus 109 g~~~~~~e~~~~la~l~g~~~~~v~~~~g~t~~~~~~~~a~~---~~~g~~Vlv~~~~~~~~~~~~~~~~~~~G~~~~~v 185 (447)
T PRK00451 109 GTLQAIFEYQTMICELTGMDVANASMYDGATALAEAALMAVR---ITKRKKVLVSGAVHPEYREVLKTYLKGQGIEVVEV 185 (447)
T ss_pred HHHHHHHHHHHHHHHHhCCCcceEEecCcHHHHHHHHHHHHH---hcCCCEEEEeCccCHHHHHHHHHHHHhCCcEEEEe
Confidence 355667777889999999988899999999999999988875 368999999999999999888764 4569999999
Q ss_pred ccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHhcCCEEEE--ecccccccccccCCCCCccEEEe
Q psy15216 117 KPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHC--DAAQAVGKIDINIQNYKVDLMSF 194 (2602)
Q Consensus 117 ~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~~g~~liv--D~a~a~g~~~~dl~~~~~D~~~~ 194 (2602)
+++++ .+|+++++++++++|++|++++| |+||.+.|+++|+++||++|+++++ |.. +.|... ...++++|++++
T Consensus 186 ~~~~~-~~d~~~l~~~i~~~t~~v~l~~p-n~tG~v~~l~~I~~~a~~~~~~~iv~~d~~-~~g~~~-~~~~~~~D~~~~ 261 (447)
T PRK00451 186 PYEDG-VTDLEALEAAVDDDTAAVVVQYP-NFFGVIEDLEEIAEIAHAGGALFIVGVDPV-SLGLLK-PPGEYGADIVVG 261 (447)
T ss_pred cCCCC-CCCHHHHHHhcCCCeEEEEEECC-CCCCeeCCHHHHHHHHHHCCCEEEEEcChH-HhccCC-CcccCCCCEEEE
Confidence 99887 89999999999999999999998 8999999999999999999999998 543 444433 235678999999
Q ss_pred ccccc-----cCCCCcEEEEEecCCCCcccceecCCCcc-----------------ccccccCcchhH---H--HHHHHH
Q psy15216 195 SAHKI-----YGPKGIGALYIRRNPRTRIEAQIHGGGHE-----------------YGLRSGTLATHQ---I--VGMGEA 247 (2602)
Q Consensus 195 S~~K~-----~Gp~G~G~l~~~~~~~~~l~~~~~g~~~~-----------------~~~~~gt~~~~~---~--~al~~a 247 (2602)
|.||+ +|.+|+||+++++++++.+.+...++... .++..++.++.. + .+...+
T Consensus 262 s~~k~~~~~~~~Gpg~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aaa~~ 341 (447)
T PRK00451 262 EGQPLGIPLSFGGPYLGFFATRKKLVRQMPGRLVGETVDADGKRGFVLTLQAREQHIRREKATSNICTNQALNALAAAIY 341 (447)
T ss_pred CCCcCCCCCCCCCCCchHHHhhHHHHhhCCCCEeeeecccCCCeeeEeeccccccccccccccccccccHHHHHHHHHHH
Confidence 88874 45557999999998888776654444210 122334444322 2 223234
Q ss_pred HH-HHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcccChhHHHHHh--CCeEEcc-cccCCC
Q psy15216 248 FR-LARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDIAVSS-GSACTS 323 (2602)
Q Consensus 248 l~-~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~v~~-g~~~~~ 323 (2602)
++ +...+++++.+++.++++++.++|.+ ++++++... . ....+.+.++ .+..++.++| ++|.+.. +..+.+
T Consensus 342 l~~~~~~g~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~-~--~~~~~~v~~~-~~~~~~~~~L~~~gi~~~~~~~~~~~ 416 (447)
T PRK00451 342 MSLLGPEGLRELAEQNHQKAHYLAERLAE-IGGVELFDG-P--FFNEFVVRLP-KPAEEVNEALLEKGILGGYDLGRYYP 416 (447)
T ss_pred HHHHCHHHHHHHHHHHHHHHHHHHHHHhh-cCCEEecCC-C--eEEEEEEecC-CCHHHHHHHHHhcCCCCCcccccccC
Confidence 44 33467899999999999999999987 678887621 1 1111223332 3557777777 5665321 111111
Q ss_pred CCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 324 ASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 324 ~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
+. .+++|+|++.++|++|+++++++|++
T Consensus 417 ------------~~-----~~~~rvs~~~~~t~e~i~~l~~~L~~ 444 (447)
T PRK00451 417 ------------EL-----GNHLLVCVTEKRTKEDIDALVAALGE 444 (447)
T ss_pred ------------Cc-----CCEEEEecCCCCCHHHHHHHHHHHHH
Confidence 11 26899999999999999999999985
|
|
| >PRK09276 LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.9e-21 Score=248.16 Aligned_cols=314 Identities=14% Similarity=0.112 Sum_probs=222.0
Q ss_pred CCCCHHHHHHHHHHHhhc--cCCCCCccchhHHHHHHHHHHHHHHHHHHh----C--CCCC-cEEEeCCHHHHHHHHHHh
Q psy15216 1403 TPIDPRVVDKMIPYLRVQ--FGNPASRNHIYGWTAEKAIEKARNEVAQLI----Y--ADPR-EIIWTSGATESNNLAIKG 1473 (2602)
Q Consensus 1403 ~~~~~~v~eal~~~l~~~--~~np~~~~~~~~~~~~~~~~~lr~~ia~~~----g--~~~~-~iv~t~gaT~al~~al~~ 1473 (2602)
.++++.+.+++.+.+... ..++.. ....++|+++++++ | ++++ +|++|+|+++++..++.+
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~Y~~~----------~G~~~lr~aia~~~~~~~g~~~~~~~~ii~t~G~~~~i~~~~~~ 112 (385)
T PRK09276 43 LPTPDHIIEAMCKAVEDPENHQYPSY----------EGMLEFRKAVADWYKRRFGVELDPETEVISLIGSKEGIAHIPLA 112 (385)
T ss_pred CCCCHHHHHHHHHHHhCCCCCCCCCC----------CCcHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHHHHHHHH
Confidence 355778888888877541 122221 11456777777776 4 3565 589999999999999998
Q ss_pred hhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCC--CCCcChhHHHhhccCCceEEEEeccccccccccC-
Q psy15216 1474 AAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP- 1550 (2602)
Q Consensus 1474 l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~- 1550 (2602)
+. ++||+|++++|.|+.+....+.. |++++.++.+. ++.+|++++++++.+++++|++++|+||||.++|
T Consensus 113 ~~----~~gd~Vl~~~P~y~~~~~~~~~~---g~~~~~v~~~~~~g~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~ 185 (385)
T PRK09276 113 FV----NPGDVVLVPDPGYPVYKIGTIFA---GGEPYFMPLKEENGFLPDLDAIPEDVAKKAKLMFINYPNNPTGAVADL 185 (385)
T ss_pred hC----CCCCEEEEcCCCCcChHHHHHHc---CCEEEEEecCCCCCCcCCHHHHHHhccccceEEEEeCCCCCCCCCCCH
Confidence 87 89999999999999987766655 99999999864 3558999999999999999999999999999999
Q ss_pred --hHHHHHHhhhcCCEEEEecccccCc----ccccC---CC-CCccEEEEccccccCCCc--eEEEEEecCCCCcccccc
Q psy15216 1551 --ILEIGELCRSKGVIFHCDAAQAVGK----IDINI---QN-YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQI 1618 (2602)
Q Consensus 1551 --l~~I~~ia~~~gi~vivD~a~~~g~----~~~~l---~~-~~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~ 1618 (2602)
+++|+++|++||+++|+|++|.... .+..+ .. .+..+++.||+|.+|++| +||+++++++++.+....
T Consensus 186 ~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~i~~~~l~~~~~~~~ 265 (385)
T PRK09276 186 EFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYKPPSFLEVPGAKDVGIEFHSLSKTYNMTGWRIGFAVGNADLIAGLGKVK 265 (385)
T ss_pred HHHHHHHHHHHHCCcEEEEecchhheecCCCCCCChhccCCCcCCEEEEecchhhcCCcchhheeeeCCHHHHHHHHHHH
Confidence 5788889999999999999986321 11121 11 123577889999999889 999999887776665432
Q ss_pred ccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEec-C
Q psy15216 1619 HGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-I 1697 (2602)
Q Consensus 1619 ~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~-~ 1697 (2602)
. ....+.+.+.+.++..++......+++.++++++.++++.+.|.+ . ++.+..+... ....+.++. .
T Consensus 266 ~-------~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-~~~~~~~~~~---~~~~v~~~~~~ 333 (385)
T PRK09276 266 S-------NVDSGVFQAIQEAGIAALNGPQEVVEELRKIYQERRDILVEGLRK-L-GLEVEPPKAT---FYVWAPVPKGY 333 (385)
T ss_pred h-------hccCCCCHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHh-C-CCcccCCCcc---eEEEEECCCCC
Confidence 1 111223334444455566433445677788888999999999987 3 6555432111 112222222 3
Q ss_pred CcHHHHHhc---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1698 EGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1698 ~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
+..++...| +||.+++|..|... ..+++||+++. +.+++..+++.|.+
T Consensus 334 ~~~~l~~~ll~~~gi~v~~g~~f~~~-----------------~~~~~Ris~~~--~~~~l~~~l~~l~~ 384 (385)
T PRK09276 334 TSAEFATLLLDKAGVVVTPGNGFGEY-----------------GEGYFRIALTV--PDERIEEAVERIKK 384 (385)
T ss_pred CHHHHHHHHHHhCCEEECCchhhCCC-----------------CCCeEEEEeCC--CHHHHHHHHHHHhh
Confidence 455666554 69999998876432 12789999973 67888888887764
|
|
| >PRK06358 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.6e-21 Score=242.77 Aligned_cols=304 Identities=17% Similarity=0.175 Sum_probs=222.0
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCC
Q psy15216 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK 87 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd 87 (2602)
++|+.+.+++.+.+.....+|.. ...++|+++++++++++++|++|+|+++++..++.++. + +
T Consensus 32 ~~p~~~~~a~~~~~~~~~~Y~~~-----------~~~~lr~~ia~~~~~~~~~i~it~Ga~~~l~~~~~~~~-----~-~ 94 (354)
T PRK06358 32 GVPESLKQAITENLDKLVEYPDP-----------DYLELRKRIASFEQLDLENVILGNGATELIFNIVKVTK-----P-K 94 (354)
T ss_pred CCCHHHHHHHHHHHHhhhcCCCc-----------cHHHHHHHHHHHhCCChhhEEECCCHHHHHHHHHHHhC-----C-C
Confidence 45788899988876554444432 24688999999999999999999999999999998753 3 5
Q ss_pred EEEEcCCCCcccHHHHHHHHhCCcEEEEeccCC--CCccChHHHHhhccCCceEEEEecccCccccccc---HHHHHHHH
Q psy15216 88 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIGELC 162 (2602)
Q Consensus 88 ~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~---l~~I~~la 162 (2602)
.|+++.|.|+.+...++.. |++++.++.+. ++.+| +++.+.+.++++++++++||||||..++ +++|.++|
T Consensus 95 ~v~i~~P~y~~~~~~~~~~---g~~~~~~~~~~~~~~~~d-~~~~~~~~~~~~~v~~~~P~NPtG~~~~~~~~~~l~~~a 170 (354)
T PRK06358 95 KVLILAPTFAEYERALKAF---DAEIEYAELTEETNFAAN-EIVLEEIKEEIDLVFLCNPNNPTGQLISKEEMKKILDKC 170 (354)
T ss_pred cEEEecCChHHHHHHHHHc---CCeeEEEeCccccCCCcc-HHHHHhhccCCCEEEEeCCCCCCCCccCHHHHHHHHHHH
Confidence 8999999999877666544 99999998864 34688 6666777778999999999999999998 66777888
Q ss_pred HhcCCEEEEecccccccc---c---cc-CCCCCccEEEeccccccCCCC--cEEEEEe-cCCCCcccceecCCCcccccc
Q psy15216 163 RSKGVIFHCDAAQAVGKI---D---IN-IQNYKVDLMSFSAHKIYGPKG--IGALYIR-RNPRTRIEAQIHGGGHEYGLR 232 (2602)
Q Consensus 163 ~~~g~~livD~a~a~g~~---~---~d-l~~~~~D~~~~S~~K~~Gp~G--~G~l~~~-~~~~~~l~~~~~g~~~~~~~~ 232 (2602)
++|++++|+|+++..-.. + +. +...+.-+++.|++|.+|++| +||++++ +.+++.+.... .
T Consensus 171 ~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~gl~G~RiG~lv~~~~~~~~~~~~~~---------~ 241 (354)
T PRK06358 171 EKRNIYLIIDEAFMDFLEENETISMINYLENFKNLIIIRAFTKFFAIPGLRLGYGLTSNKNLAEKLLQMR---------E 241 (354)
T ss_pred HhcCCEEEEeCcccccCCCccchhHHHhccCCCCEEEEEechhhccCcchhheeeecCCHHHHHHHHHhC---------C
Confidence 999999999999752211 1 11 112223477889999999888 8999985 45555554332 1
Q ss_pred ccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcccChhHHHHHh--
Q psy15216 233 SGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI-- 310 (2602)
Q Consensus 233 ~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L-- 310 (2602)
.++.+.....++..+++. ..++++.++.+++.++++.+.|++ .+++.+..+.. . ++++...+..++.+.|
T Consensus 242 ~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~r~~l~~~L~~-~~~~~~~~~~g----~--f~~~~~~~~~~~~~~l~~ 313 (354)
T PRK06358 242 PWSINTFADLAGQTLLDD-KEYIKKTIQWIKEEKDFLYNGLSE-FKGIKVYKPSV----N--FIFFKLEKPIDLRKELLK 313 (354)
T ss_pred CCcchHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHhc-CCCcEEcCCcc----e--EEEEEcCchHHHHHHHHH
Confidence 234555555556566642 234577778888889999999977 57776664321 2 2333333446666666
Q ss_pred CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 311 KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 311 ~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
+||.++++..+.+. ..+++||+++ +.+++++++++|++.
T Consensus 314 ~gI~v~~~~~f~~~-----------------~~~~iRls~~---~~~~~~~l~~~l~~~ 352 (354)
T PRK06358 314 KGILIRSCSNYRGL-----------------DENYYRVAVK---SREDNKKLLKALEVI 352 (354)
T ss_pred CCeEEEECCCCCCC-----------------CCCEEEEEeC---CHHHHHHHHHHHHHH
Confidence 89999999877321 1378999998 899999999999853
|
|
| >PRK04870 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.8e-21 Score=246.07 Aligned_cols=315 Identities=12% Similarity=0.082 Sum_probs=231.4
Q ss_pred eeeeccC--CCCCCCHHHHHHHHHHHhh--ccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCC-CcEEEeCCHHHHHH
Q psy15216 1394 TNIVFKD--ATTPIDPRVVDKMIPYLRV--QFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADP-REIIWTSGATESNN 1468 (2602)
Q Consensus 1394 ~~v~L~~--~~~~~~~~v~eal~~~l~~--~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~-~~iv~t~gaT~al~ 1468 (2602)
..+.++. +..++++.+++++.+.+.. ...+|.. ...++|+.++++++.++ ++|++|+|+++++.
T Consensus 27 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~-----------~~~~lr~~ia~~~~~~~~~~I~~t~G~~~~i~ 95 (356)
T PRK04870 27 GMVKLDAMENPYRLPAELRAELGERLAEVALNRYPDP-----------RAAALKAALRAAMGVPAGADVLLGNGSDELIQ 95 (356)
T ss_pred CceeCcCCCCCCCCCHHHHHHHHHHhhccccccCCCC-----------CHHHHHHHHHHHhCcCCCCcEEEcCCHHHHHH
Confidence 4455642 3457889999999988753 2233332 14679999999999865 48999999999999
Q ss_pred HHHHhhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhcc-CCceEEEEecccccccc
Q psy15216 1469 LAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKIC-SDTILVSVMLVNNEIGV 1547 (2602)
Q Consensus 1469 ~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~-~~t~lv~l~~~~n~tG~ 1547 (2602)
.++.++. ++||+|++++|+|+.+...++.. |++++.++.++++.+|++++++++. .++++|++++|+||||.
T Consensus 96 ~~~~~~~----~~gd~vlv~~P~y~~~~~~~~~~---g~~~~~i~~~~~~~~d~~~l~~~~~~~~~~~v~l~~p~NPtG~ 168 (356)
T PRK04870 96 LLALACA----KPGATVLAPEPGFVMYRMSAKLA---GLEFVGVPLTADFTLDLPAMLAAIAEHRPALVFLAYPNNPTGN 168 (356)
T ss_pred HHHHHhc----CCCCEEEECCCCHHHHHHHHHHc---CCEEEEecCCCCCCCCHHHHHHHhhcCCCCEEEEcCCCCCCCC
Confidence 9998886 89999999999998876655554 9999999998888899999999996 58999999999999999
Q ss_pred ccChHHHHHHhhhcCCEEEEecccccCcc-c--ccCCCCCccEEEEccccccCCCc--eEEEEEecCCCCccccccccCC
Q psy15216 1548 IQPILEIGELCRSKGVIFHCDAAQAVGKI-D--INIQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGG 1622 (2602)
Q Consensus 1548 ~~~l~~I~~ia~~~gi~vivD~a~~~g~~-~--~~l~~~~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~~g~~ 1622 (2602)
++|.+++.++++..++++|+|+++..-.. . ..+...+..+++.|++| +|++| +||+++++++++.+.....
T Consensus 169 ~~~~~~~~~i~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~vi~~~S~SK-~~~~GlRiG~~i~~~~~i~~~~~~~~--- 244 (356)
T PRK04870 169 LFDDADVERIIEAAPGLVVVDEAYQPFAGDSWLPRLARFPNLLVMRTVSK-LGLAGLRLGYLAGHPAWIAELDKVRP--- 244 (356)
T ss_pred CCCHHHHHHHHHHCCCEEEEECCchhhcCcchHHHHhhCCCEEEEecchh-hhhHHHhhhhhhCCHHHHHHHHHccC---
Confidence 99988888888776889999999752110 1 11222234578889999 78888 9999998877666654321
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecCCcHHH
Q psy15216 1623 HEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESL 1702 (2602)
Q Consensus 1623 ~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~ 1702 (2602)
..+.+.....+...+++.. ..+++.+++++++++++.+.|.. .+++.+. ++. ..++++...+...+
T Consensus 245 ------~~~~~~~~q~~a~~~l~~~-~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~-~~~-----~~~~~~~~~~~~~~ 310 (356)
T PRK04870 245 ------PYNVNVLTQATALFALEHV-DVLDAQAAQLRAERTRLAAALAA-LPGVTVF-PSA-----ANFILVRVPDAAAV 310 (356)
T ss_pred ------CCcCCHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHHHh-CCCcEEC-CCC-----CeEEEEECCCHHHH
Confidence 1233444444444555422 33677778888999999999987 6777654 221 22344443345566
Q ss_pred HHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1703 LMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1703 ~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
...| +||.++++..|... ..+++||+++ +.+++++++++|++
T Consensus 311 ~~~l~~~gI~v~~~~~f~~~-----------------~~~~iRis~~---~~~~~~~l~~al~~ 354 (356)
T PRK04870 311 FDGLKTRGVLVKNLSGMHPL-----------------LANCLRVTVG---TPEENAQFLAALKA 354 (356)
T ss_pred HHHHHHCCEEEEECCCCCCC-----------------CCCeEEEeCC---CHHHHHHHHHHHHH
Confidence 6555 79999988766321 1279999998 78999999999986
|
|
| >PRK14809 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.9e-21 Score=244.73 Aligned_cols=299 Identities=12% Similarity=0.070 Sum_probs=215.4
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCC
Q psy15216 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK 87 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd 87 (2602)
++|+.+.+++.+.+.....+|.. ...++|+.+++++++++++|++|+|+++++++++.++. ++||
T Consensus 43 ~~~~~~~~~~~~~~~~~~~Y~~~-----------~~~~lr~~ia~~~~~~~~~I~it~G~~~al~~~~~~~~----~~gd 107 (357)
T PRK14809 43 GPSPAAVEAIREAAERVHSYPKA-----------SHADLTAALADRWDVSPEQVWLANGGDGALDYLARAML----DPGD 107 (357)
T ss_pred CCCHHHHHHHHHHHhhhhcCCCC-----------CHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHhc----CCCC
Confidence 57778889988877654444432 24578999999999999999999999999999999987 8999
Q ss_pred EEEEcCCCCcccHHHHHHHHhCCcEEEEeccCC--CCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHhc
Q psy15216 88 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSK 165 (2602)
Q Consensus 88 ~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~~ 165 (2602)
.|++++|.|+.+...... .|+.++.++++. ++.++++++++.+ ++++++++++||||||.++|.+++.++++..
T Consensus 108 ~V~v~~P~y~~~~~~~~~---~g~~~~~~~l~~~~~~~~~~~~~~~~~-~~~k~i~l~~p~NPTG~~~s~~~~~~l~~~~ 183 (357)
T PRK14809 108 TVLVPDPGFAYYGMSARY---HHGEVREYPVSKADDFEQTADTVLDAY-DGERIVYLTSPHNPTGSEIPLDEVEALAERT 183 (357)
T ss_pred EEEEeCCChHHHHHHHHH---cCCeEEEEecccCcCCCcCHHHHHHhh-cCCcEEEEeCCCCCCCcCCCHHHHHHHHHhC
Confidence 999999999876654443 488888888753 4567888887776 4689999999999999999988888877653
Q ss_pred --CCEEEEecccccccc---ccc-CCCCCccEEEeccccccCCCC--cEEEEEecCCCCcccceecCCCccccccccCcc
Q psy15216 166 --GVIFHCDAAQAVGKI---DIN-IQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLA 237 (2602)
Q Consensus 166 --g~~livD~a~a~g~~---~~d-l~~~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~ 237 (2602)
++++|+|++|..-.. .+. +...+.-+++.||+|.+|++| +||+++++++++.+.... ..+..+
T Consensus 184 ~~~~~iI~De~y~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~~~~~~~~~~~~~~~~---------~~~~~~ 254 (357)
T PRK14809 184 DEETLVVVDEAYGEFAERPSAVALVEERDDVAVLRTFSKAYGLAGLRLGYAVVPEEWADAYARVN---------TPFAAS 254 (357)
T ss_pred ccCcEEEEechhhhccCCchhHHHHhhCCCEEEEecchhHhcCcchhheeeecCHHHHHHHHHhC---------CCCCCC
Confidence 789999999863211 111 111223477889999999888 899999988777665432 122344
Q ss_pred hhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcccChhHHHHHh--CCeEE
Q psy15216 238 THQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDIAV 315 (2602)
Q Consensus 238 ~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~v 315 (2602)
.....++..+|.. ..++++.++.+++.++++.+.|.. . .. ++ ...++++...+..++...+ +||.+
T Consensus 255 ~~~~~~a~~~l~~-~~~~~~~~~~~~~~r~~l~~~L~~-~----~~-~~-----~g~f~~~~~~~~~~~~~~l~~~gv~v 322 (357)
T PRK14809 255 ELACRAGLAALDD-DEHVERTVETARWAREYIREELDA-P----TW-ES-----AGNFVLAEVGDASAVAEAAQERGVIV 322 (357)
T ss_pred HHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHhcC-c----cC-CC-----CCCEEEEECCCHHHHHHHHHHCCEEE
Confidence 4444444455542 345667777777777888887754 1 11 11 1222333333556676666 79999
Q ss_pred cccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 316 SSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 316 ~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
++|..|.. .+++||+++ +.++++.++++|++
T Consensus 323 ~~g~~f~~-------------------~~~iRls~~---~~~~~~~~l~~L~~ 353 (357)
T PRK14809 323 RDCTSFGL-------------------PECIRITCG---TREETERAVEVLNE 353 (357)
T ss_pred EECccCCC-------------------CCeEEEecC---CHHHHHHHHHHHHH
Confidence 99876632 278999987 57999999999985
|
|
| >PRK08056 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.7e-21 Score=244.35 Aligned_cols=306 Identities=15% Similarity=0.128 Sum_probs=217.3
Q ss_pred CCCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhcc
Q psy15216 1401 ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKK 1480 (2602)
Q Consensus 1401 ~~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~ 1480 (2602)
+..++|+.+++++.+.+.....+|.. ...++|+.+++++++++++|++|+|+++++..++.++ .
T Consensus 30 ~~~~~p~~~~~a~~~~~~~~~~y~~~-----------~~~~lr~~ia~~~~~~~~~i~it~Ga~~~l~~~~~~l-----~ 93 (356)
T PRK08056 30 NPLGMPVSLKRAIIDNLDCAERYPDV-----------EYRHLHQALARHHQVPASWILAGNGETESIFAVVSGL-----K 93 (356)
T ss_pred CCCCCCHHHHHHHHHHHHhcccCcCc-----------cHHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHHHh-----C
Confidence 34577888999998877643333332 2578999999999999999999999999999998875 3
Q ss_pred CCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCC--CCcChhHHHhhccCCceEEEEeccccccccccC---hHHHH
Q psy15216 1481 RGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN--GLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIG 1555 (2602)
Q Consensus 1481 ~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~--~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~---l~~I~ 1555 (2602)
+|+ +++++|.|+.+...++.. |++++.++.+++ +.+| +++.+.+++++++|++++|+||||.+++ +++|+
T Consensus 94 ~g~-viv~~P~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~~-~~~~~~~~~~~k~v~l~~p~NPTG~~~~~~~~~~i~ 168 (356)
T PRK08056 94 PRR-AMIVTPGFAEYRRALQQV---GCEIRRYSLREADGWQLT-DAILEALTPDLDCLFLCTPNNPTGLLPERQLLQAIA 168 (356)
T ss_pred CCC-EEEeCCCcHHHHHHHHHc---CCeEEEEecccccCCCcc-HHHHHhccCCCCEEEEeCCcCCCCCCCCHHHHHHHH
Confidence 676 677778887766555444 999999998643 3445 4666778889999999999999999999 78899
Q ss_pred HHhhhcCCEEEEecccccCc----ccc-cCCCCCccEEEEccccccCCCc--eEEEEEec-CCCCccccccccCCccccC
Q psy15216 1556 ELCRSKGVIFHCDAAQAVGK----IDI-NIQNYKVDLMSFSAHKIYGPKG--IGALYIRR-NPRTRIEAQIHGGGHEYGL 1627 (2602)
Q Consensus 1556 ~ia~~~gi~vivD~a~~~g~----~~~-~l~~~~~D~~v~S~~K~~gp~G--~G~l~~~~-~~~~~l~~~~~g~~~~~~~ 1627 (2602)
++|++|++++|+|+++..-. ..+ .+...+..+++.|+||.+|++| +||+++++ +.++.+....
T Consensus 169 ~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~~~~~~l~~~~--------- 239 (356)
T PRK08056 169 ERCKSLNIALILDEAFIDFIPDETGFIPQLADNPHLWVLRSLTKFYAIPGLRLGYLVNSDDAAVARMRRQQ--------- 239 (356)
T ss_pred HHHHhcCCEEEEecchhccCCcchHHHHHhccCCCEEEEEechhhccCcchhheeeecCCHHHHHHHHHhC---------
Confidence 99999999999999964211 111 1233446688899999999888 89999853 4444443211
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEec-CCcHHHHHhc
Q psy15216 1628 RSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGESLLMAI 1706 (2602)
Q Consensus 1628 ~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~L 1706 (2602)
...+.+.....++..++. ........++++++.++++.+.|.+ ++++.+..+ . ..++++.. .+..++...|
T Consensus 240 ~~~~~~~~~~~~a~~~l~-~~~~~~~~~~~~~~~r~~l~~~L~~-~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~l 311 (356)
T PRK08056 240 MPWSINAFAALAGEVILQ-DRAYQQATWQWLAEEGARFYQALCA-LPLLTVWPG-R-----ANYLFLRCERPDIDLQRAL 311 (356)
T ss_pred CCCchhHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHHHhc-CCCcEEcCC-C-----CcEEEEEcCCChHHHHHHH
Confidence 122344444444444443 1233556677888889999999976 667765422 1 12233332 2345666665
Q ss_pred --CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1707 --KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1707 --~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
+||.+++|..|... ..++|||+++ +.++.++++++|++
T Consensus 312 ~~~gI~v~~~~~f~~~-----------------~~~~iRis~~---~~~~~~~l~~~l~~ 351 (356)
T PRK08056 312 LTQRILIRSCANYPGL-----------------DSRYYRVAIR---SAAENERLLAALRN 351 (356)
T ss_pred HHCCeEEEECCCCCCC-----------------CCCEEEEEEc---CHHHHHHHHHHHHH
Confidence 89999998876321 1279999998 78999999999986
|
|
| >PRK08912 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.7e-21 Score=247.68 Aligned_cols=315 Identities=17% Similarity=0.156 Sum_probs=221.7
Q ss_pred CCCHHHHHHHHHHHhhh-cCCCCCCCcchhhhHHHHHHHHHHHHHHHh----C--CCCC-cEEEeCCHHHHHHHHHHhcc
Q psy15216 8 PIDPRVVDKMIPYLRVQ-FGNPASRNHIYGWTAEKAIEKARNEVAQLI----Y--ADPR-EIIWTSGATESNNLAIKGAA 79 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~-~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~----g--~~~~-~Iv~t~g~T~al~~~~~~l~ 79 (2602)
+.|+.+.+++.+.+... ..|+.. . ...++|+++++++ | ++++ +|++|+|+++|+.+++.++.
T Consensus 39 ~~p~~~~~~~~~~~~~~~~~Y~~~------~----G~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~~~ 108 (387)
T PRK08912 39 PGPEDVRRAAADALLDGSNQYPPM------M----GLPELRQAVAAHYARFQGLDLDPETEVMVTSGATEALAAALLALV 108 (387)
T ss_pred CCCHHHHHHHHHHHhcCCCCCCCC------C----CcHHHHHHHHHHHHHHhCCCCCCcccEEEeCCcHHHHHHHHHHhc
Confidence 45677788777765431 122221 1 2344555555554 5 4677 89999999999999999887
Q ss_pred cccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCC-CCccChHHHHhhccCCceEEEEecccCccccccc---H
Q psy15216 80 HFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---I 155 (2602)
Q Consensus 80 ~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~-~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~---l 155 (2602)
++||+|+++.|.|+.+...+... |++++.+++++ ++.+|++++++.+.++++++++++|+||||.++| +
T Consensus 109 ----~~gd~Vlv~~p~y~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~s~~~~ 181 (387)
T PRK08912 109 ----EPGDEVVLFQPLYDAYLPLIRRA---GGVPRLVRLEPPHWRLPRAALAAAFSPRTKAVLLNNPLNPAGKVFPREEL 181 (387)
T ss_pred ----CCCCEEEEeCCCchhhHHHHHHc---CCEEEEEecCcccCcCCHHHHHHHhCccceEEEEeCCCCCcCcccCHHHH
Confidence 79999999999999887766554 99999999864 5789999999999999999999999999999998 5
Q ss_pred HHHHHHHHhcCCEEEEeccccccc------ccc-cCCC-CCccEEEeccccccCCCC--cEEEEEecCCCCcccceecCC
Q psy15216 156 LEIGELCRSKGVIFHCDAAQAVGK------IDI-NIQN-YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGG 225 (2602)
Q Consensus 156 ~~I~~la~~~g~~livD~a~a~g~------~~~-dl~~-~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g~ 225 (2602)
++|.++|++|++++|+|++|+... .++ .+.. .+.++++.|+||.+|++| +||+++++++++.+.....
T Consensus 182 ~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~~~~l~~~~~-- 259 (387)
T PRK08912 182 ALLAEFCQRHDAVAICDEVWEHVVFDGRRHIPLMTLPGMRERTVKIGSAGKIFSLTGWKVGFVCAAPPLLRVLAKAHQ-- 259 (387)
T ss_pred HHHHHHHHHCCeEEEEhhhhhhcccCCCCCcChhhCCCccCceEEEeechhhccCcCceeEEEecCHHHHHHHHHHHh--
Confidence 568889999999999999985311 111 1111 235689999999999888 8999999877766643321
Q ss_pred CccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc----c
Q psy15216 226 GHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF----I 301 (2602)
Q Consensus 226 ~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~----~ 301 (2602)
....+.+.....++..++.....+.++.++++.++++.+.+.|.. .|+.+..+.. ..+.++.++. .
T Consensus 260 -----~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~--~g~~~~~~~g---~~~l~~~l~~~~~~~ 329 (387)
T PRK08912 260 -----FLTFTTPPNLQAAVAYGLGKPDDYFEGMRADLARSRDRLAAGLRR--IGFPVLPSQG---TYFLTVDLAPLGLAE 329 (387)
T ss_pred -----hccccCChHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHh--CCCcccCCCc---ceEEEecccccCCCC
Confidence 111223333344444555422345677888889999999999987 3666554322 1223334432 2
Q ss_pred ChhHHHHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 302 EGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 302 ~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
+..++...+ +||.+.+|..|... ....+++|++++. .++.++..+++|++
T Consensus 330 ~~~~~~~~l~~~~gV~v~pg~~f~~~---------------~~~~~~iRl~~~~--~~~~l~~~l~rl~~ 382 (387)
T PRK08912 330 DDVAFCRRLVEEAGVAAIPVSAFYEE---------------DPVTSVVRFCFAK--RDATLDEAVERLAA 382 (387)
T ss_pred CHHHHHHHHHhcCCEEEecchhhCCC---------------CCCCCEEEEEEeC--CHHHHHHHHHHHHH
Confidence 455666664 59999998766431 0123799999985 57888888888875
|
|
| >PTZ00433 tyrosine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.5e-21 Score=248.09 Aligned_cols=311 Identities=13% Similarity=0.110 Sum_probs=219.8
Q ss_pred CCCHHHHHHHHHHHhh--hcCCCCCCCcchhhhHHHHHHHHHHHHHHHhC------------CCCCcEEEeCCHHHHHHH
Q psy15216 8 PIDPRVVDKMIPYLRV--QFGNPASRNHIYGWTAEKAIEKARNEVAQLIY------------ADPREIIWTSGATESNNL 73 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~--~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g------------~~~~~Iv~t~g~T~al~~ 73 (2602)
.+|+.+.+++.+.+.. ...|+.. ....++|+++|++++ +++++|++|+|+++|+.+
T Consensus 50 ~p~~~~~~a~~~~~~~~~~~~Y~~~----------~G~~~Lr~aia~~~~~~~~~~~~~~~~~~~~~i~it~G~~~al~~ 119 (412)
T PTZ00433 50 LTPAIQTKALVEAVDSQECNGYPPT----------VGSPEAREAVATYWRNSFVHKESLKSTIKKDNVVLCSGVSHAILM 119 (412)
T ss_pred CCCHHHHHHHHHHhhcCCCCCCCCC----------CCcHHHHHHHHHHHHhhccccccccCCCChhhEEEeCChHHHHHH
Confidence 3678888888887753 1223221 124567888888775 567899999999999999
Q ss_pred HHHhcccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCC--CCccChHHHHhhccCCceEEEEecccCcccc
Q psy15216 74 AIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGV 151 (2602)
Q Consensus 74 ~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~ld~e~l~~~i~~~tklv~i~~~~npTG~ 151 (2602)
++.++. ++||+|+++.|+|+.+...++.. |++++.++.++ ++.+|+++++++++++++++++++||||||.
T Consensus 120 ~~~~~~----~~gd~vlv~~P~y~~~~~~~~~~---g~~~~~i~~~~~~~~~~d~~~l~~~~~~~~~~i~~~~p~NPtG~ 192 (412)
T PTZ00433 120 ALTALC----DEGDNILVPAPGFPHYETVCKAY---GIEMRFYNCRPEKDWEADLDEIRRLVDDRTKALIMTNPSNPCGS 192 (412)
T ss_pred HHHHhc----CCCCEEEEccCCcccHHHHHHHc---CCEEEEEecCccccCcCCHHHHHHHhccCceEEEEeCCCCCCCc
Confidence 999987 89999999999999987776655 99999998854 4679999999999989999999999999999
Q ss_pred ccc---HHHHHHHHHhcCCEEEEeccccccc---cc-c---cCCCCCccEEEeccccccCCCC--cEEEEEe-c-----C
Q psy15216 152 IQP---ILEIGELCRSKGVIFHCDAAQAVGK---ID-I---NIQNYKVDLMSFSAHKIYGPKG--IGALYIR-R-----N 213 (2602)
Q Consensus 152 ~~~---l~~I~~la~~~g~~livD~a~a~g~---~~-~---dl~~~~~D~~~~S~~K~~Gp~G--~G~l~~~-~-----~ 213 (2602)
+++ +++|+++|++||+++|+|+++..-. .+ . .+.....-+++.|++|.+|.+| +||+++. + +
T Consensus 193 ~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pGlRlG~~i~~~p~~~~~~ 272 (412)
T PTZ00433 193 NFSRKHVEDIIRLCEELRLPLISDEIYAGMVFNGATFTSVADFDTTVPRVILGGTAKNLVVPGWRLGWLLLVDPHGNGGD 272 (412)
T ss_pred ccCHHHHHHHHHHHHHcCCeEEEeccccccccCCCCccchhhccCCCceEEEccchhhcCCCCeeEEEEEEeCCcccHHH
Confidence 998 5567888999999999999986321 11 1 1211122477889999998888 8999973 2 1
Q ss_pred CCCcccceecCCCccccccccCcchhHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCc
Q psy15216 214 PRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRL-ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPH 292 (2602)
Q Consensus 214 ~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~-~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~ 292 (2602)
+++.+.... ......+.....++..++.. ...++++.++++++.++.+.+.|.+ ..++.+..+.. ..
T Consensus 273 ~~~~~~~~~--------~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~-~~~~~~~~p~g---g~ 340 (412)
T PTZ00433 273 FLDGMKRLG--------MLVCGPCSVVQAALGEALLNTPQEHLEQIVAKLEEGAMVLYNHIGE-CIGLSPTMPRG---SM 340 (412)
T ss_pred HHHHHHHHh--------hccCCCChHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhc-CCCCcccCCCe---eE
Confidence 222222111 01123444445445455542 2356778888888999999999976 44555433321 12
Q ss_pred eEEEEEcc------cChhHHHHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHH
Q psy15216 293 NLNISFNF------IEGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTI 363 (2602)
Q Consensus 293 ~~~~~~~~------~~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li 363 (2602)
.+++.++. .+..++...| +||.+.+|..|.. .+++||+++. .+++++..+
T Consensus 341 f~~~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~-------------------~~~iRis~~~--~~e~l~~al 399 (412)
T PTZ00433 341 FLMSRLDLEKFRDIKSDVEFYEKLLEEENVQVLPGEIFHM-------------------PGFTRLTISR--PVEVLREAV 399 (412)
T ss_pred EEEEEechhhcCCCCCHHHHHHHHHHhcCEEEeCccccCC-------------------CCeEEEEecC--CHHHHHHHH
Confidence 23333432 1345666665 5999998876643 2799999984 578899999
Q ss_pred HHHHh
Q psy15216 364 KLLKM 368 (2602)
Q Consensus 364 ~~L~~ 368 (2602)
++|.+
T Consensus 400 ~~l~~ 404 (412)
T PTZ00433 400 ERIKA 404 (412)
T ss_pred HHHHH
Confidence 88885
|
|
| >TIGR03540 DapC_direct LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.7e-20 Score=244.25 Aligned_cols=314 Identities=15% Similarity=0.131 Sum_probs=223.0
Q ss_pred CCCCHHHHHHHHHHHhhc--cCCCCCccchhHHHHHHHHHHHHHHHHHHh----CC--CCC-cEEEeCCHHHHHHHHHHh
Q psy15216 1403 TPIDPRVVDKMIPYLRVQ--FGNPASRNHIYGWTAEKAIEKARNEVAQLI----YA--DPR-EIIWTSGATESNNLAIKG 1473 (2602)
Q Consensus 1403 ~~~~~~v~eal~~~l~~~--~~np~~~~~~~~~~~~~~~~~lr~~ia~~~----g~--~~~-~iv~t~gaT~al~~al~~ 1473 (2602)
.+.++.+.+++.+.+... ..+++. ....++|+++++++ |. +++ +|++|+|+++++..++++
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~Y~~~----------~G~~~lr~~ia~~~~~~~~~~~~~~~~vi~t~G~~~~l~~~~~~ 110 (383)
T TIGR03540 41 LPTPKHIVEALCKAAENPENHRYPSY----------EGMLAYRQAVADWYKRRFGVELDPETEVLSLIGSKEGIAHIPLA 110 (383)
T ss_pred CCCCHHHHHHHHHHHhCCCCCCCCCC----------CCCHHHHHHHHHHHHHhhCCCCCCCCeEEECCCcHHHHHHHHHH
Confidence 355778888888876531 122221 11355677777765 43 455 589999999999999998
Q ss_pred hhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCC--CCCcChhHHHhhccCCceEEEEeccccccccccC-
Q psy15216 1474 AAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP- 1550 (2602)
Q Consensus 1474 l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~- 1550 (2602)
+. ++||+|++++|+|+.+...++.+ |++++.++.+. ++.+|++++++++.+++++|++++|+||||.++|
T Consensus 111 ~~----~~gd~vlv~~P~y~~~~~~~~~~---G~~v~~v~~~~~~g~~~d~~~l~~~~~~~~~~v~i~~P~NPtG~~~~~ 183 (383)
T TIGR03540 111 FV----NPGDIVLVPDPGYPVYRIGTLFA---GGEPYEMPLKEENGFLPDFDAIPEDIAKKAKLMFINYPNNPTGAVAPL 183 (383)
T ss_pred hC----CCCCEEEEeCCCCcchHHHHHhc---CCEEEEEecCcccCCccCHHHHHhhccccceEEEEeCCCCCcCccCCH
Confidence 87 89999999999999988776665 99999999864 3457999999999999999999999999999999
Q ss_pred --hHHHHHHhhhcCCEEEEeccccc----CcccccCCC----CCccEEEEccccccCCCc--eEEEEEecCCCCcccccc
Q psy15216 1551 --ILEIGELCRSKGVIFHCDAAQAV----GKIDINIQN----YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQI 1618 (2602)
Q Consensus 1551 --l~~I~~ia~~~gi~vivD~a~~~----g~~~~~l~~----~~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~ 1618 (2602)
+++|+++|++||+++|+|++|+. +..+.++.. ....+++.||+|.+|++| +||++.++++++.+....
T Consensus 184 ~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~i~~~~l~~~~~~~~ 263 (383)
T TIGR03540 184 KFFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDGAKDVGIEFHSLSKTYNMTGWRIGMAVGNADLIAGLGKVK 263 (383)
T ss_pred HHHHHHHHHHHHcCEEEEEecchhhhccCCCCCcCcccCCCcccCEEEEEecccccCCccceeeEEeCCHHHHHHHHHHH
Confidence 68889999999999999999862 211222211 123477889999999888 999999887766654332
Q ss_pred ccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEe-cC
Q psy15216 1619 HGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN-FI 1697 (2602)
Q Consensus 1619 ~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~-~~ 1697 (2602)
. .. ..+.+.+.+.++..++......+++.++++.++++.+.+.|.+ . ++.+..+... ....+.++ ..
T Consensus 264 ~------~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~-~-~~~~~~~~~~---~~~~~~l~~~~ 331 (383)
T TIGR03540 264 T------NV-DSGVFQAIQYAAIAALNGPQDVVKEIRKIYQRRRDLLLEALKK-I-GIDVEKPKAT---FYVWVPVPEGY 331 (383)
T ss_pred H------hc-ccCCChHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHh-C-CCEecCCCcc---eEEEEECCCCC
Confidence 1 11 1223334445555666533455677788888999999999987 3 6666533221 11222223 23
Q ss_pred CcHHHHHhc---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1698 EGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1698 ~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
+..++...| +||.+++|..|... ..+++||+++ .+.++++.+++.|++
T Consensus 332 ~~~~~~~~ll~~~gi~v~~g~~f~~~-----------------~~~~~Ris~~--~~~~~l~~~l~~l~~ 382 (383)
T TIGR03540 332 TSAEFAARLLEETGVVVTPGVGFGEY-----------------GEGYIRISLT--VPDERLEEAVARIKK 382 (383)
T ss_pred CHHHHHHHHHHHCCEEEecchhhCcc-----------------CCCeEEEEec--CCHHHHHHHHHHHhh
Confidence 456666654 69999999877431 1278999997 367888888877763
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation. |
| >PRK05937 8-amino-7-oxononanoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.3e-21 Score=246.01 Aligned_cols=314 Identities=18% Similarity=0.196 Sum_probs=217.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhhcCCCCCCCcchhhh----HHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHH
Q psy15216 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWT----AEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIK 76 (2602)
Q Consensus 1 Ld~a~~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~----~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~ 76 (2602)
||++.+++..+.+.+++.++.... |+.+.+..+.. ..+.++++|+.+|+++|++ +.+++++|+ .++..++.
T Consensus 15 L~~~~~~~~~~~~~~~~~~~~~~~---p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~~~~-~~l~~~sG~-~a~~~~~~ 89 (370)
T PRK05937 15 LGFSRSDTLVHEVEKRYRLYCRQF---PHAQLGYGGSRAILGPSSLLDDLEHKIAHFHGAP-EAFIVPSGY-MANLGLCA 89 (370)
T ss_pred cCCCCCHHHHHHHHHHHHHhcccc---CCCCCCCCCcCcccCChHHHHHHHHHHHHHhCCC-eEEEECChH-HHHHHHHH
Confidence 456666555555666665554321 33323333433 6778999999999999985 346666666 55555555
Q ss_pred hcccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhcc------CCceEEEEecccCccc
Q psy15216 77 GAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKIC------SDTILVSVMLVNNEIG 150 (2602)
Q Consensus 77 ~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~------~~tklv~i~~~~npTG 150 (2602)
.+. ++||.|++...+|+++...+..+. +..+. ++ ..|+++|+++++ +++.+|++++++|++|
T Consensus 90 ~~~----~~~d~ii~d~~~H~sv~~~~~~~~--~~~~~-~~-----~~d~~~l~~~l~~~~~~~~~~~~v~v~~v~s~~G 157 (370)
T PRK05937 90 HLS----SVTDYVLWDEQVHISVVYSLSVIS--GWHQS-FR-----HNDLDHLESLLESCRQRSFGRIFIFVCSVYSFKG 157 (370)
T ss_pred HhC----CCCCEEEEEhhhhHHHHHHHHHcC--CceEE-ec-----CCCHHHHHHHHHhhhccCCCcEEEEEecCCCCCC
Confidence 544 688999999999999988887652 33333 32 468999999886 3466888999999999
Q ss_pred ccccHHHHHHHHHhcCCEEEEecccccccccccCC----CCC---ccEEEeccccccCCCCcEEEEEecCCCCcccceec
Q psy15216 151 VIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQ----NYK---VDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIH 223 (2602)
Q Consensus 151 ~~~~l~~I~~la~~~g~~livD~a~a~g~~~~dl~----~~~---~D~~~~S~~K~~Gp~G~G~l~~~~~~~~~l~~~~~ 223 (2602)
.+.|+++|.++|+++|+++++|++|+.|..+.+.. .++ .++++.|++|++|+.|.|+++.++ ....+.+..
T Consensus 158 ~i~pl~eI~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~~~~~tlsK~~g~~G~~vl~~~~-~~~~~~~~~- 235 (370)
T PRK05937 158 TLAPLEQIIALSKKYHAHLIVDEAHAMGIFGDDGKGFCHSLGYENFYAVLVTYSKALGSMGAALLSSSE-VKQDLMLNS- 235 (370)
T ss_pred CccCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCcEEEEechhhhhcCceEEEcCHH-HHHHHHHhC-
Confidence 99999999999999999999999999988776652 222 236678999999999988776543 322222110
Q ss_pred CCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcccCh
Q psy15216 224 GGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEG 303 (2602)
Q Consensus 224 g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~ 303 (2602)
.+..+ .++.+.+.++++.+++++.....+..+++..++++++.+.|....++ ....+.++..+.
T Consensus 236 ---~~~~~-s~~~~~~~~~a~~aal~~l~~~~~~~~~~l~~l~~~l~~~l~~~~~~------------~~~~i~~~~~~~ 299 (370)
T PRK05937 236 ---PPLRY-STGLPPHLLISIQVAYDFLSQEGELARKQLFRLKEYFAQKFSSAAPG------------CVQPIFLPGISE 299 (370)
T ss_pred ---CCCee-cCCCCHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCCCCC------------CEEEEEeCChhH
Confidence 01122 23456667888888998765444667788888888888877431111 112245555555
Q ss_pred hHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 304 ESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 304 ~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
..+...| +||.++. .|.+. .++||+|+++++|++||++++++|++.
T Consensus 300 ~~~~~~L~~~gi~v~~--~~~~~------------------~~~iRis~~~~~t~edid~l~~~L~~~ 347 (370)
T PRK05937 300 QELYSKLVETGIRVGV--VCFPT------------------GPFLRVNLHAFNTEDEVDILVSVLATY 347 (370)
T ss_pred HHHHHHHHHCCeeEEe--eCCCC------------------CCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 6666666 7888763 33221 268999999999999999999999863
|
|
| >PRK05942 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-20 Score=246.05 Aligned_cols=311 Identities=14% Similarity=0.141 Sum_probs=217.4
Q ss_pred CCCHHHHHHHHHHHhhc--cCCCCCccchhHHHHHHHHHHHHHHHHHHh----C--CCCCc-EEEeCCHHHHHHHHHHhh
Q psy15216 1404 PIDPRVVDKMIPYLRVQ--FGNPASRNHIYGWTAEKAIEKARNEVAQLI----Y--ADPRE-IIWTSGATESNNLAIKGA 1474 (2602)
Q Consensus 1404 ~~~~~v~eal~~~l~~~--~~np~~~~~~~~~~~~~~~~~lr~~ia~~~----g--~~~~~-iv~t~gaT~al~~al~~l 1474 (2602)
+.+..+.+++.+.+... ..++.. ....++|+++++++ | +++++ |++|+|+++|+..++.++
T Consensus 48 ~~p~~~~~~~~~~~~~~~~~~Y~~~----------~G~~~lr~aia~~~~~~~~~~~~~~~~i~vt~G~~~al~~~~~~~ 117 (394)
T PRK05942 48 AAPQPVIEAAIAALADPQNHGYPPF----------EGTASFRQAITDWYHRRYGVELDPDSEALPLLGSKEGLTHLALAY 117 (394)
T ss_pred CCCHHHHHHHHHHHhCCCCccCCCC----------CCCHHHHHHHHHHHHHHHCCCcCCCCeEEEccChHHHHHHHHHHh
Confidence 34566777766665421 122221 12456777777776 5 46764 889999999999999888
Q ss_pred hhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCC--CCCcChhHHHhhccCCceEEEEeccccccccccC--
Q psy15216 1475 AHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP-- 1550 (2602)
Q Consensus 1475 ~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~-- 1550 (2602)
. ++||+|++++|+|+.+...+... |++++.++.+. ++.+|+++++++++++++++++++|+||||.+++
T Consensus 118 ~----~~gd~Vlv~~P~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P~NPtG~~~s~~ 190 (394)
T PRK05942 118 V----NPGDVVLVPSPAYPAHFRGPLIA---GAQIYPIILKPENDWLIDLSSIPEEVAQQAKILYFNYPSNPTTATAPRE 190 (394)
T ss_pred C----CCCCEEEEcCCCCcchHHHHHHc---CCEEEEeecCCccCCccCHHHHHHhccccceEEEEcCCCCCCCCcCCHH
Confidence 6 89999999999999987766554 99999998864 3569999999999999999999999999999999
Q ss_pred -hHHHHHHhhhcCCEEEEecccccCc----cccc---CCC-CCccEEEEccccccCCCc--eEEEEEecCCCCccccccc
Q psy15216 1551 -ILEIGELCRSKGVIFHCDAAQAVGK----IDIN---IQN-YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIH 1619 (2602)
Q Consensus 1551 -l~~I~~ia~~~gi~vivD~a~~~g~----~~~~---l~~-~~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~~ 1619 (2602)
+++|.++|++||+++|+|++++... .+.. +.. .+..+++.||+|.+|++| +||+++++++++.+.....
T Consensus 191 ~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~~GlRiG~i~~~~~l~~~l~~~~~ 270 (394)
T PRK05942 191 FFEEIVAFARKYEIMLVHDLCYAELAFDGYQPTSLLEIPGAKDIGVEFHTLSKTYNMAGWRVGFVVGNRHIIQGLRTLKT 270 (394)
T ss_pred HHHHHHHHHHHcCeEEEEeccchhhccCCCCCCChhhCCCccccEEEEecchhccCChhhheeeeecCHHHHHHHHHHHh
Confidence 7788899999999999999975321 1111 211 123477889999888888 8999998877776654321
Q ss_pred cCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEE--ec-
Q psy15216 1620 GGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISF--NF- 1696 (2602)
Q Consensus 1620 g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~--~~- 1696 (2602)
....+.+...+.++..+++......++.++++.++++++.+.|.+ .++.+..+. ...++++ +.
T Consensus 271 -------~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~--~~~~~~~~~-----~~~f~~~~~~~~ 336 (394)
T PRK05942 271 -------NLDYGIFSALQKAAETALQLPDSYLQQVQERYRTRRDFLIQGLGE--LGWNIPPTK-----ATMYLWVPCPVG 336 (394)
T ss_pred -------hcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH--CCCeecCCC-----eeeEEEEECCCC
Confidence 111233444555666777654556778888899999999999976 366554321 1223333 32
Q ss_pred CCcHHHHHh-c--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1697 IEGESLLMA-I--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1697 ~~~~~~~~~-L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
.+..++... + +||.+.+|..|... ..+++|++++ .+.+.+...++.|.+
T Consensus 337 ~~~~~~~~~~l~~~gV~v~~g~~f~~~-----------------~~~~iRis~~--~~~~~l~~~l~~l~~ 388 (394)
T PRK05942 337 MGSTDFALNVLQKTGVVVTPGNAFGEG-----------------GEGYVRISLI--ADCDRLGEALDRLKQ 388 (394)
T ss_pred CCHHHHHHHHHHHCCEEEeCChhhCcC-----------------CCCeEEEEec--CCHHHHHHHHHHHHH
Confidence 244555543 3 79999988776421 1279999997 344555555555543
|
|
| >cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I) | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.2e-21 Score=246.95 Aligned_cols=317 Identities=20% Similarity=0.201 Sum_probs=228.0
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCC
Q psy15216 1404 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK 1483 (2602)
Q Consensus 1404 ~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd 1483 (2602)
+.++.+++++.++++. ++++.. .+.+.........++++.++++++++ +.++++++++++..++.++. ++||
T Consensus 15 ~~~~~v~~a~~~~~~~-~~~~~~-~~~~~~~~~~~~~~l~~~la~~~~~~--~~iv~~sg~~a~~~~~~~~~----~~gd 86 (349)
T cd06454 15 ANHPEVIEAAKEALDK-YGVGAG-GSRLISGTSDLHEELEEELAEFHGKE--AALVFSSGYAANDGVLSTLA----GKGD 86 (349)
T ss_pred CCCHHHHHHHHHHHHH-hCCCCC-CcCeecCCchHHHHHHHHHHHHhCCC--CEEEeccHHHHHHHHHHHhc----CCCC
Confidence 4568999999999975 333322 22222234567789999999999975 35666777888888877776 7999
Q ss_pred EEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccC-----CceEEEEeccccccccccChHHHHHHh
Q psy15216 1484 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS-----DTILVSVMLVNNEIGVIQPILEIGELC 1558 (2602)
Q Consensus 1484 ~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~-----~t~lv~l~~~~n~tG~~~~l~~I~~ia 1558 (2602)
+|+++++.|+++...+.. .|++++.++. +|++++++++++ +++++++++++||||.+.|+++|.++|
T Consensus 87 ~Vl~~~~~~~~~~~~~~~---~g~~~~~~~~-----~~~~~le~~i~~~~~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~ 158 (349)
T cd06454 87 LIISDSLNHASIIDGIRL---SGAKKRIFKH-----NDMEDLEKLLREARRPYGKKLIVTEGVYSMDGDIAPLPELVDLA 158 (349)
T ss_pred EEEEehhhhHHHHHHHHH---cCCceEEecC-----CCHHHHHHHHHHhhccCCCeEEEEeccccCCCCccCHHHHHHHH
Confidence 999999999997665544 4888887752 577888888863 578999999999999999999999999
Q ss_pred hhcCCEEEEecccccCccc--------ccCCCCCccEEEEccccccCCCceEEEEEecCCCCccccccccCCccccCCCC
Q psy15216 1559 RSKGVIFHCDAAQAVGKID--------INIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSG 1630 (2602)
Q Consensus 1559 ~~~gi~vivD~a~~~g~~~--------~~l~~~~~D~~v~S~~K~~gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~g 1630 (2602)
++||+++|+|++|+.|... ++....+.|++++|+||.+|++| |+++.++++.+.+.+.... ....+
T Consensus 159 ~~~~~~livD~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g-G~i~~~~~~~~~~~~~~~~-----~~~~~ 232 (349)
T cd06454 159 KKYGAILFVDEAHSVGVYGPHGRGVEEFGGLTDDVDIIMGTLGKAFGAVG-GYIAGSKELIDYLRSYARG-----FIFST 232 (349)
T ss_pred HHcCCEEEEEccccccccCCCCCChhhhccccccCcEEEeechhhhcccC-CEEECCHHHHHHHHHhchh-----hhccC
Confidence 9999999999999876542 22234568999999999888887 8888887665544332110 01124
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEe-cCCcHHHHHhc--C
Q psy15216 1631 TLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN-FIEGESLLMAI--K 1707 (2602)
Q Consensus 1631 t~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~L--~ 1707 (2602)
+.+...++++.++++.... .+..++++.++++++.+.|.+ .++.+..++.. ....+.++ ..+..++...| +
T Consensus 233 ~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~l~~~l~~--~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~~L~~~ 306 (349)
T cd06454 233 SLPPAVAAAALAALEVLQG-GPERRERLQENVRYLRRGLKE--LGFPVGGSPSH---IIPPLIGDDPAKAVAFSDALLER 306 (349)
T ss_pred CCCHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHh--cCCcccCCCCC---cEEEEeCCChHHHHHHHHHHHhC
Confidence 5666777788888886544 467788999999999999987 36655543221 11122222 22345666666 7
Q ss_pred CEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1708 DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1708 gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
||.++++...... ...+++|++++.+++.+++++++++|++
T Consensus 307 gI~~~~~~~~~~~----------------~~~~~iRi~~~~~~~~~~i~~~~~~l~~ 347 (349)
T cd06454 307 GIYVQAIRYPTVP----------------RGTARLRISLSAAHTKEDIDRLLEALKE 347 (349)
T ss_pred CceEEEecCCccC----------------CCCCeEEEEEeCCCCHHHHHHHHHHHHH
Confidence 8888764221110 1127899999999999999999999986
|
The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. |
| >PRK08361 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=9e-21 Score=247.19 Aligned_cols=313 Identities=15% Similarity=0.142 Sum_probs=225.4
Q ss_pred CCCHHHHHHHHHHHhhcc-CC-CCCccchhHHHHHHHHHHHHHHHHHHh----C--CCCCcEEEeCCHHHHHHHHHHhhh
Q psy15216 1404 PIDPRVVDKMIPYLRVQF-GN-PASRNHIYGWTAEKAIEKARNEVAQLI----Y--ADPREIIWTSGATESNNLAIKGAA 1475 (2602)
Q Consensus 1404 ~~~~~v~eal~~~l~~~~-~n-p~~~~~~~~~~~~~~~~~lr~~ia~~~----g--~~~~~iv~t~gaT~al~~al~~l~ 1475 (2602)
+.++.+.+++.+.+.... .+ |.. ...++|+++++++ | +++++|++|+|+++|+..++.++.
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~Y~~~~-----------g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~ 114 (391)
T PRK08361 46 DTPKNIKEAAKRALDEGWTHYTPNA-----------GIPELREAIAEYYKKFYGVDVDVDNVIVTAGAYEATYLAFESLL 114 (391)
T ss_pred CCCHHHHHHHHHHHhcCCCCCCCCC-----------CcHHHHHHHHHHHHHHhCCCCCcccEEEeCChHHHHHHHHHHhc
Confidence 446788888888775421 12 211 2456777777776 3 578899999999999999999886
Q ss_pred hhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCC--CCCcChhHHHhhccCCceEEEEeccccccccccC---
Q psy15216 1476 HFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP--- 1550 (2602)
Q Consensus 1476 ~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~--- 1550 (2602)
++||+|++++|+|+++...+... |++++.++.++ ++.+|+++++++++++++++++++|+||||.++|
T Consensus 115 ----~~g~~Vlv~~p~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~v~i~~p~NPtG~~~~~~~ 187 (391)
T PRK08361 115 ----EEGDEVIIPDPAFVCYVEDAKIA---EAKPIRIPLREENEFQPDPDELLELITKRTRMIVINYPNNPTGATLDKEV 187 (391)
T ss_pred ----CCCCEEEEcCCCCcccHHHHHHc---CCEEEEEecCCccCCCCCHHHHHHhcccccEEEEEeCCCCCCCcCcCHHH
Confidence 89999999999999987665554 99999999875 3569999999999999999999999999999999
Q ss_pred hHHHHHHhhhcCCEEEEecccccCc----ccccCCC--CCccEEEEccccccCCCc--eEEEEEecCCCCccccccccCC
Q psy15216 1551 ILEIGELCRSKGVIFHCDAAQAVGK----IDINIQN--YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGG 1622 (2602)
Q Consensus 1551 l~~I~~ia~~~gi~vivD~a~~~g~----~~~~l~~--~~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~~g~~ 1622 (2602)
+++|+++|++|++++|+|++++... ....+.. ...++++.|+||.+|++| +||+++++++++.+....
T Consensus 188 ~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~GlRiG~~~~~~~~~~~~~~~~---- 263 (391)
T PRK08361 188 AKAIADIAEDYNIYILSDEPYEHFLYEGAKHYPMIKYAPDNTILANSFSKTFAMTGWRLGFVIAPEQVIKDMIKLH---- 263 (391)
T ss_pred HHHHHHHHHHcCeEEEEEcccccceeCCCCCCCHhhcCCCCEEEEecCchhcCCcHhhhhhhccCHHHHHHHHHHH----
Confidence 8889999999999999999975321 1111111 235688899999999888 899999887666553321
Q ss_pred ccccCCCCCcchhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEe--cCC
Q psy15216 1623 HEYGLRSGTLATHQIVGMGEAFRL--ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN--FIE 1698 (2602)
Q Consensus 1623 ~~~~~~~gt~~~~~~~al~~aL~~--~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~--~~~ 1698 (2602)
....++.+...+.++..+|.. ....+++.+++++++++.+.+.|.+ ++++.+..+... ....+.++ ..+
T Consensus 264 ---~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~-~~~~~~~~p~g~---~~~~~~l~~~~~~ 336 (391)
T PRK08361 264 ---AYIIGNVASFVQIAGIEALRSKESWKAVEEMRKEYNERRKLVLKRLKE-MPHIKVFEPKGA---FYVFANIDETGMS 336 (391)
T ss_pred ---hhhccCCChHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHh-CCCCeecCCCEE---EEEEEECCCCCCC
Confidence 111123344444444455542 1134678888889999999999987 667766533211 11112233 234
Q ss_pred cHHHHHhc---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1699 GESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1699 ~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
..++...| +||.+.+|..|... ..+++||+++. +.++++.+++.|++
T Consensus 337 ~~~l~~~l~~~~gv~v~pg~~f~~~-----------------~~~~iRi~~~~--~~~~l~~al~~l~~ 386 (391)
T PRK08361 337 SEDFAEWLLEKARVVVIPGTAFGKA-----------------GEGYIRISYAT--SKEKLIEAMERMEK 386 (391)
T ss_pred HHHHHHHHHHhCCEEEcCchhhCCC-----------------CCCEEEEEecC--CHHHHHHHHHHHHH
Confidence 56666554 59999998876432 12789999984 67888888888876
|
|
| >PRK00950 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.3e-21 Score=246.16 Aligned_cols=306 Identities=15% Similarity=0.156 Sum_probs=219.8
Q ss_pred CCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEE-eCCHHHHHHHHHHhhhhhhcc
Q psy15216 1402 TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIW-TSGATESNNLAIKGAAHFYKK 1480 (2602)
Q Consensus 1402 ~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~-t~gaT~al~~al~~l~~~~~~ 1480 (2602)
...+++.+.+++.+..+....+|.. ...++|+.+++++|++++++++ ++|++++++.++.++. +
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~y~~~-----------~~~~lr~~ia~~~~~~~~~i~~~~~Ga~~~i~~~~~~~~----~ 109 (361)
T PRK00950 45 PLGPSPKAVEAIEKELSKIHRYPEP-----------DAPELREALSKYTGVPVENIIVGGDGMDEVIDTLMRTFI----D 109 (361)
T ss_pred CCCCCHHHHHHHHHHHHhhcCCCCC-----------CHHHHHHHHHHHhCCCHHHEEEeCCCHHHHHHHHHHHhc----C
Confidence 4466778888888877654444443 1377999999999999899999 7888999999988876 7
Q ss_pred CCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccCCceEEEEeccccccccccChHHHHHHhhh
Q psy15216 1481 RGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRS 1560 (2602)
Q Consensus 1481 ~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~~ia~~ 1560 (2602)
+||+|++++|.|+.+...++ ..|++++.++.+.++.+|+++++++++++++++++++|+||||.++|.++|.++|++
T Consensus 110 ~gd~vlv~~p~y~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~ 186 (361)
T PRK00950 110 PGDEVIIPTPTFSYYEISAK---AHGAKPVYAKREEDFSLDVDSVLNAITEKTKVIFLCTPNNPTGNLIPEEDIRKILES 186 (361)
T ss_pred CCCEEEEcCCChHHHHHHHH---HcCCEEEEeecCCCCCcCHHHHHHHhccCCCEEEEeCCCCCCCCCcCHHHHHHHHHH
Confidence 99999999998887665444 349999999977777899999999999899999999999999999999999999999
Q ss_pred cCCEEEEecccccCcc--ccc-CCCCCccEEEEccccccCCCc--eEEEEEecCCCCccccccccCCccccCCCCCcchh
Q psy15216 1561 KGVIFHCDAAQAVGKI--DIN-IQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATH 1635 (2602)
Q Consensus 1561 ~gi~vivD~a~~~g~~--~~~-l~~~~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~ 1635 (2602)
+|+++|+|++|..... ... +...+.-+++.|++|.+|++| +||+++++++++.+..... ..+.+..
T Consensus 187 ~~~~li~De~y~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~~~~~~~~~~~~~~~~---------~~~~~~~ 257 (361)
T PRK00950 187 TDALVFVDEAYVEFAEYDYTPLALEYDNLIIGRTFSKVFGLAGLRIGYGFVPEWLIDYYMRAKT---------PFSLTRL 257 (361)
T ss_pred CCcEEEEECchhhhCccchHHHHHhcCCEEEEEeehHhhcCchhhcchhcCCHHHHHHHHHhcC---------CCCCCHH
Confidence 9999999999863220 011 112223477789999988888 8999998776655543221 1123334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecCCcHHHHHhc--CCEEEcc
Q psy15216 1636 QIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDIAVSS 1713 (2602)
Q Consensus 1636 ~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~v~~ 1713 (2602)
.+.++..++.. ...+++..++.+++++++.+.|. +.+. ++. .....+.++..+..++...| +||.+++
T Consensus 258 ~~~~a~~~l~~-~~~~~~~~~~~~~~r~~l~~~l~-----~~~~-~~~---~~~i~~~~~~~~~~~~~~~l~~~gv~v~~ 327 (361)
T PRK00950 258 SQAAAIAALSD-KEYIEKSIEHGIKSREYLYNELP-----FKVY-PSE---ANFVLVDVTPMTAKEFCEELLKRGVIVRD 327 (361)
T ss_pred HHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHhhcC-----eeEC-CCc---ceEEEEECCCCCHHHHHHHHHHCCEEEee
Confidence 44444444442 23355666666777777766653 3332 211 11222223334566777666 7999998
Q ss_pred ccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1714 GSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1714 g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
+..|... ..+++|+|++ +.+++++++++|++
T Consensus 328 ~~~f~~~-----------------~~~~lRis~~---~~~~~~~l~~~L~~ 358 (361)
T PRK00950 328 CTSFRGL-----------------GDYYIRVSIG---TFEENERFLEILKE 358 (361)
T ss_pred CCccCCC-----------------CCCeEEEECC---CHHHHHHHHHHHHH
Confidence 7655321 1378999998 77899999999986
|
|
| >PRK12414 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-20 Score=243.81 Aligned_cols=318 Identities=14% Similarity=0.094 Sum_probs=223.9
Q ss_pred CCCHHHHHHHHHHHhhh-cCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCC--C-CcEEEeCCHHHHHHHHHHhcccccc
Q psy15216 8 PIDPRVVDKMIPYLRVQ-FGNPASRNHIYGWTAEKAIEKARNEVAQLIYAD--P-REIIWTSGATESNNLAIKGAAHFYK 83 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~-~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~--~-~~Iv~t~g~T~al~~~~~~l~~~~~ 83 (2602)
++++.+.+++.+.+... ..|+ .......+.+.+.+++++++|++ + ++|++|+|+++|+..++.++.
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~Y~------~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~it~g~~~al~~~~~~l~---- 111 (384)
T PRK12414 42 APDPALVEGVARAMRDGHNQYA------PMAGIAALREALAEKTERLYGARYDPASEVTVIASASEGLYAAISALV---- 111 (384)
T ss_pred CCCHHHHHHHHHHHHhCCCCcC------CCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEECChHHHHHHHHHHhc----
Confidence 55788888888776532 1121 11223456677777777888874 3 579999999999999999987
Q ss_pred cCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCC-CCccChHHHHhhccCCceEEEEecccCccccccc---HHHHH
Q psy15216 84 KRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIG 159 (2602)
Q Consensus 84 ~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~-~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~---l~~I~ 159 (2602)
.+||+|++++|+|+.+...++.. |++++.++.++ ++.+|++.|++++++++++|++++|+||||.+++ +++|+
T Consensus 112 ~~gd~Vlv~~p~y~~~~~~~~~~---g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~NPTG~~~s~~~~~~i~ 188 (384)
T PRK12414 112 HPGDEVIYFEPSFDSYAPIVRLQ---GATPVAIKLSPEDFRVNWDEVAAAITPRTRMIIVNTPHNPSATVFSAADLARLA 188 (384)
T ss_pred CCCCEEEEeCCCccchHHHHHHc---CCEEEEEecCccccccCHHHHHhhcCcccEEEEEcCCCCCCCcCCCHHHHHHHH
Confidence 89999999999999987766655 99999999875 5679999999999999999999999999999986 66788
Q ss_pred HHHHhcCCEEEEeccccccc----ccccCCC----CCccEEEeccccccCCCC--cEEEEEecCCCCcccceecCCCccc
Q psy15216 160 ELCRSKGVIFHCDAAQAVGK----IDINIQN----YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEY 229 (2602)
Q Consensus 160 ~la~~~g~~livD~a~a~g~----~~~dl~~----~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~ 229 (2602)
++|++||+++|+|++|.... ....+.. .+..+++.|+||.+|++| +||+++++++++.+.....
T Consensus 189 ~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pGlRiG~~v~~~~l~~~l~~~~~------ 262 (384)
T PRK12414 189 QLTRNTDIVILSDEVYEHVVFDGARHHSMARHRELAERSVIVSSFGKSYHVTGWRVGYCLAPAELMDEIRKVHQ------ 262 (384)
T ss_pred HHHHHCCeEEEEhhhhhhccCCCCCccCcccCcCccCcEEEEecccccccCccceEEEEecCHHHHHHHHHHHh------
Confidence 88999999999999986321 1111211 113488889999999888 7999999887776654321
Q ss_pred cccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc---cChhHH
Q psy15216 230 GLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF---IEGESL 306 (2602)
Q Consensus 230 ~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~---~~~~~~ 306 (2602)
......+.+...++..+|+.. ....+....+++.++.+.+.|.+ .++.+..+... ...++.++. .+..++
T Consensus 263 -~~~~~~s~~~q~a~~~~l~~~-~~~~~~~~~~~~~r~~l~~~L~~--~g~~~~~~~gg---~~~~~~~~~~~~~~~~~~ 335 (384)
T PRK12414 263 -FMVFSADTPMQHAFAEALAEP-ASYLGLGAFYQRKRDLLARELAG--SRFELLPSEGS---FFMLARFRHFSDESDSDF 335 (384)
T ss_pred -heecCCCcHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHHHHHHh--CCCeecCCCcc---eEEEEcccccCCCCHHHH
Confidence 112234445555555555421 12345667778888889999977 36665533221 122223332 234455
Q ss_pred HHH-h--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 307 LMA-I--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 307 ~~~-L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
+.. + +||.+.+|..|... + ...+++||+++. ++++++..+++|.+
T Consensus 336 ~~~~l~~~gV~v~pg~~f~~~-----------~----~~~~~iRis~~~--~~~~~~~~~~rl~~ 383 (384)
T PRK12414 336 VLRLIRDARVATIPLSAFYTD-----------G----TDTGLIRLSFSK--DDATLVEGARRLCS 383 (384)
T ss_pred HHHHHHhCCEEEecchhhcCC-----------C----CCCCEEEEEecC--CHHHHHHHHHHHhh
Confidence 533 3 79999999876431 0 113789999994 68899998888864
|
|
| >TIGR03537 DapC succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.2e-21 Score=243.68 Aligned_cols=311 Identities=15% Similarity=0.132 Sum_probs=220.9
Q ss_pred CCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHh----C--CCCC-cEEEeCCHHHHHHHHHHhhh
Q psy15216 1403 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI----Y--ADPR-EIIWTSGATESNNLAIKGAA 1475 (2602)
Q Consensus 1403 ~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~----g--~~~~-~iv~t~gaT~al~~al~~l~ 1475 (2602)
.+.++.+.+++.+.......|++.. ...++|+.+++++ | ++++ +|++|+|+++++..++.++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~Y~~~~----------G~~~lr~aia~~~~~~~g~~~~~~~~Iiit~Gs~~ai~~~~~~~~ 81 (350)
T TIGR03537 12 EPTPPFIRKALIDAVPEVSQYPSAL----------GTKALREAISGWFERRFGVKLDPDAQVLPSAGSKEAIFHFPLVFI 81 (350)
T ss_pred CCCCHHHHHHHHHHHhccCCCCCCC----------CCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHHHHHc
Confidence 3557788888888765443344321 1345667777765 6 4676 89999999999999999887
Q ss_pred hhhccCC---CEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCC--CCCcChhHHHhhccCCceEEEEeccccccccccC
Q psy15216 1476 HFYKKRG---KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP 1550 (2602)
Q Consensus 1476 ~~~~~~g---d~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~ 1550 (2602)
++| |+|+++.|.|+.+...+... |++++.++.+. ++.+|++++++++.++++++++++|+||||.++|
T Consensus 82 ----~~g~~~d~Vl~~~p~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~ 154 (350)
T TIGR03537 82 ----DPEEDRRRVIFGTPGYPVYERGALFA---GGEPTAVKLKKEDGFLLRLEKVEKSILEETKIVWINYPHNPTGATAP 154 (350)
T ss_pred ----CCCCCCceEEEcCCCCcchHHHHHhc---CCEEEEcccCcccCCccCHHHHHHhhhhccEEEEEeCCCCCcCcccC
Confidence 666 79999999999998887766 99999999863 3458999999999999999999999999999999
Q ss_pred ---hHHHHHHhhhcCCEEEEeccccc---CcccccCCCC--CccEEEEccccccCCCc--eEEEEEecCCCCcccccccc
Q psy15216 1551 ---ILEIGELCRSKGVIFHCDAAQAV---GKIDINIQNY--KVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHG 1620 (2602)
Q Consensus 1551 ---l~~I~~ia~~~gi~vivD~a~~~---g~~~~~l~~~--~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~~g 1620 (2602)
+++|+++|++||+++|+|++++. +..+.++... ...+++.|++|.+|++| +||++.++++.+.+.....
T Consensus 155 ~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~GlRiG~~~~~~~~~~~~~~~~~- 233 (350)
T TIGR03537 155 RSYLKETIAMCREHGIILCSDECYTEIYFGEPPHSALEVGIENVLAFHSLSKRSGMTGYRSGFVAGDEKLISFLRKLRA- 233 (350)
T ss_pred HHHHHHHHHHHHHcCcEEEEeccccccccCCCCCchhhcCcCCEEEEeecccccCCccccceeeecCHHHHHHHHHHHH-
Confidence 88899999999999999999863 2222222222 23477779999888778 8999988776666654321
Q ss_pred CCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEE--EEec-C
Q psy15216 1621 GGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNI--SFNF-I 1697 (2602)
Q Consensus 1621 ~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~--~~~~-~ 1697 (2602)
.+.. +.+.....++.+++.. .....+.+.+++++++.+.+.|.+ .++.+..+ . ...++ .++. .
T Consensus 234 -----~~~~-~~~~~~q~~~~~~l~~-~~~~~~~r~~l~~~~~~~~~~l~~--~g~~~~~~-~----g~~~~~~~~~~~~ 299 (350)
T TIGR03537 234 -----NFGV-ASPDFVQAAAKAAWSD-DNHVLERRKIFKRKRDLFIEFFNK--VGLEYLYP-D----ATFYLWVKVPSGI 299 (350)
T ss_pred -----hhcc-CCCHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHHHHHHHH--CCCcccCC-C----eEEEEEEECCCCC
Confidence 1111 2222333334344432 234566777888888888888877 35554422 1 12222 2332 2
Q ss_pred CcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1698 EGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1698 ~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
+...+...| +||.+.+|..|... ..+++|+++. .+.++++.++++|++
T Consensus 300 ~~~~l~~~L~~~gv~v~~g~~f~~~-----------------~~~~~Ri~~~--~~~~~~~~~l~~~~~ 349 (350)
T TIGR03537 300 DAKDYALRLLENGIVVAPGENFGSG-----------------EEGYVRVALV--PTLEECEEALRLWER 349 (350)
T ss_pred CHHHHHHHHHHCCEEEcCchhhCCC-----------------CCCEEEEEec--CCHHHHHHHHHHHhc
Confidence 456666666 89999998877432 1278999986 478999999998875
|
Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. |
| >PLN00143 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-20 Score=246.71 Aligned_cols=316 Identities=14% Similarity=0.108 Sum_probs=217.8
Q ss_pred CCCCHHHHHHHHHHHhhh--cCCCCCCCcchhhhHHHHHHHHHHHHHHHh------CCCCCcEEEeCCHHHHHHHHHHhc
Q psy15216 7 TPIDPRVVDKMIPYLRVQ--FGNPASRNHIYGWTAEKAIEKARNEVAQLI------YADPREIIWTSGATESNNLAIKGA 78 (2602)
Q Consensus 7 ~~~p~~v~~a~~~~l~~~--~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~------g~~~~~Iv~t~g~T~al~~~~~~l 78 (2602)
-++|+.+.+++.+++... ..|+. .....++|+++|+++ ++++++|++|+|+++|+.+++.++
T Consensus 48 ~~~p~~~~~a~~~~~~~~~~~~Y~~----------~~G~~~lr~aia~~~~~~~g~~~~~~~I~it~G~~~al~~~~~~l 117 (409)
T PLN00143 48 FRTTNIAEDAIVEAVRSAKFNSYAP----------TGGILPARRAIADYLSNDLPYQLSPDDVYLTLGCKHAAEIIIKVL 117 (409)
T ss_pred CCCCHHHHHHHHHHHhCcCCCCCCC----------CCCCHHHHHHHHHHHHhhcCCCCCHhhEEEecChHHHHHHHHHHH
Confidence 478889999999887642 11211 112345677777776 357789999999999999999999
Q ss_pred ccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccC--CCCccChHHHHhhccCCceEEEEecccCccccccc--
Q psy15216 79 AHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK--NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP-- 154 (2602)
Q Consensus 79 ~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~--~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~-- 154 (2602)
. ++||.|+++.|.|+.+....... |++++.++.+ .++.+|+++|+++++++++++++++||||||.+++
T Consensus 118 ~----~~gd~v~v~~P~y~~~~~~~~~~---g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~nP~NPTG~~~s~~ 190 (409)
T PLN00143 118 A----RPEANILLPRPGFPDVETYAIFH---HLEIRHFDLLPEKGWEVDLDAVEAIADENTIAMVIINPGNPCGSVYSYE 190 (409)
T ss_pred c----CCCCEEEEcCCCCcCHHHHHHHc---CCEEEEEeccCCCCCcCCHHHHHHhcccCCEEEEEECCCCCCCCccCHH
Confidence 8 89999999999999987777665 9999999874 34578999999999889999999999999999999
Q ss_pred -HHHHHHHHHhcCCEEEEeccccccc---c---cc-cCCCCCccEEEeccccccCCCC--cEEEEEe-c-CCCCcc---c
Q psy15216 155 -ILEIGELCRSKGVIFHCDAAQAVGK---I---DI-NIQNYKVDLMSFSAHKIYGPKG--IGALYIR-R-NPRTRI---E 219 (2602)
Q Consensus 155 -l~~I~~la~~~g~~livD~a~a~g~---~---~~-dl~~~~~D~~~~S~~K~~Gp~G--~G~l~~~-~-~~~~~l---~ 219 (2602)
+++|+++|++|++++|+|++|..-. . ++ .+.....-+++.|+||.|+.+| +||++++ + .+.+.+ .
T Consensus 191 ~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~pGlRvG~~v~~~p~~~~~~~~~~~ 270 (409)
T PLN00143 191 HLNKIAETARKLGILVIADEVYGHIVFGSKPFVPMGLFASIVPVITLGSISKRWMIPGWGLGWLVTCDPSGLLQICEIAD 270 (409)
T ss_pred HHHHHHHHHHHcCCeEEEEccccccccCCCCCcchhhhcccCcEEEEccchhhcCCCccceEEEEeeCchhhhhhHHHHH
Confidence 5667888999999999999986321 1 11 1122223478889999998888 8999984 3 232211 1
Q ss_pred ceecCCCccccccccCcchhHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEE
Q psy15216 220 AQIHGGGHEYGLRSGTLATHQIVGMGEAFRL-ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISF 298 (2602)
Q Consensus 220 ~~~~g~~~~~~~~~gt~~~~~~~al~~al~~-~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~ 298 (2602)
.+... ...... ++.+...++..+|+- ...++++..+++++.++++.+.|.+ +++......+.. ...+++.+
T Consensus 271 ~~~~~----~~~~~~-~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~-~~~~~~~~~p~g--g~f~w~~l 342 (409)
T PLN00143 271 SIKKA----LNPAPF-PPTFIQAAIPEILEKTTEDFFSKTINILRAALAFCYDKLKE-IPCIMCPQKAEG--AFFALVKL 342 (409)
T ss_pred HHHHH----HhccCC-CCchHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCCCCCe--eEEEEEec
Confidence 11000 000111 244455555555542 2346778888888888888888876 443322211111 12233333
Q ss_pred cc------cChhHHHHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 299 NF------IEGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 299 ~~------~~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
+. .+..+++..+ +||.+.+|..|.. .+++||+++ .+.++++..+++|++
T Consensus 343 ~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~-------------------~~~iRi~~~--~~~~~l~~al~rl~~ 400 (409)
T PLN00143 343 NLLLLEDIEDDMEFCLKLAKEESLIILPGVTVGL-------------------KNWLRITFA--VEQSSLEDGLGRLKS 400 (409)
T ss_pred chhhcCCCCCHHHHHHHHHHhCCEEEeCccccCC-------------------CCeEEEEEc--CCHHHHHHHHHHHHH
Confidence 32 1344554433 7999999876532 279999998 468899999999885
|
|
| >PRK08068 transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.1e-21 Score=247.45 Aligned_cols=313 Identities=12% Similarity=0.091 Sum_probs=220.1
Q ss_pred CCCHHHHHHHHHHHhhh--cCCCCCCCcchhhhHHHHHHHHHHHHHHHh----C--CCCC-cEEEeCCHHHHHHHHHHhc
Q psy15216 8 PIDPRVVDKMIPYLRVQ--FGNPASRNHIYGWTAEKAIEKARNEVAQLI----Y--ADPR-EIIWTSGATESNNLAIKGA 78 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~--~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~----g--~~~~-~Iv~t~g~T~al~~~~~~l 78 (2602)
++++.+.+++.+.+... +.|+. .....++|+++++++ | ++++ +|++|+|+++++..++.++
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~Y~~----------~~g~~~lr~aia~~~~~~~g~~~~~~~~i~it~G~~~~l~~~~~~~ 114 (389)
T PRK08068 45 PTPEHIVEALQEAAENPANHKYSP----------FRGYPFLKEAAADFYKREYGVTLDPETEVAILFGGKAGLVELPQCL 114 (389)
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCC----------CCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHHHHHHHHh
Confidence 45667788888776531 12211 112456677777776 5 5677 7999999999999999988
Q ss_pred ccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCC--CCccChHHHHhhccCCceEEEEecccCcccccccHH
Q psy15216 79 AHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPIL 156 (2602)
Q Consensus 79 ~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~ 156 (2602)
. ++||.|++++|.|+.+...++.. |++++.++.++ ++.+|++++++.++++++++++++||||||.+++.+
T Consensus 115 ~----~~gd~vlv~~P~y~~~~~~~~~~---g~~~~~i~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~P~NPTG~~~s~~ 187 (389)
T PRK08068 115 M----NPGDTILVPDPGYPDYLSGVALA---RAQFETMPLIAENNFLPDYTKIPEEVAEKAKLMYLNYPNNPTGAVATKA 187 (389)
T ss_pred C----CCCCEEEEcCCCCcchHHHHHhc---CCEEEEeecccccCCCCCHHHHHHhccccceEEEEECCCCCCCCcCCHH
Confidence 7 89999999999999988877765 99999999864 356899999999988999999999999999999964
Q ss_pred ---HHHHHHHhcCCEEEEeccccc----ccccccC---C-CCCccEEEeccccccCCCC--cEEEEEecCCCCcccceec
Q psy15216 157 ---EIGELCRSKGVIFHCDAAQAV----GKIDINI---Q-NYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIH 223 (2602)
Q Consensus 157 ---~I~~la~~~g~~livD~a~a~----g~~~~dl---~-~~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~ 223 (2602)
+|.++|++|++++|+|++|.. +..+..+ . ..+..+++.|++|.||.+| +||+++++++++.+.....
T Consensus 188 ~~~~l~~la~~~~~~ii~Deay~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~l~~~l~~~~~ 267 (389)
T PRK08068 188 FFEETVAFAKKHNIGVVHDFAYGAIGFDGQKPVSFLQTPGAKDVGIELYTLSKTFNMAGWRVAFAVGNESVIEAINLLQD 267 (389)
T ss_pred HHHHHHHHHHHcCeEEEEehhhhhhccCCCCCcChhhCCCccCCEEEEecchhccCCccceeEeEecCHHHHHHHHHHHh
Confidence 677789999999999999853 1111111 1 1123488889999999888 8999998887776654321
Q ss_pred CCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc-cC
Q psy15216 224 GGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IE 302 (2602)
Q Consensus 224 g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~-~~ 302 (2602)
.+..++++..+.+ +..++.....+++..++++.+.++++.+.|.+ .++.+..+.. ...+.+.++. .+
T Consensus 268 ------~~~~~~~~~~q~~-~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~--~g~~~~~~~g---~~~~~v~~~~~~~ 335 (389)
T PRK08068 268 ------HLFVSLFGAIQDA-AIEALLSDQSCVAELVARYESRRNAFISACRE--IGWEVDAPKG---SFFAWMPVPKGYT 335 (389)
T ss_pred ------hccCCCChHHHHH-HHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH--CCCcccCCCe---eEEEEEECCCCCC
Confidence 1112233333333 33444322355678888889999999999977 3655442211 1122333432 35
Q ss_pred hhHHHHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 303 GESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 303 ~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
+.++...| +||.+++|..+... ..+++||+++. .++.+...++.|++
T Consensus 336 ~~~~~~~l~~~~gi~v~pg~~f~~~-----------------~~~~iRi~~~~--~~~~l~~al~~l~~ 385 (389)
T PRK08068 336 SEQFADLLLEKAHVAVAPGNGFGEH-----------------GEGYVRVGLLT--DEERLREAVERIGK 385 (389)
T ss_pred HHHHHHHHHHhCCEEEecchHhCcc-----------------CCCeEEEEEcC--CHHHHHHHHHHHHH
Confidence 66777766 49999988765321 13799999973 56777777777765
|
|
| >COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-20 Score=231.23 Aligned_cols=333 Identities=17% Similarity=0.166 Sum_probs=239.6
Q ss_pred CHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCEE
Q psy15216 10 DPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHI 89 (2602)
Q Consensus 10 p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~V 89 (2602)
....++++.+.+.+.|..++ +...++++++++++|++ ..+.++|+|.||+++++++. .+|||+|
T Consensus 14 ~~~e~~~v~~vl~sg~i~~G-----------~~v~~FE~~~ae~~G~k--~ava~~sgT~AL~laL~al~---ig~GDeV 77 (374)
T COG0399 14 GEEELAAVQEVLKSGWLTGG-----------PFVRRFEQAFAEYLGVK--YAVAVSSGTAALHLALLALA---IGPGDEV 77 (374)
T ss_pred chHHHHHHHHHHHcCCeecC-----------hHHHHHHHHHHHHhCCC--eEEEecChHHHHHHHHHhcC---CCCCCEE
Confidence 46677888888887554443 26788999999999976 78999999999999999776 6899999
Q ss_pred EEcCCCCcccHHHHHHHHhCCcEEEEeccCC-CCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHhcCCE
Q psy15216 90 ITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVI 168 (2602)
Q Consensus 90 lv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~-~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~~g~~ 168 (2602)
|+++.+|.+..+++.+. |++++++++++ ++.+|++.++++|+++||+|+..|. .|...|+++|.++|++||++
T Consensus 78 I~ps~TfvATan~i~~~---Ga~PVFvDid~~T~nid~~~ie~aIt~~tKAIipVhl---~G~~~dm~~i~~la~~~~l~ 151 (374)
T COG0399 78 IVPSFTFVATANAVLLV---GAKPVFVDIDPDTLNIDPDLIEAAITPRTKAIIPVHL---AGQPCDMDAIMALAKRHGLP 151 (374)
T ss_pred EecCCchHHHHHHHHHc---CCeEEEEecCCcccCCCHHHHHHHcccCCeEEEEehh---ccCCCCHHHHHHHHHHcCCe
Confidence 99999999999998887 99999999996 5889999999999999999999998 99999999999999999999
Q ss_pred EEEecccccccccccCCCCC--ccEEEeccc--cccC-CCCcEEEEEec-CCCCcccceecCCCcc---ccccccCcchh
Q psy15216 169 FHCDAAQAVGKIDINIQNYK--VDLMSFSAH--KIYG-PKGIGALYIRR-NPRTRIEAQIHGGGHE---YGLRSGTLATH 239 (2602)
Q Consensus 169 livD~a~a~g~~~~dl~~~~--~D~~~~S~~--K~~G-p~G~G~l~~~~-~~~~~l~~~~~g~~~~---~~~~~gt~~~~ 239 (2602)
||.|+||+.|...- .+..| -|+-++||| |.++ ..| |+++.++ ++.++++.+...|... .++..-.+.+.
T Consensus 152 vIEDaAqa~Ga~y~-gk~vGt~Gd~~~fSF~~~K~ittgEG-Gav~tnd~ela~k~~~lr~hG~~~~~~~~y~~~~~G~N 229 (374)
T COG0399 152 VIEDAAQAHGATYK-GKKVGSFGDIGAFSFHATKNLTTGEG-GAVVTNDEELAEKARSLRNHGLSRDAVFKYLHEELGYN 229 (374)
T ss_pred EEEEcchhccCeec-CcccccccceEEEEecCCCCccccCc-eEEEeCCHHHHHHHHHHHHhCcCCCccccceeeecccc
Confidence 99999999998642 22222 367777776 6443 355 6666654 4555555433332221 11111111110
Q ss_pred -HHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCC--CCCceEEEEEcc--cChhHHHHHh--C
Q psy15216 240 -QIVGMGEAFRLAR-IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNN--RIPHNLNISFNF--IEGESLLMAI--K 311 (2602)
Q Consensus 240 -~~~al~~al~~~~-~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~--~~~~~~~~~~~~--~~~~~~~~~L--~ 311 (2602)
-+--+.+|+.+.+ +.+++..++.+++++++.+.|++ .+++.+...+.. ...+...+.++. .+.+.+...| +
T Consensus 230 ~rm~~iqAAigl~QL~~l~~~~~~R~~~a~~Y~~~l~~-~~~~~~p~~~~~~~~~~~~~~i~~~~~~~~R~~l~~~L~~~ 308 (374)
T COG0399 230 YRLTEIQAAIGLAQLERLDEINERRREIAQIYAEALKG-LPGITLPPEPDGAVHAWHLYTILVDEEGISRDALMESLKEA 308 (374)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCccccCCCCCceeeeeeeEEEecCCCCCHHHHHHHHHhC
Confidence 1112334444322 55789999999999999999987 666655543333 223344444443 4567787777 4
Q ss_pred CeEEcccccCCCCCCChHHHHH------HcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 312 DIAVSSGSACTSASLEPSYVLR------ALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 312 gI~v~~g~~~~~~~~~~~~~~~------~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
||. ...++.|-+.++.+... .+...+....+.+++.+++..+++|+++++++|++.
T Consensus 309 gi~--~~~~~~P~~~~~~~~~~~~~~~~~lp~ae~~~~r~l~LP~~p~l~~~~~~~V~~~l~~~ 370 (374)
T COG0399 309 GVG--AVVYFRPLHLQPAYRQLGYFPEGDLPNAEDLSERILSLPLHPNLSEEDVDRVIEALKEV 370 (374)
T ss_pred CCC--ceEEeeccccchhhhcccccccCCCchHHHHhhCeEEccCCCCCCHHHHHHHHHHHHHH
Confidence 555 44455554444433322 233444555688999999999999999999999964
|
|
| >PRK07337 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.1e-21 Score=248.14 Aligned_cols=315 Identities=13% Similarity=0.061 Sum_probs=219.9
Q ss_pred CCCHHHHHHHHHHHhhh-cCCCCCCCcchhhhHHHHHHHHHHHHHHHh----C--CCCCcEEEeCCHHHHHHHHHHhccc
Q psy15216 8 PIDPRVVDKMIPYLRVQ-FGNPASRNHIYGWTAEKAIEKARNEVAQLI----Y--ADPREIIWTSGATESNNLAIKGAAH 80 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~-~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~----g--~~~~~Iv~t~g~T~al~~~~~~l~~ 80 (2602)
++|+.+.+++.+.+... ..++.. ....++|+.+|+++ | +++++|++|+|+++|+++++.++.
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~Y~~~----------~g~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~- 111 (388)
T PRK07337 43 TAPEPVVEAAARALRRGVTQYTSA----------LGLAPLREAIAAWYARRFGLDVAPERIVVTAGASAALLLACLALV- 111 (388)
T ss_pred CCCHHHHHHHHHHHhcCCCCCCCC----------CCCHHHHHHHHHHHHHHhCCCCChHhEEEecCcHHHHHHHHHHhc-
Confidence 45778888888877531 112211 12456677777765 4 477899999999999999999887
Q ss_pred ccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCC--CCccChHHHHhhccCCceEEEEecccCccccccc---H
Q psy15216 81 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---I 155 (2602)
Q Consensus 81 ~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~---l 155 (2602)
++||+|++++|+|+++...+... |++++.++.+. ++.+|++++++.++++++++++++|+||||.+++ +
T Consensus 112 ---~~gd~Vlv~~p~y~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~ 185 (388)
T PRK07337 112 ---ERGDEVLMPDPSYPCNRHFVAAA---EGRPVLVPSGPAERFQLTAADVEAAWGERTRGVLLASPSNPTGTSIAPDEL 185 (388)
T ss_pred ---CCCCEEEEeCCCchhhHHHHHHc---CCEEEEeecCCccCCcCCHHHHHhhcCccceEEEEECCCCCCCcCcCHHHH
Confidence 89999999999999987766554 89999999864 4679999999999999999999999999999998 5
Q ss_pred HHHHHHHHhcCCEEEEeccccccc-c--cccCCCCCcc-EEEeccccccCCCC--cEEEEEecCCCCcccceecCCCccc
Q psy15216 156 LEIGELCRSKGVIFHCDAAQAVGK-I--DINIQNYKVD-LMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEY 229 (2602)
Q Consensus 156 ~~I~~la~~~g~~livD~a~a~g~-~--~~dl~~~~~D-~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~ 229 (2602)
++|+++|+++++++|+|+++..-. . +.....++.+ +++.|+||.+|++| +||+++++++++.+......
T Consensus 186 ~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G~RiG~~~~~~~l~~~l~~~~~~----- 260 (388)
T PRK07337 186 RRIVEAVRARGGFTIVDEIYQGLSYDAAPVSALSLGDDVITINSFSKYFNMTGWRLGWLVVPEALVGTFEKLAQN----- 260 (388)
T ss_pred HHHHHHHHHCCCEEEEeccccccccCCCCcChhhccCCEEEEEechhhcCCchhheeeeecCHHHHHHHHHHHHH-----
Confidence 678888999999999999975211 1 1122223334 45679999998888 89999998777666543311
Q ss_pred cccccCcchhHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc------cC
Q psy15216 230 GLRSGTLATHQIVGMGEAFRL-ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF------IE 302 (2602)
Q Consensus 230 ~~~~gt~~~~~~~al~~al~~-~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~------~~ 302 (2602)
...+.+.+...++..++.. ....+.+.+.++++.++.+.+.|.+ . ++.....+. .....++.++. .+
T Consensus 261 --~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~-~-~~~~~~~p~--~g~f~~~~~~~~~~~~~~~ 334 (388)
T PRK07337 261 --LFICASALAQHAALACFEPDTLAIYERRRAEFKRRRDFIVPALES-L-GFKVPVMPD--GAFYVYADCRGVAHPAAGD 334 (388)
T ss_pred --hccCCChHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHh-c-CCccccCCC--eeEEEEEecccccCCCCCC
Confidence 1123444444444455541 1123566777888888888888877 3 443321111 12233333432 24
Q ss_pred hhHHHHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 303 GESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 303 ~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
..++...+ +||.+.+|..|... ...+++||+++. +++++...+++|.+
T Consensus 335 ~~~~~~~ll~~~gv~v~pg~~f~~~----------------~~~~~~Ri~~~~--~~~~l~~~l~rl~~ 385 (388)
T PRK07337 335 SAALTQAMLHDAGVVLVPGRDFGPH----------------APRDYIRLSYAT--SMSRLEEAVARLGK 385 (388)
T ss_pred HHHHHHHHHHhCCEEEeCchhhCCC----------------CCCCEEEEEecC--CHHHHHHHHHHHHH
Confidence 55666553 69999998876431 113799999985 57888888888874
|
|
| >PRK02731 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-20 Score=245.11 Aligned_cols=302 Identities=16% Similarity=0.105 Sum_probs=222.2
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCC
Q psy15216 1404 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK 1483 (2602)
Q Consensus 1404 ~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd 1483 (2602)
..++.+.+++.+.......+|... ..++|+.+++++++++++|++|+|++++++.++.++. ++||
T Consensus 45 ~~~~~~~~a~~~~~~~~~~y~~~~-----------~~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~l~----~~gd 109 (367)
T PRK02731 45 GPSPKAIEAIRAAADELHRYPDGS-----------GFELKAALAEKFGVDPERIILGNGSDEILELLARAYL----GPGD 109 (367)
T ss_pred CCCHHHHHHHHHHHHhhcCCCCCc-----------HHHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHHHhc----CCCC
Confidence 456778888888776544444431 2578999999999988999999999999999988886 7999
Q ss_pred EEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccCCceEEEEeccccccccccChHHHHHHhhhc--
Q psy15216 1484 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSK-- 1561 (2602)
Q Consensus 1484 ~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~~ia~~~-- 1561 (2602)
+|++++|.|+.+..... ..|++++.++. .++.+|++++++++++++++|++++|+||||.++|.++|.++++.+
T Consensus 110 ~vl~~~p~y~~~~~~~~---~~g~~~~~~~~-~~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~ 185 (367)
T PRK02731 110 EVIYSEHGFAVYPIAAQ---AVGAKPVEVPA-KDYGHDLDAMLAAVTPRTRLVFIANPNNPTGTYLPAEEVERFLAGVPP 185 (367)
T ss_pred EEEEecCCHHHHHHHHH---HcCCeEEEecc-cCCCCCHHHHHHHhCCCCcEEEEeCCCCCCCcCCCHHHHHHHHHhCCC
Confidence 99999999977655443 34999999987 4567899999999999999999999999999999999999998874
Q ss_pred CCEEEEecccccCcc------cccCCCC-CccEEEEccccccCCCc--eEEEEEecCCCCccccccccCCccccCCCCCc
Q psy15216 1562 GVIFHCDAAQAVGKI------DINIQNY-KVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTL 1632 (2602)
Q Consensus 1562 gi~vivD~a~~~g~~------~~~l~~~-~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~ 1632 (2602)
|+++++|++|..... .++..+. ...+++.|++|.+|++| +||+++++++++.+..... ....
T Consensus 186 ~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~~~~~~~~l~~~~~---------~~~~ 256 (367)
T PRK02731 186 DVLVVLDEAYAEYVRRKDYEDGLELVAKFPNVVVTRTFSKAYGLAGLRVGYGIAPPEIIDALNRVRQ---------PFNV 256 (367)
T ss_pred CcEEEEECcHHHhccCcCcccHHHHHhhcCCEEEEeeehHhhcCcccceeeeeCCHHHHHHHHHccC---------CCCC
Confidence 999999999753221 1111111 23466779999888777 6999999877666553321 1122
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEec---CCcHHHHHhc--C
Q psy15216 1633 ATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF---IEGESLLMAI--K 1707 (2602)
Q Consensus 1633 ~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~L--~ 1707 (2602)
+...+.++..+++. ...+++.+++++++++++.+.|.+ . ++.+. ++ ...++++.. .+..++...| +
T Consensus 257 ~~~~~~~a~~~l~~-~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~-~~-----~g~~~~i~~~~~~~~~~~~~~L~~~ 327 (367)
T PRK02731 257 NSLALAAAVAALDD-DAFVEKSRALNAEGMAWLTEFLAE-L-GLEYI-PS-----VGNFILVDFDDGKDAAEAYQALLKR 327 (367)
T ss_pred CHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHH-C-CCccC-CC-----CceEEEEECCCCCCHHHHHHHHHHC
Confidence 33444444455542 234677788888899999999987 3 55543 21 122333332 3556676666 8
Q ss_pred CEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1708 DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1708 gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
||.++++..+.. .+++|++++ +.+++++++++|++
T Consensus 328 gI~v~~~~~~~~-------------------~~~iRis~~---~~~e~~~l~~aL~~ 362 (367)
T PRK02731 328 GVIVRPVAGYGL-------------------PNALRITIG---TEEENRRFLAALKE 362 (367)
T ss_pred CEEEEeCCCCCC-------------------CCeEEEecC---CHHHHHHHHHHHHH
Confidence 999998765532 178999987 78999999999987
|
|
| >PRK07568 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-20 Score=246.85 Aligned_cols=323 Identities=15% Similarity=0.179 Sum_probs=225.0
Q ss_pred CCCCCCC-CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHh-----CCCCCcEEEeCCHHHHHHHH
Q psy15216 1 MDYSATT-PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI-----YADPREIIWTSGATESNNLA 74 (2602)
Q Consensus 1 Ld~a~~~-~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~-----g~~~~~Iv~t~g~T~al~~~ 74 (2602)
|+.+... ++|+.+.+++.+.......++.. ....++|+++++++ ++++++|++|+|+++|++++
T Consensus 35 l~~~~~~~~~~~~~~~a~~~~~~~~~~Y~~~----------~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~G~~~al~~~ 104 (397)
T PRK07568 35 LNIGQPDIKTPEVFFEAIKNYDEEVLAYSHS----------QGIPELREAFAKYYKKWGIDVEPDEILITNGGSEAILFA 104 (397)
T ss_pred ecCCCCCCCCCHHHHHHHHHHhcCCcCcCCC----------CCCHHHHHHHHHHHHHhCCCCCcceEEEcCChHHHHHHH
Confidence 3444444 56788888887765432223221 23467788888887 46788999999999999999
Q ss_pred HHhcccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCC-CC-c-cChHHHHhhccCCceEEEEecccCcccc
Q psy15216 75 IKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NG-L-ITLSQLEEKICSDTILVSVMLVNNEIGV 151 (2602)
Q Consensus 75 ~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~-~~-~-ld~e~l~~~i~~~tklv~i~~~~npTG~ 151 (2602)
+.++. ++||+|++++|.|+.+...++. .|++++.++.+. ++ . .+++++++++++++++|++++|+||||.
T Consensus 105 ~~~l~----~~gd~Vl~~~p~y~~~~~~~~~---~g~~~~~v~~~~~~g~~~~~~~~l~~~~~~~~~~v~i~~p~NPtG~ 177 (397)
T PRK07568 105 MMAIC----DPGDEILVPEPFYANYNGFATS---AGVKIVPVTTKIEEGFHLPSKEEIEKLITPKTKAILISNPGNPTGV 177 (397)
T ss_pred HHHhc----CCCCEEEEecCCCccHHHHHHH---cCCEEEEeecCcccCCCCCCHHHHHHhcCccceEEEEECCCCCCCc
Confidence 98886 7999999999999887655544 499999998753 33 3 3679999999999999999999999999
Q ss_pred ccc---HHHHHHHHHhcCCEEEEeccccccc----cc---ccCCC-CCccEEEeccccccCCCC--cEEEEEe-cCCCCc
Q psy15216 152 IQP---ILEIGELCRSKGVIFHCDAAQAVGK----ID---INIQN-YKVDLMSFSAHKIYGPKG--IGALYIR-RNPRTR 217 (2602)
Q Consensus 152 ~~~---l~~I~~la~~~g~~livD~a~a~g~----~~---~dl~~-~~~D~~~~S~~K~~Gp~G--~G~l~~~-~~~~~~ 217 (2602)
+++ +++|+++|+++|+++|+|+++..-. .. ..+.. ...-+++.|+||.+|++| +||++++ +++++.
T Consensus 178 ~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~~~~~~~~~~~~ 257 (397)
T PRK07568 178 VYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSALSLEGLEDRVIIIDSVSKRYSACGARIGCLISKNKELIAA 257 (397)
T ss_pred cCCHHHHHHHHHHHHHCCcEEEEeccchhcccCCCCccChhhcCCCcCCEEEEecchhhccCCCcceEEEecCCHHHHHH
Confidence 997 6778999999999999999985221 11 12221 122377889999888777 8999885 455544
Q ss_pred ccceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEE
Q psy15216 218 IEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNIS 297 (2602)
Q Consensus 218 l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~ 297 (2602)
+..... ...+++.....++..+++....+.++.++++++.++.+.+.|.+ .+++.+..+.. ....++.
T Consensus 258 ~~~~~~--------~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~p~g---~~~~~~~ 325 (397)
T PRK07568 258 AMKLCQ--------ARLSPPTLEQIGAAALLDTPESYFDEVREEYKKRRDILYEELNK-IPGVVCEKPKG---AFYIIAK 325 (397)
T ss_pred HHHHhh--------ccCCCCcHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHhc-CCCceecCCCc---ceEEEEe
Confidence 432211 01234555555666666533456778888889999999999977 56666543322 1222334
Q ss_pred EcccChhHHHHHh--------CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 298 FNFIEGESLLMAI--------KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 298 ~~~~~~~~~~~~L--------~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
++..+..++...+ +||.+.+|..|... +....+++||+++. +.++++.+++.|++
T Consensus 326 l~~~~~~~~~~~l~~~~~~~~~gv~v~pg~~f~~~--------------~~~~~~~iRls~~~--~~~~~~~~~~~l~~ 388 (397)
T PRK07568 326 LPVDDAEDFAKWLLTDFNYNGETVMVAPASGFYAT--------------PGLGKNEIRIAYVL--NEEDLKRAMEILKE 388 (397)
T ss_pred cCCCCHHHHHHHHHhhcccccceEEEeCchHhcCC--------------CCCCCCeEEEEEeC--CHHHHHHHHHHHHH
Confidence 4433455666555 48999988766321 01113789999973 67999999999985
|
|
| >PRK05764 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-20 Score=247.43 Aligned_cols=313 Identities=14% Similarity=0.114 Sum_probs=224.7
Q ss_pred CCCHHHHHHHHHHHhhh-cCCCCCCCcchhhhHHHHHHHHHHHHHHHh------CCCCCcEEEeCCHHHHHHHHHHhccc
Q psy15216 8 PIDPRVVDKMIPYLRVQ-FGNPASRNHIYGWTAEKAIEKARNEVAQLI------YADPREIIWTSGATESNNLAIKGAAH 80 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~-~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~------g~~~~~Iv~t~g~T~al~~~~~~l~~ 80 (2602)
++++.+.+++.+.+... ..++. . ....++|+.+++++ ++++++|++|+|+++|+..++.++.
T Consensus 44 ~~~~~~~~~~~~~~~~~~~~Y~~------~----~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~~~- 112 (393)
T PRK05764 44 DTPEHIKEAAIEALDDGKTKYTP------A----AGIPELREAIAAKLKRDNGLDYDPSQVIVTTGAKQALYNAFMALL- 112 (393)
T ss_pred CCCHHHHHHHHHHHhcCCCCcCC------C----CChHHHHHHHHHHHHHHhCCCCCHHHEEEeCCcHHHHHHHHHHhc-
Confidence 45677788888777531 11111 1 12456677777766 3577899999999999999999887
Q ss_pred ccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCC--CCccChHHHHhhccCCceEEEEecccCccccccc---H
Q psy15216 81 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---I 155 (2602)
Q Consensus 81 ~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~---l 155 (2602)
++||.|++++|.|+.+...++.. |++++.++.++ ++.+|+++++++++++++++++++|+||||.++| +
T Consensus 113 ---~~gd~vl~~~p~y~~~~~~~~~~---g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~NPtG~~~~~~~~ 186 (393)
T PRK05764 113 ---DPGDEVIIPAPYWVSYPEMVKLA---GGVPVFVPTGEENGFKLTVEQLEAAITPKTKALILNSPSNPTGAVYSPEEL 186 (393)
T ss_pred ---CCCCEEEecCCCCcchHHHHHHc---CCEEEEEecCcccCCcCCHHHHHHhhCccceEEEEECCCCCCCcccCHHHH
Confidence 79999999999999877666554 99999999864 4568999999999989999999999999999987 6
Q ss_pred HHHHHHHHhcCCEEEEecccccccc------cc-c--CCCCCccEEEeccccccCCCC--cEEEEEecCCCCcccceecC
Q psy15216 156 LEIGELCRSKGVIFHCDAAQAVGKI------DI-N--IQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHG 224 (2602)
Q Consensus 156 ~~I~~la~~~g~~livD~a~a~g~~------~~-d--l~~~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g 224 (2602)
++|+++|++||+++++|++|+.... ++ . ....+.++++.|++|.+|++| +||++.++++++.+.....
T Consensus 187 ~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~i~~~~~~~~~~~~~~~- 265 (393)
T PRK05764 187 EAIADVAVEHDIWVLSDEIYEKLVYDGAEFTSIASLSPELRDRTITVNGFSKAYAMTGWRLGYAAGPKELIKAMSKLQS- 265 (393)
T ss_pred HHHHHHHHHCCcEEEEeccccceeeCCCCcccHHHcCCCCcCCEEEEecCcccccCccceeEEEecCHHHHHHHHHHHh-
Confidence 7788999999999999999864221 11 1 122345788899999989888 8999998877776654321
Q ss_pred CCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEccc---
Q psy15216 225 GGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI--- 301 (2602)
Q Consensus 225 ~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~--- 301 (2602)
...+.++.....++..+++....++++.++++.++++.+.+.|.+ .+++.+..+.. ....++.++..
T Consensus 266 ------~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~g---~~~~~~~~~~~~~~ 335 (393)
T PRK05764 266 ------HSTSNPTSIAQYAAVAALNGPQDEVEEMRQAFEERRDLMVDGLNE-IPGLECPKPEG---AFYVFPNVSKLLGK 335 (393)
T ss_pred ------hcccCCChHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhh-CCCCcccCCCc---ceEEEEeccccccc
Confidence 112234444444554555422345667778888888889999977 56777654322 12223333321
Q ss_pred ---ChhHHHHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 302 ---EGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 302 ---~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
+..++...+ +||.+.+|..|.. .+++||+++. ++++++.++++|.+.
T Consensus 336 ~~~~~~~~~~~l~~~~gi~v~~g~~f~~-------------------~~~vRis~~~--~~~~~~~~i~~l~~~ 388 (393)
T PRK05764 336 SITDSLEFAEALLEEAGVAVVPGIAFGA-------------------PGYVRLSYAT--SLEDLEEGLERIERF 388 (393)
T ss_pred ccCCHHHHHHHHHHhCCEEEccccccCC-------------------CCEEEEEecC--CHHHHHHHHHHHHHH
Confidence 125565554 5999998876632 2899999984 799999999999853
|
|
| >PRK07392 threonine-phosphate decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.7e-20 Score=241.80 Aligned_cols=304 Identities=15% Similarity=0.070 Sum_probs=221.1
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCC
Q psy15216 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK 87 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd 87 (2602)
++|+.+.+++.+.+.....+|.. ...++|+.+|+++++++++|++|+|+++++.+++.++. +||
T Consensus 35 ~~~~~~~~a~~~~~~~~~~Y~~~-----------~~~~Lr~aia~~~~v~~~~I~it~G~~~~i~~~~~~l~-----~g~ 98 (360)
T PRK07392 35 GPPESVIAAIQSALSALRHYPDP-----------DYRELRLALAQHHQLPPEWILPGNGAAELLTWAGRELA-----QLR 98 (360)
T ss_pred CCCHHHHHHHHHHHHHhhcCCCc-----------CHHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHHHhC-----CCC
Confidence 67888999988877654334432 13578999999999999999999999999999998865 688
Q ss_pred EEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCc-----cChHHHHhhccCCceEEEEecccCcccccccHHHHHHHH
Q psy15216 88 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGL-----ITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELC 162 (2602)
Q Consensus 88 ~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~-----ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la 162 (2602)
.|++++|.|+.+...++.. |++++.++.+.++. .+++++++.. ++++++++++||||||.+++.++|.+++
T Consensus 99 ~vlv~~P~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~nP~NPTG~~~~~~~l~~l~ 174 (360)
T PRK07392 99 AVYLITPAFGDYRRALRAF---GATVKELPLPLDQPSPGLTLRLQTLPPQL-TPNDGLLLNNPHNPTGKLWSREAILPLL 174 (360)
T ss_pred eEEEECCCcHHHHHHHHHc---CCeEEEEecccccCCcccccCHHHHHHhc-cCCCEEEEeCCCCCCCCCcCHHHHHHHH
Confidence 9999999999988777765 99999999875432 4677776654 5789999999999999999999999999
Q ss_pred HhcCCEEEEecccccccc-----c-cc-CCCCCccEEEeccccccCCCC--cEEEEEecCCCCcccceecCCCccccccc
Q psy15216 163 RSKGVIFHCDAAQAVGKI-----D-IN-IQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRS 233 (2602)
Q Consensus 163 ~~~g~~livD~a~a~g~~-----~-~d-l~~~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~ 233 (2602)
+++++ +|+|+++..-.. + +. +.....-+++.|++|.||++| +||+++++++++.+.... ..
T Consensus 175 ~~~~~-~IiDE~y~~~~~~~~~~s~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~~v~~~~~~~~~~~~~---------~~ 244 (360)
T PRK07392 175 EQFAL-VVVDEAFMDFLPPDAEQSLIPCLAEYPNLIILRSLTKFYSLPGLRLGYAIAHPDRLQRWQQWR---------DP 244 (360)
T ss_pred HHCCE-EEEECchhhhccCccccchHHHhhcCCCEEEEEechhhhcCCchheeeeeCCHHHHHHHHhhC---------CC
Confidence 99985 666999753211 0 11 112223478889999999888 899999887766654322 12
Q ss_pred cCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcccChhHHHHHh---
Q psy15216 234 GTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI--- 310 (2602)
Q Consensus 234 gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L--- 310 (2602)
++++.....++.++++. ..+.++..+++++.++++.+.|.. ++++.+.. .. .....+.++. +..++...+
T Consensus 245 ~~~s~~~q~~~~~~l~~-~~~~~~~~~~~~~~r~~l~~~L~~-~~~~~~~~-~~---~~fl~~~~~~-~~~~l~~~ll~~ 317 (360)
T PRK07392 245 WPVNGLAAAAAIAALAD-RDFQQQTWAWLPPAREALFQGLAS-LPGLTPLP-SA---ANFLLVQSQG-SALQLQEKLLQQ 317 (360)
T ss_pred CCCCHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHh-CCCcEECC-CC---CCEEEEEcCC-CHHHHHHHHHhh
Confidence 45666666666667652 234455566778888889999976 67877653 11 1222333332 455666553
Q ss_pred CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 311 KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 311 ~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
+||.+++|..+... .++++||+++ +.++.+++.++|++
T Consensus 318 ~gv~v~pg~~f~~~-----------------~~~~iRi~~~---~~~~~~~l~~al~~ 355 (360)
T PRK07392 318 HRILIRDCLSFPEL-----------------GDRYFRVAVR---TEAENQRLLEALAA 355 (360)
T ss_pred CCEEEEeCCCCCCC-----------------CCCEEEEEeC---CHHHHHHHHHHHHH
Confidence 59999999876421 1379999998 66778888888875
|
|
| >PLN02656 tyrosine transaminase | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.9e-21 Score=248.85 Aligned_cols=313 Identities=14% Similarity=0.136 Sum_probs=219.7
Q ss_pred CCCCHHHHHHHHHHHhhh--cCCCCCCCcchhhhHHHHHHHHHHHHHHHhC------CCCCcEEEeCCHHHHHHHHHHhc
Q psy15216 7 TPIDPRVVDKMIPYLRVQ--FGNPASRNHIYGWTAEKAIEKARNEVAQLIY------ADPREIIWTSGATESNNLAIKGA 78 (2602)
Q Consensus 7 ~~~p~~v~~a~~~~l~~~--~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g------~~~~~Iv~t~g~T~al~~~~~~l 78 (2602)
.++|+.+++++.+++... ..|.. .....++|++++++++ +++++|++|+|+++|+++++.++
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~Y~~----------~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l 116 (409)
T PLN02656 47 FHTTHVAQEAVVDALQSNKFNGYAP----------TVGLPQARRAIAEYLSRDLPYKLSLDDVFITSGCTQAIDVALSML 116 (409)
T ss_pred CCCCHHHHHHHHHHHhcCCCCCCCC----------CCCCHHHHHHHHHHHHHhcCCCCCcccEEEeCChHHHHHHHHHHH
Confidence 366888999998887642 12211 1124566777777763 46789999999999999999998
Q ss_pred ccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCC--CCccChHHHHhhccCCceEEEEecccCccccccc--
Q psy15216 79 AHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP-- 154 (2602)
Q Consensus 79 ~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~-- 154 (2602)
. ++||+|++++|.|+.+....... |++++.+++++ ++.+|+++++++++++++++++++|+||||.+++
T Consensus 117 ~----~~gd~Vlv~~p~y~~~~~~~~~~---g~~~~~i~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~P~NPtG~~~s~~ 189 (409)
T PLN02656 117 A----RPGANILLPRPGFPIYELCAAFR---HLEVRYVDLLPEKGWEVDLDAVEALADQNTVALVIINPGNPCGNVYSYQ 189 (409)
T ss_pred h----CCCCeEEEeCCCCCcHHHHHHHc---CCEEEEEeCCCcCCCCCCHHHHHHHhccCceEEEEECCCCCCCCCCCHH
Confidence 7 89999999999999886666554 99999999853 4579999999999999999999999999999986
Q ss_pred -HHHHHHHHHhcCCEEEEeccccccc----ccccC---CCCCccEEEeccccccCCCC--cEEEEEec--------CCCC
Q psy15216 155 -ILEIGELCRSKGVIFHCDAAQAVGK----IDINI---QNYKVDLMSFSAHKIYGPKG--IGALYIRR--------NPRT 216 (2602)
Q Consensus 155 -l~~I~~la~~~g~~livD~a~a~g~----~~~dl---~~~~~D~~~~S~~K~~Gp~G--~G~l~~~~--------~~~~ 216 (2602)
+++|+++|++||+++|+|++++.-. ....+ .....-+++.||+|.|+.+| +||+++++ ++++
T Consensus 190 ~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~pGlRiG~~i~~~~~~~~~~~~~~~ 269 (409)
T PLN02656 190 HLKKIAETAEKLKILVIADEVYGHLAFGSNPFVPMGVFGSIVPVLTLGSLSKRWIVPGWRLGWFVTTDPSGSFRDPKIVE 269 (409)
T ss_pred HHHHHHHHHHHcCCEEEEehhhhhcccCCCCcccHHHhcccCcEEEEcccchhccCcceeEEEEEEeCcccccccHHHHH
Confidence 6778889999999999999986321 11111 12223477889999988888 89999852 3333
Q ss_pred cccceecCCCccccccccCcchhHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEE
Q psy15216 217 RIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRL-ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLN 295 (2602)
Q Consensus 217 ~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~-~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~ 295 (2602)
.+.... .. .+.++.....++..+|+. ...++.+.++++++.++.+.+.|.. ++++....++.. ...++
T Consensus 270 ~~~~~~-------~~-~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~-~~~~~~~~~p~g--g~~~w 338 (409)
T PLN02656 270 RIKKYF-------DI-LGGPATFIQAAVPTILEQTDESFFKKTINILKQSSDICCDRIKE-IPCITCPHKPEG--SMAVM 338 (409)
T ss_pred HHHHHH-------hh-hcCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhh-CCCCcCCcCCCe--EEEEE
Confidence 333221 01 123455566666666652 2345778888888999999999977 444322111111 12222
Q ss_pred EEEcc-----c-ChhHHHHH-h--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHH
Q psy15216 296 ISFNF-----I-EGESLLMA-I--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLL 366 (2602)
Q Consensus 296 ~~~~~-----~-~~~~~~~~-L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L 366 (2602)
+.++. . +..+++.. + +||.+.+|..|.. .+++||+++. ++++++..++.|
T Consensus 339 ~~l~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~fg~-------------------~~~iRi~~~~--~~e~l~eal~rl 397 (409)
T PLN02656 339 VKLNLSLLEDISDDIDFCFKLAREESVIILPGTAVGL-------------------KNWLRITFAA--DPSSLEEALGRI 397 (409)
T ss_pred EecchhhcCCCCCHHHHHHHHHHhCCEEEecchhcCC-------------------CCeEEEEeCC--CHHHHHHHHHHH
Confidence 33321 1 23344333 3 7999999976632 2799999994 688899988888
Q ss_pred Hh
Q psy15216 367 KM 368 (2602)
Q Consensus 367 ~~ 368 (2602)
++
T Consensus 398 ~~ 399 (409)
T PLN02656 398 KS 399 (409)
T ss_pred HH
Confidence 85
|
|
| >PRK08363 alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-20 Score=245.44 Aligned_cols=317 Identities=11% Similarity=0.090 Sum_probs=221.3
Q ss_pred CCCHHHHHHHHHHHhhh-cCCCCCCCcchhhhHHHHHHHHHHHHHHHh----C--CCCCcEEEeCCHHHHHHHHHHhccc
Q psy15216 8 PIDPRVVDKMIPYLRVQ-FGNPASRNHIYGWTAEKAIEKARNEVAQLI----Y--ADPREIIWTSGATESNNLAIKGAAH 80 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~-~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~----g--~~~~~Iv~t~g~T~al~~~~~~l~~ 80 (2602)
++|+.+.+++.+.+... ..++. .....++|+++++++ | +++++|++|+|+++|+.+++.++.
T Consensus 46 ~p~~~~~~~~~~~~~~~~~~Y~~----------~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~~- 114 (398)
T PRK08363 46 QPPEHMKEAYCRAIKEGHNYYGP----------SEGLPELREAIVKREKRKNGVDITPDDVRVTAAVTEALQLIFGALL- 114 (398)
T ss_pred CCCHHHHHHHHHHHHcCCCCCCC----------CCCcHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHhC-
Confidence 57888888888877532 11211 112456777777776 4 577899999999999999999987
Q ss_pred ccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEe-ccCC-CCccChHHHHhhccCCceEEEEecccCccccccc---H
Q psy15216 81 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYL-KPKN-NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---I 155 (2602)
Q Consensus 81 ~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v-~~~~-~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~---l 155 (2602)
++||.|+++.|+|+.+...+... |++++.+ +.++ ++.+|++++++.+++++++++++||+||||.+++ +
T Consensus 115 ---~~gd~Vl~~~p~y~~~~~~~~~~---g~~~v~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~ 188 (398)
T PRK08363 115 ---DPGDEILIPGPSYPPYTGLVKFY---GGVPVEYRTIEEEGWQPDIDDIRKKITEKTKAIAVINPNNPTGALYEKKTL 188 (398)
T ss_pred ---CCCCEEEEcCCCCcchHHHHHHc---CCEEEEeccccccCCcCCHHHHHhhCCcceEEEEEECCCCCCCcCcCHHHH
Confidence 89999999999999987766654 8888877 4443 4568999999999999999999999999999998 7
Q ss_pred HHHHHHHHhcCCEEEEecccccccc-----c-ccCCCCCccEEEeccccccCCCC--cEEEEE--ecCCCCcccceecCC
Q psy15216 156 LEIGELCRSKGVIFHCDAAQAVGKI-----D-INIQNYKVDLMSFSAHKIYGPKG--IGALYI--RRNPRTRIEAQIHGG 225 (2602)
Q Consensus 156 ~~I~~la~~~g~~livD~a~a~g~~-----~-~dl~~~~~D~~~~S~~K~~Gp~G--~G~l~~--~~~~~~~l~~~~~g~ 225 (2602)
++|.++|+++|+++|+|++|+.... + ..+.....-+++.||||.|+.+| +||+++ ++++++.+.......
T Consensus 189 ~~l~~~a~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~~~~~~~~~~~~~l~~~~~~~ 268 (398)
T PRK08363 189 KEILDIAGEHDLPVISDEIYDLMTYEGKHVSPGSLTKDVPVIVMNGLSKVYFATGWRLGYIYFVDPEGKLAEVREAIDKL 268 (398)
T ss_pred HHHHHHHHHcCeEEEEhhhhhhhccCCcccCHHHcCcCCcEEEEecchhccCCccceEEEEEEeCcHHHHHHHHHHHHHH
Confidence 7889999999999999999863211 1 11111122466789999988777 899998 555444443322100
Q ss_pred CccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc---cC
Q psy15216 226 GHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF---IE 302 (2602)
Q Consensus 226 ~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~---~~ 302 (2602)
.. ...+++.+...++..+|.....++.+..++++++++++.+.|.+ .+++.+..+... .+.++.++. .+
T Consensus 269 ---~~-~~~~~s~~~q~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~L~~-~~~~~~~~p~g~---~~~~~~l~~~~~~~ 340 (398)
T PRK08363 269 ---AR-IRLCPNTPAQFAAIAGLTGPMDYLEEYMKKLKERRDYIYKRLNE-IPGISTTKPQGA---FYIFPRIEEGPWKD 340 (398)
T ss_pred ---hc-ccccCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhc-CCCCEecCCCeE---EEEEEEeccCCCCC
Confidence 00 01234555555555666422456777788889999999999977 567766533221 122223443 13
Q ss_pred hhHHHHH-h--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 303 GESLLMA-I--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 303 ~~~~~~~-L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
..+++.. | +||.+.+|..|... .++++|++++ .++++++..+++|++
T Consensus 341 ~~~~~~~~l~~~gV~v~~g~~f~~~-----------------~~~~iRis~~--~~~~~l~~~l~~l~~ 390 (398)
T PRK08363 341 DKEFVLDVLHEAHVLFVHGSGFGEY-----------------GAGHFRLVFL--PPVEILEEAMDRFEE 390 (398)
T ss_pred HHHHHHHHHHhCCEEEeCchhhCCC-----------------CCCeEEEEec--CCHHHHHHHHHHHHH
Confidence 4444433 3 79999998766321 1379999996 468999999999985
|
|
| >PLN02656 tyrosine transaminase | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.7e-20 Score=245.11 Aligned_cols=310 Identities=14% Similarity=0.123 Sum_probs=220.5
Q ss_pred CCCCHHHHHHHHHHHhhc--cCCCCCccchhHHHHHHHHHHHHHHHHHHhC------CCCCcEEEeCCHHHHHHHHHHhh
Q psy15216 1403 TPIDPRVVDKMIPYLRVQ--FGNPASRNHIYGWTAEKAIEKARNEVAQLIY------ADPREIIWTSGATESNNLAIKGA 1474 (2602)
Q Consensus 1403 ~~~~~~v~eal~~~l~~~--~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g------~~~~~iv~t~gaT~al~~al~~l 1474 (2602)
.++++.+.+++.+.+... ..|... ....++|++++++++ +++++|++|+|+++|+.+++.++
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~Y~~~----------~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l 116 (409)
T PLN02656 47 FHTTHVAQEAVVDALQSNKFNGYAPT----------VGLPQARRAIAEYLSRDLPYKLSLDDVFITSGCTQAIDVALSML 116 (409)
T ss_pred CCCCHHHHHHHHHHHhcCCCCCCCCC----------CCCHHHHHHHHHHHHHhcCCCCCcccEEEeCChHHHHHHHHHHH
Confidence 466788999998887642 122111 124567888888773 47789999999999999999988
Q ss_pred hhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCC--CCCcChhHHHhhccCCceEEEEeccccccccccC--
Q psy15216 1475 AHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP-- 1550 (2602)
Q Consensus 1475 ~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~-- 1550 (2602)
. ++||+|++++|.|+.+....... |++++.+++++ ++.+|+++++++++++++++++++|+||||.+++
T Consensus 117 ~----~~gd~Vlv~~p~y~~~~~~~~~~---g~~~~~i~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~P~NPtG~~~s~~ 189 (409)
T PLN02656 117 A----RPGANILLPRPGFPIYELCAAFR---HLEVRYVDLLPEKGWEVDLDAVEALADQNTVALVIINPGNPCGNVYSYQ 189 (409)
T ss_pred h----CCCCeEEEeCCCCCcHHHHHHHc---CCEEEEEeCCCcCCCCCCHHHHHHHhccCceEEEEECCCCCCCCCCCHH
Confidence 7 89999999999999886665554 99999999853 4579999999999999999999999999999986
Q ss_pred -hHHHHHHhhhcCCEEEEecccccCc----cccc---CCCCCccEEEEccccccCCCc--eEEEEEec--------CCCC
Q psy15216 1551 -ILEIGELCRSKGVIFHCDAAQAVGK----IDIN---IQNYKVDLMSFSAHKIYGPKG--IGALYIRR--------NPRT 1612 (2602)
Q Consensus 1551 -l~~I~~ia~~~gi~vivD~a~~~g~----~~~~---l~~~~~D~~v~S~~K~~gp~G--~G~l~~~~--------~~~~ 1612 (2602)
+++|+++|++||+++|+|++++.-. ...+ +.....-+++.||+|.|+++| +||+++++ ++++
T Consensus 190 ~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~pGlRiG~~i~~~~~~~~~~~~~~~ 269 (409)
T PLN02656 190 HLKKIAETAEKLKILVIADEVYGHLAFGSNPFVPMGVFGSIVPVLTLGSLSKRWIVPGWRLGWFVTTDPSGSFRDPKIVE 269 (409)
T ss_pred HHHHHHHHHHHcCCEEEEehhhhhcccCCCCcccHHHhcccCcEEEEcccchhccCcceeEEEEEEeCcccccccHHHHH
Confidence 7788999999999999999986321 1111 112223477889999888888 99999852 3333
Q ss_pred ccccccccCCccccCCCCCcchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEE
Q psy15216 1613 RIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRL-ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLN 1691 (2602)
Q Consensus 1613 ~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~-~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~ 1691 (2602)
.+.... .. .+.++...+.++..+|+. ....+++.++++++.++++.+.|.. ++++....+ |....
T Consensus 270 ~~~~~~-------~~-~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~-~~~~~~~~~-----p~gg~ 335 (409)
T PLN02656 270 RIKKYF-------DI-LGGPATFIQAAVPTILEQTDESFFKKTINILKQSSDICCDRIKE-IPCITCPHK-----PEGSM 335 (409)
T ss_pred HHHHHH-------hh-hcCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhh-CCCCcCCcC-----CCeEE
Confidence 333221 01 123455566666677752 2345777888888899999999976 444322111 22222
Q ss_pred EEEecC---------CcHHHHH-hc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHH
Q psy15216 1692 ISFNFI---------EGESLLM-AI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTI 1759 (2602)
Q Consensus 1692 ~~~~~~---------~~~~~~~-~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li 1759 (2602)
+.+... +..++.. .+ +||.+.+|..|... +++||+++. +.++++..+
T Consensus 336 ~~w~~l~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~fg~~-------------------~~iRi~~~~--~~e~l~eal 394 (409)
T PLN02656 336 AVMVKLNLSLLEDISDDIDFCFKLAREESVIILPGTAVGLK-------------------NWLRITFAA--DPSSLEEAL 394 (409)
T ss_pred EEEEecchhhcCCCCCHHHHHHHHHHhCCEEEecchhcCCC-------------------CeEEEEeCC--CHHHHHHHH
Confidence 222211 2224433 33 79999999877432 799999994 689999999
Q ss_pred HHHHH
Q psy15216 1760 KLLKM 1764 (2602)
Q Consensus 1760 ~~L~~ 1764 (2602)
+.|++
T Consensus 395 ~rl~~ 399 (409)
T PLN02656 395 GRIKS 399 (409)
T ss_pred HHHHH
Confidence 98886
|
|
| >PRK04366 glycine dehydrogenase subunit 2; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.9e-20 Score=241.23 Aligned_cols=332 Identities=16% Similarity=0.167 Sum_probs=225.2
Q ss_pred CCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHH--HHhhhhhhcc
Q psy15216 1403 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLA--IKGAAHFYKK 1480 (2602)
Q Consensus 1403 ~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~a--l~~l~~~~~~ 1480 (2602)
...++.+.+++.+.......+|.. ....+.+..+.+.++++++++++|.+...+..++|+++.+..+ +.... .+
T Consensus 80 ~~~~p~i~~~~~~~~~~~~~tpYq-~e~~sqG~lel~~~~~~~la~l~G~~~~~l~~~~GA~a~~~~l~~~r~~~---~~ 155 (481)
T PRK04366 80 MKYNPKINEKVARLPGFAELHPLQ-PEETVQGALELMYELQEWLKEITGMDAVTLQPAAGAHGELTGLLMIRAYH---EA 155 (481)
T ss_pred CCCCHHHHHHHHhCcchhcCCCCC-ChhhhhHHHHHHHHHHHHHHHHhCCCceEEEeCcHHHHHHHHHHHHHHHh---hc
Confidence 466777777777642111112221 1124556678899999999999998733333334444433322 22221 35
Q ss_pred CCC----EEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccCCceEEEEeccccccccc-cChHHHH
Q psy15216 1481 RGK----HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVI-QPILEIG 1555 (2602)
Q Consensus 1481 ~gd----~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~-~~l~~I~ 1555 (2602)
+|| +|+++++.|+++...+... |++++.++.+.++.+|+++|+++++++|++|++++|+ +||.+ .|+++|+
T Consensus 156 ~Gd~~~~~Vlv~~~~hp~~~~~~~~~---G~~vv~v~~~~~~~~D~e~L~~~i~~~t~~V~v~~Pn-~tG~~~~dl~eI~ 231 (481)
T PRK04366 156 RGDTKRTEVIVPDSAHGTNPASAAMA---GFKVVEIPSNEDGLVDLEALKAAVGEDTAALMLTNPN-TLGLFERNILEIA 231 (481)
T ss_pred cCcCCCCEEEEcCCccHhHHHHHHHc---CCEEEEeecCCCCCcCHHHHHhhcccCCeEEEEeCCC-CccccchHHHHHH
Confidence 666 9999999999998776544 9999999998888999999999999999999999987 89987 5899999
Q ss_pred HHhhhcCCEEEEecccccCcc-cccCCCCCccEEEEcccc-ccCC-----CceEEEEEecCCCCccccccccCCc-----
Q psy15216 1556 ELCRSKGVIFHCDAAQAVGKI-DINIQNYKVDLMSFSAHK-IYGP-----KGIGALYIRRNPRTRIEAQIHGGGH----- 1623 (2602)
Q Consensus 1556 ~ia~~~gi~vivD~a~~~g~~-~~~l~~~~~D~~v~S~~K-~~gp-----~G~G~l~~~~~~~~~l~~~~~g~~~----- 1623 (2602)
++|+++|+++++|++|+.+.. .++..++++|++++++|| +++| +|+|++++++++...+.+.+.+...
T Consensus 232 ~~a~~~gal~iVD~a~~~~~~g~~~~~~~GaD~~~~~~hK~l~~P~g~Ggp~~G~l~~~~~~~~~lp~~~v~~~g~~~~l 311 (481)
T PRK04366 232 EIVHEAGGLLYYDGANLNAILGKARPGDMGFDVVHLNLHKTFSTPHGGGGPGSGPVGVKEELAPFLPVPVVEKDGDRYRL 311 (481)
T ss_pred HHHHHcCCEEEEEecChhhhcccCCccccCCCEEEEechhhcCCCCCCCCCCeeeeeehhhhHhhCCCCeeeccCCceee
Confidence 999999999999999986532 245677899999999999 4434 4578999998877766544322110
Q ss_pred -------cccCCCCCcchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEe
Q psy15216 1624 -------EYGLRSGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN 1695 (2602)
Q Consensus 1624 -------~~~~~~gt~~~~~~~al~~aL~-~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~ 1695 (2602)
..+++.++.+...+.+....+. +..+++.++.++...++++++++|.+ +..+.. + ....+...+.++
T Consensus 312 ~~~r~~~i~r~~a~t~~~l~~~~a~~~l~~~G~~Gl~~~a~~~~~~a~~l~~~L~~-~~~~~~--~--~~~~~~~~~~~~ 386 (481)
T PRK04366 312 DYDRPKSIGRVRAFYGNFGVLVRAYAYIRSLGAEGLREVSEDAVLNANYLKARLKD-IYDLPY--D--RPCMHEFVLSGK 386 (481)
T ss_pred cccccccCCCcccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hCcccC--C--CCeeEEEEEECc
Confidence 1134444544433433334444 45566778888889999999999987 323221 1 111122333322
Q ss_pred -----cCCcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1696 -----FIEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1696 -----~~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
+.+..++...| +||.+... .+ +. ...+.+|+|++.++|.+|||+++++|++.
T Consensus 387 ~~~~~g~~~~~v~~~L~~~Gi~~~~~-~~-p~----------------~~~~~l~is~~e~~t~edid~l~~~l~~i 445 (481)
T PRK04366 387 KLKETGVRTLDIAKRLLDYGFHPPTI-YF-PL----------------IVPEALMIEPTETESKETLDAFIAAMKQI 445 (481)
T ss_pred cccccCCCHHHHHHHHHHCCccCCcc-cc-cc----------------ccCCeEEEcccCCCCHHHHHHHHHHHHHH
Confidence 23556677777 67765411 11 10 01268999999999999999999999974
|
|
| >PRK03321 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=7e-21 Score=245.10 Aligned_cols=299 Identities=13% Similarity=0.101 Sum_probs=219.0
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCC
Q psy15216 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK 87 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd 87 (2602)
++|+.+.+++.+++.....+|.. ..+++|+.+|+++|+++++|++++|+++++..++.++. ++||
T Consensus 35 ~~~~~~~~a~~~~~~~~~~y~~~-----------g~~~lr~~ia~~~~~~~~~I~~~~G~~~~l~~~~~~~~----~~gd 99 (352)
T PRK03321 35 GPLPSVRAAIARAAAGVNRYPDM-----------GAVELRAALAEHLGVPPEHVAVGCGSVALCQQLVQATA----GPGD 99 (352)
T ss_pred CCCHHHHHHHHHHHHhcCcCCCC-----------cHHHHHHHHHHHhCcCHHHEEECCCHHHHHHHHHHHhc----CCCC
Confidence 46778999998877654444432 35789999999999988899999999999999988876 8999
Q ss_pred EEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHh--c
Q psy15216 88 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRS--K 165 (2602)
Q Consensus 88 ~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~--~ 165 (2602)
+|+++.+.|+.+...++ ..|++++.++.++++.+|+++++++++++++++++++|+||||.++|.++|.++|+. +
T Consensus 100 ~Vli~~p~y~~~~~~~~---~~g~~~~~v~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~~~~~ 176 (352)
T PRK03321 100 EVIFAWRSFEAYPILVQ---VAGATPVQVPLTPDHTHDLDAMAAAITDRTRLIFVCNPNNPTGTVVTPAELARFLDAVPA 176 (352)
T ss_pred EEEeCCCCHHHHHHHHH---HcCCEEEEccCCCCCCCCHHHHHHhhccCCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCC
Confidence 99999988877655444 449999999988678899999999999999999999999999999999999999987 5
Q ss_pred CCEEEEecccccccc----c--ccC-CCCCccEEEeccccccCCCC--cEEEEEecCCCCcccceecCCCccccccccCc
Q psy15216 166 GVIFHCDAAQAVGKI----D--INI-QNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTL 236 (2602)
Q Consensus 166 g~~livD~a~a~g~~----~--~dl-~~~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~ 236 (2602)
++++++|++|..... + +.. ...+.-+++.|++|.+|++| +||+++++++++.+.... ..++.
T Consensus 177 ~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~v~~~~~~~~~~~~~---------~~~~~ 247 (352)
T PRK03321 177 DVLVVLDEAYVEYVRDDDVPDGLELVRDHPNVVVLRTFSKAYGLAGLRVGYAVGHPEVIAALRKVA---------VPFSV 247 (352)
T ss_pred CeEEEEechHHHhccCcCCCcHHHHHhhCCCEEEEecchHHhhhHHHhhhhhcCCHHHHHHHHHhc---------CCCCC
Confidence 999999999853211 1 111 11223477779999999888 899999888777765432 13355
Q ss_pred chhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc-cChhHHHHHh--CCe
Q psy15216 237 ATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGESLLMAI--KDI 313 (2602)
Q Consensus 237 ~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~L--~gI 313 (2602)
+.+...++.+++..... +.+..++..+.++.+.+.|.+ .++.+..+ . +.++++.. .+..++.+.| +||
T Consensus 248 s~~~q~~a~~~l~~~~~-~~~~~~~~~~~r~~~~~~L~~--~~~~~~~~-~-----g~~i~i~l~~~~~~~~~~l~~~gI 318 (352)
T PRK03321 248 NSLAQAAAIASLAAEDE-LLERVDAVVAERDRVRAALRA--AGWTVPPS-Q-----ANFVWLPLGERTADFAAAAAEAGV 318 (352)
T ss_pred CHHHHHHHHHHhcCHHH-HHHHHHHHHHHHHHHHHHHHH--CCCccCCC-C-----CCEEEEeCCCCHHHHHHHHHHCCE
Confidence 66666555566652222 333444455556678888876 35543221 1 12234332 3456666666 799
Q ss_pred EEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 314 AVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 314 ~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
.+++ |. ..+|||+++ +.+++++++++|++
T Consensus 319 ~v~~---~~--------------------~~~iRi~~~---~~~~~~~~~~al~~ 347 (352)
T PRK03321 319 VVRP---FA--------------------GEGVRVTIG---APEENDAFLRAARA 347 (352)
T ss_pred EEEc---cC--------------------CCcEEEeeC---CHHHHHHHHHHHHH
Confidence 8874 21 145999987 89999999999986
|
|
| >PRK09147 succinyldiaminopimelate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-20 Score=245.75 Aligned_cols=315 Identities=12% Similarity=0.077 Sum_probs=218.4
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHH----hC---CCCC-cEEEeCCHHHHHHHHHHhcc
Q psy15216 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQL----IY---ADPR-EIIWTSGATESNNLAIKGAA 79 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~----~g---~~~~-~Iv~t~g~T~al~~~~~~l~ 79 (2602)
++|+.+.+++.+.+.....|+... ...++|+.+|++ +| ++++ +|++|+|+++|+.+++.++.
T Consensus 42 ~~~~~~~~~~~~~~~~~~~Y~~~~----------G~~~lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~ 111 (396)
T PRK09147 42 PTPAFIKDALAANLDGLASYPTTA----------GLPALREAIAAWLERRYGLPALDPATQVLPVNGSREALFAFAQTVI 111 (396)
T ss_pred CCCHHHHHHHHHHhhhhcCCCCCC----------CCHHHHHHHHHHHHHHhCCCcCCccceEEECCChHHHHHHHHHHHc
Confidence 457788888887765444444321 123455555554 46 4564 89999999999999999988
Q ss_pred cccccC---CCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCC--CCccChHHHHhhccCCceEEEEecccCccccccc
Q psy15216 80 HFYKKR---GKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP 154 (2602)
Q Consensus 80 ~~~~~~---gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~ 154 (2602)
++ ||.|+++.|.|+.+...+..+ |++++.+++++ ++.+|++++++.+.++++++++++||||||.+++
T Consensus 112 ----~~~~~gd~vlv~~P~y~~~~~~~~~~---g~~~~~vp~~~~~~~~~d~~~l~~~~~~~~k~i~l~nP~NPTG~~~s 184 (396)
T PRK09147 112 ----DRDGPGPLVVCPNPFYQIYEGAALLA---GAEPYFLNCDPANNFAPDFDAVPAEVWARTQLLFVCSPGNPTGAVLP 184 (396)
T ss_pred ----CCCCCCCEEEEcCCCccchHHHHHhc---CCEEEEeccCccccCccCHHHHHHHHhhccEEEEEcCCCCCcCccCC
Confidence 78 899999999999988777666 99999999864 3579999999888889999999999999999998
Q ss_pred ---HHHHHHHHHhcCCEEEEeccccccc-----cccc-C--------CCCCccEEEeccccccCCCC--cEEEEEecCCC
Q psy15216 155 ---ILEIGELCRSKGVIFHCDAAQAVGK-----IDIN-I--------QNYKVDLMSFSAHKIYGPKG--IGALYIRRNPR 215 (2602)
Q Consensus 155 ---l~~I~~la~~~g~~livD~a~a~g~-----~~~d-l--------~~~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~ 215 (2602)
+++|+++|++|++++|+|++|+.-. .++. + ...+.-+++.|++|.+|++| +||++++++++
T Consensus 185 ~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRiG~~~~~~~l~ 264 (396)
T PRK09147 185 LDDWKKLFALSDRYGFVIASDECYSEIYFDEAAPPLGLLEAAAELGRDDFKRLVVFHSLSKRSNVPGLRSGFVAGDAALL 264 (396)
T ss_pred HHHHHHHHHHHHHcCeEEEeeccccccccCCCCCCchhhhhccccCccccccEEEEeccccccCCccceeeeecCCHHHH
Confidence 5567788899999999999986421 1111 0 01123488889999988888 89999988777
Q ss_pred CcccceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEE
Q psy15216 216 TRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLN 295 (2602)
Q Consensus 216 ~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~ 295 (2602)
+.+.... .....+++.....++.+++. ...++.+.++++++.++.+.+.|.+ . +.+..+ ..+.+
T Consensus 265 ~~~~~~~-------~~~~~~~~~~~q~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~L~~-~--~~~~~p-----~~g~f 328 (396)
T PRK09147 265 KKFLLYR-------TYHGCAMPPAVQAASIAAWN-DEAHVRENRALYREKFDAVTPILAP-V--LDVQLP-----DAGFY 328 (396)
T ss_pred HHHHHHh-------hhcccCCCHHHHHHHHHHhc-chhHHHHHHHHHHHHHHHHHHHHHH-h--cCCCCC-----CeeEE
Confidence 6664322 11122344444444444553 2345677788888888888888866 2 222212 12233
Q ss_pred EEEcc-cChhHHHHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 296 ISFNF-IEGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 296 ~~~~~-~~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
+++.. .+..++...| +||.+.+|..|... ..+. ....+++||+++. ++++++.++++|++
T Consensus 329 ~~~~~~~~~~~~~~~ll~~~gv~v~pg~~f~~~---------~~~~--~~~~~~iRi~~~~--~~~~l~~~l~rl~~ 392 (396)
T PRK09147 329 LWAKVPGDDTEFARRLYADYNVTVLPGSYLARE---------AHGV--NPGAGRVRIALVA--PLAECVEAAERIVD 392 (396)
T ss_pred EEEECCCCHHHHHHHHHHhCCEEEeCCcccccc---------ccCC--CCCCCeEEEEecC--CHHHHHHHHHHHHH
Confidence 33332 3455666655 59999999876431 0000 1124799999984 57889999988875
|
|
| >PRK04635 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.9e-21 Score=244.01 Aligned_cols=279 Identities=17% Similarity=0.124 Sum_probs=201.8
Q ss_pred HHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCC-CEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCC
Q psy15216 1439 IEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRG-KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN 1517 (2602)
Q Consensus 1439 ~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~g-d~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~ 1517 (2602)
..++|+++++++|+++++|++|+|+++++..++.++. ++| |+|++++|.|+.+...++. .|++++.++.+.+
T Consensus 62 ~~~Lr~aia~~~~~~~~~I~it~Gs~~~i~~~~~~~~----~~g~d~vlv~~P~y~~y~~~~~~---~g~~v~~v~~~~~ 134 (354)
T PRK04635 62 PPELINAYSAYAGVAPEQILTSRGADEAIELLIRAFC----EPGQDSIACFGPTYGMYAISAET---FNVGVKALPLTAD 134 (354)
T ss_pred HHHHHHHHHHHhCcCHHHEEEeCCHHHHHHHHHHHhc----CCCCCeEEEcCCChHHHHHHHHH---cCCEEEEEecCCC
Confidence 3678999999999999999999999999999999987 788 9999999999887655444 4999999998877
Q ss_pred CCcChhHHHhhccCCceEEEEeccccccccccChHHHHHHhhhc-CCEEEEecccccCccc---ccC-CCCCccEEEEcc
Q psy15216 1518 GLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSK-GVIFHCDAAQAVGKID---INI-QNYKVDLMSFSA 1592 (2602)
Q Consensus 1518 ~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~~ia~~~-gi~vivD~a~~~g~~~---~~l-~~~~~D~~v~S~ 1592 (2602)
+.+|++.++ .+ ++|++|++++|+||||.++|.+++.++++.+ ++++|+|++|...... .++ .....-+++.||
T Consensus 135 ~~~~~~~l~-~~-~~~~li~i~nP~NPTG~~~~~~~l~~l~~~~~~~~vivDeay~~~~~~~s~~~~~~~~~~~iv~~S~ 212 (354)
T PRK04635 135 YQLPLDYIE-QL-DGAKLVFICNPNNPTGTVIDRADIEQLIEMTPDAIVVVDEAYIEFCPEYSVADLLASYPNLVVLRTL 212 (354)
T ss_pred CCCCHHHHH-hc-cCCCEEEEeCCCCCCCccCCHHHHHHHHHhCCCcEEEEeCchHhhccCcchHHHHhhCCCEEEEech
Confidence 889999987 34 7899999999999999999999999988763 7999999997532211 111 111223677799
Q ss_pred ccccCCCc--eEEEEEecCCCCccccccccCCccccCCCCCcchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q psy15216 1593 HKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRL-ARIEMKEELKRILFLQKRLYNGL 1669 (2602)
Q Consensus 1593 ~K~~gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~-~~~~~~~~~~~~~~l~~~l~~~L 1669 (2602)
||++|++| +||+++++++++.+..... ..+.+.....+..++|.. ....+.+..+++.+.++++.+.|
T Consensus 213 SK~~~l~GlRlG~~i~~~~~~~~l~~~~~---------~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L 283 (354)
T PRK04635 213 SKAFALAGARCGFTLANEELIEILMRVIA---------PYPVPLPVSEIATQALSEAGLARMKFQVLDLNAQGARLQAAL 283 (354)
T ss_pred HHHhhhhHHHHhhhhCCHHHHHHHHhhcC---------CCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888 7999999887766653321 112333333333344431 12234556667788889999999
Q ss_pred hhcCCcEEEeCCCCCCCCceEEEEEecCCcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecC
Q psy15216 1670 MESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIG 1747 (2602)
Q Consensus 1670 ~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~ 1747 (2602)
.+ .+++.+.++ .. . ++++...+..++...| +||.++.+.... ..+++|||++
T Consensus 284 ~~-~~~~~~~~~-~g---~--f~~~~~~~~~~~~~~l~~~gv~v~~~~~~~-------------------~~~~lRis~~ 337 (354)
T PRK04635 284 SM-YGGAKVLEG-NG---N--YVLAKFDDVDAVFKALWDAGIVARAYKDPR-------------------LANCIRFSFS 337 (354)
T ss_pred Hh-CCCceECCC-CC---c--EEEEECCCHHHHHHHHHHCCEEEEECCCCC-------------------CCCeEEEEeC
Confidence 87 555666533 21 2 2333222455565555 799987542211 1278999986
Q ss_pred CCCCHHHHHHHHHHHHH
Q psy15216 1748 RFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1748 ~~~t~edid~li~~L~~ 1764 (2602)
+.+|+++++++|++
T Consensus 338 ---~~e~~~~l~~al~~ 351 (354)
T PRK04635 338 ---NRAETDKLIGLIRN 351 (354)
T ss_pred ---CHHHHHHHHHHHHH
Confidence 88999999999985
|
|
| >PRK06348 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.3e-20 Score=242.52 Aligned_cols=314 Identities=14% Similarity=0.069 Sum_probs=221.9
Q ss_pred CCCHHHHHHHHHHHhh-ccCCCCCccchhHHHHHHHHHHHHHHHHHHh------CCCCCcEEEeCCHHHHHHHHHHhhhh
Q psy15216 1404 PIDPRVVDKMIPYLRV-QFGNPASRNHIYGWTAEKAIEKARNEVAQLI------YADPREIIWTSGATESNNLAIKGAAH 1476 (2602)
Q Consensus 1404 ~~~~~v~eal~~~l~~-~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~------g~~~~~iv~t~gaT~al~~al~~l~~ 1476 (2602)
+.++.++++..+.... ...++.. ....++|+.+++++ ++++++|++|+|+++|+.+++.++.
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~Y~~~----------~G~~~lr~~ia~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~- 110 (384)
T PRK06348 42 ITDESIINAAFEDAKKGHTRYTDS----------GGDVELIEEIIKYYSKNYDLSFKRNEIMATVGACHGMYLALQSIL- 110 (384)
T ss_pred CCCHHHHHHHHHHHhcCCCCCCCC----------CCcHHHHHHHHHHHHHHhCCCCChhhEEEcCChHHHHHHHHHHhc-
Confidence 4456666655554432 2223322 11345677777766 4588899999999999999999987
Q ss_pred hhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccC--CCCCcChhHHHhhccCCceEEEEeccccccccccC---h
Q psy15216 1477 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK--NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---I 1551 (2602)
Q Consensus 1477 ~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~--~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~---l 1551 (2602)
++||+|++++|.|+.+...+..+ |++++.++.. .++.+|+++|++++++++++|++++|+||||.+++ +
T Consensus 111 ---~~gd~vlv~~p~y~~~~~~~~~~---g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~s~~~~ 184 (384)
T PRK06348 111 ---DPGDEVIIHEPYFTPYKDQIEMV---GGKPIILETYEEDGFQINVKKLEALITSKTKAIILNSPNNPTGAVFSKETL 184 (384)
T ss_pred ---CCCCEEEEeCCCCcchHHHHHHc---CCEEEEecCCcCcCCcCCHHHHHHhhCcCccEEEEeCCCCCCCcCCCHHHH
Confidence 89999999999999988877766 8888888864 34569999999999999999999999999999998 6
Q ss_pred HHHHHHhhhcCCEEEEecccccCc---cccc---CCC-CCccEEEEccccccCCCc--eEEEEEecCCCCccccccccCC
Q psy15216 1552 LEIGELCRSKGVIFHCDAAQAVGK---IDIN---IQN-YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGG 1622 (2602)
Q Consensus 1552 ~~I~~ia~~~gi~vivD~a~~~g~---~~~~---l~~-~~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~~g~~ 1622 (2602)
++|.++|++||+++|+|++++... .... +.. .+..+++.||+|.+|++| +||+++++++++.+.....
T Consensus 185 ~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiG~~v~~~~~~~~~~~~~~--- 261 (384)
T PRK06348 185 EEIAKIAIEYDLFIISDEVYDGFSFYEDFVPMATLAGMPERTITFGSFSKDFAMTGWRIGYVIAPDYIIETAKIINE--- 261 (384)
T ss_pred HHHHHHHHHCCeEEEEecccccceeCCCccchhhcCCCcCcEEEEecchhccCCccccceeeecCHHHHHHHHHHHH---
Confidence 778888999999999999986321 1111 211 123577889999888777 8999998876655543221
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEe--cCCcH
Q psy15216 1623 HEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN--FIEGE 1700 (2602)
Q Consensus 1623 ~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~--~~~~~ 1700 (2602)
....+.+...+.++..++.......++.+..++++++++.+.|.. ++++.+..+... -...+.++ ..+..
T Consensus 262 ----~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~~~L~~-~~~~~~~~p~gg---~~~~~~~~~~~~~~~ 333 (384)
T PRK06348 262 ----GICFSAPTISQRAAIYALKHRDTIVPLIKEEFQKRLEYAYKRIES-IPNLSLHPPKGS---IYAFINIKKTGLSSV 333 (384)
T ss_pred ----hccCCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhc-CCCceeccCCee---EEEEEecccCCCCHH
Confidence 111234555555565666543444667777888888899999977 566655432111 11122233 23456
Q ss_pred HHHHhc---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1701 SLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1701 ~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
++...+ +||.+.+|..|... ..+++||+++ .+.++++.++++|++
T Consensus 334 ~l~~~l~~~~gv~v~pg~~f~~~-----------------~~~~iRi~~~--~~~~~l~~al~~l~~ 381 (384)
T PRK06348 334 EFCEKLLKEAHVLVIPGKAFGES-----------------GEGYIRLACT--VGIEVLEEAFNRIEK 381 (384)
T ss_pred HHHHHHHHhCCEEEcCchhhccC-----------------CCCeEEEEec--CCHHHHHHHHHHHHh
Confidence 666554 59999999877431 1278999996 478999999998875
|
|
| >PRK07683 aminotransferase A; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-20 Score=244.85 Aligned_cols=313 Identities=16% Similarity=0.187 Sum_probs=222.2
Q ss_pred CCCHHHHHHHHHHHhhh-cCCCCCCCcchhhhHHHHHHHHHHHHHHHh----CC--CCC-cEEEeCCHHHHHHHHHHhcc
Q psy15216 8 PIDPRVVDKMIPYLRVQ-FGNPASRNHIYGWTAEKAIEKARNEVAQLI----YA--DPR-EIIWTSGATESNNLAIKGAA 79 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~-~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~----g~--~~~-~Iv~t~g~T~al~~~~~~l~ 79 (2602)
++++.+.+++.+.+... ..++.. ....++|+.+++++ |. +++ +|++|+|+++|+.+++.++.
T Consensus 41 ~~~~~~~~a~~~~~~~~~~~Y~~~----------~g~~~lr~~ia~~l~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~ 110 (387)
T PRK07683 41 PTPSHVKEAAKRAITENYTSYTHN----------AGLLELRKAACNFVKDKYDLHYSPESEIIVTIGASEAIDIAFRTIL 110 (387)
T ss_pred CCCHHHHHHHHHHHhcCCCCCCCC----------CCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhC
Confidence 45678888888877642 112111 12355677777766 43 677 89999999999999999887
Q ss_pred cccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCC-CCccChHHHHhhccCCceEEEEecccCccccccc---H
Q psy15216 80 HFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---I 155 (2602)
Q Consensus 80 ~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~-~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~---l 155 (2602)
++||.|+++.|.|+.+..++..+ |++++.++.+. ++.+|++++++.++++++++++++|+||||.+++ +
T Consensus 111 ----~~gd~Vl~~~p~y~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~i~~p~NPtG~~~s~~~~ 183 (387)
T PRK07683 111 ----EPGTEVILPAPIYPGYEPIIRLC---GAKPVFIDTRSTGFRLTAEALENAITEKTRCVVLPYPSNPTGVTLSKEEL 183 (387)
T ss_pred ----CCCCEEEEcCCCccchHHHHHHc---CCEEEEeecCcccCCCCHHHHHHhcCcCceEEEEeCCCCCCCcCCCHHHH
Confidence 79999999999999987777665 99999998865 4567899999999999999999999999999988 6
Q ss_pred HHHHHHHHhcCCEEEEecccccccc---cccCCCC----CccEEEeccccccCCCC--cEEEEEecCCCCcccceecCCC
Q psy15216 156 LEIGELCRSKGVIFHCDAAQAVGKI---DINIQNY----KVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGG 226 (2602)
Q Consensus 156 ~~I~~la~~~g~~livD~a~a~g~~---~~dl~~~----~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g~~ 226 (2602)
++|+++|+++|+++|+|++++.... +..+..+ +..+++.|++|.+|.+| +||+++++++++.+.....
T Consensus 184 ~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~pGlRiG~i~~~~~l~~~~~~~~~--- 260 (387)
T PRK07683 184 QDIADVLKDKNIFVLSDEIYSELVYEQPHTSIAHFPEMREKTIVINGLSKSHSMTGWRIGFLFAPSYLAKHILKVHQ--- 260 (387)
T ss_pred HHHHHHHHHcCeEEEEecccccceeCCCcCChhhccCCcCCeEEEeeccccccCccceeEEEEcCHHHHHHHHHHHH---
Confidence 7788899999999999999874321 1122221 23588899999999888 8999999877776653220
Q ss_pred ccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc--cChh
Q psy15216 227 HEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF--IEGE 304 (2602)
Q Consensus 227 ~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~--~~~~ 304 (2602)
+....++.....++...|+....+.+..++++.+.++.+.+.|.+ .++.+..+.. ....+..++. .+..
T Consensus 261 ----~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~---~~~~~~~~~~~~~~~~ 331 (387)
T PRK07683 261 ----YNVTCASSISQYAALEALTAGKDDAKMMRHQYKKRRDYVYNRLIS--MGLDVEKPTG---AFYLFPSIGHFTMSSF 331 (387)
T ss_pred ----hccCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHH--cCCcccCCCe---eEEEEEecccCCCCHH
Confidence 111223334444444555432344667778888888899999877 2555443322 1222333332 3444
Q ss_pred HHHHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 305 SLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 305 ~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
++...+ +||.+.+|..|... ..+++||+++. +++++...+++|.+
T Consensus 332 ~~~~~ll~~~gI~v~pg~~f~~~-----------------~~~~~Ri~~~~--~~~~~~~al~~l~~ 379 (387)
T PRK07683 332 DFALDLVEEAGLAVVPGSAFSEY-----------------GEGYVRLSYAY--SIETLKEGLDRLEA 379 (387)
T ss_pred HHHHHHHHhCCEEEcCchhhCCC-----------------CCCeEEEEecC--CHHHHHHHHHHHHH
Confidence 555443 69999998876431 13799999985 68888888888885
|
|
| >PRK01688 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.6e-21 Score=245.46 Aligned_cols=281 Identities=17% Similarity=0.166 Sum_probs=204.1
Q ss_pred HHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCC-CEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCC
Q psy15216 1439 IEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRG-KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN 1517 (2602)
Q Consensus 1439 ~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~g-d~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~ 1517 (2602)
..++++++++++|+++++|++|+|+++++.+++.++. ++| |+|+++.|+|+.+...++.. |++++.++.+.+
T Consensus 59 ~~~l~~~~a~~~g~~~~~I~~~~Gs~e~i~~~~~~~~----~~g~~~vli~~P~y~~y~~~~~~~---G~~~~~v~~~~~ 131 (351)
T PRK01688 59 PKAVIENYAAYAGVKPEQVLVSRGADEGIELLIRAFC----EPGKDAILYCPPTYGMYSVSAETI---GVEIRTVPTLDN 131 (351)
T ss_pred hHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHhc----CCCCCEEEEcCCCHHHHHHHHHHc---CCEEEEeecCCC
Confidence 3688999999999999999999999999999999886 786 99999999998876655554 999999998878
Q ss_pred CCcChhHHHhhccCCceEEEEeccccccccccChHHHHHHhhh--cCCEEEEecccccCccc---cc-CCCCCccEEEEc
Q psy15216 1518 GLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRS--KGVIFHCDAAQAVGKID---IN-IQNYKVDLMSFS 1591 (2602)
Q Consensus 1518 ~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~~ia~~--~gi~vivD~a~~~g~~~---~~-l~~~~~D~~v~S 1591 (2602)
+.+|++++++++ +++++|++++|+||||.+++.++|.++++. .+.++|+|++|..-... .+ +...+.-+++.|
T Consensus 132 ~~~d~~~l~~~~-~~~~lv~l~nPnNPTG~~~~~~~l~~l~~~~~~~~~vivDEay~~f~~~~s~~~~~~~~~n~iv~rS 210 (351)
T PRK01688 132 WQLDLPAIADNL-DGVKVVYVCSPNNPTGNLINPQDLRTLLELTRGKAIVVADEAYIEFCPQASLAGWLAEYPHLVILRT 210 (351)
T ss_pred CCCCHHHHHHhc-cCCcEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchhhcCCCCChHHHHhhCCCEEEEec
Confidence 889999999988 689999999999999999997777666643 26889999997532211 11 122233477789
Q ss_pred cccccCCCc--eEEEEEecCCCCccccccccCCccccCCCCCcchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q psy15216 1592 AHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRL-ARIEMKEELKRILFLQKRLYNG 1668 (2602)
Q Consensus 1592 ~~K~~gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~-~~~~~~~~~~~~~~l~~~l~~~ 1668 (2602)
|+|.+|++| +||+++++++++.+..... +...+.....+..++|.. ....+.+.++++.+.++++.+.
T Consensus 211 fSK~~glaGlRiGy~i~~~~~i~~l~~~~~---------~~~v~~~~~~~a~~~L~~~~~~~~~~~~~~~~~~r~~l~~~ 281 (351)
T PRK01688 211 LSKAFALAGLRCGFTLANEEVINLLLKVIA---------PYPLSTPVADIAAQALSPQGIAAMRERVAEINANRQWLIAA 281 (351)
T ss_pred chHhhcCHHHHHhHHhCCHHHHHHHHhccC---------CCCCCHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 999999989 6999999887766654321 122333333333345542 1234666777778888999999
Q ss_pred HhhcCCcEEEeCCCCCCCCceEEEEEecCCcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEec
Q psy15216 1669 LMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTI 1746 (2602)
Q Consensus 1669 L~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~ 1746 (2602)
|.+ ++++....++. .+...+.+ .+..++...| +||.++.+..+.. . .+++|||+
T Consensus 282 L~~-~~~~~~~~ps~---~nfi~~~~--~~~~~l~~~L~~~gi~vr~~~~~~~-------------~-----~~~iRis~ 337 (351)
T PRK01688 282 LKE-IPCVEQVFDSE---TNYILARF--TASSAVFKSLWDQGIILRDQNKQPG-------------L-----SNCLRITI 337 (351)
T ss_pred HHh-CCCCCeECCCC---CcEEEEEc--CCHHHHHHHHHHCCeEEEECCCcCC-------------C-----CCeEEEeC
Confidence 987 66654222222 12222222 3456666666 8999986543311 1 27899999
Q ss_pred CCCCCHHHHHHHHHHHH
Q psy15216 1747 GRFTTEKEIDFTIKLLK 1763 (2602)
Q Consensus 1747 ~~~~t~edid~li~~L~ 1763 (2602)
+ +.+|+++++++|+
T Consensus 338 ~---~~~e~~~l~~al~ 351 (351)
T PRK01688 338 G---TREECQRVIDALR 351 (351)
T ss_pred C---CHHHHHHHHHhhC
Confidence 9 7899999999874
|
|
| >PRK06290 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-20 Score=243.26 Aligned_cols=310 Identities=15% Similarity=0.092 Sum_probs=218.1
Q ss_pred CCCHHHHHHHHHHHhh--hcCCCCCCCcchhhhHHHHHHHHHHHHHHHh----C---CCCC-cEEEeCCHHHHHHHHHHh
Q psy15216 8 PIDPRVVDKMIPYLRV--QFGNPASRNHIYGWTAEKAIEKARNEVAQLI----Y---ADPR-EIIWTSGATESNNLAIKG 77 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~--~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~----g---~~~~-~Iv~t~g~T~al~~~~~~ 77 (2602)
++++.+.+++.+.+.. ...+|.. ...++|+++|+++ | ++++ +|++|+|+++++..++.+
T Consensus 57 ~~~~~~~~~l~~~~~~~~~~~Y~~~-----------G~~~lr~aia~~~~~~~g~~~~~~~~~I~it~Gs~~al~~~~~~ 125 (410)
T PRK06290 57 MADESVVEVLCEEAKKPENRGYADN-----------GIQEFKEAAARYMEKVFGVKDIDPVTEVIHSIGSKPALAMLPSC 125 (410)
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCCC-----------CcHHHHHHHHHHHHHHcCCCcCCCcceEEEccCHHHHHHHHHHH
Confidence 4567777877776532 1122211 2355666677664 4 5565 799999999999999999
Q ss_pred cccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCC--CCccChHHHHhhccCCceEEEEecccCcccccccH
Q psy15216 78 AAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPI 155 (2602)
Q Consensus 78 l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l 155 (2602)
+. ++||.|+++.|.|+.+...++.. |++++.++.++ ++.+|++++++.+.+++++|++++||||||.+++.
T Consensus 126 ~~----~~gd~Vlv~~P~y~~~~~~~~~~---g~~v~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~nP~NPTG~v~s~ 198 (410)
T PRK06290 126 FI----NPGDVTLMTVPGYPVTGTHTKYY---GGEVYNLPLLEENNFLPDLDSIPKDIKEKAKLLYLNYPNNPTGAVATK 198 (410)
T ss_pred hC----CCCCEEEEeCCCCccHHHHHHHc---CCEEEEEecCCCcCCcCCHHHHHHhhcccceEEEEECCCCCCCcCCCH
Confidence 87 89999999999999987776655 99999999875 35679999999998899999999999999999994
Q ss_pred ---HHHHHHHHhcCCEEEEeccccccc---cccc---CCC-CCccEEEeccccccCCCC--cEEEEEecCCCCcccceec
Q psy15216 156 ---LEIGELCRSKGVIFHCDAAQAVGK---IDIN---IQN-YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIH 223 (2602)
Q Consensus 156 ---~~I~~la~~~g~~livD~a~a~g~---~~~d---l~~-~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~ 223 (2602)
++|.++|++||++||+|++|+... .+.. +.. .+.++++.|++|.+|++| +||+++++++++.+.....
T Consensus 199 e~l~~l~~la~~~~~~iI~DEaY~~~~~~~~~~s~~~~~~~~~~~I~i~SfSK~~g~~GlRiG~ii~~~~l~~~l~~~~~ 278 (410)
T PRK06290 199 EFYEEVVDFAKENNIIVVQDAAYAALTFDGKPLSFLSVPGAKEVGVEIHSLSKAYNMTGWRLAFVVGNELIVKAFATVKD 278 (410)
T ss_pred HHHHHHHHHHHHcCeEEEEecchhhceeCCCCcChhcCCCccccEEEEeechhhcCCchhheEeEEeCHHHHHHHHHHHh
Confidence 667788999999999999986421 1111 111 234688999999999888 8999998877766653321
Q ss_pred CCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc---
Q psy15216 224 GGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF--- 300 (2602)
Q Consensus 224 g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~--- 300 (2602)
. ...+.+.+...++..+++. ..+.++.++++.++++++.+.|.+ . |+.+..+... ...++.++.
T Consensus 279 ~-------~~~~~~~~~q~aa~~~l~~-~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~p~g~---f~l~v~lp~~~~ 345 (410)
T PRK06290 279 N-------NDSGQFIAIQKAGIYALDH-PEITEKIREKYSRRLDKLVKILNE-V-GFKAEMPGGT---FYLYVKAPKGTK 345 (410)
T ss_pred c-------cccCCcHHHHHHHHHHhhC-cHHHHHHHHHHHHHHHHHHHHHHh-C-CCeecCCCee---eEEEEECCCccc
Confidence 1 1112223334444455542 234677788888999999999987 3 6665533221 122234442
Q ss_pred -----cChhHHHHHh--C-CeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecC-CCCCHHHHHHHHHHHHhh
Q psy15216 301 -----IEGESLLMAI--K-DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIG-RFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 301 -----~~~~~~~~~L--~-gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~-~~~t~edid~li~~L~~~ 369 (2602)
.+..++.+.| + ++.+.+|..+ ++++||+++ ...++++.++++++|++.
T Consensus 346 ~~~~~~~~~~~~~~Ll~~~~v~~~p~~~~---------------------~~~lRi~~~~~~~~~~~~~~~~~~l~~~ 402 (410)
T PRK06290 346 SGIKFENAEEFSQYLIKEKLISTVPWDDA---------------------GHFLRFSVTFEAKDEEEEDRILEEIKRR 402 (410)
T ss_pred cCCCCCCHHHHHHHHHHhCCEEEECCccc---------------------cCeEEEEEEcccccccchhHHHHHHHHH
Confidence 1455677776 3 4555554322 268999996 455888999999999864
|
|
| >PRK05764 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.3e-20 Score=242.83 Aligned_cols=312 Identities=14% Similarity=0.122 Sum_probs=223.8
Q ss_pred CCCHHHHHHHHHHHhhc-cCCCCCccchhHHHHHHHHHHHHHHHHHHh------CCCCCcEEEeCCHHHHHHHHHHhhhh
Q psy15216 1404 PIDPRVVDKMIPYLRVQ-FGNPASRNHIYGWTAEKAIEKARNEVAQLI------YADPREIIWTSGATESNNLAIKGAAH 1476 (2602)
Q Consensus 1404 ~~~~~v~eal~~~l~~~-~~np~~~~~~~~~~~~~~~~~lr~~ia~~~------g~~~~~iv~t~gaT~al~~al~~l~~ 1476 (2602)
+.++.+.+++.+.+... ..++.. ....++|+.+++++ ++++++|++|+|+++|+..++.++.
T Consensus 44 ~~~~~~~~~~~~~~~~~~~~Y~~~----------~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~~~- 112 (393)
T PRK05764 44 DTPEHIKEAAIEALDDGKTKYTPA----------AGIPELREAIAAKLKRDNGLDYDPSQVIVTTGAKQALYNAFMALL- 112 (393)
T ss_pred CCCHHHHHHHHHHHhcCCCCcCCC----------CChHHHHHHHHHHHHHHhCCCCCHHHEEEeCCcHHHHHHHHHHhc-
Confidence 45678888888877542 112211 12466778888776 3577889999999999999999886
Q ss_pred hhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCC--CCCcChhHHHhhccCCceEEEEeccccccccccC---h
Q psy15216 1477 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---I 1551 (2602)
Q Consensus 1477 ~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~---l 1551 (2602)
++||+|++++|.|+.+....+.. |++++.++.++ ++.+|+++++++++++++++++++|+||||.++| +
T Consensus 113 ---~~gd~vl~~~p~y~~~~~~~~~~---g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~NPtG~~~~~~~~ 186 (393)
T PRK05764 113 ---DPGDEVIIPAPYWVSYPEMVKLA---GGVPVFVPTGEENGFKLTVEQLEAAITPKTKALILNSPSNPTGAVYSPEEL 186 (393)
T ss_pred ---CCCCEEEecCCCCcchHHHHHHc---CCEEEEEecCcccCCcCCHHHHHHhhCccceEEEEECCCCCCCcccCHHHH
Confidence 79999999999999887666554 99999999874 4568999999999999999999999999999987 7
Q ss_pred HHHHHHhhhcCCEEEEecccccCcc------cc-cC--CCCCccEEEEccccccCCCc--eEEEEEecCCCCcccccccc
Q psy15216 1552 LEIGELCRSKGVIFHCDAAQAVGKI------DI-NI--QNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHG 1620 (2602)
Q Consensus 1552 ~~I~~ia~~~gi~vivD~a~~~g~~------~~-~l--~~~~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~~g 1620 (2602)
++|+++|++||+++++|++|+.... ++ .+ ...+.++++.|++|.+|++| +||++.++++++.+.....
T Consensus 187 ~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~i~~~~~~~~~~~~~~~- 265 (393)
T PRK05764 187 EAIADVAVEHDIWVLSDEIYEKLVYDGAEFTSIASLSPELRDRTITVNGFSKAYAMTGWRLGYAAGPKELIKAMSKLQS- 265 (393)
T ss_pred HHHHHHHHHCCcEEEEeccccceeeCCCCcccHHHcCCCCcCCEEEEecCcccccCccceeEEEecCHHHHHHHHHHHh-
Confidence 7889999999999999999753211 11 11 12245788889999888778 8999988877666654321
Q ss_pred CCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecC-C-
Q psy15216 1621 GGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI-E- 1698 (2602)
Q Consensus 1621 ~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~-~- 1698 (2602)
.....++...+.++..++......+++.++++.++++.+.+.|.+ .+++.+..+... ....+.++.. .
T Consensus 266 ------~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~g~---~~~~~~~~~~~~~ 335 (393)
T PRK05764 266 ------HSTSNPTSIAQYAAVAALNGPQDEVEEMRQAFEERRDLMVDGLNE-IPGLECPKPEGA---FYVFPNVSKLLGK 335 (393)
T ss_pred ------hcccCCChHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhh-CCCCcccCCCcc---eEEEEeccccccc
Confidence 112233444444554555422345667778888888889999987 567766532111 1112222221 1
Q ss_pred ----cHHHHHhc---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1699 ----GESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1699 ----~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
..++...+ +||.+.+|..|... +++||+++. +.++++.++++|.+
T Consensus 336 ~~~~~~~~~~~l~~~~gi~v~~g~~f~~~-------------------~~vRis~~~--~~~~~~~~i~~l~~ 387 (393)
T PRK05764 336 SITDSLEFAEALLEEAGVAVVPGIAFGAP-------------------GYVRLSYAT--SLEDLEEGLERIER 387 (393)
T ss_pred ccCCHHHHHHHHHHhCCEEEccccccCCC-------------------CEEEEEecC--CHHHHHHHHHHHHH
Confidence 25555444 69999998876432 899999874 78999999999986
|
|
| >PRK07366 succinyldiaminopimelate transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.7e-20 Score=244.68 Aligned_cols=312 Identities=13% Similarity=0.127 Sum_probs=218.8
Q ss_pred CCCCHHHHHHHHHHHhhc--cCCCCCccchhHHHHHHHHHHHHHHHHHHh----C--CCCC-cEEEeCCHHHHHHHHHHh
Q psy15216 1403 TPIDPRVVDKMIPYLRVQ--FGNPASRNHIYGWTAEKAIEKARNEVAQLI----Y--ADPR-EIIWTSGATESNNLAIKG 1473 (2602)
Q Consensus 1403 ~~~~~~v~eal~~~l~~~--~~np~~~~~~~~~~~~~~~~~lr~~ia~~~----g--~~~~-~iv~t~gaT~al~~al~~ 1473 (2602)
.+.++.+.+++.+.+... ..++.. ....++|+++++++ | ++++ +|++|+|+++|+.+++.+
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~Y~~~----------~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~Gs~~al~~~~~~ 111 (388)
T PRK07366 42 LPAPAHALEAIAQSLHDPSTHGYLLF----------HGTLDFREAAAQWYEQRFGLAVDPETEVLPLIGSQEGTAHLPLA 111 (388)
T ss_pred CCCCHHHHHHHHHHHhCcccCCCCCC----------CCCHHHHHHHHHHHHHhhCCcCCCcCeEEECCCcHHHHHHHHHH
Confidence 455778888888776531 112211 12456778888877 4 5777 699999999999999998
Q ss_pred hhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCC--CCcChhHHHhhccCCceEEEEeccccccccccC-
Q psy15216 1474 AAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN--GLITLSQLEEKICSDTILVSVMLVNNEIGVIQP- 1550 (2602)
Q Consensus 1474 l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~--~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~- 1550 (2602)
+. ++||+|++++|.|+.+...++.. |++++.++.+++ +.+|++++++.+.++++++++++||||||.+++
T Consensus 112 l~----~~gd~Vlv~~P~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~p~NPTG~~~s~ 184 (388)
T PRK07366 112 VL----NPGDFALLLDPGYPSHAGGVYLA---GGQIYPMPLRAENDFLPVFADIPTEVLAQARLMVLSYPHNPTTAIAPL 184 (388)
T ss_pred hC----CCCCEEEEcCCCCcchHHHHHhc---CCEEEEEECCCccCCCCCHHHHHHhhcccceEEEEeCCCCCCCccCCH
Confidence 87 89999999999999988777666 999999998753 457889999888888999999999999999999
Q ss_pred --hHHHHHHhhhcCCEEEEecccccCc----c-ccc---CCCCC-ccEEEEccccccCCCc--eEEEEEecCCCCccccc
Q psy15216 1551 --ILEIGELCRSKGVIFHCDAAQAVGK----I-DIN---IQNYK-VDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQ 1617 (2602)
Q Consensus 1551 --l~~I~~ia~~~gi~vivD~a~~~g~----~-~~~---l~~~~-~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~ 1617 (2602)
+++|+++|++||+++|+|+++..-. . ... +.... .-+++.||+|.+|++| +||++.++++++.+...
T Consensus 185 ~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~v~~~~li~~l~~~ 264 (388)
T PRK07366 185 SFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEVEPPSILQADPEKSVSIEFFTLSKSYNMGGFRIGFAIGNAQLIQALRQV 264 (388)
T ss_pred HHHHHHHHHHHHcCeEEEEecchhhcccCCCCCCCChhhCCCCcccEEEEeecccccCCcchhheehcCCHHHHHHHHHH
Confidence 5577789999999999999975221 1 111 11111 2367789999988888 89999988777766543
Q ss_pred cccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecC
Q psy15216 1618 IHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI 1697 (2602)
Q Consensus 1618 ~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~ 1697 (2602)
.. ....++.+.....++ +++......+++.++.+++.++++.+.|.+ . ++....+. .+.++++...
T Consensus 265 ~~------~~~~~~~~~~~~~a~-~~l~~~~~~l~~~~~~~~~~r~~l~~~L~~-~-~~~~~~p~-----~g~f~~~~~~ 330 (388)
T PRK07366 265 KA------VVDFNQYRGILNGAI-AALTGPQATVQQTVQIFRQRRDAFINALHQ-I-GWPVPLPE-----ATMYVWAKLP 330 (388)
T ss_pred Hh------hcccCCCHHHHHHHH-HHHhCcHHHHHHHHHHHHHHHHHHHHHHHH-C-CCcccCCC-----eeEEEEEECC
Confidence 21 111122222233333 444322355778888889999999999987 3 54332221 1222333221
Q ss_pred -----CcHHHHHhc---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1698 -----EGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1698 -----~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
+..++...+ +||.+++|..|... ..+++||+++. +.++++.++++|++
T Consensus 331 ~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~-----------------~~~~iRi~~~~--~~~~l~~~l~rl~~ 386 (388)
T PRK07366 331 EPWQGNSVEFCTQLVAQTGVAASPGSGFGKS-----------------GEGYVRFALVH--DPDILEEAVERIAA 386 (388)
T ss_pred cccCCCHHHHHHHHHHhCCEEEeCchHhCcC-----------------CCCeEEEEecC--CHHHHHHHHHHHHH
Confidence 244555444 69999999877431 12789999973 68999999999875
|
|
| >PRK07337 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.5e-20 Score=243.03 Aligned_cols=314 Identities=14% Similarity=0.073 Sum_probs=219.9
Q ss_pred CCCCHHHHHHHHHHHhhc-cCCCCCccchhHHHHHHHHHHHHHHHHHHh----C--CCCCcEEEeCCHHHHHHHHHHhhh
Q psy15216 1403 TPIDPRVVDKMIPYLRVQ-FGNPASRNHIYGWTAEKAIEKARNEVAQLI----Y--ADPREIIWTSGATESNNLAIKGAA 1475 (2602)
Q Consensus 1403 ~~~~~~v~eal~~~l~~~-~~np~~~~~~~~~~~~~~~~~lr~~ia~~~----g--~~~~~iv~t~gaT~al~~al~~l~ 1475 (2602)
.+.++.+.+++.+.+... ..++.. ....++|+.+++++ | +++++|++|+|+++|+++++.++.
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~Y~~~----------~g~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~ 111 (388)
T PRK07337 42 FTAPEPVVEAAARALRRGVTQYTSA----------LGLAPLREAIAAWYARRFGLDVAPERIVVTAGASAALLLACLALV 111 (388)
T ss_pred CCCCHHHHHHHHHHHhcCCCCCCCC----------CCCHHHHHHHHHHHHHHhCCCCChHhEEEecCcHHHHHHHHHHhc
Confidence 345678888888877542 122211 12456777887776 4 478899999999999999999886
Q ss_pred hhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCC--CCCcChhHHHhhccCCceEEEEeccccccccccC---
Q psy15216 1476 HFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP--- 1550 (2602)
Q Consensus 1476 ~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~--- 1550 (2602)
++||+|++++|+|+++...+... |++++.++.+. ++.+|++++++.+++++++|++++|+||||.+++
T Consensus 112 ----~~gd~Vlv~~p~y~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~ 184 (388)
T PRK07337 112 ----ERGDEVLMPDPSYPCNRHFVAAA---EGRPVLVPSGPAERFQLTAADVEAAWGERTRGVLLASPSNPTGTSIAPDE 184 (388)
T ss_pred ----CCCCEEEEeCCCchhhHHHHHHc---CCEEEEeecCCccCCcCCHHHHHhhcCccceEEEEECCCCCCCcCcCHHH
Confidence 89999999999999987666554 88999999864 4679999999999999999999999999999998
Q ss_pred hHHHHHHhhhcCCEEEEeccccc-Ccc--cccCCCCCcc-EEEEccccccCCCc--eEEEEEecCCCCccccccccCCcc
Q psy15216 1551 ILEIGELCRSKGVIFHCDAAQAV-GKI--DINIQNYKVD-LMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHE 1624 (2602)
Q Consensus 1551 l~~I~~ia~~~gi~vivD~a~~~-g~~--~~~l~~~~~D-~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~~g~~~~ 1624 (2602)
+++|+++|++|++++|+|+++.. ... +.....++.+ +++.|+||.+|++| +||+++++++++.+......
T Consensus 185 ~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G~RiG~~~~~~~l~~~l~~~~~~---- 260 (388)
T PRK07337 185 LRRIVEAVRARGGFTIVDEIYQGLSYDAAPVSALSLGDDVITINSFSKYFNMTGWRLGWLVVPEALVGTFEKLAQN---- 260 (388)
T ss_pred HHHHHHHHHHCCCEEEEeccccccccCCCCcChhhccCCEEEEEechhhcCCchhheeeeecCHHHHHHHHHHHHH----
Confidence 67888899999999999998752 111 1122223334 45679999888778 89999988766665443211
Q ss_pred ccCCCCCcchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEE--ec-----
Q psy15216 1625 YGLRSGTLATHQIVGMGEAFRL-ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISF--NF----- 1696 (2602)
Q Consensus 1625 ~~~~~gt~~~~~~~al~~aL~~-~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~--~~----- 1696 (2602)
. ..+.+.+.+.++..++.. ....+.+.++++++.++++.+.|.+ . ++.+...+. .+.++++ +.
T Consensus 261 --~-~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~-~-~~~~~~~p~----~g~f~~~~~~~~~~~~ 331 (388)
T PRK07337 261 --L-FICASALAQHAALACFEPDTLAIYERRRAEFKRRRDFIVPALES-L-GFKVPVMPD----GAFYVYADCRGVAHPA 331 (388)
T ss_pred --h-ccCCChHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHh-c-CCccccCCC----eeEEEEEecccccCCC
Confidence 1 123344445444455541 1123566677888888889988877 3 443221111 1222333 21
Q ss_pred -CCcHHHHHhc---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1697 -IEGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1697 -~~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
.+..++...+ +||.+.+|..|... ...+++||+++. +.++++..+++|.+
T Consensus 332 ~~~~~~~~~~ll~~~gv~v~pg~~f~~~----------------~~~~~~Ri~~~~--~~~~l~~~l~rl~~ 385 (388)
T PRK07337 332 AGDSAALTQAMLHDAGVVLVPGRDFGPH----------------APRDYIRLSYAT--SMSRLEEAVARLGK 385 (388)
T ss_pred CCCHHHHHHHHHHhCCEEEeCchhhCCC----------------CCCCEEEEEecC--CHHHHHHHHHHHHH
Confidence 2445665543 79999999877532 013799999995 57889998888875
|
|
| >PRK15481 transcriptional regulatory protein PtsJ; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-20 Score=248.84 Aligned_cols=286 Identities=14% Similarity=0.114 Sum_probs=212.4
Q ss_pred HHHHHHHHHHHhCC---CCCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccC
Q psy15216 43 IEKARNEVAQLIYA---DPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK 119 (2602)
Q Consensus 43 ~~~~r~~lA~~~g~---~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~ 119 (2602)
..++|+.++++++. ++++|++|+|+++|+.+++.++. +|||.|++++|.|+.+...++.+ |++++.++++
T Consensus 123 ~~~lr~~ia~~~~~~~~~~~~Iiit~G~~~al~~~~~~l~----~pgd~Vlv~~P~y~~~~~~~~~~---g~~~~~v~~~ 195 (431)
T PRK15481 123 SPELHAWAARWLRDDCPVAFEIDLTSGAIDAIERLLCAHL----LPGDSVAVEDPCFLSSINMLRYA---GFSASPVSVD 195 (431)
T ss_pred CHHHHHHHHHHHhhccCCcCeEEEecCcHHHHHHHHHHhC----CCCCEEEEeCCCcHHHHHHHHHc---CCeEEeeccC
Confidence 35678888888763 34689999999999999999988 89999999999999988877766 9999999987
Q ss_pred CCCccChHHHHhhccCCceEEEEe-cccCcccccccHH---HHHHHHHhc-CCEEEEeccccccc----cc-ccCCCCCc
Q psy15216 120 NNGLITLSQLEEKICSDTILVSVM-LVNNEIGVIQPIL---EIGELCRSK-GVIFHCDAAQAVGK----ID-INIQNYKV 189 (2602)
Q Consensus 120 ~~~~ld~e~l~~~i~~~tklv~i~-~~~npTG~~~~l~---~I~~la~~~-g~~livD~a~a~g~----~~-~dl~~~~~ 189 (2602)
+++ +|++++++++++++++++++ +||||||.+++.+ +|.++|++| ++++|+|++|+.-. .+ +.. ..+.
T Consensus 196 ~~g-~~~~~l~~~~~~~~k~i~~~p~p~NPTG~~~s~~~~~~l~~la~~~~~~~ii~De~Y~~~~~~~~~~~~~~-~~~~ 273 (431)
T PRK15481 196 AEG-MQPEKLERALAQGARAVILTPRAHNPTGCSLSARRAAALRNLLARYPQVLVIIDDHFALLSSSPYHSVIPQ-TTQR 273 (431)
T ss_pred CCC-CCHHHHHHHHhcCCCEEEECCCCCCCCCccCCHHHHHHHHHHHHhcCCceEEecCchhhhccCCCCCCCcC-CCCC
Confidence 654 89999999998889988887 9999999999976 899999999 99999999975321 11 111 1223
Q ss_pred cEEEeccccccCCCC--cEEEEEecCCCCcccceecCCCccccccccCcchhHHHHHHHHHHH--HHHhHHHHHHHHHHH
Q psy15216 190 DLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRL--ARIEMKEELKRILFL 265 (2602)
Q Consensus 190 D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~--~~~~~~~~~~~~~~l 265 (2602)
.+++.||||.|| +| +||++.++++++.+..... ......+.+...++..+|+. ...++++.++.+++.
T Consensus 274 vi~~~SfSK~~~-~GlRiG~~i~~~~~~~~~~~~~~-------~~~~~~s~~~q~a~~~~l~~~~~~~~l~~~~~~~~~~ 345 (431)
T PRK15481 274 WALIRSVSKALG-PDLRLAFVASDSATSARLRLRLN-------SGTQWVSHLLQDLVYACLTDPEYQARLAQARLFYAQR 345 (431)
T ss_pred EEEEeeeccccC-CCceeEEEeCCHHHHHHHHHHHh-------ccccCCCHHHHHHHHHHHhCccHHHHHHHHHHHHHHH
Confidence 488889999988 68 8999998877766643221 01123455666666677762 234467788888999
Q ss_pred HHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc-cChhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCC
Q psy15216 266 QKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELA 342 (2602)
Q Consensus 266 ~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~ 342 (2602)
++.+.+.|.+ . ++.+..|. .+.++++.. .+..++...| +||.+.+|..|... . .
T Consensus 346 r~~~~~~L~~-~-~~~~~~p~-----gg~f~~~~l~~~~~~~~~~l~~~gV~v~pg~~f~~~--------------~--~ 402 (431)
T PRK15481 346 RQKLARALQQ-Y-GIAIPSPG-----DGLNLWLPLDTDSQATALTLAKSGWLVREGEAFGVS--------------A--P 402 (431)
T ss_pred HHHHHHHHHH-c-CCccccCC-----CeEEEEEECCCCHHHHHHHHHHCCcEEecCCccccC--------------C--C
Confidence 9999999977 2 55432221 223334332 2445666666 89999999877431 0 1
Q ss_pred CCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 343 HSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 343 ~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
.+++||+++.. ++++++.+++.|++.
T Consensus 403 ~~~iRis~~~~-~~~~i~~~~~~l~~~ 428 (431)
T PRK15481 403 SHGLRITLSTL-NDAEINRLAADLHQA 428 (431)
T ss_pred CCeEEEEcCCC-ChHHHHHHHHHHHHH
Confidence 36899999863 589999999999864
|
|
| >PRK07908 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.4e-20 Score=239.42 Aligned_cols=302 Identities=17% Similarity=0.151 Sum_probs=215.5
Q ss_pred CCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccC
Q psy15216 1402 TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKR 1481 (2602)
Q Consensus 1402 ~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~ 1481 (2602)
...+++.+++++.+.+.....+|.. ....++|+++++++++++++|++|+|+++++.+++. + ++
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~Y~~~----------~g~~~lr~aia~~~~~~~~~I~it~Ga~~al~~~~~-l-----~~ 96 (349)
T PRK07908 33 HDTPPEWLRERLAARLGDLAAYPST----------EDERRARAAVAARHGRTPDEVLLLAGAAEGFALLAR-L-----RP 96 (349)
T ss_pred CCCCCHHHHHHHHHHhhHhhcCCCc----------cchHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHh-c-----CC
Confidence 3567888999999887654445542 125679999999999999999999999999998887 3 46
Q ss_pred CCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccCCceEEEEeccccccccccChHHHHHHhhhc
Q psy15216 1482 GKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSK 1561 (2602)
Q Consensus 1482 gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~~ia~~~ 1561 (2602)
| .+++..|+|+.+.. .++..|++++.++.+.++.+|++.+ .++++++++++|+||||.++|.++|.++|++
T Consensus 97 ~-~viv~~P~y~~~~~---~~~~~G~~i~~v~~~~~~~~d~~~l----~~~~~~i~l~np~NPTG~~~~~~~l~~l~~~- 167 (349)
T PRK07908 97 R-RAAVVHPSFTEPEA---ALRAAGIPVHRVVLDPPFRLDPAAV----PDDADLVVIGNPTNPTSVLHPAEQLLALRRP- 167 (349)
T ss_pred C-eEEEeCCCChHHHH---HHHHcCCEEEeeccCcccCcChhHh----ccCCCEEEEcCCCCCCCCCcCHHHHHHHHhc-
Confidence 5 56667777666544 4444599999999887677888754 5678999999999999999999999999964
Q ss_pred CCEEEEeccccc--CcccccCCC--CCccEEEEccccccCCCc--eEEEEEecCCCCccccccccCCccccCCCCCcchh
Q psy15216 1562 GVIFHCDAAQAV--GKIDINIQN--YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATH 1635 (2602)
Q Consensus 1562 gi~vivD~a~~~--g~~~~~l~~--~~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~ 1635 (2602)
+.++|+|++|+. ...+.++.. .+..+++.|+||.+|++| +||+++++++++.+.+... ..+.+..
T Consensus 168 ~~~iIvDe~y~~~~~~~~~~l~~~~~~~~i~i~S~SK~~~l~GlRiG~~~~~~~~~~~~~~~~~---------~~~~~~~ 238 (349)
T PRK07908 168 GRILVVDEAFADAVPGEPESLAGDDLPGVLVLRSLTKTWSLAGLRVGYALGAPDVLARLTRGRA---------HWPVGTL 238 (349)
T ss_pred CCEEEEECcchhhccCCccccccccCCCEEEEeecccccCCccceeeeeecCHHHHHHHHhcCC---------CCCccHH
Confidence 778899999852 111223221 222356669999888888 6999998877766654321 1233344
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecCCcHHHHHhc--CCEEEc
Q psy15216 1636 QIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDIAVS 1712 (2602)
Q Consensus 1636 ~~~al~~aL~-~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~v~ 1712 (2602)
.+.++...+. .....+++.++++.++++++.+.|.+ . ++.+..++. ..++++...+...+...| +||.++
T Consensus 239 ~~~a~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~-~-~~~~~~p~~-----g~~~~~~~~~~~~~~~~l~~~gI~v~ 311 (349)
T PRK07908 239 QLEAIAACCAPRAVAEAAADAARLAADRAEMVAGLRA-V-GARVVDPAA-----APFVLVRVPDAELLRKRLRERGIAVR 311 (349)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHh-C-CcEeccCCC-----ceEEEEECCcHHHHHHHHHhCCEEEE
Confidence 4554444443 22244677888889999999999987 4 676654322 233444433445555555 799999
Q ss_pred cccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1713 SGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1713 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
+|..|... ..+++|||++ +.+++++++++|++
T Consensus 312 ~g~~f~~~-----------------~~~~vRis~~---~~~~~~~l~~al~~ 343 (349)
T PRK07908 312 RGDTFPGL-----------------DPDYLRLAVR---PRAEVPVLVQALAE 343 (349)
T ss_pred ECCCCCCC-----------------CCCeEEEEeC---CCccHHHHHHHHHH
Confidence 98876321 1279999996 77899999999986
|
|
| >PRK07682 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-20 Score=244.08 Aligned_cols=310 Identities=17% Similarity=0.146 Sum_probs=223.3
Q ss_pred CCCHHHHHHHHHHHhhc-cCCCCCccchhHHHHHHHHHHHHHHHHHHh----CC--CCC-cEEEeCCHHHHHHHHHHhhh
Q psy15216 1404 PIDPRVVDKMIPYLRVQ-FGNPASRNHIYGWTAEKAIEKARNEVAQLI----YA--DPR-EIIWTSGATESNNLAIKGAA 1475 (2602)
Q Consensus 1404 ~~~~~v~eal~~~l~~~-~~np~~~~~~~~~~~~~~~~~lr~~ia~~~----g~--~~~-~iv~t~gaT~al~~al~~l~ 1475 (2602)
+.+..+.+++.+.++.. ..++.. ....++|+++++++ |. +++ +|++|+|+++|+.+++.++.
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~Y~~~----------~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~l~ 102 (378)
T PRK07682 33 VTPWNVREASIRSLEQGYTSYTAN----------AGLLELRQEIAKYLKKRFAVSYDPNDEIIVTVGASQALDVAMRAII 102 (378)
T ss_pred CCCHHHHHHHHHHHhcCCCCCCCC----------CCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhC
Confidence 34556778877766531 222221 12456677777766 33 555 79999999999999999887
Q ss_pred hhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCC--CCCcChhHHHhhccCCceEEEEeccccccccccC---
Q psy15216 1476 HFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP--- 1550 (2602)
Q Consensus 1476 ~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~--- 1550 (2602)
++||+|++++|+|+.+....+.. |.+++.++.+. ++.+|++++++++.++++++++++|+||||.+++
T Consensus 103 ----~~gd~vl~~~p~y~~~~~~~~~~---g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~NPtG~~~s~~~ 175 (378)
T PRK07682 103 ----NPGDEVLIVEPSFVSYAPLVTLA---GGVPVPVATTLENEFKVQPAQIEAAITAKTKAILLCSPNNPTGAVLNKSE 175 (378)
T ss_pred ----CCCCEEEEeCCCchhhHHHHHHc---CCEEEEeecCCccCCCCCHHHHHhhcCcccEEEEEECCCCCcCcCcCHHH
Confidence 89999999999999877666555 88888888753 5679999999999999999999999999999998
Q ss_pred hHHHHHHhhhcCCEEEEecccccCcc-----c-ccCCC-CCccEEEEccccccCCCc--eEEEEEecCCCCccccccccC
Q psy15216 1551 ILEIGELCRSKGVIFHCDAAQAVGKI-----D-INIQN-YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGG 1621 (2602)
Q Consensus 1551 l~~I~~ia~~~gi~vivD~a~~~g~~-----~-~~l~~-~~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~~g~ 1621 (2602)
+++|+++|++|++++|+|++|+.... + ..+.. ....+++.||+|.+|++| +||+++++++++.+.....
T Consensus 176 ~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~~~~~~~~i~~l~~~~~-- 253 (378)
T PRK07682 176 LEEIAVIVEKHDLIVLSDEIYAELTYDEAYTSFASIKGMRERTILISGFSKGFAMTGWRLGFIAAPVYFSEAMLKIHQ-- 253 (378)
T ss_pred HHHHHHHHHHcCcEEEEehhhhhcccCCCCCChhhcccccCCEEEEecCcccccChhhhhhhhhcCHHHHHHHHHHHH--
Confidence 77899999999999999999763321 1 11111 134588889999988888 8999999887777654321
Q ss_pred CccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEe-----c
Q psy15216 1622 GHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN-----F 1696 (2602)
Q Consensus 1622 ~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~-----~ 1696 (2602)
+...+.+...+.++..+|+.....++..+++++++++++.+.|.+ . ++.+..+ ....+.+. .
T Consensus 254 -----~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~-~-~~~~~~p------~g~~~~~~~~~~~~ 320 (378)
T PRK07682 254 -----YSMMCAPTMAQFAALEALRAGNDDVIRMRDSYRKRRNFFVTSFNE-I-GLTCHVP------GGAFYAFPSISSTG 320 (378)
T ss_pred -----hhccCCCHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHH-C-CCccCCC------CeeEEEEEeccCCC
Confidence 111234444555555666532334677788889999999999987 3 5554322 22223322 2
Q ss_pred CCcHHHHHhc---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1697 IEGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1697 ~~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
.+..++...+ +||.+++|..|... ..+++|||++. +.+++++++++|++
T Consensus 321 ~~~~~~~~~ll~~~gv~v~pg~~f~~~-----------------~~~~iRis~~~--~~~~l~~~l~~l~~ 372 (378)
T PRK07682 321 LSSEEFAEQLLLEEKVAVVPGSVFGES-----------------GEGFIRCSYAT--SLEQLQEAMKRMKR 372 (378)
T ss_pred CCHHHHHHHHHHhCCEEEcCchhhCcC-----------------CCCeEEEEeCC--CHHHHHHHHHHHHH
Confidence 3456666554 69999999877432 13799999984 68999999999986
|
|
| >KOG0259|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.6e-20 Score=213.29 Aligned_cols=323 Identities=16% Similarity=0.144 Sum_probs=238.2
Q ss_pred CCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhC------CCCCcEEEeCCHHHHHHHHHHhhhh
Q psy15216 1403 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIY------ADPREIIWTSGATESNNLAIKGAAH 1476 (2602)
Q Consensus 1403 ~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g------~~~~~iv~t~gaT~al~~al~~l~~ 1476 (2602)
.+......+|+.+.++...+|... +......+|+++|++++ .++++|++|+|+++|+.+++.++.
T Consensus 77 ~~ts~~a~~Av~~al~Sgk~N~Ya--------ps~G~~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC~qAIe~~i~~LA- 147 (447)
T KOG0259|consen 77 FRTSQEAEQAVVDALRSGKGNGYA--------PSVGILPARRAVAEYLNRDLPNKLTADDVVLTSGCSQAIELAISSLA- 147 (447)
T ss_pred ccCCHHHHHHHHHHHhcCCCCCcC--------CccccHHHHHHHHHHhhcCCCCccCcCceEEeccchHHHHHHHHHhc-
Confidence 366778899999999875444322 22346678999999964 366789999999999999999998
Q ss_pred hhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccC--CCCCcChhHHHhhccCCceEEEEeccccccccccC---h
Q psy15216 1477 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK--NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---I 1551 (2602)
Q Consensus 1477 ~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~--~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~---l 1551 (2602)
+||..|++|.|+||-|.....+. |+++++.+.- .++.+|++.++++++++|.++++.+|+||.|.+++ |
T Consensus 148 ---~p~aNILlPrPGfp~Y~~~a~~~---~lEVR~ydlLPe~~weIDL~~veal~DENT~AivviNP~NPcGnVys~~HL 221 (447)
T KOG0259|consen 148 ---NPGANILLPRPGFPLYDTRAIYS---GLEVRYYDLLPEKDWEIDLDGVEALADENTVAIVVINPNNPCGNVYSEDHL 221 (447)
T ss_pred ---CCCCceecCCCCCchHHHhhhhc---CceeEeecccCcccceechHHHHHhhccCeeEEEEeCCCCCCcccccHHHH
Confidence 89999999999999988766665 9999999864 47889999999999999999999999999999998 8
Q ss_pred HHHHHHhhhcCCEEEEecccc---cCcccc-cCCC---CCccEEEEcccc-ccCCCc--eEEEEEecCCCCccccccc-c
Q psy15216 1552 LEIGELCRSKGVIFHCDAAQA---VGKIDI-NIQN---YKVDLMSFSAHK-IYGPKG--IGALYIRRNPRTRIEAQIH-G 1620 (2602)
Q Consensus 1552 ~~I~~ia~~~gi~vivD~a~~---~g~~~~-~l~~---~~~D~~v~S~~K-~~gp~G--~G~l~~~~~~~~~l~~~~~-g 1620 (2602)
++|+++|+++|+++|.|+.+. +|.-++ ++.. .-+-+.+.+.+| |.-| | +||+++++.. ..++.... .
T Consensus 222 ~kiae~A~klgi~vIaDEVY~~~vfg~~pfvpmg~fssiVPVitlggisKrW~VP-GWRlGWi~~hD~~-gvf~~~~~~q 299 (447)
T KOG0259|consen 222 KKIAETAKKLGIMVIADEVYGHTVFGDKPFVPMGKFSSIVPVITLGGISKRWIVP-GWRLGWIALHDPR-GVFRDTKVVQ 299 (447)
T ss_pred HHHHHHHHHhCCeEEehhhcceeecCCCCccchhhccccCceEeecccccccccC-CceeeeEEEeccc-ccccchHHHH
Confidence 999999999999999999974 232222 2222 224456668999 6643 4 9999998641 11111000 0
Q ss_pred CCccccCCCCCcchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEe---c
Q psy15216 1621 GGHEYGLRSGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN---F 1696 (2602)
Q Consensus 1621 ~~~~~~~~~gt~~~~~~~al~~aL~-~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~---~ 1696 (2602)
+....--....|+..-+.|+..-|. --++.++....-.+..++..+++|.+ +|++.++..|+.....++.+.+. .
T Consensus 300 ~~~~~~~~~~~p~TiiQ~AlP~IL~kTp~efF~k~~~~lk~na~l~y~~Lk~-IP~l~cp~kPeg~mylmv~l~~s~~~~ 378 (447)
T KOG0259|consen 300 GIKNFLDIIPGPATIIQGALPDILEKTPEEFFDKKLSFLKSNADLCYSRLKD-IPCLTCPVKPEGCMYLMVKLNLSLFPD 378 (447)
T ss_pred HHHHHHhccCCccHhHHHHhHHHHHhChHHHHHHHHHHHHhhHHHHHHHHhc-CCCcccCcCCCcceEEEeccchhhhcc
Confidence 0000001123466667777777776 34456788888899999999999998 99998765555432222222221 1
Q ss_pred -CCcHHHHHhc---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1697 -IEGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1697 -~~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
.+..+|..+| +.+.+-||..++.+ +|+|++++. ..+.++.++++|++
T Consensus 379 ~~dD~dFc~kL~~Eesv~~LPG~af~~~-------------------nw~Ri~i~~--~~~~leea~~Rik~ 429 (447)
T KOG0259|consen 379 IEDDVDFCQKLAREESVICLPGQAFGLK-------------------NWLRIVITV--EEEMLEEAFSRIKE 429 (447)
T ss_pred ccccHHHHHHHhhhcceEEeccccccCC-------------------CeEEEEEcc--ChHHHHHHHHHHHH
Confidence 2445677777 68889999988765 999999985 55889999999997
|
|
| >PRK00451 glycine dehydrogenase subunit 1; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.7e-20 Score=245.69 Aligned_cols=303 Identities=17% Similarity=0.196 Sum_probs=224.1
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHHH-HhCCcEEEE
Q psy15216 1433 WTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDGFRVTY 1511 (2602)
Q Consensus 1433 ~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~-~~~G~~v~~ 1511 (2602)
....+...+.++++++++|++++++++|+|+|+++..+++++. +.+||+|++++++|+++...+..+ ...|++++.
T Consensus 108 ~g~~~~~~e~~~~la~l~g~~~~~v~~~~g~t~~~~~~~~a~~---~~~g~~Vlv~~~~~~~~~~~~~~~~~~~G~~~~~ 184 (447)
T PRK00451 108 QGTLQAIFEYQTMICELTGMDVANASMYDGATALAEAALMAVR---ITKRKKVLVSGAVHPEYREVLKTYLKGQGIEVVE 184 (447)
T ss_pred hHHHHHHHHHHHHHHHHhCCCcceEEecCcHHHHHHHHHHHHH---hcCCCEEEEeCccCHHHHHHHHHHHHhCCcEEEE
Confidence 3355667778889999999988899999999999999988874 368999999999999999888764 445999999
Q ss_pred eccCCCCCcChhHHHhhccCCceEEEEeccccccccccChHHHHHHhhhcCCEEEE--ecccccCcccccCCCCCccEEE
Q psy15216 1512 LKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHC--DAAQAVGKIDINIQNYKVDLMS 1589 (2602)
Q Consensus 1512 v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~~ia~~~gi~viv--D~a~~~g~~~~~l~~~~~D~~v 1589 (2602)
++.+++ .+|+++++++++++|++|++++| |+||.+.|+++|.++|+++|+++++ |.. +.|.... ..++++|+++
T Consensus 185 v~~~~~-~~d~~~l~~~i~~~t~~v~l~~p-n~tG~v~~l~~I~~~a~~~~~~~iv~~d~~-~~g~~~~-~~~~~~D~~~ 260 (447)
T PRK00451 185 VPYEDG-VTDLEALEAAVDDDTAAVVVQYP-NFFGVIEDLEEIAEIAHAGGALFIVGVDPV-SLGLLKP-PGEYGADIVV 260 (447)
T ss_pred ecCCCC-CCCHHHHHHhcCCCeEEEEEECC-CCCCeeCCHHHHHHHHHHCCCEEEEEcChH-HhccCCC-cccCCCCEEE
Confidence 999887 89999999999999999999998 8999999999999999999999998 544 4454432 3567899999
Q ss_pred Eccccc-----cCCCceEEEEEecCCCCccccccccCCc-----------------cccCCCCCcchh---HH--HHHHH
Q psy15216 1590 FSAHKI-----YGPKGIGALYIRRNPRTRIEAQIHGGGH-----------------EYGLRSGTLATH---QI--VGMGE 1642 (2602)
Q Consensus 1590 ~S~~K~-----~gp~G~G~l~~~~~~~~~l~~~~~g~~~-----------------~~~~~~gt~~~~---~~--~al~~ 1642 (2602)
+|+||+ +|.+|+||+++++++++.+.+...|+.. ..++..++.++. .+ .+...
T Consensus 261 ~s~~k~~~~~~~~Gpg~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aaa~ 340 (447)
T PRK00451 261 GEGQPLGIPLSFGGPYLGFFATRKKLVRQMPGRLVGETVDADGKRGFVLTLQAREQHIRREKATSNICTNQALNALAAAI 340 (447)
T ss_pred ECCCcCCCCCCCCCCCchHHHhhHHHHhhCCCCEeeeecccCCCeeeEeeccccccccccccccccccccHHHHHHHHHH
Confidence 988884 4444799999998887776554444321 012333343332 12 22223
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecCCcHHHHHhc--CCEEEc-cccccC
Q psy15216 1643 AFR-LARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDIAVS-SGSACT 1718 (2602)
Q Consensus 1643 aL~-~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~v~-~g~~~~ 1718 (2602)
+++ +...+++++.+++.+++++++++|.+ ++++.+.. .. ......+.++ .+..++...| ++|... ++..+.
T Consensus 341 ~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~--~~-~~~~~~v~~~-~~~~~~~~~L~~~gi~~~~~~~~~~ 415 (447)
T PRK00451 341 YMSLLGPEGLRELAEQNHQKAHYLAERLAE-IGGVELFD--GP-FFNEFVVRLP-KPAEEVNEALLEKGILGGYDLGRYY 415 (447)
T ss_pred HHHHHCHHHHHHHHHHHHHHHHHHHHHHhh-cCCEEecC--CC-eEEEEEEecC-CCHHHHHHHHHhcCCCCCccccccc
Confidence 455 34567899999999999999999987 67887752 11 1111223332 3456777776 555421 111111
Q ss_pred CCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1719 SASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1719 ~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
+. . .+++|+|++.++|++++++++++|++
T Consensus 416 ~~------------~-----~~~~rvs~~~~~t~e~i~~l~~~L~~ 444 (447)
T PRK00451 416 PE------------L-----GNHLLVCVTEKRTKEDIDALVAALGE 444 (447)
T ss_pred CC------------c-----CCEEEEecCCCCCHHHHHHHHHHHHH
Confidence 10 1 26899999999999999999999986
|
|
| >PRK03317 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.5e-20 Score=241.23 Aligned_cols=302 Identities=14% Similarity=0.103 Sum_probs=219.3
Q ss_pred CCCHHHHHHHHHHHhh----hcCCCCCCCcchhhhHHHHHHHHHHHHHHHh------CCCCCcEEEeCCHHHHHHHHHHh
Q psy15216 8 PIDPRVVDKMIPYLRV----QFGNPASRNHIYGWTAEKAIEKARNEVAQLI------YADPREIIWTSGATESNNLAIKG 77 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~----~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~------g~~~~~Iv~t~g~T~al~~~~~~ 77 (2602)
++|+.+.+++.+.+.. ...+|.. ...++|+.+++++ ++++++|++|+|+++++.+++.+
T Consensus 39 ~~~~~~~~al~~~l~~~~~~~~~Y~~~-----------g~~~lr~aia~~~~~~~~~~~~~~~I~it~G~~~~l~~~~~~ 107 (368)
T PRK03317 39 PPSPALVADIAEAVAEAAAGLNRYPDR-----------DAVALRADLAAYLTAQTGVGLTVENVWAANGSNEILQQLLQA 107 (368)
T ss_pred CCCHHHHHHHHHHHhhhhhhhccCCCC-----------chHHHHHHHHHHhhhhccCCCChhhEEECCCHHHHHHHHHHH
Confidence 6888899999887653 2223322 2356777777777 46788999999999999999999
Q ss_pred cccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhcc-CCceEEEEecccCcccccccHH
Q psy15216 78 AAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKIC-SDTILVSVMLVNNEIGVIQPIL 156 (2602)
Q Consensus 78 l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~-~~tklv~i~~~~npTG~~~~l~ 156 (2602)
+. ++||.|+++.|.|+.+...+... |.+++.++.++++.+|++++++++. ++++++++++|+||||.+++.+
T Consensus 108 ~~----~~gd~v~v~~P~y~~~~~~~~~~---g~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~i~l~~p~NPtG~~~~~~ 180 (368)
T PRK03317 108 FG----GPGRTALGFVPSYSMHPIIARGT---HTEWVEGPRAADFTLDVDAAVAAIAEHRPDVVFLTSPNNPTGTALPLD 180 (368)
T ss_pred hc----CCCCEEEEeCCChHHHHHHHHhc---CCeeEEcccCCCCCCCHHHHHHHHhccCCCEEEEeCCCCCCCCCCCHH
Confidence 98 89999999999999987766544 8888888877677899999999986 5789999999999999999999
Q ss_pred HHHHHHHhcCCEEEEeccccccc---cc--ccC-CCCCccEEEeccccccCCCC--cEEEEEecCCCCcccceecCCCcc
Q psy15216 157 EIGELCRSKGVIFHCDAAQAVGK---ID--INI-QNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHE 228 (2602)
Q Consensus 157 ~I~~la~~~g~~livD~a~a~g~---~~--~dl-~~~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g~~~~ 228 (2602)
++.++++..++++|+|++|+.-. .+ ..+ ...+..+++.||+|.+|.+| +||+++++++++.+.....
T Consensus 181 ~l~~l~~~~~~~lI~DE~y~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~~~~~~~~~~l~~~~~----- 255 (368)
T PRK03317 181 DVEAILDAAPGIVVVDEAYAEFRRSGTPSALTLLPEYPRLVVSRTMSKAFAFAGGRLGYLAAAPAVVDALRLVRL----- 255 (368)
T ss_pred HHHHHHHHCCceEEEeCCchhhcccCCcCHHHHHHhCCCEEEEEechhhhccchhhhhhhhCCHHHHHHHHhcCC-----
Confidence 99999999899999999986321 11 111 11122367779999988778 7999999887776653221
Q ss_pred ccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcccChhHHHH
Q psy15216 229 YGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLM 308 (2602)
Q Consensus 229 ~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (2602)
....+.....++.++|+... .+.+..+++.+.++++.+.|.. .|+.+..+.. . +.++....+...+.+
T Consensus 256 ----~~~~s~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~l~~~L~~--~g~~~~~~~~----~-~~~~~~~~~~~~~~~ 323 (368)
T PRK03317 256 ----PYHLSAVTQAAARAALRHAD-ELLASVAALRAERDRVVAWLRE--LGLRVAPSDA----N-FVLFGRFADRHAVWQ 323 (368)
T ss_pred ----CCCCCHHHHHHHHHHhhCHH-HHHHHHHHHHHHHHHHHHHHHH--CCCEeCCCCC----c-EEEEeccCCHHHHHH
Confidence 22344555555666666322 2344556677778888888876 3666553322 1 112212234556666
Q ss_pred Hh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 309 AI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 309 ~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
.| +||.+++. .. .+++||+++ +.+++++++++|++.
T Consensus 324 ~l~~~Gv~v~~~---~~-------------------~~~iRi~~~---~~~~~~~~~~~l~~~ 361 (368)
T PRK03317 324 GLLDRGVLIRDV---GI-------------------PGWLRVTIG---TPEENDAFLAALAEV 361 (368)
T ss_pred HHHHCCEEEEeC---CC-------------------CCeEEEecC---CHHHHHHHHHHHHHH
Confidence 65 79998742 11 278999987 789999999999864
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.86 E-value=4e-20 Score=252.22 Aligned_cols=304 Identities=13% Similarity=0.108 Sum_probs=228.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHH----HHHHHHHHhhhhhhccCCC----EEEEcCCCCcchHHHHHHH
Q psy15216 1431 YGWTAEKAIEKARNEVAQLIYADPREIIWTSGAT----ESNNLAIKGAAHFYKKRGK----HIITVQTEHKSVLDSIRKL 1502 (2602)
Q Consensus 1431 ~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT----~al~~al~~l~~~~~~~gd----~Vlv~~~~~~s~~~~~~~~ 1502 (2602)
...+..+.+.++|+++++++|+ ++|+|++|+| ++++++++++. -.+|| +|+++..+|+++..++...
T Consensus 562 ~~~g~~~~~~~~r~~la~i~g~--~~v~f~pnaga~ge~a~~~vi~~~~---~~~Gd~~r~~vli~~~aH~sn~a~a~~~ 636 (993)
T PLN02414 562 QAQGYQEMFEDLGDLLCEITGF--DSFSLQPNAGAAGEYAGLMVIRAYH---LSRGDHHRNVCIIPVSAHGTNPASAAMC 636 (993)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC--CeEEEcCCCcHHHHHHHHHHHHHHH---hccCCCCCCEEEeCCCcCccCHHHHHHC
Confidence 3456678899999999999998 6899999999 99999999996 13387 9999999999999888775
Q ss_pred HhCCcEEEEeccCCCCCcChhHHHhhccC---CceEEEEeccccccccccChHHHHHHhhhcCCEEEEecccccCc-ccc
Q psy15216 1503 ENDGFRVTYLKPKNNGLITLSQLEEKICS---DTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGK-IDI 1578 (2602)
Q Consensus 1503 ~~~G~~v~~v~~~~~~~id~d~l~~~i~~---~t~lv~l~~~~n~tG~~~~l~~I~~ia~~~gi~vivD~a~~~g~-~~~ 1578 (2602)
|+++++++.+.+|.+|+++|++++++ +|++|+++||||.+|...|+++|+++||++|+++++|++|..+. ...
T Consensus 637 ---G~~vv~v~~d~~G~vDle~L~~~i~~~~~~ta~V~vt~pSn~gg~e~~I~eI~~iah~~Galv~vDgAq~~a~~~l~ 713 (993)
T PLN02414 637 ---GMKIVVVGTDAKGNINIEELRKAAEAHKDNLAALMVTYPSTHGVYEEGIDEICDIIHDNGGQVYMDGANMNAQVGLT 713 (993)
T ss_pred ---CCEEEEeccCCCCCcCHHHHHHHHhccCCCeEEEEEECCCccccccchHHHHHHHHHHcCCEEEEEecCHHhccCcC
Confidence 99999999998999999999999984 78999999999999999999999999999999999999998887 444
Q ss_pred cCCCCCccEEEEcccc-ccCCC-----ceEEEEEecCCCCccccccccCCc--cccCC---CCCcchhHH---HHHHHHH
Q psy15216 1579 NIQNYKVDLMSFSAHK-IYGPK-----GIGALYIRRNPRTRIEAQIHGGGH--EYGLR---SGTLATHQI---VGMGEAF 1644 (2602)
Q Consensus 1579 ~l~~~~~D~~v~S~~K-~~gp~-----G~G~l~~~~~~~~~l~~~~~g~~~--~~~~~---~gt~~~~~~---~al~~aL 1644 (2602)
+..++++|++++|.|| +++|. |+|++++++++...+.....+-.. ..++. .||.+...+ ..+..|+
T Consensus 714 ~p~~~GaD~~~~s~HK~f~~P~G~GGPg~G~l~~~~~L~p~lPg~~v~~~~~~~~r~~~s~iGt~~~a~~g~al~l~~A~ 793 (993)
T PLN02414 714 SPGFIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVPTGGIPRPEKTQPLGTISAAPWGSALILPISY 793 (993)
T ss_pred CccccCCCEEEecCCccCCcCcccCCCCeeeEEEchhhcccCCCCccccCCCcccccCCCCcCCccchhhhhHHHHHHHH
Confidence 5668999999999999 66555 499999998665555432211100 11122 356443222 4444444
Q ss_pred HH----HHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEe------cCCcHHHHHhc--CCEEEc
Q psy15216 1645 RL----ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN------FIEGESLLMAI--KDIAVS 1712 (2602)
Q Consensus 1645 ~~----~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~------~~~~~~~~~~L--~gI~v~ 1712 (2602)
.+ ..+++.+..++...++.|++++|.+ ..++...++... ..+-..+.++ +.+..++..+| +||...
T Consensus 794 ~yi~~lG~~Gl~~~a~~a~~nAnYl~~rL~~-~~~~~~~~~~~~-~~hEfv~~~~~l~~~~g~~~~di~krL~d~Gihap 871 (993)
T PLN02414 794 TYIAMMGSEGLTDASKIAILNANYMAKRLEG-HYPVLFRGKNGT-CAHEFIIDLRPFKNTAGIEPEDVAKRLMDYGFHAP 871 (993)
T ss_pred HHHHHHCHhHHHHHHHHHHHHHHHHHHHHHh-hCCccccCCCCC-eeeeEEEeccccccccCCCHHHHHHHHHHcCcEEe
Confidence 43 3356777788999999999999987 445444433221 1122223333 13346677776 666543
Q ss_pred cccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1713 SGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1713 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
. ..+ + ..+.+|++++-+++.+|+|+++++|..
T Consensus 872 t-~~~-p------------------v~~~lmiepTE~~skeelDrf~~al~~ 903 (993)
T PLN02414 872 T-MSW-P------------------VPGTLMIEPTESESKAELDRFCDALIS 903 (993)
T ss_pred e-ecc-c------------------cCCEEEEEeeeeCCHHHHHHHHHHHHH
Confidence 2 111 1 137899999999999999999999976
|
|
| >PRK09082 methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.2e-20 Score=242.87 Aligned_cols=319 Identities=14% Similarity=0.096 Sum_probs=228.2
Q ss_pred CCCHHHHHHHHHHHhhh-cCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCC--CC-cEEEeCCHHHHHHHHHHhcccccc
Q psy15216 8 PIDPRVVDKMIPYLRVQ-FGNPASRNHIYGWTAEKAIEKARNEVAQLIYAD--PR-EIIWTSGATESNNLAIKGAAHFYK 83 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~-~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~--~~-~Iv~t~g~T~al~~~~~~l~~~~~ 83 (2602)
++++.+.+++.+.+... ..++ .......+.+.+.+++.+++|.+ ++ +|++|+|+++|+.+++.++.
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~Y~------~~~G~~~lr~~~a~~l~~~~~~~~~~~~~i~~t~G~~~al~~~~~~~~---- 112 (386)
T PRK09082 43 DGPPYLVEALAYAMAAGHNQYP------PMTGVAALREAIAAKTARLYGRQYDADSEITVTAGATEALFAAILALV---- 112 (386)
T ss_pred CCCHHHHHHHHHHHHcCCCCCC------CCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCHHHHHHHHHHHHc----
Confidence 45678888888876532 1121 12223445666777777777873 33 79999999999999999887
Q ss_pred cCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCC-CCccChHHHHhhccCCceEEEEecccCccccccc---HHHHH
Q psy15216 84 KRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIG 159 (2602)
Q Consensus 84 ~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~-~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~---l~~I~ 159 (2602)
++||+|+++.|.|+++...++.+ |++++.++.+. ++.+|+++++++++++++++++++|+||||.+++ +++|.
T Consensus 113 ~~gd~Vli~~p~y~~~~~~~~~~---g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~i~ 189 (386)
T PRK09082 113 RPGDEVIVFDPSYDSYAPAIELA---GGRAVRVALQPPDFRVDWQRFAAAISPRTRLIILNTPHNPSGTVWSAADMRALW 189 (386)
T ss_pred CCCCEEEEeCCCchhhHHHHHHc---CCEEEEEecCcccccCCHHHHHHhcCccceEEEEeCCCCCCCcCCCHHHHHHHH
Confidence 79999999999999988877765 99999999864 6789999999999999999999999999999876 66789
Q ss_pred HHHHhcCCEEEEecccccccc----cc---cCCC-CCccEEEeccccccCCCC--cEEEEEecCCCCcccceecCCCccc
Q psy15216 160 ELCRSKGVIFHCDAAQAVGKI----DI---NIQN-YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEY 229 (2602)
Q Consensus 160 ~la~~~g~~livD~a~a~g~~----~~---dl~~-~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~ 229 (2602)
++|++||+++|+|++|+.... .. .+.. .+..+++.|++|.+|.+| +||+++++++++.+.....
T Consensus 190 ~~a~~~~i~li~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~iv~~~~l~~~~~~~~~------ 263 (386)
T PRK09082 190 QLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPELRERAFVVSSFGKTYHVTGWKVGYCVAPAALSAEFRKVHQ------ 263 (386)
T ss_pred HHHHHCCEEEEEehhhhhhccCCCCCCChhhCcCccCcEEEEeechhhccchhhhhhhhhCCHHHHHHHHHHHh------
Confidence 999999999999999853211 11 1111 234588889999998888 8999999887776654321
Q ss_pred cccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEc---ccChhHH
Q psy15216 230 GLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN---FIEGESL 306 (2602)
Q Consensus 230 ~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~---~~~~~~~ 306 (2602)
....+++.+...++...++....+.++.+..++++++.+.+.|.+ .++.+..+.. ....++.++ ..+..++
T Consensus 264 -~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~--~~~~~~~~~g---~~~~~~~~~~~~~~~~~~~ 337 (386)
T PRK09082 264 -YNTFTVNTPAQLALADYLRAEPEHYLELPAFYQAKRDRFRAALAN--SRFKLLPCEG---TYFQLVDYSAISDLDDVEF 337 (386)
T ss_pred -hhcCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHh--CCCcccCCCe---eEEEEEeccccCCCCHHHH
Confidence 112234555555554555422345677778888899999999977 4665543321 122333443 2356667
Q ss_pred HHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 307 LMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 307 ~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
...| +||.+.+|..|... ....+++|++++. ++++++..+++|++
T Consensus 338 ~~~l~~~~~v~v~pg~~f~~~---------------~~~~~~~Ri~~~~--~~~~l~~~~~rl~~ 385 (386)
T PRK09082 338 CQWLTREHGVAAIPLSVFYAD---------------PFPHRLVRLCFAK--QEETLDAAAERLCQ 385 (386)
T ss_pred HHHHHHhCCEEEeCcHHhCCC---------------CCCCCEEEEEecC--CHHHHHHHHHHHhh
Confidence 6654 59999999766421 0123789999985 68889999988873
|
|
| >PRK09147 succinyldiaminopimelate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.4e-20 Score=242.26 Aligned_cols=314 Identities=12% Similarity=0.087 Sum_probs=218.0
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHh----C---CCCC-cEEEeCCHHHHHHHHHHhhh
Q psy15216 1404 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI----Y---ADPR-EIIWTSGATESNNLAIKGAA 1475 (2602)
Q Consensus 1404 ~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~----g---~~~~-~iv~t~gaT~al~~al~~l~ 1475 (2602)
++++.+.+++.+.+.....++... ...++|+.+++++ | ++++ +|++|+|+++|+..++.++.
T Consensus 42 ~~~~~~~~~~~~~~~~~~~Y~~~~----------G~~~lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~ 111 (396)
T PRK09147 42 PTPAFIKDALAANLDGLASYPTTA----------GLPALREAIAAWLERRYGLPALDPATQVLPVNGSREALFAFAQTVI 111 (396)
T ss_pred CCCHHHHHHHHHHhhhhcCCCCCC----------CCHHHHHHHHHHHHHHhCCCcCCccceEEECCChHHHHHHHHHHHc
Confidence 456778888887765544444331 1345666666654 6 5564 89999999999999999987
Q ss_pred hhhccC---CCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCC--CCCcChhHHHhhccCCceEEEEeccccccccccC
Q psy15216 1476 HFYKKR---GKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP 1550 (2602)
Q Consensus 1476 ~~~~~~---gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~ 1550 (2602)
++ ||.|++++|.|+.+......+ |++++.+|.++ ++.+|++++++.+.++++++++++|+||||.+++
T Consensus 112 ----~~~~~gd~vlv~~P~y~~~~~~~~~~---g~~~~~vp~~~~~~~~~d~~~l~~~~~~~~k~i~l~nP~NPTG~~~s 184 (396)
T PRK09147 112 ----DRDGPGPLVVCPNPFYQIYEGAALLA---GAEPYFLNCDPANNFAPDFDAVPAEVWARTQLLFVCSPGNPTGAVLP 184 (396)
T ss_pred ----CCCCCCCEEEEcCCCccchHHHHHhc---CCEEEEeccCccccCccCHHHHHHHHhhccEEEEEcCCCCCcCccCC
Confidence 78 899999999999987776665 99999999864 3569999999988889999999999999999998
Q ss_pred ---hHHHHHHhhhcCCEEEEecccccCc-----cccc-C---C-----CCCccEEEEccccccCCCc--eEEEEEecCCC
Q psy15216 1551 ---ILEIGELCRSKGVIFHCDAAQAVGK-----IDIN-I---Q-----NYKVDLMSFSAHKIYGPKG--IGALYIRRNPR 1611 (2602)
Q Consensus 1551 ---l~~I~~ia~~~gi~vivD~a~~~g~-----~~~~-l---~-----~~~~D~~v~S~~K~~gp~G--~G~l~~~~~~~ 1611 (2602)
+++|+++|++|++++|+|++++.-. .+.. + . ..+.-+++.|++|.+|++| +||++.+++++
T Consensus 185 ~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRiG~~~~~~~l~ 264 (396)
T PRK09147 185 LDDWKKLFALSDRYGFVIASDECYSEIYFDEAAPPLGLLEAAAELGRDDFKRLVVFHSLSKRSNVPGLRSGFVAGDAALL 264 (396)
T ss_pred HHHHHHHHHHHHHcCeEEEeeccccccccCCCCCCchhhhhccccCccccccEEEEeccccccCCccceeeeecCCHHHH
Confidence 6778888999999999999986421 1111 0 0 1123378889999888888 89999988776
Q ss_pred CccccccccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceE-
Q psy15216 1612 TRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNL- 1690 (2602)
Q Consensus 1612 ~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~- 1690 (2602)
+.+.... .....+.+...+.+..+++. ....+.+.++.+++.++.+.+.|.+ . +.+. .|...
T Consensus 265 ~~~~~~~-------~~~~~~~~~~~q~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~L~~-~--~~~~------~p~~g~ 327 (396)
T PRK09147 265 KKFLLYR-------TYHGCAMPPAVQAASIAAWN-DEAHVRENRALYREKFDAVTPILAP-V--LDVQ------LPDAGF 327 (396)
T ss_pred HHHHHHh-------hhcccCCCHHHHHHHHHHhc-chhHHHHHHHHHHHHHHHHHHHHHH-h--cCCC------CCCeeE
Confidence 6554321 11122344444444434443 1234667777888888888888876 2 2221 12222
Q ss_pred EEEEec-CCcHHHHHhc---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1691 NISFNF-IEGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1691 ~~~~~~-~~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
++++.. .+..++...| +||.+.+|..|.... .+ .....+++||+++. +.++++.++++|++
T Consensus 328 f~~~~~~~~~~~~~~~ll~~~gv~v~pg~~f~~~~---------~~--~~~~~~~iRi~~~~--~~~~l~~~l~rl~~ 392 (396)
T PRK09147 328 YLWAKVPGDDTEFARRLYADYNVTVLPGSYLAREA---------HG--VNPGAGRVRIALVA--PLAECVEAAERIVD 392 (396)
T ss_pred EEEEECCCCHHHHHHHHHHhCCEEEeCCccccccc---------cC--CCCCCCeEEEEecC--CHHHHHHHHHHHHH
Confidence 333332 2455565554 699999998775310 00 01123799999984 57889999998886
|
|
| >TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.6e-20 Score=243.44 Aligned_cols=313 Identities=17% Similarity=0.171 Sum_probs=221.4
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCC------CCCcEEEeCCHHHHHHHHHHhcccc
Q psy15216 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA------DPREIIWTSGATESNNLAIKGAAHF 81 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~------~~~~Iv~t~g~T~al~~~~~~l~~~ 81 (2602)
++++.+.+++.+.+.....+ ++.......++|+.++++++. ++++|++|+|+|+|+.+++.++.
T Consensus 48 ~~~~~~~~~~~~~l~~~~~~--------~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~ii~t~G~t~al~~~~~~l~-- 117 (403)
T TIGR01265 48 RTDPEAEEAVKDALRSGKFN--------GYAPSVGALAAREAVAEYLSSDLPGKLTADDVVLTSGCSQAIEICIEALA-- 117 (403)
T ss_pred CCCHHHHHHHHHHHhcCCCC--------CCCCCCCCHHHHHHHHHHHHhhcCCCCCHHHEEEecChHHHHHHHHHHhC--
Confidence 67888999998877542111 111112356788889998874 56789999999999999999987
Q ss_pred cccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCC--CCccChHHHHhhccCCceEEEEecccCccccccc---HH
Q psy15216 82 YKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---IL 156 (2602)
Q Consensus 82 ~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~---l~ 156 (2602)
++||+|++++|+|+.+...+. ..|++++.++.++ ++.+|+++++++++++++++++++|+||||.++| ++
T Consensus 118 --~~gd~Vlv~~p~y~~~~~~~~---~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~ 192 (403)
T TIGR01265 118 --NPGANILVPRPGFPLYDTRAA---FSGLEVRLYDLLPEKDWEIDLDGLEALADEKTVAIVVINPSNPCGSVFSRDHLQ 192 (403)
T ss_pred --CCCCEEEEeCCCchhHHHHHH---HcCCEEEEecCCcccCCccCHHHHHHHhCcCccEEEEecCCCCCCCCCCHHHHH
Confidence 799999999999988765544 4499999988753 4679999999999999999999999999999997 77
Q ss_pred HHHHHHHhcCCEEEEecccccccc---c-ccCCCC---CccEEEeccccccCCCC--cEEEEEec--CCC-----Ccccc
Q psy15216 157 EIGELCRSKGVIFHCDAAQAVGKI---D-INIQNY---KVDLMSFSAHKIYGPKG--IGALYIRR--NPR-----TRIEA 220 (2602)
Q Consensus 157 ~I~~la~~~g~~livD~a~a~g~~---~-~dl~~~---~~D~~~~S~~K~~Gp~G--~G~l~~~~--~~~-----~~l~~ 220 (2602)
+|.++|+++|+++|+|++++.-.. + ..+..+ ..-+++.|++|.|+.+| +||+++++ ++. +.+..
T Consensus 193 ~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~v~~~~~~~~~~~~~~~~~~ 272 (403)
T TIGR01265 193 KIAEVARKLGIPIIADEIYGHMVFGDAPFIPMASFASIVPVLSLGGISKRWVVPGWRLGWIIIHDPHGIFRDTVLQGLKN 272 (403)
T ss_pred HHHHHHHHCCCEEEEEccccccccCCCCccchhhhccCCcEEEEeecccccCCCcceEEEEEEeCchhhhHHHHHHHHHH
Confidence 889999999999999999863211 1 112111 12377789999988888 89999853 221 11211
Q ss_pred eecCCCccccccccCcchhHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEc
Q psy15216 221 QIHGGGHEYGLRSGTLATHQIVGMGEAFRL-ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN 299 (2602)
Q Consensus 221 ~~~g~~~~~~~~~gt~~~~~~~al~~al~~-~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~ 299 (2602)
.. . ....++.+...++..+++. ...++++.++++.+.++++.+.|.. .+++.+..|.. ...+.+.++
T Consensus 273 ~~-------~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~p~~---g~f~~~~~~ 340 (403)
T TIGR01265 273 LL-------Q-RILGPATIVQGALPDILENTPQEFFDGKISVLKSNAELCYEELKD-IPGLVCPKPEG---AMYLMVKLE 340 (403)
T ss_pred Hh-------h-hhcCCChHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhc-CCCceecCCCc---eeEEEEecc
Confidence 11 0 0123455555566666652 3355778888888889999999976 56765443322 122333333
Q ss_pred c------cChhHHHHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 300 F------IEGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 300 ~------~~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
. .+..++...+ +||.+.+|..|.. .+++||+++. ..+.++..+++|.+
T Consensus 341 ~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~-------------------~~~iRis~~~--~~~~l~~~l~~l~~ 397 (403)
T TIGR01265 341 LELFPEIKDDVDFCEKLVREESVICLPGSAFGL-------------------PNWVRITITV--PESMLEEACSRIKE 397 (403)
T ss_pred ccccCCCCCHHHHHHHHHHhCCEEEeCccccCC-------------------CCeEEEEecC--CHHHHHHHHHHHHH
Confidence 2 1455666664 6999999987642 2899999984 57788888888774
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. |
| >PLN00143 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.1e-20 Score=240.46 Aligned_cols=312 Identities=14% Similarity=0.117 Sum_probs=218.6
Q ss_pred CCCCHHHHHHHHHHHhhc--cCC-CCCccchhHHHHHHHHHHHHHHHHHHh------CCCCCcEEEeCCHHHHHHHHHHh
Q psy15216 1403 TPIDPRVVDKMIPYLRVQ--FGN-PASRNHIYGWTAEKAIEKARNEVAQLI------YADPREIIWTSGATESNNLAIKG 1473 (2602)
Q Consensus 1403 ~~~~~~v~eal~~~l~~~--~~n-p~~~~~~~~~~~~~~~~~lr~~ia~~~------g~~~~~iv~t~gaT~al~~al~~ 1473 (2602)
.+.|+.+.+++.+.++.. ..| |.. ...++|+++++++ ++++++|++|+|+++++.+++.+
T Consensus 48 ~~~p~~~~~a~~~~~~~~~~~~Y~~~~-----------G~~~lr~aia~~~~~~~g~~~~~~~I~it~G~~~al~~~~~~ 116 (409)
T PLN00143 48 FRTTNIAEDAIVEAVRSAKFNSYAPTG-----------GILPARRAIADYLSNDLPYQLSPDDVYLTLGCKHAAEIIIKV 116 (409)
T ss_pred CCCCHHHHHHHHHHHhCcCCCCCCCCC-----------CCHHHHHHHHHHHHhhcCCCCCHhhEEEecChHHHHHHHHHH
Confidence 477888999999887642 122 222 2456788888877 35788999999999999999999
Q ss_pred hhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccC--CCCCcChhHHHhhccCCceEEEEeccccccccccC-
Q psy15216 1474 AAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK--NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP- 1550 (2602)
Q Consensus 1474 l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~--~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~- 1550 (2602)
+. ++||+|+++.|.|+.+....... |++++.++.+ .++.+|+++|+++++++++++++++||||||.+++
T Consensus 117 l~----~~gd~v~v~~P~y~~~~~~~~~~---g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~nP~NPTG~~~s~ 189 (409)
T PLN00143 117 LA----RPEANILLPRPGFPDVETYAIFH---HLEIRHFDLLPEKGWEVDLDAVEAIADENTIAMVIINPGNPCGSVYSY 189 (409)
T ss_pred Hc----CCCCEEEEcCCCCcCHHHHHHHc---CCEEEEEeccCCCCCcCCHHHHHHhcccCCEEEEEECCCCCCCCccCH
Confidence 87 89999999999999987766655 9999999874 34568999999999999999999999999999999
Q ss_pred --hHHHHHHhhhcCCEEEEecccccCc---cc-cc---CCCCCccEEEEccccccCCCc--eEEEEEe-c-CCCCcc---
Q psy15216 1551 --ILEIGELCRSKGVIFHCDAAQAVGK---ID-IN---IQNYKVDLMSFSAHKIYGPKG--IGALYIR-R-NPRTRI--- 1614 (2602)
Q Consensus 1551 --l~~I~~ia~~~gi~vivD~a~~~g~---~~-~~---l~~~~~D~~v~S~~K~~gp~G--~G~l~~~-~-~~~~~l--- 1614 (2602)
+++|+++|++|++++|+|++|..-. .+ .. +.....-+++.||+|.|+++| +||++++ + .+.+.+
T Consensus 190 ~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~pGlRvG~~v~~~p~~~~~~~~~~ 269 (409)
T PLN00143 190 EHLNKIAETARKLGILVIADEVYGHIVFGSKPFVPMGLFASIVPVITLGSISKRWMIPGWGLGWLVTCDPSGLLQICEIA 269 (409)
T ss_pred HHHHHHHHHHHHcCCeEEEEccccccccCCCCCcchhhhcccCcEEEEccchhhcCCCccceEEEEeeCchhhhhhHHHH
Confidence 7778888999999999999986311 11 11 111223477889999888888 8999984 3 232211
Q ss_pred ccccccCCccccCCCCCcchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEE
Q psy15216 1615 EAQIHGGGHEYGLRSGTLATHQIVGMGEAFRL-ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNIS 1693 (2602)
Q Consensus 1615 ~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~-~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~ 1693 (2602)
..+.. . ... ....+...+.++..+|.. ....+++.++++++.++++.+.|.+ +++..... .|...+|.
T Consensus 270 ~~~~~-~---~~~-~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~-~~~~~~~~-----~p~gg~f~ 338 (409)
T PLN00143 270 DSIKK-A---LNP-APFPPTFIQAAIPEILEKTTEDFFSKTINILRAALAFCYDKLKE-IPCIMCPQ-----KAEGAFFA 338 (409)
T ss_pred HHHHH-H---Hhc-cCCCCchHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCC-----CCCeeEEE
Confidence 11100 0 000 111244555555566642 2345777788888888888888876 44332221 12233333
Q ss_pred EecC---------CcHHHHHhc---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHH
Q psy15216 1694 FNFI---------EGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKL 1761 (2602)
Q Consensus 1694 ~~~~---------~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~ 1761 (2602)
|... +..++...+ +||.+.+|..|... +++||+++ .+.++++..+++
T Consensus 339 w~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~-------------------~~iRi~~~--~~~~~l~~al~r 397 (409)
T PLN00143 339 LVKLNLLLLEDIEDDMEFCLKLAKEESLIILPGVTVGLK-------------------NWLRITFA--VEQSSLEDGLGR 397 (409)
T ss_pred EEecchhhcCCCCCHHHHHHHHHHhCCEEEeCccccCCC-------------------CeEEEEEc--CCHHHHHHHHHH
Confidence 3221 234454333 79999999876432 79999998 368999999999
Q ss_pred HHH
Q psy15216 1762 LKM 1764 (2602)
Q Consensus 1762 L~~ 1764 (2602)
|++
T Consensus 398 l~~ 400 (409)
T PLN00143 398 LKS 400 (409)
T ss_pred HHH
Confidence 986
|
|
| >PRK04781 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.5e-20 Score=239.67 Aligned_cols=284 Identities=14% Similarity=0.123 Sum_probs=206.0
Q ss_pred HHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCC-CEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCC-
Q psy15216 43 IEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRG-KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN- 120 (2602)
Q Consensus 43 ~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~g-d~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~- 120 (2602)
..++|+.+|+++|+++++|++|+|+++++++++.++. .+| |.|++++|.|+.+....+.. |++++.++.+.
T Consensus 61 ~~~lr~~ia~~~~~~~~~I~~t~G~~~~l~~~~~~~~----~~g~~~vlv~~p~y~~~~~~~~~~---g~~~~~v~~~~~ 133 (364)
T PRK04781 61 PPGLRSALAALYGCAPEQLLIGRGSDEAIDLLVRALC----VPGRDAVLVTPPVFGMYAVCARLQ---NAPLVEVPLVDG 133 (364)
T ss_pred HHHHHHHHHHHhCcChHHEEEeCCHHHHHHHHHHHhc----CCCCCeEEEcCCChHHHHHHHHHc---CCEEEEEecCCC
Confidence 4789999999999999999999999999999999987 688 79999999888766554444 99999998742
Q ss_pred --CCccChHHHHhh-ccCCceEEEEecccCcccccccHHHHHHHHHh--cCCEEEEecccccccc---cccC-CCCCccE
Q psy15216 121 --NGLITLSQLEEK-ICSDTILVSVMLVNNEIGVIQPILEIGELCRS--KGVIFHCDAAQAVGKI---DINI-QNYKVDL 191 (2602)
Q Consensus 121 --~~~ld~e~l~~~-i~~~tklv~i~~~~npTG~~~~l~~I~~la~~--~g~~livD~a~a~g~~---~~dl-~~~~~D~ 191 (2602)
++.+|++++.+. ..++++++++++||||||.++|.+++.++++. +++++|+|+++..-.. ...+ ...+.-+
T Consensus 134 ~~~~~~d~~~l~~~~~~~~~~lv~l~~p~NPTG~~~~~~~~~~l~~~~~~~~~iI~Deay~~f~~~~~~~~~~~~~~~vi 213 (364)
T PRK04781 134 ADGFHADVPAIVAAALASNAKLVFLCSPSNPAGSAIALDQIERALQALQGKALVVVDEAYGEFSDVPSAVGLLARYDNLA 213 (364)
T ss_pred ccCCCcCHHHHHHHHhccCCeEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCcEEEEeCcchhhcCCcchHHHHhhCCCEE
Confidence 345789988654 46789999999999999999999988888764 4799999999863221 1111 2223347
Q ss_pred EEeccccccCCCC--cEEEEEecCCCCcccceecCCCccccccccCcchhHHHHHHHHHHHH-HHhHHHHHHHHHHHHHH
Q psy15216 192 MSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLA-RIEMKEELKRILFLQKR 268 (2602)
Q Consensus 192 ~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~-~~~~~~~~~~~~~l~~~ 268 (2602)
++.||+|.||++| +||+++++++++.+..... .++.+.+...++..+|+.. .....+..+++.+.++.
T Consensus 214 ~~~SfSK~~gl~GlRvGy~v~~~~l~~~l~~~~~---------~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~r~~ 284 (364)
T PRK04781 214 VLRTLSKAHALAAARIGSLIANAELIAVLRRCQA---------PYPVPTPCAALAEQALSAPALAVTARRVAEVRAERER 284 (364)
T ss_pred EEecChhhcccccceeeeeeCCHHHHHHHHhccC---------CCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 7889999999888 8999999888777654431 2233444444444555421 12345555677888889
Q ss_pred HHHHHhhccCceEEeCCCCCCCCceEEEEEcccChhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeE
Q psy15216 269 LYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSI 346 (2602)
Q Consensus 269 l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~i 346 (2602)
+.+.|++ ++++....++. ...+.+.++ +..++.+.+ +||.++++..+.. ..+++
T Consensus 285 l~~~L~~-~~~~~~~~p~~---g~f~~~~~~--~~~~~~~~l~~~gI~v~~~~~~~~------------------~~~~~ 340 (364)
T PRK04781 285 LHAALAQ-LPGVRRVYPSQ---GNFLLVRFD--DAEAAFQALLAAGVVVRDQRAAPR------------------LSDAL 340 (364)
T ss_pred HHHHHHh-CCCCCeECCCC---CcEEEEEcC--CHHHHHHHHHHCCeEEeeCCCCCC------------------CCCeE
Confidence 9999976 56764222322 123333333 455666666 8999998764421 13789
Q ss_pred EEecCCCCCHHHHHHHHHHHHhh
Q psy15216 347 RFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 347 Ris~~~~~t~edid~li~~L~~~ 369 (2602)
||+++ +.+++++++++|++.
T Consensus 341 Ris~~---~~~~~~~l~~al~~~ 360 (364)
T PRK04781 341 RITLG---TPEQNDRVLAALQRT 360 (364)
T ss_pred EEeCC---CHHHHHHHHHHHHHH
Confidence 99998 799999999999863
|
|
| >TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.8e-20 Score=245.27 Aligned_cols=313 Identities=14% Similarity=0.093 Sum_probs=220.7
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhC-----CCCCcEEEeCCHHHHHHHHHHhccccc
Q psy15216 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIY-----ADPREIIWTSGATESNNLAIKGAAHFY 82 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g-----~~~~~Iv~t~g~T~al~~~~~~l~~~~ 82 (2602)
++++.+.+++.+.+..... .+|.......++|++++++++ +++++|++|+|+++|+.+++.++.
T Consensus 48 ~~~~~~~~~~~~~~~~~~~--------~~Y~~~~g~~~lr~aia~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~--- 116 (401)
T TIGR01264 48 PTDPEVMQAMKDSLDSGKY--------NGYAPTVGALSAREAIASYYHNPDGPIEADDVVLCSGCSHAIEMCIAALA--- 116 (401)
T ss_pred CCCHHHHHHHHHHHhccCC--------CCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHEEECcChHHHHHHHHHHhC---
Confidence 5778888888887764210 011111234667888888886 677899999999999999999987
Q ss_pred ccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCC--CCccChHHHHhhccCCceEEEEecccCccccccc---HHH
Q psy15216 83 KKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILE 157 (2602)
Q Consensus 83 ~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~---l~~ 157 (2602)
++||+|++++|.|+.+...+... |++++.++++. ++.+|++.+++.++++++++++++|+||||.+++ +++
T Consensus 117 -~~gd~v~i~~P~y~~~~~~~~~~---g~~v~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~NPtG~~~~~~~~~~ 192 (401)
T TIGR01264 117 -NAGQNILVPRPGFPLYETLAESM---GIEVKLYNLLPDKSWEIDLKQLESLIDEKTAALIVNNPSNPCGSVFSRQHLEE 192 (401)
T ss_pred -CCCCEEEEeCCCChhHHHHHHHc---CCEEEEeecCCccCCCCCHHHHHHHhccCceEEEEcCCCCCCCCCCCHHHHHH
Confidence 79999999999998876665554 99999988753 4679999999999888999999999999999997 667
Q ss_pred HHHHHHhcCCEEEEeccccccc----ccccCCCCC---ccEEEeccccccCCCC--cEEEEEecC------CCCccccee
Q psy15216 158 IGELCRSKGVIFHCDAAQAVGK----IDINIQNYK---VDLMSFSAHKIYGPKG--IGALYIRRN------PRTRIEAQI 222 (2602)
Q Consensus 158 I~~la~~~g~~livD~a~a~g~----~~~dl~~~~---~D~~~~S~~K~~Gp~G--~G~l~~~~~------~~~~l~~~~ 222 (2602)
|+++|+++|+++|+|+++..-. ....+.... .-+++.||||.|+++| +||+++++. .++.+....
T Consensus 193 l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~iv~~~~~~~~~~~~~~~~~~~ 272 (401)
T TIGR01264 193 ILAVAERQCLPIIADEIYGDMVFSGATFEPLASLSSTVPILSCGGLAKRWLVPGWRLGWIIIHDRRGILRDIRDGLVKLS 272 (401)
T ss_pred HHHHHHHCCCEEEEEhhhhhhccCCcccccHHHcCCCCcEEEEccCcccCCCccceEEEEEecCcchhHHHHHHHHHHHh
Confidence 8888999999999999986321 111121111 2377889999998888 899998742 112221111
Q ss_pred cCCCccccccccCcchhHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc-
Q psy15216 223 HGGGHEYGLRSGTLATHQIVGMGEAFRL-ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF- 300 (2602)
Q Consensus 223 ~g~~~~~~~~~gt~~~~~~~al~~al~~-~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~- 300 (2602)
.....++.+...++..+|.. ...++++.++++++.++++.+.|.+ ++++....|.. ...+++.++.
T Consensus 273 --------~~~~~~~~~~q~a~~~~l~~~~~~~l~~~~~~~~~~r~~l~~~L~~-~~~~~~~~p~~---g~f~~~~~~~~ 340 (401)
T TIGR01264 273 --------QRILGPCTIVQGALPSILLRTPQEYFDGTLSVLESNAMLCYGALAA-VPGLRPVMPSG---AMYMMVGIEME 340 (401)
T ss_pred --------hccCCCCcHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHh-CCCCcccCCCe---eeEEEEEeccc
Confidence 00123455555556566642 2356778888888899999999987 56655432321 1223333321
Q ss_pred -----cChhHHHHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 301 -----IEGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 301 -----~~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
.+..++...+ +||.+.+|..|.. .+++||+++. .+++++..+++|.+
T Consensus 341 ~~~~~~~~~~~~~~l~~~~gI~v~pg~~f~~-------------------~~~iRis~~~--~~~~l~~~l~rl~~ 395 (401)
T TIGR01264 341 HFPEFKNDVEFTERLVAEQSVFCLPGSCFEY-------------------PGFFRVVLTV--PVVMMEEACSRIQE 395 (401)
T ss_pred ccCCCCCHHHHHHHHHHhCCEEEeCchhcCC-------------------CCeEEEEEcC--CHHHHHHHHHHHHH
Confidence 1345555554 6999998876632 2799999984 57899998988875
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs. |
| >PRK08912 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.6e-20 Score=242.68 Aligned_cols=315 Identities=17% Similarity=0.163 Sum_probs=221.0
Q ss_pred CCCHHHHHHHHHHHhhc-cCCCCCccchhHHHHHHHHHHHHHHHHHHh----C--CCCC-cEEEeCCHHHHHHHHHHhhh
Q psy15216 1404 PIDPRVVDKMIPYLRVQ-FGNPASRNHIYGWTAEKAIEKARNEVAQLI----Y--ADPR-EIIWTSGATESNNLAIKGAA 1475 (2602)
Q Consensus 1404 ~~~~~v~eal~~~l~~~-~~np~~~~~~~~~~~~~~~~~lr~~ia~~~----g--~~~~-~iv~t~gaT~al~~al~~l~ 1475 (2602)
+.|+.+.+++.+.+... ..++.. ....++|+++++++ | ++++ +|++|+|+++|+..++.++.
T Consensus 39 ~~p~~~~~~~~~~~~~~~~~Y~~~----------~G~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~~~ 108 (387)
T PRK08912 39 PGPEDVRRAAADALLDGSNQYPPM----------MGLPELRQAVAAHYARFQGLDLDPETEVMVTSGATEALAAALLALV 108 (387)
T ss_pred CCCHHHHHHHHHHHhcCCCCCCCC----------CCcHHHHHHHHHHHHHHhCCCCCCcccEEEeCCcHHHHHHHHHHhc
Confidence 44567777777766432 222221 11345666666654 4 4677 89999999999999999887
Q ss_pred hhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCC-CCCcChhHHHhhccCCceEEEEeccccccccccC---h
Q psy15216 1476 HFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---I 1551 (2602)
Q Consensus 1476 ~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~-~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~---l 1551 (2602)
++||+|++++|.|+.+...+..+ |++++.++.++ ++.+|+++++++++++++++++++|+||||.++| +
T Consensus 109 ----~~gd~Vlv~~p~y~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~s~~~~ 181 (387)
T PRK08912 109 ----EPGDEVVLFQPLYDAYLPLIRRA---GGVPRLVRLEPPHWRLPRAALAAAFSPRTKAVLLNNPLNPAGKVFPREEL 181 (387)
T ss_pred ----CCCCEEEEeCCCchhhHHHHHHc---CCEEEEEecCcccCcCCHHHHHHHhCccceEEEEeCCCCCcCcccCHHHH
Confidence 89999999999999887766554 99999999864 5779999999999999999999999999999998 6
Q ss_pred HHHHHHhhhcCCEEEEecccccCc------ccc-cCCC-CCccEEEEccccccCCCc--eEEEEEecCCCCccccccccC
Q psy15216 1552 LEIGELCRSKGVIFHCDAAQAVGK------IDI-NIQN-YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGG 1621 (2602)
Q Consensus 1552 ~~I~~ia~~~gi~vivD~a~~~g~------~~~-~l~~-~~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~~g~ 1621 (2602)
++|.++|++|++++|+|++|+... .++ .+.. .+.++++.|++|.+|++| +||+++++++++.+.....
T Consensus 182 ~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~~~~l~~~~~-- 259 (387)
T PRK08912 182 ALLAEFCQRHDAVAICDEVWEHVVFDGRRHIPLMTLPGMRERTVKIGSAGKIFSLTGWKVGFVCAAPPLLRVLAKAHQ-- 259 (387)
T ss_pred HHHHHHHHHCCeEEEEhhhhhhcccCCCCCcChhhCCCccCceEEEeechhhccCcCceeEEEecCHHHHHHHHHHHh--
Confidence 678999999999999999975211 111 1211 235688999999999888 8999999877666543221
Q ss_pred CccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEec----C
Q psy15216 1622 GHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF----I 1697 (2602)
Q Consensus 1622 ~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~----~ 1697 (2602)
....+.+.....++..++......+++.++++.++++++.+.|.. . ++.+..+... ....+.++. .
T Consensus 260 -----~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~g~---~~l~~~l~~~~~~~ 329 (387)
T PRK08912 260 -----FLTFTTPPNLQAAVAYGLGKPDDYFEGMRADLARSRDRLAAGLRR-I-GFPVLPSQGT---YFLTVDLAPLGLAE 329 (387)
T ss_pred -----hccccCChHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHh-C-CCcccCCCcc---eEEEecccccCCCC
Confidence 111223333344444555422344677788889999999999987 3 6655432111 112223332 2
Q ss_pred CcHHHHHhc---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1698 EGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1698 ~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
+..++...| +||.+.+|..|... ....+++||+++. ..+.++.+++.|++
T Consensus 330 ~~~~~~~~l~~~~gV~v~pg~~f~~~---------------~~~~~~iRl~~~~--~~~~l~~~l~rl~~ 382 (387)
T PRK08912 330 DDVAFCRRLVEEAGVAAIPVSAFYEE---------------DPVTSVVRFCFAK--RDATLDEAVERLAA 382 (387)
T ss_pred CHHHHHHHHHhcCCEEEecchhhCCC---------------CCCCCEEEEEEeC--CHHHHHHHHHHHHH
Confidence 345566554 69999998876431 0113799999995 57999999988876
|
|
| >TIGR03538 DapC_gpp succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.4e-20 Score=243.33 Aligned_cols=315 Identities=13% Similarity=0.097 Sum_probs=219.4
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHh--------CCCCC-cEEEeCCHHHHHHHHHHhc
Q psy15216 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI--------YADPR-EIIWTSGATESNNLAIKGA 78 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~--------g~~~~-~Iv~t~g~T~al~~~~~~l 78 (2602)
++|+.+.+++.+.+.....|+.. ....++|+++|+++ |++++ +|++|+|+++|+.+++.++
T Consensus 41 ~~~~~~~~a~~~~~~~~~~Y~~~----------~G~~~lr~aia~~~~~~~~~~~~~~~~~~i~it~Ga~~al~~~~~~l 110 (393)
T TIGR03538 41 PTPAFVLEALRENLHGLSTYPTT----------KGLPELRQAIARWLERRFDLPTGVDPERHVLPVNGTREALFAFAQAV 110 (393)
T ss_pred CCCHHHHHHHHHHhhccCCCCCC----------CCCHHHHHHHHHHHHHhhCCcccCCCCceEEECCCcHHHHHHHHHHH
Confidence 56788888888876544334432 12345667777766 35664 7999999999999999998
Q ss_pred ccccccCCCE--EEEcCCCCcccHHHHHHHHhCCcEEEEeccCC--CCccChHHHHhhccCCceEEEEecccCccccccc
Q psy15216 79 AHFYKKRGKH--IITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP 154 (2602)
Q Consensus 79 ~~~~~~~gd~--Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~ 154 (2602)
. +|||. |+++.|.|+.+....... |++++.+++++ ++.+|++++++++.+++|++++++||||||.+++
T Consensus 111 ~----~~gd~~~vlv~~P~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~p~NPtG~~~s 183 (393)
T TIGR03538 111 I----NPGQAPLVVMPNPFYQIYEGAALLA---GAEPYFLNCTAENGFLPDFDAVPESVWRRCQLLFVCSPGNPTGAVLS 183 (393)
T ss_pred c----CCCCcceEEecCCCCcchHHHHHhc---CCeEEEeeccccCCCCCCHHHHHHHHhhcceEEEEeCCCCCcCcccC
Confidence 7 79986 999999999987766555 99999999864 3568999999998889999999999999999999
Q ss_pred ---HHHHHHHHHhcCCEEEEecccccccc-----ccc----CC-----CCCccEEEeccccccCCCC--cEEEEEecCCC
Q psy15216 155 ---ILEIGELCRSKGVIFHCDAAQAVGKI-----DIN----IQ-----NYKVDLMSFSAHKIYGPKG--IGALYIRRNPR 215 (2602)
Q Consensus 155 ---l~~I~~la~~~g~~livD~a~a~g~~-----~~d----l~-----~~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~ 215 (2602)
+++|+++|++||++||+|+++..... +.. .. ....-+++.|++|.++.+| +||++.+++++
T Consensus 184 ~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~~~GlRvG~~i~~~~l~ 263 (393)
T TIGR03538 184 LDTLKKLIELADQYGFIIASDECYSELYFDEGNPPAGLLQAAAQLGRDDFRRCLVFHSLSKRSNLPGLRSGFVAGDAEIL 263 (393)
T ss_pred HHHHHHHHHHHHHCCEEEEECcchhhcccCCCCCCcCHHHhcccccccccccEEEEecchhhcCCcccceEEEecCHHHH
Confidence 66788889999999999999863211 111 00 1122378889999888888 89999988776
Q ss_pred CcccceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEE
Q psy15216 216 TRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLN 295 (2602)
Q Consensus 216 ~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~ 295 (2602)
+.+..... ....+.+.....++.+++.. ..++++.+.++++.++.+.+.|.. . +.+..+ ..+.+
T Consensus 264 ~~~~~~~~-------~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~L~~-~--~~~~~p-----~gg~f 327 (393)
T TIGR03538 264 KAFLRYRT-------YHGCAMPIPTQLASIAAWND-EQHVRENRALYREKFAAVLEILGQ-V--LDLELP-----DAGFY 327 (393)
T ss_pred HHHHHHHH-------hhccCcCHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHHHHHHHh-h--CcccCC-----CeeEE
Confidence 66643221 11223444444444445532 345677788888888888888866 2 222211 12233
Q ss_pred EEEcc-cChhHHHHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 296 ISFNF-IEGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 296 ~~~~~-~~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
+++.. .+..++...+ +||.+.+|..|.... .+ .....+++||+++. ++++++.++++|++
T Consensus 328 ~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~---------~~--~~~~~~~~Ris~~~--~~~~l~~~l~~l~~ 391 (393)
T TIGR03538 328 LWPKVPGDDEAFARALYEEENVTVLPGRFLAREA---------EG--VNPGEGRVRIALVA--PLEECVEAAERIRS 391 (393)
T ss_pred EEEECCCCHHHHHHHHHHHCCEEEeCCccccccc---------cC--CCCCCCEEEEEecC--CHHHHHHHHHHHHH
Confidence 33332 3556676665 599999998764210 00 01123799999974 68999999998874
|
This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK08363 alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.1e-20 Score=240.03 Aligned_cols=315 Identities=12% Similarity=0.104 Sum_probs=220.3
Q ss_pred CCCCHHHHHHHHHHHhhc-cCCCCCccchhHHHHHHHHHHHHHHHHHHh----C--CCCCcEEEeCCHHHHHHHHHHhhh
Q psy15216 1403 TPIDPRVVDKMIPYLRVQ-FGNPASRNHIYGWTAEKAIEKARNEVAQLI----Y--ADPREIIWTSGATESNNLAIKGAA 1475 (2602)
Q Consensus 1403 ~~~~~~v~eal~~~l~~~-~~np~~~~~~~~~~~~~~~~~lr~~ia~~~----g--~~~~~iv~t~gaT~al~~al~~l~ 1475 (2602)
.++++.+.+++.+.+... ..++.. ....++|+++++++ | +++++|++|+|+++|+.+++.++.
T Consensus 45 ~~p~~~~~~~~~~~~~~~~~~Y~~~----------~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~~ 114 (398)
T PRK08363 45 FQPPEHMKEAYCRAIKEGHNYYGPS----------EGLPELREAIVKREKRKNGVDITPDDVRVTAAVTEALQLIFGALL 114 (398)
T ss_pred CCCCHHHHHHHHHHHHcCCCCCCCC----------CCcHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHhC
Confidence 356778888888877542 112111 12467788888876 3 578899999999999999999887
Q ss_pred hhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEe-ccCC-CCCcChhHHHhhccCCceEEEEeccccccccccC---
Q psy15216 1476 HFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYL-KPKN-NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP--- 1550 (2602)
Q Consensus 1476 ~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v-~~~~-~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~--- 1550 (2602)
++||+|++++|+|+++...++.. |..++.+ +.+. ++.+|++++++++++++++++++||+||||.+++
T Consensus 115 ----~~gd~Vl~~~p~y~~~~~~~~~~---g~~~v~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~ 187 (398)
T PRK08363 115 ----DPGDEILIPGPSYPPYTGLVKFY---GGVPVEYRTIEEEGWQPDIDDIRKKITEKTKAIAVINPNNPTGALYEKKT 187 (398)
T ss_pred ----CCCCEEEEcCCCCcchHHHHHHc---CCEEEEeccccccCCcCCHHHHHhhCCcceEEEEEECCCCCCCcCcCHHH
Confidence 89999999999999987766554 8888877 4444 4568999999999999999999999999999999
Q ss_pred hHHHHHHhhhcCCEEEEecccccCcc---cc---cCCCCCccEEEEccccccCCCc--eEEEEE--ecCCCCcccccccc
Q psy15216 1551 ILEIGELCRSKGVIFHCDAAQAVGKI---DI---NIQNYKVDLMSFSAHKIYGPKG--IGALYI--RRNPRTRIEAQIHG 1620 (2602)
Q Consensus 1551 l~~I~~ia~~~gi~vivD~a~~~g~~---~~---~l~~~~~D~~v~S~~K~~gp~G--~G~l~~--~~~~~~~l~~~~~g 1620 (2602)
+++|.++|++||+++|+|++|+.... +. .+.....-+++.||+|.++.+| +||+++ ++++++.+......
T Consensus 188 ~~~l~~~a~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~~~~~~~~~~~~~l~~~~~~ 267 (398)
T PRK08363 188 LKEILDIAGEHDLPVISDEIYDLMTYEGKHVSPGSLTKDVPVIVMNGLSKVYFATGWRLGYIYFVDPEGKLAEVREAIDK 267 (398)
T ss_pred HHHHHHHHHHcCeEEEEhhhhhhhccCCcccCHHHcCcCCcEEEEecchhccCCccceEEEEEEeCcHHHHHHHHHHHHH
Confidence 88899999999999999999763211 11 1111122366779999887777 899998 54444444332210
Q ss_pred CCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEE---Eec-
Q psy15216 1621 GGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNIS---FNF- 1696 (2602)
Q Consensus 1621 ~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~---~~~- 1696 (2602)
. ... ..+.+.+...++..+|......+.+.+++++++++++.+.|.+ .+++.+..+ ...++. ++.
T Consensus 268 ~---~~~-~~~~s~~~q~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~L~~-~~~~~~~~p------~g~~~~~~~l~~~ 336 (398)
T PRK08363 268 L---ARI-RLCPNTPAQFAAIAGLTGPMDYLEEYMKKLKERRDYIYKRLNE-IPGISTTKP------QGAFYIFPRIEEG 336 (398)
T ss_pred H---hcc-cccCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhc-CCCCEecCC------CeEEEEEEEeccC
Confidence 0 001 1234445555555666533345677788888899999999977 567665422 222232 332
Q ss_pred --CCcHHHHHh-c--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1697 --IEGESLLMA-I--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1697 --~~~~~~~~~-L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
.+..+++.. | +||.+++|..|... ..+++|++++ .+.++++.++++|++
T Consensus 337 ~~~~~~~~~~~~l~~~gV~v~~g~~f~~~-----------------~~~~iRis~~--~~~~~l~~~l~~l~~ 390 (398)
T PRK08363 337 PWKDDKEFVLDVLHEAHVLFVHGSGFGEY-----------------GAGHFRLVFL--PPVEILEEAMDRFEE 390 (398)
T ss_pred CCCCHHHHHHHHHHhCCEEEeCchhhCCC-----------------CCCeEEEEec--CCHHHHHHHHHHHHH
Confidence 133444433 3 79999999877431 1379999996 468999999999986
|
|
| >PRK02610 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.3e-20 Score=239.97 Aligned_cols=301 Identities=16% Similarity=0.119 Sum_probs=212.7
Q ss_pred CCCHHHHHHHHHHHhhh---cCCCCCCCcchhhhHHHHHHHHHHHHHHHhC--------CCCCcEEEeCCHHHHHHHHHH
Q psy15216 8 PIDPRVVDKMIPYLRVQ---FGNPASRNHIYGWTAEKAIEKARNEVAQLIY--------ADPREIIWTSGATESNNLAIK 76 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~---~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g--------~~~~~Iv~t~g~T~al~~~~~ 76 (2602)
++|+.+.+++.+.+... ..+|.. ...++|++++++++ +++++|++|+|+++++..++.
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~Y~~~-----------G~~~Lr~aia~~~~~~~~~~~~v~~~~I~it~Ga~~al~~~~~ 109 (374)
T PRK02610 41 DLPPDLKQKLAWLYQQGIESNRYPDG-----------GHEALKQAIAEYVNESAAGSSQITPANISVGNGSDELIRSLLI 109 (374)
T ss_pred CCCHHHHHHHHHHHhhcccccCCCCC-----------chHHHHHHHHHHhCccccccCCCCHHHEEEcCChHHHHHHHHH
Confidence 67888999998876542 123322 24678888999887 688899999999999998887
Q ss_pred hcccccccCCC-EEEEcCCCCcccHHHHHHHHhCCcEEEEeccCC-CCccChHHHHhhcc----CCceEEEEecccCccc
Q psy15216 77 GAAHFYKKRGK-HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NGLITLSQLEEKIC----SDTILVSVMLVNNEIG 150 (2602)
Q Consensus 77 ~l~~~~~~~gd-~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~-~~~ld~e~l~~~i~----~~tklv~i~~~~npTG 150 (2602)
++. .+|| .|++++|.|+.+...++.. |++++.++.++ ++.+|+++++++++ ++++++++++||||||
T Consensus 110 ~~~----~~g~~~Vlv~~P~y~~~~~~~~~~---g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~k~i~l~~P~NPTG 182 (374)
T PRK02610 110 ATC----LGGEGSILVAEPTFSMYGILAQTL---GIPVVRVGRDPETFEIDLAAAQSAIEQTQNPPVRVVFVVHPNSPTG 182 (374)
T ss_pred HHc----CCCCCeEEEcCCChHHHHHHHHHc---CCEEEEecCCcccCCCCHHHHHHHHHhhcCCCceEEEEeCCCCCCC
Confidence 766 5675 8999999999988777666 99999999865 47899999999886 4899999999999999
Q ss_pred ccccHHHHHHHHH-hcCCEEEEecccccccc--c-ccCCCCCccEEEeccccccCCCC--cEEEEEecCCCCcccceecC
Q psy15216 151 VIQPILEIGELCR-SKGVIFHCDAAQAVGKI--D-INIQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHG 224 (2602)
Q Consensus 151 ~~~~l~~I~~la~-~~g~~livD~a~a~g~~--~-~dl~~~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g 224 (2602)
.+++.+++.++++ .+++++|+|+++..-.. . ..+.....-+++.||+|.+|++| +||+++++++++.+.....
T Consensus 183 ~~~s~~~l~~l~~~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~ivi~SfSK~~g~~GlRiG~~v~~~~l~~~l~~~~~- 261 (374)
T PRK02610 183 NPLTAAELEWLRSLPEDILVVIDEAYFEFSQTTLVGELAQHPNWVILRTFSKAFRLAAHRVGYAIGHPELIAVLEKVRL- 261 (374)
T ss_pred CCCCHHHHHHHHhccCCcEEEEeccccccCccchHHHHhcCCCEEEEEecchhccCcccceeeeecCHHHHHHHHHhcC-
Confidence 9999887766654 25899999999853211 1 11222222377889999999888 8999998877776654331
Q ss_pred CCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc-cCh
Q psy15216 225 GGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEG 303 (2602)
Q Consensus 225 ~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~-~~~ 303 (2602)
.++.+.....++..+++....+.+.... ..+.++.+.+.|.. ++++.+. +.. ...+++.++. .+.
T Consensus 262 --------~~~~~~~~q~a~~~~l~~~~~~~~~~~~-~~~~r~~l~~~L~~-~~~~~~~-p~~---g~f~~~~l~~~~~~ 327 (374)
T PRK02610 262 --------PYNLPSFSQLAAQLALEHRQELLAAIPE-ILQERDRLYQALQE-LPQLRVW-PSA---ANFLYLRLSQDAAL 327 (374)
T ss_pred --------CCCCCHHHHHHHHHHhcCHHHHHHHHHH-HHHHHHHHHHHHHh-CCCcEeC-CCc---ceEEEEeCCCCCCH
Confidence 1233445555555666533333333333 34446777888866 5676653 222 1233344443 355
Q ss_pred hHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 304 ESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 304 ~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
..+.+.| +||.++++ .+++||+++ +.+++++++++|++
T Consensus 328 ~~~~~~l~~~gi~v~~~------------------------~~~lRls~~---~~~~~~~~l~~l~~ 367 (374)
T PRK02610 328 AALHQALKAQGTLVRHT------------------------GGGLRITIG---TPEENQRTLERLQA 367 (374)
T ss_pred HHHHHHHHHCCEEEEeC------------------------CCeEEEeCC---CHHHHHHHHHHHHH
Confidence 6666666 78888631 268999998 56889999999985
|
|
| >COG3844 Kynureninase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.5e-20 Score=208.85 Aligned_cols=340 Identities=16% Similarity=0.178 Sum_probs=261.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhhcCCCCCCCcc-hhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcc
Q psy15216 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHI-YGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAA 79 (2602)
Q Consensus 1 Ld~a~~~~~p~~v~~a~~~~l~~~~~~p~~~~~~-~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~ 79 (2602)
||.++-+..|+.+....++...+.|+...-..+. ....+..+-+.+-.++|.++|+.+++++++.+++.-++.++.+..
T Consensus 35 LdgnSLGa~p~~~~a~~~q~a~deW~~~lirsw~~a~~~W~~lp~~lgdklApLiGA~~~Evvv~dtts~nl~k~L~aal 114 (407)
T COG3844 35 LDGNSLGARPRAVTARLQQVATDEWGEGLIRSWNKAKADWFDLPERLGDKLAPLIGARAGEVVVTDTTSINLFKVLAAAL 114 (407)
T ss_pred eeccccccCchHHHHHHHHHHHHHHHhhhhhhhcccCCchhhchhHHHHHhhhhhcCCCCceEEeCCcchHHHHHHHHHh
Confidence 5777888778666666655554444332111111 122344566778899999999999999999999998888888776
Q ss_pred cccccCCCEEEEcC-CCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHH
Q psy15216 80 HFYKKRGKHIITVQ-TEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEI 158 (2602)
Q Consensus 80 ~~~~~~gd~Vlv~~-~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I 158 (2602)
. .++|+.||+++ .+||+-....+-+ +++..+..+-.+.+.+++++++++.++.+|+++|++.-||.++++.+|
T Consensus 115 r--~~~~r~vIv~E~~~fpTdly~a~g~----~~~~~~~~~~~~~~~P~~~~~~~~dd~AvV~L~~V~y~TGql~dm~ai 188 (407)
T COG3844 115 R--PQEGRRVIVSEGDNFPTDLYIAEGL----ADLLGIGYDLEGVIAPRALEEAITDDVAVVLLSHVNYKTGQLLDMRAI 188 (407)
T ss_pred c--cCCCceEEeecCCCCCcchhhhcch----hhhhcccccceeeeChHHHHHhhccceEEEEeccccccccceeeHHHH
Confidence 2 35577777765 4566655544433 111111122235567889999999999999999999999999999999
Q ss_pred HHHHHhcCCEEEEecccccccccccCCCCCccEEEecccc-cc-CCCCcEEEEEecCCCCcccceecCCCcc--------
Q psy15216 159 GELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IY-GPKGIGALYIRRNPRTRIEAQIHGGGHE-------- 228 (2602)
Q Consensus 159 ~~la~~~g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K-~~-Gp~G~G~l~~~~~~~~~l~~~~~g~~~~-------- 228 (2602)
..++|+||++++.|-+|+.|.+|+++...++||-+.+.|| +- ||.+.+++++.++..+...|...||.++
T Consensus 189 T~~AH~~galv~wDLAHsaGavp~~Lh~~gaDfaigcsyKYLNgGPGapa~l~v~~~h~e~~~~~lsgW~gha~pf~m~~ 268 (407)
T COG3844 189 TALAHQHGALVGWDLAHSAGAVPVDLHAAGADFAIGCSYKYLNGGPGAPAGLFVAPRHRERSWPPLSGWWGHARPFAMEE 268 (407)
T ss_pred HHHHHhcCceEEeehhcccCCcceeecccCCCeeeeeeceeccCCCCCceeEEeccccccccccccccccCCCCcchhhh
Confidence 9999999999999999999999999999999999999999 44 4656999999999998888877777542
Q ss_pred --------ccccccCcchhHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHhhccC--ceEEeCCCCCCCCceEEEE
Q psy15216 229 --------YGLRSGTLATHQIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIE--EIYINGDMNNRIPHNLNIS 297 (2602)
Q Consensus 229 --------~~~~~gt~~~~~~~al~~al~~~-~~~~~~~~~~~~~l~~~l~~~L~~~~~--g~~l~~~~~~~~~~~~~~~ 297 (2602)
.+|..||+++.++.++..+|++. .-.+.+.+++-..+..++.+.+....+ ++++..|... .-++.-++
T Consensus 269 ~y~p~~ga~rf~~gt~~V~s~aal~~aLDifa~~~i~~lR~kSlaLTd~fieLvEa~~~~~~l~l~tPr~~-~~rGsqvS 347 (407)
T COG3844 269 VYAPGPGARRFLCGTQPVLSLAALEGALDIFADVDITELRKKSLALTDYFIELVEARCEYYGLTLVTPRAH-EERGSQVS 347 (407)
T ss_pred ccCcCccccceeeCCcchhhhHHHhhhhhhhhhcCHHHHHHhhhHHHHHHHHHHHhccccCCcEEeccchh-hhccceee
Confidence 45677999999999999999943 445889999999999999999887555 6888877653 34556677
Q ss_pred EcccChhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecC-CCCCHHHHHHHHHHHHhhh
Q psy15216 298 FNFIEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIG-RFTTEKEIDFTIKLLKMKE 370 (2602)
Q Consensus 298 ~~~~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~-~~~t~edid~li~~L~~~~ 370 (2602)
+...+..+++++| +|+.... +.++.+|+.+. .|++..||...++.|+++.
T Consensus 348 ~~hp~~~~V~qaLi~rGVigD~-----------------------R~P~vlRfgftPlY~~~~DVw~AV~~L~evL 400 (407)
T COG3844 348 LYHPHGYQVMQALIDRGVIGDF-----------------------REPDVLRFGFTPLYVSFVDVWDAVDALEEVL 400 (407)
T ss_pred EecCcHHHHHHHHHHcCccccc-----------------------cCCCeeeecCccceechhHHHHHHHHHHHHH
Confidence 7777888888888 6766431 12388999986 5999999999999999864
|
|
| >PRK07309 aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.6e-20 Score=239.31 Aligned_cols=313 Identities=14% Similarity=0.137 Sum_probs=216.9
Q ss_pred CCCHHHHHHHHHHHhhh-cCCCCCCCcchhhhHHHHHHHHHHHHHHHh----CC--C-CCcEEEeCCHHHHHHHHHHhcc
Q psy15216 8 PIDPRVVDKMIPYLRVQ-FGNPASRNHIYGWTAEKAIEKARNEVAQLI----YA--D-PREIIWTSGATESNNLAIKGAA 79 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~-~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~----g~--~-~~~Iv~t~g~T~al~~~~~~l~ 79 (2602)
++|+.+.+++.+.+... ..++.. ....++|+++++++ |. + +++|++|+|+++|+++++.++.
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~Y~~~----------~g~~~lr~~ia~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~ 112 (391)
T PRK07309 43 TTPDHVKEAAKRAIDANQSHYTGM----------AGLLELRQAAADFVKEKYNLDYAPENEILVTIGATEALSASLTAIL 112 (391)
T ss_pred CCCHHHHHHHHHHHhcCCCCCCCC----------CCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhc
Confidence 34667778888776531 112111 11345566666655 44 3 3689999999999999999887
Q ss_pred cccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCC-CCccChHHHHhhccC---CceEEEEecccCccccccc-
Q psy15216 80 HFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NGLITLSQLEEKICS---DTILVSVMLVNNEIGVIQP- 154 (2602)
Q Consensus 80 ~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~-~~~ld~e~l~~~i~~---~tklv~i~~~~npTG~~~~- 154 (2602)
++||+|++++|.|+.+...++.. |++++.++.++ ++.+|++.++++++. +++++++++|+||||.+++
T Consensus 113 ----~~gd~vl~~~p~y~~~~~~~~~~---g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~i~l~~P~NPtG~~~s~ 185 (391)
T PRK07309 113 ----EPGDKVLLPAPAYPGYEPIVNLV---GAEIVEIDTTENDFVLTPEMLEKAILEQGDKLKAVILNYPANPTGVTYSR 185 (391)
T ss_pred ----CCCCEEEEeCCCCcchHHHHHHc---CCEEEEEecCCcCCcCCHHHHHHHhhccCCCeEEEEEECCCCCCCcCcCH
Confidence 79999999999999987766655 99999998765 356899999999863 6899999999999999998
Q ss_pred --HHHHHHHHHhcCCEEEEeccccccc----ccccCCCC--CccEEEeccccccCCCC--cEEEEEecCCCCcccceecC
Q psy15216 155 --ILEIGELCRSKGVIFHCDAAQAVGK----IDINIQNY--KVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHG 224 (2602)
Q Consensus 155 --l~~I~~la~~~g~~livD~a~a~g~----~~~dl~~~--~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g 224 (2602)
+++|+++|++||+++|+|++++.-. ...++... ...+++.|+||.+|++| +||+++++++++.+....
T Consensus 186 ~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRvG~~v~~~~~~~~~~~~~-- 263 (391)
T PRK07309 186 EQIKALADVLKKYDIFVISDEVYSELTYTGEPHVSIAEYLPDQTILINGLSKSHAMTGWRIGLIFAPAEFTAQLIKSH-- 263 (391)
T ss_pred HHHHHHHHHHHHcCcEEEEEccccceeeCCCCCCCHHHhccCCEEEEecChhhccCccceeEEEEeCHHHHHHHHHHH--
Confidence 7778888999999999999986422 11122111 23478889999999888 899999988777665322
Q ss_pred CCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc-c--
Q psy15216 225 GGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-I-- 301 (2602)
Q Consensus 225 ~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~-~-- 301 (2602)
.+...+++.....++..+++.........++++.+.++++.+.|.+ . ++.+..+... ...++.++. .
T Consensus 264 -----~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~-~-~~~~~~p~gg---~~~~~~l~~~~~~ 333 (391)
T PRK07309 264 -----QYLVTAATTMAQFAAVEALTNGKDDALPMKKEYIKRRDYIIEKMTD-L-GFKIIKPDGA---FYIFAKIPAGYNQ 333 (391)
T ss_pred -----hhcccCCChHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHH-C-CCeecCCCee---EEEEEECCCCCCC
Confidence 1112234555555555556521122345566777788888888877 3 6665543221 122233332 1
Q ss_pred ChhHHHHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 302 EGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 302 ~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
+..++...+ +||.+.+|..+.+. .++++||+++. +.++++.++++|++
T Consensus 334 ~~~~~~~~l~~~~gv~v~pg~~f~~~-----------------~~~~iRi~~~~--~~~~l~~~i~~l~~ 384 (391)
T PRK07309 334 DSFKFLQDFARKKAVAFIPGAAFGPY-----------------GEGYVRLSYAA--SMETIKEAMKRLKE 384 (391)
T ss_pred CHHHHHHHHHHhCCEEEeCchhhCCC-----------------CCCEEEEEecC--CHHHHHHHHHHHHH
Confidence 344556543 69999998766432 13799999984 67899999999985
|
|
| >PRK06107 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.1e-20 Score=241.49 Aligned_cols=316 Identities=12% Similarity=0.023 Sum_probs=222.9
Q ss_pred CCCHHHHHHHHHHHhhh-cCCCCCCCcchhhhHHHHHHHHHHHHHHHhCC--CCCcEEEeCCHHHHHHHHHHhccccccc
Q psy15216 8 PIDPRVVDKMIPYLRVQ-FGNPASRNHIYGWTAEKAIEKARNEVAQLIYA--DPREIIWTSGATESNNLAIKGAAHFYKK 84 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~-~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~--~~~~Iv~t~g~T~al~~~~~~l~~~~~~ 84 (2602)
++++.+.+++.+.+... ..|+. ......+.+.+.+.+++.+|. ++++|++|+|+++|++.++.++. +
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~Y~~------~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~~~----~ 115 (402)
T PRK06107 46 DTPDHIKQAAVAAIERGETKYTL------VNGTPALRKAIIAKLERRNGLHYADNEITVGGGAKQAIFLALMATL----E 115 (402)
T ss_pred CCCHHHHHHHHHHHHcCCCCCCC------CCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHhc----C
Confidence 34677888888877531 11221 112234556666666666676 67899999999999999998876 8
Q ss_pred CCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCC--CCccChHHHHhhccCCceEEEEecccCcccccccH---HHHH
Q psy15216 85 RGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPI---LEIG 159 (2602)
Q Consensus 85 ~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l---~~I~ 159 (2602)
+||.|++++|.|+.+...+... +..++.++.+. ++.+|+++++++++++++++++++|+||||..+|. ++|+
T Consensus 116 ~gd~vl~~~p~y~~y~~~~~~~---~~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~s~~~~~~l~ 192 (402)
T PRK06107 116 AGDEVIIPAPYWVSYPDMVLAN---DGTPVIVACPEEQGFKLTPEALEAAITPRTRWLILNAPSNPTGAVYSRAELRALA 192 (402)
T ss_pred CCCEEEEecCCCcCHHHHHHHc---CCEEEEecCCcccCCCCCHHHHHhhcCcCceEEEEECCCCCCCcCcCHHHHHHHH
Confidence 9999999999999987665544 77777887753 45689999999999899999999999999999985 5667
Q ss_pred HHHHhc-CCEEEEecccccc---ccc-ccCCC-----CCccEEEeccccccCCCC--cEEEEEecCCCCcccceecCCCc
Q psy15216 160 ELCRSK-GVIFHCDAAQAVG---KID-INIQN-----YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGH 227 (2602)
Q Consensus 160 ~la~~~-g~~livD~a~a~g---~~~-~dl~~-----~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g~~~ 227 (2602)
++|++| ++++|+|++++.- ..+ ..+.. ...-+++.|+||.||++| +||+++++++++.+.....
T Consensus 193 ~~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~~~~~~~~~~~~~~~~---- 268 (402)
T PRK06107 193 DVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPELRDRVLVTNGVSKTYAMTGWRIGYAAGPADLIAAINKLQS---- 268 (402)
T ss_pred HHHHHcCCeEEEEehhccccccCCCCCCCHHHhCcCccCCEEEEeccchhhcCcccceeeeecCHHHHHHHHHHHH----
Confidence 788898 9999999988521 101 11111 123477789999989888 7999999887776654331
Q ss_pred cccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc-------
Q psy15216 228 EYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF------- 300 (2602)
Q Consensus 228 ~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~------- 300 (2602)
....+++.....++..+|+-...+++..+.++.+.++.+.+.|.+ ++++.+..+... ...++.++.
T Consensus 269 ---~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~-~~g~~~~~p~gg---~~~~~~~~~~~~~~~~ 341 (402)
T PRK06107 269 ---QSSSCPSSISQAAAAAALNGDQSFVTESVAVYKQRRDYALALLNA-IPGLSCLVPDGA---FYLYVNCAGLIGKTTP 341 (402)
T ss_pred ---hcccCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHhc-CCCCcccCCCcc---eEEeeecccccccccc
Confidence 112345666666666666522345677788888889999999977 567665543221 122222311
Q ss_pred -----cChhHHHHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 301 -----IEGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 301 -----~~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
.+..+++..+ +||.+.+|..|.. .+++||+++. +.+++++.++.|++
T Consensus 342 ~~~~~~~~~~~~~~l~~~~gv~v~pg~~Fg~-------------------~~~iRis~~~--~~e~l~~~l~~l~~ 396 (402)
T PRK06107 342 EGKVLETDQDVVLYLLDSAGVAVVQGTAYGL-------------------SPYFRLSIAT--SLETLEEACARIER 396 (402)
T ss_pred cccCCCCHHHHHHHHHHhCCEEEeCccccCC-------------------CCeEEEEeCC--CHHHHHHHHHHHHH
Confidence 1334555554 6999999876632 2799999994 78999999999885
|
|
| >PRK06290 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.3e-20 Score=238.53 Aligned_cols=311 Identities=15% Similarity=0.086 Sum_probs=218.0
Q ss_pred CCCCHHHHHHHHHHHhh--ccCCCCCccchhHHHHHHHHHHHHHHHHHHh----C---CCCC-cEEEeCCHHHHHHHHHH
Q psy15216 1403 TPIDPRVVDKMIPYLRV--QFGNPASRNHIYGWTAEKAIEKARNEVAQLI----Y---ADPR-EIIWTSGATESNNLAIK 1472 (2602)
Q Consensus 1403 ~~~~~~v~eal~~~l~~--~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~----g---~~~~-~iv~t~gaT~al~~al~ 1472 (2602)
...++.+.+++.+.+.. ..++|.. ...++|+++++++ | ++++ +|++|+|+++++..++.
T Consensus 56 ~~~~~~~~~~l~~~~~~~~~~~Y~~~-----------G~~~lr~aia~~~~~~~g~~~~~~~~~I~it~Gs~~al~~~~~ 124 (410)
T PRK06290 56 EMADESVVEVLCEEAKKPENRGYADN-----------GIQEFKEAAARYMEKVFGVKDIDPVTEVIHSIGSKPALAMLPS 124 (410)
T ss_pred CCCCHHHHHHHHHHHhCCCCCCCCCC-----------CcHHHHHHHHHHHHHHcCCCcCCCcceEEEccCHHHHHHHHHH
Confidence 34566788888776542 1223322 2456777777775 4 5565 79999999999999999
Q ss_pred hhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCC--CCCcChhHHHhhccCCceEEEEeccccccccccC
Q psy15216 1473 GAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP 1550 (2602)
Q Consensus 1473 ~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~ 1550 (2602)
++. ++||+|++++|.|+.+....+.. |++++.++.+. ++.+|++++++++.+++++|++++|+||||.+++
T Consensus 125 ~~~----~~gd~Vlv~~P~y~~~~~~~~~~---g~~v~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~nP~NPTG~v~s 197 (410)
T PRK06290 125 CFI----NPGDVTLMTVPGYPVTGTHTKYY---GGEVYNLPLLEENNFLPDLDSIPKDIKEKAKLLYLNYPNNPTGAVAT 197 (410)
T ss_pred HhC----CCCCEEEEeCCCCccHHHHHHHc---CCEEEEEecCCCcCCcCCHHHHHHhhcccceEEEEECCCCCCCcCCC
Confidence 887 89999999999999987766655 99999999875 3557999999999989999999999999999999
Q ss_pred ---hHHHHHHhhhcCCEEEEecccccCc---cccc---CCC-CCccEEEEccccccCCCc--eEEEEEecCCCCcccccc
Q psy15216 1551 ---ILEIGELCRSKGVIFHCDAAQAVGK---IDIN---IQN-YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQI 1618 (2602)
Q Consensus 1551 ---l~~I~~ia~~~gi~vivD~a~~~g~---~~~~---l~~-~~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~ 1618 (2602)
+++|.++|++||+++|+|++|+... .+.. +.. .+..+++.|++|.+|++| +||++.++++++.+....
T Consensus 198 ~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~~~~s~~~~~~~~~~~I~i~SfSK~~g~~GlRiG~ii~~~~l~~~l~~~~ 277 (410)
T PRK06290 198 KEFYEEVVDFAKENNIIVVQDAAYAALTFDGKPLSFLSVPGAKEVGVEIHSLSKAYNMTGWRLAFVVGNELIVKAFATVK 277 (410)
T ss_pred HHHHHHHHHHHHHcCeEEEEecchhhceeCCCCcChhcCCCccccEEEEeechhhcCCchhheEeEEeCHHHHHHHHHHH
Confidence 6788888999999999999986421 1112 111 234688899999888888 899999887766654332
Q ss_pred ccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEec--
Q psy15216 1619 HGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-- 1696 (2602)
Q Consensus 1619 ~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~-- 1696 (2602)
. .. ..+.+.+.+.++..+|.. ....++.++++.+.++++++.|.+ . ++.+..+... -...+.++.
T Consensus 278 ~------~~-~~~~~~~~q~aa~~~l~~-~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~p~g~---f~l~v~lp~~~ 344 (410)
T PRK06290 278 D------NN-DSGQFIAIQKAGIYALDH-PEITEKIREKYSRRLDKLVKILNE-V-GFKAEMPGGT---FYLYVKAPKGT 344 (410)
T ss_pred h------cc-ccCCcHHHHHHHHHHhhC-cHHHHHHHHHHHHHHHHHHHHHHh-C-CCeecCCCee---eEEEEECCCcc
Confidence 1 01 112223344444455542 134567788888899999999987 3 6655432111 111122332
Q ss_pred ------CCcHHHHHhc--C-CEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCC-CCCHHHHHHHHHHHHHh
Q psy15216 1697 ------IEGESLLMAI--K-DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGR-FTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1697 ------~~~~~~~~~L--~-gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~-~~t~edid~li~~L~~~ 1765 (2602)
.+..++...| + ++.+.+|..+ .+++||+++. ..++++.++++++|++.
T Consensus 345 ~~~~~~~~~~~~~~~Ll~~~~v~~~p~~~~---------------------~~~lRi~~~~~~~~~~~~~~~~~~l~~~ 402 (410)
T PRK06290 345 KSGIKFENAEEFSQYLIKEKLISTVPWDDA---------------------GHFLRFSVTFEAKDEEEEDRILEEIKRR 402 (410)
T ss_pred ccCCCCCCHHHHHHHHHHhCCEEEECCccc---------------------cCeEEEEEEcccccccchhHHHHHHHHH
Confidence 1345666666 3 4565555432 1689999874 45889999999999874
|
|
| >PRK07550 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.6e-20 Score=242.60 Aligned_cols=316 Identities=15% Similarity=0.097 Sum_probs=221.2
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHh----C--CCCCcEEEeCCHHHHHHHHHHhcccc
Q psy15216 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI----Y--ADPREIIWTSGATESNNLAIKGAAHF 81 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~----g--~~~~~Iv~t~g~T~al~~~~~~l~~~ 81 (2602)
++++.+.+++.+.+.. +....|... ....++|+++++++ | .++++|++|+|+++|+.+++.++.
T Consensus 42 ~~~~~~~~~~~~~~~~----~~~~~Y~~~----~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~-- 111 (386)
T PRK07550 42 PPPPELLRALAEAAAD----PAAHLYGPV----EGLPELREAYAAHYSRLYGAAISPEQVHITSGCNQAFWAAMVTLA-- 111 (386)
T ss_pred CCCHHHHHHHHHHHhC----cCCcCCCCC----CCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHhc--
Confidence 4466777777766532 111011111 12344555555544 4 467899999999999999999987
Q ss_pred cccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCC--CCccChHHHHhhccCCceEEEEecccCccccccc---HH
Q psy15216 82 YKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---IL 156 (2602)
Q Consensus 82 ~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~---l~ 156 (2602)
++||.|+++.|.|+.+...++. .|++++.++.++ ++.+|+++++++++++++++++++||||||.++| ++
T Consensus 112 --~~gd~Vlv~~p~y~~~~~~~~~---~g~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~P~NPtG~~~~~~~~~ 186 (386)
T PRK07550 112 --GAGDEVILPLPWYFNHKMWLDM---LGIRPVYLPCDEGPGLLPDPAAAEALITPRTRAIALVTPNNPTGVVYPPELLH 186 (386)
T ss_pred --CCCCEEEEcCCCCcchHHHHHh---cCCEEEEEecCCCcCCCCCHHHHHHHhcccCcEEEEeCCCCCCCcccCHHHHH
Confidence 7999999999999988766554 499999999864 4568999999999999999999999999999998 67
Q ss_pred HHHHHHHhcCCEEEEeccccccc----ccccC---CCCC-ccEEEeccccccCCCC--cEEEEEecCCCCcccceecCCC
Q psy15216 157 EIGELCRSKGVIFHCDAAQAVGK----IDINI---QNYK-VDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGG 226 (2602)
Q Consensus 157 ~I~~la~~~g~~livD~a~a~g~----~~~dl---~~~~-~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g~~ 226 (2602)
+|+++|++||+++|+|++++... .+..+ ...+ ..+++.|++|.+|++| +||++++++++..+.....
T Consensus 187 ~i~~~~~~~~~~iI~Dd~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~--- 263 (386)
T PRK07550 187 ELYDLARRHGIALILDETYRDFDSGGGAPHDLFADPDWDDTLVHLYSFSKSYALTGHRVGAVVASPARIAEIEKFMD--- 263 (386)
T ss_pred HHHHHHHHcCeEEEEeccchhhccCCCCCcchhhCCCccccEEEEecchhhccCcccceEeeecCHHHHHHHHHHHh---
Confidence 88999999999999999975321 11111 1112 2467889999888777 8999998877666654331
Q ss_pred ccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEc--ccChh
Q psy15216 227 HEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN--FIEGE 304 (2602)
Q Consensus 227 ~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~--~~~~~ 304 (2602)
....+++..+..++..+++....+.++.++++.+.++.+.+.|.. .+++.+. +. .....++.++ ..+..
T Consensus 264 ----~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~-~~---g~~~~~~~~~~~~~~~~ 334 (386)
T PRK07550 264 ----TVAICAPRIGQIAVAWGLPNLADWRAGNRAEIARRRDAFRAVFAR-LPGWELL-AS---GAYFAYVRHPFPDRPSR 334 (386)
T ss_pred ----hcccCCCcHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHh-CCCceeC-CC---ceEEEEecCCCCCCCHH
Confidence 112234555555566666644456667777888888899999877 4555443 11 1122333334 24567
Q ss_pred HHHHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 305 SLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 305 ~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
++...| +||.+.+|..|... ..+++||+++. .++++++.+++.|++
T Consensus 335 ~l~~~l~~~~gv~v~pg~~f~~~-----------------~~~~iRis~~~-~~~~~~~~~~~~l~~ 383 (386)
T PRK07550 335 EVARRLAKEAGILCLPGTMFGPG-----------------QEGYLRLAFAN-ADVAGIGELVERLRA 383 (386)
T ss_pred HHHHHHHHhcCEEEeCchhhCCC-----------------CCCEEEEEeec-CCHHHHHHHHHHHHh
Confidence 777765 59999998876421 13789999974 468999999999985
|
|
| >PTZ00433 tyrosine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.2e-20 Score=242.01 Aligned_cols=311 Identities=13% Similarity=0.111 Sum_probs=219.0
Q ss_pred CCCHHHHHHHHHHHhh--ccCCCCCccchhHHHHHHHHHHHHHHHHHHhC------------CCCCcEEEeCCHHHHHHH
Q psy15216 1404 PIDPRVVDKMIPYLRV--QFGNPASRNHIYGWTAEKAIEKARNEVAQLIY------------ADPREIIWTSGATESNNL 1469 (2602)
Q Consensus 1404 ~~~~~v~eal~~~l~~--~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g------------~~~~~iv~t~gaT~al~~ 1469 (2602)
.+++.+.+++.+.+.. ...|+.. ....++|++++++++ +++++|++|+|+++++.+
T Consensus 50 ~p~~~~~~a~~~~~~~~~~~~Y~~~----------~G~~~Lr~aia~~~~~~~~~~~~~~~~~~~~~i~it~G~~~al~~ 119 (412)
T PTZ00433 50 LTPAIQTKALVEAVDSQECNGYPPT----------VGSPEAREAVATYWRNSFVHKESLKSTIKKDNVVLCSGVSHAILM 119 (412)
T ss_pred CCCHHHHHHHHHHhhcCCCCCCCCC----------CCcHHHHHHHHHHHHhhccccccccCCCChhhEEEeCChHHHHHH
Confidence 4577888888887764 2223322 124678888888875 567899999999999999
Q ss_pred HHHhhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCC--CCCcChhHHHhhccCCceEEEEecccccccc
Q psy15216 1470 AIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGV 1547 (2602)
Q Consensus 1470 al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~ 1547 (2602)
++.++. ++||+|+++.|+|+.+...+... |++++.++.++ ++.+|++++++++++++++|++++|+||||.
T Consensus 120 ~~~~~~----~~gd~vlv~~P~y~~~~~~~~~~---g~~~~~i~~~~~~~~~~d~~~l~~~~~~~~~~i~~~~p~NPtG~ 192 (412)
T PTZ00433 120 ALTALC----DEGDNILVPAPGFPHYETVCKAY---GIEMRFYNCRPEKDWEADLDEIRRLVDDRTKALIMTNPSNPCGS 192 (412)
T ss_pred HHHHhc----CCCCEEEEccCCcccHHHHHHHc---CCEEEEEecCccccCcCCHHHHHHHhccCceEEEEeCCCCCCCc
Confidence 999887 89999999999999987766555 99999998864 4679999999999999999999999999999
Q ss_pred ccC---hHHHHHHhhhcCCEEEEecccccCc---cc-c---cCCCCCccEEEEccccccCCCc--eEEEEEe-c-----C
Q psy15216 1548 IQP---ILEIGELCRSKGVIFHCDAAQAVGK---ID-I---NIQNYKVDLMSFSAHKIYGPKG--IGALYIR-R-----N 1609 (2602)
Q Consensus 1548 ~~~---l~~I~~ia~~~gi~vivD~a~~~g~---~~-~---~l~~~~~D~~v~S~~K~~gp~G--~G~l~~~-~-----~ 1609 (2602)
+++ +++|+++|++||+++|+|+++..-. .+ . .+.....-+++.||+|.+|++| +||+++. + +
T Consensus 193 ~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pGlRlG~~i~~~p~~~~~~ 272 (412)
T PTZ00433 193 NFSRKHVEDIIRLCEELRLPLISDEIYAGMVFNGATFTSVADFDTTVPRVILGGTAKNLVVPGWRLGWLLLVDPHGNGGD 272 (412)
T ss_pred ccCHHHHHHHHHHHHHcCCeEEEeccccccccCCCCccchhhccCCCceEEEccchhhcCCCCeeEEEEEEeCCcccHHH
Confidence 998 6677889999999999999985311 01 1 1211112477889999888888 8999973 2 1
Q ss_pred CCCccccccccCCccccCCCCCcchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCc
Q psy15216 1610 PRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRL-ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPH 1688 (2602)
Q Consensus 1610 ~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~-~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~ 1688 (2602)
+++.+.... ....+.+...+.++..++.. ....+++.++++++.++.+.+.|.+ ..++.+..+.. ..
T Consensus 273 ~~~~~~~~~--------~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~-~~~~~~~~p~g---g~ 340 (412)
T PTZ00433 273 FLDGMKRLG--------MLVCGPCSVVQAALGEALLNTPQEHLEQIVAKLEEGAMVLYNHIGE-CIGLSPTMPRG---SM 340 (412)
T ss_pred HHHHHHHHh--------hccCCCChHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhc-CCCCcccCCCe---eE
Confidence 222222111 01123444445555455542 2345777888888899999999976 44554332211 11
Q ss_pred eEEEEEec------CCcHHHHHhc---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHH
Q psy15216 1689 NLNISFNF------IEGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTI 1759 (2602)
Q Consensus 1689 ~~~~~~~~------~~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li 1759 (2602)
...+.++. .+..++...| +||.+++|..|... +++|++++. ..+++++.+
T Consensus 341 f~~~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~-------------------~~iRis~~~--~~e~l~~al 399 (412)
T PTZ00433 341 FLMSRLDLEKFRDIKSDVEFYEKLLEEENVQVLPGEIFHMP-------------------GFTRLTISR--PVEVLREAV 399 (412)
T ss_pred EEEEEechhhcCCCCCHHHHHHHHHHhcCEEEeCccccCCC-------------------CeEEEEecC--CHHHHHHHH
Confidence 11222332 1345566554 59999999877432 799999984 578899999
Q ss_pred HHHHH
Q psy15216 1760 KLLKM 1764 (2602)
Q Consensus 1760 ~~L~~ 1764 (2602)
++|.+
T Consensus 400 ~~l~~ 404 (412)
T PTZ00433 400 ERIKA 404 (412)
T ss_pred HHHHH
Confidence 99886
|
|
| >cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn) | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.4e-20 Score=241.03 Aligned_cols=312 Identities=18% Similarity=0.152 Sum_probs=217.1
Q ss_pred HHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCC-
Q psy15216 42 AIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN- 120 (2602)
Q Consensus 42 ~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~- 120 (2602)
...++++.+++++|. +++++++|+|+|++.++.++. +++||+|+++.++|+++..++... |++++++++++
T Consensus 19 ~~~~~~~~la~~~~~--~~~~~~~sgt~al~~~l~~l~---~~~gd~vl~~~~~~~~~~~~~~~~---g~~~~~~~~~~~ 90 (352)
T cd00616 19 KVREFEKAFAEYLGV--KYAVAVSSGTAALHLALRALG---IGPGDEVIVPSFTFVATANAILLL---GATPVFVDIDPD 90 (352)
T ss_pred HHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHHHcC---CCCCCEEEeCCcchHHHHHHHHHc---CCeEEEEecCCC
Confidence 578899999999996 378889999999999999984 379999999999999988777654 99999999887
Q ss_pred CCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHhcCCEEEEecccccccccccC-CCCCccEEEeccc--
Q psy15216 121 NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINI-QNYKVDLMSFSAH-- 197 (2602)
Q Consensus 121 ~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~~g~~livD~a~a~g~~~~dl-~~~~~D~~~~S~~-- 197 (2602)
++.+|++++++++++++++|+++| ++|.+.|+++|.++|+++|+++|+|++|++|....+. .....|+.++|+|
T Consensus 91 ~~~~d~~~l~~~i~~~~~~v~~~~---~~G~~~~~~~i~~l~~~~~i~li~D~a~~~g~~~~~~~~~~~~d~~~~S~~~~ 167 (352)
T cd00616 91 TYNIDPELIEAAITPRTKAIIPVH---LYGNPADMDAIMAIAKRHGLPVIEDAAQALGATYKGRKVGTFGDAGAFSFHPT 167 (352)
T ss_pred cCCcCHHHHHHhcCcCCeEEEEEC---CCCCcCCHHHHHHHHHHcCCeEEEECCCCCCCeECCEEcccCcceeEEcCCCC
Confidence 788999999999999999999876 5999999999999999999999999999988754321 0112478888876
Q ss_pred cccCCCCcEEEEEec-CCCCcccceecCCCccc--cccccCcch-hHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHH
Q psy15216 198 KIYGPKGIGALYIRR-NPRTRIEAQIHGGGHEY--GLRSGTLAT-HQIVGMGEAFRL-ARIEMKEELKRILFLQKRLYNG 272 (2602)
Q Consensus 198 K~~Gp~G~G~l~~~~-~~~~~l~~~~~g~~~~~--~~~~gt~~~-~~~~al~~al~~-~~~~~~~~~~~~~~l~~~l~~~ 272 (2602)
|+++....|+++.++ ++.+++++...++.... .+...++++ ..+..+.+++.. ....+++..++.+++.+++++.
T Consensus 168 K~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~l~~~~~~~~~~~~~~~~~~~~ 247 (352)
T cd00616 168 KNLTTGEGGAVVTNDEELAERARLLRNHGRDRDRFKYEHEILGYNYRLSEIQAAIGLAQLEKLDEIIARRREIAERYKEL 247 (352)
T ss_pred CCCcccCceEEEECCHHHHHHHHHHHHcCCCCCCCccccceeeeccCcCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 877533347777764 55555554332222111 011111110 011111222221 2234678888999999999999
Q ss_pred HhhccCceEEeCCCCC--CCCceEEEEEc---ccChhHHHHHh--CCeEEcccccCCCCCCChHHHHH------HcCCCc
Q psy15216 273 LMESIEEIYINGDMNN--RIPHNLNISFN---FIEGESLLMAI--KDIAVSSGSACTSASLEPSYVLR------ALGCND 339 (2602)
Q Consensus 273 L~~~~~g~~l~~~~~~--~~~~~~~~~~~---~~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~------~~g~~~ 339 (2602)
|.+ +++++++.++.. ..+..+.+.++ ..+..++.+.| +||.+ +..|.+....+.+... .+...+
T Consensus 248 L~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~gI~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 324 (352)
T cd00616 248 LAD-LPGIRLPDVPPGVKHSYHLYVIRLDPEAGESRDELIEALKEAGIET--RVHYPPLHHQPPYKKLLGYPPGDLPNAE 324 (352)
T ss_pred hcC-CCCccCCCCCCCCceeeEEEEEEECCcCCCCHHHHHHHHHHCCCCe--eeecCccccCHhhhhccCCCcCCChHHH
Confidence 987 789888765432 23344555555 45677888888 67755 4555554332211100 011111
Q ss_pred cCCCCeEEEecCCCCCHHHHHHHHHHHH
Q psy15216 340 ELAHSSIRFTIGRFTTEKEIDFTIKLLK 367 (2602)
Q Consensus 340 ~~~~~~iRis~~~~~t~edid~li~~L~ 367 (2602)
....+.||++++.++|++||++++++|+
T Consensus 325 ~~~~~~l~l~~~~~~t~~di~~i~~~l~ 352 (352)
T cd00616 325 DLAERVLSLPLHPSLTEEEIDRVIEALR 352 (352)
T ss_pred HHHhCeEEccCCCCCCHHHHHHHHHHhC
Confidence 2234789999999999999999999885
|
AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein |
| >PRK14809 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.9e-20 Score=236.68 Aligned_cols=301 Identities=12% Similarity=0.072 Sum_probs=213.6
Q ss_pred CCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccC
Q psy15216 1402 TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKR 1481 (2602)
Q Consensus 1402 ~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~ 1481 (2602)
...+++.+.+++.+.++....+|.. ...++|+.+++++++++++|++|+|+++++++++.++. ++
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~Y~~~-----------~~~~lr~~ia~~~~~~~~~I~it~G~~~al~~~~~~~~----~~ 105 (357)
T PRK14809 41 PHGPSPAAVEAIREAAERVHSYPKA-----------SHADLTAALADRWDVSPEQVWLANGGDGALDYLARAML----DP 105 (357)
T ss_pred CCCCCHHHHHHHHHHHhhhhcCCCC-----------CHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHhc----CC
Confidence 3466778888888877654445543 14579999999999999999999999999999999887 89
Q ss_pred CCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCC--CCCcChhHHHhhccCCceEEEEeccccccccccChHHHHHHhh
Q psy15216 1482 GKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCR 1559 (2602)
Q Consensus 1482 gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~~ia~ 1559 (2602)
||+|++++|.|+.+...... .|+.++.++++. ++.++.+++.+.+ +++++|++++|+||||.++|.+++.++++
T Consensus 106 gd~V~v~~P~y~~~~~~~~~---~g~~~~~~~l~~~~~~~~~~~~~~~~~-~~~k~i~l~~p~NPTG~~~s~~~~~~l~~ 181 (357)
T PRK14809 106 GDTVLVPDPGFAYYGMSARY---HHGEVREYPVSKADDFEQTADTVLDAY-DGERIVYLTSPHNPTGSEIPLDEVEALAE 181 (357)
T ss_pred CCEEEEeCCChHHHHHHHHH---cCCeEEEEecccCcCCCcCHHHHHHhh-cCCcEEEEeCCCCCCCcCCCHHHHHHHHH
Confidence 99999999999876654443 488898888753 4567888887766 46899999999999999999777777765
Q ss_pred hc--CCEEEEecccccCcc---ccc-CCCCCccEEEEccccccCCCc--eEEEEEecCCCCccccccccCCccccCCCCC
Q psy15216 1560 SK--GVIFHCDAAQAVGKI---DIN-IQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGT 1631 (2602)
Q Consensus 1560 ~~--gi~vivD~a~~~g~~---~~~-l~~~~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt 1631 (2602)
.. ++++|+|++|..-.. ... +...+.-+++.||+|.+|++| +||+++++++++.+.... ....
T Consensus 182 ~~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~~~~~~~~~~~~~~~~---------~~~~ 252 (357)
T PRK14809 182 RTDEETLVVVDEAYGEFAERPSAVALVEERDDVAVLRTFSKAYGLAGLRLGYAVVPEEWADAYARVN---------TPFA 252 (357)
T ss_pred hCccCcEEEEechhhhccCCchhHHHHhhCCCEEEEecchhHhcCcchhheeeecCHHHHHHHHHhC---------CCCC
Confidence 43 789999999863211 111 111123477789999998888 899999987766664321 1123
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecCCcHHHHHhc--CCE
Q psy15216 1632 LATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDI 1709 (2602)
Q Consensus 1632 ~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI 1709 (2602)
.+...+.+...+|.. ...+++.++.++..++++.+.|.. . .. + +.+.++++...+..++...| +||
T Consensus 253 ~~~~~~~~a~~~l~~-~~~~~~~~~~~~~~r~~l~~~L~~-~----~~-~-----~~g~f~~~~~~~~~~~~~~l~~~gv 320 (357)
T PRK14809 253 ASELACRAGLAALDD-DEHVERTVETARWAREYIREELDA-P----TW-E-----SAGNFVLAEVGDASAVAEAAQERGV 320 (357)
T ss_pred CCHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHhcC-c----cC-C-----CCCCEEEEECCCHHHHHHHHHHCCE
Confidence 333333333344432 334566677777778888887754 1 11 1 12223333333456666666 799
Q ss_pred EEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1710 AVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1710 ~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
.+++|..|..+ +++||+++ +.++++.++++|++
T Consensus 321 ~v~~g~~f~~~-------------------~~iRls~~---~~~~~~~~l~~L~~ 353 (357)
T PRK14809 321 IVRDCTSFGLP-------------------ECIRITCG---TREETERAVEVLNE 353 (357)
T ss_pred EEEECccCCCC-------------------CeEEEecC---CHHHHHHHHHHHHH
Confidence 99999876432 78999987 57999999999986
|
|
| >PRK09265 aminotransferase AlaT; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.3e-20 Score=240.20 Aligned_cols=317 Identities=14% Similarity=0.129 Sum_probs=215.6
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHh------CCCCCcEEEeCCHHHHHHHHHHhcccc
Q psy15216 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI------YADPREIIWTSGATESNNLAIKGAAHF 81 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~------g~~~~~Iv~t~g~T~al~~~~~~l~~~ 81 (2602)
++|+.+.+++.+.+.....|+.. ....++|+++|+++ ++++++|++|+|+++++.+++.++.
T Consensus 49 ~~~~~i~~~~~~~~~~~~~Y~~~----------~G~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~~l~~~~~~~~-- 116 (404)
T PRK09265 49 EAPDEILRDVIRNLPTAQGYSDS----------KGLFSARKAIMQYYQQKGIPDVDVDDIYIGNGVSELIVMAMQALL-- 116 (404)
T ss_pred CCCHHHHHHHHHHhhcCCCCCCC----------CCcHHHHHHHHHHHhccCCCCCCcccEEEeCChHHHHHHHHHHhC--
Confidence 37788888888766543333332 12356788888887 6788999999999999999999887
Q ss_pred cccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCC--CCccChHHHHhhccCCceEEEEecccCccccccc---HH
Q psy15216 82 YKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---IL 156 (2602)
Q Consensus 82 ~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~---l~ 156 (2602)
++||+|++++|+|+.+...+... |++++.++++. ++.+|++++++++.++++++++++|+||||.++| ++
T Consensus 117 --~~gd~Vlv~~p~y~~~~~~~~~~---g~~~v~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~P~NPtG~~~~~~~~~ 191 (404)
T PRK09265 117 --NNGDEVLVPAPDYPLWTAAVSLS---GGKPVHYLCDEEAGWFPDLDDIRSKITPRTKAIVIINPNNPTGAVYSKELLE 191 (404)
T ss_pred --CCCCEEEEeCCCCcChHHHHHHc---CCEEEEEecccccCCCCCHHHHHHhccccceEEEEECCCCCCCcCCCHHHHH
Confidence 89999999999999987777654 88888887653 4668999999999989999999999999999999 88
Q ss_pred HHHHHHHhcCCEEEEeccccccc----ccccCCCC--C-ccEEEeccccccCCCC--cEEEEEe--cCCCCcccceecCC
Q psy15216 157 EIGELCRSKGVIFHCDAAQAVGK----IDINIQNY--K-VDLMSFSAHKIYGPKG--IGALYIR--RNPRTRIEAQIHGG 225 (2602)
Q Consensus 157 ~I~~la~~~g~~livD~a~a~g~----~~~dl~~~--~-~D~~~~S~~K~~Gp~G--~G~l~~~--~~~~~~l~~~~~g~ 225 (2602)
+|.++|++||+++|+|++++.-. ....+... + .-+++.|++|.+|.+| +||++++ +.+.+.+......
T Consensus 192 ~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~v~~~~~~~~~~~~~~~~~- 270 (404)
T PRK09265 192 EIVEIARQHNLIIFADEIYDKILYDGAVHISIASLAPDLLCVTFNGLSKAYRVAGFRVGWMVLSGPKKHAKGYIEGLDM- 270 (404)
T ss_pred HHHHHHHHCCCEEEEehhhhhccCCCCCcCCHHHcCCCceEEEEecchhhccCcccceEEEEEeCchHHHHHHHHHHHH-
Confidence 88999999999999999975311 11111111 1 2356789999998888 7999974 2211111110000
Q ss_pred CccccccccCcchhHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEccc--
Q psy15216 226 GHEYGLRSGTLATHQIVGMGEAFRLARI--EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI-- 301 (2602)
Q Consensus 226 ~~~~~~~~gt~~~~~~~al~~al~~~~~--~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~-- 301 (2602)
......+++.++..++..+|..... .+.+...++.+.++++.+.|.+ .+++++..+.. ...+++.++..
T Consensus 271 ---~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~L~~-~~~~~~~~p~~---g~~l~~~~~~~~~ 343 (404)
T PRK09265 271 ---LASMRLCANVPAQHAIQTALGGYQSINELILPGGRLYEQRDRAWELLNA-IPGVSCVKPKG---ALYAFPKLDPKVY 343 (404)
T ss_pred ---HhccccCCCcHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHhc-CCCCcccCCCc---ceEEEEEeccccc
Confidence 0001123455555666666641111 1112224566678888888876 56766553322 12333334321
Q ss_pred ---ChhH-HHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 302 ---EGES-LLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 302 ---~~~~-~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
+..+ +...+ +||.+.+|..|... ..+++|++++ .++++++..+++|++
T Consensus 344 ~~~~~~~~~~~~l~~~gv~v~pg~~F~~~-----------------~~~~~Ri~~~--~~~e~l~~~l~rl~~ 397 (404)
T PRK09265 344 PIHDDEQFVLDLLLQEKVLLVQGTGFNWP-----------------EPDHFRIVTL--PRVDDLEEAIGRIGR 397 (404)
T ss_pred CCCCHHHHHHHHHHhCCEEEECchhhCCC-----------------CCCeEEEEeC--CCHHHHHHHHHHHHH
Confidence 2333 33333 79999998776321 1378999996 578999999999985
|
|
| >PRK07179 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.1e-20 Score=240.55 Aligned_cols=313 Identities=15% Similarity=0.214 Sum_probs=227.5
Q ss_pred CCHHHHHHHHHHHhhhcCCCCC-CCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCC
Q psy15216 9 IDPRVVDKMIPYLRVQFGNPAS-RNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK 87 (2602)
Q Consensus 9 ~p~~v~~a~~~~l~~~~~~p~~-~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd 87 (2602)
..|.+++++.+.+.....+++. ..+..+ .+...++++.+|+++|.+ .+++++|+++|+..++.++. .+||
T Consensus 69 ~~p~v~~a~~~~~~~~~~~~~~s~~~~~~---~~~~~~le~~la~~~g~~--~~~~~~sG~~An~~~l~~l~----~~g~ 139 (407)
T PRK07179 69 GHPDIIKAQIAALQEEGDSLVMSAVFLHD---DSPKPQFEKKLAAFTGFE--SCLLCQSGWAANVGLLQTIA----DPNT 139 (407)
T ss_pred CCHHHHHHHHHHHHHhCCCCCccccccCC---chHHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHhC----CCCC
Confidence 4688999999998775445532 122221 135677889999999975 56889999999999999988 7899
Q ss_pred EEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccC-CceEEEEecccCcccccccHHHHHHHHHhcC
Q psy15216 88 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS-DTILVSVMLVNNEIGVIQPILEIGELCRSKG 166 (2602)
Q Consensus 88 ~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~-~tklv~i~~~~npTG~~~~l~~I~~la~~~g 166 (2602)
.|+++.++|+++...+... |+++..++ ..|++++++++++ ++++|++++++||||.+.|+++|.++|++||
T Consensus 140 ~v~~~~~~h~s~~~~~~~~---g~~~~~~~-----~~d~~~l~~~l~~~~~~lV~v~~v~n~tG~i~pl~~I~~l~~~~~ 211 (407)
T PRK07179 140 PVYIDFFAHMSLWEGVRAA---GAQAHPFR-----HNDVDHLRRQIERHGPGIIVVDSVYSTTGTIAPLADIVDIAEEFG 211 (407)
T ss_pred EEEEECCcCHHHHHHHHHC---CCeEEEec-----CCCHHHHHHHHHhcCCeEEEECCCCCCCCccccHHHHHHHHHHcC
Confidence 9999999999987665544 77776654 2589999999976 5889999999999999999999999999999
Q ss_pred CEEEEeccccccccc---------ccCCCCCccEEEeccccccCCCCcEEEEEecCCCCcccceecCCCccccccccCcc
Q psy15216 167 VIFHCDAAQAVGKID---------INIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLA 237 (2602)
Q Consensus 167 ~~livD~a~a~g~~~---------~dl~~~~~D~~~~S~~K~~Gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~ 237 (2602)
+++|+|++|+.|... +++. .++|++++|+||.+|++ +|++++++++++.+..... .....++++
T Consensus 212 ~~livDea~~~g~~g~~g~g~~~~~~~~-~~vdi~~~S~sK~~g~~-~G~l~~~~~~~~~~~~~~~-----~~~~~~t~~ 284 (407)
T PRK07179 212 CVLVVDESHSLGTHGPQGAGLVAELGLT-SRVHFITASLAKAFAGR-AGIITCPRELAEYVPFVSY-----PAIFSSTLL 284 (407)
T ss_pred CEEEEECcccccCcCCCCCchHHhcCCC-CCCCEEEeechHhhhcc-CeEEEeCHHHHHHHHHhCc-----CeeeCCCCC
Confidence 999999999876432 1111 24689999999988875 7999998876555532110 012345666
Q ss_pred hhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEccc-ChhHHHHHh--CCeE
Q psy15216 238 THQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI-EGESLLMAI--KDIA 314 (2602)
Q Consensus 238 ~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~L--~gI~ 314 (2602)
...++++.++++.... .++.+++.+++++++++.|.+ + |+.+.+. ..++.+.++.. +...+.+.| +||.
T Consensus 285 ~~~~aa~~aal~~~~~-~~~~~~~l~~~~~~l~~~L~~-~-g~~v~~~-----~~i~~l~~~~~~~~~~~~~~L~~~GI~ 356 (407)
T PRK07179 285 PHEIAGLEATLEVIES-ADDRRARLHANARFLREGLSE-L-GYNIRSE-----SQIIALETGSERNTEVLRDALEERNVF 356 (407)
T ss_pred HHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHH-c-CCCCCCC-----CCEEEEEeCCHHHHHHHHHHHHHCCce
Confidence 6777777777875533 356788899999999999987 3 6655421 23344444321 334555555 7887
Q ss_pred EcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 315 VSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 315 v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
++ ..|.+.. ....+++||+++.++|++|+++++++|++.
T Consensus 357 ~~--~~~~p~~--------------~~~~~~lRis~~~~~t~edi~~~~~~l~~~ 395 (407)
T PRK07179 357 GA--VFCAPAT--------------PKNRNLIRLSLNADLTASDLDRVLEVCREA 395 (407)
T ss_pred Ee--eecCCCC--------------CCCCceEEEEECCCCCHHHHHHHHHHHHHH
Confidence 43 2233210 012378999999999999999999999863
|
|
| >PRK05166 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=5e-20 Score=238.24 Aligned_cols=313 Identities=14% Similarity=0.097 Sum_probs=220.2
Q ss_pred eeeeccC--CCCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHH
Q psy15216 1394 TNIVFKD--ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAI 1471 (2602)
Q Consensus 1394 ~~v~L~~--~~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al 1471 (2602)
+.+.++. +...+++.+.+++.+..+....+|+. .. .++|+++++++++++++|++|+|++++++.++
T Consensus 37 ~~i~l~~~~~~~~~~~~~~~al~~~~~~~~~Y~~~----------~g-~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~ 105 (371)
T PRK05166 37 RIAKLGSNENPLGPSPAVRRAFADIAELLRLYPDP----------QG-RALREAIAARTGVPADRIILGNGSEDLIAVIC 105 (371)
T ss_pred ceEEcCCCCCCCCCCHHHHHHHHHHHHHhhcCCCC----------cH-HHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHH
Confidence 4455542 22356778888887765444444443 11 36899999999999899999999999999999
Q ss_pred HhhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccCCceEEEEeccccccccccCh
Q psy15216 1472 KGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPI 1551 (2602)
Q Consensus 1472 ~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l 1551 (2602)
.++. ++||+|+++.|+|+.+....+. .|++++.++.++++.+|+++++++++++++++++++|+||||.++|.
T Consensus 106 ~~~~----~~gd~vli~~P~y~~~~~~~~~---~g~~~~~v~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~ 178 (371)
T PRK05166 106 RAVL----RPGDRVVTLYPSFPLHEDYPTM---MGARVERVTVTPDLGFDLDALCAAVARAPRMLMFSNPSNPVGSWLTA 178 (371)
T ss_pred HHhc----CCCCEEEEcCCChHHHHHHHHH---cCCeEEEeecCCCCCCCHHHHHHhhhcCCCEEEEeCCCCCCCCCCCH
Confidence 9886 8999999999999887655444 49999999998788899999999999999999999999999999997
Q ss_pred HHHHHHhhh--cCCEEEEecccccCcc----c--cc-CCCC-CccEEEEccccccCCCc--eEEEEEe-cCCCCcccccc
Q psy15216 1552 LEIGELCRS--KGVIFHCDAAQAVGKI----D--IN-IQNY-KVDLMSFSAHKIYGPKG--IGALYIR-RNPRTRIEAQI 1618 (2602)
Q Consensus 1552 ~~I~~ia~~--~gi~vivD~a~~~g~~----~--~~-l~~~-~~D~~v~S~~K~~gp~G--~G~l~~~-~~~~~~l~~~~ 1618 (2602)
+++.++++. +++++++|+++..-.. + +. +.+. ...+++.||+|.+|++| +||++++ +++.+.+....
T Consensus 179 ~~~~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~l~GlRiG~~i~~~~~l~~~~~~~~ 258 (371)
T PRK05166 179 DQLARVLDATPPETLIVVDEAYAEYAAGDDYPSALTLLKARGLPWIVLRTFSKAYGLAGLRVGYGLVSDPELVGLLDRVR 258 (371)
T ss_pred HHHHHHHHhCCCCcEEEEECcHHHhcCCcCcccHHHHHhhcCCCEEEEeechHhhhcchhheeeeecCCHHHHHHHHHhc
Confidence 777666653 4889999999753210 1 11 1111 12477889999988888 8998874 44444443221
Q ss_pred ccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEec-C
Q psy15216 1619 HGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-I 1697 (2602)
Q Consensus 1619 ~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~-~ 1697 (2602)
.....+...+.++..++.. ...+++.++.+++.++++.+.|.+ . ++.+. ++. ..++++.. .
T Consensus 259 ---------~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~r~~l~~~L~~-~-g~~~~-p~~-----g~fl~~~~~~ 320 (371)
T PRK05166 259 ---------TPFNVNGAAQAAALAALDD-EEHLAKGVALALAERERLKKELAE-M-GYRIA-PSR-----ANFLFFDARR 320 (371)
T ss_pred ---------cCCCCCHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHH-C-cCeeC-CCc-----CCEEEEeCCC
Confidence 0112344444444455542 244677777888888999999987 3 55543 222 12334432 2
Q ss_pred CcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1698 EGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1698 ~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
+..++...| +||.+++|..+.. .+++||+++ +.++.++++++|++
T Consensus 321 ~~~~l~~~l~~~gi~v~p~~~~~~-------------------~~~iRi~~~---~~~~~~~l~~~l~~ 367 (371)
T PRK05166 321 PASAVAEALLRQGVIVKPWKQPGF-------------------ETFIRVSIG---SPEENDHFVAALDK 367 (371)
T ss_pred CHHHHHHHHHHCCeEEecCCCCCC-------------------CCeEEEEcC---CHHHHHHHHHHHHH
Confidence 445666665 8999998754221 279999998 67889999999875
|
|
| >TIGR00858 bioF 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.7e-20 Score=239.31 Aligned_cols=315 Identities=18% Similarity=0.155 Sum_probs=222.0
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCC
Q psy15216 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK 87 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd 87 (2602)
+.++.+.+++.+++... +.... .+...+...+...++++.++++++. ++.+++++| ++++..++.++. ++||
T Consensus 30 ~~~~~v~~a~~~~~~~~-~~~~~-~~~~~~g~~~~~~~l~~~la~~~~~-~~~i~~~~G-~~~~~~~l~~~~----~~gd 101 (360)
T TIGR00858 30 ASHPEVIQAAQQGAEQY-GAGST-ASRLVSGNSPLHEELEEELAEWKGT-EAALLFSSG-YLANVGVISALV----GKGD 101 (360)
T ss_pred CCCHHHHHHHHHHHHhc-CCCCC-CcCcccCCcHHHHHHHHHHHHHhCC-CCEEEECch-HHHHHHHHHHhC----CCCC
Confidence 45689999999988652 22111 1111122234678899999999985 456777776 455556667665 7999
Q ss_pred EEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccC----CceEEEEecccCcccccccHHHHHHHHH
Q psy15216 88 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS----DTILVSVMLVNNEIGVIQPILEIGELCR 163 (2602)
Q Consensus 88 ~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~----~tklv~i~~~~npTG~~~~l~~I~~la~ 163 (2602)
+|+++++.|+++...+... |++++.++. +|++++++.++. +++++++++++|+||...|+++|.++|+
T Consensus 102 ~v~~~~~~~~~~~~~~~~~---g~~~~~~~~-----~d~~~l~~~~~~~~~~~~~~v~~~~~~~~~G~~~~~~~i~~l~~ 173 (360)
T TIGR00858 102 LILSDALNHASLIDGCRLS---GARVRRYRH-----NDVEHLERLLEKNRGERRKLIVTDGVFSMDGDIAPLPQLVALAE 173 (360)
T ss_pred EEEEEccccHHHHHHHHhc---CCceEEecC-----CCHHHHHHHHHHcccCCCeEEEEeCCccCCCCCcCHHHHHHHHH
Confidence 9999999999987776654 888887763 588999988863 5789999999999999999999999999
Q ss_pred hcCCEEEEeccccccccccc---------CCCCCccEEEeccccccCCCCcEEEEEecCCCCcccceecCCCcccccccc
Q psy15216 164 SKGVIFHCDAAQAVGKIDIN---------IQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSG 234 (2602)
Q Consensus 164 ~~g~~livD~a~a~g~~~~d---------l~~~~~D~~~~S~~K~~Gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~g 234 (2602)
++|+++|+|++|+.+..+.+ +...+.++++.|+||++|++| ||++.++++.+.+.+.... .. ..+
T Consensus 174 ~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~g-G~~~~~~~~~~~~~~~~~~----~~-~~~ 247 (360)
T TIGR00858 174 RYGAWLMVDDAHGTGVLGEDGRGTLEHFGLKPEPVDIQVGTLSKALGSYG-AYVAGSQALIDYLINRART----LI-FST 247 (360)
T ss_pred HcCcEEEEECcccccCcCCCCCchHHhcCCCccCCcEEEEechhhhhccC-cEEEcCHHHHHHHHHhCcc----ce-ecC
Confidence 99999999999986543211 222356899999999999988 8999887766655432211 01 122
Q ss_pred CcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc-cChhHHHHHh--C
Q psy15216 235 TLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGESLLMAI--K 311 (2602)
Q Consensus 235 t~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~L--~ 311 (2602)
+.+..+++++.+++++... .++..++..++++++.+.|.+ + ++++..+. ..++.+.++. .+..++.+.| +
T Consensus 248 ~~~~~~~~a~~~al~~~~~-~~~~~~~~~~~~~~l~~~L~~-~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~ 320 (360)
T TIGR00858 248 ALPPAVAAAALAALELIQE-EPWRREKLLALIARLRAGLEA-L-GFTLMPSC----TPIVPVIIGDNASALALAEELQQQ 320 (360)
T ss_pred CCCHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHHHHH-c-CCccCCCC----CCEEEEEeCCHHHHHHHHHHHHHC
Confidence 3444556666677875443 356788999999999999987 3 55544221 1233344432 2345666666 7
Q ss_pred CeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHH
Q psy15216 312 DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK 367 (2602)
Q Consensus 312 gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~ 367 (2602)
||.+.++..+..+ ...+++||+++.+++++|+++++++|+
T Consensus 321 gI~v~~~~~~~~~----------------~~~~~iRis~~~~~~~~~i~~~l~~l~ 360 (360)
T TIGR00858 321 GIFVGAIRPPTVP----------------AGTSRLRLTLSAAHTPGDIDRLAEALK 360 (360)
T ss_pred CeeEeeeCCCCCC----------------CCCceEEEEEcCCCCHHHHHHHHHhhC
Confidence 9999865433211 012689999999999999999999874
|
This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model. |
| >PRK06358 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.5e-20 Score=234.07 Aligned_cols=303 Identities=17% Similarity=0.171 Sum_probs=221.1
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCC
Q psy15216 1404 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK 1483 (2602)
Q Consensus 1404 ~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd 1483 (2602)
..++.+.+++.+.+.....+|.. ...++|+++++++++++++|++|+|+++++..++.++. + +
T Consensus 32 ~~p~~~~~a~~~~~~~~~~Y~~~-----------~~~~lr~~ia~~~~~~~~~i~it~Ga~~~l~~~~~~~~-----~-~ 94 (354)
T PRK06358 32 GVPESLKQAITENLDKLVEYPDP-----------DYLELRKRIASFEQLDLENVILGNGATELIFNIVKVTK-----P-K 94 (354)
T ss_pred CCCHHHHHHHHHHHHhhhcCCCc-----------cHHHHHHHHHHHhCCChhhEEECCCHHHHHHHHHHHhC-----C-C
Confidence 45788889988877554444433 14689999999999999999999999999999988753 3 5
Q ss_pred EEEEcCCCCcchHHHHHHHHhCCcEEEEeccCC--CCCcChhHHHhhccCCceEEEEeccccccccccC---hHHHHHHh
Q psy15216 1484 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIGELC 1558 (2602)
Q Consensus 1484 ~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~---l~~I~~ia 1558 (2602)
.|++++|.|+.+....+.. |++++.++.+. ++.+| +++.+.+.++++++++++|+||||.+++ +++|+++|
T Consensus 95 ~v~i~~P~y~~~~~~~~~~---g~~~~~~~~~~~~~~~~d-~~~~~~~~~~~~~v~~~~P~NPtG~~~~~~~~~~l~~~a 170 (354)
T PRK06358 95 KVLILAPTFAEYERALKAF---DAEIEYAELTEETNFAAN-EIVLEEIKEEIDLVFLCNPNNPTGQLISKEEMKKILDKC 170 (354)
T ss_pred cEEEecCChHHHHHHHHHc---CCeeEEEeCccccCCCcc-HHHHHhhccCCCEEEEeCCCCCCCCccCHHHHHHHHHHH
Confidence 8999999999887666544 99999998864 34688 6777777788999999999999999998 77888889
Q ss_pred hhcCCEEEEecccccCc---cccc----CCCCCccEEEEccccccCCCc--eEEEEEe-cCCCCccccccccCCccccCC
Q psy15216 1559 RSKGVIFHCDAAQAVGK---IDIN----IQNYKVDLMSFSAHKIYGPKG--IGALYIR-RNPRTRIEAQIHGGGHEYGLR 1628 (2602)
Q Consensus 1559 ~~~gi~vivD~a~~~g~---~~~~----l~~~~~D~~v~S~~K~~gp~G--~G~l~~~-~~~~~~l~~~~~g~~~~~~~~ 1628 (2602)
++||+++|+|+++..-. .+.. +...+.-+++.|++|.+|++| +||++++ +.+++.+.... .
T Consensus 171 ~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~gl~G~RiG~lv~~~~~~~~~~~~~~---------~ 241 (354)
T PRK06358 171 EKRNIYLIIDEAFMDFLEENETISMINYLENFKNLIIIRAFTKFFAIPGLRLGYGLTSNKNLAEKLLQMR---------E 241 (354)
T ss_pred HhcCCEEEEeCcccccCCCccchhHHHhccCCCCEEEEEechhhccCcchhheeeecCCHHHHHHHHHhC---------C
Confidence 99999999999975211 0111 111223477789999998888 8999985 44444444321 1
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecCCcHHHHHhc--
Q psy15216 1629 SGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI-- 1706 (2602)
Q Consensus 1629 ~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~L-- 1706 (2602)
..+.+.....+...++.. ...+++.++.+++.++++.+.|.+ .+++.+..+ ...++++...+..++...|
T Consensus 242 ~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~r~~l~~~L~~-~~~~~~~~~------~g~f~~~~~~~~~~~~~~l~~ 313 (354)
T PRK06358 242 PWSINTFADLAGQTLLDD-KEYIKKTIQWIKEEKDFLYNGLSE-FKGIKVYKP------SVNFIFFKLEKPIDLRKELLK 313 (354)
T ss_pred CCcchHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHhc-CCCcEEcCC------cceEEEEEcCchHHHHHHHHH
Confidence 234555555555566642 233567777888889999999987 567665533 1223444433456666666
Q ss_pred CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1707 KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1707 ~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
+||.+++|..|... ..++|||+++ +.+++++++++|++
T Consensus 314 ~gI~v~~~~~f~~~-----------------~~~~iRls~~---~~~~~~~l~~~l~~ 351 (354)
T PRK06358 314 KGILIRSCSNYRGL-----------------DENYYRVAVK---SREDNKKLLKALEV 351 (354)
T ss_pred CCeEEEECCCCCCC-----------------CCCEEEEEeC---CHHHHHHHHHHHHH
Confidence 89999999877321 1278999998 88999999999986
|
|
| >TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-19 Score=236.81 Aligned_cols=315 Identities=16% Similarity=0.122 Sum_probs=220.3
Q ss_pred CCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCC------CCCcEEEeCCHHHHHHHHHHhhhh
Q psy15216 1403 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA------DPREIIWTSGATESNNLAIKGAAH 1476 (2602)
Q Consensus 1403 ~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~------~~~~iv~t~gaT~al~~al~~l~~ 1476 (2602)
.++++.+.+++.+.+.....+. |. ......++|+.++++++. ++++|++|+|+|+|+.+++.++.
T Consensus 47 ~~~~~~~~~~~~~~l~~~~~~~----Y~----~~~g~~~lr~~ia~~l~~~~~~~~~~~~ii~t~G~t~al~~~~~~l~- 117 (403)
T TIGR01265 47 LRTDPEAEEAVKDALRSGKFNG----YA----PSVGALAAREAVAEYLSSDLPGKLTADDVVLTSGCSQAIEICIEALA- 117 (403)
T ss_pred CCCCHHHHHHHHHHHhcCCCCC----CC----CCCCCHHHHHHHHHHHHhhcCCCCCHHHEEEecChHHHHHHHHHHhC-
Confidence 4667888999988876422111 10 112356788999999874 56789999999999999999987
Q ss_pred hhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCC--CCCcChhHHHhhccCCceEEEEeccccccccccC---h
Q psy15216 1477 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---I 1551 (2602)
Q Consensus 1477 ~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~---l 1551 (2602)
++||+|++++|+|+.+...... .|++++.++.++ ++.+|+++++++++++++++++++|+||||.++| +
T Consensus 118 ---~~gd~Vlv~~p~y~~~~~~~~~---~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~i~~p~NPtG~~~~~~~~ 191 (403)
T TIGR01265 118 ---NPGANILVPRPGFPLYDTRAAF---SGLEVRLYDLLPEKDWEIDLDGLEALADEKTVAIVVINPSNPCGSVFSRDHL 191 (403)
T ss_pred ---CCCCEEEEeCCCchhHHHHHHH---cCCEEEEecCCcccCCccCHHHHHHHhCcCccEEEEecCCCCCCCCCCHHHH
Confidence 7999999999999887655444 499999988753 4679999999999999999999999999999997 8
Q ss_pred HHHHHHhhhcCCEEEEecccccCc----ccccCCCC---CccEEEEccccccCCCc--eEEEEEec--CCCCc-ccc-cc
Q psy15216 1552 LEIGELCRSKGVIFHCDAAQAVGK----IDINIQNY---KVDLMSFSAHKIYGPKG--IGALYIRR--NPRTR-IEA-QI 1618 (2602)
Q Consensus 1552 ~~I~~ia~~~gi~vivD~a~~~g~----~~~~l~~~---~~D~~v~S~~K~~gp~G--~G~l~~~~--~~~~~-l~~-~~ 1618 (2602)
++|.++|+++|+++|+|++++.-. ....+..+ ..-+++.||+|.++.+| +||+++++ +.... +.. ..
T Consensus 192 ~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~v~~~~~~~~~~~~~~~~~ 271 (403)
T TIGR01265 192 QKIAEVARKLGIPIIADEIYGHMVFGDAPFIPMASFASIVPVLSLGGISKRWVVPGWRLGWIIIHDPHGIFRDTVLQGLK 271 (403)
T ss_pred HHHHHHHHHCCCEEEEEccccccccCCCCccchhhhccCCcEEEEeecccccCCCcceEEEEEEeCchhhhHHHHHHHHH
Confidence 889999999999999999976321 11122111 12367779999887778 89999853 22211 111 10
Q ss_pred ccCCccccCCCCCcchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEec-
Q psy15216 1619 HGGGHEYGLRSGTLATHQIVGMGEAFRL-ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF- 1696 (2602)
Q Consensus 1619 ~g~~~~~~~~~gt~~~~~~~al~~aL~~-~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~- 1696 (2602)
. . ... ...++...+.++..+|.. ....+++.++++.+.++++.+.|.. .+++.+..+. .+.++++..
T Consensus 272 ~-~---~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~p~-----~g~f~~~~~~ 340 (403)
T TIGR01265 272 N-L---LQR-ILGPATIVQGALPDILENTPQEFFDGKISVLKSNAELCYEELKD-IPGLVCPKPE-----GAMYLMVKLE 340 (403)
T ss_pred H-H---hhh-hcCCChHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhc-CCCceecCCC-----ceeEEEEecc
Confidence 0 0 000 123455555666666652 3345777788888889999999976 5666543221 122333321
Q ss_pred -------CCcHHHHHhc---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1697 -------IEGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1697 -------~~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
.+..++...+ +||.+.+|..|... +++||+++. ..+.++..+++|++
T Consensus 341 ~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~-------------------~~iRis~~~--~~~~l~~~l~~l~~ 397 (403)
T TIGR01265 341 LELFPEIKDDVDFCEKLVREESVICLPGSAFGLP-------------------NWVRITITV--PESMLEEACSRIKE 397 (403)
T ss_pred ccccCCCCCHHHHHHHHHHhCCEEEeCccccCCC-------------------CeEEEEecC--CHHHHHHHHHHHHH
Confidence 1345665553 69999999877432 799999984 57888888888875
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. |
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.9e-20 Score=249.93 Aligned_cols=302 Identities=13% Similarity=0.116 Sum_probs=227.5
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCcEEEeCCHH----HHHHHHHHhcccccccCCC----EEEEcCCCCcccHHHHHHHHhC
Q psy15216 38 TAEKAIEKARNEVAQLIYADPREIIWTSGAT----ESNNLAIKGAAHFYKKRGK----HIITVQTEHKSVLDSIRKLEND 109 (2602)
Q Consensus 38 ~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T----~al~~~~~~l~~~~~~~gd----~Vlv~~~~~~s~~~~~~~~~~~ 109 (2602)
.....+.++|+++++++|+ ++|+|++++| ++++++++++. -.+|| +|+++..+|+++..+|.+.
T Consensus 565 g~~~~~~~~r~~la~i~g~--~~v~f~pnaga~ge~a~~~vi~~~~---~~~Gd~~r~~vli~~~aH~sn~a~a~~~--- 636 (993)
T PLN02414 565 GYQEMFEDLGDLLCEITGF--DSFSLQPNAGAAGEYAGLMVIRAYH---LSRGDHHRNVCIIPVSAHGTNPASAAMC--- 636 (993)
T ss_pred HHHHHHHHHHHHHHHHhCC--CeEEEcCCCcHHHHHHHHHHHHHHH---hccCCCCCCEEEeCCCcCccCHHHHHHC---
Confidence 4567889999999999998 6999999999 99999999997 23387 9999999999999999875
Q ss_pred CcEEEEeccCCCCccChHHHHhhccC---CceEEEEecccCcccccccHHHHHHHHHhcCCEEEEeccccccc-ccccCC
Q psy15216 110 GFRVTYLKPKNNGLITLSQLEEKICS---DTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGK-IDINIQ 185 (2602)
Q Consensus 110 G~~v~~v~~~~~~~ld~e~l~~~i~~---~tklv~i~~~~npTG~~~~l~~I~~la~~~g~~livD~a~a~g~-~~~dl~ 185 (2602)
|++++.++++++|.+|+++|++++++ +|++|++++|+|.+|...|+++|+++||++|+++++|++|..+. ...+..
T Consensus 637 G~~vv~v~~d~~G~vDle~L~~~i~~~~~~ta~V~vt~pSn~gg~e~~I~eI~~iah~~Galv~vDgAq~~a~~~l~~p~ 716 (993)
T PLN02414 637 GMKIVVVGTDAKGNINIEELRKAAEAHKDNLAALMVTYPSTHGVYEEGIDEICDIIHDNGGQVYMDGANMNAQVGLTSPG 716 (993)
T ss_pred CCEEEEeccCCCCCcCHHHHHHHHhccCCCeEEEEEECCCccccccchHHHHHHHHHHcCCEEEEEecCHHhccCcCCcc
Confidence 99999999988999999999999984 78999999999999999999999999999999999999998887 445567
Q ss_pred CCCccEEEecccc-ccCC-----CCcEEEEEecCCCCcccceecCC--Ccccccc---ccCcch---hHHHHHHHHHHHH
Q psy15216 186 NYKVDLMSFSAHK-IYGP-----KGIGALYIRRNPRTRIEAQIHGG--GHEYGLR---SGTLAT---HQIVGMGEAFRLA 251 (2602)
Q Consensus 186 ~~~~D~~~~S~~K-~~Gp-----~G~G~l~~~~~~~~~l~~~~~g~--~~~~~~~---~gt~~~---~~~~al~~al~~~ 251 (2602)
++|+|++++|.|| +++| +|+|++++++.+...+.....+- +..+++. .|+.+. .+...+..|+.++
T Consensus 717 ~~GaD~~~~s~HK~f~~P~G~GGPg~G~l~~~~~L~p~lPg~~v~~~~~~~~r~~~s~iGt~~~a~~g~al~l~~A~~yi 796 (993)
T PLN02414 717 FIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVPTGGIPRPEKTQPLGTISAAPWGSALILPISYTYI 796 (993)
T ss_pred ccCCCEEEecCCccCCcCcccCCCCeeeEEEchhhcccCCCCccccCCCcccccCCCCcCCccchhhhhHHHHHHHHHHH
Confidence 8999999999999 5544 45999999987666654322111 1112222 355443 2224444555543
Q ss_pred H----HhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEc------ccChhHHHHHh--CCeEEcccc
Q psy15216 252 R----IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN------FIEGESLLMAI--KDIAVSSGS 319 (2602)
Q Consensus 252 ~----~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~------~~~~~~~~~~L--~gI~v~~g~ 319 (2602)
. +++.+..++...++.++.++|.+ ..++...++... ..+-+.+.+. +.+..++.++| +||.... .
T Consensus 797 ~~lG~~Gl~~~a~~a~~nAnYl~~rL~~-~~~~~~~~~~~~-~~hEfv~~~~~l~~~~g~~~~di~krL~d~Gihapt-~ 873 (993)
T PLN02414 797 AMMGSEGLTDASKIAILNANYMAKRLEG-HYPVLFRGKNGT-CAHEFIIDLRPFKNTAGIEPEDVAKRLMDYGFHAPT-M 873 (993)
T ss_pred HHHCHhHHHHHHHHHHHHHHHHHHHHHh-hCCccccCCCCC-eeeeEEEeccccccccCCCHHHHHHHHHHcCcEEee-e
Confidence 2 45666688899999999999977 334433332221 1122333333 13446777777 6776543 1
Q ss_pred cCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 320 ACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 320 ~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
.+ + ..+.+||+++-+++.+|+|+|+++|+..
T Consensus 874 ~~-p------------------v~~~lmiepTE~~skeelDrf~~al~~i 904 (993)
T PLN02414 874 SW-P------------------VPGTLMIEPTESESKAELDRFCDALISI 904 (993)
T ss_pred cc-c------------------cCCEEEEEeeeeCCHHHHHHHHHHHHHH
Confidence 11 1 1378999999999999999999999764
|
|
| >PRK08153 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.2e-20 Score=237.41 Aligned_cols=306 Identities=15% Similarity=0.117 Sum_probs=219.8
Q ss_pred CCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccC
Q psy15216 1402 TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKR 1481 (2602)
Q Consensus 1402 ~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~ 1481 (2602)
..+.++.+.+++.+.......+|.. ...++|+++++++++++++|++|+|+++++..++.++. ++
T Consensus 43 ~~~~~~~~~~a~~~~~~~~~~Y~~~-----------~~~~Lr~~ia~~~~~~~~~I~it~G~~~~l~~~~~~~~----~~ 107 (369)
T PRK08153 43 GFGPSPSVIAAMREAAAEIWKYGDP-----------ENHDLRHALAAHHGVAPENIMVGEGIDGLLGLIVRLYV----EP 107 (369)
T ss_pred CCCCCHHHHHHHHHHHHHhhcCCCC-----------ccHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHhc----CC
Confidence 4577888999998877554444433 14579999999999999999999999999999999887 89
Q ss_pred CCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhc-cCCceEEEEeccccccccccChHHHHHHhhh
Q psy15216 1482 GKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKI-CSDTILVSVMLVNNEIGVIQPILEIGELCRS 1560 (2602)
Q Consensus 1482 gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i-~~~t~lv~l~~~~n~tG~~~~l~~I~~ia~~ 1560 (2602)
||.|++++|+|+.+...+... |++++.++.+.+ .+|++++.+.+ +++++++++++|+||||.++|.+++.++++.
T Consensus 108 gd~vlv~~p~y~~~~~~~~~~---g~~~~~vp~~~~-~~~~~~l~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~l~~~ 183 (369)
T PRK08153 108 GDPVVTSLGAYPTFNYHVAGF---GGRLVTVPYRDD-REDLDALLDAARRENAPLVYLANPDNPMGSWHPAADIVAFIEA 183 (369)
T ss_pred CCEEEECCCcchHHHHHHHHc---CCeEEEeeCCCC-CCCHHHHHHHhcccCCcEEEEeCCCCCCCCCCCHHHHHHHHHh
Confidence 999999999999987666654 899999988655 48899998776 4789999999999999999998777776654
Q ss_pred --cCCEEEEecccccCcc---cccCCC-CCccEEEEccccccCCCc--eEEEEEecCCCCccccccccCCccccCCCCCc
Q psy15216 1561 --KGVIFHCDAAQAVGKI---DINIQN-YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTL 1632 (2602)
Q Consensus 1561 --~gi~vivD~a~~~g~~---~~~l~~-~~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~ 1632 (2602)
+++++|+|+++..-.. ...+.. .+..+++.||+|.+|++| +||+++++++++.+..... ..+.
T Consensus 184 ~~~~~~lI~DE~y~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~v~~~~~~~~l~~~~~---------~~~~ 254 (369)
T PRK08153 184 LPETTLLVLDEAYCETAPAGAAPPIDTDDPNVIRMRTFSKAYGLAGARVGYAIGAPGTIKAFDKVRN---------HFGM 254 (369)
T ss_pred CCCCcEEEEeCchhhhcCcccchhhhhcCCCEEEEecchHhccCcchheeeeecCHHHHHHHHHhhc---------CCCC
Confidence 3899999999753210 111211 123477889999988888 7999998876665543221 1245
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEec--CCcHHHHHhc--CC
Q psy15216 1633 ATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF--IEGESLLMAI--KD 1708 (2602)
Q Consensus 1633 ~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~L--~g 1708 (2602)
+...+.++.++|+. ...+++.++...+.++++.+.|.+ .++... +.. ..+..+.++. .....+...| +|
T Consensus 255 s~~~q~~~~~~l~~-~~~~~~~~~~~~~~r~~~~~~L~~--~g~~~~-p~~---~~f~~~~~~~~~~~a~~l~~~l~~~G 327 (369)
T PRK08153 255 NRIAQAAALAALKD-QAYLAEVVGKIAAARDRIAAIARA--NGLTPL-PSA---TNFVAIDCGRDGAFARAVLDGLIARD 327 (369)
T ss_pred CHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHH--CCCccC-CCc---CcEEEEECCCCcccHHHHHHHHHHCC
Confidence 56666666677652 234566777788888888888876 355432 211 1122222221 1245666655 79
Q ss_pred EEEc-cccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1709 IAVS-SGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1709 I~v~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
|.++ ++... ..+++|++++ +.+++++++++|++.
T Consensus 328 i~v~~p~~~~--------------------~~~~iRis~~---~~~~~~~~~~al~~~ 362 (369)
T PRK08153 328 IFVRMPGVAP--------------------LDRCIRVSCG---PDEELDLFAEALPEA 362 (369)
T ss_pred eEEeeCCCCC--------------------CCCeEEEecC---CHHHHHHHHHHHHHH
Confidence 9985 33211 1268999998 789999999999974
|
|
| >PRK09148 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.4e-20 Score=240.94 Aligned_cols=313 Identities=14% Similarity=0.070 Sum_probs=213.6
Q ss_pred CCCHHHHHHHHHHHhh--hcCCCCCCCcchhhhHHHHHHHHHHHHHHHh----C--CCCC-cEEEeCCHHHHHHHHHHhc
Q psy15216 8 PIDPRVVDKMIPYLRV--QFGNPASRNHIYGWTAEKAIEKARNEVAQLI----Y--ADPR-EIIWTSGATESNNLAIKGA 78 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~--~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~----g--~~~~-~Iv~t~g~T~al~~~~~~l 78 (2602)
++|+.+.+++.+.+.. ...|++. ....++|+++|+++ | ++++ +|++|+|+++|+.+++.++
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~Y~~~----------~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~l 112 (405)
T PRK09148 43 PTPQHIVDKLCETAQDPRTHRYSAS----------KGIPGLRRAQAAYYARRFGVKLNPDTQVVATLGSKEGFANMAQAI 112 (405)
T ss_pred CCCHHHHHHHHHHHcCcccCCCCCC----------CCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHHHHh
Confidence 4567788887776532 1122221 12345666666665 5 4576 8999999999999999998
Q ss_pred ccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCC--ccChHHHHhhccCCceEEEEecccCcccccccH-
Q psy15216 79 AHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNG--LITLSQLEEKICSDTILVSVMLVNNEIGVIQPI- 155 (2602)
Q Consensus 79 ~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~--~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l- 155 (2602)
. ++||.|++++|+|+.+...+... |++++.++.+.++ ..++++..+...++++++++++||||||.+++.
T Consensus 113 ~----~~gd~Vl~~~P~y~~~~~~~~~~---g~~v~~v~~~~~~~~~~~l~~~~~~~~~~~~~v~l~~P~NPtG~~~s~~ 185 (405)
T PRK09148 113 T----APGDVILCPNPSYPIHAFGFIMA---GGVIRSVPAEPDEEFFPALERAVRHSIPKPIALIVNYPSNPTAYVADLD 185 (405)
T ss_pred c----CCCCEEEEcCCCCcccHHHHHhc---CCEEEEEeCCCCCCCccCHHHHHhhccccceEEEEeCCCCCCCcCCCHH
Confidence 7 89999999999999987777655 9999999886543 234444444445789999999999999999996
Q ss_pred --HHHHHHHHhcCCEEEEeccccccc---cc-ccCCC----CCccEEEeccccccCCCC--cEEEEEecCCCCcccceec
Q psy15216 156 --LEIGELCRSKGVIFHCDAAQAVGK---ID-INIQN----YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIH 223 (2602)
Q Consensus 156 --~~I~~la~~~g~~livD~a~a~g~---~~-~dl~~----~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~ 223 (2602)
++|.++|++||+++|+|++|..-. .+ ..+.. .+..+++.|+||.+|++| +||+++++++++.+....
T Consensus 186 ~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~s~~~~~~~~~~~i~~~SfSK~~~~pGlR~G~~v~~~~~i~~l~~~~- 264 (405)
T PRK09148 186 FYKDVVAFAKKHDIIILSDLAYSEIYFDGNPPPSVLQVPGAKDVTVEFTSMSKTFSMAGWRMGFAVGNERLIAALTRVK- 264 (405)
T ss_pred HHHHHHHHHHHcCeEEEEeccchhhhcCCCCCCChhhCCCccCcEEEEeccccccCCcchheeeeeCCHHHHHHHHHHH-
Confidence 568888999999999999986321 11 11111 123466889999999888 899999888777665432
Q ss_pred CCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc---
Q psy15216 224 GGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF--- 300 (2602)
Q Consensus 224 g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~--- 300 (2602)
.....+++.+...++..+|+....++++.+.++++.++++.+.|.. .++.+..+.. ....++.++.
T Consensus 265 ------~~~~~~~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~r~~l~~~L~~--~~~~~~~p~~---g~f~~~~l~~~~~ 333 (405)
T PRK09148 265 ------SYLDYGAFTPIQVAATAALNGPQDCIAEMRELYKKRRDVLVESFGR--AGWDIPPPAA---SMFAWAPIPEAFR 333 (405)
T ss_pred ------HHhccCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH--cCCccCCCCe---eEEEEEECCCccC
Confidence 1112233444444455566522345677788889999999999977 3554332211 1223333332
Q ss_pred -cChhHHHHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 301 -IEGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 301 -~~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
.+..++...+ +||.+.+|..|... ..+++||+++ .+.+++...++.|.+
T Consensus 334 ~~~~~~~~~~ll~~~gV~v~pg~~f~~~-----------------~~~~~Ri~~~--~~~~~l~~al~~l~~ 386 (405)
T PRK09148 334 HLGSLEFSKLLVEKADVAVAPGVGFGEH-----------------GDGYVRIALV--ENEQRIRQAARNIKR 386 (405)
T ss_pred CCCHHHHHHHHHHhCCEEEeCchhhCCC-----------------CCCeEEEEec--CCHHHHHHHHHHHHH
Confidence 1234565543 69999999766321 1378999997 467888888888875
|
|
| >PRK12414 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.6e-20 Score=238.69 Aligned_cols=317 Identities=15% Similarity=0.094 Sum_probs=221.5
Q ss_pred CCCCHHHHHHHHHHHhhc-cCCCCCccchhHHHHHHHHHHHHHHHHHHhCCC--C-CcEEEeCCHHHHHHHHHHhhhhhh
Q psy15216 1403 TPIDPRVVDKMIPYLRVQ-FGNPASRNHIYGWTAEKAIEKARNEVAQLIYAD--P-REIIWTSGATESNNLAIKGAAHFY 1478 (2602)
Q Consensus 1403 ~~~~~~v~eal~~~l~~~-~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~--~-~~iv~t~gaT~al~~al~~l~~~~ 1478 (2602)
.++++.+.+++.+.+... ..|+. ..+..++.+.+.+.+++++|++ + ++|++|+|+++|+..++.++.
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~Y~~------~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~it~g~~~al~~~~~~l~--- 111 (384)
T PRK12414 41 FAPDPALVEGVARAMRDGHNQYAP------MAGIAALREALAEKTERLYGARYDPASEVTVIASASEGLYAAISALV--- 111 (384)
T ss_pred CCCCHHHHHHHHHHHHhCCCCcCC------CCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEECChHHHHHHHHHHhc---
Confidence 355778888888776532 12211 1123345566666777777873 3 579999999999999999887
Q ss_pred ccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCC-CCCcChhHHHhhccCCceEEEEeccccccccccC---hHHH
Q psy15216 1479 KKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEI 1554 (2602)
Q Consensus 1479 ~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~-~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~---l~~I 1554 (2602)
++||+|++++|+|+.+...++.+ |++++.++.++ ++.+|++.|++++++++++|++++|+||||.+++ +++|
T Consensus 112 -~~gd~Vlv~~p~y~~~~~~~~~~---g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~NPTG~~~s~~~~~~i 187 (384)
T PRK12414 112 -HPGDEVIYFEPSFDSYAPIVRLQ---GATPVAIKLSPEDFRVNWDEVAAAITPRTRMIIVNTPHNPSATVFSAADLARL 187 (384)
T ss_pred -CCCCEEEEeCCCccchHHHHHHc---CCEEEEEecCccccccCHHHHHhhcCcccEEEEEcCCCCCCCcCCCHHHHHHH
Confidence 89999999999999887766655 89999999875 5679999999999999999999999999999986 7788
Q ss_pred HHHhhhcCCEEEEecccccCc----ccccCCCC----CccEEEEccccccCCCc--eEEEEEecCCCCccccccccCCcc
Q psy15216 1555 GELCRSKGVIFHCDAAQAVGK----IDINIQNY----KVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHE 1624 (2602)
Q Consensus 1555 ~~ia~~~gi~vivD~a~~~g~----~~~~l~~~----~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~~g~~~~ 1624 (2602)
+++|++||+++|+|++|..-. ....+... +..+++.||+|.+|++| +||+++++++++.+.....
T Consensus 188 ~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pGlRiG~~v~~~~l~~~l~~~~~----- 262 (384)
T PRK12414 188 AQLTRNTDIVILSDEVYEHVVFDGARHHSMARHRELAERSVIVSSFGKSYHVTGWRVGYCLAPAELMDEIRKVHQ----- 262 (384)
T ss_pred HHHHHHCCeEEEEhhhhhhccCCCCCccCcccCcCccCcEEEEecccccccCccceEEEEecCHHHHHHHHHHHh-----
Confidence 889999999999999986311 11112111 13488889999888888 8999999877766654321
Q ss_pred ccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEE--Eec---CCc
Q psy15216 1625 YGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNIS--FNF---IEG 1699 (2602)
Q Consensus 1625 ~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~--~~~---~~~ 1699 (2602)
....+.+.+.+.++..+|.... .....+..+++.++.+.+.|.+ .++.+..+.. ..+++ ++. ...
T Consensus 263 --~~~~~~s~~~q~a~~~~l~~~~-~~~~~~~~~~~~r~~l~~~L~~--~g~~~~~~~g-----g~~~~~~~~~~~~~~~ 332 (384)
T PRK12414 263 --FMVFSADTPMQHAFAEALAEPA-SYLGLGAFYQRKRDLLARELAG--SRFELLPSEG-----SFFMLARFRHFSDESD 332 (384)
T ss_pred --heecCCCcHHHHHHHHHhcCCh-HHHHHHHHHHHHHHHHHHHHHh--CCCeecCCCc-----ceEEEEcccccCCCCH
Confidence 1122344455555556664211 2334667778888999999987 3555543211 12222 222 123
Q ss_pred HHHH-Hhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1700 ESLL-MAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1700 ~~~~-~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
.+++ ..+ +||.+.+|..|... + ...+++||+++. +.++++..+++|.+
T Consensus 333 ~~~~~~~l~~~gV~v~pg~~f~~~-----------~----~~~~~iRis~~~--~~~~~~~~~~rl~~ 383 (384)
T PRK12414 333 SDFVLRLIRDARVATIPLSAFYTD-----------G----TDTGLIRLSFSK--DDATLVEGARRLCS 383 (384)
T ss_pred HHHHHHHHHhCCEEEecchhhcCC-----------C----CCCCEEEEEecC--CHHHHHHHHHHHhh
Confidence 4444 333 79999999877432 0 113789999994 68999999988874
|
|
| >PRK06107 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.6e-20 Score=238.52 Aligned_cols=314 Identities=12% Similarity=0.049 Sum_probs=220.7
Q ss_pred CCCHHHHHHHHHHHhhc-cCCCCCccchhHHHHHHHHHHHHHHHHHHhCC--CCCcEEEeCCHHHHHHHHHHhhhhhhcc
Q psy15216 1404 PIDPRVVDKMIPYLRVQ-FGNPASRNHIYGWTAEKAIEKARNEVAQLIYA--DPREIIWTSGATESNNLAIKGAAHFYKK 1480 (2602)
Q Consensus 1404 ~~~~~v~eal~~~l~~~-~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~--~~~~iv~t~gaT~al~~al~~l~~~~~~ 1480 (2602)
+.++.+.+++.+.++.. ..++.. .+..++.+.+.+.+++.+|. ++++|++|+|+++|++.++.++. +
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~Y~~~------~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~~~----~ 115 (402)
T PRK06107 46 DTPDHIKQAAVAAIERGETKYTLV------NGTPALRKAIIAKLERRNGLHYADNEITVGGGAKQAIFLALMATL----E 115 (402)
T ss_pred CCCHHHHHHHHHHHHcCCCCCCCC------CCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHhc----C
Confidence 44677888888877642 122221 11223445555555555565 67889999999999999998876 8
Q ss_pred CCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCC--CCCcChhHHHhhccCCceEEEEeccccccccccC---hHHHH
Q psy15216 1481 RGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIG 1555 (2602)
Q Consensus 1481 ~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~---l~~I~ 1555 (2602)
+||+|++++|.|+.+...+... +..++.++.+. ++.+|++++++++.++++++++++|+||||..+| +++|+
T Consensus 116 ~gd~vl~~~p~y~~y~~~~~~~---~~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~s~~~~~~l~ 192 (402)
T PRK06107 116 AGDEVIIPAPYWVSYPDMVLAN---DGTPVIVACPEEQGFKLTPEALEAAITPRTRWLILNAPSNPTGAVYSRAELRALA 192 (402)
T ss_pred CCCEEEEecCCCcCHHHHHHHc---CCEEEEecCCcccCCCCCHHHHHhhcCcCceEEEEECCCCCCCcCcCHHHHHHHH
Confidence 9999999999999887665544 77777887753 4568999999999999999999999999999998 56678
Q ss_pred HHhhhc-CCEEEEeccccc----CcccccCC----CC-CccEEEEccccccCCCc--eEEEEEecCCCCccccccccCCc
Q psy15216 1556 ELCRSK-GVIFHCDAAQAV----GKIDINIQ----NY-KVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGH 1623 (2602)
Q Consensus 1556 ~ia~~~-gi~vivD~a~~~----g~~~~~l~----~~-~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~~g~~~ 1623 (2602)
++|++| ++++|+|++++. +.....+. ++ ..-+++.|+||.+|++| +||++.++++++.+.....
T Consensus 193 ~~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~~~~~~~~~~~~~~~~---- 268 (402)
T PRK06107 193 DVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPELRDRVLVTNGVSKTYAMTGWRIGYAAGPADLIAAINKLQS---- 268 (402)
T ss_pred HHHHHcCCeEEEEehhccccccCCCCCCCHHHhCcCccCCEEEEeccchhhcCcccceeeeecCHHHHHHHHHHHH----
Confidence 888998 999999998852 11111111 11 23477779999888888 7999999877766654321
Q ss_pred cccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEec-------
Q psy15216 1624 EYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF------- 1696 (2602)
Q Consensus 1624 ~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~------- 1696 (2602)
....+++...+.++..+|......++...+++.+.++.+++.|.+ .+++.+..+.. ..++++..
T Consensus 269 ---~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~-~~g~~~~~p~g-----g~~~~~~~~~~~~~~ 339 (402)
T PRK06107 269 ---QSSSCPSSISQAAAAAALNGDQSFVTESVAVYKQRRDYALALLNA-IPGLSCLVPDG-----AFYLYVNCAGLIGKT 339 (402)
T ss_pred ---hcccCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHhc-CCCCcccCCCc-----ceEEeeecccccccc
Confidence 112345666666666676522345677778888889999999976 56766543322 12222211
Q ss_pred -------CCcHHHHHhc---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1697 -------IEGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1697 -------~~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
.+..++...+ +||.+.+|..|+.. +++|++++. +.++++++++.|++
T Consensus 340 ~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~Fg~~-------------------~~iRis~~~--~~e~l~~~l~~l~~ 396 (402)
T PRK06107 340 TPEGKVLETDQDVVLYLLDSAGVAVVQGTAYGLS-------------------PYFRLSIAT--SLETLEEACARIER 396 (402)
T ss_pred cccccCCCCHHHHHHHHHHhCCEEEeCccccCCC-------------------CeEEEEeCC--CHHHHHHHHHHHHH
Confidence 1234555444 69999999877432 799999994 68999999999986
|
|
| >PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.1e-20 Score=238.20 Aligned_cols=333 Identities=18% Similarity=0.149 Sum_probs=233.6
Q ss_pred CCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCE
Q psy15216 9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKH 88 (2602)
Q Consensus 9 ~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~ 88 (2602)
.++...+++.+.+.+.+.++ .+...++++.+|+++|++ ++++++|+|+|+++++.++. +++||+
T Consensus 12 ~~~~e~~~~~~~l~~~~~~~-----------g~~~~~le~~la~~~g~~--~~v~~~sgt~al~lal~al~---~~~Gd~ 75 (379)
T PRK11658 12 MGDEELAAVKEVLRSGWITT-----------GPKNQALEQAFCQLTGNQ--HAIAVSSATAGMHITLMALG---IGPGDE 75 (379)
T ss_pred CCHHHHHHHHHHHHcCCccC-----------CHhHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHHHcC---CCCCCE
Confidence 45667888888776532221 124788999999999985 68889999999999999984 389999
Q ss_pred EEEcCCCCcccHHHHHHHHhCCcEEEEeccCCC-CccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHhcCC
Q psy15216 89 IITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN-GLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGV 167 (2602)
Q Consensus 89 Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~-~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~~g~ 167 (2602)
|++++++|+++..++... |+++++++++++ +.+|+++++++++++|++|+.+| ++|...|+++|.++|++||+
T Consensus 76 Viv~~~~~~~~~~~~~~~---G~~~v~vd~~~~~~~~d~~~l~~~i~~~tkav~~~~---~~G~~~d~~~i~~~a~~~gi 149 (379)
T PRK11658 76 VITPSLTWVSTLNMIVLL---GATPVMVDVDRDTLMVTPEAIEAAITPRTKAIIPVH---YAGAPADLDAIRAIGERYGI 149 (379)
T ss_pred EEECCCcHHHHHHHHHHc---CCEEEEEecCCCcCCcCHHHHHHhcccCCeEEEEeC---CCCCcCCHHHHHHHHHHcCC
Confidence 999999999987766654 999999998764 56899999999999999988544 59999999999999999999
Q ss_pred EEEEecccccccccc--cCCCCCccEEEecccc-ccCCCCcEEEEEe-cCCCCcccceecCCCccc--------------
Q psy15216 168 IFHCDAAQAVGKIDI--NIQNYKVDLMSFSAHK-IYGPKGIGALYIR-RNPRTRIEAQIHGGGHEY-------------- 229 (2602)
Q Consensus 168 ~livD~a~a~g~~~~--dl~~~~~D~~~~S~~K-~~Gp~G~G~l~~~-~~~~~~l~~~~~g~~~~~-------------- 229 (2602)
++|+|++|++|.... .+...+.++++++.+| +.++.| |+++.+ +++.+++++....|....
T Consensus 150 ~vi~D~a~a~g~~~~~~~~g~~g~~~~Sf~~~K~l~~g~G-G~v~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~ 228 (379)
T PRK11658 150 PVIEDAAHAVGTYYKGRHIGARGTAIFSFHAIKNITCAEG-GLVVTDDDELADRLRSLKFHGLGVDAFDRQTQGRAPQAE 228 (379)
T ss_pred eEEEECCCccCCeECCeecCCCCCEEEeCCCCCcCcccCc-eEEEECCHHHHHHHHHHHHcCCCcchhhhhcccCCCcce
Confidence 999999999886543 2444566677777778 444444 666654 556666655433221110
Q ss_pred cccccCcchhHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCC--CCCCceEEEEEc----ccC
Q psy15216 230 GLRSGTLATHQIVGMGEAFRLAR-IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMN--NRIPHNLNISFN----FIE 302 (2602)
Q Consensus 230 ~~~~gt~~~~~~~al~~al~~~~-~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~--~~~~~~~~~~~~----~~~ 302 (2602)
.+..|+. ..+..+.+|+.+.+ .++++..++.+++++++.+.|++ ++...+..+.. ...++.+.+.++ +.+
T Consensus 229 ~~~~G~n--~~~~~l~AAl~~~ql~~l~~~~~~r~~~a~~~~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (379)
T PRK11658 229 VLTPGYK--YNLADINAAIALVQLAKLEALNARRREIAARYLQALAD-LPFQPLSLPAWPHQHAWHLFIIRVDEERCGIS 305 (379)
T ss_pred eeccccc--cCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCccCcCCCCCCceeEEEEEEEECCccccCC
Confidence 0111221 11334556666333 56899999999999999999977 55433322221 112234444553 235
Q ss_pred hhHHHHHh--CCeEEcccccCCCCCCChHHHHH----HcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 303 GESLLMAI--KDIAVSSGSACTSASLEPSYVLR----ALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 303 ~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~----~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
.+++.+.| +||.++ .+|.+.+.++.+... .+...+......|.++++...+++|+++++++|++.
T Consensus 306 r~~~~~~L~~~gI~~~--~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lP~~~~l~~~~~~~i~~~i~~~ 376 (379)
T PRK11658 306 RDALMEALKERGIGTG--LHFRAAHTQKYYRERFPTLSLPNTEWNSERICSLPLFPDMTDADVDRVITALQQI 376 (379)
T ss_pred HHHHHHHHHHCCCCCc--ccCcCcccChhhhccCCCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHH
Confidence 67888888 677644 455566666544221 122333444578999999999999999999999964
|
|
| >TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.6e-20 Score=241.41 Aligned_cols=311 Identities=15% Similarity=0.103 Sum_probs=220.1
Q ss_pred CCCCHHHHHHHHHHHhhc--cCC-CCCccchhHHHHHHHHHHHHHHHHHHhC-----CCCCcEEEeCCHHHHHHHHHHhh
Q psy15216 1403 TPIDPRVVDKMIPYLRVQ--FGN-PASRNHIYGWTAEKAIEKARNEVAQLIY-----ADPREIIWTSGATESNNLAIKGA 1474 (2602)
Q Consensus 1403 ~~~~~~v~eal~~~l~~~--~~n-p~~~~~~~~~~~~~~~~~lr~~ia~~~g-----~~~~~iv~t~gaT~al~~al~~l 1474 (2602)
.++++.+.+++.+.+... .++ |.. ...++|++++++++ +++++|++|+|+++|+.+++.++
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~Y~~~~-----------g~~~lr~aia~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l 115 (401)
T TIGR01264 47 LPTDPEVMQAMKDSLDSGKYNGYAPTV-----------GALSAREAIASYYHNPDGPIEADDVVLCSGCSHAIEMCIAAL 115 (401)
T ss_pred CCCCHHHHHHHHHHHhccCCCCCCCCC-----------CCHHHHHHHHHHHhhcCCCCCHHHEEECcChHHHHHHHHHHh
Confidence 456778888888877642 112 221 24678899999986 67789999999999999999988
Q ss_pred hhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCC--CCCcChhHHHhhccCCceEEEEeccccccccccC--
Q psy15216 1475 AHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP-- 1550 (2602)
Q Consensus 1475 ~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~-- 1550 (2602)
. ++||+|++++|+|+.+...+... |++++.++.+. ++.+|++.++++++++++++++++|+||||.+++
T Consensus 116 ~----~~gd~v~i~~P~y~~~~~~~~~~---g~~v~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~NPtG~~~~~~ 188 (401)
T TIGR01264 116 A----NAGQNILVPRPGFPLYETLAESM---GIEVKLYNLLPDKSWEIDLKQLESLIDEKTAALIVNNPSNPCGSVFSRQ 188 (401)
T ss_pred C----CCCCEEEEeCCCChhHHHHHHHc---CCEEEEeecCCccCCCCCHHHHHHHhccCceEEEEcCCCCCCCCCCCHH
Confidence 7 79999999999998876665544 99999988753 4679999999999989999999999999999998
Q ss_pred -hHHHHHHhhhcCCEEEEecccccCc----ccccCCCCC---ccEEEEccccccCCCc--eEEEEEecC------CCCcc
Q psy15216 1551 -ILEIGELCRSKGVIFHCDAAQAVGK----IDINIQNYK---VDLMSFSAHKIYGPKG--IGALYIRRN------PRTRI 1614 (2602)
Q Consensus 1551 -l~~I~~ia~~~gi~vivD~a~~~g~----~~~~l~~~~---~D~~v~S~~K~~gp~G--~G~l~~~~~------~~~~l 1614 (2602)
+++|+++|++||+++|+|+++..-. ...++.... .-+++.||+|.|+++| +||+++++. .++.+
T Consensus 189 ~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~iv~~~~~~~~~~~~~~~ 268 (401)
T TIGR01264 189 HLEEILAVAERQCLPIIADEIYGDMVFSGATFEPLASLSSTVPILSCGGLAKRWLVPGWRLGWIIIHDRRGILRDIRDGL 268 (401)
T ss_pred HHHHHHHHHHHCCCEEEEEhhhhhhccCCcccccHHHcCCCCcEEEEccCcccCCCccceEEEEEecCcchhHHHHHHHH
Confidence 7788899999999999999975311 111111111 2367889999888888 899998742 11112
Q ss_pred ccccccCCccccCCCCCcchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEE
Q psy15216 1615 EAQIHGGGHEYGLRSGTLATHQIVGMGEAFRL-ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNIS 1693 (2602)
Q Consensus 1615 ~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~-~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~ 1693 (2602)
.... ....+++...+.++..+|.. ....+++.++++++.++++.+.|.+ .+++.+..+.. .....+.
T Consensus 269 ~~~~--------~~~~~~~~~~q~a~~~~l~~~~~~~l~~~~~~~~~~r~~l~~~L~~-~~~~~~~~p~~---g~f~~~~ 336 (401)
T TIGR01264 269 VKLS--------QRILGPCTIVQGALPSILLRTPQEYFDGTLSVLESNAMLCYGALAA-VPGLRPVMPSG---AMYMMVG 336 (401)
T ss_pred HHHh--------hccCCCCcHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHh-CCCCcccCCCe---eeEEEEE
Confidence 1110 00123445555556566642 2355778888888899999999987 55654332211 1111222
Q ss_pred Eec------CCcHHHHHhc---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1694 FNF------IEGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1694 ~~~------~~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
++. .+..++...+ +||.+.+|..|..+ +++|++++. ..++++..+++|.+
T Consensus 337 ~~~~~~~~~~~~~~~~~~l~~~~gI~v~pg~~f~~~-------------------~~iRis~~~--~~~~l~~~l~rl~~ 395 (401)
T TIGR01264 337 IEMEHFPEFKNDVEFTERLVAEQSVFCLPGSCFEYP-------------------GFFRVVLTV--PVVMMEEACSRIQE 395 (401)
T ss_pred ecccccCCCCCHHHHHHHHHHhCCEEEeCchhcCCC-------------------CeEEEEEcC--CHHHHHHHHHHHHH
Confidence 211 1234555443 69999998876432 799999984 57899999999886
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs. |
| >PRK09265 aminotransferase AlaT; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-19 Score=236.26 Aligned_cols=317 Identities=14% Similarity=0.129 Sum_probs=214.3
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHh------CCCCCcEEEeCCHHHHHHHHHHhhhhh
Q psy15216 1404 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI------YADPREIIWTSGATESNNLAIKGAAHF 1477 (2602)
Q Consensus 1404 ~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~------g~~~~~iv~t~gaT~al~~al~~l~~~ 1477 (2602)
+.++.+.+++.+.+.....++.. ....++|+++++++ ++++++|++|+|+++++.+++.++.
T Consensus 49 ~~~~~i~~~~~~~~~~~~~Y~~~----------~G~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~~l~~~~~~~~-- 116 (404)
T PRK09265 49 EAPDEILRDVIRNLPTAQGYSDS----------KGLFSARKAIMQYYQQKGIPDVDVDDIYIGNGVSELIVMAMQALL-- 116 (404)
T ss_pred CCCHHHHHHHHHHhhcCCCCCCC----------CCcHHHHHHHHHHHhccCCCCCCcccEEEeCChHHHHHHHHHHhC--
Confidence 46778888887766543333332 12457889999988 6788999999999999999999886
Q ss_pred hccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCC--CCCcChhHHHhhccCCceEEEEeccccccccccC---hH
Q psy15216 1478 YKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---IL 1552 (2602)
Q Consensus 1478 ~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~---l~ 1552 (2602)
++||+|++++|+|+.+...+... |.+++.++.+. ++.+|++++++++++++++|++++|+||||.++| ++
T Consensus 117 --~~gd~Vlv~~p~y~~~~~~~~~~---g~~~v~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~P~NPtG~~~~~~~~~ 191 (404)
T PRK09265 117 --NNGDEVLVPAPDYPLWTAAVSLS---GGKPVHYLCDEEAGWFPDLDDIRSKITPRTKAIVIINPNNPTGAVYSKELLE 191 (404)
T ss_pred --CCCCEEEEeCCCCcChHHHHHHc---CCEEEEEecccccCCCCCHHHHHHhccccceEEEEECCCCCCCcCCCHHHHH
Confidence 89999999999999987776554 88888887653 4668999999999999999999999999999999 88
Q ss_pred HHHHHhhhcCCEEEEecccccC----cccccCCCC--C-ccEEEEccccccCCCc--eEEEEEec--CCCCccccccccC
Q psy15216 1553 EIGELCRSKGVIFHCDAAQAVG----KIDINIQNY--K-VDLMSFSAHKIYGPKG--IGALYIRR--NPRTRIEAQIHGG 1621 (2602)
Q Consensus 1553 ~I~~ia~~~gi~vivD~a~~~g----~~~~~l~~~--~-~D~~v~S~~K~~gp~G--~G~l~~~~--~~~~~l~~~~~g~ 1621 (2602)
+|.++|++||+++|+|++++.- .....+... . .-+++.|++|.+|++| +||++++. +..+.+.....
T Consensus 192 ~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~v~~~~~~~~~~~~~~~~-- 269 (404)
T PRK09265 192 EIVEIARQHNLIIFADEIYDKILYDGAVHISIASLAPDLLCVTFNGLSKAYRVAGFRVGWMVLSGPKKHAKGYIEGLD-- 269 (404)
T ss_pred HHHHHHHHCCCEEEEehhhhhccCCCCCcCCHHHcCCCceEEEEecchhhccCcccceEEEEEeCchHHHHHHHHHHH--
Confidence 8999999999999999997521 111111111 1 2356679999988888 89999742 21111111000
Q ss_pred CccccCCCCCcchhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecC--
Q psy15216 1622 GHEYGLRSGTLATHQIVGMGEAFRLARI--EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI-- 1697 (2602)
Q Consensus 1622 ~~~~~~~~gt~~~~~~~al~~aL~~~~~--~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~-- 1697 (2602)
. ......+++.+.+.++..+|..... .+.....++.+.++++.+.|.+ .+++.+..+... ....+.++..
T Consensus 270 -~-~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~L~~-~~~~~~~~p~~g---~~l~~~~~~~~~ 343 (404)
T PRK09265 270 -M-LASMRLCANVPAQHAIQTALGGYQSINELILPGGRLYEQRDRAWELLNA-IPGVSCVKPKGA---LYAFPKLDPKVY 343 (404)
T ss_pred -H-HhccccCCCcHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHhc-CCCCcccCCCcc---eEEEEEeccccc
Confidence 0 0011123455556666666642111 1112223566678888888876 567655432211 1122223321
Q ss_pred ---CcHH-HHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1698 ---EGES-LLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1698 ---~~~~-~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
+..+ +...+ +||.+.+|..|... ..+++|++++ .+.++++.++++|++
T Consensus 344 ~~~~~~~~~~~~l~~~gv~v~pg~~F~~~-----------------~~~~~Ri~~~--~~~e~l~~~l~rl~~ 397 (404)
T PRK09265 344 PIHDDEQFVLDLLLQEKVLLVQGTGFNWP-----------------EPDHFRIVTL--PRVDDLEEAIGRIGR 397 (404)
T ss_pred CCCCHHHHHHHHHHhCCEEEECchhhCCC-----------------CCCeEEEEeC--CCHHHHHHHHHHHHH
Confidence 2233 33333 79999999877421 1278999996 578999999999986
|
|
| >PRK15481 transcriptional regulatory protein PtsJ; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.9e-20 Score=241.72 Aligned_cols=287 Identities=14% Similarity=0.107 Sum_probs=211.7
Q ss_pred HHHHHHHHHHHhCC---CCCcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccC
Q psy15216 1439 IEKARNEVAQLIYA---DPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK 1515 (2602)
Q Consensus 1439 ~~~lr~~ia~~~g~---~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~ 1515 (2602)
..++|+.++++++. ++++|++|+|+++|+.+++.++. +|||+|++++|.|+.+...++.+ |++++.++.+
T Consensus 123 ~~~lr~~ia~~~~~~~~~~~~Iiit~G~~~al~~~~~~l~----~pgd~Vlv~~P~y~~~~~~~~~~---g~~~~~v~~~ 195 (431)
T PRK15481 123 SPELHAWAARWLRDDCPVAFEIDLTSGAIDAIERLLCAHL----LPGDSVAVEDPCFLSSINMLRYA---GFSASPVSVD 195 (431)
T ss_pred CHHHHHHHHHHHhhccCCcCeEEEecCcHHHHHHHHHHhC----CCCCEEEEeCCCcHHHHHHHHHc---CCeEEeeccC
Confidence 45688888888863 34689999999999999999987 89999999999999988777766 9999999987
Q ss_pred CCCCcChhHHHhhccCCceEEEEe-ccccccccccChH---HHHHHhhhc-CCEEEEecccccCcc--ccc-CC-CCCcc
Q psy15216 1516 NNGLITLSQLEEKICSDTILVSVM-LVNNEIGVIQPIL---EIGELCRSK-GVIFHCDAAQAVGKI--DIN-IQ-NYKVD 1586 (2602)
Q Consensus 1516 ~~~~id~d~l~~~i~~~t~lv~l~-~~~n~tG~~~~l~---~I~~ia~~~-gi~vivD~a~~~g~~--~~~-l~-~~~~D 1586 (2602)
.++ +|++++++++++++++++++ +||||||.+++.+ +|.++|++| ++++|+|++++.-.. ..+ +. ..+..
T Consensus 196 ~~g-~~~~~l~~~~~~~~k~i~~~p~p~NPTG~~~s~~~~~~l~~la~~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~v 274 (431)
T PRK15481 196 AEG-MQPEKLERALAQGARAVILTPRAHNPTGCSLSARRAAALRNLLARYPQVLVIIDDHFALLSSSPYHSVIPQTTQRW 274 (431)
T ss_pred CCC-CCHHHHHHHHhcCCCEEEECCCCCCCCCccCCHHHHHHHHHHHHhcCCceEEecCchhhhccCCCCCCCcCCCCCE
Confidence 654 89999999998889988887 9999999999965 899999999 999999999752110 011 11 11234
Q ss_pred EEEEccccccCCCc--eEEEEEecCCCCccccccccCCccccCCCCCcchhHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Q psy15216 1587 LMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRL--ARIEMKEELKRILFLQ 1662 (2602)
Q Consensus 1587 ~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~--~~~~~~~~~~~~~~l~ 1662 (2602)
+++.||+|.+| +| +||++.++++++.+..... ....+.+...+.++..+|+. ....+++.++.+++.+
T Consensus 275 i~~~SfSK~~~-~GlRiG~~i~~~~~~~~~~~~~~-------~~~~~~s~~~q~a~~~~l~~~~~~~~l~~~~~~~~~~r 346 (431)
T PRK15481 275 ALIRSVSKALG-PDLRLAFVASDSATSARLRLRLN-------SGTQWVSHLLQDLVYACLTDPEYQARLAQARLFYAQRR 346 (431)
T ss_pred EEEeeeccccC-CCceeEEEeCCHHHHHHHHHHHh-------ccccCCCHHHHHHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 78889999888 68 8999998877666643221 11123455666666677762 2334677888899999
Q ss_pred HHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecC-CcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccC
Q psy15216 1663 KRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI-EGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAH 1739 (2602)
Q Consensus 1663 ~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 1739 (2602)
+++.+.|.+ . ++.+..|. .+.++++... +..++...| +||.+.+|..|... ...
T Consensus 347 ~~~~~~L~~-~-~~~~~~p~-----gg~f~~~~l~~~~~~~~~~l~~~gV~v~pg~~f~~~----------------~~~ 403 (431)
T PRK15481 347 QKLARALQQ-Y-GIAIPSPG-----DGLNLWLPLDTDSQATALTLAKSGWLVREGEAFGVS----------------APS 403 (431)
T ss_pred HHHHHHHHH-c-CCccccCC-----CeEEEEEECCCCHHHHHHHHHHCCcEEecCCccccC----------------CCC
Confidence 999999987 2 54432221 2223333322 345666555 89999999877432 012
Q ss_pred CeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1740 SSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1740 ~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
+++||+++.. +.++++.+++.|++.
T Consensus 404 ~~iRis~~~~-~~~~i~~~~~~l~~~ 428 (431)
T PRK15481 404 HGLRITLSTL-NDAEINRLAADLHQA 428 (431)
T ss_pred CeEEEEcCCC-ChHHHHHHHHHHHHH
Confidence 6899999864 579999999999874
|
|
| >cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn) | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.6e-20 Score=239.34 Aligned_cols=312 Identities=18% Similarity=0.157 Sum_probs=214.5
Q ss_pred HHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCC-
Q psy15216 1438 AIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN- 1516 (2602)
Q Consensus 1438 ~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~- 1516 (2602)
...++++.+++++|. +++++++|+|+|++.++.++. +++||+|+++.++|+++..++... |++++++++++
T Consensus 19 ~~~~~~~~la~~~~~--~~~~~~~sgt~al~~~l~~l~---~~~gd~vl~~~~~~~~~~~~~~~~---g~~~~~~~~~~~ 90 (352)
T cd00616 19 KVREFEKAFAEYLGV--KYAVAVSSGTAALHLALRALG---IGPGDEVIVPSFTFVATANAILLL---GATPVFVDIDPD 90 (352)
T ss_pred HHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHHHcC---CCCCCEEEeCCcchHHHHHHHHHc---CCeEEEEecCCC
Confidence 467899999999996 478889999999999999884 379999999999999987776554 99999999887
Q ss_pred CCCcChhHHHhhccCCceEEEEeccccccccccChHHHHHHhhhcCCEEEEecccccCcccccCC-CCCccEEEEccc--
Q psy15216 1517 NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQ-NYKVDLMSFSAH-- 1593 (2602)
Q Consensus 1517 ~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~~ia~~~gi~vivD~a~~~g~~~~~l~-~~~~D~~v~S~~-- 1593 (2602)
++.+|++++++++++++++|+++| ++|.+.|+++|.++|++||+++|+|++|++|....+.. ....|+.++|+|
T Consensus 91 ~~~~d~~~l~~~i~~~~~~v~~~~---~~G~~~~~~~i~~l~~~~~i~li~D~a~~~g~~~~~~~~~~~~d~~~~S~~~~ 167 (352)
T cd00616 91 TYNIDPELIEAAITPRTKAIIPVH---LYGNPADMDAIMAIAKRHGLPVIEDAAQALGATYKGRKVGTFGDAGAFSFHPT 167 (352)
T ss_pred cCCcCHHHHHHhcCcCCeEEEEEC---CCCCcCCHHHHHHHHHHcCCeEEEECCCCCCCeECCEEcccCcceeEEcCCCC
Confidence 688999999999999999999876 59999999999999999999999999999987543210 112578888877
Q ss_pred cccCCCceEEEEEec-CCCCccccccccCCccc--cCCCCCcch-hHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q psy15216 1594 KIYGPKGIGALYIRR-NPRTRIEAQIHGGGHEY--GLRSGTLAT-HQIVGMGEAFRL-ARIEMKEELKRILFLQKRLYNG 1668 (2602)
Q Consensus 1594 K~~gp~G~G~l~~~~-~~~~~l~~~~~g~~~~~--~~~~gt~~~-~~~~al~~aL~~-~~~~~~~~~~~~~~l~~~l~~~ 1668 (2602)
|+++....|+++.++ ++.+.+.+...++.... .+...+... ..+..+.+++.. ....++...++.+++.+++++.
T Consensus 168 K~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~l~~~~~~~~~~~~~~~~~~~~ 247 (352)
T cd00616 168 KNLTTGEGGAVVTNDEELAERARLLRNHGRDRDRFKYEHEILGYNYRLSEIQAAIGLAQLEKLDEIIARRREIAERYKEL 247 (352)
T ss_pred CCCcccCceEEEECCHHHHHHHHHHHHcCCCCCCCccccceeeeccCcCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 866432247777764 55555544332222111 011111110 111122222221 2234677888889999999999
Q ss_pred HhhcCCcEEEeCCCCC--CCCceEEEEEe---cCCcHHHHHhc--CCEEEccccccCCCCCChhHHH------HHcCCCc
Q psy15216 1669 LMESIEEIYINGDMNN--RIPHNLNISFN---FIEGESLLMAI--KDIAVSSGSACTSASLEPSYVL------RALGCND 1735 (2602)
Q Consensus 1669 L~~~~~gl~i~~~~~~--~~~~~~~~~~~---~~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~------~~~~~~~ 1735 (2602)
|.+ ++++.+..++.. ..+....+.++ ..+..++...| +||.+ +.+|.+....+.+.. ..++..+
T Consensus 248 L~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~gI~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 324 (352)
T cd00616 248 LAD-LPGIRLPDVPPGVKHSYHLYVIRLDPEAGESRDELIEALKEAGIET--RVHYPPLHHQPPYKKLLGYPPGDLPNAE 324 (352)
T ss_pred hcC-CCCccCCCCCCCCceeeEEEEEEECCcCCCCHHHHHHHHHHCCCCe--eeecCccccCHhhhhccCCCcCCChHHH
Confidence 987 788887755432 22334444444 34667777777 67754 345544322221110 0011112
Q ss_pred cccCCeEEEecCCCCCHHHHHHHHHHHH
Q psy15216 1736 ELAHSSIRFTIGRFTTEKEIDFTIKLLK 1763 (2602)
Q Consensus 1736 ~~~~~~iRls~~~~~t~edid~li~~L~ 1763 (2602)
....+.||++++.++|.+||++++++|+
T Consensus 325 ~~~~~~l~l~~~~~~t~~di~~i~~~l~ 352 (352)
T cd00616 325 DLAERVLSLPLHPSLTEEEIDRVIEALR 352 (352)
T ss_pred HHHhCeEEccCCCCCCHHHHHHHHHHhC
Confidence 2234789999999999999999999874
|
AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein |
| >PRK09082 methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.5e-20 Score=238.52 Aligned_cols=319 Identities=14% Similarity=0.103 Sum_probs=225.0
Q ss_pred CCCHHHHHHHHHHHhhc-cCCCCCccchhHHHHHHHHHHHHHHHHHHhCCC--CC-cEEEeCCHHHHHHHHHHhhhhhhc
Q psy15216 1404 PIDPRVVDKMIPYLRVQ-FGNPASRNHIYGWTAEKAIEKARNEVAQLIYAD--PR-EIIWTSGATESNNLAIKGAAHFYK 1479 (2602)
Q Consensus 1404 ~~~~~v~eal~~~l~~~-~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~--~~-~iv~t~gaT~al~~al~~l~~~~~ 1479 (2602)
+.++.+.+++.+.+... ..++. ..+..++.+.+.+.+.+++|.+ ++ +|++|+|+++|+..++.++.
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~Y~~------~~G~~~lr~~~a~~l~~~~~~~~~~~~~i~~t~G~~~al~~~~~~~~---- 112 (386)
T PRK09082 43 DGPPYLVEALAYAMAAGHNQYPP------MTGVAALREAIAAKTARLYGRQYDADSEITVTAGATEALFAAILALV---- 112 (386)
T ss_pred CCCHHHHHHHHHHHHcCCCCCCC------CCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCHHHHHHHHHHHHc----
Confidence 45677888888876532 11221 1223345566666666677763 33 79999999999999999887
Q ss_pred cCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCC-CCCcChhHHHhhccCCceEEEEeccccccccccC---hHHHH
Q psy15216 1480 KRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIG 1555 (2602)
Q Consensus 1480 ~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~-~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~---l~~I~ 1555 (2602)
++||+|++++|.|+++...++.+ |.+++.++.+. ++.+|+++++++++++++++++++|+||||.+++ +++|.
T Consensus 113 ~~gd~Vli~~p~y~~~~~~~~~~---g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~i~ 189 (386)
T PRK09082 113 RPGDEVIVFDPSYDSYAPAIELA---GGRAVRVALQPPDFRVDWQRFAAAISPRTRLIILNTPHNPSGTVWSAADMRALW 189 (386)
T ss_pred CCCCEEEEeCCCchhhHHHHHHc---CCEEEEEecCcccccCCHHHHHHhcCccceEEEEeCCCCCCCcCCCHHHHHHHH
Confidence 89999999999999988777665 99999999864 5779999999999999999999999999999876 77889
Q ss_pred HHhhhcCCEEEEecccccCcc----cc---cCCC-CCccEEEEccccccCCCc--eEEEEEecCCCCccccccccCCccc
Q psy15216 1556 ELCRSKGVIFHCDAAQAVGKI----DI---NIQN-YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEY 1625 (2602)
Q Consensus 1556 ~ia~~~gi~vivD~a~~~g~~----~~---~l~~-~~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~ 1625 (2602)
++|++||+++|+|++|+.... .. .+.. .+..+++.|++|.+|++| +||+++++++++.+.....
T Consensus 190 ~~a~~~~i~li~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~iv~~~~l~~~~~~~~~------ 263 (386)
T PRK09082 190 QLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPELRERAFVVSSFGKTYHVTGWKVGYCVAPAALSAEFRKVHQ------ 263 (386)
T ss_pred HHHHHCCEEEEEehhhhhhccCCCCCCChhhCcCccCcEEEEeechhhccchhhhhhhhhCCHHHHHHHHHHHh------
Confidence 999999999999999753211 11 1111 134588889999888888 8999998877666654321
Q ss_pred cCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEe---cCCcHHH
Q psy15216 1626 GLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN---FIEGESL 1702 (2602)
Q Consensus 1626 ~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~---~~~~~~~ 1702 (2602)
....+.+.+.+.++...+.......++.+..++++++++.+.|.+ .++.+..+ .. .....+.++ ..+..++
T Consensus 264 -~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~--~~~~~~~~-~g--~~~~~~~~~~~~~~~~~~~ 337 (386)
T PRK09082 264 -YNTFTVNTPAQLALADYLRAEPEHYLELPAFYQAKRDRFRAALAN--SRFKLLPC-EG--TYFQLVDYSAISDLDDVEF 337 (386)
T ss_pred -hhcCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHh--CCCcccCC-Ce--eEEEEEeccccCCCCHHHH
Confidence 112234555555555555422345677778888999999999977 45554322 11 111122333 2345566
Q ss_pred HHhc---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1703 LMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1703 ~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
...| +||.+.+|..|... ....+++|++++. ++++++..+++|++
T Consensus 338 ~~~l~~~~~v~v~pg~~f~~~---------------~~~~~~~Ri~~~~--~~~~l~~~~~rl~~ 385 (386)
T PRK09082 338 CQWLTREHGVAAIPLSVFYAD---------------PFPHRLVRLCFAK--QEETLDAAAERLCQ 385 (386)
T ss_pred HHHHHHhCCEEEeCcHHhCCC---------------CCCCCEEEEEecC--CHHHHHHHHHHHhh
Confidence 6654 69999999876431 0113789999985 68899999988874
|
|
| >PRK07777 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.6e-20 Score=237.44 Aligned_cols=316 Identities=16% Similarity=0.146 Sum_probs=218.5
Q ss_pred CCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHH----HhCC--CCC-cEEEeCCHHHHHHHHHHhcccc
Q psy15216 9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQ----LIYA--DPR-EIIWTSGATESNNLAIKGAAHF 81 (2602)
Q Consensus 9 ~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~----~~g~--~~~-~Iv~t~g~T~al~~~~~~l~~~ 81 (2602)
.|+.+.+++.+.+.... . .|.... ...++|+.+++ .+|. +++ +|++|+|+++|+.+++.++.
T Consensus 38 ~~~~~~~~~~~~~~~~~----~-~Y~~~~----g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~~~-- 106 (387)
T PRK07777 38 GPPEMLEAAQEAIAGGV----N-QYPPGP----GIPELRAAIAAQRRRRYGLEYDPDTEVLVTVGATEAIAAAVLGLV-- 106 (387)
T ss_pred CCHHHHHHHHHHHhcCC----C-CCCCCC----CCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHHHHHhc--
Confidence 35667777776664311 0 111111 23445555554 4565 354 79999999999999998887
Q ss_pred cccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCC---CccChHHHHhhccCCceEEEEecccCccccccc---H
Q psy15216 82 YKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN---GLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---I 155 (2602)
Q Consensus 82 ~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~---~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~---l 155 (2602)
++||+|+++.|.|+++...+... |.+++.++.+++ +.+|++++++++++++++|++++|+||||.+++ +
T Consensus 107 --~~gd~vli~~p~y~~~~~~~~~~---g~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~ 181 (387)
T PRK07777 107 --EPGDEVLLIEPYYDSYAAVIAMA---GAHRVPVPLVPDGRGFALDLDALRAAVTPRTRALIVNSPHNPTGTVLTAAEL 181 (387)
T ss_pred --CCCCEEEEeCCCchhhHHHHHHC---CCEEEEeecCCccCCCcCCHHHHHHhcCcccEEEEEcCCCCCCCccCCHHHH
Confidence 79999999999999987666555 889888887653 468999999999999999999999999999987 7
Q ss_pred HHHHHHHHhcCCEEEEeccccccc------cccc-CCC-CCccEEEeccccccCCCC--cEEEEEecCCCCcccceecCC
Q psy15216 156 LEIGELCRSKGVIFHCDAAQAVGK------IDIN-IQN-YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGG 225 (2602)
Q Consensus 156 ~~I~~la~~~g~~livD~a~a~g~------~~~d-l~~-~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g~ 225 (2602)
++|.++|++|++++|+|++|+... .++. +.. .+.++++.|+||.||++| +||+++++++++.+.....
T Consensus 182 ~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~l~~~~~~~~~-- 259 (387)
T PRK07777 182 AAIAELAVEHDLLVITDEVYEHLVFDGARHLPLATLPGMRERTVTISSAAKTFNVTGWKIGWACGPAPLIAAVRAAKQ-- 259 (387)
T ss_pred HHHHHHHHhcCcEEEEeccchhcccCCCCcccHhhCCCCcCcEEEEeechhhccCcCceeEEEecCHHHHHHHHHHHh--
Confidence 778899999999999999985321 1111 111 235788999999999888 7999998877666543221
Q ss_pred CccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEc---ccC
Q psy15216 226 GHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN---FIE 302 (2602)
Q Consensus 226 ~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~---~~~ 302 (2602)
....+.+.+...++..++.....+.+..++++.++++.+.+.|.+ .++.+..+.. ....++.++ ..+
T Consensus 260 -----~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~--~~~~~~~~~g---~~~~~~~~~~~~~~~ 329 (387)
T PRK07777 260 -----YLTYVGGAPFQPAVAHALDHEDAWVAALRDSLQAKRDRLAAGLAE--AGFEVHDSAG---TYFLCADPRPLGYDD 329 (387)
T ss_pred -----hcccCCCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHh--CCCCccCCCc---ceEEEecccccCCCC
Confidence 011123333344444555433455677788889999999999977 3665553321 122222332 125
Q ss_pred hhHHHHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 303 GESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 303 ~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
+.++...| +||.+.+|..|... .....+++||+++. .+++++..+++|++
T Consensus 330 ~~~~~~~l~~~~gv~v~pg~~f~~~--------------~~~~~~~~Ri~~~~--~~~~l~~~l~~l~~ 382 (387)
T PRK07777 330 GTEFCRALPERVGVAAIPMSVFYDP--------------ADAWNHLVRFAFCK--RDDTLDEAIRRLRA 382 (387)
T ss_pred HHHHHHHHHHhCCEEEeCchHhCCC--------------CcCCCCeEEEEecC--CHHHHHHHHHHHHH
Confidence 56777777 59999999766431 01123789999984 68999999999885
|
|
| >cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT) | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.1e-20 Score=241.09 Aligned_cols=329 Identities=19% Similarity=0.201 Sum_probs=225.7
Q ss_pred CCCCHHHHHHHHHHHhhcc--CCCCCccchhHHHHHHHHH-HHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhc
Q psy15216 1403 TPIDPRVVDKMIPYLRVQF--GNPASRNHIYGWTAEKAIE-KARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYK 1479 (2602)
Q Consensus 1403 ~~~~~~v~eal~~~l~~~~--~np~~~~~~~~~~~~~~~~-~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~ 1479 (2602)
...++.+.+++.+.+...+ ++|+...+. +......++ ..++.+++++|+++..|+++ |+|+|+..++.++.
T Consensus 29 ~~~~~~v~~a~~~~~~~~~~~g~~~~~~~~-~~~~~~~l~~~~~~~~~~~~g~~~~~v~~~-sgt~a~~~~l~~l~---- 102 (402)
T cd00378 29 NFTSPAVMEAMGSDLTNKYAEGYPGKRYYG-GCEYVDEIEDLAIERAKKLFGAEYANVQPH-SGSQANLAVYFALL---- 102 (402)
T ss_pred CcCCHHHHHHhcccccccccCCCCCCcccC-CchHHHHHHHHHHHHHHHHhCCCceeeecC-CcHHHHHHHHHHhc----
Confidence 4568899999988764433 566553222 333333334 46778899999976555555 56899999999987
Q ss_pred cCCCEEEEcCCCCcchHHHHHH--HHhCCcEEEEeccCC---CCCcChhHHHhhcc-CCceEEEEeccccccccccChHH
Q psy15216 1480 KRGKHIITVQTEHKSVLDSIRK--LENDGFRVTYLKPKN---NGLITLSQLEEKIC-SDTILVSVMLVNNEIGVIQPILE 1553 (2602)
Q Consensus 1480 ~~gd~Vlv~~~~~~s~~~~~~~--~~~~G~~v~~v~~~~---~~~id~d~l~~~i~-~~t~lv~l~~~~n~tG~~~~l~~ 1553 (2602)
++||+|++++++|+++...+.. ++..|.++..++.+. ++.+|++++++++. ++++++++++++| |...|+++
T Consensus 103 ~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~i~~~~~~~v~~~~~~~--~~~~~~~~ 180 (402)
T cd00378 103 EPGDTIMGLDLSHGGHLTHGSFTKVSASGKLFESVPYGVDPETGLIDYDALEKMALEFKPKLIVAGASAY--PRPIDFKR 180 (402)
T ss_pred CCCCEEEEecCccCccccccccccccccceeEEEecCCcCcccCCcCHHHHHHHHHhCCCCEEEecCccc--CCCcCHHH
Confidence 8999999999999987655332 344587777776543 57899999999995 6899999988866 46779999
Q ss_pred HHHHhhhcCCEEEEecccccCcc-----cccCCCCCccEEEEcccc-ccCCCceEEEEEec-CCCCccccccccCCcccc
Q psy15216 1554 IGELCRSKGVIFHCDAAQAVGKI-----DINIQNYKVDLMSFSAHK-IYGPKGIGALYIRR-NPRTRIEAQIHGGGHEYG 1626 (2602)
Q Consensus 1554 I~~ia~~~gi~vivD~a~~~g~~-----~~~l~~~~~D~~v~S~~K-~~gp~G~G~l~~~~-~~~~~l~~~~~g~~~~~~ 1626 (2602)
|+++|++||+++++|++|+.|.. +.++. ++|++++|+|| +.||+| |+++.++ ++.+.+..... .
T Consensus 181 I~~l~~~~~~~li~D~a~~~g~~~~g~~~~~~~--~~dv~~~s~sK~l~G~~g-g~i~~~~~~~~~~l~~~~~------~ 251 (402)
T cd00378 181 FREIADEVGAYLLVDMAHVAGLVAGGVFPNPLP--GADVVTTTTHKTLRGPRG-GLILTRKGELAKKINSAVF------P 251 (402)
T ss_pred HHHHHHhcCCEEEEEccchhhhhhcccCCCccc--CCcEEEeccccCCCCCCc-eEEEeccHHHHHHHHHHhC------c
Confidence 99999999999999999876543 22333 57999999999 547886 7777766 66655543221 1
Q ss_pred CCCCCcchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEec--CCcHHHH
Q psy15216 1627 LRSGTLATHQIVGMGEAFRLARI-EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF--IEGESLL 1703 (2602)
Q Consensus 1627 ~~~gt~~~~~~~al~~aL~~~~~-~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~--~~~~~~~ 1703 (2602)
...+++....+.++..++..... .+++.++++.++++++++.|.+ . |+.+...+.. .....+.++. .+...+.
T Consensus 252 ~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~--~~~v~v~~~~~~~~~~~~~ 327 (402)
T cd00378 252 GLQGGPHLHVIAAKAVALKEALEPEFKAYAKQVVENAKALAEALKE-R-GFKVVSGGTD--NHLVLVDLRPKGITGKAAE 327 (402)
T ss_pred cccCCchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh-C-CCeEeecCCC--CeEEEEeCCccCCCHHHHH
Confidence 12345556667776677764333 5678888899999999999987 3 7766532221 2233333332 2334444
Q ss_pred Hhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCC----CHHHHHHHHHHHHHh
Q psy15216 1704 MAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFT----TEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1704 ~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~----t~edid~li~~L~~~ 1765 (2602)
..| +||.+.+....... .+ .....++|++++..+ +.+|++++++.|++.
T Consensus 328 ~~l~~~gI~v~~~~~p~~~----------~~---~~~~~~lRi~~~~~~~~~~~~~di~~~~~~l~~~ 382 (402)
T cd00378 328 DALEEAGITVNKNTLPWDP----------SS---PFVPSGIRIGTPAMTTRGMGEEEMEEIADFIARA 382 (402)
T ss_pred HHHHHcCcEEcCCcCCCCC----------CC---CCCCCeeEecCHHHHHhCCCHHHHHHHHHHHHHH
Confidence 444 69999864322111 00 112368999987654 689999999999974
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites. |
| >PRK07683 aminotransferase A; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.6e-20 Score=236.78 Aligned_cols=313 Identities=16% Similarity=0.183 Sum_probs=221.6
Q ss_pred CCCHHHHHHHHHHHhhc-cCCCCCccchhHHHHHHHHHHHHHHHHHHh----CC--CCC-cEEEeCCHHHHHHHHHHhhh
Q psy15216 1404 PIDPRVVDKMIPYLRVQ-FGNPASRNHIYGWTAEKAIEKARNEVAQLI----YA--DPR-EIIWTSGATESNNLAIKGAA 1475 (2602)
Q Consensus 1404 ~~~~~v~eal~~~l~~~-~~np~~~~~~~~~~~~~~~~~lr~~ia~~~----g~--~~~-~iv~t~gaT~al~~al~~l~ 1475 (2602)
+.++.+.+++.+.+... ..++.. ....++|+++++++ |. +++ +|++|+|+++|+.+++.++.
T Consensus 41 ~~~~~~~~a~~~~~~~~~~~Y~~~----------~g~~~lr~~ia~~l~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~ 110 (387)
T PRK07683 41 PTPSHVKEAAKRAITENYTSYTHN----------AGLLELRKAACNFVKDKYDLHYSPESEIIVTIGASEAIDIAFRTIL 110 (387)
T ss_pred CCCHHHHHHHHHHHhcCCCCCCCC----------CCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhC
Confidence 45677888888887642 122211 12456777777776 43 677 89999999999999998876
Q ss_pred hhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCC-CCCcChhHHHhhccCCceEEEEeccccccccccC---h
Q psy15216 1476 HFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---I 1551 (2602)
Q Consensus 1476 ~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~-~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~---l 1551 (2602)
++||+|++++|.|+.+...+..+ |++++.++.+. ++.+|++++++.++++++++++++|+||||.+++ +
T Consensus 111 ----~~gd~Vl~~~p~y~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~i~~p~NPtG~~~s~~~~ 183 (387)
T PRK07683 111 ----EPGTEVILPAPIYPGYEPIIRLC---GAKPVFIDTRSTGFRLTAEALENAITEKTRCVVLPYPSNPTGVTLSKEEL 183 (387)
T ss_pred ----CCCCEEEEcCCCccchHHHHHHc---CCEEEEeecCcccCCCCHHHHHHhcCcCceEEEEeCCCCCCCcCCCHHHH
Confidence 79999999999999987777655 99999999875 4557899999999999999999999999999988 7
Q ss_pred HHHHHHhhhcCCEEEEecccccCc---ccccCCCC----CccEEEEccccccCCCc--eEEEEEecCCCCccccccccCC
Q psy15216 1552 LEIGELCRSKGVIFHCDAAQAVGK---IDINIQNY----KVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGG 1622 (2602)
Q Consensus 1552 ~~I~~ia~~~gi~vivD~a~~~g~---~~~~l~~~----~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~~g~~ 1622 (2602)
++|+++|+++|+++|+|++++... .+.++..+ +..+++.|++|.+|++| +||+++++++++.+....
T Consensus 184 ~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~pGlRiG~i~~~~~l~~~~~~~~---- 259 (387)
T PRK07683 184 QDIADVLKDKNIFVLSDEIYSELVYEQPHTSIAHFPEMREKTIVINGLSKSHSMTGWRIGFLFAPSYLAKHILKVH---- 259 (387)
T ss_pred HHHHHHHHHcCeEEEEecccccceeCCCcCChhhccCCcCCeEEEeeccccccCccceeEEEEcCHHHHHHHHHHH----
Confidence 788999999999999999986432 11122221 23578889999888778 899999987766654322
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEec--CCcH
Q psy15216 1623 HEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF--IEGE 1700 (2602)
Q Consensus 1623 ~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~--~~~~ 1700 (2602)
.+...+++...+.++..+|......++..++++.+.++++.+.|.+ .++.+..+.. .......++. .+..
T Consensus 260 ---~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~---~~~~~~~~~~~~~~~~ 331 (387)
T PRK07683 260 ---QYNVTCASSISQYAALEALTAGKDDAKMMRHQYKKRRDYVYNRLIS--MGLDVEKPTG---AFYLFPSIGHFTMSSF 331 (387)
T ss_pred ---HhccCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHH--cCCcccCCCe---eEEEEEecccCCCCHH
Confidence 1111223334444454555532334667778888889999999977 2544432211 1111222222 2334
Q ss_pred HHHHhc---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1701 SLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1701 ~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
++...+ +||.+.+|..|... ..+++||+++. +.+++..++++|.+
T Consensus 332 ~~~~~ll~~~gI~v~pg~~f~~~-----------------~~~~~Ri~~~~--~~~~~~~al~~l~~ 379 (387)
T PRK07683 332 DFALDLVEEAGLAVVPGSAFSEY-----------------GEGYVRLSYAY--SIETLKEGLDRLEA 379 (387)
T ss_pred HHHHHHHHhCCEEEcCchhhCCC-----------------CCCeEEEEecC--CHHHHHHHHHHHHH
Confidence 555432 79999999877432 13799999985 68899999999886
|
|
| >PRK08068 transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.7e-20 Score=237.81 Aligned_cols=310 Identities=13% Similarity=0.107 Sum_probs=218.6
Q ss_pred CCCHHHHHHHHHHHhhc--cCCCCCccchhHHHHHHHHHHHHHHHHHHh----C--CCCC-cEEEeCCHHHHHHHHHHhh
Q psy15216 1404 PIDPRVVDKMIPYLRVQ--FGNPASRNHIYGWTAEKAIEKARNEVAQLI----Y--ADPR-EIIWTSGATESNNLAIKGA 1474 (2602)
Q Consensus 1404 ~~~~~v~eal~~~l~~~--~~np~~~~~~~~~~~~~~~~~lr~~ia~~~----g--~~~~-~iv~t~gaT~al~~al~~l 1474 (2602)
+.++.+.+++.+.+... ..++.. ....++|+++++++ | ++++ +|++|+|+++++..++.++
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~Y~~~----------~g~~~lr~aia~~~~~~~g~~~~~~~~i~it~G~~~~l~~~~~~~ 114 (389)
T PRK08068 45 PTPEHIVEALQEAAENPANHKYSPF----------RGYPFLKEAAADFYKREYGVTLDPETEVAILFGGKAGLVELPQCL 114 (389)
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCCC----------CCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHHHHHHHHh
Confidence 45567888888877531 122211 12456778888776 5 5777 7999999999999998888
Q ss_pred hhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCC--CCCcChhHHHhhccCCceEEEEeccccccccccCh-
Q psy15216 1475 AHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPI- 1551 (2602)
Q Consensus 1475 ~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l- 1551 (2602)
. ++||+|++++|+|+.+...++.+ |++++.++.+. ++.+|++++++++++++++|++++|+||||.+++.
T Consensus 115 ~----~~gd~vlv~~P~y~~~~~~~~~~---g~~~~~i~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~P~NPTG~~~s~~ 187 (389)
T PRK08068 115 M----NPGDTILVPDPGYPDYLSGVALA---RAQFETMPLIAENNFLPDYTKIPEEVAEKAKLMYLNYPNNPTGAVATKA 187 (389)
T ss_pred C----CCCCEEEEcCCCCcchHHHHHhc---CCEEEEeecccccCCCCCHHHHHHhccccceEEEEECCCCCCCCcCCHH
Confidence 7 89999999999999988776665 99999999875 35689999999998899999999999999999995
Q ss_pred --HHHHHHhhhcCCEEEEeccccc----CcccccC---CC-CCccEEEEccccccCCCc--eEEEEEecCCCCccccccc
Q psy15216 1552 --LEIGELCRSKGVIFHCDAAQAV----GKIDINI---QN-YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIH 1619 (2602)
Q Consensus 1552 --~~I~~ia~~~gi~vivD~a~~~----g~~~~~l---~~-~~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~~ 1619 (2602)
++|+++|++|++++|+|+++.. +..+.++ .. .+..+++.|++|.+|++| +||++.++++++.+.....
T Consensus 188 ~~~~l~~la~~~~~~ii~Deay~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~l~~~l~~~~~ 267 (389)
T PRK08068 188 FFEETVAFAKKHNIGVVHDFAYGAIGFDGQKPVSFLQTPGAKDVGIELYTLSKTFNMAGWRVAFAVGNESVIEAINLLQD 267 (389)
T ss_pred HHHHHHHHHHHcCeEEEEehhhhhhccCCCCCcChhhCCCccCCEEEEecchhccCCccceeEeEecCHHHHHHHHHHHh
Confidence 5778889999999999999852 1111111 11 123478889999888888 8999998877766644321
Q ss_pred cCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEE-EEEe--c
Q psy15216 1620 GGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLN-ISFN--F 1696 (2602)
Q Consensus 1620 g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~-~~~~--~ 1696 (2602)
.+..++++..+.. +..++......++..++++.+.++++.+.|.+ . ++.+.. +...+ +++. .
T Consensus 268 ------~~~~~~~~~~q~~-~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~-~-g~~~~~------~~g~~~~~v~~~~ 332 (389)
T PRK08068 268 ------HLFVSLFGAIQDA-AIEALLSDQSCVAELVARYESRRNAFISACRE-I-GWEVDA------PKGSFFAWMPVPK 332 (389)
T ss_pred ------hccCCCChHHHHH-HHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH-C-CCcccC------CCeeEEEEEECCC
Confidence 1112233333333 33444322345677888889999999999977 3 554432 22222 2332 2
Q ss_pred -CCcHHHHHhc---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1697 -IEGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1697 -~~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
.+..++...| +||.+++|..|... ..+++||+++. +.+.+..+++.|++
T Consensus 333 ~~~~~~~~~~l~~~~gi~v~pg~~f~~~-----------------~~~~iRi~~~~--~~~~l~~al~~l~~ 385 (389)
T PRK08068 333 GYTSEQFADLLLEKAHVAVAPGNGFGEH-----------------GEGYVRVGLLT--DEERLREAVERIGK 385 (389)
T ss_pred CCCHHHHHHHHHHhCCEEEecchHhCcc-----------------CCCeEEEEEcC--CHHHHHHHHHHHHH
Confidence 2456676665 59999998876431 12799999973 56777777777765
|
|
| >PRK07568 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-19 Score=237.59 Aligned_cols=316 Identities=15% Similarity=0.177 Sum_probs=220.1
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHh-----CCCCCcEEEeCCHHHHHHHHHHhhhhhh
Q psy15216 1404 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI-----YADPREIIWTSGATESNNLAIKGAAHFY 1478 (2602)
Q Consensus 1404 ~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~-----g~~~~~iv~t~gaT~al~~al~~l~~~~ 1478 (2602)
+.++.+.+++.+.......++.. ....++|+++++++ ++++++|++|+|+++|+++++.++.
T Consensus 43 ~~~~~~~~a~~~~~~~~~~Y~~~----------~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~--- 109 (397)
T PRK07568 43 KTPEVFFEAIKNYDEEVLAYSHS----------QGIPELREAFAKYYKKWGIDVEPDEILITNGGSEAILFAMMAIC--- 109 (397)
T ss_pred CCCHHHHHHHHHHhcCCcCcCCC----------CCCHHHHHHHHHHHHHhCCCCCcceEEEcCChHHHHHHHHHHhc---
Confidence 45777888887765433223221 12467888888887 4678899999999999999998876
Q ss_pred ccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCC-CC-C-cChhHHHhhccCCceEEEEeccccccccccC---hH
Q psy15216 1479 KKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NG-L-ITLSQLEEKICSDTILVSVMLVNNEIGVIQP---IL 1552 (2602)
Q Consensus 1479 ~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~-~~-~-id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~---l~ 1552 (2602)
++||+|++++|.|+.+....+. .|++++.++.+. ++ . .+++++++++++++++|++++|+||||.+++ ++
T Consensus 110 -~~gd~Vl~~~p~y~~~~~~~~~---~g~~~~~v~~~~~~g~~~~~~~~l~~~~~~~~~~v~i~~p~NPtG~~~~~~~~~ 185 (397)
T PRK07568 110 -DPGDEILVPEPFYANYNGFATS---AGVKIVPVTTKIEEGFHLPSKEEIEKLITPKTKAILISNPGNPTGVVYTKEELE 185 (397)
T ss_pred -CCCCEEEEecCCCccHHHHHHH---cCCEEEEeecCcccCCCCCCHHHHHHhcCccceEEEEECCCCCCCccCCHHHHH
Confidence 8999999999999887655444 499999998863 33 2 3679999999999999999999999999997 77
Q ss_pred HHHHHhhhcCCEEEEecccccC----ccc---ccCCC-CCccEEEEccccccCCCc--eEEEEEe-cCCCCccccccccC
Q psy15216 1553 EIGELCRSKGVIFHCDAAQAVG----KID---INIQN-YKVDLMSFSAHKIYGPKG--IGALYIR-RNPRTRIEAQIHGG 1621 (2602)
Q Consensus 1553 ~I~~ia~~~gi~vivD~a~~~g----~~~---~~l~~-~~~D~~v~S~~K~~gp~G--~G~l~~~-~~~~~~l~~~~~g~ 1621 (2602)
+|+++|+++|+++|+|+++..- ... ..+.. ...-+++.|+||.+|++| +||++++ +++++.+.....
T Consensus 186 ~i~~~~~~~~~~ii~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~~~~~~~~~~~~~~~~~~-- 263 (397)
T PRK07568 186 MLAEIAKKHDLFLISDEVYREFVYDGLKYTSALSLEGLEDRVIIIDSVSKRYSACGARIGCLISKNKELIAAAMKLCQ-- 263 (397)
T ss_pred HHHHHHHHCCcEEEEeccchhcccCCCCccChhhcCCCcCCEEEEecchhhccCCCcceEEEecCCHHHHHHHHHHhh--
Confidence 8999999999999999997521 111 12221 123377789999887777 8999985 445444332210
Q ss_pred CccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecCCcHH
Q psy15216 1622 GHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGES 1701 (2602)
Q Consensus 1622 ~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~ 1701 (2602)
...+.+...+.++..+++.....+++.++.+++.++.+.+.|.+ .+++.+..+... ....+.++..+..+
T Consensus 264 ------~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~p~g~---~~~~~~l~~~~~~~ 333 (397)
T PRK07568 264 ------ARLSPPTLEQIGAAALLDTPESYFDEVREEYKKRRDILYEELNK-IPGVVCEKPKGA---FYIIAKLPVDDAED 333 (397)
T ss_pred ------ccCCCCcHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHhc-CCCceecCCCcc---eEEEEecCCCCHHH
Confidence 01234445556666667533455677888889999999999977 566654432211 11122333334455
Q ss_pred HHHhc--------CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1702 LLMAI--------KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1702 ~~~~L--------~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
+...+ +||.+.+|..|... .....+++||+++. +.++++.+++.|++
T Consensus 334 ~~~~l~~~~~~~~~gv~v~pg~~f~~~--------------~~~~~~~iRls~~~--~~~~~~~~~~~l~~ 388 (397)
T PRK07568 334 FAKWLLTDFNYNGETVMVAPASGFYAT--------------PGLGKNEIRIAYVL--NEEDLKRAMEILKE 388 (397)
T ss_pred HHHHHHhhcccccceEEEeCchHhcCC--------------CCCCCCeEEEEEeC--CHHHHHHHHHHHHH
Confidence 65554 48999998876321 00113789999973 57999999999986
|
|
| >PRK03967 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=8e-20 Score=232.64 Aligned_cols=298 Identities=20% Similarity=0.155 Sum_probs=211.5
Q ss_pred CCCCCCC-CCCHHHHHHHHHHHhh--hcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHh
Q psy15216 1 MDYSATT-PIDPRVVDKMIPYLRV--QFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKG 77 (2602)
Q Consensus 1 Ld~a~~~-~~p~~v~~a~~~~l~~--~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~ 77 (2602)
|+.+.++ ++|+.+++++.+++.. ...+|.. ...++|+++++++|+++++|++|+|++++++.++.+
T Consensus 23 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~-----------g~~~lr~~ia~~~~~~~~~I~~t~G~~~~l~~~~~~ 91 (337)
T PRK03967 23 LDKNENPFDLPEELKEEIFEELKRVPFNRYPHI-----------TSDPLREAIAEFYGLDAENIAVGNGSDELISYLVKL 91 (337)
T ss_pred ecCCCCCCCCCHHHHHHHHHHhhcCccccCCCC-----------CHHHHHHHHHHHhCcCcceEEEcCCHHHHHHHHHHH
Confidence 4555555 6778899999887753 1222221 357789999999999999999999999999888765
Q ss_pred cccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHH
Q psy15216 78 AAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILE 157 (2602)
Q Consensus 78 l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~ 157 (2602)
+ +||+|+++.|.|+.+...++. .|++++.++.+.++.+|++.+++.+ ++++++++++|+||||.+++.++
T Consensus 92 ~------~gd~V~v~~P~y~~~~~~~~~---~g~~~~~v~~~~~~~~d~~~l~~~~-~~~~~v~~~~P~NPtG~~~~~~~ 161 (337)
T PRK03967 92 F------EGKHIVITPPTFGMYSFYAKL---NGIPVIDVPLKEDFTIDGERIAEKA-KNASAVFICSPNNPTGNLQPEEE 161 (337)
T ss_pred h------CCCeEEEeCCChHHHHHHHHH---cCCeEEEeecCCCCCcCHHHHHHhc-cCCCEEEEeCCCCCCCCCCCHHH
Confidence 3 589999999999876555444 4999999998877789999998875 67899999999999999999999
Q ss_pred HHHHHHhcCCEEEEeccccccc--cccc-CCCCCccEEEeccccccCCCC--cEEEEEecCCCCcccceecCCCcccccc
Q psy15216 158 IGELCRSKGVIFHCDAAQAVGK--IDIN-IQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLR 232 (2602)
Q Consensus 158 I~~la~~~g~~livD~a~a~g~--~~~d-l~~~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~ 232 (2602)
|.++++ +++++|+|++++.-. .... ......-+++.|++|.||++| +||+++++++++.+.....
T Consensus 162 l~~i~~-~~~~ii~De~y~~~~~~~~~~~~~~~~~vi~l~S~SK~~~l~GlRiG~iv~~~~~i~~~~~~~~--------- 231 (337)
T PRK03967 162 ILKVLE-TGKPVVLDEAYAEFSGKSLIGLIDEYPNLILLRTFSKAFGLAGIRAGYAIANEEIIDALYRIKP--------- 231 (337)
T ss_pred HHHHHh-cCCEEEEECchhhhcccchHHHHhhCCCEEEEecchHhhcchhhhheeeecCHHHHHHHHhhcC---------
Confidence 999995 799999999986321 1111 111122477789999999888 8999998887776654331
Q ss_pred ccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcccChhHHHHHh--
Q psy15216 233 SGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI-- 310 (2602)
Q Consensus 233 ~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L-- 310 (2602)
.++.+.++..++..+++. .++..+..++..+.++.+.+.|.+ . .. ++ ...++++.. + +...|
T Consensus 232 ~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~r~~l~~~L~~-~----~~-~~-----~~~~~~~~~-~---~~~~l~~ 295 (337)
T PRK03967 232 PFSLNILTMKIVRLALDH-YDLIEERIDYIIKERERVRRELGE-Y----AY-PS-----DANFLLLKL-D---AYDYLLE 295 (337)
T ss_pred CCCCCHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHHhcc-C----cC-CC-----CCcEEEEhH-H---HHHHHHH
Confidence 224455566666666652 223445555556667777777754 1 11 11 112233322 1 33443
Q ss_pred CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 311 KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 311 ~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
+||.++++... ..+++||+++ +.++.++++++|++
T Consensus 296 ~gi~v~~~~~~--------------------~~~~~Ri~~~---~~~~~~~l~~~l~~ 330 (337)
T PRK03967 296 NGIVVRKLSGR--------------------LEGHIRVTVG---KREENDEFIKALKE 330 (337)
T ss_pred CCEEEEeCCCC--------------------CCCeEEEecC---CHHHHHHHHHHHHH
Confidence 79999854211 1378999998 78899999999985
|
|
| >TIGR03538 DapC_gpp succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-19 Score=237.07 Aligned_cols=315 Identities=13% Similarity=0.091 Sum_probs=219.7
Q ss_pred CCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHh--------CCCCC-cEEEeCCHHHHHHHHHHh
Q psy15216 1403 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI--------YADPR-EIIWTSGATESNNLAIKG 1473 (2602)
Q Consensus 1403 ~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~--------g~~~~-~iv~t~gaT~al~~al~~ 1473 (2602)
..+++.+.+++.+.+.....++.. ....++|+++++++ |++++ +|++|+|+++++..++.+
T Consensus 40 ~~~~~~~~~a~~~~~~~~~~Y~~~----------~G~~~lr~aia~~~~~~~~~~~~~~~~~~i~it~Ga~~al~~~~~~ 109 (393)
T TIGR03538 40 HPTPAFVLEALRENLHGLSTYPTT----------KGLPELRQAIARWLERRFDLPTGVDPERHVLPVNGTREALFAFAQA 109 (393)
T ss_pred CCCCHHHHHHHHHHhhccCCCCCC----------CCCHHHHHHHHHHHHHhhCCcccCCCCceEEECCCcHHHHHHHHHH
Confidence 456778899998877544334432 11356777888777 35664 799999999999999998
Q ss_pred hhhhhccCCCE--EEEcCCCCcchHHHHHHHHhCCcEEEEeccCCC--CCcChhHHHhhccCCceEEEEecccccccccc
Q psy15216 1474 AAHFYKKRGKH--IITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN--GLITLSQLEEKICSDTILVSVMLVNNEIGVIQ 1549 (2602)
Q Consensus 1474 l~~~~~~~gd~--Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~--~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~ 1549 (2602)
+. ++||+ |++++|.|+.+....... |++++.++.+++ +.+|++++++++.++++++++++|+||||.++
T Consensus 110 l~----~~gd~~~vlv~~P~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~p~NPtG~~~ 182 (393)
T TIGR03538 110 VI----NPGQAPLVVMPNPFYQIYEGAALLA---GAEPYFLNCTAENGFLPDFDAVPESVWRRCQLLFVCSPGNPTGAVL 182 (393)
T ss_pred Hc----CCCCcceEEecCCCCcchHHHHHhc---CCeEEEeeccccCCCCCCHHHHHHHHhhcceEEEEeCCCCCcCccc
Confidence 87 89986 999999999987765554 999999998643 56899999999988999999999999999999
Q ss_pred C---hHHHHHHhhhcCCEEEEecccccCc-----cccc----CC-----CCCccEEEEccccccCCCc--eEEEEEecCC
Q psy15216 1550 P---ILEIGELCRSKGVIFHCDAAQAVGK-----IDIN----IQ-----NYKVDLMSFSAHKIYGPKG--IGALYIRRNP 1610 (2602)
Q Consensus 1550 ~---l~~I~~ia~~~gi~vivD~a~~~g~-----~~~~----l~-----~~~~D~~v~S~~K~~gp~G--~G~l~~~~~~ 1610 (2602)
+ +++|+++|++||+++|+|+++..-. .+.. .. ....-+++.|++|.++++| +||++.++++
T Consensus 183 s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~~~GlRvG~~i~~~~l 262 (393)
T TIGR03538 183 SLDTLKKLIELADQYGFIIASDECYSELYFDEGNPPAGLLQAAAQLGRDDFRRCLVFHSLSKRSNLPGLRSGFVAGDAEI 262 (393)
T ss_pred CHHHHHHHHHHHHHCCEEEEECcchhhcccCCCCCCcCHHHhcccccccccccEEEEecchhhcCCcccceEEEecCHHH
Confidence 9 7788889999999999999986321 1111 01 1122378889999888778 8999998877
Q ss_pred CCccccccccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceE
Q psy15216 1611 RTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNL 1690 (2602)
Q Consensus 1611 ~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~ 1690 (2602)
++.+.... .....+.+...+.++..++.. ...+++.+.++++.++++.+.|.+ . +.+. .|...
T Consensus 263 ~~~~~~~~-------~~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~L~~-~--~~~~------~p~gg 325 (393)
T TIGR03538 263 LKAFLRYR-------TYHGCAMPIPTQLASIAAWND-EQHVRENRALYREKFAAVLEILGQ-V--LDLE------LPDAG 325 (393)
T ss_pred HHHHHHHH-------HhhccCcCHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHHHHHHHh-h--Cccc------CCCee
Confidence 66554322 111223344444444344432 244667777888888888888876 2 2221 12233
Q ss_pred EE-EEec-CCcHHHHHhc---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1691 NI-SFNF-IEGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1691 ~~-~~~~-~~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
.+ ++.. .+..++...| +||.+.+|..|.... .......+++|||++. +.++++.++++|++
T Consensus 326 ~f~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~-----------~~~~~~~~~~Ris~~~--~~~~l~~~l~~l~~ 391 (393)
T TIGR03538 326 FYLWPKVPGDDEAFARALYEEENVTVLPGRFLAREA-----------EGVNPGEGRVRIALVA--PLEECVEAAERIRS 391 (393)
T ss_pred EEEEEECCCCHHHHHHHHHHHCCEEEeCCccccccc-----------cCCCCCCCEEEEEecC--CHHHHHHHHHHHHH
Confidence 33 3332 2456666554 699999998774310 0001123799999975 68999999999875
|
This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PLN02376 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.6e-20 Score=240.67 Aligned_cols=287 Identities=15% Similarity=0.185 Sum_probs=199.3
Q ss_pred HHHHHHHHHHHhC--------CCCCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEE
Q psy15216 43 IEKARNEVAQLIY--------ADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVT 114 (2602)
Q Consensus 43 ~~~~r~~lA~~~g--------~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~ 114 (2602)
..++|+++|++++ +++++|++|+|+++|+.+++.++. +|||.|+++.|.|+.+...+.. +.|++++
T Consensus 96 ~~~LR~aiA~~l~~~~g~~v~v~pe~Ivit~Ga~~al~~l~~~l~----~pGD~Vlv~~P~Y~~~~~~~~~--~~G~~vv 169 (496)
T PLN02376 96 LKKFRQAIAHFMGKARGGKVTFDPERVVMSGGATGANETIMFCLA----DPGDVFLIPSPYYAAFDRDLRW--RTGVEII 169 (496)
T ss_pred cHHHHHHHHHHHHHHhCCCCcCChhhEEEccchHHHHHHHHHHhC----CCCCEEEECCCCccchHHHHHh--hCCCEEE
Confidence 4556666666664 688999999999999999999998 8999999999999998765542 3499999
Q ss_pred EeccC--CCCccChHHHHhhc------cCCceEEEEecccCccccccc---HHHHHHHHHhcCCEEEEeccccccc----
Q psy15216 115 YLKPK--NNGLITLSQLEEKI------CSDTILVSVMLVNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQAVGK---- 179 (2602)
Q Consensus 115 ~v~~~--~~~~ld~e~l~~~i------~~~tklv~i~~~~npTG~~~~---l~~I~~la~~~g~~livD~a~a~g~---- 179 (2602)
.++++ +++.+|++.+++++ ..++|++++++||||||.+++ +++|+++|++|++++|+|++|+.-.
T Consensus 170 ~v~~~~~~~~~~~~~~le~a~~~a~~~~~~~k~l~l~nP~NPTG~~~s~e~l~~L~~~a~~~~i~lI~DEiY~~~~f~~~ 249 (496)
T PLN02376 170 PVPCSSSDNFKLTVDAADWAYKKAQESNKKVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIYAATVFAGG 249 (496)
T ss_pred EEeCCCCccCcCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccccccCCC
Confidence 99985 35678999997653 247899999999999999999 4557788999999999999987421
Q ss_pred cccc---C-CC-----CCcc--EEEeccccccCCCC--cEEEEEecC-CCCcccceecCCCccccccccCcchhHHHHHH
Q psy15216 180 IDIN---I-QN-----YKVD--LMSFSAHKIYGPKG--IGALYIRRN-PRTRIEAQIHGGGHEYGLRSGTLATHQIVGMG 245 (2602)
Q Consensus 180 ~~~d---l-~~-----~~~D--~~~~S~~K~~Gp~G--~G~l~~~~~-~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~ 245 (2602)
.... + .+ .+.+ +++.|+||.||++| +||++.+++ +...+.... ..+..+.....++.
T Consensus 250 ~~~si~~l~~~~~~~~~~~~~v~vv~S~SK~~glpGlRvG~li~~~~~l~~~~~~~~---------~~~~vs~~~Q~a~~ 320 (496)
T PLN02376 250 DFVSVAEVVNDVDISEVNVDLIHIVYSLSKDMGLPGFRVGIVYSFNDSVVSCARKMS---------SFGLVSSQTQLMLA 320 (496)
T ss_pred CcccHHHhhccccccccCCCeEEEEEeccccCCCCcceEEEEEECCHHHHHHHHHHh---------hcCCCCHHHHHHHH
Confidence 1111 1 01 1123 45689999999888 899998543 222222111 12334555555555
Q ss_pred HHHH---HHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc---cCh-------hHHHHHh--
Q psy15216 246 EAFR---LARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF---IEG-------ESLLMAI-- 310 (2602)
Q Consensus 246 ~al~---~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~---~~~-------~~~~~~L-- 310 (2602)
..|+ +....+.+.++++.+.++.+.+.|.+ .++....+. .+.++++.. .+. .++...+
T Consensus 321 ~~L~d~~~~~~~l~~~r~~l~~r~~~l~~~L~~--~gi~~~~~~-----aG~flwi~l~~~~~~~~~~~~e~~l~~~ll~ 393 (496)
T PLN02376 321 SMLSDDQFVDNFLMESSRRLGIRHKVFTTGIKK--ADIACLTSN-----AGLFAWMDLRHLLRDRNSFESEIELWHIIID 393 (496)
T ss_pred HHhCChhHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCcccCCC-----ceEEEEEEchhhhccCCchhHHHHHHHHHHH
Confidence 5664 22344556677788888888888876 355544331 223344432 111 2344444
Q ss_pred -CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 311 -KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 311 -~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
.||.+.+|..|... ..+|+||+++. .++++++..+++|++.
T Consensus 394 ~~gV~v~pGs~F~~~-----------------~~g~~Ri~fa~-~~~~~l~~al~rl~~~ 435 (496)
T PLN02376 394 KVKLNVSPGSSFRCT-----------------EPGWFRICFAN-MDDDTLHVALGRIQDF 435 (496)
T ss_pred cCCEEEeCccccCCC-----------------CCCEEEEEeeC-CCHHHHHHHHHHHHHH
Confidence 49999999877431 13899999984 3568888888888853
|
|
| >PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.9e-20 Score=237.02 Aligned_cols=356 Identities=16% Similarity=0.113 Sum_probs=237.8
Q ss_pred cHHHHHHHHHhcCCCccccceeeeeceeeeccCCCCCCCHHHHHHHHHHHhhc-cCCCCCccchhHHHHHHHHHHHHHHH
Q psy15216 1368 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDATTPIDPRVVDKMIPYLRVQ-FGNPASRNHIYGWTAEKAIEKARNEV 1446 (2602)
Q Consensus 1368 ~~~~v~~aL~~~g~~~~~~ei~~iP~~~v~L~~~~~~~~~~v~eal~~~l~~~-~~np~~~~~~~~~~~~~~~~~lr~~i 1446 (2602)
.+....++|+++|+++....++. |. +.+. +...+..+.+++.+.+... ..|.+ .....++|+++
T Consensus 23 ~~~~~~~~l~~~g~~~~~L~~g~-p~--~D~~--tds~t~a~~~a~~~a~~~g~~~Y~~----------~~g~~~Lreai 87 (460)
T PRK13238 23 TREERERALAEAGYNPFLLKSED-VF--IDLL--TDSGTGAMSDRQWAAMMRGDEAYAG----------SRSYYRLEDAV 87 (460)
T ss_pred CHHHHHHHHHHcCCCEEeCCCCC-CC--CCCC--CCCCchhhhHHHHHHHHhCCcccCC----------CCCHHHHHHHH
Confidence 35666678889999998887763 41 1111 1111124556666665431 11211 12367899999
Q ss_pred HHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCC----------
Q psy15216 1447 AQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN---------- 1516 (2602)
Q Consensus 1447 a~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~---------- 1516 (2602)
+++++.+ ++++|+|+|+|+++++++++ +||| |+++++.|+++...+..+ |++++.+++++
T Consensus 88 a~~~~~~--~vv~t~ggt~A~~~~~~all----~pGD-Vii~~p~~~~~~~~i~~~---G~~~v~v~~~~~~~~~~~~~f 157 (460)
T PRK13238 88 KDIFGYP--YTIPTHQGRAAEQILFPVLI----KKGD-VVPSNYHFDTTRAHIELN---GATAVDLVIDEALDTGSRHPF 157 (460)
T ss_pred HHHhCCC--cEEECCCHHHHHHHHHHHhC----CCCC-EEccCCcccchHHHHHHc---CCEEEEEeccccccccccccc
Confidence 9999964 79999999999999999887 8999 999999999988777665 99999998853
Q ss_pred CCCcChhHHHhhccC----CceEEEEeccccccc-cccC---hHHHHHHhhhcCCEEEEecccccC-----------ccc
Q psy15216 1517 NGLITLSQLEEKICS----DTILVSVMLVNNEIG-VIQP---ILEIGELCRSKGVIFHCDAAQAVG-----------KID 1577 (2602)
Q Consensus 1517 ~~~id~d~l~~~i~~----~t~lv~l~~~~n~tG-~~~~---l~~I~~ia~~~gi~vivD~a~~~g-----------~~~ 1577 (2602)
.+.+|+++|+++|++ +|++|++++|+|||| .+++ +++|.++|++||+++|+|++|..+ ...
T Consensus 158 ~g~id~e~Le~~i~~~~~~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~~e~a~f~~~~e~g~~~ 237 (460)
T PRK13238 158 KGNFDLEKLEALIEEVGAENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARFAENAYFIKQREPGYKD 237 (460)
T ss_pred cCCcCHHHHHHHHhhcCCCceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcchhhhhhhhhhccccccC
Confidence 244999999999984 799999999999998 7777 578999999999999999998653 112
Q ss_pred ccCCC------CCccEEEEcccc-ccCCCceEEEEEec-CCCCccccccccCCccccCCCCCcchhHHHHHHHHHHHHHH
Q psy15216 1578 INIQN------YKVDLMSFSAHK-IYGPKGIGALYIRR-NPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARI 1649 (2602)
Q Consensus 1578 ~~l~~------~~~D~~v~S~~K-~~gp~G~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~ 1649 (2602)
.++.+ ...|++++|++| .++|.| |+++.++ ++.++++.....+. .....+..+...+.|+..+|.....
T Consensus 238 ~si~~i~~~~~s~~D~~~~Sg~K~g~~~~G-G~i~~~d~~l~~~~~~~~~~~~--g~~t~~g~~~~~~~Ala~~l~e~~~ 314 (460)
T PRK13238 238 KSIKEIAREMFSYADGLTMSAKKDAMVNIG-GLLCFRDEDLFTECRTLCILYE--GFPTYGGLAGRDMEALAVGLYEGMD 314 (460)
T ss_pred CCHHHHhhhhcccCcEEEEecccCCCCcce-eEEEcChHHHHHHhhhcccccC--CcccccCcHHHHHHHHHhhHHHhhC
Confidence 22211 237999999999 677876 8888884 55555554321110 1123455666667777777762111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecC---------CcHHHHHhc---CCEEEcccccc
Q psy15216 1650 EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI---------EGESLLMAI---KDIAVSSGSAC 1717 (2602)
Q Consensus 1650 ~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~---------~~~~~~~~L---~gI~v~~g~~~ 1717 (2602)
+...+...+.+++|.+.|.+ .|+.+..|... +...+.+... ....++.+| .||.+.++..|
T Consensus 315 --~~~~~~~~~~~~~l~~~L~~--~G~~~~~p~Gg---~~v~~d~~~~~~~~~~~~~~~~~~a~~L~~e~GV~~~~~~~f 387 (460)
T PRK13238 315 --EDYLAYRIGQVEYLGEGLEE--AGVPIQTPAGG---HAVFVDAGKFLPHIPAEQFPAQALACELYLEAGIRGVEIGSL 387 (460)
T ss_pred --hHHHHHHHHHHHHHHHHHHH--CCCCeEccCCc---eEEEEEchhcCCCCCCCCCchHHHHHHHHHHcCeeeecccce
Confidence 12233334457889999987 47877754332 2222222111 235566666 79999888877
Q ss_pred CCCCCChhHHHHHcCCCccccCCeEEEecCC-CCCHHHHHHHHHHHHH
Q psy15216 1718 TSASLEPSYVLRALGCNDELAHSSIRFTIGR-FTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1718 ~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~-~~t~edid~li~~L~~ 1764 (2602)
..+.. ...+.........+||++.- --|.+++++++++|++
T Consensus 388 ~~~~~------~~~~~~~~~~~~~~Rla~~rr~~~~~~~~~~~~~l~~ 429 (460)
T PRK13238 388 LLGRD------PKTGEQLPAPAELLRLAIPRRVYTQSHMDYVAEALKA 429 (460)
T ss_pred ecccC------CCCccccCCccceEEEecccccCCHHHHHHHHHHHHH
Confidence 54310 01111001113789999874 2388999999999997
|
|
| >PRK06425 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.9e-20 Score=233.54 Aligned_cols=276 Identities=16% Similarity=0.127 Sum_probs=197.4
Q ss_pred HHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCC
Q psy15216 42 AIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN 121 (2602)
Q Consensus 42 ~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~ 121 (2602)
...++|+++|+++|.++++|++|+|+++++.+++. +. ++|+ |++++|.|+.+...++.. |++++.++.+.
T Consensus 41 ~~~~lr~~ia~~~~~~~~~I~it~Gs~~~l~~~~~-~~----~~~~-vv~~~P~y~~y~~~~~~~---G~~v~~vp~~~- 110 (332)
T PRK06425 41 SYTDIEDQIKIYTQGLKIKVLIGPGLTHFIYRLLS-YI----NVGN-IIIVEPNFNEYKGYAFTH---GIRISALPFNL- 110 (332)
T ss_pred CHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHH-Hh----CCCc-EEEeCCChHHHHHHHHHc---CCeEEEEeCCc-
Confidence 46889999999999999999999999999999986 34 4665 666688888887777666 99999999865
Q ss_pred CccChHHHHhhccCCceEEEEecccCcccccccH---HHHHHHHHhcCCEEEEecccccccc----c-ccC-CCCCccEE
Q psy15216 122 GLITLSQLEEKICSDTILVSVMLVNNEIGVIQPI---LEIGELCRSKGVIFHCDAAQAVGKI----D-INI-QNYKVDLM 192 (2602)
Q Consensus 122 ~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l---~~I~~la~~~g~~livD~a~a~g~~----~-~dl-~~~~~D~~ 192 (2602)
..+|.+.+++ .+++++++++||||||.+++. ++|+++|+++++++|+|+++..-.. + ..+ ...+.-++
T Consensus 111 ~~~~~~~l~~---~~~k~v~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~DE~Y~~~~~~~~~~~~~~~~~~~~vi~ 187 (332)
T PRK06425 111 INNNPEILNN---YNFDLIFIVSPDNPLGNLISRDSLLTISEICRKKGALLFIDEAFIDFVPNRAEEDVLLNRSYGNVII 187 (332)
T ss_pred ccCcHHHHhh---cCCCEEEEeCCCCCcCCccCHHHHHHHHHHHHHcCCEEEEecchhccccccchhHHHHhccCCCEEE
Confidence 3456665543 488999999999999999995 4566778899999999999753211 1 111 12233577
Q ss_pred EeccccccCCCC--cEEEEEecCCCCcccceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy15216 193 SFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLY 270 (2602)
Q Consensus 193 ~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~ 270 (2602)
+.||+|.+|++| +||+++++++++.+..... .++.+.....++. ... .....++.++.+++.++++.
T Consensus 188 ~~SfSK~~~l~GlRiGy~v~~~~li~~l~~~~~---------~~~~~~~~~~~l~-~~~-~~~~~~~~~~~~~~~r~~l~ 256 (332)
T PRK06425 188 GRSLTKILGIPSLRIGYIATDDYNMKISRKITE---------PWSVCDPAIDFIR-SID-LDYVAKHSLDIMENERSYLI 256 (332)
T ss_pred EeecHHhcCCchhhheeeecCHHHHHHHHHcCC---------CCccCHHHHHHHH-Hhh-hHHHHHHHHHHHHHHHHHHH
Confidence 889999999999 8999999887776654321 1122222211111 111 12334677888888999999
Q ss_pred HHHhhccCceEEeCCCCCCCCceEEEEEcccChhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEE
Q psy15216 271 NGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRF 348 (2602)
Q Consensus 271 ~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi 348 (2602)
+.|.+ . ++....++. ...+.+.++ +..++.+.| +||.++++..|... .++++||
T Consensus 257 ~~L~~-~-g~~~~~~~~---g~f~~~~~~--~~~~~~~~l~~~gi~v~~~~~f~~~-----------------~~~~iRi 312 (332)
T PRK06425 257 NNLEA-M-GFRAAGDPS---ANFITFMIP--DAHDFYSYLLKNGILVRLLDDYECL-----------------GEQYIRI 312 (332)
T ss_pred HHHHH-C-CCEECCCCC---ceEEEEEcC--CHHHHHHHHHHCCeEEEECCCCCCC-----------------CCCEEEE
Confidence 99987 3 666653322 122333333 566677666 89999998776321 1379999
Q ss_pred ecCCCCCHHHHHHHHHHHHh
Q psy15216 349 TIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 349 s~~~~~t~edid~li~~L~~ 368 (2602)
+++ +.+++++++++|++
T Consensus 313 s~~---~~~~~~~l~~al~~ 329 (332)
T PRK06425 313 AIR---RRSFNIKLVNALRN 329 (332)
T ss_pred EeC---CHHHHHHHHHHHHH
Confidence 999 88999999999985
|
|
| >PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.8e-20 Score=236.89 Aligned_cols=333 Identities=18% Similarity=0.150 Sum_probs=230.0
Q ss_pred CCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCE
Q psy15216 1405 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKH 1484 (2602)
Q Consensus 1405 ~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~ 1484 (2602)
..+...+++.+.+...+.+++ ....++++++++++|++ ++++++|+|+|+++++.++. +++||+
T Consensus 12 ~~~~e~~~~~~~l~~~~~~~g-----------~~~~~le~~la~~~g~~--~~v~~~sgt~al~lal~al~---~~~Gd~ 75 (379)
T PRK11658 12 MGDEELAAVKEVLRSGWITTG-----------PKNQALEQAFCQLTGNQ--HAIAVSSATAGMHITLMALG---IGPGDE 75 (379)
T ss_pred CCHHHHHHHHHHHHcCCccCC-----------HhHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHHHcC---CCCCCE
Confidence 345667788887765332221 24688999999999975 68889999999999999983 389999
Q ss_pred EEEcCCCCcchHHHHHHHHhCCcEEEEeccCCC-CCcChhHHHhhccCCceEEEEeccccccccccChHHHHHHhhhcCC
Q psy15216 1485 IITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN-GLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGV 1563 (2602)
Q Consensus 1485 Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~-~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~~ia~~~gi 1563 (2602)
|++++++|+++..++..+ |++++.++++++ +.+|+++++++++++|++|+.+| ++|...|+++|.++|++||+
T Consensus 76 Viv~~~~~~~~~~~~~~~---G~~~v~vd~~~~~~~~d~~~l~~~i~~~tkav~~~~---~~G~~~d~~~i~~~a~~~gi 149 (379)
T PRK11658 76 VITPSLTWVSTLNMIVLL---GATPVMVDVDRDTLMVTPEAIEAAITPRTKAIIPVH---YAGAPADLDAIRAIGERYGI 149 (379)
T ss_pred EEECCCcHHHHHHHHHHc---CCEEEEEecCCCcCCcCHHHHHHhcccCCeEEEEeC---CCCCcCCHHHHHHHHHHcCC
Confidence 999999999987766554 999999999864 46899999999999999988555 59999999999999999999
Q ss_pred EEEEecccccCcccc--cCCCCCccEEEEcccc-ccCCCceEEEEEe-cCCCCccccccccCCccc--------------
Q psy15216 1564 IFHCDAAQAVGKIDI--NIQNYKVDLMSFSAHK-IYGPKGIGALYIR-RNPRTRIEAQIHGGGHEY-------------- 1625 (2602)
Q Consensus 1564 ~vivD~a~~~g~~~~--~l~~~~~D~~v~S~~K-~~gp~G~G~l~~~-~~~~~~l~~~~~g~~~~~-------------- 1625 (2602)
++|+|++|+.|.... .+...+.++++++.+| +.++.| |+++.+ +++.+++++....|....
T Consensus 150 ~vi~D~a~a~g~~~~~~~~g~~g~~~~Sf~~~K~l~~g~G-G~v~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~ 228 (379)
T PRK11658 150 PVIEDAAHAVGTYYKGRHIGARGTAIFSFHAIKNITCAEG-GLVVTDDDELADRLRSLKFHGLGVDAFDRQTQGRAPQAE 228 (379)
T ss_pred eEEEECCCccCCeECCeecCCCCCEEEeCCCCCcCcccCc-eEEEECCHHHHHHHHHHHHcCCCcchhhhhcccCCCcce
Confidence 999999999887543 2445566666777778 445554 666664 455555554332221110
Q ss_pred cCCCCCcchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCC--CCCceEEEEEec----CC
Q psy15216 1626 GLRSGTLATHQIVGMGEAFRLAR-IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNN--RIPHNLNISFNF----IE 1698 (2602)
Q Consensus 1626 ~~~~gt~~~~~~~al~~aL~~~~-~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~--~~~~~~~~~~~~----~~ 1698 (2602)
.+..|+. ..+..+.+|+.+.+ ..+++..++.+++.+++.+.|.+ ++...+..+... ..+....+.++. .+
T Consensus 229 ~~~~G~n--~~~~~l~AAl~~~ql~~l~~~~~~r~~~a~~~~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (379)
T PRK11658 229 VLTPGYK--YNLADINAAIALVQLAKLEALNARRREIAARYLQALAD-LPFQPLSLPAWPHQHAWHLFIIRVDEERCGIS 305 (379)
T ss_pred eeccccc--cCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCccCcCCCCCCceeEEEEEEEECCccccCC
Confidence 0112221 12345666666333 56889999999999999999976 554333222211 122333344432 34
Q ss_pred cHHHHHhc--CCEEEccccccCCCCCChhHHHH----HcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1699 GESLLMAI--KDIAVSSGSACTSASLEPSYVLR----ALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1699 ~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~----~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
.+++...| +||.++ .+|.+.+.++.+... .++..+......|.|++++..|.+|+++++++|++.
T Consensus 306 r~~~~~~L~~~gI~~~--~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lP~~~~l~~~~~~~i~~~i~~~ 376 (379)
T PRK11658 306 RDALMEALKERGIGTG--LHFRAAHTQKYYRERFPTLSLPNTEWNSERICSLPLFPDMTDADVDRVITALQQI 376 (379)
T ss_pred HHHHHHHHHHCCCCCc--ccCcCcccChhhhccCCCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHH
Confidence 66777777 677643 445444444433210 122333344578999999999999999999999973
|
|
| >PRK07179 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.7e-20 Score=238.67 Aligned_cols=312 Identities=15% Similarity=0.213 Sum_probs=224.5
Q ss_pred CCHHHHHHHHHHHhhccCCCCC-ccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCC
Q psy15216 1405 IDPRVVDKMIPYLRVQFGNPAS-RNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK 1483 (2602)
Q Consensus 1405 ~~~~v~eal~~~l~~~~~np~~-~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd 1483 (2602)
..+++++++.+.++..+.+++. +.+..+ .....++++++++++|.+ .+++++|+++|+..++.++. .+||
T Consensus 69 ~~p~v~~a~~~~~~~~~~~~~~s~~~~~~---~~~~~~le~~la~~~g~~--~~~~~~sG~~An~~~l~~l~----~~g~ 139 (407)
T PRK07179 69 GHPDIIKAQIAALQEEGDSLVMSAVFLHD---DSPKPQFEKKLAAFTGFE--SCLLCQSGWAANVGLLQTIA----DPNT 139 (407)
T ss_pred CCHHHHHHHHHHHHHhCCCCCccccccCC---chHHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHhC----CCCC
Confidence 4678999999999876555532 222221 135678889999999974 57889999999999999987 7899
Q ss_pred EEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccC-CceEEEEeccccccccccChHHHHHHhhhcC
Q psy15216 1484 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS-DTILVSVMLVNNEIGVIQPILEIGELCRSKG 1562 (2602)
Q Consensus 1484 ~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~-~t~lv~l~~~~n~tG~~~~l~~I~~ia~~~g 1562 (2602)
.|+++.++|+++...+... |+++..++ ..|++++++++++ ++++|++++++||||.+.|+++|.++|++||
T Consensus 140 ~v~~~~~~h~s~~~~~~~~---g~~~~~~~-----~~d~~~l~~~l~~~~~~lV~v~~v~n~tG~i~pl~~I~~l~~~~~ 211 (407)
T PRK07179 140 PVYIDFFAHMSLWEGVRAA---GAQAHPFR-----HNDVDHLRRQIERHGPGIIVVDSVYSTTGTIAPLADIVDIAEEFG 211 (407)
T ss_pred EEEEECCcCHHHHHHHHHC---CCeEEEec-----CCCHHHHHHHHHhcCCeEEEECCCCCCCCccccHHHHHHHHHHcC
Confidence 9999999999986655443 77766553 2589999999986 5889999999999999999999999999999
Q ss_pred CEEEEecccccCccc---------ccCCCCCccEEEEccccccCCCceEEEEEecCCCCccccccccCCccccCCCCCcc
Q psy15216 1563 VIFHCDAAQAVGKID---------INIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLA 1633 (2602)
Q Consensus 1563 i~vivD~a~~~g~~~---------~~l~~~~~D~~v~S~~K~~gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~ 1633 (2602)
+++|+|++|+.|... +++. .++|++++|+||.+|++ +|++++++++++.+..... .....+|.+
T Consensus 212 ~~livDea~~~g~~g~~g~g~~~~~~~~-~~vdi~~~S~sK~~g~~-~G~l~~~~~~~~~~~~~~~-----~~~~~~t~~ 284 (407)
T PRK07179 212 CVLVVDESHSLGTHGPQGAGLVAELGLT-SRVHFITASLAKAFAGR-AGIITCPRELAEYVPFVSY-----PAIFSSTLL 284 (407)
T ss_pred CEEEEECcccccCcCCCCCchHHhcCCC-CCCCEEEeechHhhhcc-CeEEEeCHHHHHHHHHhCc-----CeeeCCCCC
Confidence 999999999876431 1221 24689999999987876 6999998766554432110 112345667
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecC-CcHHHHHhc--CCEE
Q psy15216 1634 THQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI-EGESLLMAI--KDIA 1710 (2602)
Q Consensus 1634 ~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~L--~gI~ 1710 (2602)
...++++.++++.... .+..++++.++++++++.|.+ + ++.+.+. ..+..+.++.. +...+...| +||.
T Consensus 285 ~~~~aa~~aal~~~~~-~~~~~~~l~~~~~~l~~~L~~-~-g~~v~~~-----~~i~~l~~~~~~~~~~~~~~L~~~GI~ 356 (407)
T PRK07179 285 PHEIAGLEATLEVIES-ADDRRARLHANARFLREGLSE-L-GYNIRSE-----SQIIALETGSERNTEVLRDALEERNVF 356 (407)
T ss_pred HHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHH-c-CCCCCCC-----CCEEEEEeCCHHHHHHHHHHHHHCCce
Confidence 7777777777775533 356778899999999999987 3 5544421 22333333321 234455555 7887
Q ss_pred EccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1711 VSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1711 v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
++ ..|.+. .....+.+||+++.++|.+|+++++++|++
T Consensus 357 ~~--~~~~p~--------------~~~~~~~lRis~~~~~t~edi~~~~~~l~~ 394 (407)
T PRK07179 357 GA--VFCAPA--------------TPKNRNLIRLSLNADLTASDLDRVLEVCRE 394 (407)
T ss_pred Ee--eecCCC--------------CCCCCceEEEEECCCCCHHHHHHHHHHHHH
Confidence 43 222221 001137899999999999999999999987
|
|
| >PRK05937 8-amino-7-oxononanoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.4e-20 Score=237.36 Aligned_cols=306 Identities=17% Similarity=0.182 Sum_probs=207.5
Q ss_pred HHHHHHHHHHHhhcc-CCCCCccchhHHH----HHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccC
Q psy15216 1407 PRVVDKMIPYLRVQF-GNPASRNHIYGWT----AEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKR 1481 (2602)
Q Consensus 1407 ~~v~eal~~~l~~~~-~np~~~~~~~~~~----~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~ 1481 (2602)
+.+.+++.+.+.... ..|+++.|..+.. ....++++|+.+++++|++ +.+++++| +.++..++..+. ++
T Consensus 21 ~~~~~~~~~~~~~~~~~~p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~~~~-~~l~~~sG-~~a~~~~~~~~~----~~ 94 (370)
T PRK05937 21 DTLVHEVEKRYRLYCRQFPHAQLGYGGSRAILGPSSLLDDLEHKIAHFHGAP-EAFIVPSG-YMANLGLCAHLS----SV 94 (370)
T ss_pred HHHHHHHHHHHHHhccccCCCCCCCCCcCcccCChHHHHHHHHHHHHHhCCC-eEEEECCh-HHHHHHHHHHhC----CC
Confidence 345555555554421 1143323333333 6678999999999999985 33555555 556554444443 68
Q ss_pred CCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhcc------CCceEEEEeccccccccccChHHHH
Q psy15216 1482 GKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKIC------SDTILVSVMLVNNEIGVIQPILEIG 1555 (2602)
Q Consensus 1482 gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~------~~t~lv~l~~~~n~tG~~~~l~~I~ 1555 (2602)
||.|++...+|+++...+.... +..+. + ...|++++++++. +++.+|++++++|++|.+.|+++|.
T Consensus 95 ~d~ii~d~~~H~sv~~~~~~~~--~~~~~-~-----~~~d~~~l~~~l~~~~~~~~~~~~v~v~~v~s~~G~i~pl~eI~ 166 (370)
T PRK05937 95 TDYVLWDEQVHISVVYSLSVIS--GWHQS-F-----RHNDLDHLESLLESCRQRSFGRIFIFVCSVYSFKGTLAPLEQII 166 (370)
T ss_pred CCEEEEEhhhhHHHHHHHHHcC--CceEE-e-----cCCCHHHHHHHHHhhhccCCCcEEEEEecCCCCCCCccCHHHHH
Confidence 8999999999999988877642 33333 2 2368999999886 3466888999999999999999999
Q ss_pred HHhhhcCCEEEEecccccCcccccCC----CCC---ccEEEEccccccCCCceEEEEEecCCCCccccccccCCccccCC
Q psy15216 1556 ELCRSKGVIFHCDAAQAVGKIDINIQ----NYK---VDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLR 1628 (2602)
Q Consensus 1556 ~ia~~~gi~vivD~a~~~g~~~~~l~----~~~---~D~~v~S~~K~~gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~ 1628 (2602)
++|+++|+++++|++|++|..+.+.. .++ .++++.|++|.+||.|.|+++.+ +....+.... .+..+.
T Consensus 167 ~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~~~~~tlsK~~g~~G~~vl~~~-~~~~~~~~~~----~~~~~s 241 (370)
T PRK05937 167 ALSKKYHAHLIVDEAHAMGIFGDDGKGFCHSLGYENFYAVLVTYSKALGSMGAALLSSS-EVKQDLMLNS----PPLRYS 241 (370)
T ss_pred HHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCcEEEEechhhhhcCceEEEcCH-HHHHHHHHhC----CCCeec
Confidence 99999999999999999987766542 233 23567899999999998877654 3222221100 011222
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecCCcHHHHHhc--
Q psy15216 1629 SGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI-- 1706 (2602)
Q Consensus 1629 ~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~L-- 1706 (2602)
++.+.+.++++.++++++....+..+++..++++++.+.|....++ ....+.++......+...|
T Consensus 242 -~~~~~~~~~a~~aal~~l~~~~~~~~~~l~~l~~~l~~~l~~~~~~------------~~~~i~~~~~~~~~~~~~L~~ 308 (370)
T PRK05937 242 -TGLPPHLLISIQVAYDFLSQEGELARKQLFRLKEYFAQKFSSAAPG------------CVQPIFLPGISEQELYSKLVE 308 (370)
T ss_pred -CCCCHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCCCCC------------CEEEEEeCChhHHHHHHHHHH
Confidence 3456667888889998765444556778888888888777541111 0122445544455666666
Q ss_pred CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1707 KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1707 ~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
+||.++ ..|.+. .++||+|++.++|.+||++++++|++
T Consensus 309 ~gi~v~--~~~~~~------------------~~~iRis~~~~~t~edid~l~~~L~~ 346 (370)
T PRK05937 309 TGIRVG--VVCFPT------------------GPFLRVNLHAFNTEDEVDILVSVLAT 346 (370)
T ss_pred CCeeEE--eeCCCC------------------CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 788775 233221 26899999999999999999999987
|
|
| >PRK07550 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.5e-19 Score=233.47 Aligned_cols=314 Identities=14% Similarity=0.094 Sum_probs=220.8
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHh----C--CCCCcEEEeCCHHHHHHHHHHhhhhh
Q psy15216 1404 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI----Y--ADPREIIWTSGATESNNLAIKGAAHF 1477 (2602)
Q Consensus 1404 ~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~----g--~~~~~iv~t~gaT~al~~al~~l~~~ 1477 (2602)
+.+..+.+++.+.+... ....|... ....++|+++++++ | .++++|++|+|+++|+..++.++.
T Consensus 42 ~~~~~~~~~~~~~~~~~----~~~~Y~~~----~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~-- 111 (386)
T PRK07550 42 PPPPELLRALAEAAADP----AAHLYGPV----EGLPELREAYAAHYSRLYGAAISPEQVHITSGCNQAFWAAMVTLA-- 111 (386)
T ss_pred CCCHHHHHHHHHHHhCc----CCcCCCCC----CCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHhc--
Confidence 44667777777765321 10011110 12355666666655 4 467899999999999999999987
Q ss_pred hccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCC--CCCcChhHHHhhccCCceEEEEeccccccccccC---hH
Q psy15216 1478 YKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---IL 1552 (2602)
Q Consensus 1478 ~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~---l~ 1552 (2602)
++||+|++++|.|+.+...++. .|++++.++.++ ++.+|+++++++++++++++++++|+||||.++| ++
T Consensus 112 --~~gd~Vlv~~p~y~~~~~~~~~---~g~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~P~NPtG~~~~~~~~~ 186 (386)
T PRK07550 112 --GAGDEVILPLPWYFNHKMWLDM---LGIRPVYLPCDEGPGLLPDPAAAEALITPRTRAIALVTPNNPTGVVYPPELLH 186 (386)
T ss_pred --CCCCEEEEcCCCCcchHHHHHh---cCCEEEEEecCCCcCCCCCHHHHHHHhcccCcEEEEeCCCCCCCcccCHHHHH
Confidence 7999999999999988766554 499999999874 4558999999999999999999999999999998 77
Q ss_pred HHHHHhhhcCCEEEEecccccCc----ccccC---CCCC-ccEEEEccccccCCCc--eEEEEEecCCCCccccccccCC
Q psy15216 1553 EIGELCRSKGVIFHCDAAQAVGK----IDINI---QNYK-VDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGG 1622 (2602)
Q Consensus 1553 ~I~~ia~~~gi~vivD~a~~~g~----~~~~l---~~~~-~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~~g~~ 1622 (2602)
+|.++|++||+++|+|++++... .+..+ ...+ ..+++.|++|.+|++| +||++.+++.++.+.....
T Consensus 187 ~i~~~~~~~~~~iI~Dd~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~--- 263 (386)
T PRK07550 187 ELYDLARRHGIALILDETYRDFDSGGGAPHDLFADPDWDDTLVHLYSFSKSYALTGHRVGAVVASPARIAEIEKFMD--- 263 (386)
T ss_pred HHHHHHHHcCeEEEEeccchhhccCCCCCcchhhCCCccccEEEEecchhhccCcccceEeeecCHHHHHHHHHHHh---
Confidence 89999999999999999975321 11111 1112 2466889999877666 8999998776665544321
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEE--e--cCC
Q psy15216 1623 HEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISF--N--FIE 1698 (2602)
Q Consensus 1623 ~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~--~--~~~ 1698 (2602)
....+++...+.++..++.......++.++++.+.++++.+.|.. .+++.+. + . ...++++ + ..+
T Consensus 264 ----~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~-~-~----g~~~~~~~~~~~~~~ 332 (386)
T PRK07550 264 ----TVAICAPRIGQIAVAWGLPNLADWRAGNRAEIARRRDAFRAVFAR-LPGWELL-A-S----GAYFAYVRHPFPDRP 332 (386)
T ss_pred ----hcccCCCcHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHh-CCCceeC-C-C----ceEEEEecCCCCCCC
Confidence 112234555555666666644455667777888888999999977 4555443 1 1 1222333 3 234
Q ss_pred cHHHHHhc---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1699 GESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1699 ~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
..++...| +||.+.+|..|... ..+++||+++. .+.++++++++.|++
T Consensus 333 ~~~l~~~l~~~~gv~v~pg~~f~~~-----------------~~~~iRis~~~-~~~~~~~~~~~~l~~ 383 (386)
T PRK07550 333 SREVARRLAKEAGILCLPGTMFGPG-----------------QEGYLRLAFAN-ADVAGIGELVERLRA 383 (386)
T ss_pred HHHHHHHHHHhcCEEEeCchhhCCC-----------------CCCEEEEEeec-CCHHHHHHHHHHHHh
Confidence 56776654 69999999877431 12789999974 468999999999986
|
|
| >PRK00011 glyA serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-19 Score=238.65 Aligned_cols=336 Identities=18% Similarity=0.215 Sum_probs=226.9
Q ss_pred eeccCCCCCCCHHHHHHHHHHHhhcc--CCCCCccchhHHHHHHHHHH-HHHHHHHHhCCCCCcEEEeCCHHHHHHHHHH
Q psy15216 1396 IVFKDATTPIDPRVVDKMIPYLRVQF--GNPASRNHIYGWTAEKAIEK-ARNEVAQLIYADPREIIWTSGATESNNLAIK 1472 (2602)
Q Consensus 1396 v~L~~~~~~~~~~v~eal~~~l~~~~--~np~~~~~~~~~~~~~~~~~-lr~~ia~~~g~~~~~iv~t~gaT~al~~al~ 1472 (2602)
+.|..+..+.++.+++++...+...+ +++++ .+..+......+++ +|+.+++++|+++.+|+++ ++|+|+..++.
T Consensus 28 ~~l~~~~n~~~~~v~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~~~~~~la~~~g~~~~~i~~~-sgt~al~~~l~ 105 (416)
T PRK00011 28 IELIASENFVSPAVMEAQGSVLTNKYAEGYPGK-RYYGGCEYVDVVEQLAIDRAKELFGAEYANVQPH-SGSQANAAVYF 105 (416)
T ss_pred eeeecccCcCCHHHHHHHhchhhcccccCCCCc-cccccchHHHHHHHHHHHHHHHHhCCCceeeecC-CchHHHHHHHH
Confidence 33444445678899999988765433 44543 23223333444444 6889999999987666655 46889999988
Q ss_pred hhhhhhccCCCEEEEcCCCCcchHHHHHH--HHhCCcEEEEeccCC-CCCcChhHHHhhccC-CceEEEEeccccccccc
Q psy15216 1473 GAAHFYKKRGKHIITVQTEHKSVLDSIRK--LENDGFRVTYLKPKN-NGLITLSQLEEKICS-DTILVSVMLVNNEIGVI 1548 (2602)
Q Consensus 1473 ~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~--~~~~G~~v~~v~~~~-~~~id~d~l~~~i~~-~t~lv~l~~~~n~tG~~ 1548 (2602)
++. ++||+|+++.++|+++...+.. +...|++++.++.++ ++.+|++++++++++ +|++|+++++ .+|..
T Consensus 106 ~l~----~~gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~k~v~~~~~--~~~~~ 179 (416)
T PRK00011 106 ALL----KPGDTILGMDLAHGGHLTHGSPVNFSGKLYNVVSYGVDEETGLIDYDEVEKLALEHKPKLIIAGAS--AYSRP 179 (416)
T ss_pred Hhc----CCCCEEEEeccccCCccccccccccccceeeEeecCcCcccCCcCHHHHHHHHHhcCCCEEEECCC--cCCCc
Confidence 886 8999999999999876433321 223477888888874 578999999999975 7999988754 35677
Q ss_pred cChHHHHHHhhhcCCEEEEecccccCcc-----cccCCCCCccEEEEcccc-ccCCCceEEEEEe-cCCCCccccccccC
Q psy15216 1549 QPILEIGELCRSKGVIFHCDAAQAVGKI-----DINIQNYKVDLMSFSAHK-IYGPKGIGALYIR-RNPRTRIEAQIHGG 1621 (2602)
Q Consensus 1549 ~~l~~I~~ia~~~gi~vivD~a~~~g~~-----~~~l~~~~~D~~v~S~~K-~~gp~G~G~l~~~-~~~~~~l~~~~~g~ 1621 (2602)
.|+++|.++|++||+++|+|++|+.|.. +.++. ++|++++|+|| +.||+| |+++.+ +++.+.+......
T Consensus 180 ~~~~~I~~la~~~~~~livD~a~~~g~~~~g~~~~~~~--~~di~~~S~~K~l~g~~g-g~i~~~~~~~~~~l~~~~~~- 255 (416)
T PRK00011 180 IDFKRFREIADEVGAYLMVDMAHIAGLVAAGVHPSPVP--HADVVTTTTHKTLRGPRG-GLILTNDEELAKKINSAVFP- 255 (416)
T ss_pred cCHHHHHHHHHHcCCEEEEECcchhcccccCccCCCCC--CCcEEEecCCcCCCCCCc-eEEEeCCHHHHHHHHHHhCc-
Confidence 8999999999999999999999987654 23333 67999999999 557886 788875 4565555433211
Q ss_pred CccccCCCCCcchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecC--C
Q psy15216 1622 GHEYGLRSGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI--E 1698 (2602)
Q Consensus 1622 ~~~~~~~~gt~~~~~~~al~~aL~-~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~--~ 1698 (2602)
...+++....+.++..++. ....++++..+++.++++++++.|.+ .|+.+.. .....+...+.++.. +
T Consensus 256 -----~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~--~g~~~~~--~~~~~~~~~i~~~~~~~~ 326 (416)
T PRK00011 256 -----GIQGGPLMHVIAAKAVAFKEALEPEFKEYAQQVVKNAKALAEALAE--RGFRVVS--GGTDNHLVLVDLRSKGLT 326 (416)
T ss_pred -----cccCCccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh--CCCeeee--cCCCCeEEEEeCcccCCC
Confidence 1123455556666655554 44455788899999999999999987 4776652 111123333333321 3
Q ss_pred cHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCC----CCCHHHHHHHHHHHHHh
Q psy15216 1699 GESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGR----FTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1699 ~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~----~~t~edid~li~~L~~~ 1765 (2602)
...+...| +||.++.+...... .+ ......+|++... ..|.+|+++++++|++.
T Consensus 327 ~~~~~~~L~~~GI~v~~~~~p~~~--~~-----------~~~~~~~Ri~~~~~~~~~~t~~di~~l~~~l~~~ 386 (416)
T PRK00011 327 GKEAEAALEEANITVNKNAVPFDP--RS-----------PFVTSGIRIGTPAITTRGFKEAEMKEIAELIADV 386 (416)
T ss_pred HHHHHHHHHHcCcEEccCcCCCCC--CC-----------CCCCCceEecCHHHhhcCcCHHHHHHHHHHHHHH
Confidence 45565555 79998744321110 00 0012568996533 35799999999999873
|
|
| >PRK08636 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.8e-20 Score=238.07 Aligned_cols=313 Identities=15% Similarity=0.111 Sum_probs=212.5
Q ss_pred CCHHHHHHHHHHHhh--hcCCCCCCCcchhhhHHHHHHHHHHHHHHHh----C--CCCC-cEEEeCCHHHHHHHHHHhcc
Q psy15216 9 IDPRVVDKMIPYLRV--QFGNPASRNHIYGWTAEKAIEKARNEVAQLI----Y--ADPR-EIIWTSGATESNNLAIKGAA 79 (2602)
Q Consensus 9 ~p~~v~~a~~~~l~~--~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~----g--~~~~-~Iv~t~g~T~al~~~~~~l~ 79 (2602)
.|+.+.+++.+.+.. ...|+. .....++|+.+|+++ | ++++ +|++|+|+++|+..++.++.
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~Y~~----------~~G~~~lR~~ia~~l~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~ 116 (403)
T PRK08636 47 TPQHIIDKLCESAQKPKTHGYSV----------SKGIYKLRLAICNWYKRKYNVDLDPETEVVATMGSKEGYVHLVQAIT 116 (403)
T ss_pred CCHHHHHHHHHHhcCCccCCCCC----------CCCCHHHHHHHHHHHHHHhCCCCCCCCeEEECCChHHHHHHHHHHhC
Confidence 466677777665532 112222 122344555555554 6 4666 79999999999999999998
Q ss_pred cccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccC--CCCccChHHH----Hhhcc---CCceEEEEecccCccc
Q psy15216 80 HFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK--NNGLITLSQL----EEKIC---SDTILVSVMLVNNEIG 150 (2602)
Q Consensus 80 ~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~--~~~~ld~e~l----~~~i~---~~tklv~i~~~~npTG 150 (2602)
++||.|++++|.|+.+...+... |++++.++.+ .++.+|++.+ +++++ ++++++++++||||||
T Consensus 117 ----~~gd~Vlv~~P~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~i~~~~P~NPTG 189 (403)
T PRK08636 117 ----NPGDVAIVPDPAYPIHSQAFILA---GGNVHKMPLEYNEDFELDEDQFFENLEKALRESSPKPKYVVVNFPHNPTT 189 (403)
T ss_pred ----CCCCEEEEcCCCCcchHHHHHhc---CCEEEEEeccccccCccChhhhhhHHHHHHhhccCCceEEEEeCCCCCCC
Confidence 89999999999999988777765 9999999874 3467887754 55553 5789999999999999
Q ss_pred ccccH---HHHHHHHHhcCCEEEEeccccccc----cccc---CCCC-CccEEEeccccccCCCC--cEEEEEecCCCCc
Q psy15216 151 VIQPI---LEIGELCRSKGVIFHCDAAQAVGK----IDIN---IQNY-KVDLMSFSAHKIYGPKG--IGALYIRRNPRTR 217 (2602)
Q Consensus 151 ~~~~l---~~I~~la~~~g~~livD~a~a~g~----~~~d---l~~~-~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~ 217 (2602)
.+++. ++|+++|++|++++|+|++++.-. .... +... +..+++.|++|.+|.+| +||++.++++++.
T Consensus 190 ~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~iv~~~~li~~ 269 (403)
T PRK08636 190 ATVEKSFYERLVALAKKERFYIISDIAYADITFDGYKTPSILEVEGAKDVAVESYTLSKSYNMAGWRVGFVVGNKKLVGA 269 (403)
T ss_pred ccCCHHHHHHHHHHHHHcCcEEEEeccchhhccCCCCCCChhcCCCccccEEEEEecccccCCccceeeeeeCCHHHHHH
Confidence 99995 567888999999999999986321 1111 2111 12355789999998888 8999998887776
Q ss_pred ccceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEE
Q psy15216 218 IEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNIS 297 (2602)
Q Consensus 218 l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~ 297 (2602)
+..... ....+++.+.+.+ +..+++....++++.++.+.++++.+.+.|.. . ++.+..+.. ....++.
T Consensus 270 ~~~~~~------~~~~~~~~~~q~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-~~~~~~p~~---g~~~~~~ 337 (403)
T PRK08636 270 LKKIKS------WLDYGMFTPIQVA-ATIALDGDQSCVEEIRETYRKRRDVLIESFAN-A-GWELQKPRA---SMFVWAK 337 (403)
T ss_pred HHHHHH------HhcccCChHHHHH-HHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH-C-CCcccCCCc---ceEEEEE
Confidence 654321 0012333333333 33444422345677788888888889999877 2 554433322 1233344
Q ss_pred Ecc----cChhHHHHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 298 FNF----IEGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 298 ~~~----~~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
++. .+..++...+ .||.+.+|..|... ..+++||+++ .++++++..++.|++.
T Consensus 338 l~~~~~~~~~~~l~~~ll~~~gV~v~pg~~f~~~-----------------~~~~iRi~~~--~~~~~l~~~~~rl~~~ 397 (403)
T PRK08636 338 IPEPARHLGSLEFSKQLLTEAKVAVSPGIGFGEY-----------------GDEYVRIALI--ENENRIRQAARNIKKF 397 (403)
T ss_pred CCCccCCCCHHHHHHHHHHhCCEEEecchhhCcC-----------------CCCeEEEEec--CCHHHHHHHHHHHHHH
Confidence 432 1245666553 69999998776431 1379999997 4788999988888753
|
|
| >PLN02721 threonine aldolase | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.4e-20 Score=236.49 Aligned_cols=285 Identities=16% Similarity=0.209 Sum_probs=197.8
Q ss_pred HHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhccccccc-CCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCC
Q psy15216 43 IEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKK-RGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN 121 (2602)
Q Consensus 43 ~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~-~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~ 121 (2602)
..++|+.+++++|.+ .+++++++|+++..++.++. + +||+|++++++|.+.......+...|++++.++.+++
T Consensus 42 ~~~l~~~la~~~~~~--~~~~~~~Gs~a~~~~l~~~~----~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~ 115 (353)
T PLN02721 42 ALRLEEEMAKIFGKE--AALFVPSGTMGNLISVLVHC----DVRGSEVILGDNSHIHLYENGGISTLGGVHPRTVKNNED 115 (353)
T ss_pred HHHHHHHHHHHhCCc--eeEEecCccHHHHHHHHHHc----cCCCCeEEEcCccceehhcccchhhhcCceeEecCCCcC
Confidence 688999999999975 36777777888777777765 5 8999999999997665422233445999999998888
Q ss_pred CccChHHHHhhcc-------CCceEEEEecc-cCccccccc---HHHHHHHHHhcCCEEEEecccccccc---cccCC--
Q psy15216 122 GLITLSQLEEKIC-------SDTILVSVMLV-NNEIGVIQP---ILEIGELCRSKGVIFHCDAAQAVGKI---DINIQ-- 185 (2602)
Q Consensus 122 ~~ld~e~l~~~i~-------~~tklv~i~~~-~npTG~~~~---l~~I~~la~~~g~~livD~a~a~g~~---~~dl~-- 185 (2602)
+.+|+++++++++ +++++|+++++ +||||..+| +++|.++|++||+++++|++|.++.. ..+..
T Consensus 116 ~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~~~~np~G~~~~~~~l~~l~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~ 195 (353)
T PLN02721 116 GTMDLDAIEAAIRPKGDDHFPTTRLICLENTHANCGGRCLSVEYTDKVGELAKRHGLKLHIDGARIFNASVALGVPVHRL 195 (353)
T ss_pred CCcCHHHHHHHHHhccCCCCCcceEEEEeccccccCCccccHHHHHHHHHHHHHcCCEEEEEchhhhcchhhhCCCHHHH
Confidence 8899999999997 68999999885 678999888 67999999999999999999876531 11111
Q ss_pred CCCccEEEeccccccCCCCcEEEEEecCCCCcccceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy15216 186 NYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFL 265 (2602)
Q Consensus 186 ~~~~D~~~~S~~K~~Gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l 265 (2602)
..++|+++.|+||+++++..++++.++++++.+.+.... ..+++...+..++ +++.......+. .++..++
T Consensus 196 ~~~~d~~~~s~sK~l~~~~G~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~-~~~~~l~~~~~~-~~~~~~~ 266 (353)
T PLN02721 196 VKAADSVSVCLSKGLGAPVGSVIVGSKSFIRKAKRLRKT-------LGGGMRQVGVLAA-AALVALQENVPK-LEDDHKK 266 (353)
T ss_pred hhhCCEEEEecccccCCceeeEEecCHHHHHhHHHHHHh-------cCCCeehhHHHHH-HHHHHHHHHHHH-HHHHHHH
Confidence 225788899999977654324567777766665443211 1112222222211 122211222222 3344567
Q ss_pred HHHHHHHHhhccCceEE-eCCCCCCCCceEEEEEcc---cChhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCc
Q psy15216 266 QKRLYNGLMESIEEIYI-NGDMNNRIPHNLNISFNF---IEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCND 339 (2602)
Q Consensus 266 ~~~l~~~L~~~~~g~~l-~~~~~~~~~~~~~~~~~~---~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~ 339 (2602)
++++.+.|.+ ++++.+ ..++. .+++.+.++. .+...+.+.| +||.++++.
T Consensus 267 ~~~l~~~L~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~L~~~gi~v~~~~-------------------- 322 (353)
T PLN02721 267 AKLLAEGLNQ-IKGLRVNVAAVE---TNIVYFDITDGSRITAEKLCKSLEEHGVLLMPGN-------------------- 322 (353)
T ss_pred HHHHHHHHHh-CCCcEEecCCcc---ceEEEEEccCCccccHHHHHHHHHhCCcEEecCC--------------------
Confidence 7899999977 667754 33322 2344455543 3456777777 789988652
Q ss_pred cCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 340 ELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 340 ~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
.+++|++++++++++|+++++++|++.
T Consensus 323 ---~~~lR~~~~~~~~~~~i~~~~~~l~~~ 349 (353)
T PLN02721 323 ---SSRIRVVTHHQISDSDVQYTLSCFQQA 349 (353)
T ss_pred ---CceEEEEecCcCCHHHHHHHHHHHHHH
Confidence 268999999999999999999999863
|
|
| >PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.5e-20 Score=239.41 Aligned_cols=284 Identities=20% Similarity=0.207 Sum_probs=216.6
Q ss_pred HHHHHHHHHHHHhC------CCCC-cEEEeCCHHHHHHHHHHhc-ccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEE
Q psy15216 42 AIEKARNEVAQLIY------ADPR-EIIWTSGATESNNLAIKGA-AHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRV 113 (2602)
Q Consensus 42 ~~~~~r~~lA~~~g------~~~~-~Iv~t~g~T~al~~~~~~l-~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v 113 (2602)
..+++|+++|++++ .+++ +|++++|+.+++..++..+ . ++||.|+++.|.|+.+...++.. |+++
T Consensus 45 g~~~lr~~ia~~~~~~~~~~~~~~~~i~~~~G~~~~~~~~~~~~~~----~~~~~vlv~~P~y~~~~~~~~~~---g~~~ 117 (363)
T PF00155_consen 45 GYPELREAIADFLGRRYGVPVDPEANILVTSGAQAALFLLLRLLKI----NPGDTVLVPDPCYPSYIEAARLL---GAEV 117 (363)
T ss_dssp HHHHHHHHHHHHHHHHHTHHTTGGEGEEEESHHHHHHHHHHHHHHS----STTSEEEEEESSSTHHHHHHHHT---TSEE
T ss_pred hhHHHHHHHHHHhhhccCcccccceEEEEecccccchhhhhhcccc----cccccceecCCcccccccccccc---Ccee
Confidence 46788999999998 6777 8999999999999999888 5 79999999999999998877766 9999
Q ss_pred EEeccC--CCCccChHHHHhhccC------CceEEEEecccCcccccccHHHHHHH---HHhcCCEEEEeccccccccc-
Q psy15216 114 TYLKPK--NNGLITLSQLEEKICS------DTILVSVMLVNNEIGVIQPILEIGEL---CRSKGVIFHCDAAQAVGKID- 181 (2602)
Q Consensus 114 ~~v~~~--~~~~ld~e~l~~~i~~------~tklv~i~~~~npTG~~~~l~~I~~l---a~~~g~~livD~a~a~g~~~- 181 (2602)
+.++.+ .++.+|+++|++.+++ +++++++++|+||||..++.+++.++ |++||+++|+|++|+.....
T Consensus 118 ~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~De~y~~~~~~~ 197 (363)
T PF00155_consen 118 IPVPLDSENDFHLDPEALEEALDELPSKGPRPKAVLICNPNNPTGSVLSLEELRELAELAREYNIIIIVDEAYSDLIFGD 197 (363)
T ss_dssp EEEEEEETTTTEETHHHHHHHHHTSHTTTETEEEEEEESSBTTTTBB--HHHHHHHHHHHHHTTSEEEEEETTTTGBSSS
T ss_pred eeccccccccccccccccccccccccccccccceeeecccccccccccccccccchhhhhcccccceeeeeceeccccCC
Confidence 998864 5778999999999987 67899999999999999996665555 99999999999999764432
Q ss_pred -------ccCCCCCccEEEeccccccCCCC--cEEEEEecCCCCcccceecCCCccccccccCcchhHHHHHHHHHHHHH
Q psy15216 182 -------INIQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLAR 252 (2602)
Q Consensus 182 -------~dl~~~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~ 252 (2602)
..+......+++.|++|.+|.+| +||+++++++++.+..... .+..+.+...++..++....
T Consensus 198 ~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRvG~i~~~~~~~~~l~~~~~---------~~~~~~~~~~~~~~~l~~~~ 268 (363)
T PF00155_consen 198 PDFGPIRSLLDEDDNVIVVGSLSKSFGLPGLRVGYIVAPPELIERLRRFQR---------SGLSSSPMQAAAAAALSDPE 268 (363)
T ss_dssp SHTHHHHGHHTTTSTEEEEEESTTTTTSGGGTEEEEEEEHHHHHHHHHHHH---------HTTSSHHHHHHHHHHHHHHH
T ss_pred CccCcccccccccccceeeeeccccccccccccccccchhhhhhhhhhccc---------cccccchhhHHHHHhhhccc
Confidence 11122222488889999999888 8999998877776654331 22224444444445555222
Q ss_pred ---HhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcccChhHHHHHh--C-CeEEcccccCCCCCC
Q psy15216 253 ---IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI--K-DIAVSSGSACTSASL 326 (2602)
Q Consensus 253 ---~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~-gI~v~~g~~~~~~~~ 326 (2602)
.+.++..++++++++++.+.|.+ . ++.+..++.. ...++.++..+..++.+.| + ||.+.+|..+..
T Consensus 269 ~~~~~~~~~~~~l~~~~~~l~~~L~~-~-~~~~~~~~~~---~~~~~~~~~~~~~~l~~~L~~~~gi~v~pg~~~~~--- 340 (363)
T PF00155_consen 269 LVEKWLEELRERLRENRDLLREALEE-I-GITVLPPEAG---FFLWVRLDPNDAEELAQELLEEYGILVRPGSYFGV--- 340 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-T-TSEEEHHSBS---SEEEEEESHHHHHHHHHHHHHHHTEEEEEGGGGTS---
T ss_pred ccccccccchhhHHHHHHHHHHHHHH-h-hhheeeccCc---cEEEEEcccchHHHHHHHHHHhCCEEEEecCCCCC---
Confidence 36788999999999999999988 3 8887765432 3333334433456777777 4 999999886643
Q ss_pred ChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHH
Q psy15216 327 EPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLL 366 (2602)
Q Consensus 327 ~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L 366 (2602)
.+++|+++ ...+++++++++++|
T Consensus 341 ----------------~~~iRi~~-a~~~~e~~~~~~~~l 363 (363)
T PF00155_consen 341 ----------------PGYIRISL-ASHSEEDLEEALERL 363 (363)
T ss_dssp ----------------TTEEEEEG-GCSCHHHHHHHHHHH
T ss_pred ----------------CCEEEEEe-ccCCHHHHHHHHhhC
Confidence 28999999 557999999999876
|
On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A .... |
| >PRK06855 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-19 Score=237.02 Aligned_cols=340 Identities=16% Similarity=0.173 Sum_probs=224.1
Q ss_pred HHHHHHhcCCCccccceeeeeceeeeccCCCCCCCHHHHHHHHHHHhhc--cCCCCCccchhHHHHHHHHHHHHHHHHHH
Q psy15216 1372 IKNSLEMTGFKAESSGIVMRPYTNIVFKDATTPIDPRVVDKMIPYLRVQ--FGNPASRNHIYGWTAEKAIEKARNEVAQL 1449 (2602)
Q Consensus 1372 v~~aL~~~g~~~~~~ei~~iP~~~v~L~~~~~~~~~~v~eal~~~l~~~--~~np~~~~~~~~~~~~~~~~~lr~~ia~~ 1449 (2602)
....+++.|.++....++ .|.. ...++|+.+.+++.+.+... .+++. .....++|++++++
T Consensus 23 ~~~~~~~~g~~~~~~~~G-~p~~------~~~~~p~~~~~a~~~~~~~~~~~~Y~~----------~~G~~~LReaia~~ 85 (433)
T PRK06855 23 VAKKLEKLGVKITWENIG-DPIA------KGEKIPDWMKEIVAELVMDDKSYGYCP----------TKGVLETREFLAEL 85 (433)
T ss_pred HHHHHHhccccccccccC-CCcc------cCCCCCHHHHHHHHHHhhcCCCCCCCC----------CCCCHHHHHHHHHH
Confidence 333444445555544444 3411 12467778888888876431 11211 12246677888887
Q ss_pred h----C--CCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCC--CCCcC
Q psy15216 1450 I----Y--ADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLIT 1521 (2602)
Q Consensus 1450 ~----g--~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~id 1521 (2602)
+ | +++++|++|+|+++|+..++. +. ++||+|++++|.|+.+..... ...|++++.++.++ ++.+|
T Consensus 86 ~~~~~g~~~~~~~I~it~G~~~al~~~~~-l~----~~Gd~Vlv~~P~Y~~~~~~~~--~~~g~~~v~v~~~~~~~~~~d 158 (433)
T PRK06855 86 NNKRGGAQITPDDIIFFNGLGDAIAKIYG-LL----RREARVIGPSPAYSTHSSAEA--AHAGYPPVTYRLDPENNWYPD 158 (433)
T ss_pred HHhccCCCCCHhHEEEcCcHHHHHHHHHH-hc----CCCCeEEEeCCCCchHHHHHH--HhcCCeEEEEecccccCCCCC
Confidence 6 3 478899999999999998874 54 799999999999998653322 12378888888764 35689
Q ss_pred hhHHHhhcc--CCceEEEEeccccccccccC---hHHHHHHhhhcCCEEEEecccccC----ccccc---CCCCCccEEE
Q psy15216 1522 LSQLEEKIC--SDTILVSVMLVNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQAVG----KIDIN---IQNYKVDLMS 1589 (2602)
Q Consensus 1522 ~d~l~~~i~--~~t~lv~l~~~~n~tG~~~~---l~~I~~ia~~~gi~vivD~a~~~g----~~~~~---l~~~~~D~~v 1589 (2602)
+++|+++++ ++++++++++|+||||.+++ +++|+++|++||+++|+|++++.- ..+.+ +......+++
T Consensus 159 ~~~l~~~~~~~~~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~sl~~~~~~~~~I~~ 238 (433)
T PRK06855 159 LDDLENKVKYNPSIAGILLINPDNPTGAVYPKEILREIVDIAREYDLFIICDEIYNNIVYNGKKTVPLSEVIGDVPGIAL 238 (433)
T ss_pred HHHHHHHHhcCCCceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCCHHHHcCcCCeEEE
Confidence 999999996 46899999999999999999 667888899999999999997532 11111 1111124788
Q ss_pred EccccccCCCc--eEEEEEecCCC----Cc-cccccccCCccccCCCCCcchhHHHHHHHHHHH--HHHHHHHHHHHHHH
Q psy15216 1590 FSAHKIYGPKG--IGALYIRRNPR----TR-IEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRL--ARIEMKEELKRILF 1660 (2602)
Q Consensus 1590 ~S~~K~~gp~G--~G~l~~~~~~~----~~-l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~--~~~~~~~~~~~~~~ 1660 (2602)
.|++|.++++| +||+++++... .. +..... . ... ..+++...+.++..+++. ....+++.+..+++
T Consensus 239 ~S~SK~~~~pGlRiG~ii~p~~~~~~~~~~~~~~~~~-~---~~~-~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~ 313 (433)
T PRK06855 239 KGISKELPWPGSRCGWIEVYNADKDEVFKKYINSILN-A---KMI-EVCSTTLPQMAIPRIMSHPEYKNYLKERNKRYEK 313 (433)
T ss_pred ecCccccCCCcceEEEEEEeCCchhhHHHHHHHHHHH-h---hcc-ccCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHH
Confidence 89999888778 89999853111 11 111100 0 011 123445566666677752 24567788888899
Q ss_pred HHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEE--ecC----------------------------CcHHHHHhc---C
Q psy15216 1661 LQKRLYNGLMESIEEIYINGDMNNRIPHNLNISF--NFI----------------------------EGESLLMAI---K 1707 (2602)
Q Consensus 1661 l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~--~~~----------------------------~~~~~~~~L---~ 1707 (2602)
+++++.+.|.+ .+++.+..+.. ..++++ +.. +..+++..+ .
T Consensus 314 r~~~~~~~L~~-~~~~~~~~p~g-----g~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 387 (433)
T PRK06855 314 RSNIAYEKLKD-VPGLKVNRTNG-----AFYMTVVFEDGVLNNKQSLPIENPEVKEYVEGLVKGPVSPDKRFVYYLLAST 387 (433)
T ss_pred HHHHHHHHHhc-CCCeeccCCCe-----eEEEeeccccccccccccCCcchhhhHHHHHHHHhcCCCchHHHHHHHHHHc
Confidence 99999999976 56765443211 122222 211 123444333 7
Q ss_pred CEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1708 DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1708 gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
||.+.||..|... ..++|||+.. .+.++++..++.|++.
T Consensus 388 gV~v~PG~~F~~~------------------~~~~Rls~~~-~~~~~i~~~~~~l~~~ 426 (433)
T PRK06855 388 GICVVPLSSFCTE------------------LNGFRVTLLE-RDEEKFEWIYQTLAEK 426 (433)
T ss_pred CEEEecCCcCCCC------------------CCceEEEECC-CcHHHHHHHHHHHHHH
Confidence 9999999988532 1459999986 4689999999999874
|
|
| >PLN02231 alanine transaminase | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.2e-19 Score=237.68 Aligned_cols=327 Identities=17% Similarity=0.165 Sum_probs=221.7
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHh----C--CCCCcEEEeCCHHHHHHHHHHhhhhh
Q psy15216 1404 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI----Y--ADPREIIWTSGATESNNLAIKGAAHF 1477 (2602)
Q Consensus 1404 ~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~----g--~~~~~iv~t~gaT~al~~al~~l~~~ 1477 (2602)
..|..++++..+.++...+ ...+.|. ......++|+.+++++ | +++++|++|+|+++|+..++.++.
T Consensus 140 ~fp~~~i~~a~~~l~~~~~-~~~~~Y~----~s~G~~~lReaIA~~~~~r~g~~~~pe~I~iT~Ga~~ai~~~~~~l~-- 212 (534)
T PLN02231 140 LFSADAIERAWQILDQIPG-RATGAYS----HSQGIKGLRDAIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLI-- 212 (534)
T ss_pred cCCHHHHHHHHHHHHhcCC-ccccCcC----CCCCcHHHHHHHHHHHHhccCCCCCcccEEEeCCHHHHHHHHHHHhc--
Confidence 3445666666666654211 0111122 2234667788888876 4 477899999999999999999886
Q ss_pred hccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCC--CCCcChhHHHhhccC------CceEEEEecccccccccc
Q psy15216 1478 YKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICS------DTILVSVMLVNNEIGVIQ 1549 (2602)
Q Consensus 1478 ~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~id~d~l~~~i~~------~t~lv~l~~~~n~tG~~~ 1549 (2602)
..+||.|+++.|.|+.+...+... |++++.++.++ ++.+|+++|++++++ +++++++++|+||||.++
T Consensus 213 -~~~gd~Vli~~P~Y~~y~~~~~~~---g~~~v~~~l~~~~~~~~d~~~Le~~l~~~~~~~~~~k~ivl~nP~NPTG~vl 288 (534)
T PLN02231 213 -RSEKDGILCPIPQYPLYSASIALH---GGTLVPYYLDEATGWGLEISELKKQLEDARSKGITVRALVVINPGNPTGQVL 288 (534)
T ss_pred -cCCCCEEEEeCCCChhHHHHHHHc---CCEEEEEecCcccCCCCCHHHHHHHHHHHhhcCCCeEEEEEeCCCCCCCcCC
Confidence 147999999999999998777666 89999998875 367999999999865 689999999999999999
Q ss_pred C---hHHHHHHhhhcCCEEEEecccccCc-----ccccCCC---------CCc-cEEEEcccc-ccCCCc--eEEEEE--
Q psy15216 1550 P---ILEIGELCRSKGVIFHCDAAQAVGK-----IDINIQN---------YKV-DLMSFSAHK-IYGPKG--IGALYI-- 1606 (2602)
Q Consensus 1550 ~---l~~I~~ia~~~gi~vivD~a~~~g~-----~~~~l~~---------~~~-D~~v~S~~K-~~gp~G--~G~l~~-- 1606 (2602)
+ +++|+++|++||+++|+|++|..-. ....+.. ... -+++.|++| ++|++| +||+.+
T Consensus 289 s~e~l~~Iv~~a~~~~l~lI~DEvY~~l~y~~~~~~~s~~~~~~~~g~~~~~~~vi~l~S~SK~~~g~pGlRiGy~~~~~ 368 (534)
T PLN02231 289 AEENQRDIVEFCKQEGLVLLADEVYQENVYVPDKKFHSFKKVARSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTG 368 (534)
T ss_pred CHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCcccHHHHHhhhccccCCceEEEEeccCcccccCCccceEEEEEec
Confidence 8 6788999999999999999975311 1111110 111 255669999 667777 899987
Q ss_pred -ecCCCCccccccccCCccccCCCCCcchhHHHHHHHHHH-------HHH---HHHHHHHHHHHHHHHHHHHHHhhcCCc
Q psy15216 1607 -RRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFR-------LAR---IEMKEELKRILFLQKRLYNGLMESIEE 1675 (2602)
Q Consensus 1607 -~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~-------~~~---~~~~~~~~~~~~l~~~l~~~L~~~~~g 1675 (2602)
++++++.+.... .. ..+++..++.++..+++ ... ...+.+++.+.++++.+.+.|++ .++
T Consensus 369 ~~~~l~~~l~k~~-------~~-~~~s~~~~Q~~~~~~l~~p~~~~~~y~~~~~~~~~i~~~~~~r~~~l~~~L~~-~~g 439 (534)
T PLN02231 369 FTSDVREQIYKVA-------SV-NLCSNISGQILASLVMSPPKPGDESYESYMAEKDGILSSLARRAKTLEDALNS-LEG 439 (534)
T ss_pred CCHHHHHHHHHHH-------hh-hcCCChHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCC
Confidence 345555554321 11 12344455555555552 111 22345677889999999999987 678
Q ss_pred EEEeCCCCCCCCceEEEEEecCC----------------cHHHHHhc---CCEEEccccccCCCCCChhHHHHHcCCCcc
Q psy15216 1676 IYINGDMNNRIPHNLNISFNFIE----------------GESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDE 1736 (2602)
Q Consensus 1676 l~i~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~ 1736 (2602)
+.+..+ .+.++.|+... ...+...| .||.+.||+.|+..
T Consensus 440 i~~~~p------~Ggfylw~~l~lp~~~~~~~~~~~~~~d~~~~~~Ll~~~GV~vvPGs~Fg~~---------------- 497 (534)
T PLN02231 440 VTCNKA------EGAMYLFPRIHLPQKAIKAAEAAKTAPDAFYCKRLLNATGIVVVPGSGFGQV---------------- 497 (534)
T ss_pred ceecCC------CeeeEEeccccCcHHHHHHHhhcCCCcHHHHHHHHHHhcCEEEeCCcccCCC----------------
Confidence 877633 23334442210 11222323 69999999988642
Q ss_pred ccCCeEEEecCCCCCHHHHHHHHHHHHHhhhhhhhhhhhhhhhc
Q psy15216 1737 LAHSSIRFTIGRFTTEKEIDFTIKLLKMKEFFMSYSEKVLDHYE 1780 (2602)
Q Consensus 1737 ~~~~~iRls~~~~~t~edid~li~~L~~~~~~~~y~~~i~dh~~ 1780 (2602)
....++|+++. .+.++++..+++|++ +.+.+++-|+
T Consensus 498 ~g~~~~Rit~~--~~~e~l~eal~RL~~------~~~~~~~~~~ 533 (534)
T PLN02231 498 PGTWHFRCTIL--PQEDKIPAIVSRLTE------FHKSFMDEFR 533 (534)
T ss_pred CCCCeEEEEeC--CCHHHHHHHHHHHHH------HHHHHHHHhc
Confidence 11257999985 578999999999986 4444555554
|
|
| >PRK14808 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-19 Score=230.35 Aligned_cols=290 Identities=18% Similarity=0.112 Sum_probs=210.8
Q ss_pred CCCHHHHHHHHHHHhhh--cCCCCCCCcchhhhHHHHHHHHHHHHHHHhC---CCCCcEEEeCCHHHHHHHHHHhccccc
Q psy15216 8 PIDPRVVDKMIPYLRVQ--FGNPASRNHIYGWTAEKAIEKARNEVAQLIY---ADPREIIWTSGATESNNLAIKGAAHFY 82 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~--~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g---~~~~~Iv~t~g~T~al~~~~~~l~~~~ 82 (2602)
++|+.+++++.+.+... ..+|.. ...++|++++++++ .++++|++|+|+++++.+++.++
T Consensus 32 ~~p~~~~~~~~~~~~~~~~~~Y~~~-----------~~~~Lr~aia~~~~~~~~~~~~i~it~Ga~~~i~~~~~~~---- 96 (335)
T PRK14808 32 PFPEDLVDEVFRRLNSDTLRIYYDS-----------PDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVMMLMF---- 96 (335)
T ss_pred CCCHHHHHHHHHHhhhhhhhcCCCC-----------ChHHHHHHHHHHhCCCCCCcceEEEcCCHHHHHHHHHHHh----
Confidence 78889999998876431 112322 24678999999998 78899999999999999999875
Q ss_pred ccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHH
Q psy15216 83 KKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELC 162 (2602)
Q Consensus 83 ~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la 162 (2602)
|.|++++|+|+.+...++.+ |++++.++.++++.++... + .+++++++++||||||.+++.+++.+++
T Consensus 97 ----d~v~v~~P~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~~~----~-~~~~~i~i~nP~NPTG~~~s~~~l~~l~ 164 (335)
T PRK14808 97 ----DRSVFFPPTYSCYRIFAKAV---GAKFLEVPLTKDLRIPEVN----V-GEGDVVFIPNPNNPTGHVFEREEIERIL 164 (335)
T ss_pred ----CcEEECCCCHHHHHHHHHHc---CCeEEEecCCCcCCCChhH----c-cCCCEEEEeCCCCCCCCCcCHHHHHHHH
Confidence 46999999999988888777 9999999988776655332 2 3578999999999999999999999998
Q ss_pred HhcCCEEEEeccccccc--cccc-CCCCCccEEEeccccccCCCC--cEEEEEecCCCCcccceecCCCccccccccCcc
Q psy15216 163 RSKGVIFHCDAAQAVGK--IDIN-IQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLA 237 (2602)
Q Consensus 163 ~~~g~~livD~a~a~g~--~~~d-l~~~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~ 237 (2602)
++++++|+|+++..-. .... +.....-+++.|++|.+|++| +||+++++++++.+..... ..+.+
T Consensus 165 -~~~~~ii~DE~Y~~f~~~~~~~~~~~~~~vi~~~S~SK~~~l~GlRvG~~v~~~~~~~~l~~~~~---------~~~~~ 234 (335)
T PRK14808 165 -KTGAFVALDEAYYEFHGESYVDLLKKYENLAVIRTFSKAFSLAAQRIGYVVSSEKFIDAYNRVRL---------PFNVS 234 (335)
T ss_pred -hcCCEEEEECchhhhcCCchHHHHHhCCCEEEEEechhhccCcccceEEEEeCHHHHHHHHHhcC---------CCCCC
Confidence 5899999999985321 1111 112223477889999999888 8999999887776654331 12344
Q ss_pred hhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcccChhHHHHHh--CCeEE
Q psy15216 238 THQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDIAV 315 (2602)
Q Consensus 238 ~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~v 315 (2602)
.+...++.++++. .....+..+...+.++++.+.|.+ .|+.+..+. ..++.+.++..+..++.+.| +||.+
T Consensus 235 ~~~q~a~~~~l~~-~~~~~~~~~~~~~~r~~l~~~L~~--~g~~~~~~~----g~f~~~~l~~~~~~~~~~~l~~~Gi~V 307 (335)
T PRK14808 235 YVSQMFAKVALDH-REIFEERTKFIVEERERMKSALRE--MGYRITDSR----GNFVFIFMEKEEKERLLEHLRAKNIAV 307 (335)
T ss_pred HHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHHHHH--CCCEECCCC----CeEEEEeCCCccHHHHHHHHHHCCeEE
Confidence 4555555666653 234556666777778888888877 366655432 22334444444455666666 79999
Q ss_pred cccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 316 SSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 316 ~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
+. | .+++||+++ +.+++++++++|++
T Consensus 308 ~~---~---------------------~~~~Risi~---~~~~~~~~~~~l~~ 333 (335)
T PRK14808 308 RS---F---------------------REGVRITIG---KREENDMILKELEV 333 (335)
T ss_pred EE---C---------------------CCCeEEecC---CHHHHHHHHHHHHh
Confidence 72 2 157999998 78999999999985
|
|
| >PRK09148 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.4e-19 Score=234.07 Aligned_cols=311 Identities=14% Similarity=0.074 Sum_probs=213.5
Q ss_pred CCCHHHHHHHHHHHhh--ccCCCCCccchhHHHHHHHHHHHHHHHHHHh----C--CCCC-cEEEeCCHHHHHHHHHHhh
Q psy15216 1404 PIDPRVVDKMIPYLRV--QFGNPASRNHIYGWTAEKAIEKARNEVAQLI----Y--ADPR-EIIWTSGATESNNLAIKGA 1474 (2602)
Q Consensus 1404 ~~~~~v~eal~~~l~~--~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~----g--~~~~-~iv~t~gaT~al~~al~~l 1474 (2602)
+.++.+.+++.+.+.. ...|+.. ....++|+++++++ | ++++ +|++|+|+++++..++.++
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~Y~~~----------~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~l 112 (405)
T PRK09148 43 PTPQHIVDKLCETAQDPRTHRYSAS----------KGIPGLRRAQAAYYARRFGVKLNPDTQVVATLGSKEGFANMAQAI 112 (405)
T ss_pred CCCHHHHHHHHHHHcCcccCCCCCC----------CCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHHHHh
Confidence 4567788888777642 1222221 12456777777776 4 4576 8999999999999999998
Q ss_pred hhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCC--CcChhHHHhhccCCceEEEEeccccccccccCh-
Q psy15216 1475 AHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNG--LITLSQLEEKICSDTILVSVMLVNNEIGVIQPI- 1551 (2602)
Q Consensus 1475 ~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~--~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l- 1551 (2602)
. ++||+|++++|+|+.+...+... |++++.++.+.++ ..++++..+...++++++++++|+||||.++|.
T Consensus 113 ~----~~gd~Vl~~~P~y~~~~~~~~~~---g~~v~~v~~~~~~~~~~~l~~~~~~~~~~~~~v~l~~P~NPtG~~~s~~ 185 (405)
T PRK09148 113 T----APGDVILCPNPSYPIHAFGFIMA---GGVIRSVPAEPDEEFFPALERAVRHSIPKPIALIVNYPSNPTAYVADLD 185 (405)
T ss_pred c----CCCCEEEEcCCCCcccHHHHHhc---CCEEEEEeCCCCCCCccCHHHHHhhccccceEEEEeCCCCCCCcCCCHH
Confidence 7 89999999999999987776655 9999999986543 234444444445789999999999999999995
Q ss_pred --HHHHHHhhhcCCEEEEecccccCc----ccccCCCC----CccEEEEccccccCCCc--eEEEEEecCCCCccccccc
Q psy15216 1552 --LEIGELCRSKGVIFHCDAAQAVGK----IDINIQNY----KVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIH 1619 (2602)
Q Consensus 1552 --~~I~~ia~~~gi~vivD~a~~~g~----~~~~l~~~----~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~~ 1619 (2602)
++|.++|++||+++|+|++|..-. ....+... +..+++.||+|.+|++| +||++.++++++.+....
T Consensus 186 ~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~s~~~~~~~~~~~i~~~SfSK~~~~pGlR~G~~v~~~~~i~~l~~~~- 264 (405)
T PRK09148 186 FYKDVVAFAKKHDIIILSDLAYSEIYFDGNPPPSVLQVPGAKDVTVEFTSMSKTFSMAGWRMGFAVGNERLIAALTRVK- 264 (405)
T ss_pred HHHHHHHHHHHcCeEEEEeccchhhhcCCCCCCChhhCCCccCcEEEEeccccccCCcchheeeeeCCHHHHHHHHHHH-
Confidence 678889999999999999986311 11111111 23466889999999888 999999887776665432
Q ss_pred cCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecC--
Q psy15216 1620 GGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI-- 1697 (2602)
Q Consensus 1620 g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~-- 1697 (2602)
.....+.+.+.+.++..+|......++..++.+.+.++++.+.|.+ .++.+..+ . .+.++++...
T Consensus 265 ------~~~~~~~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~r~~l~~~L~~--~~~~~~~p-~----~g~f~~~~l~~~ 331 (405)
T PRK09148 265 ------SYLDYGAFTPIQVAATAALNGPQDCIAEMRELYKKRRDVLVESFGR--AGWDIPPP-A----ASMFAWAPIPEA 331 (405)
T ss_pred ------HHhccCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH--cCCccCCC-C----eeEEEEEECCCc
Confidence 1111233444455555566532345677788889999999999977 34433211 1 1222333211
Q ss_pred ----CcHHHHHhc---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1698 ----EGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1698 ----~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
+..++...+ +||.+.+|..|... ..+++||++. .+.+++..+++.|.+
T Consensus 332 ~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~-----------------~~~~~Ri~~~--~~~~~l~~al~~l~~ 386 (405)
T PRK09148 332 FRHLGSLEFSKLLVEKADVAVAPGVGFGEH-----------------GDGYVRIALV--ENEQRIRQAARNIKR 386 (405)
T ss_pred cCCCCHHHHHHHHHHhCCEEEeCchhhCCC-----------------CCCeEEEEec--CCHHHHHHHHHHHHH
Confidence 234555443 69999999876431 1278999997 467888888888876
|
|
| >cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT) | Back alignment and domain information |
|---|
Probab=99.85 E-value=1e-19 Score=238.95 Aligned_cols=333 Identities=19% Similarity=0.199 Sum_probs=229.7
Q ss_pred CCCCCCCCHHHHHHHHHHHhhhc--CCCCCCCcchhhhHHHHHHH-HHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcc
Q psy15216 3 YSATTPIDPRVVDKMIPYLRVQF--GNPASRNHIYGWTAEKAIEK-ARNEVAQLIYADPREIIWTSGATESNNLAIKGAA 79 (2602)
Q Consensus 3 ~a~~~~~p~~v~~a~~~~l~~~~--~~p~~~~~~~~~~~~~~~~~-~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~ 79 (2602)
+++.++.++.|++++.+++...+ ++|+. .+..+....+.+++ .++.+++++|++...|+++ |+|+|+.+++.++.
T Consensus 25 ~~~~~~~~~~v~~a~~~~~~~~~~~g~~~~-~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~v~~~-sgt~a~~~~l~~l~ 102 (402)
T cd00378 25 IASENFTSPAVMEAMGSDLTNKYAEGYPGK-RYYGGCEYVDEIEDLAIERAKKLFGAEYANVQPH-SGSQANLAVYFALL 102 (402)
T ss_pred eccCCcCCHHHHHHhcccccccccCCCCCC-cccCCchHHHHHHHHHHHHHHHHhCCCceeeecC-CcHHHHHHHHHHhc
Confidence 35667889999999988775444 45544 22223333344444 6778899999976556555 56799999999987
Q ss_pred cccccCCCEEEEcCCCCcccHHHHHH--HHhCCcEEEEeccCC---CCccChHHHHhhcc-CCceEEEEecccCcccccc
Q psy15216 80 HFYKKRGKHIITVQTEHKSVLDSIRK--LENDGFRVTYLKPKN---NGLITLSQLEEKIC-SDTILVSVMLVNNEIGVIQ 153 (2602)
Q Consensus 80 ~~~~~~gd~Vlv~~~~~~s~~~~~~~--~~~~G~~v~~v~~~~---~~~ld~e~l~~~i~-~~tklv~i~~~~npTG~~~ 153 (2602)
++||+|++++++|+++...+.. ++..|.+++.++.+. ++.+|++++++++. ++++++++++++| |...
T Consensus 103 ----~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~i~~~~~~~v~~~~~~~--~~~~ 176 (402)
T cd00378 103 ----EPGDTIMGLDLSHGGHLTHGSFTKVSASGKLFESVPYGVDPETGLIDYDALEKMALEFKPKLIVAGASAY--PRPI 176 (402)
T ss_pred ----CCCCEEEEecCccCccccccccccccccceeEEEecCCcCcccCCcCHHHHHHHHHhCCCCEEEecCccc--CCCc
Confidence 8999999999999987554332 344587777776543 57899999999985 6899999988876 4677
Q ss_pred cHHHHHHHHHhcCCEEEEecccccccc-----cccCCCCCccEEEecccccc-CCCCcEEEEEec-CCCCcccceecCCC
Q psy15216 154 PILEIGELCRSKGVIFHCDAAQAVGKI-----DINIQNYKVDLMSFSAHKIY-GPKGIGALYIRR-NPRTRIEAQIHGGG 226 (2602)
Q Consensus 154 ~l~~I~~la~~~g~~livD~a~a~g~~-----~~dl~~~~~D~~~~S~~K~~-Gp~G~G~l~~~~-~~~~~l~~~~~g~~ 226 (2602)
|+++|+++|++||+++++|++|+.|.. +.++. ++|++++|+||++ ||+| |+++.++ ++.+.+......
T Consensus 177 ~~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~~~~~--~~dv~~~s~sK~l~G~~g-g~i~~~~~~~~~~l~~~~~~-- 251 (402)
T cd00378 177 DFKRFREIADEVGAYLLVDMAHVAGLVAGGVFPNPLP--GADVVTTTTHKTLRGPRG-GLILTRKGELAKKINSAVFP-- 251 (402)
T ss_pred CHHHHHHHHHhcCCEEEEEccchhhhhhcccCCCccc--CCcEEEeccccCCCCCCc-eEEEeccHHHHHHHHHHhCc--
Confidence 999999999999999999999866542 33333 5789999999955 7776 7666665 666665432211
Q ss_pred ccccccccCcchhHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc--cCh
Q psy15216 227 HEYGLRSGTLATHQIVGMGEAFRLAR-IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF--IEG 303 (2602)
Q Consensus 227 ~~~~~~~gt~~~~~~~al~~al~~~~-~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~--~~~ 303 (2602)
...+++....+.++..++.... .++++..+++.++++++.+.|.+ . |+.++..+.. .+.+++.++. .+.
T Consensus 252 ----~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~--~~~v~v~~~~~~~~~ 323 (402)
T cd00378 252 ----GLQGGPHLHVIAAKAVALKEALEPEFKAYAKQVVENAKALAEALKE-R-GFKVVSGGTD--NHLVLVDLRPKGITG 323 (402)
T ss_pred ----cccCCchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh-C-CCeEeecCCC--CeEEEEeCCccCCCH
Confidence 1234555566666666666333 35678888899999999999987 3 7776532221 2344444442 234
Q ss_pred hHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCC----CHHHHHHHHHHHHhh
Q psy15216 304 ESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFT----TEKEIDFTIKLLKMK 369 (2602)
Q Consensus 304 ~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~----t~edid~li~~L~~~ 369 (2602)
..+...| +||.+++... |... .+ .....++|++++..+ +++|++.+++.|++.
T Consensus 324 ~~~~~~l~~~gI~v~~~~~--p~~~--------~~---~~~~~~lRi~~~~~~~~~~~~~di~~~~~~l~~~ 382 (402)
T cd00378 324 KAAEDALEEAGITVNKNTL--PWDP--------SS---PFVPSGIRIGTPAMTTRGMGEEEMEEIADFIARA 382 (402)
T ss_pred HHHHHHHHHcCcEEcCCcC--CCCC--------CC---CCCCCeeEecCHHHHHhCCCHHHHHHHHHHHHHH
Confidence 4444445 6999986432 2100 00 112368999987654 699999999999973
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites. |
| >PRK00011 glyA serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.7e-20 Score=240.24 Aligned_cols=332 Identities=18% Similarity=0.231 Sum_probs=227.0
Q ss_pred CCCCCCCHHHHHHHHHHHhhhc--CCCCCCCcchhhhHHHHHHH-HHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhccc
Q psy15216 4 SATTPIDPRVVDKMIPYLRVQF--GNPASRNHIYGWTAEKAIEK-ARNEVAQLIYADPREIIWTSGATESNNLAIKGAAH 80 (2602)
Q Consensus 4 a~~~~~p~~v~~a~~~~l~~~~--~~p~~~~~~~~~~~~~~~~~-~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~ 80 (2602)
++.+|+|+.+++++..++...+ +++++ .+..+......+++ +++.+++++|+++.+|++++ +|+|+..++.++.
T Consensus 32 ~~~n~~~~~v~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~~~~~~la~~~g~~~~~i~~~s-gt~al~~~l~~l~- 108 (416)
T PRK00011 32 ASENFVSPAVMEAQGSVLTNKYAEGYPGK-RYYGGCEYVDVVEQLAIDRAKELFGAEYANVQPHS-GSQANAAVYFALL- 108 (416)
T ss_pred cccCcCCHHHHHHHhchhhcccccCCCCc-cccccchHHHHHHHHHHHHHHHHhCCCceeeecCC-chHHHHHHHHHhc-
Confidence 4455789999999988765433 34433 22223334445555 68899999999876676655 5789999999887
Q ss_pred ccccCCCEEEEcCCCCcccHHHHHH--HHhCCcEEEEeccCC-CCccChHHHHhhccC-CceEEEEecccCcccccccHH
Q psy15216 81 FYKKRGKHIITVQTEHKSVLDSIRK--LENDGFRVTYLKPKN-NGLITLSQLEEKICS-DTILVSVMLVNNEIGVIQPIL 156 (2602)
Q Consensus 81 ~~~~~gd~Vlv~~~~~~s~~~~~~~--~~~~G~~v~~v~~~~-~~~ld~e~l~~~i~~-~tklv~i~~~~npTG~~~~l~ 156 (2602)
++||+|+++.++|+++...+.. +...|++++.+++++ ++.+|++++++++++ +|+++++++++ +|...|++
T Consensus 109 ---~~gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~k~v~~~~~~--~~~~~~~~ 183 (416)
T PRK00011 109 ---KPGDTILGMDLAHGGHLTHGSPVNFSGKLYNVVSYGVDEETGLIDYDEVEKLALEHKPKLIIAGASA--YSRPIDFK 183 (416)
T ss_pred ---CCCCEEEEeccccCCccccccccccccceeeEeecCcCcccCCcCHHHHHHHHHhcCCCEEEECCCc--CCCccCHH
Confidence 8999999999999876433321 123478888888874 578999999999974 79999887543 56778999
Q ss_pred HHHHHHHhcCCEEEEecccccccc-----cccCCCCCccEEEeccccc-cCCCCcEEEEEe-cCCCCcccceecCCCccc
Q psy15216 157 EIGELCRSKGVIFHCDAAQAVGKI-----DINIQNYKVDLMSFSAHKI-YGPKGIGALYIR-RNPRTRIEAQIHGGGHEY 229 (2602)
Q Consensus 157 ~I~~la~~~g~~livD~a~a~g~~-----~~dl~~~~~D~~~~S~~K~-~Gp~G~G~l~~~-~~~~~~l~~~~~g~~~~~ 229 (2602)
+|.++|++||+++|+|++|+.|.. +.++. ++|++++|+||+ .||+| |+++.+ +++.+.+......+
T Consensus 184 ~I~~la~~~~~~livD~a~~~g~~~~g~~~~~~~--~~di~~~S~~K~l~g~~g-g~i~~~~~~~~~~l~~~~~~~---- 256 (416)
T PRK00011 184 RFREIADEVGAYLMVDMAHIAGLVAAGVHPSPVP--HADVVTTTTHKTLRGPRG-GLILTNDEELAKKINSAVFPG---- 256 (416)
T ss_pred HHHHHHHHcCCEEEEECcchhcccccCccCCCCC--CCcEEEecCCcCCCCCCc-eEEEeCCHHHHHHHHHHhCcc----
Confidence 999999999999999999987653 33333 679999999994 47775 777775 56666664332111
Q ss_pred cccccCcchhHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc--cChhHH
Q psy15216 230 GLRSGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF--IEGESL 306 (2602)
Q Consensus 230 ~~~~gt~~~~~~~al~~al~-~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~--~~~~~~ 306 (2602)
..+++....++++..++. ....++++..+++.++++++++.|.+ .|+++... ....+.+.+.++. .+...+
T Consensus 257 --~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~--~g~~~~~~--~~~~~~~~i~~~~~~~~~~~~ 330 (416)
T PRK00011 257 --IQGGPLMHVIAAKAVAFKEALEPEFKEYAQQVVKNAKALAEALAE--RGFRVVSG--GTDNHLVLVDLRSKGLTGKEA 330 (416)
T ss_pred --ccCCccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh--CCCeeeec--CCCCeEEEEeCcccCCCHHHH
Confidence 123455555555555554 34456788899999999999999987 47776531 1122444444432 245666
Q ss_pred HHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCC----CCCHHHHHHHHHHHHhh
Q psy15216 307 LMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGR----FTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 307 ~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~----~~t~edid~li~~L~~~ 369 (2602)
.+.| +||.++.+...... . .......+|++... ..+++|+++++++|++.
T Consensus 331 ~~~L~~~GI~v~~~~~p~~~--~-----------~~~~~~~~Ri~~~~~~~~~~t~~di~~l~~~l~~~ 386 (416)
T PRK00011 331 EAALEEANITVNKNAVPFDP--R-----------SPFVTSGIRIGTPAITTRGFKEAEMKEIAELIADV 386 (416)
T ss_pred HHHHHHcCcEEccCcCCCCC--C-----------CCCCCCceEecCHHHhhcCcCHHHHHHHHHHHHHH
Confidence 6666 69998744311100 0 00112568996532 35799999999999863
|
|
| >PRK05958 8-amino-7-oxononanoate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.8e-19 Score=235.90 Aligned_cols=317 Identities=20% Similarity=0.187 Sum_probs=220.7
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCC
Q psy15216 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK 87 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd 87 (2602)
++++.+.+++.+++... ..+.. .+.......+..++++++++++++. + +.++++++++++..++.++. ++||
T Consensus 53 ~~~~~v~~a~~~~~~~~-~~~~~-~~~~~~g~~~~~~~l~~~la~~~~~-~-~~i~~~~g~~~~~~~l~~~~----~~gd 124 (385)
T PRK05958 53 ARHPRLIAAAQQAARRY-GAGSG-GSRLVTGNSPAHEALEEELAEWFGA-E-RALLFSSGYAANLAVLTALA----GKGD 124 (385)
T ss_pred CCCHHHHHHHHHHHHhc-CCCCC-CcCcccCCcHHHHHHHHHHHHHhCC-C-cEEEECcHHHHHHHHHHHhC----CCCC
Confidence 36789999999988652 21111 1121122345678899999999994 3 44445556677777777665 8999
Q ss_pred EEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccC---CceEEEEecccCcccccccHHHHHHHHHh
Q psy15216 88 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS---DTILVSVMLVNNEIGVIQPILEIGELCRS 164 (2602)
Q Consensus 88 ~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~---~tklv~i~~~~npTG~~~~l~~I~~la~~ 164 (2602)
+|++++++|+++...+... |++++.++. .|++++++.+++ ++.++++.+++|+||.+.|+++|.++|++
T Consensus 125 ~V~~~~~~~~~~~~~~~~~---g~~~~~~~~-----~d~~~l~~~i~~~~~~~~lvi~~~~~~~~G~~~~l~~i~~ia~~ 196 (385)
T PRK05958 125 LIVSDKLNHASLIDGARLS---RARVRRYPH-----NDVDALEALLAKWRAGRALIVTESVFSMDGDLAPLAELVALARR 196 (385)
T ss_pred EEEEeCccCHHHHHHHHhc---CCceEEeCC-----CCHHHHHHHHHhccCCCeEEEEEecccCCCCcCCHHHHHHHHHH
Confidence 9999999999988776554 888888764 378999998865 36788888899999999999999999999
Q ss_pred cCCEEEEecccccccccc---------cCCCCCccEEEeccccccCCCCcEEEEEecCCCCcccceecCCCccccccccC
Q psy15216 165 KGVIFHCDAAQAVGKIDI---------NIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGT 235 (2602)
Q Consensus 165 ~g~~livD~a~a~g~~~~---------dl~~~~~D~~~~S~~K~~Gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt 235 (2602)
||+++|+|++|+.+..+. .+.....++++.|+||.+|++| |+++.++++.+.+..... .. ...+.
T Consensus 197 ~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-g~~~~~~~~~~~~~~~~~----~~-~~~~~ 270 (385)
T PRK05958 197 HGAWLLVDEAHGTGVLGPQGRGLAAEAGLAGEPDVILVGTLGKALGSSG-AAVLGSETLIDYLINRAR----PF-IFTTA 270 (385)
T ss_pred hCCEEEEECcccccccCCCCCchHHhhCCCCCCceEEEEechhhcccCC-cEEEcCHHHHHHHHHhCc----cc-eecCC
Confidence 999999999997654321 1222234588899999999887 888888766554432110 00 11233
Q ss_pred cchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc-cChhHHHHHh--CC
Q psy15216 236 LATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGESLLMAI--KD 312 (2602)
Q Consensus 236 ~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~L--~g 312 (2602)
++..+++++.++++..... ++..+++.++++++.+.|.+ .++++..+. ..++.+.++. .+..++.+.| +|
T Consensus 271 ~~~~~~aa~~aal~~~~~~-~~~~~~~~~~~~~l~~~L~~--~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~g 343 (385)
T PRK05958 271 LPPAQAAAARAALRILRRE-PERRERLAALIARLRAGLRA--LGFQLMDSQ----SAIQPLIVGDNERALALAAALQEQG 343 (385)
T ss_pred CCHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHH--cCCCcCCCC----CCEEEEEeCCHHHHHHHHHHHHHCC
Confidence 5556666677788755443 57788899999999999987 245544321 2234444443 2345666666 78
Q ss_pred eEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 313 IAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 313 I~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
|.+++......+ ...+++||+++.+++++|+++++++|++.
T Consensus 344 I~v~~~~~~~~~----------------~~~~~lRis~~~~~~~~~i~~~l~~l~~~ 384 (385)
T PRK05958 344 FWVGAIRPPTVP----------------AGTSRLRITLTAAHTEADIDRLLEALAEA 384 (385)
T ss_pred ceEecccCCCCC----------------CCCceEEEEecCCCCHHHHHHHHHHHHhc
Confidence 999764322110 01368999999999999999999999853
|
|
| >PRK03321 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.6e-20 Score=235.00 Aligned_cols=309 Identities=13% Similarity=0.114 Sum_probs=221.5
Q ss_pred eeeeccCC--CCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHH
Q psy15216 1394 TNIVFKDA--TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAI 1471 (2602)
Q Consensus 1394 ~~v~L~~~--~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al 1471 (2602)
+.+.++.+ ..++++.+.+++.+.+.....+|.. ...++|+.+++++++++++|++|+|+++++..++
T Consensus 23 ~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~y~~~-----------g~~~lr~~ia~~~~~~~~~I~~~~G~~~~l~~~~ 91 (352)
T PRK03321 23 GAIKLSSNETPFGPLPSVRAAIARAAAGVNRYPDM-----------GAVELRAALAEHLGVPPEHVAVGCGSVALCQQLV 91 (352)
T ss_pred cceeccCCCCCCCCCHHHHHHHHHHHHhcCcCCCC-----------cHHHHHHHHHHHhCcCHHHEEECCCHHHHHHHHH
Confidence 34555432 3456778999998887654444432 2578999999999998889999999999999998
Q ss_pred HhhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccCCceEEEEeccccccccccCh
Q psy15216 1472 KGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPI 1551 (2602)
Q Consensus 1472 ~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l 1551 (2602)
.++. ++||+|+++.|.|+.+....+. .|++++.++.++++.+|+++++++++++++++++++|+||||.++|.
T Consensus 92 ~~~~----~~gd~Vli~~p~y~~~~~~~~~---~g~~~~~v~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~ 164 (352)
T PRK03321 92 QATA----GPGDEVIFAWRSFEAYPILVQV---AGATPVQVPLTPDHTHDLDAMAAAITDRTRLIFVCNPNNPTGTVVTP 164 (352)
T ss_pred HHhc----CCCCEEEeCCCCHHHHHHHHHH---cCCEEEEccCCCCCCCCHHHHHHhhccCCCEEEEeCCCCCcCCCcCH
Confidence 8776 8999999999888776554444 49999999988678899999999999999999999999999999999
Q ss_pred HHHHHHhhh--cCCEEEEecccccCc----cc--ccC-CCCCccEEEEccccccCCCc--eEEEEEecCCCCcccccccc
Q psy15216 1552 LEIGELCRS--KGVIFHCDAAQAVGK----ID--INI-QNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHG 1620 (2602)
Q Consensus 1552 ~~I~~ia~~--~gi~vivD~a~~~g~----~~--~~l-~~~~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~~g 1620 (2602)
++|.++|+. +++++++|++|.... .+ +.. ...+.-+++.|++|.+|++| +||+++++++++.+....
T Consensus 165 ~~l~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~v~~~~~~~~~~~~~-- 242 (352)
T PRK03321 165 AELARFLDAVPADVLVVLDEAYVEYVRDDDVPDGLELVRDHPNVVVLRTFSKAYGLAGLRVGYAVGHPEVIAALRKVA-- 242 (352)
T ss_pred HHHHHHHHhCCCCeEEEEechHHHhccCcCCCcHHHHHhhCCCEEEEecchHHhhhHHHhhhhhcCCHHHHHHHHHhc--
Confidence 999999987 599999999985321 11 111 11123466779999888888 899999887776665431
Q ss_pred CCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEec-CCc
Q psy15216 1621 GGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEG 1699 (2602)
Q Consensus 1621 ~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~-~~~ 1699 (2602)
...+.+...+.++.+++.... .+.+..++..+.++++.+.|.+ .++.+. ++ .+.++++.. .+.
T Consensus 243 -------~~~~~s~~~q~~a~~~l~~~~-~~~~~~~~~~~~r~~~~~~L~~--~~~~~~-~~-----~g~~i~i~l~~~~ 306 (352)
T PRK03321 243 -------VPFSVNSLAQAAAIASLAAED-ELLERVDAVVAERDRVRAALRA--AGWTVP-PS-----QANFVWLPLGERT 306 (352)
T ss_pred -------CCCCCCHHHHHHHHHHhcCHH-HHHHHHHHHHHHHHHHHHHHHH--CCCccC-CC-----CCCEEEEeCCCCH
Confidence 123455556555556665222 2334444455566778888876 254432 11 122344432 234
Q ss_pred HHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1700 ESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1700 ~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
.++...| +||.+++ |.. .+|||+++ +.+++++++++|++
T Consensus 307 ~~~~~~l~~~gI~v~~---~~~--------------------~~iRi~~~---~~~~~~~~~~al~~ 347 (352)
T PRK03321 307 ADFAAAAAEAGVVVRP---FAG--------------------EGVRVTIG---APEENDAFLRAARA 347 (352)
T ss_pred HHHHHHHHHCCEEEEc---cCC--------------------CcEEEeeC---CHHHHHHHHHHHHH
Confidence 5666666 7999874 221 45999986 88999999999986
|
|
| >PRK08636 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.7e-19 Score=233.98 Aligned_cols=312 Identities=15% Similarity=0.122 Sum_probs=211.4
Q ss_pred CCHHHHHHHHHHHhh--ccCCCCCccchhHHHHHHHHHHHHHHHHHHh----C--CCCC-cEEEeCCHHHHHHHHHHhhh
Q psy15216 1405 IDPRVVDKMIPYLRV--QFGNPASRNHIYGWTAEKAIEKARNEVAQLI----Y--ADPR-EIIWTSGATESNNLAIKGAA 1475 (2602)
Q Consensus 1405 ~~~~v~eal~~~l~~--~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~----g--~~~~-~iv~t~gaT~al~~al~~l~ 1475 (2602)
.+..+.+++.+.... ...++.. ....++|+.+++++ | ++++ +|++|+|+++|+.+++.++.
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~Y~~~----------~G~~~lR~~ia~~l~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~ 116 (403)
T PRK08636 47 TPQHIIDKLCESAQKPKTHGYSVS----------KGIYKLRLAICNWYKRKYNVDLDPETEVVATMGSKEGYVHLVQAIT 116 (403)
T ss_pred CCHHHHHHHHHHhcCCccCCCCCC----------CCCHHHHHHHHHHHHHHhCCCCCCCCeEEECCChHHHHHHHHHHhC
Confidence 455667776665532 1222221 12345666666665 5 4666 79999999999999999987
Q ss_pred hhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccC--CCCCcChhH----HHhhcc---CCceEEEEeccccccc
Q psy15216 1476 HFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK--NNGLITLSQ----LEEKIC---SDTILVSVMLVNNEIG 1546 (2602)
Q Consensus 1476 ~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~--~~~~id~d~----l~~~i~---~~t~lv~l~~~~n~tG 1546 (2602)
++||.|++++|+|+.+...+... |++++.++.+ .++.+|++. +++++. ++++++++++|+||||
T Consensus 117 ----~~gd~Vlv~~P~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~i~~~~P~NPTG 189 (403)
T PRK08636 117 ----NPGDVAIVPDPAYPIHSQAFILA---GGNVHKMPLEYNEDFELDEDQFFENLEKALRESSPKPKYVVVNFPHNPTT 189 (403)
T ss_pred ----CCCCEEEEcCCCCcchHHHHHhc---CCEEEEEeccccccCccChhhhhhHHHHHHhhccCCceEEEEeCCCCCCC
Confidence 89999999999999988777665 9999999874 346788775 455553 5789999999999999
Q ss_pred cccC---hHHHHHHhhhcCCEEEEecccccCc----cccc---CCCC-CccEEEEccccccCCCc--eEEEEEecCCCCc
Q psy15216 1547 VIQP---ILEIGELCRSKGVIFHCDAAQAVGK----IDIN---IQNY-KVDLMSFSAHKIYGPKG--IGALYIRRNPRTR 1613 (2602)
Q Consensus 1547 ~~~~---l~~I~~ia~~~gi~vivD~a~~~g~----~~~~---l~~~-~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~ 1613 (2602)
.+++ +++|+++|++|++++|+|++++.-. .... +... +..+++.|++|.+|.+| +||++.++++++.
T Consensus 190 ~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~iv~~~~li~~ 269 (403)
T PRK08636 190 ATVEKSFYERLVALAKKERFYIISDIAYADITFDGYKTPSILEVEGAKDVAVESYTLSKSYNMAGWRVGFVVGNKKLVGA 269 (403)
T ss_pred ccCCHHHHHHHHHHHHHcCcEEEEeccchhhccCCCCCCChhcCCCccccEEEEEecccccCCccceeeeeeCCHHHHHH
Confidence 9999 5688889999999999999975321 1111 2111 12355789999888778 8999998877766
Q ss_pred cccccccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEE
Q psy15216 1614 IEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNIS 1693 (2602)
Q Consensus 1614 l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~ 1693 (2602)
+..... ....++..+.+. ++..++......+++.++.+.++++.+.+.|.. . ++.+..+... ....+.
T Consensus 270 ~~~~~~------~~~~~~~~~~q~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-~~~~~~p~~g---~~~~~~ 337 (403)
T PRK08636 270 LKKIKS------WLDYGMFTPIQV-AATIALDGDQSCVEEIRETYRKRRDVLIESFAN-A-GWELQKPRAS---MFVWAK 337 (403)
T ss_pred HHHHHH------HhcccCChHHHH-HHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH-C-CCcccCCCcc---eEEEEE
Confidence 544321 001223333333 333455422345677788888888999999987 2 5544322111 112222
Q ss_pred Eec----CCcHHHHHh-c--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1694 FNF----IEGESLLMA-I--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1694 ~~~----~~~~~~~~~-L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
++. .+..++... + +||.+.+|..|... ..+++||+++ .+.++++..++.|++
T Consensus 338 l~~~~~~~~~~~l~~~ll~~~gV~v~pg~~f~~~-----------------~~~~iRi~~~--~~~~~l~~~~~rl~~ 396 (403)
T PRK08636 338 IPEPARHLGSLEFSKQLLTEAKVAVSPGIGFGEY-----------------GDEYVRIALI--ENENRIRQAARNIKK 396 (403)
T ss_pred CCCccCCCCHHHHHHHHHHhCCEEEecchhhCcC-----------------CCCeEEEEec--CCHHHHHHHHHHHHH
Confidence 221 123556554 3 69999999877432 1279999997 478999999998886
|
|
| >PRK07309 aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.7e-19 Score=232.99 Aligned_cols=311 Identities=14% Similarity=0.142 Sum_probs=216.8
Q ss_pred CCCHHHHHHHHHHHhhc-cCCCCCccchhHHHHHHHHHHHHHHHHHHh----CC--C-CCcEEEeCCHHHHHHHHHHhhh
Q psy15216 1404 PIDPRVVDKMIPYLRVQ-FGNPASRNHIYGWTAEKAIEKARNEVAQLI----YA--D-PREIIWTSGATESNNLAIKGAA 1475 (2602)
Q Consensus 1404 ~~~~~v~eal~~~l~~~-~~np~~~~~~~~~~~~~~~~~lr~~ia~~~----g~--~-~~~iv~t~gaT~al~~al~~l~ 1475 (2602)
..++.+.+++.+.+... ..++.. ....++|+++++++ +. + +++|++|+|+++|+++++.++.
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~Y~~~----------~g~~~lr~~ia~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~ 112 (391)
T PRK07309 43 TTPDHVKEAAKRAIDANQSHYTGM----------AGLLELRQAAADFVKEKYNLDYAPENEILVTIGATEALSASLTAIL 112 (391)
T ss_pred CCCHHHHHHHHHHHhcCCCCCCCC----------CCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhc
Confidence 44667788888776532 112111 11356667777765 43 3 4689999999999999999886
Q ss_pred hhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCC-CCCcChhHHHhhccC---CceEEEEeccccccccccC-
Q psy15216 1476 HFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NGLITLSQLEEKICS---DTILVSVMLVNNEIGVIQP- 1550 (2602)
Q Consensus 1476 ~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~-~~~id~d~l~~~i~~---~t~lv~l~~~~n~tG~~~~- 1550 (2602)
++||+|++++|.|+.+...++.. |++++.++.+. ++.+|++.+++++.+ +++++++++|+||||.+++
T Consensus 113 ----~~gd~vl~~~p~y~~~~~~~~~~---g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~i~l~~P~NPtG~~~s~ 185 (391)
T PRK07309 113 ----EPGDKVLLPAPAYPGYEPIVNLV---GAEIVEIDTTENDFVLTPEMLEKAILEQGDKLKAVILNYPANPTGVTYSR 185 (391)
T ss_pred ----CCCCEEEEeCCCCcchHHHHHHc---CCEEEEEecCCcCCcCCHHHHHHHhhccCCCeEEEEEECCCCCCCcCcCH
Confidence 89999999999999987766655 99999998865 356899999999864 6899999999999999998
Q ss_pred --hHHHHHHhhhcCCEEEEecccccCc----ccccCCCC--CccEEEEccccccCCCc--eEEEEEecCCCCcccccccc
Q psy15216 1551 --ILEIGELCRSKGVIFHCDAAQAVGK----IDINIQNY--KVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHG 1620 (2602)
Q Consensus 1551 --l~~I~~ia~~~gi~vivD~a~~~g~----~~~~l~~~--~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~~g 1620 (2602)
+++|+++|++||+++|+|++++.-. ...++... ...+++.|++|.+|++| +||++.++++++.+....
T Consensus 186 ~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRvG~~v~~~~~~~~~~~~~-- 263 (391)
T PRK07309 186 EQIKALADVLKKYDIFVISDEVYSELTYTGEPHVSIAEYLPDQTILINGLSKSHAMTGWRIGLIFAPAEFTAQLIKSH-- 263 (391)
T ss_pred HHHHHHHHHHHHcCcEEEEEccccceeeCCCCCCCHHHhccCCEEEEecChhhccCccceeEEEEeCHHHHHHHHHHH--
Confidence 7788899999999999999986422 11122111 23478889999888778 899999988776654321
Q ss_pred CCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEE--Eec-C
Q psy15216 1621 GGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNIS--FNF-I 1697 (2602)
Q Consensus 1621 ~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~--~~~-~ 1697 (2602)
.+...+++...+.++..+|..........++++.+.++++.+.|.+ . ++.+..+.. ..+++ ++. .
T Consensus 264 -----~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~-~-~~~~~~p~g-----g~~~~~~l~~~~ 331 (391)
T PRK07309 264 -----QYLVTAATTMAQFAAVEALTNGKDDALPMKKEYIKRRDYIIEKMTD-L-GFKIIKPDG-----AFYIFAKIPAGY 331 (391)
T ss_pred -----hhcccCCChHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHH-C-CCeecCCCe-----eEEEEEECCCCC
Confidence 1112234445555555666522222345566777888889898877 3 555543211 12222 232 1
Q ss_pred --CcHHHHHhc---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1698 --EGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1698 --~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
+..++...+ +||.+.+|..|... ..+++||+++. +.++++.++++|++
T Consensus 332 ~~~~~~~~~~l~~~~gv~v~pg~~f~~~-----------------~~~~iRi~~~~--~~~~l~~~i~~l~~ 384 (391)
T PRK07309 332 NQDSFKFLQDFARKKAVAFIPGAAFGPY-----------------GEGYVRLSYAA--SMETIKEAMKRLKE 384 (391)
T ss_pred CCCHHHHHHHHHHhCCEEEeCchhhCCC-----------------CCCEEEEEecC--CHHHHHHHHHHHHH
Confidence 234555443 69999999876432 13799999984 67899999999986
|
|
| >cd00609 AAT_like Aspartate aminotransferase family | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-19 Score=235.10 Aligned_cols=289 Identities=20% Similarity=0.209 Sum_probs=215.7
Q ss_pred HHHHHHHHHHHHhCCC------CCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEE
Q psy15216 42 AIEKARNEVAQLIYAD------PREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTY 115 (2602)
Q Consensus 42 ~~~~~r~~lA~~~g~~------~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~ 115 (2602)
...++++.++++++.. ++++++++|+|+++..++.++. ++||+|+++.+.|+++...++.. |.+++.
T Consensus 37 ~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~~----~~g~~vl~~~~~~~~~~~~~~~~---~~~~~~ 109 (350)
T cd00609 37 GLPELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLLRALL----NPGDEVLVPDPTYPGYEAAARLA---GAEVVP 109 (350)
T ss_pred CcHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHhC----CCCCEEEEcCCCchhHHHHHHHC---CCEEEE
Confidence 4556677777777653 6689999999999999999997 78999999999999988877665 899999
Q ss_pred eccCCCCccCh--HHHHhhccCCceEEEEecccCcccccccHHHHH---HHHHhcCCEEEEeccccccccc-------cc
Q psy15216 116 LKPKNNGLITL--SQLEEKICSDTILVSVMLVNNEIGVIQPILEIG---ELCRSKGVIFHCDAAQAVGKID-------IN 183 (2602)
Q Consensus 116 v~~~~~~~ld~--e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~---~la~~~g~~livD~a~a~g~~~-------~d 183 (2602)
++.++++..+. +.++..+.+++++|++++++||||.++|++++. ++|+++|+++|+|++|+.+... ..
T Consensus 110 i~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~tG~~~~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~~ 189 (350)
T cd00609 110 VPLDEEGGFLLDLELLEAAKTPKTKLLYLNNPNNPTGAVLSEEELEELAELAKKHGILIISDEAYAELVYDGEPPPALAL 189 (350)
T ss_pred EecccccCCccCHHHHHhhcCccceEEEEECCCCCCCcccCHHHHHHHHHHHHhCCeEEEEecchhhceeCCcccccccC
Confidence 99887776665 778888888999999999999999999966655 8999999999999998764321 22
Q ss_pred CCCCCccEEEeccccccCCC--CcEEEEEec-CCCCcccceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHH
Q psy15216 184 IQNYKVDLMSFSAHKIYGPK--GIGALYIRR-NPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELK 260 (2602)
Q Consensus 184 l~~~~~D~~~~S~~K~~Gp~--G~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~ 260 (2602)
....+.|+++.|+||+++.+ ++|++++++ ++.+.+.... .+..++++.....++..+++....++++..+
T Consensus 190 ~~~~~~~~~~~s~~K~~~~~g~~~G~i~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 262 (350)
T cd00609 190 LDAYERVIVLRSFSKTFGLPGLRIGYLIAPPEELLERLKKLL-------PYTTSGPSTLSQAAAAAALDDGEEHLEELRE 262 (350)
T ss_pred cCccCcEEEEeecccccCCcccceEEEecCHHHHHHHHHHHH-------HhcccCCChHHHHHHHHHHhCcHHHHHHHHH
Confidence 34456789999999977643 489999988 5666665332 1224567778888887888754366788899
Q ss_pred HHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEccc-ChhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCC
Q psy15216 261 RILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI-EGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGC 337 (2602)
Q Consensus 261 ~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~ 337 (2602)
++.++++++.+.|.+ .+...+..+ .......+.++.. ....+.+.| ++|.++++..+..
T Consensus 263 ~~~~~~~~l~~~L~~-~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~l~~~gi~i~~~~~~~~-------------- 324 (350)
T cd00609 263 RYRRRRDALLEALKE-LGPLVVVKP---SGGFFLWLDLPEGDDEEFLERLLLEAGVVVRPGSAFGE-------------- 324 (350)
T ss_pred HHHHHHHHHHHHHHh-cCCccccCC---CccEEEEEecCCCChHHHHHHHHHhCCEEEeccccccc--------------
Confidence 999999999999987 444332111 1123333333433 233344444 5899987765531
Q ss_pred CccCCCCeEEEecCCCCCHHHHHHHHHHHH
Q psy15216 338 NDELAHSSIRFTIGRFTTEKEIDFTIKLLK 367 (2602)
Q Consensus 338 ~~~~~~~~iRis~~~~~t~edid~li~~L~ 367 (2602)
....++|++++.+ .+|+++++++|+
T Consensus 325 ---~~~~~iRi~~~~~--~~~i~~~~~al~ 349 (350)
T cd00609 325 ---GGEGFVRLSFATP--EEELEEALERLA 349 (350)
T ss_pred ---CCCCeEEEEeeCC--HHHHHHHHHHhh
Confidence 1237899999976 999999999987
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi |
| >KOG0259|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.2e-19 Score=207.66 Aligned_cols=319 Identities=16% Similarity=0.165 Sum_probs=231.4
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCC------CCCcEEEeCCHHHHHHHHHHhcccc
Q psy15216 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA------DPREIIWTSGATESNNLAIKGAAHF 81 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~------~~~~Iv~t~g~T~al~~~~~~l~~~ 81 (2602)
++++.+.+|+.+++++.-+| +|.+......+|+++|++++- ++++|++|+|.++||.+++.++.
T Consensus 78 ~ts~~a~~Av~~al~Sgk~N--------~Yaps~G~~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC~qAIe~~i~~LA-- 147 (447)
T KOG0259|consen 78 RTSQEAEQAVVDALRSGKGN--------GYAPSVGILPARRAVAEYLNRDLPNKLTADDVVLTSGCSQAIELAISSLA-- 147 (447)
T ss_pred cCCHHHHHHHHHHHhcCCCC--------CcCCccccHHHHHHHHHHhhcCCCCccCcCceEEeccchHHHHHHHHHhc--
Confidence 78889999999999863322 233344567889999999643 56789999999999999999999
Q ss_pred cccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccC--CCCccChHHHHhhccCCceEEEEecccCccccccc---HH
Q psy15216 82 YKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK--NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---IL 156 (2602)
Q Consensus 82 ~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~--~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~---l~ 156 (2602)
+||-+|++|.|.||-|...+... |++++.+++- .++.+|++.++++++++|.++++.||+||+|.+++ ++
T Consensus 148 --~p~aNILlPrPGfp~Y~~~a~~~---~lEVR~ydlLPe~~weIDL~~veal~DENT~AivviNP~NPcGnVys~~HL~ 222 (447)
T KOG0259|consen 148 --NPGANILLPRPGFPLYDTRAIYS---GLEVRYYDLLPEKDWEIDLDGVEALADENTVAIVVINPNNPCGNVYSEDHLK 222 (447)
T ss_pred --CCCCceecCCCCCchHHHhhhhc---CceeEeecccCcccceechHHHHHhhccCeeEEEEeCCCCCCcccccHHHHH
Confidence 89999999999999987766655 9999999864 47899999999999999999999999999999998 88
Q ss_pred HHHHHHHhcCCEEEEecccc---cccccc-cCCC---CCccEEEecccc-ccCCCC--cEEEEEecCCCCccccee--cC
Q psy15216 157 EIGELCRSKGVIFHCDAAQA---VGKIDI-NIQN---YKVDLMSFSAHK-IYGPKG--IGALYIRRNPRTRIEAQI--HG 224 (2602)
Q Consensus 157 ~I~~la~~~g~~livD~a~a---~g~~~~-dl~~---~~~D~~~~S~~K-~~Gp~G--~G~l~~~~~~~~~l~~~~--~g 224 (2602)
+|+++|+++++++|.|+.|. +|.-|+ .+.. .-+-+.+.|.+| |.- +| +||+...+. ...++... .+
T Consensus 223 kiae~A~klgi~vIaDEVY~~~vfg~~pfvpmg~fssiVPVitlggisKrW~V-PGWRlGWi~~hD~-~gvf~~~~~~q~ 300 (447)
T KOG0259|consen 223 KIAETAKKLGIMVIADEVYGHTVFGDKPFVPMGKFSSIVPVITLGGISKRWIV-PGWRLGWIALHDP-RGVFRDTKVVQG 300 (447)
T ss_pred HHHHHHHHhCCeEEehhhcceeecCCCCccchhhccccCceEeeccccccccc-CCceeeeEEEecc-cccccchHHHHH
Confidence 99999999999999999974 233222 2222 224566779999 543 34 999998753 11111100 00
Q ss_pred CCccccc--cccCcchhHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEE---
Q psy15216 225 GGHEYGL--RSGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISF--- 298 (2602)
Q Consensus 225 ~~~~~~~--~~gt~~~~~~~al~~al~-~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~--- 298 (2602)
- ..+ ....|+..-..|+-.-|+ .-++.++....-.+.+++.-+++|++ +|++..+-.|+......+.+.+
T Consensus 301 ~---~~~~~~~~~p~TiiQ~AlP~IL~kTp~efF~k~~~~lk~na~l~y~~Lk~-IP~l~cp~kPeg~mylmv~l~~s~~ 376 (447)
T KOG0259|consen 301 I---KNFLDIIPGPATIIQGALPDILEKTPEEFFDKKLSFLKSNADLCYSRLKD-IPCLTCPVKPEGCMYLMVKLNLSLF 376 (447)
T ss_pred H---HHHHhccCCccHhHHHHhHHHHHhChHHHHHHHHHHHHhhHHHHHHHHhc-CCCcccCcCCCcceEEEeccchhhh
Confidence 0 000 122344444444544444 23456888899999999999999988 8998854433332211111111
Q ss_pred cc-cChhHHHHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 299 NF-IEGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 299 ~~-~~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
+. .+..++...| +.+.+-||.++..+ +|+|++++. ..+.++.++++|++
T Consensus 377 ~~~~dD~dFc~kL~~Eesv~~LPG~af~~~-------------------nw~Ri~i~~--~~~~leea~~Rik~ 429 (447)
T KOG0259|consen 377 PDIEDDVDFCQKLAREESVICLPGQAFGLK-------------------NWLRIVITV--EEEMLEEAFSRIKE 429 (447)
T ss_pred ccccccHHHHHHHhhhcceEEeccccccCC-------------------CeEEEEEcc--ChHHHHHHHHHHHH
Confidence 11 3445677777 68888899887654 999999984 66889999999985
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.9e-19 Score=242.47 Aligned_cols=313 Identities=12% Similarity=0.063 Sum_probs=221.5
Q ss_pred CCCCC-CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCC---cEEEeCCHHHHHHHHHHhc
Q psy15216 3 YSATT-PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPR---EIIWTSGATESNNLAIKGA 78 (2602)
Q Consensus 3 ~a~~~-~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~---~Iv~t~g~T~al~~~~~~l 78 (2602)
.+... ++|+.+.+++.+.+.... . . .+ ..+..+.+++++++.+|++.+ +|++++|+++++..++.++
T Consensus 704 inE~d~ppPp~V~eAi~eal~~~~--~-s----~g--~pdlr~aLa~~la~~~Gv~~d~~e~IIvt~Gs~elL~lll~aL 774 (1082)
T PLN02672 704 VDESFLPVPSAVKASIFESFVRQN--I-S----ES--ETDPRPSILQFIKSNYGFPTDSCTEFVYGDTSLALFNKLVLCC 774 (1082)
T ss_pred CCCCCCCCCHHHHHHHHHHHhhcC--C-C----CC--ChHHHHHHHHHHHHHhCcCCCCCCEEEEeCCHHHHHHHHHHHH
Confidence 33334 788999999988775421 1 0 11 123468899999999998554 7999999999999999998
Q ss_pred ccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCC--CCccChHHHHhhccC-CceEEEEeccc-Cccccccc
Q psy15216 79 AHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICS-DTILVSVMLVN-NEIGVIQP 154 (2602)
Q Consensus 79 ~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~ld~e~l~~~i~~-~tklv~i~~~~-npTG~~~~ 154 (2602)
. +|||.|+++.|.|+.+...++.+ |++++.+++++ ++.+|++.+++++++ +++++++++|+ ||||.+++
T Consensus 775 l----~pGD~VLVp~PtY~~Y~~~a~~~---Ga~vv~Vpl~~e~gf~lD~d~Le~al~~~~~~~I~L~nPnhNPTG~v~S 847 (1082)
T PLN02672 775 V----QEGGTLCFPAGSNGTYVSAAKFL---KANFRRIPTKSSDGFKLTAKTLASTLETVKKPWVYISGPTINPTGLLYS 847 (1082)
T ss_pred c----CCCCEEEEeCCChHHHHHHHHHc---CCEEEEEecccccCCCCCHHHHHHHhccCCCCEEEEECcCCCCcCccCC
Confidence 8 89999999999999998888776 99999999864 567899999999976 45689999997 99999998
Q ss_pred ---HHHHHHHHHhcCCEEEEecccccccc---c---ccCC----CC------CccEEEeccccccCCCC--cEEEEEecC
Q psy15216 155 ---ILEIGELCRSKGVIFHCDAAQAVGKI---D---INIQ----NY------KVDLMSFSAHKIYGPKG--IGALYIRRN 213 (2602)
Q Consensus 155 ---l~~I~~la~~~g~~livD~a~a~g~~---~---~dl~----~~------~~D~~~~S~~K~~Gp~G--~G~l~~~~~ 213 (2602)
+++|+++|++||++||+|++|+.-.. + .++. .. ..-+++.|+||.++++| +||++++++
T Consensus 848 ~eeLe~Llela~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~~~~~~sks~nVIvL~SfSKkf~lpGLRIGylIap~~ 927 (1082)
T PLN02672 848 NSEIEEILSVCAKYGARVIIDTSFSGLEYDTSGWGGWDLKSILSRLKSSNPSFAVALLGGLSTELLSGGHEFGFLALNDS 927 (1082)
T ss_pred HHHHHHHHHHHHHcCCEEEEeCCCCccccCCCCCcccchhhHHHHhccccCCceEEEEeCcHHhhccHHHHheeEEeCCH
Confidence 55677788999999999999862111 1 0111 11 12367779999888888 899999754
Q ss_pred -CCCcccceecCCCccccccccCcchhHHHHHHHHHHHH-------HHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCC
Q psy15216 214 -PRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLA-------RIEMKEELKRILFLQKRLYNGLMESIEEIYINGD 285 (2602)
Q Consensus 214 -~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~-------~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~ 285 (2602)
+++.+..... ...+......++.+++... ...+.+.++.+++.++++.+.|.+ .++.+..+
T Consensus 928 eLi~~l~~~~~---------~s~~~~~~q~Aaaaalall~~~~~~~~~~l~e~r~~Lk~rRd~L~e~L~~--~Gi~v~~P 996 (1082)
T PLN02672 928 VLIDAFHSAPG---------LSRPHSTLKYTIKKLLGLKNQKSSDLLDGVAEQKKILKSRAERLKETLEA--CGWDVLEP 996 (1082)
T ss_pred HHHHHHHHhhh---------hcCCCcHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCeEecC
Confidence 6666643210 1112222233333333211 234567777789999999999987 36666544
Q ss_pred CCCCCCceEEEEEc--------------------ccChhHHHHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCC
Q psy15216 286 MNNRIPHNLNISFN--------------------FIEGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELA 342 (2602)
Q Consensus 286 ~~~~~~~~~~~~~~--------------------~~~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~ 342 (2602)
.. ++.++.. ..+..++...| .||.+.+|..+..
T Consensus 997 eG-----GFfLwl~l~~~l~~~~~~~~~~~~~~~~lds~efae~LLee~GVaV~PGs~FG~------------------- 1052 (1082)
T PLN02672 997 QG-----GISMVAKPSAYLGKTVKLKSIDGDTGIKLDSSNIREAILKSTGLCINSSSWTGI------------------- 1052 (1082)
T ss_pred Cc-----EEEEEEEccccccccccccccccccccCCCHHHHHHHHHHcCCEEEecCcccCC-------------------
Confidence 32 2222221 12445666666 4899999865432
Q ss_pred CCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 343 HSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 343 ~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
.+++||+++. +++++++++++|++
T Consensus 1053 ~g~~RIsfa~--~~e~LeeALerL~k 1076 (1082)
T PLN02672 1053 PGYCRFSFAL--EDSEFDRALKAIAR 1076 (1082)
T ss_pred CCeEEEEecC--CHHHHHHHHHHHHH
Confidence 2899999984 78899999999986
|
|
| >PRK08064 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.3e-20 Score=236.25 Aligned_cols=307 Identities=14% Similarity=0.143 Sum_probs=205.0
Q ss_pred cchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHH-HHHhCCc
Q psy15216 33 HIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIR-KLENDGF 111 (2602)
Q Consensus 33 ~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~-~~~~~G~ 111 (2602)
+.+++...+..+++++.+|+++|++ ..+++ ++++.|+.+++. +. ++||+|+++++.|++....+. .+++.|+
T Consensus 46 ~~y~r~~~p~~~~le~~lA~l~g~~-~~v~~-~sG~~ai~~~l~-~l----~~Gd~Vlv~~~~y~~~~~~~~~~~~~~G~ 118 (390)
T PRK08064 46 YDYSRSGNPTREALEDIIAELEGGT-KGFAF-ASGMAAISTAFL-LL----SKGDHVLISEDVYGGTYRMITEVLSRFGI 118 (390)
T ss_pred CcccCCCChhHHHHHHHHHHHhCCC-CeEEE-CCHHHHHHHHHH-Hh----CCCCEEEEccCccchHHHHHHHHHHHcCC
Confidence 4456666678899999999999987 45555 555778887775 33 699999999999997766664 4467799
Q ss_pred EEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHhcCCEEEEecccccccccccCCCCCccE
Q psy15216 112 RVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDL 191 (2602)
Q Consensus 112 ~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~~g~~livD~a~a~g~~~~dl~~~~~D~ 191 (2602)
++++++.. |+++++++++++|++|++++|+||||.+.|+++|.++||++|+++++|++++.+.....+ ++++|+
T Consensus 119 ~v~~v~~~-----d~~~l~~~l~~~tklV~l~~p~NptG~~~dl~~I~~la~~~g~~vvvD~a~~~~~~~~~~-~~g~Di 192 (390)
T PRK08064 119 EHTFVDMT-----NLEEVAQNIKPNTKLFYVETPSNPLLKVTDIRGVVKLAKAIGCLTFVDNTFLTPLLQKPL-DLGADV 192 (390)
T ss_pred EEEEECCC-----CHHHHHHhcCCCceEEEEECCCCCCcEeccHHHHHHHHHHcCCEEEEECCCCcccccCch-hhCCcE
Confidence 99999863 789999999999999999999999999999999999999999999999999877543333 468899
Q ss_pred EEecccccc-CCCC--cEEEEEec-CCCCcccceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy15216 192 MSFSAHKIY-GPKG--IGALYIRR-NPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQK 267 (2602)
Q Consensus 192 ~~~S~~K~~-Gp~G--~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~ 267 (2602)
++.|+||++ |+.| .|++++++ ++.+.+++...+++ ...+....+.+...++ .+..+.++..+.+.
T Consensus 193 vv~S~tK~~~G~~~~laG~~v~~~~~~~~~l~~~~~~~g-------~~~~~~~a~l~~~gl~----tl~~R~~~~~~~a~ 261 (390)
T PRK08064 193 VLHSATKFLAGHSDVLAGLAVVKDEELAQKLYFLQNSFG-------AVLGVQDCWLVLRGLK----TLHVRLEHSSETAN 261 (390)
T ss_pred EEeecceeccCCccceeEEEEeCCHHHHHHHHHHHHhcC-------CCCCHHHHHHHHcccC----cHHHHHHHHHHHHH
Confidence 999999965 5666 58888764 55566655442211 1111111111212222 23455555666666
Q ss_pred HHHHHHhhccCceE-EeCC--CC-----------CCCCceEEEEEccc-ChhHHHHHh--CCeEEcccccCCC-------
Q psy15216 268 RLYNGLMESIEEIY-INGD--MN-----------NRIPHNLNISFNFI-EGESLLMAI--KDIAVSSGSACTS------- 323 (2602)
Q Consensus 268 ~l~~~L~~~~~g~~-l~~~--~~-----------~~~~~~~~~~~~~~-~~~~~~~~L--~gI~v~~g~~~~~------- 323 (2602)
.+.+.|++ .|.+. ++-| ++ .....++.|.+.+. +...+++.+ ..+.++.|...+-
T Consensus 262 ~la~~L~~-~~~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~sf~~~~~~~~~~f~~~l~l~~~~~s~G~~~sl~~~~~~~ 340 (390)
T PRK08064 262 KIALYLQE-HPKVQNVYYPGLQTHLGFDIQQSQATSAGAVLSFTLQSEEAVRQFVSHVKLPVFAVSLGAVESILSYPAKM 340 (390)
T ss_pred HHHHHHhc-CCCcceEECCCCCCCccHHHHHHhCCCcceEEEEEECCHHHHHHHHHhCCcceEcccCCCCcceeECCccc
Confidence 77777765 34332 2111 10 01122344444321 223455555 3446666632210
Q ss_pred CC-CChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 324 AS-LEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 324 ~~-~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
.| ..+.......|+. ++.||+|+|.+++++.++.+.++|++
T Consensus 341 ~h~~~~~~~~~~~gi~----~~liR~SvGle~~~dli~dl~~Al~~ 382 (390)
T PRK08064 341 SHAAMPKEERDERGIT----DGLLRLSVGLENVDDLIADFEQALSY 382 (390)
T ss_pred ccccCCHHHHHhcCCC----CCeEEEEeccCCHHHHHHHHHHHHHh
Confidence 00 1112223345664 38899999999999999999999985
|
|
| >PRK07392 threonine-phosphate decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.5e-19 Score=229.64 Aligned_cols=307 Identities=15% Similarity=0.074 Sum_probs=218.7
Q ss_pred CCCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhcc
Q psy15216 1401 ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKK 1480 (2602)
Q Consensus 1401 ~~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~ 1480 (2602)
+..++++.+.+++.+.+.....+|.. ...++|+.+++++++++++|++|+|+++++.+++.++.
T Consensus 32 n~~~~~~~~~~a~~~~~~~~~~Y~~~-----------~~~~Lr~aia~~~~v~~~~I~it~G~~~~i~~~~~~l~----- 95 (360)
T PRK07392 32 NPLGPPESVIAAIQSALSALRHYPDP-----------DYRELRLALAQHHQLPPEWILPGNGAAELLTWAGRELA----- 95 (360)
T ss_pred CCCCCCHHHHHHHHHHHHHhhcCCCc-----------CHHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHHHhC-----
Confidence 33567788999988877654334432 13578999999999999999999999999999988754
Q ss_pred CCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCC-----cChhHHHhhccCCceEEEEeccccccccccChHHHH
Q psy15216 1481 RGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGL-----ITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIG 1555 (2602)
Q Consensus 1481 ~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~-----id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~ 1555 (2602)
+||.|++++|.|+.+...++.+ |++++.++.+.++. .+++++++.. ++++++++++||||||.+++.++|.
T Consensus 96 ~g~~vlv~~P~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~nP~NPTG~~~~~~~l~ 171 (360)
T PRK07392 96 QLRAVYLITPAFGDYRRALRAF---GATVKELPLPLDQPSPGLTLRLQTLPPQL-TPNDGLLLNNPHNPTGKLWSREAIL 171 (360)
T ss_pred CCCeEEEECCCcHHHHHHHHHc---CCeEEEEecccccCCcccccCHHHHHHhc-cCCCEEEEeCCCCCCCCCcCHHHHH
Confidence 6889999999999988777665 99999999875432 4667776654 5789999999999999999999999
Q ss_pred HHhhhcCCEEEEecccccCcc---c---cc-CCCCCccEEEEccccccCCCc--eEEEEEecCCCCccccccccCCcccc
Q psy15216 1556 ELCRSKGVIFHCDAAQAVGKI---D---IN-IQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYG 1626 (2602)
Q Consensus 1556 ~ia~~~gi~vivD~a~~~g~~---~---~~-l~~~~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~ 1626 (2602)
++++++++ +|+|+++..-.. + .. +.....-+++.||+|.+|++| +||+++++++++.+....
T Consensus 172 ~l~~~~~~-~IiDE~y~~~~~~~~~~s~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~~v~~~~~~~~~~~~~-------- 242 (360)
T PRK07392 172 PLLEQFAL-VVVDEAFMDFLPPDAEQSLIPCLAEYPNLIILRSLTKFYSLPGLRLGYAIAHPDRLQRWQQWR-------- 242 (360)
T ss_pred HHHHHCCE-EEEECchhhhccCccccchHHHhhcCCCEEEEEechhhhcCCchheeeeeCCHHHHHHHHhhC--------
Confidence 99999985 666999753211 1 11 112223477889999888888 899999877666553221
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecCCcHHHHHhc
Q psy15216 1627 LRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI 1706 (2602)
Q Consensus 1627 ~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~L 1706 (2602)
..++.+...+.++..+|+. ....+...+++++.++++.+.|.. ++++.+.. .. .....+.++ .+..++...+
T Consensus 243 -~~~~~s~~~q~~~~~~l~~-~~~~~~~~~~~~~~r~~l~~~L~~-~~~~~~~~--~~--~~fl~~~~~-~~~~~l~~~l 314 (360)
T PRK07392 243 -DPWPVNGLAAAAAIAALAD-RDFQQQTWAWLPPAREALFQGLAS-LPGLTPLP--SA--ANFLLVQSQ-GSALQLQEKL 314 (360)
T ss_pred -CCCCCCHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHh-CCCcEECC--CC--CCEEEEEcC-CCHHHHHHHH
Confidence 1234566666666666652 223445556777888889999976 67776642 11 112222222 2445666553
Q ss_pred ---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1707 ---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1707 ---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
+||.+++|..|... ..+++||+++ +.++.+++.++|++
T Consensus 315 l~~~gv~v~pg~~f~~~-----------------~~~~iRi~~~---~~~~~~~l~~al~~ 355 (360)
T PRK07392 315 LQQHRILIRDCLSFPEL-----------------GDRYFRVAVR---TEAENQRLLEALAA 355 (360)
T ss_pred HhhCCEEEEeCCCCCCC-----------------CCCEEEEEeC---CHHHHHHHHHHHHH
Confidence 69999999877431 1379999998 56677788888875
|
|
| >PRK06855 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.5e-19 Score=237.29 Aligned_cols=319 Identities=15% Similarity=0.167 Sum_probs=213.0
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHh----C--CCCCcEEEeCCHHHHHHHHHHhcccc
Q psy15216 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI----Y--ADPREIIWTSGATESNNLAIKGAAHF 81 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~----g--~~~~~Iv~t~g~T~al~~~~~~l~~~ 81 (2602)
++|+.+.+++.+.+... .. .+|.......++|+++++++ | +++++|++|+|+++|+.+++. +.
T Consensus 48 ~~p~~~~~a~~~~~~~~----~~----~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~I~it~G~~~al~~~~~-l~-- 116 (433)
T PRK06855 48 KIPDWMKEIVAELVMDD----KS----YGYCPTKGVLETREFLAELNNKRGGAQITPDDIIFFNGLGDAIAKIYG-LL-- 116 (433)
T ss_pred CCCHHHHHHHHHHhhcC----CC----CCCCCCCCCHHHHHHHHHHHHhccCCCCCHhHEEEcCcHHHHHHHHHH-hc--
Confidence 56777888888776431 10 11111123456667777665 4 477899999999999999875 55
Q ss_pred cccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCC--CCccChHHHHhhcc--CCceEEEEecccCcccccccH--
Q psy15216 82 YKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKIC--SDTILVSVMLVNNEIGVIQPI-- 155 (2602)
Q Consensus 82 ~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~ld~e~l~~~i~--~~tklv~i~~~~npTG~~~~l-- 155 (2602)
.+||.|++++|.|+.+..... ...|++++.+++++ ++.+|+++|+++++ ++++++++++|+||||.+++.
T Consensus 117 --~~Gd~Vlv~~P~Y~~~~~~~~--~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~~~~~~i~l~~P~NPTG~~~s~~~ 192 (433)
T PRK06855 117 --RREARVIGPSPAYSTHSSAEA--AHAGYPPVTYRLDPENNWYPDLDDLENKVKYNPSIAGILLINPDNPTGAVYPKEI 192 (433)
T ss_pred --CCCCeEEEeCCCCchHHHHHH--HhcCCeEEEEecccccCCCCCHHHHHHHHhcCCCceEEEEECCCCCCCcCCCHHH
Confidence 799999999999998653322 12378888888764 35689999999996 468999999999999999994
Q ss_pred -HHHHHHHHhcCCEEEEeccccccc----ccccC---CCCCccEEEeccccccCCCC--cEEEEEecCC-----CCcccc
Q psy15216 156 -LEIGELCRSKGVIFHCDAAQAVGK----IDINI---QNYKVDLMSFSAHKIYGPKG--IGALYIRRNP-----RTRIEA 220 (2602)
Q Consensus 156 -~~I~~la~~~g~~livD~a~a~g~----~~~dl---~~~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~-----~~~l~~ 220 (2602)
++|+++|++||++||+|++|+.-. .+..+ ......+++.|+||.++++| +||+++++.. ...+..
T Consensus 193 ~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~sl~~~~~~~~~I~~~S~SK~~~~pGlRiG~ii~p~~~~~~~~~~~~~~ 272 (433)
T PRK06855 193 LREIVDIAREYDLFIICDEIYNNIVYNGKKTVPLSEVIGDVPGIALKGISKELPWPGSRCGWIEVYNADKDEVFKKYINS 272 (433)
T ss_pred HHHHHHHHHHcCCEEEEeccccccccCCCCCCCHHHHcCcCCeEEEecCccccCCCcceEEEEEEeCCchhhHHHHHHHH
Confidence 567778899999999999985321 11111 11123488899999988888 8999985311 111111
Q ss_pred eecCCCccccccccCcchhHHHHHHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEE
Q psy15216 221 QIHGGGHEYGLRSGTLATHQIVGMGEAFRL--ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISF 298 (2602)
Q Consensus 221 ~~~g~~~~~~~~~gt~~~~~~~al~~al~~--~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~ 298 (2602)
.... ... ...++.+...++..+++. ...++++.+.+++++++.+.+.|.+ ++++.+..|... ...++.+
T Consensus 273 ~~~~----~~~-~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~L~~-~~~~~~~~p~gg---~~~w~~l 343 (433)
T PRK06855 273 ILNA----KMI-EVCSTTLPQMAIPRIMSHPEYKNYLKERNKRYEKRSNIAYEKLKD-VPGLKVNRTNGA---FYMTVVF 343 (433)
T ss_pred HHHh----hcc-ccCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeeccCCCee---EEEeecc
Confidence 1000 001 123445555666666652 2456778888889999999999976 567655433221 2233333
Q ss_pred ccc----------------------------ChhHHHHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEE
Q psy15216 299 NFI----------------------------EGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIR 347 (2602)
Q Consensus 299 ~~~----------------------------~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iR 347 (2602)
+.. ++.+++..+ .||.+.||..|.+. ...+|
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~PG~~F~~~------------------~~~~R 405 (433)
T PRK06855 344 EDGVLNNKQSLPIENPEVKEYVEGLVKGPVSPDKRFVYYLLASTGICVVPLSSFCTE------------------LNGFR 405 (433)
T ss_pred ccccccccccCCcchhhhHHHHHHHHhcCCCchHHHHHHHHHHcCEEEecCCcCCCC------------------CCceE
Confidence 321 233444443 69999999877432 14599
Q ss_pred EecCCCCCHHHHHHHHHHHHhh
Q psy15216 348 FTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 348 is~~~~~t~edid~li~~L~~~ 369 (2602)
|+++. .+.++++..+++|.+.
T Consensus 406 ls~~~-~~~~~i~~~~~~l~~~ 426 (433)
T PRK06855 406 VTLLE-RDEEKFEWIYQTLAEK 426 (433)
T ss_pred EEECC-CcHHHHHHHHHHHHHH
Confidence 99986 4689999999999864
|
|
| >TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-19 Score=234.83 Aligned_cols=336 Identities=16% Similarity=0.147 Sum_probs=229.3
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCC
Q psy15216 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK 87 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd 87 (2602)
..+...++++.+.+...+... + +..+++|+.+++++|.+ +.++++|+|+|+++++.++. +++||
T Consensus 7 ~~~~~~~~~v~~~~~~~~~~~-------g----~~~~~le~~la~~~g~~--~~v~~~sgt~al~~~l~al~---~~~Gd 70 (380)
T TIGR03588 7 SIDQDDIDAVVEVLKSDFLTQ-------G----PTVPAFEEALAEYVGAK--YAVAFNSATSALHIACLALG---VGPGD 70 (380)
T ss_pred CCCHHHHHHHHHHHhcCCccC-------C----hhHHHHHHHHHHHHCCC--eEEEEcCHHHHHHHHHHHcC---CCCCC
Confidence 455667888888776522111 1 24678999999999985 45667789999999999984 37999
Q ss_pred EEEEcCCCCcccHHHHHHHHhCCcEEEEeccCC-CCccChHHHHhhcc----CCceEEEEecccCcccccccHHHHHHHH
Q psy15216 88 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NGLITLSQLEEKIC----SDTILVSVMLVNNEIGVIQPILEIGELC 162 (2602)
Q Consensus 88 ~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~-~~~ld~e~l~~~i~----~~tklv~i~~~~npTG~~~~l~~I~~la 162 (2602)
+|++++++|+++..++... |++++++++++ ++.+|+++++++++ ++|++|+++| ++|...|+++|.++|
T Consensus 71 ~Viv~~~~~~~~~~~~~~~---G~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~t~~v~~~~---~~G~~~~~~~i~~l~ 144 (380)
T TIGR03588 71 RVWTTPITFVATANCALYC---GAKVDFVDIDPDTGNIDEDALEKKLAAAKGKLPKAIVPVD---FAGKSVDMQAIAALA 144 (380)
T ss_pred EEEeCCcchHHHHHHHHHc---CCEEEEEecCCCcCCcCHHHHHHHhhcccCCCceEEEEeC---CCCccCCHHHHHHHH
Confidence 9999999999987666544 99999999865 67799999999998 7899988765 489999999999999
Q ss_pred HhcCCEEEEecccccccccccCCCCCc----cEEEeccc--cccCCCCcEEEEEe-cCCCCcccceecCCCcc-------
Q psy15216 163 RSKGVIFHCDAAQAVGKIDINIQNYKV----DLMSFSAH--KIYGPKGIGALYIR-RNPRTRIEAQIHGGGHE------- 228 (2602)
Q Consensus 163 ~~~g~~livD~a~a~g~~~~dl~~~~~----D~~~~S~~--K~~Gp~G~G~l~~~-~~~~~~l~~~~~g~~~~------- 228 (2602)
++||+++|+|++|++|.. ++....+. |+.++|+| |+++....|+++.+ +++.+++++...++...
T Consensus 145 ~~~~~~lI~D~a~a~g~~-~~~~~~g~~~~~d~~~~S~~~~K~~~~~~GG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 223 (380)
T TIGR03588 145 KKHGLKIIEDASHALGAE-YGGKPVGNCRYADATVFSFHPVKIITTAEGGAVTTNDEELAERMRLLRSHGITKDPLLFEK 223 (380)
T ss_pred HHcCCEEEEECCCcccCc-cCCEeCCCccccceEEEecCCCCcccccCceEEEECCHHHHHHHHHHHHCCCCCCcccccc
Confidence 999999999999999875 45555555 99999998 76653334555554 54555554432222110
Q ss_pred -----ccccccCcch-hHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCC--CCCceEEEEEc
Q psy15216 229 -----YGLRSGTLAT-HQIVGMGEAFRL-ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNN--RIPHNLNISFN 299 (2602)
Q Consensus 229 -----~~~~~gt~~~-~~~~al~~al~~-~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~--~~~~~~~~~~~ 299 (2602)
+.+..+.+.+ ..+..+.+++.. ....++++.++.+++++++.+.|.+ ++++.++.++.. ..+....+.++
T Consensus 224 ~~~~~~~~~~~~~g~n~~m~~l~aa~g~~qL~~l~~~~~~r~~~~~~~~~~L~~-~~~~~~~~~~~~~~~~~~~~~i~~~ 302 (380)
T TIGR03588 224 QDEGPWYYEQQELGFNYRMTDIQAALGLSQLKKLDRFVAKRREIAARYDRLLKD-LPYFTPLTIPLGSKSAWHLYPILLD 302 (380)
T ss_pred cccCcceeeeeccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCccCCCCCCCCEeEEEEEEEEEC
Confidence 1111111111 011112223321 1134688899999999999999987 677765543211 12344444554
Q ss_pred c---cChhHHHHHh--CCeEEcccccCCCCCCChHHHH--H--HcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 300 F---IEGESLLMAI--KDIAVSSGSACTSASLEPSYVL--R--ALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 300 ~---~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~--~--~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
. .+.+++.+.| +||.++.. |.+.+.+|.+.. . .+...+....+.|+++++.+.|++|+++++++|++.
T Consensus 303 ~~~~~~r~~l~~~L~~~gI~~~~~--~~~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l~~~dv~~i~~~l~~~ 379 (380)
T TIGR03588 303 QEFGCTRKEVFEALRAAGIGVQVH--YIPVHLQPYYRQGFGDGDLPSAENFYLAEISLPLHPALTLEQQQRVVETLRKV 379 (380)
T ss_pred CcCCCCHHHHHHHHHHCCCCcccC--CcccccChhhhccCCcCCCcHHHHHHhceEEcCCCCCCCHHHHHHHHHHHHHh
Confidence 2 3567888877 78888744 334344443321 0 011222334478999999999999999999999863
|
This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species. |
| >PRK06836 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.9e-19 Score=231.74 Aligned_cols=316 Identities=14% Similarity=0.119 Sum_probs=212.8
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhC------CCCCcEEEeCCHHHHHHHHHHhcccc
Q psy15216 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIY------ADPREIIWTSGATESNNLAIKGAAHF 81 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g------~~~~~Iv~t~g~T~al~~~~~~l~~~ 81 (2602)
++|+.+.+++.+++.....+.. .| .......++|+.++++++ +++++|++|+|+++++++++.++.
T Consensus 46 ~~~~~v~~a~~~~~~~~~~~~~--~y----~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~-- 117 (394)
T PRK06836 46 PPPAAVKEALRELAEEEDPGLH--GY----MPNAGYPEVREAIAESLNRRFGTPLTADHIVMTCGAAGALNVALKAIL-- 117 (394)
T ss_pred CCCHHHHHHHHHHHhcCCcCcc--cC----CCCCCCHHHHHHHHHHHHHHhCCCCCcCcEEEeCChHHHHHHHHHHhc--
Confidence 4677888888877653211111 11 111235567777777763 478899999999999999999987
Q ss_pred cccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCC-CccChHHHHhhccCCceEEEEecccCccccccc---HHH
Q psy15216 82 YKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN-GLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILE 157 (2602)
Q Consensus 82 ~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~-~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~---l~~ 157 (2602)
++||.|++++|.|+.+...++ ..|++++.++.+++ +.+|+++++++++++++++++++|+||||.++| +++
T Consensus 118 --~~gd~Vli~~p~~~~~~~~~~---~~g~~v~~v~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~NPtG~~~~~~~~~~ 192 (394)
T PRK06836 118 --NPGDEVIVFAPYFVEYRFYVD---NHGGKLVVVPTDTDTFQPDLDALEAAITPKTKAVIINSPNNPTGVVYSEETLKA 192 (394)
T ss_pred --CCCCEEEEcCCCCccHHHHHH---HcCCEEEEEecCCccCcCCHHHHHhhcCcCceEEEEeCCCCCCCcCCCHHHHHH
Confidence 799999999999999766554 44999999998765 689999999999999999999999999999999 556
Q ss_pred HHHHHHh------cCCEEEEeccccccc----cccc-CCCCCccEEEeccccccCCCC--cEEEEEecCCCCc--cccee
Q psy15216 158 IGELCRS------KGVIFHCDAAQAVGK----IDIN-IQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTR--IEAQI 222 (2602)
Q Consensus 158 I~~la~~------~g~~livD~a~a~g~----~~~d-l~~~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~--l~~~~ 222 (2602)
|+++|++ ||+++++|+++..-. .... ....+..+++.|++|.+|.+| +||+++++++.+. +....
T Consensus 193 l~~la~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~pGlRiG~~~~~~~~~~~~~~~~~~ 272 (394)
T PRK06836 193 LAALLEEKSKEYGRPIYLISDEPYREIVYDGAEVPYIFKYYDNSIVVYSFSKSLSLPGERIGYIAVNPEMEDADDLVAAL 272 (394)
T ss_pred HHHHHHHhhhccCCCeEEEEeccccccccCCCCCCChHHccCcEEEEecchhhccCcceeeEEEecCHHHhhhHHHHHHH
Confidence 6777888 899999999985321 1111 122334688889999998777 8999998765322 11100
Q ss_pred cCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcccC
Q psy15216 223 HGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIE 302 (2602)
Q Consensus 223 ~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~~ 302 (2602)
... .+.......+.....++...+. .. ....++++.++.+.+.|.+ . |+.+..+.. ....++.++..+
T Consensus 273 ~~~--~~~~~~~~~~~~~q~~~~~~l~---~~--~~~~~~~~~r~~l~~~L~~-~-g~~~~~~~g---g~~~~~~~~~~~ 340 (394)
T PRK06836 273 VFA--NRILGFVNAPALMQRVVAKCLD---AT--VDVSIYKRNRDLLYDGLTE-L-GFECVKPQG---AFYLFPKSPEED 340 (394)
T ss_pred HHH--hhccccccCCHHHHHHHHHHhC---Ch--HHHHHHHHHHHHHHHHHHh-C-CCEeecCCc---eEEEEEeCCCCC
Confidence 000 0000011233333333333332 11 1234566677788888876 3 665543321 112223334445
Q ss_pred hhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 303 GESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 303 ~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
..++.+.| +||.+.+|..|.. .+++||+++ .++++++..++.|++.
T Consensus 341 ~~~~~~~l~~~gv~v~~g~~f~~-------------------~~~iRi~~~--~~~~~~~~~i~~l~~~ 388 (394)
T PRK06836 341 DVAFCEKAKKHNLLLVPGSGFGC-------------------PGYFRLSYC--VDTETIERSLPAFEKL 388 (394)
T ss_pred HHHHHHHHHhCCEEEECchhcCC-------------------CCeEEEEec--CCHHHHHHHHHHHHHH
Confidence 66666666 7999998876643 278999998 4789999999999853
|
|
| >PRK11325 scaffold protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.9e-21 Score=203.26 Aligned_cols=97 Identities=88% Similarity=1.339 Sum_probs=90.3
Q ss_pred hhhhhhhhhhhcCCCCcCcccCCCCcceeeeecCCCCccEEEEEEEEcCCCcEEeeeeeccccchhHhhHHHHHHHHcCC
Q psy15216 1769 MSYSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKTYGCGSAIASSSLVTEWVKGK 1848 (2602)
Q Consensus 1769 ~~y~~~i~dh~~~p~~~g~~~~~~~~~~~~~~~~~~cgd~~~~~~~~~~~~~i~~~~~~~~gc~~~~a~~s~~~~~~~g~ 1848 (2602)
|+|++++++||+||+|.|.+++++...+.++.+||.|||.|+||++|+++|+|+|++|+++||++++|||||++|+++||
T Consensus 1 ~~Y~~~il~h~~~P~n~G~l~~~~~~~~~~~~~np~CGD~i~l~l~v~~~~~I~d~~f~~~GC~is~Asas~~~e~~~Gk 80 (127)
T PRK11325 1 MAYSEKVIDHYENPRNVGSFDKNDPNVGTGMVGAPACGDVMKLQIKVNDEGIIEDAKFKTYGCGSAIASSSLVTEWVKGK 80 (127)
T ss_pred CccHHHHHHHHhCcCCCCCCCCCccccceEEecCCCCccEEEEEEEECCCCeEEEEEEEeeCCHHHHHHHHHHHHHHcCC
Confidence 58999999999999999999988755678889999999999999999757899999999999999999999999999999
Q ss_pred Chhhhhcccccchhhhh
Q psy15216 1849 TLDEAMSIKNTDIAEEL 1865 (2602)
Q Consensus 1849 ~~~~~~~i~~~~i~~~l 1865 (2602)
|++||..|++.++...+
T Consensus 81 tl~ea~~i~~~~i~~~l 97 (127)
T PRK11325 81 TLDEALAIKNTDIAEEL 97 (127)
T ss_pred CHHHHHhcCHHHHHHHc
Confidence 99999999998887654
|
|
| >PLN02450 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.2e-20 Score=240.14 Aligned_cols=289 Identities=18% Similarity=0.204 Sum_probs=203.6
Q ss_pred HHHHHHHHHHHhC--------CCCCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEE
Q psy15216 43 IEKARNEVAQLIY--------ADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVT 114 (2602)
Q Consensus 43 ~~~~r~~lA~~~g--------~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~ 114 (2602)
..++|+++|++++ +++++|++|+|+++++..++.++. +|||.|++++|.|+.+...+.. ..|++++
T Consensus 88 ~~~LR~aiA~~l~~~~~~~~~v~~~~Iiit~Ga~~al~~l~~~l~----~pGd~Vlv~~P~Y~~~~~~~~~--~~g~~~v 161 (468)
T PLN02450 88 LPAFKNALAEFMSEIRGNKVTFDPNKLVLTAGATSANETLMFCLA----EPGDAFLLPTPYYPGFDRDLKW--RTGVEIV 161 (468)
T ss_pred hHHHHHHHHHHHHHhhCCCCCcChHHeEEccChHHHHHHHHHHhC----CCCCEEEECCCCCCchHHHHhh--cCCcEEE
Confidence 4557777777763 578899999999999999999998 8999999999999998766552 2489999
Q ss_pred EeccC--CCCccChHHHHhhccC------CceEEEEecccCcccccccH---HHHHHHHHhcCCEEEEecccccc---cc
Q psy15216 115 YLKPK--NNGLITLSQLEEKICS------DTILVSVMLVNNEIGVIQPI---LEIGELCRSKGVIFHCDAAQAVG---KI 180 (2602)
Q Consensus 115 ~v~~~--~~~~ld~e~l~~~i~~------~tklv~i~~~~npTG~~~~l---~~I~~la~~~g~~livD~a~a~g---~~ 180 (2602)
.++.+ .++.+|++++++++.+ +++++++++||||||.+++. ++|.++|++|++++|+|++++.- ..
T Consensus 162 ~v~~~~~~~~~~~~~~le~~~~~~~~~~~~~k~v~l~nP~NPTG~~~s~e~l~~ll~~a~~~~~~iI~DE~Y~~~~f~~~ 241 (468)
T PLN02450 162 PIHCSSSNGFQITESALEEAYQQAQKLNLKVKGVLITNPSNPLGTTTTRTELNLLVDFITAKNIHLISDEIYSGTVFDSP 241 (468)
T ss_pred EEecCCccCCcCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcccCHHHHHHHHHHHHHCCcEEEEEccccccccCCC
Confidence 99875 3567888999988753 78999999999999999994 46778889999999999998631 11
Q ss_pred c----ccCC---------CCCccEEEeccccccCCCC--cEEEEEecCC-CCcccceecCCCccccccccCcchhHHHHH
Q psy15216 181 D----INIQ---------NYKVDLMSFSAHKIYGPKG--IGALYIRRNP-RTRIEAQIHGGGHEYGLRSGTLATHQIVGM 244 (2602)
Q Consensus 181 ~----~dl~---------~~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~-~~~l~~~~~g~~~~~~~~~gt~~~~~~~al 244 (2602)
+ +.+. ....-+++.|+||.||++| +||++++++. .+.+.... ..+..+.+...++
T Consensus 242 ~~~s~l~~~~~~~~~~~~~~~~vi~l~S~SK~~~l~GlRiG~li~~~~~l~~~~~~~~---------~~~~~s~~~Q~a~ 312 (468)
T PLN02450 242 GFVSVMEVLKDRKLENTDVSNRVHIVYSLSKDLGLPGFRVGAIYSNDEMVVSAATKMS---------SFGLVSSQTQYLL 312 (468)
T ss_pred CcccHHHHhhhcccccCCCCCcEEEEEeccccCCCCCccEEEEEECCHHHHHHHHHHh---------hcCCCCHHHHHHH
Confidence 1 1110 1223477889999988888 8999997543 33332211 1123455555556
Q ss_pred HHHHHH---HHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc-cCh------hHHHHHh---C
Q psy15216 245 GEAFRL---ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEG------ESLLMAI---K 311 (2602)
Q Consensus 245 ~~al~~---~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~-~~~------~~~~~~L---~ 311 (2602)
..+|+- ...++.+.++++.+.++.+.+.|.+ . |+.+..+.. ...+++.++. .+. .++...+ .
T Consensus 313 ~~~L~~~~~~~~~l~~~~~~l~~rr~~l~~~L~~-~-gi~~~~~~~---g~flwi~l~~~~~~~~~~~~~~l~~~ll~~~ 387 (468)
T PLN02450 313 SALLSDKKFTKNYLEENQKRLKQRQKKLVSGLEA-A-GIKCLKSNA---GLFCWVDMRHLLKSNTFEAEMELWKKIVYEV 387 (468)
T ss_pred HHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHH-c-CCcccCCCc---eEEEEEEchHhcCcCCchHHHHHHHHHHHhC
Confidence 566652 2235677788889999999999977 3 665443221 1122223321 111 2233333 5
Q ss_pred CeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 312 DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 312 gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
||.+.||..|... ..+++||+++. .++++++..+++|++.
T Consensus 388 gV~v~PG~~f~~~-----------------~~g~~Rl~f~~-~~~~~l~~~l~ri~~~ 427 (468)
T PLN02450 388 KLNISPGSSCHCT-----------------EPGWFRVCFAN-MSEETLDLAMKRLKSF 427 (468)
T ss_pred CEEEeCccccCCC-----------------CCCEEEEEecC-CCHHHHHHHHHHHHHH
Confidence 9999999877432 13899999985 3578999999999864
|
|
| >PRK03317 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.7e-19 Score=231.59 Aligned_cols=304 Identities=14% Similarity=0.106 Sum_probs=219.2
Q ss_pred CCCCCCHHHHHHHHHHHhh----ccCCCCCccchhHHHHHHHHHHHHHHHHHHh------CCCCCcEEEeCCHHHHHHHH
Q psy15216 1401 ATTPIDPRVVDKMIPYLRV----QFGNPASRNHIYGWTAEKAIEKARNEVAQLI------YADPREIIWTSGATESNNLA 1470 (2602)
Q Consensus 1401 ~~~~~~~~v~eal~~~l~~----~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~------g~~~~~iv~t~gaT~al~~a 1470 (2602)
...++++.+.+++.+.+.. ...+|.. ...++|+.+++++ ++++++|++|+|+++++.++
T Consensus 36 ~~~~~~~~~~~al~~~l~~~~~~~~~Y~~~-----------g~~~lr~aia~~~~~~~~~~~~~~~I~it~G~~~~l~~~ 104 (368)
T PRK03317 36 NPYPPSPALVADIAEAVAEAAAGLNRYPDR-----------DAVALRADLAAYLTAQTGVGLTVENVWAANGSNEILQQL 104 (368)
T ss_pred CCCCCCHHHHHHHHHHHhhhhhhhccCCCC-----------chHHHHHHHHHHhhhhccCCCChhhEEECCCHHHHHHHH
Confidence 3457788899999887643 2223332 2456788888888 46888999999999999999
Q ss_pred HHhhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhcc-CCceEEEEecccccccccc
Q psy15216 1471 IKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKIC-SDTILVSVMLVNNEIGVIQ 1549 (2602)
Q Consensus 1471 l~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~-~~t~lv~l~~~~n~tG~~~ 1549 (2602)
+.++. ++||.|+++.|.|+.+....... |.++..++.+.++.+|++++++++. ++++++++++|+||||.++
T Consensus 105 ~~~~~----~~gd~v~v~~P~y~~~~~~~~~~---g~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~i~l~~p~NPtG~~~ 177 (368)
T PRK03317 105 LQAFG----GPGRTALGFVPSYSMHPIIARGT---HTEWVEGPRAADFTLDVDAAVAAIAEHRPDVVFLTSPNNPTGTAL 177 (368)
T ss_pred HHHhc----CCCCEEEEeCCChHHHHHHHHhc---CCeeEEcccCCCCCCCHHHHHHHHhccCCCEEEEeCCCCCCCCCC
Confidence 99987 89999999999999987766544 8888888776677899999999997 5789999999999999999
Q ss_pred ChHHHHHHhhhcCCEEEEecccccCc---cc--ccC-CCCCccEEEEccccccCCCc--eEEEEEecCCCCccccccccC
Q psy15216 1550 PILEIGELCRSKGVIFHCDAAQAVGK---ID--INI-QNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGG 1621 (2602)
Q Consensus 1550 ~l~~I~~ia~~~gi~vivD~a~~~g~---~~--~~l-~~~~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~~g~ 1621 (2602)
+.+++.++++.+++++|+|++|+.-. .+ ..+ ...+..+++.||+|.+|.+| +||++.++++++.+....
T Consensus 178 ~~~~l~~l~~~~~~~lI~DE~y~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~~~~~~~~~~l~~~~--- 254 (368)
T PRK03317 178 PLDDVEAILDAAPGIVVVDEAYAEFRRSGTPSALTLLPEYPRLVVSRTMSKAFAFAGGRLGYLAAAPAVVDALRLVR--- 254 (368)
T ss_pred CHHHHHHHHHHCCceEEEeCCchhhcccCCcCHHHHHHhCCCEEEEEechhhhccchhhhhhhhCCHHHHHHHHhcC---
Confidence 99999999999999999999986321 01 111 11122366779999888777 799999887766654321
Q ss_pred CccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEe-cCCcH
Q psy15216 1622 GHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN-FIEGE 1700 (2602)
Q Consensus 1622 ~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~-~~~~~ 1700 (2602)
...+.+...+.++.++|+... .+.+.++++.+.++++.+.|.+ .++.+..+.. .++.+. ..+..
T Consensus 255 ------~~~~~s~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~l~~~L~~--~g~~~~~~~~------~~~~~~~~~~~~ 319 (368)
T PRK03317 255 ------LPYHLSAVTQAAARAALRHAD-ELLASVAALRAERDRVVAWLRE--LGLRVAPSDA------NFVLFGRFADRH 319 (368)
T ss_pred ------CCCCCCHHHHHHHHHHhhCHH-HHHHHHHHHHHHHHHHHHHHHH--CCCEeCCCCC------cEEEEeccCCHH
Confidence 112344455555556666322 3344556677788888888876 3665543211 122332 23445
Q ss_pred HHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1701 SLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1701 ~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
.+...| +||.+++. .. .+++|++++ +.+++++++++|++.
T Consensus 320 ~~~~~l~~~Gv~v~~~---~~-------------------~~~iRi~~~---~~~~~~~~~~~l~~~ 361 (368)
T PRK03317 320 AVWQGLLDRGVLIRDV---GI-------------------PGWLRVTIG---TPEENDAFLAALAEV 361 (368)
T ss_pred HHHHHHHHCCEEEEeC---CC-------------------CCeEEEecC---CHHHHHHHHHHHHHH
Confidence 565555 79998742 11 178999987 789999999999874
|
|
| >PRK07777 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.7e-19 Score=233.28 Aligned_cols=312 Identities=17% Similarity=0.176 Sum_probs=216.4
Q ss_pred CHHHHHHHHHHHhhc-cCCCCCccchhHHHHHHHHHHHHHHHHHH----hCC--CCC-cEEEeCCHHHHHHHHHHhhhhh
Q psy15216 1406 DPRVVDKMIPYLRVQ-FGNPASRNHIYGWTAEKAIEKARNEVAQL----IYA--DPR-EIIWTSGATESNNLAIKGAAHF 1477 (2602)
Q Consensus 1406 ~~~v~eal~~~l~~~-~~np~~~~~~~~~~~~~~~~~lr~~ia~~----~g~--~~~-~iv~t~gaT~al~~al~~l~~~ 1477 (2602)
++.+.+++.+.+... ..++.. ....++|+.++++ +|. +++ +|++|+|+++|+.+++.++.
T Consensus 39 ~~~~~~~~~~~~~~~~~~Y~~~----------~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~~~-- 106 (387)
T PRK07777 39 PPEMLEAAQEAIAGGVNQYPPG----------PGIPELRAAIAAQRRRRYGLEYDPDTEVLVTVGATEAIAAAVLGLV-- 106 (387)
T ss_pred CHHHHHHHHHHHhcCCCCCCCC----------CCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHHHHHhc--
Confidence 455677776666431 112211 1134556666654 565 354 79999999999999998886
Q ss_pred hccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCC---CCcChhHHHhhccCCceEEEEeccccccccccC---h
Q psy15216 1478 YKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN---GLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---I 1551 (2602)
Q Consensus 1478 ~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~---~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~---l 1551 (2602)
++||+|+++.|.|+++...+..+ |.+++.++.+++ +.+|+++|++++++++++|++++|+||||.+++ +
T Consensus 107 --~~gd~vli~~p~y~~~~~~~~~~---g~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~ 181 (387)
T PRK07777 107 --EPGDEVLLIEPYYDSYAAVIAMA---GAHRVPVPLVPDGRGFALDLDALRAAVTPRTRALIVNSPHNPTGTVLTAAEL 181 (387)
T ss_pred --CCCCEEEEeCCCchhhHHHHHHC---CCEEEEeecCCccCCCcCCHHHHHHhcCcccEEEEEcCCCCCCCccCCHHHH
Confidence 89999999999999987666555 889988887653 568999999999999999999999999999987 7
Q ss_pred HHHHHHhhhcCCEEEEeccccc----CcccccCC---C-CCccEEEEccccccCCCc--eEEEEEecCCCCccccccccC
Q psy15216 1552 LEIGELCRSKGVIFHCDAAQAV----GKIDINIQ---N-YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGG 1621 (2602)
Q Consensus 1552 ~~I~~ia~~~gi~vivD~a~~~----g~~~~~l~---~-~~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~~g~ 1621 (2602)
++|.++|++|++++|+|++|+. +.....+. . .+.++++.|+||.+|++| +||+++++++++.+.....
T Consensus 182 ~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~l~~~~~~~~~-- 259 (387)
T PRK07777 182 AAIAELAVEHDLLVITDEVYEHLVFDGARHLPLATLPGMRERTVTISSAAKTFNVTGWKIGWACGPAPLIAAVRAAKQ-- 259 (387)
T ss_pred HHHHHHHHhcCcEEEEeccchhcccCCCCcccHhhCCCCcCcEEEEeechhhccCcCceeEEEecCHHHHHHHHHHHh--
Confidence 7889999999999999999853 21111111 1 235788999999888778 7999998876655543221
Q ss_pred CccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEe-----c
Q psy15216 1622 GHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN-----F 1696 (2602)
Q Consensus 1622 ~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~-----~ 1696 (2602)
....+.+.+...++..++.......+..++.+.++++++.+.|.+ .++.+..+.. ..++++. .
T Consensus 260 -----~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~--~~~~~~~~~g-----~~~~~~~~~~~~~ 327 (387)
T PRK07777 260 -----YLTYVGGAPFQPAVAHALDHEDAWVAALRDSLQAKRDRLAAGLAE--AGFEVHDSAG-----TYFLCADPRPLGY 327 (387)
T ss_pred -----hcccCCCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHh--CCCCccCCCc-----ceEEEecccccCC
Confidence 011122333444454555433345677788889999999999987 3555442211 1222222 1
Q ss_pred CCcHHHHHhc---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1697 IEGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1697 ~~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
.+..++...| +||.+.+|..|... .....+++||+++. +.++++..+++|++
T Consensus 328 ~~~~~~~~~l~~~~gv~v~pg~~f~~~--------------~~~~~~~~Ri~~~~--~~~~l~~~l~~l~~ 382 (387)
T PRK07777 328 DDGTEFCRALPERVGVAAIPMSVFYDP--------------ADAWNHLVRFAFCK--RDDTLDEAIRRLRA 382 (387)
T ss_pred CCHHHHHHHHHHhCCEEEeCchHhCCC--------------CcCCCCeEEEEecC--CHHHHHHHHHHHHH
Confidence 2456677666 59999999877431 01113789999984 68999999999986
|
|
| >PRK04781 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.2e-19 Score=231.03 Aligned_cols=283 Identities=13% Similarity=0.113 Sum_probs=202.1
Q ss_pred HHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCC-CEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCC-
Q psy15216 1439 IEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRG-KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN- 1516 (2602)
Q Consensus 1439 ~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~g-d~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~- 1516 (2602)
..++|+.+++++|+++++|++|+|+++++.+++.++. ++| +.|++++|.|+.+....+. .|++++.++.+.
T Consensus 61 ~~~lr~~ia~~~~~~~~~I~~t~G~~~~l~~~~~~~~----~~g~~~vlv~~p~y~~~~~~~~~---~g~~~~~v~~~~~ 133 (364)
T PRK04781 61 PPGLRSALAALYGCAPEQLLIGRGSDEAIDLLVRALC----VPGRDAVLVTPPVFGMYAVCARL---QNAPLVEVPLVDG 133 (364)
T ss_pred HHHHHHHHHHHhCcChHHEEEeCCHHHHHHHHHHHhc----CCCCCeEEEcCCChHHHHHHHHH---cCCEEEEEecCCC
Confidence 4689999999999999999999999999999999887 688 7999999988776554444 499999998742
Q ss_pred --CCCcChhHHHhh-ccCCceEEEEeccccccccccChHHHHHHhhh--cCCEEEEecccccCcc---ccc-CCCCCccE
Q psy15216 1517 --NGLITLSQLEEK-ICSDTILVSVMLVNNEIGVIQPILEIGELCRS--KGVIFHCDAAQAVGKI---DIN-IQNYKVDL 1587 (2602)
Q Consensus 1517 --~~~id~d~l~~~-i~~~t~lv~l~~~~n~tG~~~~l~~I~~ia~~--~gi~vivD~a~~~g~~---~~~-l~~~~~D~ 1587 (2602)
++.+|++++.+. .++++++|++++|+||||.++|.+++.++++. +++++|+|+++..-.. ... +...+.-+
T Consensus 134 ~~~~~~d~~~l~~~~~~~~~~lv~l~~p~NPTG~~~~~~~~~~l~~~~~~~~~iI~Deay~~f~~~~~~~~~~~~~~~vi 213 (364)
T PRK04781 134 ADGFHADVPAIVAAALASNAKLVFLCSPSNPAGSAIALDQIERALQALQGKALVVVDEAYGEFSDVPSAVGLLARYDNLA 213 (364)
T ss_pred ccCCCcCHHHHHHHHhccCCeEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCcEEEEeCcchhhcCCcchHHHHhhCCCEE
Confidence 245789988654 47889999999999999999998888777764 4789999999753211 111 12222347
Q ss_pred EEEccccccCCCc--eEEEEEecCCCCccccccccCCccccCCCCCcchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q psy15216 1588 MSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLA-RIEMKEELKRILFLQKR 1664 (2602)
Q Consensus 1588 ~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~-~~~~~~~~~~~~~l~~~ 1664 (2602)
++.||+|.+|++| +||+++++++++.+..... ..+.+...+.++..+|... .....+..+++.+.+++
T Consensus 214 ~~~SfSK~~gl~GlRvGy~v~~~~l~~~l~~~~~---------~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~r~~ 284 (364)
T PRK04781 214 VLRTLSKAHALAAARIGSLIANAELIAVLRRCQA---------PYPVPTPCAALAEQALSAPALAVTARRVAEVRAERER 284 (364)
T ss_pred EEecChhhcccccceeeeeeCCHHHHHHHHhccC---------CCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 7789999998888 8999999887766654321 1223333333444555421 12344555667888899
Q ss_pred HHHHHhhcCCcEEEeCCCCCCCCceEEEEEecCCcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeE
Q psy15216 1665 LYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSI 1742 (2602)
Q Consensus 1665 l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i 1742 (2602)
+.+.|.+ ++++....++. +.++++...+..++...+ +||.++++..+... .+++
T Consensus 285 l~~~L~~-~~~~~~~~p~~-----g~f~~~~~~~~~~~~~~l~~~gI~v~~~~~~~~~------------------~~~~ 340 (364)
T PRK04781 285 LHAALAQ-LPGVRRVYPSQ-----GNFLLVRFDDAEAAFQALLAAGVVVRDQRAAPRL------------------SDAL 340 (364)
T ss_pred HHHHHHh-CCCCCeECCCC-----CcEEEEEcCCHHHHHHHHHHCCeEEeeCCCCCCC------------------CCeE
Confidence 9999977 56653222222 122333323455666555 89999988654211 2789
Q ss_pred EEecCCCCCHHHHHHHHHHHHH
Q psy15216 1743 RFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1743 Rls~~~~~t~edid~li~~L~~ 1764 (2602)
||+++ +.+++++++++|++
T Consensus 341 Ris~~---~~~~~~~l~~al~~ 359 (364)
T PRK04781 341 RITLG---TPEQNDRVLAALQR 359 (364)
T ss_pred EEeCC---CHHHHHHHHHHHHH
Confidence 99998 78999999999986
|
|
| >PRK02610 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.6e-19 Score=230.33 Aligned_cols=303 Identities=16% Similarity=0.117 Sum_probs=211.0
Q ss_pred CCCCCHHHHHHHHHHHhhc---cCCCCCccchhHHHHHHHHHHHHHHHHHHhC--------CCCCcEEEeCCHHHHHHHH
Q psy15216 1402 TTPIDPRVVDKMIPYLRVQ---FGNPASRNHIYGWTAEKAIEKARNEVAQLIY--------ADPREIIWTSGATESNNLA 1470 (2602)
Q Consensus 1402 ~~~~~~~v~eal~~~l~~~---~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g--------~~~~~iv~t~gaT~al~~a 1470 (2602)
..++++.+.+++.+.++.. ..+|.. ...++|++++++++ +++++|++|+|+++++..+
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~Y~~~-----------G~~~Lr~aia~~~~~~~~~~~~v~~~~I~it~Ga~~al~~~ 107 (374)
T PRK02610 39 PYDLPPDLKQKLAWLYQQGIESNRYPDG-----------GHEALKQAIAEYVNESAAGSSQITPANISVGNGSDELIRSL 107 (374)
T ss_pred CCCCCHHHHHHHHHHHhhcccccCCCCC-----------chHHHHHHHHHHhCccccccCCCCHHHEEEcCChHHHHHHH
Confidence 3567889999998877652 123332 24678999999987 6888999999999999988
Q ss_pred HHhhhhhhccCCC-EEEEcCCCCcchHHHHHHHHhCCcEEEEeccCC-CCCcChhHHHhhcc----CCceEEEEeccccc
Q psy15216 1471 IKGAAHFYKKRGK-HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NGLITLSQLEEKIC----SDTILVSVMLVNNE 1544 (2602)
Q Consensus 1471 l~~l~~~~~~~gd-~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~-~~~id~d~l~~~i~----~~t~lv~l~~~~n~ 1544 (2602)
+.++. .+|| .|++++|.|+.+...++.+ |++++.++.+. ++.+|+++++++++ +++++|++++|+||
T Consensus 108 ~~~~~----~~g~~~Vlv~~P~y~~~~~~~~~~---g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~k~i~l~~P~NP 180 (374)
T PRK02610 108 LIATC----LGGEGSILVAEPTFSMYGILAQTL---GIPVVRVGRDPETFEIDLAAAQSAIEQTQNPPVRVVFVVHPNSP 180 (374)
T ss_pred HHHHc----CCCCCeEEEcCCChHHHHHHHHHc---CCEEEEecCCcccCCCCHHHHHHHHHhhcCCCceEEEEeCCCCC
Confidence 87766 5675 8999999999988777666 99999999865 47799999999987 58999999999999
Q ss_pred cccccChHHHHHHhh-hcCCEEEEecccccCc--cc-ccCCCCCccEEEEccccccCCCc--eEEEEEecCCCCcccccc
Q psy15216 1545 IGVIQPILEIGELCR-SKGVIFHCDAAQAVGK--ID-INIQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQI 1618 (2602)
Q Consensus 1545 tG~~~~l~~I~~ia~-~~gi~vivD~a~~~g~--~~-~~l~~~~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~ 1618 (2602)
||.+++.+++.++++ .+++++|+|+++..-. .. ..+.....-+++.||+|.+|++| +||++.++++++.+....
T Consensus 181 TG~~~s~~~l~~l~~~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~ivi~SfSK~~g~~GlRiG~~v~~~~l~~~l~~~~ 260 (374)
T PRK02610 181 TGNPLTAAELEWLRSLPEDILVVIDEAYFEFSQTTLVGELAQHPNWVILRTFSKAFRLAAHRVGYAIGHPELIAVLEKVR 260 (374)
T ss_pred CCCCCCHHHHHHHHhccCCcEEEEeccccccCccchHHHHhcCCCEEEEEecchhccCcccceeeeecCHHHHHHHHHhc
Confidence 999999776666553 2589999999985321 11 11222222477889999988888 899999887766654332
Q ss_pred ccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEec-C
Q psy15216 1619 HGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-I 1697 (2602)
Q Consensus 1619 ~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~-~ 1697 (2602)
. ..+.+...+.++..++.......+.... ..+.++.+.+.|.. ++++.+. +... ....+.++. .
T Consensus 261 ~---------~~~~~~~~q~a~~~~l~~~~~~~~~~~~-~~~~r~~l~~~L~~-~~~~~~~-p~~g---~f~~~~l~~~~ 325 (374)
T PRK02610 261 L---------PYNLPSFSQLAAQLALEHRQELLAAIPE-ILQERDRLYQALQE-LPQLRVW-PSAA---NFLYLRLSQDA 325 (374)
T ss_pred C---------CCCCCHHHHHHHHHHhcCHHHHHHHHHH-HHHHHHHHHHHHHh-CCCcEeC-CCcc---eEEEEeCCCCC
Confidence 1 1233444555555666533333333333 34446778888866 5666543 2211 122223332 2
Q ss_pred CcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1698 EGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1698 ~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
+..++...| +||.++++ .+++||+++ +.+++++++++|++
T Consensus 326 ~~~~~~~~l~~~gi~v~~~------------------------~~~lRls~~---~~~~~~~~l~~l~~ 367 (374)
T PRK02610 326 ALAALHQALKAQGTLVRHT------------------------GGGLRITIG---TPEENQRTLERLQA 367 (374)
T ss_pred CHHHHHHHHHHCCEEEEeC------------------------CCeEEEeCC---CHHHHHHHHHHHHH
Confidence 445666665 78888631 168999988 46788999999986
|
|
| >PLN02376 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.8e-19 Score=233.60 Aligned_cols=286 Identities=15% Similarity=0.186 Sum_probs=200.5
Q ss_pred HHHHHHHHHHHhC--------CCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEE
Q psy15216 1439 IEKARNEVAQLIY--------ADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVT 1510 (2602)
Q Consensus 1439 ~~~lr~~ia~~~g--------~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~ 1510 (2602)
..++|++++++++ +++++|++|+|+++|+..++.++. +|||.|++++|.|+.+...+.. +.|++++
T Consensus 96 ~~~LR~aiA~~l~~~~g~~v~v~pe~Ivit~Ga~~al~~l~~~l~----~pGD~Vlv~~P~Y~~~~~~~~~--~~G~~vv 169 (496)
T PLN02376 96 LKKFRQAIAHFMGKARGGKVTFDPERVVMSGGATGANETIMFCLA----DPGDVFLIPSPYYAAFDRDLRW--RTGVEII 169 (496)
T ss_pred cHHHHHHHHHHHHHHhCCCCcCChhhEEEccchHHHHHHHHHHhC----CCCCEEEECCCCccchHHHHHh--hCCCEEE
Confidence 4567777777764 688999999999999999999997 8999999999999998765542 2499999
Q ss_pred EeccCC--CCCcChhHHHhhc------cCCceEEEEeccccccccccC---hHHHHHHhhhcCCEEEEecccccCc----
Q psy15216 1511 YLKPKN--NGLITLSQLEEKI------CSDTILVSVMLVNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQAVGK---- 1575 (2602)
Q Consensus 1511 ~v~~~~--~~~id~d~l~~~i------~~~t~lv~l~~~~n~tG~~~~---l~~I~~ia~~~gi~vivD~a~~~g~---- 1575 (2602)
.++.+. ++.+|++.+++++ ..++++|++++|+||||.++| +++|+++|++||+++|+|++|+.-.
T Consensus 170 ~v~~~~~~~~~~~~~~le~a~~~a~~~~~~~k~l~l~nP~NPTG~~~s~e~l~~L~~~a~~~~i~lI~DEiY~~~~f~~~ 249 (496)
T PLN02376 170 PVPCSSSDNFKLTVDAADWAYKKAQESNKKVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIYAATVFAGG 249 (496)
T ss_pred EEeCCCCccCcCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccccccCCC
Confidence 999853 5678999997653 257899999999999999999 6678889999999999999987421
Q ss_pred cccc---C-CC-----CCcc--EEEEccccccCCCc--eEEEEEecCCC-CccccccccCCccccCCCCCcchhHHHHHH
Q psy15216 1576 IDIN---I-QN-----YKVD--LMSFSAHKIYGPKG--IGALYIRRNPR-TRIEAQIHGGGHEYGLRSGTLATHQIVGMG 1641 (2602)
Q Consensus 1576 ~~~~---l-~~-----~~~D--~~v~S~~K~~gp~G--~G~l~~~~~~~-~~l~~~~~g~~~~~~~~~gt~~~~~~~al~ 1641 (2602)
...+ + .+ .+.+ +++.|++|.+|++| +||++.+++.+ +.+.... ..+..+...+.++.
T Consensus 250 ~~~si~~l~~~~~~~~~~~~~v~vv~S~SK~~glpGlRvG~li~~~~~l~~~~~~~~---------~~~~vs~~~Q~a~~ 320 (496)
T PLN02376 250 DFVSVAEVVNDVDISEVNVDLIHIVYSLSKDMGLPGFRVGIVYSFNDSVVSCARKMS---------SFGLVSSQTQLMLA 320 (496)
T ss_pred CcccHHHhhccccccccCCCeEEEEEeccccCCCCcceEEEEEECCHHHHHHHHHHh---------hcCCCCHHHHHHHH
Confidence 1111 1 11 1112 44679999888888 89999864432 2222111 11234455555565
Q ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecC---Cc-------HHHHHhc--
Q psy15216 1642 EAFR---LARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI---EG-------ESLLMAI-- 1706 (2602)
Q Consensus 1642 ~aL~---~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~---~~-------~~~~~~L-- 1706 (2602)
.+|. +....+.+.++++.+.++.+.+.|.+ .++.+..+ ..+.++++... .. .++...+
T Consensus 321 ~~L~d~~~~~~~l~~~r~~l~~r~~~l~~~L~~--~gi~~~~~-----~aG~flwi~l~~~~~~~~~~~~e~~l~~~ll~ 393 (496)
T PLN02376 321 SMLSDDQFVDNFLMESSRRLGIRHKVFTTGIKK--ADIACLTS-----NAGLFAWMDLRHLLRDRNSFESEIELWHIIID 393 (496)
T ss_pred HHhCChhHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCcccCC-----CceEEEEEEchhhhccCCchhHHHHHHHHHHH
Confidence 6664 22344566677888888888888876 35554322 12233343321 11 2344433
Q ss_pred -CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1707 -KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1707 -~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
.||.+.+|..|... ..+++||+++. .+.+.++..+++|++
T Consensus 394 ~~gV~v~pGs~F~~~-----------------~~g~~Ri~fa~-~~~~~l~~al~rl~~ 434 (496)
T PLN02376 394 KVKLNVSPGSSFRCT-----------------EPGWFRICFAN-MDDDTLHVALGRIQD 434 (496)
T ss_pred cCCEEEeCccccCCC-----------------CCCEEEEEeeC-CCHHHHHHHHHHHHH
Confidence 59999999887532 12899999985 356899999999987
|
|
| >PRK08354 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.1e-19 Score=222.09 Aligned_cols=285 Identities=13% Similarity=0.024 Sum_probs=186.2
Q ss_pred CCCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccC
Q psy15216 6 TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKR 85 (2602)
Q Consensus 6 ~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~ 85 (2602)
++.+|+.+.+++.+++.....+|. ...+|+++++++| ++|++|+|+++|+.+++..+ .+
T Consensus 18 np~~p~~~~~a~~~~~~~~~~yp~-------------~~~l~~~ia~~~~---~~I~vt~G~~~al~~~~~~~-----~~ 76 (311)
T PRK08354 18 NPYPPEWLDEMFERAKEISGRYTY-------------YEWLEEEFSKLFG---EPIVITAGITEALYLIGILA-----LR 76 (311)
T ss_pred CCCCCHHHHHHHHHHHHHhhcCCC-------------hHHHHHHHHHHHC---CCEEECCCHHHHHHHHHHhh-----CC
Confidence 343467888888877654322221 2457899999998 47999999999999887543 38
Q ss_pred CCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHH---HHHHHH
Q psy15216 86 GKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPIL---EIGELC 162 (2602)
Q Consensus 86 gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~---~I~~la 162 (2602)
||.|++++|.|+.+...++.+ |++++.++ +|++.+++.++ +++++++++||||||.+++.+ +|.++|
T Consensus 77 gd~vlv~~P~y~~~~~~~~~~---g~~~~~~~------~d~~~l~~~~~-~~~~vi~~~P~NPTG~~~~~~~l~~l~~~a 146 (311)
T PRK08354 77 DRKVIIPRHTYGEYERVARFF---AARIIKGP------NDPEKLEELVE-RNSVVFFCNPNNPDGKFYNFKELKPLLDAV 146 (311)
T ss_pred CCeEEEeCCCcHHHHHHHHHc---CCEEeecC------CCHHHHHHhhc-CCCEEEEecCCCCCCCccCHHHHHHHHHHh
Confidence 999999999999998877766 88887764 57889988886 578999999999999999954 566778
Q ss_pred HhcCCEEEEecccccccccccCCCCCccEEEeccccccCCCC--cEEEEEecCCCCcccceecCCCccccccccCcchhH
Q psy15216 163 RSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQ 240 (2602)
Q Consensus 163 ~~~g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~ 240 (2602)
+++|+++|+|+++..-...-........+++.|++|.||++| +||+++ +.+.+.... ...+.+..+
T Consensus 147 ~~~~~~li~De~y~~f~~~~~~~~~~~vi~~~S~SK~~~l~GlRiG~~v~---~~~~l~~~~---------~~~~~~~~~ 214 (311)
T PRK08354 147 EDRNALLILDEAFIDFVKKPESPEGENIIKLRTFTKSYGLPGIRVGYVKG---FEEAFRSVR---------MPWSIGSTG 214 (311)
T ss_pred hhcCcEEEEeCcchhccccccccCCCcEEEEeccHhhcCCccceeeeeee---hHHHHHHcC---------CCccCCHHH
Confidence 889999999999853221100011233578889999999888 799998 333343222 122333344
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcccChhHHHHHh--CCeEEccc
Q psy15216 241 IVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDIAVSSG 318 (2602)
Q Consensus 241 ~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~v~~g 318 (2602)
..++.+.++ ...+.. .+.++.+++.... +.+.... ++. ..++.+...+..++.+.| +||.+++|
T Consensus 215 ~~~~~~~~~---~~~~~~----~~~~~~~~~~~~~-l~~~l~~-~~~-----~~~~~~~~~~~~~~~~~l~~~gv~v~~g 280 (311)
T PRK08354 215 YAFLEFLIE---DDFEHL----RKTMPLIWREKER-FEKALYV-KSD-----ANFFIKDVGDAEKFVEFLKRNGILVRDC 280 (311)
T ss_pred HHHHHHHHH---hHHHHH----HHHHHHHHHHHHH-HHHhcCC-CCC-----CcEEEEECCCHHHHHHHHHHCCeEEEec
Confidence 333323222 111211 1222222222211 1111111 111 112223333556666666 89999999
Q ss_pred ccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 319 SACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 319 ~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
..+.. ++++||+++ ..++.++++++|++.
T Consensus 281 ~~f~~-------------------~~~iRi~~~---~~~~~~~l~~al~~~ 309 (311)
T PRK08354 281 TSFGL-------------------PGYIRFSVR---DREENEKLIRALREW 309 (311)
T ss_pred ccCCC-------------------CCeEEEEeC---CHHHHHHHHHHHHHh
Confidence 76632 279999998 778899999999863
|
|
| >TIGR00858 bioF 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.5e-19 Score=232.47 Aligned_cols=315 Identities=18% Similarity=0.160 Sum_probs=219.2
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCC
Q psy15216 1404 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK 1483 (2602)
Q Consensus 1404 ~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd 1483 (2602)
+.++.+++++.+++... +.... .+...+.......++++.++++++. ++++++++| ++++..++.++. ++||
T Consensus 30 ~~~~~v~~a~~~~~~~~-~~~~~-~~~~~~g~~~~~~~l~~~la~~~~~-~~~i~~~~G-~~~~~~~l~~~~----~~gd 101 (360)
T TIGR00858 30 ASHPEVIQAAQQGAEQY-GAGST-ASRLVSGNSPLHEELEEELAEWKGT-EAALLFSSG-YLANVGVISALV----GKGD 101 (360)
T ss_pred CCCHHHHHHHHHHHHhc-CCCCC-CcCcccCCcHHHHHHHHHHHHHhCC-CCEEEECch-HHHHHHHHHHhC----CCCC
Confidence 45688999999988652 11111 1111122234577899999999985 456666666 566656667665 8999
Q ss_pred EEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccC----CceEEEEeccccccccccChHHHHHHhh
Q psy15216 1484 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS----DTILVSVMLVNNEIGVIQPILEIGELCR 1559 (2602)
Q Consensus 1484 ~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~----~t~lv~l~~~~n~tG~~~~l~~I~~ia~ 1559 (2602)
+|+++++.|+++...+... |++++.++. +|++++++.+++ +++++++.+++|+||...|+++|.++|+
T Consensus 102 ~v~~~~~~~~~~~~~~~~~---g~~~~~~~~-----~d~~~l~~~~~~~~~~~~~~v~~~~~~~~~G~~~~~~~i~~l~~ 173 (360)
T TIGR00858 102 LILSDALNHASLIDGCRLS---GARVRRYRH-----NDVEHLERLLEKNRGERRKLIVTDGVFSMDGDIAPLPQLVALAE 173 (360)
T ss_pred EEEEEccccHHHHHHHHhc---CCceEEecC-----CCHHHHHHHHHHcccCCCeEEEEeCCccCCCCCcCHHHHHHHHH
Confidence 9999999999987766554 888887753 588999998864 5789999999999999999999999999
Q ss_pred hcCCEEEEecccccCccccc---------CCCCCccEEEEccccccCCCceEEEEEecCCCCccccccccCCccccCCCC
Q psy15216 1560 SKGVIFHCDAAQAVGKIDIN---------IQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSG 1630 (2602)
Q Consensus 1560 ~~gi~vivD~a~~~g~~~~~---------l~~~~~D~~v~S~~K~~gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~g 1630 (2602)
+||+++|+|++|+.+....+ +...+.++++.|+||.+|++| ||++.++++++.+.+.... ..+ .+
T Consensus 174 ~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~g-G~~~~~~~~~~~~~~~~~~----~~~-~~ 247 (360)
T TIGR00858 174 RYGAWLMVDDAHGTGVLGEDGRGTLEHFGLKPEPVDIQVGTLSKALGSYG-AYVAGSQALIDYLINRART----LIF-ST 247 (360)
T ss_pred HcCcEEEEECcccccCcCCCCCchHHhcCCCccCCcEEEEechhhhhccC-cEEEcCHHHHHHHHHhCcc----cee-cC
Confidence 99999999999986643221 222356899999999889888 9999887665554322110 011 12
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEec-CCcHHHHHhc--C
Q psy15216 1631 TLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGESLLMAI--K 1707 (2602)
Q Consensus 1631 t~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~L--~ 1707 (2602)
+.+..++.++.++++.... .+..++++.++++++.+.|.+ . ++.+..+ . ..+..+.++. .+..++...| +
T Consensus 248 ~~~~~~~~a~~~al~~~~~-~~~~~~~~~~~~~~l~~~L~~-~-~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~l~~~ 320 (360)
T TIGR00858 248 ALPPAVAAAALAALELIQE-EPWRREKLLALIARLRAGLEA-L-GFTLMPS-C---TPIVPVIIGDNASALALAEELQQQ 320 (360)
T ss_pred CCCHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHHHHH-c-CCccCCC-C---CCEEEEEeCCHHHHHHHHHHHHHC
Confidence 3444556666677775443 356788999999999999987 3 4544321 1 1222233332 2345666666 7
Q ss_pred CEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHH
Q psy15216 1708 DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK 1763 (2602)
Q Consensus 1708 gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~ 1763 (2602)
||.+.++..+..+ ...+++|++++.+++.+|+++++++|+
T Consensus 321 gI~v~~~~~~~~~----------------~~~~~iRis~~~~~~~~~i~~~l~~l~ 360 (360)
T TIGR00858 321 GIFVGAIRPPTVP----------------AGTSRLRLTLSAAHTPGDIDRLAEALK 360 (360)
T ss_pred CeeEeeeCCCCCC----------------CCCceEEEEEcCCCCHHHHHHHHHhhC
Confidence 9999865443211 012589999999999999999999874
|
This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model. |
| >PLN02483 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.6e-19 Score=233.80 Aligned_cols=318 Identities=17% Similarity=0.198 Sum_probs=215.7
Q ss_pred CHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCEE
Q psy15216 10 DPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHI 89 (2602)
Q Consensus 10 p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~V 89 (2602)
++...+++.+++........ .....+......+++++.+|+++|. ++.+++++| ..++..++.++. ++||+|
T Consensus 117 ~~~~~~~~~~ai~~~g~~~~--~sr~~~g~~~~~~ele~~lA~~~g~-~~ai~~~~G-~~an~~~i~al~----~~Gd~V 188 (489)
T PLN02483 117 DEYCTPRVIESLKKYSASTC--SSRVDGGTTKLHRELEELVARFVGK-PAAIVFGMG-YATNSTIIPALI----GKGGLI 188 (489)
T ss_pred CHHHHHHHHHHHHHhCCCCC--ccccccCCcHHHHHHHHHHHHHhCC-CcEEEECCH-HHHHHHHHHHhC----CCCCEE
Confidence 34444555555544221111 1222233456789999999999995 456777665 455566777776 899999
Q ss_pred EEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhcc-------CCc-----e-EEEEecccCcccccccHH
Q psy15216 90 ITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKIC-------SDT-----I-LVSVMLVNNEIGVIQPIL 156 (2602)
Q Consensus 90 lv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~-------~~t-----k-lv~i~~~~npTG~~~~l~ 156 (2602)
++++++|+++...++.. |++++.++.+ |++++++.++ ++| + +|++.++.|++|.+.+++
T Consensus 189 i~d~~~h~s~~~~~~~~---Ga~v~~~~~~-----d~~~le~~l~~~i~~~~p~t~~p~~k~livve~v~s~~G~~~~l~ 260 (489)
T PLN02483 189 ISDSLNHNSIVNGARGS---GATIRVFQHN-----TPSHLEEVLREQIAEGQPRTHRPWKKIIVIVEGIYSMEGELCKLP 260 (489)
T ss_pred EEcchhhHHHHHHHHHc---CCeEEEEeCC-----CHHHHHHHHHhhhhccccccccCCceEEEEECCCCCCCCcccCHH
Confidence 99999999988776554 9999999854 4555555442 333 5 556666779999999999
Q ss_pred HHHHHHHhcCCEEEEeccccccccc---------ccCCCCCccEEEeccccccCCCCcEEEEEecCCCCcccceecCCCc
Q psy15216 157 EIGELCRSKGVIFHCDAAQAVGKID---------INIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGH 227 (2602)
Q Consensus 157 ~I~~la~~~g~~livD~a~a~g~~~---------~dl~~~~~D~~~~S~~K~~Gp~G~G~l~~~~~~~~~l~~~~~g~~~ 227 (2602)
+|.++|++||+++++|++|+.|... .++...+.|++++|+||.+|+.| ||+++++++++.++....+.
T Consensus 261 ~I~~la~~~~~~livDEa~s~g~~G~~G~g~~~~~~v~~~~~dI~~~SfSKs~g~~G-G~i~~~~~li~~l~~~~~~~-- 337 (489)
T PLN02483 261 EIVAVCKKYKAYVYLDEAHSIGAVGKTGRGVCELLGVDPADVDIMMGTFTKSFGSCG-GYIAGSKELIQYLKRTCPAH-- 337 (489)
T ss_pred HHHHHHHHcCCEEEEECcCccCccCCCCCchHHhcCCCcccCcEEEEecchhcccCc-eEEEcCHHHHHHHHHhCccc--
Confidence 9999999999999999999865421 12222357899999999999987 99999988887776443111
Q ss_pred cccccccCcchhHHHHHHHHHHHHH-----HhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcccC
Q psy15216 228 EYGLRSGTLATHQIVGMGEAFRLAR-----IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIE 302 (2602)
Q Consensus 228 ~~~~~~gt~~~~~~~al~~al~~~~-----~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~~ 302 (2602)
...++.+.....++.++|+... ....+..++++++++++++.|.+ . |+.+.++.. .|.+..+.+...+
T Consensus 338 ---~~~~~~~p~~~~~~~aaL~~l~~~~g~~~~~~~~~~l~~~~~~l~~~L~~-~-G~~v~~~~~--sp~~~l~l~~~~~ 410 (489)
T PLN02483 338 ---LYATSMSPPAVQQVISAIKVILGEDGTNRGAQKLAQIRENSNFFRSELQK-M-GFEVLGDND--SPVMPIMLYNPAK 410 (489)
T ss_pred ---cccCCcCHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHH-C-CCcccCCCC--CCEEEEEECCHHH
Confidence 1122344444445567777433 12345678899999999999988 3 776664432 2333333232233
Q ss_pred hhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 303 GESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 303 ~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
..++.+.| +||.+.+...+..+ ...+.+|++++..+|++|+++++++|++.
T Consensus 411 ~~~~~~~Ll~~GI~v~~~~fp~~p----------------~~~~~vRi~isa~~t~edId~~l~~L~~~ 463 (489)
T PLN02483 411 IPAFSRECLKQNVAVVVVGFPATP----------------LLLARARICISASHSREDLIKALEVISEV 463 (489)
T ss_pred HHHHHHHHHHCCcEEeeeCCCCCC----------------CCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 44566555 79999863222211 11267999999999999999999999964
|
|
| >cd06502 TA_like Low-specificity threonine aldolase (TA) | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.7e-20 Score=233.89 Aligned_cols=307 Identities=18% Similarity=0.154 Sum_probs=207.9
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCC
Q psy15216 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK 87 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd 87 (2602)
++|+.+++++.+++... . .+......+++++.+++++| ++++++++|+|+|+..++.++. ++||
T Consensus 9 ~~~~~v~~a~~~~~~~~---~-------~~~~~~~~~~l~~~~a~~~g--~~~~~~~~~gt~a~~~~~~~l~----~~gd 72 (338)
T cd06502 9 GPTPEMLEAMAAANVGD---D-------VYGEDPTTAKLEARAAELFG--KEAALFVPSGTAANQLALAAHT----QPGG 72 (338)
T ss_pred CCCHHHHHHHHhcccCC---c-------ccCCCHHHHHHHHHHHHHhC--CCeEEEecCchHHHHHHHHHhc----CCCC
Confidence 57888899988765321 0 11112457889999999999 5688889999999999999887 8999
Q ss_pred EEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccC-------CceEEEEecccCccccccc---HHH
Q psy15216 88 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS-------DTILVSVMLVNNEIGVIQP---ILE 157 (2602)
Q Consensus 88 ~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~-------~tklv~i~~~~npTG~~~~---l~~ 157 (2602)
+|+++++.|+++...+......|++++.++.+. +.+|++++++++++ ++++|++++|+|| |.+++ +++
T Consensus 73 ~v~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n~-g~~~~~~~l~~ 150 (338)
T cd06502 73 SVICHETAHIYTDEAGAPEFLSGVKLLPVPGEN-GKLTPEDLEAAIRPRDDIHFPPPSLVSLENTTEG-GTVYPLDELKA 150 (338)
T ss_pred eEEEecCcceeeecCCcHHHHcCceEEeecCCC-CcCCHHHHHHHhhccCCCcCCcceEEEEEeecCC-ccccCHHHHHH
Confidence 999999999886543222223599999998764 67999999999975 7899999999997 54434 677
Q ss_pred HHHHHHhcCCEEEEeccccccc-----ccccCCCCCccEEEeccccccCCCCcEEEEEecCCCCcccceecCCCcccccc
Q psy15216 158 IGELCRSKGVIFHCDAAQAVGK-----IDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLR 232 (2602)
Q Consensus 158 I~~la~~~g~~livD~a~a~g~-----~~~dl~~~~~D~~~~S~~K~~Gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~ 232 (2602)
|+++|++||+++++|++|..+. .++.....++|+++.|+||++|++|.++++.++++++.+.+....++.
T Consensus 151 i~~~~~~~~~~livDea~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----- 225 (338)
T cd06502 151 ISALAKENGLPLHLDGARLANAAAALGVALKTYKSGVDSVSFCLSKGGGAPVGAVVVGNRDFIARARRRRKQAGG----- 225 (338)
T ss_pred HHHHHHHcCCeEeechHHHHHHHHhcCCCHHHHHhcCCEEEEeccccCCCccceEEECCHHHHHHHHHHHHHhCC-----
Confidence 9999999999999999874331 111111236789999999999877755666777777777654321100
Q ss_pred ccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcccC--hhHHHHHh
Q psy15216 233 SGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIE--GESLLMAI 310 (2602)
Q Consensus 233 ~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~L 310 (2602)
..+.+.....++..+|+ ...+.+..++..++++++.+.|.+ . ++.+..+ ..++..+.++... ...+.+.+
T Consensus 226 ~~~~~~~~~~a~~~~L~--~~~~~~~~~~~~~~~~~l~~~L~~-~-~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~l 297 (338)
T cd06502 226 GMRQSGFLAAAGLAALE--NDLWLRRLRHDHEMARRLAEALEE-L-GGLESEV----QTNIVLLDPVEANAVFVELSKEA 297 (338)
T ss_pred ChhhHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHh-c-CCCcccc----cCCeEEEecCCccHHHHHHHHHH
Confidence 01122222233333343 123456667888888999999977 3 4433221 1233444433211 11333332
Q ss_pred -----CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 311 -----KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 311 -----~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
+|+.+++.. .++|||+++.+++++|++++++++++
T Consensus 298 ~~~~~~gi~~~~~~-----------------------~~~lRi~~~~~~~~~~i~~~~~~l~~ 337 (338)
T cd06502 298 IERRGEGVLFYAWG-----------------------EGGVRFVTHWDTTEEDVDELLSALKA 337 (338)
T ss_pred HHhhhCCEEEEecC-----------------------CCeEEEEeecCCCHHHHHHHHHHHhc
Confidence 366654211 16799999999999999999999874
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway. |
| >PLN02450 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.6e-19 Score=235.93 Aligned_cols=287 Identities=19% Similarity=0.213 Sum_probs=204.3
Q ss_pred HHHHHHHHHHHhC--------CCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEE
Q psy15216 1439 IEKARNEVAQLIY--------ADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVT 1510 (2602)
Q Consensus 1439 ~~~lr~~ia~~~g--------~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~ 1510 (2602)
..++|++++++++ +++++|++|+|+++++..++.++. +|||.|++++|.|+.+...+.. ..|++++
T Consensus 88 ~~~LR~aiA~~l~~~~~~~~~v~~~~Iiit~Ga~~al~~l~~~l~----~pGd~Vlv~~P~Y~~~~~~~~~--~~g~~~v 161 (468)
T PLN02450 88 LPAFKNALAEFMSEIRGNKVTFDPNKLVLTAGATSANETLMFCLA----EPGDAFLLPTPYYPGFDRDLKW--RTGVEIV 161 (468)
T ss_pred hHHHHHHHHHHHHHhhCCCCCcChHHeEEccChHHHHHHHHHHhC----CCCCEEEECCCCCCchHHHHhh--cCCcEEE
Confidence 4567888888774 578899999999999999999987 8999999999999998765542 2489999
Q ss_pred EeccC--CCCCcChhHHHhhccC------CceEEEEeccccccccccC---hHHHHHHhhhcCCEEEEecccccC---cc
Q psy15216 1511 YLKPK--NNGLITLSQLEEKICS------DTILVSVMLVNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQAVG---KI 1576 (2602)
Q Consensus 1511 ~v~~~--~~~~id~d~l~~~i~~------~t~lv~l~~~~n~tG~~~~---l~~I~~ia~~~gi~vivD~a~~~g---~~ 1576 (2602)
.++.+ .++.+|++++++++.+ ++++|++++|+||||.++| +++|+++|++||+++|+|++++.- ..
T Consensus 162 ~v~~~~~~~~~~~~~~le~~~~~~~~~~~~~k~v~l~nP~NPTG~~~s~e~l~~ll~~a~~~~~~iI~DE~Y~~~~f~~~ 241 (468)
T PLN02450 162 PIHCSSSNGFQITESALEEAYQQAQKLNLKVKGVLITNPSNPLGTTTTRTELNLLVDFITAKNIHLISDEIYSGTVFDSP 241 (468)
T ss_pred EEecCCccCCcCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcccCHHHHHHHHHHHHHCCcEEEEEccccccccCCC
Confidence 99875 3556888999988854 7899999999999999999 667888899999999999998631 10
Q ss_pred c----ccCC---------CCCccEEEEccccccCCCc--eEEEEEecCC-CCccccccccCCccccCCCCCcchhHHHHH
Q psy15216 1577 D----INIQ---------NYKVDLMSFSAHKIYGPKG--IGALYIRRNP-RTRIEAQIHGGGHEYGLRSGTLATHQIVGM 1640 (2602)
Q Consensus 1577 ~----~~l~---------~~~~D~~v~S~~K~~gp~G--~G~l~~~~~~-~~~l~~~~~g~~~~~~~~~gt~~~~~~~al 1640 (2602)
+ +.+. ....-+++.|++|.+|++| +||++.+++. .+.+.... ..+..+.+.+.++
T Consensus 242 ~~~s~l~~~~~~~~~~~~~~~~vi~l~S~SK~~~l~GlRiG~li~~~~~l~~~~~~~~---------~~~~~s~~~Q~a~ 312 (468)
T PLN02450 242 GFVSVMEVLKDRKLENTDVSNRVHIVYSLSKDLGLPGFRVGAIYSNDEMVVSAATKMS---------SFGLVSSQTQYLL 312 (468)
T ss_pred CcccHHHHhhhcccccCCCCCcEEEEEeccccCCCCCccEEEEEECCHHHHHHHHHHh---------hcCCCCHHHHHHH
Confidence 1 1110 1223477889999888888 8999997543 33222211 1123455566666
Q ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecC---Cc------HHHHHhc--
Q psy15216 1641 GEAFRL---ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI---EG------ESLLMAI-- 1706 (2602)
Q Consensus 1641 ~~aL~~---~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~---~~------~~~~~~L-- 1706 (2602)
..+|+. ....+.+.++++.+.++.+.+.|.+ . ++.+..+. ...++++... +. .++...|
T Consensus 313 ~~~L~~~~~~~~~l~~~~~~l~~rr~~l~~~L~~-~-gi~~~~~~-----~g~flwi~l~~~~~~~~~~~~~~l~~~ll~ 385 (468)
T PLN02450 313 SALLSDKKFTKNYLEENQKRLKQRQKKLVSGLEA-A-GIKCLKSN-----AGLFCWVDMRHLLKSNTFEAEMELWKKIVY 385 (468)
T ss_pred HHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHH-c-CCcccCCC-----ceEEEEEEchHhcCcCCchHHHHHHHHHHH
Confidence 666652 2235677788889999999999987 3 55443221 1223333311 11 2233333
Q ss_pred -CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1707 -KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1707 -~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
+||.+.+|..|... ..+++||+++. .+.++++..+++|++.
T Consensus 386 ~~gV~v~PG~~f~~~-----------------~~g~~Rl~f~~-~~~~~l~~~l~ri~~~ 427 (468)
T PLN02450 386 EVKLNISPGSSCHCT-----------------EPGWFRVCFAN-MSEETLDLAMKRLKSF 427 (468)
T ss_pred hCCEEEeCccccCCC-----------------CCCEEEEEecC-CCHHHHHHHHHHHHHH
Confidence 69999999877532 13899999985 3578999999999873
|
|
| >PLN02231 alanine transaminase | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.6e-19 Score=233.87 Aligned_cols=328 Identities=16% Similarity=0.170 Sum_probs=220.6
Q ss_pred CCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHh----C--CCCCcEEEeCCHHHHHHHHHHhccccc
Q psy15216 9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI----Y--ADPREIIWTSGATESNNLAIKGAAHFY 82 (2602)
Q Consensus 9 ~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~----g--~~~~~Iv~t~g~T~al~~~~~~l~~~~ 82 (2602)
-|..++++..+.+....+ ... .+|.......++|+.+|+++ | +++++|++|+|+++|+.+++.++.
T Consensus 141 fp~~~i~~a~~~l~~~~~-~~~----~~Y~~s~G~~~lReaIA~~~~~r~g~~~~pe~I~iT~Ga~~ai~~~~~~l~--- 212 (534)
T PLN02231 141 FSADAIERAWQILDQIPG-RAT----GAYSHSQGIKGLRDAIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLI--- 212 (534)
T ss_pred CCHHHHHHHHHHHHhcCC-ccc----cCcCCCCCcHHHHHHHHHHHHhccCCCCCcccEEEeCCHHHHHHHHHHHhc---
Confidence 355666666665543211 111 12222334566777777766 4 477899999999999999999986
Q ss_pred ccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCC--CCccChHHHHhhccC------CceEEEEecccCccccccc
Q psy15216 83 KKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICS------DTILVSVMLVNNEIGVIQP 154 (2602)
Q Consensus 83 ~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~ld~e~l~~~i~~------~tklv~i~~~~npTG~~~~ 154 (2602)
..+||.|+++.|.|+.+...+... |++++.+++++ ++.+|+++|++++++ ++|++++++|+||||.+++
T Consensus 213 ~~~gd~Vli~~P~Y~~y~~~~~~~---g~~~v~~~l~~~~~~~~d~~~Le~~l~~~~~~~~~~k~ivl~nP~NPTG~vls 289 (534)
T PLN02231 213 RSEKDGILCPIPQYPLYSASIALH---GGTLVPYYLDEATGWGLEISELKKQLEDARSKGITVRALVVINPGNPTGQVLA 289 (534)
T ss_pred cCCCCEEEEeCCCChhHHHHHHHc---CCEEEEEecCcccCCCCCHHHHHHHHHHHhhcCCCeEEEEEeCCCCCCCcCCC
Confidence 137999999999999988777766 99999998875 368999999999864 6899999999999999998
Q ss_pred ---HHHHHHHHHhcCCEEEEeccccccc-----ccccCCC---------CC-ccEEEecccc-ccCCCC--cEEEEE---
Q psy15216 155 ---ILEIGELCRSKGVIFHCDAAQAVGK-----IDINIQN---------YK-VDLMSFSAHK-IYGPKG--IGALYI--- 210 (2602)
Q Consensus 155 ---l~~I~~la~~~g~~livD~a~a~g~-----~~~dl~~---------~~-~D~~~~S~~K-~~Gp~G--~G~l~~--- 210 (2602)
+++|+++|++||++||+|++|..-. ....+.. .+ .-+++.|+|| ++|.+| +||+.+
T Consensus 290 ~e~l~~Iv~~a~~~~l~lI~DEvY~~l~y~~~~~~~s~~~~~~~~g~~~~~~~vi~l~S~SK~~~g~pGlRiGy~~~~~~ 369 (534)
T PLN02231 290 EENQRDIVEFCKQEGLVLLADEVYQENVYVPDKKFHSFKKVARSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGF 369 (534)
T ss_pred HHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCcccHHHHHhhhccccCCceEEEEeccCcccccCCccceEEEEEecC
Confidence 5568888999999999999975321 1111110 11 1356679999 567777 899987
Q ss_pred ecCCCCcccceecCCCccccccccCcchhHHHHHHHHHH-------HHH---HhHHHHHHHHHHHHHHHHHHHhhccCce
Q psy15216 211 RRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFR-------LAR---IEMKEELKRILFLQKRLYNGLMESIEEI 280 (2602)
Q Consensus 211 ~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~-------~~~---~~~~~~~~~~~~l~~~l~~~L~~~~~g~ 280 (2602)
++++++.+.... .. ...++..+..++..+++ ... .+.+++++.++++++.+.+.|.+ ++|+
T Consensus 370 ~~~l~~~l~k~~-------~~-~~~s~~~~Q~~~~~~l~~p~~~~~~y~~~~~~~~~i~~~~~~r~~~l~~~L~~-~~gi 440 (534)
T PLN02231 370 TSDVREQIYKVA-------SV-NLCSNISGQILASLVMSPPKPGDESYESYMAEKDGILSSLARRAKTLEDALNS-LEGV 440 (534)
T ss_pred CHHHHHHHHHHH-------hh-hcCCChHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCc
Confidence 455665554322 01 12334455555555552 111 22345678889999999999987 6788
Q ss_pred EEeCCCCCCCCceEEEE--E--ccc----------ChhH-HHHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCC
Q psy15216 281 YINGDMNNRIPHNLNIS--F--NFI----------EGES-LLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELA 342 (2602)
Q Consensus 281 ~l~~~~~~~~~~~~~~~--~--~~~----------~~~~-~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~ 342 (2602)
.+..+... .+++ + +.. ..+. +...| .||.+.||..|... ..
T Consensus 441 ~~~~p~Gg-----fylw~~l~lp~~~~~~~~~~~~~~d~~~~~~Ll~~~GV~vvPGs~Fg~~----------------~g 499 (534)
T PLN02231 441 TCNKAEGA-----MYLFPRIHLPQKAIKAAEAAKTAPDAFYCKRLLNATGIVVVPGSGFGQV----------------PG 499 (534)
T ss_pred eecCCCee-----eEEeccccCcHHHHHHHhhcCCCcHHHHHHHHHHhcCEEEeCCcccCCC----------------CC
Confidence 77644321 2222 2 110 0112 22333 69999999887531 01
Q ss_pred CCeEEEecCCCCCHHHHHHHHHHHHhhhhhhhhhHhhhhcccC
Q psy15216 343 HSSIRFTIGRFTTEKEIDFTIKLLKMKEFFMSYSEKVLDHYEN 385 (2602)
Q Consensus 343 ~~~iRis~~~~~t~edid~li~~L~~~~~~~~y~~~~~~hy~~ 385 (2602)
..++|+++. .++++++..+++|.+ +++++|+.|++
T Consensus 500 ~~~~Rit~~--~~~e~l~eal~RL~~------~~~~~~~~~~~ 534 (534)
T PLN02231 500 TWHFRCTIL--PQEDKIPAIVSRLTE------FHKSFMDEFRD 534 (534)
T ss_pred CCeEEEEeC--CCHHHHHHHHHHHHH------HHHHHHHHhcC
Confidence 257999985 588999999988884 46677777763
|
|
| >PRK06836 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.3e-19 Score=232.32 Aligned_cols=312 Identities=13% Similarity=0.127 Sum_probs=212.4
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhC------CCCCcEEEeCCHHHHHHHHHHhhhhh
Q psy15216 1404 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIY------ADPREIIWTSGATESNNLAIKGAAHF 1477 (2602)
Q Consensus 1404 ~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g------~~~~~iv~t~gaT~al~~al~~l~~~ 1477 (2602)
++++.+.+++.+.+.......+ .|. ......++|+.++++++ +++++|++|+|++++++.++.++.
T Consensus 46 ~~~~~v~~a~~~~~~~~~~~~~--~y~----~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~-- 117 (394)
T PRK06836 46 PPPAAVKEALRELAEEEDPGLH--GYM----PNAGYPEVREAIAESLNRRFGTPLTADHIVMTCGAAGALNVALKAIL-- 117 (394)
T ss_pred CCCHHHHHHHHHHHhcCCcCcc--cCC----CCCCCHHHHHHHHHHHHHHhCCCCCcCcEEEeCChHHHHHHHHHHhc--
Confidence 5577888888877753211111 111 11235667788888773 478899999999999999999886
Q ss_pred hccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCC-CCcChhHHHhhccCCceEEEEeccccccccccC---hHH
Q psy15216 1478 YKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN-GLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILE 1553 (2602)
Q Consensus 1478 ~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~-~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~---l~~ 1553 (2602)
++||+|++++|.|+.+....+. .|++++.++.+++ +.+|+++++++++++++++++++|+||||.++| +++
T Consensus 118 --~~gd~Vli~~p~~~~~~~~~~~---~g~~v~~v~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~NPtG~~~~~~~~~~ 192 (394)
T PRK06836 118 --NPGDEVIVFAPYFVEYRFYVDN---HGGKLVVVPTDTDTFQPDLDALEAAITPKTKAVIINSPNNPTGVVYSEETLKA 192 (394)
T ss_pred --CCCCEEEEcCCCCccHHHHHHH---cCCEEEEEecCCccCcCCHHHHHhhcCcCceEEEEeCCCCCCCcCCCHHHHHH
Confidence 7999999999999997665544 4999999998765 679999999999999999999999999999999 667
Q ss_pred HHHHhhh------cCCEEEEecccccCc----cccc-CCCCCccEEEEccccccCCCc--eEEEEEecCCCCc--ccccc
Q psy15216 1554 IGELCRS------KGVIFHCDAAQAVGK----IDIN-IQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTR--IEAQI 1618 (2602)
Q Consensus 1554 I~~ia~~------~gi~vivD~a~~~g~----~~~~-l~~~~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~--l~~~~ 1618 (2602)
|+++|++ ||+++++|+++..-. .... ....+..+++.|++|.+|++| +||++++++..+. +....
T Consensus 193 l~~la~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~pGlRiG~~~~~~~~~~~~~~~~~~ 272 (394)
T PRK06836 193 LAALLEEKSKEYGRPIYLISDEPYREIVYDGAEVPYIFKYYDNSIVVYSFSKSLSLPGERIGYIAVNPEMEDADDLVAAL 272 (394)
T ss_pred HHHHHHHhhhccCCCeEEEEeccccccccCCCCCCChHHccCcEEEEecchhhccCcceeeEEEecCHHHhhhHHHHHHH
Confidence 7778888 899999999975211 1111 122334688889999888777 8999998764321 11100
Q ss_pred ccCCccccCC-CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEE--e
Q psy15216 1619 HGGGHEYGLR-SGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISF--N 1695 (2602)
Q Consensus 1619 ~g~~~~~~~~-~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~--~ 1695 (2602)
... .... ....+...+.++...+.. . ....++.+.++.+.+.|.+ . |+.+..+.. ..+++. +
T Consensus 273 ~~~---~~~~~~~~~~~~~q~~~~~~l~~---~--~~~~~~~~~r~~l~~~L~~-~-g~~~~~~~g-----g~~~~~~~~ 337 (394)
T PRK06836 273 VFA---NRILGFVNAPALMQRVVAKCLDA---T--VDVSIYKRNRDLLYDGLTE-L-GFECVKPQG-----AFYLFPKSP 337 (394)
T ss_pred HHH---hhccccccCCHHHHHHHHHHhCC---h--HHHHHHHHHHHHHHHHHHh-C-CCEeecCCc-----eEEEEEeCC
Confidence 000 0000 012333334444333331 1 1234566677888888876 3 555543221 222222 3
Q ss_pred cCCcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1696 FIEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1696 ~~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
..+..++...| +||.+.+|..|..+ +++||+++ .+.++++..++.|++
T Consensus 338 ~~~~~~~~~~l~~~gv~v~~g~~f~~~-------------------~~iRi~~~--~~~~~~~~~i~~l~~ 387 (394)
T PRK06836 338 EEDDVAFCEKAKKHNLLLVPGSGFGCP-------------------GYFRLSYC--VDTETIERSLPAFEK 387 (394)
T ss_pred CCCHHHHHHHHHhCCEEEECchhcCCC-------------------CeEEEEec--CCHHHHHHHHHHHHH
Confidence 33456666555 79999998776432 78999998 378999999999987
|
|
| >PRK13580 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.6e-19 Score=225.07 Aligned_cols=357 Identities=16% Similarity=0.160 Sum_probs=248.2
Q ss_pred CcccHHHHHHHHHhcCCCccccceeeeeceeeeccCCCCCCCHHHHHHHHHHHhhcc--CCCCCccchhHHHHHHHHHHH
Q psy15216 1365 SPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDATTPIDPRVVDKMIPYLRVQF--GNPASRNHIYGWTAEKAIEKA 1442 (2602)
Q Consensus 1365 ~~~~~~~v~~aL~~~g~~~~~~ei~~iP~~~v~L~~~~~~~~~~v~eal~~~l~~~~--~np~~~~~~~~~~~~~~~~~l 1442 (2602)
||+-+..+.+.++.+ ...+.++|.. .-.++.+.+++...+.+.+ ++|+...|........+...+
T Consensus 34 d~~~~~~~~~e~~rq-----~~~l~LiasE--------N~~s~~v~~a~~s~l~nkyaeg~pg~ryy~g~~~~d~ie~l~ 100 (493)
T PRK13580 34 EPRIAEAIRQELADQ-----RSSLKLIASE--------NYSSLAVQLAMGNLLTDKYAEGTPGHRFYAGCQNVDTVEWEA 100 (493)
T ss_pred CHHHHHHHHHHHHHH-----hcCceEeccc--------ccCCHHHHHHhcccccccCcCCCCCccccCCCchHHHHHHHH
Confidence 455555555554332 3445566643 3556688889888887754 678776666666667777788
Q ss_pred HHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccC-------------------------------CCEEEEcCCC
Q psy15216 1443 RNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKR-------------------------------GKHIITVQTE 1491 (2602)
Q Consensus 1443 r~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~-------------------------------gd~Vlv~~~~ 1491 (2602)
.++..++||++..+|-. .|++.|+..++.+++ +| ||+|+..+..
T Consensus 101 ~~ra~~lf~a~~anvqp-~Sg~~An~~v~~all----~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~gd~i~~l~l~ 175 (493)
T PRK13580 101 AEHAKELFGAEHAYVQP-HSGADANLVAFWAIL----AHKVESPALEKLGAKTVNDLTEEDWEALRAELGNQRLLGMSLD 175 (493)
T ss_pred HHHHHHHhCCCcccccC-CCcHHHHHHHHHHHh----cccccCcchhccccccccccchhhhhhhhccCCCCEEEeecCC
Confidence 89999999998766644 366888999999987 43 7999999888
Q ss_pred CcchHHHHHHHHhCC--cEEEEeccCC-CCCcChhHHHhhccCCceEEEEeccccccccccChHHHHHHhhhcCCEEEEe
Q psy15216 1492 HKSVLDSIRKLENDG--FRVTYLKPKN-NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCD 1568 (2602)
Q Consensus 1492 ~~s~~~~~~~~~~~G--~~v~~v~~~~-~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~~ia~~~gi~vivD 1568 (2602)
+..+..........| ...+..++++ ++.+|++++++.++++++.|+++|.+|..+ ..|+++|.++|++||+++++|
T Consensus 176 ~GGHlthg~~~n~~~~~~~~~~y~vd~~~g~iD~d~l~~~~~~~~plvii~g~S~~~~-~~dl~~i~eia~~~gA~L~VD 254 (493)
T PRK13580 176 SGGHLTHGFRPNISGKMFHQRSYGVDPDTGLLDYDEIAALAREFKPLILVAGYSAYPR-RVNFAKLREIADEVGAVLMVD 254 (493)
T ss_pred CCCeeecCcccchhhheeeeEecccCcccCccCHHHHHHHHhhcCCEEEEeCccccCC-CcCHHHHHHHHHHcCCEEEEE
Confidence 766533221111112 4455555664 678999999999999999999999999844 779999999999999999999
Q ss_pred cccccCcccccCC------CCCccEEEEcccc-ccCCCceEEEEEecCCCCccccccccCCccccCCCCCcchhHHHHHH
Q psy15216 1569 AAQAVGKIDINIQ------NYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMG 1641 (2602)
Q Consensus 1569 ~a~~~g~~~~~l~------~~~~D~~v~S~~K-~~gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~ 1641 (2602)
+||++|.+..+.. ..++|++++|+|| ++||.| |++++++++.+.+... ..+..|++..+.++|..
T Consensus 255 ~AH~~Gligg~~~~~~~~~~~~~D~vtgT~hKaL~GP~G-G~I~~~~~l~~~L~~a-------~P~i~gg~l~p~iAA~a 326 (493)
T PRK13580 255 MAHFAGLVAGKVFTGDEDPVPHADIVTTTTHKTLRGPRG-GLVLAKKEYADAVDKG-------CPLVLGGPLPHVMAAKA 326 (493)
T ss_pred CchhhceeccccchhhcCCCCCCcEEEeCChhhccCCCe-EEEEecHHHHHHHhhC-------CCcccCCCccHHHHHHH
Confidence 9999998765441 1268999999999 669997 9999998766555211 12334567777888777
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecCC--cHHHHHhc--CCEEEccccc
Q psy15216 1642 EAFRLAR-IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIE--GESLLMAI--KDIAVSSGSA 1716 (2602)
Q Consensus 1642 ~aL~~~~-~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~L--~gI~v~~g~~ 1716 (2602)
.++.... .....++++..++.++|.+.|.+ .|+.+..... ..++..+.+.... ...+...| .||.+.+-..
T Consensus 327 vAl~e~~~~ef~~y~~~l~~Na~~La~~L~~--~G~~vv~ggT--dshIV~V~lg~~~~~g~~a~~~L~e~GI~vn~i~~ 402 (493)
T PRK13580 327 VALAEARTPEFQKYAQQVVDNARALAEGFLK--RGARLVTGGT--DNHLVLIDVTSFGLTGRQAESALLDAGIVTNRNSI 402 (493)
T ss_pred HHHHHHhCccHHHHHHHHHHHHHHHHHHHHh--cCCCccCCCC--CCCEEEEEeCCHHHHHHHHHHHHHHCCeEEccccC
Confidence 7777443 33467889999999999999987 5766642111 1234444443222 22333345 7888875443
Q ss_pred cCCCCCChhHHHHHcCCCccccCCeEEEecCCCC----CHHHHHHHHHHHHHh
Q psy15216 1717 CTSASLEPSYVLRALGCNDELAHSSIRFTIGRFT----TEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1717 ~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~----t~edid~li~~L~~~ 1765 (2602)
+..+ ........|||++...+ +.+||+++++.|.+.
T Consensus 403 Ptvp-------------~g~~~~srLRIg~~A~ttrg~teedi~~iad~l~~~ 442 (493)
T PRK13580 403 PSDP-------------NGAWYTSGIRLGTPALTTLGMGSDEMDEVAELIVKV 442 (493)
T ss_pred CCCC-------------CCCCCCceEEeccchhhhcCCCHHHHHHHHHHHHHH
Confidence 3322 00011367999988744 689999999999863
|
|
| >TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.9e-19 Score=226.99 Aligned_cols=271 Identities=17% Similarity=0.166 Sum_probs=199.1
Q ss_pred HHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCC
Q psy15216 43 IEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNG 122 (2602)
Q Consensus 43 ~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~ 122 (2602)
..++|+++++++|.++++|++|+|+++++.+++.++ .+| .|++++|.|+++...+. ..|++++.++
T Consensus 49 ~~~lr~~la~~~~~~~~~i~~t~G~~~~i~~~~~~l-----~~g-~vl~~~p~y~~~~~~~~---~~g~~~~~~~----- 114 (330)
T TIGR01140 49 YDELRAAAAAYYGLPAASVLPVNGAQEAIYLLPRLL-----APG-RVLVLAPTYSEYARAWR---AAGHEVVELP----- 114 (330)
T ss_pred HHHHHHHHHHHhCCChhhEEECCCHHHHHHHHHHHh-----CCC-eEEEeCCCcHHHHHHHH---HcCCEEEEeC-----
Confidence 378899999999998899999999999999987664 467 68999999888766554 4599998887
Q ss_pred ccChHHHHhhccCCceEEEEecccCccccccc---HHHHHHHHHhcCCEEEEecccccccccccCC----CCCccEEEec
Q psy15216 123 LITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQAVGKIDINIQ----NYKVDLMSFS 195 (2602)
Q Consensus 123 ~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~---l~~I~~la~~~g~~livD~a~a~g~~~~dl~----~~~~D~~~~S 195 (2602)
|++.+++.+ .+++++++++|+||||.++| +++|+++|+++|+++|+|++|.......++. ..+.++++.|
T Consensus 115 --d~~~l~~~~-~~~~~v~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~i~~~S 191 (330)
T TIGR01140 115 --DLDRLPAAL-EELDVLVLCNPNNPTGRLIPPETLLALAARLRARGGWLVVDEAFIDFTPDASLAPQAARFPGLVVLRS 191 (330)
T ss_pred --CHHHHHhhc-ccCCEEEEeCCCCCCCCCCCHHHHHHHHHHhHhcCCEEEEECcccccCCccchhhHhccCCCEEEEEe
Confidence 789999988 56889999999999999999 5567788899999999999986332111211 2245688999
Q ss_pred cccccCCCC--cEEEEEecCCCCcccceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy15216 196 AHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGL 273 (2602)
Q Consensus 196 ~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L 273 (2602)
+||.+|++| +||+++++++++.+.+... ..+.+.++..++...++. ..+.+..+++++.+++.+.+.|
T Consensus 192 ~SK~~g~~G~R~G~i~~~~~~~~~l~~~~~---------~~~~s~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~l~~~L 261 (330)
T TIGR01140 192 LTKFFGLAGLRLGFVVAHPALLARLREALG---------PWTVNGPARAAGRAALAD-TAWQAATRARLAAERARLAALL 261 (330)
T ss_pred cchhhcCchhhhhheeCCHHHHHHHHhcCC---------CCCchHHHHHHHHHHHhc-hHHHHHHHHHHHHHHHHHHHHH
Confidence 999999888 6999999887777665431 223455555555455541 2334677888899999999999
Q ss_pred hhccCceEEeCCCCCCCCceEEEEEcccChhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecC
Q psy15216 274 MESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIG 351 (2602)
Q Consensus 274 ~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~ 351 (2602)
.+ .+.+++.++ ...++++...+..++.+.| +||.+.+|..|... ..+++||+++
T Consensus 262 ~~-~~~~~~~~~------~~~f~~~~~~~~~~l~~~l~~~gi~v~pg~~f~~~-----------------~~~~iRi~~~ 317 (330)
T TIGR01140 262 AR-LGGLEVVGG------TALFLLVRTPDAAALHEALARRGILIRDFDNFPGL-----------------DPRYLRFALP 317 (330)
T ss_pred Hh-CCCceECCC------CCeEEEEEcCCHHHHHHHHHHCCEEEEECCCCCCC-----------------CCCEEEEEec
Confidence 87 555554321 1233444444556777777 89999999876321 1368999998
Q ss_pred CCCCHHHHHHHHHHHH
Q psy15216 352 RFTTEKEIDFTIKLLK 367 (2602)
Q Consensus 352 ~~~t~edid~li~~L~ 367 (2602)
. ..++ ++++.+|+
T Consensus 318 ~--~~~~-~~~~~~l~ 330 (330)
T TIGR01140 318 T--DEEN-DRLEEALA 330 (330)
T ss_pred C--HHHH-HHHHHhhC
Confidence 3 3344 88888774
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella. |
| >PRK05839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.7e-19 Score=228.26 Aligned_cols=310 Identities=14% Similarity=0.021 Sum_probs=205.8
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhC--CCCCcEEEeCCHHHHHHHHHHhcccccccC
Q psy15216 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIY--ADPREIIWTSGATESNNLAIKGAAHFYKKR 85 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g--~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~ 85 (2602)
++|+.+.+++.+.......++.. .....+.+.+.+++++.+| +++++|++|+|+++|+..++.++.. .++
T Consensus 37 ~~~~~~~~a~~~~~~~~~~Y~~~------~G~~~lr~aia~~l~~~~g~~~~~~~I~it~G~~~al~~~~~~~~~--~~~ 108 (374)
T PRK05839 37 ETPKFIQDALKNNAHLLNKYPKS------AGEESLREAQRGFFKRRFKIELKENELIPTFGTREVLFNFPQFVLF--DKQ 108 (374)
T ss_pred CCCHHHHHHHHHHhhccCCCCCC------CCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHHhc--CCC
Confidence 45677777777655433333322 1112344445555555557 5788999999999999998887640 147
Q ss_pred CCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCC--CccChHHHHhhccCCceEEEEecccCcccccccH---HHHHH
Q psy15216 86 GKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN--GLITLSQLEEKICSDTILVSVMLVNNEIGVIQPI---LEIGE 160 (2602)
Q Consensus 86 gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~--~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l---~~I~~ 160 (2602)
||.|+++.|.|+.+...+... |++++.++.+.+ +.+|+.+. .+ ++++++++++||||||.+++. ++|++
T Consensus 109 gd~vlv~~P~y~~~~~~~~~~---g~~v~~v~~~~~~~~~~d~~~~--~~-~~~k~v~i~nP~NPTG~~~s~~~l~~i~~ 182 (374)
T PRK05839 109 NPTIAYPNPFYQIYEGAAIAS---RAKVLLMPLTKENDFTPSLNEK--EL-QEVDLVILNSPNNPTGRTLSLEELIEWVK 182 (374)
T ss_pred CCEEEECCCCchhhHHHHHhc---CCEEEEeecccccCCcCCcchh--hh-ccccEEEEeCCCCCcCcccCHHHHHHHHH
Confidence 899999999999988887665 999999998643 44555433 23 579999999999999999994 55677
Q ss_pred HHHhcCCEEEEecccccccc--cc-cC---------CCCCccEEEeccccccCCCC--cEEEEEecCCCCcccceecCCC
Q psy15216 161 LCRSKGVIFHCDAAQAVGKI--DI-NI---------QNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGG 226 (2602)
Q Consensus 161 la~~~g~~livD~a~a~g~~--~~-dl---------~~~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g~~ 226 (2602)
+|++||+++|+|++++.-.. +. .+ ...+.-+++.|++|.||.+| +||++.++++++.+.....
T Consensus 183 ~~~~~~~~ii~DE~Y~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~ii~~~~~~~~~~~~~~--- 259 (374)
T PRK05839 183 LALKHDFILINDECYSEIYENTPPPSLLEASILVGNESFKNVLVINSISKRSSAPGLRSGFIAGDASILKKYKAYRT--- 259 (374)
T ss_pred HHHHcCCEEEeccchhhcccCCCCCCHhhhhcccCccccCcEEEEeccccccCCccceeEEEecCHHHHHHHHHHHh---
Confidence 78899999999999763210 10 11 11223477889999988888 8999998877766643321
Q ss_pred ccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcccChhHH
Q psy15216 227 HEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESL 306 (2602)
Q Consensus 227 ~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 306 (2602)
...+..+.....++..++. ...++++.++++.++++++.+.| ++. .+ ..+.++++...+..++
T Consensus 260 ----~~~~~~~~~~q~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~l-----~~~--~p-----~gg~fi~~~~~~~~~~ 322 (374)
T PRK05839 260 ----YLGCASPLPLQKAAAVAWL-DDEHAEFFRNIYAKNLKLAREIL-----GIT--IP-----PATFYVWLPVDNDEEF 322 (374)
T ss_pred ----hcCCCCChHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHHHhc-----CCC--CC-----CeeEEEEEeCCChHHH
Confidence 1112334444444444553 23455666777777777666654 111 11 2334455544455666
Q ss_pred HHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 307 LMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 307 ~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
...+ +||.+.+|..+... ....+++||+++. +++++...+++|++
T Consensus 323 ~~~l~~~~gi~v~pg~~f~~~---------------~~~~~~iRis~~~--~~~~~~~~l~~l~~ 370 (374)
T PRK05839 323 TKKLYQNEGIKVLPGSFLGRN---------------GIGKGYVRIALVY--DTPKLEKALEIIKT 370 (374)
T ss_pred HHHHHHHCCEEEeCchhhCCC---------------CCCCCeEEEEecC--CHHHHHHHHHHHHH
Confidence 6665 69999998755321 0113899999974 68999999999885
|
|
| >COG0822 IscU NifU homolog involved in Fe-S cluster formation [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4e-21 Score=205.51 Aligned_cols=96 Identities=66% Similarity=1.032 Sum_probs=88.3
Q ss_pred hhhhhhhhhhhhhhcCCCCcCcccCCCCcceeeeecCCCCccEEEEEEEEcCCCcEEeeeeeccccchhHhhHHHHHHHH
Q psy15216 1766 EFFMSYSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKTYGCGSAIASSSLVTEWV 1845 (2602)
Q Consensus 1766 ~~~~~y~~~i~dh~~~p~~~g~~~~~~~~~~~~~~~~~~cgd~~~~~~~~~~~~~i~~~~~~~~gc~~~~a~~s~~~~~~ 1845 (2602)
.++++|+++|++||.||+|+|.+++.+ ++.+++++|+|||.|+|||+|+ +|+|+|++|+|+||+++||||||+||++
T Consensus 2 ~~~~~y~~~Ildh~~np~~~g~l~~~~--~~~~~~~~~~CGD~i~l~lkv~-~~~I~d~~F~~~GC~is~ASss~~te~v 78 (150)
T COG0822 2 NLDDLYSEKILDHYKNPRNVGVLDDAD--VGVGHVGAPACGDVITLYLKVD-NGVIEDAKFKGFGCAISIASSSMMTELV 78 (150)
T ss_pred cHHHHHHHHHHHHhcCCCcCCccCccc--hhccccCCCCccceEEEEEEEc-CCEEEEEEeeecCcHHHHHHHHHHHHHH
Confidence 368899999999999999999999776 5778899999999999999997 8899999999999999999999999999
Q ss_pred cCCChhhhhccc--ccchhhh
Q psy15216 1846 KGKTLDEAMSIK--NTDIAEE 1864 (2602)
Q Consensus 1846 ~g~~~~~~~~i~--~~~i~~~ 1864 (2602)
+|||++||++++ ...+...
T Consensus 79 ~Gkti~EAl~i~~~~~~m~~~ 99 (150)
T COG0822 79 KGKTLDEALKITEAFTDMAKE 99 (150)
T ss_pred cCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999 5555553
|
|
| >TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.6e-19 Score=225.40 Aligned_cols=334 Identities=15% Similarity=0.091 Sum_probs=226.1
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCC
Q psy15216 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK 87 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd 87 (2602)
..+...++++.+.+.+.+.+ + ..+..+++++++++++|.+ ++++++|+|+|+++++.++. ++|||
T Consensus 8 ~~~~~e~~a~~~~~~~~~~~--------~--~g~~~~~~e~~la~~~g~~--~~v~~~sgt~aL~~~l~al~---~~pGd 72 (376)
T TIGR02379 8 PVTGQELEYIAEAISEGKLS--------G--DGPFSRRCETWLENRTGTK--KALLTPSCTAALEMAALLLD---IQPGD 72 (376)
T ss_pred CCCHHHHHHHHHHHHcCCcc--------C--CcHHHHHHHHHHHHHhCCC--eEEEeCCHHHHHHHHHHHcC---CCCcC
Confidence 34567788888888653211 0 1135788899999999864 79999999999999998874 48999
Q ss_pred EEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCC-CccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHhcC
Q psy15216 88 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN-GLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKG 166 (2602)
Q Consensus 88 ~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~-~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~~g 166 (2602)
+|++++++|+++..++... |+++++++++++ +.+|+++++++++++|++|+. +|++|...|+++|.++|++||
T Consensus 73 ~Viv~~~t~~~~~~~~~~~---G~~~v~vd~d~~~~~~d~~~le~~i~~~tk~Iip---~~~~G~~~d~~~I~~la~~~~ 146 (376)
T TIGR02379 73 EVIMPSYTFVSTANAFVLR---GAKIVFVDIRPDTMNIDETLIESAITHRTKAIVP---VHYAGVACDMDTIMALANKHQ 146 (376)
T ss_pred EEEECCCCcHHHHHHHHHc---CCEEEEEecCCCcCCCCHHHHHHhcCcCceEEEE---eCCCCCccCHHHHHHHHHHCC
Confidence 9999999999988877655 999999999875 679999999999999999874 556999999999999999999
Q ss_pred CEEEEecccccccccccCCCCC--ccEEEecccc--cc--CCCCcEEEEEe-cCCCCcccceecCCCcc-c-------cc
Q psy15216 167 VIFHCDAAQAVGKIDINIQNYK--VDLMSFSAHK--IY--GPKGIGALYIR-RNPRTRIEAQIHGGGHE-Y-------GL 231 (2602)
Q Consensus 167 ~~livD~a~a~g~~~~dl~~~~--~D~~~~S~~K--~~--Gp~G~G~l~~~-~~~~~~l~~~~~g~~~~-~-------~~ 231 (2602)
+++|+|++|+.|.. .+....+ .|+.++|||+ .+ |+.| |+++.+ +++.++++++...|... . .+
T Consensus 147 i~vIeDaa~~~g~~-~~~~~~g~~~~~~~fSf~~~K~l~~g~~g-G~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 224 (376)
T TIGR02379 147 LFVIEDAAQGVMST-YKGRALGSIGHLGTFSFHETKNYTSGGEG-GALLINDQAFIERAEIIREKGTNRSQFFRGEVDKY 224 (376)
T ss_pred CEEEEECccccCCc-cCCcccCCCCCEEEEeCCCCCcCcccCCc-eEEEECCHHHHHHHHHHHHhCCCCccccccCCCcc
Confidence 99999999998864 2333333 2788888876 23 4465 666555 66777776654333211 0 00
Q ss_pred ---cccCcchhHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHhhccC--c-eEEeCCCCCC--CCceEEEEEcc-c
Q psy15216 232 ---RSGTLATHQIVGMGEAFRL-ARIEMKEELKRILFLQKRLYNGLMESIE--E-IYINGDMNNR--IPHNLNISFNF-I 301 (2602)
Q Consensus 232 ---~~gt~~~~~~~al~~al~~-~~~~~~~~~~~~~~l~~~l~~~L~~~~~--g-~~l~~~~~~~--~~~~~~~~~~~-~ 301 (2602)
..|..--++- +.+|+-. ....++++.++.++.++++.+.|.. ++ + +.+...+... ..+.+.+.++. .
T Consensus 225 ~~~~~g~n~~~~~--~~Aa~g~~qL~~l~~~~~~r~~~~~~y~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 301 (376)
T TIGR02379 225 TWRDIGSSYLPSE--LQAAYLWAQLEQADRINQDRLATWQLYQDALKP-LEEKGIIELPSIPNGCQHNAHMFYIKLKDED 301 (376)
T ss_pred eeeeecccCCccH--HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcc-CCcCCeeeCCCCCCCCeeeeEEEEEEECCcC
Confidence 0111100111 1122221 1245678888888888888888865 33 2 2332212111 12233344432 3
Q ss_pred ChhHHHHHh--CCeEEcccccCCCCCCChHHHHH-----HcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 302 EGESLLMAI--KDIAVSSGSACTSASLEPSYVLR-----ALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 302 ~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~-----~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
+.+++...| +||..+. ++.+.+.++.+... .+...+......|.+++++..+++|+++++++|++.
T Consensus 302 ~r~~l~~~L~~~gI~~~~--~~~p~~~~~~~~~~~~~~~~~p~~~~~~~~~l~LP~~~~l~~~~~~~i~~~i~~~ 374 (376)
T TIGR02379 302 DRNELIKYLKEQEIMAVF--HYVPLHSSPAGRYFGRFHGEDIYTTKESERLVRLPLYYGLSKEDQARVIQTICDY 374 (376)
T ss_pred CHHHHHHHHHHCCCCccc--cCcCCCcchhHHhhCCCCCCChHHHHHHhceEEccCCCCCCHHHHHHHHHHHHHH
Confidence 577888888 6887664 34455555543211 111122333578999999999999999999999863
|
This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041). |
| >COG0822 IscU NifU homolog involved in Fe-S cluster formation [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.1e-21 Score=204.72 Aligned_cols=95 Identities=66% Similarity=1.040 Sum_probs=87.6
Q ss_pred hhhhhhHhhhhcccCCCCCCCCCCCCCcceeeeeCCCCcccEEEEEEEEcCCCceEeeeeeccccchhHhhHHHHHHHHc
Q psy15216 371 FFMSYSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKTYGCGSAIASSSLVTEWVK 450 (2602)
Q Consensus 371 ~~~~y~~~~~~hy~~p~n~g~~~~~~~~~~~~~~~~~~cgd~~~~~~~~~~~~~i~~~~~~~~gc~~~~a~~s~~~~~~~ 450 (2602)
+|.+|++++++||.||+|+|.+++++ ++.+++++|+|||.|+|+|+|+ +|+|+|++|+|+||+++|||||++||+|+
T Consensus 3 ~~~~y~~~Ildh~~np~~~g~l~~~~--~~~~~~~~~~CGD~i~l~lkv~-~~~I~d~~F~~~GC~is~ASss~~te~v~ 79 (150)
T COG0822 3 LDDLYSEKILDHYKNPRNVGVLDDAD--VGVGHVGAPACGDVITLYLKVD-NGVIEDAKFKGFGCAISIASSSMMTELVK 79 (150)
T ss_pred HHHHHHHHHHHHhcCCCcCCccCccc--hhccccCCCCccceEEEEEEEc-CCEEEEEEeeecCcHHHHHHHHHHHHHHc
Confidence 68999999999999999999999777 5678889999999999999996 88999999999999999999999999999
Q ss_pred CCChhhhhhcc--ccchhhh
Q psy15216 451 GKTLDEAMSIK--NTDIAEE 468 (2602)
Q Consensus 451 g~~~~e~~~i~--~~~i~~~ 468 (2602)
|||++||++++ ...+...
T Consensus 80 Gkti~EAl~i~~~~~~m~~~ 99 (150)
T COG0822 80 GKTLDEALKITEAFTDMAKE 99 (150)
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 99999999999 5555543
|
|
| >TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.3e-19 Score=230.29 Aligned_cols=334 Identities=16% Similarity=0.143 Sum_probs=224.9
Q ss_pred CCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCE
Q psy15216 1405 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKH 1484 (2602)
Q Consensus 1405 ~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~ 1484 (2602)
...+.++++.+.+...+.+++ ....++|+++++++|.+ +.++++|+|+|+++++.++. +++||+
T Consensus 8 ~~~~~~~~v~~~~~~~~~~~g-----------~~~~~le~~la~~~g~~--~~v~~~sgt~al~~~l~al~---~~~Gd~ 71 (380)
T TIGR03588 8 IDQDDIDAVVEVLKSDFLTQG-----------PTVPAFEEALAEYVGAK--YAVAFNSATSALHIACLALG---VGPGDR 71 (380)
T ss_pred CCHHHHHHHHHHHhcCCccCC-----------hhHHHHHHHHHHHHCCC--eEEEEcCHHHHHHHHHHHcC---CCCCCE
Confidence 345567778777765321111 23578999999999975 45667789999999999983 389999
Q ss_pred EEEcCCCCcchHHHHHHHHhCCcEEEEeccCC-CCCcChhHHHhhcc----CCceEEEEeccccccccccChHHHHHHhh
Q psy15216 1485 IITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NGLITLSQLEEKIC----SDTILVSVMLVNNEIGVIQPILEIGELCR 1559 (2602)
Q Consensus 1485 Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~-~~~id~d~l~~~i~----~~t~lv~l~~~~n~tG~~~~l~~I~~ia~ 1559 (2602)
|++++++|+++..++... |++++++++++ ++.+|+++++++++ ++|++|+++| ++|...|+++|.++|+
T Consensus 72 Viv~~~~~~~~~~~~~~~---G~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~t~~v~~~~---~~G~~~~~~~i~~l~~ 145 (380)
T TIGR03588 72 VWTTPITFVATANCALYC---GAKVDFVDIDPDTGNIDEDALEKKLAAAKGKLPKAIVPVD---FAGKSVDMQAIAALAK 145 (380)
T ss_pred EEeCCcchHHHHHHHHHc---CCEEEEEecCCCcCCcCHHHHHHHhhcccCCCceEEEEeC---CCCccCCHHHHHHHHH
Confidence 999999999987666554 99999999975 67799999999999 7899988766 4899999999999999
Q ss_pred hcCCEEEEecccccCcccccCCCCCc----cEEEEccc--cccCCCceEEEEEe-cCCCCccccccccCCcc--------
Q psy15216 1560 SKGVIFHCDAAQAVGKIDINIQNYKV----DLMSFSAH--KIYGPKGIGALYIR-RNPRTRIEAQIHGGGHE-------- 1624 (2602)
Q Consensus 1560 ~~gi~vivD~a~~~g~~~~~l~~~~~----D~~v~S~~--K~~gp~G~G~l~~~-~~~~~~l~~~~~g~~~~-------- 1624 (2602)
+||+++|+|++|++|.. ++...++. |+.++|+| |+++....|+++.+ +++.+++++....+...
T Consensus 146 ~~~~~lI~D~a~a~g~~-~~~~~~g~~~~~d~~~~S~~~~K~~~~~~GG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 224 (380)
T TIGR03588 146 KHGLKIIEDASHALGAE-YGGKPVGNCRYADATVFSFHPVKIITTAEGGAVTTNDEELAERMRLLRSHGITKDPLLFEKQ 224 (380)
T ss_pred HcCCEEEEECCCcccCc-cCCEeCCCccccceEEEecCCCCcccccCceEEEECCHHHHHHHHHHHHCCCCCCccccccc
Confidence 99999999999999875 44455555 99999998 75543234666665 33444444322222110
Q ss_pred ----ccCCCCCcch-hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCC--CCCceEEEEEec
Q psy15216 1625 ----YGLRSGTLAT-HQIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNN--RIPHNLNISFNF 1696 (2602)
Q Consensus 1625 ----~~~~~gt~~~-~~~~al~~aL~~~-~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~--~~~~~~~~~~~~ 1696 (2602)
..+..+...+ ..+..+.+++... ...++.+.++.+++.+++.+.|.. ++++.+..++.. ..+....+.++.
T Consensus 225 ~~~~~~~~~~~~g~n~~m~~l~aa~g~~qL~~l~~~~~~r~~~~~~~~~~L~~-~~~~~~~~~~~~~~~~~~~~~i~~~~ 303 (380)
T TIGR03588 225 DEGPWYYEQQELGFNYRMTDIQAALGLSQLKKLDRFVAKRREIAARYDRLLKD-LPYFTPLTIPLGSKSAWHLYPILLDQ 303 (380)
T ss_pred ccCcceeeeeccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCccCCCCCCCCEeEEEEEEEEECC
Confidence 1111111110 1112233333311 133688889999999999999987 677665433211 122333344432
Q ss_pred ---CCcHHHHHhc--CCEEEccccccCCCCCChhHHH----HHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1697 ---IEGESLLMAI--KDIAVSSGSACTSASLEPSYVL----RALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1697 ---~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~----~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
.+.+++...| +||.++... .+.+.++.+.. ..++..+......|+++++...|.+|+++++++|++
T Consensus 304 ~~~~~r~~l~~~L~~~gI~~~~~~--~~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l~~~dv~~i~~~l~~ 378 (380)
T TIGR03588 304 EFGCTRKEVFEALRAAGIGVQVHY--IPVHLQPYYRQGFGDGDLPSAENFYLAEISLPLHPALTLEQQQRVVETLRK 378 (380)
T ss_pred cCCCCHHHHHHHHHHCCCCcccCC--cccccChhhhccCCcCCCcHHHHHHhceEEcCCCCCCCHHHHHHHHHHHHH
Confidence 3567777777 788876443 23223332221 012222233447899999999999999999999986
|
This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species. |
| >PRK08133 O-succinylhomoserine sulfhydrylase; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.9e-19 Score=227.26 Aligned_cols=304 Identities=13% Similarity=0.101 Sum_probs=200.5
Q ss_pred hhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHH-HHHhCCcEE
Q psy15216 35 YGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIR-KLENDGFRV 113 (2602)
Q Consensus 35 ~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~-~~~~~G~~v 113 (2602)
+++...+..+++++.+|+++|++ .+++++|+++|+..++.++. ++||+|+++.+.|++....+. .+...|+++
T Consensus 55 y~r~~~p~~~~le~~la~l~g~~--~~v~~ssG~~Ai~~al~al~----~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~v 128 (390)
T PRK08133 55 YSRFTNPTVTMFQERLAALEGAE--ACVATASGMAAILAVVMALL----QAGDHVVSSRSLFGSTVSLFEKIFARFGIET 128 (390)
T ss_pred eECCCChHHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHHh----CCCCEEEEccCcchhHHHHHHHHHHHcCcEE
Confidence 34444567889999999999975 67889999999999998887 899999999999998877664 346679999
Q ss_pred EEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHhcCCEEEEecccccccccccCCCCCccEEE
Q psy15216 114 TYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMS 193 (2602)
Q Consensus 114 ~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~~g~~livD~a~a~g~~~~dl~~~~~D~~~ 193 (2602)
++++.+ |+++++++++++|++|++++|+||||.+.|+++|+++||++|+++++|++++.+.....+ ..++|+++
T Consensus 129 ~~vd~~-----d~~~l~~~i~~~tklV~ie~p~NptG~v~dl~~I~~la~~~gi~livD~t~~~~~~~~pl-~~g~Divv 202 (390)
T PRK08133 129 TFVDLT-----DLDAWRAAVRPNTKLFFLETPSNPLTELADIAALAEIAHAAGALLVVDNCFCTPALQQPL-KLGADVVI 202 (390)
T ss_pred EEECCC-----CHHHHHHhcCcCCeEEEEECCCCCCCCcCCHHHHHHHHHHcCCEEEEECCCcccccCCch-hhCCcEEE
Confidence 999864 789999999999999999999999999999999999999999999999998766543322 45789999
Q ss_pred eccccccCCCC--c-EEEEEecCCCCcccceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy15216 194 FSAHKIYGPKG--I-GALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLY 270 (2602)
Q Consensus 194 ~S~~K~~Gp~G--~-G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~ 270 (2602)
+|+||+++++| + |+++.+++.++++..... ....+++....+.+...++ .+..+.+++.+++..+.
T Consensus 203 ~S~sK~~~g~g~~~GG~vv~~~~~~~~~~~~~~-------~~g~~~~~~~a~~~l~gl~----tl~~R~~~~~~~a~~la 271 (390)
T PRK08133 203 HSATKYLDGQGRVLGGAVVGSKELMEEVFGFLR-------TAGPTLSPFNAWVFLKGLE----TLSLRMEAHSANALALA 271 (390)
T ss_pred eecceeecCCcceEeEEEEcCHHHHHHHHHHHH-------HhCCCCCHHHHHHHHcccc----hHHHHHHHHHHHHHHHH
Confidence 99999888777 3 677777655544432221 0111222222222222332 24445555566777777
Q ss_pred HHHhhccCceEEe-CCC--CC-----------CCCceEEEEEccc--ChhHHHHHhC--CeEEcccccCC----C---CC
Q psy15216 271 NGLMESIEEIYIN-GDM--NN-----------RIPHNLNISFNFI--EGESLLMAIK--DIAVSSGSACT----S---AS 325 (2602)
Q Consensus 271 ~~L~~~~~g~~l~-~~~--~~-----------~~~~~~~~~~~~~--~~~~~~~~L~--gI~v~~g~~~~----~---~~ 325 (2602)
+.|.+ .|++.-+ -|. +. ....++.|.+.+. ....+++.|+ .+.++-|..-+ | .|
T Consensus 272 ~~L~~-~p~v~~v~yp~l~~~p~~~~~~~~~~g~g~~~s~~l~~~~~~~~~f~~~l~l~~~~~slG~~~sl~~~p~~~~~ 350 (390)
T PRK08133 272 EWLEA-HPGVERVFYPGLPSHPQHELAKRQQKGGGAIVSFEVKGGREAAWRVIDATRLISITANLGDTKTTITHPATTTH 350 (390)
T ss_pred HHHHh-CCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEEcCCHHHHHHHHHhCCcceEeccCCCcceeeecCCCCCc
Confidence 77766 5665422 111 10 1122344444321 1335666663 44444442111 1 01
Q ss_pred -CChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHH
Q psy15216 326 -LEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLL 366 (2602)
Q Consensus 326 -~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L 366 (2602)
..+.-.....|+. ++.||+|+|..+.++-++.+-++|
T Consensus 351 ~~~~~~~~~~~gi~----~~liR~svGlE~~~dl~~dl~~al 388 (390)
T PRK08133 351 GRLSPEARAAAGIT----EGLIRVAVGLEDVADIKADLARGL 388 (390)
T ss_pred ccCCHHHHHhcCCC----CCeEEEEeCcCCHHHHHHHHHHHh
Confidence 1112223456765 388999999754444344444433
|
|
| >PLN02721 threonine aldolase | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.2e-19 Score=229.46 Aligned_cols=284 Identities=16% Similarity=0.210 Sum_probs=195.4
Q ss_pred HHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhcc-CCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCC
Q psy15216 1439 IEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKK-RGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN 1517 (2602)
Q Consensus 1439 ~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~-~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~ 1517 (2602)
..++|+.+++++|.+ .+++++++|+++..++.++. + +||+|++++++|.+.......+...|++++.++.+++
T Consensus 42 ~~~l~~~la~~~~~~--~~~~~~~Gs~a~~~~l~~~~----~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~ 115 (353)
T PLN02721 42 ALRLEEEMAKIFGKE--AALFVPSGTMGNLISVLVHC----DVRGSEVILGDNSHIHLYENGGISTLGGVHPRTVKNNED 115 (353)
T ss_pred HHHHHHHHHHHhCCc--eeEEecCccHHHHHHHHHHc----cCCCCeEEEcCccceehhcccchhhhcCceeEecCCCcC
Confidence 578999999999975 46777888888777777765 5 9999999999997655422233445999999998888
Q ss_pred CCcChhHHHhhcc-------CCceEEEEecc-ccccccccC---hHHHHHHhhhcCCEEEEecccccCcc---cccCC--
Q psy15216 1518 GLITLSQLEEKIC-------SDTILVSVMLV-NNEIGVIQP---ILEIGELCRSKGVIFHCDAAQAVGKI---DINIQ-- 1581 (2602)
Q Consensus 1518 ~~id~d~l~~~i~-------~~t~lv~l~~~-~n~tG~~~~---l~~I~~ia~~~gi~vivD~a~~~g~~---~~~l~-- 1581 (2602)
+.+|+++++++++ +++++|+++++ +||+|.++| +++|.++|++||+++++|++|.++.. ..+..
T Consensus 116 ~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~~~~np~G~~~~~~~l~~l~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~ 195 (353)
T PLN02721 116 GTMDLDAIEAAIRPKGDDHFPTTRLICLENTHANCGGRCLSVEYTDKVGELAKRHGLKLHIDGARIFNASVALGVPVHRL 195 (353)
T ss_pred CCcCHHHHHHHHHhccCCCCCcceEEEEeccccccCCccccHHHHHHHHHHHHHcCCEEEEEchhhhcchhhhCCCHHHH
Confidence 8899999999998 68999999875 677899888 67999999999999999999876531 11111
Q ss_pred CCCccEEEEccccccCCCceEEEEEecCCCCccccccccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15216 1582 NYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFL 1661 (2602)
Q Consensus 1582 ~~~~D~~v~S~~K~~gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l 1661 (2602)
..++|+++.|+||+++++..|+++.++++++.+...... ..+++......+. .++..+....+. .++..++
T Consensus 196 ~~~~d~~~~s~sK~l~~~~G~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~-~~~~~l~~~~~~-~~~~~~~ 266 (353)
T PLN02721 196 VKAADSVSVCLSKGLGAPVGSVIVGSKSFIRKAKRLRKT-------LGGGMRQVGVLAA-AALVALQENVPK-LEDDHKK 266 (353)
T ss_pred hhhCCEEEEecccccCCceeeEEecCHHHHHhHHHHHHh-------cCCCeehhHHHHH-HHHHHHHHHHHH-HHHHHHH
Confidence 225788899999976644224566677666654433211 0112222222221 122212222222 3344567
Q ss_pred HHHHHHHHhhcCCcEEE-eCCCCCCCCceEEEEEec---CCcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCc
Q psy15216 1662 QKRLYNGLMESIEEIYI-NGDMNNRIPHNLNISFNF---IEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCND 1735 (2602)
Q Consensus 1662 ~~~l~~~L~~~~~gl~i-~~~~~~~~~~~~~~~~~~---~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~ 1735 (2602)
++++.+.|.+ ++++.+ ..++. .++..+.++. .+...+...| +||.++++.
T Consensus 267 ~~~l~~~L~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~L~~~gi~v~~~~-------------------- 322 (353)
T PLN02721 267 AKLLAEGLNQ-IKGLRVNVAAVE---TNIVYFDITDGSRITAEKLCKSLEEHGVLLMPGN-------------------- 322 (353)
T ss_pred HHHHHHHHHh-CCCcEEecCCcc---ceEEEEEccCCccccHHHHHHHHHhCCcEEecCC--------------------
Confidence 8899999987 667754 32221 2334444442 2455677666 789988652
Q ss_pred cccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1736 ELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1736 ~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
.+++|++++.+++.+|+++++++|++
T Consensus 323 ---~~~lR~~~~~~~~~~~i~~~~~~l~~ 348 (353)
T PLN02721 323 ---SSRIRVVTHHQISDSDVQYTLSCFQQ 348 (353)
T ss_pred ---CceEEEEecCcCCHHHHHHHHHHHHH
Confidence 16899999999999999999999986
|
|
| >PRK06425 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.4e-19 Score=225.61 Aligned_cols=275 Identities=16% Similarity=0.129 Sum_probs=195.9
Q ss_pred HHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCC
Q psy15216 1439 IEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNG 1518 (2602)
Q Consensus 1439 ~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~ 1518 (2602)
..++|+++++++|.++++|++|+|+++++..++. +. ++| .|++++|+|+.+...++.. |++++.++.+. .
T Consensus 42 ~~~lr~~ia~~~~~~~~~I~it~Gs~~~l~~~~~-~~----~~~-~vv~~~P~y~~y~~~~~~~---G~~v~~vp~~~-~ 111 (332)
T PRK06425 42 YTDIEDQIKIYTQGLKIKVLIGPGLTHFIYRLLS-YI----NVG-NIIIVEPNFNEYKGYAFTH---GIRISALPFNL-I 111 (332)
T ss_pred HHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHH-Hh----CCC-cEEEeCCChHHHHHHHHHc---CCeEEEEeCCc-c
Confidence 5789999999999999999999999999999986 44 566 5777799998887776666 99999999875 3
Q ss_pred CcChhHHHhhccCCceEEEEeccccccccccC---hHHHHHHhhhcCCEEEEecccccCcc----c-ccC-CCCCccEEE
Q psy15216 1519 LITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQAVGKI----D-INI-QNYKVDLMS 1589 (2602)
Q Consensus 1519 ~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~---l~~I~~ia~~~gi~vivD~a~~~g~~----~-~~l-~~~~~D~~v 1589 (2602)
.+|.+.+++ .++++|++++||||||.+++ +++|+++|++||+++|+|+++..-.. + ..+ ...+.-+++
T Consensus 112 ~~~~~~l~~---~~~k~v~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~DE~Y~~~~~~~~~~~~~~~~~~~~vi~~ 188 (332)
T PRK06425 112 NNNPEILNN---YNFDLIFIVSPDNPLGNLISRDSLLTISEICRKKGALLFIDEAFIDFVPNRAEEDVLLNRSYGNVIIG 188 (332)
T ss_pred cCcHHHHhh---cCCCEEEEeCCCCCcCCccCHHHHHHHHHHHHHcCCEEEEecchhccccccchhHHHHhccCCCEEEE
Confidence 356655543 48899999999999999999 56677788999999999999752211 1 111 122334777
Q ss_pred EccccccCCCc--eEEEEEecCCCCccccccccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15216 1590 FSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYN 1667 (2602)
Q Consensus 1590 ~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~ 1667 (2602)
.||+|.+|++| +||+++++++++.+..... ..+.+.....++. .. ......++.++.+++.++++.+
T Consensus 189 ~SfSK~~~l~GlRiGy~v~~~~li~~l~~~~~---------~~~~~~~~~~~l~-~~-~~~~~~~~~~~~~~~~r~~l~~ 257 (332)
T PRK06425 189 RSLTKILGIPSLRIGYIATDDYNMKISRKITE---------PWSVCDPAIDFIR-SI-DLDYVAKHSLDIMENERSYLIN 257 (332)
T ss_pred eecHHhcCCchhhheeeecCHHHHHHHHHcCC---------CCccCHHHHHHHH-Hh-hhHHHHHHHHHHHHHHHHHHHH
Confidence 89999999888 8999999877666553211 1122222211111 11 1122345677888889999999
Q ss_pred HHhhcCCcEEEeCCCCCCCCceEEEEEecCCcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEe
Q psy15216 1668 GLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFT 1745 (2602)
Q Consensus 1668 ~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls 1745 (2602)
.|.+ . ++.+..++. +.++++...+..++...| +||.++++..|... ..+++|||
T Consensus 258 ~L~~-~-g~~~~~~~~-----g~f~~~~~~~~~~~~~~l~~~gi~v~~~~~f~~~-----------------~~~~iRis 313 (332)
T PRK06425 258 NLEA-M-GFRAAGDPS-----ANFITFMIPDAHDFYSYLLKNGILVRLLDDYECL-----------------GEQYIRIA 313 (332)
T ss_pred HHHH-C-CCEECCCCC-----ceEEEEEcCCHHHHHHHHHHCCeEEEECCCCCCC-----------------CCCEEEEE
Confidence 9987 3 666543222 223344333566666665 89999999876432 12799999
Q ss_pred cCCCCCHHHHHHHHHHHHH
Q psy15216 1746 IGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1746 ~~~~~t~edid~li~~L~~ 1764 (2602)
++ +.+++++++++|++
T Consensus 314 ~~---~~~~~~~l~~al~~ 329 (332)
T PRK06425 314 IR---RRSFNIKLVNALRN 329 (332)
T ss_pred eC---CHHHHHHHHHHHHH
Confidence 98 78999999999986
|
|
| >PRK07590 L,L-diaminopimelate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.9e-19 Score=231.97 Aligned_cols=319 Identities=13% Similarity=0.113 Sum_probs=210.0
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHh------CCCCCcEEEeCCHHHHHHHHHHhcccc
Q psy15216 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI------YADPREIIWTSGATESNNLAIKGAAHF 81 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~------g~~~~~Iv~t~g~T~al~~~~~~l~~~ 81 (2602)
++|+.+.+++.+++.....++.. .+|.......++|+++|+++ ++++++|++|+|+++|+.+++ .+.
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~----~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~l~-~~~-- 119 (409)
T PRK07590 47 PLPPAVIEAMHKAVDEMGTAETF----RGYGPEQGYDFLREKIAENDYQARGCDISADEIFISDGAKCDTGNIL-DIF-- 119 (409)
T ss_pred CCCHHHHHHHHHHHhcccccCCc----cCCCCCCCCHHHHHHHHHHHHHhcCCcCChhhEEECCCHHHHHHHHH-Hhc--
Confidence 46778888888887642111110 11111223456778888775 568899999999999999864 344
Q ss_pred cccCCCEEEEcCCCCcccHHHHHHHHhCCcE-----------EEEeccCCC--CccChHHHHhhccCCceEEEEecccCc
Q psy15216 82 YKKRGKHIITVQTEHKSVLDSIRKLENDGFR-----------VTYLKPKNN--GLITLSQLEEKICSDTILVSVMLVNNE 148 (2602)
Q Consensus 82 ~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~-----------v~~v~~~~~--~~ld~e~l~~~i~~~tklv~i~~~~np 148 (2602)
.+||+|++++|.|+.+...++.. |.+ ++.++++.+ +.+|++ .+++|++++++|+||
T Consensus 120 --~~gd~V~v~~P~Y~~~~~~~~~~---g~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~------~~~~k~i~l~nP~NP 188 (409)
T PRK07590 120 --GPDNTIAVTDPVYPVYVDTNVMA---GRTGEANEDGRYSGIVYLPCTAENNFVPELP------EEKVDIIYLCFPNNP 188 (409)
T ss_pred --CCCCEEEEeCCCCcchHHHHHHc---CCcccccccccccceeEeecccccCCcccCc------ccCceEEEEeCCCCC
Confidence 69999999999999998877776 665 888887643 333322 268999999999999
Q ss_pred ccccccHH---HHHHHHHhcCCEEEEecccccc----cccccCCCC----CccEEEeccccccCCCC--cEEEEEecCCC
Q psy15216 149 IGVIQPIL---EIGELCRSKGVIFHCDAAQAVG----KIDINIQNY----KVDLMSFSAHKIYGPKG--IGALYIRRNPR 215 (2602)
Q Consensus 149 TG~~~~l~---~I~~la~~~g~~livD~a~a~g----~~~~dl~~~----~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~ 215 (2602)
||.+++.+ +|+++|++||+++|+|++|+.- ..+..+... +.-+++.||||.+|.+| +||++++++++
T Consensus 189 TG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~pGlRiG~~i~~~~li 268 (409)
T PRK07590 189 TGTVLTKEQLKAWVDYAKENGSLILFDAAYEAFISDPSLPHSIYEIEGARECAIEFRSFSKTAGFTGTRCAYTVVPKELK 268 (409)
T ss_pred cCCcCCHHHHHHHHHHHHHcCeEEEEEccchhhccCCCCCcchhhCCCcccceEEEecCccccCCcCceeEEEEcCHHHh
Confidence 99999955 5777789999999999998631 111112111 12367889999999888 89999998777
Q ss_pred Ccccc-----eecCCCccccccccCcchhHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCC
Q psy15216 216 TRIEA-----QIHGGGHEYGLRSGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNR 289 (2602)
Q Consensus 216 ~~l~~-----~~~g~~~~~~~~~gt~~~~~~~al~~al~-~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~ 289 (2602)
+.+.. ....+.........+++.+...++..++. ....++++.++++++.++++.+.|.+ . ++.+..+..
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~-~-~~~~~~~~g-- 344 (409)
T PRK07590 269 GKTSDGEGVSLNSLWNRRQSTKFNGVSYIVQRAAEAVYSPEGKAQIKELIDYYMENAKIIREGLES-A-GFEVYGGVN-- 344 (409)
T ss_pred hhccccchhhhHHHHHHHHhhcccCcCHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHh-c-CCceecCCc--
Confidence 53210 00000000000112345555555555564 12345677788888889999999987 3 565543321
Q ss_pred CCceEEEEEcc-cChhHHHHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHH
Q psy15216 290 IPHNLNISFNF-IEGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKL 365 (2602)
Q Consensus 290 ~~~~~~~~~~~-~~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~ 365 (2602)
...+++.++. .+..++...+ .+|.+.+|..|... ..+++||++. .++++++..++.
T Consensus 345 -~~f~wi~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~-----------------~~~~iRi~~~--~~~~~l~~~l~r 404 (409)
T PRK07590 345 -APYIWVKTPDGMSSWDFFDKLLQEANVVGTPGSGFGPS-----------------GEGYFRLSAF--GSRENVLEAMER 404 (409)
T ss_pred -ceEEEEECCCCCCHHHHHHHHHHHCCEEEeChhHhCCC-----------------CCCEEEEEcc--CCHHHHHHHHHH
Confidence 1233444443 3455666554 58999988766321 1379999963 478999999999
Q ss_pred HHh
Q psy15216 366 LKM 368 (2602)
Q Consensus 366 L~~ 368 (2602)
|.+
T Consensus 405 l~~ 407 (409)
T PRK07590 405 IKK 407 (409)
T ss_pred HHh
Confidence 875
|
|
| >PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.8e-19 Score=226.40 Aligned_cols=315 Identities=17% Similarity=0.166 Sum_probs=210.7
Q ss_pred cchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHHH-HHhCCc
Q psy15216 33 HIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDGF 111 (2602)
Q Consensus 33 ~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~-~~~~G~ 111 (2602)
+.+++...+..+++++.+|+++|+. ..++++|+|+|+++++.++. ++||+|+++..+|++....+.. +.+.|+
T Consensus 56 ~~y~R~~~p~~~~le~~lA~l~g~~--~av~~sSGt~Al~~al~~ll----~~Gd~Vi~~~~~y~~t~~~~~~~l~~~Gi 129 (433)
T PRK08134 56 HVYSRISNPTVAVLEERVAALEGGV--GAIATASGQAALHLAIATLM----GAGSHIVASSALYGGSHNLLHYTLRRFGI 129 (433)
T ss_pred ceeecCcChHHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHHh----CCCCEEEEeCCccHHHHHHHHHHHhhCCe
Confidence 4445555567899999999999976 46899999999999998886 7999999999999987776654 366799
Q ss_pred EEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHhcCCEEEEecccccccccccCCCCCccE
Q psy15216 112 RVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDL 191 (2602)
Q Consensus 112 ~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~~g~~livD~a~a~g~~~~dl~~~~~D~ 191 (2602)
++++++++ |+++++++|+++||+|++.+++||+|.+.|+++|+++||++|+++++|++|+.|....++ .+++|+
T Consensus 130 ~v~~vd~~-----d~~~l~~~i~~~TklV~~e~~~np~g~v~Di~~I~~la~~~gi~livD~t~a~~~~~~pl-~~GaD~ 203 (433)
T PRK08134 130 ETTFVKPG-----DIDGWRAAIRPNTRLLFGETLGNPGLEVLDIPTVAAIAHEAGVPLLVDSTFTTPYLLRPF-EHGADL 203 (433)
T ss_pred EEEEECCC-----CHHHHHHhcCCCCeEEEEECCCcccCcccCHHHHHHHHHHcCCEEEEECCCcccccCCch-hcCCCE
Confidence 99999864 799999999999999999999999999999999999999999999999999998876554 689999
Q ss_pred EEeccccccCCCC--cEEEEEe-cC-------CCCcccceecCCCcc--c-----------------cccccCcchhHHH
Q psy15216 192 MSFSAHKIYGPKG--IGALYIR-RN-------PRTRIEAQIHGGGHE--Y-----------------GLRSGTLATHQIV 242 (2602)
Q Consensus 192 ~~~S~~K~~Gp~G--~G~l~~~-~~-------~~~~l~~~~~g~~~~--~-----------------~~~~gt~~~~~~~ 242 (2602)
+++|.||++|++| +|.+++. .. ....+.+...+|+.. . +......+....+
T Consensus 204 vv~S~tK~l~g~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~~ls~~~A~ 283 (433)
T PRK08134 204 VYHSATKFLGGHGTAIGGVLVDGGRFDWEASGKFPELTEPYAGFHGMVFAEESTVAAFLLRARREGLRDFGACLSPMNAW 283 (433)
T ss_pred EEeccccccCCCCCceEEEEEecCccccccccccccccCCcccccccchhhccchhHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 9999999988887 5555553 21 122222222222110 0 0001112222222
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEe-CCC--CC------------CCCceEEEEEcc--cChhH
Q psy15216 243 GMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYIN-GDM--NN------------RIPHNLNISFNF--IEGES 305 (2602)
Q Consensus 243 al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~-~~~--~~------------~~~~~~~~~~~~--~~~~~ 305 (2602)
.+...| +.+..+.++..+++..+.+.|++ .|.+.-+ -|. ++ ....++.|.+.+ .....
T Consensus 284 l~~~gL----~tl~~R~~~~~~nA~~la~~L~~-~p~V~~V~yP~l~~~p~~~~~~~~~~~g~gg~~s~~l~~~~~~~~~ 358 (433)
T PRK08134 284 QLLQGI----ETLPLRMERHVANTRKVVAFLAS-HPAVARVAHPELESHPDHALAKRLLPRGAGSVFSFDLKGGRAAGRK 358 (433)
T ss_pred HHhcCC----CcHHHHHHHHHHHHHHHHHHHHh-CCCccEEECCCCCCCccHHHHHHhCCCCCceEEEEEecCCHHHHHH
Confidence 121222 23567777778888888888876 5665322 111 11 012233344432 12346
Q ss_pred HHHHhC--CeEEcccccCCC---C----C-CChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 306 LLMAIK--DIAVSSGSACTS---A----S-LEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 306 ~~~~L~--gI~v~~g~~~~~---~----~-~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
+++.|+ .+..+-|...+- + | ..+.-.....|+.+ +.||+|+|..+.++=++.+.++|++
T Consensus 359 f~~~l~l~~~~~slG~~~sL~~~p~~~~h~~~~~~~~~~~Gi~~----~liRlsvGlE~~~dli~dl~~Al~~ 427 (433)
T PRK08134 359 FIESLKLFSHLANVGDARSLVIHPASTTHFRMDAAALAAAGIGE----GTIRLSIGLEDADDLIDDLKRALKA 427 (433)
T ss_pred HHHhCCcceeccccCCCCceeeCCCccCcccCCHHHHHhcCCCC----CeEEEEeccCCHHHHHHHHHHHHHh
Confidence 666663 444444433221 1 0 01122334567763 7899999987655555566666653
|
|
| >PLN02452 phosphoserine transaminase | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.6e-19 Score=221.66 Aligned_cols=328 Identities=16% Similarity=0.134 Sum_probs=239.5
Q ss_pred CCCCCCHHHHHHHHHHHhhhcCC--CCCCCcchhhhHHHHHHHHHHHHHHHhCCCCC--cEEEeCCHHHHHHHHHHhccc
Q psy15216 5 ATTPIDPRVVDKMIPYLRVQFGN--PASRNHIYGWTAEKAIEKARNEVAQLIYADPR--EIIWTSGATESNNLAIKGAAH 80 (2602)
Q Consensus 5 ~~~~~p~~v~~a~~~~l~~~~~~--p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~--~Iv~t~g~T~al~~~~~~l~~ 80 (2602)
|-+..|+.|++++++.+.+..+. .-...+..+....+.++++++.+.++++++.+ -+++.+|+|.++..++.++.
T Consensus 14 GP~~lp~~Vl~~~~~~~~~~~~~g~s~~~~sHRs~~f~~i~~~~~~~L~~l~~~p~~y~v~~l~Gsgt~~~ea~~~nl~- 92 (365)
T PLN02452 14 GPATLPANVLAKAQAELYNWEGSGMSVMEMSHRGKEFLSIIQKAEADLRELLDIPDNYEVLFLQGGASTQFAAIPLNLC- 92 (365)
T ss_pred CCCCCCHHHHHHHHHHHhcccccCccccccCCCchHHHHHHHHHHHHHHHHhCCCCCceEEEEeCccHHHHHHHHHhcC-
Confidence 34478999999998876542110 11112233567778999999999999998433 36777999999999999998
Q ss_pred ccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCC---ccChHHHHhhccCCceEEEEecccCccccc-ccHH
Q psy15216 81 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNG---LITLSQLEEKICSDTILVSVMLVNNEIGVI-QPIL 156 (2602)
Q Consensus 81 ~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~---~ld~e~l~~~i~~~tklv~i~~~~npTG~~-~~l~ 156 (2602)
.+|+.+++....+.+ .++.+.+++.|...+.....+.. .+++++++ ..++.+.|.++|.+++||+. .|++
T Consensus 93 ---~~~~~~l~~~~G~fg-~r~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~hnETstGv~~~~~~ 166 (365)
T PLN02452 93 ---KPGDKADFVVTGSWS-KKAAKEAKKYCKTNVIASGKDEKYTKIPSVSEWE--LTPDAKFVHICANETIHGVEFKDYP 166 (365)
T ss_pred ---CCCCeEEEEECCHHH-HHHHHHHHHhCCCcEEEecCCCCCCCCCChHHcC--CCCCCcEEEECCCCCCCcEecCccc
Confidence 788988887766666 36777788888754444322322 45666652 24678999999999999995 7887
Q ss_pred HHHHHHHhcCCEEEEecccccccccccCCCCCccEEEeccccccCCCCcEEEEEecCCCCcccceecC---CCc--cccc
Q psy15216 157 EIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHG---GGH--EYGL 231 (2602)
Q Consensus 157 ~I~~la~~~g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K~~Gp~G~G~l~~~~~~~~~l~~~~~g---~~~--~~~~ 231 (2602)
++.+ +++++|+++++|+.|+|++++++|+ +|.||.+||+|+|++++++++++++.+.... +.. ....
T Consensus 167 ~i~~------~~lvVDa~Ss~g~~pidv~~~~v~~--~saqK~lGP~Gl~~v~vr~~~l~~~~~~~~~~~~~~~~~~~~s 238 (365)
T PLN02452 167 DVGN------VPLVADMSSNFLSKPVDVSKYGVIY--AGAQKNVGPSGVTIVIIRKDLIGNARPITPGMLDYKIHAENDS 238 (365)
T ss_pred ccCC------CeEEEECCccccCcccCHHHcCEEE--EecccccCCCCeEEEEEcHHHHhhcccCCCchhhHHHHHhcCC
Confidence 7742 8999999999999999999988755 6999988999999999999988766543221 110 1122
Q ss_pred cccCcchhHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHhhccCceEEe-CCCCCCCCceEEEEEccc-ChhHHH
Q psy15216 232 RSGTLATHQIVGMGEAFRLARI--EMKEELKRILFLQKRLYNGLMESIEEIYIN-GDMNNRIPHNLNISFNFI-EGESLL 307 (2602)
Q Consensus 232 ~~gt~~~~~~~al~~al~~~~~--~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~-~~~~~~~~~~~~~~~~~~-~~~~~~ 307 (2602)
..+||++..++++.++|+++.+ +++.+.++++++++++++.|.+ .+|+... .++..+++..+.|.++.. ..++|+
T Consensus 239 ~~~TP~v~~i~~l~~aL~~l~~~gGl~~~~~r~~~~a~~l~~~l~~-~~G~y~~~~~~~~rs~~~vsF~~~~~~~~~~f~ 317 (365)
T PLN02452 239 LYNTPPCFGIYMCGLVFEDLLAQGGLKAMEKRNIRKADLLYDAIDE-SNGFYVCPVEKSVRSLMNVPFTLGGSELEAEFV 317 (365)
T ss_pred ccCChhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHh-CCCcccCCCChHHhCCeEEEEEcCCchhHHHHH
Confidence 3479999999999999997653 6999999999999999999987 5676221 112234443444554443 234566
Q ss_pred HHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 308 MAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 308 ~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
+.+ +|+..-+|.... +.+|+|+..-.+.+++++|++.+++.
T Consensus 318 ~~~~~~g~~~~~G~r~~---------------------gg~R~s~yna~~~~~v~~L~~~m~~f 360 (365)
T PLN02452 318 KEAAKAGMVQLKGHRSV---------------------GGMRASIYNAMPLAGVEKLVAFMKDF 360 (365)
T ss_pred HHHHHCCCcccCCcccc---------------------CceEEECcCCCCHHHHHHHHHHHHHH
Confidence 665 687776664321 34999998889999999999999963
|
|
| >TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.3e-19 Score=230.04 Aligned_cols=306 Identities=15% Similarity=0.130 Sum_probs=202.3
Q ss_pred cchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHHHH-HhCCc
Q psy15216 33 HIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDGF 111 (2602)
Q Consensus 33 ~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~-~~~G~ 111 (2602)
+.|++...+..+++++.+++++|++ +++++++++.|+++++. +. ++||+|+++++.|+++...+..+ .+.|+
T Consensus 39 ~~Y~r~~~p~~~~le~~la~l~g~~--~~l~~~sG~~al~~~l~-ll----~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~ 111 (378)
T TIGR01329 39 YDYTRSGNPTRTALESLLAKLDKAD--RAFAFSSGMAALDVITR-LL----NNGDEIIAGDDLYGGTDRLLTQVVPRSGV 111 (378)
T ss_pred CccCCCCChHHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHH-Hh----CCCCEEEEcCCCchHHHHHHHHHHHHcCc
Confidence 3344434456789999999999983 56666777789988765 44 79999999999999987776653 66799
Q ss_pred EEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHhcCCEEEEecccccccccccCCCCCccE
Q psy15216 112 RVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDL 191 (2602)
Q Consensus 112 ~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~~g~~livD~a~a~g~~~~dl~~~~~D~ 191 (2602)
++++++.. |+++++++++++||+|++++|+||+|.+.|+++|+++||++|+++++|++++.+.....+ .+++|+
T Consensus 112 ~v~~vd~~-----d~~~le~~i~~~tklv~le~psnptg~v~dl~~I~~la~~~g~~vivD~a~~~~~~~~~l-~~g~Di 185 (378)
T TIGR01329 112 VVVHVDTT-----DLDKVKAALGPKTKLVLLESPTNPLQKIVDIRKISEMAHAQNALVVVDNTMMSPLLCNPL-ELGADI 185 (378)
T ss_pred EEEEeCCC-----CHHHHHHhcCcCceEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCcccccCChh-hcCCcE
Confidence 99999863 899999999999999999999999999999999999999999999999999877654444 468999
Q ss_pred EEecccc-ccCCCC--cEEEEEecC-CCCcccceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy15216 192 MSFSAHK-IYGPKG--IGALYIRRN-PRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQK 267 (2602)
Q Consensus 192 ~~~S~~K-~~Gp~G--~G~l~~~~~-~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~ 267 (2602)
+++|+|| +.|+.+ .|+++++++ +.+++.+.... .....+....+.+...++ .+..+.++..+++.
T Consensus 186 ~v~S~tK~l~G~~~~~~G~v~~~~~~~~~~~~~~~~~-------~G~~~~~~~a~l~~~~l~----tl~~R~e~~~~na~ 254 (378)
T TIGR01329 186 VYHSATKFLAGHSDVMAGVLAVKGEEIAKKVYFLQNS-------TGSGLAPFDCWLLLRGIK----TLAIRIEKQQENAR 254 (378)
T ss_pred EEEecceeccCCccceeEEEEeCcHHHHHHHHHHHHh-------cCCcCCHHHHHHHHccCC----CHHHHHHHHHHHHH
Confidence 9999999 556666 799988654 33445443320 011222222211112222 34555566666666
Q ss_pred HHHHHHhhccCceE-EeCC--CCC---------CCCceEEEEEcc--cC-hhHHHHHh--CCeEEcccccCCC----C--
Q psy15216 268 RLYNGLMESIEEIY-INGD--MNN---------RIPHNLNISFNF--IE-GESLLMAI--KDIAVSSGSACTS----A-- 324 (2602)
Q Consensus 268 ~l~~~L~~~~~g~~-l~~~--~~~---------~~~~~~~~~~~~--~~-~~~~~~~L--~gI~v~~g~~~~~----~-- 324 (2602)
.+.+.|.+ .|.+. +.-| ++. ....+..++|.. .+ ..+++..| .+|.++.|...+- .
T Consensus 255 ~la~~L~~-~~~v~~v~~p~l~~~p~~~l~~~~~~g~~~~~sf~~~~~~~~~~~~~~L~~~~i~~s~G~~~sl~~~p~~~ 333 (378)
T TIGR01329 255 AIAMFLST-HPRVKKVRYAGLPSHPGFHLHFSQAKGAGSVLSFETGSVALSKRLVEATKLFSITVSFGSVNSLISMPCFM 333 (378)
T ss_pred HHHHHHHh-CCCccEEECCCCCCCccHHHHHHhCCCcceEEEEEECCHHHHHHHHHhCcCcccccCCCCCCceeeCCCcc
Confidence 66666665 44432 1111 110 011223444433 22 44677777 5777887754331 1
Q ss_pred -CCC-hHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHH
Q psy15216 325 -SLE-PSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK 367 (2602)
Q Consensus 325 -~~~-~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~ 367 (2602)
|.. +.......|++ ++.||+|+|....++-++.+-++|+
T Consensus 334 ~~~~~~~~~~~~~gi~----~~liR~svGlE~~~dl~~dl~~al~ 374 (378)
T TIGR01329 334 SHASIPAEVREERGLP----EDLVRLSVGIEDVDDLISDLDIAFV 374 (378)
T ss_pred ccccCCHHHHHhcCCC----CCeEEEEeccCCHHHHHHHHHHHHH
Confidence 000 11223456665 3889999997655544455555554
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | Back alignment and domain information |
|---|
Probab=99.83 E-value=1e-18 Score=223.63 Aligned_cols=332 Identities=14% Similarity=0.078 Sum_probs=221.0
Q ss_pred CCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCE
Q psy15216 1405 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKH 1484 (2602)
Q Consensus 1405 ~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~ 1484 (2602)
..++..+++.+.+...+.+. .....+++++++++++|.+ ++++|+|+|+|+++++.++. ++|||+
T Consensus 9 ~~~~e~~a~~~~~~~~~~~~----------~g~~~~~~e~~la~~~g~~--~~v~~~sgt~aL~~~l~al~---~~pGd~ 73 (376)
T TIGR02379 9 VTGQELEYIAEAISEGKLSG----------DGPFSRRCETWLENRTGTK--KALLTPSCTAALEMAALLLD---IQPGDE 73 (376)
T ss_pred CCHHHHHHHHHHHHcCCccC----------CcHHHHHHHHHHHHHhCCC--eEEEeCCHHHHHHHHHHHcC---CCCcCE
Confidence 34566788888876532211 0134678889999998864 79999999999999998873 489999
Q ss_pred EEEcCCCCcchHHHHHHHHhCCcEEEEeccCCC-CCcChhHHHhhccCCceEEEEeccccccccccChHHHHHHhhhcCC
Q psy15216 1485 IITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN-GLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGV 1563 (2602)
Q Consensus 1485 Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~-~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~~ia~~~gi 1563 (2602)
|++++++|+++..++... |+++++++++++ +.+|+++++++++++|++|+++ |++|...|+++|.++|++||+
T Consensus 74 Viv~~~t~~~~~~~~~~~---G~~~v~vd~d~~~~~~d~~~le~~i~~~tk~Iip~---~~~G~~~d~~~I~~la~~~~i 147 (376)
T TIGR02379 74 VIMPSYTFVSTANAFVLR---GAKIVFVDIRPDTMNIDETLIESAITHRTKAIVPV---HYAGVACDMDTIMALANKHQL 147 (376)
T ss_pred EEECCCCcHHHHHHHHHc---CCEEEEEecCCCcCCCCHHHHHHhcCcCceEEEEe---CCCCCccCHHHHHHHHHHCCC
Confidence 999999999988777655 999999999875 5799999999999999998754 569999999999999999999
Q ss_pred EEEEecccccCcccccCCCCC--ccEEEEcccc--cc--CCCceEEEEEe-cCCCCccccccccCCccc--------cC-
Q psy15216 1564 IFHCDAAQAVGKIDINIQNYK--VDLMSFSAHK--IY--GPKGIGALYIR-RNPRTRIEAQIHGGGHEY--------GL- 1627 (2602)
Q Consensus 1564 ~vivD~a~~~g~~~~~l~~~~--~D~~v~S~~K--~~--gp~G~G~l~~~-~~~~~~l~~~~~g~~~~~--------~~- 1627 (2602)
++|+|++|+.|.. ++....+ .|+.++|||+ .+ |+.| |+++.+ +++.++++.+...|.... .+
T Consensus 148 ~vIeDaa~~~g~~-~~~~~~g~~~~~~~fSf~~~K~l~~g~~g-G~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 225 (376)
T TIGR02379 148 FVIEDAAQGVMST-YKGRALGSIGHLGTFSFHETKNYTSGGEG-GALLINDQAFIERAEIIREKGTNRSQFFRGEVDKYT 225 (376)
T ss_pred EEEEECccccCCc-cCCcccCCCCCEEEEeCCCCCcCcccCCc-eEEEECCHHHHHHHHHHHHhCCCCccccccCCCcce
Confidence 9999999998864 3333333 3788888876 33 4455 777776 556666655443222110 00
Q ss_pred --CCCCcchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcCC--c-EEEeCCCCCCCCc--eEEEEEec-CC
Q psy15216 1628 --RSGTLATHQIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIE--E-IYINGDMNNRIPH--NLNISFNF-IE 1698 (2602)
Q Consensus 1628 --~~gt~~~~~~~al~~aL~~~-~~~~~~~~~~~~~l~~~l~~~L~~~~~--g-l~i~~~~~~~~~~--~~~~~~~~-~~ 1698 (2602)
..|...- +.-+.+|+-.. ...+++..++.++..+++.+.|.. ++ + +.+...+....+. ...+.++. .+
T Consensus 226 ~~~~g~n~~--~~~~~Aa~g~~qL~~l~~~~~~r~~~~~~y~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 302 (376)
T TIGR02379 226 WRDIGSSYL--PSELQAAYLWAQLEQADRINQDRLATWQLYQDALKP-LEEKGIIELPSIPNGCQHNAHMFYIKLKDEDD 302 (376)
T ss_pred eeeecccCC--ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcc-CCcCCeeeCCCCCCCCeeeeEEEEEEECCcCC
Confidence 0111110 11122233211 234677778888888888888865 33 2 3332222222222 22233322 24
Q ss_pred cHHHHHhc--CCEEEccccccCCCCCChhHHHH-----HcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1699 GESLLMAI--KDIAVSSGSACTSASLEPSYVLR-----ALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1699 ~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~-----~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
.+++...| +||..+. ++.+.+.++.+... .++..+......+.|++++..|.+|+++++++|++
T Consensus 303 r~~l~~~L~~~gI~~~~--~~~p~~~~~~~~~~~~~~~~~p~~~~~~~~~l~LP~~~~l~~~~~~~i~~~i~~ 373 (376)
T TIGR02379 303 RNELIKYLKEQEIMAVF--HYVPLHSSPAGRYFGRFHGEDIYTTKESERLVRLPLYYGLSKEDQARVIQTICD 373 (376)
T ss_pred HHHHHHHHHHCCCCccc--cCcCCCcchhHHhhCCCCCCChHHHHHHhceEEccCCCCCCHHHHHHHHHHHHH
Confidence 67777777 6887654 33343344432110 11122223347899999999999999999999986
|
This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041). |
| >TIGR01174 ftsA cell division protein FtsA | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.1e-19 Score=227.45 Aligned_cols=195 Identities=17% Similarity=0.247 Sum_probs=154.9
Q ss_pred HHHHHHHHHHHHHcCCceEEEechhHHHHHHhhhccCcccceEEEEEeCCceEEEEEEEEECCEEEEEEEecCCCCcchH
Q psy15216 778 DIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDD 857 (2602)
Q Consensus 778 ~~qr~~~~~Aa~~AGl~~~~li~EPtAAAl~y~~~~~~~~~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~ 857 (2602)
....+.+.+|++.||+++..++.||.|+|++|... ...+..++|+|+||||+|+++++ ++.+.. .....+||++
T Consensus 157 ~~~v~~~~~~~~~aGl~~~~i~~~~~A~a~a~~~~-~~~~~~~~vvDiG~gtt~i~i~~--~g~~~~---~~~i~~GG~~ 230 (371)
T TIGR01174 157 STILRNLVKCVERCGLEVDNIVLSGLASAIAVLTE-DEKELGVCLIDIGGGTTDIAVYT--GGSIRY---TKVIPIGGNH 230 (371)
T ss_pred HHHHHHHHHHHHHcCCCeeeEEEhhhhhhhhhcCc-chhcCCEEEEEeCCCcEEEEEEE--CCEEEE---EeeecchHHH
Confidence 35678888999999999999999999999988543 23456799999999999999986 333222 2336799999
Q ss_pred HHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHcccc------cceEEEEEecCCceEEEEeCHHHHHHHHHHHHHH
Q psy15216 858 FDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQ------SSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNR 931 (2602)
Q Consensus 858 ~D~~l~~~l~~~~~~~~~~~~~~~~l~~~~e~~K~~LS~~------~~~~~~i~~~~~~~~~~~itr~~fe~l~~~~~~~ 931 (2602)
||+.+.+.+. ..+.+||++|+.++.. .+..+.++..+ .....+++|++|++++++.+++
T Consensus 231 it~~i~~~l~--------------~~~~~AE~lK~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~is~~~l~~ii~~~~~e 295 (371)
T TIGR01174 231 ITKDIAKALR--------------TPLEEAERIKIKYGCASIPLEGPDENIEIPSVG-ERPPRSLSRKELAEIIEARAEE 295 (371)
T ss_pred HHHHHHHHhC--------------CCHHHHHHHHHHeeEecccCCCCCCEEEeccCC-CCCCeEEcHHHHHHHHHHHHHH
Confidence 9998876442 2257899999999864 23445555332 4567899999999999999999
Q ss_pred HHHHHH-HHHHHcCCCccccce-EEEecCccchHHHHHHHHhhccCcccC------------cCCcchHhHHHHHHH
Q psy15216 932 TILLSS-KALMDANLTIKDINN-VILVGGSTRMKHIHEGVSNFFKTTLLT------------SIDPDKAVVFGAAIQ 994 (2602)
Q Consensus 932 ~~~~i~-~~l~~a~~~~~~i~~-V~LvGG~sr~P~v~~~l~~~f~~~~~~------------~~~p~~aVa~GAa~~ 994 (2602)
+.+.++ +.|++++.. .+++. |+|+||+|++|.+++.+++.|+.++.. ..+|..++|.|.++|
T Consensus 296 i~~~i~~~~L~~~~~~-~~i~~gIvLtGG~S~ipgi~~~l~~~~~~~vr~~~P~~~~~~~~~~~~p~~~~a~Gl~~~ 371 (371)
T TIGR01174 296 ILEIVKQKELRKSGFK-EELNGGIVLTGGGAQLEGIVELAEKVFDNPVRIGLPQNIGGLTEDVNDPEYSTAVGLLLY 371 (371)
T ss_pred HHHHHHHHHHHhcCCc-ccCCCEEEEeChHHcccCHHHHHHHHhCCCeEEECCCccCCchhhcCCcHHHHHHHHHhC
Confidence 999997 999998876 67877 999999999999999999999755322 127888899998764
|
This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70. |
| >PLN02271 serine hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.4e-18 Score=216.62 Aligned_cols=361 Identities=14% Similarity=0.177 Sum_probs=250.5
Q ss_pred CcccHHHHHHHHHhcCCCccccceeeeeceeeeccCCCCCCCHHHHHHHHHHHhhcc--CCCCCccchhHHHHHHHHHHH
Q psy15216 1365 SPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDATTPIDPRVVDKMIPYLRVQF--GNPASRNHIYGWTAEKAIEKA 1442 (2602)
Q Consensus 1365 ~~~~~~~v~~aL~~~g~~~~~~ei~~iP~~~v~L~~~~~~~~~~v~eal~~~l~~~~--~np~~~~~~~~~~~~~~~~~l 1442 (2602)
||+-+..+.+..+. ....+.++|.. .-.++.+++++...+.+.| ++|+...|.......++..-+
T Consensus 133 Dpei~~li~~E~~r-----Q~~~l~LIASE--------N~~S~av~~algS~ltnkYaEG~pG~Ryy~G~~~iD~iE~la 199 (586)
T PLN02271 133 DPDIHELMEKEKQR-----QFKGIELIASE--------NFVCRAVMEALGSHLTNKYSEGMPGARYYTGNQYIDQIERLC 199 (586)
T ss_pred CHHHHHHHHHHHHH-----HhcCeeecccc--------ccCCHHHHHHhcCcccccCCCCCCCCcCCCCChhHHHHHHHH
Confidence 45444544443322 23445566643 3456688999988888754 678776666555566677777
Q ss_pred HHHHHHHhCCCC----CcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHH------HHHhCCcEEEEe
Q psy15216 1443 RNEVAQLIYADP----REIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIR------KLENDGFRVTYL 1512 (2602)
Q Consensus 1443 r~~ia~~~g~~~----~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~------~~~~~G~~v~~v 1512 (2602)
.++..++||+++ .+|-.- +++.|+..++.+++ +|||+|+..+.+|+++..... .+...|..+..+
T Consensus 200 ~era~~lF~~~~~~~gaNVQp~-SGs~AN~aV~~ALl----~PGD~IL~ldl~~GGHlshg~~~~~g~~vs~sG~~~~~v 274 (586)
T PLN02271 200 CERALAAFGLDSEKWGVNVQPY-SCTSANFAVYTGLL----LPGDRIMGLDSPSGGHMSHGYYTPGGKKVSGASIFFESL 274 (586)
T ss_pred HHHHHHHhCCcccccccceeec-cHHHHHHHHHHHhc----CCCCEEEEecCCCCCchhcccccccccccccccceEEEE
Confidence 888899999876 454333 88999999999987 999999999999999876542 223446666666
Q ss_pred c--cC-CCCCcChhHHHh-hccCCceEEEEeccccccccccChHHHHHHhhhcCCEEEEecccccCcccccCC---CCCc
Q psy15216 1513 K--PK-NNGLITLSQLEE-KICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQ---NYKV 1585 (2602)
Q Consensus 1513 ~--~~-~~~~id~d~l~~-~i~~~t~lv~l~~~~n~tG~~~~l~~I~~ia~~~gi~vivD~a~~~g~~~~~l~---~~~~ 1585 (2602)
+ ++ .++.+|++++++ +...+|++|++.+..+| ..+|+++|.++|+++|+++++|++|.+|.++.+.. -.++
T Consensus 275 pY~~d~~~g~IDyd~lek~a~~~rPKLII~g~Sayp--r~~D~~~i~eIAdevGA~LmvD~AH~aGLIa~g~~~sP~~~a 352 (586)
T PLN02271 275 PYKVNPQTGYIDYDKLEEKALDFRPKILICGGSSYP--REWDYARFRQIADKCGAVLMCDMAHISGLVAAKECVNPFDYC 352 (586)
T ss_pred EcccccccCccCHHHHHHHhhhcCCeEEEECchhcc--CcCCHHHHHHHHHHcCCEEEEECcccccccccCcCCCCCcCC
Confidence 5 54 468899999998 67889999999998888 77899999999999999999999999998866533 2258
Q ss_pred cEEEEcccc-ccCCCceEEEEEecCCCCccccccccCCcc---------------ccCCCCCcchhHHHHHHHHHHHH-H
Q psy15216 1586 DLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGHE---------------YGLRSGTLATHQIVGMGEAFRLA-R 1648 (2602)
Q Consensus 1586 D~~v~S~~K-~~gp~G~G~l~~~~~~~~~l~~~~~g~~~~---------------~~~~~gt~~~~~~~al~~aL~~~-~ 1648 (2602)
|++++|+|| ++||+| |+++++++....+.+...+|... .+++. .+..+.++|++.++... .
T Consensus 353 Dvvt~TTHKtLrGPrG-G~I~~r~~~~~~~~g~~gs~s~~~~~~d~~~kI~~aVfPglqg-Gphn~~IAalAvalkea~~ 430 (586)
T PLN02271 353 DIVTSTTHKSLRGPRG-GIIFYRKGPKLRKQGMLLSHGDDNSHYDFEEKINFAVFPSLQG-GPHNNHIAALAIALKQVAT 430 (586)
T ss_pred cEEEeCCcccCCCCCc-eEEEecccccccccCCccccccccccHHHHHHhhcccCCcccc-ChhHHHHHHHHHHHHHHhC
Confidence 999999999 779999 88888876443333322222210 13333 44555699999999854 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEec--CCcHHHHHhc--CCEEEccccccCCCCCCh
Q psy15216 1649 IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF--IEGESLLMAI--KDIAVSSGSACTSASLEP 1724 (2602)
Q Consensus 1649 ~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~L--~gI~v~~g~~~~~~~~~~ 1724 (2602)
..+..+.++..++++.|.+.|.+ .|+.+..... -.+...+.+.. .++......| .+|.+.....+...
T Consensus 431 ~efk~Ya~QVv~NAkaLA~~L~~--~G~~vv~ggT--dnHlvLvDl~~~g~~G~~ae~~Le~~~I~~Nkn~iP~d~---- 502 (586)
T PLN02271 431 PEYKAYMQQVKKNAQALASALLR--RKCRLVTGGT--DNHLLLWDLTTLGLTGKNYEKVCEMCHITLNKTAIFGDN---- 502 (586)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH--CCCeEeeCCC--CcceeeecCcccCCCHHHHHHHHHHcCeEeccccCCCCC----
Confidence 45688999999999999999988 5887764222 23444444432 2444444444 57777543322111
Q ss_pred hHHHHHcCCCccccCCeEEEecCCC----CCHHHHHHHHHHHHHh
Q psy15216 1725 SYVLRALGCNDELAHSSIRFTIGRF----TTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1725 ~~~~~~~~~~~~~~~~~iRls~~~~----~t~edid~li~~L~~~ 1765 (2602)
.....+.|||+.... ..++|++.+.+.|.+.
T Consensus 503 ----------~~~~psGiRiGT~alT~rG~~e~d~~~iA~~i~~~ 537 (586)
T PLN02271 503 ----------GTISPGGVRIGTPAMTSRGCLESDFETIADFLLRA 537 (586)
T ss_pred ----------CCCCCCcccccCHHHHhcCCCcHHHHHHHHHHHHH
Confidence 112237799986543 3558888888888764
|
|
| >PLN02452 phosphoserine transaminase | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.6e-19 Score=220.63 Aligned_cols=329 Identities=17% Similarity=0.133 Sum_probs=240.6
Q ss_pred cCCCCCCCHHHHHHHHHHHhhccC--CCCCccchhHHHHHHHHHHHHHHHHHHhCCCCC-c-EEEeCCHHHHHHHHHHhh
Q psy15216 1399 KDATTPIDPRVVDKMIPYLRVQFG--NPASRNHIYGWTAEKAIEKARNEVAQLIYADPR-E-IIWTSGATESNNLAIKGA 1474 (2602)
Q Consensus 1399 ~~~~~~~~~~v~eal~~~l~~~~~--np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~-~-iv~t~gaT~al~~al~~l 1474 (2602)
....+..|+.+++++.+.+.++.+ ..-...++.+..+.++++++++.+.++++++.+ + ++++.|+|.++.++++++
T Consensus 12 ~pGP~~lp~~Vl~~~~~~~~~~~~~g~s~~~~sHRs~~f~~i~~~~~~~L~~l~~~p~~y~v~~l~Gsgt~~~ea~~~nl 91 (365)
T PLN02452 12 SAGPATLPANVLAKAQAELYNWEGSGMSVMEMSHRGKEFLSIIQKAEADLRELLDIPDNYEVLFLQGGASTQFAAIPLNL 91 (365)
T ss_pred eCCCCCCCHHHHHHHHHHHhcccccCccccccCCCchHHHHHHHHHHHHHHHHhCCCCCceEEEEeCccHHHHHHHHHhc
Confidence 456678899999999887654221 111123344778889999999999999998432 3 556789999999999999
Q ss_pred hhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCC---CcChhHHHhhccCCceEEEEeccccccccc-cC
Q psy15216 1475 AHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNG---LITLSQLEEKICSDTILVSVMLVNNEIGVI-QP 1550 (2602)
Q Consensus 1475 ~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~---~id~d~l~~~i~~~t~lv~l~~~~n~tG~~-~~ 1550 (2602)
. .+|+++++....+.+ ..+.+.+++.|...+.....+.. .+++++++ ..++.+.|.++|.++.||+. .|
T Consensus 92 ~----~~~~~~l~~~~G~fg-~r~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~hnETstGv~~~~ 164 (365)
T PLN02452 92 C----KPGDKADFVVTGSWS-KKAAKEAKKYCKTNVIASGKDEKYTKIPSVSEWE--LTPDAKFVHICANETIHGVEFKD 164 (365)
T ss_pred C----CCCCeEEEEECCHHH-HHHHHHHHHhCCCcEEEecCCCCCCCCCChHHcC--CCCCCcEEEECCCCCCCcEecCc
Confidence 8 789999888877777 34566666667644444222222 35666653 35678999999999999995 77
Q ss_pred hHHHHHHhhhcCCEEEEecccccCcccccCCCCCccEEEEccccccCCCceEEEEEecCCCCccccccccCCc-----cc
Q psy15216 1551 ILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGH-----EY 1625 (2602)
Q Consensus 1551 l~~I~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K~~gp~G~G~l~~~~~~~~~l~~~~~g~~~-----~~ 1625 (2602)
++++.+ +++++|+++++|+.++++.++++|+ +|.||.+||+|+|++++++++++++.+....... ..
T Consensus 165 ~~~i~~------~~lvVDa~Ss~g~~pidv~~~~v~~--~saqK~lGP~Gl~~v~vr~~~l~~~~~~~~~~~~~~~~~~~ 236 (365)
T PLN02452 165 YPDVGN------VPLVADMSSNFLSKPVDVSKYGVIY--AGAQKNVGPSGVTIVIIRKDLIGNARPITPGMLDYKIHAEN 236 (365)
T ss_pred ccccCC------CeEEEECCccccCcccCHHHcCEEE--EecccccCCCCeEEEEEcHHHHhhcccCCCchhhHHHHHhc
Confidence 877642 8999999999999999999998866 5999988999999999999887665432211111 12
Q ss_pred cCCCCCcchhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCC-CCCCCCceEEEEEecC-CcHH
Q psy15216 1626 GLRSGTLATHQIVGMGEAFRLARI--EMKEELKRILFLQKRLYNGLMESIEEIYINGD-MNNRIPHNLNISFNFI-EGES 1701 (2602)
Q Consensus 1626 ~~~~gt~~~~~~~al~~aL~~~~~--~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~-~~~~~~~~~~~~~~~~-~~~~ 1701 (2602)
....+||++..++++.++|+++.+ +++.+.++++++++++++.|.+ .+|+..... +..+++..+.|.++.. ..+.
T Consensus 237 ~s~~~TP~v~~i~~l~~aL~~l~~~gGl~~~~~r~~~~a~~l~~~l~~-~~G~y~~~~~~~~rs~~~vsF~~~~~~~~~~ 315 (365)
T PLN02452 237 DSLYNTPPCFGIYMCGLVFEDLLAQGGLKAMEKRNIRKADLLYDAIDE-SNGFYVCPVEKSVRSLMNVPFTLGGSELEAE 315 (365)
T ss_pred CCccCChhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHh-CCCcccCCCChHHhCCeEEEEEcCCchhHHH
Confidence 233479999999999999997664 6999999999999999999987 567622211 1223333444444433 2345
Q ss_pred HHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1702 LLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1702 ~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
|...+ +|+..-+|... .+.+|+|+....+.+++++|++.+++
T Consensus 316 f~~~~~~~g~~~~~G~r~---------------------~gg~R~s~yna~~~~~v~~L~~~m~~ 359 (365)
T PLN02452 316 FVKEAAKAGMVQLKGHRS---------------------VGGMRASIYNAMPLAGVEKLVAFMKD 359 (365)
T ss_pred HHHHHHHCCCcccCCccc---------------------cCceEEECcCCCCHHHHHHHHHHHHH
Confidence 55555 68777666532 13499999999999999999999997
|
|
| >PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.8e-19 Score=229.76 Aligned_cols=284 Identities=20% Similarity=0.211 Sum_probs=212.7
Q ss_pred HHHHHHHHHHHHhC------CCCC-cEEEeCCHHHHHHHHHHhh-hhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEE
Q psy15216 1438 AIEKARNEVAQLIY------ADPR-EIIWTSGATESNNLAIKGA-AHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRV 1509 (2602)
Q Consensus 1438 ~~~~lr~~ia~~~g------~~~~-~iv~t~gaT~al~~al~~l-~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v 1509 (2602)
...++|++++++++ .+++ +|++++|+.+++..++..+ . ++||.|+++.|.|+.+...++.. |+++
T Consensus 45 g~~~lr~~ia~~~~~~~~~~~~~~~~i~~~~G~~~~~~~~~~~~~~----~~~~~vlv~~P~y~~~~~~~~~~---g~~~ 117 (363)
T PF00155_consen 45 GYPELREAIADFLGRRYGVPVDPEANILVTSGAQAALFLLLRLLKI----NPGDTVLVPDPCYPSYIEAARLL---GAEV 117 (363)
T ss_dssp HHHHHHHHHHHHHHHHHTHHTTGGEGEEEESHHHHHHHHHHHHHHS----STTSEEEEEESSSTHHHHHHHHT---TSEE
T ss_pred hhHHHHHHHHHHhhhccCcccccceEEEEecccccchhhhhhcccc----cccccceecCCcccccccccccc---Ccee
Confidence 36788999999998 6777 8999999999998888887 4 79999999999999998777766 9999
Q ss_pred EEeccC--CCCCcChhHHHhhccC------CceEEEEeccccccccccChHHH---HHHhhhcCCEEEEecccccCccc-
Q psy15216 1510 TYLKPK--NNGLITLSQLEEKICS------DTILVSVMLVNNEIGVIQPILEI---GELCRSKGVIFHCDAAQAVGKID- 1577 (2602)
Q Consensus 1510 ~~v~~~--~~~~id~d~l~~~i~~------~t~lv~l~~~~n~tG~~~~l~~I---~~ia~~~gi~vivD~a~~~g~~~- 1577 (2602)
+.++.+ .++.+|++++++.+++ +++++++++|+||||.++|.+++ +++|++||+++|+|++|+.....
T Consensus 118 ~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~De~y~~~~~~~ 197 (363)
T PF00155_consen 118 IPVPLDSENDFHLDPEALEEALDELPSKGPRPKAVLICNPNNPTGSVLSLEELRELAELAREYNIIIIVDEAYSDLIFGD 197 (363)
T ss_dssp EEEEEEETTTTEETHHHHHHHHHTSHTTTETEEEEEEESSBTTTTBB--HHHHHHHHHHHHHTTSEEEEEETTTTGBSSS
T ss_pred eeccccccccccccccccccccccccccccccceeeecccccccccccccccccchhhhhcccccceeeeeceeccccCC
Confidence 999864 5678999999999987 68899999999999999995555 55599999999999998754322
Q ss_pred -------ccCCCCCccEEEEccccccCCCc--eEEEEEecCCCCccccccccCCccccCCCCCcchhHHHHHHHHHHHH-
Q psy15216 1578 -------INIQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLA- 1647 (2602)
Q Consensus 1578 -------~~l~~~~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~- 1647 (2602)
..+......+++.|++|.+|++| +||+++++++++.+..... .+..+.....++..++...
T Consensus 198 ~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRvG~i~~~~~~~~~l~~~~~---------~~~~~~~~~~~~~~~l~~~~ 268 (363)
T PF00155_consen 198 PDFGPIRSLLDEDDNVIVVGSLSKSFGLPGLRVGYIVAPPELIERLRRFQR---------SGLSSSPMQAAAAAALSDPE 268 (363)
T ss_dssp SHTHHHHGHHTTTSTEEEEEESTTTTTSGGGTEEEEEEEHHHHHHHHHHHH---------HTTSSHHHHHHHHHHHHHHH
T ss_pred CccCcccccccccccceeeeeccccccccccccccccchhhhhhhhhhccc---------cccccchhhHHHHHhhhccc
Confidence 11222222488889999889888 8999998877666654331 1122444444454555522
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecCCcHHHHHhc--C-CEEEccccccCCCCC
Q psy15216 1648 --RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI--K-DIAVSSGSACTSASL 1722 (2602)
Q Consensus 1648 --~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~-gI~v~~g~~~~~~~~ 1722 (2602)
....++.++++.++++++.+.|.+ . ++.+..++.. ......++..+..++.+.| + ||.+.+|..+..+
T Consensus 269 ~~~~~~~~~~~~l~~~~~~l~~~L~~-~-~~~~~~~~~~---~~~~~~~~~~~~~~l~~~L~~~~gi~v~pg~~~~~~-- 341 (363)
T PF00155_consen 269 LVEKWLEELRERLRENRDLLREALEE-I-GITVLPPEAG---FFLWVRLDPNDAEELAQELLEEYGILVRPGSYFGVP-- 341 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-T-TSEEEHHSBS---SEEEEEESHHHHHHHHHHHHHHHTEEEEEGGGGTST--
T ss_pred ccccccccchhhHHHHHHHHHHHHHH-h-hhheeeccCc---cEEEEEcccchHHHHHHHHHHhCCEEEEecCCCCCC--
Confidence 236788999999999999999988 3 7777754322 2222222222345666666 4 9999999877543
Q ss_pred ChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHH
Q psy15216 1723 EPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLL 1762 (2602)
Q Consensus 1723 ~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L 1762 (2602)
+++|+++ ...+.+++++++++|
T Consensus 342 -----------------~~iRi~~-a~~~~e~~~~~~~~l 363 (363)
T PF00155_consen 342 -----------------GYIRISL-ASHSEEDLEEALERL 363 (363)
T ss_dssp -----------------TEEEEEG-GCSCHHHHHHHHHHH
T ss_pred -----------------CEEEEEe-ccCCHHHHHHHHhhC
Confidence 8999999 567999999999876
|
On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A .... |
| >TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.5e-19 Score=230.27 Aligned_cols=317 Identities=15% Similarity=0.103 Sum_probs=208.7
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHh---CCCCCcEEEeCCHHHHHHHHHHhccccccc
Q psy15216 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI---YADPREIIWTSGATESNNLAIKGAAHFYKK 84 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~---g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~ 84 (2602)
++++.+.+++.+.+.+....... .+|.......++|+++|+++ ++++++|++|+|+++++..++ .+. .
T Consensus 46 ~~~~~v~~~~~~~~~~~~~~~~~----~~Y~p~~g~~~lr~aia~~~~~~~~~~d~I~it~Ga~~al~~l~-~l~----~ 116 (402)
T TIGR03542 46 PLPASVIEAFHNAVDELASEETF----RGYGPEQGYPFLREAIAENDYRGRIDPEEIFISDGAKCDVFRLQ-SLF----G 116 (402)
T ss_pred CCCHHHHHHHHHHHhcccccccc----cCCCCCCCCHHHHHHHHHHHHhcCCCHHHEEECCCcHHHHHHHH-Hhc----C
Confidence 56788899998887652111100 01111234567889999876 678899999999999999864 444 6
Q ss_pred CCCEEEEcCCCCcccHHHHHHHHhCCc-----------EEEEeccCCC--CccChHHHHhhccCCceEEEEecccCcccc
Q psy15216 85 RGKHIITVQTEHKSVLDSIRKLENDGF-----------RVTYLKPKNN--GLITLSQLEEKICSDTILVSVMLVNNEIGV 151 (2602)
Q Consensus 85 ~gd~Vlv~~~~~~s~~~~~~~~~~~G~-----------~v~~v~~~~~--~~ld~e~l~~~i~~~tklv~i~~~~npTG~ 151 (2602)
+||.|++++|.|+.+...++.. |+ +++.++.++. +.+|++. .++++++++++||||||.
T Consensus 117 ~gd~Vlv~~P~y~~~~~~~~~~---g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~i~l~nP~NPTG~ 188 (402)
T TIGR03542 117 SDNTVAVQDPVYPAYVDSNVMA---GRAGVLDDDGRYSKITYLPCTKENNFIPDLPE-----EPKIDIIYLCSPNNPTGT 188 (402)
T ss_pred CCCEEEEeCCCCcchHHHHHHc---CCccccccccccceEEEeecchhhCCCCCccc-----cCCceEEEEeCCCCCCCc
Confidence 8999999999999988777766 77 8888887543 3333321 257899999999999999
Q ss_pred ccc---HHHHHHHHHhcCCEEEEeccccccc----ccccCCCC----CccEEEeccccccCCCC--cEEEEEecCCCCcc
Q psy15216 152 IQP---ILEIGELCRSKGVIFHCDAAQAVGK----IDINIQNY----KVDLMSFSAHKIYGPKG--IGALYIRRNPRTRI 218 (2602)
Q Consensus 152 ~~~---l~~I~~la~~~g~~livD~a~a~g~----~~~dl~~~----~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l 218 (2602)
+++ +++|+++|++|++++|+|++|+.-. .+..+... +..+++.|++|.+|++| +||++++++++...
T Consensus 189 ~~s~~~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~pGlRiG~~i~~~~l~~~~ 268 (402)
T TIGR03542 189 VLTKEQLKELVDYANEHGSLILFDAAYSAFISDPSLPHSIFEIPGAKECAIEFRSFSKTAGFTGVRLGWTVVPKELTYAD 268 (402)
T ss_pred cCCHHHHHHHHHHHHHcCeEEEEEchhhhhccCCCCCcchhhCCCCcccEEEEecCccccCCCCcceEEEEecHHHhhcc
Confidence 999 6778888999999999999986321 12222111 22467889999999888 89999988765211
Q ss_pred ----cceecCCCccccccccCcchhHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCce
Q psy15216 219 ----EAQIHGGGHEYGLRSGTLATHQIVGMGEAFRL-ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHN 293 (2602)
Q Consensus 219 ----~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~-~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~ 293 (2602)
...... .......+++.+...++..++.- ......+.+..+.+.++.+.+.|.+ .++.+..+.. ...
T Consensus 269 ~~~~~~~~~~---~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~--~~~~~~~~~~---~~f 340 (402)
T TIGR03542 269 GHSVIQDWER---RQCTKFNGASYPVQRAAEAAYAGEGLQPILEAISYYMENARILRKALEA--AGFKVYGGEH---APY 340 (402)
T ss_pred hhhHHHHHHH---HhhhcccCCCHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHh--cCceecCCCc---eeE
Confidence 111000 00001123444444444444431 1123445567777888888888877 3565543321 223
Q ss_pred EEEEEcc-cChhHHHHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 294 LNISFNF-IEGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 294 ~~~~~~~-~~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
.++.++. .+..++...+ .||.+++|..|... ..+++||+++. ++++++..++.|++
T Consensus 341 ~~v~l~~~~~~~~l~~~l~~~~gv~v~pg~~f~~~-----------------~~~~iRis~~~--~~~~l~~~l~~l~~ 400 (402)
T TIGR03542 341 LWVKTPEGISSWDFFDFLLYQYHVVGTPGSGFGPS-----------------GEGFVRFSAFG--KRENIVEACERIKE 400 (402)
T ss_pred EEEECCCCCCHHHHHHHHHHhCCEEEeCchhhCCC-----------------CCCEEEEEecC--CHHHHHHHHHHHHh
Confidence 3444443 3456666665 58999988766321 13799999753 78999999998875
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). |
| >PLN02483 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.4e-19 Score=230.85 Aligned_cols=291 Identities=18% Similarity=0.213 Sum_probs=203.9
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEec
Q psy15216 1434 TAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLK 1513 (2602)
Q Consensus 1434 ~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~ 1513 (2602)
.......++++.+|+++|. ++.+++++| ..++..++.++. ++||+|++++++|+++...++.. |++++.++
T Consensus 143 g~~~~~~ele~~lA~~~g~-~~ai~~~~G-~~an~~~i~al~----~~Gd~Vi~d~~~h~s~~~~~~~~---Ga~v~~~~ 213 (489)
T PLN02483 143 GTTKLHRELEELVARFVGK-PAAIVFGMG-YATNSTIIPALI----GKGGLIISDSLNHNSIVNGARGS---GATIRVFQ 213 (489)
T ss_pred CCcHHHHHHHHHHHHHhCC-CcEEEECCH-HHHHHHHHHHhC----CCCCEEEEcchhhHHHHHHHHHc---CCeEEEEe
Confidence 3456788999999999995 456666554 556666777765 89999999999999987766554 99999997
Q ss_pred cCCCCCcChhHHHhhcc-------CCc-----e-EEEEeccccccccccChHHHHHHhhhcCCEEEEecccccCccc---
Q psy15216 1514 PKNNGLITLSQLEEKIC-------SDT-----I-LVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKID--- 1577 (2602)
Q Consensus 1514 ~~~~~~id~d~l~~~i~-------~~t-----~-lv~l~~~~n~tG~~~~l~~I~~ia~~~gi~vivD~a~~~g~~~--- 1577 (2602)
.+ |++++++.+. ++| + +|++.++.|++|.+.++++|.++|++||+++++|++|+.|...
T Consensus 214 ~~-----d~~~le~~l~~~i~~~~p~t~~p~~k~livve~v~s~~G~~~~l~~I~~la~~~~~~livDEa~s~g~~G~~G 288 (489)
T PLN02483 214 HN-----TPSHLEEVLREQIAEGQPRTHRPWKKIIVIVEGIYSMEGELCKLPEIVAVCKKYKAYVYLDEAHSIGAVGKTG 288 (489)
T ss_pred CC-----CHHHHHHHHHhhhhccccccccCCceEEEEECCCCCCCCcccCHHHHHHHHHHcCCEEEEECcCccCccCCCC
Confidence 54 4555555442 333 4 6666777799999999999999999999999999999865421
Q ss_pred ------ccCCCCCccEEEEccccccCCCceEEEEEecCCCCccccccccCCccccCCCCCcchhHHHHHHHHHHHHHH--
Q psy15216 1578 ------INIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARI-- 1649 (2602)
Q Consensus 1578 ------~~l~~~~~D~~v~S~~K~~gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~-- 1649 (2602)
.++...+.|+++.|+||.+|+.| ||++.++++++.+.....+. ...++.+.+...++.++|+.+..
T Consensus 289 ~g~~~~~~v~~~~~dI~~~SfSKs~g~~G-G~i~~~~~li~~l~~~~~~~-----~~~~~~~p~~~~~~~aaL~~l~~~~ 362 (489)
T PLN02483 289 RGVCELLGVDPADVDIMMGTFTKSFGSCG-GYIAGSKELIQYLKRTCPAH-----LYATSMSPPAVQQVISAIKVILGED 362 (489)
T ss_pred CchHHhcCCCcccCcEEEEecchhcccCc-eEEEcCHHHHHHHHHhCccc-----cccCCcCHHHHHHHHHHHHHHHhCc
Confidence 23333457899999999989887 99999888777765432111 11223444444455577764331
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecCCcHHHHHhc--CCEEEccccccCCCCCCh
Q psy15216 1650 ---EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDIAVSSGSACTSASLEP 1724 (2602)
Q Consensus 1650 ---~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~v~~g~~~~~~~~~~ 1724 (2602)
...+.+++++++++++++.|.+ . |+.+.++.. .|.+..+.+...+..++...| +||.+.+...+..+
T Consensus 363 g~~~~~~~~~~l~~~~~~l~~~L~~-~-G~~v~~~~~--sp~~~l~l~~~~~~~~~~~~Ll~~GI~v~~~~fp~~p---- 434 (489)
T PLN02483 363 GTNRGAQKLAQIRENSNFFRSELQK-M-GFEVLGDND--SPVMPIMLYNPAKIPAFSRECLKQNVAVVVVGFPATP---- 434 (489)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHH-C-CCcccCCCC--CCEEEEEECCHHHHHHHHHHHHHCCcEEeeeCCCCCC----
Confidence 2345677889999999999988 3 666554322 244333333322334555555 79998863222211
Q ss_pred hHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1725 SYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1725 ~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
...+.+|++++..+|.+|+++++++|++
T Consensus 435 ------------~~~~~vRi~isa~~t~edId~~l~~L~~ 462 (489)
T PLN02483 435 ------------LLLARARICISASHSREDLIKALEVISE 462 (489)
T ss_pred ------------CCCceEEEEeCCCCCHHHHHHHHHHHHH
Confidence 1126799999999999999999999997
|
|
| >PRK05839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.6e-18 Score=224.16 Aligned_cols=310 Identities=14% Similarity=0.012 Sum_probs=202.5
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhC--CCCCcEEEeCCHHHHHHHHHHhhhhhhccC
Q psy15216 1404 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIY--ADPREIIWTSGATESNNLAIKGAAHFYKKR 1481 (2602)
Q Consensus 1404 ~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g--~~~~~iv~t~gaT~al~~al~~l~~~~~~~ 1481 (2602)
+.++.+.+++.+.......++.. .+..++.+.+.+.+++.+| +++++|++|+|+++++..++.++.. .++
T Consensus 37 ~~~~~~~~a~~~~~~~~~~Y~~~------~G~~~lr~aia~~l~~~~g~~~~~~~I~it~G~~~al~~~~~~~~~--~~~ 108 (374)
T PRK05839 37 ETPKFIQDALKNNAHLLNKYPKS------AGEESLREAQRGFFKRRFKIELKENELIPTFGTREVLFNFPQFVLF--DKQ 108 (374)
T ss_pred CCCHHHHHHHHHHhhccCCCCCC------CCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHHhc--CCC
Confidence 45677888887765443333332 1111233333344444446 5789999999999999988887640 147
Q ss_pred CCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCC--CCcChhHHHhhccCCceEEEEeccccccccccC---hHHHHH
Q psy15216 1482 GKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN--GLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIGE 1556 (2602)
Q Consensus 1482 gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~--~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~---l~~I~~ 1556 (2602)
||.|+++.|.|+.+...+... |++++.++.+.+ +.+|+++. .+ +++++|++++||||||.+++ +++|++
T Consensus 109 gd~vlv~~P~y~~~~~~~~~~---g~~v~~v~~~~~~~~~~d~~~~--~~-~~~k~v~i~nP~NPTG~~~s~~~l~~i~~ 182 (374)
T PRK05839 109 NPTIAYPNPFYQIYEGAAIAS---RAKVLLMPLTKENDFTPSLNEK--EL-QEVDLVILNSPNNPTGRTLSLEELIEWVK 182 (374)
T ss_pred CCEEEECCCCchhhHHHHHhc---CCEEEEeecccccCCcCCcchh--hh-ccccEEEEeCCCCCcCcccCHHHHHHHHH
Confidence 999999999999988777655 999999998643 44554433 22 57999999999999999999 667888
Q ss_pred HhhhcCCEEEEecccccCcc--cc-cC---------CCCCccEEEEccccccCCCc--eEEEEEecCCCCccccccccCC
Q psy15216 1557 LCRSKGVIFHCDAAQAVGKI--DI-NI---------QNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGG 1622 (2602)
Q Consensus 1557 ia~~~gi~vivD~a~~~g~~--~~-~l---------~~~~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~~g~~ 1622 (2602)
+|++||+++|+|++++.-.. +. .+ ...+.-+++.||+|.+|.+| +||++.++++++.+....
T Consensus 183 ~~~~~~~~ii~DE~Y~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~ii~~~~~~~~~~~~~---- 258 (374)
T PRK05839 183 LALKHDFILINDECYSEIYENTPPPSLLEASILVGNESFKNVLVINSISKRSSAPGLRSGFIAGDASILKKYKAYR---- 258 (374)
T ss_pred HHHHcCCEEEeccchhhcccCCCCCCHhhhhcccCccccCcEEEEeccccccCCccceeEEEecCHHHHHHHHHHH----
Confidence 89999999999999763110 11 11 11123477889999888888 899999877666554322
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecCCcHHH
Q psy15216 1623 HEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESL 1702 (2602)
Q Consensus 1623 ~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~ 1702 (2602)
.....+.+...+.++..++.. ...++..++++.++++++.+.|. +. .+ ..+.++++...+..++
T Consensus 259 ---~~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~l~-----~~---~p----~gg~fi~~~~~~~~~~ 322 (374)
T PRK05839 259 ---TYLGCASPLPLQKAAAVAWLD-DEHAEFFRNIYAKNLKLAREILG-----IT---IP----PATFYVWLPVDNDEEF 322 (374)
T ss_pred ---hhcCCCCChHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHHHhcC-----CC---CC----CeeEEEEEeCCChHHH
Confidence 011123333334444444431 33456666777777776665541 11 11 1233444443355666
Q ss_pred HHhc---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1703 LMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1703 ~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
...| +||.+.+|..|... ....+++|||++. +.+++..++++|++
T Consensus 323 ~~~l~~~~gi~v~pg~~f~~~---------------~~~~~~iRis~~~--~~~~~~~~l~~l~~ 370 (374)
T PRK05839 323 TKKLYQNEGIKVLPGSFLGRN---------------GIGKGYVRIALVY--DTPKLEKALEIIKT 370 (374)
T ss_pred HHHHHHHCCEEEeCchhhCCC---------------CCCCCeEEEEecC--CHHHHHHHHHHHHH
Confidence 6555 69999998766431 0113899999974 68999999999986
|
|
| >PRK11325 scaffold protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-20 Score=198.69 Aligned_cols=96 Identities=88% Similarity=1.338 Sum_probs=89.3
Q ss_pred hhhHhhhhcccCCCCCCCCCCCCCcceeeeeCCCCcccEEEEEEEEcCCCceEeeeeeccccchhHhhHHHHHHHHcCCC
Q psy15216 374 SYSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKTYGCGSAIASSSLVTEWVKGKT 453 (2602)
Q Consensus 374 ~y~~~~~~hy~~p~n~g~~~~~~~~~~~~~~~~~~cgd~~~~~~~~~~~~~i~~~~~~~~gc~~~~a~~s~~~~~~~g~~ 453 (2602)
+|++++++||+||+|.|.+++++...+.|+.+||.|||.|+|||+|+++|+|+|++|+++||++++||||+++|+++|||
T Consensus 2 ~Y~~~il~h~~~P~n~G~l~~~~~~~~~~~~~np~CGD~i~l~l~v~~~~~I~d~~f~~~GC~is~Asas~~~e~~~Gkt 81 (127)
T PRK11325 2 AYSEKVIDHYENPRNVGSFDKNDPNVGTGMVGAPACGDVMKLQIKVNDEGIIEDAKFKTYGCGSAIASSSLVTEWVKGKT 81 (127)
T ss_pred ccHHHHHHHHhCcCCCCCCCCCccccceEEecCCCCccEEEEEEEECCCCeEEEEEEEeeCCHHHHHHHHHHHHHHcCCC
Confidence 79999999999999999999887555788899999999999999997578999999999999999999999999999999
Q ss_pred hhhhhhccccchhhhh
Q psy15216 454 LDEAMSIKNTDIAEEL 469 (2602)
Q Consensus 454 ~~e~~~i~~~~i~~~l 469 (2602)
++|+..|+..++.+.+
T Consensus 82 l~ea~~i~~~~i~~~l 97 (127)
T PRK11325 82 LDEALAIKNTDIAEEL 97 (127)
T ss_pred HHHHHhcCHHHHHHHc
Confidence 9999999998777654
|
|
| >PRK09275 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-18 Score=225.92 Aligned_cols=281 Identities=13% Similarity=0.090 Sum_probs=187.6
Q ss_pred CcEEEeCCHHHHHHHHHHhhhh-hhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCC--CCCcChhHHHhhccC
Q psy15216 1455 REIIWTSGATESNNLAIKGAAH-FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICS 1531 (2602)
Q Consensus 1455 ~~iv~t~gaT~al~~al~~l~~-~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~id~d~l~~~i~~ 1531 (2602)
++|++|+|+++|+..+++++.. ..++|||+|++++|.|+.|....... ..|.+++.++.++ ++.+|++++++++++
T Consensus 162 ~~I~vT~Ga~~al~~~~~aL~~~~ll~pGD~Vlv~~P~y~~Y~~~~~l~-g~~~~~v~v~~~~~~~f~~d~~~l~~~~~~ 240 (527)
T PRK09275 162 FDLFAVEGGTAAMCYIFDSLKENGLLKAGDKIALMTPIFTPYLEIPELP-RYDLEVVHINADEENEWQYPDSELEKLRDP 240 (527)
T ss_pred CeEEEeCCHHHHHHHHHHHHhhhhcCCCCCEEEEeCCChHHHHHHHHHc-CCCeEEEEeecCcccCCCCCHHHHHhhcCC
Confidence 3899999999999999987411 12489999999999999988776655 2245566665543 477999999999999
Q ss_pred CceEEEEeccccccccccC---hHHHHHHhhh--cCCEEEEecccccCc-ccccCCC-C-CccEEEEccccccCCCc--e
Q psy15216 1532 DTILVSVMLVNNEIGVIQP---ILEIGELCRS--KGVIFHCDAAQAVGK-IDINIQN-Y-KVDLMSFSAHKIYGPKG--I 1601 (2602)
Q Consensus 1532 ~t~lv~l~~~~n~tG~~~~---l~~I~~ia~~--~gi~vivD~a~~~g~-~~~~l~~-~-~~D~~v~S~~K~~gp~G--~ 1601 (2602)
+|++|++++|+||||.+++ +++|+++|++ +++++|+|+++..-. ...++.. + ...+++.||+|.||++| +
T Consensus 241 ~tkai~l~nP~NPTG~v~s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~~~s~~~~~~~~~I~v~SfSK~f~mtG~Rl 320 (527)
T PRK09275 241 SIKALFLVNPSNPPSVAMSDESLEKIADIVNEKRPDLMIITDDVYGTFVDDFRSLFAVLPYNTILVYSFSKYFGATGWRL 320 (527)
T ss_pred CCCEEEEeCCcCCcCCCCCHHHHHHHHHHHHhcCCCcEEEECCCChhhcccccCHHHhCCCCEEEEeehhhhccCcHhHH
Confidence 9999999999999999999 7788888954 599999999985321 1111111 1 23577889999999999 8
Q ss_pred EEEEEecC-----CCCcc--------ccccccC-----------------CccccCCCCCcchhHHHH-----HHHHHHH
Q psy15216 1602 GALYIRRN-----PRTRI--------EAQIHGG-----------------GHEYGLRSGTLATHQIVG-----MGEAFRL 1646 (2602)
Q Consensus 1602 G~l~~~~~-----~~~~l--------~~~~~g~-----------------~~~~~~~~gt~~~~~~~a-----l~~aL~~ 1646 (2602)
||++++++ +++.+ ...+..- ..-......+.+.+++.+ +.++++.
T Consensus 321 G~i~~~~~~v~~~~i~~l~~~~~~~~~~ry~~~~~~p~~~~fidrlvad~~~v~~~~t~~~s~p~Q~a~al~~~~all~~ 400 (527)
T PRK09275 321 GVIALHEDNVFDKLIAKLPEEKKKELDKRYSSLTTDPEKLKFIDRLVADSRQVALNHTAGLSTPQQVQMALFSLFALLDE 400 (527)
T ss_pred hhhhcCchhHHHHHHHhccHHHHHHHHhhhhhccCCcchhhhHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhC
Confidence 99999876 33222 0000000 000011123344444443 2233433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecC--------------------CcHHHHHhc
Q psy15216 1647 ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI--------------------EGESLLMAI 1706 (2602)
Q Consensus 1647 ~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~L 1706 (2602)
.....+..++.++++++.+.+.|.. .+... .|.+.++.+... +..+++..|
T Consensus 401 ~~~~~~~~~~~~~~Rr~~l~~~Lg~---~~~~~------~p~g~fY~~~di~~~~~~~~g~~f~~~l~~~~~~~~f~~~L 471 (527)
T PRK09275 401 EDAYKKAMKDIIRRRYKALYEGLGL---PEPED------PNNAAYYTLIDLEEWAEKNYGKEFADYLKKNYSPVDLLFRL 471 (527)
T ss_pred chHHHHHHHHHHHHHHHHHHHHcCC---CCcCC------CCCeeEEEEEEhHHhhhhccCchhhhhhhccCCHHHHHHHH
Confidence 3345667777888888888877721 11111 123333333321 234555555
Q ss_pred ---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1707 ---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1707 ---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
.+|.+.||..|+.+ .+++|+|+.. .+++++..+.++|++
T Consensus 472 l~e~gV~v~PG~~Fg~~------------------~~~vRis~a~-~~~~~~~~~~~rl~~ 513 (527)
T PRK09275 472 AEETGVVLLPGGGFGGP------------------EWSVRVSLAN-LNEEDYAKIGKAIRK 513 (527)
T ss_pred HhcCCEEEeCchhhCCC------------------CCeEEEEEec-CCHHHHHHHHHHHHH
Confidence 69999999988643 2789999963 367899999999997
|
|
| >PRK06767 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.3e-19 Score=227.99 Aligned_cols=308 Identities=17% Similarity=0.132 Sum_probs=208.8
Q ss_pred cchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHHHH-HhCCc
Q psy15216 33 HIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDGF 111 (2602)
Q Consensus 33 ~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~-~~~G~ 111 (2602)
+.+++...+..+++++.+|+++|.+ ..++++|++.|+..++.++. ++||+|+++.+.|++....+... .+.|+
T Consensus 53 ~~y~r~~~pt~~~Le~~lA~l~G~~--~al~~~sG~~Ai~~~l~al~----~~Gd~Vv~~~~~y~~~~~~~~~~~~~~gi 126 (386)
T PRK06767 53 YIYSRLGNPTVKLFEERMAVLEGGE--EALAFGSGMAAISATLIGFL----KAGDHIICSNGLYGCTYGFLEVLEEKFMI 126 (386)
T ss_pred ccccCCCCcchHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHHh----CCCCEEEEcCCcHHHHHHHHHHHHhhcCe
Confidence 3344434456789999999999964 44556666789999988887 89999999999999877766554 45677
Q ss_pred EEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHhcCCEEEEecccccccccccCCCCCccE
Q psy15216 112 RVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDL 191 (2602)
Q Consensus 112 ~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~~g~~livD~a~a~g~~~~dl~~~~~D~ 191 (2602)
++.+++. .|+++++++++++|++|++++|+||||.+.|+++|.++|+++|+++++|++++.+....++ ..++|+
T Consensus 127 ~~~~~~~-----~d~~~l~~~i~~~tklV~lesp~NptG~v~dl~~I~~la~~~g~~vivD~a~a~~~~~~pl-~~g~Di 200 (386)
T PRK06767 127 THSFCDM-----ETEADIENKIRPNTKLIFVETPINPTMKLIDLKQVIRVAKRNGLLVIVDNTFCSPYLQRPL-ELGCDA 200 (386)
T ss_pred EEEEeCC-----CCHHHHHHhhCcCceEEEEeCCCCCCceecCHHHHHHHHHHcCCEEEEECCCcccccCCch-hcCCcE
Confidence 7777654 3789999999999999999999999999999999999999999999999999876654443 357899
Q ss_pred EEeccccccCCCC---cEEEEEecCCCCcccceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy15216 192 MSFSAHKIYGPKG---IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKR 268 (2602)
Q Consensus 192 ~~~S~~K~~Gp~G---~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~ 268 (2602)
+++|++|+++.+| .|+++.+++.+..+..... ....+..+....+.+..+|+ .+..+.++.++++.+
T Consensus 201 v~~S~sK~l~g~g~~~gG~v~~~~~~i~~~~~~~~------~~~g~~~~~~~a~l~~~~L~----tl~~r~~~~~~~a~~ 270 (386)
T PRK06767 201 VVHSATKYIGGHGDVVAGVTICKTRALAEKIRPMR------KDIGGIMAPFDAWLLLRGLK----TLAVRMDRHCDNAEK 270 (386)
T ss_pred EEecCcceecCCCCceeEEEEeChHHHHHHHHHHH------HHhCCCCCHHHHHHHHcCCC----cHHHHHHHHHHHHHH
Confidence 9999999877666 5899998876655422111 00112222222222222332 234566777888889
Q ss_pred HHHHHhhccCceEEeCCCCC--------CCCceEEEEEccc--ChhHHHHHh--CCeEEcccccCCCC-------CC-Ch
Q psy15216 269 LYNGLMESIEEIYINGDMNN--------RIPHNLNISFNFI--EGESLLMAI--KDIAVSSGSACTSA-------SL-EP 328 (2602)
Q Consensus 269 l~~~L~~~~~g~~l~~~~~~--------~~~~~~~~~~~~~--~~~~~~~~L--~gI~v~~g~~~~~~-------~~-~~ 328 (2602)
+.+.|.+ .|++..+..|.+ ....++.|.+.+. +...+++.| .++.++-|...+-- |. .+
T Consensus 271 la~~L~~-~p~v~~v~~p~~~~~~~~~~~~gg~vsf~l~~~~~~~~~f~~~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~ 349 (386)
T PRK06767 271 IVSFLKN-HDAVEGVWYPEGELASRQMKRGGGVISFSIKGGKEETQAFINDLHFITIAVSLGDTETLIQHPATMTHAAIP 349 (386)
T ss_pred HHHHHHc-CCCccEEECCCcHHHHHhCCCCCceEEEEEcCCHHHHHHHHHhCCccEEecCCCCcCccccCCCccccccCC
Confidence 9999987 788774332211 1233455555432 345778777 56677766433311 00 01
Q ss_pred HHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHH
Q psy15216 329 SYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK 367 (2602)
Q Consensus 329 ~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~ 367 (2602)
.-.....|+. ++.||+|+|....++-++.+-++|.
T Consensus 350 ~~~~~~~gi~----~~l~R~svGlE~~~dl~~dl~~al~ 384 (386)
T PRK06767 350 AELRQEMGIY----DNLIRLSVGLESWEDIVSDLEQALK 384 (386)
T ss_pred HHHHHhcCCC----CCeEEEEeccCCHHHHHHHHHHHHh
Confidence 1122345655 3789999997554444444444443
|
|
| >PRK05958 8-amino-7-oxononanoate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.9e-19 Score=229.01 Aligned_cols=315 Identities=20% Similarity=0.191 Sum_probs=217.7
Q ss_pred CCCHHHHHHHHHHHhhcc-CCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCC
Q psy15216 1404 PIDPRVVDKMIPYLRVQF-GNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRG 1482 (2602)
Q Consensus 1404 ~~~~~v~eal~~~l~~~~-~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~g 1482 (2602)
..++.+++++.+.+.... +++. +...+.......++++.++++++. + +.++++++++++..++.++. ++|
T Consensus 53 ~~~~~v~~a~~~~~~~~~~~~~~---~~~~~g~~~~~~~l~~~la~~~~~-~-~~i~~~~g~~~~~~~l~~~~----~~g 123 (385)
T PRK05958 53 ARHPRLIAAAQQAARRYGAGSGG---SRLVTGNSPAHEALEEELAEWFGA-E-RALLFSSGYAANLAVLTALA----GKG 123 (385)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCC---cCcccCCcHHHHHHHHHHHHHhCC-C-cEEEECcHHHHHHHHHHHhC----CCC
Confidence 356889999999886522 1211 121222344678899999999994 3 44555566777777766665 899
Q ss_pred CEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccC---CceEEEEeccccccccccChHHHHHHhh
Q psy15216 1483 KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS---DTILVSVMLVNNEIGVIQPILEIGELCR 1559 (2602)
Q Consensus 1483 d~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~---~t~lv~l~~~~n~tG~~~~l~~I~~ia~ 1559 (2602)
|+|+++++.|+++...+... |++++.++. .|++++++++++ ++.++++.+++|++|...|+++|.++|+
T Consensus 124 d~V~~~~~~~~~~~~~~~~~---g~~~~~~~~-----~d~~~l~~~i~~~~~~~~lvi~~~~~~~~G~~~~l~~i~~ia~ 195 (385)
T PRK05958 124 DLIVSDKLNHASLIDGARLS---RARVRRYPH-----NDVDALEALLAKWRAGRALIVTESVFSMDGDLAPLAELVALAR 195 (385)
T ss_pred CEEEEeCccCHHHHHHHHhc---CCceEEeCC-----CCHHHHHHHHHhccCCCeEEEEEecccCCCCcCCHHHHHHHHH
Confidence 99999999999988776554 888888764 378999999875 3677888889999999999999999999
Q ss_pred hcCCEEEEecccccCcccc---------cCCCCCccEEEEccccccCCCceEEEEEecCCCCccccccccCCccccCCCC
Q psy15216 1560 SKGVIFHCDAAQAVGKIDI---------NIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSG 1630 (2602)
Q Consensus 1560 ~~gi~vivD~a~~~g~~~~---------~l~~~~~D~~v~S~~K~~gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~g 1630 (2602)
+||+++|+|++|+.|.... ++.....++++.|+||.+|++| |+++.++++.+.+..... .. ...+
T Consensus 196 ~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-g~~~~~~~~~~~~~~~~~----~~-~~~~ 269 (385)
T PRK05958 196 RHGAWLLVDEAHGTGVLGPQGRGLAAEAGLAGEPDVILVGTLGKALGSSG-AAVLGSETLIDYLINRAR----PF-IFTT 269 (385)
T ss_pred HhCCEEEEECcccccccCCCCCchHHhhCCCCCCceEEEEechhhcccCC-cEEEcCHHHHHHHHHhCc----cc-eecC
Confidence 9999999999997654321 1222234588899999889887 888888765544322110 00 1122
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEec-CCcHHHHHhc--C
Q psy15216 1631 TLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGESLLMAI--K 1707 (2602)
Q Consensus 1631 t~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~L--~ 1707 (2602)
..+..++.++.++++..... +...+++.++++++.+.|.+ . ++.+..+ . ..+..+.++. .+..++...| +
T Consensus 270 ~~~~~~~aa~~aal~~~~~~-~~~~~~~~~~~~~l~~~L~~-~-~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~l~~~ 342 (385)
T PRK05958 270 ALPPAQAAAARAALRILRRE-PERRERLAALIARLRAGLRA-L-GFQLMDS-Q---SAIQPLIVGDNERALALAAALQEQ 342 (385)
T ss_pred CCCHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHH-c-CCCcCCC-C---CCEEEEEeCCHHHHHHHHHHHHHC
Confidence 34556666676778755433 56788889999999999987 2 4443321 1 2233333432 2334566666 7
Q ss_pred CEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1708 DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1708 gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
||.++++..+..+ ...+++|++++.+++.+++++++++|++
T Consensus 343 gI~v~~~~~~~~~----------------~~~~~lRis~~~~~~~~~i~~~l~~l~~ 383 (385)
T PRK05958 343 GFWVGAIRPPTVP----------------AGTSRLRITLTAAHTEADIDRLLEALAE 383 (385)
T ss_pred CceEecccCCCCC----------------CCCceEEEEecCCCCHHHHHHHHHHHHh
Confidence 8999764322111 0126899999999999999999999986
|
|
| >PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.5e-19 Score=226.13 Aligned_cols=299 Identities=14% Similarity=0.109 Sum_probs=203.3
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHh----C---CCCCcEEEeCCHHHHHHHHHHhccc
Q psy15216 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI----Y---ADPREIIWTSGATESNNLAIKGAAH 80 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~----g---~~~~~Iv~t~g~T~al~~~~~~l~~ 80 (2602)
+.++.+.+++.+.... ..++.. . ...++|+++++++ | +++++|++|+|+++++..++..+.
T Consensus 40 ~~~~~~~~~~~~~~~~-~~Y~~~------~----G~~~lr~~ia~~l~~~~~~~~~~~~~I~it~G~~~~i~~~~~~l~- 107 (364)
T PRK07865 40 PVPPVIQEALAAAADA-PGYPTT------A----GTPELREAIVGWLARRRGVTGLDPAAVLPVIGSKELVAWLPTLLG- 107 (364)
T ss_pred CCCHHHHHHHHHHHhh-CCCCCc------c----CCHHHHHHHHHHHHHHcCCCCCCcccEEEccChHHHHHHHHHHHc-
Confidence 3456777777665432 223321 1 1234555555555 4 568899999999999999888772
Q ss_pred ccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccH---HH
Q psy15216 81 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPI---LE 157 (2602)
Q Consensus 81 ~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l---~~ 157 (2602)
+++||.|+++.|.|+++...+..+ |++++.++ +++++. .++++++++++|+||||.+++. ++
T Consensus 108 --~~~gd~Vl~~~p~y~~~~~~~~~~---g~~~~~~~-------~~~~l~---~~~~~~v~~~~p~NPtG~~~~~~~~~~ 172 (364)
T PRK07865 108 --LGPGDVVVIPELAYPTYEVGARLA---GATVVRAD-------SLTELG---PQRPALIWLNSPSNPTGRVLGVDHLRK 172 (364)
T ss_pred --CCCCCEEEECCCCcccHHHHHHhc---CCEEEecC-------ChhhCC---cccceEEEEcCCCCCCCccCCHHHHHH
Confidence 279999999999999988777665 88888875 233332 2678999999999999999984 56
Q ss_pred HHHHHHhcCCEEEEecccccccc---ccc-CC------CCCccEEEeccccccCCCC--cEEEEEecCCCCcccceecCC
Q psy15216 158 IGELCRSKGVIFHCDAAQAVGKI---DIN-IQ------NYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGG 225 (2602)
Q Consensus 158 I~~la~~~g~~livD~a~a~g~~---~~d-l~------~~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g~ 225 (2602)
|.++|++||+++|+|++|+.... ++. +. .....+++.|++|.+|.+| +||++.++++++.+.....
T Consensus 173 i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~i~~~~~~~~~~~~~~~-- 250 (364)
T PRK07865 173 VVAWARERGAVVASDECYLELGWDAEPVSILDPRVCGGDHTGLLAVHSLSKQSNLAGYRAGFVAGDPALVAELLEVRK-- 250 (364)
T ss_pred HHHHHHHcCCEEEEecchhhhccCCCCCccccccccCCccceEEEEeechhccCCCceeeEEEecCHHHHHHHHHHHH--
Confidence 78888999999999999863211 111 10 1123488889999988887 8999998877766653221
Q ss_pred CccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEc-ccChh
Q psy15216 226 GHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN-FIEGE 304 (2602)
Q Consensus 226 ~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~-~~~~~ 304 (2602)
....+.+.+...++..+++. ..+.++.++++.++++.+.+.|.+ .|+.+..++. ..++++. ..+..
T Consensus 251 -----~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~l~~~L~~--~g~~~~~~~~-----~~~~~~~~~~~~~ 317 (364)
T PRK07865 251 -----HAGMMVPAPVQAAMVAALGD-DAHVREQRERYARRRAVLRPALEA--AGFRVDHSEA-----GLYLWATRGEDCW 317 (364)
T ss_pred -----hcCCCcCHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHH--cCCcccCCCc-----cEEEEEeCCCCHH
Confidence 11223444455555555542 244667778888888999999977 3655543322 2233333 23445
Q ss_pred HHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHH
Q psy15216 305 SLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK 367 (2602)
Q Consensus 305 ~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~ 367 (2602)
++...| +||.+.+|..+.+. ..+++||+++. +++++++++++|+
T Consensus 318 ~~~~~l~~~gv~v~pg~~f~~~-----------------~~~~iRi~~~~--~~~~~~~~~~~l~ 363 (364)
T PRK07865 318 DTVAWLAERGILVAPGDFYGPA-----------------GAQHVRVALTA--TDERIAAAVERLA 363 (364)
T ss_pred HHHHHHHHCCEEEeCccccCcC-----------------CCCEEEEEecC--CHHHHHHHHHHhh
Confidence 555555 79999988755321 13799999974 6899999998885
|
|
| >PRK13392 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-18 Score=228.45 Aligned_cols=318 Identities=18% Similarity=0.164 Sum_probs=215.2
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCC
Q psy15216 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK 87 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd 87 (2602)
..+|.+++++.+.+.....+++. ... -+...+...++++++|+++|. ++.+++++| ++|+..++..+.. ..+|+
T Consensus 60 ~~~p~v~~a~~~~~~~~~~~~~~-s~~-~~~~~~~~~~Le~~la~~~g~-~~~i~~~sG-~~a~~~~i~~l~~--~~~g~ 133 (410)
T PRK13392 60 GQHPDVIGAMVDALDRYGAGAGG-TRN-ISGTSHPHVLLERELADLHGK-ESALLFTSG-YVSNDAALSTLGK--LLPGC 133 (410)
T ss_pred CCCHHHHHHHHHHHHHcCCCCch-hhh-cccChHHHHHHHHHHHHHhCC-CCEEEECcH-HHHHHHHHHHHhc--CCCCC
Confidence 46789999999988753222211 111 111223467899999999996 455666665 6777777776641 24789
Q ss_pred EEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhc----cCCceEEEEecccCcccccccHHHHHHHHH
Q psy15216 88 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKI----CSDTILVSVMLVNNEIGVIQPILEIGELCR 163 (2602)
Q Consensus 88 ~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i----~~~tklv~i~~~~npTG~~~~l~~I~~la~ 163 (2602)
.|+++...|+++...+.. .|++++.++.+ |.+++++.+ .++|++|++++|+||||.+.|+++|.++|+
T Consensus 134 ~vi~~~~~h~s~~~~~~~---~g~~~~~~~~~-----d~~~l~~~l~~~~~~~t~~v~i~~~~n~tG~~~~l~~i~~l~~ 205 (410)
T PRK13392 134 VILSDALNHASMIEGIRR---SGAEKQVFRHN-----DLADLEEQLASVDPDRPKLIAFESVYSMDGDIAPIEAICDLAD 205 (410)
T ss_pred EEEEehhhhHHHHHHHHH---cCCeEEEEeCC-----CHHHHHHHHHhccCCCCEEEEEeCCCCCCcccccHHHHHHHHH
Confidence 999988889887665543 48888777532 344444444 368999999999999999999999999999
Q ss_pred hcCCEEEEecccccccccc---------cCCCCCccEEEeccccccCCCCcEEEEEecCCCCcccceecCCCcccccccc
Q psy15216 164 SKGVIFHCDAAQAVGKIDI---------NIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSG 234 (2602)
Q Consensus 164 ~~g~~livD~a~a~g~~~~---------dl~~~~~D~~~~S~~K~~Gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~g 234 (2602)
+||+++++|++|+.|.... ++. ..+|+++.|++|.+|..| ||+++++++++.++....++ . ...
T Consensus 206 ~~~~~livDea~~~g~~g~~g~g~~~~~~~~-~~~div~~tlsK~~g~~G-G~~~~~~~~~~~l~~~~~~~----~-~s~ 278 (410)
T PRK13392 206 RYNALTYVDEVHAVGLYGARGGGIAERDGLM-DRIDMIQGTLAKAFGCLG-GYIAASADLIDFVRSFAPGF----I-FTT 278 (410)
T ss_pred HcCCEEEEECCccccCcCCCCCchhhhccCC-CCCcEEEEEChHhhhccc-chhhcCHHHHHHHHHhCcch----h-ccC
Confidence 9999999999998654311 111 135788899999888887 89988887766554332111 1 122
Q ss_pred CcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEccc-ChhHHHHHh---
Q psy15216 235 TLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI-EGESLLMAI--- 310 (2602)
Q Consensus 235 t~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~L--- 310 (2602)
+.+....+++.++|+.... .....+++.++++++.+.|.+ .|+.+..+.. +++.+.++.. +..++.+.|
T Consensus 279 ~~~~~~~~a~~aaL~~~~~-~~~~~~~~~~~~~~l~~~L~~--~g~~~~~~~~----~~~~i~~~~~~~~~~~~~~L~~~ 351 (410)
T PRK13392 279 ALPPAVAAGATAAIRHLKT-SQTERDAHQDRVAALKAKLNA--NGIPVMPSPS----HIVPVMVGDPTLCKAISDRLMSE 351 (410)
T ss_pred cCCHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHH--cCCCCCCCCC----CEEEEEeCCHHHHHHHHHHHHHh
Confidence 3444556777788885443 334557778888999999977 3665543221 2333333321 234566655
Q ss_pred CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 311 KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 311 ~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
+||.+++......+ ....++||+++.++|++|+++++++|++.
T Consensus 352 ~GI~v~~~~~p~~~----------------~~~~~lRis~~~~~t~edid~l~~aL~~~ 394 (410)
T PRK13392 352 HGIYIQPINYPTVP----------------RGTERLRITPTPLHDDEDIDALVAALVAI 394 (410)
T ss_pred CCEEEeeeCCCCCC----------------CCCceEEEEECCCCCHHHHHHHHHHHHHH
Confidence 59999865322111 01268999999999999999999999864
|
|
| >TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-18 Score=228.15 Aligned_cols=315 Identities=16% Similarity=0.141 Sum_probs=220.0
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCC
Q psy15216 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK 87 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd 87 (2602)
++++.+.+++.+.+.... ... +.+.......+..+++++++++++|.+ ..+++++| ++++..++.++. ++||
T Consensus 47 ~~~~~~~~a~~~~~~~~~-~~~-~~~~~~~g~~~l~~~l~~~l~~~~g~~-~~i~~~sG-~~a~~~a~~~~~----~~gd 118 (385)
T TIGR01825 47 ADHPRLKEAAAQAIQQYG-VGA-GAVRTIAGTLRLHEELEEKLAKFKKTE-AALVFQSG-FNTNQGVLSALL----RKGD 118 (385)
T ss_pred CCCHHHHHHHHHHHHHcC-CCC-CccCcccCCcHHHHHHHHHHHHHhCCC-cEEEECcH-HHHHHHHHHHhC----CCCC
Confidence 478888999988876421 111 111111223467889999999999964 46777766 667777777776 8999
Q ss_pred EEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhcc----CCceEEEEecccCcccccccHHHHHHHHH
Q psy15216 88 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKIC----SDTILVSVMLVNNEIGVIQPILEIGELCR 163 (2602)
Q Consensus 88 ~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~----~~tklv~i~~~~npTG~~~~l~~I~~la~ 163 (2602)
+|+++.+.|+++...+... |+++..++ .+|++++++.+. ++++++++++++|+||.+.|+++|.++|+
T Consensus 119 ~vi~~~~~~~~~~~~~~~~---g~~~~~~~-----~~d~~~l~~~l~~~~~~~~~~v~~~~v~~~tG~~~~~~~i~~l~~ 190 (385)
T TIGR01825 119 IVLSDELNHASIIDGLRLT---KATKKIYK-----HADMDDLDRVLRENPSYGKKLIVTDGVFSMDGDVAPLPEIVELAE 190 (385)
T ss_pred EEEEEccccHHHHHHHHhc---CCceEEeC-----CCCHHHHHHHHHhhccCCCeEEEEecCCcCCCCccCHHHHHHHHH
Confidence 9999999999987666544 77776654 467888888765 36899999999999999999999999999
Q ss_pred hcCCEEEEeccccccccc---------ccCCCCCccEEEeccccccCCCCcEEEEEecCCCCcccceecCCCcccccc-c
Q psy15216 164 SKGVIFHCDAAQAVGKID---------INIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLR-S 233 (2602)
Q Consensus 164 ~~g~~livD~a~a~g~~~---------~dl~~~~~D~~~~S~~K~~Gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~-~ 233 (2602)
+||+++|+|++|+.+..+ +++. .+.++++.|+||.+|++| ||++.++++++.+..... .+. .
T Consensus 191 ~~~~~li~De~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~g-G~~~~~~~~~~~~~~~~~------~~~~~ 262 (385)
T TIGR01825 191 RYGAVTYVDDAHGSGVMGEAGRGTVHHFGLE-DKVDIQVGTLSKAIGVVG-GYAAGHKELIEYLKNRAR------PFLFS 262 (385)
T ss_pred HhCCEEEEECcccccCcCCCCCccHhhcCCC-cCCcEEEEeccHHhhcCC-CEEecCHHHHHHHHHhCc------ccccc
Confidence 999999999999765432 2332 457899999999888877 899888776666543211 111 2
Q ss_pred cCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc-cChhHHHHHh--
Q psy15216 234 GTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGESLLMAI-- 310 (2602)
Q Consensus 234 gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~L-- 310 (2602)
+..+...++++.++++..... .+..++..++++++.+.|.+ .++++..+.. + ...+.++. .+..++...|
T Consensus 263 ~~~~~~~~~a~~~al~~~~~~-~~~~~~~~~~~~~l~~~L~~--~g~~~~~~~~---~-~~~~~~~~~~~~~~~~~~L~~ 335 (385)
T TIGR01825 263 TAQPPAVVAALAAAVDELQRS-PELMERLWDNTRFFKAGLGK--LGYDTGGSET---P-ITPVVIGDEKAAQEFSRRLFD 335 (385)
T ss_pred CCCCHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHH--cCCCCCCCCC---C-EEEEEECCHHHHHHHHHHHHH
Confidence 234556666777788754332 34667778888999999977 3666554322 2 22333332 2345666666
Q ss_pred CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 311 KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 311 ~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
+||.+++......+ ...++||++++.+++++|+++++++|++.
T Consensus 336 ~gi~v~~~~~~~~~----------------~~~~~iRi~~~~~~~~e~i~~~~~~l~~~ 378 (385)
T TIGR01825 336 EGIFAQSIVFPTVP----------------RGTARIRNIPTAEHTKDDLDQALDAYEKV 378 (385)
T ss_pred CCcEEcccCCCCCC----------------CCCceEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 78888633221111 11268999999999999999999999864
|
This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions. |
| >PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.2e-19 Score=230.72 Aligned_cols=316 Identities=16% Similarity=0.163 Sum_probs=221.5
Q ss_pred CCCHHHHHHHHHHHhhh-cCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCC
Q psy15216 8 PIDPRVVDKMIPYLRVQ-FGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRG 86 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~-~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~g 86 (2602)
++++.+.+++.+.+... +.++.. .......+..+++++++++++|.+ ++|++++| ++++..++.++. ++|
T Consensus 56 ~~~~~i~~a~~~~~~~~~~~~~~~---~~~~G~~~l~~~l~~~la~~~g~~-~~i~~tsG-~~a~~~~~~~l~----~~g 126 (397)
T PRK06939 56 ANHPELIAAAKAALDSHGFGMASV---RFICGTQDLHKELEEKLAKFLGTE-DAILYSSC-FDANGGLFETLL----GKE 126 (397)
T ss_pred CCCHHHHHHHHHHHHHcCCCCccc---ccccCCcHHHHHHHHHHHHHhCCC-cEEEEcCh-HHHHHHHHHHhC----CCC
Confidence 36888999999888652 112211 111223457789999999999975 67777777 778888888876 899
Q ss_pred CEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccC------CceEEEEecccCcccccccHHHHHH
Q psy15216 87 KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS------DTILVSVMLVNNEIGVIQPILEIGE 160 (2602)
Q Consensus 87 d~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~------~tklv~i~~~~npTG~~~~l~~I~~ 160 (2602)
|+|+++++.|+++...+..+ |++++.++. .|++++++.+++ ++++|++.+++|++|.+.++++|.+
T Consensus 127 d~vi~~~~~~~~~~~~~~~~---~~~~~~~~~-----~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~~G~~~~~~~l~~ 198 (397)
T PRK06939 127 DAIISDALNHASIIDGVRLC---KAKRYRYAN-----NDMADLEAQLKEAKEAGARHKLIATDGVFSMDGDIAPLPEICD 198 (397)
T ss_pred CEEEEEhhhhHHHHHHHHhc---CCceEEeCC-----CCHHHHHHHHHhhhccCCCCeEEEEecCcCCCCCcCCHHHHHH
Confidence 99999999999988777665 777777653 478888887753 7889999999999999999999999
Q ss_pred HHHhcCCEEEEecccccccccc------cCCC--CCccEEEecccccc-CCCCcEEEEEecCCCCcccceecCCCccccc
Q psy15216 161 LCRSKGVIFHCDAAQAVGKIDI------NIQN--YKVDLMSFSAHKIY-GPKGIGALYIRRNPRTRIEAQIHGGGHEYGL 231 (2602)
Q Consensus 161 la~~~g~~livD~a~a~g~~~~------dl~~--~~~D~~~~S~~K~~-Gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~ 231 (2602)
+|++||+++|+|++|+.+.... .... .++|++++|+||++ |++ +||+++++++++.+.+.... ..
T Consensus 199 la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~g~r-~G~v~~~~~~~~~l~~~~~~-----~~ 272 (397)
T PRK06939 199 LADKYDALVMVDDSHAVGFVGENGRGTVEHFGVMDRVDIITGTLGKALGGAS-GGYTAGRKEVIDWLRQRSRP-----YL 272 (397)
T ss_pred HHHHhCCEEEEECcccccCcCCCCCCHHHHcCCCCCCcEEEEECHHHhCccC-ceEEEeCHHHHHHHHHhCcc-----cc
Confidence 9999999999999997553221 1111 24689999999966 665 59999998877666532110 01
Q ss_pred cccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc-cChhHHHHHh
Q psy15216 232 RSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGESLLMAI 310 (2602)
Q Consensus 232 ~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~L 310 (2602)
..++++....+++.+++++... .++.++++.++++++.+.|.+ .++.+..+.. .++.+.++. .+..++...|
T Consensus 273 ~~~~~~~~~~~a~~~al~~~~~-~~~~~~~~~~~~~~l~~~L~~--~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~L 345 (397)
T PRK06939 273 FSNSLAPAIVAASIKVLELLEE-SDELRDRLWENARYFREGMTA--AGFTLGPGEH----PIIPVMLGDAKLAQEFADRL 345 (397)
T ss_pred ccCCCCHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHH--cCCCcCCCCC----CEEEEEECCHHHHHHHHHHH
Confidence 1234444445556667775542 357788889999999999977 2554432211 122223332 2455677666
Q ss_pred --CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 311 --KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 311 --~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
+||.+.++. +... ....++||++++.+++++|+++++++|++.
T Consensus 346 ~~~gI~v~~~~-~~~~---------------~~~~~~iRi~~~~~~~~~~i~~~l~~L~~~ 390 (397)
T PRK06939 346 LEEGVYVIGFS-FPVV---------------PKGQARIRTQMSAAHTKEQLDRAIDAFEKV 390 (397)
T ss_pred HHCCceEeeeC-CCCC---------------CCCCceEEEEECCCCCHHHHHHHHHHHHHH
Confidence 789887433 2110 011268999999989999999999999863
|
|
| >PLN02607 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.5e-19 Score=230.72 Aligned_cols=290 Identities=16% Similarity=0.190 Sum_probs=201.1
Q ss_pred HHHHHHHHHHHHhC--------CCCCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEE
Q psy15216 42 AIEKARNEVAQLIY--------ADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRV 113 (2602)
Q Consensus 42 ~~~~~r~~lA~~~g--------~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v 113 (2602)
...++|+++|++++ +++++|++|+|+++|+.+++.++. +|||.|+++.|.|+.+...+.. +.|+++
T Consensus 96 G~~~LR~aiA~~l~~~~~~~~~v~p~~Ivit~G~t~al~~l~~~l~----~pGD~Vlv~~P~Y~~f~~~~~~--~~g~~v 169 (447)
T PLN02607 96 GLKSFRQAMASFMEQIRGGKARFDPDRIVLTAGATAANELLTFILA----DPGDALLVPTPYYPGFDRDLRW--RTGVKI 169 (447)
T ss_pred chHHHHHHHHHHHHHhcCCCCCcCHHHeEEcCChHHHHHHHHHHhC----CCCCEEEEcCCCCcchHHHHHh--cCCcEE
Confidence 35667777777663 577899999999999999999988 8999999999999998765542 348899
Q ss_pred EEeccCC--CCccChHHHHhhccC------CceEEEEecccCccccccc---HHHHHHHHHhcCCEEEEecccccccc--
Q psy15216 114 TYLKPKN--NGLITLSQLEEKICS------DTILVSVMLVNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQAVGKI-- 180 (2602)
Q Consensus 114 ~~v~~~~--~~~ld~e~l~~~i~~------~tklv~i~~~~npTG~~~~---l~~I~~la~~~g~~livD~a~a~g~~-- 180 (2602)
+.++.+. ++.+|++.++++++. ++|+++++|||||||.++| +++|.++|++|++++|+|++|+....
T Consensus 170 v~v~~~~~~~f~~~~~~le~a~~~a~~~~~~vk~lll~nP~NPtG~~~s~e~l~~l~~~~~~~~i~lI~DEiYa~~~f~~ 249 (447)
T PLN02607 170 VPIHCDSSNNFQVTPQALEAAYQEAEAANIRVRGVLITNPSNPLGATVQRSVLEDILDFVVRKNIHLVSDEIYSGSVFSA 249 (447)
T ss_pred EEEeCCCCCCCcCCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCCEEEEeccccccccCC
Confidence 9988764 356899999998863 7899999999999999999 66788889999999999999874211
Q ss_pred -cc-cC-------C--C-CCccEEEeccccccCCCC--cEEEEEe-cCCCCcccceecCCCccccccccCcchhHHHHHH
Q psy15216 181 -DI-NI-------Q--N-YKVDLMSFSAHKIYGPKG--IGALYIR-RNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMG 245 (2602)
Q Consensus 181 -~~-dl-------~--~-~~~D~~~~S~~K~~Gp~G--~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~ 245 (2602)
++ .+ . . ...-+++.|++|.||.+| +||++.. +.+...+.... ..+.++.....++.
T Consensus 250 ~~f~S~~s~~~~~~~~~~~~~v~vi~s~SK~fg~~GlRvG~ivs~n~~l~~~~~~~~---------~~~~~s~~~q~~~~ 320 (447)
T PLN02607 250 SEFVSVAEIVEARGYKGVAERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMS---------SFTLVSSQTQHLLA 320 (447)
T ss_pred CCcccHHHHHhhcCCCCCcCcEEEEEcchhcCCCCcceEEEEEEcCHHHHHHHHHHh---------hcCCCCHHHHHHHH
Confidence 11 11 0 1 112366789999988888 8999984 33433332211 11123444444454
Q ss_pred HHHH---HHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEccc------Ch-hHHHHHh---CC
Q psy15216 246 EAFR---LARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI------EG-ESLLMAI---KD 312 (2602)
Q Consensus 246 ~al~---~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~------~~-~~~~~~L---~g 312 (2602)
..|+ +....+...++++.+.++.+.+.|.+ .++....+.. ..++++.++.. +. .++...+ .|
T Consensus 321 ~~L~d~~~~~~~l~~~r~~l~~~~~~~~~~L~~--~gi~~~~~~a---g~fvw~~L~~~~~~~~~~~e~~l~~~ll~~~g 395 (447)
T PLN02607 321 SMLSDEEFTENYIRTNRERLRKRYEMIVQGLRR--AGIECLKGNA---GLFCWMNLSPLLETPTREGELALWDSILREVK 395 (447)
T ss_pred HHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCcccCCe---eEEEEEEchHhhcCCCchhHHHHHHHHHHhCC
Confidence 5554 23345667777888888888888877 3554432211 12223333221 11 2344344 59
Q ss_pred eEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 313 IAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 313 I~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
|.+.+|..|... .++|+||+++. .++++++..+++|.+.
T Consensus 396 V~v~pG~~f~~~-----------------~~g~fRi~fa~-~~~~~l~~gl~Ri~~~ 434 (447)
T PLN02607 396 LNISPGSSCHCS-----------------EPGWFRVCFAN-MSEDTLEVALKRIHRF 434 (447)
T ss_pred EEEcCccccCCC-----------------CCCEEEEEecc-CCHHHHHHHHHHHHHH
Confidence 999999877432 13899999984 3588899999998863
|
|
| >PRK03967 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-18 Score=222.10 Aligned_cols=300 Identities=20% Similarity=0.152 Sum_probs=209.3
Q ss_pred eeeccCCC--CCCCHHHHHHHHHHHhh--ccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHH
Q psy15216 1395 NIVFKDAT--TPIDPRVVDKMIPYLRV--QFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLA 1470 (2602)
Q Consensus 1395 ~v~L~~~~--~~~~~~v~eal~~~l~~--~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~a 1470 (2602)
.++|+.+. .+.++.+++++.+.+.. ...+|.. ...++|+++++++++++++|++|+|++++++.+
T Consensus 20 ~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~-----------g~~~lr~~ia~~~~~~~~~I~~t~G~~~~l~~~ 88 (337)
T PRK03967 20 RIWLDKNENPFDLPEELKEEIFEELKRVPFNRYPHI-----------TSDPLREAIAEFYGLDAENIAVGNGSDELISYL 88 (337)
T ss_pred eEEecCCCCCCCCCHHHHHHHHHHhhcCccccCCCC-----------CHHHHHHHHHHHhCcCcceEEEcCCHHHHHHHH
Confidence 35565333 35678899999887753 2223322 257799999999999999999999999999887
Q ss_pred HHhhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccCCceEEEEeccccccccccC
Q psy15216 1471 IKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP 1550 (2602)
Q Consensus 1471 l~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~ 1550 (2602)
+..+ +||+|+++.|.|+.+...... .|++++.++.+.++.+|++.+++++ ++++++++++|+||||.++|
T Consensus 89 ~~~~------~gd~V~v~~P~y~~~~~~~~~---~g~~~~~v~~~~~~~~d~~~l~~~~-~~~~~v~~~~P~NPtG~~~~ 158 (337)
T PRK03967 89 VKLF------EGKHIVITPPTFGMYSFYAKL---NGIPVIDVPLKEDFTIDGERIAEKA-KNASAVFICSPNNPTGNLQP 158 (337)
T ss_pred HHHh------CCCeEEEeCCChHHHHHHHHH---cCCeEEEeecCCCCCcCHHHHHHhc-cCCCEEEEeCCCCCCCCCCC
Confidence 6543 699999999999876654444 4999999998877789999998875 67899999999999999999
Q ss_pred hHHHHHHhhhcCCEEEEecccccCc--cccc-CCCCCccEEEEccccccCCCc--eEEEEEecCCCCccccccccCCccc
Q psy15216 1551 ILEIGELCRSKGVIFHCDAAQAVGK--IDIN-IQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEY 1625 (2602)
Q Consensus 1551 l~~I~~ia~~~gi~vivD~a~~~g~--~~~~-l~~~~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~ 1625 (2602)
.++|.++++ +++++|+|+++..-. .... ......-+++.|++|.+|++| +||+++++++++.+....
T Consensus 159 ~~~l~~i~~-~~~~ii~De~y~~~~~~~~~~~~~~~~~vi~l~S~SK~~~l~GlRiG~iv~~~~~i~~~~~~~------- 230 (337)
T PRK03967 159 EEEILKVLE-TGKPVVLDEAYAEFSGKSLIGLIDEYPNLILLRTFSKAFGLAGIRAGYAIANEEIIDALYRIK------- 230 (337)
T ss_pred HHHHHHHHh-cCCEEEEECchhhhcccchHHHHhhCCCEEEEecchHhhcchhhhheeeecCHHHHHHHHhhc-------
Confidence 999999995 799999999986211 1111 111122477789999888788 899999887766665432
Q ss_pred cCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecCCcHHHHHh
Q psy15216 1626 GLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMA 1705 (2602)
Q Consensus 1626 ~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1705 (2602)
...+.+.....++..+|... +...+...+..+.++.+.+.|.+ . .. + . ...++++. .+ +...
T Consensus 231 --~~~~~~~~~q~~~~~~l~~~-~~~~~~~~~~~~~r~~l~~~L~~-~----~~-~-~----~~~~~~~~-~~---~~~~ 292 (337)
T PRK03967 231 --PPFSLNILTMKIVRLALDHY-DLIEERIDYIIKERERVRRELGE-Y----AY-P-S----DANFLLLK-LD---AYDY 292 (337)
T ss_pred --CCCCCCHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHhcc-C----cC-C-C----CCcEEEEh-HH---HHHH
Confidence 11234555666665666522 23344445556667777777755 1 11 1 1 12223332 12 3333
Q ss_pred c--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1706 I--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1706 L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
| +||.++++... ..+++||+++ +.++.++++++|++
T Consensus 293 l~~~gi~v~~~~~~--------------------~~~~~Ri~~~---~~~~~~~l~~~l~~ 330 (337)
T PRK03967 293 LLENGIVVRKLSGR--------------------LEGHIRVTVG---KREENDEFIKALKE 330 (337)
T ss_pred HHHCCEEEEeCCCC--------------------CCCeEEEecC---CHHHHHHHHHHHHH
Confidence 3 79999854311 1278999998 77889999999986
|
|
| >TIGR03539 DapC_actino succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.5e-19 Score=225.56 Aligned_cols=299 Identities=14% Similarity=0.111 Sum_probs=202.0
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHh-------CCCCCcEEEeCCHHHHHHHHHHhccc
Q psy15216 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI-------YADPREIIWTSGATESNNLAIKGAAH 80 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~-------g~~~~~Iv~t~g~T~al~~~~~~l~~ 80 (2602)
++++.+.+++.+... ...++.. . ...++|+++++++ |+++++|++|+|+++++..++..+.
T Consensus 34 ~~~~~~~~~~~~~~~-~~~Y~~~------~----G~~~lr~~ia~~~~~~~~~~~~~~~~I~it~G~~~~i~~~~~~l~- 101 (357)
T TIGR03539 34 PVPPLIRAALAAAAD-APGYPQT------W----GTPELREAIVDWLERRRGVPGLDPTAVLPVIGTKELVAWLPTLLG- 101 (357)
T ss_pred CCCHHHHHHHHHHHh-hCCCCcc------c----CCHHHHHHHHHHHHHhcCCCCCCcCeEEEccChHHHHHHHHHHHc-
Confidence 556778888776543 2233322 1 1234455555554 4678899999999999999988773
Q ss_pred ccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccCCceEEEEecccCccccccc---HHH
Q psy15216 81 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILE 157 (2602)
Q Consensus 81 ~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~---l~~ 157 (2602)
.++||.|++++|.|+++...+... |++++.++ +++.+. .++++++++++|+||||.++| +++
T Consensus 102 --~~~gd~Vl~~~p~y~~~~~~~~~~---g~~~~~v~-------~~~~l~---~~~~~~v~~~~p~NPtG~~~~~~~~~~ 166 (357)
T TIGR03539 102 --LGPGDTVVIPELAYPTYEVGALLA---GATPVAAD-------DPTELD---PVGPDLIWLNSPGNPTGRVLSVDELRA 166 (357)
T ss_pred --CCCCCEEEECCCCcHHHHHHHHhc---CCEEeccC-------ChhhcC---ccCccEEEEeCCCCCcCccCCHHHHHH
Confidence 279999999999999987766554 88887774 233332 368999999999999999998 556
Q ss_pred HHHHHHhcCCEEEEeccccc-cc--cccc-CC------CCCccEEEeccccccCCCC--cEEEEEecCCCCcccceecCC
Q psy15216 158 IGELCRSKGVIFHCDAAQAV-GK--IDIN-IQ------NYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGG 225 (2602)
Q Consensus 158 I~~la~~~g~~livD~a~a~-g~--~~~d-l~------~~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g~ 225 (2602)
|.++|++||+++|+|++|+. .. .+.. +. .....+++.|++|.+|++| +||+++++++++.+.....
T Consensus 167 i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G~R~G~~i~~~~~~~~~~~~~~-- 244 (357)
T TIGR03539 167 IVAWARERGAVVASDECYLELGWEGRPVSILDPRVCGGDHTGLLAVHSLSKRSNLAGYRAGFVAGDPALVAELLTVRK-- 244 (357)
T ss_pred HHHHHHHcCeEEEEecchhhhccCCCCccceecccCCCccccEEEEeccccccCCCceeEEEEecCHHHHHHHHHHHh--
Confidence 88889999999999999852 11 1111 10 1122478889999988888 7999988877766643321
Q ss_pred CccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc-cChh
Q psy15216 226 GHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGE 304 (2602)
Q Consensus 226 ~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~-~~~~ 304 (2602)
.....++.+...++.++|+. ..+..+.+.++.++++.+.+.|.+ .|+.+..+.. ..++++.. .+..
T Consensus 245 -----~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~L~~--~g~~~~~p~~-----~~~~~~~~~~~~~ 311 (357)
T TIGR03539 245 -----HAGLMVPAPVQAAMVAALGD-DGHVAEQKARYAARRAQLKPALEK--AGFRIDHSEA-----GLYLWATRGEDAW 311 (357)
T ss_pred -----hcccCCCHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHHHHH--cCCCCcCCCc-----cEEEEEECCCCHH
Confidence 11234555555556566642 234566777888888889888877 3555443321 22333332 2445
Q ss_pred HHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHH
Q psy15216 305 SLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK 367 (2602)
Q Consensus 305 ~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~ 367 (2602)
++...| +||.+.+|..+... .++++||+++. +.++++.+++.|+
T Consensus 312 ~~~~~l~~~gV~v~pg~~f~~~-----------------~~~~iRis~~~--~~~~i~~~~~~l~ 357 (357)
T TIGR03539 312 DTVDRLAELGILVAPGDFYGPA-----------------GSQHVRVALTA--TDERIAAAVARLT 357 (357)
T ss_pred HHHHHHHhCCEEECCccccCCC-----------------CCCeEEEEecC--CHHHHHHHHHhhC
Confidence 566666 79999988755321 13799999985 6789999888763
|
This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.2e-18 Score=233.58 Aligned_cols=312 Identities=12% Similarity=0.073 Sum_probs=220.4
Q ss_pred CCCCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCC---cEEEeCCHHHHHHHHHHhhhh
Q psy15216 1400 DATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPR---EIIWTSGATESNNLAIKGAAH 1476 (2602)
Q Consensus 1400 ~~~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~---~iv~t~gaT~al~~al~~l~~ 1476 (2602)
....++|+.+++++.+.+..... .. + .....+.+++++++.+|.+.+ +|++++|+++++..++.++.
T Consensus 706 E~d~ppPp~V~eAi~eal~~~~~--s~-----g--~pdlr~aLa~~la~~~Gv~~d~~e~IIvt~Gs~elL~lll~aLl- 775 (1082)
T PLN02672 706 ESFLPVPSAVKASIFESFVRQNI--SE-----S--ETDPRPSILQFIKSNYGFPTDSCTEFVYGDTSLALFNKLVLCCV- 775 (1082)
T ss_pred CCCCCCCHHHHHHHHHHHhhcCC--CC-----C--ChHHHHHHHHHHHHHhCcCCCCCCEEEEeCCHHHHHHHHHHHHc-
Confidence 44567889999999887754211 11 0 123467888999998888543 79999999999999999987
Q ss_pred hhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCC--CCCcChhHHHhhccC-CceEEEEeccc-cccccccC--
Q psy15216 1477 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICS-DTILVSVMLVN-NEIGVIQP-- 1550 (2602)
Q Consensus 1477 ~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~id~d~l~~~i~~-~t~lv~l~~~~-n~tG~~~~-- 1550 (2602)
++||+|+++.|.|+.+...++.+ |++++.++.++ ++.+|++++++++++ ++++|++++|+ ||||.+++
T Consensus 776 ---~pGD~VLVp~PtY~~Y~~~a~~~---Ga~vv~Vpl~~e~gf~lD~d~Le~al~~~~~~~I~L~nPnhNPTG~v~S~e 849 (1082)
T PLN02672 776 ---QEGGTLCFPAGSNGTYVSAAKFL---KANFRRIPTKSSDGFKLTAKTLASTLETVKKPWVYISGPTINPTGLLYSNS 849 (1082)
T ss_pred ---CCCCEEEEeCCChHHHHHHHHHc---CCEEEEEecccccCCCCCHHHHHHHhccCCCCEEEEECcCCCCcCccCCHH
Confidence 89999999999999998887766 99999999864 567899999999976 45689999997 99999999
Q ss_pred -hHHHHHHhhhcCCEEEEeccccc----Ccc--cccCC----CC------CccEEEEccccccCCCc--eEEEEEecC-C
Q psy15216 1551 -ILEIGELCRSKGVIFHCDAAQAV----GKI--DINIQ----NY------KVDLMSFSAHKIYGPKG--IGALYIRRN-P 1610 (2602)
Q Consensus 1551 -l~~I~~ia~~~gi~vivD~a~~~----g~~--~~~l~----~~------~~D~~v~S~~K~~gp~G--~G~l~~~~~-~ 1610 (2602)
+++|+++|++||++||+|++|+. +.. +.++. .. ..-+++.|++|.++++| +||++++++ +
T Consensus 850 eLe~Llela~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~~~~~~sks~nVIvL~SfSKkf~lpGLRIGylIap~~eL 929 (1082)
T PLN02672 850 EIEEILSVCAKYGARVIIDTSFSGLEYDTSGWGGWDLKSILSRLKSSNPSFAVALLGGLSTELLSGGHEFGFLALNDSVL 929 (1082)
T ss_pred HHHHHHHHHHHcCCEEEEeCCCCccccCCCCCcccchhhHHHHhccccCCceEEEEeCcHHhhccHHHHheeEEeCCHHH
Confidence 67788889999999999999862 110 00111 11 12356779999888888 899999754 5
Q ss_pred CCccccccccCCccccCCCCCcchhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCC
Q psy15216 1611 RTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLA-------RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMN 1683 (2602)
Q Consensus 1611 ~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~-------~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~ 1683 (2602)
++.+.... . ...+......++.+++... ...+.+.++.+++.++++.+.|.+ .++.+..+..
T Consensus 930 i~~l~~~~-------~--~s~~~~~~q~Aaaaalall~~~~~~~~~~l~e~r~~Lk~rRd~L~e~L~~--~Gi~v~~PeG 998 (1082)
T PLN02672 930 IDAFHSAP-------G--LSRPHSTLKYTIKKLLGLKNQKSSDLLDGVAEQKKILKSRAERLKETLEA--CGWDVLEPQG 998 (1082)
T ss_pred HHHHHHhh-------h--hcCCCcHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCeEecCCc
Confidence 55554321 0 1112222333333433311 234567777789999999999987 3666553322
Q ss_pred CCCCceEEEEEe--------------------cCCcHHHHHhc---CCEEEccccccCCCCCChhHHHHHcCCCccccCC
Q psy15216 1684 NRIPHNLNISFN--------------------FIEGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHS 1740 (2602)
Q Consensus 1684 ~~~~~~~~~~~~--------------------~~~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 1740 (2602)
+ .+++.. ..+..++...| .||.+.+|..|+.+ +
T Consensus 999 G-----FfLwl~l~~~l~~~~~~~~~~~~~~~~lds~efae~LLee~GVaV~PGs~FG~~-------------------g 1054 (1082)
T PLN02672 999 G-----ISMVAKPSAYLGKTVKLKSIDGDTGIKLDSSNIREAILKSTGLCINSSSWTGIP-------------------G 1054 (1082)
T ss_pred E-----EEEEEEccccccccccccccccccccCCCHHHHHHHHHHcCCEEEecCcccCCC-------------------C
Confidence 1 122221 11345566655 48999999765432 7
Q ss_pred eEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1741 SIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1741 ~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
++||+++. +.+++++++++|++
T Consensus 1055 ~~RIsfa~--~~e~LeeALerL~k 1076 (1082)
T PLN02672 1055 YCRFSFAL--EDSEFDRALKAIAR 1076 (1082)
T ss_pred eEEEEecC--CHHHHHHHHHHHHH
Confidence 99999984 77899999999986
|
|
| >PRK08175 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.1e-18 Score=225.13 Aligned_cols=288 Identities=15% Similarity=0.107 Sum_probs=202.4
Q ss_pred HHHHHHHHHHHh----CC--CCC-cEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEE
Q psy15216 43 IEKARNEVAQLI----YA--DPR-EIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTY 115 (2602)
Q Consensus 43 ~~~~r~~lA~~~----g~--~~~-~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~ 115 (2602)
..++|+++++++ |. +++ ++++|+|+++++++++.++. +|||+|++++|.|+.+...+... |++++.
T Consensus 69 ~~~lr~aia~~~~~~~g~~~~~~~~i~~t~G~~~~l~~~~~~~~----~~gd~Vlv~~P~y~~~~~~~~~~---g~~~~~ 141 (395)
T PRK08175 69 IPRLRRAISRWYQDRYDVDIDPESEAIVTIGSKEGLAHLMLATL----DHGDTVLVPNPSYPIHIYGAVIA---GAQVRS 141 (395)
T ss_pred CHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHHHHHHHHhC----CCCCEEEEcCCCCcchHHHHHHc---CCeEEE
Confidence 345566666654 44 566 79999999999999998887 89999999999999987777665 999999
Q ss_pred eccCCCCccChHHHHhhcc---CCceEEEEecccCcccccccH---HHHHHHHHhcCCEEEEeccccccc----ccccC-
Q psy15216 116 LKPKNNGLITLSQLEEKIC---SDTILVSVMLVNNEIGVIQPI---LEIGELCRSKGVIFHCDAAQAVGK----IDINI- 184 (2602)
Q Consensus 116 v~~~~~~~ld~e~l~~~i~---~~tklv~i~~~~npTG~~~~l---~~I~~la~~~g~~livD~a~a~g~----~~~dl- 184 (2602)
++.++++ .+.++++++++ ++++++++++|+||||.+++. ++|+++|++||+++|+|++++... .+..+
T Consensus 142 v~~~~~~-~~~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~ 220 (395)
T PRK08175 142 VPLVEGV-DFFNELERAIRESYPKPKMMILGFPSNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIM 220 (395)
T ss_pred EecccCC-CcHHHHHHHHhhccCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchHhhccCCCCCcchh
Confidence 9887543 24788888775 478999999999999999997 678889999999999999985321 11111
Q ss_pred --CC-CCccEEEeccccccCCCC--cEEEEEecCCCCcccceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHH
Q psy15216 185 --QN-YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEEL 259 (2602)
Q Consensus 185 --~~-~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~ 259 (2602)
.. .+..+++.|++|.+|.+| +||++.++++++.+..... ....+.+.+...++..++.....++++.+
T Consensus 221 ~~~~~~~~~i~~~S~SK~~g~pGlRiG~~~~~~~l~~~~~~~~~-------~~~~~~~~~~q~~~~~~l~~~~~~~~~~~ 293 (395)
T PRK08175 221 QVPGAKDVAVEFFTLSKSYNMAGWRIGFMVGNPELVSALARIKS-------YHDYGTFTPLQVAAIAALEGDQQCVRDIA 293 (395)
T ss_pred cCCCcccCEEEEeeccccccCcchhheeeeCCHHHHHHHHHHHh-------hcccCCCcHHHHHHHHHHhCcHHHHHHHH
Confidence 11 123467889999998888 8999998887776653221 11223333344444455553334567778
Q ss_pred HHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEccc----ChhHHHHHh---CCeEEcccccCCCCCCChHHHH
Q psy15216 260 KRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI----EGESLLMAI---KDIAVSSGSACTSASLEPSYVL 332 (2602)
Q Consensus 260 ~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~ 332 (2602)
.++++.++++.+.|.. . ++.+..+.. ....++.++.. +..++...+ .||.+.+|..|...
T Consensus 294 ~~~~~~~~~~~~~L~~-~-~~~~~~p~~---g~~i~i~l~~~~~~~~~~~~~~~l~~~~gv~v~p~~~f~~~-------- 360 (395)
T PRK08175 294 EQYKRRRDVLVKGLHE-A-GWMVEMPKA---SMYVWAKIPEPYAAMGSLEFAKKLLNEAKVCVSPGIGFGDY-------- 360 (395)
T ss_pred HHHHHHHHHHHHHHHH-c-CCcccCCCE---EEEEEEECCcccCCCCHHHHHHHHHHhCCEEEeCchhhCcC--------
Confidence 8888888999999987 3 555432221 12233333321 245666554 69999988766321
Q ss_pred HHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 333 RALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 333 ~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
..+++||+++ .+++.+..+++.|++.
T Consensus 361 ---------~~~~lRis~~--~~~~~~~~al~~l~~~ 386 (395)
T PRK08175 361 ---------GDTHVRFALI--ENRDRIRQAIRGIKAM 386 (395)
T ss_pred ---------CCCeEEEEeC--CCHHHHHHHHHHHHHH
Confidence 1368999996 4678888888888753
|
|
| >PRK06959 putative threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.2e-19 Score=223.44 Aligned_cols=263 Identities=15% Similarity=0.070 Sum_probs=190.4
Q ss_pred HHHHHHHHHHhCCC-CCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCC
Q psy15216 44 EKARNEVAQLIYAD-PREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNG 122 (2602)
Q Consensus 44 ~~~r~~lA~~~g~~-~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~ 122 (2602)
.++|+++|+++|.+ +++|++|+|+++++.++.. +. ++|+ |+++.|.|+.+...++.. |++++.++.++
T Consensus 56 ~~L~~~ia~~~~~~~~~~I~i~~Gs~e~i~~l~~-~~----~~g~-v~v~~P~y~~y~~~~~~~---g~~~~~v~~~~-- 124 (339)
T PRK06959 56 DGLAACAARYYGAPDAAHVLPVAGSQAAIRALPA-LL----PRGR-VGIAPLAYSEYAPAFARH---GHRVVPLDEAA-- 124 (339)
T ss_pred HHHHHHHHHHhCCCCcccEEECcCHHHHHHHHHH-hc----CCCe-EEEcCCCcHHHHHHHHHC---CCEEEeecccc--
Confidence 68899999999996 5899999999999987754 34 5776 888999999888777665 99999887643
Q ss_pred ccChHHHHhhccCCceEEEEecccCcccccccHHHHHHH---HHhcCCEEEEeccccccccccc---CCCCCccEEEecc
Q psy15216 123 LITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGEL---CRSKGVIFHCDAAQAVGKIDIN---IQNYKVDLMSFSA 196 (2602)
Q Consensus 123 ~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~l---a~~~g~~livD~a~a~g~~~~d---l~~~~~D~~~~S~ 196 (2602)
+ .+...++++++++||||||.+++.+++.++ |++++.++|+|+++........ +.....-+++.||
T Consensus 125 ----~----~~~~~~~~v~l~nPnNPTG~~~s~~~l~~l~~~~~~~~~~vI~DEay~~~~~~~s~~~~~~~~~vi~l~Sf 196 (339)
T PRK06959 125 ----D----TLPAALTHLIVVNPNNPTAERLPAARLLRWHAQLAARGGTLIVDEAFADTLPAASLAAHTDRPGLVVLRSV 196 (339)
T ss_pred ----h----hccccCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEECCCccCCCcccchhccCCCCEEEEecC
Confidence 2 223456799999999999999998777665 4578999999999864321111 1112224778899
Q ss_pred ccccCCCC--cEEEEEecCCCCcccceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Q psy15216 197 HKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLM 274 (2602)
Q Consensus 197 ~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~ 274 (2602)
+|.||++| +||+++++++++.+..... .++.+.+...++.++|+. ..+.++.++++.+.++++.+.|.
T Consensus 197 SK~~gl~GlRiGy~v~~~~li~~l~~~~~---------~~~vs~~~q~a~~~~L~~-~~~~~~~~~~~~~~r~~l~~~L~ 266 (339)
T PRK06959 197 GKFFGLAGVRAGFVLAAPALLAALRDALG---------AWTVSGPARHAVRAAFAD-AAWQAAMRERLAADGARLAALLR 266 (339)
T ss_pred hhhcCCcchheEEEecCHHHHHHHHHhcC---------CCCCcHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888 8999999888877765431 223455555566666652 34466778888999999999998
Q ss_pred hccCceEEeCCCCCCCCceEEEEEcccChhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCC
Q psy15216 275 ESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGR 352 (2602)
Q Consensus 275 ~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~ 352 (2602)
+ + |+.+.. .+ .++++...+..++...| +||.++ .|.. .+++||+++
T Consensus 267 ~-~-g~~~~~-----~~--~f~~~~~~~~~~l~~~l~~~GI~vr---~~~~-------------------~~~lRisi~- 314 (339)
T PRK06959 267 A-H-GFAVHA-----TP--LFSWTDDPRAAALHAALARRGIWTR---YFAP-------------------PPSVRFGLP- 314 (339)
T ss_pred H-C-CCCccC-----cc--eEEEEeCCCHHHHHHHHHhCCeEEE---ECCC-------------------CCeEEEECC-
Confidence 7 3 554431 12 23334333556677666 799997 2322 168999984
Q ss_pred CCCHHHHHHHHHHHHh
Q psy15216 353 FTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 353 ~~t~edid~li~~L~~ 368 (2602)
.+.+|+++++++|++
T Consensus 315 -~~~~e~~~l~~al~~ 329 (339)
T PRK06959 315 -ADEAEWQRLEDALAE 329 (339)
T ss_pred -CCHHHHHHHHHHHHH
Confidence 278999999999986
|
|
| >PRK08354 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.3e-18 Score=215.45 Aligned_cols=280 Identities=14% Similarity=0.050 Sum_probs=183.8
Q ss_pred CHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCEE
Q psy15216 1406 DPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHI 1485 (2602)
Q Consensus 1406 ~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~V 1485 (2602)
|+.+.+++.+.++....+|. ...+|+++++++| ++|++|+|+++++.+++..+ .+||+|
T Consensus 22 p~~~~~a~~~~~~~~~~yp~-------------~~~l~~~ia~~~~---~~I~vt~G~~~al~~~~~~~-----~~gd~v 80 (311)
T PRK08354 22 PEWLDEMFERAKEISGRYTY-------------YEWLEEEFSKLFG---EPIVITAGITEALYLIGILA-----LRDRKV 80 (311)
T ss_pred CHHHHHHHHHHHHHhhcCCC-------------hHHHHHHHHHHHC---CCEEECCCHHHHHHHHHHhh-----CCCCeE
Confidence 56788888877654322332 2457899999998 37999999999999887433 489999
Q ss_pred EEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccCCceEEEEeccccccccccC---hHHHHHHhhhcC
Q psy15216 1486 ITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIGELCRSKG 1562 (2602)
Q Consensus 1486 lv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~---l~~I~~ia~~~g 1562 (2602)
++++|+|+.+....+.+ |++++.++ +|++.++++++ +++++++++|+||||.+++ +++|+++|++||
T Consensus 81 lv~~P~y~~~~~~~~~~---g~~~~~~~------~d~~~l~~~~~-~~~~vi~~~P~NPTG~~~~~~~l~~l~~~a~~~~ 150 (311)
T PRK08354 81 IIPRHTYGEYERVARFF---AARIIKGP------NDPEKLEELVE-RNSVVFFCNPNNPDGKFYNFKELKPLLDAVEDRN 150 (311)
T ss_pred EEeCCCcHHHHHHHHHc---CCEEeecC------CCHHHHHHhhc-CCCEEEEecCCCCCCCccCHHHHHHHHHHhhhcC
Confidence 99999999998877666 88887653 57889988876 5789999999999999999 566777888999
Q ss_pred CEEEEecccccCcccccCCCCCccEEEEccccccCCCc--eEEEEEecCCCCccccccccCCccccCCCCCcchhHHHHH
Q psy15216 1563 VIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGM 1640 (2602)
Q Consensus 1563 i~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al 1640 (2602)
+++|+|+++..-...-........+++.|++|.+|++| +||+++ ..+.+.... ...+.+..+..++
T Consensus 151 ~~li~De~y~~f~~~~~~~~~~~vi~~~S~SK~~~l~GlRiG~~v~---~~~~l~~~~---------~~~~~~~~~~~~~ 218 (311)
T PRK08354 151 ALLILDEAFIDFVKKPESPEGENIIKLRTFTKSYGLPGIRVGYVKG---FEEAFRSVR---------MPWSIGSTGYAFL 218 (311)
T ss_pred cEEEEeCcchhccccccccCCCcEEEEeccHhhcCCccceeeeeee---hHHHHHHcC---------CCccCCHHHHHHH
Confidence 99999999853221100111233577889999999888 899998 233333221 1122333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecCCcHHHHHhc--CCEEEccccccC
Q psy15216 1641 GEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDIAVSSGSACT 1718 (2602)
Q Consensus 1641 ~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~v~~g~~~~ 1718 (2602)
...+.-....+.+.++.....++.+.+.+ .. + +...++.+...+..++...| +||.+++|..|.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l--------~~-~-----~~~~~~~~~~~~~~~~~~~l~~~gv~v~~g~~f~ 284 (311)
T PRK08354 219 EFLIEDDFEHLRKTMPLIWREKERFEKAL--------YV-K-----SDANFFIKDVGDAEKFVEFLKRNGILVRDCTSFG 284 (311)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHhc--------CC-C-----CCCcEEEEECCCHHHHHHHHHHCCeEEEecccCC
Confidence 23222100112222222222222222111 11 1 11222333333455666655 899999998764
Q ss_pred CCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1719 SASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1719 ~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
.+ +++||+++ +.++.++++++|++
T Consensus 285 ~~-------------------~~iRi~~~---~~~~~~~l~~al~~ 308 (311)
T PRK08354 285 LP-------------------GYIRFSVR---DREENEKLIRALRE 308 (311)
T ss_pred CC-------------------CeEEEEeC---CHHHHHHHHHHHHH
Confidence 32 79999998 67889999999986
|
|
| >cd00609 AAT_like Aspartate aminotransferase family | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.5e-19 Score=227.81 Aligned_cols=289 Identities=20% Similarity=0.213 Sum_probs=213.8
Q ss_pred HHHHHHHHHHHhCCC------CCcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEe
Q psy15216 1439 IEKARNEVAQLIYAD------PREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYL 1512 (2602)
Q Consensus 1439 ~~~lr~~ia~~~g~~------~~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v 1512 (2602)
..++++.++++++.. ++++++++|+|+++..++.++. ++||+|+++.+.|+++...++.. |.+++.+
T Consensus 38 ~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~~----~~g~~vl~~~~~~~~~~~~~~~~---~~~~~~i 110 (350)
T cd00609 38 LPELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLLRALL----NPGDEVLVPDPTYPGYEAAARLA---GAEVVPV 110 (350)
T ss_pred cHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHhC----CCCCEEEEcCCCchhHHHHHHHC---CCEEEEE
Confidence 556777777777653 6689999999999999999987 78999999999999988777665 8999999
Q ss_pred ccCCCCCcCh--hHHHhhccCCceEEEEeccccccccccChHHH---HHHhhhcCCEEEEecccccCccc-------ccC
Q psy15216 1513 KPKNNGLITL--SQLEEKICSDTILVSVMLVNNEIGVIQPILEI---GELCRSKGVIFHCDAAQAVGKID-------INI 1580 (2602)
Q Consensus 1513 ~~~~~~~id~--d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I---~~ia~~~gi~vivD~a~~~g~~~-------~~l 1580 (2602)
+.++++..+. +.++..+++++++|++++++||||.++|++++ .++|+++|+++|+|++|+.+... ...
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~tG~~~~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~~~ 190 (350)
T cd00609 111 PLDEEGGFLLDLELLEAAKTPKTKLLYLNNPNNPTGAVLSEEELEELAELAKKHGILIISDEAYAELVYDGEPPPALALL 190 (350)
T ss_pred ecccccCCccCHHHHHhhcCccceEEEEECCCCCCCcccCHHHHHHHHHHHHhCCeEEEEecchhhceeCCcccccccCc
Confidence 9887776655 77888888999999999999999999996655 48999999999999998764321 223
Q ss_pred CCCCccEEEEccccccCCC--ceEEEEEec-CCCCccccccccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHH
Q psy15216 1581 QNYKVDLMSFSAHKIYGPK--GIGALYIRR-NPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKR 1657 (2602)
Q Consensus 1581 ~~~~~D~~v~S~~K~~gp~--G~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~ 1657 (2602)
...+.|+++.|+||+++.. ++|++++++ ++.+.+.... .+..++++...+.++..++.....+++...++
T Consensus 191 ~~~~~~~~~~s~~K~~~~~g~~~G~i~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 263 (350)
T cd00609 191 DAYERVIVLRSFSKTFGLPGLRIGYLIAPPEELLERLKKLL-------PYTTSGPSTLSQAAAAAALDDGEEHLEELRER 263 (350)
T ss_pred CccCcEEEEeecccccCCcccceEEEecCHHHHHHHHHHHH-------HhcccCCChHHHHHHHHHHhCcHHHHHHHHHH
Confidence 4456789999999966533 389999988 5555554322 12245677788888888887544667888899
Q ss_pred HHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecC-CcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCC
Q psy15216 1658 ILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI-EGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCN 1734 (2602)
Q Consensus 1658 ~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~ 1734 (2602)
+.++++++.+.|.+ .+...+..+ .......+.++.. ....+...| +||.+.++..+...
T Consensus 264 ~~~~~~~l~~~L~~-~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~l~~~gi~i~~~~~~~~~-------------- 325 (350)
T cd00609 264 YRRRRDALLEALKE-LGPLVVVKP---SGGFFLWLDLPEGDDEEFLERLLLEAGVVVRPGSAFGEG-------------- 325 (350)
T ss_pred HHHHHHHHHHHHHh-cCCccccCC---CccEEEEEecCCCChHHHHHHHHHhCCEEEecccccccC--------------
Confidence 99999999999987 433332111 1122223333332 233344444 59999877655311
Q ss_pred ccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1735 DELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1735 ~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
...++|++++.. .+|+++++++|++
T Consensus 326 ---~~~~iRi~~~~~--~~~i~~~~~al~~ 350 (350)
T cd00609 326 ---GEGFVRLSFATP--EEELEEALERLAE 350 (350)
T ss_pred ---CCCeEEEEeeCC--HHHHHHHHHHhhC
Confidence 137899999976 8999999999873
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi |
| >PRK09472 ftsA cell division protein FtsA; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.8e-18 Score=224.03 Aligned_cols=197 Identities=15% Similarity=0.190 Sum_probs=149.0
Q ss_pred HHHHHHHHHHHHHcCCceEEEechhHHHHHHhhhccCcccceEEEEEeCCceEEEEEEEEECCEEEEEEEecCCCCcchH
Q psy15216 778 DIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDD 857 (2602)
Q Consensus 778 ~~qr~~~~~Aa~~AGl~~~~li~EPtAAAl~y~~~~~~~~~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~ 857 (2602)
+.++.. .+|++.||+++..++.||.|+|.++... ..++..++|+|+||||||+++++ ++.+. .......||++
T Consensus 166 ~~~~~~-~~a~~~aGl~v~~iv~ep~Aaa~a~l~~-~e~~~gv~vvDiGggtTdisv~~--~G~l~---~~~~i~~GG~~ 238 (420)
T PRK09472 166 DMAKNI-VKAVERCGLKVDQLIFAGLASSYAVLTE-DERELGVCVVDIGGGTMDIAVYT--GGALR---HTKVIPYAGNV 238 (420)
T ss_pred HHHHHH-HHHHHHcCCeEeeEEehhhHHHHHhcCh-hhhhcCeEEEEeCCCceEEEEEE--CCEEE---EEeeeechHHH
Confidence 445444 5699999999999999999999988544 33567899999999999999996 44332 22336799999
Q ss_pred HHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHcccc------cceEEEEEecCCceEEEEeCHHHHHHHHHHHHHH
Q psy15216 858 FDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQ------SSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNR 931 (2602)
Q Consensus 858 ~D~~l~~~l~~~~~~~~~~~~~~~~l~~~~e~~K~~LS~~------~~~~~~i~~~~~~~~~~~itr~~fe~l~~~~~~~ 931 (2602)
|++.|...+.- ....||++|+.+... .+..+.++..++. ...+++|.+|.+++.+.+++
T Consensus 239 it~dIa~~l~i--------------~~~~AE~lK~~~g~~~~~~~~~~~~i~v~~~~~~-~~~~i~~~~l~~ii~~r~~e 303 (420)
T PRK09472 239 VTSDIAYAFGT--------------PPSDAEAIKVRHGCALGSIVGKDESVEVPSVGGR-PPRSLQRQTLAEVIEPRYTE 303 (420)
T ss_pred HHHHHHHHhCc--------------CHHHHHHHHHhcceeccccCCCCceeEecCCCCC-CCeEEcHHHHHHHHHHHHHH
Confidence 99888755421 137899999775432 2344555533332 23588999999999996666
Q ss_pred HHHHHH-------HHHHHcCCCccccceEEEecCccchHHHHHHHHhhccCcccC------------cCCcchHhHHHHH
Q psy15216 932 TILLSS-------KALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLT------------SIDPDKAVVFGAA 992 (2602)
Q Consensus 932 ~~~~i~-------~~l~~a~~~~~~i~~V~LvGG~sr~P~v~~~l~~~f~~~~~~------------~~~p~~aVa~GAa 992 (2602)
+.+.++ ..++++++....++.|+|+||+|++|.+++.+++.|+.++.. ..+|..++|.|.+
T Consensus 304 i~~~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f~~~vri~~P~~~~g~~~~~~~P~~ata~Gl~ 383 (420)
T PRK09472 304 LLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFHTQVRIGAPLNITGLTDYAQEPYYSTAVGLL 383 (420)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHhCCCeEEeCCcccCCChhhcCCcHHHHHHHHH
Confidence 666665 455677777778999999999999999999999999755432 1489999999999
Q ss_pred HHhH
Q psy15216 993 IQAN 996 (2602)
Q Consensus 993 ~~a~ 996 (2602)
+++.
T Consensus 384 ~~~~ 387 (420)
T PRK09472 384 HYGK 387 (420)
T ss_pred HHhh
Confidence 9975
|
|
| >TIGR03539 DapC_actino succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.7e-18 Score=222.77 Aligned_cols=298 Identities=14% Similarity=0.091 Sum_probs=200.6
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHh-------CCCCCcEEEeCCHHHHHHHHHHhhhh
Q psy15216 1404 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI-------YADPREIIWTSGATESNNLAIKGAAH 1476 (2602)
Q Consensus 1404 ~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~-------g~~~~~iv~t~gaT~al~~al~~l~~ 1476 (2602)
+.++.+.+++.+... ...++.. ....++|+++++++ |+++++|++|+|+++++..++..+.
T Consensus 34 ~~~~~~~~~~~~~~~-~~~Y~~~----------~G~~~lr~~ia~~~~~~~~~~~~~~~~I~it~G~~~~i~~~~~~l~- 101 (357)
T TIGR03539 34 PVPPLIRAALAAAAD-APGYPQT----------WGTPELREAIVDWLERRRGVPGLDPTAVLPVIGTKELVAWLPTLLG- 101 (357)
T ss_pred CCCHHHHHHHHHHHh-hCCCCcc----------cCCHHHHHHHHHHHHHhcCCCCCCcCeEEEccChHHHHHHHHHHHc-
Confidence 456677777776543 2223322 11345566666665 4678999999999999999888762
Q ss_pred hhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccCCceEEEEeccccccccccC---hHH
Q psy15216 1477 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILE 1553 (2602)
Q Consensus 1477 ~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~---l~~ 1553 (2602)
.++||+|++++|+|+++....... |++++.++ +++.+. .+++++|++++|+||||.++| +++
T Consensus 102 --~~~gd~Vl~~~p~y~~~~~~~~~~---g~~~~~v~-------~~~~l~---~~~~~~v~~~~p~NPtG~~~~~~~~~~ 166 (357)
T TIGR03539 102 --LGPGDTVVIPELAYPTYEVGALLA---GATPVAAD-------DPTELD---PVGPDLIWLNSPGNPTGRVLSVDELRA 166 (357)
T ss_pred --CCCCCEEEECCCCcHHHHHHHHhc---CCEEeccC-------ChhhcC---ccCccEEEEeCCCCCcCccCCHHHHHH
Confidence 289999999999999987666544 88887763 222222 367899999999999999998 667
Q ss_pred HHHHhhhcCCEEEEeccccc-Cc--cccc-CC------CCCccEEEEccccccCCCc--eEEEEEecCCCCccccccccC
Q psy15216 1554 IGELCRSKGVIFHCDAAQAV-GK--IDIN-IQ------NYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGG 1621 (2602)
Q Consensus 1554 I~~ia~~~gi~vivD~a~~~-g~--~~~~-l~------~~~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~~g~ 1621 (2602)
|.++|++||+++|+|++|+. .. .+.. +. .....+++.|++|.+|++| +||++.++++++.+.....
T Consensus 167 i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G~R~G~~i~~~~~~~~~~~~~~-- 244 (357)
T TIGR03539 167 IVAWARERGAVVASDECYLELGWEGRPVSILDPRVCGGDHTGLLAVHSLSKRSNLAGYRAGFVAGDPALVAELLTVRK-- 244 (357)
T ss_pred HHHHHHHcCeEEEEecchhhhccCCCCccceecccCCCccccEEEEeccccccCCCceeEEEEecCHHHHHHHHHHHh--
Confidence 88899999999999999852 11 1111 10 0122477889999887777 7999988776665543221
Q ss_pred CccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEec-CCcH
Q psy15216 1622 GHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGE 1700 (2602)
Q Consensus 1622 ~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~-~~~~ 1700 (2602)
....+++...+.++..+|.. ...+...+.++.++++++.+.|.+ .++.+..+. ...+++... .+..
T Consensus 245 -----~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~L~~--~g~~~~~p~-----~~~~~~~~~~~~~~ 311 (357)
T TIGR03539 245 -----HAGLMVPAPVQAAMVAALGD-DGHVAEQKARYAARRAQLKPALEK--AGFRIDHSE-----AGLYLWATRGEDAW 311 (357)
T ss_pred -----hcccCCCHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHHHHH--cCCCCcCCC-----ccEEEEEECCCCHH
Confidence 11224555555656566642 233566777888888899998877 355443221 122233322 2444
Q ss_pred HHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHH
Q psy15216 1701 SLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLL 1762 (2602)
Q Consensus 1701 ~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L 1762 (2602)
++...| +||.+.+|..|... ..+++||+++. +.++++++++.|
T Consensus 312 ~~~~~l~~~gV~v~pg~~f~~~-----------------~~~~iRis~~~--~~~~i~~~~~~l 356 (357)
T TIGR03539 312 DTVDRLAELGILVAPGDFYGPA-----------------GSQHVRVALTA--TDERIAAAVARL 356 (357)
T ss_pred HHHHHHHhCCEEECCccccCCC-----------------CCCeEEEEecC--CHHHHHHHHHhh
Confidence 565555 79999998765331 12799999985 679999988876
|
This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK08064 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.6e-19 Score=228.33 Aligned_cols=300 Identities=15% Similarity=0.149 Sum_probs=198.5
Q ss_pred HHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHH-HHHhCCcEEEEecc
Q psy15216 1436 EKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIR-KLENDGFRVTYLKP 1514 (2602)
Q Consensus 1436 ~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~-~~~~~G~~v~~v~~ 1514 (2602)
.....++++.+++++|++ +.+ ++++|+.|+..++. +. ++||+|+++++.|+++...+. .+...|+++++++.
T Consensus 53 ~p~~~~le~~lA~l~g~~-~~v-~~~sG~~ai~~~l~-~l----~~Gd~Vlv~~~~y~~~~~~~~~~~~~~G~~v~~v~~ 125 (390)
T PRK08064 53 NPTREALEDIIAELEGGT-KGF-AFASGMAAISTAFL-LL----SKGDHVLISEDVYGGTYRMITEVLSRFGIEHTFVDM 125 (390)
T ss_pred ChhHHHHHHHHHHHhCCC-CeE-EECCHHHHHHHHHH-Hh----CCCCEEEEccCccchHHHHHHHHHHHcCCEEEEECC
Confidence 345788999999999986 344 45666788887775 43 799999999999997766654 34667999999986
Q ss_pred CCCCCcChhHHHhhccCCceEEEEeccccccccccChHHHHHHhhhcCCEEEEecccccCcccccCCCCCccEEEEcccc
Q psy15216 1515 KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK 1594 (2602)
Q Consensus 1515 ~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K 1594 (2602)
+ |+++++++++++|++|++++|+||||.+.|+++|.++|+++|+++++|++++.+....++ ++++|+++.|+||
T Consensus 126 ~-----d~~~l~~~l~~~tklV~l~~p~NptG~~~dl~~I~~la~~~g~~vvvD~a~~~~~~~~~~-~~g~Divv~S~tK 199 (390)
T PRK08064 126 T-----NLEEVAQNIKPNTKLFYVETPSNPLLKVTDIRGVVKLAKAIGCLTFVDNTFLTPLLQKPL-DLGADVVLHSATK 199 (390)
T ss_pred C-----CHHHHHHhcCCCceEEEEECCCCCCcEeccHHHHHHHHHHcCCEEEEECCCCcccccCch-hhCCcEEEeecce
Confidence 3 789999999999999999999999999999999999999999999999999876543333 4689999999999
Q ss_pred c-cCCCc--eEEEEEec-CCCCccccccccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15216 1595 I-YGPKG--IGALYIRR-NPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLM 1670 (2602)
Q Consensus 1595 ~-~gp~G--~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~ 1670 (2602)
+ .|+.| .|++++++ ++.+.+++...+++ ...+....+.+...++ .+..+.++..+.+..+.+.|.
T Consensus 200 ~~~G~~~~laG~~v~~~~~~~~~l~~~~~~~g-------~~~~~~~a~l~~~gl~----tl~~R~~~~~~~a~~la~~L~ 268 (390)
T PRK08064 200 FLAGHSDVLAGLAVVKDEELAQKLYFLQNSFG-------AVLGVQDCWLVLRGLK----TLHVRLEHSSETANKIALYLQ 268 (390)
T ss_pred eccCCccceeEEEEeCCHHHHHHHHHHHHhcC-------CCCCHHHHHHHHcccC----cHHHHHHHHHHHHHHHHHHHh
Confidence 5 56766 58888764 45555554432111 1111111111112222 234555666677777777776
Q ss_pred hcCCcEE-EeCC--CCC---------CCCceEEEEEecCCc---HHHHHhc--CCEEEccccccC--------CCCCChh
Q psy15216 1671 ESIEEIY-INGD--MNN---------RIPHNLNISFNFIEG---ESLLMAI--KDIAVSSGSACT--------SASLEPS 1725 (2602)
Q Consensus 1671 ~~~~gl~-i~~~--~~~---------~~~~~~~~~~~~~~~---~~~~~~L--~gI~v~~g~~~~--------~~~~~~~ 1725 (2602)
+ .|.+. +.-| ++. ....+..++|...+. ..+++.| ..+.++-|...+ .....+.
T Consensus 269 ~-~~~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~sf~~~~~~~~~~f~~~l~l~~~~~s~G~~~sl~~~~~~~~h~~~~~ 347 (390)
T PRK08064 269 E-HPKVQNVYYPGLQTHLGFDIQQSQATSAGAVLSFTLQSEEAVRQFVSHVKLPVFAVSLGAVESILSYPAKMSHAAMPK 347 (390)
T ss_pred c-CCCcceEECCCCCCCccHHHHHHhCCCcceEEEEEECCHHHHHHHHHhCCcceEcccCCCCcceeECCcccccccCCH
Confidence 6 45432 2111 110 011223444433222 2344444 233555563221 0001122
Q ss_pred HHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1726 YVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1726 ~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
......|+. .+.||+|+|.+++++.++.+.++|++
T Consensus 348 ~~~~~~gi~----~~liR~SvGle~~~dli~dl~~Al~~ 382 (390)
T PRK08064 348 EERDERGIT----DGLLRLSVGLENVDDLIADFEQALSY 382 (390)
T ss_pred HHHHhcCCC----CCeEEEEeccCCHHHHHHHHHHHHHh
Confidence 223345554 38899999999999999999999985
|
|
| >TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.2e-18 Score=225.67 Aligned_cols=319 Identities=18% Similarity=0.139 Sum_probs=219.4
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCC
Q psy15216 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK 87 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd 87 (2602)
..+|.+++++.+++......+. .+..-+...+...++++.+++++|.+ ..++.+++++|+..++..+.. ..+++
T Consensus 59 ~~~p~v~~a~~~~~~~~~~~~~--~s~~~~g~~~~~~~Le~~la~~~g~~--~~l~~~sG~~an~~ai~~l~~--~~~~~ 132 (402)
T TIGR01821 59 GQHPEVLQAMHETLDKYGAGAG--GTRNISGTNIPHVELEAELADLHGKE--SALVFTSGYVANDATLATLAK--IIPGC 132 (402)
T ss_pred CCCHHHHHHHHHHHHHcCCCCc--chhhhhCCcHHHHHHHHHHHHHhCCC--eEEEECchHHHHHHHHHHhhC--CCCCC
Confidence 4678899999999876432222 11111122445788999999999953 456666678898888887761 13688
Q ss_pred EEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhcc----CCceEEEEecccCcccccccHHHHHHHHH
Q psy15216 88 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKIC----SDTILVSVMLVNNEIGVIQPILEIGELCR 163 (2602)
Q Consensus 88 ~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~----~~tklv~i~~~~npTG~~~~l~~I~~la~ 163 (2602)
.|+.....|++....+... |+++..++. .|+++++++++ +++++|++++++||+|.+.|+++|.++|+
T Consensus 133 ~v~~~~~~h~s~~~~~~~~---g~~~~~~~~-----~d~~~l~~~l~~~~~~~~~~v~~e~~~~~~G~~~~l~~i~~l~~ 204 (402)
T TIGR01821 133 VIFSDELNHASMIEGIRHS---GAEKFIFRH-----NDVAHLEKLLQSVDPNRPKIIAFESVYSMDGDIAPIEEICDLAD 204 (402)
T ss_pred EEEEcchHhHHHHHHHHHc---CCeEEEECC-----CCHHHHHHHHHhccCCCCeEEEEcCCCCCCCCccCHHHHHHHHH
Confidence 8888877888877666543 777766643 36777777764 36899999999999999999999999999
Q ss_pred hcCCEEEEecccccccc-cc--c-CC--C--CCccEEEeccccccCCCCcEEEEEecCCCCcccceecCCCccccccccC
Q psy15216 164 SKGVIFHCDAAQAVGKI-DI--N-IQ--N--YKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGT 235 (2602)
Q Consensus 164 ~~g~~livD~a~a~g~~-~~--d-l~--~--~~~D~~~~S~~K~~Gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt 235 (2602)
+||+++++|++|+.|.. +. . .. . ..+|+++.|++|.+|+.| ||++.++++++.+.....++ . ..++
T Consensus 205 ~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g~~G-G~i~~~~~~~~~l~~~~~~~----~-~t~~ 278 (402)
T TIGR01821 205 KYGALTYLDEVHAVGLYGPRGGGIAERDGLMHRIDIIEGTLAKAFGVVG-GYIAASRKLIDAIRSYAPGF----I-FTTS 278 (402)
T ss_pred HcCCEEEEeCcccccccCCCCCccchhccCCCCCeEEEEechhhhccCC-ceeecCHHHHHHHHHhCcCc----e-ecCc
Confidence 99999999999986542 11 0 01 1 136888899999999887 89888877666654322111 1 1334
Q ss_pred cchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc-cChhHHHHHh---C
Q psy15216 236 LATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGESLLMAI---K 311 (2602)
Q Consensus 236 ~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~L---~ 311 (2602)
.+...++++.++|+..... ....++..++++++.+.|.+ .|+.+..+.. .+..+.++. ....++.+.| +
T Consensus 279 ~~~~~~aaa~aaL~~~~~~-~~~~~~~~~~~~~l~~~L~~--~g~~~~~~~~----~i~~i~~~~~~~a~~~~~~L~~~~ 351 (402)
T TIGR01821 279 LPPAIAAGATASIRHLKES-QDLRRAHQENVKRLKNLLEA--LGIPVIPNPS----HIVPVIIGDAALCKKVSDLLLNKH 351 (402)
T ss_pred CCHHHHHHHHHHHHHhhcC-HHHHHHHHHHHHHHHHHHHH--cCCCcCCCCC----CEEEEEeCCHHHHHHHHHHHHhcC
Confidence 5555666677888865543 55566677888999999977 3665543322 233333332 1234566665 4
Q ss_pred CeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 312 DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 312 gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
||.+++......+ ....++||+++.++|++|+++++++|++.
T Consensus 352 Gi~v~~~~~p~~~----------------~g~~~lRis~~~~~t~edi~~~~~~l~~~ 393 (402)
T TIGR01821 352 GIYVQPINYPTVP----------------RGTERLRITPTPAHTDKMIDDLVEALLLV 393 (402)
T ss_pred CEEEEeECCCCCC----------------CCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 8999864322211 11267999999999999999999999864
|
This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives. |
| >PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.1e-18 Score=222.87 Aligned_cols=299 Identities=14% Similarity=0.112 Sum_probs=202.9
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHh----C---CCCCcEEEeCCHHHHHHHHHHhhhh
Q psy15216 1404 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI----Y---ADPREIIWTSGATESNNLAIKGAAH 1476 (2602)
Q Consensus 1404 ~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~----g---~~~~~iv~t~gaT~al~~al~~l~~ 1476 (2602)
+.++.+.+++.+.... ..++.. ....++|+.+++++ | +++++|++|+|+++++..++..+.
T Consensus 40 ~~~~~~~~~~~~~~~~-~~Y~~~----------~G~~~lr~~ia~~l~~~~~~~~~~~~~I~it~G~~~~i~~~~~~l~- 107 (364)
T PRK07865 40 PVPPVIQEALAAAADA-PGYPTT----------AGTPELREAIVGWLARRRGVTGLDPAAVLPVIGSKELVAWLPTLLG- 107 (364)
T ss_pred CCCHHHHHHHHHHHhh-CCCCCc----------cCCHHHHHHHHHHHHHHcCCCCCCcccEEEccChHHHHHHHHHHHc-
Confidence 4456777777665432 223322 11345666777766 4 668899999999999999877762
Q ss_pred hhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccCCceEEEEeccccccccccC---hHH
Q psy15216 1477 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILE 1553 (2602)
Q Consensus 1477 ~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~---l~~ 1553 (2602)
+++||+|++++|.|+.+...+..+ |+++..++ +++++. .+++++|++++|+||||.+++ +++
T Consensus 108 --~~~gd~Vl~~~p~y~~~~~~~~~~---g~~~~~~~-------~~~~l~---~~~~~~v~~~~p~NPtG~~~~~~~~~~ 172 (364)
T PRK07865 108 --LGPGDVVVIPELAYPTYEVGARLA---GATVVRAD-------SLTELG---PQRPALIWLNSPSNPTGRVLGVDHLRK 172 (364)
T ss_pred --CCCCCEEEECCCCcccHHHHHHhc---CCEEEecC-------ChhhCC---cccceEEEEcCCCCCCCccCCHHHHHH
Confidence 279999999999999988777665 88888774 223332 267899999999999999999 567
Q ss_pred HHHHhhhcCCEEEEecccccCcc---ccc-CC------CCCccEEEEccccccCCCc--eEEEEEecCCCCccccccccC
Q psy15216 1554 IGELCRSKGVIFHCDAAQAVGKI---DIN-IQ------NYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGG 1621 (2602)
Q Consensus 1554 I~~ia~~~gi~vivD~a~~~g~~---~~~-l~------~~~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~~g~ 1621 (2602)
|.++|++||+++|+|++|+.-.. +.. +. .....+++.|++|.+|++| +||++.++++++.+.....
T Consensus 173 i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~i~~~~~~~~~~~~~~~-- 250 (364)
T PRK07865 173 VVAWARERGAVVASDECYLELGWDAEPVSILDPRVCGGDHTGLLAVHSLSKQSNLAGYRAGFVAGDPALVAELLEVRK-- 250 (364)
T ss_pred HHHHHHHcCCEEEEecchhhhccCCCCCccccccccCCccceEEEEeechhccCCCceeeEEEecCHHHHHHHHHHHH--
Confidence 88889999999999999863211 111 10 1123488889999887777 8999988877666543221
Q ss_pred CccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEe-cCCcH
Q psy15216 1622 GHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN-FIEGE 1700 (2602)
Q Consensus 1622 ~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~-~~~~~ 1700 (2602)
....+.+.+.+.++..++.. ...+++.++++..+++++.+.|.+ .|+.+..+.. ..++++. ..+..
T Consensus 251 -----~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~l~~~L~~--~g~~~~~~~~-----~~~~~~~~~~~~~ 317 (364)
T PRK07865 251 -----HAGMMVPAPVQAAMVAALGD-DAHVREQRERYARRRAVLRPALEA--AGFRVDHSEA-----GLYLWATRGEDCW 317 (364)
T ss_pred -----hcCCCcCHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHH--cCCcccCCCc-----cEEEEEeCCCCHH
Confidence 11123444555555555542 234567777888889999999977 3555443211 2233333 22344
Q ss_pred HHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHH
Q psy15216 1701 SLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK 1763 (2602)
Q Consensus 1701 ~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~ 1763 (2602)
++...| +||.+.+|..|... ..+++||+++. +.+++++++++|+
T Consensus 318 ~~~~~l~~~gv~v~pg~~f~~~-----------------~~~~iRi~~~~--~~~~~~~~~~~l~ 363 (364)
T PRK07865 318 DTVAWLAERGILVAPGDFYGPA-----------------GAQHVRVALTA--TDERIAAAVERLA 363 (364)
T ss_pred HHHHHHHHCCEEEeCccccCcC-----------------CCCEEEEEecC--CHHHHHHHHHHhh
Confidence 555555 89999988765431 12799999975 6899999998875
|
|
| >PLN02263 serine decarboxylase | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-17 Score=211.36 Aligned_cols=291 Identities=15% Similarity=0.124 Sum_probs=220.2
Q ss_pred HHHHHHHHHHHHHHHHhCCCCC--cEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEE
Q psy15216 1434 TAEKAIEKARNEVAQLIYADPR--EIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTY 1511 (2602)
Q Consensus 1434 ~~~~~~~~lr~~ia~~~g~~~~--~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~ 1511 (2602)
...++..++.+++++++|.+++ .-++|+|||+|+..++.+..+. .+...+++++.+|.|+..+..++ |++++.
T Consensus 130 ~s~~~E~~Vi~wla~L~g~p~~~~~G~vtsGGTEaNL~Al~aARe~--~~~~vvy~S~~aH~Sv~KAa~ll---gi~~~~ 204 (470)
T PLN02263 130 HSRQFEVGVLDWFARLWEIEKNEYWGYITNCGTEGNLHGILVGREV--FPDGILYASRESHYSVFKAARMY---RMECVK 204 (470)
T ss_pred hHHHHHHHHHHHHHHHhCCCCCCCeEEEeCcHHHHHHHHHHHHHhh--cCCcEEEEcCCccHHHHHHHHhc---CCcceE
Confidence 5677889999999999999754 3788999999999999988742 24458999999999999998888 999999
Q ss_pred eccCCCCCcChhHHHhhccCC---ceEEEEeccccccccccChHHHHHHhhhcCC-----EEEEecccccCccc------
Q psy15216 1512 LKPKNNGLITLSQLEEKICSD---TILVSVMLVNNEIGVIQPILEIGELCRSKGV-----IFHCDAAQAVGKID------ 1577 (2602)
Q Consensus 1512 v~~~~~~~id~d~l~~~i~~~---t~lv~l~~~~n~tG~~~~l~~I~~ia~~~gi-----~vivD~a~~~g~~~------ 1577 (2602)
||+++++.+|+++|+++|..+ +-+|+.+.+++++|.+.|+++|+++|++||+ |+|||+|++....|
T Consensus 205 Vp~d~~g~mD~~aL~~aI~~d~~~P~iVvataGTT~~GAiDpi~eIa~i~~~~g~~~~~iwlHVDAA~GG~~lPf~~~~~ 284 (470)
T PLN02263 205 VDTLVSGEIDCADFKAKLLANKDKPAIINVNIGTTVKGAVDDLDLVIKTLEECGFSQDRFYIHCDGALFGLMMPFVKRAP 284 (470)
T ss_pred eccCCCCcCcHHHHHHHHHhCCCCcEEEEEEecCCCCcCCCCHHHHHHHHHHcCCccCCeeEEEeccchhhHhhhccccc
Confidence 999999999999999999754 4578889999999999999999999999997 99999998654443
Q ss_pred -ccCCCCCccEEEEcccc-ccCCCceEEEEEecCCCCccc--cccccCCccccCCCCCcchhHHHHHHHHHH-HHHHHHH
Q psy15216 1578 -INIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIE--AQIHGGGHEYGLRSGTLATHQIVGMGEAFR-LARIEMK 1652 (2602)
Q Consensus 1578 -~~l~~~~~D~~v~S~~K-~~gp~G~G~l~~~~~~~~~l~--~~~~g~~~~~~~~~gt~~~~~~~al~~aL~-~~~~~~~ 1652 (2602)
+++.. ++|.++.++|| ++.|.++|++++++.....+. +.|.... ..-..|+.+....+.++..|+ +..+++.
T Consensus 285 ~~df~~-~vDSIsvD~HK~l~~P~~cgvll~R~~~~~~~~~~~~Yl~~~--d~ti~gSR~g~~al~lW~~L~~~G~~G~~ 361 (470)
T PLN02263 285 KVTFKK-PIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASR--DATIMGSRNGHAPIFLWYTLNRKGYRGFQ 361 (470)
T ss_pred ccCCCc-CccEEEECCccccCCCcCEEEEEEehhhHhhhccChHhhCCC--CCCcCCCCCcHHHHHHHHHHHHhCHHHHH
Confidence 23332 38999999999 566999999999976543221 1222111 112345666554556667777 5668899
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecCCcHHHHHhcCCEEEccccccCCCCCChhHHHHHcC
Q psy15216 1653 EELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALG 1732 (2602)
Q Consensus 1653 ~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~L~gI~v~~g~~~~~~~~~~~~~~~~~~ 1732 (2602)
+..++..++++++.++|.+ . ++..+.. |...++.|.......+ .+|..+.. .
T Consensus 362 ~~i~~~~~~A~~l~~~l~~-~-g~~~~~~-----p~s~~V~f~~p~~~~~---~~gW~L~~-----~------------- 413 (470)
T PLN02263 362 KEVQKCLRNAHYLKDRLRE-A-GISAMLN-----ELSSTVVFERPKDEEF---VRRWQLAC-----Q------------- 413 (470)
T ss_pred HHHHHHHHHHHHHHHHHHh-C-CCeEEeC-----CCceEEEEecCchHHh---hcceEEcc-----C-------------
Confidence 9999999999999999988 3 6655533 3344566653322111 13444331 0
Q ss_pred CCccccCCeEEEecCCCCCHHHHHHHHHHHHHhh
Q psy15216 1733 CNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKE 1766 (2602)
Q Consensus 1733 ~~~~~~~~~iRls~~~~~t~edid~li~~L~~~~ 1766 (2602)
.+.+|+.+.+..+.+.+|.+++-|++..
T Consensus 414 ------~~~~Hivvmphv~~~~id~fi~DL~~~~ 441 (470)
T PLN02263 414 ------GNIAHVVVMPSVTIEKLDYFLKELVEKR 441 (470)
T ss_pred ------CCcEEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 1468999988889999999999999743
|
|
| >cd06502 TA_like Low-specificity threonine aldolase (TA) | Back alignment and domain information |
|---|
Probab=99.82 E-value=6e-19 Score=226.60 Aligned_cols=307 Identities=18% Similarity=0.156 Sum_probs=205.5
Q ss_pred CCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccC
Q psy15216 1402 TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKR 1481 (2602)
Q Consensus 1402 ~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~ 1481 (2602)
...+++.+.+++.+...... .+ .......++++.+++++| ++++++++|+|+|+..++.++. ++
T Consensus 7 ~~~~~~~v~~a~~~~~~~~~------~~----~~~~~~~~l~~~~a~~~g--~~~~~~~~~gt~a~~~~~~~l~----~~ 70 (338)
T cd06502 7 VTGPTPEMLEAMAAANVGDD------VY----GEDPTTAKLEARAAELFG--KEAALFVPSGTAANQLALAAHT----QP 70 (338)
T ss_pred CCCCCHHHHHHHHhcccCCc------cc----CCCHHHHHHHHHHHHHhC--CCeEEEecCchHHHHHHHHHhc----CC
Confidence 34577888999887653211 01 112357889999999999 5678899999999999998876 89
Q ss_pred CCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccC-------CceEEEEeccccccccccC---h
Q psy15216 1482 GKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS-------DTILVSVMLVNNEIGVIQP---I 1551 (2602)
Q Consensus 1482 gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~-------~t~lv~l~~~~n~tG~~~~---l 1551 (2602)
||+|+++++.|+++..........|++++.++.+. +.+|++++++++++ ++++|++++|+|+ |.+++ +
T Consensus 71 gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n~-g~~~~~~~l 148 (338)
T cd06502 71 GGSVICHETAHIYTDEAGAPEFLSGVKLLPVPGEN-GKLTPEDLEAAIRPRDDIHFPPPSLVSLENTTEG-GTVYPLDEL 148 (338)
T ss_pred CCeEEEecCcceeeecCCcHHHHcCceEEeecCCC-CcCCHHHHHHHhhccCCCcCCcceEEEEEeecCC-ccccCHHHH
Confidence 99999999999886543222223599999998764 67999999999975 7899999999997 65445 6
Q ss_pred HHHHHHhhhcCCEEEEecccccCc-----ccccCCCCCccEEEEccccccCCCceEEEEEecCCCCccccccccCCcccc
Q psy15216 1552 LEIGELCRSKGVIFHCDAAQAVGK-----IDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYG 1626 (2602)
Q Consensus 1552 ~~I~~ia~~~gi~vivD~a~~~g~-----~~~~l~~~~~D~~v~S~~K~~gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~ 1626 (2602)
++|+++|++||+++++|++|..+. .++.....++|+++.|+||++|++|.++++.++++++.+.+....+
T Consensus 149 ~~i~~~~~~~~~~livDea~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~~g~~~~~~~~~~~~~~~~~~~~----- 223 (338)
T cd06502 149 KAISALAKENGLPLHLDGARLANAAAALGVALKTYKSGVDSVSFCLSKGGGAPVGAVVVGNRDFIARARRRRKQA----- 223 (338)
T ss_pred HHHHHHHHHcCCeEeechHHHHHHHHhcCCCHHHHHhcCCEEEEeccccCCCccceEEECCHHHHHHHHHHHHHh-----
Confidence 789999999999999999874321 1111112467899999999888776455666777766665432111
Q ss_pred CCCCCcch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecCC--cHHH
Q psy15216 1627 LRSGTLAT--HQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIE--GESL 1702 (2602)
Q Consensus 1627 ~~~gt~~~--~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~~--~~~~ 1702 (2602)
.++.+. ....+...+|+ ...+.+..++..++++++.+.|.+ . ++.+..+ ..++..+.++... ...+
T Consensus 224 --~~~~~~~~~~~~a~~~~L~--~~~~~~~~~~~~~~~~~l~~~L~~-~-~~~~~~~----~~~~~~v~~~~~~~~~~~l 293 (338)
T cd06502 224 --GGGMRQSGFLAAAGLAALE--NDLWLRRLRHDHEMARRLAEALEE-L-GGLESEV----QTNIVLLDPVEANAVFVEL 293 (338)
T ss_pred --CCChhhHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHh-c-CCCcccc----cCCeEEEecCCccHHHHHH
Confidence 112222 22222223332 123456667888888999999987 3 3322211 1233333332111 1123
Q ss_pred HHhc-----CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1703 LMAI-----KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1703 ~~~L-----~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
...+ +|+.+.+.. .++||++++.++|++|++++++++++
T Consensus 294 ~~~l~~~~~~gi~~~~~~-----------------------~~~lRi~~~~~~~~~~i~~~~~~l~~ 337 (338)
T cd06502 294 SKEAIERRGEGVLFYAWG-----------------------EGGVRFVTHWDTTEEDVDELLSALKA 337 (338)
T ss_pred HHHHHHhhhCCEEEEecC-----------------------CCeEEEEeecCCCHHHHHHHHHHHhc
Confidence 3322 356554211 16799999999999999999999875
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway. |
| >TIGR01999 iscU FeS cluster assembly scaffold IscU | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.4e-20 Score=196.06 Aligned_cols=95 Identities=78% Similarity=1.231 Sum_probs=88.9
Q ss_pred hhhhhhhhhcCCCCcCcccCCCCcceeeeecCCCCccEEEEEEEEcCCCcEEeeeeeccccchhHhhHHHHHHHHcCCCh
Q psy15216 1771 YSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKTYGCGSAIASSSLVTEWVKGKTL 1850 (2602)
Q Consensus 1771 y~~~i~dh~~~p~~~g~~~~~~~~~~~~~~~~~~cgd~~~~~~~~~~~~~i~~~~~~~~gc~~~~a~~s~~~~~~~g~~~ 1850 (2602)
|++++++||+||+|.|.+++++..++.|+.+||.|||.|+||++|+++|+|+|++|+++||++++||+|+++|+++|||+
T Consensus 1 Y~~~il~~~~~p~n~G~l~~~~~~~~~~~~~np~CGD~i~l~l~v~~~~~I~d~~f~~~GC~~s~Asas~~~e~i~Gktl 80 (124)
T TIGR01999 1 YSEKVLDHYENPRNVGSLDKDDKNVGTGLVGAPACGDVMKLQIKVNDDGIIEDAKFKTFGCGSAIASSSLATELIKGKSL 80 (124)
T ss_pred CcHHHHHHHhCCCCCCCCCCCccccceEEeCCCCCccEEEEEEEECCCCeEEEEEEEecCcHHHHHHHHHHHHHHcCCCH
Confidence 89999999999999999998876667899999999999999999975589999999999999999999999999999999
Q ss_pred hhhhcccccchhhhh
Q psy15216 1851 DEAMSIKNTDIAEEL 1865 (2602)
Q Consensus 1851 ~~~~~i~~~~i~~~l 1865 (2602)
+|+..|++.++.+++
T Consensus 81 ~ea~~i~~~~i~~~l 95 (124)
T TIGR01999 81 EEALKIKNTEIAKEL 95 (124)
T ss_pred HHHHhccHHHHHHHc
Confidence 999999998777654
|
This model represents IscU, a homolog of the N-terminal region of NifU, an Fe-S cluster assembly protein found mostly in nitrogen-fixing bacteria. IscU is considered part of the IscSUA-hscAB-fdx system of Fe-S assembly, whereas NifU is found in nitrogenase-containing (nitrogen-fixing) species. A NifU-type protein is also found in Helicobacter and Campylobacter. IscU and NifU are considered scaffold proteins on which Fe-S clusters are assembled before transfer to apoproteins. This model excludes true NifU proteins as in Klebsiella pneumoniae and Anabaena sp. as well as archaeal homologs. It includes largely proteobacterial and eukaryotic forms. |
| >PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=3e-18 Score=221.50 Aligned_cols=308 Identities=18% Similarity=0.162 Sum_probs=204.0
Q ss_pred HHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHH-HHhCCcEEEEec
Q psy15216 1435 AEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDGFRVTYLK 1513 (2602)
Q Consensus 1435 ~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~-~~~~G~~v~~v~ 1513 (2602)
......++++.++++.|+. ..++++|+|+|+++++.++. ++||+|+++..+|++....+.. +.+.|+++++++
T Consensus 62 ~~p~~~~le~~lA~l~g~~--~av~~sSGt~Al~~al~~ll----~~Gd~Vi~~~~~y~~t~~~~~~~l~~~Gi~v~~vd 135 (433)
T PRK08134 62 SNPTVAVLEERVAALEGGV--GAIATASGQAALHLAIATLM----GAGSHIVASSALYGGSHNLLHYTLRRFGIETTFVK 135 (433)
T ss_pred cChHHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHHh----CCCCEEEEeCCccHHHHHHHHHHHhhCCeEEEEEC
Confidence 3456889999999999976 47899999999999998886 8999999999999987766644 355699999998
Q ss_pred cCCCCCcChhHHHhhccCCceEEEEeccccccccccChHHHHHHhhhcCCEEEEecccccCcccccCCCCCccEEEEccc
Q psy15216 1514 PKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAH 1593 (2602)
Q Consensus 1514 ~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~ 1593 (2602)
++ |+++++++|+++|++|++.+++||+|.+.|+++|.++|++||+++++|++|+.|....++ ++++|++++|.|
T Consensus 136 ~~-----d~~~l~~~i~~~TklV~~e~~~np~g~v~Di~~I~~la~~~gi~livD~t~a~~~~~~pl-~~GaD~vv~S~t 209 (433)
T PRK08134 136 PG-----DIDGWRAAIRPNTRLLFGETLGNPGLEVLDIPTVAAIAHEAGVPLLVDSTFTTPYLLRPF-EHGADLVYHSAT 209 (433)
T ss_pred CC-----CHHHHHHhcCCCCeEEEEECCCcccCcccCHHHHHHHHHHcCCEEEEECCCcccccCCch-hcCCCEEEeccc
Confidence 64 799999999999999999999999999999999999999999999999999998876655 689999999999
Q ss_pred cccCCCc--eEEEEEec-C-------CCCccccccccCCcc--c-----------------cCCCCCcchhHHHHHHHHH
Q psy15216 1594 KIYGPKG--IGALYIRR-N-------PRTRIEAQIHGGGHE--Y-----------------GLRSGTLATHQIVGMGEAF 1644 (2602)
Q Consensus 1594 K~~gp~G--~G~l~~~~-~-------~~~~l~~~~~g~~~~--~-----------------~~~~gt~~~~~~~al~~aL 1644 (2602)
|++|++| +|.+++.. . ....+.+...++... . .....+.+....+.+...|
T Consensus 210 K~l~g~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~~ls~~~A~l~~~gL 289 (433)
T PRK08134 210 KFLGGHGTAIGGVLVDGGRFDWEASGKFPELTEPYAGFHGMVFAEESTVAAFLLRARREGLRDFGACLSPMNAWQLLQGI 289 (433)
T ss_pred cccCCCCCceEEEEEecCccccccccccccccCCcccccccchhhccchhHHHHHHHHHHHHhcCCCCCHHHHHHHhcCC
Confidence 9888777 56665532 1 112222222222110 0 0001111111111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEe-CCC--CC--------CC--CceEEEEEecCC----cHHHHHhcC
Q psy15216 1645 RLARIEMKEELKRILFLQKRLYNGLMESIEEIYIN-GDM--NN--------RI--PHNLNISFNFIE----GESLLMAIK 1707 (2602)
Q Consensus 1645 ~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~-~~~--~~--------~~--~~~~~~~~~~~~----~~~~~~~L~ 1707 (2602)
..+..+.++..+.+.++.+.|.+ .|.+.-+ -|. ++ .. ..+..++|.... ...|++.|+
T Consensus 290 ----~tl~~R~~~~~~nA~~la~~L~~-~p~V~~V~yP~l~~~p~~~~~~~~~~~g~gg~~s~~l~~~~~~~~~f~~~l~ 364 (433)
T PRK08134 290 ----ETLPLRMERHVANTRKVVAFLAS-HPAVARVAHPELESHPDHALAKRLLPRGAGSVFSFDLKGGRAAGRKFIESLK 364 (433)
T ss_pred ----CcHHHHHHHHHHHHHHHHHHHHh-CCCccEEECCCCCCCccHHHHHHhCCCCCceEEEEEecCCHHHHHHHHHhCC
Confidence 23567777888888888888876 6765322 111 11 11 123344444222 245666653
Q ss_pred --CEEEccccccCC---C-----CCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHH
Q psy15216 1708 --DIAVSSGSACTS---A-----SLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK 1763 (2602)
Q Consensus 1708 --gI~v~~g~~~~~---~-----~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~ 1763 (2602)
.+..+-|...+- + ...+.-.....|+.+ +.||||+|..+.++-++.+-++|+
T Consensus 365 l~~~~~slG~~~sL~~~p~~~~h~~~~~~~~~~~Gi~~----~liRlsvGlE~~~dli~dl~~Al~ 426 (433)
T PRK08134 365 LFSHLANVGDARSLVIHPASTTHFRMDAAALAAAGIGE----GTIRLSIGLEDADDLIDDLKRALK 426 (433)
T ss_pred cceeccccCCCCceeeCCCccCcccCCHHHHHhcCCCC----CeEEEEeccCCHHHHHHHHHHHHH
Confidence 333333332211 1 011122234567664 789999998665555555555555
|
|
| >PLN02822 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.5e-18 Score=226.29 Aligned_cols=326 Identities=14% Similarity=0.088 Sum_probs=225.4
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCC
Q psy15216 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK 87 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd 87 (2602)
..++.+.+++.+.++.....+. .....+...+...+++++++++++.+ +.|++++|++ ++..++.++. ++||
T Consensus 123 ~~~~~i~ea~~~al~~~G~g~~--g~r~~yg~~~~~~~Lee~La~~~~~~-~~i~~s~G~~-a~~sai~a~~----~~gd 194 (481)
T PLN02822 123 IGNEKIKESCTSALEKYGVGSC--GPRGFYGTIDVHLDCETKIAKFLGTP-DSILYSYGLS-TIFSVIPAFC----KKGD 194 (481)
T ss_pred CCCHHHHHHHHHHHHHhCCCCc--ccCccccCHHHHHHHHHHHHHHhCCC-CEEEECCHHH-HHHHHHHHhC----CCCC
Confidence 4689999999999976321111 11112345667899999999999964 6799998877 6788888887 8999
Q ss_pred EEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCC--CccChHHHHhhc--cCCc-eEEEEecccCcccccccHHHHHHHH
Q psy15216 88 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN--GLITLSQLEEKI--CSDT-ILVSVMLVNNEIGVIQPILEIGELC 162 (2602)
Q Consensus 88 ~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~--~~ld~e~l~~~i--~~~t-klv~i~~~~npTG~~~~l~~I~~la 162 (2602)
.|++....|.++...+... |.++++++.++. ...+++++++.. ++++ ++|++..+++++|.+.|+++|.++|
T Consensus 195 ~Ii~d~~~H~s~~~~~~ls---~~~~~~~~~nd~~~l~~~l~~~~~~~~~~~~~~~~Ivve~i~~~~G~i~~L~~i~~l~ 271 (481)
T PLN02822 195 IIVADEGVHWGIQNGLYLS---RSTIVYFKHNDMESLRNTLEKLTAENKRKKKLRRYIVVEAIYQNSGQIAPLDEIVRLK 271 (481)
T ss_pred EEEEeCCccHHHHHHHHHc---CCeEEEECCCCHHHHHHHHHHHhhhhcccCCCcEEEEEecCCCCCCCccCHHHHHHHH
Confidence 9999998888876666555 788999886531 122233333222 1345 7999999999999999999999999
Q ss_pred HhcCCEEEEeccccccccc---------ccCCCCCccEEEeccccccCCCCcEEEEEecCCCCcccceecCCCccccccc
Q psy15216 163 RSKGVIFHCDAAQAVGKID---------INIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRS 233 (2602)
Q Consensus 163 ~~~g~~livD~a~a~g~~~---------~dl~~~~~D~~~~S~~K~~Gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~ 233 (2602)
++||+++|+|++|++|... +++....+|+++.|++|.+|+.| ||+++++++++.++....+ ....
T Consensus 272 ~k~~~~LIvDEa~s~gvlG~~G~G~~e~~~v~~~~~dii~~s~sKalg~~G-G~i~g~~~ii~~~~~~~~~-----~~fs 345 (481)
T PLN02822 272 EKYRFRVLLDESNSFGVLGKSGRGLSEHFGVPIEKIDIITAAMGHALATEG-GFCTGSARVVDHQRLSSSG-----YVFS 345 (481)
T ss_pred HHcCCEEEEECCccccccCCCCCChHHHcCCCCCCCeEEEecchhhhhhCC-eEEEcCHHHHHHHHhcCCc-----eeec
Confidence 9999999999999866432 12222257899999999999888 9999998877665532111 1122
Q ss_pred cCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEccc------C---hh
Q psy15216 234 GTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI------E---GE 304 (2602)
Q Consensus 234 gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~------~---~~ 304 (2602)
++.+.....+..++|+.... ..+..++.+++++++++.|.+ .+|+.+..+.. ..+..+.++.. + ..
T Consensus 346 a~lPp~~~~Aa~~aL~~l~~-~~~~~~~l~~~~~~l~~~L~~-~~g~~~~~~~~---spi~~l~l~~~~~~~~~~~~~~~ 420 (481)
T PLN02822 346 ASLPPYLASAAITAIDVLED-NPSVLAKLKENIALLHKGLSD-IPGLSIGSNTL---SPIVFLHLEKSTGSAKEDLSLLE 420 (481)
T ss_pred cccCHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHh-cCCcccCCCCC---CCEEEEEeCCCcccccchHHHHH
Confidence 33334444445578875543 367888999999999999987 56776654332 23344445421 1 13
Q ss_pred HHHHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 305 SLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 305 ~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
++.+.| +||.+.++.....+ . ...+.++|++++..+|++||++++++|++.
T Consensus 421 ~~~~~Ll~e~GV~v~~~~~~~~~------------~--~~~~~~lRi~is~~~t~edI~~~~~~l~~~ 474 (481)
T PLN02822 421 HIADRMLKEDSVLVVVSKRSTLD------------K--CRLPVGIRLFVSAGHTESDILKASESLKRV 474 (481)
T ss_pred HHHHHHHhcCCEEEEeeCCCCcC------------C--CCCCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 455555 48999865321110 0 001246999999889999999999999964
|
|
| >PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.3e-19 Score=226.39 Aligned_cols=333 Identities=19% Similarity=0.181 Sum_probs=219.8
Q ss_pred HHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCEEE
Q psy15216 1407 PRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHII 1486 (2602)
Q Consensus 1407 ~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vl 1486 (2602)
.+.++++.+.++..+.... ....+++++++++++|.. +++.++|+|.|+.+++.++. +++||+|+
T Consensus 5 ~e~~~~v~~~l~s~~~~~~----------g~~~~~fE~~~a~~~g~~--~~~~~~sgt~Al~~al~~l~---~~~gdeVi 69 (363)
T PF01041_consen 5 EEEIDAVLEVLRSGWLSTY----------GPYVEEFEKEFAEYFGVK--YAVAVSSGTSALHLALRALG---LGPGDEVI 69 (363)
T ss_dssp HHHHHHHHHHHHHTCCSSS----------SHHHHHHHHHHHHHHTSS--EEEEESSHHHHHHHHHHHTT---GGTTSEEE
T ss_pred HHHHHHHHHHHHhCCccCC----------CHHHHHHHHHHHHHhCCC--eEEEeCChhHHHHHHHHhcC---CCcCceEe
Confidence 3567777788776432221 135788999999999954 89999999999999999987 68999999
Q ss_pred EcCCCCcchHHHHHHHHhCCcEEEEeccCC-CCCcChhHHHhhccCCceEEEEeccccccccccChHHHHHHhhhcCCEE
Q psy15216 1487 TVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIF 1565 (2602)
Q Consensus 1487 v~~~~~~s~~~~~~~~~~~G~~v~~v~~~~-~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~~ia~~~gi~v 1565 (2602)
+|..+++++..++..+ |++++++++++ ++.+|++.++++|+++|++|+++|. .|...|+++|.++|++||++|
T Consensus 70 ~p~~t~~~~~~ai~~~---G~~pv~~Di~~~~~~id~~~~~~~i~~~t~ai~~~h~---~G~~~d~~~i~~~~~~~~i~l 143 (363)
T PF01041_consen 70 VPAYTFPATASAILWA---GAEPVFVDIDPETLNIDPEALEKAITPKTKAILVVHL---FGNPADMDAIRAIARKHGIPL 143 (363)
T ss_dssp EESSS-THHHHHHHHT---T-EEEEE-BETTTSSB-HHHHHHHHHTTEEEEEEE-G---GGB---HHHHHHHHHHTT-EE
T ss_pred cCCCcchHHHHHHHHh---ccEEEEEeccCCcCCcCHHHHHHHhccCccEEEEecC---CCCcccHHHHHHHHHHcCCcE
Confidence 9999999999988887 99999999994 7889999999999999999999998 899999999999999999999
Q ss_pred EEecccccCccccc--CCCCCccEEEEccc--cccCCCceEEEEEecC-CCCccccccccCCcc---ccCCCCC-cc-hh
Q psy15216 1566 HCDAAQAVGKIDIN--IQNYKVDLMSFSAH--KIYGPKGIGALYIRRN-PRTRIEAQIHGGGHE---YGLRSGT-LA-TH 1635 (2602)
Q Consensus 1566 ivD~a~~~g~~~~~--l~~~~~D~~v~S~~--K~~gp~G~G~l~~~~~-~~~~l~~~~~g~~~~---~~~~~gt-~~-~~ 1635 (2602)
|.|+||+.|...-+ +.. --|+.++||| |.+.....|+++.+++ +.++++.+...|... ..+.... +. -.
T Consensus 144 IeD~a~a~g~~~~g~~~G~-~gd~~~fSf~~~K~i~~geGG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~n~ 222 (363)
T PF01041_consen 144 IEDAAQAFGARYKGRPVGS-FGDIAIFSFHPTKIITTGEGGAVVTNDPELAERARALRNHGRSRDAFRRYRHELPPGYNF 222 (363)
T ss_dssp EEE-TTTTT-EETTEETTS-SSSEEEEESSTTSSS-SSS-EEEEESTHHHHHHHHHHTBTTEETSECSTTEESSSS--B-
T ss_pred EEccccccCceeCCEeccC-CCCceEecCCCCCCCcCCCCeeEEecHHHHHHHhhhhhccCcCccccccccccccCCccc
Confidence 99999999874322 111 2489999987 6553222588888764 333333222211110 1111000 00 01
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCC---CCCceEEEEEecC---CcHHHHHhc--
Q psy15216 1636 QIVGMGEAFRLAR-IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNN---RIPHNLNISFNFI---EGESLLMAI-- 1706 (2602)
Q Consensus 1636 ~~~al~~aL~~~~-~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~---~~~~~~~~~~~~~---~~~~~~~~L-- 1706 (2602)
.+..+.+|+...+ ..++...++.+++.+++.+.|.. ++++.....+.. ..+....+.++.. +.+++...|
T Consensus 223 rm~~~~AAigl~QL~~L~~~~~~R~~~a~~y~~~L~~-~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~rd~l~~~L~~ 301 (363)
T PF01041_consen 223 RMSELQAAIGLAQLKRLDEIIARRRENAQRYREALAG-IPGIKPPPIPDGAERSSYYRFPIRLPDEALADRDELVEALRA 301 (363)
T ss_dssp B-BHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTT-GTTEEEEGCGTTTEEBCESSEEEEETCCGCSTHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhc-CCCcccccccccccccccccccccccccccchHHHHHHHHHH
Confidence 1222333433222 45788888999999999999988 788866544332 2333444555432 467777777
Q ss_pred CCEEEccccccCCCCCChhHHHH------HcCCCccccCCeEEEecCCCCCHHHHHHHHHHHH
Q psy15216 1707 KDIAVSSGSACTSASLEPSYVLR------ALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK 1763 (2602)
Q Consensus 1707 ~gI~v~~g~~~~~~~~~~~~~~~------~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~ 1763 (2602)
+||..+... ..+.+.++.+... .++..+......+.|++++..+.+|+++++++|+
T Consensus 302 ~GI~~~~~~-~~pl~~~~~~~~~~~~~~~~~P~ae~l~~r~l~LP~~~~lt~edv~~I~~~ir 363 (363)
T PF01041_consen 302 RGIETRPHY-PKPLHRQPVYRSYPYYAPGDLPNAERLSQRLLSLPIHPRLTEEDVDYIAEAIR 363 (363)
T ss_dssp TTBEEBCST-SSCGGGSGGGTTGEEEETSSSHHHHHHHHHEEEEEHSTTSCHHHHHHHHHHHH
T ss_pred CCCcccccc-cCchhhhHHHHhcCccccCCCHHHHHHHhCeEECcCCCCCCHHHHHHHhhccC
Confidence 789887544 1121111211110 1222222334689999999999999999999885
|
The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A .... |
| >PRK08249 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.7e-19 Score=226.46 Aligned_cols=308 Identities=16% Similarity=0.093 Sum_probs=208.8
Q ss_pred cchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHHH-HHhCCc
Q psy15216 33 HIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDGF 111 (2602)
Q Consensus 33 ~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~-~~~~G~ 111 (2602)
+.+++...+..+++++++|+++|.+ ..++++|+++|+.+++.++. ++||+|+++.+.|+++...+.. +...|+
T Consensus 56 ~~y~r~~~p~~~~le~~lA~l~g~~--~~i~~ssG~~Ai~~~l~all----~~GD~Vi~~~~~y~~~~~~~~~~~~~~Gi 129 (398)
T PRK08249 56 HIYSRNTNPTVQAFEEKVRILEGAE--AATAFSTGMAAISNTLYTFL----KPGDRVVSIKDTYGGTNKIFTEFLPRMGV 129 (398)
T ss_pred ccccCCCChHHHHHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHhc----CCCCEEEEcCCchHHHHHHHHHHHhhCCe
Confidence 5566666778899999999999974 45667777899999998887 7999999999999998766653 456799
Q ss_pred EEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHhcCCEEEEecccccccccccCCCCCccE
Q psy15216 112 RVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDL 191 (2602)
Q Consensus 112 ~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~~g~~livD~a~a~g~~~~dl~~~~~D~ 191 (2602)
++++++. .|+++++++++++|++|++++|+||||.+.|+++|.++||++|+++++|++++.+.....+ .+++|+
T Consensus 130 ~v~~vd~-----~d~e~l~~~i~~~tklV~ie~p~NPtg~v~dl~~I~~la~~~gi~livD~t~a~~~~~~~l-~~~~Di 203 (398)
T PRK08249 130 DVTLCET-----GDHEQIEAEIAKGCDLLYLETPTNPTLKIVDIERLAAAAKKVGALVVVDNTFATPINQNPL-ALGADL 203 (398)
T ss_pred EEEEcCC-----CCHHHHHHhcCCCCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCcCccccCCch-hhCCCE
Confidence 9888763 5899999999999999999999999999999999999999999999999999866543222 367899
Q ss_pred EEeccccccCCCC---cEEEEEecCCCCcccceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy15216 192 MSFSAHKIYGPKG---IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKR 268 (2602)
Q Consensus 192 ~~~S~~K~~Gp~G---~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~ 268 (2602)
++.|++|++|++| .|+++.+++++++++.... ...++.+....+.+..+++. +....++..+++..
T Consensus 204 vv~S~sK~l~g~~~~~gG~vv~~~~l~~~l~~~~~-------~~g~~~s~~~a~l~l~~l~t----L~~R~~~~~~na~~ 272 (398)
T PRK08249 204 VIHSATKFLSGHADALGGVVCGSKELMEQVYHYRE-------INGATMDPMSAYLILRGMKT----LKLRVRQQQESAMA 272 (398)
T ss_pred EeccCceecCCCCCceEEEEECCHHHHHHHHHHHH-------hcCCCCCHHHHHHHHhCcch----HHHHHHHHHHHHHH
Confidence 9999999887654 4777777666666543321 11223333333333344442 34555666777788
Q ss_pred HHHHHhhccCceEE-eCC--CCC-----------CCCceEEEEEccc--ChhHHHHHhC--CeEEcccccCCC---C---
Q psy15216 269 LYNGLMESIEEIYI-NGD--MNN-----------RIPHNLNISFNFI--EGESLLMAIK--DIAVSSGSACTS---A--- 324 (2602)
Q Consensus 269 l~~~L~~~~~g~~l-~~~--~~~-----------~~~~~~~~~~~~~--~~~~~~~~L~--gI~v~~g~~~~~---~--- 324 (2602)
+.+.|.+ .|.+.- +-| +++ ....++.|.+.+. ...++++.|+ .+.++-|...+- +
T Consensus 273 la~~L~~-~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~sf~~~~~~~~~~~f~~~l~l~~~~~s~G~~~sl~~~~~~~ 351 (398)
T PRK08249 273 LAKYLQT-HPKVEAVYYPGLETHPNHEIAKAQMRGFGGILSFVLKGGMDTVKRLLPKLRYAHRAANLGAVETIYGPARTT 351 (398)
T ss_pred HHHHHHc-CCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEEcCCHHHHHHHHHhCCcceEccCCCCCCceeeCCccc
Confidence 8888876 565542 211 111 1122334444321 1345666663 444444432221 0
Q ss_pred -C-CChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 325 -S-LEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 325 -~-~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
| ..+.-.....|+. ++.||+|+|..+.++-++.+.++|+.
T Consensus 352 ~~~~~~~~~~~~~gi~----~~liR~svGlE~~~dl~~dl~~al~~ 393 (398)
T PRK08249 352 SHVENTLEERAALGIP----EGLVRISVGIEDTEDLIADLEQAFAH 393 (398)
T ss_pred ccccCCHHHHHhcCCC----CCeEEEEeccCCHHHHHHHHHHHHHH
Confidence 0 0111223346665 37899999987666655566666653
|
|
| >PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.8e-18 Score=225.65 Aligned_cols=316 Identities=16% Similarity=0.166 Sum_probs=219.1
Q ss_pred CCCHHHHHHHHHHHhhc-cCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCC
Q psy15216 1404 PIDPRVVDKMIPYLRVQ-FGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRG 1482 (2602)
Q Consensus 1404 ~~~~~v~eal~~~l~~~-~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~g 1482 (2602)
+.++.+.+++.+.+... .++++. .......++.+++++++++++|.+ ++|++|+| ++++..++.++. ++|
T Consensus 56 ~~~~~i~~a~~~~~~~~~~~~~~~---~~~~G~~~l~~~l~~~la~~~g~~-~~i~~tsG-~~a~~~~~~~l~----~~g 126 (397)
T PRK06939 56 ANHPELIAAAKAALDSHGFGMASV---RFICGTQDLHKELEEKLAKFLGTE-DAILYSSC-FDANGGLFETLL----GKE 126 (397)
T ss_pred CCCHHHHHHHHHHHHHcCCCCccc---ccccCCcHHHHHHHHHHHHHhCCC-cEEEEcCh-HHHHHHHHHHhC----CCC
Confidence 46788899999888652 222221 111223456788999999999975 56777776 788888888776 899
Q ss_pred CEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccC------CceEEEEeccccccccccChHHHHH
Q psy15216 1483 KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS------DTILVSVMLVNNEIGVIQPILEIGE 1556 (2602)
Q Consensus 1483 d~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~------~t~lv~l~~~~n~tG~~~~l~~I~~ 1556 (2602)
|+|+++++.|+++...+..+ |+++..++. .|++++++.+++ ++++|++.++.|++|.+.++++|.+
T Consensus 127 d~vi~~~~~~~~~~~~~~~~---~~~~~~~~~-----~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~~G~~~~~~~l~~ 198 (397)
T PRK06939 127 DAIISDALNHASIIDGVRLC---KAKRYRYAN-----NDMADLEAQLKEAKEAGARHKLIATDGVFSMDGDIAPLPEICD 198 (397)
T ss_pred CEEEEEhhhhHHHHHHHHhc---CCceEEeCC-----CCHHHHHHHHHhhhccCCCCeEEEEecCcCCCCCcCCHHHHHH
Confidence 99999999999988776655 777776653 478888888763 7889998889999999999999999
Q ss_pred HhhhcCCEEEEecccccCcccc------cCCC--CCccEEEEcccccc-CCCceEEEEEecCCCCccccccccCCccccC
Q psy15216 1557 LCRSKGVIFHCDAAQAVGKIDI------NIQN--YKVDLMSFSAHKIY-GPKGIGALYIRRNPRTRIEAQIHGGGHEYGL 1627 (2602)
Q Consensus 1557 ia~~~gi~vivD~a~~~g~~~~------~l~~--~~~D~~v~S~~K~~-gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~ 1627 (2602)
+|++||+++|+|++|+.|.... .... .++|++++|+||.+ |++ +||+++++++++.+...... ..
T Consensus 199 la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~g~r-~G~v~~~~~~~~~l~~~~~~-----~~ 272 (397)
T PRK06939 199 LADKYDALVMVDDSHAVGFVGENGRGTVEHFGVMDRVDIITGTLGKALGGAS-GGYTAGRKEVIDWLRQRSRP-----YL 272 (397)
T ss_pred HHHHhCCEEEEECcccccCcCCCCCCHHHHcCCCCCCcEEEEECHHHhCccC-ceEEEeCHHHHHHHHHhCcc-----cc
Confidence 9999999999999997654321 1111 14689999999955 666 49999988776665432110 01
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEec-CCcHHHHHhc
Q psy15216 1628 RSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGESLLMAI 1706 (2602)
Q Consensus 1628 ~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~L 1706 (2602)
..++++...+.++.++++.... .++.++++.++++++++.|.+ .++.+..+ .. .+..+.++. .+..++...|
T Consensus 273 ~~~~~~~~~~~a~~~al~~~~~-~~~~~~~~~~~~~~l~~~L~~--~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~L 345 (397)
T PRK06939 273 FSNSLAPAIVAASIKVLELLEE-SDELRDRLWENARYFREGMTA--AGFTLGPG-EH---PIIPVMLGDAKLAQEFADRL 345 (397)
T ss_pred ccCCCCHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHH--cCCCcCCC-CC---CEEEEEECCHHHHHHHHHHH
Confidence 1233444445556566765542 356778889999999999987 24443321 11 122222322 2345666666
Q ss_pred --CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1707 --KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1707 --~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
+||.+.++. +... ....++||++++.+++.+++++++++|++.
T Consensus 346 ~~~gI~v~~~~-~~~~---------------~~~~~~iRi~~~~~~~~~~i~~~l~~L~~~ 390 (397)
T PRK06939 346 LEEGVYVIGFS-FPVV---------------PKGQARIRTQMSAAHTKEQLDRAIDAFEKV 390 (397)
T ss_pred HHCCceEeeeC-CCCC---------------CCCCceEEEEECCCCCHHHHHHHHHHHHHH
Confidence 789887433 2110 011268999999989999999999999873
|
|
| >PRK05968 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.7e-18 Score=222.93 Aligned_cols=308 Identities=16% Similarity=0.134 Sum_probs=216.5
Q ss_pred cchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHH-HHHhCCc
Q psy15216 33 HIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIR-KLENDGF 111 (2602)
Q Consensus 33 ~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~-~~~~~G~ 111 (2602)
+.+++...+..+++++.+|+++|.+ ..++++|++.|+.+++.++. ++||+|+++.+.|++....+. .+...|+
T Consensus 55 ~~Y~r~~~p~~~~le~~lA~l~g~~--~av~~~sG~~Ai~~al~al~----~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~ 128 (389)
T PRK05968 55 PIYSRGDNPTVRAFEEMLAKLEGAE--DARGFASGMAAISSTVLSFV----EPGDRIVAVRHVYPDAFRLFETILKRMGV 128 (389)
T ss_pred ccccCCCChhHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHHh----CCCCEEEEeCCCchHHHHHHHHHHHHcCc
Confidence 3444444556889999999999986 33445667789998888876 899999999999998766554 4466799
Q ss_pred EEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHhcCCEEEEecccccccccccCCCCCccE
Q psy15216 112 RVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDL 191 (2602)
Q Consensus 112 ~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~~g~~livD~a~a~g~~~~dl~~~~~D~ 191 (2602)
++++++.+ |++++++++ ++|++|++++|+|+++.+.|+++|+++||+||+++++|++++.+.....+ .+++|+
T Consensus 129 ~v~~vd~~-----d~~~l~~~i-~~tklV~ie~pt~~~~~~~dl~~i~~la~~~gi~vivD~a~a~~~~~~p~-~~g~Di 201 (389)
T PRK05968 129 EVDYVDGR-----DEEAVAKAL-PGAKLLYLESPTSWVFELQDVAALAALAKRHGVVTMIDNSWASPVFQRPI-TLGVDL 201 (389)
T ss_pred eEEEeCCC-----CHHHHHHhc-ccCCEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcchhccCch-hcCCcE
Confidence 99998743 889999998 67999999999999999999999999999999999999999877532222 367899
Q ss_pred EEeccccccC-CCC--cEEEEEecCCCCcccceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy15216 192 MSFSAHKIYG-PKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKR 268 (2602)
Q Consensus 192 ~~~S~~K~~G-p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~ 268 (2602)
+++|++|.++ +.+ .|+++.+++++++++.....+ ..+..+....+.+..+|+ .+..+.++..+++++
T Consensus 202 vv~S~tK~l~g~~~~~gG~i~~~~~~~~~l~~~~~~~------~g~~~~~~~A~~~l~~L~----tl~~r~~~~~~~a~~ 271 (389)
T PRK05968 202 VIHSASKYLGGHSDTVAGVVAGSKEHIARINAEAYPY------LGAKLSPFEAWLLLRGLR----TLPLRMKAHEASALE 271 (389)
T ss_pred EEeeccccccCCCCeEEEEEEECHHHHHHHHHHHHHh------CCCCCChHHHHHHHcccC----cHHHHHHHHHHHHHH
Confidence 9999999655 433 688888887666665322110 112233222222323333 346666777777888
Q ss_pred HHHHHhhccCceEEeCCCC---C------CCCceEEEEEc-ccChhHHHHHh--CCeEEcccccCC---CCCC-----Ch
Q psy15216 269 LYNGLMESIEEIYINGDMN---N------RIPHNLNISFN-FIEGESLLMAI--KDIAVSSGSACT---SASL-----EP 328 (2602)
Q Consensus 269 l~~~L~~~~~g~~l~~~~~---~------~~~~~~~~~~~-~~~~~~~~~~L--~gI~v~~g~~~~---~~~~-----~~ 328 (2602)
+.+.|++ .|++..+..+. + ....++.|.+. ..+..++++.| .++.++.|..++ |... .+
T Consensus 272 la~~L~~-~p~v~~v~~p~l~~~~~~~~~g~g~~~sf~~~~~~~~~~f~~~L~~~~~~~s~G~~~slv~p~~~~~~~~~~ 350 (389)
T PRK05968 272 IARRLKA-HPVVERVCHPALANHPPAGLSGTSGLFSFIFREGIDVRAFADALKLFRLGVSWGGHESLVVPAEVVLQQKAQ 350 (389)
T ss_pred HHHHHHh-CCCccEEECCCCCCChHHhCCCCceEEEEEECCHHHHHHHHHhCCccEEecCCCCCCceeeeCcccccccCC
Confidence 8888877 68775443221 0 11224444454 23456777777 678888887776 2110 11
Q ss_pred HHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 329 SYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 329 ~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
......+|++ ++.||+|+|.+++++=++.+-++|++
T Consensus 351 ~~~~~~~gi~----~~liR~SvGlE~~~dl~~dl~~al~~ 386 (389)
T PRK05968 351 PNSAARFGVS----PRSVRLHVGLEGTEALWADLEQALAA 386 (389)
T ss_pred HHHHHhcCCC----CCeEEEEeccCCHHHHHHHHHHHHHH
Confidence 3334466765 38899999999888888888888774
|
|
| >PRK08175 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.2e-18 Score=221.47 Aligned_cols=310 Identities=16% Similarity=0.149 Sum_probs=212.3
Q ss_pred CCCHHHHHHHHHHHhh--ccCCCCCccchhHHHHHHHHHHHHHHHHHHh----C--CCCC-cEEEeCCHHHHHHHHHHhh
Q psy15216 1404 PIDPRVVDKMIPYLRV--QFGNPASRNHIYGWTAEKAIEKARNEVAQLI----Y--ADPR-EIIWTSGATESNNLAIKGA 1474 (2602)
Q Consensus 1404 ~~~~~v~eal~~~l~~--~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~----g--~~~~-~iv~t~gaT~al~~al~~l 1474 (2602)
+.++.+.+++.+.+.. ...++.. ....++|+++++++ | ++++ ++++|+|++++++.++.++
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~Y~~~----------~G~~~lr~aia~~~~~~~g~~~~~~~~i~~t~G~~~~l~~~~~~~ 111 (395)
T PRK08175 42 PTPPHIVEKLCEVAQRPDTHGYSTS----------RGIPRLRRAISRWYQDRYDVDIDPESEAIVTIGSKEGLAHLMLAT 111 (395)
T ss_pred CCCHHHHHHHHHHHhCCCcCCCCCC----------CCCHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHHHHHHHHh
Confidence 3455566776665532 1122211 12456666666664 4 3566 7999999999999998888
Q ss_pred hhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhcc---CCceEEEEeccccccccccCh
Q psy15216 1475 AHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKIC---SDTILVSVMLVNNEIGVIQPI 1551 (2602)
Q Consensus 1475 ~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~---~~t~lv~l~~~~n~tG~~~~l 1551 (2602)
. ++||+|++++|.|+.+...+... |++++.++.+.++ .+.+++++++. ++++++++++|+||||.+++.
T Consensus 112 ~----~~gd~Vlv~~P~y~~~~~~~~~~---g~~~~~v~~~~~~-~~~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~ 183 (395)
T PRK08175 112 L----DHGDTVLVPNPSYPIHIYGAVIA---GAQVRSVPLVEGV-DFFNELERAIRESYPKPKMMILGFPSNPTAQCVEL 183 (395)
T ss_pred C----CCCCEEEEcCCCCcchHHHHHHc---CCeEEEEecccCC-CcHHHHHHHHhhccCCceEEEEeCCCCCCCCCCCH
Confidence 6 89999999999999987777655 9999999887643 24788888776 478999999999999999996
Q ss_pred ---HHHHHHhhhcCCEEEEecccccCc----cccc---CCC-CCccEEEEccccccCCCc--eEEEEEecCCCCcccccc
Q psy15216 1552 ---LEIGELCRSKGVIFHCDAAQAVGK----IDIN---IQN-YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQI 1618 (2602)
Q Consensus 1552 ---~~I~~ia~~~gi~vivD~a~~~g~----~~~~---l~~-~~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~ 1618 (2602)
++|+++|++||+++|+|++++... .+.. +.. .+..+++.|++|.+|.+| +||++.++++++.+....
T Consensus 184 ~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~pGlRiG~~~~~~~l~~~~~~~~ 263 (395)
T PRK08175 184 EFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPGAKDVAVEFFTLSKSYNMAGWRIGFMVGNPELVSALARIK 263 (395)
T ss_pred HHHHHHHHHHHHcCcEEEEecchHhhccCCCCCcchhcCCCcccCEEEEeeccccccCcchhheeeeCCHHHHHHHHHHH
Confidence 789999999999999999975311 1111 111 123467789999888778 799999887776654322
Q ss_pred ccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecC-
Q psy15216 1619 HGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI- 1697 (2602)
Q Consensus 1619 ~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~- 1697 (2602)
.....+.+.+.+.++..++......++..+.++++.++++.+.|.. . ++.+..+. .+.++++...
T Consensus 264 -------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~-~-~~~~~~p~-----~g~~i~i~l~~ 329 (395)
T PRK08175 264 -------SYHDYGTFTPLQVAAIAALEGDQQCVRDIAEQYKRRRDVLVKGLHE-A-GWMVEMPK-----ASMYVWAKIPE 329 (395)
T ss_pred -------hhcccCCCcHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH-c-CCcccCCC-----EEEEEEEECCc
Confidence 1111223333444444556533345677788888889999999987 3 55443221 2233333321
Q ss_pred -----CcHHHHHhc---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1698 -----EGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1698 -----~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
+..++...+ +||.+.+|..|... ..+++||++. .+.+.+..+++.|++
T Consensus 330 ~~~~~~~~~~~~~l~~~~gv~v~p~~~f~~~-----------------~~~~lRis~~--~~~~~~~~al~~l~~ 385 (395)
T PRK08175 330 PYAAMGSLEFAKKLLNEAKVCVSPGIGFGDY-----------------GDTHVRFALI--ENRDRIRQAIRGIKA 385 (395)
T ss_pred ccCCCCHHHHHHHHHHhCCEEEeCchhhCcC-----------------CCCeEEEEeC--CCHHHHHHHHHHHHH
Confidence 235665543 69999998876432 1268999996 467888888888876
|
|
| >TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.3e-18 Score=221.12 Aligned_cols=270 Identities=17% Similarity=0.165 Sum_probs=197.7
Q ss_pred HHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCC
Q psy15216 1440 EKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGL 1519 (2602)
Q Consensus 1440 ~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ 1519 (2602)
.++|+++++++|.++++|++|+|+++++..+..++ .+| .|++++|.|+.+...++. .|.+++.++
T Consensus 50 ~~lr~~la~~~~~~~~~i~~t~G~~~~i~~~~~~l-----~~g-~vl~~~p~y~~~~~~~~~---~g~~~~~~~------ 114 (330)
T TIGR01140 50 DELRAAAAAYYGLPAASVLPVNGAQEAIYLLPRLL-----APG-RVLVLAPTYSEYARAWRA---AGHEVVELP------ 114 (330)
T ss_pred HHHHHHHHHHhCCChhhEEECCCHHHHHHHHHHHh-----CCC-eEEEeCCCcHHHHHHHHH---cCCEEEEeC------
Confidence 78999999999998899999999999999976553 477 699999999887766544 499998886
Q ss_pred cChhHHHhhccCCceEEEEeccccccccccC---hHHHHHHhhhcCCEEEEecccccCcccccCC----CCCccEEEEcc
Q psy15216 1520 ITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQAVGKIDINIQ----NYKVDLMSFSA 1592 (2602)
Q Consensus 1520 id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~---l~~I~~ia~~~gi~vivD~a~~~g~~~~~l~----~~~~D~~v~S~ 1592 (2602)
|++.+++.+ ++++++++++|+||||.++| +++|+++|++||+++|+|++|.......++. ..+.++++.|+
T Consensus 115 -d~~~l~~~~-~~~~~v~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~i~~~S~ 192 (330)
T TIGR01140 115 -DLDRLPAAL-EELDVLVLCNPNNPTGRLIPPETLLALAARLRARGGWLVVDEAFIDFTPDASLAPQAARFPGLVVLRSL 192 (330)
T ss_pred -CHHHHHhhc-ccCCEEEEeCCCCCCCCCCCHHHHHHHHHHhHhcCCEEEEECcccccCCccchhhHhccCCCEEEEEec
Confidence 789999998 56889999999999999999 6677888899999999999985322111211 12456889999
Q ss_pred ccccCCCc--eEEEEEecCCCCccccccccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15216 1593 HKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLM 1670 (2602)
Q Consensus 1593 ~K~~gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~ 1670 (2602)
||.+|++| +||+++++++++.+.+... ..+.+...+.++...++. ....+..+++++.+++++.+.|.
T Consensus 193 SK~~g~~G~R~G~i~~~~~~~~~l~~~~~---------~~~~s~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~l~~~L~ 262 (330)
T TIGR01140 193 TKFFGLAGLRLGFVVAHPALLARLREALG---------PWTVNGPARAAGRAALAD-TAWQAATRARLAAERARLAALLA 262 (330)
T ss_pred chhhcCchhhhhheeCCHHHHHHHHhcCC---------CCCchHHHHHHHHHHHhc-hHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988778 6999999877666654321 123444555555555542 12346677888999999999998
Q ss_pred hcCCcEEEeCCCCCCCCceEEEEEecCCcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCC
Q psy15216 1671 ESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGR 1748 (2602)
Q Consensus 1671 ~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~ 1748 (2602)
+ .+.+.+.+ +...++++...+..++.+.| +||.+.+|..|... ..+++|++++.
T Consensus 263 ~-~~~~~~~~------~~~~f~~~~~~~~~~l~~~l~~~gi~v~pg~~f~~~-----------------~~~~iRi~~~~ 318 (330)
T TIGR01140 263 R-LGGLEVVG------GTALFLLVRTPDAAALHEALARRGILIRDFDNFPGL-----------------DPRYLRFALPT 318 (330)
T ss_pred h-CCCceECC------CCCeEEEEEcCCHHHHHHHHHHCCEEEEECCCCCCC-----------------CCCEEEEEecC
Confidence 7 55455432 12233445544556777666 89999999887321 12789999983
Q ss_pred CCCHHHHHHHHHHHH
Q psy15216 1749 FTTEKEIDFTIKLLK 1763 (2602)
Q Consensus 1749 ~~t~edid~li~~L~ 1763 (2602)
..++ ++++.+|+
T Consensus 319 --~~~~-~~~~~~l~ 330 (330)
T TIGR01140 319 --DEEN-DRLEEALA 330 (330)
T ss_pred --HHHH-HHHHHhhC
Confidence 3345 88888764
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella. |
| >PRK09275 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.8e-18 Score=222.89 Aligned_cols=294 Identities=13% Similarity=0.098 Sum_probs=190.0
Q ss_pred CcEEEeCCHHHHHHHHHHhccc-ccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCC--CCccChHHHHhhccC
Q psy15216 59 REIIWTSGATESNNLAIKGAAH-FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICS 135 (2602)
Q Consensus 59 ~~Iv~t~g~T~al~~~~~~l~~-~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~ld~e~l~~~i~~ 135 (2602)
++|++|+|+++|+..++.++.. ..++|||+|++++|.|+.+...+... ..|++++.++.++ ++.+|++++++++++
T Consensus 162 ~~I~vT~Ga~~al~~~~~aL~~~~ll~pGD~Vlv~~P~y~~Y~~~~~l~-g~~~~~v~v~~~~~~~f~~d~~~l~~~~~~ 240 (527)
T PRK09275 162 FDLFAVEGGTAAMCYIFDSLKENGLLKAGDKIALMTPIFTPYLEIPELP-RYDLEVVHINADEENEWQYPDSELEKLRDP 240 (527)
T ss_pred CeEEEeCCHHHHHHHHHHHHhhhhcCCCCCEEEEeCCChHHHHHHHHHc-CCCeEEEEeecCcccCCCCCHHHHHhhcCC
Confidence 3899999999999999987310 01389999999999999987776654 3355666666543 478999999999999
Q ss_pred CceEEEEecccCccccccc---HHHHHHHHHh--cCCEEEEecccccccc-cccCCC-C-CccEEEeccccccCCCC--c
Q psy15216 136 DTILVSVMLVNNEIGVIQP---ILEIGELCRS--KGVIFHCDAAQAVGKI-DINIQN-Y-KVDLMSFSAHKIYGPKG--I 205 (2602)
Q Consensus 136 ~tklv~i~~~~npTG~~~~---l~~I~~la~~--~g~~livD~a~a~g~~-~~dl~~-~-~~D~~~~S~~K~~Gp~G--~ 205 (2602)
++|++++++||||||.+++ +++|+++|++ ++++||+|++|..-.. ...+.. . ..-+++.|+||.||++| +
T Consensus 241 ~tkai~l~nP~NPTG~v~s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~~~s~~~~~~~~~I~v~SfSK~f~mtG~Rl 320 (527)
T PRK09275 241 SIKALFLVNPSNPPSVAMSDESLEKIADIVNEKRPDLMIITDDVYGTFVDDFRSLFAVLPYNTILVYSFSKYFGATGWRL 320 (527)
T ss_pred CCCEEEEeCCcCCcCCCCCHHHHHHHHHHHHhcCCCcEEEECCCChhhcccccCHHHhCCCCEEEEeehhhhccCcHhHH
Confidence 9999999999999999999 6667888854 5999999999853211 111111 1 23478889999999999 8
Q ss_pred EEEEEecC-----CCCccc--------ceecCC------------------CccccccccCcchhHHH-H---HHHHHHH
Q psy15216 206 GALYIRRN-----PRTRIE--------AQIHGG------------------GHEYGLRSGTLATHQIV-G---MGEAFRL 250 (2602)
Q Consensus 206 G~l~~~~~-----~~~~l~--------~~~~g~------------------~~~~~~~~gt~~~~~~~-a---l~~al~~ 250 (2602)
||++++++ +++.+. ..+..- ........|.+.+.+.. + +.++++.
T Consensus 321 G~i~~~~~~v~~~~i~~l~~~~~~~~~~ry~~~~~~p~~~~fidrlvad~~~v~~~~t~~~s~p~Q~a~al~~~~all~~ 400 (527)
T PRK09275 321 GVIALHEDNVFDKLIAKLPEEKKKELDKRYSSLTTDPEKLKFIDRLVADSRQVALNHTAGLSTPQQVQMALFSLFALLDE 400 (527)
T ss_pred hhhhcCchhHHHHHHHhccHHHHHHHHhhhhhccCCcchhhhHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhC
Confidence 99999876 333231 000000 00011112333333332 2 2233443
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc-----------------cChhHHHHHh---
Q psy15216 251 ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-----------------IEGESLLMAI--- 310 (2602)
Q Consensus 251 ~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~L--- 310 (2602)
...+.++..+.++++++.+.+.|.- .+... ++.. ...+.+.++. .+..+++.+|
T Consensus 401 ~~~~~~~~~~~~~~Rr~~l~~~Lg~---~~~~~-~p~g--~fY~~~di~~~~~~~~g~~f~~~l~~~~~~~~f~~~Ll~e 474 (527)
T PRK09275 401 EDAYKKAMKDIIRRRYKALYEGLGL---PEPED-PNNA--AYYTLIDLEEWAEKNYGKEFADYLKKNYSPVDLLFRLAEE 474 (527)
T ss_pred chHHHHHHHHHHHHHHHHHHHHcCC---CCcCC-CCCe--eEEEEEEhHHhhhhccCchhhhhhhccCCHHHHHHHHHhc
Confidence 3345667777888888888777721 11111 1111 1111111111 1345566666
Q ss_pred CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhhhhhhhhhHhhh
Q psy15216 311 KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKEFFMSYSEKVL 380 (2602)
Q Consensus 311 ~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~~~~~~y~~~~~ 380 (2602)
.+|.+.||..|..+ ++++|||+.. .+++++..+.++|++. .+.|.+++.
T Consensus 475 ~gV~v~PG~~Fg~~------------------~~~vRis~a~-~~~~~~~~~~~rl~~~--l~~y~~~~~ 523 (527)
T PRK09275 475 TGVVLLPGGGFGGP------------------EWSVRVSLAN-LNEEDYAKIGKAIRKL--LDEYYEEYK 523 (527)
T ss_pred CCEEEeCchhhCCC------------------CCeEEEEEec-CCHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 69999999887542 3789999962 4778999999999963 466666553
|
|
| >PRK08861 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.2e-19 Score=223.44 Aligned_cols=308 Identities=12% Similarity=0.086 Sum_probs=205.2
Q ss_pred cchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHHH-HHhCCc
Q psy15216 33 HIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDGF 111 (2602)
Q Consensus 33 ~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~-~~~~G~ 111 (2602)
+.|++...+..+.+++++|++.|. +++++++|+++|+++++.++. ++||+|+++.+.|++....+.. ..+.|+
T Consensus 45 ~~Y~R~~npt~~~Le~~lA~leg~--e~ivvt~gg~~Ai~~~l~all----~~Gd~Il~~~~~y~~~~~~~~~~~~~~gi 118 (388)
T PRK08861 45 YDYTRSGNPNRGLLEQTLSELESG--KGAVVTNCGTSALNLWVSALL----GPDDLIVAPHDCYGGTYRLFNTRANKGDF 118 (388)
T ss_pred ccccCCCCchHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHHHHc----CCCCEEEEcCCchHHHHHHHHHHHhcCCe
Confidence 455666667789999999999995 599999999999999999987 8999999999999986666544 355688
Q ss_pred EEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHhcCCEEEEecccccccccccCCCCCccE
Q psy15216 112 RVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDL 191 (2602)
Q Consensus 112 ~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~~g~~livD~a~a~g~~~~dl~~~~~D~ 191 (2602)
++.+++. .|+++++++++++|++|++++|+||||.+.|+++|.++|+++|+++++|++++.+....++ ++++|+
T Consensus 119 ~v~~vd~-----~d~e~l~~~i~~~tklV~lesP~NPtG~v~dl~~I~~la~~~gi~vIvDea~~~~~~~~pl-~~GaDi 192 (388)
T PRK08861 119 KVQFVDQ-----SDAAALDAALAKKPKLILLETPSNPLVRVVDIAELCQKAKAVGALVAVDNTFLTPVLQKPL-ELGADF 192 (388)
T ss_pred EEEEECC-----CCHHHHHHhcCcCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCccccccCCCc-ccCCCE
Confidence 8888863 4899999999999999999999999999999999999999999999999999887644333 468999
Q ss_pred EEecccccc-CCCC--cEEEEEec-CCCCcccceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy15216 192 MSFSAHKIY-GPKG--IGALYIRR-NPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQK 267 (2602)
Q Consensus 192 ~~~S~~K~~-Gp~G--~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~ 267 (2602)
+++|+||++ |+.+ .|+++.++ ++.++++... .......+....+.+..+|+- +.-+.+++.+.+.
T Consensus 193 vv~S~tK~l~G~~d~~gG~i~~~~~~~~~~~~~~~-------~~~G~~~~p~~a~l~~rgl~T----l~lR~~~~~~~a~ 261 (388)
T PRK08861 193 VIHSTTKYINGHSDVIGGVLITKTKEHAEELAWWG-------NCIGATGTPFDSYMTLRGIRT----LGARMRVHEESAQ 261 (388)
T ss_pred EEeecceeccCCCcceeEEEEecHHHHHHHHHHHH-------hccCCCCChHHHHHHHhcCCC----HHHHHHHHHHHHH
Confidence 999999955 5554 57776654 3333333211 111223344444434344443 3344455556666
Q ss_pred HHHHHHhhccCceE-EeCC--CCC-----------CCCceEEEEEcc--cChhHHHHHh--CCeEEcccccCCC---C--
Q psy15216 268 RLYNGLMESIEEIY-INGD--MNN-----------RIPHNLNISFNF--IEGESLLMAI--KDIAVSSGSACTS---A-- 324 (2602)
Q Consensus 268 ~l~~~L~~~~~g~~-l~~~--~~~-----------~~~~~~~~~~~~--~~~~~~~~~L--~gI~v~~g~~~~~---~-- 324 (2602)
.+.+.|++ .|.+. ++-| +++ .....+.|.+.+ .....+++.| ..+.++-|...+- +
T Consensus 262 ~~a~~L~~-~p~v~~V~yP~l~~~p~~~~~~~~~~g~gg~~sf~~~~~~~~~~~f~~~l~l~~~~~s~G~~~sl~~~p~~ 340 (388)
T PRK08861 262 QILAYLQT-QSLVGTIYHPSLPEHPGHEIAKKQQSGFGSMLSFEFAGSFEQLKVFVKALALFSLAESLGGVESLICHPAS 340 (388)
T ss_pred HHHHHHHh-CCCeeEEECCCCCCCchHHHHHHhCCCCCceEEEEeCCCHHHHHHHHhcCCcceEccCCCCCcceeeCCCc
Confidence 66666665 45543 2211 111 112234444432 1133566666 3445554432221 0
Q ss_pred --CC-ChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 325 --SL-EPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 325 --~~-~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
|. .+.-.....|+. ++.||+|+|..+.++-++.+.++|+.
T Consensus 341 ~~h~~~~~~~~~~~gi~----~~liRlsvGlE~~~dli~Dl~~al~~ 383 (388)
T PRK08861 341 MTHRAMGEEALAEAGVS----QQLLRLSVGLEDAQDLIADLDQAFAK 383 (388)
T ss_pred ccccccCHHHHHhcCCC----CCeEEEEeCcCCHHHHHHHHHHHHHH
Confidence 00 011223456665 37899999987666555566666653
|
|
| >PRK14808 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.7e-18 Score=217.99 Aligned_cols=294 Identities=17% Similarity=0.113 Sum_probs=209.2
Q ss_pred CCCCCCCHHHHHHHHHHHhhc--cCCCCCccchhHHHHHHHHHHHHHHHHHHhC---CCCCcEEEeCCHHHHHHHHHHhh
Q psy15216 1400 DATTPIDPRVVDKMIPYLRVQ--FGNPASRNHIYGWTAEKAIEKARNEVAQLIY---ADPREIIWTSGATESNNLAIKGA 1474 (2602)
Q Consensus 1400 ~~~~~~~~~v~eal~~~l~~~--~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g---~~~~~iv~t~gaT~al~~al~~l 1474 (2602)
.+..+.|+.+++++.+.+... ..+|.. ...++|++++++++ .++++|++|+|+++++..++.++
T Consensus 28 ~~~~~~p~~~~~~~~~~~~~~~~~~Y~~~-----------~~~~Lr~aia~~~~~~~~~~~~i~it~Ga~~~i~~~~~~~ 96 (335)
T PRK14808 28 ENPFPFPEDLVDEVFRRLNSDTLRIYYDS-----------PDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVMMLMF 96 (335)
T ss_pred CCCCCCCHHHHHHHHHHhhhhhhhcCCCC-----------ChHHHHHHHHHHhCCCCCCcceEEEcCCHHHHHHHHHHHh
Confidence 345678889999998876431 112322 25678999999998 78899999999999999998765
Q ss_pred hhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccCCceEEEEeccccccccccChHHH
Q psy15216 1475 AHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEI 1554 (2602)
Q Consensus 1475 ~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I 1554 (2602)
|+|++++|+|+.+...++.+ |++++.++.+.++.++... + .+++++++++||||||.+++.+++
T Consensus 97 --------d~v~v~~P~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~~~----~-~~~~~i~i~nP~NPTG~~~s~~~l 160 (335)
T PRK14808 97 --------DRSVFFPPTYSCYRIFAKAV---GAKFLEVPLTKDLRIPEVN----V-GEGDVVFIPNPNNPTGHVFEREEI 160 (335)
T ss_pred --------CcEEECCCCHHHHHHHHHHc---CCeEEEecCCCcCCCChhH----c-cCCCEEEEeCCCCCCCCCcCHHHH
Confidence 46999999999988877776 9999999988776655332 2 357899999999999999999999
Q ss_pred HHHhhhcCCEEEEecccccC--ccccc-CCCCCccEEEEccccccCCCc--eEEEEEecCCCCccccccccCCccccCCC
Q psy15216 1555 GELCRSKGVIFHCDAAQAVG--KIDIN-IQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRS 1629 (2602)
Q Consensus 1555 ~~ia~~~gi~vivD~a~~~g--~~~~~-l~~~~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~ 1629 (2602)
.+++ ++++++|+|+++..- ....+ +.....-+++.|++|.+|++| +||+++++++++.+..... .
T Consensus 161 ~~l~-~~~~~ii~DE~Y~~f~~~~~~~~~~~~~~vi~~~S~SK~~~l~GlRvG~~v~~~~~~~~l~~~~~---------~ 230 (335)
T PRK14808 161 ERIL-KTGAFVALDEAYYEFHGESYVDLLKKYENLAVIRTFSKAFSLAAQRIGYVVSSEKFIDAYNRVRL---------P 230 (335)
T ss_pred HHHH-hcCCEEEEECchhhhcCCchHHHHHhCCCEEEEEechhhccCcccceEEEEeCHHHHHHHHHhcC---------C
Confidence 9998 589999999997531 11111 112223477789999988888 8999999877766643321 1
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecCCcHHHHHhc--C
Q psy15216 1630 GTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI--K 1707 (2602)
Q Consensus 1630 gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~ 1707 (2602)
.+.+.+...++..++.. ...+.+..+++.+.++++.+.|.+ .|+.+..+ . .....+.++..+..++...| +
T Consensus 231 ~~~~~~~q~a~~~~l~~-~~~~~~~~~~~~~~r~~l~~~L~~--~g~~~~~~-~---g~f~~~~l~~~~~~~~~~~l~~~ 303 (335)
T PRK14808 231 FNVSYVSQMFAKVALDH-REIFEERTKFIVEERERMKSALRE--MGYRITDS-R---GNFVFIFMEKEEKERLLEHLRAK 303 (335)
T ss_pred CCCCHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHHHHH--CCCEECCC-C---CeEEEEeCCCccHHHHHHHHHHC
Confidence 23344445555566653 223455666777778888898887 36665432 1 12222333333445666655 7
Q ss_pred CEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1708 DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1708 gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
||.++. | . +++|||++ +.+++++++++|++
T Consensus 304 Gi~V~~---~--~-------------------~~~Risi~---~~~~~~~~~~~l~~ 333 (335)
T PRK14808 304 NIAVRS---F--R-------------------EGVRITIG---KREENDMILKELEV 333 (335)
T ss_pred CeEEEE---C--C-------------------CCeEEecC---CHHHHHHHHHHHHh
Confidence 999972 2 1 46999998 78999999999985
|
|
| >PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions | Back alignment and domain information |
|---|
Probab=99.81 E-value=8e-19 Score=225.47 Aligned_cols=333 Identities=19% Similarity=0.185 Sum_probs=222.4
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCEEE
Q psy15216 11 PRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHII 90 (2602)
Q Consensus 11 ~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vl 90 (2602)
.+.++++.+.+.+.+.... ....+++++.+++++|.+ +++.++|+|.||.+++.++. +++||+|+
T Consensus 5 ~e~~~~v~~~l~s~~~~~~----------g~~~~~fE~~~a~~~g~~--~~~~~~sgt~Al~~al~~l~---~~~gdeVi 69 (363)
T PF01041_consen 5 EEEIDAVLEVLRSGWLSTY----------GPYVEEFEKEFAEYFGVK--YAVAVSSGTSALHLALRALG---LGPGDEVI 69 (363)
T ss_dssp HHHHHHHHHHHHHTCCSSS----------SHHHHHHHHHHHHHHTSS--EEEEESSHHHHHHHHHHHTT---GGTTSEEE
T ss_pred HHHHHHHHHHHHhCCccCC----------CHHHHHHHHHHHHHhCCC--eEEEeCChhHHHHHHHHhcC---CCcCceEe
Confidence 3556778888876432221 136789999999999965 89999999999999999998 78999999
Q ss_pred EcCCCCcccHHHHHHHHhCCcEEEEeccC-CCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHhcCCEE
Q psy15216 91 TVQTEHKSVLDSIRKLENDGFRVTYLKPK-NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIF 169 (2602)
Q Consensus 91 v~~~~~~s~~~~~~~~~~~G~~v~~v~~~-~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~~g~~l 169 (2602)
+|..+|+++..++..+ |+++++++++ .++.+|+++++++++++|++|+++|. .|...|+++|.++|+++|+++
T Consensus 70 ~p~~t~~~~~~ai~~~---G~~pv~~Di~~~~~~id~~~~~~~i~~~t~ai~~~h~---~G~~~d~~~i~~~~~~~~i~l 143 (363)
T PF01041_consen 70 VPAYTFPATASAILWA---GAEPVFVDIDPETLNIDPEALEKAITPKTKAILVVHL---FGNPADMDAIRAIARKHGIPL 143 (363)
T ss_dssp EESSS-THHHHHHHHT---T-EEEEE-BETTTSSB-HHHHHHHHHTTEEEEEEE-G---GGB---HHHHHHHHHHTT-EE
T ss_pred cCCCcchHHHHHHHHh---ccEEEEEeccCCcCCcCHHHHHHHhccCccEEEEecC---CCCcccHHHHHHHHHHcCCcE
Confidence 9999999999998887 9999999999 47899999999999999999999998 899999999999999999999
Q ss_pred EEeccccccccccc--CCCCCccEEEeccc--cccCCCCcEEEEEecC-CCCcccceecCCCcc---ccccccC-cch-h
Q psy15216 170 HCDAAQAVGKIDIN--IQNYKVDLMSFSAH--KIYGPKGIGALYIRRN-PRTRIEAQIHGGGHE---YGLRSGT-LAT-H 239 (2602)
Q Consensus 170 ivD~a~a~g~~~~d--l~~~~~D~~~~S~~--K~~Gp~G~G~l~~~~~-~~~~l~~~~~g~~~~---~~~~~gt-~~~-~ 239 (2602)
|.|++|+.|...-. +-.+ -|+.++||| |.+.....|+++.+++ +.++++.+...+... ..+.... +.+ .
T Consensus 144 IeD~a~a~g~~~~g~~~G~~-gd~~~fSf~~~K~i~~geGG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~n~ 222 (363)
T PF01041_consen 144 IEDAAQAFGARYKGRPVGSF-GDIAIFSFHPTKIITTGEGGAVVTNDPELAERARALRNHGRSRDAFRRYRHELPPGYNF 222 (363)
T ss_dssp EEE-TTTTT-EETTEETTSS-SSEEEEESSTTSSS-SSS-EEEEESTHHHHHHHHHHTBTTEETSECSTTEESSSS--B-
T ss_pred EEccccccCceeCCEeccCC-CCceEecCCCCCCCcCCCCeeEEecHHHHHHHhhhhhccCcCccccccccccccCCccc
Confidence 99999999874321 1122 388888886 6553222488888753 344444333222111 1111100 000 1
Q ss_pred HHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCC---CCCceEEEEEccc---ChhHHHHHh--
Q psy15216 240 QIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNN---RIPHNLNISFNFI---EGESLLMAI-- 310 (2602)
Q Consensus 240 ~~~al~~al~~~-~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~---~~~~~~~~~~~~~---~~~~~~~~L-- 310 (2602)
.+.-+.+|+-.. ...+++..++.+++++++.+.|.. .+++.....+.. ..++.+.+.++.. +.+++.+.|
T Consensus 223 rm~~~~AAigl~QL~~L~~~~~~R~~~a~~y~~~L~~-~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~rd~l~~~L~~ 301 (363)
T PF01041_consen 223 RMSELQAAIGLAQLKRLDEIIARRRENAQRYREALAG-IPGIKPPPIPDGAERSSYYRFPIRLPDEALADRDELVEALRA 301 (363)
T ss_dssp B-BHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTT-GTTEEEEGCGTTTEEBCESSEEEEETCCGCSTHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhc-CCCcccccccccccccccccccccccccccchHHHHHHHHHH
Confidence 111222333322 245788899999999999999988 788866543322 2334455666643 567888888
Q ss_pred CCeEEcccccCCCCCCChHHHHH------HcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHH
Q psy15216 311 KDIAVSSGSACTSASLEPSYVLR------ALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK 367 (2602)
Q Consensus 311 ~gI~v~~g~~~~~~~~~~~~~~~------~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~ 367 (2602)
+||.+++.. ..+-+.++.+... .++..+......|.+++++..+.+|+++++++|+
T Consensus 302 ~GI~~~~~~-~~pl~~~~~~~~~~~~~~~~~P~ae~l~~r~l~LP~~~~lt~edv~~I~~~ir 363 (363)
T PF01041_consen 302 RGIETRPHY-PKPLHRQPVYRSYPYYAPGDLPNAERLSQRLLSLPIHPRLTEEDVDYIAEAIR 363 (363)
T ss_dssp TTBEEBCST-SSCGGGSGGGTTGEEEETSSSHHHHHHHHHEEEEEHSTTSCHHHHHHHHHHHH
T ss_pred CCCcccccc-cCchhhhHHHHhcCccccCCCHHHHHHHhCeEECcCCCCCCHHHHHHHhhccC
Confidence 799888654 1222222222111 0111222334679999999999999999999885
|
The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A .... |
| >PRK06234 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.5e-18 Score=222.22 Aligned_cols=307 Identities=13% Similarity=0.134 Sum_probs=208.9
Q ss_pred hhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHHH-HHhCCcEE
Q psy15216 35 YGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDGFRV 113 (2602)
Q Consensus 35 ~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~-~~~~G~~v 113 (2602)
+++...+...++++++|+++|.+ ++++++|++.|+..++.++. ++||+|+++.+.|+++...+.. +...|+++
T Consensus 58 Y~r~~~p~~~~Le~~iA~~~g~~--~~l~~~sG~~Ai~~al~~ll----~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v 131 (400)
T PRK06234 58 YSRLGNPTSTEVENKLALLEGGE--AAVVAASGMGAISSSLWSAL----KAGDHVVASDTLYGCTFALLNHGLTRYGVEV 131 (400)
T ss_pred ccCCCCccHHHHHHHHHHHhCCC--cEEEEcCHHHHHHHHHHHHh----CCCCEEEEecCccchHHHHHHHHHhhCCeEE
Confidence 34334456789999999999964 67888999999999988877 8999999999999987665533 46679999
Q ss_pred EEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHhc--CCEEEEecccccccccccCCCCCccE
Q psy15216 114 TYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSK--GVIFHCDAAQAVGKIDINIQNYKVDL 191 (2602)
Q Consensus 114 ~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~~--g~~livD~a~a~g~~~~dl~~~~~D~ 191 (2602)
++++.. |+++++++++++|++|++++|+||||.+.|+++|.++|+++ |+++++|++++.+.....+ ..++|+
T Consensus 132 ~~vd~~-----d~e~l~~~i~~~tklI~iesP~NPtG~v~dl~~I~~la~~~~~~i~livDea~~~~~~~~~l-~~g~Di 205 (400)
T PRK06234 132 TFVDTS-----NLEEVRNALKANTKVVYLETPANPTLKVTDIKAISNIAHENNKECLVFVDNTFCTPYIQRPL-QLGADV 205 (400)
T ss_pred EEECCC-----CHHHHHHHhccCCeEEEEECCCCCCCCcCCHHHHHHHHHhcCCCCEEEEECCCCchhcCCch-hhCCcE
Confidence 999753 79999999999999999999999999999999999999997 9999999999877543322 357899
Q ss_pred EEeccccccCCCC---cEEEEEecCCCCcccceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy15216 192 MSFSAHKIYGPKG---IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKR 268 (2602)
Q Consensus 192 ~~~S~~K~~Gp~G---~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~ 268 (2602)
+++|++|+++++| .|++++++++++.++.... ........+....+.+..+++ .+..+.++..+++.+
T Consensus 206 vv~S~sK~l~g~g~~~gG~v~~~~~~~~~l~~~~~-----~~~~g~~l~p~~a~l~~~~l~----tl~~r~~~~~~na~~ 276 (400)
T PRK06234 206 VVHSATKYLNGHGDVIAGFVVGKEEFINQVKLFGI-----KDMTGSVIGPFEAFLIIRGMK----TLQIRMEKHCKNAMK 276 (400)
T ss_pred EEeeccccccCCCCceeEEEEecHHHHHHHHHHHH-----HHhcCCCCCHHHHHHHHhccC----cHHHHHHHHHHHHHH
Confidence 9999999887766 5999998876665542110 001112233332222223333 234555566677777
Q ss_pred HHHHHhhccCceE-EeCCC--CC-----------CCCceEEEEEccc--ChhHHHHHh--CCeEEcccccCCCC------
Q psy15216 269 LYNGLMESIEEIY-INGDM--NN-----------RIPHNLNISFNFI--EGESLLMAI--KDIAVSSGSACTSA------ 324 (2602)
Q Consensus 269 l~~~L~~~~~g~~-l~~~~--~~-----------~~~~~~~~~~~~~--~~~~~~~~L--~gI~v~~g~~~~~~------ 324 (2602)
+.+.|++ .|.+. ++-|. ++ ....++.|.+.+. ...++++.| .++..+-|...+--
T Consensus 277 ~a~~L~~-~~~V~~V~~p~l~~~~~~~~~~~~~~~~g~l~s~~l~~~~~~~~~f~~~l~~~~~~~s~G~~~sl~~~p~~~ 355 (400)
T PRK06234 277 VAKFLES-HPAVEKVYYPGLESFEYYELAKKQMSLPGAMISFELKGGVEEGKVVMNNVKLATLAVSLGDAETLIQHPASM 355 (400)
T ss_pred HHHHHHc-CCCeeEEECCCCCCCCcHHHHHHhCCCCCceEEEEecCcHHHHHHHHHhCCcceEeccCCCCCceecCCccC
Confidence 7887776 45542 22111 11 1233445555421 234677777 46666666433211
Q ss_pred -C-CChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHH
Q psy15216 325 -S-LEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK 367 (2602)
Q Consensus 325 -~-~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~ 367 (2602)
| ..+.......|++ ++.||+|+|..+.++-++.+.++|+
T Consensus 356 ~~~~~~~~~~~~~gi~----~~l~R~svGlE~~~dl~~dl~~al~ 396 (400)
T PRK06234 356 THSPYTAEERKEAGIS----DGLVRLSVGLEDVDDIIADLKQALD 396 (400)
T ss_pred CCCCCCHHHHHhcCCC----CCeEEEEeCCCCHHHHHHHHHHHHH
Confidence 0 1112223456665 3789999998766665666666665
|
|
| >PRK09064 5-aminolevulinate synthase; Validated | Back alignment and domain information |
|---|
Probab=99.81 E-value=5e-18 Score=222.96 Aligned_cols=318 Identities=18% Similarity=0.166 Sum_probs=216.5
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCC
Q psy15216 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK 87 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd 87 (2602)
..+|.+++++.+.+......++ .+...+...+...++++++|+++|. ++.+++ +++++|+..++..+.. ..+++
T Consensus 60 ~~~p~v~~a~~~~~~~~~~~~~--~s~~~~g~~~~~~~l~~~la~~~g~-~~~~~~-~sG~~an~~ai~~l~~--~~~~~ 133 (407)
T PRK09064 60 GQHPKVIEAMIEALDRCGAGAG--GTRNISGTNHYHVELERELADLHGK-EAALVF-TSGYVSNDATLSTLAK--LIPDC 133 (407)
T ss_pred CCCHHHHHHHHHHHHHcCCCCC--CcCcCccCHHHHHHHHHHHHHHhCC-CcEEEE-CcHHHHHHHHHHHHhC--CCCCC
Confidence 4477899999998876322221 1121222355678999999999995 344544 5556787777776651 14788
Q ss_pred EEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhcc----CCceEEEEecccCcccccccHHHHHHHHH
Q psy15216 88 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKIC----SDTILVSVMLVNNEIGVIQPILEIGELCR 163 (2602)
Q Consensus 88 ~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~----~~tklv~i~~~~npTG~~~~l~~I~~la~ 163 (2602)
.|+.....|.+....+... ++++..++. .|+++++++++ +++++|++++++|++|.+.|+++|.++|+
T Consensus 134 ~i~~~~~~h~s~~~~~~~~---~~~~~~~~~-----~d~~~le~~l~~~~~~~~~~v~~~~v~s~~G~~~~l~~i~~l~~ 205 (407)
T PRK09064 134 VIFSDELNHASMIEGIRRS---RCEKHIFRH-----NDVAHLEELLAAADPDRPKLIAFESVYSMDGDIAPIAEICDLAD 205 (407)
T ss_pred EEEEeCcchHHHHHHHHHc---CCcEEEECC-----CCHHHHHHHHHhccCCCCeEEEEeCCCCCCccccCHHHHHHHHH
Confidence 8888878888876666544 677666553 37788887775 57899999999999999999999999999
Q ss_pred hcCCEEEEecccccccc-c--------ccCCCCCccEEEeccccccCCCCcEEEEEecCCCCcccceecCCCcccccccc
Q psy15216 164 SKGVIFHCDAAQAVGKI-D--------INIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSG 234 (2602)
Q Consensus 164 ~~g~~livD~a~a~g~~-~--------~dl~~~~~D~~~~S~~K~~Gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~g 234 (2602)
+||+++++|++|+.|.. + .++. ..+|+++.|++|.+|+.| ||+++++++++.+.....+ ..+ ..
T Consensus 206 ~~~~~livDEa~~~G~~g~~g~g~~~~~~~~-~~~div~~t~sKa~g~~G-G~~~~~~~~~~~l~~~~~~----~~~-t~ 278 (407)
T PRK09064 206 KYNALTYLDEVHAVGMYGPRGGGIAERDGLM-DRIDIIEGTLAKAFGVMG-GYIAGSAALVDAVRSYAPG----FIF-TT 278 (407)
T ss_pred HcCCEEEEECCCcccccCCCCCChHHhcCCC-CCCeEEEEecchhhhccC-ceEecCHHHHHHHHHhCcc----ccc-cC
Confidence 99999999999985532 1 1111 135899999999999887 9998888766655432211 111 22
Q ss_pred CcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc-cChhHHHHHh---
Q psy15216 235 TLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGESLLMAI--- 310 (2602)
Q Consensus 235 t~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~L--- 310 (2602)
+.+....+++.+++++.... ...+++..++++++.+.|.+ .|+.+..+. ..++.+.++. ....++.+.|
T Consensus 279 ~~~~~~~~aa~~al~~~~~~-~~~~~~~~~~~~~l~~~L~~--~g~~~~~~~----~~iv~i~~~~~~~~~~l~~~L~~~ 351 (407)
T PRK09064 279 SLPPAIAAAALASIRHLKES-NEERERHQERAAKLKAALDA--AGIPVMPNE----SHIVPVMVGDPEKCKKASDMLLEE 351 (407)
T ss_pred cCCHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHH--cCCCCCCCC----CCEEEEEeCCHHHHHHHHHHHHHh
Confidence 34445556666788765543 34567888999999999987 366555332 1233333332 2344566655
Q ss_pred CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 311 KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 311 ~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
+||.+++......+ ...+++||+++.++|.+|+++++++|++.
T Consensus 352 ~gi~v~~~~~p~~~----------------~~~~~lRis~~~~~t~edi~~l~~~l~~~ 394 (407)
T PRK09064 352 HGIYVQPINYPTVP----------------RGTERLRITPTPFHTDEMIDHLVEALVEV 394 (407)
T ss_pred CCEEEeeECCCCCC----------------CCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 48999864321110 11257999999999999999999999964
|
|
| >TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.3e-18 Score=221.81 Aligned_cols=307 Identities=14% Similarity=0.068 Sum_probs=205.3
Q ss_pred cchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHHH-HHhCCc
Q psy15216 33 HIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDGF 111 (2602)
Q Consensus 33 ~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~-~~~~G~ 111 (2602)
+.|++...+..+.+++.+|++.|.+ ++++++|+++|+..++.++. ++||+|+++++.|++....+.. +.+.|+
T Consensus 42 ~~Y~r~gnPt~~~lE~~lA~l~g~~--~~~~~~sG~~Ai~~al~all----~~GD~Vl~~~~~y~~t~~~~~~~~~~~gi 115 (377)
T TIGR01324 42 LTYGRRGTLTHFALQDAMCELEGGA--GCYLYPSGLAAVTNSILAFV----KAGDHVLMVDSAYEPTRYFCDIVLKRMGV 115 (377)
T ss_pred CcccCCCCccHHHHHHHHHHHhCCC--cEEEECcHHHHHHHHHHHhc----CCCCEEEEcCCCcHHHHHHHHHHHHhcCc
Confidence 3344444456788999999999964 78899999999999999987 8999999999999887665543 356689
Q ss_pred EEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHhcCCEEEEecccccccccccCCCCCccE
Q psy15216 112 RVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDL 191 (2602)
Q Consensus 112 ~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~~g~~livD~a~a~g~~~~dl~~~~~D~ 191 (2602)
++..++.. +.++++++++++||+|++++|+||+|.+.|+++|+++||++|+++++|++|+.|... ...++++|+
T Consensus 116 ~v~~~d~~-----~~e~l~~~i~~~tklV~lesp~Np~g~~~dl~~I~~la~~~g~~livD~t~a~g~~~-~pl~~gaDi 189 (377)
T TIGR01324 116 DITYYDPL-----IGEDIATLIQPNTKVLFLEAPSSITFEIQDIPAIAKAARNPGIVIMIDNTWAAGLLF-KPLEHGVDI 189 (377)
T ss_pred EEEEECCC-----CHHHHHHhcCCCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcccccc-CccccCceE
Confidence 98888643 238899999999999999999999999999999999999999999999999998763 334578999
Q ss_pred EEeccccccC-CCC--cEEEEEecCCCCcccceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy15216 192 MSFSAHKIYG-PKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKR 268 (2602)
Q Consensus 192 ~~~S~~K~~G-p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~ 268 (2602)
++.|++|++| +.+ .|+++.+++.++.+.... .....+.+....+.+..+++.+ ..+.++..+++..
T Consensus 190 vv~S~tK~l~G~~d~~gG~v~~~~~~~~~l~~~~-------~~~G~~l~p~~a~~~~rgl~tl----~~R~~~~~~~a~~ 258 (377)
T TIGR01324 190 SIQAGTKYLVGHSDIMIGTVVANARTWDQLREHS-------YLMGQMVDADDAYTTLRGLRTL----GVRLKQHQESSLA 258 (377)
T ss_pred EEecCceeccCCCCceEEEEEeCHHHHHHHHHHH-------HHhCCCCCHHHHHHHHhhhhhH----HHHHHHHHHHHHH
Confidence 9999999665 433 588888776555443211 1112234444444444555533 3334455555555
Q ss_pred HHHHHhhccCce-EEeCCC--CC-----------CCCceEEEEEccc---ChhHHHHHh--CCeEEcccccCCCC---C-
Q psy15216 269 LYNGLMESIEEI-YINGDM--NN-----------RIPHNLNISFNFI---EGESLLMAI--KDIAVSSGSACTSA---S- 325 (2602)
Q Consensus 269 l~~~L~~~~~g~-~l~~~~--~~-----------~~~~~~~~~~~~~---~~~~~~~~L--~gI~v~~g~~~~~~---~- 325 (2602)
+.+.|.+ .|.+ +++-|. +. ....++.|.+.+. ....+++.| .++.++-|...+-- +
T Consensus 259 la~~L~~-~p~v~~v~yp~l~~~p~~~~~~~~~~~~g~~~s~~l~~~~~~~~~~~~~~l~~~~~~~slG~~~sl~~~~~~ 337 (377)
T TIGR01324 259 IAKWLSE-QPEVARVLHPALPSCPGHEFWKRDFSGSSGLFSFVLQRLTQKQVHAFLDHLQLFGLGYSWGGYESLALCNQP 337 (377)
T ss_pred HHHHHHh-CCCcCEEECCCCCCCccHHHHHHhccCCCceEEEEECCCCHHHHHHHHHhCCcceEeccCCCccceeecCCC
Confidence 6666655 3443 222111 11 1234455555431 235677777 46666666433211 1
Q ss_pred CChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHH
Q psy15216 326 LEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK 367 (2602)
Q Consensus 326 ~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~ 367 (2602)
..........++. ++.||+|+|..+.++=++.+.++|+
T Consensus 338 ~~~~~~~~~~~~~----~~liR~svGlE~~~dl~~dl~~al~ 375 (377)
T TIGR01324 338 ELGHRPNIKRNLE----GPLIRVHIGLENVDDLKADLKAGFE 375 (377)
T ss_pred CCCHHHHHhccCC----CCEEEEEeCCCCHHHHHHHHHHHHh
Confidence 0111122334443 3789999998665555555555554
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >TIGR01999 iscU FeS cluster assembly scaffold IscU | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.6e-20 Score=193.95 Aligned_cols=95 Identities=78% Similarity=1.231 Sum_probs=88.1
Q ss_pred hhHhhhhcccCCCCCCCCCCCCCcceeeeeCCCCcccEEEEEEEEcCCCceEeeeeeccccchhHhhHHHHHHHHcCCCh
Q psy15216 375 YSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKTYGCGSAIASSSLVTEWVKGKTL 454 (2602)
Q Consensus 375 y~~~~~~hy~~p~n~g~~~~~~~~~~~~~~~~~~cgd~~~~~~~~~~~~~i~~~~~~~~gc~~~~a~~s~~~~~~~g~~~ 454 (2602)
|++++++||.||+|.|.|++++..+++|+.+||.|||.|+|+|+|+++|+|+|++|+++||++++||+|+++|+++|||+
T Consensus 1 Y~~~il~~~~~p~n~G~l~~~~~~~~~~~~~np~CGD~i~l~l~v~~~~~I~d~~f~~~GC~~s~Asas~~~e~i~Gktl 80 (124)
T TIGR01999 1 YSEKVLDHYENPRNVGSLDKDDKNVGTGLVGAPACGDVMKLQIKVNDDGIIEDAKFKTFGCGSAIASSSLATELIKGKSL 80 (124)
T ss_pred CcHHHHHHHhCCCCCCCCCCCccccceEEeCCCCCccEEEEEEEECCCCeEEEEEEEecCcHHHHHHHHHHHHHHcCCCH
Confidence 89999999999999999998875567889999999999999999975589999999999999999999999999999999
Q ss_pred hhhhhccccchhhhh
Q psy15216 455 DEAMSIKNTDIAEEL 469 (2602)
Q Consensus 455 ~e~~~i~~~~i~~~l 469 (2602)
+|+..|+..++.+.+
T Consensus 81 ~ea~~i~~~~i~~~l 95 (124)
T TIGR01999 81 EEALKIKNTEIAKEL 95 (124)
T ss_pred HHHHhccHHHHHHHc
Confidence 999999987776654
|
This model represents IscU, a homolog of the N-terminal region of NifU, an Fe-S cluster assembly protein found mostly in nitrogen-fixing bacteria. IscU is considered part of the IscSUA-hscAB-fdx system of Fe-S assembly, whereas NifU is found in nitrogenase-containing (nitrogen-fixing) species. A NifU-type protein is also found in Helicobacter and Campylobacter. IscU and NifU are considered scaffold proteins on which Fe-S clusters are assembled before transfer to apoproteins. This model excludes true NifU proteins as in Klebsiella pneumoniae and Anabaena sp. as well as archaeal homologs. It includes largely proteobacterial and eukaryotic forms. |
| >TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.1e-18 Score=223.90 Aligned_cols=315 Identities=15% Similarity=0.138 Sum_probs=217.1
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCC
Q psy15216 1404 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK 1483 (2602)
Q Consensus 1404 ~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd 1483 (2602)
+.++.+.+++.+.++...... +.+........+..++++++++++|.+ +.+++++| ++++..++.++. ++||
T Consensus 47 ~~~~~~~~a~~~~~~~~~~~~--~~~~~~~g~~~l~~~l~~~l~~~~g~~-~~i~~~sG-~~a~~~a~~~~~----~~gd 118 (385)
T TIGR01825 47 ADHPRLKEAAAQAIQQYGVGA--GAVRTIAGTLRLHEELEEKLAKFKKTE-AALVFQSG-FNTNQGVLSALL----RKGD 118 (385)
T ss_pred CCCHHHHHHHHHHHHHcCCCC--CccCcccCCcHHHHHHHHHHHHHhCCC-cEEEECcH-HHHHHHHHHHhC----CCCC
Confidence 467788899988876421111 112122223467788999999999964 45666655 677777777765 8999
Q ss_pred EEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhcc----CCceEEEEeccccccccccChHHHHHHhh
Q psy15216 1484 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKIC----SDTILVSVMLVNNEIGVIQPILEIGELCR 1559 (2602)
Q Consensus 1484 ~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~----~~t~lv~l~~~~n~tG~~~~l~~I~~ia~ 1559 (2602)
+|+++++.|+++...+... |+++..++ .+|++++++.+. +++++|++++++|+||.+.|+++|.++|+
T Consensus 119 ~vi~~~~~~~~~~~~~~~~---g~~~~~~~-----~~d~~~l~~~l~~~~~~~~~~v~~~~v~~~tG~~~~~~~i~~l~~ 190 (385)
T TIGR01825 119 IVLSDELNHASIIDGLRLT---KATKKIYK-----HADMDDLDRVLRENPSYGKKLIVTDGVFSMDGDVAPLPEIVELAE 190 (385)
T ss_pred EEEEEccccHHHHHHHHhc---CCceEEeC-----CCCHHHHHHHHHhhccCCCeEEEEecCCcCCCCccCHHHHHHHHH
Confidence 9999999999987665544 77766653 468888888765 37889999999999999999999999999
Q ss_pred hcCCEEEEecccccCccc---------ccCCCCCccEEEEccccccCCCceEEEEEecCCCCccccccccCCccccCC-C
Q psy15216 1560 SKGVIFHCDAAQAVGKID---------INIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLR-S 1629 (2602)
Q Consensus 1560 ~~gi~vivD~a~~~g~~~---------~~l~~~~~D~~v~S~~K~~gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~-~ 1629 (2602)
+||+++|+|++|+.+... +++. .+.++++.|+||.+|++| ||++.++++++.+.... ..+. .
T Consensus 191 ~~~~~li~De~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~g-G~~~~~~~~~~~~~~~~------~~~~~~ 262 (385)
T TIGR01825 191 RYGAVTYVDDAHGSGVMGEAGRGTVHHFGLE-DKVDIQVGTLSKAIGVVG-GYAAGHKELIEYLKNRA------RPFLFS 262 (385)
T ss_pred HhCCEEEEECcccccCcCCCCCccHhhcCCC-cCCcEEEEeccHHhhcCC-CEEecCHHHHHHHHHhC------cccccc
Confidence 999999999999765432 2332 457899999999888776 89988876666553221 0111 2
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEec-CCcHHHHHhc--
Q psy15216 1630 GTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGESLLMAI-- 1706 (2602)
Q Consensus 1630 gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~L-- 1706 (2602)
++.+...++++.++++..... .+..++..++++++.+.|.+ .++.+..+.. + ...+.++. .+..++...|
T Consensus 263 ~~~~~~~~~a~~~al~~~~~~-~~~~~~~~~~~~~l~~~L~~--~g~~~~~~~~---~-~~~~~~~~~~~~~~~~~~L~~ 335 (385)
T TIGR01825 263 TAQPPAVVAALAAAVDELQRS-PELMERLWDNTRFFKAGLGK--LGYDTGGSET---P-ITPVVIGDEKAAQEFSRRLFD 335 (385)
T ss_pred CCCCHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHH--cCCCCCCCCC---C-EEEEEECCHHHHHHHHHHHHH
Confidence 234556667777788754332 34667778889999999977 3555543221 2 22223322 1344566665
Q ss_pred CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1707 KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1707 ~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
+||.++++.....+ ...++||++++.+++.+++++++++|++.
T Consensus 336 ~gi~v~~~~~~~~~----------------~~~~~iRi~~~~~~~~e~i~~~~~~l~~~ 378 (385)
T TIGR01825 336 EGIFAQSIVFPTVP----------------RGTARIRNIPTAEHTKDDLDQALDAYEKV 378 (385)
T ss_pred CCcEEcccCCCCCC----------------CCCceEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 78888533221111 11268999999999999999999999873
|
This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions. |
| >TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.4e-18 Score=214.88 Aligned_cols=298 Identities=16% Similarity=0.117 Sum_probs=226.7
Q ss_pred hhhhHHHHHHHHHHHHHHHhCCCCC--cEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHH-HHHHhCCc
Q psy15216 35 YGWTAEKAIEKARNEVAQLIYADPR--EIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSI-RKLENDGF 111 (2602)
Q Consensus 35 ~~~~~~~~~~~~r~~lA~~~g~~~~--~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~-~~~~~~G~ 111 (2602)
.+..+.+.+.++++.+.++++++.+ -+++++|+|.+++.++.++. .++|+.|++.. ..+- ++. +++++.|+
T Consensus 33 Rs~~F~~i~~e~~~~L~~l~~~~~~~~v~~l~GsGT~a~Eaa~~nl~---~~~g~~vLv~g--~FG~-r~~~eia~~~g~ 106 (374)
T TIGR01365 33 RSKLGKEKLAEAIKKTREMLGVPADYLIGIVPASDTGAVEMALWSML---GCRGVDVLAWE--SFGK-GWVTDVTKQLKL 106 (374)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCchHHHHHHHHHHcC---CCCCCeEEEEC--HHHH-HHHHHHHHhcCC
Confidence 3667788999999999999998433 36789999999999999987 13788888753 3332 344 67778899
Q ss_pred -EEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHhcCCEEEEecccccccccccCCCCCcc
Q psy15216 112 -RVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVD 190 (2602)
Q Consensus 112 -~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~~g~~livD~a~a~g~~~~dl~~~~~D 190 (2602)
++..+..+++..+++++++. . +.|+++|..++||..+|++++...+ ++++++||++.++|..++++++ +|
T Consensus 107 ~~v~~l~~~~g~~~~~~~ve~--~---~~v~~vhnETSTGv~npv~~i~~~~--~~~lliVDavSs~g~~~l~~d~--iD 177 (374)
T TIGR01365 107 PDVRVLEAEYGKLPDLKKVDF--K---NDVVFTWNGTTSGVRVPNGDFIPAD--REGLTICDATSAAFAQDLDYHK--LD 177 (374)
T ss_pred CCcEEEcCCCCCCCCHHHcCC--C---CCEEEecCCCchheecccccccccc--CCCcEEEEccchhcCCCCChhH--Cc
Confidence 48888877777899999973 2 2377999999999999997665322 5899999999999999999984 89
Q ss_pred EEEecccc-ccCCCCcEEEEEecCCCCcccce--e------cCCCc--------cccccccCcchhHHHHHHHHHHHHH-
Q psy15216 191 LMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQ--I------HGGGH--------EYGLRSGTLATHQIVGMGEAFRLAR- 252 (2602)
Q Consensus 191 ~~~~S~~K-~~Gp~G~G~l~~~~~~~~~l~~~--~------~g~~~--------~~~~~~gt~~~~~~~al~~al~~~~- 252 (2602)
++++|.+| +.+|+|+++++++++.+++.... + ..+.. ..+..+.||++..++++..+++++.
T Consensus 178 v~~tgsQK~L~~ppGls~v~vs~~Al~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~t~~TP~v~~l~a~~~~l~~i~~ 257 (374)
T TIGR01365 178 VVTFSWQKVLGGEGAHGMLILSPRAVARLESYTPAWPLPKIFRLTKGGKLNKKIFEGSTINTPSMLCVEDWLDALKWAES 257 (374)
T ss_pred EEEEechhccCCCCceEEEEECHHHHHHHhhcCCCCCChhhhccccccchhhhhhcCCCCCChHHHHHHHHHHHHHHHHH
Confidence 99999999 67799999999999877654311 1 01000 0123456778888888888887443
Q ss_pred H-hHHHHHHHHHHHHHHHHHHHhhccCceEEeCC-CCCCCCceEEEEEcc--c-----C-----hhHHHHHh--CCeEEc
Q psy15216 253 I-EMKEELKRILFLQKRLYNGLMESIEEIYINGD-MNNRIPHNLNISFNF--I-----E-----GESLLMAI--KDIAVS 316 (2602)
Q Consensus 253 ~-~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~-~~~~~~~~~~~~~~~--~-----~-----~~~~~~~L--~gI~v~ 316 (2602)
+ ++++..+|++++++.+++.+++ +..+.++.. +..+++..+.+.++. . + ..++...| +||.+.
T Consensus 258 egGle~~~~Rh~~~a~~l~~~l~~-lg~l~~~~~~~~~rS~tvt~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~i~ 336 (374)
T TIGR01365 258 IGGLKPLIARADDNLAVLEAFVAK-NNWIHFLAETPEIRSNTSVCLKVVDPAIDALDEDAQADFAKELISTLEKEGVAYD 336 (374)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHH-CCCcccCCCChhhcCCCeEEEEeCCccccccccchhhHHHHHHHHHHHHCCEEEe
Confidence 3 6999999999999999999988 433777654 445666667777643 2 2 46666666 788887
Q ss_pred ccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHH
Q psy15216 317 SGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK 367 (2602)
Q Consensus 317 ~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~ 367 (2602)
+|..... ...+||+...+.+.+|++.++.+|.
T Consensus 337 ~G~~~~~-------------------~~~fRIg~~G~i~~~di~~l~~~l~ 368 (374)
T TIGR01365 337 IGSYRDA-------------------PSGLRIWCGATVEKSDLECLCPWLD 368 (374)
T ss_pred ccccccC-------------------CCceEEecCCcCCHHHHHHHHHHHH
Confidence 6654322 2679999988999999999999998
|
This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri. |
| >PLN02607 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.4e-18 Score=223.39 Aligned_cols=288 Identities=17% Similarity=0.196 Sum_probs=201.3
Q ss_pred HHHHHHHHHHHHhC--------CCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEE
Q psy15216 1438 AIEKARNEVAQLIY--------ADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRV 1509 (2602)
Q Consensus 1438 ~~~~lr~~ia~~~g--------~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v 1509 (2602)
...++|+++|++++ +++++|++|+|+++|+.+++.++. +|||.|+++.|.|+.+...+.. +.|+++
T Consensus 96 G~~~LR~aiA~~l~~~~~~~~~v~p~~Ivit~G~t~al~~l~~~l~----~pGD~Vlv~~P~Y~~f~~~~~~--~~g~~v 169 (447)
T PLN02607 96 GLKSFRQAMASFMEQIRGGKARFDPDRIVLTAGATAANELLTFILA----DPGDALLVPTPYYPGFDRDLRW--RTGVKI 169 (447)
T ss_pred chHHHHHHHHHHHHHhcCCCCCcCHHHeEEcCChHHHHHHHHHHhC----CCCCEEEEcCCCCcchHHHHHh--cCCcEE
Confidence 35677888887763 577899999999999999999887 8999999999999998765542 348899
Q ss_pred EEeccCC--CCCcChhHHHhhccC------CceEEEEeccccccccccC---hHHHHHHhhhcCCEEEEecccccCcc--
Q psy15216 1510 TYLKPKN--NGLITLSQLEEKICS------DTILVSVMLVNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQAVGKI-- 1576 (2602)
Q Consensus 1510 ~~v~~~~--~~~id~d~l~~~i~~------~t~lv~l~~~~n~tG~~~~---l~~I~~ia~~~gi~vivD~a~~~g~~-- 1576 (2602)
+.|+.+. ++.+|++++++++.. +++++++++|+||||.++| +++|.++|++||+++|+|++++....
T Consensus 170 v~v~~~~~~~f~~~~~~le~a~~~a~~~~~~vk~lll~nP~NPtG~~~s~e~l~~l~~~~~~~~i~lI~DEiYa~~~f~~ 249 (447)
T PLN02607 170 VPIHCDSSNNFQVTPQALEAAYQEAEAANIRVRGVLITNPSNPLGATVQRSVLEDILDFVVRKNIHLVSDEIYSGSVFSA 249 (447)
T ss_pred EEEeCCCCCCCcCCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCCEEEEeccccccccCC
Confidence 8888764 356899999999863 7899999999999999999 77888999999999999999864211
Q ss_pred -c-ccC-------C--C-CCccEEEEccccccCCCc--eEEEEEe-cCCCCccccccccCCccccCCCCCcchhHHHHHH
Q psy15216 1577 -D-INI-------Q--N-YKVDLMSFSAHKIYGPKG--IGALYIR-RNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMG 1641 (2602)
Q Consensus 1577 -~-~~l-------~--~-~~~D~~v~S~~K~~gp~G--~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~ 1641 (2602)
+ .++ . . ...-.++.|++|.||.+| +||++.. ++++..+.... ..+..+.....++.
T Consensus 250 ~~f~S~~s~~~~~~~~~~~~~v~vi~s~SK~fg~~GlRvG~ivs~n~~l~~~~~~~~---------~~~~~s~~~q~~~~ 320 (447)
T PLN02607 250 SEFVSVAEIVEARGYKGVAERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMS---------SFTLVSSQTQHLLA 320 (447)
T ss_pred CCcccHHHHHhhcCCCCCcCcEEEEEcchhcCCCCcceEEEEEEcCHHHHHHHHHHh---------hcCCCCHHHHHHHH
Confidence 1 111 0 1 112366779999888888 8999984 33333332211 01123334445555
Q ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecC--------C-cHHHHHhc---
Q psy15216 1642 EAFR---LARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI--------E-GESLLMAI--- 1706 (2602)
Q Consensus 1642 ~aL~---~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~--------~-~~~~~~~L--- 1706 (2602)
..|. +....+...++++.+.++.+.+.|.+ .++.+..+ ..+.++++... + ..++...+
T Consensus 321 ~~L~d~~~~~~~l~~~r~~l~~~~~~~~~~L~~--~gi~~~~~-----~ag~fvw~~L~~~~~~~~~~~e~~l~~~ll~~ 393 (447)
T PLN02607 321 SMLSDEEFTENYIRTNRERLRKRYEMIVQGLRR--AGIECLKG-----NAGLFCWMNLSPLLETPTREGELALWDSILRE 393 (447)
T ss_pred HHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCcccC-----CeeEEEEEEchHhhcCCCchhHHHHHHHHHHh
Confidence 5554 23345667778888888889999987 35543321 11223333211 1 12344333
Q ss_pred CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1707 KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1707 ~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
.||.+.+|..|... ..+|+||+++. .+.++++..+++|.+.
T Consensus 394 ~gV~v~pG~~f~~~-----------------~~g~fRi~fa~-~~~~~l~~gl~Ri~~~ 434 (447)
T PLN02607 394 VKLNISPGSSCHCS-----------------EPGWFRVCFAN-MSEDTLEVALKRIHRF 434 (447)
T ss_pred CCEEEcCccccCCC-----------------CCCEEEEEecc-CCHHHHHHHHHHHHHH
Confidence 59999999877532 13899999985 3578999999999863
|
|
| >PRK07590 L,L-diaminopimelate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.5e-18 Score=225.27 Aligned_cols=320 Identities=13% Similarity=0.116 Sum_probs=209.1
Q ss_pred CCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHh------CCCCCcEEEeCCHHHHHHHHHHhhhh
Q psy15216 1403 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI------YADPREIIWTSGATESNNLAIKGAAH 1476 (2602)
Q Consensus 1403 ~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~------g~~~~~iv~t~gaT~al~~al~~l~~ 1476 (2602)
.+.++.+.+++.+.+.....++....| .......++|+++++++ ++++++|++|+|+++++.+++ .+.
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y----~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~l~-~~~- 119 (409)
T PRK07590 46 QPLPPAVIEAMHKAVDEMGTAETFRGY----GPEQGYDFLREKIAENDYQARGCDISADEIFISDGAKCDTGNIL-DIF- 119 (409)
T ss_pred CCCCHHHHHHHHHHHhcccccCCccCC----CCCCCCHHHHHHHHHHHHHhcCCcCChhhEEECCCHHHHHHHHH-Hhc-
Confidence 456778888888887642111110011 11123467888888875 568899999999999998754 443
Q ss_pred hhccCCCEEEEcCCCCcchHHHHHHHHhCCcE-----------EEEeccCCC--CCcChhHHHhhccCCceEEEEecccc
Q psy15216 1477 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFR-----------VTYLKPKNN--GLITLSQLEEKICSDTILVSVMLVNN 1543 (2602)
Q Consensus 1477 ~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~-----------v~~v~~~~~--~~id~d~l~~~i~~~t~lv~l~~~~n 1543 (2602)
++||+|++++|+|+.+......+ |.+ ++.++.+.+ +.+|.+ .+++++|++++|+|
T Consensus 120 ---~~gd~V~v~~P~Y~~~~~~~~~~---g~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~------~~~~k~i~l~nP~N 187 (409)
T PRK07590 120 ---GPDNTIAVTDPVYPVYVDTNVMA---GRTGEANEDGRYSGIVYLPCTAENNFVPELP------EEKVDIIYLCFPNN 187 (409)
T ss_pred ---CCCCEEEEeCCCCcchHHHHHHc---CCcccccccccccceeEeecccccCCcccCc------ccCceEEEEeCCCC
Confidence 79999999999999998877776 665 888887643 223322 26889999999999
Q ss_pred ccccccC---hHHHHHHhhhcCCEEEEeccccc----CcccccCCCC----CccEEEEccccccCCCc--eEEEEEecCC
Q psy15216 1544 EIGVIQP---ILEIGELCRSKGVIFHCDAAQAV----GKIDINIQNY----KVDLMSFSAHKIYGPKG--IGALYIRRNP 1610 (2602)
Q Consensus 1544 ~tG~~~~---l~~I~~ia~~~gi~vivD~a~~~----g~~~~~l~~~----~~D~~v~S~~K~~gp~G--~G~l~~~~~~ 1610 (2602)
|||.+++ +++|+++|++||+++|+|++|+. +..+..+... +.-+++.||+|.+|++| +||+++++++
T Consensus 188 PTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~pGlRiG~~i~~~~l 267 (409)
T PRK07590 188 PTGTVLTKEQLKAWVDYAKENGSLILFDAAYEAFISDPSLPHSIYEIEGARECAIEFRSFSKTAGFTGTRCAYTVVPKEL 267 (409)
T ss_pred CcCCcCCHHHHHHHHHHHHHcCeEEEEEccchhhccCCCCCcchhhCCCcccceEEEecCccccCCcCceeEEEEcCHHH
Confidence 9999999 56788889999999999999863 1111112111 12366789999888778 8999999877
Q ss_pred CCcccc-----ccccCCccccCCCCCcchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCC
Q psy15216 1611 RTRIEA-----QIHGGGHEYGLRSGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNN 1684 (2602)
Q Consensus 1611 ~~~l~~-----~~~g~~~~~~~~~gt~~~~~~~al~~aL~-~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~ 1684 (2602)
++.+.. ...-+.........+.+...+.++..++. .....+++.++++++.++++.+.|.+ . ++.+..+..
T Consensus 268 i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~-~-~~~~~~~~g- 344 (409)
T PRK07590 268 KGKTSDGEGVSLNSLWNRRQSTKFNGVSYIVQRAAEAVYSPEGKAQIKELIDYYMENAKIIREGLES-A-GFEVYGGVN- 344 (409)
T ss_pred hhhccccchhhhHHHHHHHHhhcccCcCHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHh-c-CCceecCCc-
Confidence 653210 00000000000112344455555555664 22345677788888899999999987 3 555442211
Q ss_pred CCCceEEEEEec-CCcHHHHHhc---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHH
Q psy15216 1685 RIPHNLNISFNF-IEGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIK 1760 (2602)
Q Consensus 1685 ~~~~~~~~~~~~-~~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~ 1760 (2602)
.....+.++. .+..++...+ ++|.+.+|..|... ..+++||++. .+.++++.+++
T Consensus 345 --~~f~wi~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~-----------------~~~~iRi~~~--~~~~~l~~~l~ 403 (409)
T PRK07590 345 --APYIWVKTPDGMSSWDFFDKLLQEANVVGTPGSGFGPS-----------------GEGYFRLSAF--GSRENVLEAME 403 (409)
T ss_pred --ceEEEEECCCCCCHHHHHHHHHHHCCEEEeChhHhCCC-----------------CCCEEEEEcc--CCHHHHHHHHH
Confidence 1122233332 2345565544 59999999876432 1279999963 47899999999
Q ss_pred HHHH
Q psy15216 1761 LLKM 1764 (2602)
Q Consensus 1761 ~L~~ 1764 (2602)
.|.+
T Consensus 404 rl~~ 407 (409)
T PRK07590 404 RIKK 407 (409)
T ss_pred HHHh
Confidence 9875
|
|
| >PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=3e-18 Score=223.20 Aligned_cols=302 Identities=17% Similarity=0.131 Sum_probs=208.7
Q ss_pred HHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCC-
Q psy15216 42 AIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN- 120 (2602)
Q Consensus 42 ~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~- 120 (2602)
...++|++++++++.+ ++++|+|+++|+.+++.++. +||| |+++++.|+++...+... |++++.+++++
T Consensus 79 g~~~Lreaia~~~~~~--~vv~t~ggt~A~~~~~~all----~pGD-Vii~~p~~~~~~~~i~~~---G~~~v~v~~~~~ 148 (460)
T PRK13238 79 SYYRLEDAVKDIFGYP--YTIPTHQGRAAEQILFPVLI----KKGD-VVPSNYHFDTTRAHIELN---GATAVDLVIDEA 148 (460)
T ss_pred CHHHHHHHHHHHhCCC--cEEECCCHHHHHHHHHHHhC----CCCC-EEccCCcccchHHHHHHc---CCEEEEEecccc
Confidence 4678899999999964 79999999999999999987 8999 999999999987766655 99999998853
Q ss_pred ---------CCccChHHHHhhcc----CCceEEEEecccCccc-cccc---HHHHHHHHHhcCCEEEEecccccc-----
Q psy15216 121 ---------NGLITLSQLEEKIC----SDTILVSVMLVNNEIG-VIQP---ILEIGELCRSKGVIFHCDAAQAVG----- 178 (2602)
Q Consensus 121 ---------~~~ld~e~l~~~i~----~~tklv~i~~~~npTG-~~~~---l~~I~~la~~~g~~livD~a~a~g----- 178 (2602)
.+.+|+++|+++++ ++|++|++++|+|||| .+++ +++|.++|++||+++|+|++|...
T Consensus 149 ~~~~~~~~f~g~id~e~Le~~i~~~~~~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~~e~a~f~ 228 (460)
T PRK13238 149 LDTGSRHPFKGNFDLEKLEALIEEVGAENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARFAENAYFI 228 (460)
T ss_pred ccccccccccCCcCHHHHHHHHhhcCCCceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcchhhhhhhh
Confidence 24599999999998 4799999999999998 7777 568999999999999999988542
Q ss_pred ------cccccCC------CCCccEEEecccc-ccCCCCcEEEEEe-cCCCCcccceecCCCccccccccCcchhHHHHH
Q psy15216 179 ------KIDINIQ------NYKVDLMSFSAHK-IYGPKGIGALYIR-RNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGM 244 (2602)
Q Consensus 179 ------~~~~dl~------~~~~D~~~~S~~K-~~Gp~G~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al 244 (2602)
.....+. ....|++++|++| .++|.| |+++.+ +++.++++.....+. .....+..+...+.|+
T Consensus 229 ~~~e~g~~~~si~~i~~~~~s~~D~~~~Sg~K~g~~~~G-G~i~~~d~~l~~~~~~~~~~~~--g~~t~~g~~~~~~~Al 305 (460)
T PRK13238 229 KQREPGYKDKSIKEIAREMFSYADGLTMSAKKDAMVNIG-GLLCFRDEDLFTECRTLCILYE--GFPTYGGLAGRDMEAL 305 (460)
T ss_pred hhccccccCCCHHHHhhhhcccCcEEEEecccCCCCcce-eEEEcChHHHHHHhhhcccccC--CcccccCcHHHHHHHH
Confidence 1122211 1236999999999 567776 888887 466666654432110 0112344455556666
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEccc---------ChhHHHHHh---CC
Q psy15216 245 GEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI---------EGESLLMAI---KD 312 (2602)
Q Consensus 245 ~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~---------~~~~~~~~L---~g 312 (2602)
..+|.-.. -+...++..+.+++|.+.|.+ .|+.+..|... +.+.+.+... .+.++..+| .|
T Consensus 306 a~~l~e~~--~~~~~~~~~~~~~~l~~~L~~--~G~~~~~p~Gg---~~v~~d~~~~~~~~~~~~~~~~~~a~~L~~e~G 378 (460)
T PRK13238 306 AVGLYEGM--DEDYLAYRIGQVEYLGEGLEE--AGVPIQTPAGG---HAVFVDAGKFLPHIPAEQFPAQALACELYLEAG 378 (460)
T ss_pred HhhHHHhh--ChHHHHHHHHHHHHHHHHHHH--CCCCeEccCCc---eEEEEEchhcCCCCCCCCCchHHHHHHHHHHcC
Confidence 66665211 122333334457888999977 48877765432 2333333221 245566666 69
Q ss_pred eEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCC-CCCHHHHHHHHHHHHhh
Q psy15216 313 IAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGR-FTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 313 I~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~-~~t~edid~li~~L~~~ 369 (2602)
|.+-++..+..+.. ...|.........+|+++.- --|+++++.++++|++.
T Consensus 379 V~~~~~~~f~~~~~------~~~~~~~~~~~~~~Rla~~rr~~~~~~~~~~~~~l~~~ 430 (460)
T PRK13238 379 IRGVEIGSLLLGRD------PKTGEQLPAPAELLRLAIPRRVYTQSHMDYVAEALKAV 430 (460)
T ss_pred eeeecccceecccC------CCCccccCCccceEEEecccccCCHHHHHHHHHHHHHH
Confidence 99988776654310 01111001113789999863 23889999999999864
|
|
| >PRK08133 O-succinylhomoserine sulfhydrylase; Validated | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.9e-18 Score=219.73 Aligned_cols=218 Identities=13% Similarity=0.141 Sum_probs=163.7
Q ss_pred HHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHH-HHHhCCcEEEEecc
Q psy15216 1436 EKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIR-KLENDGFRVTYLKP 1514 (2602)
Q Consensus 1436 ~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~-~~~~~G~~v~~v~~ 1514 (2602)
.....++++.+++++|.+ ++++++|+++|+..+++++. ++||+|+++++.|++....+. .+...|+++++++.
T Consensus 60 ~p~~~~le~~la~l~g~~--~~v~~ssG~~Ai~~al~al~----~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~v~~vd~ 133 (390)
T PRK08133 60 NPTVTMFQERLAALEGAE--ACVATASGMAAILAVVMALL----QAGDHVVSSRSLFGSTVSLFEKIFARFGIETTFVDL 133 (390)
T ss_pred ChHHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHHh----CCCCEEEEccCcchhHHHHHHHHHHHcCcEEEEECC
Confidence 345788999999999965 68899999999999999886 899999999999998776654 34566999999976
Q ss_pred CCCCCcChhHHHhhccCCceEEEEeccccccccccChHHHHHHhhhcCCEEEEecccccCcccccCCCCCccEEEEcccc
Q psy15216 1515 KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK 1594 (2602)
Q Consensus 1515 ~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K 1594 (2602)
+ |+++++++++++|++|++++|+||+|.+.|+++|.++|++||+++++|++++.+....++ .+++|++++|+||
T Consensus 134 ~-----d~~~l~~~i~~~tklV~ie~p~NptG~v~dl~~I~~la~~~gi~livD~t~~~~~~~~pl-~~g~Divv~S~sK 207 (390)
T PRK08133 134 T-----DLDAWRAAVRPNTKLFFLETPSNPLTELADIAALAEIAHAAGALLVVDNCFCTPALQQPL-KLGADVVIHSATK 207 (390)
T ss_pred C-----CHHHHHHhcCcCCeEEEEECCCCCCCCcCCHHHHHHHHHHcCCEEEEECCCcccccCCch-hhCCcEEEeecce
Confidence 4 789999999999999999999999999999999999999999999999998766543332 4578999999999
Q ss_pred ccCCCc--e-EEEEEecCCCCccccccccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15216 1595 IYGPKG--I-GALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLME 1671 (2602)
Q Consensus 1595 ~~gp~G--~-G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~ 1671 (2602)
++++.| + |+++.+++.++++..... ....+.+....+ .+++-+ ..+..+.+++.+++..+.+.|.+
T Consensus 208 ~~~g~g~~~GG~vv~~~~~~~~~~~~~~-------~~g~~~~~~~a~---~~l~gl-~tl~~R~~~~~~~a~~la~~L~~ 276 (390)
T PRK08133 208 YLDGQGRVLGGAVVGSKELMEEVFGFLR-------TAGPTLSPFNAW---VFLKGL-ETLSLRMEAHSANALALAEWLEA 276 (390)
T ss_pred eecCCcceEeEEEEcCHHHHHHHHHHHH-------HhCCCCCHHHHH---HHHccc-chHHHHHHHHHHHHHHHHHHHHh
Confidence 887776 3 667766655444432221 011122222211 222211 13455556666777788888876
Q ss_pred cCCcEE
Q psy15216 1672 SIEEIY 1677 (2602)
Q Consensus 1672 ~~~gl~ 1677 (2602)
.|++.
T Consensus 277 -~p~v~ 281 (390)
T PRK08133 277 -HPGVE 281 (390)
T ss_pred -CCCee
Confidence 66664
|
|
| >TIGR01174 ftsA cell division protein FtsA | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.4e-18 Score=221.20 Aligned_cols=194 Identities=17% Similarity=0.239 Sum_probs=153.4
Q ss_pred HHHHHHHHHHHHcCCceeEeechhHHHHHHhhhccCCCCceEEEEEeCCceEEEEEEEEeCCEEEEEEEecCCCCchhHH
Q psy15216 2175 IQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDF 2254 (2602)
Q Consensus 2175 ~qr~~l~~Aa~~AGl~~~~li~EP~AAAl~y~~~~~~~~~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~ 2254 (2602)
...+.+.+|++.||+++..++.||.|+|++|... ...+..++|+|+||||+|+++++- +.+. ......+||++|
T Consensus 158 ~~v~~~~~~~~~aGl~~~~i~~~~~A~a~a~~~~-~~~~~~~~vvDiG~gtt~i~i~~~--g~~~---~~~~i~~GG~~i 231 (371)
T TIGR01174 158 TILRNLVKCVERCGLEVDNIVLSGLASAIAVLTE-DEKELGVCLIDIGGGTTDIAVYTG--GSIR---YTKVIPIGGNHI 231 (371)
T ss_pred HHHHHHHHHHHHcCCCeeeEEEhhhhhhhhhcCc-chhcCCEEEEEeCCCcEEEEEEEC--CEEE---EEeeecchHHHH
Confidence 5678888999999999999999999999988543 234567899999999999999863 3322 233478999999
Q ss_pred HHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhccc------ceEEEEEEecCCceEEEEcCHHHHHHHHHHHHHHH
Q psy15216 2255 DYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQ------SSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNRT 2328 (2602)
Q Consensus 2255 D~~l~~~l~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~------~~~~~~i~~~~~~~~~~~itr~~fe~l~~~~~~~~ 2328 (2602)
|+.|.+.+.. .+.+||++|+.++.. .+..+.++..+ .....+++|++|++++++.++++
T Consensus 232 t~~i~~~l~~--------------~~~~AE~lK~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~is~~~l~~ii~~~~~ei 296 (371)
T TIGR01174 232 TKDIAKALRT--------------PLEEAERIKIKYGCASIPLEGPDENIEIPSVG-ERPPRSLSRKELAEIIEARAEEI 296 (371)
T ss_pred HHHHHHHhCC--------------CHHHHHHHHHHeeEecccCCCCCCEEEeccCC-CCCCeEEcHHHHHHHHHHHHHHH
Confidence 9988764421 247899999998763 23445554332 34678999999999999999999
Q ss_pred HHHHH-HHHHHcCCCccccce-EEEEeCccchHHHHHHHHhhcCCcccC------------CCCccchhhhHHHHH
Q psy15216 2329 ILLSS-KALMDANLTIKDINN-VILVGGSTRMKHIHEGVSNFFKTTLLT------------SIDPDKAVVFGAAIQ 2390 (2602)
Q Consensus 2329 ~~~i~-~~l~~~~~~~~~i~~-V~LvGG~s~~p~v~~~l~~~f~~~~~~------------~~~p~~aVa~GAa~~ 2390 (2602)
.+.+. +.|++++.. .+++. |+|+||+|++|.+++.+++.|+.++.. ..+|..++|.|.++|
T Consensus 297 ~~~i~~~~L~~~~~~-~~i~~gIvLtGG~S~ipgi~~~l~~~~~~~vr~~~P~~~~~~~~~~~~p~~~~a~Gl~~~ 371 (371)
T TIGR01174 297 LEIVKQKELRKSGFK-EELNGGIVLTGGGAQLEGIVELAEKVFDNPVRIGLPQNIGGLTEDVNDPEYSTAVGLLLY 371 (371)
T ss_pred HHHHHHHHHHhcCCc-ccCCCEEEEeChHHcccCHHHHHHHHhCCCeEEECCCccCCchhhcCCcHHHHHHHHHhC
Confidence 99997 999998876 67877 999999999999999999999864221 127888888888764
|
This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70. |
| >PLN02263 serine decarboxylase | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.2e-17 Score=208.81 Aligned_cols=290 Identities=15% Similarity=0.122 Sum_probs=219.7
Q ss_pred hHHHHHHHHHHHHHHHhCCCCC--cEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEE
Q psy15216 38 TAEKAIEKARNEVAQLIYADPR--EIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTY 115 (2602)
Q Consensus 38 ~~~~~~~~~r~~lA~~~g~~~~--~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~ 115 (2602)
...++..++.+++++++|.+++ ..++|+|+|+++..++.+..+. .+...+++++..|.|+.+++.++ |++++.
T Consensus 130 ~s~~~E~~Vi~wla~L~g~p~~~~~G~vtsGGTEaNL~Al~aARe~--~~~~vvy~S~~aH~Sv~KAa~ll---gi~~~~ 204 (470)
T PLN02263 130 HSRQFEVGVLDWFARLWEIEKNEYWGYITNCGTEGNLHGILVGREV--FPDGILYASRESHYSVFKAARMY---RMECVK 204 (470)
T ss_pred hHHHHHHHHHHHHHHHhCCCCCCCeEEEeCcHHHHHHHHHHHHHhh--cCCcEEEEcCCccHHHHHHHHhc---CCcceE
Confidence 5677889999999999999764 4789999999999999998743 24458999999999999999988 999999
Q ss_pred eccCCCCccChHHHHhhccCC---ceEEEEecccCcccccccHHHHHHHHHhcCC-----EEEEeccccccccc------
Q psy15216 116 LKPKNNGLITLSQLEEKICSD---TILVSVMLVNNEIGVIQPILEIGELCRSKGV-----IFHCDAAQAVGKID------ 181 (2602)
Q Consensus 116 v~~~~~~~ld~e~l~~~i~~~---tklv~i~~~~npTG~~~~l~~I~~la~~~g~-----~livD~a~a~g~~~------ 181 (2602)
||+++++.+|+++|+++|..+ +-+|+.+.+++++|.+.|+++|+++|+++|+ |+|||+|++....|
T Consensus 205 Vp~d~~g~mD~~aL~~aI~~d~~~P~iVvataGTT~~GAiDpi~eIa~i~~~~g~~~~~iwlHVDAA~GG~~lPf~~~~~ 284 (470)
T PLN02263 205 VDTLVSGEIDCADFKAKLLANKDKPAIINVNIGTTVKGAVDDLDLVIKTLEECGFSQDRFYIHCDGALFGLMMPFVKRAP 284 (470)
T ss_pred eccCCCCcCcHHHHHHHHHhCCCCcEEEEEEecCCCCcCCCCHHHHHHHHHHcCCccCCeeEEEeccchhhHhhhccccc
Confidence 999999999999999999654 4688899999999999999999999999997 99999998765443
Q ss_pred -ccCCCCCccEEEeccccc-cCCCCcEEEEEecCCCCcccc--eecCCCccccccccCcchhHHHHHHHHHH-HHHHhHH
Q psy15216 182 -INIQNYKVDLMSFSAHKI-YGPKGIGALYIRRNPRTRIEA--QIHGGGHEYGLRSGTLATHQIVGMGEAFR-LARIEMK 256 (2602)
Q Consensus 182 -~dl~~~~~D~~~~S~~K~-~Gp~G~G~l~~~~~~~~~l~~--~~~g~~~~~~~~~gt~~~~~~~al~~al~-~~~~~~~ 256 (2602)
+++.. ++|.++.++||+ +.|.++|++++++.....+.. .+... ......|+-+....+.++.+|+ +..+++.
T Consensus 285 ~~df~~-~vDSIsvD~HK~l~~P~~cgvll~R~~~~~~~~~~~~Yl~~--~d~ti~gSR~g~~al~lW~~L~~~G~~G~~ 361 (470)
T PLN02263 285 KVTFKK-PIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLAS--RDATIMGSRNGHAPIFLWYTLNRKGYRGFQ 361 (470)
T ss_pred ccCCCc-CccEEEECCccccCCCcCEEEEEEehhhHhhhccChHhhCC--CCCCcCCCCCcHHHHHHHHHHHHhCHHHHH
Confidence 33333 389999999995 569999999999765433311 11111 1112245555555666777777 5567899
Q ss_pred HHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcccChhHHHHHhCCeEEcccccCCCCCCChHHHHHHcC
Q psy15216 257 EELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALG 336 (2602)
Q Consensus 257 ~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~gI~v~~g~~~~~~~~~~~~~~~~~g 336 (2602)
+..+++.++++++.++|.+ . ++..+..+ ...++.|.......+ .+|..+.. .
T Consensus 362 ~~i~~~~~~A~~l~~~l~~-~-g~~~~~~p-----~s~~V~f~~p~~~~~---~~gW~L~~----~-------------- 413 (470)
T PLN02263 362 KEVQKCLRNAHYLKDRLRE-A-GISAMLNE-----LSSTVVFERPKDEEF---VRRWQLAC----Q-------------- 413 (470)
T ss_pred HHHHHHHHHHHHHHHHHHh-C-CCeEEeCC-----CceEEEEecCchHHh---hcceEEcc----C--------------
Confidence 9999999999999999988 3 66655432 223444543221111 14444431 1
Q ss_pred CCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 337 CNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 337 ~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
.+.+|+.+.+..+.+.+|.|++.|++.
T Consensus 414 ------~~~~Hivvmphv~~~~id~fi~DL~~~ 440 (470)
T PLN02263 414 ------GNIAHVVVMPSVTIEKLDYFLKELVEK 440 (470)
T ss_pred ------CCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 146999998888999999999999964
|
|
| >PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.9e-18 Score=217.81 Aligned_cols=334 Identities=15% Similarity=0.085 Sum_probs=223.3
Q ss_pred CCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCE
Q psy15216 9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKH 88 (2602)
Q Consensus 9 ~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~ 88 (2602)
..+..++++.+.+...+.++. .+..+++++++++++|.+ ++++++|+|+|+++++.++. +++||+
T Consensus 9 ~~~~~~~~~~~~l~~~~~~g~----------~~~~~~~e~~la~~~g~~--~~v~~~sgt~al~~~l~~~~---~~~Gd~ 73 (375)
T PRK11706 9 VVGTELDYIQQAMSSGKLCGD----------GGFTRRCQQWLEQRFGSA--KVLLTPSCTAALEMAALLLD---IQPGDE 73 (375)
T ss_pred CCHHHHHHHHHHHHcCCccCC----------CHHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHHHhC---CCCCCE
Confidence 345667788887765322211 135688889999999874 89999999999999887764 479999
Q ss_pred EEEcCCCCcccHHHHHHHHhCCcEEEEeccCCC-CccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHhcCC
Q psy15216 89 IITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN-GLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGV 167 (2602)
Q Consensus 89 Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~-~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~~g~ 167 (2602)
|+++.++|+++..++... |+++++++++++ +.+|+++++++++++|++|+++| ++|...++++|.++|++||+
T Consensus 74 Viv~~~t~~~~~~~~~~~---G~~~v~~d~d~~~~~~d~~~le~~i~~~tk~i~~~~---~~G~~~~~~~i~~la~~~~i 147 (375)
T PRK11706 74 VIMPSYTFVSTANAFVLR---GAKIVFVDIRPDTMNIDETLIEAAITPKTRAIVPVH---YAGVACEMDTIMALAKKHNL 147 (375)
T ss_pred EEECCCCcHHHHHHHHHc---CCEEEEEecCCCcCCcCHHHHHHhcCCCCeEEEEeC---CCCCccCHHHHHHHHHHcCC
Confidence 999999999998877665 999999999875 57899999999999999999875 59999999999999999999
Q ss_pred EEEEecccccccccccCCCCC--ccEEEeccc--cccCCC-CcEEEEEecCCCCcccceecCCCcccc-----------c
Q psy15216 168 IFHCDAAQAVGKIDINIQNYK--VDLMSFSAH--KIYGPK-GIGALYIRRNPRTRIEAQIHGGGHEYG-----------L 231 (2602)
Q Consensus 168 ~livD~a~a~g~~~~dl~~~~--~D~~~~S~~--K~~Gp~-G~G~l~~~~~~~~~l~~~~~g~~~~~~-----------~ 231 (2602)
++|+|++|+.|.. .+....+ .|+-++||| |.+++. |.+++..++++.++++.....|..... .
T Consensus 148 ~vIeD~a~a~g~~-~~~~~~g~~~~~~~~Sf~~~K~l~~g~gG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 226 (375)
T PRK11706 148 FVVEDAAQGVMST-YKGRALGTIGHIGCFSFHETKNYTAGEGGALLINDPALIERAEIIREKGTNRSQFFRGQVDKYTWV 226 (375)
T ss_pred EEEEECccccccc-cCCeeeecCcCEEEEeCCCCccccccCCeEEEECCHHHHHHHHHHHHcCCCcchhhccCCCcceee
Confidence 9999999998863 2221111 478888888 876653 333444445566555544332211000 0
Q ss_pred cccCcchhHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHhhccC---ceEEeCCCCC--CCCceEEEEEc-ccChh
Q psy15216 232 RSGTLATHQIVGMGEAFRL-ARIEMKEELKRILFLQKRLYNGLMESIE---EIYINGDMNN--RIPHNLNISFN-FIEGE 304 (2602)
Q Consensus 232 ~~gt~~~~~~~al~~al~~-~~~~~~~~~~~~~~l~~~l~~~L~~~~~---g~~l~~~~~~--~~~~~~~~~~~-~~~~~ 304 (2602)
..|+...+.- +.+|+-. ....+++..++.+++.+++.+.|.. ++ .+.+...+.. ...+.+.+.++ ..+.+
T Consensus 227 ~~g~~~~~~~--~~aa~~~~ql~~l~~~~~~R~~~~~~~~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 303 (375)
T PRK11706 227 DIGSSYLPSE--LQAAYLWAQLEAADRINQRRLALWQRYYDALAP-LAEAGRIELPSIPDDCKHNAHMFYIKLRDLEDRS 303 (375)
T ss_pred ecccccCcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCcCCeeecCCCCCCCceeeEEEEEEECCcCCHH
Confidence 1122221111 1222221 1234678888888999999999876 54 2443321111 11223333333 24567
Q ss_pred HHHHHh--CCeEEcccccCCCCCCChHHHHH-----HcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 305 SLLMAI--KDIAVSSGSACTSASLEPSYVLR-----ALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 305 ~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~-----~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
++.+.| +||.++.. +.+.+.++.+... .+...+....+.+.++++...+++|+++++++|++.
T Consensus 304 ~l~~~L~~~gI~~~~~--~~p~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l~~~~~~~i~~~i~~~ 373 (375)
T PRK11706 304 ALINFLKEAGIMAVFH--YIPLHSSPAGERFGRFHGEDRYTTKESERLLRLPLFYNLTDVEQRTVIDTILEF 373 (375)
T ss_pred HHHHHHHHCCCCcccc--CCccCcchhhHhcCCCCCCChHHHHHHhCcEeccCCCCCCHHHHHHHHHHHHHH
Confidence 888888 78887643 3343444433211 122233445578999999999999999999999863
|
|
| >PRK13392 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.1e-18 Score=222.71 Aligned_cols=319 Identities=18% Similarity=0.164 Sum_probs=212.9
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCC
Q psy15216 1404 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK 1483 (2602)
Q Consensus 1404 ~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd 1483 (2602)
..++.+++++.+.++....+++. .+. -+.......++++++++++|. ++.++++ ++++|+..++..+.. ..+|+
T Consensus 60 ~~~p~v~~a~~~~~~~~~~~~~~-s~~-~~~~~~~~~~Le~~la~~~g~-~~~i~~~-sG~~a~~~~i~~l~~--~~~g~ 133 (410)
T PRK13392 60 GQHPDVIGAMVDALDRYGAGAGG-TRN-ISGTSHPHVLLERELADLHGK-ESALLFT-SGYVSNDAALSTLGK--LLPGC 133 (410)
T ss_pred CCCHHHHHHHHHHHHHcCCCCch-hhh-cccChHHHHHHHHHHHHHhCC-CCEEEEC-cHHHHHHHHHHHHhc--CCCCC
Confidence 46789999999988764322221 111 111223467899999999996 3445555 557888888876651 24789
Q ss_pred EEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhc----cCCceEEEEeccccccccccChHHHHHHhh
Q psy15216 1484 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKI----CSDTILVSVMLVNNEIGVIQPILEIGELCR 1559 (2602)
Q Consensus 1484 ~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i----~~~t~lv~l~~~~n~tG~~~~l~~I~~ia~ 1559 (2602)
.|+++...|+++...+.. .|+++..++.+ |.+.+++.+ +++|++|++++|+||||.+.|+++|.++|+
T Consensus 134 ~vi~~~~~h~s~~~~~~~---~g~~~~~~~~~-----d~~~l~~~l~~~~~~~t~~v~i~~~~n~tG~~~~l~~i~~l~~ 205 (410)
T PRK13392 134 VILSDALNHASMIEGIRR---SGAEKQVFRHN-----DLADLEEQLASVDPDRPKLIAFESVYSMDGDIAPIEAICDLAD 205 (410)
T ss_pred EEEEehhhhHHHHHHHHH---cCCeEEEEeCC-----CHHHHHHHHHhccCCCCEEEEEeCCCCCCcccccHHHHHHHHH
Confidence 999988889887665443 48887776432 344454444 368899999999999999999999999999
Q ss_pred hcCCEEEEecccccCcccc---cC---CC--CCccEEEEccccccCCCceEEEEEecCCCCccccccccCCccccCCCCC
Q psy15216 1560 SKGVIFHCDAAQAVGKIDI---NI---QN--YKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGT 1631 (2602)
Q Consensus 1560 ~~gi~vivD~a~~~g~~~~---~l---~~--~~~D~~v~S~~K~~gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt 1631 (2602)
+||+++++|++|+.|.... .+ .. ..+|+++.|++|.+|..| ||++.++++++.++....++ .+ ..+
T Consensus 206 ~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~~div~~tlsK~~g~~G-G~~~~~~~~~~~l~~~~~~~----~~-s~~ 279 (410)
T PRK13392 206 RYNALTYVDEVHAVGLYGARGGGIAERDGLMDRIDMIQGTLAKAFGCLG-GYIAASADLIDFVRSFAPGF----IF-TTA 279 (410)
T ss_pred HcCCEEEEECCccccCcCCCCCchhhhccCCCCCcEEEEEChHhhhccc-chhhcCHHHHHHHHHhCcch----hc-cCc
Confidence 9999999999998664311 00 01 136788899999888777 89988877666544322111 11 223
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecC-CcHHHHHhc---C
Q psy15216 1632 LATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI-EGESLLMAI---K 1707 (2602)
Q Consensus 1632 ~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~L---~ 1707 (2602)
.+...++++.++|+.... .....+++.++++++++.|.+ .|+.+..+. .++..+.++.. ...++...| +
T Consensus 280 ~~~~~~~a~~aaL~~~~~-~~~~~~~~~~~~~~l~~~L~~--~g~~~~~~~----~~~~~i~~~~~~~~~~~~~~L~~~~ 352 (410)
T PRK13392 280 LPPAVAAGATAAIRHLKT-SQTERDAHQDRVAALKAKLNA--NGIPVMPSP----SHIVPVMVGDPTLCKAISDRLMSEH 352 (410)
T ss_pred CCHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHH--cCCCCCCCC----CCEEEEEeCCHHHHHHHHHHHHHhC
Confidence 444556777788875443 234557778888999999987 355544221 12222333211 234566554 5
Q ss_pred CEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1708 DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1708 gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
||.+++......+ ....++|++++..+|.+|+++++++|++.
T Consensus 353 GI~v~~~~~p~~~----------------~~~~~lRis~~~~~t~edid~l~~aL~~~ 394 (410)
T PRK13392 353 GIYIQPINYPTVP----------------RGTERLRITPTPLHDDEDIDALVAALVAI 394 (410)
T ss_pred CEEEeeeCCCCCC----------------CCCceEEEEECCCCCHHHHHHHHHHHHHH
Confidence 9999865432211 11268999999999999999999999874
|
|
| >TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-17 Score=217.92 Aligned_cols=258 Identities=19% Similarity=0.231 Sum_probs=195.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhCCC-----------C--CcEEEeCCHHHHHHHHHHhhhhhhcc--------------
Q psy15216 1428 NHIYGWTAEKAIEKARNEVAQLIYAD-----------P--REIIWTSGATESNNLAIKGAAHFYKK-------------- 1480 (2602)
Q Consensus 1428 ~~~~~~~~~~~~~~lr~~ia~~~g~~-----------~--~~iv~t~gaT~al~~al~~l~~~~~~-------------- 1480 (2602)
.+..++...++..++.++++++++.. + ...+||+|+|+|+..++.+.....+.
T Consensus 120 ~~~~spa~t~lE~~v~~wl~~l~~~~~~~~~~~~~~~~~~~~G~~tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl~ 199 (522)
T TIGR03799 120 KIETSKAFTPLERQVLGMMHHLVYGQDDDFYRKWMHSADHSLGAFCSGGTVANITALWVARNRLLKADGDFKGVAREGLF 199 (522)
T ss_pred eeecCcchHHHHHHHHHHHHHHhccCcccchhhcccCCCCCCeEEcCchHHHHHHHHHHHHHHhccccccccccccccch
Confidence 35566777888899999999998521 1 23688999999999998887654321
Q ss_pred --------CCCEEEEcCCCCcchHHHHHHHHhCCc---EEEEeccCCCCCcChhHHHhhcc----CCceEEEEe--cccc
Q psy15216 1481 --------RGKHIITVQTEHKSVLDSIRKLENDGF---RVTYLKPKNNGLITLSQLEEKIC----SDTILVSVM--LVNN 1543 (2602)
Q Consensus 1481 --------~gd~Vlv~~~~~~s~~~~~~~~~~~G~---~v~~v~~~~~~~id~d~l~~~i~----~~t~lv~l~--~~~n 1543 (2602)
++..|++++.+|.|+..+...+ |+ +++.|+++.++.+|+++|+++|. .+++.++++ +.++
T Consensus 200 ~~~~~~~~~~~~v~~S~~~H~S~~kaa~~l---glg~~~v~~vp~d~~g~~d~~~L~~~i~~~~~~g~~~~~vvataGtt 276 (522)
T TIGR03799 200 AALKHYGYDGLAILVSERGHYSLGKAADVL---GIGRDNLIAIKTDANNRIDVDALRDKCAELAEQNIKPLAIVGVAGTT 276 (522)
T ss_pred hhhhhccCCceEEEECCCchHHHHHHHHHc---CCCcccEEEEEeCCCCcCCHHHHHHHHHHHHHCCCCcEEEEEEecCc
Confidence 2458999999999998877776 55 79999999999999999999996 455555555 6677
Q ss_pred ccccccChHHHHHHhhhcCCEEEEecccccCccccc-----CCCC-CccEEEEcccc-ccCCCceEEEEEecC-CCCccc
Q psy15216 1544 EIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDIN-----IQNY-KVDLMSFSAHK-IYGPKGIGALYIRRN-PRTRIE 1615 (2602)
Q Consensus 1544 ~tG~~~~l~~I~~ia~~~gi~vivD~a~~~g~~~~~-----l~~~-~~D~~v~S~~K-~~gp~G~G~l~~~~~-~~~~l~ 1615 (2602)
.||.+.|+++|+++|++||+|+|||+|++.+....+ +... ++|++++|+|| +++|.|+|++++++. ..+.+.
T Consensus 277 ~tGaiDpl~eIa~i~~~~g~~lHVDaA~gg~~~~~~~~r~~l~gle~aDSit~d~HK~l~~P~g~G~llvr~~~~~~~~~ 356 (522)
T TIGR03799 277 ETGNIDPLDEMADIAQELGCHFHVDAAWGGATLLSNTYRHLLKGIERADSVTIDAHKQLYVPMGAGMVLFKDPALMSAIE 356 (522)
T ss_pred CCCCcCCHHHHHHHHHHcCCeEEEEchhhhHHHhCHHHHHHhcCchhCCEEEEChhhcCCcCcccEEEEEeCHHHHHHhc
Confidence 999999999999999999999999999987765544 4443 68999999999 789999999999864 222222
Q ss_pred c--ccc---cCC--ccccCCCCCcchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCC
Q psy15216 1616 A--QIH---GGG--HEYGLRSGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIP 1687 (2602)
Q Consensus 1616 ~--~~~---g~~--~~~~~~~gt~~~~~~~al~~aL~-~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~ 1687 (2602)
+ .+. +.. ....++ |+.+... ..+..+|+ +...+++.+.++..++++++.+.|.+ .++++++.++. .
T Consensus 357 ~~~~Yl~~~~~~d~~~~~le-gsR~~~a-l~lw~aL~~lG~~G~~~ii~~~~~la~~l~~~L~~-~~~~el~~~p~---l 430 (522)
T TIGR03799 357 HHAEYILRKGSKDLGSHTLE-GSRPGMA-MLVYAGLHIIGRKGYELLIDQSIEKAKYFADLIQQ-QPDFELVTEPE---L 430 (522)
T ss_pred cCcchhcCCCCCccccceee-cCcchHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh-CCCeEEecCCC---c
Confidence 2 111 111 123444 4555544 35778888 45678999999999999999999987 78999987643 2
Q ss_pred ceEEEEE
Q psy15216 1688 HNLNISF 1694 (2602)
Q Consensus 1688 ~~~~~~~ 1694 (2602)
++++|.+
T Consensus 431 ~iv~Fr~ 437 (522)
T TIGR03799 431 CLLTYRY 437 (522)
T ss_pred cEEEEEE
Confidence 3555554
|
This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent). |
| >PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.6e-18 Score=220.35 Aligned_cols=307 Identities=14% Similarity=0.118 Sum_probs=204.1
Q ss_pred chhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHHHH-HhCCcE
Q psy15216 34 IYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDGFR 112 (2602)
Q Consensus 34 ~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~-~~~G~~ 112 (2602)
.+++...+..+++++++|+++|+++. +++++++.|+..++.++. ++||+|+++.+.|+++...+... .+.|++
T Consensus 58 ~y~r~~~p~~~~Le~~lA~l~G~~~~--~~~~sG~~Ai~~~l~~~l----~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~ 131 (398)
T PRK07504 58 IYSRYSNPTVDMFEKRMCALEGAEDA--RATASGMAAVTAAILCQV----KAGDHVVAARALFGSCRYVVETLLPRYGIE 131 (398)
T ss_pred eeecCCCchHHHHHHHHHHHhCCCee--eEecCHHHHHHHHHHHHh----CCCCEEEEcCCchhHHHHHHHHHHhhcCeE
Confidence 33433445678999999999998743 447788889988777765 89999999999999987666443 567999
Q ss_pred EEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHhcCCEEEEecccccccccccCCCCCccEE
Q psy15216 113 VTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLM 192 (2602)
Q Consensus 113 v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~~g~~livD~a~a~g~~~~dl~~~~~D~~ 192 (2602)
+++++ .+|+++++++++++||+|++++|+||||.+.|+++|.++|+++|+++++|++|+.+.... ...+++|++
T Consensus 132 v~~vd-----~~d~e~l~~ai~~~tklV~lesp~NptG~v~dl~~I~~la~~~gi~lvvD~a~a~~~~~~-~~~~gaDiv 205 (398)
T PRK07504 132 STLVD-----GLDLDNWEKAVRPNTKVFFLESPTNPTLEVIDIAAVAKIANQAGAKLVVDNVFATPLFQK-PLELGAHIV 205 (398)
T ss_pred EEEEC-----CCCHHHHHHhcCcCceEEEEECCCCCCcEecCHHHHHHHHHHcCCEEEEECCccccccCC-chhhCCCEE
Confidence 99986 368999999999999999999999999999999999999999999999999998775432 234688999
Q ss_pred EeccccccCCCC--c-EEEEEecCCCCc-ccceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy15216 193 SFSAHKIYGPKG--I-GALYIRRNPRTR-IEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKR 268 (2602)
Q Consensus 193 ~~S~~K~~Gp~G--~-G~l~~~~~~~~~-l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~ 268 (2602)
++|+||+++.+| . |+++.+++.+.+ ++.... .....++....+.+..+|+. +..+.++..+++..
T Consensus 206 v~S~sK~l~g~g~~~GG~vv~~~~~i~~~~~~~~~-------~~g~~~s~~~A~~~l~~L~t----l~~R~~~~~~na~~ 274 (398)
T PRK07504 206 VYSATKHIDGQGRCLGGVVLSDKAWIEEHLQDYFR-------HTGPSLSPFNAWTLLKGLET----LPVRVRQQTESAAA 274 (398)
T ss_pred EeeccccccCCccceEEEEEeCcHHHHHHHHHHHH-------HhCCCCCHHHHHHHHhccch----HHHHHHHHHHHHHH
Confidence 999999887665 4 566666654432 221110 01112333333333334432 45566666788888
Q ss_pred HHHHHhhccCceE-EeCC--CCCC-----------CCceEEEEEcc--cChhHHHHHh--CCeEEcccccCCC---C---
Q psy15216 269 LYNGLMESIEEIY-INGD--MNNR-----------IPHNLNISFNF--IEGESLLMAI--KDIAVSSGSACTS---A--- 324 (2602)
Q Consensus 269 l~~~L~~~~~g~~-l~~~--~~~~-----------~~~~~~~~~~~--~~~~~~~~~L--~gI~v~~g~~~~~---~--- 324 (2602)
+.+.|.+ .|++. ++-| +++. ...++.|.+.+ .....+++.| .++.++-|...+- +
T Consensus 275 la~~L~~-~p~v~~v~yp~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~~~~~~l~~~~~~~slG~~~sl~~~p~~~ 353 (398)
T PRK07504 275 IADFLAG-HPKVARVIYPGRADHPQADIIAKQMTGGSTLVAFELKGGKEAAFRFLNALKIVRISNNLGDAKSLITHPATT 353 (398)
T ss_pred HHHHHHc-CCCccEEECCCCCCCccHHHHHHhCCCCccEEEEEeCCCHHHHHHHHHhCCcceecccCCCCCeeeeCCCCC
Confidence 8888876 56653 2211 1110 12234444432 1233566666 3444444432221 0
Q ss_pred -C-CChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 325 -S-LEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 325 -~-~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
| ..+.......|+++ +.||+|+|..+.++-++.+.++|++
T Consensus 354 ~~~~~~~~~~~~~gi~~----~liR~svGlE~~~dl~~dl~~al~~ 395 (398)
T PRK07504 354 THKNLSPEARAELGISE----GFLRLSAGLEDTDDLIEDLAAALKK 395 (398)
T ss_pred CcccCCHHHHHhcCCCC----CeEEEEeccCCHHHHHHHHHHHHHh
Confidence 0 11222334677763 8899999987666666666666653
|
|
| >TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-17 Score=218.26 Aligned_cols=257 Identities=19% Similarity=0.235 Sum_probs=195.2
Q ss_pred cchhhhHHHHHHHHHHHHHHHhCCC-----------C--CcEEEeCCHHHHHHHHHHhccccccc---------------
Q psy15216 33 HIYGWTAEKAIEKARNEVAQLIYAD-----------P--REIIWTSGATESNNLAIKGAAHFYKK--------------- 84 (2602)
Q Consensus 33 ~~~~~~~~~~~~~~r~~lA~~~g~~-----------~--~~Iv~t~g~T~al~~~~~~l~~~~~~--------------- 84 (2602)
+..+.....+..++.++++++++.. + ...++++|+|+|+..++.+.....+.
T Consensus 121 ~~~spa~t~lE~~v~~wl~~l~~~~~~~~~~~~~~~~~~~~G~~tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl~~ 200 (522)
T TIGR03799 121 IETSKAFTPLERQVLGMMHHLVYGQDDDFYRKWMHSADHSLGAFCSGGTVANITALWVARNRLLKADGDFKGVAREGLFA 200 (522)
T ss_pred eecCcchHHHHHHHHHHHHHHhccCcccchhhcccCCCCCCeEEcCchHHHHHHHHHHHHHHhccccccccccccccchh
Confidence 4456667778888999999998521 1 23689999999999988887643221
Q ss_pred -------CCCEEEEcCCCCcccHHHHHHHHhCCc---EEEEeccCCCCccChHHHHhhcc----CCceEEEEe--cccCc
Q psy15216 85 -------RGKHIITVQTEHKSVLDSIRKLENDGF---RVTYLKPKNNGLITLSQLEEKIC----SDTILVSVM--LVNNE 148 (2602)
Q Consensus 85 -------~gd~Vlv~~~~~~s~~~~~~~~~~~G~---~v~~v~~~~~~~ld~e~l~~~i~----~~tklv~i~--~~~np 148 (2602)
++..|++++.+|.|+..++..+ |+ +++.+++++++.+|+++|+++|. .+++.++++ +.++.
T Consensus 201 ~~~~~~~~~~~v~~S~~~H~S~~kaa~~l---glg~~~v~~vp~d~~g~~d~~~L~~~i~~~~~~g~~~~~vvataGtt~ 277 (522)
T TIGR03799 201 ALKHYGYDGLAILVSERGHYSLGKAADVL---GIGRDNLIAIKTDANNRIDVDALRDKCAELAEQNIKPLAIVGVAGTTE 277 (522)
T ss_pred hhhhccCCceEEEECCCchHHHHHHHHHc---CCCcccEEEEEeCCCCcCCHHHHHHHHHHHHHCCCCcEEEEEEecCcC
Confidence 2468999999999998888777 55 79999999999999999999986 455655555 66789
Q ss_pred ccccccHHHHHHHHHhcCCEEEEeccccccccccc-----CCCC-CccEEEecccc-ccCCCCcEEEEEecC-CCCcccc
Q psy15216 149 IGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDIN-----IQNY-KVDLMSFSAHK-IYGPKGIGALYIRRN-PRTRIEA 220 (2602)
Q Consensus 149 TG~~~~l~~I~~la~~~g~~livD~a~a~g~~~~d-----l~~~-~~D~~~~S~~K-~~Gp~G~G~l~~~~~-~~~~l~~ 220 (2602)
||.+.|+++|+++|+++|+|+|||+||+.+....+ +... ++|++++|+|| +++|.|+|++++++. ..+.+.+
T Consensus 278 tGaiDpl~eIa~i~~~~g~~lHVDaA~gg~~~~~~~~r~~l~gle~aDSit~d~HK~l~~P~g~G~llvr~~~~~~~~~~ 357 (522)
T TIGR03799 278 TGNIDPLDEMADIAQELGCHFHVDAAWGGATLLSNTYRHLLKGIERADSVTIDAHKQLYVPMGAGMVLFKDPALMSAIEH 357 (522)
T ss_pred CCCcCCHHHHHHHHHHcCCeEEEEchhhhHHHhCHHHHHHhcCchhCCEEEEChhhcCCcCcccEEEEEeCHHHHHHhcc
Confidence 99999999999999999999999999987765444 4443 68999999999 778999999999853 3233332
Q ss_pred ---ee-cCCC---ccccccccCcchhHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCc
Q psy15216 221 ---QI-HGGG---HEYGLRSGTLATHQIVGMGEAFRL-ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPH 292 (2602)
Q Consensus 221 ---~~-~g~~---~~~~~~~gt~~~~~~~al~~al~~-~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~ 292 (2602)
++ ..+. .+..++ ++.+..+ +.+.++|++ ...++++++++..++++++.+.|.+ .|+++++.++.. +
T Consensus 358 ~~~Yl~~~~~~d~~~~~le-gsR~~~a-l~lw~aL~~lG~~G~~~ii~~~~~la~~l~~~L~~-~~~~el~~~p~l---~ 431 (522)
T TIGR03799 358 HAEYILRKGSKDLGSHTLE-GSRPGMA-MLVYAGLHIIGRKGYELLIDQSIEKAKYFADLIQQ-QPDFELVTEPEL---C 431 (522)
T ss_pred CcchhcCCCCCccccceee-cCcchHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh-CCCeEEecCCCc---c
Confidence 11 1111 123444 4444444 457788884 4578999999999999999999987 799999986542 4
Q ss_pred eEEEEE
Q psy15216 293 NLNISF 298 (2602)
Q Consensus 293 ~~~~~~ 298 (2602)
+++|.+
T Consensus 432 iv~Fr~ 437 (522)
T TIGR03799 432 LLTYRY 437 (522)
T ss_pred EEEEEE
Confidence 555554
|
This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent). |
| >PRK06767 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.9e-18 Score=221.21 Aligned_cols=299 Identities=16% Similarity=0.130 Sum_probs=201.8
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHHH-HhCCcEEEEeccC
Q psy15216 1437 KAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDGFRVTYLKPK 1515 (2602)
Q Consensus 1437 ~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~-~~~G~~v~~v~~~ 1515 (2602)
....++++.+++++|.+ ..++++|++.|+..++.++. ++||+|+++.+.|++....+... ...|+++.+++.
T Consensus 61 pt~~~Le~~lA~l~G~~--~al~~~sG~~Ai~~~l~al~----~~Gd~Vv~~~~~y~~~~~~~~~~~~~~gi~~~~~~~- 133 (386)
T PRK06767 61 PTVKLFEERMAVLEGGE--EALAFGSGMAAISATLIGFL----KAGDHIICSNGLYGCTYGFLEVLEEKFMITHSFCDM- 133 (386)
T ss_pred cchHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHHh----CCCCEEEEcCCcHHHHHHHHHHHHhhcCeEEEEeCC-
Confidence 34688999999999964 45667777889999988887 89999999999999877766554 445777777654
Q ss_pred CCCCcChhHHHhhccCCceEEEEeccccccccccChHHHHHHhhhcCCEEEEecccccCcccccCCCCCccEEEEccccc
Q psy15216 1516 NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKI 1595 (2602)
Q Consensus 1516 ~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K~ 1595 (2602)
.|+++++++++++|++|++++|+||||.+.|+++|.++|+++|+++++|++++.+....++ ..++|++++|++|+
T Consensus 134 ----~d~~~l~~~i~~~tklV~lesp~NptG~v~dl~~I~~la~~~g~~vivD~a~a~~~~~~pl-~~g~Div~~S~sK~ 208 (386)
T PRK06767 134 ----ETEADIENKIRPNTKLIFVETPINPTMKLIDLKQVIRVAKRNGLLVIVDNTFCSPYLQRPL-ELGCDAVVHSATKY 208 (386)
T ss_pred ----CCHHHHHHhhCcCceEEEEeCCCCCCceecCHHHHHHHHHHcCCEEEEECCCcccccCCch-hcCCcEEEecCcce
Confidence 3789999999999999999999999999999999999999999999999999866544444 35789999999997
Q ss_pred cCCCc---eEEEEEecCCCCccccccccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy15216 1596 YGPKG---IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMES 1672 (2602)
Q Consensus 1596 ~gp~G---~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~ 1672 (2602)
++..| .|+++.+++.+.++...... ...+..+....+.+..+|+ .+..++++.++++.++.+.|.+
T Consensus 209 l~g~g~~~gG~v~~~~~~i~~~~~~~~~------~~g~~~~~~~a~l~~~~L~----tl~~r~~~~~~~a~~la~~L~~- 277 (386)
T PRK06767 209 IGGHGDVVAGVTICKTRALAEKIRPMRK------DIGGIMAPFDAWLLLRGLK----TLAVRMDRHCDNAEKIVSFLKN- 277 (386)
T ss_pred ecCCCCceeEEEEeChHHHHHHHHHHHH------HhCCCCCHHHHHHHHcCCC----cHHHHHHHHHHHHHHHHHHHHc-
Confidence 76555 58999888766554321110 0011222222222222222 2345667778889999999987
Q ss_pred CCcEEEeCCCCC--------CCCceEEEEEecC--CcHHHHHhc--CCEEEccccccCC---CC-----CChhHHHHHcC
Q psy15216 1673 IEEIYINGDMNN--------RIPHNLNISFNFI--EGESLLMAI--KDIAVSSGSACTS---AS-----LEPSYVLRALG 1732 (2602)
Q Consensus 1673 ~~gl~i~~~~~~--------~~~~~~~~~~~~~--~~~~~~~~L--~gI~v~~g~~~~~---~~-----~~~~~~~~~~~ 1732 (2602)
.|++.....|.+ ....+..|.+.+. +...++..| .++.++-|...+- +. ..+.-.....|
T Consensus 278 ~p~v~~v~~p~~~~~~~~~~~~gg~vsf~l~~~~~~~~~f~~~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g 357 (386)
T PRK06767 278 HDAVEGVWYPEGELASRQMKRGGGVISFSIKGGKEETQAFINDLHFITIAVSLGDTETLIQHPATMTHAAIPAELRQEMG 357 (386)
T ss_pred CCCccEEECCCcHHHHHhCCCCCceEEEEEcCCHHHHHHHHHhCCccEEecCCCCcCccccCCCccccccCCHHHHHhcC
Confidence 788864332211 1233455555421 345677777 4566665643321 10 01111223455
Q ss_pred CCccccCCeEEEecCCCCCHHHHHHHHHHH
Q psy15216 1733 CNDELAHSSIRFTIGRFTTEKEIDFTIKLL 1762 (2602)
Q Consensus 1733 ~~~~~~~~~iRls~~~~~t~edid~li~~L 1762 (2602)
+.+ +.||||+|..+.++-++.+-++|
T Consensus 358 i~~----~l~R~svGlE~~~dl~~dl~~al 383 (386)
T PRK06767 358 IYD----NLIRLSVGLESWEDIVSDLEQAL 383 (386)
T ss_pred CCC----CeEEEEeccCCHHHHHHHHHHHH
Confidence 553 78999999855444444444444
|
|
| >PRK08045 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.9e-18 Score=217.60 Aligned_cols=308 Identities=15% Similarity=0.094 Sum_probs=207.1
Q ss_pred cchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHHHH-HhCCc
Q psy15216 33 HIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDGF 111 (2602)
Q Consensus 33 ~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~-~~~G~ 111 (2602)
+.+++...+..+.+++++|++.|.+ .+++++|+++|+.+++.++. ++||+|+++++.|++....+..+ ...|.
T Consensus 44 ~~Y~R~~~pt~~~L~~~lA~l~g~~--~~i~~~sg~~Ai~~~l~~l~----~~GD~Vl~~~~~y~~~~~~~~~~~~~~gi 117 (386)
T PRK08045 44 HDYSRRGNPTRDVVQRALAELEGGA--GAVLTNTGMSAIHLVTTVFL----KPGDLLVAPHDCYGGSYRLFDSLAKRGCY 117 (386)
T ss_pred ceeeCCCCccHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHHHHc----CCCCEEEEcCCCcHHHHHHHHHHHhhCCe
Confidence 4455556667889999999999953 69999999999999999887 89999999999999866666544 44566
Q ss_pred EEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHhcCCEEEEecccccccccccCCCCCccE
Q psy15216 112 RVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDL 191 (2602)
Q Consensus 112 ~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~~g~~livD~a~a~g~~~~dl~~~~~D~ 191 (2602)
++.+++ ..|+++++++++++|++|++++|+||||.+.|+++|.++|+++|+++++|++++.+.....+ .+++|+
T Consensus 118 ~v~~vd-----~~d~e~l~~~l~~~tklV~l~sP~NPtG~v~di~~I~~ia~~~g~~vivDeay~~~~~~~pl-~~gaDi 191 (386)
T PRK08045 118 RVLFVD-----QGDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREAGAVSVVDNTFLSPALQNPL-ALGADL 191 (386)
T ss_pred EEEEeC-----CCCHHHHHHhcccCCeEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCccccCCch-hhCCCE
Confidence 777764 25899999999999999999999999999999999999999999999999999887654333 468899
Q ss_pred EEecccccc-CCCC--cEEEEEe-cCCCCcccceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy15216 192 MSFSAHKIY-GPKG--IGALYIR-RNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQK 267 (2602)
Q Consensus 192 ~~~S~~K~~-Gp~G--~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~ 267 (2602)
++.|+||++ |+.+ .|+++.+ +++.+++.... .....+.+....+.+..+|+. +..+.++..+++.
T Consensus 192 vv~S~tK~l~G~~d~~~G~vi~~~~~~~~~l~~~~-------~~~g~~~~p~~~~l~~rgl~t----l~~R~~~~~~na~ 260 (386)
T PRK08045 192 VLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWA-------NNIGVTGGAFDSYLLLRGLRT----LVPRMELAQRNAQ 260 (386)
T ss_pred EEeecceeccCCCCceeEEEEeCcHHHHHHHHHHH-------HhcCCCCCHHHHHHHHhhhcc----HHHHHHHHHHHHH
Confidence 999999955 5665 6777664 44444333111 111223444444444455543 4555666677777
Q ss_pred HHHHHHhhccCceE-EeCC--CCC-----------CCCceEEEEEccc--ChhHHHHHhC--CeEEcccccCC----CC-
Q psy15216 268 RLYNGLMESIEEIY-INGD--MNN-----------RIPHNLNISFNFI--EGESLLMAIK--DIAVSSGSACT----SA- 324 (2602)
Q Consensus 268 ~l~~~L~~~~~g~~-l~~~--~~~-----------~~~~~~~~~~~~~--~~~~~~~~L~--gI~v~~g~~~~----~~- 324 (2602)
.+.+.|++ .|.+. ++-| +++ .....+.|.+.+. ...++++.|+ .+.++-|...+ +.
T Consensus 261 ~la~~L~~-~p~v~~V~yp~l~~~p~~~~~~~~~~g~g~~~s~~~~~~~~~~~~f~~~l~~~~~~~s~G~~~sl~~~~~~ 339 (386)
T PRK08045 261 AIVKYLQT-QPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLRRFLGGLSLFTLAESLGGVESLISHAAT 339 (386)
T ss_pred HHHHHHHc-CCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEecCcHHHHHHHHHhccceeEeccCCCCceeEeCCCC
Confidence 77777766 56553 2111 111 1122344444321 1245666663 44444443222 10
Q ss_pred --CC-ChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 325 --SL-EPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 325 --~~-~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
|. .+.......|+. ++.||+|+|..+.++-++.+.++|++
T Consensus 340 ~~~~~~~~~~~~~~gi~----~~liR~svGlE~~~dl~~dl~~al~~ 382 (386)
T PRK08045 340 MTHAGMAPEARAAAGIS----ETLLRISTGIEDGEDLIADLENGFRA 382 (386)
T ss_pred cccccCCHHHHHhcCCC----CCeEEEEeCcCCHHHHHHHHHHHHHH
Confidence 00 011122356665 38899999987666666666666653
|
|
| >TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.7e-18 Score=222.15 Aligned_cols=297 Identities=15% Similarity=0.118 Sum_probs=196.1
Q ss_pred HHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHH-HHhCCcEEEEeccCC
Q psy15216 1438 AIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDGFRVTYLKPKN 1516 (2602)
Q Consensus 1438 ~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~-~~~~G~~v~~v~~~~ 1516 (2602)
..+++++.+++++|. ++++++++++.|++.++. +. ++||+|+++++.|+++...+.. +...|+++++++..
T Consensus 48 ~~~~le~~la~l~g~--~~~l~~~sG~~al~~~l~-ll----~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~- 119 (378)
T TIGR01329 48 TRTALESLLAKLDKA--DRAFAFSSGMAALDVITR-LL----NNGDEIIAGDDLYGGTDRLLTQVVPRSGVVVVHVDTT- 119 (378)
T ss_pred HHHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHH-Hh----CCCCEEEEcCCCchHHHHHHHHHHHHcCcEEEEeCCC-
Confidence 468899999999997 366777777889887665 44 8999999999999998776654 35669999999863
Q ss_pred CCCcChhHHHhhccCCceEEEEeccccccccccChHHHHHHhhhcCCEEEEecccccCcccccCCCCCccEEEEcccc-c
Q psy15216 1517 NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-I 1595 (2602)
Q Consensus 1517 ~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K-~ 1595 (2602)
|+++++++++++|++|++++|+||+|.+.|+++|+++|++||+++++|++++.+....++ ++++|++++|+|| +
T Consensus 120 ----d~~~le~~i~~~tklv~le~psnptg~v~dl~~I~~la~~~g~~vivD~a~~~~~~~~~l-~~g~Di~v~S~tK~l 194 (378)
T TIGR01329 120 ----DLDKVKAALGPKTKLVLLESPTNPLQKIVDIRKISEMAHAQNALVVVDNTMMSPLLCNPL-ELGADIVYHSATKFL 194 (378)
T ss_pred ----CHHHHHHhcCcCceEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCcccccCChh-hcCCcEEEEecceec
Confidence 899999999999999999999999999999999999999999999999999877654444 5689999999999 5
Q ss_pred cCCCc--eEEEEEecCC-CCccccccccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy15216 1596 YGPKG--IGALYIRRNP-RTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMES 1672 (2602)
Q Consensus 1596 ~gp~G--~G~l~~~~~~-~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~ 1672 (2602)
.|+.+ .|+++++++. .+++.+....+ ..+.+....+-+...++ .+..+.++...++..+.+.|.+
T Consensus 195 ~G~~~~~~G~v~~~~~~~~~~~~~~~~~~-------G~~~~~~~a~l~~~~l~----tl~~R~e~~~~na~~la~~L~~- 262 (378)
T TIGR01329 195 AGHSDVMAGVLAVKGEEIAKKVYFLQNST-------GSGLAPFDCWLLLRGIK----TLAIRIEKQQENARAIAMFLST- 262 (378)
T ss_pred cCCccceeEEEEeCcHHHHHHHHHHHHhc-------CCcCCHHHHHHHHccCC----CHHHHHHHHHHHHHHHHHHHHh-
Confidence 67766 7999886543 34444432100 11122211111112222 3455566666666677777765
Q ss_pred CCcEE-EeCC--CCC---------CCCceEEEEEecCC---cHHHHHhc--CCEEEccccccCC---CC-----CChhHH
Q psy15216 1673 IEEIY-INGD--MNN---------RIPHNLNISFNFIE---GESLLMAI--KDIAVSSGSACTS---AS-----LEPSYV 1727 (2602)
Q Consensus 1673 ~~gl~-i~~~--~~~---------~~~~~~~~~~~~~~---~~~~~~~L--~gI~v~~g~~~~~---~~-----~~~~~~ 1727 (2602)
.|.+. +.-| ++. .......++|...+ ..++...| .++.++-|....- +. ..+...
T Consensus 263 ~~~v~~v~~p~l~~~p~~~l~~~~~~g~~~~~sf~~~~~~~~~~~~~~L~~~~i~~s~G~~~sl~~~p~~~~~~~~~~~~ 342 (378)
T TIGR01329 263 HPRVKKVRYAGLPSHPGFHLHFSQAKGAGSVLSFETGSVALSKRLVEATKLFSITVSFGSVNSLISMPCFMSHASIPAEV 342 (378)
T ss_pred CCCccEEECCCCCCCccHHHHHHhCCCcceEEEEEECCHHHHHHHHHhCcCcccccCCCCCCceeeCCCccccccCCHHH
Confidence 45442 1111 110 01123344444322 34566666 5677777754321 10 111122
Q ss_pred HHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHH
Q psy15216 1728 LRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK 1763 (2602)
Q Consensus 1728 ~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~ 1763 (2602)
....|+++ +.||||+|....++-++.+-++|+
T Consensus 343 ~~~~gi~~----~liR~svGlE~~~dl~~dl~~al~ 374 (378)
T TIGR01329 343 REERGLPE----DLVRLSVGIEDVDDLISDLDIAFV 374 (378)
T ss_pred HHhcCCCC----CeEEEEeccCCHHHHHHHHHHHHH
Confidence 33556653 899999998554444444444443
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.7e-18 Score=212.83 Aligned_cols=299 Identities=16% Similarity=0.112 Sum_probs=226.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCCC--cEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCc-
Q psy15216 1431 YGWTAEKAIEKARNEVAQLIYADPR--EIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGF- 1507 (2602)
Q Consensus 1431 ~~~~~~~~~~~lr~~ia~~~g~~~~--~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~- 1507 (2602)
.+..+.+++.++++.+.++++++.+ -+++++|+|.++..++.++.. ++|+.|++.. +.+-....+.+++.|+
T Consensus 33 Rs~~F~~i~~e~~~~L~~l~~~~~~~~v~~l~GsGT~a~Eaa~~nl~~---~~g~~vLv~g--~FG~r~~~eia~~~g~~ 107 (374)
T TIGR01365 33 RSKLGKEKLAEAIKKTREMLGVPADYLIGIVPASDTGAVEMALWSMLG---CRGVDVLAWE--SFGKGWVTDVTKQLKLP 107 (374)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCchHHHHHHHHHHcCC---CCCCeEEEEC--HHHHHHHHHHHHhcCCC
Confidence 3778889999999999999998433 266799999999999999871 3788888853 4443323366677798
Q ss_pred EEEEeccCCCCCcChhHHHhhccCCceEEEEeccccccccccChHHHHHHhhhcCCEEEEecccccCcccccCCCCCccE
Q psy15216 1508 RVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDL 1587 (2602)
Q Consensus 1508 ~v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~ 1587 (2602)
++..+..+++..+|+++++. . +.|+++|.++.||+.+|+++|...+ +++++++|++.++|..++++++ +|+
T Consensus 108 ~v~~l~~~~g~~~~~~~ve~--~---~~v~~vhnETSTGv~npv~~i~~~~--~~~lliVDavSs~g~~~l~~d~--iDv 178 (374)
T TIGR01365 108 DVRVLEAEYGKLPDLKKVDF--K---NDVVFTWNGTTSGVRVPNGDFIPAD--REGLTICDATSAAFAQDLDYHK--LDV 178 (374)
T ss_pred CcEEEcCCCCCCCCHHHcCC--C---CCEEEecCCCchheecccccccccc--CCCcEEEEccchhcCCCCChhH--CcE
Confidence 58888877777899999983 1 2378999999999999997666322 5899999999999999999884 999
Q ss_pred EEEcccc-ccCCCceEEEEEecCCCCcccc--c------cccCCc--------cccCCCCCcchhHHHHHHHHHHHHH-H
Q psy15216 1588 MSFSAHK-IYGPKGIGALYIRRNPRTRIEA--Q------IHGGGH--------EYGLRSGTLATHQIVGMGEAFRLAR-I 1649 (2602)
Q Consensus 1588 ~v~S~~K-~~gp~G~G~l~~~~~~~~~l~~--~------~~g~~~--------~~~~~~gt~~~~~~~al~~aL~~~~-~ 1649 (2602)
+++|.+| +.+|+|+++++++++.+++... . +..... ..+..+.||++..++++..+|+++. +
T Consensus 179 ~~tgsQK~L~~ppGls~v~vs~~Al~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~t~~TP~v~~l~a~~~~l~~i~~e 258 (374)
T TIGR01365 179 VTFSWQKVLGGEGAHGMLILSPRAVARLESYTPAWPLPKIFRLTKGGKLNKKIFEGSTINTPSMLCVEDWLDALKWAESI 258 (374)
T ss_pred EEEechhccCCCCceEEEEECHHHHHHHhhcCCCCCChhhhccccccchhhhhhcCCCCCChHHHHHHHHHHHHHHHHHc
Confidence 9999999 7789999999999887654331 1 111000 1123456778888888888887544 3
Q ss_pred -HHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCC-CCCCCCceEEEEEec--C-----C-----cHHHHHhc--CCEEEcc
Q psy15216 1650 -EMKEELKRILFLQKRLYNGLMESIEEIYINGD-MNNRIPHNLNISFNF--I-----E-----GESLLMAI--KDIAVSS 1713 (2602)
Q Consensus 1650 -~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~-~~~~~~~~~~~~~~~--~-----~-----~~~~~~~L--~gI~v~~ 1713 (2602)
+++++.+|++++++.+++.+.+ +..+.++.. +..+++..+.+.++. . + ..++...| +||.+.+
T Consensus 259 gGle~~~~Rh~~~a~~l~~~l~~-lg~l~~~~~~~~~rS~tvt~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~i~~ 337 (374)
T TIGR01365 259 GGLKPLIARADDNLAVLEAFVAK-NNWIHFLAETPEIRSNTSVCLKVVDPAIDALDEDAQADFAKELISTLEKEGVAYDI 337 (374)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHH-CCCcccCCCChhhcCCCeEEEEeCCccccccccchhhHHHHHHHHHHHHCCEEEec
Confidence 6999999999999999999998 433776653 344566666677643 2 2 45566566 7898876
Q ss_pred ccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHH
Q psy15216 1714 GSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK 1763 (2602)
Q Consensus 1714 g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~ 1763 (2602)
|.....+ ..+||+..+..+.+|++.+++.|.
T Consensus 338 G~~~~~~-------------------~~fRIg~~G~i~~~di~~l~~~l~ 368 (374)
T TIGR01365 338 GSYRDAP-------------------SGLRIWCGATVEKSDLECLCPWLD 368 (374)
T ss_pred cccccCC-------------------CceEEecCCcCCHHHHHHHHHHHH
Confidence 6543222 679999999999999999999997
|
This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri. |
| >TIGR03801 asp_4_decarbox aspartate 4-decarboxylase | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.8e-18 Score=218.49 Aligned_cols=289 Identities=14% Similarity=0.114 Sum_probs=188.6
Q ss_pred cEEEeCCHHHHHHHHHHhccc-ccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCC--C-----CccChHHHHh
Q psy15216 60 EIIWTSGATESNNLAIKGAAH-FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--N-----GLITLSQLEE 131 (2602)
Q Consensus 60 ~Iv~t~g~T~al~~~~~~l~~-~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~-----~~ld~e~l~~ 131 (2602)
+|++|+|+++|+..++.++.. .+++|||+|+++.|.|+.+....... ..|++++.++.++ + +.+|++++++
T Consensus 157 ~V~it~Gat~al~~~~~~l~~~~ll~pGD~Vlv~~P~y~~y~~~~~l~-~~g~~vv~i~~~~~~~~g~~~~~~d~~~l~~ 235 (521)
T TIGR03801 157 DLFAVEGGTAAMCYIFDSLKANELLKKGDKIALMTPIFTPYLEIPELP-RYDFEVVRIKADEMTEDGTHTWQYPDKELEK 235 (521)
T ss_pred eEEEeCCHHHHHHHHHHHHhHhhcCCCCCEEEEeCCCcHHHHHHHHHh-cCCcEEEEeecccccccccccCCCCHHHHHH
Confidence 799999999999999987310 01389999999999999987766543 4477888887653 2 6789999999
Q ss_pred hccCCceEEEEecccCccccccc---HHHHHHHHHhc--CCEEEEecccccccc-cccCCC-C-CccEEEeccccccCCC
Q psy15216 132 KICSDTILVSVMLVNNEIGVIQP---ILEIGELCRSK--GVIFHCDAAQAVGKI-DINIQN-Y-KVDLMSFSAHKIYGPK 203 (2602)
Q Consensus 132 ~i~~~tklv~i~~~~npTG~~~~---l~~I~~la~~~--g~~livD~a~a~g~~-~~dl~~-~-~~D~~~~S~~K~~Gp~ 203 (2602)
++++++|++++++||||||.+++ +++|+++|++| +++||+|++|+.-.. ...+.. . ..-+++.|+||.||++
T Consensus 236 ~~~~~~kai~l~nP~NPTG~vls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~~~sl~~~~~~~vI~v~SfSK~fg~~ 315 (521)
T TIGR03801 236 LRDPSIKALFVVNPSNPPSVAMSDESIEKIVDIVANDRPDLMILTDDVYGTFVDDFRSLFAELPYNTIGVYSFSKYFGAT 315 (521)
T ss_pred hcCCCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEECCCchhhcccccchhhhCCCCEEEEEcchhhccCc
Confidence 99999999999999999999999 56678889886 899999999863211 111111 1 1347888999999999
Q ss_pred C--cEEEEEecC-----CCCcccc--------eecCCC------------------ccccccccCcchhHHH-----HHH
Q psy15216 204 G--IGALYIRRN-----PRTRIEA--------QIHGGG------------------HEYGLRSGTLATHQIV-----GMG 245 (2602)
Q Consensus 204 G--~G~l~~~~~-----~~~~l~~--------~~~g~~------------------~~~~~~~gt~~~~~~~-----al~ 245 (2602)
| +||++++++ +++.+.+ .+..-. .......|. +.++.. ++.
T Consensus 316 G~RlG~i~~~~~~v~d~li~~lp~~~~~~l~~ry~~~~~~p~~~~fidr~vadsr~v~~~~~~g~-s~p~Q~q~al~a~~ 394 (521)
T TIGR03801 316 GWRLGTIALHKDNIFDKLIAELPEEKKKELDKRYSSLTTEPRKLKFIDRLVADSRQVALNHTAGL-STPQQVQMALFSLF 394 (521)
T ss_pred hhhhhhhhcCchHHHHHHHHhccHHHHHHHhhhhccccCChhhhhhHHHHHHHHHHHHHhccCCC-CcHHHHHHHHHHHH
Confidence 8 899999865 2222211 000000 000111222 333322 232
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEe-CCCCCCCCceEEEEEccc-----------------ChhHHH
Q psy15216 246 EAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYIN-GDMNNRIPHNLNISFNFI-----------------EGESLL 307 (2602)
Q Consensus 246 ~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~-~~~~~~~~~~~~~~~~~~-----------------~~~~~~ 307 (2602)
++++....+.++..++++++++.+.+.| |+.+. .++.. ...+.+.++.. +..+++
T Consensus 395 all~~~~~y~~~~~~~~~~R~~~l~~~L-----g~~~~~~~~~g--~~Y~~~di~~~~~~~~~~~f~~~l~~~~~~~~~~ 467 (521)
T TIGR03801 395 ALMDKENAYKAETKDICRRREKLLFRGL-----GLPLQEDPNDV--AYYTLIDLEEWAEKNYGEEFSSYLKKNYSPVDVL 467 (521)
T ss_pred HHhccchhHHHHHHHHHHHHHHHHHHhc-----CCCCcCCCCCe--EEEEEeehHHHHHHhcchHHHHHHhccCCHHHHH
Confidence 3333223456677777888888887777 22211 11110 11122222211 244566
Q ss_pred HHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhhhhhhhhhHh
Q psy15216 308 MAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKEFFMSYSEK 378 (2602)
Q Consensus 308 ~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~~~~~~y~~~ 378 (2602)
.+| .||.+.||..|..+ ++++|||+.. .+++++..+.++|++. .+.|.++
T Consensus 468 ~~L~~e~gV~v~PG~~Fg~~------------------~~~vRisla~-l~~~~~~~~~~rl~~~--~~~~~~~ 520 (521)
T TIGR03801 468 FRLAEETGIVLLPGGGFGGP------------------EWSVRVSLAN-LNEYDYAEIGRAIRKI--LDEYYEA 520 (521)
T ss_pred HHHHHhCCEEEeCchhcCCC------------------CCeEEEEecC-CCHHHHHHHHHHHHHH--HHHHHHh
Confidence 666 69999999887543 2679999963 4778899999999964 3555543
|
This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1). |
| >PRK13393 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.2e-18 Score=219.74 Aligned_cols=316 Identities=18% Similarity=0.139 Sum_probs=217.0
Q ss_pred CCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCE
Q psy15216 9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKH 88 (2602)
Q Consensus 9 ~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~ 88 (2602)
.+|.+++++.+++.....+++. ........+..+++++++++++|.+ ..++.+++++|+..++.++.. ..+|+.
T Consensus 60 ~~p~v~~a~~~~~~~~~~~~~~--s~~~~~~~~~~~~le~~la~~~g~~--~~~~~~SG~~An~~ai~~l~~--~~~g~~ 133 (406)
T PRK13393 60 QHPAVLAAMHEALDTCGAGAGG--TRNISGTNHYHVLLEAELADLHGKE--AALLFTSGYVSNWAALSTLGS--RLPGCV 133 (406)
T ss_pred CCHHHHHHHHHHHHHcCCCCcc--cccccCChHHHHHHHHHHHHHhCCC--cEEEeCCcHHHHHHHHHHhhc--CCCCCE
Confidence 6788999999998764322211 1111122346788999999999963 445555556788888887651 127889
Q ss_pred EEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhcc----CCceEEEEecccCcccccccHHHHHHHHHh
Q psy15216 89 IITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKIC----SDTILVSVMLVNNEIGVIQPILEIGELCRS 164 (2602)
Q Consensus 89 Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~----~~tklv~i~~~~npTG~~~~l~~I~~la~~ 164 (2602)
|++....|+++...+... |++++.++. .|++++++.+. +++++|++++++|++|.+.|+++|.++|++
T Consensus 134 I~~~~~~H~s~~~~~~~~---g~~~~~~~~-----~d~~~l~~~l~~~~~~~~~~v~~~~v~~~~G~~~~l~~i~~l~~~ 205 (406)
T PRK13393 134 ILSDELNHASMIEGIRHS---RAEKRIFRH-----NDPADLERKLSDLDPHRPKLVAFESVYSMDGDIAPIAEICDVAEK 205 (406)
T ss_pred EEEccchhHHHHHHHHHc---CCeEEEeCC-----CCHHHHHHHHHhccCCCCEEEEEcCCCCCCCchhCHHHHHHHHHH
Confidence 999889999988877654 777777763 36677776664 367899999999999999999999999999
Q ss_pred cCCEEEEecccccccc-cc--------cCCCCCccEEEeccccccCCCCcEEEEEecCCCCcccceecCCCccccc-ccc
Q psy15216 165 KGVIFHCDAAQAVGKI-DI--------NIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGL-RSG 234 (2602)
Q Consensus 165 ~g~~livD~a~a~g~~-~~--------dl~~~~~D~~~~S~~K~~Gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~-~~g 234 (2602)
||+++++|++|+.|.. +. ++. ..+|+++.|++|.+|..| ||++.++++.+.+.+.. ..+ ..+
T Consensus 206 ~~~~livDea~~~g~~g~~G~g~~~~~~~~-~~~~i~~~tlsKa~g~~G-G~~~~~~~~~~~l~~~~------~~~~~t~ 277 (406)
T PRK13393 206 HGAMTYLDEVHAVGLYGPRGGGIAEREGLA-DRLTIIEGTLAKAFGVMG-GYITGSAALCDFIRSFA------SGFIFTT 277 (406)
T ss_pred cCCEEEEECCccccccCCCCCchhhhcCCC-CCCeEEEEeCchhhcccC-ceeeCCHHHHHHHHHhC------cCceecC
Confidence 9999999999986542 11 111 125788889999999887 88888777665554322 112 234
Q ss_pred CcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc-cChhHHHHHh---
Q psy15216 235 TLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGESLLMAI--- 310 (2602)
Q Consensus 235 t~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~L--- 310 (2602)
+.+....+++.++|+...... ..+++..++.+++++.|.+ .++.+..+.. .++.+.+.. .+..++...|
T Consensus 278 ~~~p~~~aa~~aaL~~~~~~~-~~~~~~~~~~~~l~~~L~~--~g~~~~~~~~----~i~~v~~~~~~~~~~l~~~L~~~ 350 (406)
T PRK13393 278 SLPPAVAAGALASVRHLKASS-AERERHQDRVARLRARLDK--AGIPHLPNPS----HIVPVMVGDPVLCKQISDELLDR 350 (406)
T ss_pred ccCHHHHHHHHHHHHHHhhCH-HHHHHHHHHHHHHHHHHHH--cCCCcCCCCC----CeEEEEeCCHHHHHHHHHHHHHh
Confidence 566666777778888654432 3345667888899999976 3554442211 223333322 1234566655
Q ss_pred CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 311 KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 311 ~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
+||.+++......+ ...+.|||+++.++|++|+++++++|++.
T Consensus 351 ~Gi~v~~~~~p~~p----------------~g~~~iRis~~~~~t~edid~l~~~l~~~ 393 (406)
T PRK13393 351 YGIYVQPINYPTVP----------------RGTERLRITPSPLHTDADIEHLVQALSEI 393 (406)
T ss_pred CCEEEEeECCCCCC----------------CCCceEEEEECCCCCHHHHHHHHHHHHHH
Confidence 38999865332211 11267999999999999999999999964
|
|
| >PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.5e-18 Score=216.98 Aligned_cols=332 Identities=15% Similarity=0.086 Sum_probs=218.4
Q ss_pred CHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCEE
Q psy15216 1406 DPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHI 1485 (2602)
Q Consensus 1406 ~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~V 1485 (2602)
.....+++.+.+...+.++. ....+++++++++++|++ ++++++|+|.|+++++.++. +++||+|
T Consensus 10 ~~~~~~~~~~~l~~~~~~g~----------~~~~~~~e~~la~~~g~~--~~v~~~sgt~al~~~l~~~~---~~~Gd~V 74 (375)
T PRK11706 10 VGTELDYIQQAMSSGKLCGD----------GGFTRRCQQWLEQRFGSA--KVLLTPSCTAALEMAALLLD---IQPGDEV 74 (375)
T ss_pred CHHHHHHHHHHHHcCCccCC----------CHHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHHHhC---CCCCCEE
Confidence 34556777777764322211 134678888899999864 89999999999999887764 4899999
Q ss_pred EEcCCCCcchHHHHHHHHhCCcEEEEeccCCC-CCcChhHHHhhccCCceEEEEeccccccccccChHHHHHHhhhcCCE
Q psy15216 1486 ITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN-GLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVI 1564 (2602)
Q Consensus 1486 lv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~-~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~~ia~~~gi~ 1564 (2602)
+++.++|+++..++... |+++++++++++ +.+|+++++++++++|++|+++| ++|...|+++|.++|++||++
T Consensus 75 iv~~~t~~~~~~~~~~~---G~~~v~~d~d~~~~~~d~~~le~~i~~~tk~i~~~~---~~G~~~~~~~i~~la~~~~i~ 148 (375)
T PRK11706 75 IMPSYTFVSTANAFVLR---GAKIVFVDIRPDTMNIDETLIEAAITPKTRAIVPVH---YAGVACEMDTIMALAKKHNLF 148 (375)
T ss_pred EECCCCcHHHHHHHHHc---CCEEEEEecCCCcCCcCHHHHHHhcCCCCeEEEEeC---CCCCccCHHHHHHHHHHcCCE
Confidence 99999999998777665 999999999875 47899999999999999999875 599999999999999999999
Q ss_pred EEEecccccCcccccCCCCC--ccEEEEccc--cccCCCceEEEEEe-cCCCCccccccccCCccc--------c---CC
Q psy15216 1565 FHCDAAQAVGKIDINIQNYK--VDLMSFSAH--KIYGPKGIGALYIR-RNPRTRIEAQIHGGGHEY--------G---LR 1628 (2602)
Q Consensus 1565 vivD~a~~~g~~~~~l~~~~--~D~~v~S~~--K~~gp~G~G~l~~~-~~~~~~l~~~~~g~~~~~--------~---~~ 1628 (2602)
+|+|++|+.|.. ++....+ .|+-++||| |.+++...|+++++ +++.++++.+...|.... . ..
T Consensus 149 vIeD~a~a~g~~-~~~~~~g~~~~~~~~Sf~~~K~l~~g~gG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 227 (375)
T PRK11706 149 VVEDAAQGVMST-YKGRALGTIGHIGCFSFHETKNYTAGEGGALLINDPALIERAEIIREKGTNRSQFFRGQVDKYTWVD 227 (375)
T ss_pred EEEECccccccc-cCCeeeecCcCEEEEeCCCCccccccCCeEEEECCHHHHHHHHHHHHcCCCcchhhccCCCcceeee
Confidence 999999998863 2222122 478888988 86665323545554 445554444332221100 0 01
Q ss_pred CCCcchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhcCC---cEEEeCCCCCCCCceEEE--EEe-cCCcHH
Q psy15216 1629 SGTLATHQIVGMGEAFRL-ARIEMKEELKRILFLQKRLYNGLMESIE---EIYINGDMNNRIPHNLNI--SFN-FIEGES 1701 (2602)
Q Consensus 1629 ~gt~~~~~~~al~~aL~~-~~~~~~~~~~~~~~l~~~l~~~L~~~~~---gl~i~~~~~~~~~~~~~~--~~~-~~~~~~ 1701 (2602)
.|+...+. .+.+++-. ....++...++.+++.+++.+.|.. ++ .+.+...+....+....+ .++ ..+.++
T Consensus 228 ~g~~~~~~--~~~aa~~~~ql~~l~~~~~~R~~~~~~~~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 304 (375)
T PRK11706 228 IGSSYLPS--ELQAAYLWAQLEAADRINQRRLALWQRYYDALAP-LAEAGRIELPSIPDDCKHNAHMFYIKLRDLEDRSA 304 (375)
T ss_pred cccccCcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCcCCeeecCCCCCCCceeeEEEEEEECCcCCHHH
Confidence 12222111 12223321 1133677888888888999988876 54 244332222111122222 222 234677
Q ss_pred HHHhc--CCEEEccccccCCCCCChhHHH-----HHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1702 LLMAI--KDIAVSSGSACTSASLEPSYVL-----RALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1702 ~~~~L--~gI~v~~g~~~~~~~~~~~~~~-----~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
+...| +||.++.. +.+.+.++.+.. ..++..+......+.|++++..+.+|+++++++|++
T Consensus 305 l~~~L~~~gI~~~~~--~~p~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l~~~~~~~i~~~i~~ 372 (375)
T PRK11706 305 LINFLKEAGIMAVFH--YIPLHSSPAGERFGRFHGEDRYTTKESERLLRLPLFYNLTDVEQRTVIDTILE 372 (375)
T ss_pred HHHHHHHCCCCcccc--CCccCcchhhHhcCCCCCCChHHHHHHhCcEeccCCCCCCHHHHHHHHHHHHH
Confidence 77777 78877633 333333332211 112233344557899999999999999999999996
|
|
| >PRK05664 threonine-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.9e-18 Score=215.61 Aligned_cols=264 Identities=13% Similarity=0.045 Sum_probs=190.7
Q ss_pred HHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCc
Q psy15216 44 EKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGL 123 (2602)
Q Consensus 44 ~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ 123 (2602)
.++|+++++++|. ++|++|+|+++||.+++. . .+||+|++++|.|+.+...++.+ |++++.++.+
T Consensus 52 ~~Lr~~ia~~~~~--~~I~it~Gs~~al~~~~~--~----~~gd~v~v~~P~y~~~~~~~~~~---g~~~~~v~~~---- 116 (330)
T PRK05664 52 DGLEAAARAYYGA--PQLLPVAGSQAAIQALPR--L----RAPGRVGVLSPCYAEHAHAWRRA---GHQVRELDEA---- 116 (330)
T ss_pred HHHHHHHHHHhCC--CCEEECcCHHHHHHHHHH--c----cCCCEEEEcCCChHHHHHHHHHc---CCeEEEechh----
Confidence 5779999999985 599999999999998853 2 58999999999999988877766 9999998753
Q ss_pred cChHHHHhhccCCceEEEEecccCcccccccHHH---HHHHHHhcCCEEEEecccccccc--c-ccCCCCCccEEEeccc
Q psy15216 124 ITLSQLEEKICSDTILVSVMLVNNEIGVIQPILE---IGELCRSKGVIFHCDAAQAVGKI--D-INIQNYKVDLMSFSAH 197 (2602)
Q Consensus 124 ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~---I~~la~~~g~~livD~a~a~g~~--~-~dl~~~~~D~~~~S~~ 197 (2602)
++++.+ ++++++++++||||||.+++.++ |+++|+++++++|+|+++..... + ..+...+.-+++.|||
T Consensus 117 ----~~~~~~-~~~~~v~l~nP~NPTG~~~s~~~l~~l~~~~~~~~~~iI~DE~y~~~~~~~s~~~~~~~~~vi~~~SfS 191 (330)
T PRK05664 117 ----EVEAAL-DSLDVLVVVNPNNPTGRRFDPARLLAWHARLAARGGWLVVDEAFMDNTPQHSLAACAHRPGLIVLRSFG 191 (330)
T ss_pred ----hHhhhh-cCCCEEEEeCCcCCCCCccCHHHHHHHHHHHHhcCCEEEEECCcccCCCcccccccccCCCEEEEeecc
Confidence 455555 47889999999999999999655 55556889999999999853321 1 1222222237888999
Q ss_pred cccCCCC--cEEEEEecCCCCcccceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhh
Q psy15216 198 KIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLME 275 (2602)
Q Consensus 198 K~~Gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~ 275 (2602)
|.+|++| +||+++++++++.+..... .++.+.....++.++|.. ....++.++++.+.++++.+.|.+
T Consensus 192 K~~gl~GlRiG~~v~~~~l~~~~~~~~~---------~~~~~~~~~~~~~~~L~~-~~~~~~~~~~~~~~r~~l~~~L~~ 261 (330)
T PRK05664 192 KFFGLAGARLGFVLAEPALLRALAELLG---------PWTVSGPTRWLAQAALAD-TPWQRRQRERLLAASQRLAALLRR 261 (330)
T ss_pred ccccCCCcceEEEEeCHHHHHHHHHhcC---------CCCCCHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888 8999999887776654321 123344444555566652 233466778888888999999977
Q ss_pred ccCceEEeCCCCCCCCceEEEEEcccChhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCC
Q psy15216 276 SIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRF 353 (2602)
Q Consensus 276 ~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~ 353 (2602)
. ++. +.. ....+++++..+..++...| +||.++. |.. .+++||+++.
T Consensus 262 -~-~~~---~~~---~~~~f~~~~~~~~~~~~~~l~~~gi~v~~---f~~-------------------~~~iRis~~~- 310 (330)
T PRK05664 262 -H-GLT---PAG---GCALFQWVRTEDAAALHEFLARRGILTRL---FEQ-------------------PASLRFGLPA- 310 (330)
T ss_pred -C-CCc---ccC---CcceEEEEecCCHHHHHHHHHHCCeEEEE---CCC-------------------CCeEEEECCC-
Confidence 2 432 111 11234444444566676666 7999962 221 2689999984
Q ss_pred CCHHHHHHHHHHHHhh
Q psy15216 354 TTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 354 ~t~edid~li~~L~~~ 369 (2602)
+.+++++++++|++.
T Consensus 311 -~~~~~~~l~~al~~~ 325 (330)
T PRK05664 311 -DEADWARLDQALLAY 325 (330)
T ss_pred -CHHHHHHHHHHHHHH
Confidence 678999999999864
|
|
| >PRK08776 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.4e-18 Score=216.98 Aligned_cols=308 Identities=13% Similarity=0.063 Sum_probs=206.1
Q ss_pred cchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHHHH-HhCCc
Q psy15216 33 HIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDGF 111 (2602)
Q Consensus 33 ~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~-~~~G~ 111 (2602)
+.+++...+..+++++++|++.|.+ +. ++++|+++|+++++.++. ++||+|+++.+.|++....+..+ ...|.
T Consensus 52 ~~y~R~~~p~~~~Le~~lA~l~g~~-~~-v~~~sG~~Ai~~~l~all----~pGD~Vvv~~p~Y~~t~~~~~~~~~~~g~ 125 (405)
T PRK08776 52 YDYTRSGNPTRDLLGEALAELEGGA-GG-VITATGMGAINLVLNALL----QPGDTLVVPHDAYGGSWRLFNALAKKGHF 125 (405)
T ss_pred CcccCCCChHHHHHHHHHHHHhCCC-ce-EEEcCHHHHHHHHHHHHh----CCCCEEEEccCCchHHHHHHHHHHHhcCc
Confidence 3455555567788999999999974 34 556666899999999987 89999999999999866555443 55688
Q ss_pred EEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHhcCCEEEEecccccccccccCCCCCccE
Q psy15216 112 RVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDL 191 (2602)
Q Consensus 112 ~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~~g~~livD~a~a~g~~~~dl~~~~~D~ 191 (2602)
+++.++. .|+++++++++++|++|++++|+||||.+.|+++|+++|+++|+++++|++|+.+.....+ .+++|+
T Consensus 126 ~v~~v~~-----~d~~~l~~~i~~~tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIvD~a~a~~~~~~pl-~~gaDi 199 (405)
T PRK08776 126 ALITADL-----TDPRSLADALAQSPKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNTFLSPALQKPL-EFGADL 199 (405)
T ss_pred EEEEECC-----CCHHHHHHhcCcCCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCCcccccCCcc-cccCCE
Confidence 8888864 3789999999999999999999999999999999999999999999999999877643333 468899
Q ss_pred EEeccccccC-CCC--cEEEEEe-cCCCCcccceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy15216 192 MSFSAHKIYG-PKG--IGALYIR-RNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQK 267 (2602)
Q Consensus 192 ~~~S~~K~~G-p~G--~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~ 267 (2602)
+++|+||+++ +.+ .|+++.+ +++.+++..... ....+++....+.+..+++ +++.+.++..+++.
T Consensus 200 vv~S~tK~l~g~~~~~~G~vv~~~~~l~~~l~~~~~-------~~g~~~s~~~a~l~~~gl~----tl~~r~~~~~~na~ 268 (405)
T PRK08776 200 VLHSTTKYINGHSDVVGGAVVARDAELHQQLVWWAN-------ALGLTGSPFDAFLTLRGLR----TLDARLRVHQENAD 268 (405)
T ss_pred EEecCceeecCCCCceEEEEEeCCHHHHHHHHHHHH-------hcCCCCCHHHHHHHHhhhC----cHHHHHHHHHHHHH
Confidence 9999999665 444 5777665 334344432111 1112344444443433333 45677778888888
Q ss_pred HHHHHHhhccCceEE-eCC--CCC-----------CCCceEEEEEccc--ChhHHHHHhC--CeEEcccccCC----CC-
Q psy15216 268 RLYNGLMESIEEIYI-NGD--MNN-----------RIPHNLNISFNFI--EGESLLMAIK--DIAVSSGSACT----SA- 324 (2602)
Q Consensus 268 ~l~~~L~~~~~g~~l-~~~--~~~-----------~~~~~~~~~~~~~--~~~~~~~~L~--gI~v~~g~~~~----~~- 324 (2602)
.+.+.|++ .|.+.- .-| +++ ....++.|.+.+. ....+++.|+ .+..+-|...+ +.
T Consensus 269 ~la~~L~~-~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~~f~~~l~l~~~~~s~G~~~sl~~~p~~ 347 (405)
T PRK08776 269 AIAALLDG-HAAVNQVYYPGLASHPGHALAARQQKGFGAMLSFELEGGEAAVRAFVDGLRYFTLAESLGGVESLIAHPAS 347 (405)
T ss_pred HHHHHHHc-CCCeeEEECCCCCCCcCHHHHHhcCCCCceEEEEEEcCCHHHHHHHHHhCCcceEccCCCCCceEEECCcc
Confidence 88888876 566542 211 111 1122344444321 1245666663 44444443222 10
Q ss_pred --C-CChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 325 --S-LEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 325 --~-~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
| ..+.......|++ ++.||+|+|..+.++-++.+-++|++
T Consensus 348 ~~h~~~~~~~~~~~gi~----~~liR~svGlE~~~dli~dl~~al~~ 390 (405)
T PRK08776 348 MTHAAMTAEARAAAGIS----DGLLRLSVGIESAEDLLIDLRAGLAR 390 (405)
T ss_pred cccccCCHHHHHhcCCC----CCeEEEEeCcCCHHHHHHHHHHHHHH
Confidence 1 1112233456665 37899999987766666666666664
|
|
| >PRK01773 hscB co-chaperone HscB; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.2e-20 Score=200.83 Aligned_cols=89 Identities=35% Similarity=0.467 Sum_probs=82.4
Q ss_pred ccccccccccchhhhHHHHHHHHHHHHHHHhhcChhhHHHHHHHhc-CCCCCCccccCCCHHHHHHHHHHHHHHHhhhcc
Q psy15216 1931 LYFNDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKLN-GIDLNTKLNLNFSHDFLEQQMKWRETLSIIKNK 2009 (2602)
Q Consensus 1931 ~~l~~~~~~~~~~~~~~~~~~~~~~n~ay~~l~~p~~r~~y~l~~~-g~~~~~~~~~~~~~~~lm~~~e~~E~l~~~~~~ 2009 (2602)
.+|||+|+..++.||++|++||++||+||+|||||++||+|||+++ |+++..++.+.+||+|||+||||||+|+++.+.
T Consensus 31 ~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~L~~g~~~~~e~~~~~d~~fLme~ME~rE~lee~~~~ 110 (173)
T PRK01773 31 SLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIALNTGEQQNLEEKSTQDMAFLMQQMEWREQLEEIEQQ 110 (173)
T ss_pred HhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHHhccCCCCCcccccCCCHHHHHHHHHHHHHHHhhccc
Confidence 6899999999999999999999999999999999999999999999 999888889999999999999999999999877
Q ss_pred hhHHHHhhhc
Q psy15216 2010 KDKVKFMALL 2019 (2602)
Q Consensus 2010 ~~~~~~~~~~ 2019 (2602)
.|...+.+|.
T Consensus 111 ~d~~~L~~l~ 120 (173)
T PRK01773 111 QDEDALTAFS 120 (173)
T ss_pred CCHHHHHHHH
Confidence 7766665544
|
|
| >TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.9e-18 Score=222.04 Aligned_cols=318 Identities=14% Similarity=0.111 Sum_probs=207.2
Q ss_pred CCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHh---CCCCCcEEEeCCHHHHHHHHHHhhhhhhc
Q psy15216 1403 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI---YADPREIIWTSGATESNNLAIKGAAHFYK 1479 (2602)
Q Consensus 1403 ~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~---g~~~~~iv~t~gaT~al~~al~~l~~~~~ 1479 (2602)
.+.++.+.+++.+.+++.........| .......++|+++++++ ++++++|++|+|+++++..+ ..+.
T Consensus 45 ~~~~~~v~~~~~~~~~~~~~~~~~~~Y----~p~~g~~~lr~aia~~~~~~~~~~d~I~it~Ga~~al~~l-~~l~---- 115 (402)
T TIGR03542 45 QPLPASVIEAFHNAVDELASEETFRGY----GPEQGYPFLREAIAENDYRGRIDPEEIFISDGAKCDVFRL-QSLF---- 115 (402)
T ss_pred CCCCHHHHHHHHHHHhcccccccccCC----CCCCCCHHHHHHHHHHHHhcCCCHHHEEECCCcHHHHHHH-HHhc----
Confidence 456788899998887653111100001 11123567899999876 67889999999999999875 4444
Q ss_pred cCCCEEEEcCCCCcchHHHHHHHHhCCc-----------EEEEeccCCC--CCcChhHHHhhccCCceEEEEeccccccc
Q psy15216 1480 KRGKHIITVQTEHKSVLDSIRKLENDGF-----------RVTYLKPKNN--GLITLSQLEEKICSDTILVSVMLVNNEIG 1546 (2602)
Q Consensus 1480 ~~gd~Vlv~~~~~~s~~~~~~~~~~~G~-----------~v~~v~~~~~--~~id~d~l~~~i~~~t~lv~l~~~~n~tG 1546 (2602)
.+||+|++++|+|+.+...++.. |+ +++.++.+.. +.+|++. .+++++|++++|+||||
T Consensus 116 ~~gd~Vlv~~P~y~~~~~~~~~~---g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~i~l~nP~NPTG 187 (402)
T TIGR03542 116 GSDNTVAVQDPVYPAYVDSNVMA---GRAGVLDDDGRYSKITYLPCTKENNFIPDLPE-----EPKIDIIYLCSPNNPTG 187 (402)
T ss_pred CCCCEEEEeCCCCcchHHHHHHc---CCccccccccccceEEEeecchhhCCCCCccc-----cCCceEEEEeCCCCCCC
Confidence 68999999999999988777665 77 8888887643 3333221 25789999999999999
Q ss_pred cccC---hHHHHHHhhhcCCEEEEecccccC----cccccCCCC----CccEEEEccccccCCCc--eEEEEEecCCCCc
Q psy15216 1547 VIQP---ILEIGELCRSKGVIFHCDAAQAVG----KIDINIQNY----KVDLMSFSAHKIYGPKG--IGALYIRRNPRTR 1613 (2602)
Q Consensus 1547 ~~~~---l~~I~~ia~~~gi~vivD~a~~~g----~~~~~l~~~----~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~ 1613 (2602)
.+++ +++|+++|++||+++|+|++++.- ..+..+... ..-+++.||+|.+|++| +||++++++++..
T Consensus 188 ~~~s~~~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~pGlRiG~~i~~~~l~~~ 267 (402)
T TIGR03542 188 TVLTKEQLKELVDYANEHGSLILFDAAYSAFISDPSLPHSIFEIPGAKECAIEFRSFSKTAGFTGVRLGWTVVPKELTYA 267 (402)
T ss_pred ccCCHHHHHHHHHHHHHcCeEEEEEchhhhhccCCCCCcchhhCCCCcccEEEEecCccccCCCCcceEEEEecHHHhhc
Confidence 9999 788899999999999999998631 111222111 12366789999998888 8999998775511
Q ss_pred ----cccccccCCccccCCCCCcchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCc
Q psy15216 1614 ----IEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRL-ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPH 1688 (2602)
Q Consensus 1614 ----l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~-~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~ 1688 (2602)
+...+. ........+.+...+.++..++.. ......+.++.+++.++++.+.|.+ .++.+..+.. ..
T Consensus 268 ~~~~~~~~~~---~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~--~~~~~~~~~~---~~ 339 (402)
T TIGR03542 268 DGHSVIQDWE---RRQCTKFNGASYPVQRAAEAAYAGEGLQPILEAISYYMENARILRKALEA--AGFKVYGGEH---AP 339 (402)
T ss_pred chhhHHHHHH---HHhhhcccCCCHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHh--cCceecCCCc---ee
Confidence 111100 000011123444444444444431 1123445567778888889888877 3555442211 11
Q ss_pred eEEEEEec-CCcHHHHHhc---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1689 NLNISFNF-IEGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1689 ~~~~~~~~-~~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
...+.++. .+..++...+ +||.+++|..|... ..+++||++.. +.++++.+++.|++
T Consensus 340 f~~v~l~~~~~~~~l~~~l~~~~gv~v~pg~~f~~~-----------------~~~~iRis~~~--~~~~l~~~l~~l~~ 400 (402)
T TIGR03542 340 YLWVKTPEGISSWDFFDFLLYQYHVVGTPGSGFGPS-----------------GEGFVRFSAFG--KRENIVEACERIKE 400 (402)
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCEEEeCchhhCCC-----------------CCCEEEEEecC--CHHHHHHHHHHHHh
Confidence 22233332 2445666554 59999998876431 12799999753 78999999999875
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). |
| >TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.4e-18 Score=220.21 Aligned_cols=319 Identities=19% Similarity=0.159 Sum_probs=218.5
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCC
Q psy15216 1404 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK 1483 (2602)
Q Consensus 1404 ~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd 1483 (2602)
..++++++++.+.++....+++. +...........++++.+++++|.+ ..++++++++|+..++..+.. ..+++
T Consensus 59 ~~~p~v~~a~~~~~~~~~~~~~~--s~~~~g~~~~~~~Le~~la~~~g~~--~~l~~~sG~~an~~ai~~l~~--~~~~~ 132 (402)
T TIGR01821 59 GQHPEVLQAMHETLDKYGAGAGG--TRNISGTNIPHVELEAELADLHGKE--SALVFTSGYVANDATLATLAK--IIPGC 132 (402)
T ss_pred CCCHHHHHHHHHHHHHcCCCCcc--hhhhhCCcHHHHHHHHHHHHHhCCC--eEEEECchHHHHHHHHHHhhC--CCCCC
Confidence 56788999999999764322221 1211222445788999999999953 567777789999988887751 13688
Q ss_pred EEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhcc----CCceEEEEeccccccccccChHHHHHHhh
Q psy15216 1484 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKIC----SDTILVSVMLVNNEIGVIQPILEIGELCR 1559 (2602)
Q Consensus 1484 ~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~----~~t~lv~l~~~~n~tG~~~~l~~I~~ia~ 1559 (2602)
.|+.....|++....+... |+.+..++. .|++++++.++ +++++|++++++||+|.+.|+++|.++|+
T Consensus 133 ~v~~~~~~h~s~~~~~~~~---g~~~~~~~~-----~d~~~l~~~l~~~~~~~~~~v~~e~~~~~~G~~~~l~~i~~l~~ 204 (402)
T TIGR01821 133 VIFSDELNHASMIEGIRHS---GAEKFIFRH-----NDVAHLEKLLQSVDPNRPKIIAFESVYSMDGDIAPIEEICDLAD 204 (402)
T ss_pred EEEEcchHhHHHHHHHHHc---CCeEEEECC-----CCHHHHHHHHHhccCCCCeEEEEcCCCCCCCCccCHHHHHHHHH
Confidence 8888877888877666543 777665542 36777777775 36899999999999999999999999999
Q ss_pred hcCCEEEEecccccCcc-cc--cC-C--C--CCccEEEEccccccCCCceEEEEEecCCCCccccccccCCccccCCCCC
Q psy15216 1560 SKGVIFHCDAAQAVGKI-DI--NI-Q--N--YKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGT 1631 (2602)
Q Consensus 1560 ~~gi~vivD~a~~~g~~-~~--~l-~--~--~~~D~~v~S~~K~~gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt 1631 (2602)
+||+++++|++|+.|.. +. .. . . ..+|+++.|++|.+|+.| ||++.++++++.+.....+ ..+ .++
T Consensus 205 ~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g~~G-G~i~~~~~~~~~l~~~~~~----~~~-t~~ 278 (402)
T TIGR01821 205 KYGALTYLDEVHAVGLYGPRGGGIAERDGLMHRIDIIEGTLAKAFGVVG-GYIAASRKLIDAIRSYAPG----FIF-TTS 278 (402)
T ss_pred HcCCEEEEeCcccccccCCCCCccchhccCCCCCeEEEEechhhhccCC-ceeecCHHHHHHHHHhCcC----cee-cCc
Confidence 99999999999986642 11 00 0 1 136888899999888877 8888887766555422111 011 234
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEec-CCcHHHHHhc---C
Q psy15216 1632 LATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGESLLMAI---K 1707 (2602)
Q Consensus 1632 ~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~L---~ 1707 (2602)
.+...+++..++|+..... +...++..++++++.+.|.+ .++.+..+. ..+..+.++. ....++...| +
T Consensus 279 ~~~~~~aaa~aaL~~~~~~-~~~~~~~~~~~~~l~~~L~~--~g~~~~~~~----~~i~~i~~~~~~~a~~~~~~L~~~~ 351 (402)
T TIGR01821 279 LPPAIAAGATASIRHLKES-QDLRRAHQENVKRLKNLLEA--LGIPVIPNP----SHIVPVIIGDAALCKKVSDLLLNKH 351 (402)
T ss_pred CCHHHHHHHHHHHHHhhcC-HHHHHHHHHHHHHHHHHHHH--cCCCcCCCC----CCEEEEEeCCHHHHHHHHHHHHhcC
Confidence 5555666666888865543 55566677889999999987 355544321 1233333321 1234565554 4
Q ss_pred CEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1708 DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1708 gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
||.+++...+..+ ...+++|++++.++|.+|+++++++|++.
T Consensus 352 Gi~v~~~~~p~~~----------------~g~~~lRis~~~~~t~edi~~~~~~l~~~ 393 (402)
T TIGR01821 352 GIYVQPINYPTVP----------------RGTERLRITPTPAHTDKMIDDLVEALLLV 393 (402)
T ss_pred CEEEEeECCCCCC----------------CCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 8998864432211 11267999999999999999999999874
|
This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives. |
| >TIGR03801 asp_4_decarbox aspartate 4-decarboxylase | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.2e-17 Score=216.63 Aligned_cols=279 Identities=14% Similarity=0.118 Sum_probs=187.0
Q ss_pred cEEEeCCHHHHHHHHHHhhhh-hhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCC--C-----CCcChhHHHh
Q psy15216 1456 EIIWTSGATESNNLAIKGAAH-FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--N-----GLITLSQLEE 1527 (2602)
Q Consensus 1456 ~iv~t~gaT~al~~al~~l~~-~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~-----~~id~d~l~~ 1527 (2602)
+|++|+|+++|+..++.++.. ..++|||+|+++.|.|+.|....... ..|++++.++.++ + +.+|.+++++
T Consensus 157 ~V~it~Gat~al~~~~~~l~~~~ll~pGD~Vlv~~P~y~~y~~~~~l~-~~g~~vv~i~~~~~~~~g~~~~~~d~~~l~~ 235 (521)
T TIGR03801 157 DLFAVEGGTAAMCYIFDSLKANELLKKGDKIALMTPIFTPYLEIPELP-RYDFEVVRIKADEMTEDGTHTWQYPDKELEK 235 (521)
T ss_pred eEEEeCCHHHHHHHHHHHHhHhhcCCCCCEEEEeCCCcHHHHHHHHHh-cCCcEEEEeecccccccccccCCCCHHHHHH
Confidence 799999999999999887311 11489999999999999988766554 3467888887653 2 6799999999
Q ss_pred hccCCceEEEEeccccccccccC---hHHHHHHhhhc--CCEEEEecccccCc-ccccCCC-C-CccEEEEccccccCCC
Q psy15216 1528 KICSDTILVSVMLVNNEIGVIQP---ILEIGELCRSK--GVIFHCDAAQAVGK-IDINIQN-Y-KVDLMSFSAHKIYGPK 1599 (2602)
Q Consensus 1528 ~i~~~t~lv~l~~~~n~tG~~~~---l~~I~~ia~~~--gi~vivD~a~~~g~-~~~~l~~-~-~~D~~v~S~~K~~gp~ 1599 (2602)
+++++++++++++|+||||.+++ +++|+++|++| ++++|+|++++.-. ...++.. . ..-+++.|++|.+|++
T Consensus 236 ~~~~~~kai~l~nP~NPTG~vls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~~~sl~~~~~~~vI~v~SfSK~fg~~ 315 (521)
T TIGR03801 236 LRDPSIKALFVVNPSNPPSVAMSDESIEKIVDIVANDRPDLMILTDDVYGTFVDDFRSLFAELPYNTIGVYSFSKYFGAT 315 (521)
T ss_pred hcCCCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEECCCchhhcccccchhhhCCCCEEEEEcchhhccCc
Confidence 99999999999999999999999 77788889886 99999999986311 1111111 1 1347788999999988
Q ss_pred c--eEEEEEecC-----CCCcc--------ccccccCC------------------ccccCCCCCcchhHHH--H---HH
Q psy15216 1600 G--IGALYIRRN-----PRTRI--------EAQIHGGG------------------HEYGLRSGTLATHQIV--G---MG 1641 (2602)
Q Consensus 1600 G--~G~l~~~~~-----~~~~l--------~~~~~g~~------------------~~~~~~~gt~~~~~~~--a---l~ 1641 (2602)
| +||++.+++ +++.+ ...+..-. .......| .+.+++. | +.
T Consensus 316 G~RlG~i~~~~~~v~d~li~~lp~~~~~~l~~ry~~~~~~p~~~~fidr~vadsr~v~~~~~~g-~s~p~Q~q~al~a~~ 394 (521)
T TIGR03801 316 GWRLGTIALHKDNIFDKLIAELPEEKKKELDKRYSSLTTEPRKLKFIDRLVADSRQVALNHTAG-LSTPQQVQMALFSLF 394 (521)
T ss_pred hhhhhhhhcCchHHHHHHHHhccHHHHHHHhhhhccccCChhhhhhHHHHHHHHHHHHHhccCC-CCcHHHHHHHHHHHH
Confidence 9 999999865 22221 11000000 00111122 3333333 2 32
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecC--------------------CcHH
Q psy15216 1642 EAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI--------------------EGES 1701 (2602)
Q Consensus 1642 ~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~--------------------~~~~ 1701 (2602)
++++......+..++.++++++.+.+.| |+.+.. ..+.+..+.+... +..+
T Consensus 395 all~~~~~y~~~~~~~~~~R~~~l~~~L-----g~~~~~----~~~~g~~Y~~~di~~~~~~~~~~~f~~~l~~~~~~~~ 465 (521)
T TIGR03801 395 ALMDKENAYKAETKDICRRREKLLFRGL-----GLPLQE----DPNDVAYYTLIDLEEWAEKNYGEEFSSYLKKNYSPVD 465 (521)
T ss_pred HHhccchhHHHHHHHHHHHHHHHHHHhc-----CCCCcC----CCCCeEEEEEeehHHHHHHhcchHHHHHHhccCCHHH
Confidence 3333323456677778888888888777 221110 0123333444322 2345
Q ss_pred HHHhc---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1702 LLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1702 ~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
++..| .+|.+.||..|+.+ .+++|+|+.. .+++++.++.++|++
T Consensus 466 ~~~~L~~e~gV~v~PG~~Fg~~------------------~~~vRisla~-l~~~~~~~~~~rl~~ 512 (521)
T TIGR03801 466 VLFRLAEETGIVLLPGGGFGGP------------------EWSVRVSLAN-LNEYDYAEIGRAIRK 512 (521)
T ss_pred HHHHHHHhCCEEEeCchhcCCC------------------CCeEEEEecC-CCHHHHHHHHHHHHH
Confidence 55555 69999999988653 2679999963 467899999999997
|
This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1). |
| >PRK09440 avtA valine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.6e-18 Score=224.97 Aligned_cols=302 Identities=16% Similarity=0.074 Sum_probs=193.6
Q ss_pred HHHHHHHHHHHh----C--CCCCcEEEeCCHHHHHHHHHHhcccc-cccCCCEEEE-cCCCCcccHHHHHHHHh-CCcEE
Q psy15216 43 IEKARNEVAQLI----Y--ADPREIIWTSGATESNNLAIKGAAHF-YKKRGKHIIT-VQTEHKSVLDSIRKLEN-DGFRV 113 (2602)
Q Consensus 43 ~~~~r~~lA~~~----g--~~~~~Iv~t~g~T~al~~~~~~l~~~-~~~~gd~Vlv-~~~~~~s~~~~~~~~~~-~G~~v 113 (2602)
..++|+++++++ | +++++|++|+|+++|+.+++.++... ...+||.|++ ..|+|+.+......... .+..+
T Consensus 76 ~~~LR~aia~~~~~~~g~~v~~~~I~it~Ga~~al~~~~~~l~~~~~~~~gd~v~i~~~P~y~~y~~~~~~~~~~~~~~~ 155 (416)
T PRK09440 76 KDELIEALAALLNERYGWNISPQNIALTNGSQSAFFYLFNLFAGRRADGSLKKILFPLAPEYIGYADAGLEEDLFVSYRP 155 (416)
T ss_pred CHHHHHHHHHHHHHHhCCCCChhhEEEccChHHHHHHHHHHHhccccCCCCCeEEEecCCCchhhHHHhhccCceeeccc
Confidence 345666666665 4 58889999999999999999988710 0025899999 69999998765443211 12222
Q ss_pred EEeccCC---CCccChHHHHhhccCCceEEEEecccCccccccc---HHHHHHHHHhcCCEEEEecccccccccc---cC
Q psy15216 114 TYLKPKN---NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQAVGKIDI---NI 184 (2602)
Q Consensus 114 ~~v~~~~---~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~---l~~I~~la~~~g~~livD~a~a~g~~~~---dl 184 (2602)
..++++. .+.+|+++++ +.++++++++++||||||.+++ +++|+++|++|++++|+|++|+.....+ +.
T Consensus 156 ~~~~~~~~~~~~~~d~~~l~--~~~~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~ 233 (416)
T PRK09440 156 NIELLPEGQFKYHVDFEHLH--IDEDTGAICVSRPTNPTGNVLTDEELEKLDALARQHNIPLLIDNAYGPPFPGIIFSEA 233 (416)
T ss_pred ccccccccccccCCCHHHcc--cCCCceEEEEecCCCCCCccCCHHHHHHHHHHHHHcCCcEEEeCCccccCCCcchhhc
Confidence 2333332 2468999997 4678899999999999999999 5567888999999999999996421111 11
Q ss_pred CC--CCccEEEeccccccCCCC--cEEEEEecCCCCcccceecCCCccccccccCcchhHHHHHHHHHHHH--HHhHH-H
Q psy15216 185 QN--YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLA--RIEMK-E 257 (2602)
Q Consensus 185 ~~--~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~--~~~~~-~ 257 (2602)
.. .+.-+++.||||+ +.+| +||+++++++++.+..... ....+++.+...++..+++.. ..... .
T Consensus 234 ~~~~~~~vI~~~SfSK~-~~pGlRiG~~i~~~~l~~~~~~~~~-------~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~ 305 (416)
T PRK09440 234 TPLWNPNIILCMSLSKL-GLPGVRCGIVIADEEIIEALSNMNG-------IISLAPGRLGPAIAAEMIESGDLLRLSETV 305 (416)
T ss_pred CccccCCeEEEeccccc-CCCcceEEEEeCCHHHHHHHHHHHH-------HhccCCCcHHHHHHHHHhccchHHHHHHHH
Confidence 11 1234778899995 7777 8999998877766654321 112345555555555666511 11222 2
Q ss_pred HHHHHHHHHHHHHHHHhhccCc--eEEeCCCCCCCCceEEEEEcc--cChhHHHHHh--CCeEEcccccCCCCCCChHHH
Q psy15216 258 ELKRILFLQKRLYNGLMESIEE--IYINGDMNNRIPHNLNISFNF--IEGESLLMAI--KDIAVSSGSACTSASLEPSYV 331 (2602)
Q Consensus 258 ~~~~~~~l~~~l~~~L~~~~~g--~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~ 331 (2602)
.+..+++.++.+.+.|.+.+++ +.+..+.. ...+++.++. .+..++...+ +||.+++|..|.++.
T Consensus 306 ~~~~~~~r~~~~~~~L~~~l~~~~~~~~~p~g---g~fiw~~~~~~~~~~~~~~~~l~~~gV~v~pg~~F~~~~------ 376 (416)
T PRK09440 306 IRPFYRQKVQLAIALLRRYLPDEPCLIHKPEG---AIFLWLWFKDLPITTEELYQRLKARGVLVVPGHYFFPGL------ 376 (416)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCeEEecCCC---ceEEEEECCCCCCCHHHHHHHHHHCCEEEechHhhCCCC------
Confidence 4555566666677777653332 44333322 1233333443 3456666665 799999998774320
Q ss_pred HHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 332 LRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 332 ~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
+.......+++||+++. ++++++.++++|++.
T Consensus 377 ----~~~~~~~~~~iRis~~~--~~~~l~~~i~~l~~~ 408 (416)
T PRK09440 377 ----DEDWPHAHQCIRMNYVQ--DDEEIEKGIAILAEE 408 (416)
T ss_pred ----ccccCCcCceEEEEecC--CHHHHHHHHHHHHHH
Confidence 00000012689999973 789999999999864
|
|
| >PLN02822 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.8e-18 Score=220.77 Aligned_cols=324 Identities=15% Similarity=0.094 Sum_probs=222.1
Q ss_pred CCCHHHHHHHHHHHhhcc-CCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCC
Q psy15216 1404 PIDPRVVDKMIPYLRVQF-GNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRG 1482 (2602)
Q Consensus 1404 ~~~~~v~eal~~~l~~~~-~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~g 1482 (2602)
..++.+.+++.+.++... ++.++ ...+.......+++++|+++++.+ +.|++++|++ ++..++.++. ++|
T Consensus 123 ~~~~~i~ea~~~al~~~G~g~~g~---r~~yg~~~~~~~Lee~La~~~~~~-~~i~~s~G~~-a~~sai~a~~----~~g 193 (481)
T PLN02822 123 IGNEKIKESCTSALEKYGVGSCGP---RGFYGTIDVHLDCETKIAKFLGTP-DSILYSYGLS-TIFSVIPAFC----KKG 193 (481)
T ss_pred CCCHHHHHHHHHHHHHhCCCCccc---CccccCHHHHHHHHHHHHHHhCCC-CEEEECCHHH-HHHHHHHHhC----CCC
Confidence 468899999999998732 22221 112334567899999999999964 6788887776 6788888876 899
Q ss_pred CEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCC--CCCcChhHHHhhc--cCCc-eEEEEeccccccccccChHHHHHH
Q psy15216 1483 KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKI--CSDT-ILVSVMLVNNEIGVIQPILEIGEL 1557 (2602)
Q Consensus 1483 d~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~id~d~l~~~i--~~~t-~lv~l~~~~n~tG~~~~l~~I~~i 1557 (2602)
|.|++....|.++...+... |.++++++.++ +...+++++++.. ++++ ++|++.++++++|.+.|+++|.++
T Consensus 194 d~Ii~d~~~H~s~~~~~~ls---~~~~~~~~~nd~~~l~~~l~~~~~~~~~~~~~~~~Ivve~i~~~~G~i~~L~~i~~l 270 (481)
T PLN02822 194 DIIVADEGVHWGIQNGLYLS---RSTIVYFKHNDMESLRNTLEKLTAENKRKKKLRRYIVVEAIYQNSGQIAPLDEIVRL 270 (481)
T ss_pred CEEEEeCCccHHHHHHHHHc---CCeEEEECCCCHHHHHHHHHHHhhhhcccCCCcEEEEEecCCCCCCCccCHHHHHHH
Confidence 99999999888876666555 78888887552 1112233333222 1345 799999999999999999999999
Q ss_pred hhhcCCEEEEecccccCccc---------ccCCCCCccEEEEccccccCCCceEEEEEecCCCCccccccccCCccccCC
Q psy15216 1558 CRSKGVIFHCDAAQAVGKID---------INIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLR 1628 (2602)
Q Consensus 1558 a~~~gi~vivD~a~~~g~~~---------~~l~~~~~D~~v~S~~K~~gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~ 1628 (2602)
|++||+++|+|++|+.|... +++....+|+++.|++|.+|+.| ||+++++++++.++.... ....
T Consensus 271 ~~k~~~~LIvDEa~s~gvlG~~G~G~~e~~~v~~~~~dii~~s~sKalg~~G-G~i~g~~~ii~~~~~~~~-----~~~f 344 (481)
T PLN02822 271 KEKYRFRVLLDESNSFGVLGKSGRGLSEHFGVPIEKIDIITAAMGHALATEG-GFCTGSARVVDHQRLSSS-----GYVF 344 (481)
T ss_pred HHHcCCEEEEECCccccccCCCCCChHHHcCCCCCCCeEEEecchhhhhhCC-eEEEcCHHHHHHHHhcCC-----ceee
Confidence 99999999999999866432 22222357899999999888888 999998877765542211 1111
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecC------C---c
Q psy15216 1629 SGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI------E---G 1699 (2602)
Q Consensus 1629 ~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~------~---~ 1699 (2602)
+++.+.....|..++|+.... ..+..++++++++++++.|.+ .+|+.+..+.. ..+..+.++.. + .
T Consensus 345 sa~lPp~~~~Aa~~aL~~l~~-~~~~~~~l~~~~~~l~~~L~~-~~g~~~~~~~~---spi~~l~l~~~~~~~~~~~~~~ 419 (481)
T PLN02822 345 SASLPPYLASAAITAIDVLED-NPSVLAKLKENIALLHKGLSD-IPGLSIGSNTL---SPIVFLHLEKSTGSAKEDLSLL 419 (481)
T ss_pred ccccCHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHh-cCCcccCCCCC---CCEEEEEeCCCcccccchHHHH
Confidence 233333444444467775543 367888999999999999987 56766643322 22333444321 1 1
Q ss_pred HHHHHhc---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1700 ESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1700 ~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
.++...| +||.+.++...... ......++|++++..+|.+||++++++|++
T Consensus 420 ~~~~~~Ll~e~GV~v~~~~~~~~~--------------~~~~~~~lRi~is~~~t~edI~~~~~~l~~ 473 (481)
T PLN02822 420 EHIADRMLKEDSVLVVVSKRSTLD--------------KCRLPVGIRLFVSAGHTESDILKASESLKR 473 (481)
T ss_pred HHHHHHHHhcCCEEEEeeCCCCcC--------------CCCCCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 3455554 58999866332110 000124699999988999999999999987
|
|
| >TIGR03419 NifU_clost FeS cluster assembly scaffold protein NifU, Clostridium type | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.1e-19 Score=187.87 Aligned_cols=91 Identities=60% Similarity=1.029 Sum_probs=85.7
Q ss_pred hhhhhhhhhcCCCCcCcccCCCCcceeeeecCCCCccEEEEEEEEcCCCcEEeeeeeccccchhHhhHHHHHHHHcCCCh
Q psy15216 1771 YSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKTYGCGSAIASSSLVTEWVKGKTL 1850 (2602)
Q Consensus 1771 y~~~i~dh~~~p~~~g~~~~~~~~~~~~~~~~~~cgd~~~~~~~~~~~~~i~~~~~~~~gc~~~~a~~s~~~~~~~g~~~ 1850 (2602)
|+++++|||+||+|.|.+++++ +.++.+||.|||.|+||++|+ +|+|+|++|+++||++++||+||++|+++|||+
T Consensus 1 Y~~~il~~~~np~~~g~l~~~~---~~~~~~np~CGD~i~l~l~i~-~~~I~d~~f~~~GC~is~Asas~~~e~i~Gk~l 76 (121)
T TIGR03419 1 YSEKVMDHFMNPRNVGEIENAD---GVGEVGNPKCGDIMKIFLKVE-DDIIKDVKFKTFGCGAAIASSSMATEMIKGKTL 76 (121)
T ss_pred ChHHHHHHHhCCCCCCCCCCCC---eEEEeCCCCCccEEEEEEEEc-CCEEEEEEEEEeccHHHHHHHHHHHHHHcCCCH
Confidence 8999999999999999999887 789999999999999999995 789999999999999999999999999999999
Q ss_pred hhhhcccccchhhhh
Q psy15216 1851 DEAMSIKNTDIAEEL 1865 (2602)
Q Consensus 1851 ~~~~~i~~~~i~~~l 1865 (2602)
+||..++...+...|
T Consensus 77 ~ea~~i~~~~i~~~l 91 (121)
T TIGR03419 77 EEAWELTNKAVAEAL 91 (121)
T ss_pred HHHHHhhhHHHHHHH
Confidence 999999987776654
|
NifU and NifS form a pair of iron-sulfur (FeS) cluster biosynthesis proteins much simpler than the ISC and SUF systems. Members of this protein family are a distinct group of NifU-like proteins, found always to a NifS-like protein and restricted to species that lack a SUF system. Typically, NIF systems service a smaller number of FeS-containing proteins than do ISC or SUF. Members of this particular branch typically are found, almost half the time, near the mnmA gene, involved in the carboxymethylaminomethyl modification of U34 in some tRNAs (see GenProp0704). While other NifU proteins are associated with nitrogen fixation, this family is not. |
| >PRK07503 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.9e-18 Score=217.53 Aligned_cols=310 Identities=15% Similarity=0.124 Sum_probs=203.6
Q ss_pred cchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHH-HHHhCCc
Q psy15216 33 HIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIR-KLENDGF 111 (2602)
Q Consensus 33 ~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~-~~~~~G~ 111 (2602)
+.+++...+..+++++.+++++|++ ..++++|++.|+.+++.++. ++||+|+++.+.|+....... .+...|+
T Consensus 57 ~~y~r~~~p~~~~le~~lA~l~g~~--~~i~~~sG~~Al~~~l~~ll----~~Gd~Viv~~~~y~~t~~~~~~~~~~~G~ 130 (403)
T PRK07503 57 HFYSRISNPTLALLEQRMASLEGGE--AAVALASGMGAITATLWTLL----RPGDEVIVDQTLYGCTFAFLHHGLGEFGV 130 (403)
T ss_pred ceeeCCCCchHHHHHHHHHHHhCCC--cEEEEcCHHHHHHHHHHHHc----CCCCEEEEccCccchHHHHHHHHHhhCCE
Confidence 4445445567889999999999985 34667788899999998876 899999999999987655443 3456799
Q ss_pred EEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHhcCCEEEEecccccccccccCCCCCccE
Q psy15216 112 RVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDL 191 (2602)
Q Consensus 112 ~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~~g~~livD~a~a~g~~~~dl~~~~~D~ 191 (2602)
++++++.+ |+++++++++++|++|++++|+||||.+.|+++|.++|+++|+++|+|++++.+.....+ .+++|+
T Consensus 131 ~v~~vd~~-----d~~~l~~~i~~~tklV~le~p~NPtG~~~di~~I~~la~~~gi~lIvD~a~a~~~~~~~l-~~g~Di 204 (403)
T PRK07503 131 TVRHVDLT-----DPAALKAAISDKTRMVYFETPANPNMRLVDIAAVAEIAHGAGAKVVVDNTYCTPYLQRPL-ELGADL 204 (403)
T ss_pred EEEEeCCC-----CHHHHHHhcCccCcEEEEeCCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcccccCCch-hhCCCE
Confidence 99999864 799999999999999999999999999999999999999999999999999876543333 367899
Q ss_pred EEeccccccCCCC---cEEEEEecCCCCcccceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy15216 192 MSFSAHKIYGPKG---IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKR 268 (2602)
Q Consensus 192 ~~~S~~K~~Gp~G---~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~ 268 (2602)
+++|++|++|++| .|+++.+++++++++.... .......++....+.+...|+ .+..+.+++.+++..
T Consensus 205 ~v~S~tK~l~g~gd~~gG~v~~~~~l~~~l~~~~~-----~~~~g~~~s~~~a~l~l~~L~----tl~~r~~~~~~na~~ 275 (403)
T PRK07503 205 VVHSATKYLGGHGDITAGLVVGGKALADRIRLEGL-----KDMTGAVMSPFDAFLLMRGLK----TLALRMDRHCASAQA 275 (403)
T ss_pred EEccccccccCCCceeEEEEEcCHHHHHHHHhhhH-----HhCcCCCCCHHHHHHHHcCcc----hHHHHHHHHHHHHHH
Confidence 9999999887765 6888877766655542110 011112333333332323333 234455556677777
Q ss_pred HHHHHhhccCceEEe-CCC--CCC---------CCceEEEEEccc-C---hhHHHHHhC--CeEEcccccCCC---C---
Q psy15216 269 LYNGLMESIEEIYIN-GDM--NNR---------IPHNLNISFNFI-E---GESLLMAIK--DIAVSSGSACTS---A--- 324 (2602)
Q Consensus 269 l~~~L~~~~~g~~l~-~~~--~~~---------~~~~~~~~~~~~-~---~~~~~~~L~--gI~v~~g~~~~~---~--- 324 (2602)
+.+.|.+ .|.+..+ -|. ++. ......++|... + ...++..|+ ....+-|...+- +
T Consensus 276 ~a~~L~~-~p~v~~V~~P~l~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~l~l~~~~~slG~~~sl~~~~~~~ 354 (403)
T PRK07503 276 VAEWLAR-HPAVELVHYPGLPSFAQHALAQRQMALPGGMIAFELKGGIAAGRRFMNALQLFARAVSLGDAESLAQHPASM 354 (403)
T ss_pred HHHHHHh-CCCccEEECCCCCCCccHHHHHHhCCCCCceEEEEECCCHHHHHHHHHhCCcceeecccCCCCccCcCCCCC
Confidence 7777766 5655422 111 110 011233444321 1 234555542 333333322211 0
Q ss_pred -C-CChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 325 -S-LEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 325 -~-~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
| ..+.......|++ ++.||+|+|..+.++-++.+.++|+.
T Consensus 355 ~h~~~~~~~~~~~gi~----~~liR~svGlE~~~dl~~dl~~Al~~ 396 (403)
T PRK07503 355 THSTYTPEERAEHGIS----EGLVRLSVGLEDVADILADLAQALDA 396 (403)
T ss_pred ccccCCHHHHHhcCCC----CCeEEEEEecCCHHHHHHHHHHHHHH
Confidence 0 0111223456665 37899999987766666666666664
|
|
| >PRK06460 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.2e-18 Score=215.17 Aligned_cols=308 Identities=15% Similarity=0.119 Sum_probs=198.4
Q ss_pred CcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcc-cHHHHHHHHhCC
Q psy15216 32 NHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKS-VLDSIRKLENDG 110 (2602)
Q Consensus 32 ~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s-~~~~~~~~~~~G 110 (2602)
.|.+++...+..+++++++|+++|+++ .+++ +|+++|+..++.++. ++||+|+++.+.|+. +......++..|
T Consensus 36 ~~~y~r~~~p~~~~L~~~lA~l~g~~~-~v~~-~sG~~ai~~~l~al~----~~Gd~Vl~~~~~~~~ty~~~~~~~~~~G 109 (376)
T PRK06460 36 KYRYSREANPTVLELTKKIVELENAEM-GVAF-SSGMGAISTTALALL----KPGNSVLVHRDMFGRSYRFFTDYLKNWG 109 (376)
T ss_pred CcceeCCCCccHHHHHHHHHHHhCCCc-EEEe-CCHHHHHHHHHHHHh----CCCCEEEEecCCcCcHHHHHHHHHHhhC
Confidence 466777777889999999999999863 5555 555689999998887 899999999888754 433334456679
Q ss_pred cEEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHhcCCEEEEecccccccccccCCCCCcc
Q psy15216 111 FRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVD 190 (2602)
Q Consensus 111 ~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~~g~~livD~a~a~g~~~~dl~~~~~D 190 (2602)
++++.++.+. .+.+++.++++|++|++++|+||||.++|+++|.++|+++|+++++|++++.+.....+ ..++|
T Consensus 110 ~~v~~~~~~~-----~~~l~~~~~~~tklV~l~sp~NPtG~v~d~~~I~~la~~~g~~vivDea~~~~~~~~~l-~~~~d 183 (376)
T PRK06460 110 VNVDASNPGS-----DNIIEKAKSKRYDVVFVENITNPLLRVVDITELSKVCKENGSILIVDATFSTPINQKPL-ELGAD 183 (376)
T ss_pred cEEEEECCCC-----HHHHHHhcCCCceEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCcCccccCChh-hcCCC
Confidence 9999887542 34456666789999999999999999999999999999999999999999866322222 34689
Q ss_pred EEEeccccccCCCC---cEEEEEecCCCCcccceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy15216 191 LMSFSAHKIYGPKG---IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQK 267 (2602)
Q Consensus 191 ~~~~S~~K~~Gp~G---~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~ 267 (2602)
+++.|+||+++..| .|+++.++++++.+...... + ..+.+....+ .+++ ..++++...++..++++
T Consensus 184 ivv~S~sK~l~G~~~~~~G~~~~~~~l~~~l~~~~~~------~-g~~~~~~~a~---~~l~-~~~~l~~r~~~~~~n~~ 252 (376)
T PRK06460 184 IVVHSASKFLAGHNDVIAGLAAGYGKLLNVIDQMRRT------L-GTSLDPHAAY---LTLR-GIKTLKIRMDVINRNAE 252 (376)
T ss_pred EEEeecceeccCCCCceEEEEecCHHHHHHHHHHHHh------c-CCCCCHHHHH---HHHh-chhhHHHHHHHHHHHHH
Confidence 99999999765433 78999888776666543211 1 1112221111 2222 12345677778888888
Q ss_pred HHHHHHhhccCceE-EeCC--CCC-----------CCCceEEEEEcc--cChhHHHHHhC--CeEEcccccCC----C--
Q psy15216 268 RLYNGLMESIEEIY-INGD--MNN-----------RIPHNLNISFNF--IEGESLLMAIK--DIAVSSGSACT----S-- 323 (2602)
Q Consensus 268 ~l~~~L~~~~~g~~-l~~~--~~~-----------~~~~~~~~~~~~--~~~~~~~~~L~--gI~v~~g~~~~----~-- 323 (2602)
++.+.|++ .|.+. ++-| +++ .....+.|.+.+ .....+++.|+ .+.++-|..-+ +
T Consensus 253 ~l~~~L~~-~p~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~s~~~~~~~~~~~~~~~~l~~~~~~~s~Gg~~sl~~~p~~ 331 (376)
T PRK06460 253 QIAEFLEG-HPKVVKVYYPGLKSHVDYEIARRVLKGFGGVLSFEVNGGQESALKVMKSLKLIIPAQTLGGVNSVISHPAT 331 (376)
T ss_pred HHHHHHHc-CCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCcHHHHHHHHHhCCcceeccCCCCCceEEeCccc
Confidence 99998887 46553 2211 111 112233344432 12345666663 33333331111 1
Q ss_pred -CC-CChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHH
Q psy15216 324 -AS-LEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK 367 (2602)
Q Consensus 324 -~~-~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~ 367 (2602)
.| ..+.......|++ ++.||+|+|....++=+..+.++|.
T Consensus 332 ~~~~~~~~~~~~~~gi~----~~liR~svGlE~~~dl~~dl~~al~ 373 (376)
T PRK06460 332 MSHRTLSLEERKIVGIT----DSLLRLSVGIEDVNDLIEDLDRALS 373 (376)
T ss_pred cccccCCHHHHHhcCCC----CCeEEEEeccCCHHHHHHHHHHHHH
Confidence 00 1112233455665 3889999997554444444444443
|
|
| >TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.2e-17 Score=211.14 Aligned_cols=292 Identities=13% Similarity=0.093 Sum_probs=199.4
Q ss_pred CCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCE
Q psy15216 9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKH 88 (2602)
Q Consensus 9 ~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~ 88 (2602)
..|.+.++..+++.... + ..+..+++++++|+++|.+++++++++|+++|+..++.++. ++||+
T Consensus 34 ~~~~~~~~~~~~~~~~~---g---------~~~~~~~Le~~lA~~~g~~~e~ilv~~gg~~a~~~~~~al~----~~gd~ 97 (346)
T TIGR03576 34 GGFKIDEEDLELLETYV---G---------PAIFEEKVQELGREHLGGPEEKILVFNRTSSAILATILALE----PPGRK 97 (346)
T ss_pred CChhHHHHHHHHHHHhc---C---------CHHHHHHHHHHHHHHcCCCcceEEEECCHHHHHHHHHHHhC----CCCCE
Confidence 45677888878776531 1 12578899999999999988999999999999999999998 89999
Q ss_pred EEEcC---CCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccCCceEEEEecccCccccc---ccHHHHHHHH
Q psy15216 89 IITVQ---TEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVI---QPILEIGELC 162 (2602)
Q Consensus 89 Vlv~~---~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~---~~l~~I~~la 162 (2602)
|+++. +.|+++...++.. |+++... .++++++. .+++++|+++. ++++|.+ .|+++|+++|
T Consensus 98 Vli~~~d~p~~~s~~~~~~l~---ga~~~~~-------~~l~~l~~--~~~~~lIiitg-~s~~G~v~~~~~L~~i~~la 164 (346)
T TIGR03576 98 VVHYLPEKPAHPSIPRSCKLA---GAEYFES-------DELSELKK--IDGTSLVVITG-STMDLKVVSEEDLKRVIKQA 164 (346)
T ss_pred EEECCCCCCCchhHHHHHHHc---CCEEecc-------CCHHHHhh--CcCceEEEEEC-CCCCCcccCHHHHHHHHHHH
Confidence 99753 5777766666554 7775332 24555433 35688888865 6899998 4688899999
Q ss_pred HhcCCEEEEecccccccccc----cCCCCCccEEEecccccc-CCCCcEEEEEecCCCCcccceecCCCccccccccCcc
Q psy15216 163 RSKGVIFHCDAAQAVGKIDI----NIQNYKVDLMSFSAHKIY-GPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLA 237 (2602)
Q Consensus 163 ~~~g~~livD~a~a~g~~~~----dl~~~~~D~~~~S~~K~~-Gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~ 237 (2602)
++||+++++|+||+.+.... .....++|+++.|+||.+ |+. +||+++++++++.+...... +.. +.+
T Consensus 165 ~~~~~~livDEAy~~~~~~~~~~~~~~~~~~divv~s~SKalaG~r-~G~v~~~~~li~~l~~~~~~------~~~-s~~ 236 (346)
T TIGR03576 165 KSKEAIVLVDDASGARVRRLYGQPPALDLGADLVVTSTDKLMDGPR-GGLLAGRKELVDKIKSVGEQ------FGL-EAQ 236 (346)
T ss_pred HHcCCEEEEECCccccccccCCCCCHHHcCCcEEEeccchhccccc-eEEEEeCHHHHHHHHHhhcC------ccc-Ccc
Confidence 99999999999998764221 112335789999999954 677 59999999888777654321 112 345
Q ss_pred hhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcccChhHHHHHh---CCeE
Q psy15216 238 THQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI---KDIA 314 (2602)
Q Consensus 238 ~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L---~gI~ 314 (2602)
.+..+++.++|+... .+......+++++.+.+.+.. +.+..++. +++++.++..++.++...+ +||.
T Consensus 237 ~~~~~aa~~aL~~~~--~~~~~~~l~~r~~~~~~~l~~----~~~~~~~~----~f~~~~~~~~~~~~~~~~ll~~~gV~ 306 (346)
T TIGR03576 237 APLLAAVVRALEEFE--LSRIRDAFKRKEEVYLRLFDK----LNVERTPT----GFVIKGVEEEKLIEIGLDLLRNYGII 306 (346)
T ss_pred HHHHHHHHHHHhhcc--HHHHHHHHHHHHHHHHHHHHh----CCCCcCCC----eEEEEeCCCCCHHHHHHHHHHhCCEE
Confidence 556666677776321 244455666666666666643 22222211 2222333322233444444 7999
Q ss_pred EcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHH----HHHHHHHHHHh
Q psy15216 315 VSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEK----EIDFTIKLLKM 368 (2602)
Q Consensus 315 v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~e----did~li~~L~~ 368 (2602)
++++..+.. .++++|||++ +++ ++++++++|++
T Consensus 307 v~~~~~f~~------------------~~~~vRis~~---~~~~~~~~~~~~~~al~~ 343 (346)
T TIGR03576 307 TITAVGMPG------------------ASKTLRFDLA---AKDAERIGDDYLVEAVKD 343 (346)
T ss_pred EeCCcccCC------------------CCCeEEEEEe---cChHHhcCHHHHHHHHHh
Confidence 998765421 1389999998 344 79999999986
|
Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog. |
| >TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase | Back alignment and domain information |
|---|
Probab=99.79 E-value=4e-18 Score=218.38 Aligned_cols=306 Identities=13% Similarity=0.085 Sum_probs=202.1
Q ss_pred chhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHHHH-HhCCcE
Q psy15216 34 IYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDGFR 112 (2602)
Q Consensus 34 ~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~-~~~G~~ 112 (2602)
.+++...+..+++++++|++.|. +++++++|+++|+.+++.++. ++||+|+++.+.|+++...+..+ ...+++
T Consensus 44 ~Y~R~~~p~~~~le~~lA~l~g~--~~v~~~~gg~~Ai~~~l~all----~~GD~Vl~~~p~y~~~~~~~~~~~~~~~~~ 117 (382)
T TIGR02080 44 DYSRSGNPTRDLLQQALAELEGG--AGAVVTNTGMSAIHLVTTALL----GPDDLLVAPHDCYGGTYRLLNALAKKGCFR 117 (382)
T ss_pred cccCCCCchHHHHHHHHHHHhCC--CcEEEEcCHHHHHHHHHHHHc----CCCCEEEEcCCCcHHHHHHHHHHHhhcCeE
Confidence 44555556788999999999994 579999999999999999987 89999999999999876666554 455678
Q ss_pred EEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHhcCCEEEEecccccccccccCCCCCccEE
Q psy15216 113 VTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLM 192 (2602)
Q Consensus 113 v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~~g~~livD~a~a~g~~~~dl~~~~~D~~ 192 (2602)
+..++. .|+++++++++++|++|++++|+||||.+.|+++|.++||++|+++++|++|+.+....++ ..++|++
T Consensus 118 v~~~d~-----~d~~~l~~ai~~~tklV~l~~p~NPtG~~~dl~~I~~la~~~g~~vvvD~a~~~~~~~~pl-~~gaDiv 191 (382)
T TIGR02080 118 VLFVDQ-----GDEQALRAALAQKPKLVLIETPSNPLLRVVDIAKICHLAKAVGAVVVVDNTFLSPALQNPL-ALGADLV 191 (382)
T ss_pred EEEECC-----CCHHHHHHhcCcCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCcccccCCch-hhCCCEE
Confidence 877752 3799999999999999999999999999999999999999999999999999877543333 3578999
Q ss_pred Eecccccc-CCCC--cEEEEEe-cCCCCcccceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy15216 193 SFSAHKIY-GPKG--IGALYIR-RNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKR 268 (2602)
Q Consensus 193 ~~S~~K~~-Gp~G--~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~ 268 (2602)
+.|+||++ |+.+ .|+++++ +++.+++..... ....+.+....+.+...++ .+..+.+++.+++..
T Consensus 192 v~S~sK~l~G~~~~~~G~i~~~~~~~~~~l~~~~~-------~~g~~~sp~~a~l~lr~l~----tl~~R~~~~~~na~~ 260 (382)
T TIGR02080 192 LHSCTKYLNGHSDVIAGAVIAKDPQVAEELAWWAN-------NLGVTGGAFDSYLTLRGLR----TLVARMRLQQRNAQA 260 (382)
T ss_pred EeecceeccCCCCceeEEEEeCCHHHHHHHHHHHH-------ccCCCCCHHHHHHHHcccc----hHHHHHHHHHHHHHH
Confidence 99999955 5666 6777764 444444432211 1122333333333323333 234445566677777
Q ss_pred HHHHHhhccCceE-EeCC--CCC-----------CCCceEEEEEccc--ChhHHHHHh--CCeEEcccccCC----CC--
Q psy15216 269 LYNGLMESIEEIY-INGD--MNN-----------RIPHNLNISFNFI--EGESLLMAI--KDIAVSSGSACT----SA-- 324 (2602)
Q Consensus 269 l~~~L~~~~~g~~-l~~~--~~~-----------~~~~~~~~~~~~~--~~~~~~~~L--~gI~v~~g~~~~----~~-- 324 (2602)
+.+.|++ .|.+. ++-| +++ .....+.|.+.+. ....+++.| .++.++-|...+ +.
T Consensus 261 ~a~~L~~-~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~~f~~~l~~~~~~~s~G~~~sl~~~p~~~ 339 (382)
T TIGR02080 261 IVEYLQT-QPLVKKIYYPGLPDHPGHEIAARQQKGFGAMLSFELKGGEQTVRRFLGGLSLFTLAESLGGVESLIAHPATM 339 (382)
T ss_pred HHHHHHh-CCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEecCcHHHHHHHHHcCCcceEeccCCCCcceeECCCcc
Confidence 7777766 56554 2211 111 1123444444321 123566666 345555553222 10
Q ss_pred -C-CChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHH
Q psy15216 325 -S-LEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK 367 (2602)
Q Consensus 325 -~-~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~ 367 (2602)
| ..+.......|++ ++.||+|+|..+.++-++.+-++|+
T Consensus 340 ~~~~~~~~~~~~~gi~----~~liRlsvGlE~~~dl~~dl~~al~ 380 (382)
T TIGR02080 340 THAAMGPEARAEAGIS----DTLLRLSVGLEDADDLIADLEQGLR 380 (382)
T ss_pred CcccCCHHHHHhcCCC----cCeEEEEeccCCHHHHHHHHHHHHh
Confidence 1 0111223456665 3889999997554444444444443
|
This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine. |
| >TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.6e-18 Score=216.80 Aligned_cols=223 Identities=16% Similarity=0.213 Sum_probs=166.8
Q ss_pred hhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHH-HHHhCCcEE
Q psy15216 35 YGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIR-KLENDGFRV 113 (2602)
Q Consensus 35 ~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~-~~~~~G~~v 113 (2602)
+++...+..+++++.+++++|++ .+++++|+++|+.+++.++. ++||+|+++.+.|++....+. .+.+.|+++
T Consensus 48 y~r~~~p~~~~le~~la~l~g~~--~~~~~~sG~~Ai~~al~al~----~~Gd~Vl~~~~~~~~t~~~~~~~~~~~g~~v 121 (380)
T TIGR01325 48 YSRYANPTVAAFEERIAALEGAE--RAVATATGMSAIQAALMTLL----QAGDHVVASRSLFGSTVGFISEILPRFGIEV 121 (380)
T ss_pred eecCCCchHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHHh----CCCCEEEEecCCcchHHHHHHHHHHHhCCEE
Confidence 33334456889999999999974 67889999999999998887 799999999999987665554 346679999
Q ss_pred EEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHhcCCEEEEecccccccccccCCCCCccEEE
Q psy15216 114 TYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMS 193 (2602)
Q Consensus 114 ~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~~g~~livD~a~a~g~~~~dl~~~~~D~~~ 193 (2602)
++++.+ |+++++++++++|++|++++|+||+|.+.|+++|.++||++|+++++|++++.+.....+ ..++|+++
T Consensus 122 ~~v~~~-----d~~~l~~~i~~~tklV~le~p~np~g~~~dl~~I~~la~~~gi~livD~a~~~~~~~~pl-~~g~Divv 195 (380)
T TIGR01325 122 SFVDPT-----DLNAWEAAVKPNTKLVFVETPSNPLGELVDIAALAELAHAIGALLVVDNVFATPVLQQPL-KLGADVVV 195 (380)
T ss_pred EEECCC-----CHHHHHHhcCCCceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcccccCCch-hhCCCEEE
Confidence 998764 789999999999999999999999999999999999999999999999999765432222 45789999
Q ss_pred eccccccCCCC---cEEEEEecCCCCcccceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy15216 194 FSAHKIYGPKG---IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLY 270 (2602)
Q Consensus 194 ~S~~K~~Gp~G---~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~ 270 (2602)
+|+||+++++| .|+++.++++++.+...... ..++.+....+.+..+++. +..+.++..+.+.++.
T Consensus 196 ~S~sK~l~g~g~~~gG~vv~~~~~~~~l~~~~~~-------~g~~~~p~~a~~~l~~l~t----l~~r~~~~~~~a~~la 264 (380)
T TIGR01325 196 YSATKHIDGQGRVMGGVIAGSEELMAEVAVYLRH-------TGPAMSPFNAWVLLKGLET----LSLRMQKQFDSALAIA 264 (380)
T ss_pred eeccceecCCCCeEEEEEEeCHHHHHHHHHHHHh-------hCCCCCHHHHHHHHhccCc----HHHHHHHHHHHHHHHH
Confidence 99999887665 47888887766655533211 1122222222222233332 3445666677777777
Q ss_pred HHHhhccCceE
Q psy15216 271 NGLMESIEEIY 281 (2602)
Q Consensus 271 ~~L~~~~~g~~ 281 (2602)
+.|++ .|++.
T Consensus 265 ~~L~~-~p~v~ 274 (380)
T TIGR01325 265 EWLQA-QPQVQ 274 (380)
T ss_pred HHHHc-CCCcc
Confidence 77776 56554
|
This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis. |
| >PRK09472 ftsA cell division protein FtsA; Reviewed | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.3e-17 Score=216.02 Aligned_cols=196 Identities=15% Similarity=0.176 Sum_probs=147.9
Q ss_pred HHHHHHHHHHHHcCCceeEeechhHHHHHHhhhccCCCCceEEEEEeCCceEEEEEEEEeCCEEEEEEEecCCCCchhHH
Q psy15216 2175 IQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDF 2254 (2602)
Q Consensus 2175 ~qr~~l~~Aa~~AGl~~~~li~EP~AAAl~y~~~~~~~~~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~ 2254 (2602)
.+++ +.+|++.||+++..++.||.|+|.++... ...+..++|+|+||||||+++++ ++.+ .......+||++|
T Consensus 167 ~~~~-~~~a~~~aGl~v~~iv~ep~Aaa~a~l~~-~e~~~gv~vvDiGggtTdisv~~--~G~l---~~~~~i~~GG~~i 239 (420)
T PRK09472 167 MAKN-IVKAVERCGLKVDQLIFAGLASSYAVLTE-DERELGVCVVDIGGGTMDIAVYT--GGAL---RHTKVIPYAGNVV 239 (420)
T ss_pred HHHH-HHHHHHHcCCeEeeEEehhhHHHHHhcCh-hhhhcCeEEEEeCCCceEEEEEE--CCEE---EEEeeeechHHHH
Confidence 4444 45699999999999999999999988443 33456789999999999999996 3332 2333378999999
Q ss_pred HHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhccc------ceEEEEEEecCCceEEEEcCHHHHHHHHHHHHHHH
Q psy15216 2255 DYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQ------SSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNRT 2328 (2602)
Q Consensus 2255 D~~l~~~l~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~------~~~~~~i~~~~~~~~~~~itr~~fe~l~~~~~~~~ 2328 (2602)
++.|...+.- ....||++|+..... .+..+.++..++. ...+++|.+|.+++.+-++++
T Consensus 240 t~dIa~~l~i--------------~~~~AE~lK~~~g~~~~~~~~~~~~i~v~~~~~~-~~~~i~~~~l~~ii~~r~~ei 304 (420)
T PRK09472 240 TSDIAYAFGT--------------PPSDAEAIKVRHGCALGSIVGKDESVEVPSVGGR-PPRSLQRQTLAEVIEPRYTEL 304 (420)
T ss_pred HHHHHHHhCc--------------CHHHHHHHHHhcceeccccCCCCceeEecCCCCC-CCeEEcHHHHHHHHHHHHHHH
Confidence 9888755431 136899999765432 2334555433332 235889999999999966666
Q ss_pred HHHHH-------HHHHHcCCCccccceEEEEeCccchHHHHHHHHhhcCCcccC------------CCCccchhhhHHHH
Q psy15216 2329 ILLSS-------KALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLT------------SIDPDKAVVFGAAI 2389 (2602)
Q Consensus 2329 ~~~i~-------~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~~~------------~~~p~~aVa~GAa~ 2389 (2602)
.+.+. ..++++++....++.|+|+||+|++|.+++.+++.|+.++.. ..+|..++|.|.++
T Consensus 305 ~~~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f~~~vri~~P~~~~g~~~~~~~P~~ata~Gl~~ 384 (420)
T PRK09472 305 LNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFHTQVRIGAPLNITGLTDYAQEPYYSTAVGLLH 384 (420)
T ss_pred HHHHHHHHHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHhCCCeEEeCCcccCCChhhcCCcHHHHHHHHHH
Confidence 66665 455677877778899999999999999999999999754332 24899999999999
Q ss_pred HhH
Q psy15216 2390 QAN 2392 (2602)
Q Consensus 2390 ~a~ 2392 (2602)
++.
T Consensus 385 ~~~ 387 (420)
T PRK09472 385 YGK 387 (420)
T ss_pred Hhh
Confidence 985
|
|
| >TIGR01328 met_gam_lyase methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.79 E-value=9e-18 Score=216.15 Aligned_cols=308 Identities=17% Similarity=0.144 Sum_probs=204.1
Q ss_pred cchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHHH-HHhCCc
Q psy15216 33 HIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDGF 111 (2602)
Q Consensus 33 ~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~-~~~~G~ 111 (2602)
|.+++...+..+++++.+|+++|.+ ..++++|++.|+.+++.++. ++||+|+++.+.|++....+.. +...|+
T Consensus 51 ~~y~r~~~p~~~~le~~lA~l~g~~--~av~~~sG~~Ai~~~l~al~----~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~ 124 (391)
T TIGR01328 51 YIYSRLGNPTVSNLEGRIAFLEGTE--AAVATSSGMGAIAATLLTIL----KAGDHLISDECLYGCTFALLEHALTKFGI 124 (391)
T ss_pred CceeCCCCchHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHHh----CCCCEEEEecCcchHHHHHHHHHHhcCCe
Confidence 3444444556789999999999986 36788888899999998887 7999999999999876655544 356799
Q ss_pred EEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHhcCCEEEEecccccccccccCCCCCccE
Q psy15216 112 RVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDL 191 (2602)
Q Consensus 112 ~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~~g~~livD~a~a~g~~~~dl~~~~~D~ 191 (2602)
++++++.+ |+++++++++++|++|++++|+||+|.+.|+++|.++|+++|+++++|++++.+.....+ ..++|+
T Consensus 125 ~~~~vd~~-----d~e~l~~~i~~~tklV~le~p~Np~G~v~dl~~I~~la~~~gi~livD~a~a~~~~~~~~-~~g~Di 198 (391)
T TIGR01328 125 QVDFINMA-----IPEEVKAHIKDNTKIVYFETPANPTMKLIDMERVCRDAHSQGVKVIVDNTFATPMLTNPV-ALGVDV 198 (391)
T ss_pred EEEEECCC-----CHHHHHHhhccCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCchhccCCch-hcCCCE
Confidence 99999864 799999999999999999999999999999999999999999999999999877653333 457899
Q ss_pred EEeccccccCCCC---cEEEEEecCCCCcccceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy15216 192 MSFSAHKIYGPKG---IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKR 268 (2602)
Q Consensus 192 ~~~S~~K~~Gp~G---~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~ 268 (2602)
+++|++|.+|.+| .|+++.+++++++++.... .....+..+....+.+...++ .+..+.++..+++..
T Consensus 199 vv~S~sK~lgg~g~~~gG~v~~~~~li~~l~~~~~-----~~~~g~~l~~~~a~l~l~~L~----tl~~r~~~~~~na~~ 269 (391)
T TIGR01328 199 VVHSATKYIGGHGDVVAGLICGKAELLQQIRMVGI-----KDMTGSVISPFDAWLILRGLK----TLNIRMKRHSENAMK 269 (391)
T ss_pred EEccccccccCCCCceEEEEEcCHHHHHHHHHHHH-----HhCCCCCCCcHHHHHHHhCcC----cHHHHHHHHHHHHHH
Confidence 9999999887665 5888887776665543210 001111232222222222332 234556777888888
Q ss_pred HHHHHhhccCceEEeC-C--CCC-----------CCCceEEEEEcc--cChhHHHHHhC--CeEEcccccCC----CC--
Q psy15216 269 LYNGLMESIEEIYING-D--MNN-----------RIPHNLNISFNF--IEGESLLMAIK--DIAVSSGSACT----SA-- 324 (2602)
Q Consensus 269 l~~~L~~~~~g~~l~~-~--~~~-----------~~~~~~~~~~~~--~~~~~~~~~L~--gI~v~~g~~~~----~~-- 324 (2602)
+.+.|.+ .|++..+- | +++ .....+.|.+.+ ....++++.|+ .+..+-|...+ +.
T Consensus 270 la~~L~~-~p~v~~v~yp~l~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~f~~~l~~~~~~~s~G~~~sl~~~~~~~ 348 (391)
T TIGR01328 270 VAEYLKS-HPAVEKVYYPGFEDHPGHDIAAKQMRMGGGMITFELKGGFAGAKKLLNNLKLIRLAVSLGDAETLIQHPASM 348 (391)
T ss_pred HHHHHHh-CCCccEEECCCCCCCccHHHHHHhCCCCCceEEEEeCCCHHHHHHHHHhCCcceEecCCCCCcccCcCCCcc
Confidence 8888877 67654221 1 111 012234444432 11345666663 44455453322 10
Q ss_pred -CC-ChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHH
Q psy15216 325 -SL-EPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLL 366 (2602)
Q Consensus 325 -~~-~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L 366 (2602)
|. .+.-.....|+. ++.||+|+|....++-++.+-++|
T Consensus 349 ~~~~~~~~~~~~~gi~----~~liR~svGlE~~~dl~~dl~~al 388 (391)
T TIGR01328 349 THAVVPKEEREAAGIT----DGMIRLSVGLEDADDLIADLKQAL 388 (391)
T ss_pred ccccCCHHHHHhcCCC----CCeEEEEeCcCCHHHHHHHHHHHH
Confidence 00 011122345655 378999999754444344444444
|
This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine. |
| >PRK09028 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.5e-18 Score=220.47 Aligned_cols=300 Identities=12% Similarity=0.052 Sum_probs=198.3
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHH-HHHHhCCcEEEEeccC
Q psy15216 41 KAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSI-RKLENDGFRVTYLKPK 119 (2602)
Q Consensus 41 ~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~-~~~~~~G~~v~~v~~~ 119 (2602)
+..+.+++.+|++.+.. ++++++|+++|++.++.++. ++||+|+++++.|+++...+ ..+.+.|+++.+++..
T Consensus 61 pt~~~Le~~iA~le~~~--~~~~~~sG~~Ai~~~l~all----~~GD~Vvv~~~~Y~~t~~l~~~~l~~~Gi~v~~v~~~ 134 (394)
T PRK09028 61 PTHFAFQAAIVELEGGA--GTALYPSGAAAISNALLSFL----KAGDHLLMVDSCYEPTRDLCDKILKGFGIETTYYDPM 134 (394)
T ss_pred chHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHHh----CCCCEEEEECCCcHHHHHHHHHhhhhcceEEEEECCC
Confidence 34678999999998764 78999999999999999887 89999999999998876544 3446679999887643
Q ss_pred CCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHhcCCEEEEecccccccccccCCCCCccEEEeccccc
Q psy15216 120 NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKI 199 (2602)
Q Consensus 120 ~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~~g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K~ 199 (2602)
+.+.++++++++||+|++++|+||||.+.|+++|+++||++|+++++|++|+.+.. .+..++|+|+++.|.||+
T Consensus 135 -----~~e~l~~~l~~~TklV~lespsNPtg~v~dl~~I~~la~~~g~~lvvD~t~a~p~~-~~Pl~~GaDivv~S~tK~ 208 (394)
T PRK09028 135 -----IGEGIRELIRPNTKVLFLESPGSITMEVQDVPTLSRIAHEHDIVVMLDNTWASPIN-SRPFEMGVDISIQAATKY 208 (394)
T ss_pred -----CHHHHHHhcCcCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCcccccc-CCccccCceEEEEeCCeE
Confidence 46889999999999999999999999999999999999999999999999998753 333468999999999997
Q ss_pred cCCCC---cEEEEEecCCCCcccceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhc
Q psy15216 200 YGPKG---IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMES 276 (2602)
Q Consensus 200 ~Gp~G---~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~ 276 (2602)
++.+| .|+++.+++..+.+.... .....+.+....+.+..+|+- +.-+.++..+++..+.+.|++
T Consensus 209 l~Gh~d~~~G~~~~~~~~~~~l~~~~-------~~~G~~~~p~~a~l~~rgl~T----L~lR~~~~~~na~~la~~L~~- 276 (394)
T PRK09028 209 IVGHSDVMLGTATANEKHWDQLREHS-------YLMGQCTSPDDVYLAMRGLRT----LGVRLAQHEKNALKVANWLAT- 276 (394)
T ss_pred ecCCCCEEEEEEECCHHHHHHHHHHH-------HhcCCCCCHHHHHHHHcccCc----HHHHHHHHHHHHHHHHHHHhc-
Confidence 65444 576665554433333211 111234444444444444443 344555666666677777766
Q ss_pred cCceE-EeCC--CCC-----------CCCceEEEEEccc---ChhHHHHHh--CCeEEcccccCCCC----CCChHHHHH
Q psy15216 277 IEEIY-INGD--MNN-----------RIPHNLNISFNFI---EGESLLMAI--KDIAVSSGSACTSA----SLEPSYVLR 333 (2602)
Q Consensus 277 ~~g~~-l~~~--~~~-----------~~~~~~~~~~~~~---~~~~~~~~L--~gI~v~~g~~~~~~----~~~~~~~~~ 333 (2602)
.|.+. ++-| +++ ....++.|.+... ....+++.| ..+.++-|...+-- .........
T Consensus 277 ~p~v~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~~~~~~~~f~~~l~l~~~~~slG~~~sLv~~p~~~~~~~~~~ 356 (394)
T PRK09028 277 RPEVDHVRHPAFETCPGHEFFKRDFSGSNGLFSFVLKQGDPKAVTALVEGMQHFKMGFSWGGFESLILGVFGINKLRTAT 356 (394)
T ss_pred CCCccEEECCCCCCCccHHHHHHhccCCCceEEEEECCCCHHHHHHHHHhCCcceEecccCCCcceeECCCCcCccCchh
Confidence 45442 2211 111 1122344444311 234666666 34455545332210 000000112
Q ss_pred HcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 334 ALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 334 ~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
..++. ++.||+|+|....++-++.+.++|+.
T Consensus 357 ~~~~~----~~liR~svGlEd~~dLi~Dl~~Al~~ 387 (394)
T PRK09028 357 NWDFS----KPLIRLHIGLEDVDDLIADLEAGFER 387 (394)
T ss_pred hhcCC----CCeEEEEeCcCCHHHHHHHHHHHHHH
Confidence 23333 37899999986655555566566553
|
|
| >PLN03226 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.4e-17 Score=213.47 Aligned_cols=362 Identities=16% Similarity=0.180 Sum_probs=239.0
Q ss_pred CcccHHHHHHHHHhcCCCccccceeeeeceeeeccCCCCCCCHHHHHHHHHHHhhc--cCCCCCccchhHHHHHHHHHHH
Q psy15216 1365 SPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDATTPIDPRVVDKMIPYLRVQ--FGNPASRNHIYGWTAEKAIEKA 1442 (2602)
Q Consensus 1365 ~~~~~~~v~~aL~~~g~~~~~~ei~~iP~~~v~L~~~~~~~~~~v~eal~~~l~~~--~~np~~~~~~~~~~~~~~~~~l 1442 (2602)
||+-+..+.+..+. ....+.++|.. ...++.+++++...+.+. .++|++..+.......++...+
T Consensus 19 d~~~~~~i~~e~~~-----q~~~l~liase--------n~~s~~v~~a~~s~~~~ky~~G~~g~r~~~G~~~~d~lE~~~ 85 (475)
T PLN03226 19 DPEIADIIEKEKRR-----QWKGLELIASE--------NFTSRAVMEALGSCLTNKYSEGLPGARYYGGNEYIDQIETLC 85 (475)
T ss_pred CHHHHHHHHHHHHH-----HHcCeeEecCC--------ccCCHHHHHHHhhHHhccccCCCCCCcCcCCChhHHHHHHHH
Confidence 45555555444432 23345556643 356678999999999554 3567664444444334444456
Q ss_pred HHHHHHHhCCCCCcEEE---eCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHHH-----HhCCcEEEEe--
Q psy15216 1443 RNEVAQLIYADPREIIW---TSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL-----ENDGFRVTYL-- 1512 (2602)
Q Consensus 1443 r~~ia~~~g~~~~~iv~---t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~-----~~~G~~v~~v-- 1512 (2602)
+++.+++|+...+.+.+ ..+++.|+..++.++. +|||+|+..+..+..+....... ...+..+..+
T Consensus 86 ~~~~~~~f~~~~~~~~~nv~~~SG~~AN~av~~aL~----~pgD~Il~~d~~~gGhl~H~~~~~g~~~s~~~~~~~~~~y 161 (475)
T PLN03226 86 QKRALEAFRLDPEKWGVNVQPLSGSPANFAVYTALL----QPHDRIMGLDLPHGGHLSHGYQTDGKKISATSIYFESMPY 161 (475)
T ss_pred HHHHHHHhCCCcceeEEecCcCchHHHHHHHHHHhC----CCCCEEEECCCCcCcchhhhhhhcccccccceEEEEeeee
Confidence 66788889987665544 3788999999999997 89999999664333332221111 1112222222
Q ss_pred ccC-CCCCcChhHHHhhcc-CCceEEEEeccccccccccChHHHHHHhhhcCCEEEEecccccCcccccCCC---CCccE
Q psy15216 1513 KPK-NNGLITLSQLEEKIC-SDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQN---YKVDL 1587 (2602)
Q Consensus 1513 ~~~-~~~~id~d~l~~~i~-~~t~lv~l~~~~n~tG~~~~l~~I~~ia~~~gi~vivD~a~~~g~~~~~l~~---~~~D~ 1587 (2602)
..+ .++.+|+++|++++. .++++|++ +. +.+|...|+++|.++|++||+++++|+||++|.+..+... .++|+
T Consensus 162 ~~~~~~g~iD~d~Le~~l~~~~pklIv~-~~-S~~s~~~D~a~i~~ia~~~ga~LlvD~AH~~Gli~~~~~~~p~~~~Di 239 (475)
T PLN03226 162 RLDESTGLIDYDKLEKKAMLFRPKLIIA-GA-SAYPRDWDYARMRKIADKVGALLMCDMAHISGLVAAQEAASPFEYCDV 239 (475)
T ss_pred eecCCCCCcCHHHHHHHHhhcCCeEEEE-ec-CcCCCccCHHHHHHHHHHcCCEEEEEchhhhCcccCCCCCCCCCCCeE
Confidence 233 467899999999986 46776655 33 3488999999999999999999999999999987665432 25899
Q ss_pred EEEcccc-ccCCCceEEEEEecCCCCccccccccC---------CccccCCCCCcchhHHHHHHHHHHHHH-HHHHHHHH
Q psy15216 1588 MSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGG---------GHEYGLRSGTLATHQIVGMGEAFRLAR-IEMKEELK 1656 (2602)
Q Consensus 1588 ~v~S~~K-~~gp~G~G~l~~~~~~~~~l~~~~~g~---------~~~~~~~~gt~~~~~~~al~~aL~~~~-~~~~~~~~ 1656 (2602)
+++|+|| ++||.| |+++++++..+.+.+...++ .....+ .|+++++.++++.+||++.. .+++.+.+
T Consensus 240 v~~t~hK~L~GP~G-g~I~~~~~~~~~~~~g~~~~~d~~~~i~~a~~~~~-~g~p~~~~iaal~aAl~~i~~~~~~~~~~ 317 (475)
T PLN03226 240 VTTTTHKSLRGPRG-GMIFFRKGPKPPKGQGEGAVYDYEDKINFAVFPGL-QGGPHNHTIAALAVALKQAMTPEFKAYQK 317 (475)
T ss_pred EEecCcccccCCCc-eEEEEchhhcccccCCCccHHHHHHHhccccCCcc-CCCchHHHHHHHHHHHHHHhCcCHHHHHH
Confidence 9999999 559998 88998876543322110000 000112 46788999999999999654 56788899
Q ss_pred HHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEe--cCCcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcC
Q psy15216 1657 RILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN--FIEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALG 1732 (2602)
Q Consensus 1657 ~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~ 1732 (2602)
+..+++++|++.|.+ .|+.+..+... .++..+.+. +.+..++...| .+|.+..+..+...
T Consensus 318 ~~~~na~~L~~~L~~--~G~~l~~~~t~--~hi~lv~~~~~gi~~~~~~~~L~~~~I~~nk~~~p~~~------------ 381 (475)
T PLN03226 318 QVKANAAALANRLMS--KGYKLVTGGTD--NHLVLWDLRPLGLTGSRVEKVLDLAHITLNKNAVPGDS------------ 381 (475)
T ss_pred HHHHHHHHHHHHHHh--CCCEEEcCCCC--CCEEEEEccCCCCCHHHHHHHHHHCCCEECCCCCCCCc------------
Confidence 999999999999987 68888754322 355556653 23555555545 78888766432210
Q ss_pred CCccccCCeEEEe----cCCCCCHHHHHHHHHHHHHh
Q psy15216 1733 CNDELAHSSIRFT----IGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1733 ~~~~~~~~~iRls----~~~~~t~edid~li~~L~~~ 1765 (2602)
.......||++ .....+++|++++.+.|.+.
T Consensus 382 --~~~~~~giRiGt~~lt~~g~~~~d~~~ia~~i~~~ 416 (475)
T PLN03226 382 --SALVPGGVRIGTPAMTSRGLVEKDFEKVAEFLHRA 416 (475)
T ss_pred --ccCCCCCcccCcHHHHHCCCCHHHHHHHHHHHHHH
Confidence 01112568873 33456889999999999873
|
|
| >PRK07811 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=6e-18 Score=217.86 Aligned_cols=306 Identities=14% Similarity=0.090 Sum_probs=199.6
Q ss_pred chhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHHH-HHhCCcE
Q psy15216 34 IYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDGFR 112 (2602)
Q Consensus 34 ~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~-~~~~G~~ 112 (2602)
.+++...+...++++++|+++|.+. . +.++|+++|+.+++.++. ++||+|+++++.|++....+.. +.+.|++
T Consensus 54 ~Y~r~~~p~~~~Le~~lA~~~g~~~-~-i~~~sG~~Ai~~~l~all----~~Gd~Vl~~~~~y~~t~~~~~~~~~~~gi~ 127 (388)
T PRK07811 54 EYARTGNPTRTALEEQLAALEGGAY-G-RAFSSGMAATDCLLRAVL----RPGDHIVIPNDAYGGTFRLIDKVFTRWGVE 127 (388)
T ss_pred cccCCCCccHHHHHHHHHHHhCCCc-e-EEeCCHHHHHHHHHHHHh----CCCCEEEEcCCCchHHHHHHHHhCcCCCeE
Confidence 3444444668899999999999863 3 445677899999999987 8999999999999976655544 3456888
Q ss_pred EEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHhcCCEEEEecccccccccccCCCCCccEE
Q psy15216 113 VTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLM 192 (2602)
Q Consensus 113 v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~~g~~livD~a~a~g~~~~dl~~~~~D~~ 192 (2602)
+++++. .|+++++++++++|++|++++|+||||.+.|+++|.++|+++|+++|+|++++.+.....+ ..++|++
T Consensus 128 ~~~~d~-----~d~e~l~~~i~~~tklV~ie~p~NPtg~~~dl~~I~~la~~~gi~lIvD~a~a~~~~~~p~-~~gaDiv 201 (388)
T PRK07811 128 YTPVDL-----SDLDAVRAAITPRTKLIWVETPTNPLLSITDIAALAELAHDAGAKVVVDNTFASPYLQQPL-ALGADVV 201 (388)
T ss_pred EEEeCC-----CCHHHHHHhcCcCCeEEEEECCCCCcceecCHHHHHHHHHHcCCEEEEECCCCccccCCch-hhCCcEE
Confidence 888874 4899999999999999999999999999999999999999999999999999887643333 3578999
Q ss_pred EeccccccCCCC---cEEEEEecC-CCCcccceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy15216 193 SFSAHKIYGPKG---IGALYIRRN-PRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKR 268 (2602)
Q Consensus 193 ~~S~~K~~Gp~G---~G~l~~~~~-~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~ 268 (2602)
++|++|+++++| .|+++++++ +.+.++..... .....+....+.+...|+ .+..+.++..+++..
T Consensus 202 v~S~sK~l~g~~~~~gG~vv~~~~~l~~~~~~~~~~-------~g~~~s~~~a~l~~~~L~----tl~~R~~~~~~na~~ 270 (388)
T PRK07811 202 VHSTTKYIGGHSDVVGGALVTNDEELDEAFAFLQNG-------AGAVPGPFDAYLTLRGLK----TLAVRMDRHSENAEA 270 (388)
T ss_pred EecCceeecCCCCcEEEEEEECCHHHHHHHHHHHHh-------cCCCCCHHHHHHHHhccC----cHHHHHHHHHHHHHH
Confidence 999999776543 588887643 33333322111 011222222111112222 245666667778888
Q ss_pred HHHHHhhccCceEEe-CCC--CC-----------CCCceEEEEEcc--cChhHHHHHh--CCeEEcccccCCC---C-CC
Q psy15216 269 LYNGLMESIEEIYIN-GDM--NN-----------RIPHNLNISFNF--IEGESLLMAI--KDIAVSSGSACTS---A-SL 326 (2602)
Q Consensus 269 l~~~L~~~~~g~~l~-~~~--~~-----------~~~~~~~~~~~~--~~~~~~~~~L--~gI~v~~g~~~~~---~-~~ 326 (2602)
+.+.|++ .|++.-+ -|. ++ ....++.|.+.+ .....+++.| ..+..+-|...+- + ..
T Consensus 271 la~~L~~-~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~~f~~~l~~~~~~~s~G~~~sl~~~~~~~ 349 (388)
T PRK07811 271 VAEFLAG-HPEVSTVLYPGLPSHPGHEVAARQMRGFGGMVSVRLAGGEEAARDFCARTKVFTLAESLGGVESLIEHPSAM 349 (388)
T ss_pred HHHHHHh-CCCeeEEECCCCCCCchHHHHHHhcCCCCceEEEEeCCCHHHHHHHHHhCCcceeeccCCCCcceEeCCccc
Confidence 8888877 6766422 111 11 112234444432 1234566666 3445554532221 0 00
Q ss_pred Ch-HHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHH
Q psy15216 327 EP-SYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK 367 (2602)
Q Consensus 327 ~~-~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~ 367 (2602)
.+ ....+..|+. ++.||+|+|..+.++=++.+.++|.
T Consensus 350 ~~~~~~~~~~gi~----~~liR~svGlE~~~dl~~dl~~al~ 387 (388)
T PRK07811 350 THASTAGSQLEVP----DDLVRLSVGIEDVADLLADLEQALG 387 (388)
T ss_pred CcccCCHhhcCCC----CCEEEEEeCCCCHHHHHHHHHHHhh
Confidence 00 0001234554 4789999998655555555555543
|
|
| >cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.3e-18 Score=216.35 Aligned_cols=304 Identities=17% Similarity=0.164 Sum_probs=208.1
Q ss_pred cchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHHH-HHhCCc
Q psy15216 33 HIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDGF 111 (2602)
Q Consensus 33 ~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~-~~~~G~ 111 (2602)
+.+++...+..+++++++++++|.+ ..++++|+++|+..++.++. ++||+|+++.+.|++....+.. +...|+
T Consensus 32 ~~y~r~~~p~~~~le~~la~l~g~~--~a~~~~sG~~Ai~~~l~~l~----~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~ 105 (369)
T cd00614 32 YIYSRIGNPTVDALEKKLAALEGGE--AALAFSSGMAAISTVLLALL----KAGDHVVASDDLYGGTYRLFERLLPKLGI 105 (369)
T ss_pred ceeECCCChhHHHHHHHHHHHHCCC--CEEEEcCHHHHHHHHHHHHc----CCCCEEEECCCCcchHHHHHHHHHhhcCe
Confidence 4455555677899999999999964 56778888999999999987 7999999999999998766653 356799
Q ss_pred EEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHhcCCEEEEecccccccccccCCCCCccE
Q psy15216 112 RVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDL 191 (2602)
Q Consensus 112 ~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~~g~~livD~a~a~g~~~~dl~~~~~D~ 191 (2602)
++++++.+ |++++++++++++++|++++++||+|.+.|+++|+++||+||+++++|++++.+... ....+++|+
T Consensus 106 ~~~~v~~~-----d~~~l~~~i~~~~~~v~~e~~~np~g~~~dl~~i~~la~~~g~~livD~t~~~~~~~-~~~~~g~Di 179 (369)
T cd00614 106 EVTFVDPD-----DPEALEAAIKPETKLVYVESPTNPTLKVVDIEAIAELAHEHGALLVVDNTFATPYLQ-RPLELGADI 179 (369)
T ss_pred EEEEeCCC-----CHHHHHHhcCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcchhcC-ChhhhCCcE
Confidence 99998754 589999999999999999999999999999999999999999999999999887642 223467899
Q ss_pred EEeccccccCCCC---cEEEEEec-CCCCcccceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy15216 192 MSFSAHKIYGPKG---IGALYIRR-NPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQK 267 (2602)
Q Consensus 192 ~~~S~~K~~Gp~G---~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~ 267 (2602)
++.|++|.+|++| .|+++.++ ++++.++.... ...++.+....+.+..+++ .+....++..+++.
T Consensus 180 vv~S~tK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~-------~~g~~~~p~~a~~~l~~l~----tl~~r~~~~~~na~ 248 (369)
T cd00614 180 VVHSATKYIGGHSDVIAGVVVGSGEALIQRLRFLRL-------ALGTILSPFDAWLLLRGLK----TLPLRMERHSENAL 248 (369)
T ss_pred EEeccceeccCCCCceEEEEEeCcHHHHHHHHHHHH-------hhCCCCCHHHHHHHHcCCC----CHHHHHHHHHHHHH
Confidence 9999999776554 68899877 66666653321 1122333333333323332 24456677788888
Q ss_pred HHHHHHhhccCceEEe-CCC--C-----------CCCCceEEEEEcc--cChhHHHHHhC--CeEEcccccCC----CC-
Q psy15216 268 RLYNGLMESIEEIYIN-GDM--N-----------NRIPHNLNISFNF--IEGESLLMAIK--DIAVSSGSACT----SA- 324 (2602)
Q Consensus 268 ~l~~~L~~~~~g~~l~-~~~--~-----------~~~~~~~~~~~~~--~~~~~~~~~L~--gI~v~~g~~~~----~~- 324 (2602)
++.+.|.+ .|++.-+ -|. . .....++.|.+.+ .....+++.|+ ++..+-|...+ +.
T Consensus 249 ~la~~L~~-~~~v~~V~~p~l~~~~~~~~~~~~~~g~g~i~s~~l~~~~~~~~~f~~~l~~~~~~~s~G~~~sl~~~~~~ 327 (369)
T cd00614 249 KVAEFLEK-HPKVERVYYPGLPSHPQHELAKKQMSGYGGVFSFELKGGLEAAKKFLNALKLFSLAVSLGGVESLVEHPAS 327 (369)
T ss_pred HHHHHHHc-CCCccEEECCCCCCCchHHHHHHhcCCCceEEEEEeCCCHHHHHHHHHcCCcceEcccCCCCceeeeCCcc
Confidence 88888877 5654322 110 0 0123344444542 12345666663 33444443222 10
Q ss_pred --C-CChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 325 --S-LEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 325 --~-~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
| ..+.-.....|++ ++.||+|+|. ||.+.+++-|++
T Consensus 328 ~~~~~~~~~~~~~~g~~----~~liR~svGl----E~~~dl~~dl~~ 366 (369)
T cd00614 328 MTHSQLPPEERAAAGIT----PGLVRLSVGI----EDVEDLIADLEQ 366 (369)
T ss_pred cccccCCHHHHHhcCCC----CCeEEEEeCc----CCHHHHHHHHHH
Confidence 0 0111123345665 3789999997 556666666654
|
This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. |
| >PLN02368 alanine transaminase | Back alignment and domain information |
|---|
Probab=99.79 E-value=1e-17 Score=215.87 Aligned_cols=237 Identities=16% Similarity=0.138 Sum_probs=176.1
Q ss_pred HHHHHHHHHHHh----C--CCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEe
Q psy15216 1439 IEKARNEVAQLI----Y--ADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYL 1512 (2602)
Q Consensus 1439 ~~~lr~~ia~~~----g--~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v 1512 (2602)
..++|+++++++ | +++++|++|+|+++++..++.++. .++||+|++++|.|+.+...+..+ |++++.+
T Consensus 109 ~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~---~~pGd~Vli~~P~Y~~y~~~~~~~---g~~~v~v 182 (407)
T PLN02368 109 LPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQILNAVI---RGEKDGVLVPVPQYPLYSATISLL---GGTLVPY 182 (407)
T ss_pred CHHHHHHHHHHHHHhcCCCCChhhEEEcccHHHHHHHHHHHHc---CCCCCEEEEeCCCCccHHHHHHHc---CCEEEEE
Confidence 456777777776 5 478899999999999999998875 258999999999999998877666 8999999
Q ss_pred ccCC--CCCcChhHHHhhccC------CceEEEEeccccccccccC---hHHHHHHhhhcCCEEEEecccccCc-----c
Q psy15216 1513 KPKN--NGLITLSQLEEKICS------DTILVSVMLVNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQAVGK-----I 1576 (2602)
Q Consensus 1513 ~~~~--~~~id~d~l~~~i~~------~t~lv~l~~~~n~tG~~~~---l~~I~~ia~~~gi~vivD~a~~~g~-----~ 1576 (2602)
+++. ++.+|++++++++++ +|+++++++|+||||.+++ +++|+++|++||+++|+|++|..-. .
T Consensus 183 ~~~~~~~~~~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v~s~e~l~~l~~~a~~~~~~II~DE~Y~~l~y~~~~~ 262 (407)
T PLN02368 183 YLEESENWGLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILKFCYQERLVLLGDEVYQQNIYQDERP 262 (407)
T ss_pred ecccccCCCCCHHHHHHHHHHHhhcCCCeEEEEEECCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCC
Confidence 8864 367999999999974 7899999999999999999 6678888999999999999975321 1
Q ss_pred ccc-------CC----CCCccEEEEcccccc-CCCc--eEEEEE---ecCCCCccccccccCCccccCCCCCcchhHHHH
Q psy15216 1577 DIN-------IQ----NYKVDLMSFSAHKIY-GPKG--IGALYI---RRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVG 1639 (2602)
Q Consensus 1577 ~~~-------l~----~~~~D~~v~S~~K~~-gp~G--~G~l~~---~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~a 1639 (2602)
..+ +. ..+.-+++.||+|.+ |++| +||+++ ++++++.+.... .. ..+++...+.+
T Consensus 263 ~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~GlRiGy~i~~~~~~~li~~~~~~~-------~~-~~~~~~~~Q~a 334 (407)
T PLN02368 263 FISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVEEIYKVA-------SI-ALSPNVSGQIF 334 (407)
T ss_pred cccHHHHHhhhcccccccceEEEEecCCcccccCCccceEEEEEeCCCHHHHHHHHHHh-------cc-cCCCCcHHHHH
Confidence 111 11 111346777999976 7888 899995 555555554321 01 23455566666
Q ss_pred HHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEec
Q psy15216 1640 MGEAFRLA----------RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF 1696 (2602)
Q Consensus 1640 l~~aL~~~----------~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~ 1696 (2602)
+.++|+.. .....+....++++++++.+.|++ ++|+.+.. |.+.++.|+.
T Consensus 335 a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~L~~-~~g~~~~~------P~Gafy~~~~ 394 (407)
T PLN02368 335 MGLMVNPPKPGDISYDQFVRESKGILESLRRRARMMTDGFNS-CKNVVCNF------TEGAMYSFPQ 394 (407)
T ss_pred HHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCeEeCC------CCeeeEeccC
Confidence 66777521 122345678889999999999988 78887753 3455666653
|
|
| >PLN02242 methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.79 E-value=8e-18 Score=217.29 Aligned_cols=310 Identities=15% Similarity=0.117 Sum_probs=209.8
Q ss_pred cchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHHHH--HhCC
Q psy15216 33 HIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL--ENDG 110 (2602)
Q Consensus 33 ~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~--~~~G 110 (2602)
+.+++...+..+++++.+|+++|.+ .+++++|+++|+.+++.++. ++||+|+++.+.|+++...+... +..|
T Consensus 68 ~~Y~r~~~Pt~~~LE~~lA~l~g~~--~~l~~~sG~~Ai~~al~al~----~~GD~Vl~~~~~Y~~~~~~~~~~~~~~~G 141 (418)
T PLN02242 68 YIYSRHFNPTVLNLGRQMAALEGTE--AAYCTASGMSAISSVLLQLC----SSGGHVVASNTLYGGTHALLAHFLPRKCN 141 (418)
T ss_pred ccccCCCChhHHHHHHHHHHHhCCC--eEEEEccHHHHHHHHHHHHh----CCCCEEEEcCCcHHHHHHHHHHhhhhccC
Confidence 4556555678899999999999975 56789999999999999987 89999999999998876655322 2358
Q ss_pred cEEEEeccCCCCccChHHHHhhccC-CceEEEEecccCcccccccHHHHHHHHHhcCCEEEEecccccccccccCCCCCc
Q psy15216 111 FRVTYLKPKNNGLITLSQLEEKICS-DTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKV 189 (2602)
Q Consensus 111 ~~v~~v~~~~~~~ld~e~l~~~i~~-~tklv~i~~~~npTG~~~~l~~I~~la~~~g~~livD~a~a~g~~~~dl~~~~~ 189 (2602)
+++++++.. |++++++++++ +|++|++++|+||||.+.|+++|+++||+||+++|+|++|+... ++...++.
T Consensus 142 ~~~~~~d~~-----d~e~l~~~i~~~~tklV~lesp~NPtG~v~dl~~I~~la~~~gi~livDea~~~~~--~~~~~~g~ 214 (418)
T PLN02242 142 ITTTFVDIT-----DLEAVKKAVVPGKTKVLYFESISNPTLTVADIPELARIAHEKGVTVVVDNTFAPMV--LSPARLGA 214 (418)
T ss_pred ceEEEcCCC-----CHHHHHHhcCcCCCEEEEEecCCCCCCcccCHHHHHHHHHHhCCEEEEECCCCccC--CCHHHcCC
Confidence 888887643 89999999998 59999999999999999999999999999999999999996433 33345578
Q ss_pred cEEEeccccccCCCC---cEEEEEecCCCCcccceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy15216 190 DLMSFSAHKIYGPKG---IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQ 266 (2602)
Q Consensus 190 D~~~~S~~K~~Gp~G---~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~ 266 (2602)
|++++|++|.++++| .|+++.++++++.+.....+. ....|. ......+...++.. ..+....+++.+++
T Consensus 215 divv~S~SK~l~g~g~~~gG~iv~~~~li~~l~~~~~~~----~~~~g~-~~~~~~A~l~~~~l--~tl~~r~~~~~~~a 287 (418)
T PLN02242 215 DVVVHSISKFISGGADIIAGAVCGPAELVNSMMDLHHGA----LMLLGP-TMNPKVAFELSERL--PHLSLRMKEHCRRA 287 (418)
T ss_pred cEEEEeCccccCCCCCceEEEEEcCHHHHHHHHHHhhhh----hhccCC-CCCHHHHHHHHcCC--CcHHHHHHHHHHHH
Confidence 999999999887666 589998887776665432110 011232 22222222222221 23455667888899
Q ss_pred HHHHHHHhhccCceEEeCCC--CC---------C---CCceEEEEEcccC---hhHHHHHhC------CeEEcccccCCC
Q psy15216 267 KRLYNGLMESIEEIYINGDM--NN---------R---IPHNLNISFNFIE---GESLLMAIK------DIAVSSGSACTS 323 (2602)
Q Consensus 267 ~~l~~~L~~~~~g~~l~~~~--~~---------~---~~~~~~~~~~~~~---~~~~~~~L~------gI~v~~g~~~~~ 323 (2602)
..+.+.|.+ . +++++-|. ++ . ...+..++|...+ ...+++.++ .+.++.|...+-
T Consensus 288 ~~la~~L~~-~-~~~V~yP~l~~~p~~~~~~~~~~~~~g~g~~~sf~l~~~~~~~~f~~~l~~~~~~~~~~~slG~~~sl 365 (418)
T PLN02242 288 MEYAKRMKE-L-GLKVIYPGLEDHPQHALLKSMANKGYGFGGLLCLDMDTEERANRLMRYLQNSTQFGFMAVSLGYYETL 365 (418)
T ss_pred HHHHHHHHh-C-CCEEECCCCCCCccHHHHHHhcccCCCceeEEEEEECCHHHHHHHHHHhhcccccceeeecCCCCCce
Confidence 999999987 3 45655332 11 0 0123334443222 345666664 455665543331
Q ss_pred C-------C-CChHHHHHHcCCCccCCCCeEEEecCCCC-CHHHHHHHHHHHHh
Q psy15216 324 A-------S-LEPSYVLRALGCNDELAHSSIRFTIGRFT-TEKEIDFTIKLLKM 368 (2602)
Q Consensus 324 ~-------~-~~~~~~~~~~g~~~~~~~~~iRis~~~~~-t~edid~li~~L~~ 368 (2602)
- | ..+.-.....|++ ++.||+|+|... .++=++.+-++|+.
T Consensus 366 ~~~p~~~~~~~~~~~~~~~~gi~----~~liRlsvGlE~~~~dli~dl~~al~~ 415 (418)
T PLN02242 366 MSCSGSSTSSELDPEEKAAAGIS----PGLVRMSVGYTGTLEQRWSQFEKALSA 415 (418)
T ss_pred eeCCCccccccCCHHHHHhcCCC----CCeEEEEecCCCCHHHHHHHHHHHHHH
Confidence 1 0 0111222345665 378999999863 45555555555553
|
|
| >PRK13580 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.7e-18 Score=212.64 Aligned_cols=334 Identities=16% Similarity=0.168 Sum_probs=229.9
Q ss_pred CCCCCCCHHHHHHHHHHHhhhc--CCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccc
Q psy15216 4 SATTPIDPRVVDKMIPYLRVQF--GNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHF 81 (2602)
Q Consensus 4 a~~~~~p~~v~~a~~~~l~~~~--~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~ 81 (2602)
++-..+++.+++++...+.+.| ++|+...|............+.++..++||++..+|-..+| +.|+..++.++.
T Consensus 56 asEN~~s~~v~~a~~s~l~nkyaeg~pg~ryy~g~~~~d~ie~l~~~ra~~lf~a~~anvqp~Sg-~~An~~v~~all-- 132 (493)
T PRK13580 56 ASENYSSLAVQLAMGNLLTDKYAEGTPGHRFYAGCQNVDTVEWEAAEHAKELFGAEHAYVQPHSG-ADANLVAFWAIL-- 132 (493)
T ss_pred cccccCCHHHHHHhcccccccCcCCCCCccccCCCchHHHHHHHHHHHHHHHhCCCcccccCCCc-HHHHHHHHHHHh--
Confidence 3445788999999988877654 46655333333333445555778888999998777776666 568888888887
Q ss_pred cccC-------------------------------CCEEEEcCCCCcccHHH---HHHHHhCCcEEEEeccCC-CCccCh
Q psy15216 82 YKKR-------------------------------GKHIITVQTEHKSVLDS---IRKLENDGFRVTYLKPKN-NGLITL 126 (2602)
Q Consensus 82 ~~~~-------------------------------gd~Vlv~~~~~~s~~~~---~~~~~~~G~~v~~v~~~~-~~~ld~ 126 (2602)
+| ||.|+..+..++..... .... .....++..++++ ++.+|+
T Consensus 133 --~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~gd~i~~l~l~~GGHlthg~~~n~~-~~~~~~~~y~vd~~~g~iD~ 209 (493)
T PRK13580 133 --AHKVESPALEKLGAKTVNDLTEEDWEALRAELGNQRLLGMSLDSGGHLTHGFRPNIS-GKMFHQRSYGVDPDTGLLDY 209 (493)
T ss_pred --cccccCcchhccccccccccchhhhhhhhccCCCCEEEeecCCCCCeeecCcccchh-hheeeeEecccCcccCccCH
Confidence 43 79999887766543211 1111 1124556666664 688999
Q ss_pred HHHHhhccCCceEEEEecccCcccccccHHHHHHHHHhcCCEEEEecccccccccccCC------CCCccEEEecccc-c
Q psy15216 127 SQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQ------NYKVDLMSFSAHK-I 199 (2602)
Q Consensus 127 e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~~g~~livD~a~a~g~~~~dl~------~~~~D~~~~S~~K-~ 199 (2602)
+++++.++++++.+++++.+|. |...|+++|.++|++||+++++|++|++|..+.+.. ..++|++++|+|| +
T Consensus 210 d~l~~~~~~~~plvii~g~S~~-~~~~dl~~i~eia~~~gA~L~VD~AH~~Gligg~~~~~~~~~~~~~D~vtgT~hKaL 288 (493)
T PRK13580 210 DEIAALAREFKPLILVAGYSAY-PRRVNFAKLREIADEVGAVLMVDMAHFAGLVAGKVFTGDEDPVPHADIVTTTTHKTL 288 (493)
T ss_pred HHHHHHHhhcCCEEEEeCcccc-CCCcCHHHHHHHHHHcCCEEEEECchhhceeccccchhhcCCCCCCcEEEeCChhhc
Confidence 9999999999999999999998 557899999999999999999999999998764441 1268999999999 5
Q ss_pred cCCCCcEEEEEecCCCCcccceecCCCccccccccCcchhHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHhhccC
Q psy15216 200 YGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLAR-IEMKEELKRILFLQKRLYNGLMESIE 278 (2602)
Q Consensus 200 ~Gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~-~~~~~~~~~~~~l~~~l~~~L~~~~~ 278 (2602)
+||.| |++++++++.+.+.... .+..|++..+.+++...++.... ....+.+++..+++++|.+.|.+ .
T Consensus 289 ~GP~G-G~I~~~~~l~~~L~~a~-------P~i~gg~l~p~iAA~avAl~e~~~~ef~~y~~~l~~Na~~La~~L~~--~ 358 (493)
T PRK13580 289 RGPRG-GLVLAKKEYADAVDKGC-------PLVLGGPLPHVMAAKAVALAEARTPEFQKYAQQVVDNARALAEGFLK--R 358 (493)
T ss_pred cCCCe-EEEEecHHHHHHHhhCC-------CcccCCCccHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh--c
Confidence 58997 99999987666552111 12345566667776666766433 23466888999999999999987 5
Q ss_pred ceEEeCCCCCCCCceEEEEEcccC--hhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCC
Q psy15216 279 EIYINGDMNNRIPHNLNISFNFIE--GESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFT 354 (2602)
Q Consensus 279 g~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~ 354 (2602)
|+.+...... .+++.+.+...+ ...+.+.| .||.+..-.....+ .+ ......|||++...+
T Consensus 359 G~~vv~ggTd--shIV~V~lg~~~~~g~~a~~~L~e~GI~vn~i~~Ptvp----------~g---~~~~srLRIg~~A~t 423 (493)
T PRK13580 359 GARLVTGGTD--NHLVLIDVTSFGLTGRQAESALLDAGIVTNRNSIPSDP----------NG---AWYTSGIRLGTPALT 423 (493)
T ss_pred CCCccCCCCC--CCEEEEEeCCHHHHHHHHHHHHHHCCeEEccccCCCCC----------CC---CCCCceEEeccchhh
Confidence 7776532221 244445543322 22344455 78888644322211 00 011367999988744
Q ss_pred ----CHHHHHHHHHHHHhh
Q psy15216 355 ----TEKEIDFTIKLLKMK 369 (2602)
Q Consensus 355 ----t~edid~li~~L~~~ 369 (2602)
+++||+++++.|.+.
T Consensus 424 trg~teedi~~iad~l~~~ 442 (493)
T PRK13580 424 TLGMGSDEMDEVAELIVKV 442 (493)
T ss_pred hcCCCHHHHHHHHHHHHHH
Confidence 599999999999863
|
|
| >PRK08574 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1e-17 Score=214.93 Aligned_cols=306 Identities=13% Similarity=0.078 Sum_probs=201.3
Q ss_pred cchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHHHHHhCCcE
Q psy15216 33 HIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFR 112 (2602)
Q Consensus 33 ~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~ 112 (2602)
+.+++...+..+++++.+|+++|.+ ++++++|++.|+.+++.++. ++||+|+++.+.|+++...++.+...|++
T Consensus 45 ~~y~r~~np~~~~lE~~lA~l~g~~--~~l~~~sG~~Ai~~~l~~ll----~~GD~Vlv~~~~y~~~~~~~~~~~~~g~~ 118 (385)
T PRK08574 45 LKYSREENPTLRPLEEALAKLEGGV--DALAFNSGMAAISTLFFSLL----KAGDRVVLPMEAYGTTLRLLKSLEKFGVK 118 (385)
T ss_pred ceEECCCCccHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHHh----CCCCEEEEcCCCchhHHHHHHHhhccCcE
Confidence 4455555567889999999999964 66778899999999998887 89999999999999998888766667888
Q ss_pred EEEeccCCCCccChHHHHhhccC-CceEEEEecccCcccccccHHHHHHHHHhcCCEEEEecccccccccccCCCCCccE
Q psy15216 113 VTYLKPKNNGLITLSQLEEKICS-DTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDL 191 (2602)
Q Consensus 113 v~~v~~~~~~~ld~e~l~~~i~~-~tklv~i~~~~npTG~~~~l~~I~~la~~~g~~livD~a~a~g~~~~dl~~~~~D~ 191 (2602)
++++. +|++++++++++ +|++|++++|+||||.+.|+++|+++||++|+++++|++|+.|...-.+ ..++|+
T Consensus 119 v~~~~------~d~~~l~~~i~~~~tklV~ie~p~NPtG~v~dl~~I~~la~~~gi~livD~t~a~~~~~~~l-~~GaDi 191 (385)
T PRK08574 119 VVLAY------PSTEDIIEAIKEGRTKLVFIETMTNPTLKVIDVPEVAKAAKELGAILVVDNTFATPLLYRPL-RHGADF 191 (385)
T ss_pred EEEEC------CCHHHHHHhcCccCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCccccCChh-hhCCcE
Confidence 88764 368999999998 9999999999999999999999999999999999999999877543222 467899
Q ss_pred EEeccccccCCCC---cEEEEE-ecCCCCcccceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy15216 192 MSFSAHKIYGPKG---IGALYI-RRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQK 267 (2602)
Q Consensus 192 ~~~S~~K~~Gp~G---~G~l~~-~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~ 267 (2602)
+++|+||+++.+| .|++++ ++++.++++.... ......+....+.+..+++ .+..+.++..+++.
T Consensus 192 vv~S~sK~l~g~~d~~gG~vi~~~~~~~~~~~~~~~-------~~g~~~~p~~a~l~l~~l~----tL~~R~~~~~~na~ 260 (385)
T PRK08574 192 VVHSLTKYIAGHNDVVGGVAVAWSGEFLEELWEWRR-------RLGTIMQPFEAYLVLRGLK----TLEVRFERQCRNAM 260 (385)
T ss_pred EEeeCceeecCCCCceeEEEEECcHHHHHHHHHHHH-------hcCCCCCHHHHHHHHcccC----cHHHHHHHHHHHHH
Confidence 9999999665443 365555 4444444432221 1112233222222223333 24456666677777
Q ss_pred HHHHHHhhccCceE-Ee--CCCCC-------------CCCceEEEEEcc--cChhHHHHHh--CCeEEcccccCCC----
Q psy15216 268 RLYNGLMESIEEIY-IN--GDMNN-------------RIPHNLNISFNF--IEGESLLMAI--KDIAVSSGSACTS---- 323 (2602)
Q Consensus 268 ~l~~~L~~~~~g~~-l~--~~~~~-------------~~~~~~~~~~~~--~~~~~~~~~L--~gI~v~~g~~~~~---- 323 (2602)
.+.+.|++ .|.+. +. +-+++ .....+.|.+.+ .....+++.| ..+.++-|...+-
T Consensus 261 ~la~~L~~-~p~v~~V~yP~l~~~~~~~~~~~~~~~~g~g~~~s~~l~~~~~~~~~~~~~l~l~~~~~s~G~~~sl~~~~ 339 (385)
T PRK08574 261 AIAEFLSE-HPKVAEVYYPGLPSDPYHGVAKRLFGKDLYGGVVSFRVKGGRDAVLKFLRSLKLIKPSPSLGGVESLATYP 339 (385)
T ss_pred HHHHHHHc-CCCcCEEECCCCCCCchHHHHHHhCCCCCcceEEEEEeCCCHHHHHHHHHcCCcceEccCCCCCcceeeCC
Confidence 88787766 56543 22 11111 012233344432 1134566666 3444554433221
Q ss_pred C---C-CChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHH
Q psy15216 324 A---S-LEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK 367 (2602)
Q Consensus 324 ~---~-~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~ 367 (2602)
. | ..+.-.....|+.+ +.||+|+|..+.++=++.+-++|+
T Consensus 340 ~~~~~~~~~~~~~~~~gi~~----~liR~svGlE~~~dli~dl~~al~ 383 (385)
T PRK08574 340 VKSAASPIPEEDRKALGITE----DLVRLSVGLEDVEDLIEDLDQALG 383 (385)
T ss_pred CcCCcccCCHHHHHhcCCCC----CeEEEEeccCCHHHHHHHHHHHHh
Confidence 0 0 01112234566653 789999997554444444444443
|
|
| >PRK08249 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.3e-17 Score=214.46 Aligned_cols=308 Identities=16% Similarity=0.098 Sum_probs=203.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHH-HHhCCc
Q psy15216 1429 HIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDGF 1507 (2602)
Q Consensus 1429 ~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~-~~~~G~ 1507 (2602)
|.+++.......++++.+++++|.+ ..++++|+++|+..++.++. ++||+|+++.+.|+++...+.. +...|+
T Consensus 56 ~~y~r~~~p~~~~le~~lA~l~g~~--~~i~~ssG~~Ai~~~l~all----~~GD~Vi~~~~~y~~~~~~~~~~~~~~Gi 129 (398)
T PRK08249 56 HIYSRNTNPTVQAFEEKVRILEGAE--AATAFSTGMAAISNTLYTFL----KPGDRVVSIKDTYGGTNKIFTEFLPRMGV 129 (398)
T ss_pred ccccCCCChHHHHHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHhc----CCCCEEEEcCCchHHHHHHHHHHHhhCCe
Confidence 3344445567889999999999964 56777888999999998886 8999999999999987766643 455699
Q ss_pred EEEEeccCCCCCcChhHHHhhccCCceEEEEeccccccccccChHHHHHHhhhcCCEEEEecccccCcccccCCCCCccE
Q psy15216 1508 RVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDL 1587 (2602)
Q Consensus 1508 ~v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~ 1587 (2602)
++++++. .|+++++++|+++|++|++++|+||||.+.|+++|.++|++||+++++|++++.+.....+ .+++|+
T Consensus 130 ~v~~vd~-----~d~e~l~~~i~~~tklV~ie~p~NPtg~v~dl~~I~~la~~~gi~livD~t~a~~~~~~~l-~~~~Di 203 (398)
T PRK08249 130 DVTLCET-----GDHEQIEAEIAKGCDLLYLETPTNPTLKIVDIERLAAAAKKVGALVVVDNTFATPINQNPL-ALGADL 203 (398)
T ss_pred EEEEcCC-----CCHHHHHHhcCCCCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCcCccccCCch-hhCCCE
Confidence 9888763 5899999999999999999999999999999999999999999999999999866533222 467999
Q ss_pred EEEccccccCCCc---eEEEEEecCCCCccccccccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15216 1588 MSFSAHKIYGPKG---IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKR 1664 (2602)
Q Consensus 1588 ~v~S~~K~~gp~G---~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~ 1664 (2602)
++.|++|++|+.| .|+++.++++++.+..... ....+.+....+.+...++. +...+++..+++.+
T Consensus 204 vv~S~sK~l~g~~~~~gG~vv~~~~l~~~l~~~~~-------~~g~~~s~~~a~l~l~~l~t----L~~R~~~~~~na~~ 272 (398)
T PRK08249 204 VIHSATKFLSGHADALGGVVCGSKELMEQVYHYRE-------INGATMDPMSAYLILRGMKT----LKLRVRQQQESAMA 272 (398)
T ss_pred EeccCceecCCCCCceEEEEECCHHHHHHHHHHHH-------hcCCCCCHHHHHHHHhCcch----HHHHHHHHHHHHHH
Confidence 9999999776544 4777766665555543221 11123333333322233332 34555666778888
Q ss_pred HHHHHhhcCCcEE-EeCC--CCC-----------CCCceEEEEEecC--CcHHHHHhcC--CEEEccccccCC---C---
Q psy15216 1665 LYNGLMESIEEIY-INGD--MNN-----------RIPHNLNISFNFI--EGESLLMAIK--DIAVSSGSACTS---A--- 1720 (2602)
Q Consensus 1665 l~~~L~~~~~gl~-i~~~--~~~-----------~~~~~~~~~~~~~--~~~~~~~~L~--gI~v~~g~~~~~---~--- 1720 (2602)
+.+.|.+ .|.+. +.-| +++ ....+..|.+.+. ....++..|+ .+.++-|...+- +
T Consensus 273 la~~L~~-~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~sf~~~~~~~~~~~f~~~l~l~~~~~s~G~~~sl~~~~~~~ 351 (398)
T PRK08249 273 LAKYLQT-HPKVEAVYYPGLETHPNHEIAKAQMRGFGGILSFVLKGGMDTVKRLLPKLRYAHRAANLGAVETIYGPARTT 351 (398)
T ss_pred HHHHHHc-CCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEEcCCHHHHHHHHHhCCcceEccCCCCCCceeeCCccc
Confidence 8888876 56554 2211 111 1222334444321 1234555552 333333322210 0
Q ss_pred --CCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1721 --SLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1721 --~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
...+.-.....|+.+ +.||||+|..+.++-++.+-++|+.
T Consensus 352 ~~~~~~~~~~~~~gi~~----~liR~svGlE~~~dl~~dl~~al~~ 393 (398)
T PRK08249 352 SHVENTLEERAALGIPE----GLVRISVGIEDTEDLIADLEQAFAH 393 (398)
T ss_pred ccccCCHHHHHhcCCCC----CeEEEEeccCCHHHHHHHHHHHHHH
Confidence 011112233456653 7899999987655555555555553
|
|
| >PRK05968 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.8e-18 Score=216.85 Aligned_cols=301 Identities=15% Similarity=0.118 Sum_probs=209.0
Q ss_pred HHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHH-HHHhCCcEEEEecc
Q psy15216 1436 EKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIR-KLENDGFRVTYLKP 1514 (2602)
Q Consensus 1436 ~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~-~~~~~G~~v~~v~~ 1514 (2602)
.....++++.+++++|.+ ..+++++++.|+..++.++. ++||+|+++.+.|++....+. .+...|+++++++.
T Consensus 62 ~p~~~~le~~lA~l~g~~--~av~~~sG~~Ai~~al~al~----~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~ 135 (389)
T PRK05968 62 NPTVRAFEEMLAKLEGAE--DARGFASGMAAISSTVLSFV----EPGDRIVAVRHVYPDAFRLFETILKRMGVEVDYVDG 135 (389)
T ss_pred ChhHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHHh----CCCCEEEEeCCCchHHHHHHHHHHHHcCceEEEeCC
Confidence 345789999999999975 34556777889999988876 899999999999998765554 44566999999874
Q ss_pred CCCCCcChhHHHhhccCCceEEEEeccccccccccChHHHHHHhhhcCCEEEEecccccCcccccCCCCCccEEEEcccc
Q psy15216 1515 KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK 1594 (2602)
Q Consensus 1515 ~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K 1594 (2602)
+ |++++++++ ++|++|++.+|+|+++.+.|+++|.++|++||+++++|++++.+....++ .+++|++++|++|
T Consensus 136 ~-----d~~~l~~~i-~~tklV~ie~pt~~~~~~~dl~~i~~la~~~gi~vivD~a~a~~~~~~p~-~~g~Divv~S~tK 208 (389)
T PRK05968 136 R-----DEEAVAKAL-PGAKLLYLESPTSWVFELQDVAALAALAKRHGVVTMIDNSWASPVFQRPI-TLGVDLVIHSASK 208 (389)
T ss_pred C-----CHHHHHHhc-ccCCEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcchhccCch-hcCCcEEEeeccc
Confidence 3 889999998 67999999999999999999999999999999999999999877532223 4678999999999
Q ss_pred cc-CCCc--eEEEEEecCCCCccccccccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15216 1595 IY-GPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLME 1671 (2602)
Q Consensus 1595 ~~-gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~ 1671 (2602)
.+ |+.+ .|+++.+++++++++.....+ ..+..+....+.+..+|+ .+..+.++..+.++++.+.|.+
T Consensus 209 ~l~g~~~~~gG~i~~~~~~~~~l~~~~~~~------~g~~~~~~~A~~~l~~L~----tl~~r~~~~~~~a~~la~~L~~ 278 (389)
T PRK05968 209 YLGGHSDTVAGVVAGSKEHIARINAEAYPY------LGAKLSPFEAWLLLRGLR----TLPLRMKAHEASALEIARRLKA 278 (389)
T ss_pred cccCCCCeEEEEEEECHHHHHHHHHHHHHh------CCCCCChHHHHHHHcccC----cHHHHHHHHHHHHHHHHHHHHh
Confidence 55 4543 588887777666554322111 112222222222223333 2456667777778888888887
Q ss_pred cCCcEEEeCCCC---C------CCCceEEEEEe-cCCcHHHHHhc--CCEEEccccccCCCC-------C-ChhHHHHHc
Q psy15216 1672 SIEEIYINGDMN---N------RIPHNLNISFN-FIEGESLLMAI--KDIAVSSGSACTSAS-------L-EPSYVLRAL 1731 (2602)
Q Consensus 1672 ~~~gl~i~~~~~---~------~~~~~~~~~~~-~~~~~~~~~~L--~gI~v~~g~~~~~~~-------~-~~~~~~~~~ 1731 (2602)
.|++..+..+. + ....+..|.+. +.+..++...| .++.++-|..+.--. . .+......+
T Consensus 279 -~p~v~~v~~p~l~~~~~~~~~g~g~~~sf~~~~~~~~~~f~~~L~~~~~~~s~G~~~slv~p~~~~~~~~~~~~~~~~~ 357 (389)
T PRK05968 279 -HPVVERVCHPALANHPPAGLSGTSGLFSFIFREGIDVRAFADALKLFRLGVSWGGHESLVVPAEVVLQQKAQPNSAARF 357 (389)
T ss_pred -CCCccEEECCCCCCChHHhCCCCceEEEEEECCHHHHHHHHHhCCccEEecCCCCCCceeeeCcccccccCCHHHHHhc
Confidence 78775443221 0 11224444443 22345677777 577777777665110 0 112233456
Q ss_pred CCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1732 GCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1732 ~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
|+++ +.||+|+|.+++++-++.+-++|+.
T Consensus 358 gi~~----~liR~SvGlE~~~dl~~dl~~al~~ 386 (389)
T PRK05968 358 GVSP----RSVRLHVGLEGTEALWADLEQALAA 386 (389)
T ss_pred CCCC----CeEEEEeccCCHHHHHHHHHHHHHH
Confidence 6653 8999999999888777777777764
|
|
| >PF01592 NifU_N: NifU-like N terminal domain; InterPro: IPR002871 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.7e-19 Score=191.07 Aligned_cols=95 Identities=51% Similarity=0.924 Sum_probs=87.8
Q ss_pred hhhhhhhhhhcCCCCcCcccCCCCcceeeeecCCCCccEEEEEEEEcCC-CcEEeeeeeccccchhHhhHHHHHHHHcCC
Q psy15216 1770 SYSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKN-GVITDAKFKTYGCGSAIASSSLVTEWVKGK 1848 (2602)
Q Consensus 1770 ~y~~~i~dh~~~p~~~g~~~~~~~~~~~~~~~~~~cgd~~~~~~~~~~~-~~i~~~~~~~~gc~~~~a~~s~~~~~~~g~ 1848 (2602)
||+++|++||.||+|.|.+++++. +.++.+||+|||.|+|||+|+++ |+|+|++|+++||++++||+||+|++++||
T Consensus 1 ~Y~~~i~~~~~nP~~~g~l~~~~~--~~~~~~n~~CGD~i~i~l~i~~~~~~I~d~~f~~~GC~~~~Asas~~~~~i~gk 78 (126)
T PF01592_consen 1 MYSDKILDHYRNPRNYGKLEDADA--GTGEAGNPSCGDEIRIYLKIDDDGGRIKDAKFQGFGCAISIASASMMCELIKGK 78 (126)
T ss_dssp HHHHHHHHHHHSTSSBSSSTTTSS--EEEEEEETTTTEEEEEEEEESSSTSBEEEEEEEEESSHHHHHHHHHHHHHHTTS
T ss_pred CchHHHHHHHhCCCCCCCCCCCCc--ceeeecCCCCCCEEEEEEEEecCCCeEEEEEEEeecChHHHHHHHHHHHHHcCC
Confidence 699999999999999999998873 48889999999999999999865 899999999999999999999999999999
Q ss_pred Chhhhhcccccchhhhhc
Q psy15216 1849 TLDEAMSIKNTDIAEELV 1866 (2602)
Q Consensus 1849 ~~~~~~~i~~~~i~~~l~ 1866 (2602)
|++||..|+..++.+.+-
T Consensus 79 ~l~ea~~i~~~~i~~~l~ 96 (126)
T PF01592_consen 79 TLEEALKITAEDIEEALG 96 (126)
T ss_dssp BHHHHHCHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 999999999877766654
|
These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents the N-terminal of NifU and homologous proteins. NifU contains two domains: an N-terminal and a C-terminal domain (IPR001075 from INTERPRO) []. These domains exist either together or on different polypeptides, both domains being found in organisms that do not fix nitrogen (e.g. yeast), so they have a broader significance in the cell than nitrogen fixation. ; GO: 0005506 iron ion binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly; PDB: 3LVL_A 4EB5_C 4EB7_C 1WFZ_A 2Z7E_C 2AZH_A 1XJS_A 1Q48_A 1R9P_A 2KQK_A .... |
| >PRK01773 hscB co-chaperone HscB; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.4e-19 Score=199.07 Aligned_cols=90 Identities=34% Similarity=0.467 Sum_probs=82.9
Q ss_pred chhhhcccccccccchhhhHHhhhhHHHHHhhcCchhHHHHHHHHc-CcccCCccccCCChHHHHHHhHhHHHHHHHhhc
Q psy15216 535 LYFNDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKLN-GIDLNTKLNLNFSHDFLEQQMKWRETLSIIKNK 613 (2602)
Q Consensus 535 ~~l~d~~~~~~~~~~~~~~~~~~~~n~ay~~l~~p~~ra~yll~~~-g~~~~~~~~~~~~~~~l~~~~e~~e~l~~~~~~ 613 (2602)
.+..|+|+..++.+|++|++||++||+||+|||||++||+|||+|+ |+++..++++.+||+|||+||||||+|+++...
T Consensus 31 ~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~L~~g~~~~~e~~~~~d~~fLme~ME~rE~lee~~~~ 110 (173)
T PRK01773 31 SLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIALNTGEQQNLEEKSTQDMAFLMQQMEWREQLEEIEQQ 110 (173)
T ss_pred HhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHHhccCCCCCcccccCCCHHHHHHHHHHHHHHHhhccc
Confidence 6789999999999999999999999999999999999999999999 999888889999999999999999999999888
Q ss_pred chHHHhHhhhc
Q psy15216 614 KDKVKFMALLQ 624 (2602)
Q Consensus 614 ~~~~~~~~~l~ 624 (2602)
.|.+++.++..
T Consensus 111 ~d~~~L~~l~~ 121 (173)
T PRK01773 111 QDEDALTAFSK 121 (173)
T ss_pred CCHHHHHHHHH
Confidence 77666655543
|
|
| >TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.1e-17 Score=208.91 Aligned_cols=297 Identities=13% Similarity=0.077 Sum_probs=199.2
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCC
Q psy15216 1404 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK 1483 (2602)
Q Consensus 1404 ~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd 1483 (2602)
...+.+.++..+.++... + .....+++++++|+++|.+++++++++|+++|+..++.++. ++||
T Consensus 33 ~~~~~~~~~~~~~~~~~~---g---------~~~~~~~Le~~lA~~~g~~~e~ilv~~gg~~a~~~~~~al~----~~gd 96 (346)
T TIGR03576 33 AGGFKIDEEDLELLETYV---G---------PAIFEEKVQELGREHLGGPEEKILVFNRTSSAILATILALE----PPGR 96 (346)
T ss_pred CCChhHHHHHHHHHHHhc---C---------CHHHHHHHHHHHHHHcCCCcceEEEECCHHHHHHHHHHHhC----CCCC
Confidence 455688888888887642 1 12578999999999999988999999999999999999997 8999
Q ss_pred EEEEcC---CCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccCCceEEEEecccccccccc---ChHHHHHH
Q psy15216 1484 HIITVQ---TEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQ---PILEIGEL 1557 (2602)
Q Consensus 1484 ~Vlv~~---~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~---~l~~I~~i 1557 (2602)
+|+++. |.|+++...++.. |+++... .++++++. .+++++|+++. ++++|.++ |+++|+++
T Consensus 97 ~Vli~~~d~p~~~s~~~~~~l~---ga~~~~~-------~~l~~l~~--~~~~~lIiitg-~s~~G~v~~~~~L~~i~~l 163 (346)
T TIGR03576 97 KVVHYLPEKPAHPSIPRSCKLA---GAEYFES-------DELSELKK--IDGTSLVVITG-STMDLKVVSEEDLKRVIKQ 163 (346)
T ss_pred EEEECCCCCCCchhHHHHHHHc---CCEEecc-------CCHHHHhh--CcCceEEEEEC-CCCCCcccCHHHHHHHHHH
Confidence 999864 5677766555544 7775332 24555433 35688888865 68999984 68899999
Q ss_pred hhhcCCEEEEecccccCccc-cc---CCCCCccEEEEcccccc-CCCceEEEEEecCCCCccccccccCCccccCCCCCc
Q psy15216 1558 CRSKGVIFHCDAAQAVGKID-IN---IQNYKVDLMSFSAHKIY-GPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTL 1632 (2602)
Q Consensus 1558 a~~~gi~vivD~a~~~g~~~-~~---l~~~~~D~~v~S~~K~~-gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~ 1632 (2602)
|++||+++++|+||+.+... .+ ....+.|+++.|+||.+ |++ +||+++++++++.+..... .+.. +.
T Consensus 164 a~~~~~~livDEAy~~~~~~~~~~~~~~~~~~divv~s~SKalaG~r-~G~v~~~~~li~~l~~~~~------~~~~-s~ 235 (346)
T TIGR03576 164 AKSKEAIVLVDDASGARVRRLYGQPPALDLGADLVVTSTDKLMDGPR-GGLLAGRKELVDKIKSVGE------QFGL-EA 235 (346)
T ss_pred HHHcCCEEEEECCccccccccCCCCCHHHcCCcEEEeccchhccccc-eEEEEeCHHHHHHHHHhhc------Cccc-Cc
Confidence 99999999999999876422 11 12235689999999944 777 4999999887776654331 1112 34
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecCCcHHHHHh-c--CCE
Q psy15216 1633 ATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMA-I--KDI 1709 (2602)
Q Consensus 1633 ~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-L--~gI 1709 (2602)
+.+.+.+..++|+... .+..++.++++++.+.+.+.. +.+..++. +...+.++..+..++... | +||
T Consensus 236 ~~~~~~aa~~aL~~~~--~~~~~~~l~~r~~~~~~~l~~----~~~~~~~~----~f~~~~~~~~~~~~~~~~ll~~~gV 305 (346)
T TIGR03576 236 QAPLLAAVVRALEEFE--LSRIRDAFKRKEEVYLRLFDK----LNVERTPT----GFVIKGVEEEKLIEIGLDLLRNYGI 305 (346)
T ss_pred cHHHHHHHHHHHhhcc--HHHHHHHHHHHHHHHHHHHHh----CCCCcCCC----eEEEEeCCCCCHHHHHHHHHHhCCE
Confidence 5556666667776422 244556666666666666653 22221111 122222221122234333 3 799
Q ss_pred EEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCC-CHHHHHHHHHHHHHh
Q psy15216 1710 AVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFT-TEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1710 ~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~-t~edid~li~~L~~~ 1765 (2602)
.++++..|... .+++|||++... +..++++++++|++.
T Consensus 306 ~v~~~~~f~~~------------------~~~vRis~~~~~~~~~~~~~~~~al~~~ 344 (346)
T TIGR03576 306 ITITAVGMPGA------------------SKTLRFDLAAKDAERIGDDYLVEAVKDS 344 (346)
T ss_pred EEeCCcccCCC------------------CCeEEEEEecChHHhcCHHHHHHHHHhc
Confidence 99987765211 279999998321 112799999999863
|
Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog. |
| >PRK06234 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.4e-17 Score=215.28 Aligned_cols=301 Identities=14% Similarity=0.138 Sum_probs=202.3
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHH-HHhCCcEEEEeccC
Q psy15216 1437 KAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDGFRVTYLKPK 1515 (2602)
Q Consensus 1437 ~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~-~~~~G~~v~~v~~~ 1515 (2602)
....++++++++++|.+ ++++++|++.|+..++.++. ++||+|+++.+.|+++...... +...|+++++++..
T Consensus 64 p~~~~Le~~iA~~~g~~--~~l~~~sG~~Ai~~al~~ll----~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~ 137 (400)
T PRK06234 64 PTSTEVENKLALLEGGE--AAVVAASGMGAISSSLWSAL----KAGDHVVASDTLYGCTFALLNHGLTRYGVEVTFVDTS 137 (400)
T ss_pred ccHHHHHHHHHHHhCCC--cEEEEcCHHHHHHHHHHHHh----CCCCEEEEecCccchHHHHHHHHHhhCCeEEEEECCC
Confidence 34678999999999964 67889999999999988876 8999999999999987766533 45569999999753
Q ss_pred CCCCcChhHHHhhccCCceEEEEeccccccccccChHHHHHHhhhc--CCEEEEecccccCcccccCCCCCccEEEEccc
Q psy15216 1516 NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSK--GVIFHCDAAQAVGKIDINIQNYKVDLMSFSAH 1593 (2602)
Q Consensus 1516 ~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~~ia~~~--gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~ 1593 (2602)
|+++++++++++|++|++++|+||||.+.|+++|.++|++| |+++++|++++.+.....+ .+++|++++|++
T Consensus 138 -----d~e~l~~~i~~~tklI~iesP~NPtG~v~dl~~I~~la~~~~~~i~livDea~~~~~~~~~l-~~g~Divv~S~s 211 (400)
T PRK06234 138 -----NLEEVRNALKANTKVVYLETPANPTLKVTDIKAISNIAHENNKECLVFVDNTFCTPYIQRPL-QLGADVVVHSAT 211 (400)
T ss_pred -----CHHHHHHHhccCCeEEEEECCCCCCCCcCCHHHHHHHHHhcCCCCEEEEECCCCchhcCCch-hhCCcEEEeecc
Confidence 79999999999999999999999999999999999999997 9999999999877543333 457899999999
Q ss_pred cccCCCc---eEEEEEecCCCCccccccccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15216 1594 KIYGPKG---IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLM 1670 (2602)
Q Consensus 1594 K~~gp~G---~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~ 1670 (2602)
|+++++| .|+++.++++++.++.... ......+.+....+.+..+|+ .++.++++..+++.++.+.|.
T Consensus 212 K~l~g~g~~~gG~v~~~~~~~~~l~~~~~-----~~~~g~~l~p~~a~l~~~~l~----tl~~r~~~~~~na~~~a~~L~ 282 (400)
T PRK06234 212 KYLNGHGDVIAGFVVGKEEFINQVKLFGI-----KDMTGSVIGPFEAFLIIRGMK----TLQIRMEKHCKNAMKVAKFLE 282 (400)
T ss_pred ccccCCCCceeEEEEecHHHHHHHHHHHH-----HHhcCCCCCHHHHHHHHhccC----cHHHHHHHHHHHHHHHHHHHH
Confidence 9777665 5999998876555532110 001112222222222223333 234556666777888888887
Q ss_pred hcCCcEE-EeCCC--CC-----------CCCceEEEEEecC--CcHHHHHhc--CCEEEccccccCC---C-----CCCh
Q psy15216 1671 ESIEEIY-INGDM--NN-----------RIPHNLNISFNFI--EGESLLMAI--KDIAVSSGSACTS---A-----SLEP 1724 (2602)
Q Consensus 1671 ~~~~gl~-i~~~~--~~-----------~~~~~~~~~~~~~--~~~~~~~~L--~gI~v~~g~~~~~---~-----~~~~ 1724 (2602)
+ .|.+. +.-|. ++ ....+..|.+.+. ....|...| .++..+-|...+- + ...+
T Consensus 283 ~-~~~V~~V~~p~l~~~~~~~~~~~~~~~~g~l~s~~l~~~~~~~~~f~~~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~ 361 (400)
T PRK06234 283 S-HPAVEKVYYPGLESFEYYELAKKQMSLPGAMISFELKGGVEEGKVVMNNVKLATLAVSLGDAETLIQHPASMTHSPYT 361 (400)
T ss_pred c-CCCeeEEECCCCCCCCcHHHHHHhCCCCCceEEEEecCcHHHHHHHHHhCCcceEeccCCCCCceecCCccCCCCCCC
Confidence 6 56553 22111 11 1233444554421 124566666 3444444433221 0 0111
Q ss_pred hHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHH
Q psy15216 1725 SYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK 1763 (2602)
Q Consensus 1725 ~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~ 1763 (2602)
.-.....|+++ +.||||+|..+..+-++.+-++|+
T Consensus 362 ~~~~~~~gi~~----~l~R~svGlE~~~dl~~dl~~al~ 396 (400)
T PRK06234 362 AEERKEAGISD----GLVRLSVGLEDVDDIIADLKQALD 396 (400)
T ss_pred HHHHHhcCCCC----CeEEEEeCCCCHHHHHHHHHHHHH
Confidence 12233456653 889999998765555555555555
|
|
| >cd00617 Tnase_like Tryptophanase family (Tnase) | Back alignment and domain information |
|---|
Probab=99.78 E-value=1e-17 Score=214.59 Aligned_cols=351 Identities=18% Similarity=0.163 Sum_probs=221.9
Q ss_pred HHHHHhcCCCccccceeeeeceeeeccCCCCCCCHHHHHHHHHHHhh-ccCCCCCccchhHHHHHHHHHHHHHHHHHHhC
Q psy15216 1373 KNSLEMTGFKAESSGIVMRPYTNIVFKDATTPIDPRVVDKMIPYLRV-QFGNPASRNHIYGWTAEKAIEKARNEVAQLIY 1451 (2602)
Q Consensus 1373 ~~aL~~~g~~~~~~ei~~iP~~~v~L~~~~~~~~~~v~eal~~~l~~-~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g 1451 (2602)
.++|+++|+.+.....+ .+++|--+-.....+.++....+.. ...|..+ ....++|+.+++++|
T Consensus 3 ~~~l~~~g~n~~~l~~~-----~v~iDlltds~t~ams~~~~~a~~~gd~~Y~~~----------~g~~~Leeaia~~~g 67 (431)
T cd00617 3 ERALKEAGYNVFLLRSE-----DVYIDLLTDSGTGAMSDYQWAAMMLGDEAYAGS----------KSFYDLEDAVQDLFG 67 (431)
T ss_pred HHHHHHcCCCEEeCCCC-----CcCCCCCCCCCcHHHHHHHHHHHHhCCCccCCC----------CCHHHHHHHHHHHHC
Confidence 36889999998765544 2222211111112333343444322 1111111 225789999999999
Q ss_pred CCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCC----------CCCcC
Q psy15216 1452 ADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN----------NGLIT 1521 (2602)
Q Consensus 1452 ~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~----------~~~id 1521 (2602)
.+ ++++|+|+|.|+++++.++. +|||+| ++++.|+++...+..+ |++++.+++++ .|.+|
T Consensus 68 ~~--~vv~t~~Gt~Al~la~~al~----~pGD~V-~~~~~f~~~~~~i~~~---Ga~pv~v~i~~~~~~~~~~pf~gniD 137 (431)
T cd00617 68 FK--HIIPTHQGRGAENILFSILL----KPGRTV-PSNMHFDTTRGHIEAN---GAVPVDLVIDEAHDAQELIPFKGNID 137 (431)
T ss_pred CC--eEEEcCCHHHHHHHHHHHhC----CCCCEE-ccCCcccchHHHHHhC---CCEeEEEecccccccccccCCCCCcC
Confidence 75 79999999999999999887 899988 6888999988777766 99999998863 25599
Q ss_pred hhHHHhhccCC----ceEEEEecccccc-ccccC---hHHHHHHhhhcCCEEEEecccccC-----------cccccCCC
Q psy15216 1522 LSQLEEKICSD----TILVSVMLVNNEI-GVIQP---ILEIGELCRSKGVIFHCDAAQAVG-----------KIDINIQN 1582 (2602)
Q Consensus 1522 ~d~l~~~i~~~----t~lv~l~~~~n~t-G~~~~---l~~I~~ia~~~gi~vivD~a~~~g-----------~~~~~l~~ 1582 (2602)
+++|+++|+++ +++|+++.++||+ |.+++ +++|.++|++||+++|.|++++++ ....++.+
T Consensus 138 ~e~Le~~I~~~~~~~~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~gi~li~DaAr~~~na~~i~~r~~g~~~~si~e 217 (431)
T cd00617 138 VAKLEKLIDEVGAENIPYIVLTITNNTAGGQPVSMANLREVRELAHKYGIPVVLDAARFAENAYFIKEREEGYRDKSIAE 217 (431)
T ss_pred HHHHHHHhCcccCCCccEEEEECCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhHhhhhhhhcccccccCCCHHH
Confidence 99999999876 7899999999998 89987 457799999999999999998753 11111111
Q ss_pred ------CCccEEEEcccc-ccCCCceEEEEEecC-CCCccccccccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHH
Q psy15216 1583 ------YKVDLMSFSAHK-IYGPKGIGALYIRRN-PRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEE 1654 (2602)
Q Consensus 1583 ------~~~D~~v~S~~K-~~gp~G~G~l~~~~~-~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~ 1654 (2602)
...|.+++|++| ..++.| |+++.+++ ++++++.... ..+.....|..+...+.|+..+|+.... ...
T Consensus 218 i~~e~~s~sd~~~mS~~K~~~~~~G-G~i~~~d~~l~~~~~~~~~--~~~~~~~~gG~~~r~~~A~A~gL~e~~~--~~~ 292 (431)
T cd00617 218 IAREMFSYADGCTMSAKKDGLVNIG-GFLALRDDELYEEARQRVV--LYEGFVTYGGMAGRDMEALAQGLREAVE--EDY 292 (431)
T ss_pred HHHHhhccCCEEEEEeecCCCCccc-eEEEeCcHHHHHHHHHhcc--ccCCccccccccHHHHHHHHHHHHhccc--HHH
Confidence 137899999999 556665 89999874 6665543210 0111223455566666666556653111 123
Q ss_pred HHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEec---------CCcHHHHHhc---CCEEEcc-ccccCCCC
Q psy15216 1655 LKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF---------IEGESLLMAI---KDIAVSS-GSACTSAS 1721 (2602)
Q Consensus 1655 ~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~---------~~~~~~~~~L---~gI~v~~-g~~~~~~~ 1721 (2602)
..+..+.++++.+.|.+ .|+.+..|... +...+..+. .++..+...| .||.+.. |+...+.
T Consensus 293 l~~~~~~r~~l~~~L~~--~G~~v~~P~Gg---h~v~~d~~~~~~~~~~~~~~~~~la~~L~~e~gV~~~~~g~~~~~~- 366 (431)
T cd00617 293 LRHRVEQVRYLGDRLDE--AGVPIVEPAGG---HAVFIDAREFLPHIPQEQFPAQALAAELYLEAGVRAVELGIFSAGR- 366 (431)
T ss_pred HHHHHHHHHHHHHHHHH--CCCCccCCCcc---eEEEEEhHHhcCCCCcccCcHHHHHHHHHHHcCeeEEeecceeccc-
Confidence 33344466889999987 37766543221 222222211 1355566555 5777543 3321110
Q ss_pred CChhHHHHHcCCCccccCCeEEEecCC-CCCHHHHHHHHHHHHHh
Q psy15216 1722 LEPSYVLRALGCNDELAHSSIRFTIGR-FTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1722 ~~~~~~~~~~~~~~~~~~~~iRls~~~-~~t~edid~li~~L~~~ 1765 (2602)
.+ .-+......-..+||++.. --|.+++++++++|...
T Consensus 367 -~~-----~~~~~~~~~~~~~rl~~prr~~t~~~~~~~~~~~~~~ 405 (431)
T cd00617 367 -DP-----NTGENKYPELELVRLAIPRRVYTQDHMDYVAAAVIAL 405 (431)
T ss_pred -CC-----CCCcccCCccceeEEeccccccCHHHHHHHHHHHHHH
Confidence 00 0000000012679999875 34889999999999873
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia. |
| >PRK07810 O-succinylhomoserine sulfhydrylase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.6e-17 Score=214.08 Aligned_cols=301 Identities=15% Similarity=0.126 Sum_probs=201.0
Q ss_pred hhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHH-HHHHhCCcEE
Q psy15216 35 YGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSI-RKLENDGFRV 113 (2602)
Q Consensus 35 ~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~-~~~~~~G~~v 113 (2602)
+++...+..+++++.+|+++|.+ +.++++|++.|+..++.++. ++||+|+++...|+.....+ ..++..|+++
T Consensus 64 Y~r~~~p~~~~le~~lA~l~g~~--~al~~~sG~~Ai~~~l~all----~~Gd~Vl~~~~~~~~t~~~~~~~~~~~G~~v 137 (403)
T PRK07810 64 YSRYGNPTVSMFEERLRLIEGAE--ACFATASGMSAVFTALGALL----GAGDRLVAARSLFGSCFVVCNEILPRWGVET 137 (403)
T ss_pred eeCCCCchHHHHHHHHHHHhCCC--cEEEECChHHHHHHHHHHHh----CCCCEEEEccCCcchHHHHHHHHHHHcCcEE
Confidence 34334456789999999999965 77888888999999988876 89999999998886655544 3456779999
Q ss_pred EEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHhcCCEEEEecccccccccccCCCCCccEEE
Q psy15216 114 TYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMS 193 (2602)
Q Consensus 114 ~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~~g~~livD~a~a~g~~~~dl~~~~~D~~~ 193 (2602)
++++. .|+++++++++++|++|++++|+||||.+.|+++|+++||++|+++++|++++.+.....+ ..++|+++
T Consensus 138 ~~vd~-----~d~~~l~~ai~~~tklV~~esp~Nptg~v~dl~~I~~la~~~g~~vivD~a~a~~~~~~~~-~~gaDivv 211 (403)
T PRK07810 138 VFVDG-----EDLSQWEEALSVPTQAVFFETPSNPMQSLVDIAAVSELAHAAGAKVVLDNVFATPLLQRGL-PLGADVVV 211 (403)
T ss_pred EEECC-----CCHHHHHHhcCcCceEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCCccccCChh-hcCCcEEE
Confidence 99974 3899999999999999999999999999999999999999999999999999877653322 46889999
Q ss_pred eccccccCCCC---cEEEEEecCCCC-cccceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy15216 194 FSAHKIYGPKG---IGALYIRRNPRT-RIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRL 269 (2602)
Q Consensus 194 ~S~~K~~Gp~G---~G~l~~~~~~~~-~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l 269 (2602)
+|++|+++++| .|+++.+++.+. .++.... .....++....+.+..+|+. +..+.++..+++.++
T Consensus 212 ~S~tK~l~g~g~~~gG~v~~~~~~~~~~l~~~~~-------~~g~~~s~~~a~l~l~~L~t----l~~R~~~~~~~a~~~ 280 (403)
T PRK07810 212 YSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMR-------HTGPALSAFNAWVLLKGLET----LALRVRHSNASALRI 280 (403)
T ss_pred ccCCceecCCcCceeEEEEeChHHHHHHHHHHHH-------HhCCCCCHHHHHHHHhccCc----HHHHHHHHHHHHHHH
Confidence 99999887776 588888765443 2332211 11123344433333344443 455566667777777
Q ss_pred HHHHhhccCceE-EeCC--CCC-----------CCCceEEEEEccc------ChhHHHHHhC--CeEEcccccCCC----
Q psy15216 270 YNGLMESIEEIY-INGD--MNN-----------RIPHNLNISFNFI------EGESLLMAIK--DIAVSSGSACTS---- 323 (2602)
Q Consensus 270 ~~~L~~~~~g~~-l~~~--~~~-----------~~~~~~~~~~~~~------~~~~~~~~L~--gI~v~~g~~~~~---- 323 (2602)
.+.|.+ .|.+. ++-| +++ .....+.|.+... ...++++.|+ .+.++-|...+-
T Consensus 281 a~~L~~-~p~v~~V~yP~l~~~p~~~~~~~~~~g~g~~~s~~l~~~~~~~~~~~~~f~~~l~l~~~~~slG~~~sl~~~p 359 (403)
T PRK07810 281 AEFLEG-HPAVRWVRYPFLPSHPQYDLAKRQMSGGGTVVTFELDAPEDAAKKRAFEVLDKLRVIDISNNLGDAKSLITHP 359 (403)
T ss_pred HHHHhc-CCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCCCCcCHHHHHHHHHhCCceEEeccCCCCcceeeCC
Confidence 777766 56553 2211 111 1122344444321 1245666663 444444432221
Q ss_pred CC----CChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHH
Q psy15216 324 AS----LEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK 367 (2602)
Q Consensus 324 ~~----~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~ 367 (2602)
.. ..+.-.+...|+. ++.+|+|+|.. +++.+++-|+
T Consensus 360 ~~~~h~~~~~~~~~~~gi~----~~lvR~svGlE----~~~dli~dl~ 399 (403)
T PRK07810 360 ATTTHRAMGPEGRAAIGLG----DGVVRLSVGLE----DTDDLIADLD 399 (403)
T ss_pred CccccccCCHHHHHhcCCC----CCeEEEEeccC----CHHHHHHHHH
Confidence 10 0111223456665 37899999974 4555555554
|
|
| >PRK09064 5-aminolevulinate synthase; Validated | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.3e-17 Score=216.75 Aligned_cols=319 Identities=18% Similarity=0.152 Sum_probs=215.1
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCC
Q psy15216 1404 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK 1483 (2602)
Q Consensus 1404 ~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd 1483 (2602)
..++.+++++.+.++.....++ .+...+.......++++++++++|. + ..++.+++++++..++..+.. ..+++
T Consensus 60 ~~~p~v~~a~~~~~~~~~~~~~--~s~~~~g~~~~~~~l~~~la~~~g~-~-~~~~~~sG~~an~~ai~~l~~--~~~~~ 133 (407)
T PRK09064 60 GQHPKVIEAMIEALDRCGAGAG--GTRNISGTNHYHVELERELADLHGK-E-AALVFTSGYVSNDATLSTLAK--LIPDC 133 (407)
T ss_pred CCCHHHHHHHHHHHHHcCCCCC--CcCcCccCHHHHHHHHHHHHHHhCC-C-cEEEECcHHHHHHHHHHHHhC--CCCCC
Confidence 5678899999998876432221 1111122345678999999999995 3 445556667888877777651 24788
Q ss_pred EEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhcc----CCceEEEEeccccccccccChHHHHHHhh
Q psy15216 1484 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKIC----SDTILVSVMLVNNEIGVIQPILEIGELCR 1559 (2602)
Q Consensus 1484 ~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~----~~t~lv~l~~~~n~tG~~~~l~~I~~ia~ 1559 (2602)
.|+.....|.+....+... ++.+..++. .|++++++.+. +++++|++++++|++|.+.|+++|.++|+
T Consensus 134 ~i~~~~~~h~s~~~~~~~~---~~~~~~~~~-----~d~~~le~~l~~~~~~~~~~v~~~~v~s~~G~~~~l~~i~~l~~ 205 (407)
T PRK09064 134 VIFSDELNHASMIEGIRRS---RCEKHIFRH-----NDVAHLEELLAAADPDRPKLIAFESVYSMDGDIAPIAEICDLAD 205 (407)
T ss_pred EEEEeCcchHHHHHHHHHc---CCcEEEECC-----CCHHHHHHHHHhccCCCCeEEEEeCCCCCCccccCHHHHHHHHH
Confidence 8888878888876665543 666655542 36788887775 57899999999999999999999999999
Q ss_pred hcCCEEEEecccccCcc-cc-----cCCC--CCccEEEEccccccCCCceEEEEEecCCCCccccccccCCccccCCCCC
Q psy15216 1560 SKGVIFHCDAAQAVGKI-DI-----NIQN--YKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGT 1631 (2602)
Q Consensus 1560 ~~gi~vivD~a~~~g~~-~~-----~l~~--~~~D~~v~S~~K~~gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt 1631 (2602)
+||+++++|++|+.|.. +. .... ..+|+++.|++|.+|+.| ||++.++++++.+.....+ ..+ ..+
T Consensus 206 ~~~~~livDEa~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g~~G-G~~~~~~~~~~~l~~~~~~----~~~-t~~ 279 (407)
T PRK09064 206 KYNALTYLDEVHAVGMYGPRGGGIAERDGLMDRIDIIEGTLAKAFGVMG-GYIAGSAALVDAVRSYAPG----FIF-TTS 279 (407)
T ss_pred HcCCEEEEECCCcccccCCCCCChHHhcCCCCCCeEEEEecchhhhccC-ceEecCHHHHHHHHHhCcc----ccc-cCc
Confidence 99999999999985532 11 1111 136899999999888887 9998887766555332111 111 223
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEec-CCcHHHHHhc---C
Q psy15216 1632 LATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGESLLMAI---K 1707 (2602)
Q Consensus 1632 ~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~L---~ 1707 (2602)
.+....+++.+++++.... ...+++..++++++.+.|.+ .|+.+.++. ..+..+.++. ....++...| +
T Consensus 280 ~~~~~~~aa~~al~~~~~~-~~~~~~~~~~~~~l~~~L~~--~g~~~~~~~----~~iv~i~~~~~~~~~~l~~~L~~~~ 352 (407)
T PRK09064 280 LPPAIAAAALASIRHLKES-NEERERHQERAAKLKAALDA--AGIPVMPNE----SHIVPVMVGDPEKCKKASDMLLEEH 352 (407)
T ss_pred CCHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHH--cCCCCCCCC----CCEEEEEeCCHHHHHHHHHHHHHhC
Confidence 3444555566777765443 34467888899999999987 355544321 1223333322 1234565554 4
Q ss_pred CEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1708 DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1708 gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
||.+++...+..+ ...+++|++++.++|.+|+++++++|++.
T Consensus 353 gi~v~~~~~p~~~----------------~~~~~lRis~~~~~t~edi~~l~~~l~~~ 394 (407)
T PRK09064 353 GIYVQPINYPTVP----------------RGTERLRITPTPFHTDEMIDHLVEALVEV 394 (407)
T ss_pred CEEEeeECCCCCC----------------CCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 8999864322111 11257999999999999999999999973
|
|
| >PRK05664 threonine-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.6e-17 Score=210.90 Aligned_cols=263 Identities=13% Similarity=0.064 Sum_probs=188.1
Q ss_pred HHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCC
Q psy15216 1440 EKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGL 1519 (2602)
Q Consensus 1440 ~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ 1519 (2602)
.++|++++++++. ++|++|+|+++++.+++. . .+||+|++++|+|+.+...++.+ |++++.++.+
T Consensus 52 ~~Lr~~ia~~~~~--~~I~it~Gs~~al~~~~~--~----~~gd~v~v~~P~y~~~~~~~~~~---g~~~~~v~~~---- 116 (330)
T PRK05664 52 DGLEAAARAYYGA--PQLLPVAGSQAAIQALPR--L----RAPGRVGVLSPCYAEHAHAWRRA---GHQVRELDEA---- 116 (330)
T ss_pred HHHHHHHHHHhCC--CCEEECcCHHHHHHHHHH--c----cCCCEEEEcCCChHHHHHHHHHc---CCeEEEechh----
Confidence 5779999999985 599999999999988752 2 69999999999999988877766 9999988753
Q ss_pred cChhHHHhhccCCceEEEEeccccccccccC---hHHHHHHhhhcCCEEEEecccccCcc--c-ccCCCCCccEEEEccc
Q psy15216 1520 ITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQAVGKI--D-INIQNYKVDLMSFSAH 1593 (2602)
Q Consensus 1520 id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~---l~~I~~ia~~~gi~vivD~a~~~g~~--~-~~l~~~~~D~~v~S~~ 1593 (2602)
++++++ ++++++++++||||||.+++ +++|+++|+++|+++|+|+++..... + ..+...+.-+++.||+
T Consensus 117 ----~~~~~~-~~~~~v~l~nP~NPTG~~~s~~~l~~l~~~~~~~~~~iI~DE~y~~~~~~~s~~~~~~~~~vi~~~SfS 191 (330)
T PRK05664 117 ----EVEAAL-DSLDVLVVVNPNNPTGRRFDPARLLAWHARLAARGGWLVVDEAFMDNTPQHSLAACAHRPGLIVLRSFG 191 (330)
T ss_pred ----hHhhhh-cCCCEEEEeCCcCCCCCccCHHHHHHHHHHHHhcCCEEEEECCcccCCCcccccccccCCCEEEEeecc
Confidence 455555 46889999999999999999 45566667889999999999853321 1 1222212237788999
Q ss_pred cccCCCc--eEEEEEecCCCCccccccccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15216 1594 KIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLME 1671 (2602)
Q Consensus 1594 K~~gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~ 1671 (2602)
|.+|++| +||+++++++++.+..... ..+.+.....++..+|... ...+..++++.+.++++.+.|.+
T Consensus 192 K~~gl~GlRiG~~v~~~~l~~~~~~~~~---------~~~~~~~~~~~~~~~L~~~-~~~~~~~~~~~~~r~~l~~~L~~ 261 (330)
T PRK05664 192 KFFGLAGARLGFVLAEPALLRALAELLG---------PWTVSGPTRWLAQAALADT-PWQRRQRERLLAASQRLAALLRR 261 (330)
T ss_pred ccccCCCcceEEEEeCHHHHHHHHHhcC---------CCCCCHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998888 8999998877666643321 1233444445555666521 23456677888889999999987
Q ss_pred cCCcEEEeCCCCCCCCceEEEEEecCCcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCC
Q psy15216 1672 SIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRF 1749 (2602)
Q Consensus 1672 ~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~ 1749 (2602)
. ++. + .. ....+++++..+..++...| +||.++. |..+ +++||+++.
T Consensus 262 -~-~~~---~-~~--~~~~f~~~~~~~~~~~~~~l~~~gi~v~~---f~~~-------------------~~iRis~~~- 310 (330)
T PRK05664 262 -H-GLT---P-AG--GCALFQWVRTEDAAALHEFLARRGILTRL---FEQP-------------------ASLRFGLPA- 310 (330)
T ss_pred -C-CCc---c-cC--CcceEEEEecCCHHHHHHHHHHCCeEEEE---CCCC-------------------CeEEEECCC-
Confidence 2 332 1 11 11233444444556666666 7999962 3221 689999984
Q ss_pred CCHHHHHHHHHHHHH
Q psy15216 1750 TTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1750 ~t~edid~li~~L~~ 1764 (2602)
+.+++++++++|++
T Consensus 311 -~~~~~~~l~~al~~ 324 (330)
T PRK05664 311 -DEADWARLDQALLA 324 (330)
T ss_pred -CHHHHHHHHHHHHH
Confidence 67889999999986
|
|
| >PRK09440 avtA valine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.9e-18 Score=220.80 Aligned_cols=302 Identities=16% Similarity=0.074 Sum_probs=193.6
Q ss_pred HHHHHHHHHHHh------CCCCCcEEEeCCHHHHHHHHHHhhhhh-hccCCCEEEE-cCCCCcchHHHHHHHH-hCCcEE
Q psy15216 1439 IEKARNEVAQLI------YADPREIIWTSGATESNNLAIKGAAHF-YKKRGKHIIT-VQTEHKSVLDSIRKLE-NDGFRV 1509 (2602)
Q Consensus 1439 ~~~lr~~ia~~~------g~~~~~iv~t~gaT~al~~al~~l~~~-~~~~gd~Vlv-~~~~~~s~~~~~~~~~-~~G~~v 1509 (2602)
..++|+++++++ ++++++|++|+|+++|+.+++.++... ..++||.|++ .+|+|+.+........ ..+..+
T Consensus 76 ~~~LR~aia~~~~~~~g~~v~~~~I~it~Ga~~al~~~~~~l~~~~~~~~gd~v~i~~~P~y~~y~~~~~~~~~~~~~~~ 155 (416)
T PRK09440 76 KDELIEALAALLNERYGWNISPQNIALTNGSQSAFFYLFNLFAGRRADGSLKKILFPLAPEYIGYADAGLEEDLFVSYRP 155 (416)
T ss_pred CHHHHHHHHHHHHHHhCCCCChhhEEEccChHHHHHHHHHHHhccccCCCCCeEEEecCCCchhhHHHhhccCceeeccc
Confidence 456777777776 368889999999999999999988610 0026899999 6999999876543221 112222
Q ss_pred EEeccCC---CCCcChhHHHhhccCCceEEEEeccccccccccC---hHHHHHHhhhcCCEEEEecccccCcccc---cC
Q psy15216 1510 TYLKPKN---NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQAVGKIDI---NI 1580 (2602)
Q Consensus 1510 ~~v~~~~---~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~---l~~I~~ia~~~gi~vivD~a~~~g~~~~---~l 1580 (2602)
..++++. ++.+|+++++ +.++++++++++|+||||.+++ +++|+++|++||+++|+|++|+...... +.
T Consensus 156 ~~~~~~~~~~~~~~d~~~l~--~~~~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~ 233 (416)
T PRK09440 156 NIELLPEGQFKYHVDFEHLH--IDEDTGAICVSRPTNPTGNVLTDEELEKLDALARQHNIPLLIDNAYGPPFPGIIFSEA 233 (416)
T ss_pred ccccccccccccCCCHHHcc--cCCCceEEEEecCCCCCCccCCHHHHHHHHHHHHHcCCcEEEeCCccccCCCcchhhc
Confidence 3333333 2568999997 4678899999999999999999 6788889999999999999986321111 11
Q ss_pred CC--CCccEEEEccccccCCCc--eEEEEEecCCCCccccccccCCccccCCCCCcchhHHHHHHHHHHH--HHHHHH-H
Q psy15216 1581 QN--YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRL--ARIEMK-E 1653 (2602)
Q Consensus 1581 ~~--~~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~--~~~~~~-~ 1653 (2602)
.. .+.-+++.||+|+ +++| +||+++++++++.+..... ....+.+...+.++..++.. ...... .
T Consensus 234 ~~~~~~~vI~~~SfSK~-~~pGlRiG~~i~~~~l~~~~~~~~~-------~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~ 305 (416)
T PRK09440 234 TPLWNPNIILCMSLSKL-GLPGVRCGIVIADEEIIEALSNMNG-------IISLAPGRLGPAIAAEMIESGDLLRLSETV 305 (416)
T ss_pred CccccCCeEEEeccccc-CCCcceEEEEeCCHHHHHHHHHHHH-------HhccCCCcHHHHHHHHHhccchHHHHHHHH
Confidence 11 1234777899995 6677 8999998877666643321 11234455555556566651 112222 2
Q ss_pred HHHHHHHHHHHHHHHHhhcCCc--EEEeCCCCCCCCceEEEEEec--CCcHHHHHhc--CCEEEccccccCCCCCChhHH
Q psy15216 1654 ELKRILFLQKRLYNGLMESIEE--IYINGDMNNRIPHNLNISFNF--IEGESLLMAI--KDIAVSSGSACTSASLEPSYV 1727 (2602)
Q Consensus 1654 ~~~~~~~l~~~l~~~L~~~~~g--l~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~ 1727 (2602)
.+..++++++.+++.|.+.+++ +.+..+... ....+.++. .+..++...+ +||.+.+|..|....
T Consensus 306 ~~~~~~~r~~~~~~~L~~~l~~~~~~~~~p~gg---~fiw~~~~~~~~~~~~~~~~l~~~gV~v~pg~~F~~~~------ 376 (416)
T PRK09440 306 IRPFYRQKVQLAIALLRRYLPDEPCLIHKPEGA---IFLWLWFKDLPITTEELYQRLKARGVLVVPGHYFFPGL------ 376 (416)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCeEEecCCCc---eEEEEECCCCCCCHHHHHHHHHHCCEEEechHhhCCCC------
Confidence 4555666677777777653332 333322111 112222232 2445566555 799999998775320
Q ss_pred HHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1728 LRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1728 ~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
+.......+++||+++. +.++++.++++|++.
T Consensus 377 ----~~~~~~~~~~iRis~~~--~~~~l~~~i~~l~~~ 408 (416)
T PRK09440 377 ----DEDWPHAHQCIRMNYVQ--DDEEIEKGIAILAEE 408 (416)
T ss_pred ----ccccCCcCceEEEEecC--CHHHHHHHHHHHHHH
Confidence 00000012689999973 689999999999873
|
|
| >PLN02880 tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.3e-17 Score=218.68 Aligned_cols=309 Identities=16% Similarity=0.168 Sum_probs=214.8
Q ss_pred cchhhhHHHHHHHHHHHHHHHhCCCCC-------cEEEeCCHHHHHHHHHHhccccccc-------CCCEEEEcCCCCcc
Q psy15216 33 HIYGWTAEKAIEKARNEVAQLIYADPR-------EIIWTSGATESNNLAIKGAAHFYKK-------RGKHIITVQTEHKS 98 (2602)
Q Consensus 33 ~~~~~~~~~~~~~~r~~lA~~~g~~~~-------~Iv~t~g~T~al~~~~~~l~~~~~~-------~gd~Vlv~~~~~~s 98 (2602)
+..+.....+..++.+++++++|.+.+ ..++|+|+|+|+..++.+......+ +.-.|++++..|.|
T Consensus 114 ~~~sp~~~~lE~~vi~wl~~l~g~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~~~~~~g~~~~~~~vv~~S~~aH~S 193 (490)
T PLN02880 114 WITSPAATELEMIVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGKNALEKLVVYASDQTHSA 193 (490)
T ss_pred cccCcccHHHHHHHHHHHHHHhCCCchhhcCCCCceEEcCccHHHHHHHHHHHHHHHHHHhcccccCCeEEEEcCCchHH
Confidence 334555667888999999999998753 3789999999999888877643221 22367789999999
Q ss_pred cHHHHHHHHhCCc---EEEEeccCC--CCccChHHHHhhccC------CceEEEEecccCcccccccHHHHHHHHHhcCC
Q psy15216 99 VLDSIRKLENDGF---RVTYLKPKN--NGLITLSQLEEKICS------DTILVSVMLVNNEIGVIQPILEIGELCRSKGV 167 (2602)
Q Consensus 99 ~~~~~~~~~~~G~---~v~~v~~~~--~~~ld~e~l~~~i~~------~tklv~i~~~~npTG~~~~l~~I~~la~~~g~ 167 (2602)
+.+++..+ |+ .++.||++. ++.+|+++|+++|.+ .+-+|+.+..++.||.+.|+++|+++|++||+
T Consensus 194 v~Kaa~~l---Glg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDpl~eI~~i~~~~~i 270 (490)
T PLN02880 194 LQKACQIA---GIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDPLLELGKIAKSNGM 270 (490)
T ss_pred HHHHHHHc---CCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCcHHHHHHHHHHcCC
Confidence 99999988 65 478888874 578999999999963 25689999999999999999999999999999
Q ss_pred EEEEecccccccccc-----cCCC-CCccEEEecccc-ccCCCCcEEEEEecCCCCcccceecCCCc----------ccc
Q psy15216 168 IFHCDAAQAVGKIDI-----NIQN-YKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGH----------EYG 230 (2602)
Q Consensus 168 ~livD~a~a~g~~~~-----dl~~-~~~D~~~~S~~K-~~Gp~G~G~l~~~~~~~~~l~~~~~g~~~----------~~~ 230 (2602)
|+|||+||+.+.... .+.. .++|+++.++|| ++.|.|+|++++++.. ....++..++.+ ...
T Consensus 271 wlHVDaA~gg~~~~~~~~~~~l~gie~aDSit~d~HKwl~~P~~~g~llvr~~~-~l~~~~~~~~~Yl~~~~~~~~~~~~ 349 (490)
T PLN02880 271 WFHVDAAYAGSACICPEYRHYIDGVEEADSFNMNAHKWFLTNFDCSLLWVKDRN-ALIQSLSTNPEFLKNKASQANSVVD 349 (490)
T ss_pred EEEEehhhHHHHHhCHHHHHHhcCchhcCEEEECchhhcCCCccEEEEEEeCHH-HHHHHHccCHHHhcCccccccCCCC
Confidence 999999998875432 2333 258999999999 5679999999998521 111111111100 000
Q ss_pred ccccCcch---hHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEccc--Ch-
Q psy15216 231 LRSGTLAT---HQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI--EG- 303 (2602)
Q Consensus 231 ~~~gt~~~---~~~~al~~al~-~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~--~~- 303 (2602)
+...++.. .....+..+|+ +..+++.+.+++..++++++.+.+.+ .++++++.++. ..+++|.++.. +.
T Consensus 350 ~~~~~i~~~rr~~alklw~~l~~~G~~g~~~~i~~~~~lA~~~~~~l~~-~~~~el~~~~~---~~iv~Fr~~~~~~~~~ 425 (490)
T PLN02880 350 YKDWQIPLGRRFRSLKLWMVLRLYGVENLQSYIRNHIKLAKEFEQLVAQ-DSRFEVVTPRI---FSLVCFRLVPPKNNED 425 (490)
T ss_pred hhccCcCCCCcccHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhc-CCCEEEecCCc---eEEEEEEEeCCCCChh
Confidence 00011100 11234444555 34456777778888999999999977 78999987654 24566666532 11
Q ss_pred ------hHHHHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCC-HHHHHHHHHHHHhh
Q psy15216 304 ------ESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTT-EKEIDFTIKLLKMK 369 (2602)
Q Consensus 304 ------~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t-~edid~li~~L~~~ 369 (2602)
..+.++| ..+.+...... ...++|++++.++| .+|++++++.|++.
T Consensus 426 ~~~~~n~~l~~~l~~~g~~~v~~t~~~--------------------g~~~lR~~~~n~~tt~~di~~~~~~i~~~ 481 (490)
T PLN02880 426 NGNKLNHDLLDAVNSSGKIFISHTVLS--------------------GKYVLRFAVGAPLTEERHVTAAWKVLQDE 481 (490)
T ss_pred hHHHHHHHHHHHHHhCCCEEEEEEEEC--------------------CEEEEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 2344444 24444322110 12689999876555 69999999999864
|
|
| >PRK08114 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.5e-17 Score=210.16 Aligned_cols=310 Identities=15% Similarity=0.109 Sum_probs=206.1
Q ss_pred cchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHH-HHHhCCc
Q psy15216 33 HIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIR-KLENDGF 111 (2602)
Q Consensus 33 ~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~-~~~~~G~ 111 (2602)
+.|++...+..+.+++.+|++-|.. ..++++|++.|++.++.++. ++||+|+++...|.+....+. .+++.|+
T Consensus 54 ~~YsR~~nPt~~~le~~la~LEg~~--~a~~~~SGmaAi~~~~~~ll----~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi 127 (395)
T PRK08114 54 LFYGRRGTLTHFSLQEAMCELEGGA--GCALYPCGAAAVANAILAFV----EQGDHVLMTGTAYEPTQDFCSKILSKLGV 127 (395)
T ss_pred ccccCCCChhHHHHHHHHHHHhCCC--eEEEEhHHHHHHHHHHHHHc----CCCCEEEEeCCCcHHHHHHHHHHHHhcCc
Confidence 5566666677889999999999864 67778889999999999887 899999999999988877774 3577899
Q ss_pred EEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHhc--CCEEEEecccccccccccCCCCCc
Q psy15216 112 RVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSK--GVIFHCDAAQAVGKIDINIQNYKV 189 (2602)
Q Consensus 112 ~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~~--g~~livD~a~a~g~~~~dl~~~~~ 189 (2602)
++.+++. .|.+.++++++++||+|++.+++||+|.+.|+++|+++||++ |++++||++++.|.. ++..++|+
T Consensus 128 ~v~~vd~-----~d~~~l~~~l~~~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~lvVDnT~a~p~~-~~pl~~Ga 201 (395)
T PRK08114 128 TTTWFDP-----LIGADIAKLIQPNTKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMIDNTWAAGVL-FKALDFGI 201 (395)
T ss_pred EEEEECC-----CCHHHHHHhcCCCceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCEEEEECCCccccc-cCHHHcCC
Confidence 9999874 378999999999999999999999999999999999999998 499999999999887 88888999
Q ss_pred cEEEecccc-ccCCC--CcEEEEEecCCCCcccceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy15216 190 DLMSFSAHK-IYGPK--GIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQ 266 (2602)
Q Consensus 190 D~~~~S~~K-~~Gp~--G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~ 266 (2602)
|+++.|.|| ++|+. +.|+++.+++..+.+.... .......+....+.+..+|+- +.-+.++..+++
T Consensus 202 Divv~S~tKyl~Ghsdv~~G~v~~~~~~~~~l~~~~-------~~~G~~~~p~~a~l~~rgl~T----L~lR~~~~~~na 270 (395)
T PRK08114 202 DISIQAGTKYLVGHSDAMIGTAVANARCWEQLRENS-------YLMGQMVDADTAYMTSRGLRT----LGVRLRQHEESS 270 (395)
T ss_pred cEEEEcCcccccCCCcceeEEEEcCHHHHHHHHHHH-------HhccCCCCHHHHHHHHcCCCc----HHHHHHHHHHHH
Confidence 999999999 45554 4787777765433333211 111223343333333344432 344555666667
Q ss_pred HHHHHHHhhccCceE-EeCC--CCC-----------CCCceEEEEEccc-C---hhHHHHHh--CCeEEcccccCCCCCC
Q psy15216 267 KRLYNGLMESIEEIY-INGD--MNN-----------RIPHNLNISFNFI-E---GESLLMAI--KDIAVSSGSACTSASL 326 (2602)
Q Consensus 267 ~~l~~~L~~~~~g~~-l~~~--~~~-----------~~~~~~~~~~~~~-~---~~~~~~~L--~gI~v~~g~~~~~~~~ 326 (2602)
..+.+.|++ .|.+. ++-| +++ ....++.|.+.+. + ...+++.| ..+.++-|..-+--..
T Consensus 271 ~~va~~L~~-hp~V~~V~yPgl~~~p~~~~~~~~~~g~gg~~sf~l~~~~~~~~~~~f~~~l~l~~~a~SlGg~~SLi~~ 349 (395)
T PRK08114 271 LKVAEWLAE-HPEVARVNHPALPGCKGHEFWKRDFTGSSGLFSFVLKKKLTDEQLANYLDNFSLFSMAYSWGGFESLILA 349 (395)
T ss_pred HHHHHHHHc-CCCEeEEECCCCCCCccHHHHHhhCCCCceEEEEEecCcccHHHHHHHHHhCCcceeecccCCccceecc
Confidence 777777766 45543 2211 111 1122333444321 1 23556665 3455555543321100
Q ss_pred -ChHHHHHHcCCC--ccCCCCeEEEecCCCCCHHHHHHHHHHHH
Q psy15216 327 -EPSYVLRALGCN--DELAHSSIRFTIGRFTTEKEIDFTIKLLK 367 (2602)
Q Consensus 327 -~~~~~~~~~g~~--~~~~~~~iRis~~~~~t~edid~li~~L~ 367 (2602)
.| ......... .....+.||+|+|..+.++=++.+-++|.
T Consensus 350 ~~~-~~~~~~~~~~~~~~~~~liRlSvGlEd~~DLi~Dl~~Al~ 392 (395)
T PRK08114 350 NQP-EEIAAIRPAGEVDFTGTLIRLHIGLEDVDDLIADLAAGFA 392 (395)
T ss_pred CCc-hhhhccCChhHhcCCCCeEEEEeccCCHHHHHHHHHHHHH
Confidence 11 111111110 01234889999997655554555555554
|
|
| >TIGR03419 NifU_clost FeS cluster assembly scaffold protein NifU, Clostridium type | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.3e-19 Score=186.33 Aligned_cols=91 Identities=60% Similarity=1.029 Sum_probs=84.9
Q ss_pred hhHhhhhcccCCCCCCCCCCCCCcceeeeeCCCCcccEEEEEEEEcCCCceEeeeeeccccchhHhhHHHHHHHHcCCCh
Q psy15216 375 YSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKTYGCGSAIASSSLVTEWVKGKTL 454 (2602)
Q Consensus 375 y~~~~~~hy~~p~n~g~~~~~~~~~~~~~~~~~~cgd~~~~~~~~~~~~~i~~~~~~~~gc~~~~a~~s~~~~~~~g~~~ 454 (2602)
|++++++||+||+|.|.+++++ ++++.+||.|||.|+|+|+|+ +++|+|++|+++||++++||+|+++++++|||+
T Consensus 1 Y~~~il~~~~np~~~g~l~~~~---~~~~~~np~CGD~i~l~l~i~-~~~I~d~~f~~~GC~is~Asas~~~e~i~Gk~l 76 (121)
T TIGR03419 1 YSEKVMDHFMNPRNVGEIENAD---GVGEVGNPKCGDIMKIFLKVE-DDIIKDVKFKTFGCGAAIASSSMATEMIKGKTL 76 (121)
T ss_pred ChHHHHHHHhCCCCCCCCCCCC---eEEEeCCCCCccEEEEEEEEc-CCEEEEEEEEEeccHHHHHHHHHHHHHHcCCCH
Confidence 8999999999999999999887 688999999999999999995 679999999999999999999999999999999
Q ss_pred hhhhhccccchhhhh
Q psy15216 455 DEAMSIKNTDIAEEL 469 (2602)
Q Consensus 455 ~e~~~i~~~~i~~~l 469 (2602)
+|+..++.+.+...+
T Consensus 77 ~ea~~i~~~~i~~~l 91 (121)
T TIGR03419 77 EEAWELTNKAVAEAL 91 (121)
T ss_pred HHHHHhhhHHHHHHH
Confidence 999999987665544
|
NifU and NifS form a pair of iron-sulfur (FeS) cluster biosynthesis proteins much simpler than the ISC and SUF systems. Members of this protein family are a distinct group of NifU-like proteins, found always to a NifS-like protein and restricted to species that lack a SUF system. Typically, NIF systems service a smaller number of FeS-containing proteins than do ISC or SUF. Members of this particular branch typically are found, almost half the time, near the mnmA gene, involved in the carboxymethylaminomethyl modification of U34 in some tRNAs (see GenProp0704). While other NifU proteins are associated with nitrogen fixation, this family is not. |
| >PRK06959 putative threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.4e-17 Score=211.52 Aligned_cols=263 Identities=15% Similarity=0.068 Sum_probs=186.8
Q ss_pred HHHHHHHHHHhCCC-CCcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCC
Q psy15216 1440 EKARNEVAQLIYAD-PREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNG 1518 (2602)
Q Consensus 1440 ~~lr~~ia~~~g~~-~~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~ 1518 (2602)
.++|+++++++|.+ +++|++|+|+++++..+.. +. ++|+ |+++.|+|+.+...++.+ |++++.++.+.
T Consensus 56 ~~L~~~ia~~~~~~~~~~I~i~~Gs~e~i~~l~~-~~----~~g~-v~v~~P~y~~y~~~~~~~---g~~~~~v~~~~-- 124 (339)
T PRK06959 56 DGLAACAARYYGAPDAAHVLPVAGSQAAIRALPA-LL----PRGR-VGIAPLAYSEYAPAFARH---GHRVVPLDEAA-- 124 (339)
T ss_pred HHHHHHHHHHhCCCCcccEEECcCHHHHHHHHHH-hc----CCCe-EEEcCCCcHHHHHHHHHC---CCEEEeecccc--
Confidence 67899999999996 5899999999999986644 33 6776 888999999988777665 99998887643
Q ss_pred CcChhHHHhhccCCceEEEEeccccccccccChHHHHHH---hhhcCCEEEEecccccCcccccC---CCCCccEEEEcc
Q psy15216 1519 LITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGEL---CRSKGVIFHCDAAQAVGKIDINI---QNYKVDLMSFSA 1592 (2602)
Q Consensus 1519 ~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~~i---a~~~gi~vivD~a~~~g~~~~~l---~~~~~D~~v~S~ 1592 (2602)
+ .+.+.++++++++||||||.+++.+++.++ |++++.++|+|+++.......++ .....-+++.||
T Consensus 125 ----~----~~~~~~~~v~l~nPnNPTG~~~s~~~l~~l~~~~~~~~~~vI~DEay~~~~~~~s~~~~~~~~~vi~l~Sf 196 (339)
T PRK06959 125 ----D----TLPAALTHLIVVNPNNPTAERLPAARLLRWHAQLAARGGTLIVDEAFADTLPAASLAAHTDRPGLVVLRSV 196 (339)
T ss_pred ----h----hccccCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEECCCccCCCcccchhccCCCCEEEEecC
Confidence 2 233456799999999999999996666555 56789999999998643211111 112223778899
Q ss_pred ccccCCCc--eEEEEEecCCCCccccccccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15216 1593 HKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLM 1670 (2602)
Q Consensus 1593 ~K~~gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~ 1670 (2602)
+|.+|++| +||+++++++++.+..... ..+.+...+.++.++|.. ....+..++++.+.++++.+.|.
T Consensus 197 SK~~gl~GlRiGy~v~~~~li~~l~~~~~---------~~~vs~~~q~a~~~~L~~-~~~~~~~~~~~~~~r~~l~~~L~ 266 (339)
T PRK06959 197 GKFFGLAGVRAGFVLAAPALLAALRDALG---------AWTVSGPARHAVRAAFAD-AAWQAAMRERLAADGARLAALLR 266 (339)
T ss_pred hhhcCCcchheEEEecCHHHHHHHHHhcC---------CCCCcHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888 8999999887776654321 123444555556566652 23456777888889999999998
Q ss_pred hcCCcEEEeCCCCCCCCceEEEEEecCCcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCC
Q psy15216 1671 ESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGR 1748 (2602)
Q Consensus 1671 ~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~ 1748 (2602)
+ . ++.+.. ...++++...+..++...| +||.++. |... +++|||++
T Consensus 267 ~-~-g~~~~~-------~~~f~~~~~~~~~~l~~~l~~~GI~vr~---~~~~-------------------~~lRisi~- 314 (339)
T PRK06959 267 A-H-GFAVHA-------TPLFSWTDDPRAAALHAALARRGIWTRY---FAPP-------------------PSVRFGLP- 314 (339)
T ss_pred H-C-CCCccC-------cceEEEEeCCCHHHHHHHHHhCCeEEEE---CCCC-------------------CeEEEECC-
Confidence 7 2 544321 1122333333455666666 8999972 3221 68999984
Q ss_pred CCCHHHHHHHHHHHHH
Q psy15216 1749 FTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1749 ~~t~edid~li~~L~~ 1764 (2602)
.+++++++++++|++
T Consensus 315 -~~~~e~~~l~~al~~ 329 (339)
T PRK06959 315 -ADEAEWQRLEDALAE 329 (339)
T ss_pred -CCHHHHHHHHHHHHH
Confidence 277899999999986
|
|
| >PLN02880 tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.78 E-value=6e-17 Score=212.41 Aligned_cols=307 Identities=16% Similarity=0.171 Sum_probs=213.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHhCCCCC-------cEEEeCCHHHHHHHHHHhhhhhhcc-------CCCEEEEcCCCCcc
Q psy15216 1429 HIYGWTAEKAIEKARNEVAQLIYADPR-------EIIWTSGATESNNLAIKGAAHFYKK-------RGKHIITVQTEHKS 1494 (2602)
Q Consensus 1429 ~~~~~~~~~~~~~lr~~ia~~~g~~~~-------~iv~t~gaT~al~~al~~l~~~~~~-------~gd~Vlv~~~~~~s 1494 (2602)
+..++...++..++.+++++++|.+.+ ..++|+|+|+|+..++.+......+ +.-.|++++..|.|
T Consensus 114 ~~~sp~~~~lE~~vi~wl~~l~g~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~~~~~~g~~~~~~~vv~~S~~aH~S 193 (490)
T PLN02880 114 WITSPAATELEMIVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGKNALEKLVVYASDQTHSA 193 (490)
T ss_pred cccCcccHHHHHHHHHHHHHHhCCCchhhcCCCCceEEcCccHHHHHHHHHHHHHHHHHHhcccccCCeEEEEcCCchHH
Confidence 344566778889999999999998643 3788999999999998887643221 22367789999999
Q ss_pred hHHHHHHHHhCCc---EEEEeccCC--CCCcChhHHHhhccCC------ceEEEEeccccccccccChHHHHHHhhhcCC
Q psy15216 1495 VLDSIRKLENDGF---RVTYLKPKN--NGLITLSQLEEKICSD------TILVSVMLVNNEIGVIQPILEIGELCRSKGV 1563 (2602)
Q Consensus 1495 ~~~~~~~~~~~G~---~v~~v~~~~--~~~id~d~l~~~i~~~------t~lv~l~~~~n~tG~~~~l~~I~~ia~~~gi 1563 (2602)
+..+...+ |+ .++.||++. ++.+|+++|+++|.+. +-+|+.+..++.||.+.|+++|+++|++||+
T Consensus 194 v~Kaa~~l---Glg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDpl~eI~~i~~~~~i 270 (490)
T PLN02880 194 LQKACQIA---GIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDPLLELGKIAKSNGM 270 (490)
T ss_pred HHHHHHHc---CCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCcHHHHHHHHHHcCC
Confidence 99998888 65 478888875 5789999999999642 5689999999999999999999999999999
Q ss_pred EEEEecccccCcccc-----cCCC-CCccEEEEcccc-ccCCCceEEEEEecCCCCccccccccCC-------cc---cc
Q psy15216 1564 IFHCDAAQAVGKIDI-----NIQN-YKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGG-------HE---YG 1626 (2602)
Q Consensus 1564 ~vivD~a~~~g~~~~-----~l~~-~~~D~~v~S~~K-~~gp~G~G~l~~~~~~~~~l~~~~~g~~-------~~---~~ 1626 (2602)
|+|||+|++.+.... .+.. ..+|+++.++|| ++.|.|+|++++++.. ....++..++. .. ..
T Consensus 271 wlHVDaA~gg~~~~~~~~~~~l~gie~aDSit~d~HKwl~~P~~~g~llvr~~~-~l~~~~~~~~~Yl~~~~~~~~~~~~ 349 (490)
T PLN02880 271 WFHVDAAYAGSACICPEYRHYIDGVEEADSFNMNAHKWFLTNFDCSLLWVKDRN-ALIQSLSTNPEFLKNKASQANSVVD 349 (490)
T ss_pred EEEEehhhHHHHHhCHHHHHHhcCchhcCEEEECchhhcCCCccEEEEEEeCHH-HHHHHHccCHHHhcCccccccCCCC
Confidence 999999998875433 2333 258999999999 6779999999998531 11111111000 00 00
Q ss_pred CCC----CCcchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecC--Cc
Q psy15216 1627 LRS----GTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI--EG 1699 (2602)
Q Consensus 1627 ~~~----gt~~~~~~~al~~aL~-~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~--~~ 1699 (2602)
+.. .+..+. ...+...|+ +..+++.++..+..++++++.+.+.+ .+++++..++. ..+++|.++.. +.
T Consensus 350 ~~~~~i~~~rr~~-alklw~~l~~~G~~g~~~~i~~~~~lA~~~~~~l~~-~~~~el~~~~~---~~iv~Fr~~~~~~~~ 424 (490)
T PLN02880 350 YKDWQIPLGRRFR-SLKLWMVLRLYGVENLQSYIRNHIKLAKEFEQLVAQ-DSRFEVVTPRI---FSLVCFRLVPPKNNE 424 (490)
T ss_pred hhccCcCCCCccc-HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhc-CCCEEEecCCc---eEEEEEEEeCCCCCh
Confidence 000 111111 122334444 34566778888888999999999987 78999987643 34556666532 11
Q ss_pred -------HHHHHhc---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCC-HHHHHHHHHHHHH
Q psy15216 1700 -------ESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTT-EKEIDFTIKLLKM 1764 (2602)
Q Consensus 1700 -------~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t-~edid~li~~L~~ 1764 (2602)
..+...| ..+.+...... ...++|++++.++| .+|++++++.|.+
T Consensus 425 ~~~~~~n~~l~~~l~~~g~~~v~~t~~~--------------------g~~~lR~~~~n~~tt~~di~~~~~~i~~ 480 (490)
T PLN02880 425 DNGNKLNHDLLDAVNSSGKIFISHTVLS--------------------GKYVLRFAVGAPLTEERHVTAAWKVLQD 480 (490)
T ss_pred hhHHHHHHHHHHHHHhCCCEEEEEEEEC--------------------CEEEEEEEecCCCCCHHHHHHHHHHHHH
Confidence 2334444 23444322111 12689999877655 6999999999987
|
|
| >PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.5e-17 Score=213.94 Aligned_cols=312 Identities=17% Similarity=0.190 Sum_probs=213.0
Q ss_pred HHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhccc-----ccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEe
Q psy15216 42 AIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAH-----FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYL 116 (2602)
Q Consensus 42 ~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~-----~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v 116 (2602)
...++++.+|+++|.+ ++++++|+|+|+.+++.++.. ..++|||+|++++++|+++..++... |++++++
T Consensus 64 ~~~~fe~~lA~~~g~~--~~v~~~sGt~al~~aL~al~~~~~~~~~~~pGd~VIv~~~t~~a~~~~v~~~---G~~pv~v 138 (438)
T PRK15407 64 FNDAFEKKLAEFLGVR--YALLVNSGSSANLLAFSALTSPKLGDRALKPGDEVITVAAGFPTTVNPIIQN---GLVPVFV 138 (438)
T ss_pred hHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHHHHhhccccccCCCCCCEEEECCCCcHHHHHHHHHc---CCEEEEE
Confidence 4678999999999975 789999999999999987621 02479999999999999998888765 9999999
Q ss_pred ccCC-CCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHhcCCEEEEeccccccccccc--CCCCCccEEE
Q psy15216 117 KPKN-NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDIN--IQNYKVDLMS 193 (2602)
Q Consensus 117 ~~~~-~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~~g~~livD~a~a~g~~~~d--l~~~~~D~~~ 193 (2602)
++++ ++.+|+++++++++++|++|+++|+ +|...++++|.++|++||+++|+|++|+.|...-+ ...++ |+.+
T Consensus 139 dvd~~~~~id~~~le~~i~~~tkaVi~~~~---~G~p~dl~~I~~la~~~gi~vIeDaa~a~G~~~~g~~~G~~g-d~~~ 214 (438)
T PRK15407 139 DVELPTYNIDASLLEAAVSPKTKAIMIAHT---LGNPFDLAAVKAFCDKHNLWLIEDNCDALGSTYDGRMTGTFG-DIAT 214 (438)
T ss_pred ecCCCcCCcCHHHHHHHcCcCCeEEEEeCC---CCChhhHHHHHHHHHHCCCEEEEECccchhhhcCCeeeeccC-ceEE
Confidence 9874 6789999999999999999999985 88889999999999999999999999999986432 22233 8888
Q ss_pred ecccc---ccCCCCcEEEEEecCCCC-cccceecCCCcc---------------------------ccc---cccCcchh
Q psy15216 194 FSAHK---IYGPKGIGALYIRRNPRT-RIEAQIHGGGHE---------------------------YGL---RSGTLATH 239 (2602)
Q Consensus 194 ~S~~K---~~Gp~G~G~l~~~~~~~~-~l~~~~~g~~~~---------------------------~~~---~~gt~~~~ 239 (2602)
+|||. +.+..| |+++.+++... .++... .++.. ..+ ..|. |+
T Consensus 215 fSf~~~k~~~~geG-G~l~t~d~~l~~~~~~~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~-n~- 290 (438)
T PRK15407 215 LSFYPAHHITMGEG-GAVFTNDPLLKKIIESFR-DWGRDCWCAPGCDNTCGKRFGWQLGELPFGYDHKYTYSHLGY-NL- 290 (438)
T ss_pred EeCCCCCCccccCc-eEEEECCHHHHHHHHHHH-HhCccccccccccccccccccccccccccccccccccccccc-cc-
Confidence 88874 444445 88888765332 222211 11110 000 0110 00
Q ss_pred HHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHhhccCc-eEEeCCCCCCCCc--eEEEEEcc---cChhHHHHHh--
Q psy15216 240 QIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIEE-IYINGDMNNRIPH--NLNISFNF---IEGESLLMAI-- 310 (2602)
Q Consensus 240 ~~~al~~al~~~-~~~~~~~~~~~~~l~~~l~~~L~~~~~g-~~l~~~~~~~~~~--~~~~~~~~---~~~~~~~~~L-- 310 (2602)
.+--+.+|+-.. ...++++.++.+++++++.+.|.+ +++ +.+...+....+. .+.+.++. .+.+++.+.|
T Consensus 291 rmsel~AAig~~qL~~l~~~~~~R~~~a~~y~~~L~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~Rd~l~~~L~~ 369 (438)
T PRK15407 291 KITDMQAAIGLAQLEKLPGFIEARKANFAYLKEGLAS-LEDFLILPEATPNSDPSWFGFPITVKEDAGFTRVELVKYLEE 369 (438)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCccccCcCCCCCeeEEEEEEEEECCcCCCCHHHHHHHHHH
Confidence 111233344322 245788999999999999999976 564 3332222221122 22333332 3467888888
Q ss_pred CCeEEcccccCC-CCCCChHHHHH------HcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 311 KDIAVSSGSACT-SASLEPSYVLR------ALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 311 ~gI~v~~g~~~~-~~~~~~~~~~~------~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
+||..+. .+. +-+.+|.+... .++..+......|-+.++...+++|+++++++|++.
T Consensus 370 ~GI~~~~--~~~~~~~~~p~~~~~~~~~~~~~P~ae~~~~~~l~LP~~~~l~~~~v~~i~~~i~~~ 433 (438)
T PRK15407 370 NKIGTRL--LFAGNLTRQPYFKGVKYRVVGELTNTDRIMNDTFWIGVYPGLTEEMLDYVIEKIEEF 433 (438)
T ss_pred CCCCccc--cCCCccccChhhhhcCCCCCCCChHHHHHHhCeEEecCCCCCCHHHHHHHHHHHHHH
Confidence 6887653 232 33344433211 122233335578999999989999999999999964
|
|
| >PRK08861 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.5e-17 Score=211.81 Aligned_cols=299 Identities=12% Similarity=0.094 Sum_probs=195.5
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHH-HHhCCcEEEEeccC
Q psy15216 1437 KAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDGFRVTYLKPK 1515 (2602)
Q Consensus 1437 ~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~-~~~~G~~v~~v~~~ 1515 (2602)
.....++++++++.|. +++++++|+++|+..+++++. ++||+|+++.+.|++....+.. ....|+++.+++.
T Consensus 53 pt~~~Le~~lA~leg~--e~ivvt~gg~~Ai~~~l~all----~~Gd~Il~~~~~y~~~~~~~~~~~~~~gi~v~~vd~- 125 (388)
T PRK08861 53 PNRGLLEQTLSELESG--KGAVVTNCGTSALNLWVSALL----GPDDLIVAPHDCYGGTYRLFNTRANKGDFKVQFVDQ- 125 (388)
T ss_pred chHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHHHHc----CCCCEEEEcCCchHHHHHHHHHHHhcCCeEEEEECC-
Confidence 4568899999999995 689999999999999999987 8999999999999976665543 3445788888853
Q ss_pred CCCCcChhHHHhhccCCceEEEEeccccccccccChHHHHHHhhhcCCEEEEecccccCcccccCCCCCccEEEEccccc
Q psy15216 1516 NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKI 1595 (2602)
Q Consensus 1516 ~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K~ 1595 (2602)
.|+++++++++++|++|++++|+||||.+.|+++|.++|+++|+++++|++++.+....++ +.++|+++.|+||+
T Consensus 126 ----~d~e~l~~~i~~~tklV~lesP~NPtG~v~dl~~I~~la~~~gi~vIvDea~~~~~~~~pl-~~GaDivv~S~tK~ 200 (388)
T PRK08861 126 ----SDAAALDAALAKKPKLILLETPSNPLVRVVDIAELCQKAKAVGALVAVDNTFLTPVLQKPL-ELGADFVIHSTTKY 200 (388)
T ss_pred ----CCHHHHHHhcCcCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCccccccCCCc-ccCCCEEEeeccee
Confidence 4899999999999999999999999999999999999999999999999999877644443 46899999999994
Q ss_pred -cCCCc--eEEEEEec-CCCCccccccccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15216 1596 -YGPKG--IGALYIRR-NPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLME 1671 (2602)
Q Consensus 1596 -~gp~G--~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~ 1671 (2602)
.|+.+ .|+++.++ ++.++++... .....+.++...+.+..+|+- +.-++++..+.+..+.+.|.+
T Consensus 201 l~G~~d~~gG~i~~~~~~~~~~~~~~~-------~~~G~~~~p~~a~l~~rgl~T----l~lR~~~~~~~a~~~a~~L~~ 269 (388)
T PRK08861 201 INGHSDVIGGVLITKTKEHAEELAWWG-------NCIGATGTPFDSYMTLRGIRT----LGARMRVHEESAQQILAYLQT 269 (388)
T ss_pred ccCCCcceeEEEEecHHHHHHHHHHHH-------hccCCCCChHHHHHHHhcCCC----HHHHHHHHHHHHHHHHHHHHh
Confidence 55654 57776654 3333332111 111223333333323233332 344556666667777777766
Q ss_pred cCCcEE-EeCC--CCC-----------CCCceEEEEEecC--CcHHHHHhcC--CEEEccccccCC---CC-----CChh
Q psy15216 1672 SIEEIY-INGD--MNN-----------RIPHNLNISFNFI--EGESLLMAIK--DIAVSSGSACTS---AS-----LEPS 1725 (2602)
Q Consensus 1672 ~~~gl~-i~~~--~~~-----------~~~~~~~~~~~~~--~~~~~~~~L~--gI~v~~g~~~~~---~~-----~~~~ 1725 (2602)
.|.+. +.-| +++ ....+..|.+.+. ....|+..|+ .+.++-|....- +. ..+.
T Consensus 270 -~p~v~~V~yP~l~~~p~~~~~~~~~~g~gg~~sf~~~~~~~~~~~f~~~l~l~~~~~s~G~~~sl~~~p~~~~h~~~~~ 348 (388)
T PRK08861 270 -QSLVGTIYHPSLPEHPGHEIAKKQQSGFGSMLSFEFAGSFEQLKVFVKALALFSLAESLGGVESLICHPASMTHRAMGE 348 (388)
T ss_pred -CCCeeEEECCCCCCCchHHHHHHhCCCCCceEEEEeCCCHHHHHHHHhcCCcceEccCCCCCcceeeCCCcccccccCH
Confidence 56553 2211 111 1223344444320 1234555552 333333322110 10 0111
Q ss_pred HHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHH
Q psy15216 1726 YVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK 1763 (2602)
Q Consensus 1726 ~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~ 1763 (2602)
-.....|+++ +.||||+|..+.++-++.+-++|+
T Consensus 349 ~~~~~~gi~~----~liRlsvGlE~~~dli~Dl~~al~ 382 (388)
T PRK08861 349 EALAEAGVSQ----QLLRLSVGLEDAQDLIADLDQAFA 382 (388)
T ss_pred HHHHhcCCCC----CeEEEEeCcCCHHHHHHHHHHHHH
Confidence 1223466654 789999998665544445445544
|
|
| >PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.78 E-value=4e-17 Score=211.36 Aligned_cols=313 Identities=15% Similarity=0.135 Sum_probs=204.3
Q ss_pred chhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHHH-HHhCCcE
Q psy15216 34 IYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDGFR 112 (2602)
Q Consensus 34 ~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~-~~~~G~~ 112 (2602)
.+++...+..+.+++.+|++.|.+ ..++++|++.|+..++.++. ++||+|+++.+.|+.....+.. +++.|++
T Consensus 57 ~y~r~~~p~~~~Le~~lA~leg~~--~al~~~sG~~Ai~~al~~ll----~~GD~Vlv~~~~y~~t~~~~~~~~~~~Gv~ 130 (431)
T PRK08248 57 IYTRIMNPTTDVFEKRIAALEGGI--GALAVSSGQAAITYSILNIA----SAGDEIVSSSSLYGGTYNLFAHTLPKLGIT 130 (431)
T ss_pred eeECCCCchHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHHh----CCCCEEEEccCchhhHHHHHHHHHHhCCEE
Confidence 344444556788999999999964 67889999999999998886 7999999999999887666643 4678999
Q ss_pred EEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHhcCCEEEEecccccccccccCCCCCccEE
Q psy15216 113 VTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLM 192 (2602)
Q Consensus 113 v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~~g~~livD~a~a~g~~~~dl~~~~~D~~ 192 (2602)
+++++. .|+++++++++++|++|++++|+||||.+.|+++|+++||++|+++|+|++++.+....++ ++++|++
T Consensus 131 v~~vd~-----~d~e~l~~ai~~~tklV~l~sp~NPtG~v~di~~I~~la~~~gi~vIvD~t~a~~~~~~pl-~~gaDiv 204 (431)
T PRK08248 131 VKFVDP-----SDPENFEAAITDKTKALFAETIGNPKGDVLDIEAVAAIAHEHGIPLIVDNTFASPYLLRPI-EHGADIV 204 (431)
T ss_pred EEEECC-----CCHHHHHHhcCCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEeCCCCccccCChh-HcCCCEE
Confidence 999985 3899999999999999999999999999999999999999999999999999866544443 5789999
Q ss_pred EeccccccCCCC--cEEEEEecC-CC-C---c---ccceecCC------C---------c----cccccccCcchhHHHH
Q psy15216 193 SFSAHKIYGPKG--IGALYIRRN-PR-T---R---IEAQIHGG------G---------H----EYGLRSGTLATHQIVG 243 (2602)
Q Consensus 193 ~~S~~K~~Gp~G--~G~l~~~~~-~~-~---~---l~~~~~g~------~---------~----~~~~~~gt~~~~~~~a 243 (2602)
+.|+||++|++| +|.+++... .. . . +......+ . . .........+....+.
T Consensus 205 v~S~tK~lgg~g~~~Gg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~p~~a~l 284 (431)
T PRK08248 205 VHSATKFIGGHGTSIGGVIVDSGKFDWKGSGKFPGLTEPDPSYHGLVYTDAVGEAAYITKARVQLLRDLGAALSPFNSFL 284 (431)
T ss_pred EEcCccccCCCCCceEEEEEeCCccccccccccccccCCccccccchhhhhhchhhHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 999999988887 676666432 11 0 0 10000000 0 0 0000011222222222
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceE-EeCC--CCC------------CCCceEEEEEccc--ChhHH
Q psy15216 244 MGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIY-INGD--MNN------------RIPHNLNISFNFI--EGESL 306 (2602)
Q Consensus 244 l~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~-l~~~--~~~------------~~~~~~~~~~~~~--~~~~~ 306 (2602)
+...|+ -+..+.+++.+++..+.+.|++ .|.+. ++-| +++ .....+.|.+.+. ....+
T Consensus 285 ~~rgl~----tl~~R~~~~~~nA~~la~~L~~-~p~v~~V~yPgl~s~p~~~~~~~~~~~g~gg~~sf~l~~~~~~~~~f 359 (431)
T PRK08248 285 LLQGLE----TLHLRMERHSENALAVAKFLEE-HEAVEWVSYPGLPSHPSYELAKKYLPKGQGAILTFGIKGGVEAGKKL 359 (431)
T ss_pred HhcCcC----cHHHHHHHHHHHHHHHHHHHHh-CCCcceEECCCCCCCccHHHHHHhCcCCCceEEEEEecCCHHHHHHH
Confidence 222222 2456777788888888888877 67654 2211 111 0122333444321 23456
Q ss_pred HHHh--CCeEEcccccCCC---C-C----CChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHH
Q psy15216 307 LMAI--KDIAVSSGSACTS---A-S----LEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK 367 (2602)
Q Consensus 307 ~~~L--~gI~v~~g~~~~~---~-~----~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~ 367 (2602)
++.| ..+.++-|...+- + . ..+.-.....|++ ++.||+|+|...-++-++.+.++|+
T Consensus 360 ~~~l~l~~~~~slG~~~sl~~~p~~~~h~~~~~~~~~~~gi~----~~liRlsvGlEd~~dL~~Dl~~Al~ 426 (431)
T PRK08248 360 IDSVKLFSHLANVGDSKSLIIHPASTTHQQLSEEEQLAAGVT----PGLVRLSVGTEAIDDILDDLRQAIR 426 (431)
T ss_pred HHhCCcceeccccCCCCeeeeCCCcCccccCCHHHHHhcCCC----CCeEEEEeccCCHHHHHHHHHHHHH
Confidence 6666 3444444432221 1 0 0111123356766 3889999998665555556666665
|
|
| >PRK05939 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.4e-17 Score=210.29 Aligned_cols=167 Identities=15% Similarity=0.200 Sum_probs=140.8
Q ss_pred cchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHHHHHhCCcE
Q psy15216 33 HIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFR 112 (2602)
Q Consensus 33 ~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~ 112 (2602)
+.+++...+..+++++.++++.|.. ..+.+++++.|+..++.++. ++||+|+++++.|+++...+..+.+.|++
T Consensus 39 ~~Y~r~g~p~~~~lE~~la~leg~~--~~v~~ssG~~Ai~~~l~all----~~Gd~Vv~~~~~y~~t~~~~~~l~~~G~~ 112 (397)
T PRK05939 39 FTYARQGTPTTAALEAKITKMEGGV--GTVCFATGMAAIAAVFLTLL----RAGDHLVSSQFLFGNTNSLFGTLRGLGVE 112 (397)
T ss_pred CCcCCCCCHHHHHHHHHHHHHhCCC--eEEEeCCHHHHHHHHHHHHc----CCCCEEEECCCccccHHHHHHHHHhcCCE
Confidence 4445544567889999999999976 34555566899999998887 89999999999999987777767778999
Q ss_pred EEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHhcCCEEEEecccccccccccCCCCCccEE
Q psy15216 113 VTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLM 192 (2602)
Q Consensus 113 v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~~g~~livD~a~a~g~~~~dl~~~~~D~~ 192 (2602)
+++++.. |+++++++++++|++|++++|+||||.+.|+++|+++||++|+++++|++++.+. .++...+++|++
T Consensus 113 v~~v~~~-----d~e~l~~~l~~~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~t~a~~~-~~~~~~~gaDiv 186 (397)
T PRK05939 113 VTMVDAT-----DVQNVAAAIRPNTRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNTMTSPW-LFRPKDVGASLV 186 (397)
T ss_pred EEEECCC-----CHHHHHHhCCCCCeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEEECCccccc-ccCccccCCEEE
Confidence 9999853 7999999999999999999999999999999999999999999999999998774 345556789999
Q ss_pred EeccccccCCCC--cEEEEEe
Q psy15216 193 SFSAHKIYGPKG--IGALYIR 211 (2602)
Q Consensus 193 ~~S~~K~~Gp~G--~G~l~~~ 211 (2602)
+.|+||+++.+| +|++++.
T Consensus 187 v~S~sK~~~g~g~~igg~v~~ 207 (397)
T PRK05939 187 INSLSKYIAGHGNALGGAVTD 207 (397)
T ss_pred EecCeecccCCCCeEEEEEec
Confidence 999999887766 5665554
|
|
| >PLN02590 probable tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.5e-17 Score=209.73 Aligned_cols=308 Identities=14% Similarity=0.164 Sum_probs=217.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhCCCC-------CcEEEeCCHHHHHHHHHHhhhhhhcc-------CCCEEEEcCCCCc
Q psy15216 1428 NHIYGWTAEKAIEKARNEVAQLIYADP-------REIIWTSGATESNNLAIKGAAHFYKK-------RGKHIITVQTEHK 1493 (2602)
Q Consensus 1428 ~~~~~~~~~~~~~~lr~~ia~~~g~~~-------~~iv~t~gaT~al~~al~~l~~~~~~-------~gd~Vlv~~~~~~ 1493 (2602)
.+..++...++..++.+++++++|.+. ..-+||+|+|+|+..++.+......+ +.-.|++++..|.
T Consensus 161 ~~~~sPa~t~lE~~vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~~~~~~g~~~~~~~vvy~S~~aH~ 240 (539)
T PLN02590 161 TWLTSPAATELEIIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKKVGKTLLPQLVVYGSDQTHS 240 (539)
T ss_pred CcccCchhHHHHHHHHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHHHHHHHHHHHhhhcccCCCCEEEEecCCchH
Confidence 455677778899999999999999864 24788999999999988887643221 2336778888999
Q ss_pred chHHHHHHHHhCCc---EEEEeccCC--CCCcChhHHHhhccCC------ceEEEEeccccccccccChHHHHHHhhhcC
Q psy15216 1494 SVLDSIRKLENDGF---RVTYLKPKN--NGLITLSQLEEKICSD------TILVSVMLVNNEIGVIQPILEIGELCRSKG 1562 (2602)
Q Consensus 1494 s~~~~~~~~~~~G~---~v~~v~~~~--~~~id~d~l~~~i~~~------t~lv~l~~~~n~tG~~~~l~~I~~ia~~~g 1562 (2602)
|+..++..+ |+ .++.|+++. ++.+|+++|+++|..+ +-+|+.+..++.||.+.|+++|+++|++||
T Consensus 241 Sv~KAa~il---Glg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDpl~~Ia~i~~~~g 317 (539)
T PLN02590 241 SFRKACLIG---GIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDPLVPLGNIAKKYG 317 (539)
T ss_pred HHHHHHHHc---CCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCCHHHHHHHHHHhC
Confidence 998888887 55 688898874 5789999999999643 568999999999999999999999999999
Q ss_pred CEEEEecccccCccccc-----CCC-CCccEEEEcccc-ccCCCceEEEEEecCC--CCc--cccccccCC---------
Q psy15216 1563 VIFHCDAAQAVGKIDIN-----IQN-YKVDLMSFSAHK-IYGPKGIGALYIRRNP--RTR--IEAQIHGGG--------- 1622 (2602)
Q Consensus 1563 i~vivD~a~~~g~~~~~-----l~~-~~~D~~v~S~~K-~~gp~G~G~l~~~~~~--~~~--l~~~~~g~~--------- 1622 (2602)
+|+|||+|++......+ +.. ..+|.+++++|| ++.|.++|++++++.. ... ..+.|....
T Consensus 318 ~WlHVDaA~GG~al~~~~~r~~~~Gie~ADSit~D~HK~l~~p~~cg~llvr~~~~l~~a~~~~~~YL~~~~~~~~~~~d 397 (539)
T PLN02590 318 IWLHVDAAYAGNACICPEYRKFIDGIENADSFNMNAHKWLFANQTCSPLWVKDRYSLIDALKTNPEYLEFKVSKKDTVVN 397 (539)
T ss_pred CeEEEecchhhhhhcChhhHHHhcCCccCCEEEECchhhcCcCcCEEEEEecCHHHHHHHhhcCHHHhCCcccccccCCC
Confidence 99999999876553321 111 137999999999 5679999999999741 111 111111100
Q ss_pred c-cccCCCCCcchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecC--C
Q psy15216 1623 H-EYGLRSGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI--E 1698 (2602)
Q Consensus 1623 ~-~~~~~~gt~~~~~~~al~~aL~-~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~--~ 1698 (2602)
. .+... .+..+ ....++.+|+ +..+++.+++.+..++++++.+.+.+ .++++++.++. ..+++|.+... +
T Consensus 398 ~~d~~i~-lsRr~-raLklW~~lr~~G~~G~~~~i~~~~~lA~~~~~~l~~-~~~fel~~~~~---l~iVcFr~~~~~~~ 471 (539)
T PLN02590 398 YKDWQIS-LSRRF-RSLKLWMVLRLYGSENLRNFIRDHVNLAKHFEDYVAQ-DPSFEVVTTRY---FSLVCFRLAPVDGD 471 (539)
T ss_pred ccccCCC-CCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeEEecCCc---eEEEEEEecCCCCC
Confidence 0 01111 12232 3344556666 56788999999999999999999987 78999986533 24455555321 1
Q ss_pred ---cH----HHHHhc--CC-EEEccccccCCCCCChhHHHHHcCCCccccCCeEEEec-CCCCCHHHHHHHHHHHHH
Q psy15216 1699 ---GE----SLLMAI--KD-IAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTI-GRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1699 ---~~----~~~~~L--~g-I~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~-~~~~t~edid~li~~L~~ 1764 (2602)
.+ .+.+.+ .| +.+.+... ....++|+++ .+.++++||+.+++.|.+
T Consensus 472 ~~~~~~ln~~l~~~l~~~G~~~vs~t~~--------------------~g~~~lR~~i~n~~T~~~dv~~~~~~i~~ 528 (539)
T PLN02590 472 EDQCNERNRELLAAVNSTGKIFISHTAL--------------------SGKFVLRFAVGAPLTEEKHVTEAWQIIQK 528 (539)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEeeEE--------------------CCEEEEEEEecCCCCCHHHHHHHHHHHHH
Confidence 12 233333 22 22221111 0125799996 467889999999999987
|
|
| >PF01592 NifU_N: NifU-like N terminal domain; InterPro: IPR002871 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.4e-19 Score=188.83 Aligned_cols=95 Identities=51% Similarity=0.924 Sum_probs=87.2
Q ss_pred hhhHhhhhcccCCCCCCCCCCCCCcceeeeeCCCCcccEEEEEEEEcCC-CceEeeeeeccccchhHhhHHHHHHHHcCC
Q psy15216 374 SYSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKN-GVITDAKFKTYGCGSAIASSSLVTEWVKGK 452 (2602)
Q Consensus 374 ~y~~~~~~hy~~p~n~g~~~~~~~~~~~~~~~~~~cgd~~~~~~~~~~~-~~i~~~~~~~~gc~~~~a~~s~~~~~~~g~ 452 (2602)
+|++++++||.||+|.|.+++++. ++++.++|+|||.|+|+|+|+++ |+|+|++|+++||++++||+|+++++++||
T Consensus 1 ~Y~~~i~~~~~nP~~~g~l~~~~~--~~~~~~n~~CGD~i~i~l~i~~~~~~I~d~~f~~~GC~~~~Asas~~~~~i~gk 78 (126)
T PF01592_consen 1 MYSDKILDHYRNPRNYGKLEDADA--GTGEAGNPSCGDEIRIYLKIDDDGGRIKDAKFQGFGCAISIASASMMCELIKGK 78 (126)
T ss_dssp HHHHHHHHHHHSTSSBSSSTTTSS--EEEEEEETTTTEEEEEEEEESSSTSBEEEEEEEEESSHHHHHHHHHHHHHHTTS
T ss_pred CchHHHHHHHhCCCCCCCCCCCCc--ceeeecCCCCCCEEEEEEEEecCCCeEEEEEEEeecChHHHHHHHHHHHHHcCC
Confidence 699999999999999999998874 47888999999999999999865 899999999999999999999999999999
Q ss_pred Chhhhhhccccchhhhhc
Q psy15216 453 TLDEAMSIKNTDIAEELV 470 (2602)
Q Consensus 453 ~~~e~~~i~~~~i~~~l~ 470 (2602)
|++||..|+..++.+.+-
T Consensus 79 ~l~ea~~i~~~~i~~~l~ 96 (126)
T PF01592_consen 79 TLEEALKITAEDIEEALG 96 (126)
T ss_dssp BHHHHHCHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 999999999877766544
|
These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents the N-terminal of NifU and homologous proteins. NifU contains two domains: an N-terminal and a C-terminal domain (IPR001075 from INTERPRO) []. These domains exist either together or on different polypeptides, both domains being found in organisms that do not fix nitrogen (e.g. yeast), so they have a broader significance in the cell than nitrogen fixation. ; GO: 0005506 iron ion binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly; PDB: 3LVL_A 4EB5_C 4EB7_C 1WFZ_A 2Z7E_C 2AZH_A 1XJS_A 1Q48_A 1R9P_A 2KQK_A .... |
| >PRK10534 L-threonine aldolase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-17 Score=213.85 Aligned_cols=300 Identities=14% Similarity=0.145 Sum_probs=196.6
Q ss_pred CCCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccC
Q psy15216 6 TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKR 85 (2602)
Q Consensus 6 ~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~ 85 (2602)
++.++|.+.+++.+.......| .+.+...++++.+++++|.++ +++++|+++++.+++.++. .+
T Consensus 9 ~~~p~~~~~~a~~~~~~~~~~Y----------~~~~~~~~L~~~la~~~g~~~--~~v~~~g~~a~~~~l~~~~----~~ 72 (333)
T PRK10534 9 VTRPSRAMLEAMMAAPVGDDVY----------GDDPTVNALQDYAAELSGKEA--ALFLPTGTQANLVALLSHC----ER 72 (333)
T ss_pred CCCCCHHHHHHHHhccCCCccc----------CCCHHHHHHHHHHHHHhCCCe--EEEeCchHHHHHHHHHHhc----CC
Confidence 3457888888887654332212 122357889999999999863 3677778888888887776 79
Q ss_pred CCEEEEcCCCCcccHHH--HHHHHhCCcEEEEeccCCCCccChHHHHhhccC------CceEEEEecccCcccccccHHH
Q psy15216 86 GKHIITVQTEHKSVLDS--IRKLENDGFRVTYLKPKNNGLITLSQLEEKICS------DTILVSVMLVNNEIGVIQPILE 157 (2602)
Q Consensus 86 gd~Vlv~~~~~~s~~~~--~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~------~tklv~i~~~~npTG~~~~l~~ 157 (2602)
||+|+++.+.|...... .... .+++++.++.+.++.+|+++|++++++ ++++|++++|+ ||.++|.++
T Consensus 73 gd~vi~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~lv~l~np~--~G~v~~~~~ 148 (333)
T PRK10534 73 GEEYIVGQAAHNYLYEAGGAAVL--GSIQPQPIDAAADGTLPLDKVAAKIKPDDIHFARTRLLSLENTH--NGKVLPREY 148 (333)
T ss_pred CCeeEEechhhhhHhcCCchHHh--cCceEEeecCCCCCCCCHHHHHHhhcccCcCcccceEEEEecCC--CCeecCHHH
Confidence 99999988877643221 1222 247888888777889999999999976 68999999765 699999766
Q ss_pred H---HHHHHhcCCEEEEecccccccc---cccCC--CCCccEEEeccccccCCCCcE-EEEEecCCCCcccceecCCCcc
Q psy15216 158 I---GELCRSKGVIFHCDAAQAVGKI---DINIQ--NYKVDLMSFSAHKIYGPKGIG-ALYIRRNPRTRIEAQIHGGGHE 228 (2602)
Q Consensus 158 I---~~la~~~g~~livD~a~a~g~~---~~dl~--~~~~D~~~~S~~K~~Gp~G~G-~l~~~~~~~~~l~~~~~g~~~~ 228 (2602)
| .++|++|++++++|++|.++.. ..... ....|.++.|+||.||++ +| |++.++++++.+......+
T Consensus 149 l~~i~~~~~~~~~~lvvDEA~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~~~~~-~G~~~~~~~~~i~~~~~~~~~~--- 224 (333)
T PRK10534 149 LKQAWEFTRERNLALHVDGARIFNAVVAYGCELKEITQYCDSFTICLSKGLGTP-VGSLLVGNRDYIKRARRWRKMT--- 224 (333)
T ss_pred HHHHHHHHHHcCCeEEeeHHHHHHHHHHcCCCHHHHHhcCCEEEEEeEcCCCCc-ccceEEcCHHHHHHHHHHHHHh---
Confidence 5 5678899999999999765321 11110 112355667899988876 56 6778888777775433110
Q ss_pred ccccccCcch--hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcccChhHH
Q psy15216 229 YGLRSGTLAT--HQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESL 306 (2602)
Q Consensus 229 ~~~~~gt~~~--~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 306 (2602)
.+..+. ....+..++|+ . ..+..++..+.++++.+.|.+ .|+.++.+. .+++.+.++..+..++
T Consensus 225 ----~~~~~~~~~~~a~~~~~l~---~-~~~~~~~~~~~r~~l~~~L~~--~g~~~~~~~----~nfv~~~~~~~~~~~~ 290 (333)
T PRK10534 225 ----GGGMRQAGILAAAGLYALK---H-NVARLQEDHDNAAWLAEQLRE--AGADVMRQD----TNMLFVRVGEEQAAAL 290 (333)
T ss_pred ----CCchhhHHHHHHHHHHHHH---h-hHHHHHHHHHHHHHHHHHHHh--CCCccCCCC----ceEEEEECCchhHHHH
Confidence 111121 11222222332 1 123333455567889999987 377665432 2334444432234556
Q ss_pred HHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 307 LMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 307 ~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
.+.| +||.++++ ..+|++.+.-.|.+++++++++|++
T Consensus 291 ~~~l~~~gi~v~~~-------------------------~~~rl~~~~r~t~e~~~~~~~~l~~ 329 (333)
T PRK10534 291 GEYMRERNVLINAS-------------------------PIVRLVTHLDVSREQLAEVVAHWRA 329 (333)
T ss_pred HHHHHHcCeeecCC-------------------------ceEEEEEEeCCCHHHHHHHHHHHHH
Confidence 5555 79998744 1378887656799999999999984
|
|
| >PLN02271 serine hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.4e-17 Score=203.97 Aligned_cols=338 Identities=15% Similarity=0.195 Sum_probs=232.9
Q ss_pred CCCCCCCHHHHHHHHHHHhhhc--CCCCCCCcchhhhHH-HHHHHHHHHHHHHhCCCC----CcEEEeCCHHHHHHHHHH
Q psy15216 4 SATTPIDPRVVDKMIPYLRVQF--GNPASRNHIYGWTAE-KAIEKARNEVAQLIYADP----REIIWTSGATESNNLAIK 76 (2602)
Q Consensus 4 a~~~~~p~~v~~a~~~~l~~~~--~~p~~~~~~~~~~~~-~~~~~~r~~lA~~~g~~~----~~Iv~t~g~T~al~~~~~ 76 (2602)
++-..+++.|++++...+.+.| ++|+...| .|...- ....-+.++..++||+++ .+|..- |++.|+..++.
T Consensus 155 ASEN~~S~av~~algS~ltnkYaEG~pG~Ryy-~G~~~iD~iE~la~era~~lF~~~~~~~gaNVQp~-SGs~AN~aV~~ 232 (586)
T PLN02271 155 ASENFVCRAVMEALGSHLTNKYSEGMPGARYY-TGNQYIDQIERLCCERALAAFGLDSEKWGVNVQPY-SCTSANFAVYT 232 (586)
T ss_pred cccccCCHHHHHHhcCcccccCCCCCCCCcCC-CCChhHHHHHHHHHHHHHHHhCCcccccccceeec-cHHHHHHHHHH
Confidence 3445788899999888887654 45655333 333333 344446677888999876 455555 67789999999
Q ss_pred hcccccccCCCEEEEcCCCCcccHHHHH------HHHhCCcEEEEec--cC-CCCccChHHHHh-hccCCceEEEEeccc
Q psy15216 77 GAAHFYKKRGKHIITVQTEHKSVLDSIR------KLENDGFRVTYLK--PK-NNGLITLSQLEE-KICSDTILVSVMLVN 146 (2602)
Q Consensus 77 ~l~~~~~~~gd~Vlv~~~~~~s~~~~~~------~~~~~G~~v~~v~--~~-~~~~ld~e~l~~-~i~~~tklv~i~~~~ 146 (2602)
++. +|||.|+..+.+|++...... .+...|..+..++ ++ .++.+|++++++ +...+||+|++.+..
T Consensus 233 ALl----~PGD~IL~ldl~~GGHlshg~~~~~g~~vs~sG~~~~~vpY~~d~~~g~IDyd~lek~a~~~rPKLII~g~Sa 308 (586)
T PLN02271 233 GLL----LPGDRIMGLDSPSGGHMSHGYYTPGGKKVSGASIFFESLPYKVNPQTGYIDYDKLEEKALDFRPKILICGGSS 308 (586)
T ss_pred Hhc----CCCCEEEEecCCCCCchhcccccccccccccccceEEEEEcccccccCccCHHHHHHHhhhcCCeEEEECchh
Confidence 997 899999999999998765432 2233465555555 54 468899999998 668899999999988
Q ss_pred CcccccccHHHHHHHHHhcCCEEEEecccccccccccCC---CCCccEEEecccc-ccCCCCcEEEEEecCCCCccccee
Q psy15216 147 NEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQ---NYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQI 222 (2602)
Q Consensus 147 npTG~~~~l~~I~~la~~~g~~livD~a~a~g~~~~dl~---~~~~D~~~~S~~K-~~Gp~G~G~l~~~~~~~~~l~~~~ 222 (2602)
+| ..+|+++|.++|+++|+++++|++|..|.++.+.. ..++|++++|+|| +.||.| |+++++++.....++..
T Consensus 309 yp--r~~D~~~i~eIAdevGA~LmvD~AH~aGLIa~g~~~sP~~~aDvvt~TTHKtLrGPrG-G~I~~r~~~~~~~~g~~ 385 (586)
T PLN02271 309 YP--REWDYARFRQIADKCGAVLMCDMAHISGLVAAKECVNPFDYCDIVTSTTHKSLRGPRG-GIIFYRKGPKLRKQGML 385 (586)
T ss_pred cc--CcCCHHHHHHHHHHcCCEEEEECcccccccccCcCCCCCcCCcEEEeCCcccCCCCCc-eEEEecccccccccCCc
Confidence 88 78899999999999999999999999998755432 1258999999999 669999 88887776444333333
Q ss_pred cCCCcc---------------ccccccCcchhHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCC
Q psy15216 223 HGGGHE---------------YGLRSGTLATHQIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDM 286 (2602)
Q Consensus 223 ~g~~~~---------------~~~~~gt~~~~~~~al~~al~~~-~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~ 286 (2602)
.+|+.. .++..| |..+.++++..+++.. ...+.+..++..++++.|.+.|.+ .|+.++...
T Consensus 386 gs~s~~~~~~d~~~kI~~aVfPglqgG-phn~~IAalAvalkea~~~efk~Ya~QVv~NAkaLA~~L~~--~G~~vv~gg 462 (586)
T PLN02271 386 LSHGDDNSHYDFEEKINFAVFPSLQGG-PHNNHIAALAIALKQVATPEYKAYMQQVKKNAQALASALLR--RKCRLVTGG 462 (586)
T ss_pred cccccccccHHHHHHhhcccCCccccC-hhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH--CCCeEeeCC
Confidence 222211 123334 4444588888888844 344578888999999999999987 689888644
Q ss_pred CCCCCceEEEEEcc--cChhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCC----CCCHHH
Q psy15216 287 NNRIPHNLNISFNF--IEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGR----FTTEKE 358 (2602)
Q Consensus 287 ~~~~~~~~~~~~~~--~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~----~~t~ed 358 (2602)
.. .+.+.+.+.. .++......| .+|.+....- |. . ......+.|||.... -..++|
T Consensus 463 Td--nHlvLvDl~~~g~~G~~ae~~Le~~~I~~Nkn~i--P~-----------d-~~~~~psGiRiGT~alT~rG~~e~d 526 (586)
T PLN02271 463 TD--NHLLLWDLTTLGLTGKNYEKVCEMCHITLNKTAI--FG-----------D-NGTISPGGVRIGTPAMTSRGCLESD 526 (586)
T ss_pred CC--cceeeecCcccCCCHHHHHHHHHHcCeEeccccC--CC-----------C-CCCCCCCcccccCHHHHhcCCCcHH
Confidence 33 3444444432 3455544445 5777643221 11 0 011224679997532 335688
Q ss_pred HHHHHHHHHhh
Q psy15216 359 IDFTIKLLKMK 369 (2602)
Q Consensus 359 id~li~~L~~~ 369 (2602)
++.+.+.|.+.
T Consensus 527 ~~~iA~~i~~~ 537 (586)
T PLN02271 527 FETIADFLLRA 537 (586)
T ss_pred HHHHHHHHHHH
Confidence 99988888864
|
|
| >PRK13393 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=4e-17 Score=213.71 Aligned_cols=318 Identities=18% Similarity=0.130 Sum_probs=216.0
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCC
Q psy15216 1404 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK 1483 (2602)
Q Consensus 1404 ~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd 1483 (2602)
...+++++++.+.++....+++. +...........++++++++++|. +..++.+++++|+..++.++.. ..+|+
T Consensus 59 ~~~p~v~~a~~~~~~~~~~~~~~--s~~~~~~~~~~~~le~~la~~~g~--~~~~~~~SG~~An~~ai~~l~~--~~~g~ 132 (406)
T PRK13393 59 GQHPAVLAAMHEALDTCGAGAGG--TRNISGTNHYHVLLEAELADLHGK--EAALLFTSGYVSNWAALSTLGS--RLPGC 132 (406)
T ss_pred CCCHHHHHHHHHHHHHcCCCCcc--cccccCChHHHHHHHHHHHHHhCC--CcEEEeCCcHHHHHHHHHHhhc--CCCCC
Confidence 45788999999999864322221 111111223578899999999995 3566666667898888887651 13788
Q ss_pred EEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhcc----CCceEEEEeccccccccccChHHHHHHhh
Q psy15216 1484 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKIC----SDTILVSVMLVNNEIGVIQPILEIGELCR 1559 (2602)
Q Consensus 1484 ~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~----~~t~lv~l~~~~n~tG~~~~l~~I~~ia~ 1559 (2602)
.|+.....|+++...+... |.+++.++. .|++++++.+. +++++|++++++|++|.+.|+++|.++|+
T Consensus 133 ~I~~~~~~H~s~~~~~~~~---g~~~~~~~~-----~d~~~l~~~l~~~~~~~~~~v~~~~v~~~~G~~~~l~~i~~l~~ 204 (406)
T PRK13393 133 VILSDELNHASMIEGIRHS---RAEKRIFRH-----NDPADLERKLSDLDPHRPKLVAFESVYSMDGDIAPIAEICDVAE 204 (406)
T ss_pred EEEEccchhHHHHHHHHHc---CCeEEEeCC-----CCHHHHHHHHHhccCCCCEEEEEcCCCCCCCchhCHHHHHHHHH
Confidence 8888889999988777554 777777653 36777777664 36789999999999999999999999999
Q ss_pred hcCCEEEEecccccCcc-ccc-----CCC--CCccEEEEccccccCCCceEEEEEecCCCCccccccccCCccccC-CCC
Q psy15216 1560 SKGVIFHCDAAQAVGKI-DIN-----IQN--YKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGL-RSG 1630 (2602)
Q Consensus 1560 ~~gi~vivD~a~~~g~~-~~~-----l~~--~~~D~~v~S~~K~~gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~-~~g 1630 (2602)
+||+++++|++|+.|.. +.. ... ..+|+++.|++|.+|..| ||++.++++++.+.... ..+ ..+
T Consensus 205 ~~~~~livDea~~~g~~g~~G~g~~~~~~~~~~~~i~~~tlsKa~g~~G-G~~~~~~~~~~~l~~~~------~~~~~t~ 277 (406)
T PRK13393 205 KHGAMTYLDEVHAVGLYGPRGGGIAEREGLADRLTIIEGTLAKAFGVMG-GYITGSAALCDFIRSFA------SGFIFTT 277 (406)
T ss_pred HcCCEEEEECCccccccCCCCCchhhhcCCCCCCeEEEEeCchhhcccC-ceeeCCHHHHHHHHHhC------cCceecC
Confidence 99999999999986552 111 011 125788889999888777 88887776555543321 112 134
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEec-CCcHHHHHhc---
Q psy15216 1631 TLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGESLLMAI--- 1706 (2602)
Q Consensus 1631 t~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~L--- 1706 (2602)
+.++...+++.++|+...... ..+.+..++.+++++.|.+ .++.+..+. ..+..+.+.. ....++...|
T Consensus 278 ~~~p~~~aa~~aaL~~~~~~~-~~~~~~~~~~~~l~~~L~~--~g~~~~~~~----~~i~~v~~~~~~~~~~l~~~L~~~ 350 (406)
T PRK13393 278 SLPPAVAAGALASVRHLKASS-AERERHQDRVARLRARLDK--AGIPHLPNP----SHIVPVMVGDPVLCKQISDELLDR 350 (406)
T ss_pred ccCHHHHHHHHHHHHHHhhCH-HHHHHHHHHHHHHHHHHHH--cCCCcCCCC----CCeEEEEeCCHHHHHHHHHHHHHh
Confidence 556666677778888654432 2345667888899999976 254433211 1222232221 1234555555
Q ss_pred CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1707 KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1707 ~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
+||.+++......+ ...+.||++++.++|.+|+++++++|++.
T Consensus 351 ~Gi~v~~~~~p~~p----------------~g~~~iRis~~~~~t~edid~l~~~l~~~ 393 (406)
T PRK13393 351 YGIYVQPINYPTVP----------------RGTERLRITPSPLHTDADIEHLVQALSEI 393 (406)
T ss_pred CCEEEEeECCCCCC----------------CCCceEEEEECCCCCHHHHHHHHHHHHHH
Confidence 48999875432211 11267999999999999999999999973
|
|
| >TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.1e-17 Score=209.21 Aligned_cols=298 Identities=14% Similarity=0.074 Sum_probs=196.9
Q ss_pred HHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHH-HHhCCcEEEEeccCC
Q psy15216 1438 AIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDGFRVTYLKPKN 1516 (2602)
Q Consensus 1438 ~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~-~~~~G~~v~~v~~~~ 1516 (2602)
....+++.++++.|.+ ++++++|+++|+..++.++. ++||+|+++++.|++....+.. +...|+++..++..
T Consensus 51 t~~~lE~~lA~l~g~~--~~~~~~sG~~Ai~~al~all----~~GD~Vl~~~~~y~~t~~~~~~~~~~~gi~v~~~d~~- 123 (377)
T TIGR01324 51 THFALQDAMCELEGGA--GCYLYPSGLAAVTNSILAFV----KAGDHVLMVDSAYEPTRYFCDIVLKRMGVDITYYDPL- 123 (377)
T ss_pred cHHHHHHHHHHHhCCC--cEEEECcHHHHHHHHHHHhc----CCCCEEEEcCCCcHHHHHHHHHHHHhcCcEEEEECCC-
Confidence 4678999999999964 78999999999999999987 8999999999999887655432 35568888887643
Q ss_pred CCCcChhHHHhhccCCceEEEEeccccccccccChHHHHHHhhhcCCEEEEecccccCcccccCCCCCccEEEEcccccc
Q psy15216 1517 NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIY 1596 (2602)
Q Consensus 1517 ~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K~~ 1596 (2602)
+.++++++++++|++|++++|+||+|.+.|+++|+++|++||+++++|++|+.|... ...++++|+++.|++|++
T Consensus 124 ----~~e~l~~~i~~~tklV~lesp~Np~g~~~dl~~I~~la~~~g~~livD~t~a~g~~~-~pl~~gaDivv~S~tK~l 198 (377)
T TIGR01324 124 ----IGEDIATLIQPNTKVLFLEAPSSITFEIQDIPAIAKAARNPGIVIMIDNTWAAGLLF-KPLEHGVDISIQAGTKYL 198 (377)
T ss_pred ----CHHHHHHhcCCCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcccccc-CccccCceEEEecCceec
Confidence 237899999999999999999999999999999999999999999999999998763 334679999999999955
Q ss_pred -CCCc--eEEEEEecCCCCccccccccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy15216 1597 -GPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESI 1673 (2602)
Q Consensus 1597 -gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~ 1673 (2602)
|+.+ .|+++.+++..+.+.... .....+.+....+.+..+++. +..++++..+.+..+.+.|.+ .
T Consensus 199 ~G~~d~~gG~v~~~~~~~~~l~~~~-------~~~G~~l~p~~a~~~~rgl~t----l~~R~~~~~~~a~~la~~L~~-~ 266 (377)
T TIGR01324 199 VGHSDIMIGTVVANARTWDQLREHS-------YLMGQMVDADDAYTTLRGLRT----LGVRLKQHQESSLAIAKWLSE-Q 266 (377)
T ss_pred cCCCCceEEEEEeCHHHHHHHHHHH-------HHhCCCCCHHHHHHHHhhhhh----HHHHHHHHHHHHHHHHHHHHh-C
Confidence 4544 588887766544443211 111223344333333344443 334456666666667777766 4
Q ss_pred CcE-EEeCCC--CC-----------CCCceEEEEEecCC---cHHHHHhc--CCEEEccccccCCC---C-CChhHHHHH
Q psy15216 1674 EEI-YINGDM--NN-----------RIPHNLNISFNFIE---GESLLMAI--KDIAVSSGSACTSA---S-LEPSYVLRA 1730 (2602)
Q Consensus 1674 ~gl-~i~~~~--~~-----------~~~~~~~~~~~~~~---~~~~~~~L--~gI~v~~g~~~~~~---~-~~~~~~~~~ 1730 (2602)
|.+ .++-|. ++ ....+..|.+.+.. ...+...| .++.++-|....-- + .........
T Consensus 267 p~v~~v~yp~l~~~p~~~~~~~~~~~~g~~~s~~l~~~~~~~~~~~~~~l~~~~~~~slG~~~sl~~~~~~~~~~~~~~~ 346 (377)
T TIGR01324 267 PEVARVLHPALPSCPGHEFWKRDFSGSSGLFSFVLQRLTQKQVHAFLDHLQLFGLGYSWGGYESLALCNQPELGHRPNIK 346 (377)
T ss_pred CCcCEEECCCCCCCccHHHHHHhccCCCceEEEEECCCCHHHHHHHHHhCCcceEeccCCCccceeecCCCCCCHHHHHh
Confidence 544 222211 11 12334445554212 34566666 35555545432210 0 011111223
Q ss_pred cCCCccccCCeEEEecCCCCCHHHHHHHHHHHH
Q psy15216 1731 LGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK 1763 (2602)
Q Consensus 1731 ~~~~~~~~~~~iRls~~~~~t~edid~li~~L~ 1763 (2602)
.++. .+.||||+|..+.++-++.+-++|+
T Consensus 347 ~~~~----~~liR~svGlE~~~dl~~dl~~al~ 375 (377)
T TIGR01324 347 RNLE----GPLIRVHIGLENVDDLKADLKAGFE 375 (377)
T ss_pred ccCC----CCEEEEEeCCCCHHHHHHHHHHHHh
Confidence 3333 2689999998655544455555544
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK08045 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=4e-17 Score=209.15 Aligned_cols=300 Identities=14% Similarity=0.081 Sum_probs=199.2
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHHH-HhCCcEEEEeccC
Q psy15216 1437 KAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDGFRVTYLKPK 1515 (2602)
Q Consensus 1437 ~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~-~~~G~~v~~v~~~ 1515 (2602)
.....++++++++.|. +++++++|+++|+..++.++. ++||+|+++++.|+++...+..+ ...|.++.+++
T Consensus 52 pt~~~L~~~lA~l~g~--~~~i~~~sg~~Ai~~~l~~l~----~~GD~Vl~~~~~y~~~~~~~~~~~~~~gi~v~~vd-- 123 (386)
T PRK08045 52 PTRDVVQRALAELEGG--AGAVLTNTGMSAIHLVTTVFL----KPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVD-- 123 (386)
T ss_pred ccHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHHHHc----CCCCEEEEcCCCcHHHHHHHHHHHhhCCeEEEEeC--
Confidence 3467899999999995 369999999999999999886 89999999999999866655544 33456777764
Q ss_pred CCCCcChhHHHhhccCCceEEEEeccccccccccChHHHHHHhhhcCCEEEEecccccCcccccCCCCCccEEEEccccc
Q psy15216 1516 NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKI 1595 (2602)
Q Consensus 1516 ~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K~ 1595 (2602)
..|+++++++++++|++|++++|+||||.+.|+++|.++|+++|+++++|++++.+....++ .+++|+++.|+||+
T Consensus 124 ---~~d~e~l~~~l~~~tklV~l~sP~NPtG~v~di~~I~~ia~~~g~~vivDeay~~~~~~~pl-~~gaDivv~S~tK~ 199 (386)
T PRK08045 124 ---QGDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREAGAVSVVDNTFLSPALQNPL-ALGADLVLHSCTKY 199 (386)
T ss_pred ---CCCHHHHHHhcccCCeEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCccccCCch-hhCCCEEEeeccee
Confidence 25899999999999999999999999999999999999999999999999999877654333 56889999999994
Q ss_pred -cCCCc--eEEEEEe-cCCCCccccccccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15216 1596 -YGPKG--IGALYIR-RNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLME 1671 (2602)
Q Consensus 1596 -~gp~G--~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~ 1671 (2602)
.|+.+ .|+++.+ +++.+++.... .....+.+....+.+..+|+. +..++++..+.+..+.+.|.+
T Consensus 200 l~G~~d~~~G~vi~~~~~~~~~l~~~~-------~~~g~~~~p~~~~l~~rgl~t----l~~R~~~~~~na~~la~~L~~ 268 (386)
T PRK08045 200 LNGHSDVVAGVVIAKDPDVVTELAWWA-------NNIGVTGGAFDSYLLLRGLRT----LVPRMELAQRNAQAIVKYLQT 268 (386)
T ss_pred ccCCCCceeEEEEeCcHHHHHHHHHHH-------HhcCCCCCHHHHHHHHhhhcc----HHHHHHHHHHHHHHHHHHHHc
Confidence 46665 5777664 33333332111 111223333333333344443 456667777777788888876
Q ss_pred cCCcEE-EeCC--CCC-----------CCCceEEEEEecC--CcHHHHHhcC--CEEEccccccCC---CC-----CChh
Q psy15216 1672 SIEEIY-INGD--MNN-----------RIPHNLNISFNFI--EGESLLMAIK--DIAVSSGSACTS---AS-----LEPS 1725 (2602)
Q Consensus 1672 ~~~gl~-i~~~--~~~-----------~~~~~~~~~~~~~--~~~~~~~~L~--gI~v~~g~~~~~---~~-----~~~~ 1725 (2602)
.|.+. +.-| +++ ....+..|.+.+. ....|...|+ .+..+-|....- +. ..+.
T Consensus 269 -~p~v~~V~yp~l~~~p~~~~~~~~~~g~g~~~s~~~~~~~~~~~~f~~~l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~ 347 (386)
T PRK08045 269 -QPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLRRFLGGLSLFTLAESLGGVESLISHAATMTHAGMAP 347 (386)
T ss_pred -CCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEecCcHHHHHHHHHhccceeEeccCCCCceeEeCCCCcccccCCH
Confidence 56653 2211 111 1222344444321 1235566663 333333332210 00 0111
Q ss_pred HHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1726 YVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1726 ~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
-.....|+++ +.||||+|..+.++-++.+.++|+.
T Consensus 348 ~~~~~~gi~~----~liR~svGlE~~~dl~~dl~~al~~ 382 (386)
T PRK08045 348 EARAAAGISE----TLLRISTGIEDGEDLIADLENGFRA 382 (386)
T ss_pred HHHHhcCCCC----CeEEEEeCcCCHHHHHHHHHHHHHH
Confidence 1223566653 8999999987666666666666654
|
|
| >PRK07582 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.6e-17 Score=212.33 Aligned_cols=297 Identities=13% Similarity=0.085 Sum_probs=194.2
Q ss_pred cchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHH-HHHhCCc
Q psy15216 33 HIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIR-KLENDGF 111 (2602)
Q Consensus 33 ~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~-~~~~~G~ 111 (2602)
+.+++...+...++++++|+++ . ++.++++|++.|+..++.++. ++||+|+++++.|+.+...+. .+.+.|+
T Consensus 43 ~~y~ry~~p~~~~Le~~lA~l~--~-~~~v~~~sG~~Ai~~~l~all----~~Gd~Vl~~~~~y~~~~~~~~~~l~~~G~ 115 (366)
T PRK07582 43 DTYGRASNPTWRALEAALGELE--G-AEALVFPSGMAAITAVLRALL----RPGDTVVVPADGYYQVRALAREYLAPLGV 115 (366)
T ss_pred ceeECCCCccHHHHHHHHHHHc--C-CCEEEECCHHHHHHHHHHHhc----CCCCEEEEeCCCcHhHHHHHHHHHhcCeE
Confidence 3344445567889999999999 2 355666777789999998876 899999999999988766554 3466799
Q ss_pred EEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHhcCCEEEEeccccc--ccccccCCCCCc
Q psy15216 112 RVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAV--GKIDINIQNYKV 189 (2602)
Q Consensus 112 ~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~~g~~livD~a~a~--g~~~~dl~~~~~ 189 (2602)
++++++.++.+. .+.+++++|++++|+||||.+.|+++|+++||++|+++++|++|+. +..+++ +++
T Consensus 116 ~v~~v~~~~~~~--------~~~~~t~lV~le~p~NPtg~v~di~~I~~~a~~~g~~lvVD~t~~~~~~~~p~~---~g~ 184 (366)
T PRK07582 116 TVREAPTAGMAE--------AALAGADLVLAETPSNPGLDVCDLAALAAAAHAAGALLVVDNTTATPLGQRPLE---LGA 184 (366)
T ss_pred EEEEECCCChHH--------HhccCceEEEEECCCCCCCCccCHHHHHHHHHHcCCEEEEECCCCCccccCchh---cCC
Confidence 999998653321 3347899999999999999999999999999999999999999863 444443 578
Q ss_pred cEEEecccccc-CCCC--cEEEEEe-cCCCCcccceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy15216 190 DLMSFSAHKIY-GPKG--IGALYIR-RNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFL 265 (2602)
Q Consensus 190 D~~~~S~~K~~-Gp~G--~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l 265 (2602)
|++++|+||++ |+.| +||++.+ +++.+.+..... ....+++....+.+..+++. ++.+.+++.++
T Consensus 185 Divv~S~sK~l~G~~g~~~G~v~~~~~~l~~~l~~~~~-------~~g~~~~~~~a~l~~r~l~t----l~~R~~~~~~n 253 (366)
T PRK07582 185 DLVVASDTKALTGHSDLLLGYVAGRDPELMAAVERWRL-------LAGAIPGPFEAWLAHRSLGT----LGLRFARQCAN 253 (366)
T ss_pred cEEEecccccccCCCCeeEEEEEcCcHHHHHHHHHHHH-------HhCCCCCHHHHHHHHhcccc----HHHHHHHHHHH
Confidence 99999999955 6777 5888875 444444442221 11223443333333334432 34555666777
Q ss_pred HHHHHHHHhhccCceEEeC-C--CCCC-----------CCceEEEEEcccChh---HHHHHhC--CeEEcccccCCCCCC
Q psy15216 266 QKRLYNGLMESIEEIYING-D--MNNR-----------IPHNLNISFNFIEGE---SLLMAIK--DIAVSSGSACTSASL 326 (2602)
Q Consensus 266 ~~~l~~~L~~~~~g~~l~~-~--~~~~-----------~~~~~~~~~~~~~~~---~~~~~L~--gI~v~~g~~~~~~~~ 326 (2602)
+..+.+.|.+ .|.+.-+. | +++. ...++.|.+. +.+ +++..++ .+.++-|...+..
T Consensus 254 a~~la~~L~~-~p~v~~v~yp~l~~~p~~~~~~~~~~~~gg~~s~~~~--~~~~~~~~~~~l~~~~~~~s~G~~~sl~-- 328 (366)
T PRK07582 254 ALAVAELLAG-HPAVRGVRYPGLPGDPAHEVAARQMRRFGGLVSFELA--DAAAAERFVAASRLVVAATSFGGVHTSA-- 328 (366)
T ss_pred HHHHHHHHHh-CCCccEEECCCCCCCccHHHHHhhCCCCcceEEEEeC--CHHHHHHHHHhCCcceecccCCCccchh--
Confidence 7778888876 56553221 1 1111 2333444443 333 3444442 2233333222111
Q ss_pred ChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 327 EPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 327 ~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
. .....+. ...++.||+|+|..+.++.++.+.++|+.
T Consensus 329 --~-~~~~~~~--~~~~~liR~svGlE~~~dli~dl~~al~~ 365 (366)
T PRK07582 329 --D-RRARWGD--AVPEGFVRLSCGIEDTDDLVADLERALDA 365 (366)
T ss_pred --h-hHHHcCC--CCCCCeEEEEeccCCHHHHHHHHHHHHhh
Confidence 0 0111221 12248899999999999999999998873
|
|
| >PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.77 E-value=3e-17 Score=211.79 Aligned_cols=300 Identities=14% Similarity=0.114 Sum_probs=196.6
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHHH-HhCCcEEEEeccC
Q psy15216 1437 KAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDGFRVTYLKPK 1515 (2602)
Q Consensus 1437 ~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~-~~~G~~v~~v~~~ 1515 (2602)
....++++++++++|+++. +++++++.|+..++.++. ++||+|+++.+.|+++...+... ...|++++.++
T Consensus 65 p~~~~Le~~lA~l~G~~~~--~~~~sG~~Ai~~~l~~~l----~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd-- 136 (398)
T PRK07504 65 PTVDMFEKRMCALEGAEDA--RATASGMAAVTAAILCQV----KAGDHVVAARALFGSCRYVVETLLPRYGIESTLVD-- 136 (398)
T ss_pred chHHHHHHHHHHHhCCCee--eEecCHHHHHHHHHHHHh----CCCCEEEEcCCchhHHHHHHHHHHhhcCeEEEEEC--
Confidence 3468899999999998643 457788999988877765 89999999999999877665443 45689998885
Q ss_pred CCCCcChhHHHhhccCCceEEEEeccccccccccChHHHHHHhhhcCCEEEEecccccCcccccCCCCCccEEEEccccc
Q psy15216 1516 NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKI 1595 (2602)
Q Consensus 1516 ~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K~ 1595 (2602)
.+|+++++++++++|++|++++|+||||.+.|+++|.++|+++|+++++|++|+.+..... .++++|++++|+||+
T Consensus 137 ---~~d~e~l~~ai~~~tklV~lesp~NptG~v~dl~~I~~la~~~gi~lvvD~a~a~~~~~~~-~~~gaDivv~S~sK~ 212 (398)
T PRK07504 137 ---GLDLDNWEKAVRPNTKVFFLESPTNPTLEVIDIAAVAKIANQAGAKLVVDNVFATPLFQKP-LELGAHIVVYSATKH 212 (398)
T ss_pred ---CCCHHHHHHhcCcCceEEEEECCCCCCcEecCHHHHHHHHHHcCCEEEEECCccccccCCc-hhhCCCEEEeecccc
Confidence 2689999999999999999999999999999999999999999999999999987654322 356899999999997
Q ss_pred cCCCc--e-EEEEEecCCCCc-cccccccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15216 1596 YGPKG--I-GALYIRRNPRTR-IEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLME 1671 (2602)
Q Consensus 1596 ~gp~G--~-G~l~~~~~~~~~-l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~ 1671 (2602)
++.+| + |+++.+++.+.+ ++.... ....+++....+.+..+|+. +..+.++..+++.++.+.|.+
T Consensus 213 l~g~g~~~GG~vv~~~~~i~~~~~~~~~-------~~g~~~s~~~A~~~l~~L~t----l~~R~~~~~~na~~la~~L~~ 281 (398)
T PRK07504 213 IDGQGRCLGGVVLSDKAWIEEHLQDYFR-------HTGPSLSPFNAWTLLKGLET----LPVRVRQQTESAAAIADFLAG 281 (398)
T ss_pred ccCCccceEEEEEeCcHHHHHHHHHHHH-------HhCCCCCHHHHHHHHhccch----HHHHHHHHHHHHHHHHHHHHc
Confidence 76555 4 566666554432 221110 00112222222222233332 455666667888888888876
Q ss_pred cCCcEE-EeCC--CCC-----------CCCceEEEEEecC--CcHHHHHhcC--CEEEccccccCC---C-----CCChh
Q psy15216 1672 SIEEIY-INGD--MNN-----------RIPHNLNISFNFI--EGESLLMAIK--DIAVSSGSACTS---A-----SLEPS 1725 (2602)
Q Consensus 1672 ~~~gl~-i~~~--~~~-----------~~~~~~~~~~~~~--~~~~~~~~L~--gI~v~~g~~~~~---~-----~~~~~ 1725 (2602)
.|++. +.-| +++ ....+..|.+.+. ....|+..|+ .+.++-|...+- + ...+.
T Consensus 282 -~p~v~~v~yp~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~~~~~~l~~~~~~~slG~~~sl~~~p~~~~~~~~~~ 360 (398)
T PRK07504 282 -HPKVARVIYPGRADHPQADIIAKQMTGGSTLVAFELKGGKEAAFRFLNALKIVRISNNLGDAKSLITHPATTTHKNLSP 360 (398)
T ss_pred -CCCccEEECCCCCCCccHHHHHHhCCCCccEEEEEeCCCHHHHHHHHHhCCcceecccCCCCCeeeeCCCCCCcccCCH
Confidence 66654 2221 111 0123444444321 1234556552 333333322210 0 01112
Q ss_pred HHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1726 YVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1726 ~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
-.....|+++ +.||||+|..+.++-++.+-++|+.
T Consensus 361 ~~~~~~gi~~----~liR~svGlE~~~dl~~dl~~al~~ 395 (398)
T PRK07504 361 EARAELGISE----GFLRLSAGLEDTDDLIEDLAAALKK 395 (398)
T ss_pred HHHHhcCCCC----CeEEEEeccCCHHHHHHHHHHHHHh
Confidence 2334566664 8899999987665555566566553
|
|
| >cd00615 Orn_deC_like Ornithine decarboxylase family | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.6e-18 Score=212.88 Aligned_cols=219 Identities=18% Similarity=0.199 Sum_probs=175.0
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCC
Q psy15216 1437 KAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN 1516 (2602)
Q Consensus 1437 ~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~ 1516 (2602)
..++++++.+++++|++ +.+++++|+|+|+..++.++. ++||+|+++.+.|+++...+... |+++++++++.
T Consensus 59 g~i~~~~~~~A~~~ga~-~~~~~~~Gst~a~~~~l~al~----~~gd~Vlv~~~~h~s~~~~~~~~---g~~~~~v~~~~ 130 (294)
T cd00615 59 GPIKEAQELAARAFGAK-HTFFLVNGTSSSNKAVILAVC----GPGDKILIDRNCHKSVINGLVLS---GAVPVYLKPER 130 (294)
T ss_pred hHHHHHHHHHHHHhCCC-CEEEEcCcHHHHHHHHHHHcC----CCCCEEEEeCCchHHHHHHHHHC---CCEEEEecCcc
Confidence 46889999999999975 345559999999999999987 89999999999999988877665 89999997753
Q ss_pred C------CCcChhHHHhhcc--CCceEEEEeccccccccccChHHHHHHhhhcCCEEEEeccccc-----CcccccCCCC
Q psy15216 1517 N------GLITLSQLEEKIC--SDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAV-----GKIDINIQNY 1583 (2602)
Q Consensus 1517 ~------~~id~d~l~~~i~--~~t~lv~l~~~~n~tG~~~~l~~I~~ia~~~gi~vivD~a~~~-----g~~~~~l~~~ 1583 (2602)
+ +.+|++++++++. ++++++++++| |++|.++|+++|+++|++||+++++|++|+. +..+.+...+
T Consensus 131 ~~~~~~~~~i~~~~l~~~l~~~~~~k~v~l~~p-~~~G~~~dl~~I~~~~~~~g~~livDeA~~~~~~~~~~~~~~~~~~ 209 (294)
T cd00615 131 NPYYGIAGGIPPETFKKALIEHPDAKAAVITNP-TYYGICYNLRKIVEEAHHRGLPVLVDEAHGAHFRFHPILPSSAAMA 209 (294)
T ss_pred CcccCcCCCCCHHHHHHHHHhCCCceEEEEECC-CCCCEecCHHHHHHHHHhcCCeEEEECcchhhhccCcccCcchhhc
Confidence 2 3689999999996 57899999998 7899999999999999999999999999875 2334444456
Q ss_pred CccEEEEcccc-ccCCCceEEEEEecCCCC--ccccccccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15216 1584 KVDLMSFSAHK-IYGPKGIGALYIRRNPRT--RIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILF 1660 (2602)
Q Consensus 1584 ~~D~~v~S~~K-~~gp~G~G~l~~~~~~~~--~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~ 1660 (2602)
++|+++.|+|| +.|+++.|+++++++... ++... ...+..+++++..+.++..++.++.....+..++..+
T Consensus 210 ~~div~~S~hK~l~g~~~~~~l~~~~~~~~~~~~~~~------~~~~~ttsps~~~~asl~~a~~~~~~~g~~~~~~~~~ 283 (294)
T cd00615 210 GADIVVQSTHKTLPALTQGSMIHVKGDLVNPDRVNEA------LNLHQSTSPSYLILASLDVARAMMALEGKELVEELIE 283 (294)
T ss_pred CCcEEEEchhcccchHhHHHHHHhCCCcCCHHHHHHH------HHHHCCCCcHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 89999999999 556777788888765322 11111 1235567899999999999998665444566777888
Q ss_pred HHHHHHHHHh
Q psy15216 1661 LQKRLYNGLM 1670 (2602)
Q Consensus 1661 l~~~l~~~L~ 1670 (2602)
+.+++++.+.
T Consensus 284 ~~~~~r~~l~ 293 (294)
T cd00615 284 LALYARQEIN 293 (294)
T ss_pred HHHHHHHHHh
Confidence 8888888764
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life. |
| >PRK12462 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.6e-17 Score=199.65 Aligned_cols=325 Identities=14% Similarity=0.073 Sum_probs=234.9
Q ss_pred CCCCHHHHHHHHHHHhhhcC--CCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCC-c-EEEeCCHHHHHHHHHHhccccc
Q psy15216 7 TPIDPRVVDKMIPYLRVQFG--NPASRNHIYGWTAEKAIEKARNEVAQLIYADPR-E-IIWTSGATESNNLAIKGAAHFY 82 (2602)
Q Consensus 7 ~~~p~~v~~a~~~~l~~~~~--~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~-~-Iv~t~g~T~al~~~~~~l~~~~ 82 (2602)
+..|+.|++++++.+.+... -.-.+.+..+....+.++++++.+.++++++.+ + +++.+|+|.++..+...+.
T Consensus 13 a~lp~~Vl~~~~~~~~~~~~~g~si~eisHRs~~F~~i~~~~~~~Lr~Ll~~P~~y~Vlfl~GggT~~~ea~~~Nll--- 89 (364)
T PRK12462 13 GALPDTVLEQVRQAVVELPETGLSVLGMSHRSSWFSSLLAQAEADLRDLLGIPDEYGVVFLQGGSSLQFSMIPMNFS--- 89 (364)
T ss_pred cCCCHHHHHHHHHHHhcccccCccccccccccHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeccHHHHHHHHHHHcC---
Confidence 37899999999988866322 011113344667788999999999999999533 4 5666779999999999998
Q ss_pred ccCCCEEE-EcCCCCcccHHHHHHHHhCCcEEEEeccC----CCCccChHHHHhhccCCceEEEEecccCcccccccHHH
Q psy15216 83 KKRGKHII-TVQTEHKSVLDSIRKLENDGFRVTYLKPK----NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILE 157 (2602)
Q Consensus 83 ~~~gd~Vl-v~~~~~~s~~~~~~~~~~~G~~v~~v~~~----~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~ 157 (2602)
.+||.++ +....+.+ .++.+.+++.| .+..+... +...++++++ .+.++.+.|.+||.++.||+.+|
T Consensus 90 -~~g~~~~~~~~tG~fg-~r~~~ea~~~g-~v~~~~~~~~~~~~~~p~~~~~--~~~~d~~~v~~t~NETstGv~~~--- 161 (364)
T PRK12462 90 -RPGAAAPEYVTTGYWS-RKAIGEASRVA-AMRVVWDGAASGYRTLPSLAEL--DWDARAPFRHYVSNETVEGLQFP--- 161 (364)
T ss_pred -CCCCcEEEEEeCCHHH-HHHHHHHHhcC-CceEecCcCCCCCCcCCCHHHh--ccCCCCcEEEEccCCCCceEecC---
Confidence 7898654 44444444 25667777776 55555421 2234566665 34567889999999999999997
Q ss_pred HHHHHHhcCCEEEEecccccccccccCCCCCccEEEeccccccCCCCcEEEEEecCCCCcccceec---CCCc--ccccc
Q psy15216 158 IGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIH---GGGH--EYGLR 232 (2602)
Q Consensus 158 I~~la~~~g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K~~Gp~G~G~l~~~~~~~~~l~~~~~---g~~~--~~~~~ 232 (2602)
++.+.+++++++|++.+++..|+|++++ |++.++.+|.+||+|+++++++++++++..+..+ .+.. .....
T Consensus 162 --~~~~~~~~llvvD~sS~~~s~pid~~~~--dvi~agsQKnlgP~Gltvvivs~~al~~~~~~~p~~ldy~~~~~~~s~ 237 (364)
T PRK12462 162 --DAAGLPDSPLIADMSSDFMSRPFDVEAY--GMVYAHAQKNLGPAGVTVAIIRRALLERVPDTLPPMLDFRTHVEHRSN 237 (364)
T ss_pred --cccccCCCeEEEEcCchhhCCCCChHHc--cEEEeeccccCCCCceEEEEECHHHHhhccccCCchhhHHHHHhcCCC
Confidence 4444578999999999999999999988 9999999997789999999999998876554222 1100 12223
Q ss_pred ccCcchhHHHHHHHHHHHH-HH--hHHHHHHHHHHHHHHHHHHHhhccCceEEe-CCCCCCCCceEEEEEcccC-hhHHH
Q psy15216 233 SGTLATHQIVGMGEAFRLA-RI--EMKEELKRILFLQKRLYNGLMESIEEIYIN-GDMNNRIPHNLNISFNFIE-GESLL 307 (2602)
Q Consensus 233 ~gt~~~~~~~al~~al~~~-~~--~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~-~~~~~~~~~~~~~~~~~~~-~~~~~ 307 (2602)
..||++..++++..+|+++ ++ +++++.+++++.++.+++.+.+ .+++... ..+..|+.-.+.|.+.... ..+|+
T Consensus 238 ~nTPpv~~iy~l~~~l~~i~~e~GGl~~~~~r~~~ka~~ly~~id~-~~~~~~~~~~~~~RS~mnv~f~~~~~~l~~~f~ 316 (364)
T PRK12462 238 YNTPPVFAIYVMALVLRWIRDEIGGVHAMRDINARKAAMLYATLDA-LNEVIDCHAHRAARSTMNVAFRFRQPRLDTLFK 316 (364)
T ss_pred CCCchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHh-CCCcccCCCChhhcCcceEEEEcCCHHHHHHHH
Confidence 4599999999999999965 46 8999999999999999999988 5655443 3345555444444443322 23444
Q ss_pred HHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 308 MAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 308 ~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
+.. +|+.--.|+ +.-|.+|+|+..-.+.|+++.|++.+++
T Consensus 317 ~~a~~~gl~~lkGh---------------------r~vgg~Ras~yna~~~e~v~~L~~fm~~ 358 (364)
T PRK12462 317 EQSTEAGFCGLSGH---------------------RSIGGIRASLYNAVSEQAVSRLCAFLKD 358 (364)
T ss_pred HHHHHCCCccccCC---------------------cccCceEEEcCCCCCHHHHHHHHHHHHH
Confidence 444 455543332 1126799999999999999999999996
|
|
| >cd00615 Orn_deC_like Ornithine decarboxylase family | Back alignment and domain information |
|---|
Probab=99.77 E-value=3e-18 Score=213.67 Aligned_cols=220 Identities=18% Similarity=0.197 Sum_probs=176.5
Q ss_pred HHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccC
Q psy15216 40 EKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK 119 (2602)
Q Consensus 40 ~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~ 119 (2602)
...++++++.+|+++|++ +.+++++|+|.|+..++.++. ++||+|+++.+.|.++..++... |+++++++++
T Consensus 58 ~g~i~~~~~~~A~~~ga~-~~~~~~~Gst~a~~~~l~al~----~~gd~Vlv~~~~h~s~~~~~~~~---g~~~~~v~~~ 129 (294)
T cd00615 58 TGPIKEAQELAARAFGAK-HTFFLVNGTSSSNKAVILAVC----GPGDKILIDRNCHKSVINGLVLS---GAVPVYLKPE 129 (294)
T ss_pred ChHHHHHHHHHHHHhCCC-CEEEEcCcHHHHHHHHHHHcC----CCCCEEEEeCCchHHHHHHHHHC---CCEEEEecCc
Confidence 456899999999999975 345569999999999999987 89999999999999998887765 8999998775
Q ss_pred CC------CccChHHHHhhcc--CCceEEEEecccCcccccccHHHHHHHHHhcCCEEEEeccccc-----ccccccCCC
Q psy15216 120 NN------GLITLSQLEEKIC--SDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAV-----GKIDINIQN 186 (2602)
Q Consensus 120 ~~------~~ld~e~l~~~i~--~~tklv~i~~~~npTG~~~~l~~I~~la~~~g~~livD~a~a~-----g~~~~dl~~ 186 (2602)
.+ +.+|+++++++++ ++++++++++| |++|.++|+++|+++||++|+++++|++|+. +..+.+...
T Consensus 130 ~~~~~~~~~~i~~~~l~~~l~~~~~~k~v~l~~p-~~~G~~~dl~~I~~~~~~~g~~livDeA~~~~~~~~~~~~~~~~~ 208 (294)
T cd00615 130 RNPYYGIAGGIPPETFKKALIEHPDAKAAVITNP-TYYGICYNLRKIVEEAHHRGLPVLVDEAHGAHFRFHPILPSSAAM 208 (294)
T ss_pred cCcccCcCCCCCHHHHHHHHHhCCCceEEEEECC-CCCCEecCHHHHHHHHHhcCCeEEEECcchhhhccCcccCcchhh
Confidence 32 3689999999996 47899999998 7899999999999999999999999999975 333444445
Q ss_pred CCccEEEecccccc-CCCCcEEEEEecCCCC--cccceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHH
Q psy15216 187 YKVDLMSFSAHKIY-GPKGIGALYIRRNPRT--RIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRIL 263 (2602)
Q Consensus 187 ~~~D~~~~S~~K~~-Gp~G~G~l~~~~~~~~--~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~ 263 (2602)
.++|+++.|+||++ |+++.|+++++.+... ++... ...+..++|++..++++..++++......+..++..
T Consensus 209 ~~~div~~S~hK~l~g~~~~~~l~~~~~~~~~~~~~~~------~~~~~ttsps~~~~asl~~a~~~~~~~g~~~~~~~~ 282 (294)
T cd00615 209 AGADIVVQSTHKTLPALTQGSMIHVKGDLVNPDRVNEA------LNLHQSTSPSYLILASLDVARAMMALEGKELVEELI 282 (294)
T ss_pred cCCcEEEEchhcccchHhHHHHHHhCCCcCCHHHHHHH------HHHHCCCCcHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 68999999999954 5777788888765322 11111 123456789999999999999866554566777888
Q ss_pred HHHHHHHHHHh
Q psy15216 264 FLQKRLYNGLM 274 (2602)
Q Consensus 264 ~l~~~l~~~L~ 274 (2602)
++.+.+++++.
T Consensus 283 ~~~~~~r~~l~ 293 (294)
T cd00615 283 ELALYARQEIN 293 (294)
T ss_pred HHHHHHHHHHh
Confidence 88888888764
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life. |
| >PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.6e-17 Score=210.78 Aligned_cols=312 Identities=16% Similarity=0.200 Sum_probs=211.9
Q ss_pred HHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhh-----hccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEec
Q psy15216 1439 IEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHF-----YKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLK 1513 (2602)
Q Consensus 1439 ~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~-----~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~ 1513 (2602)
..++++++++++|.+ ++++++|+|+|+.+++.++... .++|||+|++++++|+++..++... |+++++++
T Consensus 65 ~~~fe~~lA~~~g~~--~~v~~~sGt~al~~aL~al~~~~~~~~~~~pGd~VIv~~~t~~a~~~~v~~~---G~~pv~vd 139 (438)
T PRK15407 65 NDAFEKKLAEFLGVR--YALLVNSGSSANLLAFSALTSPKLGDRALKPGDEVITVAAGFPTTVNPIIQN---GLVPVFVD 139 (438)
T ss_pred HHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHHHHhhccccccCCCCCCEEEECCCCcHHHHHHHHHc---CCEEEEEe
Confidence 678999999999975 6899999999999999876210 2479999999999999998877765 99999999
Q ss_pred cCC-CCCcChhHHHhhccCCceEEEEeccccccccccChHHHHHHhhhcCCEEEEecccccCccccc--CCCCCccEEEE
Q psy15216 1514 PKN-NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDIN--IQNYKVDLMSF 1590 (2602)
Q Consensus 1514 ~~~-~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~~ia~~~gi~vivD~a~~~g~~~~~--l~~~~~D~~v~ 1590 (2602)
+++ ++.+|+++++++++++|++|+++|+ +|...++++|.++|++||+++|+|++|+.|...-+ ...+ .|+.++
T Consensus 140 vd~~~~~id~~~le~~i~~~tkaVi~~~~---~G~p~dl~~I~~la~~~gi~vIeDaa~a~G~~~~g~~~G~~-gd~~~f 215 (438)
T PRK15407 140 VELPTYNIDASLLEAAVSPKTKAIMIAHT---LGNPFDLAAVKAFCDKHNLWLIEDNCDALGSTYDGRMTGTF-GDIATL 215 (438)
T ss_pred cCCCcCCcCHHHHHHHcCcCCeEEEEeCC---CCChhhHHHHHHHHHHCCCEEEEECccchhhhcCCeeeecc-CceEEE
Confidence 874 6789999999999999999999986 88889999999999999999999999999975433 2222 388888
Q ss_pred cccc---ccCCCceEEEEEecCCCCccccccccCCcc-----------------------c----cC---CCCCcchhHH
Q psy15216 1591 SAHK---IYGPKGIGALYIRRNPRTRIEAQIHGGGHE-----------------------Y----GL---RSGTLATHQI 1637 (2602)
Q Consensus 1591 S~~K---~~gp~G~G~l~~~~~~~~~l~~~~~g~~~~-----------------------~----~~---~~gt~~~~~~ 1637 (2602)
|||. +.+..| |+++.+++.+....+.+.+++.. . .+ ..|.. ..+
T Consensus 216 Sf~~~k~~~~geG-G~l~t~d~~l~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~n--~rm 292 (438)
T PRK15407 216 SFYPAHHITMGEG-GAVFTNDPLLKKIIESFRDWGRDCWCAPGCDNTCGKRFGWQLGELPFGYDHKYTYSHLGYN--LKI 292 (438)
T ss_pred eCCCCCCccccCc-eEEEECCHHHHHHHHHHHHhCcccccccccccccccccccccccccccccccccccccccc--cCc
Confidence 8874 433445 89998866433221111111110 0 00 01111 112
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcCCc-EEEeCCCCCCCCceEEEEEec-----CCcHHHHHhc--CC
Q psy15216 1638 VGMGEAFRLAR-IEMKEELKRILFLQKRLYNGLMESIEE-IYINGDMNNRIPHNLNISFNF-----IEGESLLMAI--KD 1708 (2602)
Q Consensus 1638 ~al~~aL~~~~-~~~~~~~~~~~~l~~~l~~~L~~~~~g-l~i~~~~~~~~~~~~~~~~~~-----~~~~~~~~~L--~g 1708 (2602)
--+.+|+...+ ..++...++.+++.+++.+.|.. +++ +.+...+....++...+.+.. .+.+++...| +|
T Consensus 293 sel~AAig~~qL~~l~~~~~~R~~~a~~y~~~L~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~Rd~l~~~L~~~G 371 (438)
T PRK15407 293 TDMQAAIGLAQLEKLPGFIEARKANFAYLKEGLAS-LEDFLILPEATPNSDPSWFGFPITVKEDAGFTRVELVKYLEENK 371 (438)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCccccCcCCCCCeeEEEEEEEEECCcCCCCHHHHHHHHHHCC
Confidence 22334444222 45788889999999999999976 564 333222222223322222221 2357777777 68
Q ss_pred EEEccccccC-CCCCChhHHHH------HcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1709 IAVSSGSACT-SASLEPSYVLR------ALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1709 I~v~~g~~~~-~~~~~~~~~~~------~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
|..+. ++. +.+.++.+... .++..+......+-|+++...|.+|+++++++|++.
T Consensus 372 I~~~~--~~~~~~~~~p~~~~~~~~~~~~~P~ae~~~~~~l~LP~~~~l~~~~v~~i~~~i~~~ 433 (438)
T PRK15407 372 IGTRL--LFAGNLTRQPYFKGVKYRVVGELTNTDRIMNDTFWIGVYPGLTEEMLDYVIEKIEEF 433 (438)
T ss_pred CCccc--cCCCccccChhhhhcCCCCCCCChHHHHHHhCeEEecCCCCCCHHHHHHHHHHHHHH
Confidence 76553 232 22233322211 122233334577999999999999999999999973
|
|
| >PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.5e-17 Score=212.88 Aligned_cols=306 Identities=13% Similarity=0.093 Sum_probs=194.7
Q ss_pred cchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHHH-HHhCCc
Q psy15216 33 HIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDGF 111 (2602)
Q Consensus 33 ~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~-~~~~G~ 111 (2602)
|.+++...+....+++++|++.|.+ ..++++|++.|+++++. +. +|||+|+++++.|++....+.. +.+.|+
T Consensus 42 ~~y~r~~~p~~~~Le~~la~l~g~~--~al~~~SG~~Al~~~l~-~l----~pGd~Vi~~~~~y~~t~~~~~~~~~~~gi 114 (380)
T PRK06176 42 YEYSRSGNPTRFALEELIADLEGGV--KGFAFASGLAGIHAVFS-LF----QSGDHVLLGDDVYGGTFRLFDKVLVKNGL 114 (380)
T ss_pred CcccCCCChhHHHHHHHHHHHhCCC--CEEEECCHHHHHHHHHH-Hc----CCCCEEEEcCCChhHHHHHHHHHHHhcCe
Confidence 4556656667899999999999975 33555666779987664 44 7999999999999987666643 467799
Q ss_pred EEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHhcCCEEEEecccccccccccCCCCCccE
Q psy15216 112 RVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDL 191 (2602)
Q Consensus 112 ~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~~g~~livD~a~a~g~~~~dl~~~~~D~ 191 (2602)
++++++. .|+++++++++++|++|++++|+||||.+.|+++|+++||++|+++++|++++.+.....+ .+++|+
T Consensus 115 ~v~~vd~-----~d~e~l~~ai~~~t~lV~lesP~Nptg~~~di~~I~~la~~~gi~vivD~t~a~~~~~~p~-~~gaDi 188 (380)
T PRK06176 115 SCTIIDT-----SDLSQIKKAIKPNTKALYLETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFATPYYQNPL-LLGADI 188 (380)
T ss_pred EEEEcCC-----CCHHHHHHhcCcCceEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEECCccccccCCcc-ccCCCE
Confidence 9998875 3899999999999999999999999999999999999999999999999999876543333 568999
Q ss_pred EEeccccccCCCC---cEEEEEec-CCCCcccceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy15216 192 MSFSAHKIYGPKG---IGALYIRR-NPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQK 267 (2602)
Q Consensus 192 ~~~S~~K~~Gp~G---~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~ 267 (2602)
+++|++|+++.+| .|+++.++ ++.++++.... ......+....+.+..+++. +..+.++..+.+.
T Consensus 189 vv~S~tK~l~g~~d~~gG~vv~~~~~~~~~~~~~~~-------~~G~~~~~~~~~l~~~gl~t----l~~R~~~~~~~a~ 257 (380)
T PRK06176 189 VVHSGTKYLGGHSDVVAGLVTTNNEALAQEIAFFQN-------AIGGVLGPQDSWLLQRGIKT----LGLRMEAHQKNAL 257 (380)
T ss_pred EEecCceeccCCccceeeEEEecHHHHHHHHHHHHH-------HhcCCCCHHHHHHHHhccCc----HHHHHHHHHHHHH
Confidence 9999999765433 57677653 33333432211 11111222222222223322 2334444445566
Q ss_pred HHHHHHhhccCceE-EeCCC--CC-----------CCCceEEEEEcc-cChhHHHHHh--CCeEEcccccCC----CCC-
Q psy15216 268 RLYNGLMESIEEIY-INGDM--NN-----------RIPHNLNISFNF-IEGESLLMAI--KDIAVSSGSACT----SAS- 325 (2602)
Q Consensus 268 ~l~~~L~~~~~g~~-l~~~~--~~-----------~~~~~~~~~~~~-~~~~~~~~~L--~gI~v~~g~~~~----~~~- 325 (2602)
.+.+.|.+ .|.+. ++-|. ++ .....+.|.+.. ....++++.| ..+.++-|...+ +..
T Consensus 258 ~la~~L~~-~p~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~f~~~l~~~~~~~s~G~~~sl~~~p~~~ 336 (380)
T PRK06176 258 CVAEFLEK-HPKVEKVYYPGLPTHPNHELAKKQMRGFSGMLSFTLKNDSEAVAFVESLKLFILGESLGGVESLVGIPAFM 336 (380)
T ss_pred HHHHHHHh-CCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCHHHHHHHHHcCCcceEccCCCCCCceeeCCccc
Confidence 66666655 45543 22111 10 112233444432 1233556665 344454443321 110
Q ss_pred ---CChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHH
Q psy15216 326 ---LEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK 367 (2602)
Q Consensus 326 ---~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~ 367 (2602)
..+.-.....|+++ +.||+|+|..+.++-++.+-++|+
T Consensus 337 ~~~~~~~~~~~~~gi~~----~liR~svGlE~~~dli~dl~~Al~ 377 (380)
T PRK06176 337 THACIPKEQREAAGIRD----GLVRLSVGIEHEQDLLEDLEQAFA 377 (380)
T ss_pred ccccCCHHHHHhcCCCc----CeEEEEeccCCHHHHHHHHHHHHh
Confidence 01112234567763 789999998665555556666655
|
|
| >PRK08247 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.9e-17 Score=210.56 Aligned_cols=305 Identities=15% Similarity=0.114 Sum_probs=200.4
Q ss_pred CcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHHH-HHhCC
Q psy15216 32 NHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDG 110 (2602)
Q Consensus 32 ~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~-~~~~G 110 (2602)
.+.+++...+..+++++.+|+++|++. .++++|+++|+.+++ ++. ++||+|+++++.|++....+.. ++..|
T Consensus 43 ~~~y~r~~~pt~~~le~~la~l~g~~~--~~~~~sG~~ai~~~~-~ll----~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G 115 (366)
T PRK08247 43 GFDYSRTGNPTRGVLEQAIADLEGGDQ--GFACSSGMAAIQLVM-SLF----RSGDELIVSSDLYGGTYRLFEEHWKKWN 115 (366)
T ss_pred CccccCCCCchHHHHHHHHHHHhCCCc--EEEEcCHHHHHHHHH-HHh----CCCCEEEEecCCcCcHHHHHHHHhhccC
Confidence 355666666778999999999999864 477888889998775 444 6999999999999987665543 45679
Q ss_pred cEEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHhcCCEEEEecccccccccccCCCCCcc
Q psy15216 111 FRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVD 190 (2602)
Q Consensus 111 ~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~~g~~livD~a~a~g~~~~dl~~~~~D 190 (2602)
+++++++. .|+++++++++++|++|++++|+||+|.+.++++|+++|++||+++|+|++++.+.....+ ..++|
T Consensus 116 ~~v~~vd~-----~d~~~l~~~i~~~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t~~~~~~~~p~-~~g~d 189 (366)
T PRK08247 116 VRFVYVNT-----ASLKAIEQAITPNTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTFYTPVLQRPL-EEGAD 189 (366)
T ss_pred ceEEEECC-----CCHHHHHHhcccCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCccccccCch-hcCCc
Confidence 99999875 3899999999999999999999999999999999999999999999999999766543322 35789
Q ss_pred EEEeccccccCCC-C--cEEEEEe-cCCCCcccceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy15216 191 LMSFSAHKIYGPK-G--IGALYIR-RNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQ 266 (2602)
Q Consensus 191 ~~~~S~~K~~Gp~-G--~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~ 266 (2602)
+++.|++|+++++ + .|+++.+ +++.+.+..... ......+....+.+..+++ .+....++.++++
T Consensus 190 i~i~S~sK~~~g~~d~~~G~iv~~~~~l~~~~~~~~~-------~~g~~~s~~~a~l~~~~l~----tl~~r~~~~~~~a 258 (366)
T PRK08247 190 IVIHSATKYLGGHNDVLAGLVVAKGQELCERLAYYQN-------AAGAVLSPFDSWLLIRGMK----TLALRMRQHEENA 258 (366)
T ss_pred EEEeecceeccCCCceeeeEEecChHHHHHHHHHHHH-------hcCCCCChHHHHHHHhccC----cHHHHHHHHHHHH
Confidence 9999999966543 3 5777775 444444432221 1111233322222223343 2345555678888
Q ss_pred HHHHHHHhhccCceEEeCCCCCCCCceEEEEEccc-ChhHHHHHh--CCeEEcccccCC----CC---C-CChHHHHHHc
Q psy15216 267 KRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI-EGESLLMAI--KDIAVSSGSACT----SA---S-LEPSYVLRAL 335 (2602)
Q Consensus 267 ~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~L--~gI~v~~g~~~~----~~---~-~~~~~~~~~~ 335 (2602)
+.+.+.|++ .|++..+..+. ...++.|.+... ....++..+ ..+..+-|...+ |. + ..+.......
T Consensus 259 ~~l~~~L~~-~p~v~~v~~P~--~gg~~sf~~~~~~~~~~~~~~l~~~~~~~slg~~~sl~~~p~~~~~~~~~~~~r~~~ 335 (366)
T PRK08247 259 KAIAAFLNE-QPGVTDVLYPG--RGGMLSFRLQDEEWVNPFLKSLKLITFAESLGGVESFITYPATQTHADIPEEIRIAN 335 (366)
T ss_pred HHHHHHHHh-CCCeeEEecCC--cCcEEEEEECCHHHHHHHHHcCCcceEccCCCCCceEEECCcccccccCCHHHHHhc
Confidence 888999987 68876432221 122333333321 112344444 233333221110 11 0 1122333455
Q ss_pred CCCccCCCCeEEEecCCCCCHHHHHHHHHHHH
Q psy15216 336 GCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK 367 (2602)
Q Consensus 336 g~~~~~~~~~iRis~~~~~t~edid~li~~L~ 367 (2602)
|+. .+.+|+|+|..+.++-++.+.++|+
T Consensus 336 gi~----~~~~R~svGlE~~~dl~~dl~~al~ 363 (366)
T PRK08247 336 GVC----NRLLRFSVGIENVEDLIADLKQAFK 363 (366)
T ss_pred CCC----CCeEEEEeccCCHHHHHHHHHHHHh
Confidence 665 3789999998665555555555555
|
|
| >PLN02242 methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.7e-17 Score=211.12 Aligned_cols=308 Identities=15% Similarity=0.121 Sum_probs=204.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHHH--HhCCc
Q psy15216 1430 IYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL--ENDGF 1507 (2602)
Q Consensus 1430 ~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~--~~~G~ 1507 (2602)
.+++......+++++.+++++|.+ .+++++|+++|+..++.++. ++||+|+++.+.|+.+...+... +..|+
T Consensus 69 ~Y~r~~~Pt~~~LE~~lA~l~g~~--~~l~~~sG~~Ai~~al~al~----~~GD~Vl~~~~~Y~~~~~~~~~~~~~~~G~ 142 (418)
T PLN02242 69 IYSRHFNPTVLNLGRQMAALEGTE--AAYCTASGMSAISSVLLQLC----SSGGHVVASNTLYGGTHALLAHFLPRKCNI 142 (418)
T ss_pred cccCCCChhHHHHHHHHHHHhCCC--eEEEEccHHHHHHHHHHHHh----CCCCEEEEcCCcHHHHHHHHHHhhhhccCc
Confidence 344434456889999999999975 56789999999999999987 89999999999998876655322 23588
Q ss_pred EEEEeccCCCCCcChhHHHhhccC-CceEEEEeccccccccccChHHHHHHhhhcCCEEEEecccccCcccccCCCCCcc
Q psy15216 1508 RVTYLKPKNNGLITLSQLEEKICS-DTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVD 1586 (2602)
Q Consensus 1508 ~v~~v~~~~~~~id~d~l~~~i~~-~t~lv~l~~~~n~tG~~~~l~~I~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D 1586 (2602)
++++++.. |++++++++++ +|++|++++|+||||.+.|+++|.++|++||+++|+|++|+... ++...++.|
T Consensus 143 ~~~~~d~~-----d~e~l~~~i~~~~tklV~lesp~NPtG~v~dl~~I~~la~~~gi~livDea~~~~~--~~~~~~g~d 215 (418)
T PLN02242 143 TTTFVDIT-----DLEAVKKAVVPGKTKVLYFESISNPTLTVADIPELARIAHEKGVTVVVDNTFAPMV--LSPARLGAD 215 (418)
T ss_pred eEEEcCCC-----CHHHHHHhcCcCCCEEEEEecCCCCCCcccCHHHHHHHHHHhCCEEEEECCCCccC--CCHHHcCCc
Confidence 88877643 89999999998 59999999999999999999999999999999999999996443 344456789
Q ss_pred EEEEccccccCCCc---eEEEEEecCCCCccccccccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15216 1587 LMSFSAHKIYGPKG---IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQK 1663 (2602)
Q Consensus 1587 ~~v~S~~K~~gp~G---~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~ 1663 (2602)
+++.|++|.+++.| .|+++.++++++.+.....+. ....|. ....+.|+..++.. ..+...++++.++++
T Consensus 216 ivv~S~SK~l~g~g~~~gG~iv~~~~li~~l~~~~~~~----~~~~g~-~~~~~~A~l~~~~l--~tl~~r~~~~~~~a~ 288 (418)
T PLN02242 216 VVVHSISKFISGGADIIAGAVCGPAELVNSMMDLHHGA----LMLLGP-TMNPKVAFELSERL--PHLSLRMKEHCRRAM 288 (418)
T ss_pred EEEEeCccccCCCCCceEEEEEcCHHHHHHHHHHhhhh----hhccCC-CCCHHHHHHHHcCC--CcHHHHHHHHHHHHH
Confidence 99999999776665 588998877666655432110 011232 33333333233321 134556678888999
Q ss_pred HHHHHHhhcCCcEEEeCCC--CC---------C---CCceEEEEEecCC---cHHHHHhcC------CEEEccccccCCC
Q psy15216 1664 RLYNGLMESIEEIYINGDM--NN---------R---IPHNLNISFNFIE---GESLLMAIK------DIAVSSGSACTSA 1720 (2602)
Q Consensus 1664 ~l~~~L~~~~~gl~i~~~~--~~---------~---~~~~~~~~~~~~~---~~~~~~~L~------gI~v~~g~~~~~~ 1720 (2602)
++.+.|.+ . ++.+..|. ++ . ...+..++|.... ...|+..|+ .+.++-|....--
T Consensus 289 ~la~~L~~-~-~~~V~yP~l~~~p~~~~~~~~~~~~~g~g~~~sf~l~~~~~~~~f~~~l~~~~~~~~~~~slG~~~sl~ 366 (418)
T PLN02242 289 EYAKRMKE-L-GLKVIYPGLEDHPQHALLKSMANKGYGFGGLLCLDMDTEERANRLMRYLQNSTQFGFMAVSLGYYETLM 366 (418)
T ss_pred HHHHHHHh-C-CCEEECCCCCCCccHHHHHHhcccCCCceeEEEEEECCHHHHHHHHHHhhcccccceeeecCCCCCcee
Confidence 99999988 3 45555322 11 0 1223344444322 234555553 3445545333211
Q ss_pred C--------CChhHHHHHcCCCccccCCeEEEecCCCC-CHHHHHHHHHHHH
Q psy15216 1721 S--------LEPSYVLRALGCNDELAHSSIRFTIGRFT-TEKEIDFTIKLLK 1763 (2602)
Q Consensus 1721 ~--------~~~~~~~~~~~~~~~~~~~~iRls~~~~~-t~edid~li~~L~ 1763 (2602)
. ..+.-.....|+++ +.||||+|... .++-|+.+-++|+
T Consensus 367 ~~p~~~~~~~~~~~~~~~~gi~~----~liRlsvGlE~~~~dli~dl~~al~ 414 (418)
T PLN02242 367 SCSGSSTSSELDPEEKAAAGISP----GLVRMSVGYTGTLEQRWSQFEKALS 414 (418)
T ss_pred eCCCccccccCCHHHHHhcCCCC----CeEEEEecCCCCHHHHHHHHHHHHH
Confidence 0 11112223456553 78999999863 4444444444544
|
|
| >PRK07050 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=8e-18 Score=216.53 Aligned_cols=308 Identities=14% Similarity=0.087 Sum_probs=200.6
Q ss_pred cchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHHH-HHhCCc
Q psy15216 33 HIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDGF 111 (2602)
Q Consensus 33 ~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~-~~~~G~ 111 (2602)
+.|++...+..+++++.+++++|.+ ++++++|+++|+.+++.++. ++||+|+++++.|+++...+.. +...|+
T Consensus 57 ~~Y~r~~~pt~~~Le~~lA~l~g~~--~~l~~~sgt~Ai~~~l~al~----~~GD~Vl~~~~~y~~~~~~~~~~~~~~Gi 130 (394)
T PRK07050 57 WRYGLHATPTSLALAQRLAEIEGGR--HALLQPSGLAAISLVYFGLV----KAGDDVLIPDNAYGPNRDHGEWLARDFGI 130 (394)
T ss_pred cccCCCCCHHHHHHHHHHHHHhCCC--eEEEeccHHHHHHHHHHHHh----CCCCEEEEecCCcccHHHHHHHHHHhcCe
Confidence 4455555667899999999999964 89999999999999999987 8999999999999998776643 466799
Q ss_pred EEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHhcCCEEEEecccccccccccCCCCCccE
Q psy15216 112 RVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDL 191 (2602)
Q Consensus 112 ~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~~g~~livD~a~a~g~~~~dl~~~~~D~ 191 (2602)
++++++.. +.++++++++++||+|++++|+||+|.+.|+++|+++|+++|+++++|++|+.|.. ......++|+
T Consensus 131 ~v~~vd~~-----~~~~l~~~i~~~tklV~le~p~Np~~~~~di~~I~~ia~~~gi~livD~a~a~~~~-~~~l~~GaDi 204 (394)
T PRK07050 131 TVRFYDPL-----IGAGIADLIQPNTRLIWLEAPGSVTMEVPDVPAITAAARARGVVTAIDNTYSAGLA-FKPFEHGVDI 204 (394)
T ss_pred EEEEECCC-----CHHHHHHhcCCCCeEEEEECCCCCCccHhhHHHHHHHHHHcCCEEEEECCcccccc-cCHHHcCCeE
Confidence 99998743 45789999999999999999999999999999999999999999999999988764 2333457899
Q ss_pred EEeccccccCCC-C--cEEEEE-ecCCCCcccceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy15216 192 MSFSAHKIYGPK-G--IGALYI-RRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQK 267 (2602)
Q Consensus 192 ~~~S~~K~~Gp~-G--~G~l~~-~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~ 267 (2602)
++.|++|.++.. + .|+++. ++++.++++.... ...++.+....+.+...++ .+..+.++..+++.
T Consensus 205 ~v~S~tK~~~g~~~~~gG~v~~~~~~~~~~~~~~~~-------~~G~~~~~~~a~l~lr~l~----tl~~Rl~~~~~~a~ 273 (394)
T PRK07050 205 SVQALTKYQSGGSDVLMGATITADAELHAKLKLARM-------RLGIGVSADDCSLVLRGLP----SLQVRLAAHDRSAL 273 (394)
T ss_pred EEEECCceecCCCCeeEEEEEECCHHHHHHHHHHHH-------hcCCCCCHHHHHHHHcCCC----cHHHHHHHHHHHHH
Confidence 999999965433 2 466666 4445555543221 1112222222221112222 23334555555566
Q ss_pred HHHHHHhhccCceE-EeCCC--CC-----------CCCceEEEEEcc----cChhHHHHHh--CCeEEcccccCCCCC--
Q psy15216 268 RLYNGLMESIEEIY-INGDM--NN-----------RIPHNLNISFNF----IEGESLLMAI--KDIAVSSGSACTSAS-- 325 (2602)
Q Consensus 268 ~l~~~L~~~~~g~~-l~~~~--~~-----------~~~~~~~~~~~~----~~~~~~~~~L--~gI~v~~g~~~~~~~-- 325 (2602)
.+.+.|++ .|.+. ++-|. +. .....+.|.+.. .+..++++.| .++.++-|...+--.
T Consensus 274 ~la~~L~~-~p~v~~v~~p~l~~~p~~~~~~~~~~~~g~~~s~~l~~~~~~~~~~~~~~~l~~~~~~~s~G~~~sl~~~~ 352 (394)
T PRK07050 274 EVAEWLKA-RPEIATVLHPALPDCPGHAFWMRDFTGAGGLFSVVFDERYSPAQVDAFVEALELFAIGWSWGGACSLAMPY 352 (394)
T ss_pred HHHHHHHh-CCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECCCCCHHHHHHHHHcCCCCeeccccCCccceEeeC
Confidence 66666665 45443 22111 00 112234444432 1244666666 455566554433110
Q ss_pred CChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 326 LEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 326 ~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
......+...+ ...+.||+|+|..+.++-++.+.++|..
T Consensus 353 ~~~~~~~~~~~----~~~~~iR~svGlE~~~dl~~dl~~al~~ 391 (394)
T PRK07050 353 DVASMRTAKWP----HRGTLVRLYIGLEDEADLIADLEQALEA 391 (394)
T ss_pred cccccchhhcC----CCCCEEEEEeCcCCHHHHHHHHHHHHHH
Confidence 00001111222 2348899999986655555566666653
|
|
| >PLN02509 cystathionine beta-lyase | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.5e-17 Score=208.16 Aligned_cols=299 Identities=16% Similarity=0.131 Sum_probs=196.9
Q ss_pred HHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHHH-HHhCCcEEEEecc
Q psy15216 40 EKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDGFRVTYLKP 118 (2602)
Q Consensus 40 ~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~-~~~~G~~v~~v~~ 118 (2602)
.+..+++++++|++.|.+ ..++++|++.|+.+++ .+. ++||+|+++.+.|+++...+.. +.+.|+++++++.
T Consensus 132 npt~~aLE~~lA~leg~e--~ai~~~SG~aAi~~il-~ll----~~GD~VI~~~~~y~~t~~ll~~~l~~~G~~v~~vd~ 204 (464)
T PLN02509 132 NPTRDALESLLAKLDKAD--RAFCFTSGMAALSAVT-HLI----KNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNT 204 (464)
T ss_pred CHHHHHHHHHHHHHhCCC--EEEEeCcHHHHHHHHH-HHh----CCCCEEEEcCCchhhHHHHHHHHHHHCCeEEEEeCC
Confidence 356889999999999854 5667777788887655 344 7999999999999998766644 3667999998864
Q ss_pred CCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHhcCCEEEEecccccccccccCCCCCccEEEecccc
Q psy15216 119 KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK 198 (2602)
Q Consensus 119 ~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~~g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K 198 (2602)
.|+++++++++++|++|++++|+||+|.+.|+++|+++||+||+++++|++|+.+.....+ ..++|++++|++|
T Consensus 205 -----~d~e~l~~ai~~~TklV~lesPsNPtG~i~Dl~~I~~lAk~~g~~lIVD~A~a~~~~~~pl-~~gaDivv~S~tK 278 (464)
T PLN02509 205 -----TNLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKIAEMAHAQGALVLVDNSIMSPVLSRPL-ELGADIVMHSATK 278 (464)
T ss_pred -----CCHHHHHHhCCcCCeEEEEECCCCCCCCHHHHHHHHHHHHHcCCEEEEECCccccccCChh-hcCCcEEEecCcc
Confidence 3789999999999999999999999999999999999999999999999999888754333 4678999999999
Q ss_pred cc-CCCC--cEEEEEecCC-CCcccceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Q psy15216 199 IY-GPKG--IGALYIRRNP-RTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLM 274 (2602)
Q Consensus 199 ~~-Gp~G--~G~l~~~~~~-~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~ 274 (2602)
++ |+.+ .|+++++++. .+.+..... ......+....+.+..+|+ .+..+.++..++++++.+.|+
T Consensus 279 ~l~G~gdv~gG~v~~~~~~l~~~~~~~~~-------~~g~~l~p~~A~l~lr~L~----tL~~R~~r~~~nA~~la~~L~ 347 (464)
T PLN02509 279 FIAGHSDVMAGVLAVKGEKLAKEVYFLQN-------SEGSGLAPFDCWLCLRGIK----TMALRIEKQQENARKIAMYLS 347 (464)
T ss_pred cccCCCccceeEEEeccHHHHHHHHHHHH-------hcCCCcCHHHHHHHHhhhh----hHHHHHHHHHHHHHHHHHHHh
Confidence 55 4444 6888876542 222221110 1111223333332333333 346677788888888888887
Q ss_pred hccCceE-EeCC--CCC---------CCCceEEEEEcccC---hhHHHHHhC--CeEEcccccCCC-------CC-CChH
Q psy15216 275 ESIEEIY-INGD--MNN---------RIPHNLNISFNFIE---GESLLMAIK--DIAVSSGSACTS-------AS-LEPS 329 (2602)
Q Consensus 275 ~~~~g~~-l~~~--~~~---------~~~~~~~~~~~~~~---~~~~~~~L~--gI~v~~g~~~~~-------~~-~~~~ 329 (2602)
+ .|.++ +.-| +++ ....+..++|...+ ...+++.|+ .+.++-|...+- .| ..+.
T Consensus 348 ~-~p~V~~V~yPgL~~~p~~~l~~~~~~g~gg~~sf~~~~~~~~~~f~~~l~l~~~a~slG~~~SLi~~p~~~sh~~~~~ 426 (464)
T PLN02509 348 S-HPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGSVALSKHLVETTKYFSIAVSFGSVKSLISMPCFMSHASIPA 426 (464)
T ss_pred c-CCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEeCCHHHHHHHHHcCCcceEcccCCCCCceeeCCcccccccCCH
Confidence 6 56653 2211 111 01123334443222 345666663 455555532221 01 1112
Q ss_pred HHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHH
Q psy15216 330 YVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK 367 (2602)
Q Consensus 330 ~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~ 367 (2602)
......|++ ++.||+|+|..+.++=++.+.++|+
T Consensus 427 ~~~~~~Gi~----~~liRlSvGlE~~~DLi~Dl~~Al~ 460 (464)
T PLN02509 427 EVREARGLT----EDLVRISAGIEDVDDLISDLDIAFR 460 (464)
T ss_pred HHHHhcCCC----CCeEEEEeccCCHHHHHHHHHHHHc
Confidence 233456765 3889999997654444445555544
|
|
| >PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.1e-17 Score=207.78 Aligned_cols=167 Identities=20% Similarity=0.240 Sum_probs=137.1
Q ss_pred cchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHH-HHHHhCCc
Q psy15216 33 HIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSI-RKLENDGF 111 (2602)
Q Consensus 33 ~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~-~~~~~~G~ 111 (2602)
+.+++...+..+.+++.+++++|++ ..+++++| +.|+.+++.++. ++||+|++++.+|+++...+ ..+++.|+
T Consensus 61 ~~Y~r~~~pt~~~le~~la~l~g~~-~~v~fsSG-~~Ai~~al~~ll----~~Gd~VI~~~~~y~~t~~~~~~~l~~~Gi 134 (437)
T PRK05613 61 PIYSRLTNPTVEALENRIASLEGGV-HAVAFASG-QAAETAAILNLA----GAGDHIVTSPRLYGGTETLFLVTLNRLGI 134 (437)
T ss_pred ceeeCccChHHHHHHHHHHHHhCCC-eEEEeCCH-HHHHHHHHHHhc----CCCCEEEECCCccHHHHHHHHHHHHhcCe
Confidence 3455555567899999999999984 44555555 588888888776 79999999999999985544 45577899
Q ss_pred EEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHhcCCEEEEecccccccccccCCCCCccE
Q psy15216 112 RVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDL 191 (2602)
Q Consensus 112 ~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~~g~~livD~a~a~g~~~~dl~~~~~D~ 191 (2602)
++++++ ++ .|+++++++++++|++|++.++.||+|.+.|+++|+++||++|+++++|++++.|.. .+..++|+|+
T Consensus 135 ~v~~vd-~~---~d~e~l~~~l~~~tk~V~~e~~~Np~~~v~di~~I~~la~~~gi~livD~t~a~g~~-~~p~~~GaDi 209 (437)
T PRK05613 135 EVTFVE-NP---DDPESWQAAVQPNTKAFFGETFANPQADVLDIPAVAEVAHRNQVPLIVDNTIATAAL-VRPLELGADV 209 (437)
T ss_pred EEEEEC-CC---CCHHHHHHhCCccCeEEEEECCCCCCCcccCHHHHHHHHHHcCCeEEEECCCccccc-cChHHhCCCE
Confidence 999997 32 289999999999999999999999999999999999999999999999999988765 3444678999
Q ss_pred EEeccccccCCCC--cEEEEE
Q psy15216 192 MSFSAHKIYGPKG--IGALYI 210 (2602)
Q Consensus 192 ~~~S~~K~~Gp~G--~G~l~~ 210 (2602)
+++|+||++|++| +|.+++
T Consensus 210 vv~S~~K~l~G~gd~~gG~vv 230 (437)
T PRK05613 210 VVASLTKFYTGNGSGLGGVLI 230 (437)
T ss_pred EEeeccceecCCCcceeEEEE
Confidence 9999999888775 354444
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 2602 | ||||
| 1p3w_B | 404 | X-Ray Crystal Structure Of E. Coli Iscs Length = 40 | 1e-152 | ||
| 1p3w_B | 404 | X-Ray Crystal Structure Of E. Coli Iscs Length = 40 | 1e-150 | ||
| 3lvj_A | 423 | Crystal Structure Of E.Coli Iscs-Tusa Complex (Form | 1e-152 | ||
| 3lvj_A | 423 | Crystal Structure Of E.Coli Iscs-Tusa Complex (Form | 1e-150 | ||
| 2kho_A | 605 | Nmr-Rdc XRAY STRUCTURE OF E. COLI HSP70 (DNAK) CHAP | 1e-95 | ||
| 2kho_A | 605 | Nmr-Rdc XRAY STRUCTURE OF E. COLI HSP70 (DNAK) CHAP | 1e-95 | ||
| 4b9q_A | 605 | Open Conformation Of Atp-Bound Hsp70 Homolog Dnak L | 2e-92 | ||
| 4b9q_A | 605 | Open Conformation Of Atp-Bound Hsp70 Homolog Dnak L | 2e-92 | ||
| 2v7y_A | 509 | Crystal Structure Of The Molecular Chaperone Dnak F | 5e-90 | ||
| 2v7y_A | 509 | Crystal Structure Of The Molecular Chaperone Dnak F | 5e-90 | ||
| 3c7n_B | 554 | Structure Of The Hsp110:hsc70 Nucleotide Exchange C | 6e-89 | ||
| 3c7n_B | 554 | Structure Of The Hsp110:hsc70 Nucleotide Exchange C | 6e-89 | ||
| 1yuw_A | 554 | Crystal Structure Of Bovine Hsc70(Aa1-554)e213aD214 | 2e-88 | ||
| 1yuw_A | 554 | Crystal Structure Of Bovine Hsc70(Aa1-554)e213aD214 | 2e-88 | ||
| 2v7z_A | 543 | Crystal Structure Of The 70-Kda Heat Shock Cognate | 4e-88 | ||
| 2v7z_A | 543 | Crystal Structure Of The 70-Kda Heat Shock Cognate | 4e-88 | ||
| 4eb5_A | 382 | A. Fulgidus Iscs-Iscu Complex Structure Length = 38 | 6e-79 | ||
| 4eb5_A | 382 | A. Fulgidus Iscs-Iscu Complex Structure Length = 38 | 3e-77 | ||
| 3vax_A | 400 | Crytal Structure Of Dnda From Streptomyces Lividans | 9e-73 | ||
| 3vax_A | 400 | Crytal Structure Of Dnda From Streptomyces Lividans | 7e-72 | ||
| 1ecx_A | 384 | Nifs-Like Protein Length = 384 | 3e-68 | ||
| 1ecx_A | 384 | Nifs-Like Protein Length = 384 | 5e-68 | ||
| 1dkg_D | 383 | Crystal Structure Of The Nucleotide Exchange Factor | 9e-67 | ||
| 1dkg_D | 383 | Crystal Structure Of The Nucleotide Exchange Factor | 9e-67 | ||
| 3qfp_A | 390 | Crystal Structure Of Yeast Hsp70 (BipKAR2) ATPASE D | 9e-66 | ||
| 3qfp_A | 390 | Crystal Structure Of Yeast Hsp70 (BipKAR2) ATPASE D | 9e-66 | ||
| 3qfu_A | 394 | Crystal Structure Of Yeast Hsp70 (BipKAR2) COMPLEXE | 1e-65 | ||
| 3qfu_A | 394 | Crystal Structure Of Yeast Hsp70 (BipKAR2) COMPLEXE | 1e-65 | ||
| 1eg5_A | 384 | Nifs-like Protein Length = 384 | 1e-64 | ||
| 1eg5_A | 384 | Nifs-like Protein Length = 384 | 3e-64 | ||
| 3iuc_A | 408 | Crystal Structure Of The Human 70kda Heat Shock Pro | 4e-62 | ||
| 3iuc_A | 408 | Crystal Structure Of The Human 70kda Heat Shock Pro | 4e-62 | ||
| 3ldl_A | 384 | Crystal Structure Of Human Grp78 (70kda Heat Shock | 7e-62 | ||
| 3ldl_A | 384 | Crystal Structure Of Human Grp78 (70kda Heat Shock | 7e-62 | ||
| 2qw9_B | 394 | Crystal Structure Of Bovine Hsc70 (1-394aa)in The A | 6e-57 | ||
| 2qw9_B | 394 | Crystal Structure Of Bovine Hsc70 (1-394aa)in The A | 6e-57 | ||
| 1hpm_A | 386 | How Potassium Affects The Activity Of The Molecular | 7e-57 | ||
| 1hpm_A | 386 | How Potassium Affects The Activity Of The Molecular | 7e-57 | ||
| 1ba1_A | 386 | Heat-Shock Cognate 70kd Protein 44kd Atpase N-Termi | 1e-56 | ||
| 1ba1_A | 386 | Heat-Shock Cognate 70kd Protein 44kd Atpase N-Termi | 1e-56 | ||
| 1ngb_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 2e-56 | ||
| 1ngb_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 2e-56 | ||
| 1bup_A | 386 | T13s Mutant Of Bovine 70 Kilodalton Heat Shock Prot | 3e-56 | ||
| 1bup_A | 386 | T13s Mutant Of Bovine 70 Kilodalton Heat Shock Prot | 3e-56 | ||
| 1atr_A | 386 | Threonine 204 Of The Chaperone Protein Hsc70 Influe | 4e-56 | ||
| 1atr_A | 386 | Threonine 204 Of The Chaperone Protein Hsc70 Influe | 4e-56 | ||
| 1ngd_A | 386 | Structural Basis Of The 70-kilodalton Heat Shock Co | 4e-56 | ||
| 1ngd_A | 386 | Structural Basis Of The 70-kilodalton Heat Shock Co | 4e-56 | ||
| 1ngf_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 4e-56 | ||
| 1ngf_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 4e-56 | ||
| 1ngh_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 4e-56 | ||
| 1ngh_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 4e-56 | ||
| 1ats_A | 386 | Threonine 204 Of The Chaperone Protein Hsc70 Influe | 4e-56 | ||
| 1ats_A | 386 | Threonine 204 Of The Chaperone Protein Hsc70 Influe | 4e-56 | ||
| 1nga_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 5e-56 | ||
| 1nga_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 5e-56 | ||
| 1ngg_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 5e-56 | ||
| 1ngg_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 5e-56 | ||
| 1ngc_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 5e-56 | ||
| 1ngc_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 5e-56 | ||
| 1nge_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 5e-56 | ||
| 1nge_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 5e-56 | ||
| 1ba0_A | 386 | Heat-Shock Cognate 70kd Protein 44kd Atpase N-Termi | 6e-56 | ||
| 1ba0_A | 386 | Heat-Shock Cognate 70kd Protein 44kd Atpase N-Termi | 6e-56 | ||
| 2qwn_A | 394 | Crystal Structure Of Disulfide-Bond-Crosslinked Com | 8e-56 | ||
| 2qwn_A | 394 | Crystal Structure Of Disulfide-Bond-Crosslinked Com | 8e-56 | ||
| 3i33_A | 404 | Crystal Structure Of The Human 70kda Heat Shock Pro | 1e-55 | ||
| 3i33_A | 404 | Crystal Structure Of The Human 70kda Heat Shock Pro | 1e-55 | ||
| 3fe1_A | 403 | Crystal Structure Of The Human 70kda Heat Shock Pro | 1e-55 | ||
| 3fe1_A | 403 | Crystal Structure Of The Human 70kda Heat Shock Pro | 1e-55 | ||
| 3cqx_A | 386 | Chaperone Complex Length = 386 | 1e-55 | ||
| 3cqx_A | 386 | Chaperone Complex Length = 386 | 1e-55 | ||
| 1hx1_A | 400 | Crystal Structure Of A Bag Domain In Complex With T | 3e-55 | ||
| 1hx1_A | 400 | Crystal Structure Of A Bag Domain In Complex With T | 3e-55 | ||
| 3fzf_A | 381 | Crystal Structure Of Hsc70BAG1 IN COMPLEX WITH ATP | 3e-55 | ||
| 3fzf_A | 381 | Crystal Structure Of Hsc70BAG1 IN COMPLEX WITH ATP | 3e-55 | ||
| 1kaz_A | 381 | 70kd Heat Shock Cognate Protein Atpase Domain, K71e | 4e-55 | ||
| 1kaz_A | 381 | 70kd Heat Shock Cognate Protein Atpase Domain, K71e | 4e-55 | ||
| 3gdq_A | 408 | Crystal Structure Of The Human 70kda Heat Shock Pro | 6e-55 | ||
| 3gdq_A | 408 | Crystal Structure Of The Human 70kda Heat Shock Pro | 6e-55 | ||
| 1kay_A | 381 | 70kd Heat Shock Cognate Protein Atpase Domain, K71a | 6e-55 | ||
| 1kay_A | 381 | 70kd Heat Shock Cognate Protein Atpase Domain, K71a | 6e-55 | ||
| 4fsv_A | 387 | Crystal Structure Of A Heat Shock 70kda Protein 2 ( | 7e-55 | ||
| 4fsv_A | 387 | Crystal Structure Of A Heat Shock 70kda Protein 2 ( | 7e-55 | ||
| 2bup_A | 381 | T13g Mutant Of The Atpase Fragment Of Bovine Hsc70 | 8e-55 | ||
| 2bup_A | 381 | T13g Mutant Of The Atpase Fragment Of Bovine Hsc70 | 8e-55 | ||
| 1kax_A | 381 | 70kd Heat Shock Cognate Protein Atpase Domain, K71m | 9e-55 | ||
| 1kax_A | 381 | 70kd Heat Shock Cognate Protein Atpase Domain, K71m | 9e-55 | ||
| 1qqn_A | 378 | D206s Mutant Of Bovine 70 Kilodalton Heat Shock Pro | 1e-54 | ||
| 1qqn_A | 378 | D206s Mutant Of Bovine 70 Kilodalton Heat Shock Pro | 1e-54 | ||
| 1qqm_A | 378 | D199s Mutant Of Bovine 70 Kilodalton Heat Shock Pro | 1e-54 | ||
| 1qqm_A | 378 | D199s Mutant Of Bovine 70 Kilodalton Heat Shock Pro | 1e-54 | ||
| 3gl1_A | 387 | Crystal Structure Of Atpase Domain Of Ssb1 Chaperon | 2e-54 | ||
| 3gl1_A | 387 | Crystal Structure Of Atpase Domain Of Ssb1 Chaperon | 2e-54 | ||
| 1qqo_A | 378 | E175s Mutant Of Bovine 70 Kilodalton Heat Shock Pro | 2e-54 | ||
| 1qqo_A | 378 | E175s Mutant Of Bovine 70 Kilodalton Heat Shock Pro | 2e-54 | ||
| 3a8y_A | 392 | Crystal Structure Of The Complex Between The Bag5 B | 7e-54 | ||
| 3a8y_A | 392 | Crystal Structure Of The Complex Between The Bag5 B | 7e-54 | ||
| 3jxu_A | 409 | Crystal Structure Of The Human 70kda Heat Shock Pro | 7e-54 | ||
| 3jxu_A | 409 | Crystal Structure Of The Human 70kda Heat Shock Pro | 7e-54 | ||
| 2e8a_A | 391 | Crystal Structure Of The Human Hsp70 Atpase Domain | 7e-54 | ||
| 2e8a_A | 391 | Crystal Structure Of The Human Hsp70 Atpase Domain | 7e-54 | ||
| 2e88_A | 391 | Crystal Structure Of The Human Hsp70 Atpase Domain | 7e-54 | ||
| 2e88_A | 391 | Crystal Structure Of The Human Hsp70 Atpase Domain | 7e-54 | ||
| 3d2f_B | 382 | Crystal Structure Of A Complex Of Sse1p And Hsp70 L | 1e-53 | ||
| 3d2f_B | 382 | Crystal Structure Of A Complex Of Sse1p And Hsp70 L | 1e-53 | ||
| 1s3x_A | 382 | The Crystal Structure Of The Human Hsp70 Atpase Dom | 2e-53 | ||
| 1s3x_A | 382 | The Crystal Structure Of The Human Hsp70 Atpase Dom | 2e-53 | ||
| 1hjo_A | 380 | Atpase Domain Of Human Heat Shock 70kda Protein 1 L | 2e-53 | ||
| 1hjo_A | 380 | Atpase Domain Of Human Heat Shock 70kda Protein 1 L | 2e-53 | ||
| 3kvg_A | 400 | Crystal Structure Of The N-Terminal Domain Of Hsp70 | 3e-53 | ||
| 3kvg_A | 400 | Crystal Structure Of The N-Terminal Domain Of Hsp70 | 3e-53 | ||
| 3d2e_B | 382 | Crystal Structure Of A Complex Of Sse1p And Hsp70, | 3e-53 | ||
| 3d2e_B | 382 | Crystal Structure Of A Complex Of Sse1p And Hsp70, | 3e-53 | ||
| 3a9x_A | 432 | Crystal Structure Of Rat Selenocysteine Lyase Lengt | 9e-46 | ||
| 3a9x_A | 432 | Crystal Structure Of Rat Selenocysteine Lyase Lengt | 4e-44 | ||
| 3gzc_A | 440 | Structure Of Human Selenocysteine Lyase Length = 44 | 1e-44 | ||
| 3gzc_A | 440 | Structure Of Human Selenocysteine Lyase Length = 44 | 2e-42 | ||
| 2l4x_A | 128 | Solution Structure Of Apo-Iscu(Wt) Length = 128 | 8e-44 | ||
| 2l4x_A | 128 | Solution Structure Of Apo-Iscu(Wt) Length = 128 | 8e-44 | ||
| 3gzd_A | 440 | Human Selenocysteine Lyase, P1 Crystal Form Length | 2e-43 | ||
| 3gzd_A | 440 | Human Selenocysteine Lyase, P1 Crystal Form Length | 4e-41 | ||
| 3lvl_A | 129 | Crystal Structure Of E.Coli Iscs-Iscu Complex Lengt | 4e-43 | ||
| 3lvl_A | 129 | Crystal Structure Of E.Coli Iscs-Iscu Complex Lengt | 4e-43 | ||
| 2kqk_A | 128 | Solution Structure Of Apo-Iscu(D39a) Length = 128 | 6e-43 | ||
| 2kqk_A | 128 | Solution Structure Of Apo-Iscu(D39a) Length = 128 | 6e-43 | ||
| 1q48_A | 134 | Solution Nmr Structure Of The Haemophilus Influenza | 1e-41 | ||
| 1q48_A | 134 | Solution Nmr Structure Of The Haemophilus Influenza | 1e-41 | ||
| 1u00_A | 227 | Hsca Substrate Binding Domain Complexed With The Is | 4e-37 | ||
| 1u00_A | 227 | Hsca Substrate Binding Domain Complexed With The Is | 4e-37 | ||
| 1wfz_A | 130 | Solution Structure Of Iron-Sulfur Cluster Protein U | 7e-33 | ||
| 1wfz_A | 130 | Solution Structure Of Iron-Sulfur Cluster Protein U | 7e-33 | ||
| 4ixo_A | 380 | X-ray Structure Of Nifs-like Protein From Rickettsi | 7e-33 | ||
| 4ixo_A | 380 | X-ray Structure Of Nifs-like Protein From Rickettsi | 1e-31 | ||
| 1kon_A | 249 | Crystal Structure Of E.Coli Yebc Length = 249 | 6e-32 | ||
| 3c7n_A | 668 | Structure Of The Hsp110:hsc70 Nucleotide Exchange C | 2e-31 | ||
| 3c7n_A | 668 | Structure Of The Hsp110:hsc70 Nucleotide Exchange C | 2e-31 | ||
| 2qxl_A | 658 | Crystal Structure Analysis Of Sse1, A Yeast Hsp110 | 2e-31 | ||
| 2qxl_A | 658 | Crystal Structure Analysis Of Sse1, A Yeast Hsp110 | 2e-31 | ||
| 3d2f_A | 675 | Crystal Structure Of A Complex Of Sse1p And Hsp70 L | 3e-31 | ||
| 3d2f_A | 675 | Crystal Structure Of A Complex Of Sse1p And Hsp70 L | 3e-31 | ||
| 4f3q_A | 247 | Structure Of A Yebc Family Protein (Cbu_1566) From | 3e-31 | ||
| 3d2e_A | 675 | Crystal Structure Of A Complex Of Sse1p And Hsp70, | 4e-31 | ||
| 3d2e_A | 675 | Crystal Structure Of A Complex Of Sse1p And Hsp70, | 4e-31 | ||
| 1dky_A | 219 | The Substrate Binding Domain Of Dnak In Complex Wit | 4e-26 | ||
| 1dky_A | 219 | The Substrate Binding Domain Of Dnak In Complex Wit | 4e-26 | ||
| 1bpr_A | 191 | Nmr Structure Of The Substrate Binding Domain Of Dn | 5e-26 | ||
| 1bpr_A | 191 | Nmr Structure Of The Substrate Binding Domain Of Dn | 5e-26 | ||
| 3dpo_A | 219 | Crystal Structure Of The Substrate Binding Domain O | 5e-26 | ||
| 3dpo_A | 219 | Crystal Structure Of The Substrate Binding Domain O | 5e-26 | ||
| 1dkx_A | 219 | The Substrate Binding Domain Of Dnak In Complex Wit | 5e-26 | ||
| 1dkx_A | 219 | The Substrate Binding Domain Of Dnak In Complex Wit | 5e-26 | ||
| 1ckr_A | 159 | High Resolution Solution Structure Of The Heat Shoc | 7e-26 | ||
| 1ckr_A | 159 | High Resolution Solution Structure Of The Heat Shoc | 7e-26 | ||
| 1lfp_A | 249 | Crystal Structure Of A Conserved Hypothetical Prote | 1e-25 | ||
| 3dqg_A | 151 | Peptide-Binding Domain Of Heat Shock 70 Kda Protein | 4e-25 | ||
| 3dqg_A | 151 | Peptide-Binding Domain Of Heat Shock 70 Kda Protein | 4e-25 | ||
| 3n8e_A | 182 | Substrate Binding Domain Of The Human Heat Shock 70 | 7e-25 | ||
| 3n8e_A | 182 | Substrate Binding Domain Of The Human Heat Shock 70 | 7e-25 | ||
| 1dg4_A | 115 | Nmr Structure Of The Substrate Binding Domain Of Dn | 6e-24 | ||
| 1dg4_A | 115 | Nmr Structure Of The Substrate Binding Domain Of Dn | 6e-24 | ||
| 1i7h_A | 111 | Crystal Sturcuture Of Fdx Length = 111 | 2e-23 | ||
| 4gni_A | 409 | Structure Of The Ssz1 Atpase Bound To Atp And Magne | 3e-23 | ||
| 4gni_A | 409 | Structure Of The Ssz1 Atpase Bound To Atp And Magne | 3e-23 | ||
| 1q5l_A | 135 | Nmr Structure Of The Substrate Binding Domain Of Dn | 3e-23 | ||
| 1q5l_A | 135 | Nmr Structure Of The Substrate Binding Domain Of Dn | 3e-23 | ||
| 2z7e_A | 157 | Crystal Structure Of Aquifex Aeolicus Iscu With Bou | 4e-22 | ||
| 2z7e_A | 157 | Crystal Structure Of Aquifex Aeolicus Iscu With Bou | 4e-22 | ||
| 3dob_A | 152 | Peptide-Binding Domain Of Heat Shock 70 Kda Protein | 4e-22 | ||
| 3dob_A | 152 | Peptide-Binding Domain Of Heat Shock 70 Kda Protein | 4e-22 | ||
| 2op6_A | 152 | Peptide-Binding Domain Of Heat Shock 70 Kda Protein | 2e-21 | ||
| 2op6_A | 152 | Peptide-Binding Domain Of Heat Shock 70 Kda Protein | 2e-21 | ||
| 4eb5_C | 153 | A. Fulgidus Iscs-Iscu Complex Structure Length = 15 | 3e-21 | ||
| 4eb5_C | 153 | A. Fulgidus Iscs-Iscu Complex Structure Length = 15 | 3e-21 | ||
| 3h0x_A | 152 | Crystal Structure Of Peptide-Binding Domain Of Kar2 | 2e-20 | ||
| 3h0x_A | 152 | Crystal Structure Of Peptide-Binding Domain Of Kar2 | 2e-20 | ||
| 1xqs_C | 191 | Crystal Structure Of The Hspbp1 Core Domain Complex | 1e-17 | ||
| 1xqs_C | 191 | Crystal Structure Of The Hspbp1 Core Domain Complex | 1e-17 | ||
| 1t3i_A | 420 | Structure Of Slr0077SUFS, THE ESSENTIAL CYSTEINE De | 4e-17 | ||
| 1c0n_A | 406 | Csdb Protein, Nifs Homologue Length = 406 | 2e-14 | ||
| 1c0n_A | 406 | Csdb Protein, Nifs Homologue Length = 406 | 9e-14 | ||
| 1i29_A | 406 | Crystal Structure Of Csdb Complexed With L-Propargy | 5e-14 | ||
| 1i29_A | 406 | Crystal Structure Of Csdb Complexed With L-Propargy | 3e-13 | ||
| 1jf9_A | 408 | Crystal Structure Of Selenocysteine Lyase Length = | 5e-14 | ||
| 1jf9_A | 408 | Crystal Structure Of Selenocysteine Lyase Length = | 3e-13 | ||
| 1kmj_A | 406 | E. Coli NifsCSDB PROTEIN AT 2.0A WITH THE CYSTEINE | 5e-14 | ||
| 1kmj_A | 406 | E. Coli NifsCSDB PROTEIN AT 2.0A WITH THE CYSTEINE | 3e-13 | ||
| 1xjs_A | 147 | Solution Structure Of Iron-Sulfur Cluster Assembly | 2e-11 | ||
| 1xjs_A | 147 | Solution Structure Of Iron-Sulfur Cluster Assembly | 2e-11 | ||
| 1r94_A | 118 | Crystal Structure Of Isca (mercury Derivative) Leng | 2e-11 | ||
| 1r94_A | 118 | Crystal Structure Of Isca (mercury Derivative) Leng | 2e-11 | ||
| 1s98_A | 107 | E.Coli Isca Crystal Structure To 2.3 A Length = 107 | 3e-11 | ||
| 1s98_A | 107 | E.Coli Isca Crystal Structure To 2.3 A Length = 107 | 3e-11 | ||
| 2wlb_A | 103 | Adrenodoxin-Like Ferredoxin Etp1fd(516-618) Of Schi | 3e-11 | ||
| 1mw7_A | 240 | X-Ray Structure Of Y162_helpy Northeast Structural | 6e-11 | ||
| 2qq4_A | 138 | Crystal Structure Of Iron-Sulfur Cluster Biosynthes | 1e-10 | ||
| 2qq4_A | 138 | Crystal Structure Of Iron-Sulfur Cluster Biosynthes | 1e-10 | ||
| 3hui_A | 126 | Crystal Structure Of The Mutant A105r Of [2fe-2s] F | 4e-08 | ||
| 3ah7_A | 113 | Crystal Structure Of The Isc-Like [2fe-2s] Ferredox | 4e-08 | ||
| 1fpo_A | 171 | Hsc20 (Hscb), A J-Type Co-Chaperone From E. Coli Le | 2e-07 | ||
| 1fpo_A | 171 | Hsc20 (Hscb), A J-Type Co-Chaperone From E. Coli Le | 2e-07 | ||
| 2bt6_A | 108 | Ru(Bpy)2(Mbpy)-Modified Bovine Adrenodoxin Length = | 5e-07 | ||
| 1ayf_A | 105 | Bovine Adrenodoxin (oxidized) Length = 105 | 5e-07 | ||
| 2jqr_B | 105 | Solution Model Of Crosslinked Complex Of Cytochrome | 6e-07 | ||
| 1cje_A | 127 | Adrenodoxin From Bovine Length = 127 | 7e-07 | ||
| 1l6u_A | 128 | Nmr Structure Of Oxidized Adrenodoxin Length = 128 | 7e-07 | ||
| 1e6e_B | 128 | Adrenodoxin ReductaseADRENODOXIN COMPLEX OF MITOCHO | 7e-07 | ||
| 1l6v_A | 128 | Structure Of Reduced Bovine Adrenodoxin Length = 12 | 7e-07 | ||
| 3na0_C | 68 | Crystal Structure Of Human Cyp11a1 In Complex With | 1e-06 | ||
| 3n9y_C | 114 | Crystal Structure Of Human Cyp11a1 In Complex With | 1e-06 | ||
| 3n9z_C | 123 | Crystal Structure Of Human Cyp11a1 In Complex With | 1e-06 | ||
| 3p1m_A | 132 | Crystal Structure Of Human Ferredoxin-1 (Fdx1) In C | 1e-06 | ||
| 2y5c_A | 109 | Structure Of Human Ferredoxin 2 (Fdx2)in Complex Wi | 2e-06 | ||
| 1oqq_A | 106 | Crystal Structure Of C73sC85S MUTANT OF PUTIDAREDOX | 4e-06 | ||
| 1su0_B | 159 | Crystal Structure Of A Hypothetical Protein At 2.3 | 8e-06 | ||
| 1su0_B | 159 | Crystal Structure Of A Hypothetical Protein At 2.3 | 8e-06 | ||
| 1gpx_A | 106 | C85s Gapdx, Nmr, 20 Structures Length = 106 | 8e-06 | ||
| 1oqr_A | 106 | Crystal Structure Of C73s Mutant Of Putidaredoxin, | 1e-05 | ||
| 1r7s_A | 106 | Putidaredoxin (Fe2s2 Ferredoxin), C73g Mutant Lengt | 2e-05 | ||
| 2d2a_A | 145 | Crystal Structure Of Escherichia Coli Sufa Involved | 3e-05 | ||
| 2d2a_A | 145 | Crystal Structure Of Escherichia Coli Sufa Involved | 3e-05 | ||
| 1put_A | 106 | An Nmr-Derived Model For The Solution Structure Of | 3e-05 | ||
| 1pdx_A | 106 | Putidaredoxin Length = 106 | 3e-05 | ||
| 3cai_A | 406 | Crystal Structure Of Mycobacterium Tuberculosis Rv3 | 8e-05 | ||
| 3cai_A | 406 | Crystal Structure Of Mycobacterium Tuberculosis Rv3 | 8e-05 | ||
| 1elq_A | 390 | Crystal Structure Of The Cystine C-S Lyase C-Des Le | 1e-04 | ||
| 1elq_A | 390 | Crystal Structure Of The Cystine C-S Lyase C-Des Le | 1e-04 | ||
| 3bvo_A | 207 | Crystal Structure Of Human Co-Chaperone Protein Hsc | 3e-04 | ||
| 3bvo_A | 207 | Crystal Structure Of Human Co-Chaperone Protein Hsc | 3e-04 | ||
| 1n2t_A | 386 | C-Des Mutant K223a With Gly Covalenty Linked To The | 6e-04 | ||
| 1n2t_A | 386 | C-Des Mutant K223a With Gly Covalenty Linked To The | 6e-04 |
| >pdb|1P3W|B Chain B, X-Ray Crystal Structure Of E. Coli Iscs Length = 404 | Back alignment and structure |
|
| >pdb|1P3W|B Chain B, X-Ray Crystal Structure Of E. Coli Iscs Length = 404 | Back alignment and structure |
|
| >pdb|3LVJ|A Chain A, Crystal Structure Of E.Coli Iscs-Tusa Complex (Form 1) Length = 423 | Back alignment and structure |
|
| >pdb|3LVJ|A Chain A, Crystal Structure Of E.Coli Iscs-Tusa Complex (Form 1) Length = 423 | Back alignment and structure |
|
| >pdb|2KHO|A Chain A, Nmr-Rdc XRAY STRUCTURE OF E. COLI HSP70 (DNAK) CHAPERONE (1-605) Complexed With Adp And Substrate Length = 605 | Back alignment and structure |
|
| >pdb|2KHO|A Chain A, Nmr-Rdc XRAY STRUCTURE OF E. COLI HSP70 (DNAK) CHAPERONE (1-605) Complexed With Adp And Substrate Length = 605 | Back alignment and structure |
|
| >pdb|4B9Q|A Chain A, Open Conformation Of Atp-Bound Hsp70 Homolog Dnak Length = 605 | Back alignment and structure |
|
| >pdb|4B9Q|A Chain A, Open Conformation Of Atp-Bound Hsp70 Homolog Dnak Length = 605 | Back alignment and structure |
|
| >pdb|2V7Y|A Chain A, Crystal Structure Of The Molecular Chaperone Dnak From Geobacillus Kaustophilus Hta426 In Post-Atp Hydrolysis State Length = 509 | Back alignment and structure |
|
| >pdb|2V7Y|A Chain A, Crystal Structure Of The Molecular Chaperone Dnak From Geobacillus Kaustophilus Hta426 In Post-Atp Hydrolysis State Length = 509 | Back alignment and structure |
|
| >pdb|3C7N|B Chain B, Structure Of The Hsp110:hsc70 Nucleotide Exchange Complex Length = 554 | Back alignment and structure |
|
| >pdb|3C7N|B Chain B, Structure Of The Hsp110:hsc70 Nucleotide Exchange Complex Length = 554 | Back alignment and structure |
|
| >pdb|1YUW|A Chain A, Crystal Structure Of Bovine Hsc70(Aa1-554)e213aD214A MUTANT Length = 554 | Back alignment and structure |
|
| >pdb|1YUW|A Chain A, Crystal Structure Of Bovine Hsc70(Aa1-554)e213aD214A MUTANT Length = 554 | Back alignment and structure |
|
| >pdb|2V7Z|A Chain A, Crystal Structure Of The 70-Kda Heat Shock Cognate Protein From Rattus Norvegicus In Post-Atp Hydrolysis State Length = 543 | Back alignment and structure |
|
| >pdb|2V7Z|A Chain A, Crystal Structure Of The 70-Kda Heat Shock Cognate Protein From Rattus Norvegicus In Post-Atp Hydrolysis State Length = 543 | Back alignment and structure |
|
| >pdb|4EB5|A Chain A, A. Fulgidus Iscs-Iscu Complex Structure Length = 382 | Back alignment and structure |
|
| >pdb|4EB5|A Chain A, A. Fulgidus Iscs-Iscu Complex Structure Length = 382 | Back alignment and structure |
|
| >pdb|3VAX|A Chain A, Crytal Structure Of Dnda From Streptomyces Lividans Length = 400 | Back alignment and structure |
|
| >pdb|3VAX|A Chain A, Crytal Structure Of Dnda From Streptomyces Lividans Length = 400 | Back alignment and structure |
|
| >pdb|1ECX|A Chain A, Nifs-Like Protein Length = 384 | Back alignment and structure |
|
| >pdb|1ECX|A Chain A, Nifs-Like Protein Length = 384 | Back alignment and structure |
|
| >pdb|1DKG|D Chain D, Crystal Structure Of The Nucleotide Exchange Factor Grpe Bound To The Atpase Domain Of The Molecular Chaperone Dnak Length = 383 | Back alignment and structure |
|
| >pdb|1DKG|D Chain D, Crystal Structure Of The Nucleotide Exchange Factor Grpe Bound To The Atpase Domain Of The Molecular Chaperone Dnak Length = 383 | Back alignment and structure |
|
| >pdb|3QFP|A Chain A, Crystal Structure Of Yeast Hsp70 (BipKAR2) ATPASE DOMAIN Length = 390 | Back alignment and structure |
|
| >pdb|3QFP|A Chain A, Crystal Structure Of Yeast Hsp70 (BipKAR2) ATPASE DOMAIN Length = 390 | Back alignment and structure |
|
| >pdb|1EG5|A Chain A, Nifs-like Protein Length = 384 | Back alignment and structure |
|
| >pdb|1EG5|A Chain A, Nifs-like Protein Length = 384 | Back alignment and structure |
|
| >pdb|3IUC|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 5 (BipGRP78) ATPASE DOMAIN IN COMPLEX WITH ADP Length = 408 | Back alignment and structure |
|
| >pdb|3IUC|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 5 (BipGRP78) ATPASE DOMAIN IN COMPLEX WITH ADP Length = 408 | Back alignment and structure |
|
| >pdb|3LDL|A Chain A, Crystal Structure Of Human Grp78 (70kda Heat Shock Protein 5 BIP) Atpase Domain In Complex With Atp Length = 384 | Back alignment and structure |
|
| >pdb|3LDL|A Chain A, Crystal Structure Of Human Grp78 (70kda Heat Shock Protein 5 BIP) Atpase Domain In Complex With Atp Length = 384 | Back alignment and structure |
|
| >pdb|1HPM|A Chain A, How Potassium Affects The Activity Of The Molecular Chaperone Hsc70. Ii. Potassium Binds Specifically In The Atpase Active Site Length = 386 | Back alignment and structure |
|
| >pdb|1HPM|A Chain A, How Potassium Affects The Activity Of The Molecular Chaperone Hsc70. Ii. Potassium Binds Specifically In The Atpase Active Site Length = 386 | Back alignment and structure |
|
| >pdb|1BA1|A Chain A, Heat-Shock Cognate 70kd Protein 44kd Atpase N-Terminal Mutant With Cys 17 Replaced By Lys Length = 386 | Back alignment and structure |
|
| >pdb|1BA1|A Chain A, Heat-Shock Cognate 70kd Protein 44kd Atpase N-Terminal Mutant With Cys 17 Replaced By Lys Length = 386 | Back alignment and structure |
|
| >pdb|1NGB|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGB|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1BUP|A Chain A, T13s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 386 | Back alignment and structure |
|
| >pdb|1BUP|A Chain A, T13s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 386 | Back alignment and structure |
|
| >pdb|1ATR|A Chain A, Threonine 204 Of The Chaperone Protein Hsc70 Influences The Structure Of The Active Site But Is Not Essential For Atp Hydrolysis Length = 386 | Back alignment and structure |
|
| >pdb|1ATR|A Chain A, Threonine 204 Of The Chaperone Protein Hsc70 Influences The Structure Of The Active Site But Is Not Essential For Atp Hydrolysis Length = 386 | Back alignment and structure |
|
| >pdb|1NGD|A Chain A, Structural Basis Of The 70-kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGD|A Chain A, Structural Basis Of The 70-kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGF|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGF|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGH|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGH|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1ATS|A Chain A, Threonine 204 Of The Chaperone Protein Hsc70 Influences The Structure Of The Active Site But Is Not Essential For Atp Hydrolysis Length = 386 | Back alignment and structure |
|
| >pdb|1ATS|A Chain A, Threonine 204 Of The Chaperone Protein Hsc70 Influences The Structure Of The Active Site But Is Not Essential For Atp Hydrolysis Length = 386 | Back alignment and structure |
|
| >pdb|1NGA|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGA|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGG|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGG|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGC|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGC|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGE|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGE|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1BA0|A Chain A, Heat-Shock Cognate 70kd Protein 44kd Atpase N-Terminal 1nge 3 Length = 386 | Back alignment and structure |
|
| >pdb|1BA0|A Chain A, Heat-Shock Cognate 70kd Protein 44kd Atpase N-Terminal 1nge 3 Length = 386 | Back alignment and structure |
|
| >pdb|2QWN|A Chain A, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of Bovine Hsc70 (1-386aa)r171c And Bovine Auxilin (810-910aa)d876c In The AdpPi State Length = 394 | Back alignment and structure |
|
| >pdb|2QWN|A Chain A, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of Bovine Hsc70 (1-386aa)r171c And Bovine Auxilin (810-910aa)d876c In The AdpPi State Length = 394 | Back alignment and structure |
|
| >pdb|3I33|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 2 (Hsp70-2) Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 404 | Back alignment and structure |
|
| >pdb|3I33|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 2 (Hsp70-2) Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 404 | Back alignment and structure |
|
| >pdb|3FE1|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 6 (Hsp70b') Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 403 | Back alignment and structure |
|
| >pdb|3FE1|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 6 (Hsp70b') Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 403 | Back alignment and structure |
|
| >pdb|3CQX|A Chain A, Chaperone Complex Length = 386 | Back alignment and structure |
|
| >pdb|3CQX|A Chain A, Chaperone Complex Length = 386 | Back alignment and structure |
|
| >pdb|1HX1|A Chain A, Crystal Structure Of A Bag Domain In Complex With The Hsc70 Atpase Domain Length = 400 | Back alignment and structure |
|
| >pdb|1HX1|A Chain A, Crystal Structure Of A Bag Domain In Complex With The Hsc70 Atpase Domain Length = 400 | Back alignment and structure |
|
| >pdb|3FZF|A Chain A, Crystal Structure Of Hsc70BAG1 IN COMPLEX WITH ATP Length = 381 | Back alignment and structure |
|
| >pdb|3FZF|A Chain A, Crystal Structure Of Hsc70BAG1 IN COMPLEX WITH ATP Length = 381 | Back alignment and structure |
|
| >pdb|1KAZ|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71e Mutant Length = 381 | Back alignment and structure |
|
| >pdb|1KAZ|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71e Mutant Length = 381 | Back alignment and structure |
|
| >pdb|3GDQ|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 1-Like Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 408 | Back alignment and structure |
|
| >pdb|3GDQ|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 1-Like Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 408 | Back alignment and structure |
|
| >pdb|1KAY|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71a Mutant Length = 381 | Back alignment and structure |
|
| >pdb|1KAY|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71a Mutant Length = 381 | Back alignment and structure |
|
| >pdb|4FSV|A Chain A, Crystal Structure Of A Heat Shock 70kda Protein 2 (Hspa2) From Homo Sapiens At 1.80 A Resolution Length = 387 | Back alignment and structure |
|
| >pdb|4FSV|A Chain A, Crystal Structure Of A Heat Shock 70kda Protein 2 (Hspa2) From Homo Sapiens At 1.80 A Resolution Length = 387 | Back alignment and structure |
|
| >pdb|2BUP|A Chain A, T13g Mutant Of The Atpase Fragment Of Bovine Hsc70 Length = 381 | Back alignment and structure |
|
| >pdb|2BUP|A Chain A, T13g Mutant Of The Atpase Fragment Of Bovine Hsc70 Length = 381 | Back alignment and structure |
|
| >pdb|1KAX|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71m Mutant Length = 381 | Back alignment and structure |
|
| >pdb|1KAX|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71m Mutant Length = 381 | Back alignment and structure |
|
| >pdb|1QQN|A Chain A, D206s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 378 | Back alignment and structure |
|
| >pdb|1QQN|A Chain A, D206s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 378 | Back alignment and structure |
|
| >pdb|1QQM|A Chain A, D199s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 378 | Back alignment and structure |
|
| >pdb|1QQM|A Chain A, D199s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 378 | Back alignment and structure |
|
| >pdb|3GL1|A Chain A, Crystal Structure Of Atpase Domain Of Ssb1 Chaperone, A Member Of The Hsp70 Family, From Saccharomyces Cerevisiae Length = 387 | Back alignment and structure |
|
| >pdb|3GL1|A Chain A, Crystal Structure Of Atpase Domain Of Ssb1 Chaperone, A Member Of The Hsp70 Family, From Saccharomyces Cerevisiae Length = 387 | Back alignment and structure |
|
| >pdb|1QQO|A Chain A, E175s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 378 | Back alignment and structure |
|
| >pdb|1QQO|A Chain A, E175s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 378 | Back alignment and structure |
|
| >pdb|3A8Y|A Chain A, Crystal Structure Of The Complex Between The Bag5 Bd5 And Hsp70 Nbd Length = 392 | Back alignment and structure |
|
| >pdb|3A8Y|A Chain A, Crystal Structure Of The Complex Between The Bag5 Bd5 And Hsp70 Nbd Length = 392 | Back alignment and structure |
|
| >pdb|3JXU|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 1a (Hsp70-1) Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 409 | Back alignment and structure |
|
| >pdb|3JXU|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 1a (Hsp70-1) Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 409 | Back alignment and structure |
|
| >pdb|2E8A|A Chain A, Crystal Structure Of The Human Hsp70 Atpase Domain In Complex With Amp-Pnp Length = 391 | Back alignment and structure |
|
| >pdb|2E8A|A Chain A, Crystal Structure Of The Human Hsp70 Atpase Domain In Complex With Amp-Pnp Length = 391 | Back alignment and structure |
|
| >pdb|2E88|A Chain A, Crystal Structure Of The Human Hsp70 Atpase Domain In The Apo Form Length = 391 | Back alignment and structure |
|
| >pdb|2E88|A Chain A, Crystal Structure Of The Human Hsp70 Atpase Domain In The Apo Form Length = 391 | Back alignment and structure |
|
| >pdb|3D2F|B Chain B, Crystal Structure Of A Complex Of Sse1p And Hsp70 Length = 382 | Back alignment and structure |
|
| >pdb|3D2F|B Chain B, Crystal Structure Of A Complex Of Sse1p And Hsp70 Length = 382 | Back alignment and structure |
|
| >pdb|1S3X|A Chain A, The Crystal Structure Of The Human Hsp70 Atpase Domain Length = 382 | Back alignment and structure |
|
| >pdb|1S3X|A Chain A, The Crystal Structure Of The Human Hsp70 Atpase Domain Length = 382 | Back alignment and structure |
|
| >pdb|1HJO|A Chain A, Atpase Domain Of Human Heat Shock 70kda Protein 1 Length = 380 | Back alignment and structure |
|
| >pdb|1HJO|A Chain A, Atpase Domain Of Human Heat Shock 70kda Protein 1 Length = 380 | Back alignment and structure |
|
| >pdb|3KVG|A Chain A, Crystal Structure Of The N-Terminal Domain Of Hsp70 (Cgd2_20) From Cryptosporidium Parvum In Complex With Amppnp Length = 400 | Back alignment and structure |
|
| >pdb|3KVG|A Chain A, Crystal Structure Of The N-Terminal Domain Of Hsp70 (Cgd2_20) From Cryptosporidium Parvum In Complex With Amppnp Length = 400 | Back alignment and structure |
|
| >pdb|3D2E|B Chain B, Crystal Structure Of A Complex Of Sse1p And Hsp70, Selenomethionine- Labeled Crystals Length = 382 | Back alignment and structure |
|
| >pdb|3D2E|B Chain B, Crystal Structure Of A Complex Of Sse1p And Hsp70, Selenomethionine- Labeled Crystals Length = 382 | Back alignment and structure |
|
| >pdb|3A9X|A Chain A, Crystal Structure Of Rat Selenocysteine Lyase Length = 432 | Back alignment and structure |
|
| >pdb|3A9X|A Chain A, Crystal Structure Of Rat Selenocysteine Lyase Length = 432 | Back alignment and structure |
|
| >pdb|3GZC|A Chain A, Structure Of Human Selenocysteine Lyase Length = 440 | Back alignment and structure |
|
| >pdb|3GZC|A Chain A, Structure Of Human Selenocysteine Lyase Length = 440 | Back alignment and structure |
|
| >pdb|2L4X|A Chain A, Solution Structure Of Apo-Iscu(Wt) Length = 128 | Back alignment and structure |
|
| >pdb|2L4X|A Chain A, Solution Structure Of Apo-Iscu(Wt) Length = 128 | Back alignment and structure |
|
| >pdb|3GZD|A Chain A, Human Selenocysteine Lyase, P1 Crystal Form Length = 440 | Back alignment and structure |
|
| >pdb|3GZD|A Chain A, Human Selenocysteine Lyase, P1 Crystal Form Length = 440 | Back alignment and structure |
|
| >pdb|3LVL|A Chain A, Crystal Structure Of E.Coli Iscs-Iscu Complex Length = 129 | Back alignment and structure |
|
| >pdb|3LVL|A Chain A, Crystal Structure Of E.Coli Iscs-Iscu Complex Length = 129 | Back alignment and structure |
|
| >pdb|2KQK|A Chain A, Solution Structure Of Apo-Iscu(D39a) Length = 128 | Back alignment and structure |
|
| >pdb|2KQK|A Chain A, Solution Structure Of Apo-Iscu(D39a) Length = 128 | Back alignment and structure |
|
| >pdb|1Q48|A Chain A, Solution Nmr Structure Of The Haemophilus Influenzae Iron- Sulfur Cluster Assembly Protein U (Iscu) With Zinc Bound At The Active Site. Northeast Structural Genomics Consortium Target Ir24. This Protein Is Not Apo, It Is A Model Without Zinc Binding Constraints. Length = 134 | Back alignment and structure |
|
| >pdb|1Q48|A Chain A, Solution Nmr Structure Of The Haemophilus Influenzae Iron- Sulfur Cluster Assembly Protein U (Iscu) With Zinc Bound At The Active Site. Northeast Structural Genomics Consortium Target Ir24. This Protein Is Not Apo, It Is A Model Without Zinc Binding Constraints. Length = 134 | Back alignment and structure |
|
| >pdb|1U00|A Chain A, Hsca Substrate Binding Domain Complexed With The Iscu Recognition Peptide Elppvkihc Length = 227 | Back alignment and structure |
|
| >pdb|1U00|A Chain A, Hsca Substrate Binding Domain Complexed With The Iscu Recognition Peptide Elppvkihc Length = 227 | Back alignment and structure |
|
| >pdb|1WFZ|A Chain A, Solution Structure Of Iron-Sulfur Cluster Protein U (Iscu) Length = 130 | Back alignment and structure |
|
| >pdb|1WFZ|A Chain A, Solution Structure Of Iron-Sulfur Cluster Protein U (Iscu) Length = 130 | Back alignment and structure |
|
| >pdb|4IXO|A Chain A, X-ray Structure Of Nifs-like Protein From Rickettsia Africae Esf-5 Length = 380 | Back alignment and structure |
|
| >pdb|4IXO|A Chain A, X-ray Structure Of Nifs-like Protein From Rickettsia Africae Esf-5 Length = 380 | Back alignment and structure |
|
| >pdb|1KON|A Chain A, Crystal Structure Of E.Coli Yebc Length = 249 | Back alignment and structure |
|
| >pdb|3C7N|A Chain A, Structure Of The Hsp110:hsc70 Nucleotide Exchange Complex Length = 668 | Back alignment and structure |
|
| >pdb|3C7N|A Chain A, Structure Of The Hsp110:hsc70 Nucleotide Exchange Complex Length = 668 | Back alignment and structure |
|
| >pdb|2QXL|A Chain A, Crystal Structure Analysis Of Sse1, A Yeast Hsp110 Length = 658 | Back alignment and structure |
|
| >pdb|2QXL|A Chain A, Crystal Structure Analysis Of Sse1, A Yeast Hsp110 Length = 658 | Back alignment and structure |
|
| >pdb|3D2F|A Chain A, Crystal Structure Of A Complex Of Sse1p And Hsp70 Length = 675 | Back alignment and structure |
|
| >pdb|3D2F|A Chain A, Crystal Structure Of A Complex Of Sse1p And Hsp70 Length = 675 | Back alignment and structure |
|
| >pdb|4F3Q|A Chain A, Structure Of A Yebc Family Protein (Cbu_1566) From Coxiella Burnetii Length = 247 | Back alignment and structure |
|
| >pdb|3D2E|A Chain A, Crystal Structure Of A Complex Of Sse1p And Hsp70, Selenomethionine- Labeled Crystals Length = 675 | Back alignment and structure |
|
| >pdb|3D2E|A Chain A, Crystal Structure Of A Complex Of Sse1p And Hsp70, Selenomethionine- Labeled Crystals Length = 675 | Back alignment and structure |
|
| >pdb|1DKY|A Chain A, The Substrate Binding Domain Of Dnak In Complex With A Substrate Peptide, Determined From Type 2 Native Crystals Length = 219 | Back alignment and structure |
|
| >pdb|1DKY|A Chain A, The Substrate Binding Domain Of Dnak In Complex With A Substrate Peptide, Determined From Type 2 Native Crystals Length = 219 | Back alignment and structure |
|
| >pdb|1BPR|A Chain A, Nmr Structure Of The Substrate Binding Domain Of Dnak, Minimized Average Structure Length = 191 | Back alignment and structure |
|
| >pdb|1BPR|A Chain A, Nmr Structure Of The Substrate Binding Domain Of Dnak, Minimized Average Structure Length = 191 | Back alignment and structure |
|
| >pdb|3DPO|A Chain A, Crystal Structure Of The Substrate Binding Domain Of E. Coli Dnak In Complex With A Short Pyrrhocoricin-Derived Inhibitor Peptide Length = 219 | Back alignment and structure |
|
| >pdb|3DPO|A Chain A, Crystal Structure Of The Substrate Binding Domain Of E. Coli Dnak In Complex With A Short Pyrrhocoricin-Derived Inhibitor Peptide Length = 219 | Back alignment and structure |
|
| >pdb|1DKX|A Chain A, The Substrate Binding Domain Of Dnak In Complex With A Substrate Peptide, Determined From Type 1 Selenomethionyl Crystals Length = 219 | Back alignment and structure |
|
| >pdb|1DKX|A Chain A, The Substrate Binding Domain Of Dnak In Complex With A Substrate Peptide, Determined From Type 1 Selenomethionyl Crystals Length = 219 | Back alignment and structure |
|
| >pdb|1CKR|A Chain A, High Resolution Solution Structure Of The Heat Shock Cognate-70 Kd Substrate Binding Domain Obtained By Multidimensional Nmr Techniques Length = 159 | Back alignment and structure |
|
| >pdb|1CKR|A Chain A, High Resolution Solution Structure Of The Heat Shock Cognate-70 Kd Substrate Binding Domain Obtained By Multidimensional Nmr Techniques Length = 159 | Back alignment and structure |
|
| >pdb|1LFP|A Chain A, Crystal Structure Of A Conserved Hypothetical Protein Aq1575 From Aquifex Aeolicus Length = 249 | Back alignment and structure |
|
| >pdb|3DQG|A Chain A, Peptide-Binding Domain Of Heat Shock 70 Kda Protein F, Mitochondrial Precursor, From Caenorhabditis Elegans. Length = 151 | Back alignment and structure |
|
| >pdb|3DQG|A Chain A, Peptide-Binding Domain Of Heat Shock 70 Kda Protein F, Mitochondrial Precursor, From Caenorhabditis Elegans. Length = 151 | Back alignment and structure |
|
| >pdb|3N8E|A Chain A, Substrate Binding Domain Of The Human Heat Shock 70kda Prote (Mortalin) Length = 182 | Back alignment and structure |
|
| >pdb|3N8E|A Chain A, Substrate Binding Domain Of The Human Heat Shock 70kda Prote (Mortalin) Length = 182 | Back alignment and structure |
|
| >pdb|1DG4|A Chain A, Nmr Structure Of The Substrate Binding Domain Of Dnak In The Apo Form Length = 115 | Back alignment and structure |
|
| >pdb|1DG4|A Chain A, Nmr Structure Of The Substrate Binding Domain Of Dnak In The Apo Form Length = 115 | Back alignment and structure |
|
| >pdb|1I7H|A Chain A, Crystal Sturcuture Of Fdx Length = 111 | Back alignment and structure |
|
| >pdb|4GNI|A Chain A, Structure Of The Ssz1 Atpase Bound To Atp And Magnesium Length = 409 | Back alignment and structure |
|
| >pdb|4GNI|A Chain A, Structure Of The Ssz1 Atpase Bound To Atp And Magnesium Length = 409 | Back alignment and structure |
|
| >pdb|1Q5L|A Chain A, Nmr Structure Of The Substrate Binding Domain Of Dnak Bound To The Peptide Nrllltg Length = 135 | Back alignment and structure |
|
| >pdb|1Q5L|A Chain A, Nmr Structure Of The Substrate Binding Domain Of Dnak Bound To The Peptide Nrllltg Length = 135 | Back alignment and structure |
|
| >pdb|2Z7E|A Chain A, Crystal Structure Of Aquifex Aeolicus Iscu With Bound [2fe- 2s] Cluster Length = 157 | Back alignment and structure |
|
| >pdb|2Z7E|A Chain A, Crystal Structure Of Aquifex Aeolicus Iscu With Bound [2fe- 2s] Cluster Length = 157 | Back alignment and structure |
|
| >pdb|3DOB|A Chain A, Peptide-Binding Domain Of Heat Shock 70 Kda Protein F44e5.5 From C.Elegans. Length = 152 | Back alignment and structure |
|
| >pdb|3DOB|A Chain A, Peptide-Binding Domain Of Heat Shock 70 Kda Protein F44e5.5 From C.Elegans. Length = 152 | Back alignment and structure |
|
| >pdb|2OP6|A Chain A, Peptide-Binding Domain Of Heat Shock 70 Kda Protein D Precursor From C.Elegans Length = 152 | Back alignment and structure |
|
| >pdb|2OP6|A Chain A, Peptide-Binding Domain Of Heat Shock 70 Kda Protein D Precursor From C.Elegans Length = 152 | Back alignment and structure |
|
| >pdb|4EB5|C Chain C, A. Fulgidus Iscs-Iscu Complex Structure Length = 153 | Back alignment and structure |
|
| >pdb|4EB5|C Chain C, A. Fulgidus Iscs-Iscu Complex Structure Length = 153 | Back alignment and structure |
|
| >pdb|3H0X|A Chain A, Crystal Structure Of Peptide-Binding Domain Of Kar2 Protein From Saccharomyces Cerevisiae Length = 152 | Back alignment and structure |
|
| >pdb|3H0X|A Chain A, Crystal Structure Of Peptide-Binding Domain Of Kar2 Protein From Saccharomyces Cerevisiae Length = 152 | Back alignment and structure |
|
| >pdb|1XQS|C Chain C, Crystal Structure Of The Hspbp1 Core Domain Complexed With The Fragment Of Hsp70 Atpase Domain Length = 191 | Back alignment and structure |
|
| >pdb|1XQS|C Chain C, Crystal Structure Of The Hspbp1 Core Domain Complexed With The Fragment Of Hsp70 Atpase Domain Length = 191 | Back alignment and structure |
|
| >pdb|1T3I|A Chain A, Structure Of Slr0077SUFS, THE ESSENTIAL CYSTEINE Desulfurase From Synechocystis Pcc 6803 Length = 420 | Back alignment and structure |
|
| >pdb|1C0N|A Chain A, Csdb Protein, Nifs Homologue Length = 406 | Back alignment and structure |
|
| >pdb|1C0N|A Chain A, Csdb Protein, Nifs Homologue Length = 406 | Back alignment and structure |
|
| >pdb|1I29|A Chain A, Crystal Structure Of Csdb Complexed With L-Propargylglycine Length = 406 | Back alignment and structure |
|
| >pdb|1I29|A Chain A, Crystal Structure Of Csdb Complexed With L-Propargylglycine Length = 406 | Back alignment and structure |
|
| >pdb|1JF9|A Chain A, Crystal Structure Of Selenocysteine Lyase Length = 408 | Back alignment and structure |
|
| >pdb|1JF9|A Chain A, Crystal Structure Of Selenocysteine Lyase Length = 408 | Back alignment and structure |
|
| >pdb|1KMJ|A Chain A, E. Coli NifsCSDB PROTEIN AT 2.0A WITH THE CYSTEINE PERSULFIDE Intermediate (Residue Css). Length = 406 | Back alignment and structure |
|
| >pdb|1KMJ|A Chain A, E. Coli NifsCSDB PROTEIN AT 2.0A WITH THE CYSTEINE PERSULFIDE Intermediate (Residue Css). Length = 406 | Back alignment and structure |
|
| >pdb|1XJS|A Chain A, Solution Structure Of Iron-Sulfur Cluster Assembly Protein Iscu From Bacillus Subtilis, With Zinc Bound At The Active Site. Northeast Structural Genomics Consortium Target Sr17 Length = 147 | Back alignment and structure |
|
| >pdb|1XJS|A Chain A, Solution Structure Of Iron-Sulfur Cluster Assembly Protein Iscu From Bacillus Subtilis, With Zinc Bound At The Active Site. Northeast Structural Genomics Consortium Target Sr17 Length = 147 | Back alignment and structure |
|
| >pdb|1R94|A Chain A, Crystal Structure Of Isca (mercury Derivative) Length = 118 | Back alignment and structure |
|
| >pdb|1R94|A Chain A, Crystal Structure Of Isca (mercury Derivative) Length = 118 | Back alignment and structure |
|
| >pdb|1S98|A Chain A, E.Coli Isca Crystal Structure To 2.3 A Length = 107 | Back alignment and structure |
|
| >pdb|1S98|A Chain A, E.Coli Isca Crystal Structure To 2.3 A Length = 107 | Back alignment and structure |
|
| >pdb|2WLB|A Chain A, Adrenodoxin-Like Ferredoxin Etp1fd(516-618) Of Schizosaccharomyces Pombe Mitochondria Length = 103 | Back alignment and structure |
|
| >pdb|1MW7|A Chain A, X-Ray Structure Of Y162_helpy Northeast Structural Genomics Consortium Target Pr6 Length = 240 | Back alignment and structure |
|
| >pdb|2QQ4|A Chain A, Crystal Structure Of Iron-Sulfur Cluster Biosynthesis Protein Iscu (Ttha1736) From Thermus Thermophilus Hb8 Length = 138 | Back alignment and structure |
|
| >pdb|2QQ4|A Chain A, Crystal Structure Of Iron-Sulfur Cluster Biosynthesis Protein Iscu (Ttha1736) From Thermus Thermophilus Hb8 Length = 138 | Back alignment and structure |
|
| >pdb|3HUI|A Chain A, Crystal Structure Of The Mutant A105r Of [2fe-2s] Ferredoxin In The Class I Cyp199a2 System From Rhodopseudomonas Palustris Length = 126 | Back alignment and structure |
|
| >pdb|3AH7|A Chain A, Crystal Structure Of The Isc-Like [2fe-2s] Ferredoxin (Fdxb) From Pseudomonas Putida Jcm 20004 Length = 113 | Back alignment and structure |
|
| >pdb|1FPO|A Chain A, Hsc20 (Hscb), A J-Type Co-Chaperone From E. Coli Length = 171 | Back alignment and structure |
|
| >pdb|1FPO|A Chain A, Hsc20 (Hscb), A J-Type Co-Chaperone From E. Coli Length = 171 | Back alignment and structure |
|
| >pdb|2BT6|A Chain A, Ru(Bpy)2(Mbpy)-Modified Bovine Adrenodoxin Length = 108 | Back alignment and structure |
|
| >pdb|1AYF|A Chain A, Bovine Adrenodoxin (oxidized) Length = 105 | Back alignment and structure |
|
| >pdb|2JQR|B Chain B, Solution Model Of Crosslinked Complex Of Cytochrome C And Adrenodoxin Length = 105 | Back alignment and structure |
|
| >pdb|1CJE|A Chain A, Adrenodoxin From Bovine Length = 127 | Back alignment and structure |
|
| >pdb|1L6U|A Chain A, Nmr Structure Of Oxidized Adrenodoxin Length = 128 | Back alignment and structure |
|
| >pdb|1E6E|B Chain B, Adrenodoxin ReductaseADRENODOXIN COMPLEX OF MITOCHONDRIAL P450 Systems Length = 128 | Back alignment and structure |
|
| >pdb|1L6V|A Chain A, Structure Of Reduced Bovine Adrenodoxin Length = 128 | Back alignment and structure |
|
| >pdb|3NA0|C Chain C, Crystal Structure Of Human Cyp11a1 In Complex With 20,22- Dihydroxycholesterol Length = 68 | Back alignment and structure |
|
| >pdb|3N9Y|C Chain C, Crystal Structure Of Human Cyp11a1 In Complex With Cholesterol Length = 114 | Back alignment and structure |
|
| >pdb|3N9Z|C Chain C, Crystal Structure Of Human Cyp11a1 In Complex With 22- Hydroxycholesterol Length = 123 | Back alignment and structure |
|
| >pdb|3P1M|A Chain A, Crystal Structure Of Human Ferredoxin-1 (Fdx1) In Complex With Iron- Sulfur Cluster Length = 132 | Back alignment and structure |
|
| >pdb|2Y5C|A Chain A, Structure Of Human Ferredoxin 2 (Fdx2)in Complex With 2fe2s Cluster Length = 109 | Back alignment and structure |
|
| >pdb|1OQQ|A Chain A, Crystal Structure Of C73sC85S MUTANT OF PUTIDAREDOXIN, A [2FE-2s] Ferredoxin From Pseudomonas Putida, At 1.47a Resolution Length = 106 | Back alignment and structure |
|
| >pdb|1SU0|B Chain B, Crystal Structure Of A Hypothetical Protein At 2.3 A Resolution Length = 159 | Back alignment and structure |
|
| >pdb|1SU0|B Chain B, Crystal Structure Of A Hypothetical Protein At 2.3 A Resolution Length = 159 | Back alignment and structure |
|
| >pdb|1GPX|A Chain A, C85s Gapdx, Nmr, 20 Structures Length = 106 | Back alignment and structure |
|
| >pdb|1OQR|A Chain A, Crystal Structure Of C73s Mutant Of Putidaredoxin, A [2fe- 2s] Ferredoxin From Pseudomonas Putida, At 1.65a Resolution Length = 106 | Back alignment and structure |
|
| >pdb|1R7S|A Chain A, Putidaredoxin (Fe2s2 Ferredoxin), C73g Mutant Length = 106 | Back alignment and structure |
|
| >pdb|2D2A|A Chain A, Crystal Structure Of Escherichia Coli Sufa Involved In Biosynthesis Of Iron-Sulfur Clusters Length = 145 | Back alignment and structure |
|
| >pdb|2D2A|A Chain A, Crystal Structure Of Escherichia Coli Sufa Involved In Biosynthesis Of Iron-Sulfur Clusters Length = 145 | Back alignment and structure |
|
| >pdb|1PUT|A Chain A, An Nmr-Derived Model For The Solution Structure Of Oxidized Putidaredoxin, A 2fe, 2-S Ferredoxin From Pseudomonas Length = 106 | Back alignment and structure |
|
| >pdb|1PDX|A Chain A, Putidaredoxin Length = 106 | Back alignment and structure |
|
| >pdb|3CAI|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Rv3778c Protein Length = 406 | Back alignment and structure |
|
| >pdb|3CAI|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Rv3778c Protein Length = 406 | Back alignment and structure |
|
| >pdb|1ELQ|A Chain A, Crystal Structure Of The Cystine C-S Lyase C-Des Length = 390 | Back alignment and structure |
|
| >pdb|1ELQ|A Chain A, Crystal Structure Of The Cystine C-S Lyase C-Des Length = 390 | Back alignment and structure |
|
| >pdb|3BVO|A Chain A, Crystal Structure Of Human Co-Chaperone Protein Hscb Length = 207 | Back alignment and structure |
|
| >pdb|3BVO|A Chain A, Crystal Structure Of Human Co-Chaperone Protein Hscb Length = 207 | Back alignment and structure |
|
| >pdb|1N2T|A Chain A, C-Des Mutant K223a With Gly Covalenty Linked To The Plp-Cofactor Length = 386 | Back alignment and structure |
|
| >pdb|1N2T|A Chain A, C-Des Mutant K223a With Gly Covalenty Linked To The Plp-Cofactor Length = 386 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B* Length = 423 | Back alignment and structure |
|---|
Score = 721 bits (1863), Expect = 0.0
Identities = 245/369 (66%), Positives = 317/369 (85%), Gaps = 3/369 (0%)
Query: 1 MDYSATTPIDPRVVDKMIPYLRVQ--FGNPASRNHIYGWTAEKAIEKARNEVAQLIYADP 58
+DYSATTP+DPRV +KM+ ++ + FGNPASR+H +GW AE+A++ ARN++A L+ ADP
Sbjct: 26 LDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADP 85
Query: 59 REIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP 118
REI++TSGATES+NLAIKGAA+FY+K+GKHIIT +TEHK+VLD+ R+LE +GF VTYL P
Sbjct: 86 REIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAP 145
Query: 119 KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVG 178
+ NG+I L +LE + DTILVS+M VNNEIGV+Q I IGE+CR++G+I+H DA Q+VG
Sbjct: 146 QRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVG 205
Query: 179 KIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLAT 238
K+ I++ KVDLMSFS HKIYGPKGIGALY+RR PR RIEAQ+HGGGHE G+RSGTL
Sbjct: 206 KLPIDLSQLKVDLMSFSGHKIYGPKGIGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPV 265
Query: 239 HQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISF 298
HQIVGMGEA+R+A+ EM E++R+ L+ RL+NG+ + IEE+Y+NGD+ + P+ LN+SF
Sbjct: 266 HQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIKD-IEEVYLNGDLEHGAPNILNVSF 324
Query: 299 NFIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKE 358
N++EGESL+MA+KD+AVSSGSACTSASLEPSYVLRALG NDELAHSSIRF++GRFTTE+E
Sbjct: 325 NYVEGESLIMALKDLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEE 384
Query: 359 IDFTIKLLK 367
ID+TI+L++
Sbjct: 385 IDYTIELVR 393
|
| >3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B* Length = 423 | Back alignment and structure |
|---|
Score = 712 bits (1841), Expect = 0.0
Identities = 242/365 (66%), Positives = 313/365 (85%), Gaps = 3/365 (0%)
Query: 1401 ATTPIDPRVVDKMIPYLRVQ--FGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREII 1458
ATTP+DPRV +KM+ ++ + FGNPASR+H +GW AE+A++ ARN++A L+ ADPREI+
Sbjct: 30 ATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIV 89
Query: 1459 WTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNG 1518
+TSGATES+NLAIKGAA+FY+K+GKHIIT +TEHK+VLD+ R+LE +GF VTYL P+ NG
Sbjct: 90 FTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNG 149
Query: 1519 LITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDI 1578
+I L +LE + DTILVS+M VNNEIGV+Q I IGE+CR++G+I+H DA Q+VGK+ I
Sbjct: 150 IIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLPI 209
Query: 1579 NIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIV 1638
++ KVDLMSFS HKIYGPKGIGALY+RR PR RIEAQ+HGGGHE G+RSGTL HQIV
Sbjct: 210 DLSQLKVDLMSFSGHKIYGPKGIGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIV 269
Query: 1639 GMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIE 1698
GMGEA+R+A+ EM E++R+ L+ RL+NG+ + IEE+Y+NGD+ + P+ LN+SFN++E
Sbjct: 270 GMGEAYRIAKEEMATEMERLRGLRNRLWNGIKD-IEEVYLNGDLEHGAPNILNVSFNYVE 328
Query: 1699 GESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFT 1758
GESL+MA+KD+AVSSGSACTSASLEPSYVLRALG NDELAHSSIRF++GRFTTE+EID+T
Sbjct: 329 GESLIMALKDLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYT 388
Query: 1759 IKLLK 1763
I+L++
Sbjct: 389 IELVR 393
|
| >4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A* Length = 382 | Back alignment and structure |
|---|
Score = 688 bits (1777), Expect = 0.0
Identities = 150/369 (40%), Positives = 246/369 (66%), Gaps = 7/369 (1%)
Query: 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
DY++ P+D R+++ M+PY+ FGNP+S H YG+ A +A+++AR +VA+L+
Sbjct: 4 FDYTSAKPVDERILEAMLPYMTESFGNPSSV-HSYGFKAREAVQEAREKVAKLVNGGGGT 62
Query: 61 IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN 120
+++TSGATE+NNLAI G A ++GKHI+ EH SV++ + L+ GF V Y+
Sbjct: 63 VVFTSGATEANNLAIIGYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGK 122
Query: 121 NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKI 180
G + +S +++K+ DTILVSV NNEIG IQP+ EI E+ K H DA +VG+I
Sbjct: 123 YGEVDVSFIDQKLRDDTILVSVQHANNEIGTIQPVEEISEVLAGKAA-LHIDATASVGQI 181
Query: 181 DINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQ 240
+++++ D+++ S++ IYGPKG+GAL+IR+ +++ I GGG E GLRSG+
Sbjct: 182 EVDVEKIGADMLTISSNDIYGPKGVGALWIRK--EAKLQPVILGGGQENGLRSGSENVPS 239
Query: 241 IVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF 300
IVG G+A + +E +EE +R+ L+ R+ + +++ IEE Y+NG R+P+N+N+ F++
Sbjct: 240 IVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLK-IEESYLNGHPEKRLPNNVNVRFSY 298
Query: 301 IEGESLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKE 358
IEGES+++++ I S+GSAC+S +L+PS+VL A G E AH ++ T+GR+ T+++
Sbjct: 299 IEGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDED 358
Query: 359 IDFTIKLLK 367
+D +++L
Sbjct: 359 VDRLLEVLP 367
|
| >4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A* Length = 382 | Back alignment and structure |
|---|
Score = 679 bits (1755), Expect = 0.0
Identities = 148/365 (40%), Positives = 243/365 (66%), Gaps = 7/365 (1%)
Query: 1401 ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWT 1460
+ P+D R+++ M+PY+ FGNP+S H YG+ A +A+++AR +VA+L+ +++T
Sbjct: 8 SAKPVDERILEAMLPYMTESFGNPSSV-HSYGFKAREAVQEAREKVAKLVNGGGGTVVFT 66
Query: 1461 SGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLI 1520
SGATE+NNLAI G A ++GKHI+ EH SV++ + L+ GF V Y+ G +
Sbjct: 67 SGATEANNLAIIGYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEV 126
Query: 1521 TLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINI 1580
+S +++K+ DTILVSV NNEIG IQP+ EI E+ K H DA +VG+I++++
Sbjct: 127 DVSFIDQKLRDDTILVSVQHANNEIGTIQPVEEISEVLAGKAA-LHIDATASVGQIEVDV 185
Query: 1581 QNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGM 1640
+ D+++ S++ IYGPKG+GAL+IR+ +++ I GGG E GLRSG+ IVG
Sbjct: 186 EKIGADMLTISSNDIYGPKGVGALWIRK--EAKLQPVILGGGQENGLRSGSENVPSIVGF 243
Query: 1641 GEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGE 1700
G+A + +E +EE +R+ L+ R+ + +++ IEE Y+NG R+P+N+N+ F++IEGE
Sbjct: 244 GKAAEITAMEWREEAERLRRLRDRIIDNVLK-IEESYLNGHPEKRLPNNVNVRFSYIEGE 302
Query: 1701 SLLMAIK--DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFT 1758
S+++++ I S+GSAC+S +L+PS+VL A G E AH ++ T+GR+ T++++D
Sbjct: 303 SIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRL 362
Query: 1759 IKLLK 1763
+++L
Sbjct: 363 LEVLP 367
|
| >1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A* Length = 384 | Back alignment and structure |
|---|
Score = 677 bits (1749), Expect = 0.0
Identities = 145/371 (39%), Positives = 221/371 (59%), Gaps = 9/371 (2%)
Query: 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
D +ATT +D RV+++MI + R ++GNP S H G A +EKAR +VA+++ P E
Sbjct: 5 FDNNATTRVDDRVLEEMIVFYREKYGNPNSA-HGMGIEANLHMEKAREKVAKVLGVSPSE 63
Query: 61 IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN 120
I +TS ATES N +K A ++KR + IIT EHK+VL++++ L GF+V Y+ +
Sbjct: 64 IFFTSCATESINWILKTVAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDS 123
Query: 121 NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKG--VIFHCDAAQAVG 178
G++ L +LE+ + DT LVS+M NNE+G IQP+ ++ + + K + H DA Q +G
Sbjct: 124 RGVVKLEELEKLVDEDTFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQTIG 183
Query: 179 KIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLAT 238
KI +++ +VD SFSAHK +GPKG+G YIR+ I IHGGG E GLRSGT
Sbjct: 184 KIPFSLEKLEVDYASFSAHKFHGPKGVGITYIRK--GVPIRPLIHGGGQERGLRSGTQNV 241
Query: 239 HQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISF 298
IVG A +A E+ E K + L+ +L +GLM +I + +P+ L++SF
Sbjct: 242 PGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMN--LGAHIITPLEISLPNTLSVSF 299
Query: 299 NFIEGESLLMA--IKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTE 356
I G +L I VS+ SACTS +VL A+G + +A +IR ++ ++ TE
Sbjct: 300 PNIRGSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTE 359
Query: 357 KEIDFTIKLLK 367
+E+D+ +K ++
Sbjct: 360 EEVDYFLKKIE 370
|
| >1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A* Length = 384 | Back alignment and structure |
|---|
Score = 668 bits (1727), Expect = 0.0
Identities = 144/367 (39%), Positives = 219/367 (59%), Gaps = 9/367 (2%)
Query: 1401 ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWT 1460
ATT +D RV+++MI + R ++GNP S H G A +EKAR +VA+++ P EI +T
Sbjct: 9 ATTRVDDRVLEEMIVFYREKYGNPNSA-HGMGIEANLHMEKAREKVAKVLGVSPSEIFFT 67
Query: 1461 SGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLI 1520
S ATES N +K A ++KR + IIT EHK+VL++++ L GF+V Y+ + G++
Sbjct: 68 SCATESINWILKTVAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVV 127
Query: 1521 TLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKG--VIFHCDAAQAVGKIDI 1578
L +LE+ + DT LVS+M NNE+G IQP+ ++ + + K + H DA Q +GKI
Sbjct: 128 KLEELEKLVDEDTFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQTIGKIPF 187
Query: 1579 NIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIV 1638
+++ +VD SFSAHK +GPKG+G YIR+ I IHGGG E GLRSGT IV
Sbjct: 188 SLEKLEVDYASFSAHKFHGPKGVGITYIRK--GVPIRPLIHGGGQERGLRSGTQNVPGIV 245
Query: 1639 GMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIE 1698
G A +A E+ E K + L+ +L +GLM +I + +P+ L++SF I
Sbjct: 246 GAARAMEIAVEELSEAAKHMEKLRSKLVSGLMN--LGAHIITPLEISLPNTLSVSFPNIR 303
Query: 1699 GESLLMA--IKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEID 1756
G +L I VS+ SACTS +VL A+G + +A +IR ++ ++ TE+E+D
Sbjct: 304 GSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVD 363
Query: 1757 FTIKLLK 1763
+ +K ++
Sbjct: 364 YFLKKIE 370
|
| >3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A* Length = 432 | Back alignment and structure |
|---|
Score = 639 bits (1651), Expect = 0.0
Identities = 125/403 (31%), Positives = 202/403 (50%), Gaps = 38/403 (9%)
Query: 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
MDY+ATTP++P V+ + ++ +GNP S +++ G A+ I AR +A++I P++
Sbjct: 22 MDYNATTPLEPEVIQAVTEAMKEAWGNP-SSSYVAGRKAKDIINTARASLAKMIGGKPQD 80
Query: 61 IIWTSGATESNNLAIKGAAHFYKKRG-----------------KHIITVQTEHKSVLDSI 103
II+TSG TESNNL I + ++ H IT EH S+ +
Sbjct: 81 IIFTSGGTESNNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPL 140
Query: 104 RKL-ENDGFRVTYLKP-KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGEL 161
L E+ VT++ K NG + + + + T LV++ML NNE GVI PI EI
Sbjct: 141 EHLVEDQVAEVTFVPVSKVNGQVEVEDILAAVRPTTCLVTIMLANNETGVIMPISEISRR 200
Query: 162 CRSKG----------VIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIR 211
++ V+ H DAAQA+GK +++++ VD ++ HK YGP+ IGALY+R
Sbjct: 201 IKALNQIRAASGLPRVLVHTDAAQALGKRRVDVEDLGVDFLTIVGHKFYGPR-IGALYVR 259
Query: 212 RNPR-TRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLY 270
+ T + + GGG E R GT T I G+G+A L + + ++ L
Sbjct: 260 GVGKLTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAADLVSENCETYEAHMRDIRDYLE 319
Query: 271 NGLMESI-EEIYINGDMN--NRIPHNLNISFNFIEGES--LLMAIKDIAVSSGSACTSAS 325
L + I++N R+P+ N S + +L + + S G++C S
Sbjct: 320 ERLEAEFGKRIHLNSRFPGVERLPNTCNFSIQGSQLRGYMVLAQCQTLLASVGASCHSDH 379
Query: 326 LE-PSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK 367
+ PS VL + G ++A +++R ++GR TT E+D ++ LK
Sbjct: 380 EDRPSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVDLIVQDLK 422
|
| >3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A* Length = 432 | Back alignment and structure |
|---|
Score = 632 bits (1633), Expect = 0.0
Identities = 128/424 (30%), Positives = 207/424 (48%), Gaps = 40/424 (9%)
Query: 1378 MTGFKAESSGIVMRPYTNIVFKD--ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTA 1435
M + + G V P V+ D ATTP++P V+ + ++ +GNP S +++ G A
Sbjct: 1 MDVARNGARGSVESPPNRKVYMDYNATTPLEPEVIQAVTEAMKEAWGNP-SSSYVAGRKA 59
Query: 1436 EKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRG------------- 1482
+ I AR +A++I P++II+TSG TESNNL I + ++
Sbjct: 60 KDIINTARASLAKMIGGKPQDIIFTSGGTESNNLVIHSTVRCFHEQQTLQGRTVDQISPE 119
Query: 1483 ----KHIITVQTEHKSVLDSIRKL-ENDGFRVTYLKP-KNNGLITLSQLEEKICSDTILV 1536
H IT EH S+ + L E+ VT++ K NG + + + + T LV
Sbjct: 120 EGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSKVNGQVEVEDILAAVRPTTCLV 179
Query: 1537 SVMLVNNEIGVIQPILEIGELCRSKG----------VIFHCDAAQAVGKIDINIQNYKVD 1586
++ML NNE GVI PI EI ++ V+ H DAAQA+GK +++++ VD
Sbjct: 180 TIMLANNETGVIMPISEISRRIKALNQIRAASGLPRVLVHTDAAQALGKRRVDVEDLGVD 239
Query: 1587 LMSFSAHKIYGPKGIGALYIRRNPR-TRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFR 1645
++ HK YGP+ IGALY+R + T + + GGG E R GT T I G+G+A
Sbjct: 240 FLTIVGHKFYGPR-IGALYVRGVGKLTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAAD 298
Query: 1646 LARIEMKEELKRILFLQKRLYNGLMESI-EEIYINGDMN--NRIPHNLNISFNFIEGES- 1701
L + + ++ L L + I++N R+P+ N S +
Sbjct: 299 LVSENCETYEAHMRDIRDYLEERLEAEFGKRIHLNSRFPGVERLPNTCNFSIQGSQLRGY 358
Query: 1702 -LLMAIKDIAVSSGSACTSASLE-PSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTI 1759
+L + + S G++C S + PS VL + G ++A +++R ++GR TT E+D +
Sbjct: 359 MVLAQCQTLLASVGASCHSDHEDRPSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVDLIV 418
Query: 1760 KLLK 1763
+ LK
Sbjct: 419 QDLK 422
|
| >2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} Length = 605 | Back alignment and structure |
|---|
Score = 450 bits (1159), Expect = e-140
Identities = 214/521 (41%), Positives = 308/521 (59%), Gaps = 38/521 (7%)
Query: 640 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 699
IGID GTTNS VAI+ P VL++ G PSI+ Y DG+ VG+ AK +P+N
Sbjct: 5 IGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQN 64
Query: 700 TISSIKRFIARDLKNINT----NSFPYD-FQNKFGMLHIKTISGIKSPIEISAQIFITLK 754
T+ +IKR I R ++ + P+ G ++ +P +ISA++ +K
Sbjct: 65 TLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMK 124
Query: 755 KIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKN 814
K AE+ + + AVITVPAYFND QRQ TK+A ++AGL V R++NEPT+AA+AY LDK
Sbjct: 125 KTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDKG 184
Query: 815 IFEGIFAVYDLGGGTFDISILKFKN----GVFKVLSVGGDSNLGGDDFDYCLFSWIVKNA 870
AVYDLGGGTFDISI++ F+VL+ GD++LGG+DFD L +++V+
Sbjct: 185 TGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEE- 243
Query: 871 FLKK----LSYKDVNILMIKSREIKEL-------LSYQSSVKLNVKL-------SDKKIV 912
F K L D + R +KE LS S+ + +V L + K +
Sbjct: 244 FKKDQGIDLR-NDP---LAMQR-LKEAAEKAKIELS--SAQQTDVNLPYITADATGPKHM 296
Query: 913 NITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNF 972
NI + + ++ + LVNR+I AL DA L++ DI++VILVGG TRM + + V+ F
Sbjct: 297 NIKVTRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEF 356
Query: 973 FKTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIF 1032
F ++PD+AV GAA+Q L+G+ + LLLDV PLSLGIET+GG++ +I
Sbjct: 357 FGKEPRKDVNPDEAVAIGAAVQGGVLTGDV---KDVLLLDVTPLSLGIETMGGVMTTLIA 413
Query: 1033 RNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIK 1092
+NTTIP +S F+T +DNQ+A+ I V+QGE + + + L F L I P P G +I+
Sbjct: 414 KNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIE 473
Query: 1093 VTYQVDADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKN 1133
VT+ +DADG+L + A +K SGK++ ITIK +N DEI+
Sbjct: 474 VTFDIDADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQK 514
|
| >2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} Length = 605 | Back alignment and structure |
|---|
Score = 450 bits (1159), Expect = e-140
Identities = 214/521 (41%), Positives = 308/521 (59%), Gaps = 38/521 (7%)
Query: 2036 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 2095
IGID GTTNS VAI+ P VL++ G PSI+ Y DG+ VG+ AK +P+N
Sbjct: 5 IGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQN 64
Query: 2096 TISSIKRFIARDLKNINT----NSFPYD-FQNKFGMLHIKTISGIKSPIEISAQIFITLK 2150
T+ +IKR I R ++ + P+ G ++ +P +ISA++ +K
Sbjct: 65 TLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMK 124
Query: 2151 KIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKN 2210
K AE+ + + AVITVPAYFND QRQ TK+A ++AGL V R++NEPT+AA+AY LDK
Sbjct: 125 KTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDKG 184
Query: 2211 IFEGIFAVYDLGGGTFDISILKFKN----GVFKVLSVGGDSNLGGDDFDYCLFSWIVKNA 2266
AVYDLGGGTFDISI++ F+VL+ GD++LGG+DFD L +++V+
Sbjct: 185 TGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEE- 243
Query: 2267 FLKK----LSYKDVNILMIKSREIKEL-------LSYQSSVKLNVKL-------SDKKIV 2308
F K L D + R +KE LS S+ + +V L + K +
Sbjct: 244 FKKDQGIDLR-NDP---LAMQR-LKEAAEKAKIELS--SAQQTDVNLPYITADATGPKHM 296
Query: 2309 NITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNF 2368
NI + + ++ + LVNR+I AL DA L++ DI++VILVGG TRM + + V+ F
Sbjct: 297 NIKVTRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEF 356
Query: 2369 FKTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIF 2428
F ++PD+AV GAA+Q L+G+ + LLLDV PLSLGIET+GG++ +I
Sbjct: 357 FGKEPRKDVNPDEAVAIGAAVQGGVLTGDV---KDVLLLDVTPLSLGIETMGGVMTTLIA 413
Query: 2429 RNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIK 2488
+NTTIP +S F+T +DNQ+A+ I V+QGE + + + L F L I P P G +I+
Sbjct: 414 KNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIE 473
Query: 2489 VTYQVDADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKN 2529
VT+ +DADG+L + A +K SGK++ ITIK +N DEI+
Sbjct: 474 VTFDIDADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQK 514
|
| >2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} Length = 509 | Back alignment and structure |
|---|
Score = 435 bits (1120), Expect = e-136
Identities = 205/511 (40%), Positives = 293/511 (57%), Gaps = 49/511 (9%)
Query: 640 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 699
IGID GTTNS VA++ +V+ + G PS+V + +G+ VG+ AK Q I N
Sbjct: 5 IGIDLGTTNSCVAVLEGGEVKVIPNPEGNRTTPSVVAF-KNGERLVGEVAK-RQAITNPN 62
Query: 700 TISSIKRFIARDLK-NINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAE 758
TI SIKR + D K I + +P EISA I LK AE
Sbjct: 63 TIISIKRHMGTDYKVEIEGKQY--------------------TPQEISAIILQYLKSYAE 102
Query: 759 NAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFEG 818
+ + + AVITVPAYFND QRQ TK+A ++AGL V R++NEPT+AA+AY LDK +
Sbjct: 103 DYLGEPVTRAVITVPAYFNDAQRQATKDAGRIAGLEVERIINEPTAAALAYGLDKEEDQT 162
Query: 819 IFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKK---- 874
I VYDLGGGTFD+SIL+ +GVF+V + GD++LGGDDFD + ++V F ++
Sbjct: 163 I-LVYDLGGGTFDVSILELGDGVFEVKATAGDNHLGGDDFDQVIIDYLVNQ-FKQEHGID 220
Query: 875 LSYKDVNILMIKSREI-----KELLSYQSSVKLNVKL-------SDKKIVNITIDMKQFF 922
LS KD + + + ++ KEL + + L + + +T+ +F
Sbjct: 221 LS-KD-KMALQRLKDAAEKAKKELSGVTQT---QISLPFISANENGPLHLEMTLTRAKFE 275
Query: 923 TITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSID 982
++ HLV RT+ +AL DA LT DI+ VILVGGSTR+ + E + ++
Sbjct: 276 ELSAHLVERTMGPVRQALQDAGLTPADIDKVILVGGSTRIPAVQEAIKRELGKEPHKGVN 335
Query: 983 PDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYS 1042
PD+ V GAAIQ ++G + +LLDV PLSLGIET+GG+ K+I RNTTIP S S
Sbjct: 336 PDEVVAIGAAIQGGVIAGEVK---DVVLLDVTPLSLGIETMGGVFTKLIERNTTIPTSKS 392
Query: 1043 GEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADGL 1102
FTT DNQT + I V+QGE + + + L F+L IPP P G +I+VT+ +DA+G+
Sbjct: 393 QVFTTAADNQTTVDIHVLQGERPMAADNKSLGRFQLTGIPPAPRGVPQIEVTFDIDANGI 452
Query: 1103 LSIFAYEKISGKKKFITIKPFYNMNLDEIKN 1133
+ + A + + K++ ITIK ++ +EI+
Sbjct: 453 VHVRAKDLGTNKEQSITIKSSSGLSEEEIQR 483
|
| >2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} Length = 509 | Back alignment and structure |
|---|
Score = 435 bits (1120), Expect = e-136
Identities = 205/511 (40%), Positives = 293/511 (57%), Gaps = 49/511 (9%)
Query: 2036 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 2095
IGID GTTNS VA++ +V+ + G PS+V + +G+ VG+ AK Q I N
Sbjct: 5 IGIDLGTTNSCVAVLEGGEVKVIPNPEGNRTTPSVVAF-KNGERLVGEVAK-RQAITNPN 62
Query: 2096 TISSIKRFIARDLK-NINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAE 2154
TI SIKR + D K I + +P EISA I LK AE
Sbjct: 63 TIISIKRHMGTDYKVEIEGKQY--------------------TPQEISAIILQYLKSYAE 102
Query: 2155 NAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFEG 2214
+ + + AVITVPAYFND QRQ TK+A ++AGL V R++NEPT+AA+AY LDK +
Sbjct: 103 DYLGEPVTRAVITVPAYFNDAQRQATKDAGRIAGLEVERIINEPTAAALAYGLDKEEDQT 162
Query: 2215 IFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKK---- 2270
I VYDLGGGTFD+SIL+ +GVF+V + GD++LGGDDFD + ++V F ++
Sbjct: 163 I-LVYDLGGGTFDVSILELGDGVFEVKATAGDNHLGGDDFDQVIIDYLVNQ-FKQEHGID 220
Query: 2271 LSYKDVNILMIKSREI-----KELLSYQSSVKLNVKL-------SDKKIVNITIDMKQFF 2318
LS KD + + + ++ KEL + + L + + +T+ +F
Sbjct: 221 LS-KD-KMALQRLKDAAEKAKKELSGVTQT---QISLPFISANENGPLHLEMTLTRAKFE 275
Query: 2319 TITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSID 2378
++ HLV RT+ +AL DA LT DI+ VILVGGSTR+ + E + ++
Sbjct: 276 ELSAHLVERTMGPVRQALQDAGLTPADIDKVILVGGSTRIPAVQEAIKRELGKEPHKGVN 335
Query: 2379 PDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYS 2438
PD+ V GAAIQ ++G + +LLDV PLSLGIET+GG+ K+I RNTTIP S S
Sbjct: 336 PDEVVAIGAAIQGGVIAGEVK---DVVLLDVTPLSLGIETMGGVFTKLIERNTTIPTSKS 392
Query: 2439 GEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADGL 2498
FTT DNQT + I V+QGE + + + L F+L IPP P G +I+VT+ +DA+G+
Sbjct: 393 QVFTTAADNQTTVDIHVLQGERPMAADNKSLGRFQLTGIPPAPRGVPQIEVTFDIDANGI 452
Query: 2499 LSIFAYEKISGKKKFITIKPFYNMNLDEIKN 2529
+ + A + + K++ ITIK ++ +EI+
Sbjct: 453 VHVRAKDLGTNKEQSITIKSSSGLSEEEIQR 483
|
| >1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A* Length = 554 | Back alignment and structure |
|---|
Score = 433 bits (1116), Expect = e-134
Identities = 198/510 (38%), Positives = 293/510 (57%), Gaps = 32/510 (6%)
Query: 636 KCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNI 695
K ++GID GTT S V + ++ E++ + G PS V + D + +G AK +
Sbjct: 3 KGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAM 61
Query: 696 DPKNTISSIKRFIAR---------DLKNINTNSFPYDFQNKFGMLHIK-TISGIK---SP 742
+P NT+ KR I R D+K+ +P+ N G ++ G P
Sbjct: 62 NPTNTVFDAKRLIGRRFDDAVVQSDMKH-----WPFMVVNDAGRPKVQVEYKGETKSFYP 116
Query: 743 IEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEP 802
E+S+ + +K+IAE + + AV+TVPAYFND QRQ TK+A +AGLNVLR++NEP
Sbjct: 117 EEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEP 176
Query: 803 TSAAIAYKLDKNIF-EGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYC 861
T+AAIAY LDK + E ++DLGGGTFD+SIL G+F+V S GD++LGG+DFD
Sbjct: 177 TAAAIAYGLDKKVGAERNVLIFDLGGGTFDVSILTIAAGIFEVKSTAGDTHLGGEDFDNR 236
Query: 862 LFSWIVKNAFLKKLSYKDV---NILMIKSRE----IKELLSYQSSVKLNV-KLSDKKIVN 913
+ + + F +K KD+ + + R K LS + + + L +
Sbjct: 237 MVNHFIAE-FKRKHK-KDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFY 294
Query: 914 ITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFF 973
+I +F + L T+ KAL DA L I++++LVGGSTR+ I + + +FF
Sbjct: 295 TSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFF 354
Query: 974 K-TTLLTSIDPDKAVVFGAAIQANFLSGNRGID-DNFLLLDVIPLSLGIETIGGLVEKII 1031
L SI+PD+AV +GAA+QA LSG++ + + LLLDV PLSLGIET GG++ +I
Sbjct: 355 NGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLI 414
Query: 1032 FRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARI 1091
RNTTIP + FTT+ DNQ + I+V +GE + K+ +L FEL IPP P G +I
Sbjct: 415 KRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQI 474
Query: 1092 KVTYQVDADGLLSIFAYEKISGKKKFITIK 1121
+VT+ +DA+G+L++ A +K +GK+ ITI
Sbjct: 475 EVTFDIDANGILNVSAVDKSTGKENKITIT 504
|
| >1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A* Length = 554 | Back alignment and structure |
|---|
Score = 433 bits (1116), Expect = e-134
Identities = 198/510 (38%), Positives = 293/510 (57%), Gaps = 32/510 (6%)
Query: 2032 KCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNI 2091
K ++GID GTT S V + ++ E++ + G PS V + D + +G AK +
Sbjct: 3 KGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAM 61
Query: 2092 DPKNTISSIKRFIAR---------DLKNINTNSFPYDFQNKFGMLHIK-TISGIK---SP 2138
+P NT+ KR I R D+K+ +P+ N G ++ G P
Sbjct: 62 NPTNTVFDAKRLIGRRFDDAVVQSDMKH-----WPFMVVNDAGRPKVQVEYKGETKSFYP 116
Query: 2139 IEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEP 2198
E+S+ + +K+IAE + + AV+TVPAYFND QRQ TK+A +AGLNVLR++NEP
Sbjct: 117 EEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEP 176
Query: 2199 TSAAIAYKLDKNIF-EGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYC 2257
T+AAIAY LDK + E ++DLGGGTFD+SIL G+F+V S GD++LGG+DFD
Sbjct: 177 TAAAIAYGLDKKVGAERNVLIFDLGGGTFDVSILTIAAGIFEVKSTAGDTHLGGEDFDNR 236
Query: 2258 LFSWIVKNAFLKKLSYKDV---NILMIKSRE----IKELLSYQSSVKLNV-KLSDKKIVN 2309
+ + + F +K KD+ + + R K LS + + + L +
Sbjct: 237 MVNHFIAE-FKRKHK-KDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFY 294
Query: 2310 ITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFF 2369
+I +F + L T+ KAL DA L I++++LVGGSTR+ I + + +FF
Sbjct: 295 TSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFF 354
Query: 2370 K-TTLLTSIDPDKAVVFGAAIQANFLSGNRGID-DNFLLLDVIPLSLGIETIGGLVEKII 2427
L SI+PD+AV +GAA+QA LSG++ + + LLLDV PLSLGIET GG++ +I
Sbjct: 355 NGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLI 414
Query: 2428 FRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARI 2487
RNTTIP + FTT+ DNQ + I+V +GE + K+ +L FEL IPP P G +I
Sbjct: 415 KRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQI 474
Query: 2488 KVTYQVDADGLLSIFAYEKISGKKKFITIK 2517
+VT+ +DA+G+L++ A +K +GK+ ITI
Sbjct: 475 EVTFDIDANGILNVSAVDKSTGKENKITIT 504
|
| >3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* Length = 675 | Back alignment and structure |
|---|
Score = 409 bits (1053), Expect = e-124
Identities = 113/525 (21%), Positives = 225/525 (42%), Gaps = 54/525 (10%)
Query: 640 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 699
G+D G NS++A+ RN +++ ++ PS+V + P + Y+G+ K Q + KN
Sbjct: 5 FGLDLGNNNSVLAVARNRGIDIVVNEVSNRSTPSVVGFGPKNR-YLGETGKNKQTSNIKN 63
Query: 700 TISSIKRFIAR---------DLKNINTNSFPY---DFQNKFGMLHIKTISGIK--SPIEI 745
T++++KR I + K+ F + +K ++ S ++
Sbjct: 64 TVANLKRIIGLDYHHPDFEQESKH-----FTSKLVELDDKKTGAEVRFAGEKHVFSATQL 118
Query: 746 SAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSA 805
+A +K + I I VP ++ + QR +AA++AGLN +R++N+ T+A
Sbjct: 119 AAMFIDKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAARIAGLNPVRIVNDVTAA 178
Query: 806 AIAYKLDKNIF------EGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFD 859
++Y + K I A D+G ++ SI+ FK G KVL D + GG DFD
Sbjct: 179 GVSYGIFKTDLPEGEEKPRIVAFVDIGHSSYTCSIMAFKKGQLKVLGTACDKHFGGRDFD 238
Query: 860 YCLFSWIVKNAFLKKLSYKDVNI-------LMIKSREIKELLSYQSSVKLNVK-LSDKKI 911
+ F K D+ ++ + ++K++LS ++ +V+ + +
Sbjct: 239 LAITEHFADE-FKTKYK-IDIRENPKAYNRILTAAEKLKKVLSANTNAPFSVESVMNDVD 296
Query: 912 VNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSN 971
V+ + ++ + + L+ R +KAL A L+ ++++ V ++GG+TR+ + + +S
Sbjct: 297 VSSQLSREELEELVKPLLERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIPTLKQSISE 356
Query: 972 FFKTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVE--- 1028
F L T+++ D+A+ GAA S + F D+ P S+ + +
Sbjct: 357 AFGKPLSTTLNQDEAIAKGAAFICAIHSPTLRVRP-FKFEDIHPYSVSYSWDKQVEDEDH 415
Query: 1029 -KIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAG 1087
++ ++ P + D A + + +AN+E+ +
Sbjct: 416 MEVFPAGSSFPSTKLITLNRTGDFSMAASYTDITQLPPNTPEQ--IANWEITGVQLPEGQ 473
Query: 1088 R-ARIKVTYQVDADGLLSI----------FAYEKISGKKKFITIK 1121
+K+ + D GL +I + + KK +TI
Sbjct: 474 DSVPVKLKLRCDPSGLHTIEEAYTIEDIEAGSDTKTVKKDDLTIV 518
|
| >3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* Length = 675 | Back alignment and structure |
|---|
Score = 409 bits (1053), Expect = e-124
Identities = 113/525 (21%), Positives = 225/525 (42%), Gaps = 54/525 (10%)
Query: 2036 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 2095
G+D G NS++A+ RN +++ ++ PS+V + P + Y+G+ K Q + KN
Sbjct: 5 FGLDLGNNNSVLAVARNRGIDIVVNEVSNRSTPSVVGFGPKNR-YLGETGKNKQTSNIKN 63
Query: 2096 TISSIKRFIAR---------DLKNINTNSFPY---DFQNKFGMLHIKTISGIK--SPIEI 2141
T++++KR I + K+ F + +K ++ S ++
Sbjct: 64 TVANLKRIIGLDYHHPDFEQESKH-----FTSKLVELDDKKTGAEVRFAGEKHVFSATQL 118
Query: 2142 SAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSA 2201
+A +K + I I VP ++ + QR +AA++AGLN +R++N+ T+A
Sbjct: 119 AAMFIDKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAARIAGLNPVRIVNDVTAA 178
Query: 2202 AIAYKLDKNIF------EGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFD 2255
++Y + K I A D+G ++ SI+ FK G KVL D + GG DFD
Sbjct: 179 GVSYGIFKTDLPEGEEKPRIVAFVDIGHSSYTCSIMAFKKGQLKVLGTACDKHFGGRDFD 238
Query: 2256 YCLFSWIVKNAFLKKLSYKDVNI-------LMIKSREIKELLSYQSSVKLNVK-LSDKKI 2307
+ F K D+ ++ + ++K++LS ++ +V+ + +
Sbjct: 239 LAITEHFADE-FKTKYK-IDIRENPKAYNRILTAAEKLKKVLSANTNAPFSVESVMNDVD 296
Query: 2308 VNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSN 2367
V+ + ++ + + L+ R +KAL A L+ ++++ V ++GG+TR+ + + +S
Sbjct: 297 VSSQLSREELEELVKPLLERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIPTLKQSISE 356
Query: 2368 FFKTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVE--- 2424
F L T+++ D+A+ GAA S + F D+ P S+ + +
Sbjct: 357 AFGKPLSTTLNQDEAIAKGAAFICAIHSPTLRVRP-FKFEDIHPYSVSYSWDKQVEDEDH 415
Query: 2425 -KIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAG 2483
++ ++ P + D A + + +AN+E+ +
Sbjct: 416 MEVFPAGSSFPSTKLITLNRTGDFSMAASYTDITQLPPNTPEQ--IANWEITGVQLPEGQ 473
Query: 2484 R-ARIKVTYQVDADGLLSI----------FAYEKISGKKKFITIK 2517
+K+ + D GL +I + + KK +TI
Sbjct: 474 DSVPVKLKLRCDPSGLHTIEEAYTIEDIEAGSDTKTVKKDDLTIV 518
|
| >1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 Length = 383 | Back alignment and structure |
|---|
Score = 318 bits (817), Expect = 4e-97
Identities = 153/387 (39%), Positives = 219/387 (56%), Gaps = 35/387 (9%)
Query: 640 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 699
IGID GTTNS VAI+ P VL++ G PSI+ Y DG+ VG+ AK +P+N
Sbjct: 5 IGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQN 64
Query: 700 TISSIKRFIARDLKNINTNS----FPYD-FQNKFGMLHIKTISGIKSPIEISAQIFITLK 754
T+ +IKR I R ++ P+ G ++ +P +ISA++ +K
Sbjct: 65 TLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMK 124
Query: 755 KIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKN 814
K AE+ + + AVITVPAYFND QRQ TK+A ++AGL V R++NEPT+AA+AY LDK
Sbjct: 125 KTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDKG 184
Query: 815 IFEGIFAVYDLGGGTFDISILKFK----NGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNA 870
AVYDLGGGTFDISI++ F+VL+ GD++LGG+DFD L +++V+
Sbjct: 185 TGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEE- 243
Query: 871 FLKK----LSYKDVNILMIKSREIKEL-------LSYQSSVKLNVKL-------SDKKIV 912
F K L D + R +KE LS S+ + +V L + K +
Sbjct: 244 FKKDQGIDLR-NDP---LAMQR-LKEAAEKAKIELS--SAQQTDVNLPYITADATGPKHM 296
Query: 913 NITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNF 972
NI + + ++ + LVNR+I L AL DA L++ DI++VILVGG TRM + + V+ F
Sbjct: 297 NIKVTRAKLESLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEF 356
Query: 973 FKTTLLTSIDPDKAVVFGAAIQANFLS 999
F ++PD+AV GAA+Q L+
Sbjct: 357 FGKEPRKDVNPDEAVAIGAAVQGGVLT 383
|
| >1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 Length = 383 | Back alignment and structure |
|---|
Score = 318 bits (817), Expect = 4e-97
Identities = 153/387 (39%), Positives = 219/387 (56%), Gaps = 35/387 (9%)
Query: 2036 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 2095
IGID GTTNS VAI+ P VL++ G PSI+ Y DG+ VG+ AK +P+N
Sbjct: 5 IGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQN 64
Query: 2096 TISSIKRFIARDLKNINTNS----FPYD-FQNKFGMLHIKTISGIKSPIEISAQIFITLK 2150
T+ +IKR I R ++ P+ G ++ +P +ISA++ +K
Sbjct: 65 TLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMK 124
Query: 2151 KIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKN 2210
K AE+ + + AVITVPAYFND QRQ TK+A ++AGL V R++NEPT+AA+AY LDK
Sbjct: 125 KTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDKG 184
Query: 2211 IFEGIFAVYDLGGGTFDISILKFK----NGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNA 2266
AVYDLGGGTFDISI++ F+VL+ GD++LGG+DFD L +++V+
Sbjct: 185 TGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEE- 243
Query: 2267 FLKK----LSYKDVNILMIKSREIKEL-------LSYQSSVKLNVKL-------SDKKIV 2308
F K L D + R +KE LS S+ + +V L + K +
Sbjct: 244 FKKDQGIDLR-NDP---LAMQR-LKEAAEKAKIELS--SAQQTDVNLPYITADATGPKHM 296
Query: 2309 NITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNF 2368
NI + + ++ + LVNR+I L AL DA L++ DI++VILVGG TRM + + V+ F
Sbjct: 297 NIKVTRAKLESLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEF 356
Query: 2369 FKTTLLTSIDPDKAVVFGAAIQANFLS 2395
F ++PD+AV GAA+Q L+
Sbjct: 357 FGKEPRKDVNPDEAVAIGAAVQGGVLT 383
|
| >3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* 1ngf_A* ... Length = 404 | Back alignment and structure |
|---|
Score = 286 bits (734), Expect = 8e-86
Identities = 143/398 (35%), Positives = 212/398 (53%), Gaps = 33/398 (8%)
Query: 629 DDISVKNKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKK 688
+ +IGID GTT S V + ++ E++ + G PS V + D + +G
Sbjct: 15 TENLYFQSMPAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAF-TDTERLIGDA 73
Query: 689 AKITQNIDPKNTISSIKRFIAR---------DLKNINTNSFPYDFQNKFGMLHIK-TISG 738
AK ++P NTI KR I R D+K+ +P+ ++ G ++ G
Sbjct: 74 AKNQVAMNPTNTIFDAKRLIGRKFEDATVQSDMKH-----WPFRVVSEGGKPKVQVEYKG 128
Query: 739 IK---SPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNV 795
P EIS+ + +K+IAE + ++ AVITVPAYFND QRQ TK+A + GLNV
Sbjct: 129 ETKTFFPEEISSMVLTKMKEIAEAYLGGKVHSAVITVPAYFNDSQRQATKDAGTITGLNV 188
Query: 796 LRLLNEPTSAAIAYKLDKNIF---EGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSN 852
LR++NEPT+AAIAY LDK E ++DLGGGTFD+SIL ++G+F+V S GD++
Sbjct: 189 LRIINEPTAAAIAYGLDKKGCAGGEKNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTH 248
Query: 853 LGGDDFDYCLFSWIVKNAFLKKLSYKDV---NILMIKSRE----IKELLSYQSSVKLNV- 904
LGG+DFD + S + + F +K KD+ + + R K LS + + +
Sbjct: 249 LGGEDFDNRMVSHLAEE-FKRK-HKKDIGPNKRAVRRLRTACERAKRTLSSSTQASIEID 306
Query: 905 KLSDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKH 964
L + +I +F + L T+ KAL DA L I ++LVGGSTR+
Sbjct: 307 SLYEGVDFYTSITRARFEELNADLFRGTLEPVEKALRDAKLDKGQIQEIVLVGGSTRIPK 366
Query: 965 IHEGVSNFFK-TTLLTSIDPDKAVVFGAAIQANFLSGN 1001
I + + +FF L SI+PD+AV +GAA+QA L G+
Sbjct: 367 IQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILIGD 404
|
| >3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* 1ngf_A* ... Length = 404 | Back alignment and structure |
|---|
Score = 286 bits (734), Expect = 8e-86
Identities = 143/398 (35%), Positives = 212/398 (53%), Gaps = 33/398 (8%)
Query: 2025 DDISVKNKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKK 2084
+ +IGID GTT S V + ++ E++ + G PS V + D + +G
Sbjct: 15 TENLYFQSMPAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAF-TDTERLIGDA 73
Query: 2085 AKITQNIDPKNTISSIKRFIAR---------DLKNINTNSFPYDFQNKFGMLHIK-TISG 2134
AK ++P NTI KR I R D+K+ +P+ ++ G ++ G
Sbjct: 74 AKNQVAMNPTNTIFDAKRLIGRKFEDATVQSDMKH-----WPFRVVSEGGKPKVQVEYKG 128
Query: 2135 IK---SPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNV 2191
P EIS+ + +K+IAE + ++ AVITVPAYFND QRQ TK+A + GLNV
Sbjct: 129 ETKTFFPEEISSMVLTKMKEIAEAYLGGKVHSAVITVPAYFNDSQRQATKDAGTITGLNV 188
Query: 2192 LRLLNEPTSAAIAYKLDKNIF---EGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSN 2248
LR++NEPT+AAIAY LDK E ++DLGGGTFD+SIL ++G+F+V S GD++
Sbjct: 189 LRIINEPTAAAIAYGLDKKGCAGGEKNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTH 248
Query: 2249 LGGDDFDYCLFSWIVKNAFLKKLSYKDV---NILMIKSRE----IKELLSYQSSVKLNV- 2300
LGG+DFD + S + + F +K KD+ + + R K LS + + +
Sbjct: 249 LGGEDFDNRMVSHLAEE-FKRK-HKKDIGPNKRAVRRLRTACERAKRTLSSSTQASIEID 306
Query: 2301 KLSDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKH 2360
L + +I +F + L T+ KAL DA L I ++LVGGSTR+
Sbjct: 307 SLYEGVDFYTSITRARFEELNADLFRGTLEPVEKALRDAKLDKGQIQEIVLVGGSTRIPK 366
Query: 2361 IHEGVSNFFK-TTLLTSIDPDKAVVFGAAIQANFLSGN 2397
I + + +FF L SI+PD+AV +GAA+QA L G+
Sbjct: 367 IQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILIGD 404
|
| >4f3q_A Transcriptional regulatory protein CBU_1566; YEBC family; 2.15A {Coxiella burnetii} Length = 247 | Back alignment and structure |
|---|
Score = 228 bits (583), Expect = 9e-68
Identities = 77/210 (36%), Positives = 125/210 (59%), Gaps = 10/210 (4%)
Query: 1206 DAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDANIPKNNIFRAIQKNNSNI 1264
DAKRGK+ T+++RE+ VA G + D+N +LR ++KA AN+PK+ I RAI++
Sbjct: 21 DAKRGKVFTKLIREITVAARLGGEDIDSNPRLRAVVDKAFAANMPKDTITRAIKR--GAG 78
Query: 1265 KNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNKNGGNLSKEGSVLFMFK 1324
N +EVRYEGY +G A++VDC+T+N+ RTV+ +R+ F+K GNL EGSV ++FK
Sbjct: 79 SGAGDNLVEVRYEGYGPSGVAVMVDCLTDNKNRTVAEVRHAFSKCDGNLGTEGSVAYLFK 138
Query: 1325 HCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPSKFIEIKNSLEMTGFKAE 1384
G + F PN+ + ++++ALE GAED + D I + T P F +I+N+++
Sbjct: 139 QRGLITFPPNSDEEKIMEIALEVGAEDVTTNDDGSIDVTTLPEDFEKIRNAMKAADLNPS 198
Query: 1385 SSGIVMRPYTNIVFKDATTPIDPRVVDKMI 1414
+ + + T +D ++M+
Sbjct: 199 HAEVTVLAST-------EVGLDKDSAEQML 221
|
| >1kon_A Protein YEBC, YEBC; alpha/beta, two-domains, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics; 2.20A {Escherichia coli} SCOP: e.39.1.1 Length = 249 | Back alignment and structure |
|---|
Score = 224 bits (573), Expect = 2e-66
Identities = 76/210 (36%), Positives = 125/210 (59%), Gaps = 11/210 (5%)
Query: 1206 DAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDANIPKNNIFRAIQKNNSNI 1264
DAKRGKI T+I+REL A G +PD N +LR A++KAL N+ ++ + RAI +
Sbjct: 21 DAKRGKIFTKIIRELVTAAKLGGGDPDANPRLRAAVDKALSNNMTRDTLNRAIARGVGG- 79
Query: 1265 KNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNKNGGNLSKEGSVLFMFK 1324
+++ N + YEGY G AI+++C+++NR RTV+ +R+ F+K GGNL +GSV ++F
Sbjct: 80 -DDDANMETIIYEGYGPGGTAIMIECLSDNRNRTVAEVRHAFSKCGGNLGTDGSVAYLFS 138
Query: 1325 HCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPSKFIEIKNSLEMTGFKAE 1384
G + F ++T+++ ALE GAED + D I + T+ + +++++LE G KA+
Sbjct: 139 KKGVISF-EKGDEDTIMEAALEAGAEDVVTYDDGAIDVYTAWEEMGKVRDALEAAGLKAD 197
Query: 1385 SSGIVMRPYTNIVFKDATTPIDPRVVDKMI 1414
S+ + M P T +D K++
Sbjct: 198 SAEVSMIPST-------KADMDAETAPKLM 220
|
| >1lfp_A Hypothetical protein AQ_1575; NEW fold, thermostability, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 1.72A {Aquifex aeolicus} SCOP: e.39.1.1 Length = 249 | Back alignment and structure |
|---|
Score = 218 bits (559), Expect = 2e-64
Identities = 75/198 (37%), Positives = 112/198 (56%), Gaps = 5/198 (2%)
Query: 1206 DAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDANIPKNNIFRAIQKNNSNI 1264
DA+RGK+ ++++RE+ VA G NP+ N +LR AIE+A AN+P NI RAI+K
Sbjct: 18 DAQRGKLFSKLIREIIVATRLGGPNPEFNPRLRTAIEQAKKANMPWENIERAIKK--GAG 75
Query: 1265 KNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNKNGGNLSKEGSVLFMFK 1324
+ E + EV YEGY+ G A++V T+NR RT S +R++F K+GGNL G V ++F+
Sbjct: 76 ELEGEQFEEVIYEGYAPGGVAVMVLATTDNRNRTTSEVRHVFTKHGGNLGASGCVSYLFE 135
Query: 1325 HCGQLLF-LPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPSKFIEIKNSLEMTGFKA 1383
G + + LL+ A+E GAED + I T P + E+K +LE G
Sbjct: 136 RKGYIEVPAKEVSEEELLEKAIEVGAEDV-QPGEEVHIIYTVPEELYEVKENLEKLGVPI 194
Query: 1384 ESSGIVMRPYTNIVFKDA 1401
E + I +P + + D
Sbjct: 195 EKAQITWKPISTVQINDE 212
|
| >1mw7_A Hypothetical protein HP0162; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Helicobacter pylori} SCOP: e.39.1.1 Length = 240 | Back alignment and structure |
|---|
Score = 208 bits (531), Expect = 1e-60
Identities = 56/217 (25%), Positives = 98/217 (45%), Gaps = 20/217 (9%)
Query: 1206 DAKRGKICTRIMRELRVAINFGN-NPDTNIKLRLAIEKALDANIPKNNIFRAIQKNNSNI 1264
K K+ ++ + + +A G PDTN KLR AI A N+PK+NI AI++ +
Sbjct: 16 WDKMSKVFPKLAKAITLAAKDGGSEPDTNAKLRTAILNAKAQNMPKDNIDAAIKRAS--- 72
Query: 1265 KNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNK-NGGNLSKEGSVLFMF 1323
++ N E+ YEG + G II++C+T+N RT++N+++ FNK G ++ GS+ FMF
Sbjct: 73 -SKEGNLSEITYEGKANFGVLIIMECMTDNPTRTIANLKSYFNKTQGASIVPNGSLEFMF 131
Query: 1324 KHCGQLLFLPNTKKN------TLLDLALEKGAEDFLIDKDNKITIITSPSKFIEIKNSLE 1377
L N +N L ++ G E+ + ++KI I + F + E
Sbjct: 132 NRKSVFECLKNEVENLKLSLEDLEFALIDYGLEEL-EEVEDKIIIRGDYNSFKLLNEGFE 190
Query: 1378 MTGFKAESSGIVMRPYTNIVFKDATTPIDPRVVDKMI 1414
+ + T ++ ++
Sbjct: 191 SLKLPILKASLQRIATT-------PIELNDEQMELTE 220
|
| >1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1 Length = 227 | Back alignment and structure |
|---|
Score = 203 bits (520), Expect = 2e-59
Identities = 74/123 (60%), Positives = 96/123 (78%)
Query: 1011 LDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNC 1070
+DVIPLSLG+ET+GGLVEK+I RNTTIP + + +FTTFKD QTA++I V+QGE ELV++C
Sbjct: 1 MDVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDC 60
Query: 1071 QVLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYEKISGKKKFITIKPFYNMNLDE 1130
+ LA F LR IP +PAG A I+VT+QVDADGLLS+ A EK +G + I +KP Y + E
Sbjct: 61 RSLARFALRGIPALPAGGAHIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYGLTDSE 120
Query: 1131 IKN 1133
I +
Sbjct: 121 IAS 123
|
| >1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1 Length = 227 | Back alignment and structure |
|---|
Score = 203 bits (520), Expect = 2e-59
Identities = 74/123 (60%), Positives = 96/123 (78%)
Query: 2407 LDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNC 2466
+DVIPLSLG+ET+GGLVEK+I RNTTIP + + +FTTFKD QTA++I V+QGE ELV++C
Sbjct: 1 MDVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDC 60
Query: 2467 QVLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYEKISGKKKFITIKPFYNMNLDE 2526
+ LA F LR IP +PAG A I+VT+QVDADGLLS+ A EK +G + I +KP Y + E
Sbjct: 61 RSLARFALRGIPALPAGGAHIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYGLTDSE 120
Query: 2527 IKN 2529
I +
Sbjct: 121 IAS 123
|
| >2z7e_A ISCU protein, NIFU-like protein; iron-sulfur cluster, iron, biosynthesis, [2Fe-2S], asymmetric trimer, three conserved Cys; 2.30A {Aquifex aeolicus} Length = 157 | Back alignment and structure |
|---|
Score = 166 bits (423), Expect = 2e-47
Identities = 61/131 (46%), Positives = 76/131 (58%), Gaps = 21/131 (16%)
Query: 373 MSYSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVN-KNGVITDAKFK 431
Y+EKVLDH+ NPRNVGV E + G G G PACG M IKVN +N VI D +FK
Sbjct: 3 FEYNEKVLDHFLNPRNVGVLEDAN---GVGQCGNPACGAAMLFTIKVNPENDVIEDVRFK 59
Query: 432 TYGCGSAIASSSLVTEWVKGKTLDEAMSIKNTDIAEELV---------------TKKAAK 476
T+GCGSAIA SS++TE VKGK + A+++ DI EEL T A
Sbjct: 60 TFGCGSAIAVSSMLTEMVKGKPIQYALNLTYKDIFEELGGLPPQKIHCTNLGLETLHVA- 118
Query: 477 YINKYIQKRGK 487
I Y+ K+G+
Sbjct: 119 -IKDYLMKQGR 128
|
| >2z7e_A ISCU protein, NIFU-like protein; iron-sulfur cluster, iron, biosynthesis, [2Fe-2S], asymmetric trimer, three conserved Cys; 2.30A {Aquifex aeolicus} Length = 157 | Back alignment and structure |
|---|
Score = 166 bits (423), Expect = 2e-47
Identities = 61/131 (46%), Positives = 76/131 (58%), Gaps = 21/131 (16%)
Query: 1769 MSYSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVN-KNGVITDAKFK 1827
Y+EKVLDH+ NPRNVGV E + G G G PACG M IKVN +N VI D +FK
Sbjct: 3 FEYNEKVLDHFLNPRNVGVLEDAN---GVGQCGNPACGAAMLFTIKVNPENDVIEDVRFK 59
Query: 1828 TYGCGSAIASSSLVTEWVKGKTLDEAMSIKNTDIAEELV---------------TKKAAK 1872
T+GCGSAIA SS++TE VKGK + A+++ DI EEL T A
Sbjct: 60 TFGCGSAIAVSSMLTEMVKGKPIQYALNLTYKDIFEELGGLPPQKIHCTNLGLETLHVA- 118
Query: 1873 YINKYIQKRGK 1883
I Y+ K+G+
Sbjct: 119 -IKDYLMKQGR 128
|
| >3lvl_A NIFU-like protein; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 3.00A {Escherichia coli} PDB: 2l4x_A 2kqk_A 1q48_A 1r9p_A 1wfz_A Length = 129 | Back alignment and structure |
|---|
Score = 164 bits (418), Expect = 3e-47
Identities = 80/95 (84%), Positives = 87/95 (91%)
Query: 375 YSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKTYG 434
YSEKV+DHYENPRNVG F+ ND VG+GMVGAPACGDVMKLQIKVN G+I DA+FKTYG
Sbjct: 4 YSEKVIDHYENPRNVGSFDNNDENVGSGMVGAPACGDVMKLQIKVNDEGIIEDARFKTYG 63
Query: 435 CGSAIASSSLVTEWVKGKTLDEAMSIKNTDIAEEL 469
CGSAIASSSLVTEWVKGK+LDEA +IKNTDIAEEL
Sbjct: 64 CGSAIASSSLVTEWVKGKSLDEAQAIKNTDIAEEL 98
|
| >3lvl_A NIFU-like protein; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 3.00A {Escherichia coli} PDB: 2l4x_A 2kqk_A 1q48_A 1r9p_A 1wfz_A Length = 129 | Back alignment and structure |
|---|
Score = 164 bits (418), Expect = 3e-47
Identities = 80/95 (84%), Positives = 87/95 (91%)
Query: 1771 YSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKTYG 1830
YSEKV+DHYENPRNVG F+ ND VG+GMVGAPACGDVMKLQIKVN G+I DA+FKTYG
Sbjct: 4 YSEKVIDHYENPRNVGSFDNNDENVGSGMVGAPACGDVMKLQIKVNDEGIIEDARFKTYG 63
Query: 1831 CGSAIASSSLVTEWVKGKTLDEAMSIKNTDIAEEL 1865
CGSAIASSSLVTEWVKGK+LDEA +IKNTDIAEEL
Sbjct: 64 CGSAIASSSLVTEWVKGKSLDEAQAIKNTDIAEEL 98
|
| >4eb5_C NIFU protein (NIFU-1); scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_C* Length = 153 | Back alignment and structure |
|---|
Score = 158 bits (402), Expect = 9e-45
Identities = 56/128 (43%), Positives = 73/128 (57%), Gaps = 21/128 (16%)
Query: 375 YSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKTYG 434
YS+KV DH++NPRNVG E D G G VG P CGD+M + IKV + I D KF+T+G
Sbjct: 2 YSDKVFDHFQNPRNVGKIEDAD---GVGTVGNPVCGDLMTIYIKVK-DNRIEDIKFQTFG 57
Query: 435 CGSAIASSSLVTEWVKGKTLDEAMSIKNTDIAEELV---------------TKKAAKYIN 479
C +AIA+SS+ TE KGKT++EA+ I +AE L + A I
Sbjct: 58 CAAAIATSSMATEMAKGKTIEEALKITRDAVAEALGGLPKQKMHCSNLAADALRRA--IV 115
Query: 480 KYIQKRGK 487
Y +K GK
Sbjct: 116 DYFRKNGK 123
|
| >4eb5_C NIFU protein (NIFU-1); scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_C* Length = 153 | Back alignment and structure |
|---|
Score = 158 bits (402), Expect = 9e-45
Identities = 56/128 (43%), Positives = 73/128 (57%), Gaps = 21/128 (16%)
Query: 1771 YSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKTYG 1830
YS+KV DH++NPRNVG E D G G VG P CGD+M + IKV + I D KF+T+G
Sbjct: 2 YSDKVFDHFQNPRNVGKIEDAD---GVGTVGNPVCGDLMTIYIKVK-DNRIEDIKFQTFG 57
Query: 1831 CGSAIASSSLVTEWVKGKTLDEAMSIKNTDIAEELV---------------TKKAAKYIN 1875
C +AIA+SS+ TE KGKT++EA+ I +AE L + A I
Sbjct: 58 CAAAIATSSMATEMAKGKTIEEALKITRDAVAEALGGLPKQKMHCSNLAADALRRA--IV 115
Query: 1876 KYIQKRGK 1883
Y +K GK
Sbjct: 116 DYFRKNGK 123
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* Length = 371 | Back alignment and structure |
|---|
Score = 160 bits (407), Expect = 1e-42
Identities = 54/383 (14%), Positives = 126/383 (32%), Gaps = 44/383 (11%)
Query: 5 ATTPIDPRVVDKMIPYLRVQFGNPASRNHIY-GWTAEKAIEKARNEVAQLIYADPREIIW 63
+ ++ + + N++ + + D
Sbjct: 17 TGGKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCD--VARV 74
Query: 64 TSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP--KNN 121
T+GA E+ + K+ ++ + H S + E G + + +
Sbjct: 75 TNGAREAKFAVMHS----LAKKDAWVVMDENCHYSSYVAA---ERAGLNIALVPKTDYPD 127
Query: 122 GLITLSQLEEKICSDT-----ILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQA 176
IT + I +L + + G + + +I ++C V + A A
Sbjct: 128 YAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYA 187
Query: 177 VGKIDINIQNYKVDLMSFSAHKIYGPKG-IGALYIRRNPRTRIEAQIHG----GGHEYGL 231
+G++ ++++ D + S HK G IG + ++ E + E L
Sbjct: 188 IGRMPVSLKEIGADFIVGSGHKSMAASGPIGVMGMKEE---WAEIVLRRSEKYKNKEVEL 244
Query: 232 RSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIP 291
T I+ + +F R +K + + ++ ME + I GD P
Sbjct: 245 LGCTARGATIITLMASFPHVRERIKRWDEEVEKARRFAAE--MEKL-GIKQLGD----NP 297
Query: 292 HNLNISFNFIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIG 351
HN ++ F E + +I+ + E L++ + + F +
Sbjct: 298 HNHDLMFFHAEV------LYEISKKAKGGRFFLYRE----LKSRKIHGIKPGLTRYFKLS 347
Query: 352 RF-TTEKEIDFTIK-LLKMKEFF 372
+ +++E+D+ + ++ E +
Sbjct: 348 TYGLSDEEVDYVLNAFKEIIEKY 370
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* Length = 371 | Back alignment and structure |
|---|
Score = 160 bits (407), Expect = 1e-42
Identities = 54/383 (14%), Positives = 126/383 (32%), Gaps = 44/383 (11%)
Query: 1401 ATTPIDPRVVDKMIPYLRVQFGNPASRNHIY-GWTAEKAIEKARNEVAQLIYADPREIIW 1459
+ ++ + + N++ + + D
Sbjct: 17 TGGKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCD--VARV 74
Query: 1460 TSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP--KNN 1517
T+GA E+ + K+ ++ + H S + E G + + +
Sbjct: 75 TNGAREAKFAVMHS----LAKKDAWVVMDENCHYSSYVAA---ERAGLNIALVPKTDYPD 127
Query: 1518 GLITLSQLEEKICSDT-----ILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQA 1572
IT + I +L + + G + + +I ++C V + A A
Sbjct: 128 YAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYA 187
Query: 1573 VGKIDINIQNYKVDLMSFSAHKIYGPKG-IGALYIRRNPRTRIEAQIHG----GGHEYGL 1627
+G++ ++++ D + S HK G IG + ++ E + E L
Sbjct: 188 IGRMPVSLKEIGADFIVGSGHKSMAASGPIGVMGMKEE---WAEIVLRRSEKYKNKEVEL 244
Query: 1628 RSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIP 1687
T I+ + +F R +K + + ++ ME + I GD P
Sbjct: 245 LGCTARGATIITLMASFPHVRERIKRWDEEVEKARRFAAE--MEKL-GIKQLGD----NP 297
Query: 1688 HNLNISFNFIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIG 1747
HN ++ F E + +I+ + E L++ + + F +
Sbjct: 298 HNHDLMFFHAEV------LYEISKKAKGGRFFLYRE----LKSRKIHGIKPGLTRYFKLS 347
Query: 1748 RF-TTEKEIDFTIK-LLKMKEFF 1768
+ +++E+D+ + ++ E +
Sbjct: 348 TYGLSDEEVDYVLNAFKEIIEKY 370
|
| >1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* Length = 390 | Back alignment and structure |
|---|
Score = 156 bits (396), Expect = 7e-41
Identities = 70/398 (17%), Positives = 130/398 (32%), Gaps = 64/398 (16%)
Query: 2 DYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREI 61
++ + ++ + N ++ I + R +A+ DP I
Sbjct: 21 NFGGQGILPTVALEAITAMYGYLQENGPFSIAANQH-IQQLIAQLRQALAETFNVDPNTI 79
Query: 62 IWTSGATESNNLAIKGAAHFYK-KRGKHIITVQTEHKSVL---DSIRKLENDGFRVTYLK 117
T T ++ +G I+ EH ++ +I +R +
Sbjct: 80 TITDNVTTGCDI----VLWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVA 135
Query: 118 PKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHC----DA 173
N + L + T LV + + G + P+ EI +CR + D
Sbjct: 136 ATLNQGDAAAVLANHLGPKTRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDG 195
Query: 174 AQAVGKIDINIQNYKVDLMSFSAHKI-YGPKGIGALYIRRNPRTRIEAQIHGGG------ 226
AQ+ G + ++ +VD +F+ HK GP G+G LYI + I G
Sbjct: 196 AQSAGSLPLDFSRLEVDYYAFTGHKWFAGPAGVGGLYIHGDCLGEINPTYVGWRSITYGA 255
Query: 227 -------HEYGLR--SGTLATHQIVGMGEAFR-LARIEMKEEL-KRILFLQKRLYNGLME 275
E G R T A Q G+ A + R EE + I + L+ GL +
Sbjct: 256 KGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQ 315
Query: 276 SIEEIYINGDMNNRIPHNLNISFNFIEG----ESLLMAI--KDIAVSSGSACTSASLEPS 329
+ ++ + +SF ++ +++ + + I +
Sbjct: 316 -LPHVHCLATSAPQAG---LVSFT-VDSPLGHRAIVQKLEEQRIYL-------------- 356
Query: 330 YVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK 367
R + IR T E+EI+ + L
Sbjct: 357 ---RTIA-----DPDCIRACCHYITDEEEINHLLARLA 386
|
| >1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* Length = 390 | Back alignment and structure |
|---|
Score = 152 bits (387), Expect = 1e-39
Identities = 70/395 (17%), Positives = 128/395 (32%), Gaps = 64/395 (16%)
Query: 1401 ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWT 1460
+ ++ + N ++ I + R +A+ DP I T
Sbjct: 24 GQGILPTVALEAITAMYGYLQENGPFSIAANQH-IQQLIAQLRQALAETFNVDPNTITIT 82
Query: 1461 SGATESNNLAIKGAAHFYK-KRGKHIITVQTEHKSVL---DSIRKLENDGFRVTYLKPKN 1516
T ++ +G I+ EH ++ +I +R +
Sbjct: 83 DNVTTGCDI----VLWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATL 138
Query: 1517 NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHC----DAAQA 1572
N + L + T LV + + G + P+ EI +CR + D AQ+
Sbjct: 139 NQGDAAAVLANHLGPKTRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQS 198
Query: 1573 VGKIDINIQNYKVDLMSFSAHKI-YGPKGIGALYIRRNPRTRIEAQIHGGG--------- 1622
G + ++ +VD +F+ HK GP G+G LYI + I G
Sbjct: 199 AGSLPLDFSRLEVDYYAFTGHKWFAGPAGVGGLYIHGDCLGEINPTYVGWRSITYGAKGE 258
Query: 1623 ----HEYGLR--SGTLATHQIVGMGEAFR-LARIEMKEEL-KRILFLQKRLYNGLMESIE 1674
E G R T A Q G+ A + R EE + I + L+ GL + +
Sbjct: 259 PTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQ-LP 317
Query: 1675 EIYINGDMNNRIPHNLNISFNFIEG----ESLLMAI--KDIAVSSGSACTSASLEPSYVL 1728
++ + +SF ++ +++ + + I +
Sbjct: 318 HVHCLATSAPQAG---LVSFT-VDSPLGHRAIVQKLEEQRIYL----------------- 356
Query: 1729 RALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK 1763
R + IR T E+EI+ + L
Sbjct: 357 RTIA-----DPDCIRACCHYITDEEEINHLLARLA 386
|
| >1q5l_A Chaperone protein DNAK; HSP70, chaperone, heat shock protein; NMR {Escherichia coli} SCOP: b.130.1.1 Length = 135 | Back alignment and structure |
|---|
Score = 141 bits (358), Expect = 5e-39
Identities = 55/132 (41%), Positives = 84/132 (63%), Gaps = 3/132 (2%)
Query: 990 GAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFK 1049
G++ + + ++DV PLSLGIET+GG++ +I +NTTIP +S F+T +
Sbjct: 2 GSSHHHHHHGL---VPRGSHMVDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAE 58
Query: 1050 DNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYE 1109
DNQ+A+ I V+QGE + + + L F L I P P G +I+VT+ +DADG+L + A +
Sbjct: 59 DNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKD 118
Query: 1110 KISGKKKFITIK 1121
K SGK++ ITIK
Sbjct: 119 KNSGKEQKITIK 130
|
| >1q5l_A Chaperone protein DNAK; HSP70, chaperone, heat shock protein; NMR {Escherichia coli} SCOP: b.130.1.1 Length = 135 | Back alignment and structure |
|---|
Score = 141 bits (358), Expect = 5e-39
Identities = 55/132 (41%), Positives = 84/132 (63%), Gaps = 3/132 (2%)
Query: 2386 GAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFK 2445
G++ + + ++DV PLSLGIET+GG++ +I +NTTIP +S F+T +
Sbjct: 2 GSSHHHHHHGL---VPRGSHMVDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAE 58
Query: 2446 DNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYE 2505
DNQ+A+ I V+QGE + + + L F L I P P G +I+VT+ +DADG+L + A +
Sbjct: 59 DNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKD 118
Query: 2506 KISGKKKFITIK 2517
K SGK++ ITIK
Sbjct: 119 KNSGKEQKITIK 130
|
| >3n8e_A Stress-70 protein, mitochondrial; beta-sandwich, helix, substrate binding domain, structural G consortium, SGC, chaperone; 2.80A {Homo sapiens} Length = 182 | Back alignment and structure |
|---|
Score = 143 bits (362), Expect = 8e-39
Identities = 55/125 (44%), Positives = 83/125 (66%)
Query: 1009 LLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVK 1068
+DV PLSLGIET+GG+ K+I RNTTIP S F+T D QT + IKV QGE E+
Sbjct: 21 QSMDVTPLSLGIETLGGVFTKLINRNTTIPTKKSQVFSTAADGQTQVEIKVCQGEREMAG 80
Query: 1069 NCQVLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYEKISGKKKFITIKPFYNMNL 1128
+ ++L F L IPP P G +I+VT+ +DA+G++ + A +K +G+++ I I+ ++
Sbjct: 81 DNKLLGQFTLIGIPPAPRGVPQIEVTFDIDANGIVHVSAKDKGTGREQQIVIQSSGGLSK 140
Query: 1129 DEIKN 1133
D+I+N
Sbjct: 141 DDIEN 145
|
| >3n8e_A Stress-70 protein, mitochondrial; beta-sandwich, helix, substrate binding domain, structural G consortium, SGC, chaperone; 2.80A {Homo sapiens} Length = 182 | Back alignment and structure |
|---|
Score = 143 bits (362), Expect = 8e-39
Identities = 55/125 (44%), Positives = 83/125 (66%)
Query: 2405 LLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVK 2464
+DV PLSLGIET+GG+ K+I RNTTIP S F+T D QT + IKV QGE E+
Sbjct: 21 QSMDVTPLSLGIETLGGVFTKLINRNTTIPTKKSQVFSTAADGQTQVEIKVCQGEREMAG 80
Query: 2465 NCQVLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYEKISGKKKFITIKPFYNMNL 2524
+ ++L F L IPP P G +I+VT+ +DA+G++ + A +K +G+++ I I+ ++
Sbjct: 81 DNKLLGQFTLIGIPPAPRGVPQIEVTFDIDANGIVHVSAKDKGTGREQQIVIQSSGGLSK 140
Query: 2525 DEIKN 2529
D+I+N
Sbjct: 141 DDIEN 145
|
| >3h0x_A 78 kDa glucose-regulated protein homolog; structural genomics, APC89502.3, peptide binding, chaperone, BIP, PSI-2; 1.92A {Saccharomyces cerevisiae} PDB: 1ckr_A 7hsc_A Length = 152 | Back alignment and structure |
|---|
Score = 141 bits (357), Expect = 1e-38
Identities = 51/110 (46%), Positives = 71/110 (64%)
Query: 1012 DVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQ 1071
DV L+LGIET GG++ +I RNT IP S F+T DNQ + IKV +GE + K+
Sbjct: 4 DVNALTLGIETTGGVMTPLIKRNTAIPTKKSQIFSTAVDNQPTVMIKVYEGERAMSKDNN 63
Query: 1072 VLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYEKISGKKKFITIK 1121
+L FEL IPP P G +I+VT+ +DA+G+L + A +K +GK + ITI
Sbjct: 64 LLGKFELTGIPPAPRGVPQIEVTFALDANGILKVSATDKGTGKSESITIT 113
|
| >3h0x_A 78 kDa glucose-regulated protein homolog; structural genomics, APC89502.3, peptide binding, chaperone, BIP, PSI-2; 1.92A {Saccharomyces cerevisiae} PDB: 1ckr_A 7hsc_A Length = 152 | Back alignment and structure |
|---|
Score = 141 bits (357), Expect = 1e-38
Identities = 51/110 (46%), Positives = 71/110 (64%)
Query: 2408 DVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQ 2467
DV L+LGIET GG++ +I RNT IP S F+T DNQ + IKV +GE + K+
Sbjct: 4 DVNALTLGIETTGGVMTPLIKRNTAIPTKKSQIFSTAVDNQPTVMIKVYEGERAMSKDNN 63
Query: 2468 VLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYEKISGKKKFITIK 2517
+L FEL IPP P G +I+VT+ +DA+G+L + A +K +GK + ITI
Sbjct: 64 LLGKFELTGIPPAPRGVPQIEVTFALDANGILKVSATDKGTGKSESITIT 113
|
| >3dob_A Heat shock 70 kDa protein F44E5.5; structural genomics, APC90015.11, peptide-binding domain, HS 2, protein structure initiative; 2.39A {Caenorhabditis elegans} Length = 152 | Back alignment and structure |
|---|
Score = 141 bits (357), Expect = 1e-38
Identities = 51/110 (46%), Positives = 73/110 (66%)
Query: 1012 DVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQ 1071
DV PLSLGIET GG++ +I RNT IP FTT+ DNQ ++I+V +GE + ++
Sbjct: 4 DVAPLSLGIETAGGVMTNLIDRNTRIPTKACKTFTTYADNQPGVSIQVYEGERAMTRDNH 63
Query: 1072 VLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYEKISGKKKFITIK 1121
L FEL IPP P G +I+VT+ +DA+G+L++ A +K +GK ITI+
Sbjct: 64 RLGTFELSGIPPAPRGVPQIEVTFNIDANGILNVSAEDKSTGKSNRITIQ 113
|
| >3dob_A Heat shock 70 kDa protein F44E5.5; structural genomics, APC90015.11, peptide-binding domain, HS 2, protein structure initiative; 2.39A {Caenorhabditis elegans} Length = 152 | Back alignment and structure |
|---|
Score = 141 bits (357), Expect = 1e-38
Identities = 51/110 (46%), Positives = 73/110 (66%)
Query: 2408 DVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQ 2467
DV PLSLGIET GG++ +I RNT IP FTT+ DNQ ++I+V +GE + ++
Sbjct: 4 DVAPLSLGIETAGGVMTNLIDRNTRIPTKACKTFTTYADNQPGVSIQVYEGERAMTRDNH 63
Query: 2468 VLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYEKISGKKKFITIK 2517
L FEL IPP P G +I+VT+ +DA+G+L++ A +K +GK ITI+
Sbjct: 64 RLGTFELSGIPPAPRGVPQIEVTFNIDANGILNVSAEDKSTGKSNRITIQ 113
|
| >2op6_A Heat shock 70 kDa protein D; HSP70/peptide-binding domain, structural genomics, APC90014. 2, protein structure initiative; 1.85A {Caenorhabditis elegans} Length = 152 | Back alignment and structure |
|---|
Score = 140 bits (356), Expect = 2e-38
Identities = 48/110 (43%), Positives = 75/110 (68%)
Query: 1012 DVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQ 1071
DV PL+LGIET+GG++ K+I RNT IP S F+T D+Q+A++I + +GE +V +
Sbjct: 4 DVNPLTLGIETVGGVMTKLIGRNTVIPTKKSQVFSTAADSQSAVSIVIYEGERPMVMDNH 63
Query: 1072 VLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYEKISGKKKFITIK 1121
L NF++ IPP P G +I+VT+++D +G+L + A +K +G K +TI
Sbjct: 64 KLGNFDVTGIPPAPRGVPQIEVTFEIDVNGILHVSAEDKGTGNKNKLTIT 113
|
| >2op6_A Heat shock 70 kDa protein D; HSP70/peptide-binding domain, structural genomics, APC90014. 2, protein structure initiative; 1.85A {Caenorhabditis elegans} Length = 152 | Back alignment and structure |
|---|
Score = 140 bits (356), Expect = 2e-38
Identities = 48/110 (43%), Positives = 75/110 (68%)
Query: 2408 DVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQ 2467
DV PL+LGIET+GG++ K+I RNT IP S F+T D+Q+A++I + +GE +V +
Sbjct: 4 DVNPLTLGIETVGGVMTKLIGRNTVIPTKKSQVFSTAADSQSAVSIVIYEGERPMVMDNH 63
Query: 2468 VLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYEKISGKKKFITIK 2517
L NF++ IPP P G +I+VT+++D +G+L + A +K +G K +TI
Sbjct: 64 KLGNFDVTGIPPAPRGVPQIEVTFEIDVNGILHVSAEDKGTGNKNKLTIT 113
|
| >4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A Length = 219 | Back alignment and structure |
|---|
Score = 138 bits (349), Expect = 1e-36
Identities = 61/124 (49%), Positives = 86/124 (69%)
Query: 1009 LLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVK 1068
LLLDV PLSLGIET+GG++ +I +NTTIP +S F+T +DNQ+A+ I V+QGE +
Sbjct: 2 LLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAA 61
Query: 1069 NCQVLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYEKISGKKKFITIKPFYNMNL 1128
+ + L F L I P P G +I+VT+ +DADG+L + A +K SGK++ ITIK +N
Sbjct: 62 DNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLNE 121
Query: 1129 DEIK 1132
DEI+
Sbjct: 122 DEIQ 125
|
| >4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A Length = 219 | Back alignment and structure |
|---|
Score = 138 bits (349), Expect = 1e-36
Identities = 61/124 (49%), Positives = 86/124 (69%)
Query: 2405 LLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVK 2464
LLLDV PLSLGIET+GG++ +I +NTTIP +S F+T +DNQ+A+ I V+QGE +
Sbjct: 2 LLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAA 61
Query: 2465 NCQVLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYEKISGKKKFITIKPFYNMNL 2524
+ + L F L I P P G +I+VT+ +DADG+L + A +K SGK++ ITIK +N
Sbjct: 62 DNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLNE 121
Query: 2525 DEIK 2528
DEI+
Sbjct: 122 DEIQ 125
|
| >3dqg_A Heat shock 70 kDa protein F; structural genomics, APC90008.12, HSP70 protein, peptide-BIN domain, PSI-2, protein structure initiative; 1.72A {Caenorhabditis elegans} Length = 151 | Back alignment and structure |
|---|
Score = 135 bits (341), Expect = 2e-36
Identities = 54/122 (44%), Positives = 84/122 (68%)
Query: 1012 DVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQ 1071
DV PLSLGIET+GG++ K+I RNTTIP S F+T D QT + IKV QGE E+ + +
Sbjct: 4 DVTPLSLGIETLGGIMTKLITRNTTIPTKKSQVFSTAADGQTQVQIKVFQGEREMATSNK 63
Query: 1072 VLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYEKISGKKKFITIKPFYNMNLDEI 1131
+L F L IPP P G +++VT+ +DA+G++++ A ++ +GK++ I I+ ++ D+I
Sbjct: 64 LLGQFSLVGIPPAPRGVPQVEVTFDIDANGIVNVSARDRGTGKEQQIVIQSSGGLSKDQI 123
Query: 1132 KN 1133
+N
Sbjct: 124 EN 125
|
| >3dqg_A Heat shock 70 kDa protein F; structural genomics, APC90008.12, HSP70 protein, peptide-BIN domain, PSI-2, protein structure initiative; 1.72A {Caenorhabditis elegans} Length = 151 | Back alignment and structure |
|---|
Score = 135 bits (341), Expect = 2e-36
Identities = 54/122 (44%), Positives = 84/122 (68%)
Query: 2408 DVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQ 2467
DV PLSLGIET+GG++ K+I RNTTIP S F+T D QT + IKV QGE E+ + +
Sbjct: 4 DVTPLSLGIETLGGIMTKLITRNTTIPTKKSQVFSTAADGQTQVQIKVFQGEREMATSNK 63
Query: 2468 VLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYEKISGKKKFITIKPFYNMNLDEI 2527
+L F L IPP P G +++VT+ +DA+G++++ A ++ +GK++ I I+ ++ D+I
Sbjct: 64 LLGQFSLVGIPPAPRGVPQVEVTFDIDANGIVNVSARDRGTGKEQQIVIQSSGGLSKDQI 123
Query: 2528 KN 2529
+N
Sbjct: 124 EN 125
|
| >1su0_B NIFU like protein ISCU; structural genomics, BSGC structure funded by NI protein structure initiative, PSI; 2.30A {Streptococcus pyogenes} SCOP: d.224.1.2 Length = 159 | Back alignment and structure |
|---|
Score = 134 bits (340), Expect = 3e-36
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Query: 375 YSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKTYG 434
Y V DH + P + G + V + P CGDV+ L +K + I D F G
Sbjct: 10 YMAVVADHSKRPHHHGQLDG----VEAVQLNNPTCGDVISLTVKFD-EDKIEDIAFAGNG 64
Query: 435 CGSAIASSSLVTEWVKGKTLDEAMSIKNT 463
C + ASSS++T+ V GK+ +EA+++ +
Sbjct: 65 CTISTASSSMMTDAVIGKSKEEALALADI 93
|
| >1su0_B NIFU like protein ISCU; structural genomics, BSGC structure funded by NI protein structure initiative, PSI; 2.30A {Streptococcus pyogenes} SCOP: d.224.1.2 Length = 159 | Back alignment and structure |
|---|
Score = 134 bits (340), Expect = 3e-36
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Query: 1771 YSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKTYG 1830
Y V DH + P + G + V + P CGDV+ L +K + I D F G
Sbjct: 10 YMAVVADHSKRPHHHGQLDG----VEAVQLNNPTCGDVISLTVKFD-EDKIEDIAFAGNG 64
Query: 1831 CGSAIASSSLVTEWVKGKTLDEAMSIKNT 1859
C + ASSS++T+ V GK+ +EA+++ +
Sbjct: 65 CTISTASSSMMTDAVIGKSKEEALALADI 93
|
| >1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 Length = 420 | Back alignment and structure |
|---|
Score = 141 bits (357), Expect = 1e-35
Identities = 102/406 (25%), Positives = 164/406 (40%), Gaps = 60/406 (14%)
Query: 2 DYSATT--PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-DP 58
D +AT+ P V++K++ Y N H A A E RN+VA+ I A P
Sbjct: 33 DNAATSQKPR--AVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSP 90
Query: 59 REIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSI--------RKLENDG 110
REI++T ATE+ NL K G IIT EH S ++ + G
Sbjct: 91 REIVYTRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHS---NLVPWQMVAAKT----G 143
Query: 111 FRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFH 170
+ +++ L + + T LV+V+ ++N +G + P EI +L G
Sbjct: 144 AVLKFVQLDEQESFDLEHFKTLLSEKTKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVL 203
Query: 171 CDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQ--IHGGG-- 226
DA Q+ +++Q D + S HK+ P GIG LY + +EA GGG
Sbjct: 204 VDACQSAPHYPLDVQLIDCDWLVASGHKMCAPTGIGFLYGKEE---ILEAMPPFFGGGEM 260
Query: 227 ----HEYG---------LRSGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNG 272
+GT A + + +G A L + M+ + L L+ G
Sbjct: 261 IAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQG 320
Query: 273 LMESIEEIYINGDMNNRIPHNLNISFNFIEGE-----SLLMAIKDIAVSSGSACTSASLE 327
L + I ++ + G SFN + G + ++ IA+ SG CT +
Sbjct: 321 LGQ-IPQLRLYGPNPKHGDRAALASFN-VAGLHASDVATMVDQDGIAIRSGHHCT----Q 374
Query: 328 PSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIK-LLKMKEFF 372
P + R + S R ++ + T++EID ++ L FF
Sbjct: 375 P--LHRLFDAS-----GSARASLYFYNTKEEIDLFLQSLQATIRFF 413
|
| >1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 Length = 420 | Back alignment and structure |
|---|
Score = 140 bits (355), Expect = 3e-35
Identities = 98/393 (24%), Positives = 158/393 (40%), Gaps = 56/393 (14%)
Query: 1409 VVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-DPREIIWTSGATESN 1467
V++K++ Y N H A A E RN+VA+ I A PREI++T ATE+
Sbjct: 44 VLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNATEAI 103
Query: 1468 NLAIKGAAHFYKKRGKHIITVQTEHKSVLDSI--------RKLENDGFRVTYLKPKNNGL 1519
NL K G IIT EH S ++ + G + +++
Sbjct: 104 NLVAYSWGMNNLKAGDEIITTVMEHHS---NLVPWQMVAAKT----GAVLKFVQLDEQES 156
Query: 1520 ITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDIN 1579
L + + T LV+V+ ++N +G + P EI +L G DA Q+ ++
Sbjct: 157 FDLEHFKTLLSEKTKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHYPLD 216
Query: 1580 IQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQ--IHGGG------HEYG----- 1626
+Q D + S HK+ P GIG LY + +EA GGG
Sbjct: 217 VQLIDCDWLVASGHKMCAPTGIGFLYGKEE---ILEAMPPFFGGGEMIAEVFFDHFTTGE 273
Query: 1627 ----LRSGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEIYINGD 1681
+GT A + + +G A L + M+ + L L+ GL + I ++ + G
Sbjct: 274 LPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQ-IPQLRLYGP 332
Query: 1682 MNNRIPHNLNISFNFIEGE-----SLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDE 1736
SFN + G + ++ IA+ SG CT +P + R +
Sbjct: 333 NPKHGDRAALASFN-VAGLHASDVATMVDQDGIAIRSGHHCT----QP--LHRLFDAS-- 383
Query: 1737 LAHSSIRFTIGRFTTEKEIDFTIK-LLKMKEFF 1768
S R ++ + T++EID ++ L FF
Sbjct: 384 ---GSARASLYFYNTKEEIDLFLQSLQATIRFF 413
|
| >1i7h_A Ferredoxin; 2Fe-2S,electron transport; 1.70A {Escherichia coli} SCOP: d.15.4.1 Length = 111 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 2e-35
Identities = 50/89 (56%), Positives = 64/89 (71%), Gaps = 4/89 (4%)
Query: 2514 ITIKPFYNMNLDEIKNGAIFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGF 2573
I I P ++ D GA+ NSG ++ DA L+N I IEHACEKSCAC TCH I+REGF
Sbjct: 4 IVILPHQDLCPD----GAVLEANSGETILDAALRNGIEIEHACEKSCACTTCHCIVREGF 59
Query: 2574 NEINKANEVEEDMLNKAWGLEENSRLSCQ 2602
+ + +++E E+DML+KAWGLE SRLSCQ
Sbjct: 60 DSLPESSEQEDDMLDKAWGLEPESRLSCQ 88
|
| >1i7h_A Ferredoxin; 2Fe-2S,electron transport; 1.70A {Escherichia coli} SCOP: d.15.4.1 Length = 111 | Back alignment and structure |
|---|
Score = 121 bits (307), Expect = 2e-32
Identities = 48/87 (55%), Positives = 62/87 (71%), Gaps = 4/87 (4%)
Query: 1118 ITIKPFYNMNLDEIKNGAIFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGF 1177
I I P ++ D GA+ NSG ++ DA L+N I IEHACEKSCAC TCH I+REGF
Sbjct: 4 IVILPHQDLCPD----GAVLEANSGETILDAALRNGIEIEHACEKSCACTTCHCIVREGF 59
Query: 1178 NEINKANEVEEDMLNKAWGLEENSRLS 1204
+ + +++E E+DML+KAWGLE SRLS
Sbjct: 60 DSLPESSEQEDDMLDKAWGLEPESRLS 86
|
| >2qq4_A Iron-sulfur cluster biosynthesis protein ISCU; zinc binding, iron-sulfur cluster binding, three conserved Cys, three beta strands; 1.85A {Thermus thermophilus} Length = 138 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 4e-35
Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)
Query: 375 YSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKTYG 434
Y E +LDHY++PRN GV + G P+CGD +++ + + I D +F+ G
Sbjct: 8 YREILLDHYQSPRNFGVLPQATKQAG---GMNPSCGDQVEVMVLLE-GDTIADIRFQGQG 63
Query: 435 CGSAIASSSLVTEWVKGKTLDEAMSIKNTDIAEEL 469
C + AS+SL+TE VKGK + EA+ + A +
Sbjct: 64 CAISTASASLMTEAVKGKKVAEALELSRKFQAMVV 98
|
| >2qq4_A Iron-sulfur cluster biosynthesis protein ISCU; zinc binding, iron-sulfur cluster binding, three conserved Cys, three beta strands; 1.85A {Thermus thermophilus} Length = 138 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 4e-35
Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)
Query: 1771 YSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKTYG 1830
Y E +LDHY++PRN GV + G P+CGD +++ + + I D +F+ G
Sbjct: 8 YREILLDHYQSPRNFGVLPQATKQAG---GMNPSCGDQVEVMVLLE-GDTIADIRFQGQG 63
Query: 1831 CGSAIASSSLVTEWVKGKTLDEAMSIKNTDIAEEL 1865
C + AS+SL+TE VKGK + EA+ + A +
Sbjct: 64 CAISTASASLMTEAVKGKKVAEALELSRKFQAMVV 98
|
| >3ah7_A [2Fe-2S]ferredoxin; [2Fe-2S] cluster, iron-sulfur cluster biosynthes pseudomonas, metal binding protein; 1.90A {Pseudomonas putida} Length = 113 | Back alignment and structure |
|---|
Score = 128 bits (323), Expect = 1e-34
Identities = 33/74 (44%), Positives = 46/74 (62%)
Query: 2529 NGAIFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVEEDMLN 2588
G G ++ + + I +E AC AC TCH I+R+GF+ + +A+E+EEDML+
Sbjct: 15 EGLTVEVKPGTNILELAHDHHIEMESACGGVKACTTCHCIVRKGFDSLEEADELEEDMLD 74
Query: 2589 KAWGLEENSRLSCQ 2602
KAWGLE SRL CQ
Sbjct: 75 KAWGLEAQSRLGCQ 88
|
| >3ah7_A [2Fe-2S]ferredoxin; [2Fe-2S] cluster, iron-sulfur cluster biosynthes pseudomonas, metal binding protein; 1.90A {Pseudomonas putida} Length = 113 | Back alignment and structure |
|---|
Score = 120 bits (302), Expect = 9e-32
Identities = 31/72 (43%), Positives = 44/72 (61%)
Query: 1133 NGAIFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVEEDMLN 1192
G G ++ + + I +E AC AC TCH I+R+GF+ + +A+E+EEDML+
Sbjct: 15 EGLTVEVKPGTNILELAHDHHIEMESACGGVKACTTCHCIVRKGFDSLEEADELEEDMLD 74
Query: 1193 KAWGLEENSRLS 1204
KAWGLE SRL
Sbjct: 75 KAWGLEAQSRLG 86
|
| >3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} Length = 406 | Back alignment and structure |
|---|
Score = 135 bits (342), Expect = 1e-33
Identities = 62/404 (15%), Positives = 130/404 (32%), Gaps = 69/404 (17%)
Query: 2 DYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREI 61
D A I V + R + H + ++ AR VA L+ ADP +
Sbjct: 31 DAPAGMLIPDSVATTVSTAFRRSGASTVGA-HPSARRSAAVLDAAREAVADLVNADPGGV 89
Query: 62 IWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDGFRVTYLK-PK 119
+ + +L + ++ G +I + + ++ + + G +V + +
Sbjct: 90 VLGADRAVLLSLLAEASSSRAGL-GYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAEVDI 148
Query: 120 NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGK 179
G + Q E I T LV+V + +G + + + +L G + D + A
Sbjct: 149 ETGELPTWQWESLISKSTRLVAVNSASGTLGGVTDLRAMTKLVHDVGALVVVDHSAAAPY 208
Query: 180 IDINIQNYKVDLMSFSAHKIYGPKGIGALYIRR---------------NPRTRIEAQIHG 224
++I+ D+++ +AH GP ++ R+E
Sbjct: 209 RLLDIRETDADVVTVNAHAWGGPPIGAMVFRDPSVMNSFGSVSTNPYATGPARLEI---- 264
Query: 225 GGHEYGLRSGTLATHQIVGMGEAFR-LARIEMKEELKRILF--------------LQKRL 269
G + G+ + LA ++ R + L
Sbjct: 265 ---------GVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSADAYLNRVFDYL 315
Query: 270 YNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGE-----SLLMAIKDI-AVSSGSACTS 323
L S+ + + G +IP +SF + +A I A+++ +
Sbjct: 316 MVSL-RSLPLVMLIGRPEAQIP---VVSFA-VHKVPADRVVQRLADNGILAIANTGSRV- 369
Query: 324 ASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK 367
VL ++ + ++T E+D ++ L
Sbjct: 370 ---LD--VLGVNDVG-----GAVTVGLAHYSTMAEVDQLVRALA 403
|
| >3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} Length = 406 | Back alignment and structure |
|---|
Score = 134 bits (339), Expect = 2e-33
Identities = 61/401 (15%), Positives = 129/401 (32%), Gaps = 69/401 (17%)
Query: 1401 ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWT 1460
A I V + R + H + ++ AR VA L+ ADP ++
Sbjct: 34 AGMLIPDSVATTVSTAFRRSGASTVGA-HPSARRSAAVLDAAREAVADLVNADPGGVVLG 92
Query: 1461 SGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDGFRVTYLK-PKNNG 1518
+ +L + ++ G +I + + ++ + + G +V + + G
Sbjct: 93 ADRAVLLSLLAEASSSRAGL-GYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAEVDIETG 151
Query: 1519 LITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDI 1578
+ Q E I T LV+V + +G + + + +L G + D + A +
Sbjct: 152 ELPTWQWESLISKSTRLVAVNSASGTLGGVTDLRAMTKLVHDVGALVVVDHSAAAPYRLL 211
Query: 1579 NIQNYKVDLMSFSAHKIYGPKGIGALYIRR---------------NPRTRIEAQIHGGGH 1623
+I+ D+++ +AH GP ++ R+E
Sbjct: 212 DIRETDADVVTVNAHAWGGPPIGAMVFRDPSVMNSFGSVSTNPYATGPARLEI------- 264
Query: 1624 EYGLRSGTLATHQIVGMGEAFR-LARIEMKEELKRILF--------------LQKRLYNG 1668
G + G+ + LA ++ R + L
Sbjct: 265 ------GVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSADAYLNRVFDYLMVS 318
Query: 1669 LMESIEEIYINGDMNNRIPHNLNISFNFIEGE-----SLLMAIKDI-AVSSGSACTSASL 1722
L S+ + + G +IP +SF + +A I A+++ +
Sbjct: 319 L-RSLPLVMLIGRPEAQIP---VVSFA-VHKVPADRVVQRLADNGILAIANTGSRV---- 369
Query: 1723 EPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK 1763
VL ++ + ++T E+D ++ L
Sbjct: 370 LD--VLGVNDVG-----GAVTVGLAHYSTMAEVDQLVRALA 403
|
| >1xjs_A NIFU-like protein; SR17, structure, autostructure, iron-sulfur, zinc, northeast structural genomics consortium, NESG; NMR {Bacillus subtilis} SCOP: d.224.1.2 PDB: 2azh_A Length = 147 | Back alignment and structure |
|---|
Score = 124 bits (314), Expect = 6e-33
Identities = 31/89 (34%), Positives = 56/89 (62%), Gaps = 5/89 (5%)
Query: 375 YSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKTYG 434
Y + ++DHY+NPRN GV + + P CGD ++L +K++ ++ DAKF+ G
Sbjct: 11 YRQVIMDHYKNPRNKGVLNDSI----VVDMNNPTCGDRIRLTMKLD-GDIVEDAKFEGEG 65
Query: 435 CGSAIASSSLVTEWVKGKTLDEAMSIKNT 463
C ++AS+S++T+ +KGK ++ A+S+
Sbjct: 66 CSISMASASMMTQAIKGKDIETALSMSKI 94
|
| >1xjs_A NIFU-like protein; SR17, structure, autostructure, iron-sulfur, zinc, northeast structural genomics consortium, NESG; NMR {Bacillus subtilis} SCOP: d.224.1.2 PDB: 2azh_A Length = 147 | Back alignment and structure |
|---|
Score = 124 bits (314), Expect = 6e-33
Identities = 31/89 (34%), Positives = 56/89 (62%), Gaps = 5/89 (5%)
Query: 1771 YSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKTYG 1830
Y + ++DHY+NPRN GV + + P CGD ++L +K++ ++ DAKF+ G
Sbjct: 11 YRQVIMDHYKNPRNKGVLNDSI----VVDMNNPTCGDRIRLTMKLD-GDIVEDAKFEGEG 65
Query: 1831 CGSAIASSSLVTEWVKGKTLDEAMSIKNT 1859
C ++AS+S++T+ +KGK ++ A+S+
Sbjct: 66 CSISMASASMMTQAIKGKDIETALSMSKI 94
|
| >1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* Length = 406 | Back alignment and structure |
|---|
Score = 132 bits (335), Expect = 8e-33
Identities = 87/407 (21%), Positives = 152/407 (37%), Gaps = 65/407 (15%)
Query: 2 DYSATT--PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-DP 58
D +A+ P +V+D + R + H A + +E R + I A
Sbjct: 28 DSAASAQKPS--QVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSA 85
Query: 59 REIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSI--------RKLENDG 110
E+++ G TE NL + + G +II Q EH + +I R G
Sbjct: 86 EELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHA---NIVPWQMLCARV----G 138
Query: 111 FRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFH 170
+ + +G + L L T L+++ V+N +G P+ E+ L G
Sbjct: 139 AELRVIPLNPDGTLQLETLPTLFDEKTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVL 198
Query: 171 CDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQ--IHGGGH- 227
D AQAV +++Q D FS HK+YGP GIG LY++ ++ GGG
Sbjct: 199 VDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKEA---LLQEMPPWEGGGSM 255
Query: 228 ----EYGLRS-----------GTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYN 271
+ GT T I+G+G A ++ + + + L +
Sbjct: 256 IATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALS 315
Query: 272 GLMESIEEIYINGDMNNRIPHNLNISFNFIEGE-----SLLMAIKDIAVSSGSACTSASL 326
L + ++ + G NR+ I+FN + + IAV +G C
Sbjct: 316 QLES-VPDLTLYGP-QNRLG---VIAFN-LGKHHAYDVGSFLDNYGIAVRTGHHCA---- 365
Query: 327 EPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIK-LLKMKEFF 372
P ++ + R ++ + T +E+D + L ++
Sbjct: 366 MP--LMAYYNVP-----AMCRASLAMYNTHEEVDRLVTGLQRIHRLL 405
|
| >1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* Length = 406 | Back alignment and structure |
|---|
Score = 132 bits (334), Expect = 1e-32
Identities = 84/394 (21%), Positives = 146/394 (37%), Gaps = 61/394 (15%)
Query: 1409 VVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-DPREIIWTSGATESN 1467
V+D + R + H A + +E R + I A E+++ G TE
Sbjct: 39 VIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGI 98
Query: 1468 NLAIKGAAHFYKKRGKHIITVQTEHKSVLDSI--------RKLENDGFRVTYLKPKNNGL 1519
NL + + G +II Q EH + +I R G + + +G
Sbjct: 99 NLVANSWGNSNVRAGDNIIISQMEHHA---NIVPWQMLCARV----GAELRVIPLNPDGT 151
Query: 1520 ITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDIN 1579
+ L L T L+++ V+N +G P+ E+ L G D AQAV ++
Sbjct: 152 LQLETLPTLFDEKTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHHPVD 211
Query: 1580 IQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQ--IHGGGH-----EYGLRS--- 1629
+Q D FS HK+YGP GIG LY++ ++ GGG +
Sbjct: 212 VQALDCDFYVFSGHKLYGPTGIGILYVKEA---LLQEMPPWEGGGSMIATVSLSEGTTWT 268
Query: 1630 --------GTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEIYING 1680
GT T I+G+G A ++ + + + L + L + ++ + G
Sbjct: 269 KAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLES-VPDLTLYG 327
Query: 1681 DMNNRIPHNLNISFNFIEGE-----SLLMAIKDIAVSSGSACTSASLEPSYVLRALGCND 1735
NR+ I+FN + + IAV +G C P ++
Sbjct: 328 P-QNRLG---VIAFN-LGKHHAYDVGSFLDNYGIAVRTGHHCA----MP--LMAYYNVP- 375
Query: 1736 ELAHSSIRFTIGRFTTEKEIDFTIK-LLKMKEFF 1768
+ R ++ + T +E+D + L ++
Sbjct: 376 ----AMCRASLAMYNTHEEVDRLVTGLQRIHRLL 405
|
| >2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe} Length = 103 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 2e-28
Identities = 35/68 (51%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 2536 NSGISLCDALLKNSIFIEHACEKSCACATCHVIIR-EGFNEINKANEVEEDMLNKAWGLE 2594
N G S+ D N+I +E ACE S AC+TCHVI+ E + ++ E EEDML+ A+GLE
Sbjct: 21 NEGDSILDLAHANNIDLEGACEGSVACSTCHVIVDPEHYELLDPPEEDEEDMLDLAFGLE 80
Query: 2595 ENSRLSCQ 2602
E SRL CQ
Sbjct: 81 ETSRLGCQ 88
|
| >2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe} Length = 103 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 1e-25
Identities = 33/66 (50%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 1140 NSGISLCDALLKNSIFIEHACEKSCACATCHVIIR-EGFNEINKANEVEEDMLNKAWGLE 1198
N G S+ D N+I +E ACE S AC+TCHVI+ E + ++ E EEDML+ A+GLE
Sbjct: 21 NEGDSILDLAHANNIDLEGACEGSVACSTCHVIVDPEHYELLDPPEEDEEDMLDLAFGLE 80
Query: 1199 ENSRLS 1204
E SRL
Sbjct: 81 ETSRLG 86
|
| >2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport, iron-sulfur cluster biogenesis; 1.70A {Homo sapiens} Length = 109 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 2e-26
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 2536 NSGISLCDALLKNSIFIEHACEKSCACATCHVIIREG-FNEINKANEVEEDMLNKAWGLE 2594
G ++ ++ + +E ACE S AC+TCHV + E + + E E+DML+ A L+
Sbjct: 23 RVGDNVLHLAQRHGVDLEGACEASLACSTCHVYVSEDHLDLLPPPEEREDDMLDMAPLLQ 82
Query: 2595 ENSRLSCQ 2602
ENSRL CQ
Sbjct: 83 ENSRLGCQ 90
|
| >2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport, iron-sulfur cluster biogenesis; 1.70A {Homo sapiens} Length = 109 | Back alignment and structure |
|---|
Score = 96.1 bits (240), Expect = 2e-23
Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 1140 NSGISLCDALLKNSIFIEHACEKSCACATCHVIIREG-FNEINKANEVEEDMLNKAWGLE 1198
G ++ ++ + +E ACE S AC+TCHV + E + + E E+DML+ A L+
Sbjct: 23 RVGDNVLHLAQRHGVDLEGACEASLACSTCHVYVSEDHLDLLPPPEEREDDMLDMAPLLQ 82
Query: 1199 ENSRLS 1204
ENSRL
Sbjct: 83 ENSRLG 88
|
| >2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C* Length = 108 | Back alignment and structure |
|---|
Score = 103 bits (260), Expect = 4e-26
Identities = 28/70 (40%), Positives = 44/70 (62%), Gaps = 3/70 (4%)
Query: 2536 NSGISLCDALLKNSIFIEH--ACEKSCACATCHVIIREG-FNEINKANEVEEDMLNKAWG 2592
G SL D +++N++ I+ ACE + AC+TCH+I + F ++ + E DML+ A+G
Sbjct: 24 KIGDSLLDVVVQNNLDIDGFGACEGTLACSTCHLIFEQHIFEKLEAITDEENDMLDLAYG 83
Query: 2593 LEENSRLSCQ 2602
L + SRL CQ
Sbjct: 84 LTDRSRLGCQ 93
|
| >2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C* Length = 108 | Back alignment and structure |
|---|
Score = 95.8 bits (239), Expect = 3e-23
Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 3/68 (4%)
Query: 1140 NSGISLCDALLKNSIFIEH--ACEKSCACATCHVIIREG-FNEINKANEVEEDMLNKAWG 1196
G SL D +++N++ I+ ACE + AC+TCH+I + F ++ + E DML+ A+G
Sbjct: 24 KIGDSLLDVVVQNNLDIDGFGACEGTLACSTCHLIFEQHIFEKLEAITDEENDMLDLAYG 83
Query: 1197 LEENSRLS 1204
L + SRL
Sbjct: 84 LTDRSRLG 91
|
| >3n9z_C Adrenodoxin; cytochrome P450, 22-hydroxycholesterol, cholesterol SIDE CHA cleavage, structural genomics; HET: HEM HC9; 2.17A {Homo sapiens} PDB: 3na1_C* 3p1m_A* 1l6u_A 1l6v_A 1e6e_B* 1cje_A Length = 123 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 8e-26
Identities = 27/70 (38%), Positives = 45/70 (64%), Gaps = 3/70 (4%)
Query: 2536 NSGISLCDALLKNSIFIEH--ACEKSCACATCHVIIREG-FNEINKANEVEEDMLNKAWG 2592
G SL D +++N++ I+ ACE + AC+TCH+I + + +++ + E DML+ A+G
Sbjct: 23 KVGDSLLDVVVENNLDIDGFGACEGTLACSTCHLIFEDHIYEKLDAITDEENDMLDLAYG 82
Query: 2593 LEENSRLSCQ 2602
L + SRL CQ
Sbjct: 83 LTDRSRLGCQ 92
|
| >3n9z_C Adrenodoxin; cytochrome P450, 22-hydroxycholesterol, cholesterol SIDE CHA cleavage, structural genomics; HET: HEM HC9; 2.17A {Homo sapiens} PDB: 3na1_C* 3p1m_A* 1l6u_A 1l6v_A 1e6e_B* 1cje_A Length = 123 | Back alignment and structure |
|---|
Score = 95.5 bits (238), Expect = 6e-23
Identities = 25/68 (36%), Positives = 43/68 (63%), Gaps = 3/68 (4%)
Query: 1140 NSGISLCDALLKNSIFIEH--ACEKSCACATCHVIIREG-FNEINKANEVEEDMLNKAWG 1196
G SL D +++N++ I+ ACE + AC+TCH+I + + +++ + E DML+ A+G
Sbjct: 23 KVGDSLLDVVVENNLDIDGFGACEGTLACSTCHLIFEDHIYEKLDAITDEENDMLDLAYG 82
Query: 1197 LEENSRLS 1204
L + SRL
Sbjct: 83 LTDRSRLG 90
|
| >1r94_A Protein YFHF; tetrameric, beta barrel, iron-sulfur cluster protein, pseudo-symmetric motifs, metal transport; 2.30A {Escherichia coli} SCOP: b.124.1.1 PDB: 1r95_A 1s98_A Length = 118 | Back alignment and structure |
|---|
Score = 97.7 bits (244), Expect = 8e-24
Identities = 34/79 (43%), Positives = 48/79 (60%), Gaps = 8/79 (10%)
Query: 458 MSIKNTDIAEELVTKKAAKYINKYIQKRGKGIGLRLGVYNRGCSGLSYKLEYVDEKRKED 517
MSI ++ AA +N ++ RGKG GLRLGV GCSG++Y LE+VDE ED
Sbjct: 1 MSIT--------LSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTPED 52
Query: 518 QVFKLNGVQIFINEKDLLY 536
VF+ GV++ ++ K L +
Sbjct: 53 IVFEDKGVKVVVDGKSLQF 71
|
| >1r94_A Protein YFHF; tetrameric, beta barrel, iron-sulfur cluster protein, pseudo-symmetric motifs, metal transport; 2.30A {Escherichia coli} SCOP: b.124.1.1 PDB: 1r95_A 1s98_A Length = 118 | Back alignment and structure |
|---|
Score = 97.7 bits (244), Expect = 8e-24
Identities = 34/79 (43%), Positives = 48/79 (60%), Gaps = 8/79 (10%)
Query: 1854 MSIKNTDIAEELVTKKAAKYINKYIQKRGKGIGLRLGVYNRGCSGLSYKLEYVDEKRKED 1913
MSI ++ AA +N ++ RGKG GLRLGV GCSG++Y LE+VDE ED
Sbjct: 1 MSIT--------LSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTPED 52
Query: 1914 QVFKLNGVQIFINEKDLLY 1932
VF+ GV++ ++ K L +
Sbjct: 53 IVFEDKGVKVVVDGKSLQF 71
|
| >1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 Length = 416 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 1e-23
Identities = 50/334 (14%), Positives = 110/334 (32%), Gaps = 48/334 (14%)
Query: 12 RVVDKMIPYLRVQFGNPASRNHIY-GWTAEKAIEKARNEVAQLIYADPREIIWTSGATES 70
+ + + ++GN R+ GW E+ N +A LI A E++ T + +
Sbjct: 43 AALARAQAVIAEEWGNGLIRSWNSAGWRD--LSERLGNRLATLIGARDGEVVVTDTTSIN 100
Query: 71 NNLAIKGAAHFYK------KRGKHIITVQTEHKS---VLDSIRKLENDGFRVTYLKPKNN 121
+ + + I+T + + + + + + G+ + +
Sbjct: 101 LFKV---LSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLRLVDS--- 154
Query: 122 GLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKID 181
+L + I DT +V + VN + G + + + L G + D A + G +
Sbjct: 155 ----PEELPQAIDQDTAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGAVP 210
Query: 182 INIQNYKVDLMSFSAHKIY--GPKGIGALYIRRNPRTRIEAQIHGG-GHE---------- 228
+++ D +K GP +++ + + G GH
Sbjct: 211 VDLHQAGADYAIGCTYKYLNGGPGSQAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYE 270
Query: 229 -----YGLRSGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEIYI 282
GT + + A+ +M ++ L L + + +
Sbjct: 271 PSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQRCAAHEL 330
Query: 283 N----GDMNNRIPHNLNISFNFIEGESLLMAIKD 312
+ R H +SF EG +++ A+ D
Sbjct: 331 TLVTPREHAKRGSH---VSFEHPEGYAVIQALID 361
|
| >1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 Length = 416 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 1e-23
Identities = 50/334 (14%), Positives = 110/334 (32%), Gaps = 48/334 (14%)
Query: 1408 RVVDKMIPYLRVQFGNPASRNHIY-GWTAEKAIEKARNEVAQLIYADPREIIWTSGATES 1466
+ + + ++GN R+ GW E+ N +A LI A E++ T + +
Sbjct: 43 AALARAQAVIAEEWGNGLIRSWNSAGWRD--LSERLGNRLATLIGARDGEVVVTDTTSIN 100
Query: 1467 NNLAIKGAAHFYK------KRGKHIITVQTEHKS---VLDSIRKLENDGFRVTYLKPKNN 1517
+ + + I+T + + + + + + G+ + +
Sbjct: 101 LFKV---LSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLRLVDS--- 154
Query: 1518 GLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKID 1577
+L + I DT +V + VN + G + + + L G + D A + G +
Sbjct: 155 ----PEELPQAIDQDTAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGAVP 210
Query: 1578 INIQNYKVDLMSFSAHKIY--GPKGIGALYIRRNPRTRIEAQIHGG-GHE---------- 1624
+++ D +K GP +++ + + G GH
Sbjct: 211 VDLHQAGADYAIGCTYKYLNGGPGSQAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYE 270
Query: 1625 -----YGLRSGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEIYI 1678
GT + + A+ +M ++ L L + + +
Sbjct: 271 PSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQRCAAHEL 330
Query: 1679 N----GDMNNRIPHNLNISFNFIEGESLLMAIKD 1708
+ R H +SF EG +++ A+ D
Sbjct: 331 TLVTPREHAKRGSH---VSFEHPEGYAVIQALID 361
|
| >2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A Length = 320 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 2e-23
Identities = 53/360 (14%), Positives = 114/360 (31%), Gaps = 45/360 (12%)
Query: 640 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 699
+ ID G+TN + ++ S + + + G K ++ +
Sbjct: 3 VFIDDGSTNIKLQWQESDGT--------IKQHISPNSFKREWAVSFGDKKVFNYTLNGEQ 54
Query: 700 TISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAEN 759
A NI + Y N + H SG+ E+ I TL
Sbjct: 55 YSFDPISPDAVVTTNIA---WQYSDVNVVAVHHALLTSGL-PVSEVD--IVCTLPLTEYY 108
Query: 760 AVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFEGI 819
NN+ I + +++ T N + ++++ E A + + + +
Sbjct: 109 DRNNQPNTENI--ERKKANFRKKITLNGGDTFTIKDVKVMPESIPAGYEVLQELDELDSL 166
Query: 820 FAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLSYKD 879
+ DLGG T DIS + + + + GDS+LG + +
Sbjct: 167 LII-DLGGTTLDISQV--MGKLSGISKIYGDSSLGVSLVTSAVKDAL------------- 210
Query: 880 VNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNRTILLSSKA 939
+ S + + + D + I+ + +I +N + +
Sbjct: 211 --------SLARTKGSSYLADDIIIHRKDNNYLKQRINDENKISIVTEAMNEALRKLEQR 262
Query: 940 LMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSI---DPDKAVVFGAAIQAN 996
+++ +V+++GG + I + V + + +V G + N
Sbjct: 263 VLNTLNEFSGYTHVMVIGGGAEL--ICDAVKKHTQIRDERFFKTNNSQYDLVNGMYLIGN 320
|
| >2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A Length = 320 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 2e-23
Identities = 53/360 (14%), Positives = 114/360 (31%), Gaps = 45/360 (12%)
Query: 2036 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 2095
+ ID G+TN + ++ S + + + G K ++ +
Sbjct: 3 VFIDDGSTNIKLQWQESDGT--------IKQHISPNSFKREWAVSFGDKKVFNYTLNGEQ 54
Query: 2096 TISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAEN 2155
A NI + Y N + H SG+ E+ I TL
Sbjct: 55 YSFDPISPDAVVTTNIA---WQYSDVNVVAVHHALLTSGL-PVSEVD--IVCTLPLTEYY 108
Query: 2156 AVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFEGI 2215
NN+ I + +++ T N + ++++ E A + + + +
Sbjct: 109 DRNNQPNTENI--ERKKANFRKKITLNGGDTFTIKDVKVMPESIPAGYEVLQELDELDSL 166
Query: 2216 FAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLSYKD 2275
+ DLGG T DIS + + + + GDS+LG + +
Sbjct: 167 LII-DLGGTTLDISQV--MGKLSGISKIYGDSSLGVSLVTSAVKDAL------------- 210
Query: 2276 VNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNRTILLSSKA 2335
+ S + + + D + I+ + +I +N + +
Sbjct: 211 --------SLARTKGSSYLADDIIIHRKDNNYLKQRINDENKISIVTEAMNEALRKLEQR 262
Query: 2336 LMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSI---DPDKAVVFGAAIQAN 2392
+++ +V+++GG + I + V + + +V G + N
Sbjct: 263 VLNTLNEFSGYTHVMVIGGGAEL--ICDAVKKHTQIRDERFFKTNNSQYDLVNGMYLIGN 320
|
| >2d2a_A SUFA protein; iron-sulfur cluster, iron, ISCA, YADR, metal transport; 2.70A {Escherichia coli} Length = 145 | Back alignment and structure |
|---|
Score = 95.9 bits (239), Expect = 7e-23
Identities = 22/67 (32%), Positives = 41/67 (61%)
Query: 470 VTKKAAKYINKYIQKRGKGIGLRLGVYNRGCSGLSYKLEYVDEKRKEDQVFKLNGVQIFI 529
+T AA +I + + K+ +G+RLGV GC+G Y L+ V E K+D +F+ +G ++F+
Sbjct: 43 LTPAAAIHIRELVAKQPGMVGVRLGVKQTGCAGFGYVLDSVSEPDKDDLLFEHDGAKLFV 102
Query: 530 NEKDLLY 536
+ + +
Sbjct: 103 PLQAMPF 109
|
| >2d2a_A SUFA protein; iron-sulfur cluster, iron, ISCA, YADR, metal transport; 2.70A {Escherichia coli} Length = 145 | Back alignment and structure |
|---|
Score = 95.9 bits (239), Expect = 7e-23
Identities = 22/67 (32%), Positives = 41/67 (61%)
Query: 1866 VTKKAAKYINKYIQKRGKGIGLRLGVYNRGCSGLSYKLEYVDEKRKEDQVFKLNGVQIFI 1925
+T AA +I + + K+ +G+RLGV GC+G Y L+ V E K+D +F+ +G ++F+
Sbjct: 43 LTPAAAIHIRELVAKQPGMVGVRLGVKQTGCAGFGYVLDSVSEPDKDDLLFEHDGAKLFV 102
Query: 1926 NEKDLLY 1932
+ + +
Sbjct: 103 PLQAMPF 109
|
| >3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid} Length = 272 | Back alignment and structure |
|---|
Score = 99.2 bits (248), Expect = 1e-22
Identities = 48/258 (18%), Positives = 88/258 (34%), Gaps = 50/258 (19%)
Query: 738 GIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLR 797
G+ + QI LK E + + +F A +P + + AGL ++
Sbjct: 65 GLVVDYIGAIQIVRELKAKVERLLGSELFQAATAIPPGTVGRNAEACGHVVAGAGLELVT 124
Query: 798 LLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDD 857
L++EP +AA A ++ V D+GGGT I++++ D GG
Sbjct: 125 LVDEPVAAARALGINDG------IVVDIGGGTTGIAVIEKGKITAT-----FDEPTGGTH 173
Query: 858 FDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITID 917
L K+ +++ + IK+ S + V+ +K+ I
Sbjct: 174 LSLVLAGSY-------KIPFEE-------AETIKKDFSRHREIMRVVRPVIEKMALIV-- 217
Query: 918 MKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTL 977
+ + + + T+ V +VGG+ + E S F +
Sbjct: 218 -------------------KEVIKNYDQTLP----VYVVGGTAYLTGFSEEFSRFLGKEV 254
Query: 978 LTSIDPDKAVVFGAAIQA 995
I P G A+
Sbjct: 255 QVPIHPLLVTPLGIALFG 272
|
| >3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid} Length = 272 | Back alignment and structure |
|---|
Score = 99.2 bits (248), Expect = 1e-22
Identities = 48/258 (18%), Positives = 88/258 (34%), Gaps = 50/258 (19%)
Query: 2134 GIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLR 2193
G+ + QI LK E + + +F A +P + + AGL ++
Sbjct: 65 GLVVDYIGAIQIVRELKAKVERLLGSELFQAATAIPPGTVGRNAEACGHVVAGAGLELVT 124
Query: 2194 LLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDD 2253
L++EP +AA A ++ V D+GGGT I++++ D GG
Sbjct: 125 LVDEPVAAARALGINDG------IVVDIGGGTTGIAVIEKGKITAT-----FDEPTGGTH 173
Query: 2254 FDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITID 2313
L K+ +++ + IK+ S + V+ +K+ I
Sbjct: 174 LSLVLAGSY-------KIPFEE-------AETIKKDFSRHREIMRVVRPVIEKMALIV-- 217
Query: 2314 MKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTL 2373
+ + + + T+ V +VGG+ + E S F +
Sbjct: 218 -------------------KEVIKNYDQTLP----VYVVGGTAYLTGFSEEFSRFLGKEV 254
Query: 2374 LTSIDPDKAVVFGAAIQA 2391
I P G A+
Sbjct: 255 QVPIHPLLVTPLGIALFG 272
|
| >3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur, metal-binding, electron transport; 2.01A {Rhodopseudomonas palustris} Length = 126 | Back alignment and structure |
|---|
Score = 90.5 bits (225), Expect = 3e-21
Identities = 27/69 (39%), Positives = 43/69 (62%), Gaps = 2/69 (2%)
Query: 2536 NSGISLCDALLKNSI-FIEHACEKSCACATCHVIIREG-FNEINKANEVEEDMLNKAWGL 2593
G ++ +A ++N+I +E C +CACATCHV + E ++ + +EEDML+ + +
Sbjct: 39 EEGATVMEAAIRNAIPGVEAECGGACACATCHVYVDEAWREKVGGPSPMEEDMLDFGYDV 98
Query: 2594 EENSRLSCQ 2602
NSRLSCQ
Sbjct: 99 RPNSRLSCQ 107
|
| >3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur, metal-binding, electron transport; 2.01A {Rhodopseudomonas palustris} Length = 126 | Back alignment and structure |
|---|
Score = 82.4 bits (204), Expect = 3e-18
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Query: 1140 NSGISLCDALLKNSI-FIEHACEKSCACATCHVIIREG-FNEINKANEVEEDMLNKAWGL 1197
G ++ +A ++N+I +E C +CACATCHV + E ++ + +EEDML+ + +
Sbjct: 39 EEGATVMEAAIRNAIPGVEAECGGACACATCHVYVDEAWREKVGGPSPMEEDMLDFGYDV 98
Query: 1198 EENSRLS 1204
NSRLS
Sbjct: 99 RPNSRLS 105
|
| >3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} Length = 104 | Back alignment and structure |
|---|
Score = 87.6 bits (218), Expect = 2e-20
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 2537 SGISLCDALLKNSI-FIEHACEKSCACATCHVIIREG-FNEINKANEVEEDMLNKAWGLE 2594
G+SL +AL I + C C+CATCHV++ + + + E D+L+ +
Sbjct: 19 PGLSLMEALRDAGIDELLALCGGCCSCATCHVLVAPAFADRLPALSGDENDLLDSSDHRT 78
Query: 2595 ENSRLSCQ 2602
+SRLSCQ
Sbjct: 79 PHSRLSCQ 86
|
| >3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} Length = 104 | Back alignment and structure |
|---|
Score = 79.5 bits (197), Expect = 1e-17
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 1141 SGISLCDALLKNSI-FIEHACEKSCACATCHVIIREG-FNEINKANEVEEDMLNKAWGLE 1198
G+SL +AL I + C C+CATCHV++ + + + E D+L+ +
Sbjct: 19 PGLSLMEALRDAGIDELLALCGGCCSCATCHVLVAPAFADRLPALSGDENDLLDSSDHRT 78
Query: 1199 ENSRLS 1204
+SRLS
Sbjct: 79 PHSRLS 84
|
| >1b9r_A Protein (terpredoxin); structure from molmol, ferredoxin; NMR {Pseudomonas SP} SCOP: d.15.4.1 Length = 105 | Back alignment and structure |
|---|
Score = 86.5 bits (215), Expect = 4e-20
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 2538 GISLCDALLKNSI-FIEHACEKSCACATCHVIIREG-FNEINKANEVEEDMLNKA-WGLE 2594
G SL + +N + I C SC CATC + I + + +AN E D+L +
Sbjct: 20 GQSLMEVATQNGVPGIVAECGGSCVCATCRIEIEDAWVEIVGEANPDENDLLQSTGEPMT 79
Query: 2595 ENSRLSCQ 2602
+RLSCQ
Sbjct: 80 AGTRLSCQ 87
|
| >1b9r_A Protein (terpredoxin); structure from molmol, ferredoxin; NMR {Pseudomonas SP} SCOP: d.15.4.1 Length = 105 | Back alignment and structure |
|---|
Score = 78.0 bits (193), Expect = 4e-17
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 1142 GISLCDALLKNSI-FIEHACEKSCACATCHVIIREG-FNEINKANEVEEDMLNKA-WGLE 1198
G SL + +N + I C SC CATC + I + + +AN E D+L +
Sbjct: 20 GQSLMEVATQNGVPGIVAECGGSCVCATCRIEIEDAWVEIVGEANPDENDLLQSTGEPMT 79
Query: 1199 ENSRLS 1204
+RLS
Sbjct: 80 AGTRLS 85
|
| >1xlq_A Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidoreductase; 1.45A {Pseudomonas putida} SCOP: d.15.4.1 PDB: 1xlp_A 1oqr_A 1r7s_A 1pdx_A 1yji_A 1yjj_A 1oqq_A 1xln_A 1xlo_A 3lb8_C* 1put_A 1gpx_A Length = 106 | Back alignment and structure |
|---|
Score = 86.5 bits (215), Expect = 5e-20
Identities = 29/68 (42%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 2538 GISLCDALLKNSIF-IEHACEKSCACATCHVIIREG-FNEINKANEVEEDMLNK-AWGLE 2594
G+SL A + N I+ I C S +CATCHV + E +++ ANE E ML L+
Sbjct: 20 GVSLMQAAVSNGIYDIVGDCGGSASCATCHVYVNEAFTDKVPAANEREIGMLESVTAELK 79
Query: 2595 ENSRLSCQ 2602
NSRL CQ
Sbjct: 80 PNSRLCCQ 87
|
| >1xlq_A Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidoreductase; 1.45A {Pseudomonas putida} SCOP: d.15.4.1 PDB: 1xlp_A 1oqr_A 1r7s_A 1pdx_A 1yji_A 1yjj_A 1oqq_A 1xln_A 1xlo_A 3lb8_C* 1put_A 1gpx_A Length = 106 | Back alignment and structure |
|---|
Score = 78.0 bits (193), Expect = 4e-17
Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 1142 GISLCDALLKNSIF-IEHACEKSCACATCHVIIREG-FNEINKANEVEEDMLNK-AWGLE 1198
G+SL A + N I+ I C S +CATCHV + E +++ ANE E ML L+
Sbjct: 20 GVSLMQAAVSNGIYDIVGDCGGSASCATCHVYVNEAFTDKVPAANEREIGMLESVTAELK 79
Query: 1199 ENSRLS 1204
NSRL
Sbjct: 80 PNSRLC 85
|
| >1uwm_A Ferredoxin VI, FDVI; electron transport, metal-binding, iron-sulfur, iron, 2Fe-2S; 2.0A {Rhodobacter capsulatus} SCOP: d.15.4.1 PDB: 1e9m_A Length = 106 | Back alignment and structure |
|---|
Score = 84.2 bits (209), Expect = 3e-19
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 2538 GISLCDALLKNSI-FIEHACEKSCACATCHVIIREG-FNEINKANEVEEDMLNKAWGL-E 2594
G+++ +A N + I+ C +CAC+TCH + +++ KA E DM++ A+
Sbjct: 20 GLTVMEAARDNGVPGIDADCGGACACSTCHAYVDPAWVDKLPKALPTETDMIDFAYEPNP 79
Query: 2595 ENSRLSCQ 2602
SRL+CQ
Sbjct: 80 ATSRLTCQ 87
|
| >1uwm_A Ferredoxin VI, FDVI; electron transport, metal-binding, iron-sulfur, iron, 2Fe-2S; 2.0A {Rhodobacter capsulatus} SCOP: d.15.4.1 PDB: 1e9m_A Length = 106 | Back alignment and structure |
|---|
Score = 75.7 bits (187), Expect = 2e-16
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 1142 GISLCDALLKNSI-FIEHACEKSCACATCHVIIREG-FNEINKANEVEEDMLNKAWGL-E 1198
G+++ +A N + I+ C +CAC+TCH + +++ KA E DM++ A+
Sbjct: 20 GLTVMEAARDNGVPGIDADCGGACACSTCHAYVDPAWVDKLPKALPTETDMIDFAYEPNP 79
Query: 1199 ENSRLS 1204
SRL+
Sbjct: 80 ATSRLT 85
|
| >1x0g_A ISCA; [2Fe-2S], biosynthesis, cyanobacteria, domain swapping, Fe- S cluster, iron, iron-sulfur cluster protein, scaffold, sulfur; 2.50A {Thermosynechococcus elongatus} Length = 112 | Back alignment and structure |
|---|
Score = 83.4 bits (207), Expect = 6e-19
Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 3/70 (4%)
Query: 470 VTKKAAKYINKYIQ---KRGKGIGLRLGVYNRGCSGLSYKLEYVDEKRKEDQVFKLNGVQ 526
+T A + + + +RG+ LR+ V C Y L V E + D + + G
Sbjct: 4 LTPAAIQELERLQTHGVRRGQAAILRIQVQPSECGDWRYDLALVAEPKPTDLLTQSQGWT 63
Query: 527 IFINEKDLLY 536
I I +
Sbjct: 64 IAIAAEAAEL 73
|
| >1x0g_A ISCA; [2Fe-2S], biosynthesis, cyanobacteria, domain swapping, Fe- S cluster, iron, iron-sulfur cluster protein, scaffold, sulfur; 2.50A {Thermosynechococcus elongatus} Length = 112 | Back alignment and structure |
|---|
Score = 83.4 bits (207), Expect = 6e-19
Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 3/70 (4%)
Query: 1866 VTKKAAKYINKYIQ---KRGKGIGLRLGVYNRGCSGLSYKLEYVDEKRKEDQVFKLNGVQ 1922
+T A + + + +RG+ LR+ V C Y L V E + D + + G
Sbjct: 4 LTPAAIQELERLQTHGVRRGQAAILRIQVQPSECGDWRYDLALVAEPKPTDLLTQSQGWT 63
Query: 1923 IFINEKDLLY 1932
I I +
Sbjct: 64 IAIAAEAAEL 73
|
| >1l5p_A Ferredoxin; [2Fe-2S] cluster, electron transfer, iron-sulfur protein, metalloprotein, oxidoreductase; 2.20A {Trichomonas vaginalis} SCOP: d.15.4.1 Length = 93 | Back alignment and structure |
|---|
Score = 78.0 bits (193), Expect = 3e-17
Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 6/68 (8%)
Query: 2536 NSGISLCDALLKNSIF-IEHACEKSCACATCHVIIREGFNEINKANEVEEDMLNKAWGLE 2594
+L L + + + C+ + AC C K E+D
Sbjct: 17 EDDQTLFTVLTEAGLMSADDTCQGNKACGKCICKH-----VSGKVAAAEDDEKEFLEDQP 71
Query: 2595 ENSRLSCQ 2602
N+RL+C
Sbjct: 72 ANARLACA 79
|
| >1l5p_A Ferredoxin; [2Fe-2S] cluster, electron transfer, iron-sulfur protein, metalloprotein, oxidoreductase; 2.20A {Trichomonas vaginalis} SCOP: d.15.4.1 Length = 93 | Back alignment and structure |
|---|
Score = 69.9 bits (172), Expect = 2e-14
Identities = 12/66 (18%), Positives = 21/66 (31%), Gaps = 6/66 (9%)
Query: 1140 NSGISLCDALLKNSIF-IEHACEKSCACATCHVIIREGFNEINKANEVEEDMLNKAWGLE 1198
+L L + + + C+ + AC C K E+D
Sbjct: 17 EDDQTLFTVLTEAGLMSADDTCQGNKACGKCICKH-----VSGKVAAAEDDEKEFLEDQP 71
Query: 1199 ENSRLS 1204
N+RL+
Sbjct: 72 ANARLA 77
|
| >2k4z_A DSRR; ISCA/SUFA/HESB like fold, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Allochromatium vinosum} Length = 125 | Back alignment and structure |
|---|
Score = 77.8 bits (192), Expect = 1e-16
Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 470 VTKKAAKYINKYIQKRG-KGIGLRLGVYNRGCSGLSYKLEYVDEKRKEDQVFKLNGVQIF 528
+T AA+ + K ++ G +G+ LRL + Y++ + D+ ++D GV+I
Sbjct: 25 LTPAAAEQVLKAAKQGGTEGMCLRLAAGRNPDGSIDYRMGF-DDLTEDDIRLTSEGVEIV 83
Query: 529 INEKDLLY 536
I +
Sbjct: 84 IAPDYVSL 91
|
| >2k4z_A DSRR; ISCA/SUFA/HESB like fold, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Allochromatium vinosum} Length = 125 | Back alignment and structure |
|---|
Score = 77.8 bits (192), Expect = 1e-16
Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 1866 VTKKAAKYINKYIQKRG-KGIGLRLGVYNRGCSGLSYKLEYVDEKRKEDQVFKLNGVQIF 1924
+T AA+ + K ++ G +G+ LRL + Y++ + D+ ++D GV+I
Sbjct: 25 LTPAAAEQVLKAAKQGGTEGMCLRLAAGRNPDGSIDYRMGF-DDLTEDDIRLTSEGVEIV 83
Query: 1925 INEKDLLY 1932
I +
Sbjct: 84 IAPDYVSL 91
|
| >1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1 Length = 171 | Back alignment and structure |
|---|
Score = 77.3 bits (190), Expect = 4e-16
Identities = 27/86 (31%), Positives = 50/86 (58%)
Query: 539 DNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKLNGIDLNTKLNLNFSHDFLE 598
D F S+ +Q A+V+ S +N+A+ L+ P +R+ YL L+G DL ++ + FL
Sbjct: 34 DKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLHGFDLASEQHTVRDTAFLM 93
Query: 599 QQMKWRETLSIIKNKKDKVKFMALLQ 624
+Q++ RE L I+ KD+ + + ++
Sbjct: 94 EQLELREELDEIEQAKDEARLESFIK 119
|
| >1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1 Length = 171 | Back alignment and structure |
|---|
Score = 77.3 bits (190), Expect = 4e-16
Identities = 27/86 (31%), Positives = 50/86 (58%)
Query: 1935 DNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKLNGIDLNTKLNLNFSHDFLE 1994
D F S+ +Q A+V+ S +N+A+ L+ P +R+ YL L+G DL ++ + FL
Sbjct: 34 DKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLHGFDLASEQHTVRDTAFLM 93
Query: 1995 QQMKWRETLSIIKNKKDKVKFMALLQ 2020
+Q++ RE L I+ KD+ + + ++
Sbjct: 94 EQLELREELDEIEQAKDEARLESFIK 119
|
| >3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A* Length = 465 | Back alignment and structure |
|---|
Score = 80.8 bits (199), Expect = 2e-15
Identities = 63/401 (15%), Positives = 120/401 (29%), Gaps = 72/401 (17%)
Query: 12 RVVDKMIPYLRVQFGNPASRNHIYGWTAE-KAIEKARNEVAQLIYADPREIIWTSGATES 70
V + L ++ A+ H G E + ++ A+ +EI + T +
Sbjct: 82 MVKTYLEEELD-KWAKIAAYGHEVGKRPWITGDESIVGLMKDIVGANEKEIALMNALTVN 140
Query: 71 NNLAIKGAAHFYKKRGKHIITVQTEHKS---VLDSIRKLENDGFRVT-YLKPKNNGLITL 126
+L + KR K I+ S ++S +L + + G TL
Sbjct: 141 LHLLMLSFFKPTPKRYK-ILLEAKAFPSDHYAIESQLQLHGLNIEESMRMIKPREGEETL 199
Query: 127 S-----QLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKID 181
++ EK ++ V+ G I I + ++KG D A AVG ++
Sbjct: 200 RIEDILEVIEKEGDSIAVILFSGVHFYTGQHFNIPAITKAGQAKGCYVGFDLAHAVGNVE 259
Query: 182 INIQNYKVDLMSFSAHK--IYGPKGIGALYIRRNPRTRIE-AQIHGGGHEY--------- 229
+ + ++ VD + ++K G GI +I I+ A + GHE
Sbjct: 260 LYLHDWGVDFACWCSYKYLNAGAGGIAGAFIHEKHAHTIKPALVGWFGHELSTRFKMDNK 319
Query: 230 --------GLRSGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEI 280
G R + + + + MK K+ + L L + + +
Sbjct: 320 LQLIPGVCGFRISNPPILLVCSLHASLEIFKQATMKALRKKSVLLTGYLEYLIKHNYGKD 379
Query: 281 YING-----------DMNNRIPHNLNISFNFIEGESLLMAIKDIAVSSGSACTSASLEPS 329
+ R ++ F +
Sbjct: 380 KAATKKPVVNIITPSHVEERGCQ---LTITFSVPNKDVFQ-------------------- 416
Query: 330 YVLRALG--CNDELAHSSIRFTIGRF-TTEKEIDFTIKLLK 367
L G C D+ + IR + ++ LL
Sbjct: 417 -ELEKRGVVC-DKRNPNGIRVAPVPLYNSFHDVYKFTNLLT 455
|
| >3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A* Length = 465 | Back alignment and structure |
|---|
Score = 80.8 bits (199), Expect = 2e-15
Identities = 63/401 (15%), Positives = 120/401 (29%), Gaps = 72/401 (17%)
Query: 1408 RVVDKMIPYLRVQFGNPASRNHIYGWTAE-KAIEKARNEVAQLIYADPREIIWTSGATES 1466
V + L ++ A+ H G E + ++ A+ +EI + T +
Sbjct: 82 MVKTYLEEELD-KWAKIAAYGHEVGKRPWITGDESIVGLMKDIVGANEKEIALMNALTVN 140
Query: 1467 NNLAIKGAAHFYKKRGKHIITVQTEHKS---VLDSIRKLENDGFRVT-YLKPKNNGLITL 1522
+L + KR K I+ S ++S +L + + G TL
Sbjct: 141 LHLLMLSFFKPTPKRYK-ILLEAKAFPSDHYAIESQLQLHGLNIEESMRMIKPREGEETL 199
Query: 1523 S-----QLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKID 1577
++ EK ++ V+ G I I + ++KG D A AVG ++
Sbjct: 200 RIEDILEVIEKEGDSIAVILFSGVHFYTGQHFNIPAITKAGQAKGCYVGFDLAHAVGNVE 259
Query: 1578 INIQNYKVDLMSFSAHK--IYGPKGIGALYIRRNPRTRIE-AQIHGGGHEY--------- 1625
+ + ++ VD + ++K G GI +I I+ A + GHE
Sbjct: 260 LYLHDWGVDFACWCSYKYLNAGAGGIAGAFIHEKHAHTIKPALVGWFGHELSTRFKMDNK 319
Query: 1626 --------GLRSGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEI 1676
G R + + + + MK K+ + L L + + +
Sbjct: 320 LQLIPGVCGFRISNPPILLVCSLHASLEIFKQATMKALRKKSVLLTGYLEYLIKHNYGKD 379
Query: 1677 YING-----------DMNNRIPHNLNISFNFIEGESLLMAIKDIAVSSGSACTSASLEPS 1725
+ R ++ F +
Sbjct: 380 KAATKKPVVNIITPSHVEERGCQ---LTITFSVPNKDVFQ-------------------- 416
Query: 1726 YVLRALG--CNDELAHSSIRFTIGRF-TTEKEIDFTIKLLK 1763
L G C D+ + IR + ++ LL
Sbjct: 417 -ELEKRGVVC-DKRNPNGIRVAPVPLYNSFHDVYKFTNLLT 455
|
| >3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens} Length = 207 | Back alignment and structure |
|---|
Score = 73.2 bits (179), Expect = 3e-14
Identities = 26/89 (29%), Positives = 48/89 (53%)
Query: 536 YFNDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKLNGIDLNTKLNLNFSHD 595
D F Q+S+ ++D S K ST +N AY L P R +YL KL+GI++ + +
Sbjct: 73 VHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLKLHGIEIPERTDYEMDRQ 132
Query: 596 FLEQQMKWRETLSIIKNKKDKVKFMALLQ 624
FL + M+ E L+ +++ + ++++
Sbjct: 133 FLIEIMEINEKLAEAESEAAMKEIESIVK 161
|
| >3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens} Length = 207 | Back alignment and structure |
|---|
Score = 73.2 bits (179), Expect = 3e-14
Identities = 26/89 (29%), Positives = 48/89 (53%)
Query: 1932 YFNDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKLNGIDLNTKLNLNFSHD 1991
D F Q+S+ ++D S K ST +N AY L P R +YL KL+GI++ + +
Sbjct: 73 VHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLKLHGIEIPERTDYEMDRQ 132
Query: 1992 FLEQQMKWRETLSIIKNKKDKVKFMALLQ 2020
FL + M+ E L+ +++ + ++++
Sbjct: 133 FLIEIMEINEKLAEAESEAAMKEIESIVK 161
|
| >1nwb_A Hypothetical protein AQ_1857; QR6, structural genomics, protein structure initiative, NESG, reduced dimensionality PSI; NMR {Aquifex aeolicus} SCOP: b.124.1.1 Length = 124 | Back alignment and structure |
|---|
Score = 70.4 bits (173), Expect = 4e-14
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 470 VTKKAAKYINKYIQKRG-KGIGLRLGVYNRGCSGLSYKLEYVDEKRKEDQVFKLNGVQIF 528
VT KA + I K Q+ + LR+ V GCSG Y + + D + D VF+ +GV++
Sbjct: 12 VTDKAVEEIKKVAQENNIENPILRIRVVPGGCSGFQYAMGFDDTVEEGDHVFEYDGVKVV 71
Query: 529 INEKDLLY 536
I+ + Y
Sbjct: 72 IDPFSMPY 79
|
| >1nwb_A Hypothetical protein AQ_1857; QR6, structural genomics, protein structure initiative, NESG, reduced dimensionality PSI; NMR {Aquifex aeolicus} SCOP: b.124.1.1 Length = 124 | Back alignment and structure |
|---|
Score = 70.4 bits (173), Expect = 4e-14
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 1866 VTKKAAKYINKYIQKRG-KGIGLRLGVYNRGCSGLSYKLEYVDEKRKEDQVFKLNGVQIF 1924
VT KA + I K Q+ + LR+ V GCSG Y + + D + D VF+ +GV++
Sbjct: 12 VTDKAVEEIKKVAQENNIENPILRIRVVPGGCSGFQYAMGFDDTVEEGDHVFEYDGVKVV 71
Query: 1925 INEKDLLY 1932
I+ + Y
Sbjct: 72 IDPFSMPY 79
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 76.4 bits (187), Expect = 1e-13
Identities = 109/754 (14%), Positives = 208/754 (27%), Gaps = 270/754 (35%)
Query: 710 RDLKNINTNSFPYDFQNK---------FGMLHIKTISGIKSPIEISAQIFITLKKIAENA 760
+D+ ++ ++F +F K I I K + + ++F TL E
Sbjct: 19 KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEM 78
Query: 761 VNNRIFGAVITVPAY----------------------------FNDIQRQFTKNAAKLAG 792
V + V+ Y +ND Q F K
Sbjct: 79 V-QKFVEEVLR-INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV-FAK------- 128
Query: 793 LNVLR--LLNEPTSAAIAYKLDKNIFEGIFAVYDLGG-GTFDISILKFKNGVFKVLSVGG 849
NV R + A +L + + + + G G + + L V
Sbjct: 129 YNVSRLQPYLKLRQA--LLELRPA--KNVL-IDGVLGSGK---TWV--------ALDVCL 172
Query: 850 DSNLGGDDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDK 909
+ D+ +F W+ + + +L + + +
Sbjct: 173 SYKV-QCKMDFKIF-WLN----------------LKNCNSPETVLEMLQKLLYQIDPNWT 214
Query: 910 KIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGV 969
+ + ++K Q + R LL SK + L + ++ N K
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRR--LLKSKPYENCLLVLLNVQNA---------KAW---- 259
Query: 970 SNFFK---TTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGL 1026
N F LLT+ K V +FLS + + S+
Sbjct: 260 -NAFNLSCKILLTT--RFKQV-------TDFLSAATTTH-----ISLDHHSMT------- 297
Query: 1027 VEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANF---ELRDIPP 1083
T DE+ +L + +D+P
Sbjct: 298 ------------------LT----------------PDEVK---SLLLKYLDCRPQDLPR 320
Query: 1084 -----MPAGRARIKVTYQVDADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKNGAIFN 1138
P LSI A E I + T + ++N D++ I
Sbjct: 321 EVLTTNPR---------------RLSIIA-ESI--RDGLATWDNWKHVNCDKLTT-II-- 359
Query: 1139 ENSGISLCDALLKN-----SIFIEHACEKSCACATCHVIIREGFNEI---NKANEVEEDM 1190
E+S L A + S+F I + + +
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVFPP------------SAHIPTILLSLIWFDVIKSDVMVV 407
Query: 1191 LNKAWGLEENSRLSFDAKRGKICTRIMRELRVAINFGNNPDTNIKLRLAIEKALDAN--- 1247
+NK L + S + K I I P ++L++ +E +
Sbjct: 408 VNK---LHKYSLVEKQPKESTI--SI-------------PSIYLELKVKLENEYALHRSI 449
Query: 1248 IPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFN 1307
+ NI + ++ I Y + G+ + ++ R +F
Sbjct: 450 VDHYNIPKTFDSDDL-IPPYLDQYF-YSHIGHHLKNI---------EHPERMTLFRMVFL 498
Query: 1308 KNGGNLSKEGSVLFM---FKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKIT-II 1363
+ F+ +H + NTL L K + ++ D D K ++
Sbjct: 499 ----DFR------FLEQKIRHDSTAWNASGSILNTLQQL---KFYKPYICDNDPKYERLV 545
Query: 1364 TSPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIV 1397
+ F+ K E + ++ YT+++
Sbjct: 546 NAILDFL----------PKIEEN-LICSKYTDLL 568
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 71.0 bits (173), Expect = 5e-12
Identities = 112/668 (16%), Positives = 211/668 (31%), Gaps = 223/668 (33%)
Query: 38 TAE-KAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEH 96
E I +++ V+ + WT + + F ++ ++ +
Sbjct: 48 KEEIDHIIMSKDAVSGT-----LRLFWTLLSKQEE-----MVQKFVEE------VLRINY 91
Query: 97 KSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPIL 156
K ++ I+ + P + + Q + ++ +D + + V+ QP L
Sbjct: 92 KFLMSPIKTEQRQ--------PSMMTRMYIEQRD-RLYNDNQVFAKYNVSRL----QPYL 138
Query: 157 EI----GELCRSKGVIFH--------CDAAQAVGKIDINIQNYKV-DLMSFSAHKIYGPK 203
++ EL +K V+ A +YKV M F KI+
Sbjct: 139 KLRQALLELRPAKNVLIDGVLGSGKTWVALDVC-------LSYKVQCKMDF---KIF--- 185
Query: 204 GIGALYI----RRNPRTRIE------AQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARI 253
++ +P T +E QI S + +L
Sbjct: 186 -----WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI------------KLRIH 228
Query: 254 EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIKDI 313
++ EL+R L K N L+ + ++ N N +FN +L+ +
Sbjct: 229 SIQAELRR-LLKSKPYENCLL-------VLLNVQN--AKAWN-AFNL--SCKILLTTRFK 275
Query: 314 AVS---SGSACTSASLEP-----------SYVLRALGCNDE-----------LAHSSI-- 346
V+ S + T SL+ S +L+ L C + S I
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE 335
Query: 347 --RFTIGRFTTEKEIDFTIKLLKMKEFFMSYSEKVLDHYENPR---NVGVFEKNDNTVGT 401
R + + K ++ KL + E S VL+ E + + VF +
Sbjct: 336 SIRDGLATWDNWKHVNCD-KLTTIIE--SSL--NVLEPAEYRKMFDRLSVFPPS------ 384
Query: 402 GMVGAPACGDVMKL---QIKVNKNGVITDAKFKTYGCGSAIASSSLVTEWVKGKTLDEAM 458
P ++ L + + V+ + K Y SLV + K T+
Sbjct: 385 --AHIPT--ILLSLIWFDVIKSDVMVVVN-KLHKY---------SLVEKQPKESTI---- 426
Query: 459 SIKNTDIAEELVTKKAAKY------INKYIQKRGKGIGLRLGVYNRG--CSGLSYKLEYV 510
SI I EL K +Y ++ Y + + Y S + + L+ +
Sbjct: 427 SIP--SIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI 484
Query: 511 DEKRKEDQVFKLNGVQIFINEKDLLYFNDNFIQKSKIDQDAS------------VKLSTY 558
+ + +F+ +++ + F+++ KI D++ +L Y
Sbjct: 485 EHPERMT-LFR------------MVFLDFRFLEQ-KIRHDSTAWNASGSILNTLQQLKFY 530
Query: 559 LNKAYSILKDPFLRSIYLCKLNGIDLNTKLNLNFSHDFLEQQMKWRETLSIIKNKKDKVK 618
K Y DP Y +N I DFL + E I K
Sbjct: 531 --KPYICDNDP----KYERLVNAIL-----------DFLPKI----EENLICS------K 563
Query: 619 FMALLQIS 626
+ LL+I+
Sbjct: 564 YTDLLRIA 571
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 71.0 bits (173), Expect = 5e-12
Identities = 112/668 (16%), Positives = 211/668 (31%), Gaps = 223/668 (33%)
Query: 1434 TAE-KAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEH 1492
E I +++ V+ + WT + + F ++ ++ +
Sbjct: 48 KEEIDHIIMSKDAVSGT-----LRLFWTLLSKQEE-----MVQKFVEE------VLRINY 91
Query: 1493 KSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPIL 1552
K ++ I+ + P + + Q + ++ +D + + V+ QP L
Sbjct: 92 KFLMSPIKTEQRQ--------PSMMTRMYIEQRD-RLYNDNQVFAKYNVSRL----QPYL 138
Query: 1553 EI----GELCRSKGVIFH--------CDAAQAVGKIDINIQNYKV-DLMSFSAHKIYGPK 1599
++ EL +K V+ A +YKV M F KI+
Sbjct: 139 KLRQALLELRPAKNVLIDGVLGSGKTWVALDVC-------LSYKVQCKMDF---KIF--- 185
Query: 1600 GIGALYI----RRNPRTRIE------AQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARI 1649
++ +P T +E QI S + +L
Sbjct: 186 -----WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI------------KLRIH 228
Query: 1650 EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIKDI 1709
++ EL+R L K N L+ + ++ N N +FN +L+ +
Sbjct: 229 SIQAELRR-LLKSKPYENCLL-------VLLNVQN--AKAWN-AFNL--SCKILLTTRFK 275
Query: 1710 AVS---SGSACTSASLEP-----------SYVLRALGCNDE-----------LAHSSI-- 1742
V+ S + T SL+ S +L+ L C + S I
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE 335
Query: 1743 --RFTIGRFTTEKEIDFTIKLLKMKEFFMSYSEKVLDHYENPR---NVGVFEKNDNTVGT 1797
R + + K ++ KL + E S VL+ E + + VF +
Sbjct: 336 SIRDGLATWDNWKHVNCD-KLTTIIE--SSL--NVLEPAEYRKMFDRLSVFPPS------ 384
Query: 1798 GMVGAPACGDVMKL---QIKVNKNGVITDAKFKTYGCGSAIASSSLVTEWVKGKTLDEAM 1854
P ++ L + + V+ + K Y SLV + K T+
Sbjct: 385 --AHIPT--ILLSLIWFDVIKSDVMVVVN-KLHKY---------SLVEKQPKESTI---- 426
Query: 1855 SIKNTDIAEELVTKKAAKY------INKYIQKRGKGIGLRLGVYNRG--CSGLSYKLEYV 1906
SI I EL K +Y ++ Y + + Y S + + L+ +
Sbjct: 427 SIP--SIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI 484
Query: 1907 DEKRKEDQVFKLNGVQIFINEKDLLYFNDNFIQKSKIDQDAS------------VKLSTY 1954
+ + +F+ +++ + F+++ KI D++ +L Y
Sbjct: 485 EHPERMT-LFR------------MVFLDFRFLEQ-KIRHDSTAWNASGSILNTLQQLKFY 530
Query: 1955 LNKAYSILKDPFLRSIYLCKLNGIDLNTKLNLNFSHDFLEQQMKWRETLSIIKNKKDKVK 2014
K Y DP Y +N I DFL + E I K
Sbjct: 531 --KPYICDNDP----KYERLVNAIL-----------DFLPKI----EENLICS------K 563
Query: 2015 FMALLQIS 2022
+ LL+I+
Sbjct: 564 YTDLLRIA 571
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 58.3 bits (140), Expect = 3e-08
Identities = 86/534 (16%), Positives = 155/534 (29%), Gaps = 163/534 (30%)
Query: 2106 RDLKNINTNSFPYDFQNK---------FGMLHIKTISGIKSPIEISAQIFITLKKIAENA 2156
+D+ ++ ++F +F K I I K + + ++F TL E
Sbjct: 19 KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEM 78
Query: 2157 VNNRIFGAVITVPAY----------------------------FNDIQRQFTKNAAKLAG 2188
V + V+ Y +ND Q F K
Sbjct: 79 V-QKFVEEVLR-INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV-FAK------- 128
Query: 2189 LNVLR--LLNEPTSAAIAYKLDKNIFEGIFAVYDLGG-GTFDISILKFKNGVFKVLSVGG 2245
NV R + A +L + + + + G G + + L V
Sbjct: 129 YNVSRLQPYLKLRQA--LLELRPA--KNVL-IDGVLGSGK---TWV--------ALDVCL 172
Query: 2246 DSNLGGDDFDYCLFSWI-VKN-----AFLKKLSYKDVNILMIKSREIKELLSYQSSVKLN 2299
+ D+ +F W+ +KN L+ L +L + S++KL
Sbjct: 173 SYKV-QCKMDFKIF-WLNLKNCNSPETVLEMLQ----KLLYQIDPNWTSRSDHSSNIKLR 226
Query: 2300 VKLSDKKIVNITIDMKQFFTITQH----LV-----NRTIL----LSSKALMDANLTIKDI 2346
I +I ++++ + LV N LS K L LT +
Sbjct: 227 -------IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL----LTTRFK 275
Query: 2347 NNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFL- 2405
V + HI + TL PD+ ++ +L L
Sbjct: 276 -QVTDFLSAATTTHI---SLDHHSMTL----TPDEVK----SLLLKYL----DCRPQDLP 319
Query: 2406 --LLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKV---VQGED 2460
+L P L I I + + + ++ I+ V
Sbjct: 320 REVLTTNPRRLSI--IAESIRDGLATWDN--------WKHVNCDKLTTIIESSLNVLEPA 369
Query: 2461 ELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYEKISGKKKFITIKPFY 2520
E K L+ F P + + LS+ ++ I + K +
Sbjct: 370 EYRKMFDRLSVF--------PPS---AHIPTIL-----LSLIWFDVIKSDVMVVVNK-LH 412
Query: 2521 NMNLDEIKNGAIFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFN 2574
+L E K + S IS+ L+ + +E+ H I + +N
Sbjct: 413 KYSLVE-KQ----PKESTISIPSIYLELKVKLENE-------YALHRSIVDHYN 454
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.9 bits (131), Expect = 4e-07
Identities = 95/678 (14%), Positives = 215/678 (31%), Gaps = 154/678 (22%)
Query: 921 FFTITQHLVNRTILLSSKALMDANLTIKDINNVIL-VGGSTRMKHIHEGVSNFFKTTLLT 979
F T + IL + N KD+ ++ + + HI T L
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF 68
Query: 980 SIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLVEKIIF---RNTT 1036
K + F+ I+ FL+ + E + ++ R+
Sbjct: 69 WTLLSK----QEEMVQKFVEEVLRINYKFLMS-----PIKTEQRQPSMMTRMYIEQRDRL 119
Query: 1037 IPCSYSGEFTTFKDN----QTAIAIK------------VVQGEDELVKNC--QVLANFEL 1078
+ + F K N Q + ++ ++ G V +A
Sbjct: 120 --YNDNQVFA--KYNVSRLQPYLKLRQALLELRPAKNVLIDG----VLGSGKTWVALDVC 171
Query: 1079 RDIPP---MPAGRARIKVTYQVDADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKNGA 1135
M + + + +L + +K I P + D N
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEML-------QKLLYQIDPNWTSRSDHSSN-I 223
Query: 1136 IFNENSGIS-----LCDALLKNSIFI-EHACEKSCACA---TCHVII----REGFNEINK 1182
+S + L +N + + + A +C +++ ++ + ++
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283
Query: 1183 ANEVEEDMLNKAWGLEENSRLSFDAKRGKICTRI-MRELRVAINFGNNPDTNIKLRLAIE 1241
A + + + L + S K ++L + N P +
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLK----YLDCRPQDLPREVLTTN-P-------RRL- 330
Query: 1242 KALDANIPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAII---VDCITNNRMRT 1298
+I ++ + N+ V + + II ++ + R
Sbjct: 331 ----------SIIAESIRDGLATWD---NWKHVNCDKLT----TIIESSLNVLEPAEYRK 373
Query: 1299 VSNIRNIFNKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDN 1358
+ + ++F + ++ +L L++ + K+ ++ + + K + L++K
Sbjct: 374 MFDRLSVFPPSA-HIPTI--LL-------SLIWF-DVIKSDVMVV-VNKLHKYSLVEKQP 421
Query: 1359 KITIITSPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDATTPIDPRVVDKMIPYLR 1418
K + I+ PS ++E+K LE A IV Y D+ I P +D+ Y
Sbjct: 422 KESTISIPSIYLELKVKLE--NEYALHRSIVDH-YNIPKTFDSDDLIPPY-LDQYF-Y-- 474
Query: 1419 VQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFY 1478
+HI G + R + ++++ D R F
Sbjct: 475 ---------SHI-GHHLKNIEHPERMTLFRMVFLDFR---------------------FL 503
Query: 1479 KKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLIT-----LSQLEEKI--CS 1531
+++ +H T S+L+++++L+ + PK L+ L ++EE +
Sbjct: 504 EQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSK 563
Query: 1532 DTILVSVMLVNNEIGVIQ 1549
T L+ + L+ + + +
Sbjct: 564 YTDLLRIALMAEDEAIFE 581
|
| >3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} Length = 397 | Back alignment and structure |
|---|
Score = 72.8 bits (179), Expect = 5e-13
Identities = 46/315 (14%), Positives = 97/315 (30%), Gaps = 53/315 (16%)
Query: 13 VVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEV----AQLIYADPREIIWTSGAT 68
+ ++P R N K + + L+ SG T
Sbjct: 38 MCSNVLPITRKIVDIFLETNLGD-PGLFKGTKLLEEKAVALLGSLLNNKDAYGHIVSGGT 96
Query: 69 ESNNLAIKGAAHFYKKRGKH---------IITVQTEHKSVLDSIRKLENDGFRVTYLKPK 119
E+N +A++ + ++++ + II T H S + Y K
Sbjct: 97 EANLMALRCIKNIWREKRRKGLSKNEHPKIIVPITAHFSFEKGREMM---DLEYIYAPIK 153
Query: 120 NNGLITLSQLEEKICSDTILVSVMLVNN----EIGVIQPILEIGELCRSKGVIFHCDAA- 174
+ I +++ + + ++ E+G I I E+ ++ + + H DAA
Sbjct: 154 EDYTIDEKFVKDAVEDYDVD---GIIGIAGTTELGTIDNIEELSKIAKENNIYIHVDAAF 210
Query: 175 ---------QAVGKIDINIQ---NYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQ 221
K +N + + VD ++ HK + P G + + ++ +
Sbjct: 211 GGLVIPFLDDKYKKKGVNYKFDFSLGVDSITIDPHKMGHCPIPSGGI-LFKDIGYK-RYL 268
Query: 222 IH-----GGGHEYGL---RSGTLATHQIVGMGEAF-RLARIEMKEELKRILFLQKRLYNG 272
+ + R G L R ++ + + LY
Sbjct: 269 DVDAPYLTETRQATILGTRVG----FGGACTYAVLRYLGREGQRKIVNECMENTLYLYKK 324
Query: 273 LMESIEEIYINGDMN 287
L E+ + I +N
Sbjct: 325 LKENNFKPVIEPILN 339
|
| >3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} Length = 397 | Back alignment and structure |
|---|
Score = 72.8 bits (179), Expect = 5e-13
Identities = 46/315 (14%), Positives = 97/315 (30%), Gaps = 53/315 (16%)
Query: 1409 VVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEV----AQLIYADPREIIWTSGAT 1464
+ ++P R N K + + L+ SG T
Sbjct: 38 MCSNVLPITRKIVDIFLETNLGD-PGLFKGTKLLEEKAVALLGSLLNNKDAYGHIVSGGT 96
Query: 1465 ESNNLAIKGAAHFYKKRGKH---------IITVQTEHKSVLDSIRKLENDGFRVTYLKPK 1515
E+N +A++ + ++++ + II T H S + Y K
Sbjct: 97 EANLMALRCIKNIWREKRRKGLSKNEHPKIIVPITAHFSFEKGREMM---DLEYIYAPIK 153
Query: 1516 NNGLITLSQLEEKICSDTILVSVMLVNN----EIGVIQPILEIGELCRSKGVIFHCDAA- 1570
+ I +++ + + ++ E+G I I E+ ++ + + H DAA
Sbjct: 154 EDYTIDEKFVKDAVEDYDVD---GIIGIAGTTELGTIDNIEELSKIAKENNIYIHVDAAF 210
Query: 1571 ---------QAVGKIDINIQ---NYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQ 1617
K +N + + VD ++ HK + P G + + ++ +
Sbjct: 211 GGLVIPFLDDKYKKKGVNYKFDFSLGVDSITIDPHKMGHCPIPSGGI-LFKDIGYK-RYL 268
Query: 1618 IH-----GGGHEYGL---RSGTLATHQIVGMGEAF-RLARIEMKEELKRILFLQKRLYNG 1668
+ + R G L R ++ + + LY
Sbjct: 269 DVDAPYLTETRQATILGTRVG----FGGACTYAVLRYLGREGQRKIVNECMENTLYLYKK 324
Query: 1669 LMESIEEIYINGDMN 1683
L E+ + I +N
Sbjct: 325 LKENNFKPVIEPILN 339
|
| >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 Length = 456 | Back alignment and structure |
|---|
Score = 73.2 bits (179), Expect = 5e-13
Identities = 50/319 (15%), Positives = 102/319 (31%), Gaps = 36/319 (11%)
Query: 64 TSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNG- 122
T +T + AA K +I HKS + ++ + G + ++ +G
Sbjct: 155 TPISTGMSISLCLSAAR-KKYGSNVVIYPYASHKSPIKAVSFV---GMNMRLVETVLDGD 210
Query: 123 --LITLSQLEEKICSDTILVSVMLV-----NNEIGVIQPILEIGELCRSKGVIFHCDAAQ 175
+ + +E I + L + V I+EI ++C + + + A
Sbjct: 211 RVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAY 270
Query: 176 AVG-----KIDINIQNYKVDLMSFSAHKI-YGPKGIGALYIRRNPRTRIEAQIHGGGHEY 229
A+ + Y+VD + S+ K P G G +Y + E + G
Sbjct: 271 AIQNNYYLEKLKKAFKYRVDAVVSSSDKNLLTPIGGGLVYS-TDAEFIKEISLSYPGRAS 329
Query: 230 GLRS-GTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNN 288
TL + +G + + E +K +K L L + + ++
Sbjct: 330 ATPVVNTLVSLLSMGS-KNYL-------ELVKNQKNSKKLLDELL-NDLSKKTGGKFLDV 380
Query: 289 RIPHNLNISFNFIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRF 348
P IS N + + + ++ V +G + H I
Sbjct: 381 ESPIASCISVNS-DPVEIAAKLYNLRV-TGPRGIKKTDHFGNCY-----LGTYTHDYIVM 433
Query: 349 TIGRFTTEKEIDFTIKLLK 367
++I ++ L+
Sbjct: 434 NAAIGVRTEDIVNSVSKLE 452
|
| >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 Length = 456 | Back alignment and structure |
|---|
Score = 73.2 bits (179), Expect = 5e-13
Identities = 50/319 (15%), Positives = 102/319 (31%), Gaps = 36/319 (11%)
Query: 1460 TSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNG- 1518
T +T + AA K +I HKS + ++ + G + ++ +G
Sbjct: 155 TPISTGMSISLCLSAAR-KKYGSNVVIYPYASHKSPIKAVSFV---GMNMRLVETVLDGD 210
Query: 1519 --LITLSQLEEKICSDTILVSVMLV-----NNEIGVIQPILEIGELCRSKGVIFHCDAAQ 1571
+ + +E I + L + V I+EI ++C + + + A
Sbjct: 211 RVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAY 270
Query: 1572 AVG-----KIDINIQNYKVDLMSFSAHKI-YGPKGIGALYIRRNPRTRIEAQIHGGGHEY 1625
A+ + Y+VD + S+ K P G G +Y + E + G
Sbjct: 271 AIQNNYYLEKLKKAFKYRVDAVVSSSDKNLLTPIGGGLVYS-TDAEFIKEISLSYPGRAS 329
Query: 1626 GLRS-GTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNN 1684
TL + +G + + E +K +K L L + + ++
Sbjct: 330 ATPVVNTLVSLLSMGS-KNYL-------ELVKNQKNSKKLLDELL-NDLSKKTGGKFLDV 380
Query: 1685 RIPHNLNISFNFIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRF 1744
P IS N + + + ++ V +G + H I
Sbjct: 381 ESPIASCISVNS-DPVEIAAKLYNLRV-TGPRGIKKTDHFGNCY-----LGTYTHDYIVM 433
Query: 1745 TIGRFTTEKEIDFTIKLLK 1763
++I ++ L+
Sbjct: 434 NAAIGVRTEDIVNSVSKLE 452
|
| >2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A* Length = 346 | Back alignment and structure |
|---|
Score = 69.8 bits (170), Expect = 3e-12
Identities = 48/370 (12%), Positives = 99/370 (26%), Gaps = 75/370 (20%)
Query: 640 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 699
+G+D G ++ V V + PS +G K + +
Sbjct: 24 VGLDVGYGDTKVIGVDGKR----------IIFPSRWAVTETESWGIGGKIPVLSTDGGQT 73
Query: 700 TISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAEN 759
K +++ + E I L + +
Sbjct: 74 KFIYGKYASGNNIRVPQGDGRLASK-------------------EAFPLIAAALWESGIH 114
Query: 760 AVNNRIFGAVIT-VPAYFNDIQRQFTKNAAK------------LAGLNVLRLLNEPTSAA 806
+ + + + P D++ + K A + + N+ RL+ P
Sbjct: 115 NDGSPVDLVIGSGTPLGTFDLEVKAAKEALENKVLTVTGPEGEVRQFNITRLIMRPQGVG 174
Query: 807 IAYKL----DKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCL 862
A L G V D+G T D+ + + V+ + +G D
Sbjct: 175 AALYLLNQGIIEQQPGYGVVIDVGSRTTDVLTINLMDMEP-VVELSFSLQIGVGDAIS-- 231
Query: 863 FSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITIDMKQFF 922
+ K+ + L Q ++ V K++ +
Sbjct: 232 ---ALSRKIAKETGFVVPFDLA------------QEALSHPVMFRQKQVGGPEVSGPILE 276
Query: 923 TITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSI- 981
+ ++ L + + ++I VGG + + I + TL+
Sbjct: 277 DLANRIIENI----RLNLRGE---VDRVTSLIPVGGGSNL--IGDRFEEIAPGTLVKIKP 327
Query: 982 -DPDKAVVFG 990
D A G
Sbjct: 328 EDLQFANALG 337
|
| >2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A* Length = 346 | Back alignment and structure |
|---|
Score = 69.8 bits (170), Expect = 3e-12
Identities = 48/370 (12%), Positives = 99/370 (26%), Gaps = 75/370 (20%)
Query: 2036 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 2095
+G+D G ++ V V + PS +G K + +
Sbjct: 24 VGLDVGYGDTKVIGVDGKR----------IIFPSRWAVTETESWGIGGKIPVLSTDGGQT 73
Query: 2096 TISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAEN 2155
K +++ + E I L + +
Sbjct: 74 KFIYGKYASGNNIRVPQGDGRLASK-------------------EAFPLIAAALWESGIH 114
Query: 2156 AVNNRIFGAVIT-VPAYFNDIQRQFTKNAAK------------LAGLNVLRLLNEPTSAA 2202
+ + + + P D++ + K A + + N+ RL+ P
Sbjct: 115 NDGSPVDLVIGSGTPLGTFDLEVKAAKEALENKVLTVTGPEGEVRQFNITRLIMRPQGVG 174
Query: 2203 IAYKL----DKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCL 2258
A L G V D+G T D+ + + V+ + +G D
Sbjct: 175 AALYLLNQGIIEQQPGYGVVIDVGSRTTDVLTINLMDMEP-VVELSFSLQIGVGDAIS-- 231
Query: 2259 FSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITIDMKQFF 2318
+ K+ + L Q ++ V K++ +
Sbjct: 232 ---ALSRKIAKETGFVVPFDLA------------QEALSHPVMFRQKQVGGPEVSGPILE 276
Query: 2319 TITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSI- 2377
+ ++ L + + ++I VGG + + I + TL+
Sbjct: 277 DLANRIIENI----RLNLRGE---VDRVTSLIPVGGGSNL--IGDRFEEIAPGTLVKIKP 327
Query: 2378 -DPDKAVVFG 2386
D A G
Sbjct: 328 EDLQFANALG 337
|
| >2apn_A Protein HI1723; HI1723 solution structure, structural genomics, structure 2 function project, S2F, unknown function; NMR {Haemophilus influenzae} Length = 114 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 3e-12
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 470 VTKKAAKYINKYIQKRGK-GIGLRLGVYNRGCSGLSYKLEYVDEKRKEDQVFKLNGVQIF 528
T AA + I + + LR+ + GCSG Y + ++ D + +GVQ+
Sbjct: 11 FTDAAANKVKSLISEEENTDLKLRVYITGGGCSGFQYGFTFDEKVNDGDLTIEKSGVQLV 70
Query: 529 INEKDLLY 536
I+ L Y
Sbjct: 71 IDPMSLQY 78
|
| >2apn_A Protein HI1723; HI1723 solution structure, structural genomics, structure 2 function project, S2F, unknown function; NMR {Haemophilus influenzae} Length = 114 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 3e-12
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 1866 VTKKAAKYINKYIQKRGK-GIGLRLGVYNRGCSGLSYKLEYVDEKRKEDQVFKLNGVQIF 1924
T AA + I + + LR+ + GCSG Y + ++ D + +GVQ+
Sbjct: 11 FTDAAANKVKSLISEEENTDLKLRVYITGGGCSGFQYGFTFDEKVNDGDLTIEKSGVQLV 70
Query: 1925 INEKDLLY 1932
I+ L Y
Sbjct: 71 IDPMSLQY 78
|
| >3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} Length = 497 | Back alignment and structure |
|---|
Score = 63.4 bits (154), Expect = 6e-10
Identities = 51/256 (19%), Positives = 92/256 (35%), Gaps = 48/256 (18%)
Query: 64 TSGATESNNLAIKGA-AHFYKKRGKH---IITVQTEHKSVLDSIRKLENDGFRVTYLK-P 118
TSG TES LA A + RG II T H + G ++ +++
Sbjct: 132 TSGGTESLLLACLSAKMYALHHRGITEPEIIAPVTAHAGFDKAAYYF---GMKLRHVELD 188
Query: 119 KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAA---- 174
+ L ++++ I +T+L+ N G+ I +G++ + + H D+
Sbjct: 189 PTTYQVDLGKVKKFINKNTVLLVGSAPNFPHGIADDIEGLGKIAQKYKLPLHVDSCLGSF 248
Query: 175 ----------QAVGKIDINIQNYKVDLMSFSAHKI-YGPKGIGALYIRRNPRTRIEAQIH 223
+ + +D + V +S HK + PKG + RN R+
Sbjct: 249 IVSFMEKAGYKNLPLLDFRVPG--VTSISCDTHKYGFAPKGSSVIMY-RNSDLRMHQYYV 305
Query: 224 G----GGHEY-----GLRSGTL-----ATHQIVGMGEAFRLARIEMKEELKRILFLQKRL 269
GG G R G + AT +G + E + I+ +
Sbjct: 306 NPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMGE-NGYI-------ESCQEIVGAAMKF 357
Query: 270 YNGLMESIEEIYINGD 285
+ E+I ++ I G+
Sbjct: 358 KKYIQENIPDLDIMGN 373
|
| >3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} Length = 497 | Back alignment and structure |
|---|
Score = 63.4 bits (154), Expect = 6e-10
Identities = 51/256 (19%), Positives = 92/256 (35%), Gaps = 48/256 (18%)
Query: 1460 TSGATESNNLAIKGA-AHFYKKRGKH---IITVQTEHKSVLDSIRKLENDGFRVTYLK-P 1514
TSG TES LA A + RG II T H + G ++ +++
Sbjct: 132 TSGGTESLLLACLSAKMYALHHRGITEPEIIAPVTAHAGFDKAAYYF---GMKLRHVELD 188
Query: 1515 KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAA---- 1570
+ L ++++ I +T+L+ N G+ I +G++ + + H D+
Sbjct: 189 PTTYQVDLGKVKKFINKNTVLLVGSAPNFPHGIADDIEGLGKIAQKYKLPLHVDSCLGSF 248
Query: 1571 ----------QAVGKIDINIQNYKVDLMSFSAHKI-YGPKGIGALYIRRNPRTRIEAQIH 1619
+ + +D + V +S HK + PKG + RN R+
Sbjct: 249 IVSFMEKAGYKNLPLLDFRVPG--VTSISCDTHKYGFAPKGSSVIMY-RNSDLRMHQYYV 305
Query: 1620 G----GGHEY-----GLRSGTL-----ATHQIVGMGEAFRLARIEMKEELKRILFLQKRL 1665
GG G R G + AT +G + E + I+ +
Sbjct: 306 NPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMGE-NGYI-------ESCQEIVGAAMKF 357
Query: 1666 YNGLMESIEEIYINGD 1681
+ E+I ++ I G+
Sbjct: 358 KKYIQENIPDLDIMGN 373
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* Length = 514 | Back alignment and structure |
|---|
Score = 63.4 bits (154), Expect = 7e-10
Identities = 65/308 (21%), Positives = 103/308 (33%), Gaps = 62/308 (20%)
Query: 3 YSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREII 62
+ +T + VV M ++ G A+ + G
Sbjct: 134 WPSTAKFEAEVVA-MTAHM---LGGDAAGGTVCG-------------------------T 164
Query: 63 WTSGATESNNLAIKGA-AHFYKKRGKH---IITVQTEHKSVLDSIRKLENDGFRVTYLKP 118
TSG TES LA+K +G + + H + + + G ++
Sbjct: 165 VTSGGTESLLLAMKTYRDWARATKGITAPEAVVPVSAHAAFDKAAQYF---GIKLVRTPL 221
Query: 119 KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVG 178
+ ++ + E I +T++V+ GV+ PI EI L G+ H DA G
Sbjct: 222 DADYRADVAAMREAITPNTVVVAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDAC-LGG 280
Query: 179 KIDINIQNYK------------VDLMSFSAHKI-YGPKGIGALYIR----RNPRTRIEAQ 221
I + V +S HK YG KG + R + + I A
Sbjct: 281 FILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGYGAKGTSVILYRRPDLLHYQYFIAAD 340
Query: 222 IHGGGHE----YGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESI 277
GG + G R G L+ M L + +RIL RL G+ +I
Sbjct: 341 WPGGLYFSPTFAGSRPGALSATAWAAM---LSLGEEGYLDATRRILQAADRLKAGV-RAI 396
Query: 278 EEIYINGD 285
+ I GD
Sbjct: 397 PSLKILGD 404
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* Length = 514 | Back alignment and structure |
|---|
Score = 63.4 bits (154), Expect = 7e-10
Identities = 58/247 (23%), Positives = 89/247 (36%), Gaps = 33/247 (13%)
Query: 1460 TSGATESNNLAIKGA-AHFYKKRGKH---IITVQTEHKSVLDSIRKLENDGFRVTYLKPK 1515
TSG TES LA+K +G + + H + + + G ++
Sbjct: 166 TSGGTESLLLAMKTYRDWARATKGITAPEAVVPVSAHAAFDKAAQYF---GIKLVRTPLD 222
Query: 1516 NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGK 1575
+ ++ + E I +T++V+ GV+ PI EI L G+ H DA G
Sbjct: 223 ADYRADVAAMREAITPNTVVVAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDAC-LGGF 281
Query: 1576 IDINIQNYK------------VDLMSFSAHKI-YGPKGIGALYIR----RNPRTRIEAQI 1618
I + V +S HK YG KG + R + + I A
Sbjct: 282 ILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGYGAKGTSVILYRRPDLLHYQYFIAADW 341
Query: 1619 HGGGHE----YGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIE 1674
GG + G R G L+ M L + +RIL RL G+ +I
Sbjct: 342 PGGLYFSPTFAGSRPGALSATAWAAM---LSLGEEGYLDATRRILQAADRLKAGV-RAIP 397
Query: 1675 EIYINGD 1681
+ I GD
Sbjct: 398 SLKILGD 404
|
| >3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus} Length = 355 | Back alignment and structure |
|---|
Score = 62.4 bits (151), Expect = 7e-10
Identities = 60/389 (15%), Positives = 119/389 (30%), Gaps = 70/389 (17%)
Query: 635 NKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQN 694
+ + +DFG I +IPS + + + +
Sbjct: 2 SNVYVMALDFGNGFVKGKINDEKF-----------VIPSRIGRKTNENNQLKGFVDNKLD 50
Query: 695 IDPKNTISSIKR---FIARDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFI 751
+ + F K NT +++ + K + + I +
Sbjct: 51 VSEFIINGNNDEVLLFGNDLDKTTNTGKDTASTNDRYDIKSFKDL--------VECSIGL 102
Query: 752 TLKKIAENAVNNRIFGAVITVP--AYFNDIQRQFTKNAAKLAGLNV-----------LRL 798
+++ E VN I +P D Q +F K K + + +++
Sbjct: 103 LAREVPEEVVNVVI---ATGMPSNEIGTDKQAKFEKLLNKSRLIEIDGIAKTINVKGVKI 159
Query: 799 LNEPTSAAIAYKLD-----KNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNL 853
+ +P + ++ K EG ++V D G GT I ++N V N
Sbjct: 160 VAQPMGTLLDLNMENGKVFKAFTEGKYSVLDFGSGTTIIDT--YQNMKR-VEEESFVINK 216
Query: 854 GGDDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVN 913
G DF +S K I R I++ L Y+ KL+ K +++
Sbjct: 217 GTIDFY---------KRIASHVS-KKSEGASITPRMIEKGLEYK-----QCKLNQKTVID 261
Query: 914 ITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFF 973
+ + L+ + I I+ +I+ GG + + +S+++
Sbjct: 262 FKDEFYK---EQDSLIEEVM----SNFEITVGNINSIDRIIVTGGGANI--HFDSLSHYY 312
Query: 974 KTTLLTSIDPDKAVVFGAAIQANFLSGNR 1002
+ D + V G L
Sbjct: 313 SDVFEKADDSQFSNVRGYEKLGELLKNKV 341
|
| >3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus} Length = 355 | Back alignment and structure |
|---|
Score = 62.4 bits (151), Expect = 7e-10
Identities = 60/389 (15%), Positives = 119/389 (30%), Gaps = 70/389 (17%)
Query: 2031 NKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQN 2090
+ + +DFG I +IPS + + + +
Sbjct: 2 SNVYVMALDFGNGFVKGKINDEKF-----------VIPSRIGRKTNENNQLKGFVDNKLD 50
Query: 2091 IDPKNTISSIKR---FIARDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFI 2147
+ + F K NT +++ + K + + I +
Sbjct: 51 VSEFIINGNNDEVLLFGNDLDKTTNTGKDTASTNDRYDIKSFKDL--------VECSIGL 102
Query: 2148 TLKKIAENAVNNRIFGAVITVP--AYFNDIQRQFTKNAAKLAGLNV-----------LRL 2194
+++ E VN I +P D Q +F K K + + +++
Sbjct: 103 LAREVPEEVVNVVI---ATGMPSNEIGTDKQAKFEKLLNKSRLIEIDGIAKTINVKGVKI 159
Query: 2195 LNEPTSAAIAYKLD-----KNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNL 2249
+ +P + ++ K EG ++V D G GT I ++N V N
Sbjct: 160 VAQPMGTLLDLNMENGKVFKAFTEGKYSVLDFGSGTTIIDT--YQNMKR-VEEESFVINK 216
Query: 2250 GGDDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVN 2309
G DF +S K I R I++ L Y+ KL+ K +++
Sbjct: 217 GTIDFY---------KRIASHVS-KKSEGASITPRMIEKGLEYK-----QCKLNQKTVID 261
Query: 2310 ITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFF 2369
+ + L+ + I I+ +I+ GG + + +S+++
Sbjct: 262 FKDEFYK---EQDSLIEEVM----SNFEITVGNINSIDRIIVTGGGANI--HFDSLSHYY 312
Query: 2370 KTTLLTSIDPDKAVVFGAAIQANFLSGNR 2398
+ D + V G L
Sbjct: 313 SDVFEKADDSQFSNVRGYEKLGELLKNKV 341
|
| >4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani} Length = 329 | Back alignment and structure |
|---|
Score = 61.6 bits (149), Expect = 1e-09
Identities = 37/324 (11%), Positives = 98/324 (30%), Gaps = 44/324 (13%)
Query: 684 YVGKKAKITQNIDPKNTISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPI 743
+GK K T + + + +I NS + K ++ + +
Sbjct: 21 LIGKNKKGTTEDIKRVIFKTKIYNLEDGYIDIEGNSHKIELDGKEYLIGEQGVEDSSETS 80
Query: 744 EISAQIFI-TLKKIAE--NAVNNRIFGAVITVPA--YFNDIQRQFTKNAAKLAG------ 792
+ + + I + ++ N V+ P N ++ ++ K G
Sbjct: 81 KTNLIHKLAAYTAITQVLDSNKNNKVQLVLACPLSVLRNAKAKEEYRDYIKGNGEITVKV 140
Query: 793 ------LNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLS 846
+ + + + + + +N AV D GG S+ ++N V S
Sbjct: 141 DDKEYSFEITDITIKAEGSGVLFLEQENFKNKNVAVIDFGGLNMGFSL--YRNCVV-NPS 197
Query: 847 VGGDSNLGGDDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKL 906
G D + + ++ + L
Sbjct: 198 ERFIEEHGVKDLIIRVGDALTDLNNGNLITNEQAESA----------------------L 235
Query: 907 SDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIH 966
++ + + T+ + + + + + K + + ++++I +GG+T+ +
Sbjct: 236 NNGYMKKGGEIDTESSTVIKKVKEKFLKDAIKLIEKRGFKLDQLDSLIFIGGTTQK--LK 293
Query: 967 EGVSNFFKTTLLTSIDPDKAVVFG 990
E +S + + + + G
Sbjct: 294 EQISKTYPNNSIITNNSQWTTCEG 317
|
| >4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani} Length = 329 | Back alignment and structure |
|---|
Score = 61.6 bits (149), Expect = 1e-09
Identities = 37/324 (11%), Positives = 98/324 (30%), Gaps = 44/324 (13%)
Query: 2080 YVGKKAKITQNIDPKNTISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPI 2139
+GK K T + + + +I NS + K ++ + +
Sbjct: 21 LIGKNKKGTTEDIKRVIFKTKIYNLEDGYIDIEGNSHKIELDGKEYLIGEQGVEDSSETS 80
Query: 2140 EISAQIFI-TLKKIAE--NAVNNRIFGAVITVPA--YFNDIQRQFTKNAAKLAG------ 2188
+ + + I + ++ N V+ P N ++ ++ K G
Sbjct: 81 KTNLIHKLAAYTAITQVLDSNKNNKVQLVLACPLSVLRNAKAKEEYRDYIKGNGEITVKV 140
Query: 2189 ------LNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLS 2242
+ + + + + + +N AV D GG S+ ++N V S
Sbjct: 141 DDKEYSFEITDITIKAEGSGVLFLEQENFKNKNVAVIDFGGLNMGFSL--YRNCVV-NPS 197
Query: 2243 VGGDSNLGGDDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKL 2302
G D + + ++ + L
Sbjct: 198 ERFIEEHGVKDLIIRVGDALTDLNNGNLITNEQAESA----------------------L 235
Query: 2303 SDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIH 2362
++ + + T+ + + + + + K + + ++++I +GG+T+ +
Sbjct: 236 NNGYMKKGGEIDTESSTVIKKVKEKFLKDAIKLIEKRGFKLDQLDSLIFIGGTTQK--LK 293
Query: 2363 EGVSNFFKTTLLTSIDPDKAVVFG 2386
E +S + + + + G
Sbjct: 294 EQISKTYPNNSIITNNSQWTTCEG 317
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 Length = 467 | Back alignment and structure |
|---|
Score = 61.7 bits (149), Expect = 2e-09
Identities = 54/301 (17%), Positives = 91/301 (30%), Gaps = 47/301 (15%)
Query: 122 GLITLSQLEEKICSDTI----LVSVMLVNNEIGVIQP-----ILEIGELCRSKGVIFHCD 172
G + +L+E I + + N G QP + E+ E+ + G+ D
Sbjct: 165 GDFDIKKLKENIAQHGADNIVAIVSTVTCNSAG-GQPVSMSNLKEVYEIAKQHGIFVVMD 223
Query: 173 AAQAVGK---IDINIQNYK--------------VDLMSFSAHKIYGPKGIGALYIRRNPR 215
+A+ I YK D ++ SA K G + IR N
Sbjct: 224 SARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIGGLVAIRDNEE 283
Query: 216 TRIEAQIHGGGHEYGLRSGTLATHQIVGM--GEAFRLARIEMKEELKRILFLQKRLYNGL 273
A+ E + G LA + M G + + ++ +L RL
Sbjct: 284 IFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRLREAG 343
Query: 274 MESIEEIYING---DMNNRIPHNLNISFNFIEGESLLMAIKDIAVSSGSACTSASLEPSY 330
+ + D +P I + ++++ A + + SG
Sbjct: 344 IPIQYPTGGHAVFVDCKKLVPQ---IPGDQFPAQAVINA---LYLESGVRAVEIGSFLLG 397
Query: 331 VLRALGCNDELAHSSIRFTIGRFT-TEKEIDFTIKLLK--------MKEFFMSYSEKVLD 381
A G +R TI R T +D+ L +K Y VL
Sbjct: 398 RDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKEKFATLKGLEFEYEPPVLR 457
Query: 382 H 382
H
Sbjct: 458 H 458
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 Length = 467 | Back alignment and structure |
|---|
Score = 61.7 bits (149), Expect = 2e-09
Identities = 54/301 (17%), Positives = 91/301 (30%), Gaps = 47/301 (15%)
Query: 1518 GLITLSQLEEKICSDTI----LVSVMLVNNEIGVIQP-----ILEIGELCRSKGVIFHCD 1568
G + +L+E I + + N G QP + E+ E+ + G+ D
Sbjct: 165 GDFDIKKLKENIAQHGADNIVAIVSTVTCNSAG-GQPVSMSNLKEVYEIAKQHGIFVVMD 223
Query: 1569 AAQAVGK---IDINIQNYK--------------VDLMSFSAHKIYGPKGIGALYIRRNPR 1611
+A+ I YK D ++ SA K G + IR N
Sbjct: 224 SARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIGGLVAIRDNEE 283
Query: 1612 TRIEAQIHGGGHEYGLRSGTLATHQIVGM--GEAFRLARIEMKEELKRILFLQKRLYNGL 1669
A+ E + G LA + M G + + ++ +L RL
Sbjct: 284 IFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRLREAG 343
Query: 1670 MESIEEIYING---DMNNRIPHNLNISFNFIEGESLLMAIKDIAVSSGSACTSASLEPSY 1726
+ + D +P I + ++++ A + + SG
Sbjct: 344 IPIQYPTGGHAVFVDCKKLVPQ---IPGDQFPAQAVINA---LYLESGVRAVEIGSFLLG 397
Query: 1727 VLRALGCNDELAHSSIRFTIGRFT-TEKEIDFTIKLLK--------MKEFFMSYSEKVLD 1777
A G +R TI R T +D+ L +K Y VL
Sbjct: 398 RDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKEKFATLKGLEFEYEPPVLR 457
Query: 1778 H 1778
H
Sbjct: 458 H 458
|
| >2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* Length = 452 | Back alignment and structure |
|---|
Score = 58.8 bits (142), Expect = 2e-08
Identities = 55/349 (15%), Positives = 99/349 (28%), Gaps = 55/349 (15%)
Query: 5 ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREI--- 61
T D V M + + + Y +A + N VA L +A +
Sbjct: 50 CQTWDDENVHKLMDLSINKNWIDK----EEYPQSAAIDLR-CVNMVADLWHAPAPKNGQA 104
Query: 62 --IWTSGATESNNLAIKGAAHFYKKRGKH--------IITVQTEHKSVLDSIRKLENDGF 111
T G++E+ L ++KR + + + +
Sbjct: 105 VGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGPVQICW-HKFARYWDVEL 163
Query: 112 RVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELC------RSK 165
R ++P + ++ E +TI V G + + +
Sbjct: 164 REIPMRP-GQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGI 222
Query: 166 GVIFHCDAA---------QAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIR---- 211
+ H DAA D + V +S S HK P G G + R
Sbjct: 223 DIDMHIDAASGGFLAPFVAPDIVWDFRLPR--VKSISASGHKFGLAPLGCGWVIWRDEEA 280
Query: 212 RNPRTRIEAQIHGGGHE-YGL---RSGTLATHQIVGMGEAF-RLARIEMKEELKRILFLQ 266
GG + + R Q++ F RL R + +
Sbjct: 281 LPQELVFNVDYLGGQIGTFAINFSRPA----GQVIAQYYEFLRLGREGYTKVQNASYQVA 336
Query: 267 KRLYNGLMES-IEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIKDIA 314
L + + + E G + IP + F +GE + D++
Sbjct: 337 AYLADEIAKLGPYEFICTGRPDEGIPA---VCFKLKDGEDPGYTLYDLS 382
|
| >2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* Length = 452 | Back alignment and structure |
|---|
Score = 58.8 bits (142), Expect = 2e-08
Identities = 55/349 (15%), Positives = 99/349 (28%), Gaps = 55/349 (15%)
Query: 1401 ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREI--- 1457
T D V M + + + Y +A + N VA L +A +
Sbjct: 50 CQTWDDENVHKLMDLSINKNWIDK----EEYPQSAAIDLR-CVNMVADLWHAPAPKNGQA 104
Query: 1458 --IWTSGATESNNLAIKGAAHFYKKRGKH--------IITVQTEHKSVLDSIRKLENDGF 1507
T G++E+ L ++KR + + + +
Sbjct: 105 VGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGPVQICW-HKFARYWDVEL 163
Query: 1508 RVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELC------RSK 1561
R ++P + ++ E +TI V G + + +
Sbjct: 164 REIPMRP-GQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGI 222
Query: 1562 GVIFHCDAA---------QAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIR---- 1607
+ H DAA D + V +S S HK P G G + R
Sbjct: 223 DIDMHIDAASGGFLAPFVAPDIVWDFRLPR--VKSISASGHKFGLAPLGCGWVIWRDEEA 280
Query: 1608 RNPRTRIEAQIHGGGHE-YGL---RSGTLATHQIVGMGEAF-RLARIEMKEELKRILFLQ 1662
GG + + R Q++ F RL R + +
Sbjct: 281 LPQELVFNVDYLGGQIGTFAINFSRPA----GQVIAQYYEFLRLGREGYTKVQNASYQVA 336
Query: 1663 KRLYNGLMES-IEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIKDIA 1710
L + + + E G + IP + F +GE + D++
Sbjct: 337 AYLADEIAKLGPYEFICTGRPDEGIPA---VCFKLKDGEDPGYTLYDLS 382
|
| >3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A Length = 181 | Back alignment and structure |
|---|
Score = 53.8 bits (129), Expect = 7e-08
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
Query: 556 STYLNKAYSILKDPFLRSIYLCKL-NGIDL----NTKLNLNFSHDFLEQQMKWRETLSII 610
S+ LN+AY LKDP RS Y+ KL IDL + L + + + LS +
Sbjct: 58 SSTLNQAYHTLKDPLRRSQYMLKLLRNIDLTQEQTSNEVTTSDPQLLLKVLDIHDELSQM 117
Query: 611 KNKKDKVKFMALLQ 624
++ +
Sbjct: 118 DDEAGVKLLEKQNK 131
|
| >3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A Length = 181 | Back alignment and structure |
|---|
Score = 53.8 bits (129), Expect = 7e-08
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
Query: 1952 STYLNKAYSILKDPFLRSIYLCKL-NGIDL----NTKLNLNFSHDFLEQQMKWRETLSII 2006
S+ LN+AY LKDP RS Y+ KL IDL + L + + + LS +
Sbjct: 58 SSTLNQAYHTLKDPLRRSQYMLKLLRNIDLTQEQTSNEVTTSDPQLLLKVLDIHDELSQM 117
Query: 2007 KNKKDKVKFMALLQ 2020
++ +
Sbjct: 118 DDEAGVKLLEKQNK 131
|
| >1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 Length = 366 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 1e-07
Identities = 37/182 (20%), Positives = 70/182 (38%), Gaps = 20/182 (10%)
Query: 110 GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNE--IGVIQPILEIGELCRSKGV 167
G + ++ + +D + + +V++E G++ PI E+G L G
Sbjct: 103 GIAHHAYDCGEVARPDVQAIDAILNADPTISHIAMVHSETTTGMLNPIDEVGALAHRYGK 162
Query: 168 IFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRR--------NPRTRI 218
+ DA + G I ++I +D + SA+K I G G + R + R+
Sbjct: 163 TYIVDAMSSFGGIPMDIAALHIDYLISSANKCIQGVPGFAFVIAREQKLAACKGHSRSLS 222
Query: 219 ---EAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEEL----KRILFLQKRLYN 271
AQ +G T TH ++ +A L + + + +R Q+ L
Sbjct: 223 LDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQA--LKELAKEGGVAARHQRYQQNQRSLVA 280
Query: 272 GL 273
G+
Sbjct: 281 GM 282
|
| >1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 Length = 366 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 1e-07
Identities = 37/182 (20%), Positives = 70/182 (38%), Gaps = 20/182 (10%)
Query: 1506 GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNE--IGVIQPILEIGELCRSKGV 1563
G + ++ + +D + + +V++E G++ PI E+G L G
Sbjct: 103 GIAHHAYDCGEVARPDVQAIDAILNADPTISHIAMVHSETTTGMLNPIDEVGALAHRYGK 162
Query: 1564 IFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRR--------NPRTRI 1614
+ DA + G I ++I +D + SA+K I G G + R + R+
Sbjct: 163 TYIVDAMSSFGGIPMDIAALHIDYLISSANKCIQGVPGFAFVIAREQKLAACKGHSRSLS 222
Query: 1615 ---EAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEEL----KRILFLQKRLYN 1667
AQ +G T TH ++ +A L + + + +R Q+ L
Sbjct: 223 LDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQA--LKELAKEGGVAARHQRYQQNQRSLVA 280
Query: 1668 GL 1669
G+
Sbjct: 281 GM 282
|
| >2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* Length = 456 | Back alignment and structure |
|---|
Score = 55.9 bits (134), Expect = 1e-07
Identities = 57/372 (15%), Positives = 107/372 (28%), Gaps = 62/372 (16%)
Query: 59 REIIWTSGATESNNLAIKGAAHFYKKRGKHII---TVQTEHKSVLDS---IRKLENDGFR 112
+ I+ T + NL K G+++ T + + D
Sbjct: 91 KHIVPTHQGRGAENLLS----QLAIKPGQYVAGNMYFTTTRYHQEKNGAVFVDIVRDEAH 146
Query: 113 VTYLKPKNNGLITLSQLEEKICSDTI----LVSVMLVNNEIGVIQP-----ILEIGELCR 163
L G I L +L++ I + + + N G QP + + EL
Sbjct: 147 DAGLNIAFKGDIDLKKLQKLIDEKGAENIAYICLAVTVNLAG-GQPVSMANMRAVRELTE 205
Query: 164 SKGVIFHCDAAQAVGK---IDINIQNYK--------------VDLMSFSAHKIYGPKGIG 206
+ G+ DA + V I Q ++ D + S K IG
Sbjct: 206 AHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGCTMSGKKDCLV-NIG 264
Query: 207 ALYIRRNP----RTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRI 262
+ + ++ G YG +G +G+ EA + IE +K++
Sbjct: 265 GFLCMNDDEMFSSAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQYEYIE--HRVKQV 322
Query: 263 LFLQKRLYNGLMESIEEIYING---DMNNRIPHNLNISFNFIEGESLLMAIKDIAVSSGS 319
+L +L + +E + + D H F + + +
Sbjct: 323 RYLGDKLKAAGVPIVEPVGGHAVFLDARRFCEHLTQDEFPAQSLAASIYVETGVRSMERG 382
Query: 320 ACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFT-TEKEIDFTIKLLK--------MKE 370
++ + E +R TI R T +D + ++
Sbjct: 383 IISAGRNNVTGEHHR--PKLET----VRLTIPRRVYTYAHMDVVADGIIKLYQHKEDIRG 436
Query: 371 FFMSYSEKVLDH 382
Y K L
Sbjct: 437 LKFIYEPKQLRF 448
|
| >2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* Length = 456 | Back alignment and structure |
|---|
Score = 55.9 bits (134), Expect = 1e-07
Identities = 57/372 (15%), Positives = 107/372 (28%), Gaps = 62/372 (16%)
Query: 1455 REIIWTSGATESNNLAIKGAAHFYKKRGKHII---TVQTEHKSVLDS---IRKLENDGFR 1508
+ I+ T + NL K G+++ T + + D
Sbjct: 91 KHIVPTHQGRGAENLLS----QLAIKPGQYVAGNMYFTTTRYHQEKNGAVFVDIVRDEAH 146
Query: 1509 VTYLKPKNNGLITLSQLEEKICSDTI----LVSVMLVNNEIGVIQP-----ILEIGELCR 1559
L G I L +L++ I + + + N G QP + + EL
Sbjct: 147 DAGLNIAFKGDIDLKKLQKLIDEKGAENIAYICLAVTVNLAG-GQPVSMANMRAVRELTE 205
Query: 1560 SKGVIFHCDAAQAVGK---IDINIQNYK--------------VDLMSFSAHKIYGPKGIG 1602
+ G+ DA + V I Q ++ D + S K IG
Sbjct: 206 AHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGCTMSGKKDCLV-NIG 264
Query: 1603 ALYIRRNP----RTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRI 1658
+ + ++ G YG +G +G+ EA + IE +K++
Sbjct: 265 GFLCMNDDEMFSSAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQYEYIE--HRVKQV 322
Query: 1659 LFLQKRLYNGLMESIEEIYING---DMNNRIPHNLNISFNFIEGESLLMAIKDIAVSSGS 1715
+L +L + +E + + D H F + + +
Sbjct: 323 RYLGDKLKAAGVPIVEPVGGHAVFLDARRFCEHLTQDEFPAQSLAASIYVETGVRSMERG 382
Query: 1716 ACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFT-TEKEIDFTIKLLK--------MKE 1766
++ + E +R TI R T +D + ++
Sbjct: 383 IISAGRNNVTGEHHR--PKLET----VRLTIPRRVYTYAHMDVVADGIIKLYQHKEDIRG 436
Query: 1767 FFMSYSEKVLDH 1778
Y K L
Sbjct: 437 LKFIYEPKQLRF 448
|
| >3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} Length = 502 | Back alignment and structure |
|---|
Score = 55.8 bits (134), Expect = 1e-07
Identities = 49/323 (15%), Positives = 100/323 (30%), Gaps = 48/323 (14%)
Query: 3 YSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEK-ARNEVAQLIYADPREI 61
TT ++P ++ + + + Y T E ++ N +A L A E
Sbjct: 62 SFVTTWMEPECDKLIMSSINKNYVDMD----EYPVTTE--LQNRCVNMIAHLFNAPLEEA 115
Query: 62 IW-----TSGATESNNLAIKGAAHFYKKRGKH---------IITVQTEHKSVLDSIRKLE 107
T G++E+ LA ++ + K I+T + +
Sbjct: 116 ETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVCW-EKFARYF 174
Query: 108 NDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKG- 166
+ L ++ Q + + +TI V+ +L + G + + + +L K
Sbjct: 175 EVELKEVKLSE-GYYVMDPQQAVDMVDENTICVAAILGSTLNGEFEDVKLLNDLLVEKNK 233
Query: 167 -----VIFHCDAA-------QAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIR-- 211
H DAA +++ + + V ++ S HK GIG + R
Sbjct: 234 ETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNK 293
Query: 212 --RNPRTRIEAQIHGGGHE-YGL---RSGTLATHQIVGMGEAFRLARIEMKEELKRILFL 265
G + L + + Q + RL + ++
Sbjct: 294 EDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQL---IRLGHEGYRNVMENCREN 350
Query: 266 QKRLYNGLMESIEEIYINGDMNN 288
L GL ++ ++ D
Sbjct: 351 MIVLREGLEKTERFNIVSKDEGV 373
|
| >3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} Length = 502 | Back alignment and structure |
|---|
Score = 55.8 bits (134), Expect = 1e-07
Identities = 38/256 (14%), Positives = 79/256 (30%), Gaps = 36/256 (14%)
Query: 1460 TSGATESNNLAIKGAAHFYKKRGKH---------IITVQTEHKSVLDSIRKLENDGFRVT 1510
T G++E+ LA ++ + K I+T + + +
Sbjct: 123 TVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVCW-EKFARYFEVELKEV 181
Query: 1511 YLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKG------VI 1564
L ++ Q + + +TI V+ +L + G + + + +L K
Sbjct: 182 KLSE-GYYVMDPQQAVDMVDENTICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTP 240
Query: 1565 FHCDAA-------QAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIR----RNPRT 1612
H DAA +++ + + V ++ S HK GIG + R
Sbjct: 241 IHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEEL 300
Query: 1613 RIEAQIHGGGHE-YGL---RSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNG 1668
G + L + + Q + RL + ++ L G
Sbjct: 301 IFHINYLGADQPTFTLNFSKGSSQVIAQYYQL---IRLGHEGYRNVMENCRENMIVLREG 357
Query: 1669 LMESIEEIYINGDMNN 1684
L ++ ++ D
Sbjct: 358 LEKTERFNIVSKDEGV 373
|
| >3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes} Length = 359 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 2e-06
Identities = 41/231 (17%), Positives = 74/231 (32%), Gaps = 55/231 (23%)
Query: 64 TSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRV-----TYLKP 118
SG T + +A++ +K + + H + E DG + L
Sbjct: 70 PSG-TMAQQIALR--IWADRKENRRVAYHPLSH------LEIHEQDGLKELQQITPLLLG 120
Query: 119 KNNGLITLSQLEEKICSDTILVSVMLVNNEI-GVIQP---ILEIGELCRSKGVIFHCDAA 174
N L+T+ ++ V + L EI G + + +I E C +G+ H D A
Sbjct: 121 TANQLLTIDDIKSLRE-PVSSVLIELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGA 179
Query: 175 ---QAVGKIDINIQNY--KVDLMSFSAHKIYGPKGIGAL----------YIRRNPRTRIE 219
+ + + D + S Y KGIG + +++ +
Sbjct: 180 RLWEITPFYQKSAEEICALFDSVYVS---FY--KGIGGIAGAILAGNDDFVQEAKIWK-- 232
Query: 220 AQIHGGGHEYGLR-SGTLA-------THQIVGMGEAFRLARIEMKEELKRI 262
+ +GG L +I M E F A+ + E
Sbjct: 233 -RRYGG----DLISLYPYILSADYYFEKRIGKMAEYFEAAK-GLAERFNSC 277
|
| >3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes} Length = 359 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 2e-06
Identities = 41/231 (17%), Positives = 74/231 (32%), Gaps = 55/231 (23%)
Query: 1460 TSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRV-----TYLKP 1514
SG T + +A++ +K + + H + E DG + L
Sbjct: 70 PSG-TMAQQIALR--IWADRKENRRVAYHPLSH------LEIHEQDGLKELQQITPLLLG 120
Query: 1515 KNNGLITLSQLEEKICSDTILVSVMLVNNEI-GVIQP---ILEIGELCRSKGVIFHCDAA 1570
N L+T+ ++ V + L EI G + + +I E C +G+ H D A
Sbjct: 121 TANQLLTIDDIKSLRE-PVSSVLIELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGA 179
Query: 1571 ---QAVGKIDINIQNY--KVDLMSFSAHKIYGPKGIGAL----------YIRRNPRTRIE 1615
+ + + D + S Y KGIG + +++ +
Sbjct: 180 RLWEITPFYQKSAEEICALFDSVYVS---FY--KGIGGIAGAILAGNDDFVQEAKIWK-- 232
Query: 1616 AQIHGGGHEYGLR-SGTLA-------THQIVGMGEAFRLARIEMKEELKRI 1658
+ +GG L +I M E F A+ + E
Sbjct: 233 -RRYGG----DLISLYPYILSADYYFEKRIGKMAEYFEAAK-GLAERFNSC 277
|
| >2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* Length = 396 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 4e-06
Identities = 28/171 (16%), Positives = 59/171 (34%), Gaps = 30/171 (17%)
Query: 110 GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNE--IGVIQPILEIGELCRSKGV 167
G V ++ + +L L I + L + + G++QP+ +G++C
Sbjct: 116 GADVRTIEGPPDRPFSLETLARAIELHQPKC-LFLTHGDSSSGLLQPLEGVGQICHQHDC 174
Query: 168 IFHCDAAQAVGKIDINIQNYKVD---------LM-----SFSAHKIYGPKGIGALYIRRN 213
+ DA ++ + + +++D L + + PK + + RR
Sbjct: 175 LLIVDAVASLCGVPFYMDKWEIDAVYTGAQKVLGAPPGITPIS---ISPKALDVIRNRRT 231
Query: 214 PRT------RIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEE 258
+ G E T+A++ I + EA + EE
Sbjct: 232 KSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQ----IAEE 278
|
| >2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* Length = 396 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 4e-06
Identities = 28/171 (16%), Positives = 59/171 (34%), Gaps = 30/171 (17%)
Query: 1506 GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNE--IGVIQPILEIGELCRSKGV 1563
G V ++ + +L L I + L + + G++QP+ +G++C
Sbjct: 116 GADVRTIEGPPDRPFSLETLARAIELHQPKC-LFLTHGDSSSGLLQPLEGVGQICHQHDC 174
Query: 1564 IFHCDAAQAVGKIDINIQNYKVD---------LM-----SFSAHKIYGPKGIGALYIRRN 1609
+ DA ++ + + +++D L + + PK + + RR
Sbjct: 175 LLIVDAVASLCGVPFYMDKWEIDAVYTGAQKVLGAPPGITPIS---ISPKALDVIRNRRT 231
Query: 1610 PRT------RIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEE 1654
+ G E T+A++ I + EA + EE
Sbjct: 232 KSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQ----IAEE 278
|
| >3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae} Length = 411 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 6e-06
Identities = 36/181 (19%), Positives = 66/181 (36%), Gaps = 37/181 (20%)
Query: 110 GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNE--IGVIQPILEIGELCRSKGV 167
V ++ + T Q+E+ + + ++ V + ++QP+ E+GE+CR
Sbjct: 111 RAEVHTIEVPWGEVFTPDQVEDAVKRIRPRL-LLTVQGDTSTTMLQPLAELGEICRRYDA 169
Query: 168 IFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYG-PKGIGALYI----------RRNPRT 216
+F+ DA ++G + + +D +S K G P G + + R+
Sbjct: 170 LFYTDATASLGGNPLETDVWGLDAVSAGMQKCLGGPSGTSPITLSARMEEAIRRRKCVEE 229
Query: 217 RIEAQIHGGGHEYGLRS-------------------GTLATHQIVGMGEAFRLARIEMKE 257
I H G E + S T AT + G E RL + +
Sbjct: 230 GIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARL----ILQ 285
Query: 258 E 258
E
Sbjct: 286 E 286
|
| >3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae} Length = 411 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 6e-06
Identities = 36/181 (19%), Positives = 66/181 (36%), Gaps = 37/181 (20%)
Query: 1506 GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNE--IGVIQPILEIGELCRSKGV 1563
V ++ + T Q+E+ + + ++ V + ++QP+ E+GE+CR
Sbjct: 111 RAEVHTIEVPWGEVFTPDQVEDAVKRIRPRL-LLTVQGDTSTTMLQPLAELGEICRRYDA 169
Query: 1564 IFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYG-PKGIGALYI----------RRNPRT 1612
+F+ DA ++G + + +D +S K G P G + + R+
Sbjct: 170 LFYTDATASLGGNPLETDVWGLDAVSAGMQKCLGGPSGTSPITLSARMEEAIRRRKCVEE 229
Query: 1613 RIEAQIHGGGHEYGLRS-------------------GTLATHQIVGMGEAFRLARIEMKE 1653
I H G E + S T AT + G E RL + +
Sbjct: 230 GIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARL----ILQ 285
Query: 1654 E 1654
E
Sbjct: 286 E 286
|
| >2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* Length = 393 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 1e-05
Identities = 25/171 (14%), Positives = 58/171 (33%), Gaps = 30/171 (17%)
Query: 110 GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNE--IGVIQPILEIGELCRSKGV 167
G V +K K ++L ++ + + V + L + GV+Q + +G LC
Sbjct: 117 GADVRVVKSKVGQSLSLDEIRDALLIHKPSV-LFLTQGDSSTGVLQGLEGVGALCHQHNC 175
Query: 168 IFHCDAAQAVGKIDINIQNYKVD---------LM-----SFSAHKIYGPKGIGALYIRRN 213
+ D ++G + + +++D L + + + + + R
Sbjct: 176 LLIVDTVASLGGAPMFMDRWEIDAMYTGSQKVLGAPPGITPVS---FSHRAVERYKRRNT 232
Query: 214 PRT------RIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEE 258
+ G + T+++ + G+ EA + EE
Sbjct: 233 KVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAM----ACEE 279
|
| >2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* Length = 393 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 1e-05
Identities = 25/171 (14%), Positives = 58/171 (33%), Gaps = 30/171 (17%)
Query: 1506 GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNE--IGVIQPILEIGELCRSKGV 1563
G V +K K ++L ++ + + V + L + GV+Q + +G LC
Sbjct: 117 GADVRVVKSKVGQSLSLDEIRDALLIHKPSV-LFLTQGDSSTGVLQGLEGVGALCHQHNC 175
Query: 1564 IFHCDAAQAVGKIDINIQNYKVD---------LM-----SFSAHKIYGPKGIGALYIRRN 1609
+ D ++G + + +++D L + + + + + R
Sbjct: 176 LLIVDTVASLGGAPMFMDRWEIDAMYTGSQKVLGAPPGITPVS---FSHRAVERYKRRNT 232
Query: 1610 PRT------RIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEE 1654
+ G + T+++ + G+ EA + EE
Sbjct: 233 KVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAM----ACEE 279
|
| >3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A* Length = 384 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 2e-05
Identities = 31/171 (18%), Positives = 58/171 (33%), Gaps = 30/171 (17%)
Query: 110 GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNE--IGVIQPILEIGELCRSKGV 167
V L+P + ++EE++ + V L + E GV +P+ ++ R
Sbjct: 100 PVNVKVLRPSPGDYVKPGEVEEEVRKSEYKL-VALTHVETSTGVREPVKDVINKIRKYVE 158
Query: 168 IFHCDAAQAVGKIDINIQNYKVD---------LM-----SFSAHKIYGPKGIGALYIRRN 213
+ D +VG ++ + + VD L PK + L + +
Sbjct: 159 LIVVDGVSSVGAEEVKAEEWNVDVYLTASQKALGSAAGLGLLL---LSPKALSILDSQNS 215
Query: 214 PRT------RIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEE 258
+ G T H I+ + EAFRL +++E
Sbjct: 216 IAGYYLDLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRL----IEKE 262
|
| >3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A* Length = 384 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 2e-05
Identities = 31/171 (18%), Positives = 58/171 (33%), Gaps = 30/171 (17%)
Query: 1506 GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNE--IGVIQPILEIGELCRSKGV 1563
V L+P + ++EE++ + V L + E GV +P+ ++ R
Sbjct: 100 PVNVKVLRPSPGDYVKPGEVEEEVRKSEYKL-VALTHVETSTGVREPVKDVINKIRKYVE 158
Query: 1564 IFHCDAAQAVGKIDINIQNYKVD---------LM-----SFSAHKIYGPKGIGALYIRRN 1609
+ D +VG ++ + + VD L PK + L + +
Sbjct: 159 LIVVDGVSSVGAEEVKAEEWNVDVYLTASQKALGSAAGLGLLL---LSPKALSILDSQNS 215
Query: 1610 PRT------RIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEE 1654
+ G T H I+ + EAFRL +++E
Sbjct: 216 IAGYYLDLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRL----IEKE 262
|
| >2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* Length = 392 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 3e-05
Identities = 27/165 (16%), Positives = 52/165 (31%), Gaps = 20/165 (12%)
Query: 110 GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNE--IGVIQPILEIGELCRSKGV 167
+ ++ N I + + + + + V + +++ G I PI IG L + G
Sbjct: 106 SPHLLEIEVPYNEAIDPQAVADMLKAHPEITVVSVCHHDTPSGTINPIDAIGALVSAHGA 165
Query: 168 IFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYG-PKGIG-------ALYIRRNPRTRIE 219
DA + G + + ++ K D+ +K G P G+ A +
Sbjct: 166 YLIVDAVSSFGGMKTHPEDCKADIYVTGPNKCLGAPPGLTMMGVSERAWAKMKANPLAPR 225
Query: 220 ------AQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEE 258
T + +I G+ A L E
Sbjct: 226 ASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDL----YLNE 266
|
| >2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* Length = 392 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 3e-05
Identities = 27/165 (16%), Positives = 52/165 (31%), Gaps = 20/165 (12%)
Query: 1506 GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNE--IGVIQPILEIGELCRSKGV 1563
+ ++ N I + + + + + V + +++ G I PI IG L + G
Sbjct: 106 SPHLLEIEVPYNEAIDPQAVADMLKAHPEITVVSVCHHDTPSGTINPIDAIGALVSAHGA 165
Query: 1564 IFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYG-PKGIG-------ALYIRRNPRTRIE 1615
DA + G + + ++ K D+ +K G P G+ A +
Sbjct: 166 YLIVDAVSSFGGMKTHPEDCKADIYVTGPNKCLGAPPGLTMMGVSERAWAKMKANPLAPR 225
Query: 1616 ------AQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEE 1654
T + +I G+ A L E
Sbjct: 226 ASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDL----YLNE 266
|
| >1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3 Length = 393 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 6e-05
Identities = 35/171 (20%), Positives = 59/171 (34%), Gaps = 33/171 (19%)
Query: 110 GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNE--IGVIQPILEIGELCRSKGV 167
G V + + +L +L + + + + LV+ E G QP+ +GELCR G
Sbjct: 132 GADVRTISKPWGEVFSLEELRTALETHRPAI-LALVHAETSTGARQPLEGVGELCREFGT 190
Query: 168 IFHCDAAQAVGKIDINIQNYKVDL--------------MSFSAHKIYGPKGIGALYIRRN 213
+ D ++G + I + + VDL S + I L RR
Sbjct: 191 LLLVDTVTSLGGVPIFLDAWGVDLAYSCSQKGLGCSPGASPFT---MSSRAIEKLQRRRT 247
Query: 214 PRT------RIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEE 258
+ + G Y T + + EA RL + +E
Sbjct: 248 KVANWYLDMNLLGKYWGSERVY---HHTAPINLYYALREALRL----IAQE 291
|
| >1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3 Length = 393 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 6e-05
Identities = 35/171 (20%), Positives = 59/171 (34%), Gaps = 33/171 (19%)
Query: 1506 GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNE--IGVIQPILEIGELCRSKGV 1563
G V + + +L +L + + + + LV+ E G QP+ +GELCR G
Sbjct: 132 GADVRTISKPWGEVFSLEELRTALETHRPAI-LALVHAETSTGARQPLEGVGELCREFGT 190
Query: 1564 IFHCDAAQAVGKIDINIQNYKVDL--------------MSFSAHKIYGPKGIGALYIRRN 1609
+ D ++G + I + + VDL S + I L RR
Sbjct: 191 LLLVDTVTSLGGVPIFLDAWGVDLAYSCSQKGLGCSPGASPFT---MSSRAIEKLQRRRT 247
Query: 1610 PRT------RIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEE 1654
+ + G Y T + + EA RL + +E
Sbjct: 248 KVANWYLDMNLLGKYWGSERVY---HHTAPINLYYALREALRL----IAQE 291
|
| >4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} Length = 481 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 7e-05
Identities = 50/363 (13%), Positives = 102/363 (28%), Gaps = 96/363 (26%)
Query: 62 IWTSGATESNNLAIKGAAHFYKKRGKHIITVQTE---------------HKSVLDSIRKL 106
+ S +ES +A+ A K E H SV +
Sbjct: 149 VLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARLVAYASDQAHSSVEKAGLIS 208
Query: 107 ENDGFRVTYLKPKNNGLITLSQLEEKICSDTI--LVSVMLVNN----EIGVIQPILEIGE 160
++ +L +N + L++ I D LV V + + + E+G
Sbjct: 209 ---LVKMKFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDCLSELGP 265
Query: 161 LCRSKGVIFHCDAAQAVGKI----------DINIQNYKVDLMSFSAHK-IYGPKGIGALY 209
+C +G+ H DAA A I D +F+ K + +
Sbjct: 266 ICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIE----YADSFTFNPSKWMMVHFDCTGFW 321
Query: 210 IRRNPRTRIEA---------QIHGGGH----EYGLRSG----------TLATHQIVGMGE 246
+ ++ + + G + + + + + +
Sbjct: 322 V-KDKYKLQQTFSVNPIYLRHANSGVATDFMHWQIPLSRRFRSVKLWFVIRSFGVKNLQA 380
Query: 247 AFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESL 306
R EM + + ++ EI + + F SL
Sbjct: 381 HVR-HGTEMAKYFESLVRNDPSF---------EIPAKRHLG-------LVVFRLKGPNSL 423
Query: 307 LMAIKDIAVSSGSA-CTSASLEPSYVLRALGCNDELAHSSIRFTIG-RFTTEKEIDFTIK 364
+ +G A+++ ++ RFT+ +FTT +I
Sbjct: 424 TENVLKEIAKAGRLFLIPATIQDKLII--------------RFTVTSQFTTRDDILRDWN 469
Query: 365 LLK 367
L++
Sbjct: 470 LIR 472
|
| >4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} Length = 481 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 7e-05
Identities = 50/363 (13%), Positives = 102/363 (28%), Gaps = 96/363 (26%)
Query: 1458 IWTSGATESNNLAIKGAAHFYKKRGKHIITVQTE---------------HKSVLDSIRKL 1502
+ S +ES +A+ A K E H SV +
Sbjct: 149 VLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARLVAYASDQAHSSVEKAGLIS 208
Query: 1503 ENDGFRVTYLKPKNNGLITLSQLEEKICSDTI--LVSVMLVNN----EIGVIQPILEIGE 1556
++ +L +N + L++ I D LV V + + + E+G
Sbjct: 209 ---LVKMKFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDCLSELGP 265
Query: 1557 LCRSKGVIFHCDAAQAVGKI----------DINIQNYKVDLMSFSAHK-IYGPKGIGALY 1605
+C +G+ H DAA A I D +F+ K + +
Sbjct: 266 ICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIE----YADSFTFNPSKWMMVHFDCTGFW 321
Query: 1606 IRRNPRTRIEA---------QIHGGGH----EYGLRSG----------TLATHQIVGMGE 1642
+ ++ + + G + + + + + +
Sbjct: 322 V-KDKYKLQQTFSVNPIYLRHANSGVATDFMHWQIPLSRRFRSVKLWFVIRSFGVKNLQA 380
Query: 1643 AFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESL 1702
R EM + + ++ EI + + F SL
Sbjct: 381 HVR-HGTEMAKYFESLVRNDPSF---------EIPAKRHLG-------LVVFRLKGPNSL 423
Query: 1703 LMAIKDIAVSSGSA-CTSASLEPSYVLRALGCNDELAHSSIRFTIG-RFTTEKEIDFTIK 1760
+ +G A+++ ++ RFT+ +FTT +I
Sbjct: 424 TENVLKEIAKAGRLFLIPATIQDKLII--------------RFTVTSQFTTRDDILRDWN 469
Query: 1761 LLK 1763
L++
Sbjct: 470 LIR 472
|
| >2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} Length = 386 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 7e-05
Identities = 30/176 (17%), Positives = 69/176 (39%), Gaps = 26/176 (14%)
Query: 124 ITLSQLEEKICSDTILVSVMLVNNE--IGVIQPILEIGELCRSKGVIFHCDAAQAVGKID 181
+ L++ + + + +V + NE GV+ P+ E+ ++ + + DA A+G D
Sbjct: 132 VKPEDLDDALRKNPDVEAVTITYNETSTGVLNPLPELAKVAKEHDKLVFVDAVSAMGGAD 191
Query: 182 INIQNYKVDLMSFSAHKIYG-PKGIGAL--------YIRRNPRTR------IEAQIHGGG 226
I + +D++ S+ K +G P G+ + P + +
Sbjct: 192 IKFDKWGLDVVFSSSQKAFGVPPGLAIGAFSERFLEIAEKMPERGWYFDIPLYVKYLKEK 251
Query: 227 HEYGLRSGTLATHQIVGMGEAFRLARIEMKEE--LKRILFLQKRLYNGLMESIEEI 280
T Q+ G+ A R+ +++ ++ L + ++ + E + EI
Sbjct: 252 EST---PSTPPMPQVFGINVALRI----IEKMGGKEKWLEMYEKRAKMVREGVREI 300
|
| >2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} Length = 386 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 7e-05
Identities = 30/176 (17%), Positives = 69/176 (39%), Gaps = 26/176 (14%)
Query: 1520 ITLSQLEEKICSDTILVSVMLVNNE--IGVIQPILEIGELCRSKGVIFHCDAAQAVGKID 1577
+ L++ + + + +V + NE GV+ P+ E+ ++ + + DA A+G D
Sbjct: 132 VKPEDLDDALRKNPDVEAVTITYNETSTGVLNPLPELAKVAKEHDKLVFVDAVSAMGGAD 191
Query: 1578 INIQNYKVDLMSFSAHKIYG-PKGIGAL--------YIRRNPRTR------IEAQIHGGG 1622
I + +D++ S+ K +G P G+ + P + +
Sbjct: 192 IKFDKWGLDVVFSSSQKAFGVPPGLAIGAFSERFLEIAEKMPERGWYFDIPLYVKYLKEK 251
Query: 1623 HEYGLRSGTLATHQIVGMGEAFRLARIEMKEE--LKRILFLQKRLYNGLMESIEEI 1676
T Q+ G+ A R+ +++ ++ L + ++ + E + EI
Sbjct: 252 EST---PSTPPMPQVFGINVALRI----IEKMGGKEKWLEMYEKRAKMVREGVREI 300
|
| >2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A* Length = 353 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 7e-05
Identities = 31/160 (19%), Positives = 49/160 (30%), Gaps = 16/160 (10%)
Query: 110 GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNE--IGVIQPILEIGELCRSKGV 167
G L + + + + V LV+ E GV+ P IG L + G
Sbjct: 97 GLDPEVLDFPPGEPVDPEAVARALKRRRYRM-VALVHGETSTGVLNPAEAIGALAKEAGA 155
Query: 168 IFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYG-PKGIGALYIRRNPRTRIEA------ 220
+F DA +G + +++ VD + K P G+ + R
Sbjct: 156 LFFLDAVTTLGMLPFSMRAMGVDYAFTGSQKCLSAPPGLAPIAASLEARKAFTGKRGWYL 215
Query: 221 --QIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEE 258
E G T + EA L + EE
Sbjct: 216 DLARVAEHWERGGYHHTTPVLLHYALLEALDL----VLEE 251
|
| >2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A* Length = 353 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 7e-05
Identities = 31/160 (19%), Positives = 49/160 (30%), Gaps = 16/160 (10%)
Query: 1506 GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNE--IGVIQPILEIGELCRSKGV 1563
G L + + + + V LV+ E GV+ P IG L + G
Sbjct: 97 GLDPEVLDFPPGEPVDPEAVARALKRRRYRM-VALVHGETSTGVLNPAEAIGALAKEAGA 155
Query: 1564 IFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYG-PKGIGALYIRRNPRTRIEA------ 1616
+F DA +G + +++ VD + K P G+ + R
Sbjct: 156 LFFLDAVTTLGMLPFSMRAMGVDYAFTGSQKCLSAPPGLAPIAASLEARKAFTGKRGWYL 215
Query: 1617 --QIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEE 1654
E G T + EA L + EE
Sbjct: 216 DLARVAEHWERGGYHHTTPVLLHYALLEALDL----VLEE 251
|
| >2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A* Length = 467 | Back alignment and structure |
|---|
Score = 46.9 bits (111), Expect = 8e-05
Identities = 67/385 (17%), Positives = 108/385 (28%), Gaps = 80/385 (20%)
Query: 61 IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLD----------------SIR 104
I T + + I K+ + + ++R
Sbjct: 92 TIPTHQGRGAEQIYIPVLI----KKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTVR 147
Query: 105 KLENDGFRVTYLKPKNNGLITLSQLEEKI----CSDTILVSVMLVNNEI-GVIQP---IL 156
+ T ++ G L LE I ++ + + +N G +
Sbjct: 148 NVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLK 207
Query: 157 EIGELCRSKGVIFHCDAA---QAVGKIDINIQNYK--------------VDLMSFSAHKI 199
+ + + + D+A + I YK D+++ SA K
Sbjct: 208 AMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKD 267
Query: 200 YGPKGIGAL------YIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARI 253
G L + R + G YG G VG+ + L +
Sbjct: 268 AMVPMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWL 327
Query: 254 EMKEELKRILFLQKRLYNGLMESIEEIYING------DMNNRIPHNLNISFNFIEGESLL 307
RI +Q L +GL E G D +PH F L
Sbjct: 328 A-----YRIAQVQ-YLVDGLEEIGVVCQQAGGHAAFVDAGKLLPHIPADQFPAQALACEL 381
Query: 308 MAIKDI-AVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFT-TEKEIDFTIKL 365
+ I AV GS + G +R TI R T T+ +DF I+
Sbjct: 382 YKVAGIRAVEIGSFLLGRDPKT-------GKQLPCPAELLRLTIPRATYTQTHMDFIIEA 434
Query: 366 LK--------MKEFFMSYSEKVLDH 382
K +K +Y KVL H
Sbjct: 435 FKHVKENAANIKGLTFTYEPKVLRH 459
|
| >2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A* Length = 467 | Back alignment and structure |
|---|
Score = 46.9 bits (111), Expect = 8e-05
Identities = 67/385 (17%), Positives = 108/385 (28%), Gaps = 80/385 (20%)
Query: 1457 IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLD----------------SIR 1500
I T + + I K+ + + ++R
Sbjct: 92 TIPTHQGRGAEQIYIPVLI----KKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTVR 147
Query: 1501 KLENDGFRVTYLKPKNNGLITLSQLEEKI----CSDTILVSVMLVNNEI-GVIQP---IL 1552
+ T ++ G L LE I ++ + + +N G +
Sbjct: 148 NVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLK 207
Query: 1553 EIGELCRSKGVIFHCDAA---QAVGKIDINIQNYK--------------VDLMSFSAHKI 1595
+ + + + D+A + I YK D+++ SA K
Sbjct: 208 AMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKD 267
Query: 1596 YGPKGIGAL------YIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARI 1649
G L + R + G YG G VG+ + L +
Sbjct: 268 AMVPMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWL 327
Query: 1650 EMKEELKRILFLQKRLYNGLMESIEEIYING------DMNNRIPHNLNISFNFIEGESLL 1703
RI +Q L +GL E G D +PH F L
Sbjct: 328 A-----YRIAQVQ-YLVDGLEEIGVVCQQAGGHAAFVDAGKLLPHIPADQFPAQALACEL 381
Query: 1704 MAIKDI-AVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFT-TEKEIDFTIKL 1761
+ I AV GS + G +R TI R T T+ +DF I+
Sbjct: 382 YKVAGIRAVEIGSFLLGRDPKT-------GKQLPCPAELLRLTIPRATYTQTHMDFIIEA 434
Query: 1762 LK--------MKEFFMSYSEKVLDH 1778
K +K +Y KVL H
Sbjct: 435 FKHVKENAANIKGLTFTYEPKVLRH 459
|
| >3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A* Length = 393 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 8e-05
Identities = 35/171 (20%), Positives = 64/171 (37%), Gaps = 30/171 (17%)
Query: 110 GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNE--IGVIQPILEIGELCRSKGV 167
G RV + K TL ++EE + ++ + LV+ E GV+QP+ GELC
Sbjct: 121 GARVHQMIKKPGEHYTLQEVEEGLAQHKPVL-LFLVHGESSTGVVQPLDGFGELCHRYQC 179
Query: 168 IFHCDAAQAVGKIDINIQNYKVD---------LM-----SFSAHKIYGPKGIGALYIRRN 213
+ D+ ++G + I + +D L S + + K +Y R+
Sbjct: 180 LLLVDSVASLGGVPIYMDQQGIDIMYSSSQKVLNAPPGISLIS---FNDKAKYKVYSRKT 236
Query: 214 PRTR------IEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEE 258
A++ G E + T + + E+ L + E+
Sbjct: 237 KPVSFYTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLAL----IAEQ 283
|
| >3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A* Length = 393 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 8e-05
Identities = 35/171 (20%), Positives = 64/171 (37%), Gaps = 30/171 (17%)
Query: 1506 GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNE--IGVIQPILEIGELCRSKGV 1563
G RV + K TL ++EE + ++ + LV+ E GV+QP+ GELC
Sbjct: 121 GARVHQMIKKPGEHYTLQEVEEGLAQHKPVL-LFLVHGESSTGVVQPLDGFGELCHRYQC 179
Query: 1564 IFHCDAAQAVGKIDINIQNYKVD---------LM-----SFSAHKIYGPKGIGALYIRRN 1609
+ D+ ++G + I + +D L S + + K +Y R+
Sbjct: 180 LLLVDSVASLGGVPIYMDQQGIDIMYSSSQKVLNAPPGISLIS---FNDKAKYKVYSRKT 236
Query: 1610 PRTR------IEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEE 1654
A++ G E + T + + E+ L + E+
Sbjct: 237 KPVSFYTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLAL----IAEQ 283
|
| >3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale} Length = 376 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 2e-04
Identities = 28/151 (18%), Positives = 52/151 (34%), Gaps = 23/151 (15%)
Query: 142 VMLVNNE--IGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK- 198
+++ +E V+ + IGE C+ + F CD A N+ D+M + K
Sbjct: 148 LLVNVDETSTAVLYDTMMIGEFCKKNNMFFVCDCVSAFLADPFNMNECGADVMITGSQKV 207
Query: 199 IYGPKGIGALYIRRNPRTRIEA----------QIHGGGHEYGLRSGTLATHQIVGMGEAF 248
+ P GI + + R+E + E G T A ++ + E
Sbjct: 208 LACPPGISVIVLAPRGVERVEKSKVRTMYFDLKDALKNQERGQTPFTPAVGILLQINERL 267
Query: 249 RLARIEMKEE------LKRILFLQKRLYNGL 273
+ E+K+ + RI +
Sbjct: 268 K----EIKKHGGADAEVARIASQAADFRAKI 294
|
| >3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale} Length = 376 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 2e-04
Identities = 28/151 (18%), Positives = 52/151 (34%), Gaps = 23/151 (15%)
Query: 1538 VMLVNNE--IGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK- 1594
+++ +E V+ + IGE C+ + F CD A N+ D+M + K
Sbjct: 148 LLVNVDETSTAVLYDTMMIGEFCKKNNMFFVCDCVSAFLADPFNMNECGADVMITGSQKV 207
Query: 1595 IYGPKGIGALYIRRNPRTRIEA----------QIHGGGHEYGLRSGTLATHQIVGMGEAF 1644
+ P GI + + R+E + E G T A ++ + E
Sbjct: 208 LACPPGISVIVLAPRGVERVEKSKVRTMYFDLKDALKNQERGQTPFTPAVGILLQINERL 267
Query: 1645 RLARIEMKEE------LKRILFLQKRLYNGL 1669
+ E+K+ + RI +
Sbjct: 268 K----EIKKHGGADAEVARIASQAADFRAKI 294
|
| >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* Length = 486 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 2e-04
Identities = 52/359 (14%), Positives = 103/359 (28%), Gaps = 90/359 (25%)
Query: 64 TSGATESNNLAIKGAAHFYKKRGKHIITVQTE---------------HKSVLDSIRKLEN 108
A+E+ +A+ A +R + T+ H SV +
Sbjct: 145 QGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIG-- 202
Query: 109 DGFRVTYLKPKNNGLITLSQLEEKICSDTI--LVSVMLVNN----EIGVIQPILEIGELC 162
G ++ + + S L+E + D L+ +V +LE+G +C
Sbjct: 203 -GVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPIC 261
Query: 163 RSKGVIFHCDAAQA-VGKIDINIQNY-----KVDLMSFSAHK-IYGPKGIGALYIRRNPR 215
+ + H DAA A I ++ D +F+ HK + A+++ +
Sbjct: 262 HEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWV-KRRT 320
Query: 216 TRIEA---------QIHGGGH------EYGLRSG----------TLATHQIVGMGEAFRL 250
A H G + L G + + G+ R
Sbjct: 321 DLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIR- 379
Query: 251 ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI 310
+++ E + + R E+ + + F + L A+
Sbjct: 380 KHVQLSHEFEAFVLQDPRF---------EVCAEVTLG-------LVCFRLKGSDGLNEAL 423
Query: 311 KDIAVSSGSA-CTSASLEPSYVLRALGCNDELAHSSIRFTIG-RFTTEKEIDFTIKLLK 367
+ S+ L +VL RF I R + + ++
Sbjct: 424 LERINSARKIHLVPCRLRGQFVL--------------RFAICSRKVESGHVRLAWEHIR 468
|
| >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* Length = 486 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 2e-04
Identities = 52/359 (14%), Positives = 103/359 (28%), Gaps = 90/359 (25%)
Query: 1460 TSGATESNNLAIKGAAHFYKKRGKHIITVQTE---------------HKSVLDSIRKLEN 1504
A+E+ +A+ A +R + T+ H SV +
Sbjct: 145 QGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIG-- 202
Query: 1505 DGFRVTYLKPKNNGLITLSQLEEKICSDTI--LVSVMLVNN----EIGVIQPILEIGELC 1558
G ++ + + S L+E + D L+ +V +LE+G +C
Sbjct: 203 -GVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPIC 261
Query: 1559 RSKGVIFHCDAAQA-VGKIDINIQNY-----KVDLMSFSAHK-IYGPKGIGALYIRRNPR 1611
+ + H DAA A I ++ D +F+ HK + A+++ +
Sbjct: 262 HEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWV-KRRT 320
Query: 1612 TRIEA---------QIHGGGH------EYGLRSG----------TLATHQIVGMGEAFRL 1646
A H G + L G + + G+ R
Sbjct: 321 DLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIR- 379
Query: 1647 ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI 1706
+++ E + + R E+ + + F + L A+
Sbjct: 380 KHVQLSHEFEAFVLQDPRF---------EVCAEVTLG-------LVCFRLKGSDGLNEAL 423
Query: 1707 KDIAVSSGSA-CTSASLEPSYVLRALGCNDELAHSSIRFTIG-RFTTEKEIDFTIKLLK 1763
+ S+ L +VL RF I R + + ++
Sbjct: 424 LERINSARKIHLVPCRLRGQFVL--------------RFAICSRKVESGHVRLAWEHIR 468
|
| >3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} Length = 416 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 2e-04
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 110 GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNE--IGVIQPILEIGELCRSKGV 167
G V L+ + + + +I + V +V+ E G I P+ IGE CR++
Sbjct: 109 GANVHMLECEWGTVFDPEDIIREIKKVKPKI-VAMVHGETSTGRIHPLKAIGEACRTEDA 167
Query: 168 IFHCDAAQAVGKIDINIQNYKVD 190
+F DA +G ++ + +K+D
Sbjct: 168 LFIVDAVATIGGCEVKVDEWKID 190
|
| >3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} Length = 416 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 2e-04
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 1506 GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNE--IGVIQPILEIGELCRSKGV 1563
G V L+ + + + +I + V +V+ E G I P+ IGE CR++
Sbjct: 109 GANVHMLECEWGTVFDPEDIIREIKKVKPKI-VAMVHGETSTGRIHPLKAIGEACRTEDA 167
Query: 1564 IFHCDAAQAVGKIDINIQNYKVD 1586
+F DA +G ++ + +K+D
Sbjct: 168 LFIVDAVATIGGCEVKVDEWKID 190
|
| >3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum} Length = 357 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 3e-04
Identities = 38/233 (16%), Positives = 76/233 (32%), Gaps = 60/233 (25%)
Query: 64 TSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRV-----TYLKP 118
SG T + +A++ + + + H + E DG + T L
Sbjct: 69 PSG-TMAQQVALR--IWSDETDNRTVAYHPLCH------LEIHEQDGLKELHPIETILVG 119
Query: 119 KNNGLITLSQLEEKICSDTILVSVMLVNNEI-GVIQP---ILEIGELCRSKGVIFHCDAA 174
+ L+TL +++ D + + L EI GV + I CR +G+ H D A
Sbjct: 120 AADRLMTLDEIKALP--DIACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGA 177
Query: 175 ---QAVGKIDINIQNY--KVDLMS--FSAHKIYGPKGIGAL----------YIRRNPRTR 217
+ + + D + F KG+G + + + +
Sbjct: 178 RLFEMLPYYEKTAAEIAGLFDSIYISFY-------KGLGGIAGAILAGPAAFCQTARIWK 230
Query: 218 IEAQIHGGGHEYGLR-SGTLA-------THQIVGMGEAFRLARIEMKEELKRI 262
+ +GG L + MG+ + A+ ++ E+ +
Sbjct: 231 ---RRYGG----DLISLYPYIVSADYYYELRKDRMGQYYEQAK-QLAEQFNAL 275
|
| >3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum} Length = 357 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 3e-04
Identities = 38/233 (16%), Positives = 76/233 (32%), Gaps = 60/233 (25%)
Query: 1460 TSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRV-----TYLKP 1514
SG T + +A++ + + + H + E DG + T L
Sbjct: 69 PSG-TMAQQVALR--IWSDETDNRTVAYHPLCH------LEIHEQDGLKELHPIETILVG 119
Query: 1515 KNNGLITLSQLEEKICSDTILVSVMLVNNEI-GVIQP---ILEIGELCRSKGVIFHCDAA 1570
+ L+TL +++ D + + L EI GV + I CR +G+ H D A
Sbjct: 120 AADRLMTLDEIKALP--DIACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGA 177
Query: 1571 ---QAVGKIDINIQNY--KVDLMS--FSAHKIYGPKGIGAL----------YIRRNPRTR 1613
+ + + D + F KG+G + + + +
Sbjct: 178 RLFEMLPYYEKTAAEIAGLFDSIYISFY-------KGLGGIAGAILAGPAAFCQTARIWK 230
Query: 1614 IEAQIHGGGHEYGLR-SGTLA-------THQIVGMGEAFRLARIEMKEELKRI 1658
+ +GG L + MG+ + A+ ++ E+ +
Sbjct: 231 ---RRYGG----DLISLYPYIVSADYYYELRKDRMGQYYEQAK-QLAEQFNAL 275
|
| >1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3 Length = 352 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 3e-04
Identities = 22/151 (14%), Positives = 53/151 (35%), Gaps = 16/151 (10%)
Query: 142 VMLVNNE--IGVIQPILEIGELCRSKG--VIFHCDAAQAVGKIDINIQNYKVDLMSFSAH 197
++LV++E G + + + + K + D ++ ++ ++ VD + +
Sbjct: 125 LLLVHSETSTGALADLPALARAFKEKNPEGLVGADMVTSLLVGEVALEAMGVDAAASGSQ 184
Query: 198 KIYG-PKGIGALYIRRNPRTRIEA-------QIHGGGHEYGLRSGTLATHQIVGMGEAFR 249
K P G+G + + R++ + G + T A + ++ +
Sbjct: 185 KGLMCPPGLGFVALSPRALERLKPRGYYLDLARELKAQKEGESAWTPAINLVLAVAAVLE 244
Query: 250 LARIEMKEELKRILFLQKRLYNGLMESIEEI 280
+ L+ L L+ L EE
Sbjct: 245 E----VLPRLEEHLALKAWQNALLYGVGEEG 271
|
| >1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3 Length = 352 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 3e-04
Identities = 22/151 (14%), Positives = 53/151 (35%), Gaps = 16/151 (10%)
Query: 1538 VMLVNNE--IGVIQPILEIGELCRSKG--VIFHCDAAQAVGKIDINIQNYKVDLMSFSAH 1593
++LV++E G + + + + K + D ++ ++ ++ VD + +
Sbjct: 125 LLLVHSETSTGALADLPALARAFKEKNPEGLVGADMVTSLLVGEVALEAMGVDAAASGSQ 184
Query: 1594 KIYG-PKGIGALYIRRNPRTRIEA-------QIHGGGHEYGLRSGTLATHQIVGMGEAFR 1645
K P G+G + + R++ + G + T A + ++ +
Sbjct: 185 KGLMCPPGLGFVALSPRALERLKPRGYYLDLARELKAQKEGESAWTPAINLVLAVAAVLE 244
Query: 1646 LARIEMKEELKRILFLQKRLYNGLMESIEEI 1676
+ L+ L L+ L EE
Sbjct: 245 E----VLPRLEEHLALKAWQNALLYGVGEEG 271
|
| >3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A* Length = 715 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 9e-04
Identities = 26/150 (17%), Positives = 52/150 (34%), Gaps = 22/150 (14%)
Query: 39 AEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKS 98
++A +A++ AD R + T+G + +N + +A G I+ + HKS
Sbjct: 193 HSGPHKEAEQYIARVFNAD-RSYMVTNGTSTANKIVGMYSA----PAGSTILIDRNCHKS 247
Query: 99 VLDSIRKLENDGFRVTYLKPKNN-----GLITLSQLEEKICSDTI--------LVSVMLV 145
+ + Y +P N G I S+ + + + V ++
Sbjct: 248 LTHLMMMS---DVTPIYFRPTRNAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVIT 304
Query: 146 N-NEIGVIQPILEIGELCRSKGVIFHCDAA 174
N G++ I + K + F
Sbjct: 305 NSTYDGLLYNTDFIKKTLDVKSIHFDSAWV 334
|
| >3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A* Length = 715 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 9e-04
Identities = 26/150 (17%), Positives = 52/150 (34%), Gaps = 22/150 (14%)
Query: 1435 AEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKS 1494
++A +A++ AD R + T+G + +N + +A G I+ + HKS
Sbjct: 193 HSGPHKEAEQYIARVFNAD-RSYMVTNGTSTANKIVGMYSA----PAGSTILIDRNCHKS 247
Query: 1495 VLDSIRKLENDGFRVTYLKPKNN-----GLITLSQLEEKICSDTI--------LVSVMLV 1541
+ + Y +P N G I S+ + + + V ++
Sbjct: 248 LTHLMMMS---DVTPIYFRPTRNAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVIT 304
Query: 1542 N-NEIGVIQPILEIGELCRSKGVIFHCDAA 1570
N G++ I + K + F
Sbjct: 305 NSTYDGLLYNTDFIKKTLDVKSIHFDSAWV 334
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2602 | |||
| 4b9q_A | 605 | Chaperone protein DNAK; HET: ATP; 2.40A {Escherich | 100.0 | |
| 2kho_A | 605 | Heat shock protein 70; molecular chaperone, HSP70, | 100.0 | |
| 1yuw_A | 554 | Heat shock cognate 71 kDa protein; chaperone; 2.60 | 100.0 | |
| 4b9q_A | 605 | Chaperone protein DNAK; HET: ATP; 2.40A {Escherich | 100.0 | |
| 3d2f_A | 675 | Heat shock protein homolog SSE1; nucleotide exchan | 100.0 | |
| 2kho_A | 605 | Heat shock protein 70; molecular chaperone, HSP70, | 100.0 | |
| 2v7y_A | 509 | Chaperone protein DNAK; HSP70, heat shock protein, | 100.0 | |
| 1yuw_A | 554 | Heat shock cognate 71 kDa protein; chaperone; 2.60 | 100.0 | |
| 3d2f_A | 675 | Heat shock protein homolog SSE1; nucleotide exchan | 100.0 | |
| 2v7y_A | 509 | Chaperone protein DNAK; HSP70, heat shock protein, | 100.0 | |
| 1kon_A | 249 | Protein YEBC, YEBC; alpha/beta, two-domains, montr | 100.0 | |
| 1lfp_A | 249 | Hypothetical protein AQ_1575; NEW fold, thermostab | 100.0 | |
| 4f3q_A | 247 | Transcriptional regulatory protein CBU_1566; YEBC | 100.0 | |
| 1mw7_A | 240 | Hypothetical protein HP0162; structural genomics, | 100.0 | |
| 3i33_A | 404 | Heat shock-related 70 kDa protein 2; protein-ADP c | 100.0 | |
| 4gni_A | 409 | Putative heat shock protein; HSP70-type ATPase, AT | 100.0 | |
| 3qfu_A | 394 | 78 kDa glucose-regulated protein homolog; HSP70, K | 100.0 | |
| 4gni_A | 409 | Putative heat shock protein; HSP70-type ATPase, AT | 100.0 | |
| 1dkg_D | 383 | Molecular chaperone DNAK; HSP70, GRPE, nucleotide | 100.0 | |
| 3i33_A | 404 | Heat shock-related 70 kDa protein 2; protein-ADP c | 100.0 | |
| 3qfu_A | 394 | 78 kDa glucose-regulated protein homolog; HSP70, K | 100.0 | |
| 1dkg_D | 383 | Molecular chaperone DNAK; HSP70, GRPE, nucleotide | 100.0 | |
| 1jce_A | 344 | ROD shape-determining protein MREB; MBL, actin, HS | 100.0 | |
| 4hvk_A | 382 | Probable cysteine desulfurase 2; transferase and I | 100.0 | |
| 1jce_A | 344 | ROD shape-determining protein MREB; MBL, actin, HS | 100.0 | |
| 4eb5_A | 382 | Probable cysteine desulfurase 2; scaffold, transfe | 100.0 | |
| 3lvm_A | 423 | Cysteine desulfurase; structural genomics, montrea | 100.0 | |
| 4hvk_A | 382 | Probable cysteine desulfurase 2; transferase and I | 100.0 | |
| 1eg5_A | 384 | Aminotransferase; PLP-dependent enzymes, iron-sulf | 100.0 | |
| 3lvm_A | 423 | Cysteine desulfurase; structural genomics, montrea | 100.0 | |
| 4eb5_A | 382 | Probable cysteine desulfurase 2; scaffold, transfe | 100.0 | |
| 3vax_A | 400 | Putative uncharacterized protein DNDA; desulfurase | 100.0 | |
| 1eg5_A | 384 | Aminotransferase; PLP-dependent enzymes, iron-sulf | 100.0 | |
| 3vax_A | 400 | Putative uncharacterized protein DNDA; desulfurase | 100.0 | |
| 1kmj_A | 406 | Selenocysteine lyase; persulfide perselenide NIFS | 100.0 | |
| 3cai_A | 406 | Possible aminotransferase; RV3778C; 1.80A {Mycobac | 99.98 | |
| 3e77_A | 377 | Phosphoserine aminotransferase; SERC, PLP, structu | 99.97 | |
| 1t3i_A | 420 | Probable cysteine desulfurase; PLP-binding enzyme, | 99.97 | |
| 1kmj_A | 406 | Selenocysteine lyase; persulfide perselenide NIFS | 99.97 | |
| 3a9z_A | 432 | Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph | 99.97 | |
| 3cai_A | 406 | Possible aminotransferase; RV3778C; 1.80A {Mycobac | 99.97 | |
| 3qm2_A | 386 | Phosphoserine aminotransferase; structural genomic | 99.97 | |
| 3e77_A | 377 | Phosphoserine aminotransferase; SERC, PLP, structu | 99.97 | |
| 1t3i_A | 420 | Probable cysteine desulfurase; PLP-binding enzyme, | 99.97 | |
| 3a9z_A | 432 | Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph | 99.97 | |
| 1elu_A | 390 | L-cysteine/L-cystine C-S lyase; FES cluster biosyn | 99.96 | |
| 3qm2_A | 386 | Phosphoserine aminotransferase; structural genomic | 99.96 | |
| 1iug_A | 352 | Putative aspartate aminotransferase; wild type, py | 99.96 | |
| 3m5u_A | 361 | Phosphoserine aminotransferase; alpha-beta half sa | 99.96 | |
| 2z9v_A | 392 | Aspartate aminotransferase; pyridoxamine, pyruvate | 99.96 | |
| 3e9k_A | 465 | Kynureninase; kynurenine-L-hydrolase, kynurenine h | 99.96 | |
| 1elu_A | 390 | L-cysteine/L-cystine C-S lyase; FES cluster biosyn | 99.96 | |
| 3m5u_A | 361 | Phosphoserine aminotransferase; alpha-beta half sa | 99.96 | |
| 2huf_A | 393 | Alanine glyoxylate aminotransferase; alpha and bet | 99.96 | |
| 3ffr_A | 362 | Phosphoserine aminotransferase SERC; structural ge | 99.96 | |
| 1iug_A | 352 | Putative aspartate aminotransferase; wild type, py | 99.95 | |
| 2dr1_A | 386 | PH1308 protein, 386AA long hypothetical serine ami | 99.95 | |
| 2z9v_A | 392 | Aspartate aminotransferase; pyridoxamine, pyruvate | 99.95 | |
| 3zrp_A | 384 | Serine-pyruvate aminotransferase (AGXT); HET: PLP; | 99.95 | |
| 3e9k_A | 465 | Kynureninase; kynurenine-L-hydrolase, kynurenine h | 99.95 | |
| 2huf_A | 393 | Alanine glyoxylate aminotransferase; alpha and bet | 99.95 | |
| 2yrr_A | 353 | Aminotransferase, class V; structural genomics, NP | 99.95 | |
| 3isl_A | 416 | Purine catabolism protein PUCG; pyridoxalphosphate | 99.95 | |
| 3ffr_A | 362 | Phosphoserine aminotransferase SERC; structural ge | 99.95 | |
| 3isl_A | 416 | Purine catabolism protein PUCG; pyridoxalphosphate | 99.95 | |
| 3nnk_A | 411 | Ureidoglycine-glyoxylate aminotransferase; PLP-dep | 99.95 | |
| 1vjo_A | 393 | Alanine--glyoxylate aminotransferase; 17130350, AL | 99.95 | |
| 3zrp_A | 384 | Serine-pyruvate aminotransferase (AGXT); HET: PLP; | 99.95 | |
| 2dr1_A | 386 | PH1308 protein, 386AA long hypothetical serine ami | 99.95 | |
| 2e7j_A | 371 | SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st | 99.95 | |
| 3nnk_A | 411 | Ureidoglycine-glyoxylate aminotransferase; PLP-dep | 99.95 | |
| 2ch1_A | 396 | 3-hydroxykynurenine transaminase; PLP-enzyme, kynu | 99.95 | |
| 1qz9_A | 416 | Kynureninase; kynurenine, tryptophan, PLP, vitamin | 99.95 | |
| 2c0r_A | 362 | PSAT, phosphoserine aminotransferase; pyridoxal-5' | 99.95 | |
| 2yrr_A | 353 | Aminotransferase, class V; structural genomics, NP | 99.95 | |
| 3kgw_A | 393 | Alanine-glyoxylate aminotransferase; AAH25799.1, p | 99.94 | |
| 2ch1_A | 396 | 3-hydroxykynurenine transaminase; PLP-enzyme, kynu | 99.94 | |
| 3f0h_A | 376 | Aminotransferase; RER070207000802, structural geno | 99.94 | |
| 1w23_A | 360 | Phosphoserine aminotransferase; pyridoxal-5'-phosp | 99.94 | |
| 1vjo_A | 393 | Alanine--glyoxylate aminotransferase; 17130350, AL | 99.94 | |
| 2e7j_A | 371 | SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st | 99.94 | |
| 1m32_A | 366 | 2-aminoethylphosphonate-pyruvate aminotransferase; | 99.94 | |
| 3kgw_A | 393 | Alanine-glyoxylate aminotransferase; AAH25799.1, p | 99.94 | |
| 2c0r_A | 362 | PSAT, phosphoserine aminotransferase; pyridoxal-5' | 99.94 | |
| 3ffh_A | 363 | Histidinol-phosphate aminotransferase; APC88260, l | 99.94 | |
| 3f0h_A | 376 | Aminotransferase; RER070207000802, structural geno | 99.94 | |
| 1qz9_A | 416 | Kynureninase; kynurenine, tryptophan, PLP, vitamin | 99.94 | |
| 1m32_A | 366 | 2-aminoethylphosphonate-pyruvate aminotransferase; | 99.94 | |
| 3get_A | 365 | Histidinol-phosphate aminotransferase; NP_281508.1 | 99.93 | |
| 3f9t_A | 397 | TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L | 99.93 | |
| 1w23_A | 360 | Phosphoserine aminotransferase; pyridoxal-5'-phosp | 99.93 | |
| 3f9t_A | 397 | TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L | 99.93 | |
| 3euc_A | 367 | Histidinol-phosphate aminotransferase 2; YP_297314 | 99.93 | |
| 2bkw_A | 385 | Alanine-glyoxylate aminotransferase 1; analine-gly | 99.93 | |
| 3ly1_A | 354 | Putative histidinol-phosphate aminotransferase; st | 99.93 | |
| 3p1t_A | 337 | Putative histidinol-phosphate aminotransferase; PL | 99.93 | |
| 4dq6_A | 391 | Putative pyridoxal phosphate-dependent transferas; | 99.93 | |
| 2bkw_A | 385 | Alanine-glyoxylate aminotransferase 1; analine-gly | 99.93 | |
| 3ffh_A | 363 | Histidinol-phosphate aminotransferase; APC88260, l | 99.93 | |
| 3dzz_A | 391 | Putative pyridoxal 5'-phosphate-dependent C-S LYA; | 99.92 | |
| 2dgk_A | 452 | GAD-beta, GADB, glutamate decarboxylase beta; gadb | 99.92 | |
| 1v2d_A | 381 | Glutamine aminotransferase; PLP, riken structural | 99.92 | |
| 1b5p_A | 385 | Protein (aspartate aminotransferase); pyridoxal en | 99.92 | |
| 3get_A | 365 | Histidinol-phosphate aminotransferase; NP_281508.1 | 99.92 | |
| 2fnu_A | 375 | Aminotransferase; protein-product complex, structu | 99.92 | |
| 3hbx_A | 502 | GAD 1, glutamate decarboxylase 1; calmodulin-bindi | 99.92 | |
| 2dgk_A | 452 | GAD-beta, GADB, glutamate decarboxylase beta; gadb | 99.92 | |
| 3kax_A | 383 | Aminotransferase, classes I and II; PLP, C-S lyase | 99.92 | |
| 3euc_A | 367 | Histidinol-phosphate aminotransferase 2; YP_297314 | 99.92 | |
| 3hdo_A | 360 | Histidinol-phosphate aminotransferase; PSI-II, his | 99.92 | |
| 3ly1_A | 354 | Putative histidinol-phosphate aminotransferase; st | 99.92 | |
| 1rv3_A | 483 | Serine hydroxymethyltransferase, cytosolic; one-ca | 99.92 | |
| 3ke3_A | 379 | Putative serine-pyruvate aminotransferase; structu | 99.92 | |
| 1fg7_A | 356 | Histidinol phosphate aminotransferase; HISC, histi | 99.92 | |
| 1gd9_A | 389 | Aspartate aminotransferase; pyridoxal enzyme, temp | 99.92 | |
| 1b5p_A | 385 | Protein (aspartate aminotransferase); pyridoxal en | 99.92 | |
| 3p1t_A | 337 | Putative histidinol-phosphate aminotransferase; PL | 99.92 | |
| 3ke3_A | 379 | Putative serine-pyruvate aminotransferase; structu | 99.92 | |
| 3hbx_A | 502 | GAD 1, glutamate decarboxylase 1; calmodulin-bindi | 99.92 | |
| 1rv3_A | 483 | Serine hydroxymethyltransferase, cytosolic; one-ca | 99.92 | |
| 4dq6_A | 391 | Putative pyridoxal phosphate-dependent transferas; | 99.91 | |
| 3ftb_A | 361 | Histidinol-phosphate aminotransferase; structural | 99.91 | |
| 2z61_A | 370 | Probable aspartate aminotransferase 2; amino acid | 99.91 | |
| 3dyd_A | 427 | Tyrosine aminotransferase; PLP, SGC, structural ge | 99.91 | |
| 3a2b_A | 398 | Serine palmitoyltransferase; vitamin B6-dependent | 99.91 | |
| 2z67_A | 456 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.91 | |
| 2fsj_A | 346 | Hypothetical protein TA0583; actin homologs, archa | 99.91 | |
| 1u08_A | 386 | Hypothetical aminotransferase YBDL; alpha beta pro | 99.91 | |
| 1j32_A | 388 | Aspartate aminotransferase; HET: PLP; 2.10A {Phorm | 99.91 | |
| 1v2d_A | 381 | Glutamine aminotransferase; PLP, riken structural | 99.91 | |
| 3g0t_A | 437 | Putative aminotransferase; NP_905498.1, putative a | 99.91 | |
| 3dzz_A | 391 | Putative pyridoxal 5'-phosphate-dependent C-S LYA; | 99.91 | |
| 2fnu_A | 375 | Aminotransferase; protein-product complex, structu | 99.91 | |
| 3cq5_A | 369 | Histidinol-phosphate aminotransferase; PLP, PMP, a | 99.91 | |
| 2o0r_A | 411 | RV0858C (N-succinyldiaminopimelate aminotransfera; | 99.91 | |
| 3fdb_A | 377 | Beta C-S lyase, putative PLP-dependent beta-cystat | 99.91 | |
| 2w8t_A | 427 | SPT, serine palmitoyltransferase; HET: LLP; 1.25A | 99.91 | |
| 1lc5_A | 364 | COBD, L-threonine-O-3-phosphate decarboxylase; PLP | 99.91 | |
| 1xi9_A | 406 | Putative transaminase; alanine aminotransferase, s | 99.91 | |
| 3mc6_A | 497 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.91 | |
| 3kax_A | 383 | Aminotransferase, classes I and II; PLP, C-S lyase | 99.91 | |
| 1o4s_A | 389 | Aspartate aminotransferase; TM1255, structural gen | 99.91 | |
| 1bw0_A | 416 | TAT, protein (tyrosine aminotransferase); tyrosine | 99.91 | |
| 1wyu_A | 438 | Glycine dehydrogenase (decarboxylating) subunit 1; | 99.91 | |
| 3mad_A | 514 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.9 | |
| 2jis_A | 515 | Cysteine sulfinic acid decarboxylase; pyridoxal ph | 99.9 | |
| 3l8a_A | 421 | METC, putative aminotransferase, probable beta-cys | 99.9 | |
| 1bs0_A | 384 | Protein (8-amino-7-oxonanoate synthase); PLP-depen | 99.9 | |
| 3h1q_A | 272 | Ethanolamine utilization protein EUTJ; ethanolamin | 99.9 | |
| 1j32_A | 388 | Aspartate aminotransferase; HET: PLP; 2.10A {Phorm | 99.9 | |
| 1gd9_A | 389 | Aspartate aminotransferase; pyridoxal enzyme, temp | 99.9 | |
| 3h14_A | 391 | Aminotransferase, classes I and II; YP_167802.1, S | 99.9 | |
| 3mc6_A | 497 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.9 | |
| 2dou_A | 376 | Probable N-succinyldiaminopimelate aminotransfera; | 99.9 | |
| 2qma_A | 497 | Diaminobutyrate-pyruvate transaminase and L-2,4- d | 99.9 | |
| 3hdo_A | 360 | Histidinol-phosphate aminotransferase; PSI-II, his | 99.9 | |
| 2fyf_A | 398 | PSAT, phosphoserine aminotransferase; PLP-dependen | 99.9 | |
| 3nra_A | 407 | Aspartate aminotransferase; structural genomics, j | 99.9 | |
| 1c7n_A | 399 | Cystalysin; transferase, aminotransferase, pyridox | 99.9 | |
| 2z61_A | 370 | Probable aspartate aminotransferase 2; amino acid | 99.9 | |
| 3ele_A | 398 | Amino transferase; RER070207001803, structural gen | 99.9 | |
| 3dqg_A | 151 | Heat shock 70 kDa protein F; structural genomics, | 99.9 | |
| 3dob_A | 152 | Heat shock 70 kDa protein F44E5.5; structural geno | 99.9 | |
| 1yiz_A | 429 | Kynurenine aminotransferase; glutamine transaminas | 99.9 | |
| 1fg7_A | 356 | Histidinol phosphate aminotransferase; HISC, histi | 99.9 | |
| 3ftb_A | 361 | Histidinol-phosphate aminotransferase; structural | 99.9 | |
| 2fq6_A | 415 | Cystathionine beta-lyase; protein-inhibitor comple | 99.9 | |
| 2o1b_A | 404 | Aminotransferase, class I; aminotrasferase; HET: P | 99.9 | |
| 2x5d_A | 412 | Probable aminotransferase; HET: LLP PLP; 2.25A {Ps | 99.9 | |
| 1xi9_A | 406 | Putative transaminase; alanine aminotransferase, s | 99.9 | |
| 1d2f_A | 390 | MALY protein; aminotransferase fold, large PLP-bin | 99.9 | |
| 3frk_A | 373 | QDTB; aminotransferase, sugar-modification, natura | 99.9 | |
| 2gb3_A | 409 | Aspartate aminotransferase; TM1698, structural gen | 99.9 | |
| 3dyd_A | 427 | Tyrosine aminotransferase; PLP, SGC, structural ge | 99.9 | |
| 2ych_A | 377 | Competence protein PILM; cell cycle, type IV pilus | 99.9 | |
| 2fsj_A | 346 | Hypothetical protein TA0583; actin homologs, archa | 99.9 | |
| 3tqx_A | 399 | 2-amino-3-ketobutyrate coenzyme A ligase; energy m | 99.9 | |
| 3uwc_A | 374 | Nucleotide-sugar aminotransferase; lipopolysacchar | 99.9 | |
| 2rfv_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate, PL | 99.9 | |
| 3mad_A | 514 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.9 | |
| 1fc4_A | 401 | 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino | 99.9 | |
| 3a2b_A | 398 | Serine palmitoyltransferase; vitamin B6-dependent | 99.9 | |
| 1svv_A | 359 | Threonine aldolase; structural genomics, structura | 99.9 | |
| 2zyj_A | 397 | Alpha-aminodipate aminotransferase; alpha-aminoadi | 99.9 | |
| 1u08_A | 386 | Hypothetical aminotransferase YBDL; alpha beta pro | 99.9 | |
| 1wyu_A | 438 | Glycine dehydrogenase (decarboxylating) subunit 1; | 99.9 | |
| 1o4s_A | 389 | Aspartate aminotransferase; TM1255, structural gen | 99.9 | |
| 1bw0_A | 416 | TAT, protein (tyrosine aminotransferase); tyrosine | 99.9 | |
| 3frk_A | 373 | QDTB; aminotransferase, sugar-modification, natura | 99.9 | |
| 3g0t_A | 437 | Putative aminotransferase; NP_905498.1, putative a | 99.9 | |
| 3jtx_A | 396 | Aminotransferase; NP_283882.1, structural genomics | 99.9 | |
| 3h14_A | 391 | Aminotransferase, classes I and II; YP_167802.1, S | 99.9 | |
| 1gc0_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate; HE | 99.9 | |
| 2w8t_A | 427 | SPT, serine palmitoyltransferase; HET: LLP; 1.25A | 99.9 | |
| 3h0x_A | 152 | 78 kDa glucose-regulated protein homolog; structur | 99.9 | |
| 3aow_A | 448 | Putative uncharacterized protein PH0207; protein-P | 99.89 | |
| 3b46_A | 447 | Aminotransferase BNA3; kynurenine aminotransferase | 99.89 | |
| 3fvs_A | 422 | Kynurenine--oxoglutarate transaminase 1; alpha bet | 99.89 | |
| 2dou_A | 376 | Probable N-succinyldiaminopimelate aminotransfera; | 99.89 | |
| 2bwn_A | 401 | 5-aminolevulinate synthase; tetrapyrrole biosynthe | 99.89 | |
| 1pff_A | 331 | Methionine gamma-lyase; homocysteine; 2.50A {Trich | 99.89 | |
| 2okj_A | 504 | Glutamate decarboxylase 1; PLP-dependent decarboxy | 99.89 | |
| 1wyu_B | 474 | Glycine dehydrogenase subunit 2 (P-protein); alpha | 99.89 | |
| 2jis_A | 515 | Cysteine sulfinic acid decarboxylase; pyridoxal ph | 99.89 | |
| 1vp4_A | 425 | Aminotransferase, putative; structural genomics, j | 99.89 | |
| 3b8x_A | 390 | WBDK, pyridoxamine 5-phosphate-dependent dehydrase | 99.89 | |
| 2z67_A | 456 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.89 | |
| 3fdb_A | 377 | Beta C-S lyase, putative PLP-dependent beta-cystat | 99.89 | |
| 3cq5_A | 369 | Histidinol-phosphate aminotransferase; PLP, PMP, a | 99.89 | |
| 1lc5_A | 364 | COBD, L-threonine-O-3-phosphate decarboxylase; PLP | 99.89 | |
| 3fkd_A | 350 | L-threonine-O-3-phosphate decarboxylase; structura | 99.89 | |
| 3n8e_A | 182 | Stress-70 protein, mitochondrial; beta-sandwich, h | 99.89 | |
| 2o0r_A | 411 | RV0858C (N-succinyldiaminopimelate aminotransfera; | 99.89 | |
| 3l8a_A | 421 | METC, putative aminotransferase, probable beta-cys | 99.89 | |
| 3h1q_A | 272 | Ethanolamine utilization protein EUTJ; ethanolamin | 99.89 | |
| 1qgn_A | 445 | Protein (cystathionine gamma-synthase); methionine | 99.89 | |
| 3e2y_A | 410 | Kynurenine-oxoglutarate transaminase 3; alpha beta | 99.89 | |
| 1bs0_A | 384 | Protein (8-amino-7-oxonanoate synthase); PLP-depen | 99.89 | |
| 1c7n_A | 399 | Cystalysin; transferase, aminotransferase, pyridox | 99.89 | |
| 2fyf_A | 398 | PSAT, phosphoserine aminotransferase; PLP-dependen | 99.89 | |
| 2zc0_A | 407 | Alanine glyoxylate transaminase; alanine:glyoxylat | 99.89 | |
| 4e81_A | 219 | Chaperone protein DNAK; chaperone; 1.90A {Escheric | 99.89 | |
| 1d2f_A | 390 | MALY protein; aminotransferase fold, large PLP-bin | 99.89 | |
| 3ele_A | 398 | Amino transferase; RER070207001803, structural gen | 99.89 | |
| 3b46_A | 447 | Aminotransferase BNA3; kynurenine aminotransferase | 99.89 | |
| 1iay_A | 428 | ACC synthase 2, 1-aminocyclopropane-1-carboxylate | 99.89 | |
| 2gb3_A | 409 | Aspartate aminotransferase; TM1698, structural gen | 99.89 | |
| 2x5d_A | 412 | Probable aminotransferase; HET: LLP PLP; 2.25A {Ps | 99.89 | |
| 3op7_A | 375 | Aminotransferase class I and II; PLP-dependent tra | 99.89 | |
| 3nra_A | 407 | Aspartate aminotransferase; structural genomics, j | 99.89 | |
| 1b9h_A | 388 | AHBA synthase, protein (3-amino-5-hydroxybenzoic a | 99.89 | |
| 2qma_A | 497 | Diaminobutyrate-pyruvate transaminase and L-2,4- d | 99.89 | |
| 3ezs_A | 376 | Aminotransferase ASPB; NP_207418.1, structural gen | 99.89 | |
| 3b8x_A | 390 | WBDK, pyridoxamine 5-phosphate-dependent dehydrase | 99.88 | |
| 1wyu_B | 474 | Glycine dehydrogenase subunit 2 (P-protein); alpha | 99.88 | |
| 2cb1_A | 412 | O-acetyl homoserine sulfhydrylase; PLP enzyme, lya | 99.88 | |
| 1uu1_A | 335 | Histidinol-phosphate aminotransferase; histidine b | 99.88 | |
| 1n8p_A | 393 | Cystathionine gamma-lyase; three open alpha/beta s | 99.88 | |
| 2vi8_A | 405 | Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, | 99.88 | |
| 2o1b_A | 404 | Aminotransferase, class I; aminotrasferase; HET: P | 99.88 | |
| 3uwc_A | 374 | Nucleotide-sugar aminotransferase; lipopolysacchar | 99.88 | |
| 2fq6_A | 415 | Cystathionine beta-lyase; protein-inhibitor comple | 99.88 | |
| 1yiz_A | 429 | Kynurenine aminotransferase; glutamine transaminas | 99.88 | |
| 2zyj_A | 397 | Alpha-aminodipate aminotransferase; alpha-aminoadi | 99.88 | |
| 1js3_A | 486 | DDC;, DOPA decarboxylase; carbidopa, parkinson'S d | 99.88 | |
| 3lvl_A | 129 | NIFU-like protein; protein-protein complex, struct | 99.88 | |
| 3if2_A | 444 | Aminotransferase; YP_265399.1, structura genomics, | 99.88 | |
| 2ych_A | 377 | Competence protein PILM; cell cycle, type IV pilus | 99.88 | |
| 2okj_A | 504 | Glutamate decarboxylase 1; PLP-dependent decarboxy | 99.88 | |
| 3nyt_A | 367 | Aminotransferase WBPE; PLP binding, nucleotide-sug | 99.88 | |
| 3aow_A | 448 | Putative uncharacterized protein PH0207; protein-P | 99.88 | |
| 3tqx_A | 399 | 2-amino-3-ketobutyrate coenzyme A ligase; energy m | 99.88 | |
| 3qgu_A | 449 | LL-diaminopimelate aminotransferase; L-lysine, pyr | 99.88 | |
| 1svv_A | 359 | Threonine aldolase; structural genomics, structura | 99.88 | |
| 3op7_A | 375 | Aminotransferase class I and II; PLP-dependent tra | 99.88 | |
| 3lvl_A | 129 | NIFU-like protein; protein-protein complex, struct | 99.88 | |
| 1fc4_A | 401 | 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino | 99.88 | |
| 1js3_A | 486 | DDC;, DOPA decarboxylase; carbidopa, parkinson'S d | 99.88 | |
| 3fvs_A | 422 | Kynurenine--oxoglutarate transaminase 1; alpha bet | 99.88 | |
| 3vp6_A | 511 | Glutamate decarboxylase 1; catalytic loop SWAP, ly | 99.88 | |
| 2rfv_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate, PL | 99.88 | |
| 1o69_A | 394 | Aminotransferase; structural genomics, unknown fun | 99.88 | |
| 3jtx_A | 396 | Aminotransferase; NP_283882.1, structural genomics | 99.88 | |
| 3vp6_A | 511 | Glutamate decarboxylase 1; catalytic loop SWAP, ly | 99.88 | |
| 3piu_A | 435 | 1-aminocyclopropane-1-carboxylate synthase; fruit | 99.88 | |
| 1pff_A | 331 | Methionine gamma-lyase; homocysteine; 2.50A {Trich | 99.87 | |
| 3dqg_A | 151 | Heat shock 70 kDa protein F; structural genomics, | 99.87 | |
| 2r2n_A | 425 | Kynurenine/alpha-aminoadipate aminotransferase mit | 99.87 | |
| 3ezs_A | 376 | Aminotransferase ASPB; NP_207418.1, structural gen | 99.87 | |
| 3ei9_A | 432 | LL-diaminopimelate aminotransferase; lysine biosyn | 99.87 | |
| 1mdo_A | 393 | ARNB aminotransferase; type 1 aminotransferase fol | 99.87 | |
| 1b9h_A | 388 | AHBA synthase, protein (3-amino-5-hydroxybenzoic a | 99.87 | |
| 1vp4_A | 425 | Aminotransferase, putative; structural genomics, j | 99.87 | |
| 2a7v_A | 490 | Serine hydroxymethyltransferase; structural genomi | 99.87 | |
| 2oga_A | 399 | Transaminase; PLP-dependent enzyme, desosamine, de | 99.87 | |
| 2c81_A | 418 | Glutamine-2-deoxy-scyllo-inosose aminotransferase; | 99.87 | |
| 1k8k_A | 418 | ARP3, actin-like protein 3, actin-2; beta-propelle | 99.87 | |
| 2zc0_A | 407 | Alanine glyoxylate transaminase; alanine:glyoxylat | 99.87 | |
| 1qgn_A | 445 | Protein (cystathionine gamma-synthase); methionine | 99.87 | |
| 2bwn_A | 401 | 5-aminolevulinate synthase; tetrapyrrole biosynthe | 99.87 | |
| 2x3l_A | 446 | ORN/Lys/Arg decarboxylase family protein; lyase; H | 99.87 | |
| 3qhx_A | 392 | Cystathionine gamma-synthase METB (CGS); structura | 99.87 | |
| 1v72_A | 356 | Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2 | 99.87 | |
| 1gc0_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate; HE | 99.87 | |
| 3g7q_A | 417 | Valine-pyruvate aminotransferase; NP_462565.1, str | 99.87 | |
| 3e2y_A | 410 | Kynurenine-oxoglutarate transaminase 3; alpha beta | 99.87 | |
| 3if2_A | 444 | Aminotransferase; YP_265399.1, structura genomics, | 99.87 | |
| 2cb1_A | 412 | O-acetyl homoserine sulfhydrylase; PLP enzyme, lya | 99.87 | |
| 3dr4_A | 391 | Putative perosamine synthetase; deoxysugar, pyrido | 99.87 | |
| 3asa_A | 400 | LL-diaminopimelate aminotransferase; PLP dependent | 99.87 | |
| 4a2a_A | 419 | Cell division protein FTSA, putative; cell cycle, | 99.87 | |
| 1o69_A | 394 | Aminotransferase; structural genomics, unknown fun | 99.87 | |
| 3dob_A | 152 | Heat shock 70 kDa protein F44E5.5; structural geno | 99.87 | |
| 3nyt_A | 367 | Aminotransferase WBPE; PLP binding, nucleotide-sug | 99.87 | |
| 3kki_A | 409 | CAI-1 autoinducer synthase; quorum sensing, CQSA, | 99.87 | |
| 2z7e_A | 157 | ISCU protein, NIFU-like protein; iron-sulfur clust | 99.87 | |
| 3tcm_A | 500 | Alanine aminotransferase 2; pyridoxal phosphate (P | 99.87 | |
| 3ju7_A | 377 | Putative PLP-dependent aminotransferase; NP_978343 | 99.87 | |
| 3fkd_A | 350 | L-threonine-O-3-phosphate decarboxylase; structura | 99.87 | |
| 1n8p_A | 393 | Cystathionine gamma-lyase; three open alpha/beta s | 99.87 | |
| 3dr4_A | 391 | Putative perosamine synthetase; deoxysugar, pyrido | 99.87 | |
| 1e5e_A | 404 | MGL, methionine gamma-lyase; methionine biosynthes | 99.87 | |
| 2vi8_A | 405 | Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, | 99.87 | |
| 1iay_A | 428 | ACC synthase 2, 1-aminocyclopropane-1-carboxylate | 99.86 | |
| 3tcm_A | 500 | Alanine aminotransferase 2; pyridoxal phosphate (P | 99.86 | |
| 2r2n_A | 425 | Kynurenine/alpha-aminoadipate aminotransferase mit | 99.86 | |
| 3h0x_A | 152 | 78 kDa glucose-regulated protein homolog; structur | 99.86 | |
| 3bb8_A | 437 | CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat | 99.86 | |
| 4eb5_C | 153 | NIFU protein (NIFU-1); scaffold, transferase-metal | 99.86 | |
| 2z7e_A | 157 | ISCU protein, NIFU-like protein; iron-sulfur clust | 99.86 | |
| 4e1o_A | 481 | HDC, histidine decarboxylase; lyase; HET: PLP PVH; | 99.86 | |
| 2dkj_A | 407 | Serine hydroxymethyltransferase; PLP dependent enz | 99.86 | |
| 2x3l_A | 446 | ORN/Lys/Arg decarboxylase family protein; lyase; H | 99.86 | |
| 3piu_A | 435 | 1-aminocyclopropane-1-carboxylate synthase; fruit | 99.86 | |
| 2oga_A | 399 | Transaminase; PLP-dependent enzyme, desosamine, de | 99.86 | |
| 3k40_A | 475 | Aromatic-L-amino-acid decarboxylase; PLP dependent | 99.86 | |
| 3ju7_A | 377 | Putative PLP-dependent aminotransferase; NP_978343 | 99.86 | |
| 1mdo_A | 393 | ARNB aminotransferase; type 1 aminotransferase fol | 99.86 | |
| 3qgu_A | 449 | LL-diaminopimelate aminotransferase; L-lysine, pyr | 99.86 | |
| 1cs1_A | 386 | CGS, protein (cystathionine gamma-synthase); lyase | 99.86 | |
| 3kki_A | 409 | CAI-1 autoinducer synthase; quorum sensing, CQSA, | 99.86 | |
| 3k40_A | 475 | Aromatic-L-amino-acid decarboxylase; PLP dependent | 99.86 | |
| 3ndn_A | 414 | O-succinylhomoserine sulfhydrylase; seattle struct | 99.86 | |
| 3cog_A | 403 | Cystathionine gamma-lyase; CTH, PLP, propargylglyc | 99.86 | |
| 4eb5_C | 153 | NIFU protein (NIFU-1); scaffold, transferase-metal | 99.86 | |
| 2fxu_A | 375 | Alpha-actin-1, actin, alpha skeletal muscle; actin | 99.86 | |
| 2c81_A | 418 | Glutamine-2-deoxy-scyllo-inosose aminotransferase; | 99.86 | |
| 3acz_A | 389 | Methionine gamma-lyase; L-methionine; HET: LLP; 1. | 99.86 | |
| 1uu1_A | 335 | Histidinol-phosphate aminotransferase; histidine b | 99.86 | |
| 3ez1_A | 423 | Aminotransferase MOCR family; YP_604413.1, struct | 99.85 | |
| 4e1o_A | 481 | HDC, histidine decarboxylase; lyase; HET: PLP PVH; | 99.85 | |
| 3n8e_A | 182 | Stress-70 protein, mitochondrial; beta-sandwich, h | 99.85 | |
| 3g7q_A | 417 | Valine-pyruvate aminotransferase; NP_462565.1, str | 99.85 | |
| 3ei9_A | 432 | LL-diaminopimelate aminotransferase; lysine biosyn | 99.85 | |
| 2qq4_A | 138 | Iron-sulfur cluster biosynthesis protein ISCU; zin | 99.85 | |
| 3n0l_A | 417 | Serine hydroxymethyltransferase; alpha beta class, | 99.85 | |
| 4e81_A | 219 | Chaperone protein DNAK; chaperone; 1.90A {Escheric | 99.85 | |
| 2dkj_A | 407 | Serine hydroxymethyltransferase; PLP dependent enz | 99.85 | |
| 2op6_A | 152 | Heat shock 70 kDa protein D; HSP70/peptide-binding | 99.85 | |
| 3qhx_A | 392 | Cystathionine gamma-synthase METB (CGS); structura | 99.85 | |
| 2x5f_A | 430 | Aspartate_tyrosine_phenylalanine pyridoxal-5' phos | 99.85 | |
| 3ppl_A | 427 | Aspartate aminotransferase; dimer, PLP-dependent t | 99.85 | |
| 3n0l_A | 417 | Serine hydroxymethyltransferase; alpha beta class, | 99.85 | |
| 1k8k_A | 418 | ARP3, actin-like protein 3, actin-2; beta-propelle | 99.85 | |
| 1jg8_A | 347 | L-ALLO-threonine aldolase; glycine biosynthesis, p | 99.85 | |
| 3bb8_A | 437 | CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat | 99.85 | |
| 2qq4_A | 138 | Iron-sulfur cluster biosynthesis protein ISCU; zin | 99.85 | |
| 3d6k_A | 422 | Putative aminotransferase; APC82464, corynebacteri | 99.85 | |
| 4a2a_A | 419 | Cell division protein FTSA, putative; cell cycle, | 99.85 | |
| 2a7v_A | 490 | Serine hydroxymethyltransferase; structural genomi | 99.85 | |
| 1v72_A | 356 | Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2 | 99.85 | |
| 2ctz_A | 421 | O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac | 99.85 | |
| 1ibj_A | 464 | CBL, cystathionine beta-lyase; PLP-dependent enzym | 99.85 | |
| 3ez1_A | 423 | Aminotransferase MOCR family; YP_604413.1, struct | 99.85 | |
| 2po3_A | 424 | 4-dehydrase; external aldimine, PLP, aminotransfer | 99.85 | |
| 1e5e_A | 404 | MGL, methionine gamma-lyase; methionine biosynthes | 99.85 | |
| 1cs1_A | 386 | CGS, protein (cystathionine gamma-synthase); lyase | 99.84 | |
| 2eh6_A | 375 | Acoat, acetylornithine aminotransferase; ARGD, str | 99.84 | |
| 1c4k_A | 730 | Protein (ornithine decarboxylase); lyase; HET: PLP | 99.84 | |
| 3rq1_A | 418 | Aminotransferase class I and II; structural genomi | 99.84 | |
| 3ihj_A | 498 | Alanine aminotransferase 2; helix, structural geno | 99.84 | |
| 3ppl_A | 427 | Aspartate aminotransferase; dimer, PLP-dependent t | 99.84 | |
| 2x5f_A | 430 | Aspartate_tyrosine_phenylalanine pyridoxal-5' phos | 99.84 | |
| 2po3_A | 424 | 4-dehydrase; external aldimine, PLP, aminotransfer | 99.84 | |
| 3gbx_A | 420 | Serine hydroxymethyltransferase; structural genomi | 99.84 | |
| 3cog_A | 403 | Cystathionine gamma-lyase; CTH, PLP, propargylglyc | 99.84 | |
| 3asa_A | 400 | LL-diaminopimelate aminotransferase; PLP dependent | 99.84 | |
| 3ruy_A | 392 | Ornithine aminotransferase; structural genomics, c | 99.84 | |
| 3d6k_A | 422 | Putative aminotransferase; APC82464, corynebacteri | 99.84 | |
| 3fsl_A | 397 | Aromatic-amino-acid aminotransferase; tyrosine ami | 99.84 | |
| 3t18_A | 413 | Aminotransferase class I and II; PSI-biology, MCSG | 99.83 | |
| 1q5l_A | 135 | Chaperone protein DNAK; HSP70, chaperone, heat sho | 99.83 | |
| 3acz_A | 389 | Methionine gamma-lyase; L-methionine; HET: LLP; 1. | 99.83 | |
| 3ndn_A | 414 | O-succinylhomoserine sulfhydrylase; seattle struct | 99.83 | |
| 2fxu_A | 375 | Alpha-actin-1, actin, alpha skeletal muscle; actin | 99.83 | |
| 3ihj_A | 498 | Alanine aminotransferase 2; helix, structural geno | 99.83 | |
| 1xjs_A | 147 | NIFU-like protein; SR17, structure, autostructure, | 99.83 | |
| 1jg8_A | 347 | L-ALLO-threonine aldolase; glycine biosynthesis, p | 99.83 | |
| 1su0_B | 159 | NIFU like protein ISCU; structural genomics, BSGC | 99.83 | |
| 1ibj_A | 464 | CBL, cystathionine beta-lyase; PLP-dependent enzym | 99.83 | |
| 1xjs_A | 147 | NIFU-like protein; SR17, structure, autostructure, | 99.83 | |
| 7aat_A | 401 | Aspartate aminotransferase; transferase(aminotrans | 99.83 | |
| 2ctz_A | 421 | O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac | 99.83 | |
| 3ri6_A | 430 | O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate | 99.83 | |
| 4f4e_A | 420 | Aromatic-amino-acid aminotransferase; ssgcid, stru | 99.83 | |
| 3gbx_A | 420 | Serine hydroxymethyltransferase; structural genomi | 99.83 | |
| 1su0_B | 159 | NIFU like protein ISCU; structural genomics, BSGC | 99.83 | |
| 1c4k_A | 730 | Protein (ornithine decarboxylase); lyase; HET: PLP | 99.82 | |
| 2ay1_A | 394 | Aroat, aromatic amino acid aminotransferase; HET: | 99.82 | |
| 3f6t_A | 533 | Aspartate aminotransferase; YP_194538.1, STRU geno | 99.82 | |
| 3rq1_A | 418 | Aminotransferase class I and II; structural genomi | 99.82 | |
| 1u00_A | 227 | HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A | 99.82 | |
| 2aeu_A | 374 | Hypothetical protein MJ0158; selenocysteine syntha | 99.82 | |
| 2op6_A | 152 | Heat shock 70 kDa protein D; HSP70/peptide-binding | 99.82 | |
| 2q7w_A | 396 | Aspartate aminotransferase; mechanism-based inhibi | 99.82 | |
| 3b1d_A | 392 | Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ | 99.71 | |
| 2eh6_A | 375 | Acoat, acetylornithine aminotransferase; ARGD, str | 99.82 | |
| 1yaa_A | 412 | Aspartate aminotransferase; HET: PLP; 2.05A {Sacch | 99.82 | |
| 1vef_A | 395 | Acetylornithine/acetyl-lysine aminotransferase; PL | 99.81 | |
| 3bwn_A | 391 | AT1G70560, L-tryptophan aminotransferase; auxin sy | 99.81 | |
| 1s0a_A | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.81 | |
| 3ruy_A | 392 | Ornithine aminotransferase; structural genomics, c | 99.81 | |
| 3t18_A | 413 | Aminotransferase class I and II; PSI-biology, MCSG | 99.81 | |
| 3fsl_A | 397 | Aromatic-amino-acid aminotransferase; tyrosine ami | 99.81 | |
| 3f6t_A | 533 | Aspartate aminotransferase; YP_194538.1, STRU geno | 99.81 | |
| 1q5l_A | 135 | Chaperone protein DNAK; HSP70, chaperone, heat sho | 99.81 | |
| 2aeu_A | 374 | Hypothetical protein MJ0158; selenocysteine syntha | 99.81 | |
| 7aat_A | 401 | Aspartate aminotransferase; transferase(aminotrans | 99.81 | |
| 3meb_A | 448 | Aspartate aminotransferase; pyridoxal PHOS transfe | 99.81 | |
| 3bwn_A | 391 | AT1G70560, L-tryptophan aminotransferase; auxin sy | 99.81 | |
| 1ajs_A | 412 | Aspartate aminotransferase; PIG, in the presence o | 99.8 | |
| 2zgy_A | 320 | Plasmid segregation protein PARM; plasmid partitio | 99.8 | |
| 2ord_A | 397 | Acoat, acetylornithine aminotransferase; TM1785, a | 99.8 | |
| 4f4e_A | 420 | Aromatic-amino-acid aminotransferase; ssgcid, stru | 99.8 | |
| 2ay1_A | 394 | Aroat, aromatic amino acid aminotransferase; HET: | 99.8 | |
| 3ri6_A | 430 | O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate | 99.8 | |
| 2vyc_A | 755 | Biodegradative arginine decarboxylase; pyridoxal p | 99.8 | |
| 2vyc_A | 755 | Biodegradative arginine decarboxylase; pyridoxal p | 99.8 | |
| 4adb_A | 406 | Succinylornithine transaminase; transferase, PLP e | 99.8 | |
| 3ecd_A | 425 | Serine hydroxymethyltransferase 2; ssgcid, decode, | 99.8 | |
| 3meb_A | 448 | Aspartate aminotransferase; pyridoxal PHOS transfe | 99.8 | |
| 3h7f_A | 447 | Serine hydroxymethyltransferase 1; cytoplasm, one- | 99.79 | |
| 3ecd_A | 425 | Serine hydroxymethyltransferase 2; ssgcid, decode, | 99.79 | |
| 3h7f_A | 447 | Serine hydroxymethyltransferase 1; cytoplasm, one- | 99.79 | |
| 1ax4_A | 467 | Tryptophanase; tryptophan biosynthesis, tryptophan | 99.79 | |
| 2zgy_A | 320 | Plasmid segregation protein PARM; plasmid partitio | 99.79 | |
| 3b1d_A | 392 | Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ | 99.67 | |
| 3nmy_A | 400 | Xometc, cystathionine gamma-lyase-like protein; Cy | 99.79 | |
| 1ax4_A | 467 | Tryptophanase; tryptophan biosynthesis, tryptophan | 99.79 | |
| 2q7w_A | 396 | Aspartate aminotransferase; mechanism-based inhibi | 99.78 | |
| 1s0a_A | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.78 | |
| 1yaa_A | 412 | Aspartate aminotransferase; HET: PLP; 2.05A {Sacch | 99.78 | |
| 1vef_A | 395 | Acetylornithine/acetyl-lysine aminotransferase; PL | 99.78 | |
| 1u00_A | 227 | HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A | 99.78 | |
| 1sff_A | 426 | 4-aminobutyrate aminotransferase; enzyme complexes | 99.77 | |
| 1ajs_A | 412 | Aspartate aminotransferase; PIG, in the presence o | 99.77 | |
| 2ez2_A | 456 | Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend | 99.77 | |
| 2hox_A | 427 | ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA | 99.77 | |
| 2pb2_A | 420 | Acetylornithine/succinyldiaminopimelate aminotran; | 99.77 | |
| 2ez2_A | 456 | Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend | 99.77 | |
| 3lws_A | 357 | Aromatic amino acid beta-eliminating lyase/threoni | 99.77 | |
| 2eo5_A | 419 | 419AA long hypothetical aminotransferase; PLP enzy | 99.76 | |
| 3jzl_A | 409 | Putative cystathionine beta-lyase involved in ALU | 99.76 | |
| 3i16_A | 427 | Aluminum resistance protein; YP_878183.1, carbon-s | 99.76 | |
| 2zy4_A | 546 | L-aspartate beta-decarboxylase; pyridoxal 5'-phosp | 99.76 | |
| 4adb_A | 406 | Succinylornithine transaminase; transferase, PLP e | 99.76 | |
| 2ord_A | 397 | Acoat, acetylornithine aminotransferase; TM1785, a | 99.76 | |
| 3pj0_A | 359 | LMO0305 protein; structural genomics, joint center | 99.76 | |
| 3nx3_A | 395 | Acoat, acetylornithine aminotransferase; csgid, st | 99.75 | |
| 3nmy_A | 400 | Xometc, cystathionine gamma-lyase-like protein; Cy | 99.75 | |
| 3dxv_A | 439 | Alpha-amino-epsilon-caprolactam racemase; fold-TYP | 99.75 | |
| 1sff_A | 426 | 4-aminobutyrate aminotransferase; enzyme complexes | 99.75 | |
| 3pj0_A | 359 | LMO0305 protein; structural genomics, joint center | 99.75 | |
| 3lws_A | 357 | Aromatic amino acid beta-eliminating lyase/threoni | 99.75 | |
| 2hox_A | 427 | ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA | 99.75 | |
| 1z7d_A | 433 | Ornithine aminotransferase; structural genomics co | 99.75 | |
| 3jzl_A | 409 | Putative cystathionine beta-lyase involved in ALU | 99.74 | |
| 3i16_A | 427 | Aluminum resistance protein; YP_878183.1, carbon-s | 99.74 | |
| 2eo5_A | 419 | 419AA long hypothetical aminotransferase; PLP enzy | 99.74 | |
| 3a8u_X | 449 | Omega-amino acid--pyruvate aminotransferase; large | 99.74 | |
| 4eu1_A | 409 | Mitochondrial aspartate aminotransferase; ssgcid, | 99.74 | |
| 3hvy_A | 427 | Cystathionine beta-lyase family protein, YNBB B.S | 99.74 | |
| 2zy4_A | 546 | L-aspartate beta-decarboxylase; pyridoxal 5'-phosp | 99.73 | |
| 1zod_A | 433 | DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, | 99.73 | |
| 3i4j_A | 430 | Aminotransferase, class III; structural GENOMICS,N | 99.73 | |
| 2pb2_A | 420 | Acetylornithine/succinyldiaminopimelate aminotran; | 99.72 | |
| 3ou5_A | 490 | Serine hydroxymethyltransferase, mitochondrial; st | 99.72 | |
| 2oat_A | 439 | Ornithine aminotransferase; 5-fluoromethylornithin | 99.72 | |
| 2oqx_A | 467 | Tryptophanase; lyase, pyridoxal phosphate, tryptop | 99.72 | |
| 3k7y_A | 405 | Aspartate aminotransferase; aminotrans pyridoxal p | 99.72 | |
| 3hvy_A | 427 | Cystathionine beta-lyase family protein, YNBB B.S | 99.71 | |
| 3nx3_A | 395 | Acoat, acetylornithine aminotransferase; csgid, st | 99.71 | |
| 1z7d_A | 433 | Ornithine aminotransferase; structural genomics co | 99.71 | |
| 3k7y_A | 405 | Aspartate aminotransferase; aminotrans pyridoxal p | 99.71 | |
| 2oqx_A | 467 | Tryptophanase; lyase, pyridoxal phosphate, tryptop | 99.71 | |
| 1zod_A | 433 | DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, | 99.7 | |
| 3a8u_X | 449 | Omega-amino acid--pyruvate aminotransferase; large | 99.7 | |
| 2cjg_A | 449 | L-lysine-epsilon aminotransferase; internal aldimi | 99.7 | |
| 3dxv_A | 439 | Alpha-amino-epsilon-caprolactam racemase; fold-TYP | 99.7 | |
| 3n5m_A | 452 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.69 | |
| 3n75_A | 715 | LDC, lysine decarboxylase, inducible; pyridoxal-5' | 99.69 | |
| 4eu1_A | 409 | Mitochondrial aspartate aminotransferase; ssgcid, | 99.69 | |
| 3i4j_A | 430 | Aminotransferase, class III; structural GENOMICS,N | 99.69 | |
| 2oat_A | 439 | Ornithine aminotransferase; 5-fluoromethylornithin | 99.68 | |
| 3n75_A | 715 | LDC, lysine decarboxylase, inducible; pyridoxal-5' | 99.68 | |
| 3ht4_A | 431 | Aluminum resistance protein; lyase, putative cysta | 99.68 | |
| 2cjg_A | 449 | L-lysine-epsilon aminotransferase; internal aldimi | 99.67 | |
| 4h51_A | 420 | Aspartate aminotransferase; ssgcid, structural gen | 99.67 | |
| 3gju_A | 460 | Putative aminotransferase; pyridoxal phosphate, PL | 99.66 | |
| 3dod_A | 448 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.66 | |
| 3n5m_A | 452 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.66 | |
| 3tfu_A | 457 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.65 | |
| 4a6r_A | 459 | Omega transaminase; transferase, PLP-binding enzym | 99.65 | |
| 4ehu_A | 276 | Activator of 2-hydroxyisocaproyl-COA dehydratase; | 99.65 | |
| 3l44_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha | 99.64 | |
| 3dod_A | 448 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.64 | |
| 4ffc_A | 453 | 4-aminobutyrate aminotransferase (GABT); structura | 99.64 | |
| 3fq8_A | 427 | Glutamate-1-semialdehyde 2,1-aminomutase; drug res | 99.64 | |
| 3hmu_A | 472 | Aminotransferase, class III; structural genomics, | 99.63 | |
| 1k8k_B | 394 | ARP2, actin-like protein 2; beta-propeller, struct | 99.63 |
| >4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-80 Score=840.66 Aligned_cols=500 Identities=41% Similarity=0.628 Sum_probs=471.5
Q ss_pred eEEEEEcCcccEEEEEEECCeeEEEeCCCCCccccEEEEEecCCcEEEcHHHHhhhccCCCCchhhhhhhhCCCCCCCCC
Q psy15216 638 VSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNINT 717 (2602)
Q Consensus 638 ~vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~v~~~~~~~~~vG~~A~~~~~~~p~~~~~~~K~~lg~~~~~~~~ 717 (2602)
.+||||||||||+||++++|.|++++|..|++++||+|+|.++++++||..|+.+...+|.++++++||+||+++++...
T Consensus 3 ~viGIDlGTT~S~Va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~ti~~~KrllG~~~~d~~v 82 (605)
T 4b9q_A 3 KIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGCTLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEV 82 (605)
T ss_dssp CEEEEECCSSEEEEEEEETTEEEECCCTTSCSSEECCEEECTTSCEEESHHHHHTTTTCGGGEECCGGGTTTCBTTSHHH
T ss_pred cEEEEEcCCCcEEEEEEECCEEEEEECCCCCcccceEEEEeCCCcEEecHHHHHHHHhCCCcEehhhHHhhCCCCCCHHH
Confidence 58999999999999999999999999999999999999999888899999999999999999999999999999887422
Q ss_pred ----CCCCeeee-cCCCceEEEEeCceeCHHHHHHHHHHHHHHHHHHhhcCccceEEEEEcCCCCHHHHHHHHHHHHHcC
Q psy15216 718 ----NSFPYDFQ-NKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAG 792 (2602)
Q Consensus 718 ----~~~~~~~~-~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~~~~Aa~~AG 792 (2602)
..+||.+. ..+|.+.+...++.++|+++++++|++|++.|+.++|.++.++|||||+||++.||++|++|+++||
T Consensus 83 ~~~~~~~p~~~~~~~~g~~~~~~~~~~~~p~ei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qr~a~~~Aa~~AG 162 (605)
T 4b9q_A 83 QRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAG 162 (605)
T ss_dssp HHHHTTCSSEEEECTTSBEEEEETTEEECHHHHHHHHHHHHHHHHHHHHTSCCCEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred HHHhhcCCeEEEEcCCCceEEEECCEEECHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHcC
Confidence 37899887 5678888888889999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEechhHHHHHHhhhccCcccceEEEEEeCCceEEEEEEEEEC----CEEEEEEEecCCCCcchHHHHHHHHHHHH
Q psy15216 793 LNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKN----GVFKVLSVGGDSNLGGDDFDYCLFSWIVK 868 (2602)
Q Consensus 793 l~~~~li~EPtAAAl~y~~~~~~~~~~vlV~D~GGGT~Dvsv~~~~~----~~~~v~~~~g~~~lGG~~~D~~l~~~l~~ 868 (2602)
|+++++|+||+|||++|++.....++.++|||+||||||+|++++.+ +.++++++.|+.++||++||++|++|+.+
T Consensus 163 l~v~~li~EP~AAAlaygl~~~~~~~~vlV~DlGGGT~Dvsi~~~~~~~~~~~~evla~~gd~~lGG~d~D~~l~~~l~~ 242 (605)
T 4b9q_A 163 LEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGAFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVE 242 (605)
T ss_dssp CEEEEEEEHHHHHHHHHHTTSCCSSEEEEEEEECSSCEEEEEEEEEESSSCEEEEEEEEEEETTCSHHHHHHHHHHHHHH
T ss_pred CceEEEeCcHHHHHHHhhhhccCCCCEEEEEECCCCeEEEEEEEEecCCCCceEEEEEecCCCCcChHHHHHHHHHHHHH
Confidence 99999999999999999988765678999999999999999999988 89999999999999999999999999999
Q ss_pred HHhhcc-----CCHHHHHHHHHHHHHHHHHcccccceEEEEEe-----cCCceEEEEeCHHHHHHHHHHHHHHHHHHHHH
Q psy15216 869 NAFLKK-----LSYKDVNILMIKSREIKELLSYQSSVKLNVKL-----SDKKIVNITIDMKQFFTITQHLVNRTILLSSK 938 (2602)
Q Consensus 869 ~~~~~~-----~~~~~~~~l~~~~e~~K~~LS~~~~~~~~i~~-----~~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~ 938 (2602)
+|..+. .+++.+.+|+.+||++|+.||...++.+.++. .++.++.++|||++|+++++|+++++..++++
T Consensus 243 ~f~~~~~~~~~~~~~~~~~L~~~aE~~K~~Ls~~~~~~i~~~~~~~~~~g~~~~~~~itr~~~e~l~~~~~~~i~~~v~~ 322 (605)
T 4b9q_A 243 EFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIEPLKV 322 (605)
T ss_dssp HHHHHTCCCGGGCHHHHHHHHHHHHHHHHHTTTCSEEEEEEEEEEECSSSEEEEEEEEEHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHhhhcCCCcccCHHHHHHHHHHHHHHHHhcCcCCCeEEEEeeeccCCCCCeeEEEEEeHHHHHHHHHHHHHHHHHHHHH
Confidence 987544 47889999999999999999999988888873 13367899999999999999999999999999
Q ss_pred HHHHcCCCccccceEEEecCccchHHHHHHHHhhccCcccCcCCcchHhHHHHHHHhHHhcCCCCCCCceeeeccccccc
Q psy15216 939 ALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSL 1018 (2602)
Q Consensus 939 ~l~~a~~~~~~i~~V~LvGG~sr~P~v~~~l~~~f~~~~~~~~~p~~aVa~GAa~~a~~l~~~~~~~~~~~~~dv~~~~~ 1018 (2602)
+|+++++...+|+.|+||||+||+|+|+++|+++||.++..+.||++|||+|||++|+.+++.. +++.+.|++|++|
T Consensus 323 ~L~~a~~~~~~i~~VvLvGG~sriP~v~~~l~~~fg~~~~~~~nPdeaVA~GAai~a~~l~~~~---~~~~l~dv~p~sl 399 (605)
T 4b9q_A 323 ALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLTGDV---KDVLLLDVTPLSL 399 (605)
T ss_dssp HHHHTTCCGGGCSEEEEESGGGGSHHHHHHHHHHHTSCCCSSSCTTTHHHHHHHHHHHHHHTSS---CSEEEECBCSSCE
T ss_pred HHHHcCCCHHHCcEEEEeCCccCchHHHHHHHHHhccCcCCCcChhHHHHHhHHHHHHHhcCCC---CceEEEeeeeeEE
Confidence 9999999999999999999999999999999999999999999999999999999999999864 3789999999999
Q ss_pred eEeeeccEEEEEEecCCCCCCCcEEEEEeccccccceeeeEeecCccccccCceeeeeEecCCCCCCCCccEEEEEEEEC
Q psy15216 1019 GIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVD 1098 (2602)
Q Consensus 1019 gi~~~~~~~~~ii~~~t~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~i~~~~~g~~~i~v~f~~d 1098 (2602)
|+++.+|.|.++|+|||+||+++++.|+|..|+|+.+.|.|||||+..+.+|..||+|.|+|+||.|+|.++|+|+|++|
T Consensus 400 gie~~~g~~~~ii~rnt~iP~~~~~~f~t~~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id 479 (605)
T 4b9q_A 400 GIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDID 479 (605)
T ss_dssp EEEETTTEEEEEECTTCBSSEEEEEEECCSSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCCCSTTCCCEEEEEEEC
T ss_pred EEEEcCCEEEEEEeCCCcCCcceEEEeeeecccCceEEEEEEeccccccccCCEeeEEEEeCCCCCcCCCceEEEEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeEEEEEEEecCCceEEEEEecCCCCCHHHHHhhhhccccCC
Q psy15216 1099 ADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKNGAIFNENSG 1142 (2602)
Q Consensus 1099 ~~g~l~v~a~~~~~g~~~~~~~~~~~~l~~~~i~~~~~~~~~~g 1142 (2602)
.||+|+|+|+++.||++.+++|..+++||++||++|+ ++++-
T Consensus 480 ~~gil~v~a~~~~tg~~~~i~i~~~~~ls~~ei~~~~--~~~~~ 521 (605)
T 4b9q_A 480 ADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMV--RDAEA 521 (605)
T ss_dssp TTSCEEEEEEETTTCCEECCEEESCCSCCHHHHHHHH--HHHHH
T ss_pred CCcEEEEEEEecCCCcEEEEEecCCCCCCHHHHHHHH--HHhhh
Confidence 9999999999999999999999999999999999987 44443
|
| >2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-78 Score=816.32 Aligned_cols=501 Identities=41% Similarity=0.628 Sum_probs=465.3
Q ss_pred eEEEEEcCcccEEEEEEECCeeEEEeCCCCCccccEEEEEecCCcEEEcHHHHhhhccCCCCchhhhhhhhCCCCCCCCC
Q psy15216 638 VSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNINT 717 (2602)
Q Consensus 638 ~vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~v~~~~~~~~~vG~~A~~~~~~~p~~~~~~~K~~lg~~~~~~~~ 717 (2602)
.+||||||||||+||++.+|.+++++|+.|.+++||+|+|.++++++||..|+.+...+|.++++++||+||+++.+...
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~t~~~~Kr~iG~~~~d~~v 82 (605)
T 2kho_A 3 KIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEV 82 (605)
T ss_dssp -CEEEECCSSEEEEEEEETTEEEECCCTTSCSSEECEEEECTTSCEEESHHHHTTTTTCGGGEEECGGGTTTCBSSSTTH
T ss_pred CEEEEEcCCcCEEEEEEECCEEEEEECCCCCcccceEEEEECCCcEEECHHHHHHhhhCCCCEeehhhHhhCCCCCcHHH
Confidence 47999999999999999999999999999999999999998778899999999999999999999999999998876432
Q ss_pred C----CCCeeee-cCCCceEEEEeCceeCHHHHHHHHHHHHHHHHHHhhcCccceEEEEEcCCCCHHHHHHHHHHHHHcC
Q psy15216 718 N----SFPYDFQ-NKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAG 792 (2602)
Q Consensus 718 ~----~~~~~~~-~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~~~~Aa~~AG 792 (2602)
. .+||.+. ..+|.+.+...++.++|+++++++|++|++.|+.+++.++.++|||||+||++.||++|++|++.||
T Consensus 83 ~~~~~~~p~~~~~~~~g~~~i~~~g~~~~~~ei~a~~L~~l~~~ae~~l~~~v~~~VitVPa~f~d~qr~a~~~A~~~AG 162 (605)
T 2kho_A 83 QRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAG 162 (605)
T ss_dssp HHHHHHCSSCEEECTTSBEEEEETTEEECHHHHHHHHHHHHHHHHHHHHCSCCCEEEEEECTTCCHHHHHHHHHHHHTTT
T ss_pred HHHhhcCCeEEEECCCCceEEEECCEEEcHHHHHHHHHHHHHHHHHHHhCCCCcEEEEEECCCCCHHHHHHHHHHHHHcC
Confidence 2 5788876 6678888887778899999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEechhHHHHHHhhhccCcccceEEEEEeCCceEEEEEEEEE----CCEEEEEEEecCCCCcchHHHHHHHHHHHH
Q psy15216 793 LNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFK----NGVFKVLSVGGDSNLGGDDFDYCLFSWIVK 868 (2602)
Q Consensus 793 l~~~~li~EPtAAAl~y~~~~~~~~~~vlV~D~GGGT~Dvsv~~~~----~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~ 868 (2602)
|+++++|+||+|||++|+++....++.+||||+||||||+|++++. ++.++|+++.|+.++||++||++|++|+.+
T Consensus 163 l~v~~li~EP~AAAlay~l~~~~~~~~vlV~DlGGGT~Dvsi~~~~~~~~~g~~~v~a~~gd~~lGG~d~D~~l~~~l~~ 242 (605)
T 2kho_A 163 LEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVE 242 (605)
T ss_dssp CEEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEECSSCEEEEEEEEECTTTSCEEEEEEEEEESSCSGGGTHHHHHHHHHH
T ss_pred CceEEEecCHHHHHHHhhhcccCCCCEEEEEECCCCeEEEEEEEEEecCCCCeEEEEEECCCCCccHHHHHHHHHHHHHH
Confidence 9999999999999999998765456799999999999999999998 789999999999999999999999999999
Q ss_pred HHhhcc-----CCHHHHHHHHHHHHHHHHHcccccceEEEEEe-cC---C-ceEEEEeCHHHHHHHHHHHHHHHHHHHHH
Q psy15216 869 NAFLKK-----LSYKDVNILMIKSREIKELLSYQSSVKLNVKL-SD---K-KIVNITIDMKQFFTITQHLVNRTILLSSK 938 (2602)
Q Consensus 869 ~~~~~~-----~~~~~~~~l~~~~e~~K~~LS~~~~~~~~i~~-~~---~-~~~~~~itr~~fe~l~~~~~~~~~~~i~~ 938 (2602)
+|..+. .+++.+.+|+.+||++|+.||...++.+.++. .+ | .++.++|||++|+++++|+++++..+|++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~L~~~aE~~K~~ls~~~~~~i~l~~~~~~~~G~~~~~~~itr~~fe~l~~~~~~~i~~~i~~ 322 (605)
T 2kho_A 243 EFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIEPLKV 322 (605)
T ss_dssp HHHHHHSCCSTTCHHHHHHHHHHHHHHHHHTTSSSEEEEEEEEEEEETTEEEEEEEEEEHHHHHTTCCSTTGGGTSHHHH
T ss_pred HHHHHhCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEecccccCCCCceEEEEEEeHHHHHHHHHHHHHHHHHHHHH
Confidence 986543 46789999999999999999999888888873 22 3 56788999999999999999999999999
Q ss_pred HHHHcCCCccccceEEEecCccchHHHHHHHHhhccCcccCcCCcchHhHHHHHHHhHHhcCCCCCCCceeeeccccccc
Q psy15216 939 ALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSL 1018 (2602)
Q Consensus 939 ~l~~a~~~~~~i~~V~LvGG~sr~P~v~~~l~~~f~~~~~~~~~p~~aVa~GAa~~a~~l~~~~~~~~~~~~~dv~~~~~ 1018 (2602)
+|+++++.+.+|+.|+||||+||+|+|+++|+++||.++..+.||++|||+|||++|+.+++.. +++.+.|++|++|
T Consensus 323 ~L~~a~~~~~~i~~VvLvGG~srip~v~~~l~~~fg~~~~~~~npd~aVA~GAa~~a~~l~~~~---~~~~l~dv~p~sl 399 (605)
T 2kho_A 323 ALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLTGDV---KDVLLLDVTPLSL 399 (605)
T ss_dssp HHHTTTCCTTTCSEEEEESGGGGSHHHHHHHHHHHSSCCBCSSCTTTHHHHHHHHHHTTTTTSC---CCCCCSBCCCCCE
T ss_pred HHHHcCCChhhCceEEEECCcccChHHHHHHHHhcCCCcCcCCCcchHHHHHHHHHHHHhcCCc---cCceEEeeeeeec
Confidence 9999999999999999999999999999999999999999999999999999999999998752 4688999999999
Q ss_pred eEeeeccEEEEEEecCCCCCCCcEEEEEeccccccceeeeEeecCccccccCceeeeeEecCCCCCCCCccEEEEEEEEC
Q psy15216 1019 GIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVD 1098 (2602)
Q Consensus 1019 gi~~~~~~~~~ii~~~t~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~i~~~~~g~~~i~v~f~~d 1098 (2602)
|+++.++.|.++|+||++||+++++.|+|..|+|+.+.|.|||||+..+.+|..||+|.|+++||.|+|.++|+|+|++|
T Consensus 400 gi~~~~g~~~~li~r~t~iP~~~~~~f~t~~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id 479 (605)
T 2kho_A 400 GIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDID 479 (605)
T ss_dssp EEEETTTEEEEEECTTBCSSEEEEEEECCSSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCSCCTTCSCEEEEEEEC
T ss_pred cccccCCceEEEEecccccCccceEEEEecCCCceEEEEEEEeccCcccccCcEEeEEEecCCCCCCCCCcEEEEEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeEEEEEEEecCCceEEEEEecCCCCCHHHHHhhhhccccCCC
Q psy15216 1099 ADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKNGAIFNENSGI 1143 (2602)
Q Consensus 1099 ~~g~l~v~a~~~~~g~~~~~~~~~~~~l~~~~i~~~~~~~~~~g~ 1143 (2602)
.||+|+|++.++.||++.+++|+.+++||++||++++ ++++-+
T Consensus 480 ~~gil~v~a~~~~tg~~~~i~i~~~~~ls~~~i~~~~--~~~~~~ 522 (605)
T 2kho_A 480 ADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMV--RDAEAN 522 (605)
T ss_dssp TTSCEEEEEEETTTCCEEEEEECTTSSCCHHHHHHHH--HHHHHS
T ss_pred CCCceeEEEEEcCCCceeecccccccCCCHHHHHHHH--HHHHHH
Confidence 9999999999999999999999999889999999987 554444
|
| >1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-77 Score=795.97 Aligned_cols=521 Identities=37% Similarity=0.587 Sum_probs=472.0
Q ss_pred eEEEEEcCcccEEEEEEECCeeEEEeCCCCCccccEEEEEecCCcEEEcHHHHhhhccCCCCchhhhhhhhCCCCCCCC-
Q psy15216 638 VSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNIN- 716 (2602)
Q Consensus 638 ~vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~v~~~~~~~~~vG~~A~~~~~~~p~~~~~~~K~~lg~~~~~~~- 716 (2602)
.+||||||||||+||++.+|.+++++|+.|++++||+|+|.++ +++||..|+++...+|.++++++||+||+++++..
T Consensus 5 ~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~-~~~vG~~A~~~~~~~p~~ti~~~KrllG~~~~d~~v 83 (554)
T 1yuw_A 5 PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFDDAVV 83 (554)
T ss_dssp CCEEEEECSSEEEEEEECSSSEEECCCTTSCSEEECCEEECSS-CEEETHHHHTTTTTCGGGEECCGGGTTTCCSSCSHH
T ss_pred CEEEEEeCcccEEEEEEECCEEEEEECCCCCeecceEEEEcCC-cEEEcHHHHHhhhhChhhehHhhHHhcCCCCCcHHH
Confidence 4799999999999999999999999999999999999999765 68999999999999999999999999999987743
Q ss_pred ---CCCCCeeeecCCCceEEEEe----CceeCHHHHHHHHHHHHHHHHHHhhcCccceEEEEEcCCCCHHHHHHHHHHHH
Q psy15216 717 ---TNSFPYDFQNKFGMLHIKTI----SGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAK 789 (2602)
Q Consensus 717 ---~~~~~~~~~~~~~~~~~~~~----~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~~~~Aa~ 789 (2602)
...+||.+...+|.+.+... .+.++|+++++++|++|++.|+.++|.++.++|||||++|++.||++|++|++
T Consensus 84 ~~~~~~~p~~v~~~~g~~~~~v~~~~~~~~~sp~ei~a~~L~~lk~~ae~~lg~~v~~~VitVPa~f~~~qr~a~~~A~~ 163 (554)
T 1yuw_A 84 QSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGT 163 (554)
T ss_dssp HHHHTTCSSEEEEETTEEEEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHSSCCCEEEEEECTTCCHHHHHHHHHHHH
T ss_pred HHHhhcCCeEEEecCCceEEEEEECCCceEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 23689998866777666542 35799999999999999999999999999999999999999999999999999
Q ss_pred HcCCceEEEechhHHHHHHhhhccCc-ccceEEEEEeCCceEEEEEEEEECCEEEEEEEecCCCCcchHHHHHHHHHHHH
Q psy15216 790 LAGLNVLRLLNEPTSAAIAYKLDKNI-FEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVK 868 (2602)
Q Consensus 790 ~AGl~~~~li~EPtAAAl~y~~~~~~-~~~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~ 868 (2602)
.||++++++++||+|||++|++.... .++.++|||+||||||+|++++.++.++|+++.|+.++||++||++|++|+.+
T Consensus 164 ~AGl~~~~li~EP~AAAlay~~~~~~~~~~~vlV~D~GgGT~Dvsv~~~~~g~~~v~a~~g~~~lGG~d~d~~l~~~l~~ 243 (554)
T 1yuw_A 164 IAGLNVLRIINEPTAAAIAYGLDKKVGAERNVLIFDLGGGTFDVSILTIAAGIFEVKSTAGDTHLGGEDFDNRMVNHFIA 243 (554)
T ss_dssp TTTCEEEEEEEHHHHHHHHTTCSTTCSSCEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHH
T ss_pred HcCCCeEEEeCcHHHHHHHHHhhccCCCCcEEEEEEcCCCeEEEEEEEEcCCcEEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999987642 45789999999999999999999999999999999999999999999999999
Q ss_pred HHhhcc-----CCHHHHHHHHHHHHHHHHHcccccceEEEEE-ecCCceEEEEeCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15216 869 NAFLKK-----LSYKDVNILMIKSREIKELLSYQSSVKLNVK-LSDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMD 942 (2602)
Q Consensus 869 ~~~~~~-----~~~~~~~~l~~~~e~~K~~LS~~~~~~~~i~-~~~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~ 942 (2602)
+|..+. .+++.+.+|+.+||++|+.||...++.+.++ +.+|.++..+|||++|+++++|+++++..+++++|++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~l~~~aE~~K~~ls~~~~~~i~i~~~~~g~~~~~~ltr~~~e~l~~~~~~~i~~~i~~~L~~ 323 (554)
T 1yuw_A 244 EFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRD 323 (554)
T ss_dssp HHHHHTSCCTTSCHHHHHHHHHHHHHHHHHHTTSSEEEEEETTCSSSCCEEEEEEHHHHHHHTHHHHHHTTHHHHHHHHH
T ss_pred HHHHHhCCCcccCHHHHHHHHHHHHHHhhhcccCceEEEEEeeccCCceEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 886543 4678899999999999999999988888877 4677889999999999999999999999999999999
Q ss_pred cCCCccccceEEEecCccchHHHHHHHHhhcc-CcccCcCCcchHhHHHHHHHhHHhcCCC-CCCCceeeeccccccceE
Q psy15216 943 ANLTIKDINNVILVGGSTRMKHIHEGVSNFFK-TTLLTSIDPDKAVVFGAAIQANFLSGNR-GIDDNFLLLDVIPLSLGI 1020 (2602)
Q Consensus 943 a~~~~~~i~~V~LvGG~sr~P~v~~~l~~~f~-~~~~~~~~p~~aVa~GAa~~a~~l~~~~-~~~~~~~~~dv~~~~~gi 1020 (2602)
+++.+.+|+.|+||||+||+|+|+++|++.|+ .++..+.||++|||+|||++|+.+++.. ...+++.+.|++|++||+
T Consensus 324 a~~~~~~i~~VvLvGG~srip~v~~~l~~~f~~~~v~~~~np~~aVA~Gaa~~a~~l~~~~~~~~~~~~~~dv~p~slgi 403 (554)
T 1yuw_A 324 AKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGI 403 (554)
T ss_dssp TTCCGGGCCEEEEESGGGGCHHHHHHHHHHTTTCCCBCCSCTTTHHHHHHHHHHHHTTSCCCCCTTSSCCCCBCSSCEEE
T ss_pred cCCChhhCcEEEEECCcccChHHHHHHHHHcCCCccccCCCchhHHHHHHHHHHHHhcCCccccccceEEEEeeeeEEEE
Confidence 99999999999999999999999999999995 7888899999999999999999998742 113568899999999999
Q ss_pred eeeccEEEEEEecCCCCCCCcEEEEEeccccccceeeeEeecCccccccCceeeeeEecCCCCCCCCccEEEEEEEECCC
Q psy15216 1021 ETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDAD 1100 (2602)
Q Consensus 1021 ~~~~~~~~~ii~~~t~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~i~~~~~g~~~i~v~f~~d~~ 1100 (2602)
++.++.|.++|+||++||+++++.|++..|+|+.+.|.|||||+..+.+|..||+|.|+++||.|+|.++|+|+|++|.|
T Consensus 404 ~~~~g~~~~li~r~t~iP~~~~~~f~~~~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~ 483 (554)
T 1yuw_A 404 ETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDAN 483 (554)
T ss_dssp EETTTEEEEEECTTCBSSEEEEEEEEESSTTCSEEEEEEEESSSSBGGGSEEEEEEEEECCCCCSTTCCCEEEEEEECTT
T ss_pred EecCceEEEEEECCCccCceeEEEeeeccCCCceEEEEEEecCccccccCcEEEEEEEeCCCCCcccccEEEEEEEEccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEEEecCCceEEEEEecCC-CCCHHHHHhhhhccccCCCchhHHHHhcccchhhhcc
Q psy15216 1101 GLLSIFAYEKISGKKKFITIKPFY-NMNLDEIKNGAIFNENSGISLCDALLKNSIFIEHACE 1161 (2602)
Q Consensus 1101 g~l~v~a~~~~~g~~~~~~~~~~~-~l~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~c~ 1161 (2602)
|+|+|++.++.||++.+++|..+. +||++||++++ ++++-+..-+..........+.++
T Consensus 484 gil~v~a~~~~tg~~~~~~i~~~~~~ls~~~i~~~~--~~~~~~~~~d~~~~~~~~~~n~~e 543 (554)
T 1yuw_A 484 GILNVSAVDKSTGKENKITITNDKGRLSKEDIERMV--QEAEKYKAEDEKQRDKVSSKNSLE 543 (554)
T ss_dssp CCEEEEEEETTTCCEEEEEECCCSSCSCHHHHHHHH--HHHHHTTTHHHHHTTSSCSCEECS
T ss_pred ceEEEEEEeccCCCceeEEEecCCCCCCHHHHHHHH--HHHHHhhhccHHHHHHHHHHHHHH
Confidence 999999999999999999999884 59999999986 655555555555444444333333
|
| >4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-76 Score=799.44 Aligned_cols=494 Identities=42% Similarity=0.636 Sum_probs=462.3
Q ss_pred ceEEEEEcCcccEEEEEEECCeEEEEeCCCCCccccEEEEEecCCcEEecHHHHhhhccCCCCchhhhhhhcCCCCCCCC
Q psy15216 2033 CVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNIN 2112 (2602)
Q Consensus 2033 ~~vvGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~~~~~~vG~~A~~~~~~~p~~~~~~~K~~lg~~~~~~~ 2112 (2602)
..+||||||||||+||++.+|+|+++.|..|++++||+|+|.++++++||..|+.+...+|.++++++||+||+++.++.
T Consensus 2 ~~viGIDlGTT~S~Va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~ti~~~KrllG~~~~d~~ 81 (605)
T 4b9q_A 2 GKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGCTLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEE 81 (605)
T ss_dssp CCEEEEECCSSEEEEEEEETTEEEECCCTTSCSSEECCEEECTTSCEEESHHHHHTTTTCGGGEECCGGGTTTCBTTSHH
T ss_pred CcEEEEEcCCCcEEEEEEECCEEEEEECCCCCcccceEEEEeCCCcEEecHHHHHHHHhCCCcEehhhHHhhCCCCCCHH
Confidence 35899999999999999999999999999999999999999888899999999999999999999999999999987742
Q ss_pred ----CCCCCeeee-cCCCceEEEecCceeCHHHHHHHHHHHHHHHHHHhhccccceEEEeeCCCCCHHHHHHHHHHHHHc
Q psy15216 2113 ----TNSFPYDFQ-NKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLA 2187 (2602)
Q Consensus 2113 ----~~~~~~~~~-~~~g~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~l~~Aa~~A 2187 (2602)
.+.+||++. ..+|...+...+..++|+++++++|++|++.++.+++.++.++|||||++|++.||++|++|++.|
T Consensus 82 v~~~~~~~p~~~~~~~~g~~~~~~~~~~~~p~ei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qr~a~~~Aa~~A 161 (605)
T 4b9q_A 82 VQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIA 161 (605)
T ss_dssp HHHHHTTCSSEEEECTTSBEEEEETTEEECHHHHHHHHHHHHHHHHHHHHTSCCCEEEEEECTTCCHHHHHHHHHHHHHT
T ss_pred HHHHhhcCCeEEEEcCCCceEEEECCEEECHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHc
Confidence 357888875 466777777788899999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEeechhHHHHHHhhhccCCCCceEEEEEeCCceEEEEEEEEeC----CEEEEEEEecCCCCchhHHHHHHHHHHH
Q psy15216 2188 GLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKN----GVFKVLSVGGDSNLGGDDFDYCLFSWIV 2263 (2602)
Q Consensus 2188 Gl~~~~li~EP~AAAl~y~~~~~~~~~~vlV~D~GGGT~Dvsv~~~~~----~~~~v~~~~g~~~lGG~~~D~~l~~~l~ 2263 (2602)
||+++++|+||+|||++|++.....++.++|||+||||||+|++++.+ +.++++++.|+.++||.+||++|++|+.
T Consensus 162 Gl~v~~li~EP~AAAlaygl~~~~~~~~vlV~DlGGGT~Dvsi~~~~~~~~~~~~evla~~gd~~lGG~d~D~~l~~~l~ 241 (605)
T 4b9q_A 162 GLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGAFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLV 241 (605)
T ss_dssp TCEEEEEEEHHHHHHHHHHTTSCCSSEEEEEEEECSSCEEEEEEEEEESSSCEEEEEEEEEEETTCSHHHHHHHHHHHHH
T ss_pred CCceEEEeCcHHHHHHHhhhhccCCCCEEEEEECCCCeEEEEEEEEecCCCCceEEEEEecCCCCcChHHHHHHHHHHHH
Confidence 999999999999999999988766678999999999999999999988 8999999999999999999999999999
Q ss_pred HHHhhhcC------ChhHHHHHHHHHHHHHHHhcccceEEEEEEe-----cCCceEEEEcCHHHHHHHHHHHHHHHHHHH
Q psy15216 2264 KNAFLKKL------SYKDVNILMIKSREIKELLSYQSSVKLNVKL-----SDKKIVNITIDMKQFFTITQHLVNRTILLS 2332 (2602)
Q Consensus 2264 ~~~~~~~~------~~~~~~~l~~~~e~~K~~ls~~~~~~~~i~~-----~~~~~~~~~itr~~fe~l~~~~~~~~~~~i 2332 (2602)
+++ .++. ....+.+|+.+||++|+.||...++.+.++. .++.++.++|||++|+++++|+++++..++
T Consensus 242 ~~f-~~~~~~~~~~~~~~~~~L~~~aE~~K~~Ls~~~~~~i~~~~~~~~~~g~~~~~~~itr~~~e~l~~~~~~~i~~~v 320 (605)
T 4b9q_A 242 EEF-KKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIEPL 320 (605)
T ss_dssp HHH-HHHTCCCGGGCHHHHHHHHHHHHHHHHHTTTCSEEEEEEEEEEECSSSEEEEEEEEEHHHHHHHHHHHHHHTTHHH
T ss_pred HHH-hhhcCCCcccCHHHHHHHHHHHHHHHHhcCcCCCeEEEEeeeccCCCCCeeEEEEEeHHHHHHHHHHHHHHHHHHH
Confidence 874 3322 3456788999999999999999988888773 234678999999999999999999999999
Q ss_pred HHHHHHcCCCccccceEEEEeCccchHHHHHHHHhhcCCcccCCCCccchhhhHHHHHhHHhcCCCCCCCceeeeccccc
Q psy15216 2333 SKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPL 2412 (2602)
Q Consensus 2333 ~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~aVa~GAa~~a~~~~~~~~~~~~~~~~d~~~~ 2412 (2602)
+++|+++++...+|+.|+||||+||+|+|+++|++.||.++..+.||++|||+|||++|+.+++.. +++.+.|++|+
T Consensus 321 ~~~L~~a~~~~~~i~~VvLvGG~sriP~v~~~l~~~fg~~~~~~~nPdeaVA~GAai~a~~l~~~~---~~~~l~dv~p~ 397 (605)
T 4b9q_A 321 KVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLTGDV---KDVLLLDVTPL 397 (605)
T ss_dssp HHHHHHTTCCGGGCSEEEEESGGGGSHHHHHHHHHHHTSCCCSSSCTTTHHHHHHHHHHHHHHTSS---CSEEEECBCSS
T ss_pred HHHHHHcCCCHHHCcEEEEeCCccCchHHHHHHHHHhccCcCCCcChhHHHHHhHHHHHHHhcCCC---CceEEEeeeee
Confidence 999999999999999999999999999999999999999999999999999999999999998763 45899999999
Q ss_pred cceEEeeccEEEEEEecCCcCCCCcEEEEEeecccccceeEEEeecCcccccCCceeEEEEeeCCCCCCCCccEEEEEEE
Q psy15216 2413 SLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQ 2492 (2602)
Q Consensus 2413 ~~gi~~~~~~~~~ii~k~t~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~f~ 2492 (2602)
+||+++.+|.|.+||+||++||+++++.|++..|||+.+.|.|||||+..+.+|..||+|.|+++||.|+|.++|+|+|+
T Consensus 398 slgie~~~g~~~~ii~rnt~iP~~~~~~f~t~~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~ 477 (605)
T 4b9q_A 398 SLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFD 477 (605)
T ss_dssp CEEEEETTTEEEEEECTTCBSSEEEEEEECCSSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCCCSTTCCCEEEEEE
T ss_pred EEEEEEcCCEEEEEEeCCCcCCcceEEEeeeecccCceEEEEEEeccccccccCCEeeEEEEeCCCCCcCCCceEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCccEEEEEEeecCCcEEEEEEecCCCCChHHHhcc
Q psy15216 2493 VDADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKNG 2530 (2602)
Q Consensus 2493 id~~g~l~V~a~~~~tg~~~~~~i~~~~~l~~~ei~~~ 2530 (2602)
+|.||+|+|+|.++.||++.+++|...++||++||++.
T Consensus 478 id~~gil~v~a~~~~tg~~~~i~i~~~~~ls~~ei~~~ 515 (605)
T 4b9q_A 478 IDADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKM 515 (605)
T ss_dssp ECTTSCEEEEEEETTTCCEECCEEESCCSCCHHHHHHH
T ss_pred EcCCcEEEEEEEecCCCcEEEEEecCCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999963
|
| >3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-75 Score=794.01 Aligned_cols=499 Identities=23% Similarity=0.337 Sum_probs=452.8
Q ss_pred EEEEEcCcccEEEEEEECCeeEEEeCCCCCccccEEEEEecCCcEEEcHHHHhhhccCCCCchhhhhhhhCCCCCCCCC-
Q psy15216 639 SIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNINT- 717 (2602)
Q Consensus 639 vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~v~~~~~~~~~vG~~A~~~~~~~p~~~~~~~K~~lg~~~~~~~~- 717 (2602)
+||||||||||+||++.+|++++|.|..|++.+||+|+|.++ +++||..|+.+...+|.++++++||+||++++++..
T Consensus 4 ~iGIDlGTtns~va~~~~g~~~ii~n~~g~r~tPS~Vaf~~~-~~~vG~~A~~~~~~~p~~ti~~~KrllG~~~~d~~v~ 82 (675)
T 3d2f_A 4 PFGLDLGNNNSVLAVARNRGIDIVVNEVSNRSTPSVVGFGPK-NRYLGETGKNKQTSNIKNTVANLKRIIGLDYHHPDFE 82 (675)
T ss_dssp CEEEECCSSEEEEEEEETTEEEEECCTTSCSSEECCEEECSS-SEEETHHHHHHHTTCGGGEECCHHHHTTCBTTCTTHH
T ss_pred EEEEEcCCCcEEEEEEECCeeEEEECCCCCcccceEEEECCC-cEEecHHHHHhhhhChHhHHHHHHHHhCCCCCcHHHH
Confidence 799999999999999999999999999999999999999765 689999999999999999999999999999877532
Q ss_pred ---CCCCeeee-cCCCceEEEEe--C--ceeCHHHHHHHHHHHHHHHHHHhhcCccceEEEEEcCCCCHHHHHHHHHHHH
Q psy15216 718 ---NSFPYDFQ-NKFGMLHIKTI--S--GIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAK 789 (2602)
Q Consensus 718 ---~~~~~~~~-~~~~~~~~~~~--~--~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~~~~Aa~ 789 (2602)
..+||.+. ..+|.+.+... + +.++|+++++++|++|++.|+.++|.++.++|||||+||++.||++|++|++
T Consensus 83 ~~~~~~p~~v~~~~~g~~~~~~~~~g~~~~~speei~a~~L~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~ 162 (675)
T 3d2f_A 83 QESKHFTSKLVELDDKKTGAEVRFAGEKHVFSATQLAAMFIDKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAAR 162 (675)
T ss_dssp HHHTTCCSEEEECTTSBEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHCSCCCEEEEEECTTCCHHHHHHHHHHHH
T ss_pred HHHhhCCeeEEEcCCCceEEEEEeCCCCceEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHH
Confidence 37899887 34677766543 2 5799999999999999999999999999999999999999999999999999
Q ss_pred HcCCceEEEechhHHHHHHhhhccC------cccceEEEEEeCCceEEEEEEEEECCEEEEEEEecCCCCcchHHHHHHH
Q psy15216 790 LAGLNVLRLLNEPTSAAIAYKLDKN------IFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLF 863 (2602)
Q Consensus 790 ~AGl~~~~li~EPtAAAl~y~~~~~------~~~~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~ 863 (2602)
.|||+++++|+||+|||++|++.+. ..+.++||||+||||||+|++++.++.++|+++.|+.++||++||++|+
T Consensus 163 ~AGl~~~~li~EP~AAAlaygl~~~~~~~~~~~~~~vlV~DlGGGT~Dvsv~~~~~g~~~V~a~~gd~~lGG~d~D~~l~ 242 (675)
T 3d2f_A 163 IAGLNPVRIVNDVTAAGVSYGIFKTDLPEGEEKPRIVAFVDIGHSSYTCSIMAFKKGQLKVLGTACDKHFGGRDFDLAIT 242 (675)
T ss_dssp HTTCEEEEEEEHHHHHHHHHHHHCSCCCCSSSCCEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHH
T ss_pred HcCCceEEEEcchHHHHHHHhhhccccccccCCCcEEEEEEcCCCcEEEEEEEecCCeEEEEEEcCCCCccHHHHHHHHH
Confidence 9999999999999999999988653 2457899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcc-----CCHHHHHHHHHHHHHHHHHcccccceEEEEE-ecCCceEEEEeCHHHHHHHHHHHHHHHHHHHH
Q psy15216 864 SWIVKNAFLKK-----LSYKDVNILMIKSREIKELLSYQSSVKLNVK-LSDKKIVNITIDMKQFFTITQHLVNRTILLSS 937 (2602)
Q Consensus 864 ~~l~~~~~~~~-----~~~~~~~~l~~~~e~~K~~LS~~~~~~~~i~-~~~~~~~~~~itr~~fe~l~~~~~~~~~~~i~ 937 (2602)
+|+.++|..+. .+++.+.+|+.+||++|+.||...++.+.++ +.++.++.++|||++|+++++|+++++..+++
T Consensus 243 ~~l~~~f~~~~~~~~~~~~~a~~rL~~~aE~aK~~Ls~~~~~~i~i~~~~~g~~~~~~itr~~fe~l~~~l~~~i~~~i~ 322 (675)
T 3d2f_A 243 EHFADEFKTKYKIDIRENPKAYNRILTAAEKLKKVLSANTNAPFSVESVMNDVDVSSQLSREELEELVKPLLERVTEPVT 322 (675)
T ss_dssp HHHHHHHHHHTSCCGGGCHHHHHHHHHHHHHHHHHHHHCSEEEEEETTSSSSCCEEEEEEHHHHHHHTHHHHTTTTHHHH
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHhcCcCCceEEEEeeeccCceEEEEEeHHHHHHHHHHHHHHHHHHHH
Confidence 99999886543 4688999999999999999999888888876 45678899999999999999999999999999
Q ss_pred HHHHHcCCCccccceEEEecCccchHHHHHHHHhhccCcccCcCCcchHhHHHHHHHhHHhcCCCCCCCceeeecccccc
Q psy15216 938 KALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLS 1017 (2602)
Q Consensus 938 ~~l~~a~~~~~~i~~V~LvGG~sr~P~v~~~l~~~f~~~~~~~~~p~~aVa~GAa~~a~~l~~~~~~~~~~~~~dv~~~~ 1017 (2602)
++|+++++++.+|+.|+||||+||+|+|+++|++.||.++..+.||++|||+|||++|+.+++.++ ..++.+.|++|++
T Consensus 323 ~~L~~a~l~~~~I~~VvLvGGssriP~v~~~l~~~fg~~~~~~~nPdeaVA~GAa~~a~~ls~~~~-v~~~~l~Dv~p~s 401 (675)
T 3d2f_A 323 KALAQAKLSAEEVDFVEIIGGTTRIPTLKQSISEAFGKPLSTTLNQDEAIAKGAAFICAIHSPTLR-VRPFKFEDIHPYS 401 (675)
T ss_dssp HHHHHHTCCGGGCCEEEEESGGGGSHHHHHHHHHHHTSCEECCSCTTTHHHHHHHHHHHHTCSSCC-CCCCEEEEEECSC
T ss_pred HHHHHhCCChhhCcEEEEECCCccChHHHHHHHHhcCCCccccCCcchHHHHHHHHHHHHhCCCCc-ccceEEEeeeecc
Confidence 999999999999999999999999999999999999999989999999999999999999998765 3568899999999
Q ss_pred ceEeeecc----EEEEEEecCCCCCCCcEEEEEeccccccceeeeEeecCccccc-cCceeeeeEecCCCCCCCCcc-EE
Q psy15216 1018 LGIETIGG----LVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVK-NCQVLANFELRDIPPMPAGRA-RI 1091 (2602)
Q Consensus 1018 ~gi~~~~~----~~~~ii~~~t~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~-~~~~lg~~~l~~i~~~~~g~~-~i 1091 (2602)
||+++.++ .+.+||+||++||++++++|++..++| +.+. |+|++..+. +|..||+|.|+||||.|+|.+ +|
T Consensus 402 lgi~~~~~~~~~~~~~li~rnt~iP~~k~~~f~~~~~~~--~~~~-~~ge~~~~~~~n~~lg~f~l~gi~~~~~g~~~~i 478 (675)
T 3d2f_A 402 VSYSWDKQVEDEDHMEVFPAGSSFPSTKLITLNRTGDFS--MAAS-YTDITQLPPNTPEQIANWEITGVQLPEGQDSVPV 478 (675)
T ss_dssp EEEEECCTTCSCSEEEEECTTEEESEEEEEEEEESSCEE--EEEE-ESCGGGSCTTCCSEEEEEEEECCCCCSSCSCEEE
T ss_pred eEeeecCCCCCcceEEEEcCCCCCCcccceeeeecCCce--EEEE-EcCCcccccccCceeeEEEecCcCCCCCCCcceE
Confidence 99999877 499999999999999999999876664 3333 789999887 999999999999999999985 89
Q ss_pred EEEEEECCCeeEEEEEE----------EecCCceEEEEEecCC-CCCHHHHHhhhhccccCCCc
Q psy15216 1092 KVTYQVDADGLLSIFAY----------EKISGKKKFITIKPFY-NMNLDEIKNGAIFNENSGIS 1144 (2602)
Q Consensus 1092 ~v~f~~d~~g~l~v~a~----------~~~~g~~~~~~~~~~~-~l~~~~i~~~~~~~~~~g~~ 1144 (2602)
+|+|++|.||+|+|++. ++.||++.+++|+... +||++||++++ ++++-+.
T Consensus 479 ~v~f~id~~Gil~V~a~~~~~~~~~~~~~~t~~~~~i~i~~~~~~ls~~ei~~~~--~~~~~~~ 540 (675)
T 3d2f_A 479 KLKLRCDPSGLHTIEEAYTIEDIEAGSDTKTVKKDDLTIVAHTFGLDAKKLNELI--EKENEML 540 (675)
T ss_dssp EEEEEECTTSCEEEEEEEEECC------CCCCEEEECEEEEECSSCCHHHHHHHH--HHHHHHH
T ss_pred EEEEEEcCCCcEEEEEEEEeecccccccccCcceeeEEEecCCCCCCHHHHHHHH--HHHHHHH
Confidence 99999999999999995 7899999999999875 79999999987 5544433
|
| >2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-74 Score=778.12 Aligned_cols=493 Identities=42% Similarity=0.642 Sum_probs=454.6
Q ss_pred eEEEEEcCcccEEEEEEECCeEEEEeCCCCCccccEEEEEecCCcEEecHHHHhhhccCCCCchhhhhhhcCCCCCCCCC
Q psy15216 2034 VSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNINT 2113 (2602)
Q Consensus 2034 ~vvGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~~~~~~vG~~A~~~~~~~p~~~~~~~K~~lg~~~~~~~~ 2113 (2602)
.+||||||||||+||++.+|.+++++|++|++++||+|+|.++++++||+.|+.+...+|.++++++||+||+.+.+...
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~t~~~~Kr~iG~~~~d~~v 82 (605)
T 2kho_A 3 KIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEV 82 (605)
T ss_dssp -CEEEECCSSEEEEEEEETTEEEECCCTTSCSSEECEEEECTTSCEEESHHHHTTTTTCGGGEEECGGGTTTCBSSSTTH
T ss_pred CEEEEEcCCcCEEEEEEECCEEEEEECCCCCcccceEEEEECCCcEEECHHHHHHhhhCCCCEeehhhHhhCCCCCcHHH
Confidence 37999999999999999999999999999999999999998888899999999999999999999999999998765432
Q ss_pred ----CCCCeeee-cCCCceEEEecCceeCHHHHHHHHHHHHHHHHHHhhccccceEEEeeCCCCCHHHHHHHHHHHHHcC
Q psy15216 2114 ----NSFPYDFQ-NKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAG 2188 (2602)
Q Consensus 2114 ----~~~~~~~~-~~~g~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~l~~Aa~~AG 2188 (2602)
+.+||++. ..+|...+...+..++|+++++++|++|++.|+.+++.++.++|||||++|++.||+++++|++.||
T Consensus 83 ~~~~~~~p~~~~~~~~g~~~i~~~g~~~~~~ei~a~~L~~l~~~ae~~l~~~v~~~VitVPa~f~d~qr~a~~~A~~~AG 162 (605)
T 2kho_A 83 QRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAG 162 (605)
T ss_dssp HHHHHHCSSCEEECTTSBEEEEETTEEECHHHHHHHHHHHHHHHHHHHHCSCCCEEEEEECTTCCHHHHHHHHHHHHTTT
T ss_pred HHHhhcCCeEEEECCCCceEEEECCEEEcHHHHHHHHHHHHHHHHHHHhCCCCcEEEEEECCCCCHHHHHHHHHHHHHcC
Confidence 24678764 5667777777777899999999999999999999999999999999999999999999999999999
Q ss_pred CceeEeechhHHHHHHhhhccCCCCceEEEEEeCCceEEEEEEEEe----CCEEEEEEEecCCCCchhHHHHHHHHHHHH
Q psy15216 2189 LNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFK----NGVFKVLSVGGDSNLGGDDFDYCLFSWIVK 2264 (2602)
Q Consensus 2189 l~~~~li~EP~AAAl~y~~~~~~~~~~vlV~D~GGGT~Dvsv~~~~----~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~ 2264 (2602)
++++++|+||+|||++|++.....++.+||||+||||||+|++++. ++.++|+++.|+.++||.+||++|++|+.+
T Consensus 163 l~v~~li~EP~AAAlay~l~~~~~~~~vlV~DlGGGT~Dvsi~~~~~~~~~g~~~v~a~~gd~~lGG~d~D~~l~~~l~~ 242 (605)
T 2kho_A 163 LEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVE 242 (605)
T ss_dssp CEEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEECSSCEEEEEEEEECTTTSCEEEEEEEEEESSCSGGGTHHHHHHHHHH
T ss_pred CceEEEecCHHHHHHHhhhcccCCCCEEEEEECCCCeEEEEEEEEEecCCCCeEEEEEECCCCCccHHHHHHHHHHHHHH
Confidence 9999999999999999998765456789999999999999999998 789999999999999999999999999998
Q ss_pred HHhhhcC------ChhHHHHHHHHHHHHHHHhcccceEEEEEEe-cC---C-ceEEEEcCHHHHHHHHHHHHHHHHHHHH
Q psy15216 2265 NAFLKKL------SYKDVNILMIKSREIKELLSYQSSVKLNVKL-SD---K-KIVNITIDMKQFFTITQHLVNRTILLSS 2333 (2602)
Q Consensus 2265 ~~~~~~~------~~~~~~~l~~~~e~~K~~ls~~~~~~~~i~~-~~---~-~~~~~~itr~~fe~l~~~~~~~~~~~i~ 2333 (2602)
++ .+++ ....+.+|+.+||++|+.||...++.+.++. .+ | .++.++|||++|+++++|+++++..+++
T Consensus 243 ~~-~~~~~~~~~~~~~~~~~L~~~aE~~K~~ls~~~~~~i~l~~~~~~~~G~~~~~~~itr~~fe~l~~~~~~~i~~~i~ 321 (605)
T 2kho_A 243 EF-KKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIEPLK 321 (605)
T ss_dssp HH-HHHHSCCSTTCHHHHHHHHHHHHHHHHHTTSSSEEEEEEEEEEEETTEEEEEEEEEEHHHHHTTCCSTTGGGTSHHH
T ss_pred HH-HHHhCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEecccccCCCCceEEEEEEeHHHHHHHHHHHHHHHHHHHH
Confidence 74 3321 2356788999999999999999888888773 22 2 5677899999999999999999999999
Q ss_pred HHHHHcCCCccccceEEEEeCccchHHHHHHHHhhcCCcccCCCCccchhhhHHHHHhHHhcCCCCCCCceeeecccccc
Q psy15216 2334 KALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLS 2413 (2602)
Q Consensus 2334 ~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~aVa~GAa~~a~~~~~~~~~~~~~~~~d~~~~~ 2413 (2602)
++|+++++.+.+|+.|+||||+||+|+|+++|++.||.++..+.||++|||+|||++|+.+++.. .++.+.|++|++
T Consensus 322 ~~L~~a~~~~~~i~~VvLvGG~srip~v~~~l~~~fg~~~~~~~npd~aVA~GAa~~a~~l~~~~---~~~~l~dv~p~s 398 (605)
T 2kho_A 322 VALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLTGDV---KDVLLLDVTPLS 398 (605)
T ss_dssp HHHHTTTCCTTTCSEEEEESGGGGSHHHHHHHHHHHSSCCBCSSCTTTHHHHHHHHHHTTTTTSC---CCCCCSBCCCCC
T ss_pred HHHHHcCCChhhCceEEEECCcccChHHHHHHHHhcCCCcCcCCCcchHHHHHHHHHHHHhcCCc---cCceEEeeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999988752 358899999999
Q ss_pred ceEEeeccEEEEEEecCCcCCCCcEEEEEeecccccceeEEEeecCcccccCCceeEEEEeeCCCCCCCCccEEEEEEEE
Q psy15216 2414 LGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQV 2493 (2602)
Q Consensus 2414 ~gi~~~~~~~~~ii~k~t~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~f~i 2493 (2602)
||+++.+|.|.++|+||++||+++++.|++..|+|+.+.|.||||++..+.+|..||+|.|+++||.|+|.++|+|+|++
T Consensus 399 lgi~~~~g~~~~li~r~t~iP~~~~~~f~t~~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~i 478 (605)
T 2kho_A 399 LGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDI 478 (605)
T ss_dssp EEEEETTTEEEEEECTTBCSSEEEEEEECCSSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCSCCTTCSCEEEEEEE
T ss_pred ccccccCCceEEEEecccccCccceEEEEecCCCceEEEEEEEeccCcccccCcEEeEEEecCCCCCCCCCcEEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccEEEEEEeecCCcEEEEEEecCCCCChHHHhcc
Q psy15216 2494 DADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKNG 2530 (2602)
Q Consensus 2494 d~~g~l~V~a~~~~tg~~~~~~i~~~~~l~~~ei~~~ 2530 (2602)
|.||+|+|++.++.||++.+++|+..++||++||++.
T Consensus 479 d~~gil~v~a~~~~tg~~~~i~i~~~~~ls~~~i~~~ 515 (605)
T 2kho_A 479 DADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKM 515 (605)
T ss_dssp CTTSCEEEEEEETTTCCEEEEEECTTSSCCHHHHHHH
T ss_pred cCCCceeEEEEEcCCCceeecccccccCCCHHHHHHH
Confidence 9999999999999999999999999999999999964
|
| >2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-73 Score=754.88 Aligned_cols=479 Identities=41% Similarity=0.609 Sum_probs=443.9
Q ss_pred eEEEEEcCcccEEEEEEECCeeEEEeCCCCCccccEEEEEecCCcEEEcHHHHhhhccCCCCchhhhhhhhCCCCCCCCC
Q psy15216 638 VSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNINT 717 (2602)
Q Consensus 638 ~vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~v~~~~~~~~~vG~~A~~~~~~~p~~~~~~~K~~lg~~~~~~~~ 717 (2602)
.+||||||||||+||++.+|.|++++|+.|++++||+|+| .+++++||+.|+.+...+| ++++++||+||+++
T Consensus 3 ~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~-~~~~~~vG~~A~~~~~~~p-~~~~~~Kr~lg~p~----- 75 (509)
T 2v7y_A 3 KIIGIDLGTTNSCVAVLEGGEVKVIPNPEGNRTTPSVVAF-KNGERLVGEVAKRQAITNP-NTIISIKRHMGTDY----- 75 (509)
T ss_dssp CEEEEEECSSEEEEEEEETTEEEECCCTTSCSSEECEEEE-SSSSEEESHHHHTTTTTCS-SEEECGGGTTTSCC-----
T ss_pred CEEEEEcCCceEEEEEEECCEEEEEECCCCCcccceEEEE-CCCcEEECHHHHHhHHhCC-CcHHHHHHhcCCCc-----
Confidence 4799999999999999999999999999999999999999 5667999999999999999 99999999999843
Q ss_pred CCCCeeeecCCCceEEEEeCceeCHHHHHHHHHHHHHHHHHHhhcCccceEEEEEcCCCCHHHHHHHHHHHHHcCCceEE
Q psy15216 718 NSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLR 797 (2602)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~~~~Aa~~AGl~~~~ 797 (2602)
.+ ...+..++|+++++++|++|++.++++++.++.++|||||++|++.||++|++|++.||+++++
T Consensus 76 -----~~---------~~~g~~~~~~ei~a~~L~~l~~~ae~~l~~~~~~~VitvPa~~~~~qr~a~~~a~~~AGl~~~~ 141 (509)
T 2v7y_A 76 -----KV---------EIEGKQYTPQEISAIILQYLKSYAEDYLGEPVTRAVITVPAYFNDAQRQATKDAGRIAGLEVER 141 (509)
T ss_dssp -----CE---------EETTEEECHHHHHHHHHHHHHHHHHHHHTSCCCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEE
T ss_pred -----EE---------EECCEEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHcCCCeEE
Confidence 21 1234468999999999999999999999999999999999999999999999999999999999
Q ss_pred EechhHHHHHHhhhccCcccceEEEEEeCCceEEEEEEEEECCEEEEEEEecCCCCcchHHHHHHHHHHHHHHhhcc---
Q psy15216 798 LLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKK--- 874 (2602)
Q Consensus 798 li~EPtAAAl~y~~~~~~~~~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~~--- 874 (2602)
+++||+|||++|++... .+..+||||+||||||+|++++.++.++++++.|+.++||.+||+.|++|+.++|..+.
T Consensus 142 li~Ep~AAAlay~~~~~-~~~~vlV~D~GgGT~Dvsv~~~~~g~~~v~a~~g~~~lGG~d~d~~l~~~l~~~~~~~~~~~ 220 (509)
T 2v7y_A 142 IINEPTAAALAYGLDKE-EDQTILVYDLGGGTFDVSILELGDGVFEVKATAGDNHLGGDDFDQVIIDYLVNQFKQEHGID 220 (509)
T ss_dssp EEEHHHHHHHHTTGGGS-CSEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred EecCHHHHHHHHhhccC-CCCEEEEEECCCCeEEEEEEEEcCCeEEEEEecCCCCcCHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999998764 56799999999999999999999999999999999999999999999999999886543
Q ss_pred --CCHHHHHHHHHHHHHHHHHcccccceEEEEEe-cC---C-ceEEEEeCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Q psy15216 875 --LSYKDVNILMIKSREIKELLSYQSSVKLNVKL-SD---K-KIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTI 947 (2602)
Q Consensus 875 --~~~~~~~~l~~~~e~~K~~LS~~~~~~~~i~~-~~---~-~~~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~a~~~~ 947 (2602)
.+++.+.+|+.+||++|+.||...+..+.++. .+ | .++.++|||++|+++++|+++++.++++++|+++++.+
T Consensus 221 ~~~~~~~~~~l~~~aE~~K~~ls~~~~~~i~l~~~~~~~~G~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~L~~a~~~~ 300 (509)
T 2v7y_A 221 LSKDKMALQRLKDAAEKAKKELSGVTQTQISLPFISANENGPLHLEMTLTRAKFEELSAHLVERTMGPVRQALQDAGLTP 300 (509)
T ss_dssp GGGCHHHHHHHHHHHHHHHHHTTTCSEEEEEEEEEEEETTEEEEEEEEEEHHHHHHHTHHHHHTTHHHHHHHHHHHTCCG
T ss_pred cccCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCCCCCeeEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHcCCCh
Confidence 45788999999999999999998888888773 22 2 46788999999999999999999999999999999999
Q ss_pred cccceEEEecCccchHHHHHHHHhhccCcccCcCCcchHhHHHHHHHhHHhcCCCCCCCceeeeccccccceEeeeccEE
Q psy15216 948 KDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGLV 1027 (2602)
Q Consensus 948 ~~i~~V~LvGG~sr~P~v~~~l~~~f~~~~~~~~~p~~aVa~GAa~~a~~l~~~~~~~~~~~~~dv~~~~~gi~~~~~~~ 1027 (2602)
.+|+.|+||||+|++|+|+++|++.|+.++..+.||++|||+|||++|+.+++.. +++.+.|++|++||+++.++.|
T Consensus 301 ~~i~~VvLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~aVa~Gaa~~a~~l~~~~---~~~~~~dv~p~slgi~~~~~~~ 377 (509)
T 2v7y_A 301 ADIDKVILVGGSTRIPAVQEAIKRELGKEPHKGVNPDEVVAIGAAIQGGVIAGEV---KDVVLLDVTPLSLGIETMGGVF 377 (509)
T ss_dssp GGCSEEEEESGGGGCHHHHHHHHHHHSSCCBCCSCTTTHHHHHHHHHHHHHHTCC---CCCCCCCBCSSEEEEEETTTEE
T ss_pred hHCcEEEEECCcccChHHHHHHHHHhCCCcCcCCCchhhhHhhHHHHHHHhcCCc---cCceEEEeeccccceeecCCce
Confidence 9999999999999999999999999998889999999999999999999998762 3688999999999999999999
Q ss_pred EEEEecCCCCCCCcEEEEEeccccccceeeeEeecCccccccCceeeeeEecCCCCCCCCccEEEEEEEECCCeeEEEEE
Q psy15216 1028 EKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFA 1107 (2602)
Q Consensus 1028 ~~ii~~~t~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~i~~~~~g~~~i~v~f~~d~~g~l~v~a 1107 (2602)
.++|+||++||+++++.|++..|+|+.+.|.|||||+..+.+|..||+|.|+++||.|+|.++|+|+|++|.||+|+|++
T Consensus 378 ~~li~~~~~iP~~~~~~f~~~~d~q~~~~i~v~~ge~~~~~~~~~lg~~~l~~i~~~~~g~~~i~v~f~id~~gil~v~a 457 (509)
T 2v7y_A 378 TKLIERNTTIPTSKSQVFTTAADNQTTVDIHVLQGERPMAADNKSLGRFQLTGIPPAPRGVPQIEVTFDIDANGIVHVRA 457 (509)
T ss_dssp EEEECTTCBSSEEEEEEECCSSTTCCEEEEEEEEESSSBGGGSEEEEEEEEECCCCCCTTCSCEEEEEEECTTSCEEEEE
T ss_pred EEEEeCCCcCCcceEEEEEeeccCcEEEEEEEEecCccccccCcEEEEEEEeCCCCCCCcccEEEEEEEEcCCceEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCceEEEEEecCCCCCHHHHHhhhhccccCCC
Q psy15216 1108 YEKISGKKKFITIKPFYNMNLDEIKNGAIFNENSGI 1143 (2602)
Q Consensus 1108 ~~~~~g~~~~~~~~~~~~l~~~~i~~~~~~~~~~g~ 1143 (2602)
+++.||++.+++|+.+.+||++||++++ ++++-+
T Consensus 458 ~~~~~g~~~~~~i~~~~~l~~~~i~~~~--~~~~~~ 491 (509)
T 2v7y_A 458 KDLGTNKEQSITIKSSSGLSEEEIQRMI--KEAEEN 491 (509)
T ss_dssp EETTTCCEEEEEECSSCSCCSHHHHHHH--HHHHHS
T ss_pred EEcCCCcEEEEEEEecCCCCHHHHHHHH--HHHHHh
Confidence 9999999999999999889999999986 444443
|
| >1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-73 Score=759.19 Aligned_cols=494 Identities=39% Similarity=0.627 Sum_probs=452.3
Q ss_pred eEEEEEcCcccEEEEEEECCeEEEEeCCCCCccccEEEEEecCCcEEecHHHHhhhccCCCCchhhhhhhcCCCCCCCC-
Q psy15216 2034 VSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNIN- 2112 (2602)
Q Consensus 2034 ~vvGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~~~~~~vG~~A~~~~~~~p~~~~~~~K~~lg~~~~~~~- 2112 (2602)
.+||||||||||+||++.+|.++++.|++|++++||+|+|.+ ++++||..|+.+...+|.++++++||+||+++.++.
T Consensus 5 ~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~-~~~~vG~~A~~~~~~~p~~ti~~~KrllG~~~~d~~v 83 (554)
T 1yuw_A 5 PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTD-TERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFDDAVV 83 (554)
T ss_dssp CCEEEEECSSEEEEEEECSSSEEECCCTTSCSEEECCEEECS-SCEEETHHHHTTTTTCGGGEECCGGGTTTCCSSCSHH
T ss_pred CEEEEEeCcccEEEEEEECCEEEEEECCCCCeecceEEEEcC-CcEEEcHHHHHhhhhChhhehHhhHHhcCCCCCcHHH
Confidence 479999999999999999999999999999999999999975 478999999999999999999999999999887643
Q ss_pred ---CCCCCeeeecCCCceEEEe----cCceeCHHHHHHHHHHHHHHHHHHhhccccceEEEeeCCCCCHHHHHHHHHHHH
Q psy15216 2113 ---TNSFPYDFQNKFGMLHIKT----ISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAK 2185 (2602)
Q Consensus 2113 ---~~~~~~~~~~~~g~~~~~~----~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~l~~Aa~ 2185 (2602)
.+.+||.+...+|...+.. ....++|+++++++|++|++.++.+++.++.++|||||++|++.||+++++|++
T Consensus 84 ~~~~~~~p~~v~~~~g~~~~~v~~~~~~~~~sp~ei~a~~L~~lk~~ae~~lg~~v~~~VitVPa~f~~~qr~a~~~A~~ 163 (554)
T 1yuw_A 84 QSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGT 163 (554)
T ss_dssp HHHHTTCSSEEEEETTEEEEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHSSCCCEEEEEECTTCCHHHHHHHHHHHH
T ss_pred HHHhhcCCeEEEecCCceEEEEEECCCceEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 3568888875566655443 235799999999999999999999999999999999999999999999999999
Q ss_pred HcCCceeEeechhHHHHHHhhhccCC-CCceEEEEEeCCceEEEEEEEEeCCEEEEEEEecCCCCchhHHHHHHHHHHHH
Q psy15216 2186 LAGLNVLRLLNEPTSAAIAYKLDKNI-FEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVK 2264 (2602)
Q Consensus 2186 ~AGl~~~~li~EP~AAAl~y~~~~~~-~~~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~ 2264 (2602)
.||++++++++||+|||++|++.... .++.++|||+||||||+|++++.++.++++++.|+.++||.+||++|++|+.+
T Consensus 164 ~AGl~~~~li~EP~AAAlay~~~~~~~~~~~vlV~D~GgGT~Dvsv~~~~~g~~~v~a~~g~~~lGG~d~d~~l~~~l~~ 243 (554)
T 1yuw_A 164 IAGLNVLRIINEPTAAAIAYGLDKKVGAERNVLIFDLGGGTFDVSILTIAAGIFEVKSTAGDTHLGGEDFDNRMVNHFIA 243 (554)
T ss_dssp TTTCEEEEEEEHHHHHHHHTTCSTTCSSCEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHH
T ss_pred HcCCCeEEEeCcHHHHHHHHHhhccCCCCcEEEEEEcCCCeEEEEEEEEcCCcEEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999886542 45789999999999999999999999999999999999999999999999998
Q ss_pred HHhhhcC------ChhHHHHHHHHHHHHHHHhcccceEEEEEE-ecCCceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15216 2265 NAFLKKL------SYKDVNILMIKSREIKELLSYQSSVKLNVK-LSDKKIVNITIDMKQFFTITQHLVNRTILLSSKALM 2337 (2602)
Q Consensus 2265 ~~~~~~~------~~~~~~~l~~~~e~~K~~ls~~~~~~~~i~-~~~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~l~ 2337 (2602)
+ |.+++ ....+.+|+.+||++|+.||...++.+.++ +.++.++..+|||++|+++++|+++++.++++++|+
T Consensus 244 ~-~~~~~~~~~~~~~~~~~~l~~~aE~~K~~ls~~~~~~i~i~~~~~g~~~~~~ltr~~~e~l~~~~~~~i~~~i~~~L~ 322 (554)
T 1yuw_A 244 E-FKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALR 322 (554)
T ss_dssp H-HHHHTSCCTTSCHHHHHHHHHHHHHHHHHHTTSSEEEEEETTCSSSCCEEEEEEHHHHHHHTHHHHHHTTHHHHHHHH
T ss_pred H-HHHHhCCCcccCHHHHHHHHHHHHHHhhhcccCceEEEEEeeccCCceEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6 33322 235677899999999999999988888876 456778899999999999999999999999999999
Q ss_pred HcCCCccccceEEEEeCccchHHHHHHHHhhcC-CcccCCCCccchhhhHHHHHhHHhcCC--CCCCCceeeeccccccc
Q psy15216 2338 DANLTIKDINNVILVGGSTRMKHIHEGVSNFFK-TTLLTSIDPDKAVVFGAAIQANFLSGN--RGIDDNFLLLDVIPLSL 2414 (2602)
Q Consensus 2338 ~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~-~~~~~~~~p~~aVa~GAa~~a~~~~~~--~~~~~~~~~~d~~~~~~ 2414 (2602)
++++.+.+|+.|+||||+|++|+|+++|++.|+ .++..+.||++|||+|||++|+.+++. ... +++.+.|++|++|
T Consensus 323 ~a~~~~~~i~~VvLvGG~srip~v~~~l~~~f~~~~v~~~~np~~aVA~Gaa~~a~~l~~~~~~~~-~~~~~~dv~p~sl 401 (554)
T 1yuw_A 323 DAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSENV-QDLLLLDVTPLSL 401 (554)
T ss_dssp HTTCCGGGCCEEEEESGGGGCHHHHHHHHHHTTTCCCBCCSCTTTHHHHHHHHHHHHTTSCCCCCT-TSSCCCCBCSSCE
T ss_pred HcCCChhhCcEEEEECCcccChHHHHHHHHHcCCCccccCCCchhHHHHHHHHHHHHhcCCccccc-cceEEEEeeeeEE
Confidence 999999999999999999999999999999996 788889999999999999999999874 222 4588999999999
Q ss_pred eEEeeccEEEEEEecCCcCCCCcEEEEEeecccccceeEEEeecCcccccCCceeEEEEeeCCCCCCCCccEEEEEEEEc
Q psy15216 2415 GIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVD 2494 (2602)
Q Consensus 2415 gi~~~~~~~~~ii~k~t~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~f~id 2494 (2602)
|+++.+|.|.++|+||++||+++++.|++..|+|+.+.|.||||++..+.+|..||+|.|+++||.|+|.++|+|+|++|
T Consensus 402 gi~~~~g~~~~li~r~t~iP~~~~~~f~~~~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id 481 (554)
T 1yuw_A 402 GIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDID 481 (554)
T ss_dssp EEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCSEEEEEEEESSSSBGGGSEEEEEEEEECCCCCSTTCCCEEEEEEEC
T ss_pred EEEecCceEEEEEECCCccCceeEEEeeeccCCCceEEEEEEecCccccccCcEEEEEEEeCCCCCcccccEEEEEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEEEeecCCcEEEEEEecC-CCCChHHHhcc
Q psy15216 2495 ADGLLSIFAYEKISGKKKFITIKPF-YNMNLDEIKNG 2530 (2602)
Q Consensus 2495 ~~g~l~V~a~~~~tg~~~~~~i~~~-~~l~~~ei~~~ 2530 (2602)
.||+|+|++.++.||++.+++|... ++||++||++.
T Consensus 482 ~~gil~v~a~~~~tg~~~~~~i~~~~~~ls~~~i~~~ 518 (554)
T 1yuw_A 482 ANGILNVSAVDKSTGKENKITITNDKGRLSKEDIERM 518 (554)
T ss_dssp TTCCEEEEEEETTTCCEEEEEECCCSSCSCHHHHHHH
T ss_pred cCceEEEEEEeccCCCceeEEEecCCCCCCHHHHHHH
Confidence 9999999999999999999999987 67999999963
|
| >3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-71 Score=755.59 Aligned_cols=491 Identities=23% Similarity=0.365 Sum_probs=441.8
Q ss_pred eEEEEEcCcccEEEEEEECCeEEEEeCCCCCccccEEEEEecCCcEEecHHHHhhhccCCCCchhhhhhhcCCCCCCCC-
Q psy15216 2034 VSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNIN- 2112 (2602)
Q Consensus 2034 ~vvGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~~~~~~vG~~A~~~~~~~p~~~~~~~K~~lg~~~~~~~- 2112 (2602)
.+||||||||||+||++.+|+++++.|+.|++.+||+|+|.+ ++++||+.|+.+...+|.++++++||+||+++.++.
T Consensus 3 ~~iGIDlGTtns~va~~~~g~~~ii~n~~g~r~tPS~Vaf~~-~~~~vG~~A~~~~~~~p~~ti~~~KrllG~~~~d~~v 81 (675)
T 3d2f_A 3 TPFGLDLGNNNSVLAVARNRGIDIVVNEVSNRSTPSVVGFGP-KNRYLGETGKNKQTSNIKNTVANLKRIIGLDYHHPDF 81 (675)
T ss_dssp CCEEEECCSSEEEEEEEETTEEEEECCTTSCSSEECCEEECS-SSEEETHHHHHHHTTCGGGEECCHHHHTTCBTTCTTH
T ss_pred cEEEEEcCCCcEEEEEEECCeeEEEECCCCCcccceEEEECC-CcEEecHHHHHhhhhChHhHHHHHHHHhCCCCCcHHH
Confidence 379999999999999999999999999999999999999975 568999999999999999999999999999987753
Q ss_pred ---CCCCCeeeec-CCCceEEEec--C--ceeCHHHHHHHHHHHHHHHHHHhhccccceEEEeeCCCCCHHHHHHHHHHH
Q psy15216 2113 ---TNSFPYDFQN-KFGMLHIKTI--S--GIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAA 2184 (2602)
Q Consensus 2113 ---~~~~~~~~~~-~~g~~~~~~~--~--~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~l~~Aa 2184 (2602)
.+.+||.+.. .+|.+.+... + ..++|+++++++|++|++.|+.+++.++.++|||||++|++.||+++++|+
T Consensus 82 ~~~~~~~p~~v~~~~~g~~~~~~~~~g~~~~~speei~a~~L~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa 161 (675)
T 3d2f_A 82 EQESKHFTSKLVELDDKKTGAEVRFAGEKHVFSATQLAAMFIDKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAA 161 (675)
T ss_dssp HHHHTTCCSEEEECTTSBEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHCSCCCEEEEEECTTCCHHHHHHHHHHH
T ss_pred HHHHhhCCeeEEEcCCCceEEEEEeCCCCceEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHH
Confidence 3578888754 4566655432 2 479999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceeEeechhHHHHHHhhhccC------CCCceEEEEEeCCceEEEEEEEEeCCEEEEEEEecCCCCchhHHHHHH
Q psy15216 2185 KLAGLNVLRLLNEPTSAAIAYKLDKN------IFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCL 2258 (2602)
Q Consensus 2185 ~~AGl~~~~li~EP~AAAl~y~~~~~------~~~~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l 2258 (2602)
+.||++++++|+||+|||++|++... ..++++||||+||||||+|++++.++.++|+++.|+.++||++||++|
T Consensus 162 ~~AGl~~~~li~EP~AAAlaygl~~~~~~~~~~~~~~vlV~DlGGGT~Dvsv~~~~~g~~~V~a~~gd~~lGG~d~D~~l 241 (675)
T 3d2f_A 162 RIAGLNPVRIVNDVTAAGVSYGIFKTDLPEGEEKPRIVAFVDIGHSSYTCSIMAFKKGQLKVLGTACDKHFGGRDFDLAI 241 (675)
T ss_dssp HHTTCEEEEEEEHHHHHHHHHHHHCSCCCCSSSCCEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHH
T ss_pred HHcCCceEEEEcchHHHHHHHhhhccccccccCCCcEEEEEEcCCCcEEEEEEEecCCeEEEEEEcCCCCccHHHHHHHH
Confidence 99999999999999999999988652 345689999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcC------ChhHHHHHHHHHHHHHHHhcccceEEEEEE-ecCCceEEEEcCHHHHHHHHHHHHHHHHHH
Q psy15216 2259 FSWIVKNAFLKKL------SYKDVNILMIKSREIKELLSYQSSVKLNVK-LSDKKIVNITIDMKQFFTITQHLVNRTILL 2331 (2602)
Q Consensus 2259 ~~~l~~~~~~~~~------~~~~~~~l~~~~e~~K~~ls~~~~~~~~i~-~~~~~~~~~~itr~~fe~l~~~~~~~~~~~ 2331 (2602)
++|+.++ |.+++ ..+.+.+|+.+||++|+.||...++.++++ +.++.++.++|||++|+++++|+++++..+
T Consensus 242 ~~~l~~~-f~~~~~~~~~~~~~a~~rL~~~aE~aK~~Ls~~~~~~i~i~~~~~g~~~~~~itr~~fe~l~~~l~~~i~~~ 320 (675)
T 3d2f_A 242 TEHFADE-FKTKYKIDIRENPKAYNRILTAAEKLKKVLSANTNAPFSVESVMNDVDVSSQLSREELEELVKPLLERVTEP 320 (675)
T ss_dssp HHHHHHH-HHHHTSCCGGGCHHHHHHHHHHHHHHHHHHHHCSEEEEEETTSSSSCCEEEEEEHHHHHHHTHHHHTTTTHH
T ss_pred HHHHHHH-HHHHhCCCCCCCHHHHHHHHHHHHHHHHhcCcCCceEEEEeeeccCceEEEEEeHHHHHHHHHHHHHHHHHH
Confidence 9999986 43332 235678899999999999999888888776 455678899999999999999999999999
Q ss_pred HHHHHHHcCCCccccceEEEEeCccchHHHHHHHHhhcCCcccCCCCccchhhhHHHHHhHHhcCCCCCCCceeeecccc
Q psy15216 2332 SSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIP 2411 (2602)
Q Consensus 2332 i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~aVa~GAa~~a~~~~~~~~~~~~~~~~d~~~ 2411 (2602)
++++|+++++.+.+|+.|+||||+||+|+|+++|++.||.++..+.||++|||+|||++|+.+++.++++ ++.+.|++|
T Consensus 321 i~~~L~~a~l~~~~I~~VvLvGGssriP~v~~~l~~~fg~~~~~~~nPdeaVA~GAa~~a~~ls~~~~v~-~~~l~Dv~p 399 (675)
T 3d2f_A 321 VTKALAQAKLSAEEVDFVEIIGGTTRIPTLKQSISEAFGKPLSTTLNQDEAIAKGAAFICAIHSPTLRVR-PFKFEDIHP 399 (675)
T ss_dssp HHHHHHHHTCCGGGCCEEEEESGGGGSHHHHHHHHHHHTSCEECCSCTTTHHHHHHHHHHHHTCSSCCCC-CCEEEEEEC
T ss_pred HHHHHHHhCCChhhCcEEEEECCCccChHHHHHHHHhcCCCccccCCcchHHHHHHHHHHHHhCCCCccc-ceEEEeeee
Confidence 9999999999999999999999999999999999999999999999999999999999999999876554 488999999
Q ss_pred ccceEEeecc----EEEEEEecCCcCCCCcEEEEEeecccccceeEEEeecCccccc-CCceeEEEEeeCCCCCCCCcc-
Q psy15216 2412 LSLGIETIGG----LVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVK-NCQVLANFELRDIPPMPAGRA- 2485 (2602)
Q Consensus 2412 ~~~gi~~~~~----~~~~ii~k~t~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~-~~~~lg~~~l~~~~~~~~g~~- 2485 (2602)
++||+++.++ .+.+||+||++||++++..|++..++| +.+. |+|++..+. +|..||+|.|+++||.|.|.+
T Consensus 400 ~slgi~~~~~~~~~~~~~li~rnt~iP~~k~~~f~~~~~~~--~~~~-~~ge~~~~~~~n~~lg~f~l~gi~~~~~g~~~ 476 (675)
T 3d2f_A 400 YSVSYSWDKQVEDEDHMEVFPAGSSFPSTKLITLNRTGDFS--MAAS-YTDITQLPPNTPEQIANWEITGVQLPEGQDSV 476 (675)
T ss_dssp SCEEEEECCTTCSCSEEEEECTTEEESEEEEEEEEESSCEE--EEEE-ESCGGGSCTTCCSEEEEEEEECCCCCSSCSCE
T ss_pred cceEeeecCCCCCcceEEEEcCCCCCCcccceeeeecCCce--EEEE-EcCCcccccccCceeeEEEecCcCCCCCCCcc
Confidence 9999999876 499999999999999999999876654 3333 789998887 999999999999999999974
Q ss_pred EEEEEEEEcCCccEEEEEE----------eecCCcEEEEEEecC-CCCChHHHhcc
Q psy15216 2486 RIKVTYQVDADGLLSIFAY----------EKISGKKKFITIKPF-YNMNLDEIKNG 2530 (2602)
Q Consensus 2486 ~i~v~f~id~~g~l~V~a~----------~~~tg~~~~~~i~~~-~~l~~~ei~~~ 2530 (2602)
+|+|+|++|.||+|+|++. ++.||++..++|... ++||++||++.
T Consensus 477 ~i~v~f~id~~Gil~V~a~~~~~~~~~~~~~~t~~~~~i~i~~~~~~ls~~ei~~~ 532 (675)
T 3d2f_A 477 PVKLKLRCDPSGLHTIEEAYTIEDIEAGSDTKTVKKDDLTIVAHTFGLDAKKLNEL 532 (675)
T ss_dssp EEEEEEEECTTSCEEEEEEEEECC------CCCCEEEECEEEEECSSCCHHHHHHH
T ss_pred eEEEEEEEcCCCcEEEEEEEEeecccccccccCcceeeEEEecCCCCCCHHHHHHH
Confidence 8999999999999999995 799999999999986 58999999964
|
| >2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-69 Score=723.73 Aligned_cols=471 Identities=42% Similarity=0.624 Sum_probs=434.9
Q ss_pred eEEEEEcCcccEEEEEEECCeEEEEeCCCCCccccEEEEEecCCcEEecHHHHhhhccCCCCchhhhhhhcCCCCCCCCC
Q psy15216 2034 VSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNINT 2113 (2602)
Q Consensus 2034 ~vvGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~~~~~~vG~~A~~~~~~~p~~~~~~~K~~lg~~~~~~~~ 2113 (2602)
.+||||||||||+||++.+|.|++++|++|++.+||+|+| .+++++||+.|+.+...+| ++++++||+||+++.
T Consensus 3 ~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~-~~~~~~vG~~A~~~~~~~p-~~~~~~Kr~lg~p~~---- 76 (509)
T 2v7y_A 3 KIIGIDLGTTNSCVAVLEGGEVKVIPNPEGNRTTPSVVAF-KNGERLVGEVAKRQAITNP-NTIISIKRHMGTDYK---- 76 (509)
T ss_dssp CEEEEEECSSEEEEEEEETTEEEECCCTTSCSSEECEEEE-SSSSEEESHHHHTTTTTCS-SEEECGGGTTTSCCC----
T ss_pred CEEEEEcCCceEEEEEEECCEEEEEECCCCCcccceEEEE-CCCcEEECHHHHHhHHhCC-CcHHHHHHhcCCCcE----
Confidence 4899999999999999999999999999999999999999 5778999999999999999 999999999998432
Q ss_pred CCCCeeeecCCCceEEEecCceeCHHHHHHHHHHHHHHHHHHhhccccceEEEeeCCCCCHHHHHHHHHHHHHcCCceeE
Q psy15216 2114 NSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLR 2193 (2602)
Q Consensus 2114 ~~~~~~~~~~~g~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~l~~Aa~~AGl~~~~ 2193 (2602)
+ ...+..++|+++++++|++|++.++.+++.++.++|||||++|++.||++|++|++.||+++++
T Consensus 77 ------~---------~~~g~~~~~~ei~a~~L~~l~~~ae~~l~~~~~~~VitvPa~~~~~qr~a~~~a~~~AGl~~~~ 141 (509)
T 2v7y_A 77 ------V---------EIEGKQYTPQEISAIILQYLKSYAEDYLGEPVTRAVITVPAYFNDAQRQATKDAGRIAGLEVER 141 (509)
T ss_dssp ------E---------EETTEEECHHHHHHHHHHHHHHHHHHHHTSCCCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEE
T ss_pred ------E---------EECCEEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHcCCCeEE
Confidence 1 1123468999999999999999999999999999999999999999999999999999999999
Q ss_pred eechhHHHHHHhhhccCCCCceEEEEEeCCceEEEEEEEEeCCEEEEEEEecCCCCchhHHHHHHHHHHHHHHhhhcC--
Q psy15216 2194 LLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKL-- 2271 (2602)
Q Consensus 2194 li~EP~AAAl~y~~~~~~~~~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~~~-- 2271 (2602)
+++||+|||++|++... .+++++|||+||||||+|++++.++.++++++.|+.++||.+||+.|++|+.+++ .+++
T Consensus 142 li~Ep~AAAlay~~~~~-~~~~vlV~D~GgGT~Dvsv~~~~~g~~~v~a~~g~~~lGG~d~d~~l~~~l~~~~-~~~~~~ 219 (509)
T 2v7y_A 142 IINEPTAAALAYGLDKE-EDQTILVYDLGGGTFDVSILELGDGVFEVKATAGDNHLGGDDFDQVIIDYLVNQF-KQEHGI 219 (509)
T ss_dssp EEEHHHHHHHHTTGGGS-CSEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHHHH-HHHHSC
T ss_pred EecCHHHHHHHHhhccC-CCCEEEEEECCCCeEEEEEEEEcCCeEEEEEecCCCCcCHHHHHHHHHHHHHHHH-HHHhCC
Confidence 99999999999988754 4678999999999999999999999999999999999999999999999999874 3321
Q ss_pred ----ChhHHHHHHHHHHHHHHHhcccceEEEEEEe-cC---C-ceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q psy15216 2272 ----SYKDVNILMIKSREIKELLSYQSSVKLNVKL-SD---K-KIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLT 2342 (2602)
Q Consensus 2272 ----~~~~~~~l~~~~e~~K~~ls~~~~~~~~i~~-~~---~-~~~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~~~~~ 2342 (2602)
......+|+.+||++|+.||...+..+.++. .+ | .++.++|||++|+++++|+++++.+++.++|+++++.
T Consensus 220 ~~~~~~~~~~~l~~~aE~~K~~ls~~~~~~i~l~~~~~~~~G~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~L~~a~~~ 299 (509)
T 2v7y_A 220 DLSKDKMALQRLKDAAEKAKKELSGVTQTQISLPFISANENGPLHLEMTLTRAKFEELSAHLVERTMGPVRQALQDAGLT 299 (509)
T ss_dssp CGGGCHHHHHHHHHHHHHHHHHTTTCSEEEEEEEEEEEETTEEEEEEEEEEHHHHHHHTHHHHHTTHHHHHHHHHHHTCC
T ss_pred CcccCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCCCCCeeEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 2345678999999999999998888888773 21 2 4577899999999999999999999999999999999
Q ss_pred ccccceEEEEeCccchHHHHHHHHhhcCCcccCCCCccchhhhHHHHHhHHhcCCCCCCCceeeeccccccceEEeeccE
Q psy15216 2343 IKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLSGNRGIDDNFLLLDVIPLSLGIETIGGL 2422 (2602)
Q Consensus 2343 ~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~aVa~GAa~~a~~~~~~~~~~~~~~~~d~~~~~~gi~~~~~~ 2422 (2602)
+.+|+.|+||||+|++|+|+++|++.|+.++..+.||++|||+|||++|+.+++.. +++.+.|++|++||+++.++.
T Consensus 300 ~~~i~~VvLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~aVa~Gaa~~a~~l~~~~---~~~~~~dv~p~slgi~~~~~~ 376 (509)
T 2v7y_A 300 PADIDKVILVGGSTRIPAVQEAIKRELGKEPHKGVNPDEVVAIGAAIQGGVIAGEV---KDVVLLDVTPLSLGIETMGGV 376 (509)
T ss_dssp GGGCSEEEEESGGGGCHHHHHHHHHHHSSCCBCCSCTTTHHHHHHHHHHHHHHTCC---CCCCCCCBCSSEEEEEETTTE
T ss_pred hhHCcEEEEECCcccChHHHHHHHHHhCCCcCcCCCchhhhHhhHHHHHHHhcCCc---cCceEEEeeccccceeecCCc
Confidence 99999999999999999999999999999999999999999999999999998752 357899999999999999999
Q ss_pred EEEEEecCCcCCCCcEEEEEeecccccceeEEEeecCcccccCCceeEEEEeeCCCCCCCCccEEEEEEEEcCCccEEEE
Q psy15216 2423 VEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADGLLSIF 2502 (2602)
Q Consensus 2423 ~~~ii~k~t~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~~~~~~~g~~~i~v~f~id~~g~l~V~ 2502 (2602)
|.++|+||++||+++++.|++..|+|+.+.|.||||++..+.+|..||+|.|+++||.|+|.++|+|+|++|.||+|+|+
T Consensus 377 ~~~li~~~~~iP~~~~~~f~~~~d~q~~~~i~v~~ge~~~~~~~~~lg~~~l~~i~~~~~g~~~i~v~f~id~~gil~v~ 456 (509)
T 2v7y_A 377 FTKLIERNTTIPTSKSQVFTTAADNQTTVDIHVLQGERPMAADNKSLGRFQLTGIPPAPRGVPQIEVTFDIDANGIVHVR 456 (509)
T ss_dssp EEEEECTTCBSSEEEEEEECCSSTTCCEEEEEEEEESSSBGGGSEEEEEEEEECCCCCCTTCSCEEEEEEECTTSCEEEE
T ss_pred eEEEEeCCCcCCcceEEEEEeeccCcEEEEEEEEecCccccccCcEEEEEEEeCCCCCCCcccEEEEEEEEcCCceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCcEEEEEEecCCCCChHHHhcc
Q psy15216 2503 AYEKISGKKKFITIKPFYNMNLDEIKNG 2530 (2602)
Q Consensus 2503 a~~~~tg~~~~~~i~~~~~l~~~ei~~~ 2530 (2602)
++++.||++.+++|+..++||++||++.
T Consensus 457 a~~~~~g~~~~~~i~~~~~l~~~~i~~~ 484 (509)
T 2v7y_A 457 AKDLGTNKEQSITIKSSSGLSEEEIQRM 484 (509)
T ss_dssp EEETTTCCEEEEEECSSCSCCSHHHHHH
T ss_pred EEEcCCCcEEEEEEEecCCCCHHHHHHH
Confidence 9999999999999999999999999963
|
| >1kon_A Protein YEBC, YEBC; alpha/beta, two-domains, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics; 2.20A {Escherichia coli} SCOP: e.39.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-63 Score=562.37 Aligned_cols=228 Identities=36% Similarity=0.612 Sum_probs=205.5
Q ss_pred Hhh-cccCcccccccccccchhhHHHHHHHHHHHHHhc-CCCCCCChHHHHHHHHHHHcCCChhHHHHHHHhccCCCCCC
Q psy15216 1190 MLN-KAWGLEENSRLSFDAKRGKICTRIMRELRVAINF-GNNPDTNIKLRLAIEKALDANIPKNNIFRAIQKNNSNIKNE 1267 (2602)
Q Consensus 1190 ~l~-~~~~~~~~srl~~d~~~~~~~~~~~~~i~~a~~~-g~~p~~n~~l~~~~~~a~~~~~p~~~i~~ai~~~~~~~~~~ 1267 (2602)
|++ ++|.+++|.|.+.|++|+|+|+||+|||++|||. ||||++|||||.||++||++||||||||||||||+|+. +
T Consensus 4 MaGHsKWanIkh~K~~~Dakr~kiftKl~keI~vAak~GG~DP~~N~~Lr~aI~kAk~~nmPkd~IerAIkk~~G~~--~ 81 (249)
T 1kon_A 4 MAGHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPDANPRLRAAVDKALSNNMTRDTLNRAIARGVGGD--D 81 (249)
T ss_dssp --CCCSGGGTSSSTTTTTSCHHHHHHHHHHHHHHHHHC-----CCSTTTHHHHHHHHHTTCCHHHHHHHHSCC-------
T ss_pred cccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHhCCCHHHHHHHHHhccCCC--c
Confidence 778 5999999999999999999999999999999975 57999999999999999999999999999999999974 3
Q ss_pred CcceEEEEEEEeccCCcEEEEEEecCCchhhHHHHHHhhhccCccccCCcceeEeeceeEEEEECCCCChhHHHHHHHhc
Q psy15216 1268 NINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEK 1347 (2602)
Q Consensus 1268 ~~~~~~~~ye~~~p~g~~~~v~~~tdn~~r~~~~~r~~~~k~~g~~~~~g~v~~~f~~~g~~~~~~~~~~~~~~~~~~~~ 1347 (2602)
+.+|++++|||||||||||||||||||+|||+++||++|+|+||+||++|||+|||+|||+|.++++ ++|++||.|||+
T Consensus 82 ~~~~eei~YEgyGPgGvaiiVe~lTDN~nRt~~~vR~~f~K~GG~lg~~GsV~~~F~~kG~i~~~~~-~ed~~le~alea 160 (249)
T 1kon_A 82 DANMETIIYEGYGPGGTAIMIECLSDNRNRTVAEVRHAFSKCGGNLGTDGSVAYLFSKKGVISFEKG-DEDTIMEAALEA 160 (249)
T ss_dssp -CCCEEEEEEEEETTTEEEEEEEEESCHHHHHHHHHHHHHTTTCEECCTTSSGGGEEEEEEEEESSS-CHHHHHHHHHHH
T ss_pred ccCeEEEEEEEECCCceEEEEEEecCCHHHHHHHHHHHHhhcCceecCCCchhhhhheeeEEEECCC-CHHHHHHHHHhC
Confidence 6789999999999999999999999999999999999999999999999999999999999999864 899999999999
Q ss_pred CCceeeeccCceEEEEeCcccHHHHHHHHHhcCCCccccceeeeeceeeeccCCCCCCCHHHHHHHHHHHhhc
Q psy15216 1348 GAEDFLIDKDNKITIITSPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDATTPIDPRVVDKMIPYLRVQ 1420 (2602)
Q Consensus 1348 g~~d~~~~~~~~~~~~~~~~~~~~v~~aL~~~g~~~~~~ei~~iP~~~v~L~~~~~~~~~~v~eal~~~l~~~ 1420 (2602)
|||||+.++|+.|+|||+|++|.+|+++|+++|+++.++++.|+|++++.|+........+++++|++..+.+
T Consensus 161 GAeDv~~~e~~~~~v~t~p~~~~~V~~aL~~~g~~~~~aei~~~P~~~v~l~~e~~~~~~klid~Led~DDVq 233 (249)
T 1kon_A 161 GAEDVVTYDDGAIDVYTAWEEMGKVRDALEAAGLKADSAEVSMIPSTKADMDAETAPKLMRLIDMLEDCDDVQ 233 (249)
T ss_dssp TCSEEEECTTSCEEEEEEGGGHHHHHHHHHHTTCCCSEEEEEEEESSCCCCCTTTSHHHHHHHHHHHHSSSEE
T ss_pred CCceeeecCCceEEEEECHHHHHHHHHHHHHcCCCeeeeeeEECCCCceecCHHHHHHHHHHHHHHhcccChh
Confidence 9999964567889999999999999999999999999999999999999998877777788888888877664
|
| >1lfp_A Hypothetical protein AQ_1575; NEW fold, thermostability, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 1.72A {Aquifex aeolicus} SCOP: e.39.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-63 Score=560.61 Aligned_cols=228 Identities=35% Similarity=0.553 Sum_probs=207.8
Q ss_pred Hhh-cccCcccccccccccchhhHHHHHHHHHHHHHh-cCCCCCCChHHHHHHHHHHHcCCChhHHHHHHHhccCCCCCC
Q psy15216 1190 MLN-KAWGLEENSRLSFDAKRGKICTRIMRELRVAIN-FGNNPDTNIKLRLAIEKALDANIPKNNIFRAIQKNNSNIKNE 1267 (2602)
Q Consensus 1190 ~l~-~~~~~~~~srl~~d~~~~~~~~~~~~~i~~a~~-~g~~p~~n~~l~~~~~~a~~~~~p~~~i~~ai~~~~~~~~~~ 1267 (2602)
|++ ++|.+++|.|.+.|++|+|+|+||+|||++||| |||||++|||||.||++||++||||||||||||||+|+. +
T Consensus 1 MaGHsKWanIkh~K~~~Dakr~kiftKl~reI~vAak~GG~DP~~N~~Lr~aI~kAk~~nmPkd~IerAIkk~~G~~--~ 78 (249)
T 1lfp_A 1 MAGHSHWAQIKHKKAKVDAQRGKLFSKLIREIIVATRLGGPNPEFNPRLRTAIEQAKKANMPWENIERAIKKGAGEL--E 78 (249)
T ss_dssp ----CCSCCSSSSSSCTTTSHHHHHHHHHHHHHHHHHHHCSCGGGCHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCS--S
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCC--c
Confidence 678 599999999999999999999999999999996 568999999999999999999999999999999999974 3
Q ss_pred CcceEEEEEEEeccCCcEEEEEEecCCchhhHHHHHHhhhccCccccCCcceeEeeceeEEEEECC-CCChhHHHHHHHh
Q psy15216 1268 NINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNKNGGNLSKEGSVLFMFKHCGQLLFLP-NTKKNTLLDLALE 1346 (2602)
Q Consensus 1268 ~~~~~~~~ye~~~p~g~~~~v~~~tdn~~r~~~~~r~~~~k~~g~~~~~g~v~~~f~~~g~~~~~~-~~~~~~~~~~~~~ 1346 (2602)
+.+|++++|||||||||||||||||||+|||+++||++|+|+||+||++|||+|||+|||+|.+++ ..++|++||.|||
T Consensus 79 ~~~~eei~YEgyGPgGvaiiVe~lTDN~nRt~~~vR~~f~K~GG~lg~~GsV~~mF~~kG~i~~~~~~~~ed~~le~ale 158 (249)
T 1lfp_A 79 GEQFEEVIYEGYAPGGVAVMVLATTDNRNRTTSEVRHVFTKHGGNLGASGCVSYLFERKGYIEVPAKEVSEEELLEKAIE 158 (249)
T ss_dssp SCCCEEEEEEEEETTTEEEEEEEEESCHHHHHHHHHHHHHHTTCEECCTTSSGGGEEEEEEEEEEGGGSCHHHHHHHHHH
T ss_pred ccceEEEEEEEECCCceEEEEEEecCCHHHHHHHHHHHHhhcCceecCCCchhhhhheeeEEEEcCCCCCHHHHHHHHHh
Confidence 678999999999999999999999999999999999999999999999999999999999999986 4799999999999
Q ss_pred cCCceeeeccCceEEEEeCcccHHHHHHHHHhcCCCccccceeeeeceeeec-cCCCCCCCHHHHHHHHHHHhhc
Q psy15216 1347 KGAEDFLIDKDNKITIITSPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVF-KDATTPIDPRVVDKMIPYLRVQ 1420 (2602)
Q Consensus 1347 ~g~~d~~~~~~~~~~~~~~~~~~~~v~~aL~~~g~~~~~~ei~~iP~~~v~L-~~~~~~~~~~v~eal~~~l~~~ 1420 (2602)
+|||||+ ++|+.|+|||+|++|.+|+++|+++|+++.++++.|+|++++.| +........+++++|++..+.+
T Consensus 159 aGAeDv~-~e~~~~~v~t~p~~~~~V~~aL~~~g~~~~~aei~~~P~~~v~l~~~e~~~~~~klid~Led~DDVq 232 (249)
T 1lfp_A 159 VGAEDVQ-PGEEVHIIYTVPEELYEVKENLEKLGVPIEKAQITWKPISTVQINDEETAQKVIKLLNALEELDDVQ 232 (249)
T ss_dssp HTCSEEE-CCSSEEEEEECGGGHHHHHHHHHTTTCCCSEEEEEEEESSCEECCCHHHHHHHHHHHHHHHTSTTEE
T ss_pred cCCceee-cCCceEEEEECHHHHHHHHHHHHHcCCCeeeeeeEECCCCceecCCHHHHHHHHHHHHHHhcccChh
Confidence 9999995 56788999999999999999999999999999999999999988 6555555566666666655543
|
| >4f3q_A Transcriptional regulatory protein CBU_1566; YEBC family; 2.15A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-63 Score=564.19 Aligned_cols=229 Identities=34% Similarity=0.608 Sum_probs=204.6
Q ss_pred HHhhc-ccCcccccccccccchhhHHHHHHHHHHHHHh-cCCCCCCChHHHHHHHHHHHcCCChhHHHHHHHhccCCCCC
Q psy15216 1189 DMLNK-AWGLEENSRLSFDAKRGKICTRIMRELRVAIN-FGNNPDTNIKLRLAIEKALDANIPKNNIFRAIQKNNSNIKN 1266 (2602)
Q Consensus 1189 ~~l~~-~~~~~~~srl~~d~~~~~~~~~~~~~i~~a~~-~g~~p~~n~~l~~~~~~a~~~~~p~~~i~~ai~~~~~~~~~ 1266 (2602)
-|.++ +|.+++|.|.+.|++|+|+|+||+|||++||| |||||++|||||.||++||++||||||||||||||+|+.
T Consensus 3 ~maGHsKWanIkh~K~~~Dakr~kiftKl~reI~vAak~GG~DP~~N~~Lr~aI~~Ak~~nmPkd~IerAIkk~~g~~-- 80 (247)
T 4f3q_A 3 AMAGHSKWANIKHAKARQDAKRGKVFTKLIREITVAARLGGEDIDSNPRLRAVVDKAFAANMPKDTITRAIKRGAGSG-- 80 (247)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCGGGCHHHHHHHHHHHHTTCCHHHHHHHHHHCC-----
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCC--
Confidence 37785 99999999999999999999999999999997 578999999999999999999999999999999999975
Q ss_pred CCcceEEEEEEEeccCCcEEEEEEecCCchhhHHHHHHhhhccCccccCCcceeEeeceeEEEEECCCCChhHHHHHHHh
Q psy15216 1267 ENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALE 1346 (2602)
Q Consensus 1267 ~~~~~~~~~ye~~~p~g~~~~v~~~tdn~~r~~~~~r~~~~k~~g~~~~~g~v~~~f~~~g~~~~~~~~~~~~~~~~~~~ 1346 (2602)
++.+|++++|||||||||||||||||||+|||+++||++|+|+||+||++|||+|||+|||+|.++++.++|++||.|||
T Consensus 81 ~~~~yeei~YEgyGPgGvaviVe~lTDN~nRT~~~vR~~f~K~gG~lg~~GsV~~~F~~kG~i~~~~~~~~d~~~e~aie 160 (247)
T 4f3q_A 81 AGDNLVEVRYEGYGPSGVAVMVDCLTDNKNRTVAEVRHAFSKCDGNLGTEGSVAYLFKQRGLITFPPNSDEEKIMEIALE 160 (247)
T ss_dssp --CCCEEEEEEEECGGGCEEEEEEEESCHHHHHHHHHHHHHHTTCEECCTTSSGGGEEEEEEEEECTTCCHHHHHHHHHH
T ss_pred CcCCceEEEEEEEcCCCeEEEEEEeCCCHhHHHHHHHHHHHhcCceECCCCceeEEEeeeEEEEECCCCCHHHHHHHHHh
Confidence 36789999999999999999999999999999999999999999999999999999999999999877899999999999
Q ss_pred cCCceeeeccCceEEEEeCcccHHHHHHHHHhcCCCccccceeeeeceeeeccCCCCCCCHHHHHHHHHHHhh
Q psy15216 1347 KGAEDFLIDKDNKITIITSPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDATTPIDPRVVDKMIPYLRV 1419 (2602)
Q Consensus 1347 ~g~~d~~~~~~~~~~~~~~~~~~~~v~~aL~~~g~~~~~~ei~~iP~~~v~L~~~~~~~~~~v~eal~~~l~~ 1419 (2602)
+|||||++++|+.|+|||+|++|.+|+++|+++|+++.++++.|+|++++.|+........+++++|++..+.
T Consensus 161 aGAeDv~~~edg~~~v~t~p~~~~~V~~aL~~~g~~~~~aei~~~P~~~v~l~~e~~~~~~klid~Led~dDV 233 (247)
T 4f3q_A 161 VGAEDVTTNDDGSIDVTTLPEDFEKIRNAMKAADLNPSHAEVTVLASTEVGLDKDSAEQMLRLTEMLEDLDDV 233 (247)
T ss_dssp HTCSEEEECTTSCEEEEECGGGHHHHHHHHHHTTCCCSEEEEEEEESSCEECCHHHHHHHHHHHHHHHTSTTE
T ss_pred CCCceeeecCCceEEEEECHHHHHHHHHHHHHcCCCeeEEEEEEecCCccccCHHHHHHHHHHHHHhhcCcCc
Confidence 9999997766778999999999999999999999999999999999999988655555555566666655554
|
| >1mw7_A Hypothetical protein HP0162; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Helicobacter pylori} SCOP: e.39.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-62 Score=552.25 Aligned_cols=223 Identities=26% Similarity=0.387 Sum_probs=184.9
Q ss_pred hcccCcccccccccccchhhHHHHHHHHHHHHHhc-CCCCCCChHHHHHHHHHHHcCCChhHHHHHHHhccCCCCCCCcc
Q psy15216 1192 NKAWGLEENSRLSFDAKRGKICTRIMRELRVAINF-GNNPDTNIKLRLAIEKALDANIPKNNIFRAIQKNNSNIKNENIN 1270 (2602)
Q Consensus 1192 ~~~~~~~~~srl~~d~~~~~~~~~~~~~i~~a~~~-g~~p~~n~~l~~~~~~a~~~~~p~~~i~~ai~~~~~~~~~~~~~ 1270 (2602)
+++|.+++|.|.+.|++|+|+|+||+|||++|||. ||||++|||||.||++||++||||||||||||||+|+ +.+
T Consensus 2 GsKWanIkh~K~~~Dakr~k~ftKl~keI~vAak~GG~DP~~N~~Lr~aI~kAk~~nmPkd~IerAIkk~~g~----~~~ 77 (240)
T 1mw7_A 2 GRAFEYRRAAKEKRWDKMSKVFPKLAKAITLAAKDGGSEPDTNAKLRTAILNAKAQNMPKDNIDAAIKRASSK----EGN 77 (240)
T ss_dssp -------------------CCHHHHHHHHHHHHHTTCSCGGGCHHHHHHHHHHHHHTCCHHHHHHHHHHTTST----TCC
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHhCCCHHHHHHHHHHhcCC----CCC
Confidence 47899999999999999999999999999999975 5799999999999999999999999999999999996 456
Q ss_pred eEEEEEEEeccCCcEEEEEEecCCchhhHHHHHHhhhccC-ccccCCcceeEeeceeEEEEECC------CCChhHHHHH
Q psy15216 1271 YIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNKNG-GNLSKEGSVLFMFKHCGQLLFLP------NTKKNTLLDL 1343 (2602)
Q Consensus 1271 ~~~~~ye~~~p~g~~~~v~~~tdn~~r~~~~~r~~~~k~~-g~~~~~g~v~~~f~~~g~~~~~~------~~~~~~~~~~ 1343 (2602)
|++++|||||||||||||||||||+|||+++||++|+|+| |+||++|||+|||+|||+|.+++ ..++|++||+
T Consensus 78 ~eei~YEgyGPgGvaiiVe~lTDN~nRt~~~vR~~f~K~g~G~lg~~GsV~~~F~~kG~i~~~~~~~~~~~~~ed~~le~ 157 (240)
T 1mw7_A 78 LSEITYEGKANFGVLIIMECMTDNPTRTIANLKSYFNKTQGASIVPNGSLEFMFNRKSVFECLKNEVENLKLSLEDLEFA 157 (240)
T ss_dssp CEEEEEEEEETTTEEEEEEEEESCHHHHHHHHHHHHTTSTTCEEECTTTTTTSEEEEEEEEEEHHHHHHTTCCHHHHHHH
T ss_pred eEEEEEEEECCCceEEEEEEecCCHHHHHHHHHHHHhhcCCeeeCCCCcchhhheeeeEEEEecCccccCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999 99999999999999999999985 2699999999
Q ss_pred HHhcCCceeeeccCceEEEEeCcccHHHHHHHHHhcCCCccccceeeeeceeeeccCCCCCCCHHHHHHHHHHHhh
Q psy15216 1344 ALEKGAEDFLIDKDNKITIITSPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDATTPIDPRVVDKMIPYLRV 1419 (2602)
Q Consensus 1344 ~~~~g~~d~~~~~~~~~~~~~~~~~~~~v~~aL~~~g~~~~~~ei~~iP~~~v~L~~~~~~~~~~v~eal~~~l~~ 1419 (2602)
|||+|||||+ ++|+.|+|||+|++|.+|+++|+++|+++.++++.|+|++++.|+........+++++|++..+.
T Consensus 158 aleaGAeDv~-~e~~~~~v~t~p~~~~~V~~aL~~~g~~~~~aei~~~P~~~v~l~~e~~~~~~klid~Led~DDV 232 (240)
T 1mw7_A 158 LIDYGLEELE-EVEDKIIIRGDYNSFKLLNEGFESLKLPILKASLQRIATTPIELNDEQMELTEKLLDRIEDDDDV 232 (240)
T ss_dssp HGGGTEEEEE-EETTEEEEEEEGGGHHHHHHHHHHTTCCCSEEEEEEEESSCBCCCHHHHHHHHHHHHHHHTSTTE
T ss_pred HHHCCCceee-cCCceEEEEECHHHHHHHHHHHHHcCCCeeeeeeEeCCCCCcccCHHHHHHHHHHHHHHhcccCc
Confidence 9999999996 56788999999999999999999999999999999999998877544444444555555544443
|
| >3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-53 Score=553.84 Aligned_cols=367 Identities=37% Similarity=0.563 Sum_probs=335.4
Q ss_pred ccCCceEEEEEcCcccEEEEEEECCeeEEEeCCCCCccccEEEEEecCCcEEEcHHHHhhhccCCCCchhhhhhhhCCCC
Q psy15216 633 VKNKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDL 712 (2602)
Q Consensus 633 ~~~~~~vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~v~~~~~~~~~vG~~A~~~~~~~p~~~~~~~K~~lg~~~ 712 (2602)
..++..+||||||||||+||++.+|.+++++|+.|++++||+|+|.++ +++||..|+.+...+|.++++++||+||+++
T Consensus 19 ~~~~~~viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~~-~~~vG~~A~~~~~~~~~~~~~~~Kr~lg~~~ 97 (404)
T 3i33_A 19 YFQSMPAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMNPTNTIFDAKRLIGRKF 97 (404)
T ss_dssp ----CCCEEEEECSSEEEEEEEETTEEEECCCTTSCSSEECCEEECSS-CEEETHHHHHTTTTCSTTEECCGGGTTTCCT
T ss_pred hhccCCEEEEEcCCccEEEEEEECCeeEEEECCCCCcccceEEEECCC-CEEecHHHHHhhHhChhhhHHHHHHHhCCCC
Confidence 335667899999999999999999999999999999999999999766 6899999999999999999999999999998
Q ss_pred CCCC----CCCCCeeeecCCCceEEEEe--C--ceeCHHHHHHHHHHHHHHHHHHhhcCccceEEEEEcCCCCHHHHHHH
Q psy15216 713 KNIN----TNSFPYDFQNKFGMLHIKTI--S--GIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFT 784 (2602)
Q Consensus 713 ~~~~----~~~~~~~~~~~~~~~~~~~~--~--~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~~ 784 (2602)
++.. ...+||.+...+|...+... + ..++|+++++++|++|++.++.+++.++.++|||||++|++.||++|
T Consensus 98 ~~~~~~~~~~~~p~~~~~~~g~~~~~v~~~~~~~~~~~~ei~a~~L~~l~~~a~~~~~~~~~~~vitvPa~~~~~~r~~~ 177 (404)
T 3i33_A 98 EDATVQSDMKHWPFRVVSEGGKPKVQVEYKGETKTFFPEEISSMVLTKMKEIAEAYLGGKVHSAVITVPAYFNDSQRQAT 177 (404)
T ss_dssp TSHHHHHHHTTCSSEEEEETTEEEEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHSSCCCEEEEEECTTCCHHHHHHH
T ss_pred CcHHHHHHHhhCCceEEccCCceEEEEEeCCCceEEcHHHHHHHHHHHHHHHHHHHhccCCCcEEEEECCCCCHHHHHHH
Confidence 7742 23789998877777665543 3 58999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCceEEEechhHHHHHHhhhccCc---ccceEEEEEeCCceEEEEEEEEECCEEEEEEEecCCCCcchHHHHH
Q psy15216 785 KNAAKLAGLNVLRLLNEPTSAAIAYKLDKNI---FEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYC 861 (2602)
Q Consensus 785 ~~Aa~~AGl~~~~li~EPtAAAl~y~~~~~~---~~~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~ 861 (2602)
++|++.||++++++++||+|||++|+..... .+..++|||+||||||++++++.++.++++++.++..+||.+||+.
T Consensus 178 ~~a~~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~~~vlV~D~GgGT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~ 257 (404)
T 3i33_A 178 KDAGTITGLNVLRIINEPTAAAIAYGLDKKGCAGGEKNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNR 257 (404)
T ss_dssp HHHHHHHTCEEEEEEEHHHHHHHHTTTTSSCSSSSCCEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHHH
T ss_pred HHHHHHcCCCeEEEeccHHHHHHHHHhhcccccCCCceEEEEECCCCcEEEEEEEEeCCeEEEEEEeCCCCCCHHHHHHH
Confidence 9999999999999999999999999887652 4678999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcc-----CCHHHHHHHHHHHHHHHHHcccccceEEEEE-ecCCceEEEEeCHHHHHHHHHHHHHHHHHH
Q psy15216 862 LFSWIVKNAFLKK-----LSYKDVNILMIKSREIKELLSYQSSVKLNVK-LSDKKIVNITIDMKQFFTITQHLVNRTILL 935 (2602)
Q Consensus 862 l~~~l~~~~~~~~-----~~~~~~~~l~~~~e~~K~~LS~~~~~~~~i~-~~~~~~~~~~itr~~fe~l~~~~~~~~~~~ 935 (2602)
|.+++.++|..+. .+++.+.+|+.+||++|+.||...+..+.++ +.++.++.++|+|++|+++++++++++.++
T Consensus 258 l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~~~~~~~~~~~~~g~~~~~~i~r~~~~~~~~~~~~~i~~~ 337 (404)
T 3i33_A 258 MVSHLAEEFKRKHKKDIGPNKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGVDFYTSITRARFEELNADLFRGTLEP 337 (404)
T ss_dssp HHHHHHHHHHHHHSCCCTTCHHHHHHHHHHHHHHHHHTTTSSEEEEEEEEEETTEEEEEEEEHHHHHHHTHHHHHHTHHH
T ss_pred HHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHHHHhCCcCcceEEEEeeccCCceeEEEEcHHHHHHHHHHHHHHHHHH
Confidence 9999998876543 5788899999999999999999998888887 567888999999999999999999999999
Q ss_pred HHHHHHHcCCCccccceEEEecCccchHHHHHHHHhhc-cCcccCcCCcchHhHHHHHHHhHHhcC
Q psy15216 936 SSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFF-KTTLLTSIDPDKAVVFGAAIQANFLSG 1000 (2602)
Q Consensus 936 i~~~l~~a~~~~~~i~~V~LvGG~sr~P~v~~~l~~~f-~~~~~~~~~p~~aVa~GAa~~a~~l~~ 1000 (2602)
|.++|+++++...+|+.|+||||+|++|+|+++|++.| +.++..+.||++|||+|||++|+++++
T Consensus 338 i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~l~~ 403 (404)
T 3i33_A 338 VEKALRDAKLDKGQIQEIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILIG 403 (404)
T ss_dssp HHHHHHHHTCCGGGCCEEEEESGGGGCHHHHHHHHHHTTTCCCBCSSCTTTHHHHHHHHHHHHHC-
T ss_pred HHHHHHHcCCCHhhCCEEEEECCccccHHHHHHHHHHcCCCCCCCCcCHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999 788888999999999999999999875
|
| >4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-53 Score=551.86 Aligned_cols=366 Identities=26% Similarity=0.392 Sum_probs=329.1
Q ss_pred CCceEEEEEcCcccEEEEEEECCeeEEEeCCCCCccccEEEEEecCCcEEEcHHHHhhhccCCCCchhhhhhhhCCCCCC
Q psy15216 635 NKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKN 714 (2602)
Q Consensus 635 ~~~~vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~v~~~~~~~~~vG~~A~~~~~~~p~~~~~~~K~~lg~~~~~ 714 (2602)
.++.+||||||||||+||++.+|.++++.|+.|++++||+|+|.+ +.++||..|+.+..++|.++++++||+||+++++
T Consensus 11 m~~~vvGIDlGTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~-~~~~~G~~A~~~~~~~~~~~i~~~K~llg~~~~~ 89 (409)
T 4gni_A 11 GERVVIGITFGNSNSSIAHTVDDKAEVIANEDGDRQIPTILSYVD-GDEYYGQQAKNFLVRNPKNTVAYFRDILGQDFKS 89 (409)
T ss_dssp --CCEEEEEECSSEEEEEEEETTEEEEECCTTSCSSEECEEEEET-TEEEEHHHHHHHHHHCGGGEEESCGGGTTCCGGG
T ss_pred CCCcEEEEEcCCCeEEEEEEeCCceEEEECCCCCccCceEEEECC-CcEEEcHHHHHhhHhChHhhHHHHHHHhCCCccc
Confidence 356899999999999999999999999999999999999999975 4689999999999999999999999999999876
Q ss_pred CCCC--CCCeeeecCCCceEEEEeC--------ceeCHHHHHHHHHHHHHHHHHHhhcCccceEEEEEcCCCCHHHHHHH
Q psy15216 715 INTN--SFPYDFQNKFGMLHIKTIS--------GIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFT 784 (2602)
Q Consensus 715 ~~~~--~~~~~~~~~~~~~~~~~~~--------~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~~ 784 (2602)
.... .+++.+...+|.+.+.... ..++|+++++++|++|++.++.+++.++.++|||||++|++.||++|
T Consensus 90 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~ev~~~~L~~l~~~a~~~~~~~~~~~vitvPa~~~~~~r~~~ 169 (409)
T 4gni_A 90 VDPTHNHASAHPQEAGDNVVFTIKDKAEEDAEPSTLTVSEIATRYLRRLVGAASEYLGKKVTSAVITIPTNFTEKQKAAL 169 (409)
T ss_dssp CCCGGGTTSCCCEEETTEEEEEECCSSCSSCCCEEEEHHHHHHHHHHHHHHHHHHHHTSCCCEEEEEECTTCCHHHHHHH
T ss_pred hhhhhhccccceecCCCcEEEEEecCCCCCCcceEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHH
Confidence 4332 4455555566777776543 47999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCceEEEechhHHHHHHhhhcc--CcccceEEEEEeCCceEEEEEEEEECCEEEEEEEecCCCCcchHHHHHH
Q psy15216 785 KNAAKLAGLNVLRLLNEPTSAAIAYKLDK--NIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCL 862 (2602)
Q Consensus 785 ~~Aa~~AGl~~~~li~EPtAAAl~y~~~~--~~~~~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l 862 (2602)
++|++.|||+++++|+||+|||++|+... ...+..++|||+||||||+|++++.++.++++++.++..+||.+||+.|
T Consensus 170 ~~a~~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~~vlv~D~GgGT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~i 249 (409)
T 4gni_A 170 IAAAAAADLEVLQLISEPAAAVLAYDARPEATISDKIIVVADLGGSRSDVTVLASRSGMYTILATVHDYEYHGIALDKVL 249 (409)
T ss_dssp HHHHHHTTCEEEEEEEHHHHHHHHTTC------CCEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEESSSSHHHHHHHH
T ss_pred HHHHHHcCCCeEEEEcCHHHHHHHHhcccccCCCCCEEEEEECCCCceEEEEEEEeCCeEEEEEecCCCCcCHHHHHHHH
Confidence 99999999999999999999999998764 2356789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcc-------CCHHHHHHHHHHHHHHHHHcccccceEEEEE-ecCCceEEEEeCHHHHHHHHHHHHHHHHH
Q psy15216 863 FSWIVKNAFLKK-------LSYKDVNILMIKSREIKELLSYQSSVKLNVK-LSDKKIVNITIDMKQFFTITQHLVNRTIL 934 (2602)
Q Consensus 863 ~~~l~~~~~~~~-------~~~~~~~~l~~~~e~~K~~LS~~~~~~~~i~-~~~~~~~~~~itr~~fe~l~~~~~~~~~~ 934 (2602)
++++.++|..+. .+.+.+.+|+.+||++|+.||...++.+.++ +.++.++.++|||++|+++++|+++++..
T Consensus 250 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~~~~~i~i~~~~~~~~~~~~itr~~~~~~~~~~~~~i~~ 329 (409)
T 4gni_A 250 IDHFSKEFLKKNPGAKDPRENPRSLAKLRLEAESTKRALSRSTNASFSVESLIDGLDFASTINRLRYETIARTVFEGFNR 329 (409)
T ss_dssp HHHHHHHHHHHSTTCCCGGGSHHHHHHHHHHHHHHHHHHHHSSEEEEEEEEEETTEEEEEEEEHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCcccCHHHHHHHHHHHHHHHHhCCCCCceEEEeecccCCcceEEEeeHHHHHHHHHHHHHHHHH
Confidence 999999986432 4678899999999999999999999888888 57788999999999999999999999999
Q ss_pred HHHHHHHHcCCCccccceEEEecCccchHHHHHHHHhhccCc--c------cCcCCcchHhHHHHHHHhHHhcCC
Q psy15216 935 LSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTT--L------LTSIDPDKAVVFGAAIQANFLSGN 1001 (2602)
Q Consensus 935 ~i~~~l~~a~~~~~~i~~V~LvGG~sr~P~v~~~l~~~f~~~--~------~~~~~p~~aVa~GAa~~a~~l~~~ 1001 (2602)
+|+++|+++++...+|+.|+||||+|++|+|+++|++.|+.+ + ..+.||++|||+|||++|+.....
T Consensus 330 ~i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~~v~~P~~~~~~~~p~~ava~GAa~~~~~~~~~ 404 (409)
T 4gni_A 330 LVESAVKKAGLDPLDVDEVIMSGGTSNTPRIAANFRYIFPESTRILAPSTDPSALNPSELQARGAALQASLIQEH 404 (409)
T ss_dssp HHHHHHHHTTCCGGGCCEEEEESGGGGCHHHHHHHHHHSCTTSEEESTTTCTTCCCTTTHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHcCCCHHHCCEEEEECCccccHHHHHHHHHHcCCccccccccccCCCcCHHHHHHHHHHHHhhhhhhh
Confidence 999999999999999999999999999999999999999865 3 577899999999999999887643
|
| >4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-51 Score=533.93 Aligned_cols=365 Identities=27% Similarity=0.407 Sum_probs=323.0
Q ss_pred CcceEEEEEcCcccEEEEEEECCeEEEEeCCCCCccccEEEEEecCCcEEecHHHHhhhccCCCCchhhhhhhcCCCCCC
Q psy15216 2031 NKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKN 2110 (2602)
Q Consensus 2031 ~~~~vvGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~~~~~~vG~~A~~~~~~~p~~~~~~~K~~lg~~~~~ 2110 (2602)
..+++||||||||||+||++.+|.++++.|+.|++++||+|+|. +++++||..|+.+...+|.++++++||+||+++.+
T Consensus 11 m~~~vvGIDlGTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~-~~~~~~G~~A~~~~~~~~~~~i~~~K~llg~~~~~ 89 (409)
T 4gni_A 11 GERVVIGITFGNSNSSIAHTVDDKAEVIANEDGDRQIPTILSYV-DGDEYYGQQAKNFLVRNPKNTVAYFRDILGQDFKS 89 (409)
T ss_dssp --CCEEEEEECSSEEEEEEEETTEEEEECCTTSCSSEECEEEEE-TTEEEEHHHHHHHHHHCGGGEEESCGGGTTCCGGG
T ss_pred CCCcEEEEEcCCCeEEEEEEeCCceEEEECCCCCccCceEEEEC-CCcEEEcHHHHHhhHhChHhhHHHHHHHhCCCccc
Confidence 35689999999999999999999999999999999999999997 56789999999999999999999999999998766
Q ss_pred CCC--CCCCeeeecCCCceEEEecC--------ceeCHHHHHHHHHHHHHHHHHHhhccccceEEEeeCCCCCHHHHHHH
Q psy15216 2111 INT--NSFPYDFQNKFGMLHIKTIS--------GIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFT 2180 (2602)
Q Consensus 2111 ~~~--~~~~~~~~~~~g~~~~~~~~--------~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~l 2180 (2602)
... ...++.+....|.+.+.... ..++|+++++++|++|++.++.+++.++.++|||||++|++.||++|
T Consensus 90 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~ev~~~~L~~l~~~a~~~~~~~~~~~vitvPa~~~~~~r~~~ 169 (409)
T 4gni_A 90 VDPTHNHASAHPQEAGDNVVFTIKDKAEEDAEPSTLTVSEIATRYLRRLVGAASEYLGKKVTSAVITIPTNFTEKQKAAL 169 (409)
T ss_dssp CCCGGGTTSCCCEEETTEEEEEECCSSCSSCCCEEEEHHHHHHHHHHHHHHHHHHHHTSCCCEEEEEECTTCCHHHHHHH
T ss_pred hhhhhhccccceecCCCcEEEEEecCCCCCCcceEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHH
Confidence 432 22344444555666655432 47899999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCceeEeechhHHHHHHhhhcc--CCCCceEEEEEeCCceEEEEEEEEeCCEEEEEEEecCCCCchhHHHHHH
Q psy15216 2181 KNAAKLAGLNVLRLLNEPTSAAIAYKLDK--NIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCL 2258 (2602)
Q Consensus 2181 ~~Aa~~AGl~~~~li~EP~AAAl~y~~~~--~~~~~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l 2258 (2602)
++|++.||++++.+++||+|||++|.... ...+..++|||+||||||+|++++.++.++++++.++..+||.+||+.|
T Consensus 170 ~~a~~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~~vlv~D~GgGT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~i 249 (409)
T 4gni_A 170 IAAAAAADLEVLQLISEPAAAVLAYDARPEATISDKIIVVADLGGSRSDVTVLASRSGMYTILATVHDYEYHGIALDKVL 249 (409)
T ss_dssp HHHHHHTTCEEEEEEEHHHHHHHHTTC------CCEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEESSSSHHHHHHHH
T ss_pred HHHHHHcCCCeEEEEcCHHHHHHHHhcccccCCCCCEEEEEECCCCceEEEEEEEeCCeEEEEEecCCCCcCHHHHHHHH
Confidence 99999999999999999999999998764 2456789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcC--------ChhHHHHHHHHHHHHHHHhcccceEEEEEE-ecCCceEEEEcCHHHHHHHHHHHHHHHH
Q psy15216 2259 FSWIVKNAFLKKL--------SYKDVNILMIKSREIKELLSYQSSVKLNVK-LSDKKIVNITIDMKQFFTITQHLVNRTI 2329 (2602)
Q Consensus 2259 ~~~l~~~~~~~~~--------~~~~~~~l~~~~e~~K~~ls~~~~~~~~i~-~~~~~~~~~~itr~~fe~l~~~~~~~~~ 2329 (2602)
++++.+++ .++. ..+...+|+.+||++|+.||...+..+.++ +.++.++.++|||++|+++++|+++++.
T Consensus 250 ~~~l~~~~-~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~~~~~i~i~~~~~~~~~~~~itr~~~~~~~~~~~~~i~ 328 (409)
T 4gni_A 250 IDHFSKEF-LKKNPGAKDPRENPRSLAKLRLEAESTKRALSRSTNASFSVESLIDGLDFASTINRLRYETIARTVFEGFN 328 (409)
T ss_dssp HHHHHHHH-HHHSTTCCCGGGSHHHHHHHHHHHHHHHHHHHHSSEEEEEEEEEETTEEEEEEEEHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHH-HHHhCCCCCcccCHHHHHHHHHHHHHHHHhCCCCCceEEEeecccCCcceEEEeeHHHHHHHHHHHHHHHH
Confidence 99999874 3222 235678899999999999999999888887 5677889999999999999999999999
Q ss_pred HHHHHHHHHcCCCccccceEEEEeCccchHHHHHHHHhhcCCc--c------cCCCCccchhhhHHHHHhHHhcCC
Q psy15216 2330 LLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTT--L------LTSIDPDKAVVFGAAIQANFLSGN 2397 (2602)
Q Consensus 2330 ~~i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~--~------~~~~~p~~aVa~GAa~~a~~~~~~ 2397 (2602)
++|+++|+++++...+|+.|+||||+|++|+|+++|++.|+.+ + ....||++|||+|||++|+.....
T Consensus 329 ~~i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~~v~~P~~~~~~~~p~~ava~GAa~~~~~~~~~ 404 (409)
T 4gni_A 329 RLVESAVKKAGLDPLDVDEVIMSGGTSNTPRIAANFRYIFPESTRILAPSTDPSALNPSELQARGAALQASLIQEH 404 (409)
T ss_dssp HHHHHHHHHTTCCGGGCCEEEEESGGGGCHHHHHHHHHHSCTTSEEESTTTCTTCCCTTTHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHcCCCHHHCCEEEEECCccccHHHHHHHHHHcCCccccccccccCCCcCHHHHHHHHHHHHhhhhhhh
Confidence 9999999999999999999999999999999999999999865 3 578999999999999999887654
|
| >1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-51 Score=531.33 Aligned_cols=362 Identities=40% Similarity=0.614 Sum_probs=326.8
Q ss_pred eEEEEEcCcccEEEEEEECCeeEEEeCCCCCccccEEEEEecCCcEEEcHHHHhhhccCCCCchhhhhhhhCCCCCCCC-
Q psy15216 638 VSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNIN- 716 (2602)
Q Consensus 638 ~vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~v~~~~~~~~~vG~~A~~~~~~~p~~~~~~~K~~lg~~~~~~~- 716 (2602)
.+||||||||||+||++.+|.++++.|+.|.+++||+|+|.++++++||+.|+.+...+|.++++++||+||+++.+..
T Consensus 3 ~~vGIDlGTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~~ 82 (383)
T 1dkg_D 3 KIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEV 82 (383)
T ss_dssp CCCEEECCSSEEEEEEEETTEEEECCCTTSCSEEECEEEECTTSCEEESHHHHTTSTTCGGGEEECGGGTTTCBSCSHHH
T ss_pred cEEEEEcCCCCEEEEEEECCeeEEEECCCCCcccceEEEEECCCCEEECHHHHHhhhhCccceeehhHHhhCCCCCcHHH
Confidence 4699999999999999999999999999999999999999877789999999999999999999999999999876531
Q ss_pred ---CCCCCeeee-cCCCceEEEEeCceeCHHHHHHHHHHHHHHHHHHhhcCccceEEEEEcCCCCHHHHHHHHHHHHHcC
Q psy15216 717 ---TNSFPYDFQ-NKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAG 792 (2602)
Q Consensus 717 ---~~~~~~~~~-~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~~~~Aa~~AG 792 (2602)
...+||.+. ..++...+...+..++|+++++++|++|++.++++++.++.++|||||++|++.||+++++|++.||
T Consensus 83 ~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~i~~~~L~~l~~~a~~~~~~~~~~~vitvP~~~~~~~r~~~~~a~~~aG 162 (383)
T 1dkg_D 83 QRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAG 162 (383)
T ss_dssp HHHTTTCSSEEEECSSSBEEEEETTEEECHHHHHHHHHHHHHHHHHHHHSSCCCEEEECBCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHhhcCCeEEEEcCCCcEEEEECCEEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHcC
Confidence 225788875 5667777777777899999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEechhHHHHHHhhhccCcccceEEEEEeCCceEEEEEEEEE----CCEEEEEEEecCCCCcchHHHHHHHHHHHH
Q psy15216 793 LNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFK----NGVFKVLSVGGDSNLGGDDFDYCLFSWIVK 868 (2602)
Q Consensus 793 l~~~~li~EPtAAAl~y~~~~~~~~~~vlV~D~GGGT~Dvsv~~~~----~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~ 868 (2602)
++++++++||+|||++|+......+..++|||+||||||+++++.. ++.++++++.++..+||++||+.|.+++.+
T Consensus 163 l~~~~li~Ep~Aaa~~~~~~~~~~~~~~lVvD~Gggttdvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~ 242 (383)
T 1dkg_D 163 LEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVE 242 (383)
T ss_dssp CEESCCCBHHHHHHHHHTCCC-CCEEEEEEEEECSSCEEEEEEEEEC----CCCEEEEEEEESSCSHHHHHHHHHHHHHH
T ss_pred CceEEEeccHHHHHHHHHhccCCCCcEEEEEEcCCCeEEEEEEEEEecCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999987654356799999999999999999998 678999999999999999999999999999
Q ss_pred HHhhcc-----CCHHHHHHHHHHHHHHHHHcccccceEEEEEe-c---CC-ceEEEEeCHHHHHHHHHHHHHHHHHHHHH
Q psy15216 869 NAFLKK-----LSYKDVNILMIKSREIKELLSYQSSVKLNVKL-S---DK-KIVNITIDMKQFFTITQHLVNRTILLSSK 938 (2602)
Q Consensus 869 ~~~~~~-----~~~~~~~~l~~~~e~~K~~LS~~~~~~~~i~~-~---~~-~~~~~~itr~~fe~l~~~~~~~~~~~i~~ 938 (2602)
+|..+. .+++.+.+|+.+||++|+.||...+..+.++. . +| .++.++|||++|+++++|+++++.+++.+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~~~~~i~i~~~~~~~~G~~~~~~~it~~~~~~~~~~~~~~i~~~i~~ 322 (383)
T 1dkg_D 243 EFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIELLKV 322 (383)
T ss_dssp HHHHHHCCCSTTCHHHHHHHHHHHHHHHHHTTSSSEEEEEEEEEEEETTEEEEEEEEEEHHHHHHHSHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcccCHHHHHHHHHHHHHHHHHhCCCCceEEEEecccccCCCCeeEEEEEeHHHHHHHHHHHHHHHHHHHHH
Confidence 886442 45788899999999999999998887777762 2 23 45678999999999999999999999999
Q ss_pred HHHHcCCCccccceEEEecCccchHHHHHHHHhhccCcccCcCCcchHhHHHHHHHhHHhc
Q psy15216 939 ALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLS 999 (2602)
Q Consensus 939 ~l~~a~~~~~~i~~V~LvGG~sr~P~v~~~l~~~f~~~~~~~~~p~~aVa~GAa~~a~~l~ 999 (2602)
+|+++++.+.+++.|+|+||+|++|+|+++|++.|+.++..+.||++|||+|||++|++++
T Consensus 323 ~l~~~~~~~~~i~~IvL~GG~s~~p~l~~~l~~~~~~~v~~~~~p~~ava~Gaa~~a~~l~ 383 (383)
T 1dkg_D 323 ALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLT 383 (383)
T ss_dssp HHHTTTCCTTTCCEEEEESGGGGSHHHHHHHHHHHSSCCBCSSCTTTHHHHHHHHHTTTTC
T ss_pred HHHHcCCCHhhCCEEEEecCccccHHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHHhhC
Confidence 9999999888999999999999999999999999998888999999999999999998663
|
| >3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-50 Score=530.11 Aligned_cols=366 Identities=37% Similarity=0.566 Sum_probs=328.7
Q ss_pred cCcceEEEEEcCcccEEEEEEECCeEEEEeCCCCCccccEEEEEecCCcEEecHHHHhhhccCCCCchhhhhhhcCCCCC
Q psy15216 2030 KNKCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLK 2109 (2602)
Q Consensus 2030 ~~~~~vvGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~~~~~~vG~~A~~~~~~~p~~~~~~~K~~lg~~~~ 2109 (2602)
...+.+||||||||||+||++.+|.++++.|+.|++++||+|+|.++ +++||..|+.+...+|.++++++||+||+++.
T Consensus 20 ~~~~~viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~~-~~~vG~~A~~~~~~~~~~~~~~~Kr~lg~~~~ 98 (404)
T 3i33_A 20 FQSMPAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMNPTNTIFDAKRLIGRKFE 98 (404)
T ss_dssp ---CCCEEEEECSSEEEEEEEETTEEEECCCTTSCSSEECCEEECSS-CEEETHHHHHTTTTCSTTEECCGGGTTTCCTT
T ss_pred hccCCEEEEEcCCccEEEEEEECCeeEEEECCCCCcccceEEEECCC-CEEecHHHHHhhHhChhhhHHHHHHHhCCCCC
Confidence 34566899999999999999999999999999999999999999754 78999999999999999999999999999987
Q ss_pred CCC----CCCCCeeeecCCCceEEEe--cC--ceeCHHHHHHHHHHHHHHHHHHhhccccceEEEeeCCCCCHHHHHHHH
Q psy15216 2110 NIN----TNSFPYDFQNKFGMLHIKT--IS--GIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTK 2181 (2602)
Q Consensus 2110 ~~~----~~~~~~~~~~~~g~~~~~~--~~--~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~l~ 2181 (2602)
+.. .+.+||.+...+|...+.. .+ ..++|+++++++|++|++.++.+++.++.++|||||++|++.||++|+
T Consensus 99 ~~~~~~~~~~~p~~~~~~~g~~~~~v~~~~~~~~~~~~ei~a~~L~~l~~~a~~~~~~~~~~~vitvPa~~~~~~r~~~~ 178 (404)
T 3i33_A 99 DATVQSDMKHWPFRVVSEGGKPKVQVEYKGETKTFFPEEISSMVLTKMKEIAEAYLGGKVHSAVITVPAYFNDSQRQATK 178 (404)
T ss_dssp SHHHHHHHTTCSSEEEEETTEEEEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHSSCCCEEEEEECTTCCHHHHHHHH
T ss_pred cHHHHHHHhhCCceEEccCCceEEEEEeCCCceEEcHHHHHHHHHHHHHHHHHHHhccCCCcEEEEECCCCCHHHHHHHH
Confidence 642 3578888876666655443 23 579999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCceeEeechhHHHHHHhhhccCC---CCceEEEEEeCCceEEEEEEEEeCCEEEEEEEecCCCCchhHHHHHH
Q psy15216 2182 NAAKLAGLNVLRLLNEPTSAAIAYKLDKNI---FEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCL 2258 (2602)
Q Consensus 2182 ~Aa~~AGl~~~~li~EP~AAAl~y~~~~~~---~~~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l 2258 (2602)
+|++.||++++.+++||+|||++|+..... .+..++|||+||||||++++++.++.++++++.++..+||.+||+.|
T Consensus 179 ~a~~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~~~vlV~D~GgGT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l 258 (404)
T 3i33_A 179 DAGTITGLNVLRIINEPTAAAIAYGLDKKGCAGGEKNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRM 258 (404)
T ss_dssp HHHHHHTCEEEEEEEHHHHHHHHTTTTSSCSSSSCCEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHH
T ss_pred HHHHHcCCCeEEEeccHHHHHHHHHhhcccccCCCceEEEEECCCCcEEEEEEEEeCCeEEEEEEeCCCCCCHHHHHHHH
Confidence 999999999999999999999999876542 46789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhc-----CChhHHHHHHHHHHHHHHHhcccceEEEEEE-ecCCceEEEEcCHHHHHHHHHHHHHHHHHHH
Q psy15216 2259 FSWIVKNAFLKK-----LSYKDVNILMIKSREIKELLSYQSSVKLNVK-LSDKKIVNITIDMKQFFTITQHLVNRTILLS 2332 (2602)
Q Consensus 2259 ~~~l~~~~~~~~-----~~~~~~~~l~~~~e~~K~~ls~~~~~~~~i~-~~~~~~~~~~itr~~fe~l~~~~~~~~~~~i 2332 (2602)
.+++.+++..+. ...+...+|+.+||++|+.||......+.++ +.++.++.++++|++|+++++++++++.+++
T Consensus 259 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~~~~~~~~~~~~~g~~~~~~i~r~~~~~~~~~~~~~i~~~i 338 (404)
T 3i33_A 259 VSHLAEEFKRKHKKDIGPNKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGVDFYTSITRARFEELNADLFRGTLEPV 338 (404)
T ss_dssp HHHHHHHHHHHHSCCCTTCHHHHHHHHHHHHHHHHHTTTSSEEEEEEEEEETTEEEEEEEEHHHHHHHTHHHHHHTHHHH
T ss_pred HHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHHHHhCCcCcceEEEEeeccCCceeEEEEcHHHHHHHHHHHHHHHHHHH
Confidence 999987632211 1345677899999999999999998888887 5677788999999999999999999999999
Q ss_pred HHHHHHcCCCccccceEEEEeCccchHHHHHHHHhhc-CCcccCCCCccchhhhHHHHHhHHhcC
Q psy15216 2333 SKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFF-KTTLLTSIDPDKAVVFGAAIQANFLSG 2396 (2602)
Q Consensus 2333 ~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f-~~~~~~~~~p~~aVa~GAa~~a~~~~~ 2396 (2602)
.++|+++++...+|+.|+||||+|++|+|+++|++.| +.++..+.||++|||+|||++|+.+++
T Consensus 339 ~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~l~~ 403 (404)
T 3i33_A 339 EKALRDAKLDKGQIQEIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILIG 403 (404)
T ss_dssp HHHHHHHTCCGGGCCEEEEESGGGGCHHHHHHHHHHTTTCCCBCSSCTTTHHHHHHHHHHHHHC-
T ss_pred HHHHHHcCCCHhhCCEEEEECCccccHHHHHHHHHHcCCCCCCCCcCHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999 788889999999999999999998875
|
| >1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-49 Score=511.60 Aligned_cols=362 Identities=40% Similarity=0.615 Sum_probs=320.9
Q ss_pred eEEEEEcCcccEEEEEEECCeEEEEeCCCCCccccEEEEEecCCcEEecHHHHhhhccCCCCchhhhhhhcCCCCCCC--
Q psy15216 2034 VSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNI-- 2111 (2602)
Q Consensus 2034 ~vvGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~~~~~~vG~~A~~~~~~~p~~~~~~~K~~lg~~~~~~-- 2111 (2602)
.+||||||||||+||++.+|.++++.|++|.+.+||+|+|.++++++||+.|+.+...+|+++++++||+||+.+.+.
T Consensus 3 ~~vGIDlGTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~~ 82 (383)
T 1dkg_D 3 KIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEV 82 (383)
T ss_dssp CCCEEECCSSEEEEEEEETTEEEECCCTTSCSEEECEEEECTTSCEEESHHHHTTSTTCGGGEEECGGGTTTCBSCSHHH
T ss_pred cEEEEEcCCCCEEEEEEECCeeEEEECCCCCcccceEEEEECCCCEEECHHHHHhhhhCccceeehhHHhhCCCCCcHHH
Confidence 479999999999999999999999999999999999999987888999999999999999999999999999987543
Q ss_pred --CCCCCCeeee-cCCCceEEEecCceeCHHHHHHHHHHHHHHHHHHhhccccceEEEeeCCCCCHHHHHHHHHHHHHcC
Q psy15216 2112 --NTNSFPYDFQ-NKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAG 2188 (2602)
Q Consensus 2112 --~~~~~~~~~~-~~~g~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~l~~Aa~~AG 2188 (2602)
..+.+||.+. ..++...+...+..++|+++++++|+++++.++.+++.++.++|||||++|++.||+++++|++.||
T Consensus 83 ~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~i~~~~L~~l~~~a~~~~~~~~~~~vitvP~~~~~~~r~~~~~a~~~aG 162 (383)
T 1dkg_D 83 QRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAG 162 (383)
T ss_dssp HHHTTTCSSEEEECSSSBEEEEETTEEECHHHHHHHHHHHHHHHHHHHHSSCCCEEEECBCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHhhcCCeEEEEcCCCcEEEEECCEEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHcC
Confidence 2345788763 5566666666666899999999999999999999999889999999999999999999999999999
Q ss_pred CceeEeechhHHHHHHhhhccCCCCceEEEEEeCCceEEEEEEEEe----CCEEEEEEEecCCCCchhHHHHHHHHHHHH
Q psy15216 2189 LNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFK----NGVFKVLSVGGDSNLGGDDFDYCLFSWIVK 2264 (2602)
Q Consensus 2189 l~~~~li~EP~AAAl~y~~~~~~~~~~vlV~D~GGGT~Dvsv~~~~----~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~ 2264 (2602)
++++.+++||+|||++|+......+..++|||+||||||+++++.. ++.++++++.++..+||.+||+.|.+++.+
T Consensus 163 l~~~~li~Ep~Aaa~~~~~~~~~~~~~~lVvD~Gggttdvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~l~~ 242 (383)
T 1dkg_D 163 LEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVE 242 (383)
T ss_dssp CEESCCCBHHHHHHHHHTCCC-CCEEEEEEEEECSSCEEEEEEEEEC----CCCEEEEEEEESSCSHHHHHHHHHHHHHH
T ss_pred CceEEEeccHHHHHHHHHhccCCCCcEEEEEEcCCCeEEEEEEEEEecCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999987654356789999999999999999998 678899999998999999999999999998
Q ss_pred HHhhhc-----CChhHHHHHHHHHHHHHHHhcccceEEEEEEe-c---CC-ceEEEEcCHHHHHHHHHHHHHHHHHHHHH
Q psy15216 2265 NAFLKK-----LSYKDVNILMIKSREIKELLSYQSSVKLNVKL-S---DK-KIVNITIDMKQFFTITQHLVNRTILLSSK 2334 (2602)
Q Consensus 2265 ~~~~~~-----~~~~~~~~l~~~~e~~K~~ls~~~~~~~~i~~-~---~~-~~~~~~itr~~fe~l~~~~~~~~~~~i~~ 2334 (2602)
++..+. .......+|+.+||++|+.|+...+..+.++. . +| .++.++|||++|+++++|+++++.+++.+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~~~~~i~i~~~~~~~~G~~~~~~~it~~~~~~~~~~~~~~i~~~i~~ 322 (383)
T 1dkg_D 243 EFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIELLKV 322 (383)
T ss_dssp HHHHHHCCCSTTCHHHHHHHHHHHHHHHHHTTSSSEEEEEEEEEEEETTEEEEEEEEEEHHHHHHHSHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcccCHHHHHHHHHHHHHHHHHhCCCCceEEEEecccccCCCCeeEEEEEeHHHHHHHHHHHHHHHHHHHHH
Confidence 742221 12356678999999999999998887777762 2 22 45678999999999999999999999999
Q ss_pred HHHHcCCCccccceEEEEeCccchHHHHHHHHhhcCCcccCCCCccchhhhHHHHHhHHhc
Q psy15216 2335 ALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLS 2395 (2602)
Q Consensus 2335 ~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~aVa~GAa~~a~~~~ 2395 (2602)
+|+++++.+.+++.|+|+||+|++|+|+++|++.|+.++..+.||++|||+|||++|+.++
T Consensus 323 ~l~~~~~~~~~i~~IvL~GG~s~~p~l~~~l~~~~~~~v~~~~~p~~ava~Gaa~~a~~l~ 383 (383)
T 1dkg_D 323 ALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLT 383 (383)
T ss_dssp HHHTTTCCTTTCCEEEEESGGGGSHHHHHHHHHHHSSCCBCSSCTTTHHHHHHHHHTTTTC
T ss_pred HHHHcCCCHhhCCEEEEecCccccHHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHHhhC
Confidence 9999999888999999999999999999999999999999999999999999999997653
|
| >1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-35 Score=379.05 Aligned_cols=310 Identities=20% Similarity=0.250 Sum_probs=243.4
Q ss_pred eEEEEEcCcccEEEEEEECCeeEEEeCCCCCccccEEEEEecC-Cc-EEEcHHHHhhhccCCCCchhhhhhhhCCCCCCC
Q psy15216 638 VSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPD-GK-IYVGKKAKITQNIDPKNTISSIKRFIARDLKNI 715 (2602)
Q Consensus 638 ~vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~v~~~~~-~~-~~vG~~A~~~~~~~p~~~~~~~K~~lg~~~~~~ 715 (2602)
.+||||||||||++++..++ .++ .+||+|+|.++ ++ ++||..|++...++|.++...
T Consensus 4 ~~igIDlGT~~s~v~~~~~~--~~~-------~~PS~v~~~~~~~~~~~vG~~A~~~~~~~~~~~~~~------------ 62 (344)
T 1jce_A 4 KDIGIDLGTANTLVFLRGKG--IVV-------NEPSVIAIDSTTGEILKVGLEAKNMIGKTPATIKAI------------ 62 (344)
T ss_dssp CEEEEEECSSEEEEEETTTE--EEE-------EEESCEEEETTTCCEEEESHHHHTTTTCCCTTEEEE------------
T ss_pred ceEEEEcCcCcEEEEECCCC--EEE-------eeCcEEEEecCCCcEEEEcHHHHHhcccCCCCeEEE------------
Confidence 46999999999999875433 232 27999999876 44 589999998888888776421
Q ss_pred CCCCCCeeeecCCCceEEEEeCceeCHHHHHHHHHHHHHHHHHHhhcCccceEEEEEcCCCCHHHHHHHHHHHHHcCCce
Q psy15216 716 NTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNV 795 (2602)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~~~~Aa~~AGl~~ 795 (2602)
+|++ +|.+ .....+++++++++++++.. .+++ ...+|||||++|++.||+++++|++.||+++
T Consensus 63 ----~p~~----~g~i-----~~~~~~~~i~~~~l~~~~~~--~~~~--~~~~vitvP~~~~~~~r~~~~~a~~~aG~~~ 125 (344)
T 1jce_A 63 ----RPMR----DGVI-----ADYTVALVMLRYFINKAKGG--MNLF--KPRVVIGVPIGITDVERRAILDAGLEAGASK 125 (344)
T ss_dssp ----CCEE----TTEE-----SSHHHHHHHHHHHHHHHHTS--CCSC--CCEEEEEECTTCCHHHHHHHHHHHHHTTCSE
T ss_pred ----ecCC----CCee-----CChHHHHHHHHHHHHHHhhc--cccC--CCeEEEEECCCCCHHHHHHHHHHHHHcCCCe
Confidence 1221 1110 01113556666666555442 1233 3689999999999999999999999999999
Q ss_pred EEEechhHHHHHHhhhccCcccceEEEEEeCCceEEEEEEEEECCEEEEEEEecCCCCcchHHHHHHHHHHHHHHhhccC
Q psy15216 796 LRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKL 875 (2602)
Q Consensus 796 ~~li~EPtAAAl~y~~~~~~~~~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~~~ 875 (2602)
+.+++||+|||++|+.... .+..++|||+||||||+++++... ++ ..++..+||.+||+.|.+++.+++....
T Consensus 126 ~~li~ep~Aaa~~~~~~~~-~~~~~lVvDiGggttdvsv~~~~~----~~-~~~~~~lGG~~id~~l~~~l~~~~~~~~- 198 (344)
T 1jce_A 126 VFLIEEPMAAAIGSNLNVE-EPSGNMVVDIGGGTTEVAVISLGS----IV-TWESIRIAGDEMDEAIVQYVRETYRVAI- 198 (344)
T ss_dssp EEEEEHHHHHHHHTTCCTT-SSSCEEEEEECSSCEEEEEEETTE----EE-EEEEESCSHHHHHHHHHHHHHHHHCEEC-
T ss_pred EeccCCHHHHHHhcCCCCC-CCceEEEEEeCCCeEEEEEEEcCC----EE-eeCCCCccChhHHHHHHHHHHHHhCccc-
Confidence 9999999999999987643 467899999999999999998743 22 2456799999999999999998764332
Q ss_pred CHHHHHHHHHHHHHHHHHcccccc------eEEEEE---ecCCceEEEEeCHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q psy15216 876 SYKDVNILMIKSREIKELLSYQSS------VKLNVK---LSDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLT 946 (2602)
Q Consensus 876 ~~~~~~~l~~~~e~~K~~LS~~~~------~~~~i~---~~~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~a~~~ 946 (2602)
. +..||++|+.|+.... ..+.++ +.+|.+..++|+|++|+++++|.++++.+.|.++|++++..
T Consensus 199 ~-------~~~ae~~K~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~ 271 (344)
T 1jce_A 199 G-------ERTAERVKIEIGNVFPSKENDELETTVSGIDLSTGLPRKLTLKGGEVREALRSVVVAIVESVRTTLEKTPPE 271 (344)
T ss_dssp C-------HHHHHHHHHHHCBCSCCHHHHHCEEEEEEEETTTTEEEEEEEEHHHHHHHTHHHHHHHHHHHHHHHHTSCHH
T ss_pred C-------HHHHHHHHHHHhccCccccCCcceEEEeccccCCCCceeEEEeHHHHHHHHHHHHHHHHHHHHHHHHhCCch
Confidence 1 4679999999987642 345554 34677788999999999999999999999999999987532
Q ss_pred --cccc-ceEEEecCccchHHHHHHHHhhccCcccCcCCcchHhHHHHHHHhHHhc
Q psy15216 947 --IKDI-NNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLS 999 (2602)
Q Consensus 947 --~~~i-~~V~LvGG~sr~P~v~~~l~~~f~~~~~~~~~p~~aVa~GAa~~a~~l~ 999 (2602)
.+.+ +.|+|+||+|++|.|+++|++.|+.++..+.||++|||+||++++..++
T Consensus 272 ~~~~~~~~~IvL~GG~s~~p~l~~~l~~~~~~~v~~~~~p~~ava~Gaa~~a~~~~ 327 (344)
T 1jce_A 272 LVSDIIERGIFLTGGGSLLRGLDTLLQKETGISVIRSEEPLTAVAKGAGMVLDKVN 327 (344)
T ss_dssp HHHHHHHHCEEEESGGGCSBTHHHHHHHHHSSCEEECSSTTTHHHHHHHHGGGCHH
T ss_pred hccchhhCcEEEECccccchHHHHHHHHHHCCCccccCChHHHHHHHHHHHHhChH
Confidence 2234 7899999999999999999999998888889999999999999997544
|
| >4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-34 Score=375.46 Aligned_cols=364 Identities=41% Similarity=0.758 Sum_probs=315.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhccc
Q psy15216 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAH 80 (2602)
Q Consensus 1 Ld~a~~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~ 80 (2602)
||+++++++|+.+++++.+++...+.+|+. .+..++...+..+++++++++++|++++++++++|+|+|+.+++.++..
T Consensus 4 ld~~~~~~~~~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~~~a~~~~~~~~~~ 82 (382)
T 4hvk_A 4 FDYTSAKPVDERILEAMLPYMTESFGNPSS-VHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAIIGYAM 82 (382)
T ss_dssp CBTTTCCCCCHHHHHHHHHHHHTSCCCTTC-SSHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSHHHHHHHHHHHHHH
T ss_pred ecCCCcCCCCHHHHHHHHHHHHhhcCCCcc-cchHHHHHHHHHHHHHHHHHHHcCCCcCeEEEECCchHHHHHHHHHhhh
Confidence 799999999999999999999888888876 5667777788999999999999999888999999999999999998862
Q ss_pred ccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHH
Q psy15216 81 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGE 160 (2602)
Q Consensus 81 ~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~ 160 (2602)
...++||+|+++.++|+++...+..+++.|++++.+++++++.+|+++|++++++++++|++++++||||.+.|+++|.+
T Consensus 83 ~~~~~gd~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~ 162 (382)
T 4hvk_A 83 RNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLRDDTILVSVQHANNEIGTIQPVEEISE 162 (382)
T ss_dssp HHGGGCCEEEEETTCCHHHHHHHHHHHHTTCEEEEECBCTTSCBCHHHHHHHCCTTEEEEECCSBCTTTCBBCCHHHHHH
T ss_pred hhcCCCCEEEECCCCcHHHHHHHHHHHhcCCEEEEeccCCCCCcCHHHHHHHhccCceEEEEECCCCCceeeCCHHHHHH
Confidence 22269999999999999999998888788999999999988999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEEEecccccccccccCCCCCccEEEeccccccCCCCcEEEEEecCCCCcccceecCCCccccccccCcchhH
Q psy15216 161 LCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQ 240 (2602)
Q Consensus 161 la~~~g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K~~Gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~ 240 (2602)
+|++||+ +|+|++|+.+..++++...++|++++|+||++|++|+|+++++++. .+.+...++....++..++++...
T Consensus 163 l~~~~~~-li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 239 (382)
T 4hvk_A 163 VLAGKAA-LHIDATASVGQIEVDVEKIGADMLTISSNDIYGPKGVGALWIRKEA--KLQPVILGGGQENGLRSGSENVPS 239 (382)
T ss_dssp HHSSSSE-EEEECTTTBTTBCCCHHHHTCSEEEEESGGGTSCTTCEEEEEETTC--CCCCSSCSSCTGGGTSCSCCCHHH
T ss_pred HHHHcCE-EEEEhHHhcCCCCCCchhcCCCEEEEeHHHhcCCCceEEEEEcCcc--CcCcccccCCCcCccccCCcCHHH
Confidence 9999999 9999999999888877767889999999999999999999999875 566666677667777889999999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcccChhHHHHHh--CCeEEccc
Q psy15216 241 IVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDIAVSSG 318 (2602)
Q Consensus 241 ~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~v~~g 318 (2602)
+.++.+++++...++++..++..++++++.+.|.+ ++++++..++....++++.+.++..+..++.+.| +||.+++|
T Consensus 240 ~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g 318 (382)
T 4hvk_A 240 IVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLK-IEESYLNGHPEKRLPNNVNVRFSYIEGESIVLSLDMAGIQASTG 318 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-STTEEECSCSSSBCTTEEEEEETTCCHHHHHHHHHHTTCBCBCC
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhc-CCCeEEeCCccccCCCEEEEEECCCCHHHHHHHHHHCCEEEeeC
Confidence 99999999876778899999999999999999986 7899988776555566777777777777787777 79999999
Q ss_pred ccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 319 SACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 319 ~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
..|.+....+++.+..+|.+++...+++|++++.++|++|+++++++|++.
T Consensus 319 ~~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~t~e~i~~~~~~l~~~ 369 (382)
T 4hvk_A 319 SACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGV 369 (382)
T ss_dssp --------CCCHHHHHTTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred CccCCCCCcchHHHHHcCCChhhcCCeEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 998876666677788888876555689999999999999999999999974
|
| >1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-34 Score=368.34 Aligned_cols=310 Identities=20% Similarity=0.252 Sum_probs=241.3
Q ss_pred eEEEEEcCcccEEEEEEECCeEEEEeCCCCCccccEEEEEecC-Cc-EEecHHHHhhhccCCCCchhhhhhhcCCCCCCC
Q psy15216 2034 VSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPD-GK-IYVGKKAKITQNIDPKNTISSIKRFIARDLKNI 2111 (2602)
Q Consensus 2034 ~vvGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~~-~~-~~vG~~A~~~~~~~p~~~~~~~K~~lg~~~~~~ 2111 (2602)
.+||||||||||++++..++ .++ .+||+|+|.++ ++ .+||+.|+....++|.++...
T Consensus 4 ~~igIDlGT~~s~v~~~~~~--~~~-------~~PS~v~~~~~~~~~~~vG~~A~~~~~~~~~~~~~~------------ 62 (344)
T 1jce_A 4 KDIGIDLGTANTLVFLRGKG--IVV-------NEPSVIAIDSTTGEILKVGLEAKNMIGKTPATIKAI------------ 62 (344)
T ss_dssp CEEEEEECSSEEEEEETTTE--EEE-------EEESCEEEETTTCCEEEESHHHHTTTTCCCTTEEEE------------
T ss_pred ceEEEEcCcCcEEEEECCCC--EEE-------eeCcEEEEecCCCcEEEEcHHHHHhcccCCCCeEEE------------
Confidence 47999999999999875333 232 27999999876 44 589999999888888776421
Q ss_pred CCCCCCeeeecCCCceEEEecCceeCHHHHHHHHHHHHHHHHHHhhccccceEEEeeCCCCCHHHHHHHHHHHHHcCCce
Q psy15216 2112 NTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNV 2191 (2602)
Q Consensus 2112 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~l~~Aa~~AGl~~ 2191 (2602)
+|++ .|.+ .....++++++.+|++++.. ..++ ...+|||||++|++.||+++++|++.||+++
T Consensus 63 ----~p~~----~g~i-----~~~~~~~~i~~~~l~~~~~~--~~~~--~~~~vitvP~~~~~~~r~~~~~a~~~aG~~~ 125 (344)
T 1jce_A 63 ----RPMR----DGVI-----ADYTVALVMLRYFINKAKGG--MNLF--KPRVVIGVPIGITDVERRAILDAGLEAGASK 125 (344)
T ss_dssp ----CCEE----TTEE-----SSHHHHHHHHHHHHHHHHTS--CCSC--CCEEEEEECTTCCHHHHHHHHHHHHHTTCSE
T ss_pred ----ecCC----CCee-----CChHHHHHHHHHHHHHHhhc--cccC--CCeEEEEECCCCCHHHHHHHHHHHHHcCCCe
Confidence 1111 1110 01113566666666555442 1233 3689999999999999999999999999999
Q ss_pred eEeechhHHHHHHhhhccCCCCceEEEEEeCCceEEEEEEEEeCCEEEEEEEecCCCCchhHHHHHHHHHHHHHHhhhcC
Q psy15216 2192 LRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKL 2271 (2602)
Q Consensus 2192 ~~li~EP~AAAl~y~~~~~~~~~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~~~ 2271 (2602)
+.+++||+|||++|+.... .+..++|||+||||||+++++... ++ ..++..+||.+||+.|.+++.+++ ....
T Consensus 126 ~~li~ep~Aaa~~~~~~~~-~~~~~lVvDiGggttdvsv~~~~~----~~-~~~~~~lGG~~id~~l~~~l~~~~-~~~~ 198 (344)
T 1jce_A 126 VFLIEEPMAAAIGSNLNVE-EPSGNMVVDIGGGTTEVAVISLGS----IV-TWESIRIAGDEMDEAIVQYVRETY-RVAI 198 (344)
T ss_dssp EEEEEHHHHHHHHTTCCTT-SSSCEEEEEECSSCEEEEEEETTE----EE-EEEEESCSHHHHHHHHHHHHHHHH-CEEC
T ss_pred EeccCCHHHHHHhcCCCCC-CCceEEEEEeCCCeEEEEEEEcCC----EE-eeCCCCccChhHHHHHHHHHHHHh-Cccc
Confidence 9999999999999986543 456899999999999999998753 22 345689999999999999998763 2112
Q ss_pred ChhHHHHHHHHHHHHHHHhcccce------EEEEEE---ecCCceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q psy15216 2272 SYKDVNILMIKSREIKELLSYQSS------VKLNVK---LSDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLT 2342 (2602)
Q Consensus 2272 ~~~~~~~l~~~~e~~K~~ls~~~~------~~~~i~---~~~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~~~~~ 2342 (2602)
. ...+|++|+.++.... ..+.++ +.++.+..++|+|++|+++++|.++++.+.|.++|++++.+
T Consensus 199 ~-------~~~ae~~K~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~ 271 (344)
T 1jce_A 199 G-------ERTAERVKIEIGNVFPSKENDELETTVSGIDLSTGLPRKLTLKGGEVREALRSVVVAIVESVRTTLEKTPPE 271 (344)
T ss_dssp C-------HHHHHHHHHHHCBCSCCHHHHHCEEEEEEEETTTTEEEEEEEEHHHHHHHTHHHHHHHHHHHHHHHHTSCHH
T ss_pred C-------HHHHHHHHHHHhccCccccCCcceEEEeccccCCCCceeEEEeHHHHHHHHHHHHHHHHHHHHHHHHhCCch
Confidence 1 4679999999987642 345544 33666678999999999999999999999999999988543
Q ss_pred --cccc-ceEEEEeCccchHHHHHHHHhhcCCcccCCCCccchhhhHHHHHhHHhc
Q psy15216 2343 --IKDI-NNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLS 2395 (2602)
Q Consensus 2343 --~~~i-~~V~LvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~aVa~GAa~~a~~~~ 2395 (2602)
.+.+ +.|+|+||+|++|.|+++|++.|+.++..+.||+++||+||++++..++
T Consensus 272 ~~~~~~~~~IvL~GG~s~~p~l~~~l~~~~~~~v~~~~~p~~ava~Gaa~~a~~~~ 327 (344)
T 1jce_A 272 LVSDIIERGIFLTGGGSLLRGLDTLLQKETGISVIRSEEPLTAVAKGAGMVLDKVN 327 (344)
T ss_dssp HHHHHHHHCEEEESGGGCSBTHHHHHHHHHSSCEEECSSTTTHHHHHHHHGGGCHH
T ss_pred hccchhhCcEEEECccccchHHHHHHHHHHCCCccccCChHHHHHHHHHHHHhChH
Confidence 2234 6899999999999999999999999888889999999999999997543
|
| >4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-33 Score=364.21 Aligned_cols=364 Identities=41% Similarity=0.759 Sum_probs=304.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhccc
Q psy15216 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAH 80 (2602)
Q Consensus 1 Ld~a~~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~ 80 (2602)
||+++++++|+.+++++.+.+...+++|+. .|..+....+..+++++++++++|++++++++|+|+|+|+++++.++..
T Consensus 4 ld~~~~~~~~~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~l~~ 82 (382)
T 4eb5_A 4 FDYTSAKPVDERILEAMLPYMTESFGNPSS-VHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAIIGYAM 82 (382)
T ss_dssp CBTTTCCCCCHHHHHHHHHHHHTSCCCTTC-SSHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEESSHHHHHHHHHHHHHH
T ss_pred eccCCCCCCCHHHHHHHHHHHHhccCCCCC-CcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEcCchHHHHHHHHHHHHh
Confidence 799999999999999999999876677765 4555556677899999999999999888999999999999999998752
Q ss_pred ccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHH
Q psy15216 81 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGE 160 (2602)
Q Consensus 81 ~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~ 160 (2602)
...++||+|++++++|+++...+..++..|++++.+++++++.+|+++|++++++++++|++++++||||.++|+++|.+
T Consensus 83 ~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~ 162 (382)
T 4eb5_A 83 RNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLRDDTILVSVQHANNEIGTIQPVEEISE 162 (382)
T ss_dssp HHGGGCCEEEEETTCCHHHHHHHHHHTTTTCEEEEECBCTTSCBCHHHHHHHCCTTEEEEECCSBCTTTCBBCCHHHHHH
T ss_pred hccCCCCEEEECCCcchHHHHHHHHHHhCCcEEEEeccCCCCccCHHHHHHHhcCCCeEEEEeccCCCccccCCHHHHHH
Confidence 21268999999999999998888877667999999999888889999999999999999999999999999999999999
Q ss_pred HHHhcCCEEEEecccccccccccCCCCCccEEEeccccccCCCCcEEEEEecCCCCcccceecCCCccccccccCcchhH
Q psy15216 161 LCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQ 240 (2602)
Q Consensus 161 la~~~g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K~~Gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~ 240 (2602)
+|++||++ |+|++|++|..++++..+++|++++|+||++||+|+|+++++++. .+.+...+++....+..++++...
T Consensus 163 l~~~~~~~-i~D~a~~~g~~~~~~~~~~~di~~~s~sK~~g~~g~G~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~ 239 (382)
T 4eb5_A 163 VLAGKAAL-HIDATASVGQIEVDVEKIGADMLTISSNDIYGPKGVGALWIRKEA--KLQPVILGGGQENGLRSGSENVPS 239 (382)
T ss_dssp HHTTSSEE-EEECTTTBTTBCCCHHHHTCSEEEEETGGGTCCSSCEEEEEETTC--CCCCSSCSSCTGGGTSCSCCCHHH
T ss_pred HHHHCCCE-EEEcchhcCCcccCccccCCCEEEeehHHhcCCCceEEEEEcccc--ccCceecCCCccccccCCCccHHH
Confidence 99999999 999999988777666556789999999999999999999999864 344444444344456678889888
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcccChhHHHHHh--CCeEEccc
Q psy15216 241 IVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDIAVSSG 318 (2602)
Q Consensus 241 ~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~v~~g 318 (2602)
+.++.++++....++++..++..++++++.+.|.+ ++++++..++....+..+.+.++..+..++.+.| +||.+++|
T Consensus 240 ~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g 318 (382)
T 4eb5_A 240 IVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLK-IEESYLNGHPEKRLPNNVNVRFSYIEGESIVLSLDMAGIQASTG 318 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-STTEEECSCSSSBCTTEEEEEETTSCHHHHHHHHHHHTCBCBCC
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhh-CCCeEEeCCcccCCCCEEEEEeCCcCHHHHHHHHHHCCEEEecc
Confidence 88888899876667889999999999999999987 7888887654333345566677766677777777 79999999
Q ss_pred ccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 319 SACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 319 ~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
..|.+....+++.+..+|.++....+++||+++.+++++|+++++++|++.
T Consensus 319 ~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 369 (382)
T 4eb5_A 319 SACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGV 369 (382)
T ss_dssp CGGGTSSCCCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred ccccCCCCcccHHHHHcCCChhccCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 888776556667777788753334589999999999999999999999964
|
| >3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-33 Score=367.83 Aligned_cols=368 Identities=67% Similarity=1.110 Sum_probs=321.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHh--hhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhc
Q psy15216 1 MDYSATTPIDPRVVDKMIPYLR--VQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGA 78 (2602)
Q Consensus 1 Ld~a~~~~~p~~v~~a~~~~l~--~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l 78 (2602)
||+++.+++|+.+++++.+.+. ..+++|+.+.+..++...+..+++++++++++|+++++|++++|+|+|+++++.++
T Consensus 26 ld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~ggt~a~~~a~~~l 105 (423)
T 3lvm_A 26 LDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSGATESDNLAIKGA 105 (423)
T ss_dssp CBTTTCCCCCHHHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHH
T ss_pred ecCCCcCCCCHHHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcCCCCCeEEEeCChHHHHHHHHHHH
Confidence 7899999999999999999888 67778876456677777889999999999999998889999999999999999988
Q ss_pred ccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHH
Q psy15216 79 AHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEI 158 (2602)
Q Consensus 79 ~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I 158 (2602)
.....++||+|+++.++|+++...+..++..|++++.++.++++.+|+++|++++++++++|++++++||||.++|+++|
T Consensus 106 ~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i 185 (423)
T 3lvm_A 106 ANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAI 185 (423)
T ss_dssp HHHHTTTCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCTTSCCCHHHHHHHCCTTEEEEECCSBCTTTCBBCCHHHH
T ss_pred HHhhccCCCEEEECCccchHHHHHHHHHHHcCCEEEEeccCCCCccCHHHHHHhcCCCcEEEEEeCCCCCCccccCHHHH
Confidence 73222479999999999999988887777789999999999889999999999999999999999999999999999999
Q ss_pred HHHHHhcCCEEEEecccccccccccCCCCCccEEEeccccccCCCCcEEEEEecCCCCcccceecCCCccccccccCcch
Q psy15216 159 GELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLAT 238 (2602)
Q Consensus 159 ~~la~~~g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K~~Gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~ 238 (2602)
.++|++||+++|+|++|+.+..++++..+++|++++|+||++|+.|+|+++++++....+.+...+++....+..++++.
T Consensus 186 ~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~di~~~s~sK~~g~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (423)
T 3lvm_A 186 GEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKIYGPKGIGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPV 265 (423)
T ss_dssp HHHHHHHTCEEEEECTTTTTTSCCCTTTSCCSEEEEESTTTTSCSSCEEEEECBTTBCCCCCSSCSSCTTTTTCCSCCCH
T ss_pred HHHHHHcCCEEEEEhhhhcCCCCcChhhcCCCEEEechHHhcCCCCeEEEEEeccccCCCCccccCCcccccccCCCCCH
Confidence 99999999999999999999888888888899999999999999999999999998888888777766666677889999
Q ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcccChhHHHHHhCCeEEccc
Q psy15216 239 HQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIKDIAVSSG 318 (2602)
Q Consensus 239 ~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~gI~v~~g 318 (2602)
..++++.++++.....+++..++..++++++.+.|.+ ++++++..++....+.++.+.++..+..++...|..|.+++|
T Consensus 266 ~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~i~v~~g 344 (423)
T 3lvm_A 266 HQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIKD-IEEVYLNGDLEHGAPNILNVSFNYVEGESLIMALKDLAVSSG 344 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-STTEEEESCSTTBCTTEEEEEETTSCHHHHHHHTTTEECBCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCEEEeCCccccCCCeEEEEeCCCCHHHHHHHHhhheeccC
Confidence 9999998999876666889999999999999999977 789999877665556777788877778888888855999999
Q ss_pred ccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 319 SACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 319 ~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
..|.+...++++.+..+|+.+....+++||+++.+++++|+++++++|++.
T Consensus 345 ~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~ 395 (423)
T 3lvm_A 345 SACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKS 395 (423)
T ss_dssp CC-----CCCCHHHHHHTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred ccccCCCccccHHHHHhCCCccccCceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 999887677778888888876555689999999999999999999999974
|
| >4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-33 Score=361.80 Aligned_cols=365 Identities=41% Similarity=0.744 Sum_probs=311.1
Q ss_pred eeccC-CCCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhh
Q psy15216 1396 IVFKD-ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGA 1474 (2602)
Q Consensus 1396 v~L~~-~~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l 1474 (2602)
+|||. ...+.++.+.+++.+.+...+++|+. .|..++......+++++++++++|++++++++|+|+|+|+.+++.++
T Consensus 2 iyld~~~~~~~~~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~~~a~~~~~~~~ 80 (382)
T 4hvk_A 2 AYFDYTSAKPVDERILEAMLPYMTESFGNPSS-VHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAIIGY 80 (382)
T ss_dssp CBCBTTTCCCCCHHHHHHHHHHHHTSCCCTTC-SSHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSHHHHHHHHHHHH
T ss_pred EeecCCCcCCCCHHHHHHHHHHHHhhcCCCcc-cchHHHHHHHHHHHHHHHHHHHcCCCcCeEEEECCchHHHHHHHHHh
Confidence 57764 44688899999999999888888886 57777788889999999999999998889999999999999999988
Q ss_pred hhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccCCceEEEEeccccccccccChHHH
Q psy15216 1475 AHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEI 1554 (2602)
Q Consensus 1475 ~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I 1554 (2602)
.....++||+|++++++|+++...+..+...|++++.++.++++.+|+++|+++++++|++|++++++||||.+.|+++|
T Consensus 81 ~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i 160 (382)
T 4hvk_A 81 AMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLRDDTILVSVQHANNEIGTIQPVEEI 160 (382)
T ss_dssp HHHHGGGCCEEEEETTCCHHHHHHHHHHHHTTCEEEEECBCTTSCBCHHHHHHHCCTTEEEEECCSBCTTTCBBCCHHHH
T ss_pred hhhhcCCCCEEEECCCCcHHHHHHHHHHHhcCCEEEEeccCCCCCcCHHHHHHHhccCceEEEEECCCCCceeeCCHHHH
Confidence 62222799999999999999999888887789999999999888999999999999999999999999999999999999
Q ss_pred HHHhhhcCCEEEEecccccCcccccCCCCCccEEEEccccccCCCceEEEEEecCCCCccccccccCCccccCCCCCcch
Q psy15216 1555 GELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLAT 1634 (2602)
Q Consensus 1555 ~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K~~gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~ 1634 (2602)
.++|++||+ +|+|++|+.|..++++..+++|++++|+||++||.|+|+++++++. .+.+...++....++..++++.
T Consensus 161 ~~l~~~~~~-li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 237 (382)
T 4hvk_A 161 SEVLAGKAA-LHIDATASVGQIEVDVEKIGADMLTISSNDIYGPKGVGALWIRKEA--KLQPVILGGGQENGLRSGSENV 237 (382)
T ss_dssp HHHHSSSSE-EEEECTTTBTTBCCCHHHHTCSEEEEESGGGTSCTTCEEEEEETTC--CCCCSSCSSCTGGGTSCSCCCH
T ss_pred HHHHHHcCE-EEEEhHHhcCCCCCCchhcCCCEEEEeHHHhcCCCceEEEEEcCcc--CcCcccccCCCcCccccCCcCH
Confidence 999999999 9999999999887777767889999999999999999999999875 5666666776677788899999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecCCcHHHHHhc--CCEEEc
Q psy15216 1635 HQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDIAVS 1712 (2602)
Q Consensus 1635 ~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~v~ 1712 (2602)
..+.++.+++.+...++++..++..++++++.+.|.+ ++++.+..++....++...+.++..+..++...| +||.++
T Consensus 238 ~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~ 316 (382)
T 4hvk_A 238 PSIVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLK-IEESYLNGHPEKRLPNNVNVRFSYIEGESIVLSLDMAGIQAS 316 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-STTEEECSCSSSBCTTEEEEEETTCCHHHHHHHHHHTTCBCB
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhc-CCCeEEeCCccccCCCEEEEEECCCCHHHHHHHHHHCCEEEe
Confidence 9999999999877778899999999999999999986 7899988766555566777777766777777766 899999
Q ss_pred cccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1713 SGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1713 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
+|..|......+++....++.++....+++||+++.++|.+|+++++++|++.
T Consensus 317 ~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~t~e~i~~~~~~l~~~ 369 (382)
T 4hvk_A 317 TGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGV 369 (382)
T ss_dssp CC--------CCCHHHHHTTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred eCCccCCCCCcchHHHHHcCCChhhcCCeEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 99988776555667777788765545689999999999999999999999973
|
| >1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-32 Score=355.80 Aligned_cols=364 Identities=40% Similarity=0.636 Sum_probs=295.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhccc
Q psy15216 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAH 80 (2602)
Q Consensus 1 Ld~a~~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~ 80 (2602)
||+++++++|+.+.+++.+.+...+.+|+. .+.+++......+++++++++++|+++++|++++|+|+|+++++.++..
T Consensus 5 ld~~~~~~~~~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~~ 83 (384)
T 1eg5_A 5 FDNNATTRVDDRVLEEMIVFYREKYGNPNS-AHGMGIEANLHMEKAREKVAKVLGVSPSEIFFTSCATESINWILKTVAE 83 (384)
T ss_dssp CBTTTCCCCCHHHHHHHHHHHHTCCCCTTC-SSHHHHHHHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHHHHHHHHH
T ss_pred EecCccCCCCHHHHHHHHHHHHhcCCCCcc-ccHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHHhhhh
Confidence 799999999999999999999876667765 4566677778899999999999999888999999999999999999861
Q ss_pred ccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHH
Q psy15216 81 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGE 160 (2602)
Q Consensus 81 ~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~ 160 (2602)
..+++||+|+++.++|+++...+..++..|++++.++.++++.+|+++|++++++++++|++++++||||.++|+++|.+
T Consensus 84 ~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~ 163 (384)
T 1eg5_A 84 TFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVDEDTFLVSIMAANNEVGTIQPVEDVTR 163 (384)
T ss_dssp HTTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCCTTEEEEEEESBCTTTCBBCCHHHHHH
T ss_pred hccCCCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccCCCCccCHHHHHHHhCCCCeEEEEECCCCCcccccCHHHHHH
Confidence 11258999999999999998888766667999999999888889999999999999999999999999999999999999
Q ss_pred HHHhcC--CEEEEecccccccccccCCCCCccEEEeccccccCCCCcEEEEEecCCCCcccceecCCCccccccccCcch
Q psy15216 161 LCRSKG--VIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLAT 238 (2602)
Q Consensus 161 la~~~g--~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K~~Gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~ 238 (2602)
+|++|| +++|+|++|+++..++++..+++|++++|+||++||+|+|++++++++ .+.+.+.++.....+..++++.
T Consensus 164 l~~~~~~~~~li~Dea~~~~~~~~~~~~~~~di~~~s~sK~~g~~G~G~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 241 (384)
T 1eg5_A 164 IVKKKNKETLVHVDAVQTIGKIPFSLEKLEVDYASFSAHKFHGPKGVGITYIRKGV--PIRPLIHGGGQERGLRSGTQNV 241 (384)
T ss_dssp HHHHHCTTCEEEEECTTTTTTSCCCCTTTCCSEEEEEGGGGTSCTTCEEEEECTTS--CCCCSBCSSCTTTTTBCSCCCH
T ss_pred HHHhcCCceEEEEEhhhhcCCcccCchhcCCCEEEecHHHhcCCCceEEEEEcCCC--ccccccccCcccccccCCCCCh
Confidence 999999 999999999988777777777899999999999999999999999875 3344443333333445678898
Q ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcccChhHHHHHh--CCeEEc
Q psy15216 239 HQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDIAVS 316 (2602)
Q Consensus 239 ~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~v~ 316 (2602)
..+.++.++++....++++..+++.++++++.+.|.+ +++++..++....+..+.+.++..+..++.+.| +||.++
T Consensus 242 ~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~ 319 (384)
T 1eg5_A 242 PGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMN--LGAHIITPLEISLPNTLSVSFPNIRGSTLQNLLSGYGIYVS 319 (384)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHT--TTCEECSCTTSBCTTEEEEECTTCCHHHHHHHHHHTTEECB
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCC--CCeEEeCCcccCCCCEEEEEeCCCCHHHHHHHHhhCCeEEe
Confidence 8888888899865567889999999999999999987 688887654433455667777666677777777 799999
Q ss_pred ccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 317 SGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 317 ~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
+|..|.+....+.+.+..+|.++....+++||+++.+++++|+++++++|++.
T Consensus 320 ~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 372 (384)
T 1eg5_A 320 TSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIEEI 372 (384)
T ss_dssp C------------CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred ccccccCCCCcchHHHHHcCCChhhcCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 99877654334455566667653223478999999999999999999999964
|
| >3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-32 Score=355.54 Aligned_cols=372 Identities=65% Similarity=1.081 Sum_probs=319.9
Q ss_pred ceeeeccC-CCCCCCHHHHHHHHHHHh--hccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHH
Q psy15216 1393 YTNIVFKD-ATTPIDPRVVDKMIPYLR--VQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNL 1469 (2602)
Q Consensus 1393 ~~~v~L~~-~~~~~~~~v~eal~~~l~--~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~ 1469 (2602)
...+||+. +..+.++.+++++.+.+. ..+++|+.+.+..++.......++++++++++++++++|++|+|+|+|+.+
T Consensus 21 ~~~iyld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~ggt~a~~~ 100 (423)
T 3lvm_A 21 KLPIYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSGATESDNL 100 (423)
T ss_dssp CSSEECBTTTCCCCCHHHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESSHHHHHHH
T ss_pred CCCEeecCCCcCCCCHHHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcCCCCCeEEEeCChHHHHHH
Confidence 45678874 446888999999999988 677888765677778888899999999999999988899999999999999
Q ss_pred HHHhhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccCCceEEEEecccccccccc
Q psy15216 1470 AIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQ 1549 (2602)
Q Consensus 1470 al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~ 1549 (2602)
++.++.....++||+|+++.++|+++...+..+...|++++.++.++++.+|+++|++++++++++|++++++||||.++
T Consensus 101 a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~ 180 (423)
T 3lvm_A 101 AIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQ 180 (423)
T ss_dssp HHHHHHHHHTTTCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCTTSCCCHHHHHHHCCTTEEEEECCSBCTTTCBBC
T ss_pred HHHHHHHhhccCCCEEEECCccchHHHHHHHHHHHcCCEEEEeccCCCCccCHHHHHHhcCCCcEEEEEeCCCCCCcccc
Confidence 99988732224799999999999999888877777799999999998888999999999999999999999999999999
Q ss_pred ChHHHHHHhhhcCCEEEEecccccCcccccCCCCCccEEEEccccccCCCceEEEEEecCCCCccccccccCCccccCCC
Q psy15216 1550 PILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRS 1629 (2602)
Q Consensus 1550 ~l~~I~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K~~gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~ 1629 (2602)
|+++|.++|++||+++|+|++|+.+..++++..+++|++++|+||++|+.|+|+++++++....+.+...++.....+..
T Consensus 181 ~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~di~~~s~sK~~g~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (423)
T 3lvm_A 181 DIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKIYGPKGIGALYVRRKPRVRIEAQMHGGGHERGMRS 260 (423)
T ss_dssp CHHHHHHHHHHHTCEEEEECTTTTTTSCCCTTTSCCSEEEEESTTTTSCSSCEEEEECBTTBCCCCCSSCSSCTTTTTCC
T ss_pred CHHHHHHHHHHcCCEEEEEhhhhcCCCCcChhhcCCCEEEechHHhcCCCCeEEEEEeccccCCCCccccCCcccccccC
Confidence 99999999999999999999999998888888888999999999999999999999999888888887777766666778
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecCCcHHHHHhcCCE
Q psy15216 1630 GTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIKDI 1709 (2602)
Q Consensus 1630 gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~L~gI 1709 (2602)
++++...+.++.++++.....+++..++..++++++.+.|.+ ++++.+..++....+.+..+.++..+...+...|..|
T Consensus 261 ~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~i 339 (423)
T 3lvm_A 261 GTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIKD-IEEVYLNGDLEHGAPNILNVSFNYVEGESLIMALKDL 339 (423)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-STTEEEESCSTTBCTTEEEEEETTSCHHHHHHHTTTE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCEEEeCCccccCCCeEEEEeCCCCHHHHHHHHhhh
Confidence 899999999998999876666889999999999999999977 7899998766655667777888767777888888559
Q ss_pred EEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1710 AVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1710 ~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
.+++|..|.+....+.+....++.......+++||+++..+|.+|+++++++|++.
T Consensus 340 ~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~ 395 (423)
T 3lvm_A 340 AVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKS 395 (423)
T ss_dssp ECBCCCC-----CCCCHHHHHHTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred eeccCccccCCCccccHHHHHhCCCccccCceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 99999988876566677777888775555689999999999999999999999974
|
| >4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-32 Score=351.13 Aligned_cols=365 Identities=41% Similarity=0.745 Sum_probs=300.1
Q ss_pred eeccC-CCCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhh
Q psy15216 1396 IVFKD-ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGA 1474 (2602)
Q Consensus 1396 v~L~~-~~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l 1474 (2602)
+|||. +..+.++.+++++.+.+...+++|++ .|..+........++|+++++++|++++++++|+|+|+|+++++.++
T Consensus 2 ~yld~~~~~~~~~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~l 80 (382)
T 4eb5_A 2 AYFDYTSAKPVDERILEAMLPYMTESFGNPSS-VHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAIIGY 80 (382)
T ss_dssp CBCBTTTCCCCCHHHHHHHHHHHHTSCCCTTC-SSHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEESSHHHHHHHHHHHH
T ss_pred eeeccCCCCCCCHHHHHHHHHHHHhccCCCCC-CcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEcCchHHHHHHHHHHH
Confidence 57764 44688999999999999876677775 46666667788999999999999998889999999999999999988
Q ss_pred hhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccCCceEEEEeccccccccccChHHH
Q psy15216 1475 AHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEI 1554 (2602)
Q Consensus 1475 ~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I 1554 (2602)
.....++||+|++++++|+++...+..+...|++++.++.++++.+|+++|++++++++++|++++++||||.++|+++|
T Consensus 81 ~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i 160 (382)
T 4eb5_A 81 AMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLRDDTILVSVQHANNEIGTIQPVEEI 160 (382)
T ss_dssp HHHHGGGCCEEEEETTCCHHHHHHHHHHTTTTCEEEEECBCTTSCBCHHHHHHHCCTTEEEEECCSBCTTTCBBCCHHHH
T ss_pred HhhccCCCCEEEECCCcchHHHHHHHHHHhCCcEEEEeccCCCCccCHHHHHHHhcCCCeEEEEeccCCCccccCCHHHH
Confidence 52222689999999999999988887766679999999998888899999999999999999999999999999999999
Q ss_pred HHHhhhcCCEEEEecccccCcccccCCCCCccEEEEccccccCCCceEEEEEecCCCCccccccccCCccccCCCCCcch
Q psy15216 1555 GELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLAT 1634 (2602)
Q Consensus 1555 ~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K~~gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~ 1634 (2602)
.++|++||++ |+|++|++|..++++..+++|++++|+||++||+|+|+++++++. .+.+...++.....+..++++.
T Consensus 161 ~~l~~~~~~~-i~D~a~~~g~~~~~~~~~~~di~~~s~sK~~g~~g~G~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~ 237 (382)
T 4eb5_A 161 SEVLAGKAAL-HIDATASVGQIEVDVEKIGADMLTISSNDIYGPKGVGALWIRKEA--KLQPVILGGGQENGLRSGSENV 237 (382)
T ss_dssp HHHHTTSSEE-EEECTTTBTTBCCCHHHHTCSEEEEETGGGTCCSSCEEEEEETTC--CCCCSSCSSCTGGGTSCSCCCH
T ss_pred HHHHHHCCCE-EEEcchhcCCcccCccccCCCEEEeehHHhcCCCceEEEEEcccc--ccCceecCCCccccccCCCccH
Confidence 9999999999 999999988776666556789999999999999999999999864 3444444443444566788888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecCCcHHHHHhc--CCEEEc
Q psy15216 1635 HQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDIAVS 1712 (2602)
Q Consensus 1635 ~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~v~ 1712 (2602)
..+.++.++++....++++..+++.++++++.+.|.+ ++++.+..+.....+....+.+++.+..++...| +||.++
T Consensus 238 ~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~ 316 (382)
T 4eb5_A 238 PSIVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLK-IEESYLNGHPEKRLPNNVNVRFSYIEGESIVLSLDMAGIQAS 316 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-STTEEECSCSSSBCTTEEEEEETTSCHHHHHHHHHHHTCBCB
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhh-CCCeEEeCCcccCCCCEEEEEeCCcCHHHHHHHHHHCCEEEe
Confidence 8888888899876667888999999999999999987 7888887654333345556666655666777666 799999
Q ss_pred cccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1713 SGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1713 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
+|..|......+++....+|.++....+++||+++.++|.+|+++++++|++.
T Consensus 317 ~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 369 (382)
T 4eb5_A 317 TGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGV 369 (382)
T ss_dssp CCCGGGTSSCCCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred ccccccCCCCcccHHHHHcCCChhccCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 99887665444556666677653334589999999999999999999999973
|
| >3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-33 Score=362.52 Aligned_cols=365 Identities=40% Similarity=0.628 Sum_probs=297.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhccc
Q psy15216 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAH 80 (2602)
Q Consensus 1 Ld~a~~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~ 80 (2602)
||+++++++|+.+++++.+.+...+.+|+. .+.+++...+..+++++++++++|+++++|++++|+|+|+++++.++..
T Consensus 24 ld~~~~~~~~~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~g~t~al~~~~~~l~~ 102 (400)
T 3vax_A 24 LDAAATTRVDQRVADIVLHWMTAEFGNAGS-RHEYGIRAKRGVERAREYLASTVSAEPDELIFTSGATESNNIALLGLAP 102 (400)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHHHSCSSC-HHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEESCHHHHHHHHHHTTHH
T ss_pred ecCCCCCCCCHHHHHHHHHHHHhccCCCcc-cchhHHHHHHHHHHHHHHHHHHcCCCCCcEEEeCCHHHHHHHHHHHHHH
Confidence 799999999999999999999887778875 4556666678899999999999999888999999999999999998852
Q ss_pred ccccCCC-EEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHH
Q psy15216 81 FYKKRGK-HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIG 159 (2602)
Q Consensus 81 ~~~~~gd-~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~ 159 (2602)
...++|| +|+++.++|+++...+..+++.|++++.+++++++.+|+++|++++++++++|++++++||||.+.|+++|.
T Consensus 103 ~~~~~gd~~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~ 182 (400)
T 3vax_A 103 YGERTGRRHIITSAIEHKAVLEPLEHLAGRGFEVDFLTPGPSGRISVEGVMERLRPDTLLVSLMHVNNETGVIQPVAELA 182 (400)
T ss_dssp HHHHHTCCEEEEETTSCHHHHHHHHHHHTTTCEEEEECCCTTCCCCHHHHHTTCCTTEEEEECCSBCTTTCBBCCHHHHH
T ss_pred hhccCCCCEEEECccccHhHHHHHHHHHhcCCeEEEEccCCCCCcCHHHHHHhcCCCceEEEEECCCCCceeeCcHHHHH
Confidence 2225899 999999999999998888877899999999988899999999999999999999999999999999999999
Q ss_pred HHHHhcCCEEEEecccccccccccCCCCCccEEEeccccccCCCCcEEEE-EecCCC----CcccceecCCCcccccccc
Q psy15216 160 ELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALY-IRRNPR----TRIEAQIHGGGHEYGLRSG 234 (2602)
Q Consensus 160 ~la~~~g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K~~Gp~G~G~l~-~~~~~~----~~l~~~~~g~~~~~~~~~g 234 (2602)
++|++||+++|+|++|+.+..++++..+ +|++++|+||++|+.|+|+++ ++++.. ..+.+...++.....+..+
T Consensus 183 ~la~~~~~~li~D~a~~~~~~~~~~~~~-~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (400)
T 3vax_A 183 QQLRATPTYLHVDAAQGYGKVPGDLTTP-IDMISISGHKIGAPKGVGALVTRRREEMDDERVPLEPIMFGGGQERKLRPG 261 (400)
T ss_dssp HHHTTSSCEEEEECTTTTTTSGGGGGSC-CSEEEEETGGGTSCSSCEEEEECBCSSSTTCBCCCCCSSCSSCTGGGTSCS
T ss_pred HHHHhcCCEEEEEhhhhcCCCCcChhhc-CcEEEEeHHHhCCCCceEEEEEecchhccccccccCceecCCCceeeeecC
Confidence 9999999999999999999888887777 899999999999999999999 887322 3456666565556667788
Q ss_pred CcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcccChhHHHHHh-CCe
Q psy15216 235 TLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI-KDI 313 (2602)
Q Consensus 235 t~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L-~gI 313 (2602)
+++..+++++.++++....++++..+++.++++++.+.|. .+++++..++....+.++.+.++..+..++.+.| +||
T Consensus 262 ~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~gi 339 (400)
T 3vax_A 262 TLPVPLIMGLAEAAKIFEAEHAQWQVAAQDLRSRLLAGLA--STSFQVNGDQDHVVPHILNLSFEDVDAEAFLVTLKDLV 339 (400)
T ss_dssp CCCHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHT--TTTCEECSCTTSBCTTEEEEECTTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhC--CCCEEEeCCcccCCCCEEEEEeCCCCHHHHHHHHhcCc
Confidence 9999999999899987777889999999999999999997 5899988766544556667777766666666655 789
Q ss_pred EEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEec-CCCCCHHHHHHHHHHHHhh
Q psy15216 314 AVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTI-GRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 314 ~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~-~~~~t~edid~li~~L~~~ 369 (2602)
.+++|..|.+....+++.+..+|.++....+++||++ +.+++++|+++++++|++.
T Consensus 340 ~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~ 396 (400)
T 3vax_A 340 AVATGSASTSASFTPSHVLRAMGLPEEAASKSLRFSWTPGQATDLDVEELARGVAKL 396 (400)
T ss_dssp HHTTTTEEEEEEECCHHHHHTTTCCHHHHTSEEEEEEEEC-----------------
T ss_pred EEEecccccCCCCCccHHHHHcCCCccccCceEEEEccCCCCCHHHHHHHHHHHHHH
Confidence 9999988876555667777888887655568999999 9999999999999999863
|
| >1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-31 Score=342.47 Aligned_cols=365 Identities=40% Similarity=0.640 Sum_probs=291.6
Q ss_pred eeccC-CCCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhh
Q psy15216 1396 IVFKD-ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGA 1474 (2602)
Q Consensus 1396 v~L~~-~~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l 1474 (2602)
+|||. +..+.++.+.+++.+.++..+++|+. .+.+++.......++++++++++|++++++++|+|+|+|++.++.++
T Consensus 3 ~yld~~~~~~~~~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~ 81 (384)
T 1eg5_A 3 VYFDNNATTRVDDRVLEEMIVFYREKYGNPNS-AHGMGIEANLHMEKAREKVAKVLGVSPSEIFFTSCATESINWILKTV 81 (384)
T ss_dssp EECBTTTCCCCCHHHHHHHHHHHHTCCCCTTC-SSHHHHHHHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHHHHHHH
T ss_pred EEEecCccCCCCHHHHHHHHHHHHhcCCCCcc-ccHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHHhh
Confidence 67764 44578899999999999876677765 56667777888999999999999998889999999999999999998
Q ss_pred hhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccCCceEEEEeccccccccccChHHH
Q psy15216 1475 AHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEI 1554 (2602)
Q Consensus 1475 ~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I 1554 (2602)
....+++||+|++++++|+++...+..+...|++++.++.++++.+|+++|++++++++++|++++++||||.++|+++|
T Consensus 82 ~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i 161 (384)
T 1eg5_A 82 AETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVDEDTFLVSIMAANNEVGTIQPVEDV 161 (384)
T ss_dssp HHHTTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCCTTEEEEEEESBCTTTCBBCCHHHH
T ss_pred hhhccCCCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccCCCCccCHHHHHHHhCCCCeEEEEECCCCCcccccCHHHH
Confidence 62112689999999999999888886666679999999998888899999999999999999999999999999999999
Q ss_pred HHHhhhcC--CEEEEecccccCcccccCCCCCccEEEEccccccCCCceEEEEEecCCCCccccccccCCccccCCCCCc
Q psy15216 1555 GELCRSKG--VIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTL 1632 (2602)
Q Consensus 1555 ~~ia~~~g--i~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K~~gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~ 1632 (2602)
.++|++|| +++|+|++|++|..++++..+++|++++|+||++||+|+|++++++++ .+.+.+.++.....+..+++
T Consensus 162 ~~l~~~~~~~~~li~Dea~~~~~~~~~~~~~~~di~~~s~sK~~g~~G~G~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 239 (384)
T 1eg5_A 162 TRIVKKKNKETLVHVDAVQTIGKIPFSLEKLEVDYASFSAHKFHGPKGVGITYIRKGV--PIRPLIHGGGQERGLRSGTQ 239 (384)
T ss_dssp HHHHHHHCTTCEEEEECTTTTTTSCCCCTTTCCSEEEEEGGGGTSCTTCEEEEECTTS--CCCCSBCSSCTTTTTBCSCC
T ss_pred HHHHHhcCCceEEEEEhhhhcCCcccCchhcCCCEEEecHHHhcCCCceEEEEEcCCC--ccccccccCcccccccCCCC
Confidence 99999999 999999999988777777777899999999999999999999999875 33433333333234556788
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecCCcHHHHHhc--CCEE
Q psy15216 1633 ATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDIA 1710 (2602)
Q Consensus 1633 ~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~ 1710 (2602)
+...+.++.++|+....++++..+++.++++++.+.|.+ +++.+..++....+....+.++..+..++...| +||.
T Consensus 240 ~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~ 317 (384)
T 1eg5_A 240 NVPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMN--LGAHIITPLEISLPNTLSVSFPNIRGSTLQNLLSGYGIY 317 (384)
T ss_dssp CHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHT--TTCEECSCTTSBCTTEEEEECTTCCHHHHHHHHHHTTEE
T ss_pred ChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCC--CCeEEeCCcccCCCCEEEEEeCCCCHHHHHHHHhhCCeE
Confidence 888888888888865567888999999999999999987 688877654443456677777655666777666 8999
Q ss_pred EccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1711 VSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1711 v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
+++|..|......+.+.+..++.++....+++||+++.++|.+|+++++++|++.
T Consensus 318 v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 372 (384)
T 1eg5_A 318 VSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIEEI 372 (384)
T ss_dssp CBC------------CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred EeccccccCCCCcchHHHHHcCCChhhcCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 9999877653223344555566542223479999999999999999999999973
|
| >3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-32 Score=354.22 Aligned_cols=375 Identities=40% Similarity=0.618 Sum_probs=293.9
Q ss_pred cceeeeeceeeeccC-CCCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHH
Q psy15216 1386 SGIVMRPYTNIVFKD-ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGAT 1464 (2602)
Q Consensus 1386 ~ei~~iP~~~v~L~~-~~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT 1464 (2602)
....+.++..+||+. +..+.++.+.+++.+.+...+++|+. .+..++.......++++++++++|+++++|++|+|+|
T Consensus 12 ~~~~~~~~~~iyld~~~~~~~~~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~g~t 90 (400)
T 3vax_A 12 SGLVPRGSHMTYLDAAATTRVDQRVADIVLHWMTAEFGNAGS-RHEYGIRAKRGVERAREYLASTVSAEPDELIFTSGAT 90 (400)
T ss_dssp ----------CCCCCCCCSSSCHHHHHHHHHHHHHHHSCSSC-HHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEESCHH
T ss_pred cCCCcccCCcEEecCCCCCCCCHHHHHHHHHHHHhccCCCcc-cchhHHHHHHHHHHHHHHHHHHcCCCCCcEEEeCCHH
Confidence 445566778899984 44678899999999999887788876 5666667778899999999999999888999999999
Q ss_pred HHHHHHHHhhhhhhccCCC-EEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccCCceEEEEecccc
Q psy15216 1465 ESNNLAIKGAAHFYKKRGK-HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNN 1543 (2602)
Q Consensus 1465 ~al~~al~~l~~~~~~~gd-~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n 1543 (2602)
+|+++++.++.....++|| +|++++++|+++...+..+...|++++.++.++++.+|+++|+++++++|++|++++++|
T Consensus 91 ~al~~~~~~l~~~~~~~gd~~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~n 170 (400)
T 3vax_A 91 ESNNIALLGLAPYGERTGRRHIITSAIEHKAVLEPLEHLAGRGFEVDFLTPGPSGRISVEGVMERLRPDTLLVSLMHVNN 170 (400)
T ss_dssp HHHHHHHHTTHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTTTCEEEEECCCTTCCCCHHHHHTTCCTTEEEEECCSBCT
T ss_pred HHHHHHHHHHHHhhccCCCCEEEECccccHhHHHHHHHHHhcCCeEEEEccCCCCCcCHHHHHHhcCCCceEEEEECCCC
Confidence 9999999988522226899 999999999999988888777799999999998899999999999999999999999999
Q ss_pred ccccccChHHHHHHhhhcCCEEEEecccccCcccccCCCCCccEEEEccccccCCCceEEEE-EecCCC----Ccccccc
Q psy15216 1544 EIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALY-IRRNPR----TRIEAQI 1618 (2602)
Q Consensus 1544 ~tG~~~~l~~I~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K~~gp~G~G~l~-~~~~~~----~~l~~~~ 1618 (2602)
|||.+.|+++|.++|++||+++|+|++|+.+..+.++..+ +|++++|+||++||.|+|+++ ++++.+ ..+.+..
T Consensus 171 ptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~~~~~-~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~~ 249 (400)
T 3vax_A 171 ETGVIQPVAELAQQLRATPTYLHVDAAQGYGKVPGDLTTP-IDMISISGHKIGAPKGVGALVTRRREEMDDERVPLEPIM 249 (400)
T ss_dssp TTCBBCCHHHHHHHHTTSSCEEEEECTTTTTTSGGGGGSC-CSEEEEETGGGTSCSSCEEEEECBCSSSTTCBCCCCCSS
T ss_pred CceeeCcHHHHHHHHHhcCCEEEEEhhhhcCCCCcChhhc-CcEEEEeHHHhCCCCceEEEEEecchhccccccccCcee
Confidence 9999999999999999999999999999999888887777 999999999999999999999 987322 3455655
Q ss_pred ccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecCC
Q psy15216 1619 HGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIE 1698 (2602)
Q Consensus 1619 ~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~~ 1698 (2602)
.++.....+..++++...+.++.++++....++++..+++.++++++.+.|. .+++.+..+.....+.+..+.++..+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (400)
T 3vax_A 250 FGGGQERKLRPGTLPVPLIMGLAEAAKIFEAEHAQWQVAAQDLRSRLLAGLA--STSFQVNGDQDHVVPHILNLSFEDVD 327 (400)
T ss_dssp CSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHT--TTTCEECSCTTSBCTTEEEEECTTCC
T ss_pred cCCCceeeeecCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhC--CCCEEEeCCcccCCCCEEEEEeCCCC
Confidence 5665666777889999999999899987777789999999999999999997 58998887655445566677766656
Q ss_pred cHHHHHhc-CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEec-CCCCCHHHHHHHHHHHHH
Q psy15216 1699 GESLLMAI-KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTI-GRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1699 ~~~~~~~L-~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~-~~~~t~edid~li~~L~~ 1764 (2602)
..++...| +||.+++|..|......+++....+|..+....+++||++ +.++|.+++++++++|++
T Consensus 328 ~~~l~~~L~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~ 395 (400)
T 3vax_A 328 AEAFLVTLKDLVAVATGSASTSASFTPSHVLRAMGLPEEAASKSLRFSWTPGQATDLDVEELARGVAK 395 (400)
T ss_dssp HHHHHHHHHHHHHHTTTTEEEEEEECCHHHHHTTTCCHHHHTSEEEEEEEEC----------------
T ss_pred HHHHHHHHhcCcEEEecccccCCCCCccHHHHHcCCCccccCceEEEEccCCCCCHHHHHHHHHHHHH
Confidence 66666555 7898999887765444456667777776554568999999 999999999999999986
|
| >1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-31 Score=345.50 Aligned_cols=355 Identities=22% Similarity=0.335 Sum_probs=291.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCC-CCCcEEEeCCHHHHHHHHHHhcc
Q psy15216 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-DPREIIWTSGATESNNLAIKGAA 79 (2602)
Q Consensus 1 Ld~a~~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~-~~~~Iv~t~g~T~al~~~~~~l~ 79 (2602)
||+++.++.|+.+.+++.+.+...+.+|+.+.+..++......+++|+++++++|. ++++|++++|+|+|+++++.++.
T Consensus 27 l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~~~ 106 (406)
T 1kmj_A 27 LDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVANSWG 106 (406)
T ss_dssp CCTTTCCCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTH
T ss_pred ecCCccCCCCHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEeCChhHHHHHHHHHhh
Confidence 68888889999999999999988777777655556666778899999999999999 67899999999999999999982
Q ss_pred cccccCCCEEEEcCCCCcccHHHHHH-HHhCCcEEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHH
Q psy15216 80 HFYKKRGKHIITVQTEHKSVLDSIRK-LENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEI 158 (2602)
Q Consensus 80 ~~~~~~gd~Vlv~~~~~~s~~~~~~~-~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I 158 (2602)
...+++||+|+++.++|++....+.. ++..|++++.++.++++.+|+++|++++++++++|++++++||||.++|+++|
T Consensus 107 ~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~l~~i 186 (406)
T 1kmj_A 107 NSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFDEKTRLLAITHVSNVLGTENPLAEM 186 (406)
T ss_dssp HHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCTTSCBCGGGHHHHCCTTEEEEEEESBCTTTCCBCCHHHH
T ss_pred hhcCCCCCEEEEecccchHHHHHHHHHHHhCCCEEEEEecCCCCCcCHHHHHHHhccCCeEEEEeCCCccccCcCCHHHH
Confidence 00027999999999999997655433 34569999999998888899999999999999999999999999999999999
Q ss_pred HHHHHhcCCEEEEecccccccccccCCCCCccEEEeccccccCCCCcEEEEEecCCCCcccceecCCCc-----------
Q psy15216 159 GELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGH----------- 227 (2602)
Q Consensus 159 ~~la~~~g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K~~Gp~G~G~l~~~~~~~~~l~~~~~g~~~----------- 227 (2602)
.++|++||+++|+|++|+.|..++++..+++|++++|+||.+||+|+|++++++++++.+.+...+|+.
T Consensus 187 ~~l~~~~~~~li~D~~~~~g~~~~~~~~~~~d~~~~s~~K~~g~~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (406)
T 1kmj_A 187 ITLAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKEALLQEMPPWEGGGSMIATVSLSEGTT 266 (406)
T ss_dssp HHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGTTSCTTCEEEEECHHHHHHCCCSSCSTTSEEEEETTTEEE
T ss_pred HHHHHHcCCEEEEEchhhcCCCCCcccccCCCEEEEEchhccCCCCcEEEEEeHHHHhhcCCcccCCCceeecccccccc
Confidence 999999999999999999988776666667899999999988999999999998887777766555432
Q ss_pred ----cccccccCcchhHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcccC
Q psy15216 228 ----EYGLRSGTLATHQIVGMGEAFRLAR-IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIE 302 (2602)
Q Consensus 228 ----~~~~~~gt~~~~~~~al~~al~~~~-~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~~ 302 (2602)
+.++..|++++.+++++.+++++.. .++++..++..++++++.+.|.+ ++++++..+. . ...++.+.++..+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~-~-~~~~~~~~~~~~~ 343 (406)
T 1kmj_A 267 WTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLES-VPDLTLYGPQ-N-RLGVIAFNLGKHH 343 (406)
T ss_dssp ECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT-STTEEEESCT-T-CCSEEEEEETTCC
T ss_pred cCCCchhccCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhc-CCCeEEecCC-C-cCCEEEEEECCCC
Confidence 1245567889888888888888654 46788999999999999999988 6799887653 1 2344555565556
Q ss_pred hhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 303 GESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 303 ~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
..++.+.| +||.+++|..|.++ .+..+|. .+++||+++.++|++|+++++++|++.
T Consensus 344 ~~~~~~~l~~~gi~v~~g~~~~~~------~~~~~g~-----~~~iRis~~~~~t~~~i~~~~~~l~~~ 401 (406)
T 1kmj_A 344 AYDVGSFLDNYGIAVRTGHHCAMP------LMAYYNV-----PAMCRASLAMYNTHEEVDRLVTGLQRI 401 (406)
T ss_dssp HHHHHHHHHHTTEECEEECTTCHH------HHHHTTC-----SCEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCcEEEeccccchH------HHHhcCC-----CCeEEEEeecCCCHHHHHHHHHHHHHH
Confidence 66777666 79999999877542 2233443 379999999999999999999999964
|
| >3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.98 E-value=1e-30 Score=343.39 Aligned_cols=353 Identities=17% Similarity=0.233 Sum_probs=288.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhccc
Q psy15216 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAH 80 (2602)
Q Consensus 1 Ld~a~~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~ 80 (2602)
||+++++++|+.+.+++.+.+...+.+|.. .+.++....+..+++++++++++|+++++|++++|+|+++++++.++.
T Consensus 30 ld~~~~~~~~~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~al~~~~~~l~- 107 (406)
T 3cai_A 30 FDAPAGMLIPDSVATTVSTAFRRSGASTVG-AHPSARRSAAVLDAAREAVADLVNADPGGVVLGADRAVLLSLLAEASS- 107 (406)
T ss_dssp CBGGGCCCCCHHHHHHHHHHHHHCCSSSCS-SSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHHHHHHHHHTG-
T ss_pred EeCCCcCCCCHHHHHHHHHHHHhcCCCCCC-ccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCChHHHHHHHHHHHh-
Confidence 688888899999999999999876666643 455555567789999999999999988899999999999999998871
Q ss_pred ccccCCCEEEEcCCCCcccHHHHHHH-HhCCcEEEEeccC-CCCccChHHHHhhccCCceEEEEecccCcccccccHHHH
Q psy15216 81 FYKKRGKHIITVQTEHKSVLDSIRKL-ENDGFRVTYLKPK-NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEI 158 (2602)
Q Consensus 81 ~~~~~gd~Vlv~~~~~~s~~~~~~~~-~~~G~~v~~v~~~-~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I 158 (2602)
..+++||+|+++.++|+++...+..+ ++.|++++.++++ +++.+|+++|+++++++|++|++++++||||.++|+++|
T Consensus 108 ~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~l~~i 187 (406)
T 3cai_A 108 SRAGLGYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAEVDIETGELPTWQWESLISKSTRLVAVNSASGTLGGVTDLRAM 187 (406)
T ss_dssp GGGBTTCEEEEETTSCGGGTHHHHHHHHHHBCEEEEECCCTTTCCCCGGGHHHHCCTTEEEEEEESBCTTTCBBCCCHHH
T ss_pred hccCCCCEEEEcCCccHHHHHHHHHHHHhcCCeEEEEecCcccCCcCHHHHHHHhCCCceEEEEeCCcCCccccCCHHHH
Confidence 01379999999999999988877664 3359999999988 678899999999999999999999999999999999999
Q ss_pred HHHHHhcCCEEEEecccccccccccCCCCCccEEEeccccccCCCCcE-EEEEecCCCCccccee--cCCCccccccccC
Q psy15216 159 GELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIG-ALYIRRNPRTRIEAQI--HGGGHEYGLRSGT 235 (2602)
Q Consensus 159 ~~la~~~g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K~~Gp~G~G-~l~~~~~~~~~l~~~~--~g~~~~~~~~~gt 235 (2602)
.++|+++|+++|+|++|+.|..++++..+++|++++|+||++||. +| ++++++++++.+.+.. +++..+.++..|+
T Consensus 188 ~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~~K~~g~~-~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~t 266 (406)
T 3cai_A 188 TKLVHDVGALVVVDHSAAAPYRLLDIRETDADVVTVNAHAWGGPP-IGAMVFRDPSVMNSFGSVSTNPYATGPARLEIGV 266 (406)
T ss_dssp HHHHHHTTCEEEEECTTTTTTCCCCHHHHCCSEEEEEGGGGTSCS-CEEEEESCHHHHHTSCCCCSCTTCCGGGGGCCSC
T ss_pred HHHHHHcCCEEEEEcccccCCCCCCchhcCCCEEEeehhhhcCCC-cCeEEEEehHHHhhcCCcccCCCCCccccccCCC
Confidence 999999999999999999988777776678899999999998976 88 9999988776676553 2222344566789
Q ss_pred cchhHHHHHHHHHHHHHH---------------hHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc
Q psy15216 236 LATHQIVGMGEAFRLARI---------------EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF 300 (2602)
Q Consensus 236 ~~~~~~~al~~al~~~~~---------------~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~ 300 (2602)
++..+++++.+++++... ++++..++..++++++.+.|.+ +++++++.+.....+ .+.+.++.
T Consensus 267 ~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~-~~~~~~~~ 344 (406)
T 3cai_A 267 HQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSADAYLNRVFDYLMVSLRS-LPLVMLIGRPEAQIP-VVSFAVHK 344 (406)
T ss_dssp CCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CTTEEECCCCSSBCS-EEEEEETT
T ss_pred ccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHhc-CCCeEEcCCccccCC-EEEEEECC
Confidence 999999888888886554 4788899999999999999988 788988765433333 45666666
Q ss_pred cChhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 301 IEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 301 ~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
.+..++.+.| +||.+++|. + ...+..+|..+ ..+++||+++.+++++|+++++++|++
T Consensus 345 ~~~~~~~~~L~~~gi~v~~g~---~-----~~~~~~~g~~~--~~~~iRis~~~~~t~e~i~~~~~~l~~ 404 (406)
T 3cai_A 345 VPADRVVQRLADNGILAIANT---G-----SRVLDVLGVND--VGGAVTVGLAHYSTMAEVDQLVRALAS 404 (406)
T ss_dssp BCHHHHHHHHHHTTEECEECC---S-----CHHHHHHTTTT--TTCCEEEECCTTCCHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHCCcEEecCC---h-----HHHHHHcCCCC--CCCeEEEEeecCCCHHHHHHHHHHHHH
Confidence 5667777776 799998776 1 12344555432 247899999999999999999999985
|
| >3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.6e-31 Score=334.16 Aligned_cols=337 Identities=14% Similarity=0.071 Sum_probs=275.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhhcCCCCCC--CcchhhhHHHHHHHHHHHHHHHhCCCC-CcEEE-eCCHHHHHHHHHH
Q psy15216 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASR--NHIYGWTAEKAIEKARNEVAQLIYADP-REIIW-TSGATESNNLAIK 76 (2602)
Q Consensus 1 Ld~a~~~~~p~~v~~a~~~~l~~~~~~p~~~--~~~~~~~~~~~~~~~r~~lA~~~g~~~-~~Iv~-t~g~T~al~~~~~ 76 (2602)
||.++++|.|+.|++++.+++...++|+.+. .+..+..+...++++|+.+++++|+++ .+|+| ++|+|+++++++.
T Consensus 16 ~n~at~~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~a~~ 95 (377)
T 3e77_A 16 ENLYFQSMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPDNYKVIFLQGGGCGQFSAVPL 95 (377)
T ss_dssp CCEECSCCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHH
T ss_pred ccccccCCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCCeEEEEcCchHHHHHHHHH
Confidence 6888888999999999999998777776542 134466778899999999999999965 47888 5899999999999
Q ss_pred hcccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHH
Q psy15216 77 GAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPIL 156 (2602)
Q Consensus 77 ~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~ 156 (2602)
++.. .++||+|++...++.+. .+.+.+++.|+.++.++.++++..++++++.+++++|++|+++|.+|.||+++|+
T Consensus 96 ~l~~--~~~Gd~v~~~~~g~~~~-~~~~~a~~~G~~~~~~~~~~~~~~~~~~~~~~i~~~t~lV~~~h~et~tG~~~pi- 171 (377)
T 3e77_A 96 NLIG--LKAGRCADYVVTGAWSA-KAAEEAKKFGTINIVHPKLGSYTKIPDPSTWNLNPDASYVYYCANETVHGVEFDF- 171 (377)
T ss_dssp HHGG--GSTTCEEEECCCSHHHH-HHHHHHTTTSEEEECSCCCSSSCSCCCGGGCCCCTTCSCEEEESEETTTTEECSS-
T ss_pred hccC--CCCCCeEEEEECCHHHH-HHHHHHHHhCCceEEeccCCCcCCCCChHHhccCCCccEEEEeCccCchheEchh-
Confidence 9871 12489999888888774 5666777889888888887777788888888899999999999999999999999
Q ss_pred HHHHHHHhcCCEEEEecccccccccccCCCCCccEEEeccccccCCCCcEEEEEecCCCCcccceecCCC-----ccccc
Q psy15216 157 EIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGG-----HEYGL 231 (2602)
Q Consensus 157 ~I~~la~~~g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K~~Gp~G~G~l~~~~~~~~~l~~~~~g~~-----~~~~~ 231 (2602)
+|+++|+++++|++|++|..|+|+++++ ++++|.||++||+|+|++++++++.+.+.|...... .+...
T Consensus 172 ----i~~~~~~~~~vD~~q~~g~~~id~~~~~--~~~~s~~K~~gp~G~g~l~~~~~~l~~~~~~~p~~~~~~~~~~~~~ 245 (377)
T 3e77_A 172 ----IPDVKGAVLVCDMSSNFLSKPVDVSKFG--VIFAGAQKNVGSAGVTVVIVRDDLLGFALRECPSVLEYKVQAGNSS 245 (377)
T ss_dssp ----CCCCTTCCEEEECTTTTTSSCCCGGGCS--EEEEEGGGTTSCTTCEEEEEETTSCSCCCTTSCGGGCHHHHHTTTT
T ss_pred ----hhccCCCEEEEEcccccCCCCCchhhcC--EEEEecccccCCCccEEEEEcHHHHhhccCCCCchhhHHHHhhcCC
Confidence 4788999999999999999999999886 588999998899999999999999887765332211 12234
Q ss_pred cccCcchhHHHHHHHHHHHHH-H-hHHHHHHHHHHHHHHHHHHHhhccCceEEeC-CCCCCCCceEEEEEcccCh-----
Q psy15216 232 RSGTLATHQIVGMGEAFRLAR-I-EMKEELKRILFLQKRLYNGLMESIEEIYING-DMNNRIPHNLNISFNFIEG----- 303 (2602)
Q Consensus 232 ~~gt~~~~~~~al~~al~~~~-~-~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~-~~~~~~~~~~~~~~~~~~~----- 303 (2602)
..+||++..++++.+|+++.. . +++++.++.+++++++++.|.+ ++|+.+.. ++..+.+.++.|.+++.++
T Consensus 246 ~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~~~L~~-~~g~~~~~~~~~~rs~~ivsf~~~~~~~~~~~~ 324 (377)
T 3e77_A 246 LYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDN-SQGFYVCPVEPQNRSKMNIPFRIGNAKGDDALE 324 (377)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHT-STTSEECCSCGGGBCSSEEEEEESSTTCCHHHH
T ss_pred CCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHh-cCCceecCCCHHHcCCcEEEEEcCCCCCchhHH
Confidence 578999999999999999665 4 6899999999999999999988 78888643 2344556667888887543
Q ss_pred hHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 304 ESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 304 ~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
..++..+ +||.+++|... .+.+|+|++.++|.+||++++++|++.
T Consensus 325 ~~~l~~l~~~Gi~~~~g~~~---------------------~g~iRiS~~~~~t~edId~l~~al~~~ 371 (377)
T 3e77_A 325 KRFLDKALELNMLSLKGHRS---------------------VGGIRASLYNAVTIEDVQKLAAFMKKF 371 (377)
T ss_dssp HHHHHHHHHTTEESCBCCTT---------------------TCSEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCcEEeCCCCc---------------------CCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 2455554 78988766421 156999999999999999999999964
|
| >1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=7.1e-30 Score=337.16 Aligned_cols=357 Identities=25% Similarity=0.363 Sum_probs=286.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCC-CCCcEEEeCCHHHHHHHHHHhcc
Q psy15216 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-DPREIIWTSGATESNNLAIKGAA 79 (2602)
Q Consensus 1 Ld~a~~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~-~~~~Iv~t~g~T~al~~~~~~l~ 79 (2602)
||++..++.|+.+.+++.+.+.....+|+.+.+.++.......+++++++++++|. +++++++++|+|+|+++++.++.
T Consensus 32 l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~~~ 111 (420)
T 1t3i_A 32 LDNAATSQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNATEAINLVAYSWG 111 (420)
T ss_dssp CBTTTCCCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTH
T ss_pred ecCCccCCCCHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEcCChHHHHHHHHHHhh
Confidence 57777788899999999999987666776544555544467789999999999999 77899999999999999999981
Q ss_pred cccccCCCEEEEcCCCCcccHHHHHH-HHhCCcEEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHH
Q psy15216 80 HFYKKRGKHIITVQTEHKSVLDSIRK-LENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEI 158 (2602)
Q Consensus 80 ~~~~~~gd~Vlv~~~~~~s~~~~~~~-~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I 158 (2602)
...+++||+|+++.++|++....+.. ++..|++++.++.++++.+|++++++++++++++|++++++||||.++|+++|
T Consensus 112 ~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~l~~i 191 (420)
T 1t3i_A 112 MNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQESFDLEHFKTLLSEKTKLVTVVHISNTLGCVNPAEEI 191 (420)
T ss_dssp HHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCTTSSBCHHHHHHHCCTTEEEEEEESBCTTTCBBCCHHHH
T ss_pred hcccCCCCEEEECcchhHHHHHHHHHHHHhcCcEEEEeccCCCCCcCHHHHHHhhCCCceEEEEeCCcccccCcCCHHHH
Confidence 00027999999999999997544432 23459999999998888899999999999999999999999999999999999
Q ss_pred HHHHHhcCCEEEEecccccccccccCCCCCccEEEeccccccCCCCcEEEEEecCCCCcccceecCCCc-----------
Q psy15216 159 GELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGH----------- 227 (2602)
Q Consensus 159 ~~la~~~g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K~~Gp~G~G~l~~~~~~~~~l~~~~~g~~~----------- 227 (2602)
.++|++||+++|+|++|+.+..++++..+++|++++|+||++|++|+|++++++++++.+.+...+|+.
T Consensus 192 ~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~sK~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (420)
T 1t3i_A 192 AQLAHQAGAKVLVDACQSAPHYPLDVQLIDCDWLVASGHKMCAPTGIGFLYGKEEILEAMPPFFGGGEMIAEVFFDHFTT 271 (420)
T ss_dssp HHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGTTSCTTCEEEEECHHHHHHSCCCSCSTTSEEEECSSCEEE
T ss_pred HHHHHHcCCEEEEEhhhccCCccCchhhcCCCEEEEehhhhcCCCceEEEEEchHHHhhcCceecCCCccccccccccCC
Confidence 999999999999999999988776666677899999999999999999999998887777766554432
Q ss_pred ---cccccccCcchhHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCC--CCCceEEEEEccc
Q psy15216 228 ---EYGLRSGTLATHQIVGMGEAFRLAR-IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNN--RIPHNLNISFNFI 301 (2602)
Q Consensus 228 ---~~~~~~gt~~~~~~~al~~al~~~~-~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~--~~~~~~~~~~~~~ 301 (2602)
+.++..+++++.+.+++.+++++.. .++++..++..++++++.+.|.+ ++++++..+... ....++.+.++..
T Consensus 272 ~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~ 350 (420)
T 1t3i_A 272 GELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQ-IPQLRLYGPNPKHGDRAALASFNVAGL 350 (420)
T ss_dssp CCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHT-CTTEEEESCCGGGSCBCSEEEEEETTB
T ss_pred CCchhhccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh-CCCeEEeCCCccccccCCEEEEEECCC
Confidence 2335567888888888877888654 35788999999999999999988 679988765421 1134555566655
Q ss_pred ChhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 302 EGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 302 ~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
+..++.+.| +||.++++..|..+ .+..+|. .+++||+++.+++++|+++++++|++.
T Consensus 351 ~~~~~~~~l~~~gi~v~~~~~~~~~------~~~~~g~-----~~~iRis~~~~~~~~~i~~~~~~l~~~ 409 (420)
T 1t3i_A 351 HASDVATMVDQDGIAIRSGHHCTQP------LHRLFDA-----SGSARASLYFYNTKEEIDLFLQSLQAT 409 (420)
T ss_dssp CHHHHHHHHHTTTEECBCSCTTCHH------HHHHTTC-----CCCEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCeEEeeccccchH------HHHhcCC-----CCeEEEecCCCCCHHHHHHHHHHHHHH
Confidence 566777666 79999998776431 2233443 378999999999999999999999964
|
| >1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-29 Score=333.65 Aligned_cols=358 Identities=22% Similarity=0.324 Sum_probs=288.4
Q ss_pred eeeeccCC-CCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCC-CCCcEEEeCCHHHHHHHHH
Q psy15216 1394 TNIVFKDA-TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-DPREIIWTSGATESNNLAI 1471 (2602)
Q Consensus 1394 ~~v~L~~~-~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~-~~~~iv~t~gaT~al~~al 1471 (2602)
..++|+.+ ..+.++.+.+++.+.+...+++|+.+.+..++.......++|++++++++. ++++|++|+|+|+|++.++
T Consensus 23 ~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~ 102 (406)
T 1kmj_A 23 PLAYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVA 102 (406)
T ss_dssp ECEECCTTTCCCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHH
T ss_pred ceEEecCCccCCCCHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEeCChhHHHHHHH
Confidence 35677643 346788999999999988777887655666667778899999999999998 6789999999999999999
Q ss_pred HhhhhhhccCCCEEEEcCCCCcchHHHHHH-HHhCCcEEEEeccCCCCCcChhHHHhhccCCceEEEEeccccccccccC
Q psy15216 1472 KGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP 1550 (2602)
Q Consensus 1472 ~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~-~~~~G~~v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~ 1550 (2602)
.++....+++||+|+++.++|++....+.. +...|++++.++.++++.+|+++|++++++++++|++++++||||.++|
T Consensus 103 ~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~ 182 (406)
T 1kmj_A 103 NSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFDEKTRLLAITHVSNVLGTENP 182 (406)
T ss_dssp HHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCTTSCBCGGGHHHHCCTTEEEEEEESBCTTTCCBCC
T ss_pred HHhhhhcCCCCCEEEEecccchHHHHHHHHHHHhCCCEEEEEecCCCCCcCHHHHHHHhccCCeEEEEeCCCccccCcCC
Confidence 998211127999999999999997655433 3445999999999888889999999999999999999999999999999
Q ss_pred hHHHHHHhhhcCCEEEEecccccCcccccCCCCCccEEEEccccccCCCceEEEEEecCCCCccccccccCCc-------
Q psy15216 1551 ILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGH------- 1623 (2602)
Q Consensus 1551 l~~I~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K~~gp~G~G~l~~~~~~~~~l~~~~~g~~~------- 1623 (2602)
+++|.++|++||+++|+|++|+.|..++++..+++|++++|+||.+||+|+|++++++++++.+.+...+|..
T Consensus 183 l~~i~~l~~~~~~~li~D~~~~~g~~~~~~~~~~~d~~~~s~~K~~g~~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (406)
T 1kmj_A 183 LAEMITLAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKEALLQEMPPWEGGGSMIATVSLS 262 (406)
T ss_dssp HHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGTTSCTTCEEEEECHHHHHHCCCSSCSTTSEEEEETT
T ss_pred HHHHHHHHHHcCCEEEEEchhhcCCCCCcccccCCCEEEEEchhccCCCCcEEEEEeHHHHhhcCCcccCCCceeecccc
Confidence 9999999999999999999999988766665667899999999988999999999998877766665544431
Q ss_pred --------cccCCCCCcchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEE
Q psy15216 1624 --------EYGLRSGTLATHQIVGMGEAFRLAR-IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISF 1694 (2602)
Q Consensus 1624 --------~~~~~~gt~~~~~~~al~~aL~~~~-~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~ 1694 (2602)
+..+..|++++.+++++.+++++.. .+++...++..++++++.+.|.+ ++++.+..+. . ...+..+.+
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~-~-~~~~~~~~~ 339 (406)
T 1kmj_A 263 EGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLES-VPDLTLYGPQ-N-RLGVIAFNL 339 (406)
T ss_dssp TEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT-STTEEEESCT-T-CCSEEEEEE
T ss_pred cccccCCCchhccCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhc-CCCeEEecCC-C-cCCEEEEEE
Confidence 1245678889999988888888655 46788899999999999999988 7789887653 1 234444555
Q ss_pred ecCCcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1695 NFIEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1695 ~~~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
+..+..++...| +||.+++|..|..+ ....++. .+++||+++.++|.+|+++++++|++.
T Consensus 340 ~~~~~~~~~~~l~~~gi~v~~g~~~~~~------~~~~~g~-----~~~iRis~~~~~t~~~i~~~~~~l~~~ 401 (406)
T 1kmj_A 340 GKHHAYDVGSFLDNYGIAVRTGHHCAMP------LMAYYNV-----PAMCRASLAMYNTHEEVDRLVTGLQRI 401 (406)
T ss_dssp TTCCHHHHHHHHHHTTEECEEECTTCHH------HHHHTTC-----SCEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhhCCcEEEeccccchH------HHHhcCC-----CCeEEEEeecCCCHHHHHHHHHHHHHH
Confidence 544556666666 79999998876532 1222333 279999999999999999999999973
|
| >3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.5e-30 Score=337.98 Aligned_cols=366 Identities=34% Similarity=0.551 Sum_probs=291.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhccc
Q psy15216 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAH 80 (2602)
Q Consensus 1 Ld~a~~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~ 80 (2602)
||+++++++|+.+++++.+.+...+.+|+. .|..+....+..+++|+++++++|+++++|++|+|+|+|+++++.++..
T Consensus 22 Ld~~~~~~~~~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~~ 100 (432)
T 3a9z_A 22 MDYNATTPLEPEVIQAVTEAMKEAWGNPSS-SYVAGRKAKDIINTARASLAKMIGGKPQDIIFTSGGTESNNLVIHSTVR 100 (432)
T ss_dssp CBTTTCCCCCHHHHHHHHHHHHHCCSCTTC-SSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHHHHHHHHHHHH
T ss_pred eeCCccCCCCHHHHHHHHHHHHHhcCCCcc-CcHHHHHHHHHHHHHHHHHHHHcCCCcCeEEEeCChHHHHHHHHHHHHh
Confidence 788898899999999999998877778874 4555666677889999999999999888999999999999999998741
Q ss_pred ccc----cCCC-------------EEEEcCCCCcccHHHHHHH-HhCCcEEEEeccCC-CCccChHHHHhhccCCceEEE
Q psy15216 81 FYK----KRGK-------------HIITVQTEHKSVLDSIRKL-ENDGFRVTYLKPKN-NGLITLSQLEEKICSDTILVS 141 (2602)
Q Consensus 81 ~~~----~~gd-------------~Vlv~~~~~~s~~~~~~~~-~~~G~~v~~v~~~~-~~~ld~e~l~~~i~~~tklv~ 141 (2602)
.++ ++|| +|+++..+|+++..++..+ +..|++++.++.++ ++.+|+++|++++++++++|+
T Consensus 101 ~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~ 180 (432)
T 3a9z_A 101 CFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSKVNGQVEVEDILAAVRPTTCLVT 180 (432)
T ss_dssp HHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEECCCTTTSSCCHHHHHHTCCTTEEEEE
T ss_pred hhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCcEEEEEecCcccCCcCHHHHHHhccCCceEEE
Confidence 111 3775 5556666666666666655 45699999999876 778999999999999999999
Q ss_pred EecccCcccccccHHHHHHHHHhcC----------CEEEEecccccccccccCCCCCccEEEeccccccCCCCcEEEEEe
Q psy15216 142 VMLVNNEIGVIQPILEIGELCRSKG----------VIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIR 211 (2602)
Q Consensus 142 i~~~~npTG~~~~l~~I~~la~~~g----------~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K~~Gp~G~G~l~~~ 211 (2602)
+++++||||.++|+++|.++|+++| +++|+|++|+.+..++++...++|++++|+||++||. +|+++++
T Consensus 181 ~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~~~~~~~livDea~~~~~~~~~~~~~~~d~~~~s~~K~~g~~-~G~~~~~ 259 (432)
T 3a9z_A 181 IMLANNETGVIMPISEISRRIKALNQIRAASGLPRVLVHTDAAQALGKRRVDVEDLGVDFLTIVGHKFYGPR-IGALYVR 259 (432)
T ss_dssp CCSBCTTTCBBCCHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTTTTTSCCCHHHHCCSEEEEEGGGTTCCS-CEEEEET
T ss_pred EECcccCcccccCHHHHHHHHHhcCcccccccCCceEEEEEchhhhCCcccChhhcCCCEEEEehhHhcCCc-ceEEEEc
Confidence 9999999999999999999999999 9999999999888777766667899999999999987 9999999
Q ss_pred cCC-CCcccceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCce--EEeCCC--
Q psy15216 212 RNP-RTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEI--YINGDM-- 286 (2602)
Q Consensus 212 ~~~-~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~--~l~~~~-- 286 (2602)
++. ...+.+.+.+++....+..++++...++++.+++++...++++..++..++++++.+.|.+ ++++ .+..+.
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~~~~ 338 (432)
T 3a9z_A 260 GVGKLTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAADLVSENCETYEAHMRDIRDYLEERLEA-EFGKRIHLNSRFPG 338 (432)
T ss_dssp TBTTTBCCCCSCCSSCGGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHGGGEEESSCCTT
T ss_pred cccccCCcCceeecCCccccccCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh-ccCCcEEEeCCCCc
Confidence 876 5567776666665566778899999999998899876667889999999999999999987 4443 333431
Q ss_pred CCCCCceEEEEEcc--cChhHHHHHhCCeEEcccccCCCCC-CChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHH
Q psy15216 287 NNRIPHNLNISFNF--IEGESLLMAIKDIAVSSGSACTSAS-LEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTI 363 (2602)
Q Consensus 287 ~~~~~~~~~~~~~~--~~~~~~~~~L~gI~v~~g~~~~~~~-~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li 363 (2602)
....+..+.|.++. .+...+...+.++.++.|..|.+.. ..+...+..+|+......++|||+++.++|++|+++++
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~l~~~g~~~~~~~~~iRis~~~~~t~eei~~~~ 418 (432)
T 3a9z_A 339 VERLPNTCNFSIQGSQLRGYMVLAQCQTLLASVGASCHSDHEDRPSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVDLIV 418 (432)
T ss_dssp CCBCTTEEEEEECSTTCCHHHHHHHCSSEECBSSCGGGGGGTTSCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHH
T ss_pred ccCCCCEEEEEeCCCCCcHHHHHHHhcCeEEeccccccCCCCCCccHHHHhcCCCccccCceEEEEcCCCCCHHHHHHHH
Confidence 12345566677764 2456677777899999998886531 12234555667643333589999999999999999999
Q ss_pred HHHHhh
Q psy15216 364 KLLKMK 369 (2602)
Q Consensus 364 ~~L~~~ 369 (2602)
++|++.
T Consensus 419 ~~l~~~ 424 (432)
T 3a9z_A 419 QDLKQA 424 (432)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999964
|
| >3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-29 Score=331.08 Aligned_cols=355 Identities=17% Similarity=0.234 Sum_probs=284.6
Q ss_pred eeeccC-CCCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHh
Q psy15216 1395 NIVFKD-ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKG 1473 (2602)
Q Consensus 1395 ~v~L~~-~~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~ 1473 (2602)
.++|+. ...+.++.+.+++.+.+...+.+|+. .|.++........++|+++++++|+++++|++|+|+|+++.+++.+
T Consensus 27 ~~~ld~~~~~~~~~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~al~~~~~~ 105 (406)
T 3cai_A 27 WVHFDAPAGMLIPDSVATTVSTAFRRSGASTVG-AHPSARRSAAVLDAAREAVADLVNADPGGVVLGADRAVLLSLLAEA 105 (406)
T ss_dssp CEECBGGGCCCCCHHHHHHHHHHHHHCCSSSCS-SSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHHHHHHHHH
T ss_pred eEEEeCCCcCCCCHHHHHHHHHHHHhcCCCCCC-ccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCChHHHHHHHHHH
Confidence 567763 34578899999999999876667753 5666666778899999999999999888999999999999999988
Q ss_pred hhhhhccCCCEEEEcCCCCcchHHHHHHH-HhCCcEEEEeccC-CCCCcChhHHHhhccCCceEEEEeccccccccccCh
Q psy15216 1474 AAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDGFRVTYLKPK-NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPI 1551 (2602)
Q Consensus 1474 l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~-~~~G~~v~~v~~~-~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l 1551 (2602)
+.. .+++||+|+++.++|+++...+..+ ...|++++.++.+ .++.+|+++|+++++++|++|++++++||||.+.|+
T Consensus 106 l~~-~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~l 184 (406)
T 3cai_A 106 SSS-RAGLGYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAEVDIETGELPTWQWESLISKSTRLVAVNSASGTLGGVTDL 184 (406)
T ss_dssp TGG-GGBTTCEEEEETTSCGGGTHHHHHHHHHHBCEEEEECCCTTTCCCCGGGHHHHCCTTEEEEEEESBCTTTCBBCCC
T ss_pred Hhh-ccCCCCEEEEcCCccHHHHHHHHHHHHhcCCeEEEEecCcccCCcCHHHHHHHhCCCceEEEEeCCcCCccccCCH
Confidence 721 1379999999999999987777654 3349999999988 678899999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCEEEEecccccCcccccCCCCCccEEEEccccccCCCceE-EEEEecCCCCcccccc--ccCCccccCC
Q psy15216 1552 LEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIG-ALYIRRNPRTRIEAQI--HGGGHEYGLR 1628 (2602)
Q Consensus 1552 ~~I~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K~~gp~G~G-~l~~~~~~~~~l~~~~--~g~~~~~~~~ 1628 (2602)
++|.++|++||+++|+|++|+.|..++++..+++|++++|+||++||. +| ++++++++++.+.+.. +++..+.++.
T Consensus 185 ~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~~K~~g~~-~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 263 (406)
T 3cai_A 185 RAMTKLVHDVGALVVVDHSAAAPYRLLDIRETDADVVTVNAHAWGGPP-IGAMVFRDPSVMNSFGSVSTNPYATGPARLE 263 (406)
T ss_dssp HHHHHHHHHTTCEEEEECTTTTTTCCCCHHHHCCSEEEEEGGGGTSCS-CEEEEESCHHHHHTSCCCCSCTTCCGGGGGC
T ss_pred HHHHHHHHHcCCEEEEEcccccCCCCCCchhcCCCEEEeehhhhcCCC-cCeEEEEehHHHhhcCCcccCCCCCcccccc
Confidence 999999999999999999999988777766667999999999988876 78 9999987666665542 2333344566
Q ss_pred CCCcchhHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEE
Q psy15216 1629 SGTLATHQIVGMGEAFRLARI---------------EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNIS 1693 (2602)
Q Consensus 1629 ~gt~~~~~~~al~~aL~~~~~---------------~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~ 1693 (2602)
.++++..++.++.+++++... ++++..++..++++++.+.|.+ ++++.+..+.....+ ...+.
T Consensus 264 ~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~-~~~~~ 341 (406)
T 3cai_A 264 IGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSADAYLNRVFDYLMVSLRS-LPLVMLIGRPEAQIP-VVSFA 341 (406)
T ss_dssp CSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CTTEEECCCCSSBCS-EEEEE
T ss_pred CCCccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHhc-CCCeEEcCCccccCC-EEEEE
Confidence 789999999888888886553 4788899999999999999988 788888755433333 45555
Q ss_pred EecCCcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1694 FNFIEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1694 ~~~~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
++..+..++...| +||.+++|.. .+....+|... ..+++|++++.++|.+|+++++++|++
T Consensus 342 ~~~~~~~~~~~~L~~~gi~v~~g~~--------~~~~~~~g~~~--~~~~iRis~~~~~t~e~i~~~~~~l~~ 404 (406)
T 3cai_A 342 VHKVPADRVVQRLADNGILAIANTG--------SRVLDVLGVND--VGGAVTVGLAHYSTMAEVDQLVRALAS 404 (406)
T ss_dssp ETTBCHHHHHHHHHHTTEECEECCS--------CHHHHHHTTTT--TTCCEEEECCTTCCHHHHHHHHHHHHT
T ss_pred ECCcCHHHHHHHHHHCCcEEecCCh--------HHHHHHcCCCC--CCCeEEEEeecCCCHHHHHHHHHHHHH
Confidence 6555566676666 7999987761 12333444331 237899999999999999999999985
|
| >3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.4e-31 Score=336.07 Aligned_cols=332 Identities=12% Similarity=0.073 Sum_probs=252.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhhcCCCCCC--CcchhhhHHHHHHHHHHHHHHHhCCCC-CcEEE-eCCHHHHHHHHHH
Q psy15216 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASR--NHIYGWTAEKAIEKARNEVAQLIYADP-REIIW-TSGATESNNLAIK 76 (2602)
Q Consensus 1 Ld~a~~~~~p~~v~~a~~~~l~~~~~~p~~~--~~~~~~~~~~~~~~~r~~lA~~~g~~~-~~Iv~-t~g~T~al~~~~~ 76 (2602)
||++++++.|+.|++++.+++...++||.+. .+..+..+...++++|+.+++++|+++ .+|+| |+|+|+++++++.
T Consensus 30 l~~agpt~~p~~V~~a~~~~~~~~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~ai~ 109 (386)
T 3qm2_A 30 NFSSGPAMLPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGGRGQFAGVPL 109 (386)
T ss_dssp ECCSSSCCCCHHHHHHHTCC-----------------------CCHHHHHHHHHHHTCCTTEEEEEEESCTTHHHHHHHH
T ss_pred cccCCCCCCCHHHHHHHHHHHHhccccCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHH
Confidence 6899999999999999999887767776541 123355667789999999999999954 47888 6999999999999
Q ss_pred hcccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccC--CCCc-cChHHHHhhccCCceEEEEecccCccccc-
Q psy15216 77 GAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK--NNGL-ITLSQLEEKICSDTILVSVMLVNNEIGVI- 152 (2602)
Q Consensus 77 ~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~--~~~~-ld~e~l~~~i~~~tklv~i~~~~npTG~~- 152 (2602)
++. ++||+|++...++.+. .+...+++.| ++..++++ ..|. +++++++.+++++|++|+++|.+|.||++
T Consensus 110 ~l~----~~gd~v~~~~~~~~~~-~~~~~a~~~G-~v~~v~~~~~~~G~~~~~~~~~~~l~~~t~lV~~~h~et~tG~~i 183 (386)
T 3qm2_A 110 NLL----GDKTTADYVDAGYWAA-SAIKEAKKYC-APQIIDAKITVDGKRAVKPMREWQLSDNAAYLHYCPNETIDGIAI 183 (386)
T ss_dssp HHC----TTCCEEEEEESSHHHH-HHHHHHTTTS-EEEEEECEEEETTEEEECCGGGCCCCTTCSCEEECSEETTTTEEC
T ss_pred hcc----CCCCeEEEEeCCHHHH-HHHHHHHHhC-CeEEEecCcccCCCCCCchHHHhhcCCCCcEEEEECCcCCcCEec
Confidence 987 7899987766666664 4555567778 89999987 5564 88999999999999999999999999996
Q ss_pred ccHHHHHHHHHhcCCEEEEecccccccccccCCCCCccEEEeccccccCCCCcEEEEEecCCCCcccceecCC-----Cc
Q psy15216 153 QPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGG-----GH 227 (2602)
Q Consensus 153 ~~l~~I~~la~~~g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K~~Gp~G~G~l~~~~~~~~~l~~~~~g~-----~~ 227 (2602)
.|+++|. +|+++++|++|++|..|+|+++++ ++++|+||++||+|+|+||+++++.+.+.|..... ..
T Consensus 184 ~pi~~i~-----~g~~~~vDa~qs~g~~pidv~~~~--~~~~s~hK~lGP~G~g~l~v~~~~~~~~~~~~p~~~~~~~~~ 256 (386)
T 3qm2_A 184 DETPDFG-----PEVVVTADFSSTILSAPLDVSRYG--VIYAGAQKNIGPAGLTLVIVREDLLGKAHESCPSILDYTVLN 256 (386)
T ss_dssp CCCCCCC-----TTCCEEEECTTTTTSSCCCGGGCS--EEEEETTTTTCCTTEEEEEEEGGGCSCCCTTSCGGGCHHHHH
T ss_pred Cchhhhc-----CCCEEEEEcccccCCCCCCccccC--EEEEecccccCCCccEEEEECHHHHhhhcccCCcHHHHHHHh
Confidence 8999885 799999999999999999999885 67799999889999999999999887776533211 12
Q ss_pred cccccccCcchhHHHHHHHHHHHHH-H-hHHHHHHHHHHHHHHHHHHHhhccCce-EEeCCCCCCCCceEEEEEcc--cC
Q psy15216 228 EYGLRSGTLATHQIVGMGEAFRLAR-I-EMKEELKRILFLQKRLYNGLMESIEEI-YINGDMNNRIPHNLNISFNF--IE 302 (2602)
Q Consensus 228 ~~~~~~gt~~~~~~~al~~al~~~~-~-~~~~~~~~~~~l~~~l~~~L~~~~~g~-~l~~~~~~~~~~~~~~~~~~--~~ 302 (2602)
+...+++|||+++++++.+|+++.. . +++++.++..++++++++.|.+ + ++ ....++..+.+.++.|.++. .+
T Consensus 257 ~~~~~~gTp~v~~i~~l~~Al~~~~~~gG~~~i~~~~~~l~~~l~~~l~~-~-~~~~~~~~~~~rs~~iv~f~~~~~~~~ 334 (386)
T 3qm2_A 257 DNDSMFNTPPTFAWYLSGLVFKWLKAQGGVAAMHKINQQKAELLYGVIDN-S-DFYRNDVAQANRSRMNVPFQLADNTLD 334 (386)
T ss_dssp HC-------CCSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHT-C-SSEECCBCGGGBCSSEEEEEESSGGGH
T ss_pred hcCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH-C-CCcccCCCHHHcCceEEEEECCCcccc
Confidence 3345678999999999999999665 4 6999999999999999999987 4 44 33333445566778888874 33
Q ss_pred hhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 303 GESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 303 ~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
..++..| +||.++.|..|. +.+|+|++.++|.+||++++++|++.
T Consensus 335 -~~~~~~L~~~gI~~~~g~~~~---------------------~~iRiS~~~~~t~edId~l~~~l~~~ 381 (386)
T 3qm2_A 335 -KVFLEESFAAGLHALKGHRVV---------------------GGMRASIYNAMPIEGVKALTDFMIDF 381 (386)
T ss_dssp -HHHHHHHHHTTEECCBCCTTT---------------------CSEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHCCCEEeCCCCCc---------------------CeEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4566656 799988776542 45999999999999999999999964
|
| >3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-29 Score=320.79 Aligned_cols=332 Identities=14% Similarity=0.077 Sum_probs=270.1
Q ss_pred CCCCCCHHHHHHHHHHHhhccCCCCCc--cchhHHHHHHHHHHHHHHHHHHhCCCC-CcEEE-eCCHHHHHHHHHHhhhh
Q psy15216 1401 ATTPIDPRVVDKMIPYLRVQFGNPASR--NHIYGWTAEKAIEKARNEVAQLIYADP-REIIW-TSGATESNNLAIKGAAH 1476 (2602)
Q Consensus 1401 ~~~~~~~~v~eal~~~l~~~~~np~~~--~~~~~~~~~~~~~~lr~~ia~~~g~~~-~~iv~-t~gaT~al~~al~~l~~ 1476 (2602)
.+.++|+++++++.+.+.+.++||.+. .+..+..+.+.++++|+.+++++|+++ ++|+| |+|+|+++++++.++..
T Consensus 20 t~~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~a~~~l~~ 99 (377)
T 3e77_A 20 FQSMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPDNYKVIFLQGGGCGQFSAVPLNLIG 99 (377)
T ss_dssp CSCCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHGG
T ss_pred ccCCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCCeEEEEcCchHHHHHHHHHhccC
Confidence 346899999999999998777776542 144577888999999999999999964 57888 58999999999999872
Q ss_pred hhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccCCceEEEEeccccccccccChHHHHH
Q psy15216 1477 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGE 1556 (2602)
Q Consensus 1477 ~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~~ 1556 (2602)
.++||+|++...+|.+. .+.+.+++.|..+++++.++++.+++++++.+++++|++|.++|.+|.||+++|+
T Consensus 100 --~~~Gd~v~~~~~g~~~~-~~~~~a~~~G~~~~~~~~~~~~~~~~~~~~~~i~~~t~lV~~~h~et~tG~~~pi----- 171 (377)
T 3e77_A 100 --LKAGRCADYVVTGAWSA-KAAEEAKKFGTINIVHPKLGSYTKIPDPSTWNLNPDASYVYYCANETVHGVEFDF----- 171 (377)
T ss_dssp --GSTTCEEEECCCSHHHH-HHHHHHTTTSEEEECSCCCSSSCSCCCGGGCCCCTTCSCEEEESEETTTTEECSS-----
T ss_pred --CCCCCeEEEEECCHHHH-HHHHHHHHhCCceEEeccCCCcCCCCChHHhccCCCccEEEEeCccCchheEchh-----
Confidence 13499999888888774 4556667779888888887777788888888899999999999999999999998
Q ss_pred HhhhcCCEEEEecccccCcccccCCCCCccEEEEccccccCCCceEEEEEecCCCCccccccccCC-----ccccCCCCC
Q psy15216 1557 LCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGG-----HEYGLRSGT 1631 (2602)
Q Consensus 1557 ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K~~gp~G~G~l~~~~~~~~~l~~~~~g~~-----~~~~~~~gt 1631 (2602)
+|+++|+++++|++|++|..++|+.+++ ++++|+||++||+|+|++++++++++.+.|...+.. .+...+.+|
T Consensus 172 i~~~~~~~~~vD~~q~~g~~~id~~~~~--~~~~s~~K~~gp~G~g~l~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~T 249 (377)
T 3e77_A 172 IPDVKGAVLVCDMSSNFLSKPVDVSKFG--VIFAGAQKNVGSAGVTVVIVRDDLLGFALRECPSVLEYKVQAGNSSLYNT 249 (377)
T ss_dssp CCCCTTCCEEEECTTTTTSSCCCGGGCS--EEEEEGGGTTSCTTCEEEEEETTSCSCCCTTSCGGGCHHHHHTTTTCSSC
T ss_pred hhccCCCEEEEEcccccCCCCCchhhcC--EEEEecccccCCCccEEEEEcHHHHhhccCCCCchhhHHHHhhcCCCCCC
Confidence 4889999999999999999999999886 588999998899999999999998877765332211 123446789
Q ss_pred cchhHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHhhcCCcEEEeC-CCCCCCCceEEEEEecCCc-----HHHH
Q psy15216 1632 LATHQIVGMGEAFRLAR-I-EMKEELKRILFLQKRLYNGLMESIEEIYING-DMNNRIPHNLNISFNFIEG-----ESLL 1703 (2602)
Q Consensus 1632 ~~~~~~~al~~aL~~~~-~-~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~-~~~~~~~~~~~~~~~~~~~-----~~~~ 1703 (2602)
|++..++++.+||+++. . +++.+.++.++++++++++|.+ ++++.+.. .+..+.+..+.|.+++.+. ..++
T Consensus 250 p~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~~~L~~-~~g~~~~~~~~~~rs~~ivsf~~~~~~~~~~~~~~~l 328 (377)
T 3e77_A 250 PPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDN-SQGFYVCPVEPQNRSKMNIPFRIGNAKGDDALEKRFL 328 (377)
T ss_dssp CCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHT-STTSEECCSCGGGBCSSEEEEEESSTTCCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHh-cCCceecCCCHHHcCCcEEEEEcCCCCCchhHHHHHH
Confidence 99999999999999665 4 6999999999999999999988 78887643 2334556667888886543 2344
Q ss_pred Hhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1704 MAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1704 ~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
..+ +||.+++|... .+.+|+|++.++|.+||++++++|++
T Consensus 329 ~~l~~~Gi~~~~g~~~---------------------~g~iRiS~~~~~t~edId~l~~al~~ 370 (377)
T 3e77_A 329 DKALELNMLSLKGHRS---------------------VGGIRASLYNAVTIEDVQKLAAFMKK 370 (377)
T ss_dssp HHHHHTTEESCBCCTT---------------------TCSEEEECCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHCCcEEeCCCCc---------------------CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 444 79988766421 15699999999999999999999997
|
| >1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=7.9e-29 Score=327.14 Aligned_cols=359 Identities=25% Similarity=0.352 Sum_probs=283.1
Q ss_pred eeeccCC-CCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCC-CCCcEEEeCCHHHHHHHHHH
Q psy15216 1395 NIVFKDA-TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-DPREIIWTSGATESNNLAIK 1472 (2602)
Q Consensus 1395 ~v~L~~~-~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~-~~~~iv~t~gaT~al~~al~ 1472 (2602)
.++++.+ ..+.++.+.+++.+.++...++|+.+.+.++........++|++++++++. +++++++|+|+|+|+++++.
T Consensus 29 ~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~ 108 (420)
T 1t3i_A 29 LVYLDNAATSQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNATEAINLVAY 108 (420)
T ss_dssp CEECBTTTCCCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHH
T ss_pred eEEecCCccCCCCHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEcCChHHHHHHHHH
Confidence 5677643 346788999999999987767777545555555567789999999999998 77899999999999999999
Q ss_pred hhhhhhccCCCEEEEcCCCCcchHHHHH-HHHhCCcEEEEeccCCCCCcChhHHHhhccCCceEEEEeccccccccccCh
Q psy15216 1473 GAAHFYKKRGKHIITVQTEHKSVLDSIR-KLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPI 1551 (2602)
Q Consensus 1473 ~l~~~~~~~gd~Vlv~~~~~~s~~~~~~-~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l 1551 (2602)
++....+++||+|++++++|++....+. .+...|++++.++.+.++.+|++++++++++++++|++++++||||.++|+
T Consensus 109 ~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~l 188 (420)
T 1t3i_A 109 SWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQESFDLEHFKTLLSEKTKLVTVVHISNTLGCVNPA 188 (420)
T ss_dssp HTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCTTSSBCHHHHHHHCCTTEEEEEEESBCTTTCBBCCH
T ss_pred HhhhcccCCCCEEEECcchhHHHHHHHHHHHHhcCcEEEEeccCCCCCcCHHHHHHhhCCCceEEEEeCCcccccCcCCH
Confidence 9821112799999999999999654332 223349999999998888899999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCEEEEecccccCcccccCCCCCccEEEEccccccCCCceEEEEEecCCCCccccccccCCc--------
Q psy15216 1552 LEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGH-------- 1623 (2602)
Q Consensus 1552 ~~I~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K~~gp~G~G~l~~~~~~~~~l~~~~~g~~~-------- 1623 (2602)
++|.++|++||+++|+|++|+.|..++++..+++|++++|+||++||.|+|++++++++++.+.+...+|..
T Consensus 189 ~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~sK~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (420)
T 1t3i_A 189 EEIAQLAHQAGAKVLVDACQSAPHYPLDVQLIDCDWLVASGHKMCAPTGIGFLYGKEEILEAMPPFFGGGEMIAEVFFDH 268 (420)
T ss_dssp HHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGTTSCTTCEEEEECHHHHHHSCCCSCSTTSEEEECSSC
T ss_pred HHHHHHHHHcCCEEEEEhhhccCCccCchhhcCCCEEEEehhhhcCCCceEEEEEchHHHhhcCceecCCCccccccccc
Confidence 999999999999999999999988766666667899999999988999999999998776666655444321
Q ss_pred ------cccCCCCCcchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCC--CCCceEEEEE
Q psy15216 1624 ------EYGLRSGTLATHQIVGMGEAFRLARI-EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNN--RIPHNLNISF 1694 (2602)
Q Consensus 1624 ------~~~~~~gt~~~~~~~al~~aL~~~~~-~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~--~~~~~~~~~~ 1694 (2602)
+.++..+++++.+++++.++++++.. ++++..+++.++++++.+.|.+ .+++.+..+... ....+..+.+
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~~~~~~~~~~~~~~ 347 (420)
T 1t3i_A 269 FTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQ-IPQLRLYGPNPKHGDRAALASFNV 347 (420)
T ss_dssp EEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHT-CTTEEEESCCGGGSCBCSEEEEEE
T ss_pred cCCCCchhhccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh-CCCeEEeCCCccccccCCEEEEEE
Confidence 23355678888888888778886553 5788899999999999999988 679988765310 1134445555
Q ss_pred ecCCcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1695 NFIEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1695 ~~~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
+..+..++...| +||.+++|..|..+ ....++. .+++||+++.+++.+|+++++++|++.
T Consensus 348 ~~~~~~~~~~~l~~~gi~v~~~~~~~~~------~~~~~g~-----~~~iRis~~~~~~~~~i~~~~~~l~~~ 409 (420)
T 1t3i_A 348 AGLHASDVATMVDQDGIAIRSGHHCTQP------LHRLFDA-----SGSARASLYFYNTKEEIDLFLQSLQAT 409 (420)
T ss_dssp TTBCHHHHHHHHHTTTEECBCSCTTCHH------HHHHTTC-----CCCEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHCCeEEeeccccchH------HHHhcCC-----CCeEEEecCCCCCHHHHHHHHHHHHHH
Confidence 544556666666 79999988766431 1122332 378999999999999999999999973
|
| >3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-28 Score=323.59 Aligned_cols=370 Identities=33% Similarity=0.531 Sum_probs=289.8
Q ss_pred ceeeeccC-CCCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHH
Q psy15216 1393 YTNIVFKD-ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAI 1471 (2602)
Q Consensus 1393 ~~~v~L~~-~~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al 1471 (2602)
...++|+. +..+.++.+++++.+.+...+++|+. .|..+........++|+++++++|+++++|++|+|+|+|+++++
T Consensus 17 ~~~~~Ld~~~~~~~~~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~ 95 (432)
T 3a9z_A 17 NRKVYMDYNATTPLEPEVIQAVTEAMKEAWGNPSS-SYVAGRKAKDIINTARASLAKMIGGKPQDIIFTSGGTESNNLVI 95 (432)
T ss_dssp -CCEECBTTTCCCCCHHHHHHHHHHHHHCCSCTTC-SSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHHHHHHH
T ss_pred CCcEEeeCCccCCCCHHHHHHHHHHHHHhcCCCcc-CcHHHHHHHHHHHHHHHHHHHHcCCCcCeEEEeCChHHHHHHHH
Confidence 45678874 34578899999999999877778875 56666667788899999999999998889999999999999999
Q ss_pred Hhhhhhhc----cCCC-------------EEEEcCCCCcchHHHHHHH-HhCCcEEEEeccCC-CCCcChhHHHhhccCC
Q psy15216 1472 KGAAHFYK----KRGK-------------HIITVQTEHKSVLDSIRKL-ENDGFRVTYLKPKN-NGLITLSQLEEKICSD 1532 (2602)
Q Consensus 1472 ~~l~~~~~----~~gd-------------~Vlv~~~~~~s~~~~~~~~-~~~G~~v~~v~~~~-~~~id~d~l~~~i~~~ 1532 (2602)
.++....+ ++|| +|+++..+|+++..++..+ ...|++++.++.++ ++.+|+++|+++++++
T Consensus 96 ~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~i~~~ 175 (432)
T 3a9z_A 96 HSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSKVNGQVEVEDILAAVRPT 175 (432)
T ss_dssp HHHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEECCCTTTSSCCHHHHHHTCCTT
T ss_pred HHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCcEEEEEecCcccCCcCHHHHHHhccCC
Confidence 98852111 3785 5555555566666666554 44599999999876 7789999999999999
Q ss_pred ceEEEEeccccccccccChHHHHHHhhhcC----------CEEEEecccccCcccccCCCCCccEEEEccccccCCCceE
Q psy15216 1533 TILVSVMLVNNEIGVIQPILEIGELCRSKG----------VIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIG 1602 (2602)
Q Consensus 1533 t~lv~l~~~~n~tG~~~~l~~I~~ia~~~g----------i~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K~~gp~G~G 1602 (2602)
|++|++++++||||.++|+++|.++|++|| +++|+|++|+.|..++++..+++|++++|+||++||+ +|
T Consensus 176 ~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~~~~~~~livDea~~~~~~~~~~~~~~~d~~~~s~~K~~g~~-~G 254 (432)
T 3a9z_A 176 TCLVTIMLANNETGVIMPISEISRRIKALNQIRAASGLPRVLVHTDAAQALGKRRVDVEDLGVDFLTIVGHKFYGPR-IG 254 (432)
T ss_dssp EEEEECCSBCTTTCBBCCHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTTTTTSCCCHHHHCCSEEEEEGGGTTCCS-CE
T ss_pred ceEEEEECcccCcccccCHHHHHHHHHhcCcccccccCCceEEEEEchhhhCCcccChhhcCCCEEEEehhHhcCCc-ce
Confidence 999999999999999999999999999999 9999999999887776665567899999999988987 99
Q ss_pred EEEEecCC-CCccccccccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc--EEEe
Q psy15216 1603 ALYIRRNP-RTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEE--IYIN 1679 (2602)
Q Consensus 1603 ~l~~~~~~-~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g--l~i~ 1679 (2602)
+++++++. ...+.+.+.++.....+..++++...++++.+++++...++++..+++.++++++.+.|.+ +++ +.+.
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~ 333 (432)
T 3a9z_A 255 ALYVRGVGKLTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAADLVSENCETYEAHMRDIRDYLEERLEA-EFGKRIHLN 333 (432)
T ss_dssp EEEETTBTTTBCCCCSCCSSCGGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHGGGEEES
T ss_pred EEEEccccccCCcCceeecCCccccccCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh-ccCCcEEEe
Confidence 99999876 5567776666665566778899999999998999876667889999999999999999987 434 4444
Q ss_pred CCC--CCCCCceEEEEEecC--CcHHHHHhcCCEEEccccccCCCC-CChhHHHHHcCCCccccCCeEEEecCCCCCHHH
Q psy15216 1680 GDM--NNRIPHNLNISFNFI--EGESLLMAIKDIAVSSGSACTSAS-LEPSYVLRALGCNDELAHSSIRFTIGRFTTEKE 1754 (2602)
Q Consensus 1680 ~~~--~~~~~~~~~~~~~~~--~~~~~~~~L~gI~v~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~ed 1754 (2602)
++. ....+....|.++.. +...+...+.++.++.|..|.... ..+...+..+|.......+++|||++.++|.+|
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~l~~~g~~~~~~~~~iRis~~~~~t~ee 413 (432)
T 3a9z_A 334 SRFPGVERLPNTCNFSIQGSQLRGYMVLAQCQTLLASVGASCHSDHEDRPSPVLLSCGIPVDVARNAVRLSVGRSTTRAE 413 (432)
T ss_dssp SCCTTCCBCTTEEEEEECSTTCCHHHHHHHCSSEECBSSCGGGGGGTTSCCHHHHHTTCCHHHHTTEEEEECCTTCCHHH
T ss_pred CCCCcccCCCCEEEEEeCCCCCcHHHHHHHhcCeEEeccccccCCCCCCccHHHHhcCCCccccCceEEEEcCCCCCHHH
Confidence 431 223455677777642 455676777899999988775421 012234445565432335899999999999999
Q ss_pred HHHHHHHHHHh
Q psy15216 1755 IDFTIKLLKMK 1765 (2602)
Q Consensus 1755 id~li~~L~~~ 1765 (2602)
+++++++|++.
T Consensus 414 i~~~~~~l~~~ 424 (432)
T 3a9z_A 414 VDLIVQDLKQA 424 (432)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999973
|
| >1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.9e-28 Score=316.16 Aligned_cols=340 Identities=19% Similarity=0.266 Sum_probs=276.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhhc-CCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcc
Q psy15216 1 MDYSATTPIDPRVVDKMIPYLRVQF-GNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAA 79 (2602)
Q Consensus 1 Ld~a~~~~~p~~v~~a~~~~l~~~~-~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~ 79 (2602)
||+++.++.|+.+++++.+.+.... .++.. +..........+++++.+++++|+++++|++++|+|+|+++++.++.
T Consensus 20 l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~--~~~y~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~ 97 (390)
T 1elu_A 20 FNFGGQGILPTVALEAITAMYGYLQENGPFS--IAANQHIQQLIAQLRQALAETFNVDPNTITITDNVTTGCDIVLWGLD 97 (390)
T ss_dssp CCTTTCCCCCHHHHHHHHHHHHHHHHHCSSS--HHHHHHHHHHHHHHHHHHHHHTTSCGGGEEEESSHHHHHHHHHHHSC
T ss_pred ecCCccCCCCHHHHHHHHHHHHHHhccCCcc--hhhHHHHHHHHHHHHHHHHHHcCCCHHHEEEeCChHHHHHHHHhCCC
Confidence 6788888889999999999887532 12221 11111224678899999999999988899999999999999999983
Q ss_pred cccccCCCEEEEcCCCCcccHHHHHH-HHhCCcEEEEeccC--CCCccChHHHHhhccCCceEEEEecccCcccccccHH
Q psy15216 80 HFYKKRGKHIITVQTEHKSVLDSIRK-LENDGFRVTYLKPK--NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPIL 156 (2602)
Q Consensus 80 ~~~~~~gd~Vlv~~~~~~s~~~~~~~-~~~~G~~v~~v~~~--~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~ 156 (2602)
+++||+|+++.++|+++...+.. ++..|++++.++.+ .++.+|+++|++++++++++|++++++||||.++|++
T Consensus 98 ---~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~ 174 (390)
T 1elu_A 98 ---WHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLGPKTRLVILSHLLWNTGQVLPLA 174 (390)
T ss_dssp ---CCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCCTTEEEEEEESBCTTTCCBCCHH
T ss_pred ---CCCCCEEEEecCcccHHHHHHHHHHHHhCcEEEEEcCCCCCCccchHHHHHHhcCCCceEEEEeccccCCceecCHH
Confidence 27999999999999998776543 34459999999986 5778999999999999999999999999999999999
Q ss_pred HHHHHHH----hcCCEEEEecccccccccccCCCCCccEEEecccc-ccCCCCcEEEEEecCCCCcccceecCCCc----
Q psy15216 157 EIGELCR----SKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGH---- 227 (2602)
Q Consensus 157 ~I~~la~----~~g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K-~~Gp~G~G~l~~~~~~~~~l~~~~~g~~~---- 227 (2602)
+|.++|+ +||+++|+|++|+.|..++++...++|++++|+|| ++|+.|+|++++++++++.+.+...+|+.
T Consensus 175 ~i~~l~~~~~~~~~~~li~Dea~~~g~~~~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~~~~g~~~~~~~ 254 (390)
T 1elu_A 175 EIMAVCRRHQGNYPVRVLVDGAQSAGSLPLDFSRLEVDYYAFTGHKWFAGPAGVGGLYIHGDCLGEINPTYVGWRSITYG 254 (390)
T ss_dssp HHHHHHHHCCSSSCCEEEEECTTTBTTBCCCTTTSCCSEEEEESSSTTCCCTTCEEEEECTTTGGGCCCCSCCTTTEEEC
T ss_pred HHHHHHhhhhhhcCcEEEEEcccccCCcCCChhhcCCCEEEccccccccCCCceEEEEECHHhHhhcCCccccCCccccc
Confidence 9999999 99999999999999988888777789999999999 88899999999999988888776555432
Q ss_pred -----------cccccccCcchhHHHHHHHHHHHHHH-h-HHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceE
Q psy15216 228 -----------EYGLRSGTLATHQIVGMGEAFRLARI-E-MKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNL 294 (2602)
Q Consensus 228 -----------~~~~~~gt~~~~~~~al~~al~~~~~-~-~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~ 294 (2602)
..++..++++...+.++.++++.... + +++..++++++++++.+.|.+ +++++++.+.. ....++
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~-~~~~~~ 332 (390)
T 1elu_A 255 AKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQ-LPHVHCLATSA-PQAGLV 332 (390)
T ss_dssp TTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH-STTEEESCSSC-CSSSEE
T ss_pred ccCcccccccchHhhCCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHh-cCCcEEecCcc-ccccEE
Confidence 12455688888888888888885443 3 888999999999999999988 67998876421 123455
Q ss_pred EEEEc-ccChhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 295 NISFN-FIEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 295 ~~~~~-~~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
.+.++ ..+..++.+.| +||.++++. . .+++||+++.+++++|+++++++|++.
T Consensus 333 ~~~~~~~~~~~~~~~~l~~~gi~v~~~~---~-------------------~~~iRis~~~~~~~~~i~~~~~~l~~~ 388 (390)
T 1elu_A 333 SFTVDSPLGHRAIVQKLEEQRIYLRTIA---D-------------------PDCIRACCHYITDEEEINHLLARLADF 388 (390)
T ss_dssp EEEECSSSCHHHHHHHHHHTTEECEEET---T-------------------TTEEEEECCTTCCHHHHHHHHHHHTTC
T ss_pred EEEcCCCCCHHHHHHHHHHCCEEEEecC---C-------------------CCeEEEecccCCCHHHHHHHHHHHHhh
Confidence 55564 34566777777 799988764 1 278999999999999999999999853
|
| >3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.6e-30 Score=326.10 Aligned_cols=333 Identities=12% Similarity=0.081 Sum_probs=249.8
Q ss_pred eeecc-CCCCCCCHHHHHHHHHHHhhccCCCCCc--cchhHHHHHHHHHHHHHHHHHHhCCCC-CcEEE-eCCHHHHHHH
Q psy15216 1395 NIVFK-DATTPIDPRVVDKMIPYLRVQFGNPASR--NHIYGWTAEKAIEKARNEVAQLIYADP-REIIW-TSGATESNNL 1469 (2602)
Q Consensus 1395 ~v~L~-~~~~~~~~~v~eal~~~l~~~~~np~~~--~~~~~~~~~~~~~~lr~~ia~~~g~~~-~~iv~-t~gaT~al~~ 1469 (2602)
.+|++ .++++.|+.+++++.+++.+.++||.+. .+..+..+...++++|+.+++++|+++ ++|+| |+|+|+++++
T Consensus 27 ~~yl~~agpt~~p~~V~~a~~~~~~~~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~ 106 (386)
T 3qm2_A 27 QVFNFSSGPAMLPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGGRGQFAG 106 (386)
T ss_dssp CCEECCSSSCCCCHHHHHHHTCC-----------------------CCHHHHHHHHHHHTCCTTEEEEEEESCTTHHHHH
T ss_pred cCccccCCCCCCCHHHHHHHHHHHHhccccCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHH
Confidence 36775 5778999999999999888777777542 233466677889999999999999954 46888 6999999999
Q ss_pred HHHhhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccC--CCCC-cChhHHHhhccCCceEEEEeccccccc
Q psy15216 1470 AIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK--NNGL-ITLSQLEEKICSDTILVSVMLVNNEIG 1546 (2602)
Q Consensus 1470 al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~--~~~~-id~d~l~~~i~~~t~lv~l~~~~n~tG 1546 (2602)
++.++. ++||++++...++.+. .+...+++.| ++.+++++ .+|. +++++++++++++|++|+++|.+|.||
T Consensus 107 ai~~l~----~~gd~v~~~~~~~~~~-~~~~~a~~~G-~v~~v~~~~~~~G~~~~~~~~~~~l~~~t~lV~~~h~et~tG 180 (386)
T 3qm2_A 107 VPLNLL----GDKTTADYVDAGYWAA-SAIKEAKKYC-APQIIDAKITVDGKRAVKPMREWQLSDNAAYLHYCPNETIDG 180 (386)
T ss_dssp HHHHHC----TTCCEEEEEESSHHHH-HHHHHHTTTS-EEEEEECEEEETTEEEECCGGGCCCCTTCSCEEECSEETTTT
T ss_pred HHHhcc----CCCCeEEEEeCCHHHH-HHHHHHHHhC-CeEEEecCcccCCCCCCchHHHhhcCCCCcEEEEECCcCCcC
Confidence 999986 7899988777667664 3445556668 89999988 5565 888999999999999999999999999
Q ss_pred cc-cChHHHHHHhhhcCCEEEEecccccCcccccCCCCCccEEEEccccccCCCceEEEEEecCCCCccccccc-----c
Q psy15216 1547 VI-QPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIH-----G 1620 (2602)
Q Consensus 1547 ~~-~~l~~I~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K~~gp~G~G~l~~~~~~~~~l~~~~~-----g 1620 (2602)
++ .|+++|. +|+++++|++|++|..|+|+.+++ ++++|+||++||+|+|++++++++.+.+.+... +
T Consensus 181 ~~i~pi~~i~-----~g~~~~vDa~qs~g~~pidv~~~~--~~~~s~hK~lGP~G~g~l~v~~~~~~~~~~~~p~~~~~~ 253 (386)
T 3qm2_A 181 IAIDETPDFG-----PEVVVTADFSSTILSAPLDVSRYG--VIYAGAQKNIGPAGLTLVIVREDLLGKAHESCPSILDYT 253 (386)
T ss_dssp EECCCCCCCC-----TTCCEEEECTTTTTSSCCCGGGCS--EEEEETTTTTCCTTEEEEEEEGGGCSCCCTTSCGGGCHH
T ss_pred EecCchhhhc-----CCCEEEEEcccccCCCCCCccccC--EEEEecccccCCCccEEEEECHHHHhhhcccCCcHHHHH
Confidence 96 8999885 799999999999999999999885 577999998899999999999998877665322 1
Q ss_pred CCccccCCCCCcchhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhcCCcE-EEeCCCCCCCCceEEEEEec-
Q psy15216 1621 GGHEYGLRSGTLATHQIVGMGEAFRLARI--EMKEELKRILFLQKRLYNGLMESIEEI-YINGDMNNRIPHNLNISFNF- 1696 (2602)
Q Consensus 1621 ~~~~~~~~~gt~~~~~~~al~~aL~~~~~--~~~~~~~~~~~l~~~l~~~L~~~~~gl-~i~~~~~~~~~~~~~~~~~~- 1696 (2602)
...+.+.+.+|++++.++++.+|++++.. +++++.++..+++++++++|.+ + ++ ....++..+.+..+.|.++.
T Consensus 254 ~~~~~~~~~gTp~v~~i~~l~~Al~~~~~~gG~~~i~~~~~~l~~~l~~~l~~-~-~~~~~~~~~~~rs~~iv~f~~~~~ 331 (386)
T 3qm2_A 254 VLNDNDSMFNTPPTFAWYLSGLVFKWLKAQGGVAAMHKINQQKAELLYGVIDN-S-DFYRNDVAQANRSRMNVPFQLADN 331 (386)
T ss_dssp HHHHC-------CCSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHT-C-SSEECCBCGGGBCSSEEEEEESSG
T ss_pred HHhhcCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH-C-CCcccCCCHHHcCceEEEEECCCc
Confidence 12234556789999999999999996654 6999999999999999999987 4 44 33223344566777888874
Q ss_pred -CCcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1697 -IEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1697 -~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
.+ ..+...| +||.++.|..+. +.+|+|++.+||.+|||+++++|++
T Consensus 332 ~~~-~~~~~~L~~~gI~~~~g~~~~---------------------~~iRiS~~~~~t~edId~l~~~l~~ 380 (386)
T 3qm2_A 332 TLD-KVFLEESFAAGLHALKGHRVV---------------------GGMRASIYNAMPIEGVKALTDFMID 380 (386)
T ss_dssp GGH-HHHHHHHHHTTEECCBCCTTT---------------------CSEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ccc-HHHHHHHHHCCCEEeCCCCCc---------------------CeEEEEcCCCCCHHHHHHHHHHHHH
Confidence 23 4555555 799988776542 4599999999999999999999997
|
| >1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-28 Score=314.65 Aligned_cols=326 Identities=12% Similarity=0.080 Sum_probs=265.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhccc
Q psy15216 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAH 80 (2602)
Q Consensus 1 Ld~a~~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~ 80 (2602)
|.+++.+++|+.+++++.+.+.. + .++......+++|+++++++|++++++++|+|+|+|+++++.++.
T Consensus 4 l~~~~p~~~~~~v~~a~~~~~~~-----~-----~~~~~~~~~~~l~~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~- 72 (352)
T 1iug_A 4 LLTPGPVRLHPKALEALARPQLH-----H-----RTEAAREVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNLF- 72 (352)
T ss_dssp ECSSSSCCCCHHHHHHHHSCCCC-----T-----TSHHHHHHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHHC-
T ss_pred cccCCCCCCCHHHHHHhccCCCC-----c-----cCHHHHHHHHHHHHHHHHHhCCCCceEEEcCchHHHHHHHHHhcc-
Confidence 35677789999999998876531 1 233445678899999999999988899999999999999999987
Q ss_pred ccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHH
Q psy15216 81 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGE 160 (2602)
Q Consensus 81 ~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~ 160 (2602)
++||+|+++.++|+++. ....++..|++++.++.++++.+|++++++ +++++|++++++||||.+.|+++|.+
T Consensus 73 ---~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~---~~~~~v~~~~~~nptG~~~~l~~i~~ 145 (352)
T 1iug_A 73 ---APGERVLVPVYGKFSER-FYEIALEAGLVVERLDYPYGDTPRPEDVAK---EGYAGLLLVHSETSTGALADLPALAR 145 (352)
T ss_dssp ---CTTCEEEEEECSHHHHH-HHHHHHHTTCEEEEEECCTTCCCCTTTSCC---SSCSEEEEESEETTTTEECCHHHHHH
T ss_pred ---CCCCeEEEEeCCchhHH-HHHHHHHcCCceEEEeCCCCCCCCHHHHhc---cCCcEEEEEEecCCcceecCHHHHHH
Confidence 79999999999999986 555556679999999998888899999987 68999999999999999999999999
Q ss_pred HHHhc--CCEEEEecccccccccccCCCCCccEEEecccc-ccCCCCcEEEEEecCCCCcccceecCCC---------cc
Q psy15216 161 LCRSK--GVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGG---------HE 228 (2602)
Q Consensus 161 la~~~--g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K-~~Gp~G~G~l~~~~~~~~~l~~~~~g~~---------~~ 228 (2602)
+|++| |+++|+|++|+++..++++..+++|++++|+|| ++||.|+|+++++++.++.+.+ .++. ..
T Consensus 146 l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 223 (352)
T 1iug_A 146 AFKEKNPEGLVGADMVTSLLVGEVALEAMGVDAAASGSQKGLMCPPGLGFVALSPRALERLKP--RGYYLDLARELKAQK 223 (352)
T ss_dssp HHHHHCTTCEEEEECTTTBTTBCCCSGGGTCSEEEEESSSTTCCCSCEEEEEECHHHHHTCCC--CSSTTCHHHHHHHHT
T ss_pred HHHhhCCCCEEEEECCccccCcceeccccCeeEEEecCcccccCCCceeEEEECHHHHHHhhC--CCceeeHHHHHhhcc
Confidence 99999 999999999998888777766778999999999 8889999999999876655433 0100 11
Q ss_pred ccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEc-ccChhHHH
Q psy15216 229 YGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN-FIEGESLL 307 (2602)
Q Consensus 229 ~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~-~~~~~~~~ 307 (2602)
.....++++...+.++.++++.....+++..++++++++++.+.|.+ + ++++..+. ..+.++.+.++ ..+..++.
T Consensus 224 ~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 299 (352)
T 1iug_A 224 EGESAWTPAINLVLAVAAVLEEVLPRLEEHLALKAWQNALLYGVGEE-G-GLRPVPKR--FSPAVAAFYLPEGVPYARVK 299 (352)
T ss_dssp TTCCSSCCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHH-T-TCEESCSS--BCTTCEEEECCTTCCHHHHH
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-C-CCcccccc--cCCeEEEEEcCCCCCHHHHH
Confidence 23446788888888888899865555788999999999999999988 5 88877543 23455666665 45667777
Q ss_pred HHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 308 MAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 308 ~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
+.| +||.++++..+. ..+++||+++.+++++|+++++++|++.
T Consensus 300 ~~l~~~gi~v~~~~~~~-------------------~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 344 (352)
T 1iug_A 300 EAFAQRGAVIAGGQGPL-------------------KGKVFRLSLMGAYDRYEALGVAGMFREV 344 (352)
T ss_dssp HHHHTTTEECEECCGGG-------------------TTTEEEECCCSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHCCEEEEeCCCcc-------------------CCCEEEEEccccCCHHHHHHHHHHHHHH
Confidence 777 799998776321 1378999999999999999999999864
|
| >3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.96 E-value=6.1e-29 Score=314.24 Aligned_cols=327 Identities=13% Similarity=0.043 Sum_probs=256.6
Q ss_pred CCCCCCCCHHHHHHHHHHHhhhcCCCCCCCc---chhhhHHHHHHHHHHHHHHHhCCC-CCcEEE-eCCHHHHHHHHHHh
Q psy15216 3 YSATTPIDPRVVDKMIPYLRVQFGNPASRNH---IYGWTAEKAIEKARNEVAQLIYAD-PREIIW-TSGATESNNLAIKG 77 (2602)
Q Consensus 3 ~a~~~~~p~~v~~a~~~~l~~~~~~p~~~~~---~~~~~~~~~~~~~r~~lA~~~g~~-~~~Iv~-t~g~T~al~~~~~~ 77 (2602)
++++++.|+.|++++.+++...++||.+ .+ ..+..+...++++|+.+++++|++ +.+|+| |+|+|+++++++.+
T Consensus 10 ~pgpt~~~~~V~~a~~~~~~~~~~~~~s-~~~~~hr~~~~~~~~~~~r~~la~ll~~~~~~~v~f~t~~~T~a~n~~~~~ 88 (361)
T 3m5u_A 10 SAGPSTLPLEILEQAQKELCDYQGRGYS-IMEISHRTKVFEEVHFGAQEKAKKLYELNDDYEVLFLQGGASLQFAMIPMN 88 (361)
T ss_dssp CSSSCCCCHHHHHHHHHTSSSGGGSSSC-GGGSCSSSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHH
T ss_pred cCCCCCCcHHHHHHHHHHHHhcccCCce-eeccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCcHHHHHHHHHHh
Confidence 4678899999999999998877777654 22 235567789999999999999996 457888 99999999999998
Q ss_pred cccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCc--cChHHHHhhccCCceEEEEecccCcccccccH
Q psy15216 78 AAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGL--ITLSQLEEKICSDTILVSVMLVNNEIGVIQPI 155 (2602)
Q Consensus 78 l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~--ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l 155 (2602)
+. +||++++....+.+. .+...+++.|+++..+++++++. ++++. + |+++|++|+++|.+|.||+++|.
T Consensus 89 ~~-----~~~~~~~i~~~~~~~-~~~~~a~~~G~~v~~~~~~~~g~~~~~~~~--~-l~~~t~lv~~~~~e~~tG~~~~~ 159 (361)
T 3m5u_A 89 LA-----LNGVCEYANTGVWTK-KAIKEAQILGVNVKTVASSEESNFDHIPRV--E-FSDNADYAYICSNNTIYGTQYQN 159 (361)
T ss_dssp HC-----CSSCEEEEECSHHHH-HHHHHHHHTTCCEEEEEECTTTTSCSCCCC--C-CCTTSSEEEEESEETTTTEECSS
T ss_pred cC-----CCCeEEEEeCCHHHH-HHHHHHHHcCCceEEEecccCcCCCcCChh--h-cCCCCCEEEEeCCCCCcceeCCc
Confidence 86 566542211122232 34455677899999999988774 56776 4 89999999999999999999873
Q ss_pred HHHHHHHHhcCCEEEEecccccccccccCCCCCccEEEeccccccCCCCcEEEEEecCCCCcccc----eecCCCc--cc
Q psy15216 156 LEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEA----QIHGGGH--EY 229 (2602)
Q Consensus 156 ~~I~~la~~~g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K~~Gp~G~G~l~~~~~~~~~l~~----~~~g~~~--~~ 229 (2602)
+++ +|+++++|++|++|..|+|+++ .|++++|+||++||+|+|++++++++.+.+.| .+..+.. +.
T Consensus 160 -----i~~-~~~~~~vD~~q~~g~~~id~~~--~d~~~~s~~K~~gp~G~g~l~~~~~~~~~~~~~~~p~~~~~~~~~~~ 231 (361)
T 3m5u_A 160 -----YPK-TKTPLIVDASSDFFSRKVDFSN--IALFYGGVQKNAGISGLSCIFIRKDMLERSKNKQIPSMLNYLTHAEN 231 (361)
T ss_dssp -----CCC-CSSCEEEECGGGTTSSCCCCTT--EEEEEEETTTTSSCTTCEEEEEEHHHHHHHHTCCCCGGGCHHHHHHT
T ss_pred -----ccc-cCCEEEEEcccccCCCCCCccc--CCEEEEechhccCCCccEEEEEcHHHHhhhcCCCCCceeehHHHhhc
Confidence 444 4999999999999999999985 58999999998899999999999988766554 2211111 23
Q ss_pred cccccCcchhHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHhhccCce-EEeCCCCCCCCceEEEEEcc-cCh-h
Q psy15216 230 GLRSGTLATHQIVGMGEAFRLARI--EMKEELKRILFLQKRLYNGLMESIEEI-YINGDMNNRIPHNLNISFNF-IEG-E 304 (2602)
Q Consensus 230 ~~~~gt~~~~~~~al~~al~~~~~--~~~~~~~~~~~l~~~l~~~L~~~~~g~-~l~~~~~~~~~~~~~~~~~~-~~~-~ 304 (2602)
....+||++.+++++.+|+++..+ +++++.++..++++++++.|.+ ++++ .++.++..+.+.++.|.++. ... .
T Consensus 232 ~~~~~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l~~~L~~-~~g~~~~~~~~~~rs~~ivsf~~~~~~~~~~ 310 (361)
T 3m5u_A 232 QSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYECIDL-SNGFYKGHADKKDRSLMNVSFNIAKNKDLEP 310 (361)
T ss_dssp TTCSSCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHT-STTSEEESSCGGGBCSSEEEEEESSCTTHHH
T ss_pred CCCCCCccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHH-CCCeeeccCCHHHcCCeEEEEECCCchhhhH
Confidence 445689999999999999997664 5999999999999999999988 6765 66555555566777888875 121 3
Q ss_pred HHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 305 SLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 305 ~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
+++..| +||.++.|..+. +.+|+|++.|+|.+||++++++|++.
T Consensus 311 ~~~~~L~~~gI~~~~g~~~~---------------------g~iRiS~~~~~t~edId~l~~al~~~ 356 (361)
T 3m5u_A 311 LFVKEAEEAGMIGLKGHRIL---------------------GGIRASIYNALNLDQVKTLCEFMKEF 356 (361)
T ss_dssp HHHHHHHHTTEECCBCCTTT---------------------CSEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCEEecCCCcc---------------------CeEEEEccCCCCHHHHHHHHHHHHHH
Confidence 566665 799987765431 45999999999999999999999964
|
| >2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-28 Score=321.17 Aligned_cols=333 Identities=14% Similarity=0.111 Sum_probs=267.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhccc
Q psy15216 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAH 80 (2602)
Q Consensus 1 Ld~a~~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~ 80 (2602)
||+++.+++|+.+++++.+.+.. + .++......+++|+++++++|++++++++|+|+|+|+++++.++.
T Consensus 12 l~~~~~~~~~~~v~~a~~~~~~~-----~-----~~~~~~~~~~~l~~~la~~~g~~~~~v~~t~g~t~a~~~~~~~~~- 80 (392)
T 2z9v_A 12 TLTAGPVNAYPEVLRGLGRTVLY-----D-----YDPAFQLLYEKVVDKAQKAMRLSNKPVILHGEPVLGLEAAAASLI- 80 (392)
T ss_dssp ECSSSCCCCCHHHHHHTTSCCCC-----T-----TSHHHHHHHHHHHHHHHHHTTCSSCCEEESSCTHHHHHHHHHHHC-
T ss_pred eecCCCcCCCHHHHHHHhccccc-----c-----ccHHHHHHHHHHHHHHHHHhCCCCCEEEEeCCchHHHHHHHHHhc-
Confidence 68888889999999988776532 1 123455678899999999999988899999999999999999986
Q ss_pred ccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhc--cCCceEEEEecccCcccccccHHHH
Q psy15216 81 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKI--CSDTILVSVMLVNNEIGVIQPILEI 158 (2602)
Q Consensus 81 ~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i--~~~tklv~i~~~~npTG~~~~l~~I 158 (2602)
++||+|+++.++|+++. +...++..|++++.+++++++.+|+++|++++ ++++++|++++++||||.++|+++|
T Consensus 81 ---~~gd~Vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~i 156 (392)
T 2z9v_A 81 ---SPDDVVLNLASGVYGKG-FGYWAKRYSPHLLEIEVPYNEAIDPQAVADMLKAHPEITVVSVCHHDTPSGTINPIDAI 156 (392)
T ss_dssp ---CTTCCEEEEESSHHHHH-HHHHHHHHCSCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEESEEGGGTEECCHHHH
T ss_pred ---CCCCEEEEecCCcccHH-HHHHHHHcCCceEEeeCCCCCCCCHHHHHHHHhcCCCCcEEEEeccCCCCceeccHHHH
Confidence 79999999999999874 44444556999999999888889999999999 4689999999999999999999999
Q ss_pred HHHHHhcCCEEEEecccccccccccCCCCCccEEEecccc-ccCCCCcEEEEEecCCCCccccee-------cCC-----
Q psy15216 159 GELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQI-------HGG----- 225 (2602)
Q Consensus 159 ~~la~~~g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K-~~Gp~G~G~l~~~~~~~~~l~~~~-------~g~----- 225 (2602)
.++|++||+++|+|++|+.|..++++..+++|++++|+|| ++|++|+|++++++++++.+.+.. .++
T Consensus 157 ~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~sK~~~~~~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~ 236 (392)
T 2z9v_A 157 GALVSAHGAYLIVDAVSSFGGMKTHPEDCKADIYVTGPNKCLGAPPGLTMMGVSERAWAKMKANPLAPRASMLSIVDWEN 236 (392)
T ss_dssp HHHHHHTTCEEEEECTTTBTTBSCCGGGGTCSEEEECSSSTTCCCSCCEEEEECHHHHHHHHTCTTSCCSSTTCSGGGTT
T ss_pred HHHHHHcCCeEEEEcccccCCcccccccccceEEEecCcccccCCCceeEEEECHHHHHHhhhccCCCCceeccHHHHHh
Confidence 9999999999999999999888777777788999999999 778999999999988766664422 110
Q ss_pred -CccccccccCcchhHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHhhccCceEEeCCCC-CCCCceEEEEEc-cc
Q psy15216 226 -GHEYGLRSGTLATHQIVGMGEAFRLARIE-MKEELKRILFLQKRLYNGLMESIEEIYINGDMN-NRIPHNLNISFN-FI 301 (2602)
Q Consensus 226 -~~~~~~~~gt~~~~~~~al~~al~~~~~~-~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~-~~~~~~~~~~~~-~~ 301 (2602)
.....+..++++..+++++.++++..... +++..+++.++++++.+.|.+ + ++.+..++. ...+.++.+.++ ..
T Consensus 237 ~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~~~~~~~~ 314 (392)
T 2z9v_A 237 AWSRDKPFPFTPSVSEINGLDVALDLYLNEGPEAVWARHALTAKAMRAGVTA-M-GLSVWAASDSIASPTTTAVRTPDGV 314 (392)
T ss_dssp TTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-T-TCCBSSSSGGGBCTTEEEEECCTTC
T ss_pred hhcccCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH-c-CCeeccCCccccCCceEEEECCCCC
Confidence 01233456888999888888888865444 788999999999999999987 4 777765322 223455556664 45
Q ss_pred ChhHHHHHh--C-CeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEec-CCCCCHHHHHHHHHHHHhh
Q psy15216 302 EGESLLMAI--K-DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTI-GRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 302 ~~~~~~~~L--~-gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~-~~~~t~edid~li~~L~~~ 369 (2602)
+..++...| + ||.+++|..+.. .+++||++ +++++++|+++++++|++.
T Consensus 315 ~~~~l~~~L~~~~gi~v~~g~~~~~-------------------~~~lRi~~~~~~~~~~~i~~~~~~l~~~ 367 (392)
T 2z9v_A 315 DEKALRQAARARYGVVFSSGRGETL-------------------GKLTRIGHMGPTAQPIYAIAALTALGGA 367 (392)
T ss_dssp CHHHHHHHHHHHHCEECEECCGGGT-------------------TTEEEEECCGGGCSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCEEEecCCCCCC-------------------CCeEEEeCcccccCHHHHHHHHHHHHHH
Confidence 667777777 5 999988764321 37899996 4488999999999999864
|
| >3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-28 Score=327.25 Aligned_cols=343 Identities=15% Similarity=0.161 Sum_probs=269.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhhcCCCCCCCcchh-hhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcc
Q psy15216 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYG-WTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAA 79 (2602)
Q Consensus 1 Ld~a~~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~-~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~ 79 (2602)
||+++.++.|+.+.+++.+.+.. |.+.....+..+ ..+....+++++++++++|+++++|++|+|+|+++++++.++.
T Consensus 71 ld~~~~g~~p~~v~~~i~~~l~~-~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~t~g~t~al~~~~~~~~ 149 (465)
T 3e9k_A 71 FLGNSLGLQPKMVKTYLEEELDK-WAKIAAYGHEVGKRPWITGDESIVGLMKDIVGANEKEIALMNALTVNLHLLMLSFF 149 (465)
T ss_dssp CBTTTSCCEETTHHHHHHHHHHH-HHHHGGGGGTSSSSCGGGTTHHHHGGGHHHHTCCGGGEEECSCHHHHHHHHHHHHC
T ss_pred ecCCccCCChHHHHHHHHHHHHH-HHhhCCcccccCCccHHHhHHHHHHHHHHHcCCCcCCEEEECCHHHHHHHHHHHhc
Confidence 68889899888898888877743 221111001100 1122345778999999999998999999999999999999986
Q ss_pred cccccCCCEEEEcCCCCcccHHHHHH-HHhCCcEE-----EEeccCCCCccChHHHHhhcc---CCceEEEEecccCccc
Q psy15216 80 HFYKKRGKHIITVQTEHKSVLDSIRK-LENDGFRV-----TYLKPKNNGLITLSQLEEKIC---SDTILVSVMLVNNEIG 150 (2602)
Q Consensus 80 ~~~~~~gd~Vlv~~~~~~s~~~~~~~-~~~~G~~v-----~~v~~~~~~~ld~e~l~~~i~---~~tklv~i~~~~npTG 150 (2602)
. ...+|++|+++.++|+++...+.. ++..|+++ ..++.+.++.+|+++|+++|+ +++++|++++++||||
T Consensus 150 ~-~~~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~lv~~~~~~n~tG 228 (465)
T 3e9k_A 150 K-PTPKRYKILLEAKAFPSDHYAIESQLQLHGLNIEESMRMIKPREGEETLRIEDILEVIEKEGDSIAVILFSGVHFYTG 228 (465)
T ss_dssp C-CCSSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHHHEEEECCCTTCSSCCHHHHHHHHHHHGGGEEEEEEESBCTTTC
T ss_pred c-ccCCCCEEEEcCCcCCchHHHHHHHHHHcCCcceeeeEEEecCCCCCccCHHHHHHHHHhcCCCeEEEEEeCcccCcc
Confidence 1 113456699999999998876663 46678774 445556678899999999996 6899999999999999
Q ss_pred ccccHHHHHHHHHhcCCEEEEecccccccccccCCCCCccEEEecccccc--CCCCcEEEEEecCCCCcccceecCCCc-
Q psy15216 151 VIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIY--GPKGIGALYIRRNPRTRIEAQIHGGGH- 227 (2602)
Q Consensus 151 ~~~~l~~I~~la~~~g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K~~--Gp~G~G~l~~~~~~~~~l~~~~~g~~~- 227 (2602)
.+.|+++|.++|++||+++++|++|+.|..++++.++++|++++|+||++ ||.|+|++++++++.+.+.+...||..
T Consensus 229 ~~~~l~~i~~la~~~g~~vi~D~a~~~g~~~~~~~~~~~D~~~~s~~K~l~~gp~~~g~l~~~~~~~~~~~~~~~g~~~~ 308 (465)
T 3e9k_A 229 QHFNIPAITKAGQAKGCYVGFDLAHAVGNVELYLHDWGVDFACWCSYKYLNAGAGGIAGAFIHEKHAHTIKPALVGWFGH 308 (465)
T ss_dssp BBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCCEEEECSSSTTCCCTTCCCEEEECGGGTTTSCCSSCCGGGB
T ss_pred eeecHHHHHHHHHHcCCEEEEEhhhhcCCcCCchhhcCCCEEEECcccccccCCCceEEEEEcHHHHhhcCCcccCccCC
Confidence 99999999999999999999999999999999888889999999999966 677899999999988888776655322
Q ss_pred -----------------cccccccCcchhHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHhhcc---------Cce
Q psy15216 228 -----------------EYGLRSGTLATHQIVGMGEAFRLARI-EMKEELKRILFLQKRLYNGLMESI---------EEI 280 (2602)
Q Consensus 228 -----------------~~~~~~gt~~~~~~~al~~al~~~~~-~~~~~~~~~~~l~~~l~~~L~~~~---------~g~ 280 (2602)
..+++.|+++..+++++.+++++... ++++++++..++++++.+.|.+.. +++
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~ 388 (465)
T 3e9k_A 309 ELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLEIFKQATMKALRKKSVLLTGYLEYLIKHNYGKDKAATKKPVV 388 (465)
T ss_dssp CHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCC---------CE
T ss_pred CCCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCe
Confidence 24566789999999999999996554 489999999999999999998732 789
Q ss_pred EEeCCCCC-CCCceEEEEEcccChhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEec-CCCCCH
Q psy15216 281 YINGDMNN-RIPHNLNISFNFIEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTI-GRFTTE 356 (2602)
Q Consensus 281 ~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~-~~~~t~ 356 (2602)
+++.+.+. .....+.+.++ .+..++...| +||.++.+ . +++||+|+ +.+++.
T Consensus 389 ~~~~p~~~~~~g~~~~~~~~-~~~~~l~~~L~~~Gi~v~~~----~-------------------~~~iRis~~~~~~t~ 444 (465)
T 3e9k_A 389 NIITPSHVEERGCQLTITFS-VPNKDVFQELEKRGVVCDKR----N-------------------PNGIRVAPVPLYNSF 444 (465)
T ss_dssp EECSCSSGGGBCSCEEEEEC-CTTCCHHHHHHTTTEECEEE----T-------------------TTEEEEBCCTTTCCH
T ss_pred EEeCCCCHhhcccEEEEEec-CCHHHHHHHHHHCCEEEecC----C-------------------CCEEEEeCcccCCCH
Confidence 98876432 12344555565 4556677766 78887621 1 27899998 899999
Q ss_pred HHHHHHHHHHHhh
Q psy15216 357 KEIDFTIKLLKMK 369 (2602)
Q Consensus 357 edid~li~~L~~~ 369 (2602)
+|+++++++|++.
T Consensus 445 edi~~~~~~l~~~ 457 (465)
T 3e9k_A 445 HDVYKFTNLLTSI 457 (465)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999974
|
| >1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.8e-27 Score=305.97 Aligned_cols=342 Identities=19% Similarity=0.262 Sum_probs=273.9
Q ss_pred eeeeccCC-CCCCCHHHHHHHHHHHhhcc-CCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHH
Q psy15216 1394 TNIVFKDA-TTPIDPRVVDKMIPYLRVQF-GNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAI 1471 (2602)
Q Consensus 1394 ~~v~L~~~-~~~~~~~v~eal~~~l~~~~-~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al 1471 (2602)
..++++.+ ..+.++.+.+++.+.+.... .++.. +...........++|+.+++++|+++++|++|+|+|+|++.++
T Consensus 16 ~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~--~~~y~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~ 93 (390)
T 1elu_A 16 NKTYFNFGGQGILPTVALEAITAMYGYLQENGPFS--IAANQHIQQLIAQLRQALAETFNVDPNTITITDNVTTGCDIVL 93 (390)
T ss_dssp TSEECCTTTCCCCCHHHHHHHHHHHHHHHHHCSSS--HHHHHHHHHHHHHHHHHHHHHTTSCGGGEEEESSHHHHHHHHH
T ss_pred CeEEecCCccCCCCHHHHHHHHHHHHHHhccCCcc--hhhHHHHHHHHHHHHHHHHHHcCCCHHHEEEeCChHHHHHHHH
Confidence 35677643 45677889999999887632 22321 1111222467889999999999998889999999999999999
Q ss_pred HhhhhhhccCCCEEEEcCCCCcchHHHHHH-HHhCCcEEEEeccC--CCCCcChhHHHhhccCCceEEEEeccccccccc
Q psy15216 1472 KGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDGFRVTYLKPK--NNGLITLSQLEEKICSDTILVSVMLVNNEIGVI 1548 (2602)
Q Consensus 1472 ~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~-~~~~G~~v~~v~~~--~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~ 1548 (2602)
.++. +++||+|+++.++|+++...+.. ++..|++++.++.+ .++.+|+++|++++++++++|++++++||||.+
T Consensus 94 ~~~~---~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~ 170 (390)
T 1elu_A 94 WGLD---WHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLGPKTRLVILSHLLWNTGQV 170 (390)
T ss_dssp HHSC---CCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCCTTEEEEEEESBCTTTCCB
T ss_pred hCCC---CCCCCEEEEecCcccHHHHHHHHHHHHhCcEEEEEcCCCCCCccchHHHHHHhcCCCceEEEEeccccCCcee
Confidence 9983 27999999999999998776543 24449999999986 567899999999999999999999999999999
Q ss_pred cChHHHHHHhh----hcCCEEEEecccccCcccccCCCCCccEEEEcccc-ccCCCceEEEEEecCCCCccccccccCCc
Q psy15216 1549 QPILEIGELCR----SKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGH 1623 (2602)
Q Consensus 1549 ~~l~~I~~ia~----~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K-~~gp~G~G~l~~~~~~~~~l~~~~~g~~~ 1623 (2602)
+|+++|.++|+ +||+++|+|++|+.|..++++...++|++++|+|| ++|+.|+|++++++++++.+.+...|+..
T Consensus 171 ~~~~~i~~l~~~~~~~~~~~li~Dea~~~g~~~~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~~~~g~~~ 250 (390)
T 1elu_A 171 LPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPLDFSRLEVDYYAFTGHKWFAGPAGVGGLYIHGDCLGEINPTYVGWRS 250 (390)
T ss_dssp CCHHHHHHHHHHCCSSSCCEEEEECTTTBTTBCCCTTTSCCSEEEEESSSTTCCCTTCEEEEECTTTGGGCCCCSCCTTT
T ss_pred cCHHHHHHHHhhhhhhcCcEEEEEcccccCCcCCChhhcCCCEEEccccccccCCCceEEEEECHHhHhhcCCccccCCc
Confidence 99999999999 99999999999999988877777789999999999 88898999999999888887765554432
Q ss_pred ---------------cccCCCCCcchhHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCC
Q psy15216 1624 ---------------EYGLRSGTLATHQIVGMGEAFRLARI-E-MKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRI 1686 (2602)
Q Consensus 1624 ---------------~~~~~~gt~~~~~~~al~~aL~~~~~-~-~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~ 1686 (2602)
...+..++++...+.++.++++.+.. + +++..+++.++++++.+.|.+ ++++.+..+.. ..
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~-~~ 328 (390)
T 1elu_A 251 ITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQ-LPHVHCLATSA-PQ 328 (390)
T ss_dssp EEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH-STTEEESCSSC-CS
T ss_pred ccccccCcccccccchHhhCCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHh-cCCcEEecCcc-cc
Confidence 12456688888888888888886543 3 888999999999999999988 67998875421 12
Q ss_pred CceEEEEEe-cCCcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHH
Q psy15216 1687 PHNLNISFN-FIEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK 1763 (2602)
Q Consensus 1687 ~~~~~~~~~-~~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~ 1763 (2602)
..+..+.++ +.+..++...| +||.++++. . .+++||+++.+++.+|+++++++|+
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~---~-------------------~~~iRis~~~~~~~~~i~~~~~~l~ 386 (390)
T 1elu_A 329 AGLVSFTVDSPLGHRAIVQKLEEQRIYLRTIA---D-------------------PDCIRACCHYITDEEEINHLLARLA 386 (390)
T ss_dssp SSEEEEEECSSSCHHHHHHHHHHTTEECEEET---T-------------------TTEEEEECCTTCCHHHHHHHHHHHT
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHCCEEEEecC---C-------------------CCeEEEecccCCCHHHHHHHHHHHH
Confidence 344455554 33556676666 799988764 1 2789999999999999999999998
Q ss_pred H
Q psy15216 1764 M 1764 (2602)
Q Consensus 1764 ~ 1764 (2602)
+
T Consensus 387 ~ 387 (390)
T 1elu_A 387 D 387 (390)
T ss_dssp T
T ss_pred h
Confidence 5
|
| >3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-28 Score=309.65 Aligned_cols=330 Identities=13% Similarity=0.054 Sum_probs=258.0
Q ss_pred eeccCCCCCCCHHHHHHHHHHHhhccCCCCCcc--chhHHHHHHHHHHHHHHHHHHhCCC-CCcEEE-eCCHHHHHHHHH
Q psy15216 1396 IVFKDATTPIDPRVVDKMIPYLRVQFGNPASRN--HIYGWTAEKAIEKARNEVAQLIYAD-PREIIW-TSGATESNNLAI 1471 (2602)
Q Consensus 1396 v~L~~~~~~~~~~v~eal~~~l~~~~~np~~~~--~~~~~~~~~~~~~lr~~ia~~~g~~-~~~iv~-t~gaT~al~~al 1471 (2602)
..+..++++.|+++++++.+.+.+.++||.+.. ++.+..+...++++|+.+++++|++ +.+|+| |+|+|+++++++
T Consensus 7 ~~f~pgpt~~~~~V~~a~~~~~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~~~~~~~v~f~t~~~T~a~n~~~ 86 (361)
T 3m5u_A 7 INFSAGPSTLPLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYELNDDYEVLFLQGGASLQFAMIP 86 (361)
T ss_dssp EECCSSSCCCCHHHHHHHHHTSSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHH
T ss_pred EeecCCCCCCcHHHHHHHHHHHHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCcHHHHHHHHH
Confidence 345677889999999999999887777765421 2336678899999999999999996 457888 999999999999
Q ss_pred HhhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCC--cChhHHHhhccCCceEEEEecccccccccc
Q psy15216 1472 KGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGL--ITLSQLEEKICSDTILVSVMLVNNEIGVIQ 1549 (2602)
Q Consensus 1472 ~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~--id~d~l~~~i~~~t~lv~l~~~~n~tG~~~ 1549 (2602)
.++. +||++++...++.+. .+...+++.|+++.++++++++. ++++. + |+++|++|.++|.+|.||+++
T Consensus 87 ~~~~-----~~~~~~~i~~~~~~~-~~~~~a~~~G~~v~~~~~~~~g~~~~~~~~--~-l~~~t~lv~~~~~e~~tG~~~ 157 (361)
T 3m5u_A 87 MNLA-----LNGVCEYANTGVWTK-KAIKEAQILGVNVKTVASSEESNFDHIPRV--E-FSDNADYAYICSNNTIYGTQY 157 (361)
T ss_dssp HHHC-----CSSCEEEEECSHHHH-HHHHHHHHTTCCEEEEEECTTTTSCSCCCC--C-CCTTSSEEEEESEETTTTEEC
T ss_pred HhcC-----CCCeEEEEeCCHHHH-HHHHHHHHcCCceEEEecccCcCCCcCChh--h-cCCCCCEEEEeCCCCCcceeC
Confidence 9885 577553222233343 33455567799999999998774 57776 4 999999999999999999998
Q ss_pred ChHHHHHHhhhcCCEEEEecccccCcccccCCCCCccEEEEccccccCCCceEEEEEecCCCCcccc----ccccCC--c
Q psy15216 1550 PILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEA----QIHGGG--H 1623 (2602)
Q Consensus 1550 ~l~~I~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K~~gp~G~G~l~~~~~~~~~l~~----~~~g~~--~ 1623 (2602)
|. +++ +|+++++|++|++|..++|+.+ +|++++|+||++||+|+|++++++++.+.+.| .+..+. .
T Consensus 158 ~~-----i~~-~~~~~~vD~~q~~g~~~id~~~--~d~~~~s~~K~~gp~G~g~l~~~~~~~~~~~~~~~p~~~~~~~~~ 229 (361)
T 3m5u_A 158 QN-----YPK-TKTPLIVDASSDFFSRKVDFSN--IALFYGGVQKNAGISGLSCIFIRKDMLERSKNKQIPSMLNYLTHA 229 (361)
T ss_dssp SS-----CCC-CSSCEEEECGGGTTSSCCCCTT--EEEEEEETTTTSSCTTCEEEEEEHHHHHHHHTCCCCGGGCHHHHH
T ss_pred Cc-----ccc-cCCEEEEEcccccCCCCCCccc--CCEEEEechhccCCCccEEEEEcHHHHhhhcCCCCCceeehHHHh
Confidence 82 444 4999999999999999999985 69999999998899999999999887655543 222211 1
Q ss_pred cccCCCCCcchhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhcCCcE-EEeCCCCCCCCceEEEEEec-CCc
Q psy15216 1624 EYGLRSGTLATHQIVGMGEAFRLARI--EMKEELKRILFLQKRLYNGLMESIEEI-YINGDMNNRIPHNLNISFNF-IEG 1699 (2602)
Q Consensus 1624 ~~~~~~gt~~~~~~~al~~aL~~~~~--~~~~~~~~~~~l~~~l~~~L~~~~~gl-~i~~~~~~~~~~~~~~~~~~-~~~ 1699 (2602)
+.....+|++++.++++.+|++++.. +++++.++..+++++++++|.+ ++++ .++.++..+.+..+.|.+++ ...
T Consensus 230 ~~~~~~~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l~~~L~~-~~g~~~~~~~~~~rs~~ivsf~~~~~~~~ 308 (361)
T 3m5u_A 230 ENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYECIDL-SNGFYKGHADKKDRSLMNVSFNIAKNKDL 308 (361)
T ss_dssp HTTTCSSCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHT-STTSEEESSCGGGBCSSEEEEEESSCTTH
T ss_pred hcCCCCCCccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHH-CCCeeeccCCHHHcCCeEEEEECCCchhh
Confidence 24556789999999999999997664 5999999999999999999987 6655 55544444566677788775 221
Q ss_pred -HHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1700 -ESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1700 -~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
..+...| +||.++.|..+. +.+|+|++.+||.+||++++++|++
T Consensus 309 ~~~~~~~L~~~gI~~~~g~~~~---------------------g~iRiS~~~~~t~edId~l~~al~~ 355 (361)
T 3m5u_A 309 EPLFVKEAEEAGMIGLKGHRIL---------------------GGIRASIYNALNLDQVKTLCEFMKE 355 (361)
T ss_dssp HHHHHHHHHHTTEECCBCCTTT---------------------CSEEEECCTTSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHCCCEEecCCCcc---------------------CeEEEEccCCCCHHHHHHHHHHHHH
Confidence 3555555 799988765421 4599999999999999999999997
|
| >2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.4e-28 Score=316.06 Aligned_cols=332 Identities=16% Similarity=0.204 Sum_probs=265.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCC-cEEEeCCHHHHHHHHHHhccc
Q psy15216 2 DYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPR-EIIWTSGATESNNLAIKGAAH 80 (2602)
Q Consensus 2 d~a~~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~-~Iv~t~g~T~al~~~~~~l~~ 80 (2602)
++.+..++|+.+++++.+.+.. + +........+++++++++++|++++ +|++|+|+|+|+++++.++.
T Consensus 23 ~~~g~~~~~~~v~~a~~~~~~~-----~-----~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~- 91 (393)
T 2huf_A 23 MGPGPSNAPQRVLDAMSRPILG-----H-----LHPETLKIMDDIKEGVRYLFQTNNIATFCLSASGHGGMEATLCNLL- 91 (393)
T ss_dssp CSSSCCCCCHHHHHHTTSCCCC-----T-----TSHHHHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHHC-
T ss_pred ecCCCCCCCHHHHHHHHhhhcc-----C-----CCHHHHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHHh-
Confidence 4566668889988888765432 1 1223456789999999999999875 89999999999999999986
Q ss_pred ccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccC-CceEEEEecccCcccccccHHHHH
Q psy15216 81 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS-DTILVSVMLVNNEIGVIQPILEIG 159 (2602)
Q Consensus 81 ~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~-~tklv~i~~~~npTG~~~~l~~I~ 159 (2602)
++||+|++++++|+++ .+...++..|++++.+++++++.+|+++|++++++ ++++|++++++||||.++|+++|.
T Consensus 92 ---~~gd~vl~~~~~~~~~-~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~ 167 (393)
T 2huf_A 92 ---EDGDVILIGHTGHWGD-RSADMATRYGADVRVVKSKVGQSLSLDEIRDALLIHKPSVLFLTQGDSSTGVLQGLEGVG 167 (393)
T ss_dssp ---CTTCEEEEEESSHHHH-HHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHH
T ss_pred ---CCCCEEEEECCCcchH-HHHHHHHHcCCeeEEEeCCCCCCCCHHHHHHHHhccCCcEEEEEccCCCccccCCHHHHH
Confidence 7999999999999985 34444566799999999988888999999999987 899999999999999999999999
Q ss_pred HHHHhcCCEEEEecccccccccccCCCCCccEEEecccc-ccCCCCcEEEEEecCCCCcccce-------e---------
Q psy15216 160 ELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQ-------I--------- 222 (2602)
Q Consensus 160 ~la~~~g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K-~~Gp~G~G~l~~~~~~~~~l~~~-------~--------- 222 (2602)
++|++||+++|+|++|+++..++++..+++|++++|+|| ++||+|+|++++++++++.+.+. +
T Consensus 168 ~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~sK~l~g~~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (393)
T 2huf_A 168 ALCHQHNCLLIVDTVASLGGAPMFMDRWEIDAMYTGSQKVLGAPPGITPVSFSHRAVERYKRRNTKVKVYYWDMSLVGDY 247 (393)
T ss_dssp HHHHHTTCEEEEECTTTBTTBCCCTTTTTCSEEECCSSSTTCCCSSCEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHH
T ss_pred HHHHHcCCEEEEEcccccCCCCcchhhcCccEEEECCCcccccCCCeEEEEECHHHHHHHhhcCCCCceEEEchHHHHhh
Confidence 999999999999999999888877777789999999999 57899999999998766554432 1
Q ss_pred cCCCccccccccCcchhHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEc-c
Q psy15216 223 HGGGHEYGLRSGTLATHQIVGMGEAFRLAR-IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN-F 300 (2602)
Q Consensus 223 ~g~~~~~~~~~gt~~~~~~~al~~al~~~~-~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~-~ 300 (2602)
.++....++..++++..+++++.++++... .++++..+++.++++++.+.|.+ + ++.++.++..+.+.++.+.++ .
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~~~~~~ 325 (393)
T 2huf_A 248 WGCFGRPRIYHHTISSTLLYGLREAIAMACEEGLPALIARHEDCAKRLYRGLQD-A-GFELYADPKDRLSTVTTIKVPQG 325 (393)
T ss_dssp TTCSSSCCCCSCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-T-TCCBSSCGGGBCTTEEEEECCTT
T ss_pred hccccccCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH-c-CCeeccCccccCCcEEEEEcCCC
Confidence 111122345668899999999988998654 35888999999999999999988 4 777665432223445556665 4
Q ss_pred cChhHHHHHh--C-CeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCC-CCHHHHHHHHHHHHhh
Q psy15216 301 IEGESLLMAI--K-DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRF-TTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 301 ~~~~~~~~~L--~-gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~-~t~edid~li~~L~~~ 369 (2602)
.+..++...| + ||.+++|..|.. .+++||+++.+ ++++++++++++|++.
T Consensus 326 ~~~~~~~~~L~~~~gi~v~~g~~~~~-------------------~~~~Ri~~~~~~~~~e~i~~~~~~l~~~ 379 (393)
T 2huf_A 326 VDWLKAAQYAMKTYLVEISGGLGPTA-------------------GQVFRIGLMGQNATTERVDRVLQVFQEA 379 (393)
T ss_dssp CCHHHHHHHHHHHHCEECBCCCGGGT-------------------TTEEEEECCGGGCSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCEEEecCccccc-------------------CCEEEEEcccCcCCHHHHHHHHHHHHHH
Confidence 5667777766 3 999988775532 27899999554 5799999999999864
|
| >3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.6e-27 Score=305.81 Aligned_cols=331 Identities=15% Similarity=0.127 Sum_probs=261.6
Q ss_pred CCCCCCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCC-CCcEEEeCCHHHHHHHHHHhcccc
Q psy15216 3 YSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYAD-PREIIWTSGATESNNLAIKGAAHF 81 (2602)
Q Consensus 3 ~a~~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~-~~~Iv~t~g~T~al~~~~~~l~~~ 81 (2602)
+.+..+.|+.+++++.+.+..... +.+..+....+..+++++++++++|++ ++++++++|+|+|+++++.++.
T Consensus 9 ~p~p~~~~~~v~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~al~~~~~~l~-- 82 (362)
T 3ffr_A 9 TPGPSELYPTVRQHMITALDEKIG----VISHRSKKFEEVYKTASDNLKTLLELPSNYEVLFLASATEIWERIIQNCV-- 82 (362)
T ss_dssp CSSSCCCCTTHHHHHHHHHHTTTT----TSCTTSHHHHHHHHHHHHHHHHHTTCCTTEEEEEESCHHHHHHHHHHHHC--
T ss_pred cCCCcCCCHHHHHHHHHHhcCCcc----CcCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCchHHHHHHHHhcc--
Confidence 455667889999999888764220 011123445578899999999999984 5789999999999999999988
Q ss_pred cccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHH
Q psy15216 82 YKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGEL 161 (2602)
Q Consensus 82 ~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~l 161 (2602)
++ +.+++.. .|.+ ..+...++..|++++.++.++++.+|+++|+ ++++|++|++++++||||.++|+++|.++
T Consensus 83 --~~-~~i~~~~-~~~~-~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~--~~~~~~~v~~~~~~nptG~~~~l~~i~~l 155 (362)
T 3ffr_A 83 --EK-KSFHCVN-GSFS-KRFYEFAGELGREAYKEEAAFGKGFYPADIT--VPADAEIICLTHNETSSGVSMPVEDINTF 155 (362)
T ss_dssp --SS-EEEEEEC-SHHH-HHHHHHHHHTTCEEEEEECCTTCCCCGGGCC--CCTTCCEEEEESEETTTTEECCHHHHTTS
T ss_pred --CC-cEEEEcC-cHHH-HHHHHHHHHhCCCeEEEecCCCCCCCHHHHh--ccCCccEEEEEcCCCCcceeCCHHHHHHH
Confidence 56 4454544 4444 2233455667999999999888889999998 88899999999999999999999999999
Q ss_pred HHhc-CCEEEEecccccccccccCCCCCccEEEeccccccC-CCCcEEEEEecCCCCcccceecCCCcc-----------
Q psy15216 162 CRSK-GVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYG-PKGIGALYIRRNPRTRIEAQIHGGGHE----------- 228 (2602)
Q Consensus 162 a~~~-g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K~~G-p~G~G~l~~~~~~~~~l~~~~~g~~~~----------- 228 (2602)
|++| |+++|+|++|+.+..++++.. +|++++|+||+++ |+|+|++++++++++.+.+...|++..
T Consensus 156 a~~~p~~~li~D~a~~~~~~~~~~~~--~d~~~~s~~K~~~~~~G~g~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~ 233 (362)
T 3ffr_A 156 RDKNKDALIFVDAVSSLPYPKFDWTK--IDSVFFSVQKCFGLPAGLGVWILNDRVIEKSKALLAKRKSIGTYHTIPSMLE 233 (362)
T ss_dssp GGGSTTSEEEEECTTTTTSSCCCTTS--CSEEEEETTSTTCCCSCCEEEEEEHHHHHHHHHHHHTTCCCCSTTSHHHHHH
T ss_pred HHhCCCCEEEEecccccCCcccChhH--CcEEEEecccccCCCCceEEEEECHHHHHHhhhccccCCCCcccccHHHHHH
Confidence 9999 999999999999988777655 7999999999776 999999999998877776655433211
Q ss_pred ---ccccccCcchhHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCC-CCCCCceEEEEEcccCh
Q psy15216 229 ---YGLRSGTLATHQIVGMGEAFRLAR-IEMKEELKRILFLQKRLYNGLMESIEEIYINGDM-NNRIPHNLNISFNFIEG 303 (2602)
Q Consensus 229 ---~~~~~gt~~~~~~~al~~al~~~~-~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~-~~~~~~~~~~~~~~~~~ 303 (2602)
.....++++...++++.+++++.. .+++++.+++.++++++++.|.+ +||++++.+. ....+..+.+.++. +.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~~~~~~~~~~~~~~~-~~ 311 (362)
T 3ffr_A 234 KARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAALINTYIES-SKVFSFGVEDAKLRSMTTIVANTTM-LP 311 (362)
T ss_dssp HHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-CSSEEESSSCGGGBCSSEEEEEESS-CH
T ss_pred HhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHH-ccCceeccCChhhcCCceEEEecCC-CH
Confidence 112267899999999988988543 45789999999999999999987 7899987632 22334555666666 67
Q ss_pred hHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 304 ESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 304 ~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
.++.+.| +||.+++|..+.. .+++|||++.+++++|+++++++|++.
T Consensus 312 ~~~~~~l~~~gi~~~~g~~~~~-------------------~~~iRis~~~~~~~e~i~~l~~~l~~~ 360 (362)
T 3ffr_A 312 GEINKILEPFDMAVGAGYGSKK-------------------ETQIRIANFPAHSLEQVHKLVQTLKEK 360 (362)
T ss_dssp HHHHHHHGGGTEEEEECSGGGT-------------------TTEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCeEEecCccccC-------------------CCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 7787777 7999998865433 278999999999999999999999863
|
| >1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-27 Score=307.07 Aligned_cols=324 Identities=11% Similarity=0.090 Sum_probs=261.3
Q ss_pred cCCCCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhh
Q psy15216 1399 KDATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFY 1478 (2602)
Q Consensus 1399 ~~~~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~ 1478 (2602)
..+..+.++.+++++.+.+.. + .++.......++|+++++++|++++++++|+|+|+|++.++.++.
T Consensus 6 ~~~p~~~~~~v~~a~~~~~~~-----~-----~~~~~~~~~~~l~~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~--- 72 (352)
T 1iug_A 6 TPGPVRLHPKALEALARPQLH-----H-----RTEAAREVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNLF--- 72 (352)
T ss_dssp SSSSCCCCHHHHHHHHSCCCC-----T-----TSHHHHHHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHHC---
T ss_pred cCCCCCCCHHHHHHhccCCCC-----c-----cCHHHHHHHHHHHHHHHHHhCCCCceEEEcCchHHHHHHHHHhcc---
Confidence 455668888999988776531 1 133455678899999999999988889999999999999999986
Q ss_pred ccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccCCceEEEEeccccccccccChHHHHHHh
Q psy15216 1479 KKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELC 1558 (2602)
Q Consensus 1479 ~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~~ia 1558 (2602)
++||+|++++++|+++. ....+...|++++.++.++++.+|++++++ +++++|++++++||||.+.|+++|.++|
T Consensus 73 -~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~---~~~~~v~~~~~~nptG~~~~l~~i~~l~ 147 (352)
T 1iug_A 73 -APGERVLVPVYGKFSER-FYEIALEAGLVVERLDYPYGDTPRPEDVAK---EGYAGLLLVHSETSTGALADLPALARAF 147 (352)
T ss_dssp -CTTCEEEEEECSHHHHH-HHHHHHHTTCEEEEEECCTTCCCCTTTSCC---SSCSEEEEESEETTTTEECCHHHHHHHH
T ss_pred -CCCCeEEEEeCCchhHH-HHHHHHHcCCceEEEeCCCCCCCCHHHHhc---cCCcEEEEEEecCCcceecCHHHHHHHH
Confidence 79999999999999986 445556679999999998888899999987 7899999999999999999999999999
Q ss_pred hhc--CCEEEEecccccCcccccCCCCCccEEEEcccc-ccCCCceEEEEEecCCCCcccc---------ccccCCcccc
Q psy15216 1559 RSK--GVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEA---------QIHGGGHEYG 1626 (2602)
Q Consensus 1559 ~~~--gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K-~~gp~G~G~l~~~~~~~~~l~~---------~~~g~~~~~~ 1626 (2602)
++| |+++|+|++|+.|..++++..+++|++++|+|| ++||.|+|+++++++.++.+.+ ... .....
T Consensus 148 ~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 225 (352)
T 1iug_A 148 KEKNPEGLVGADMVTSLLVGEVALEAMGVDAAASGSQKGLMCPPGLGFVALSPRALERLKPRGYYLDLARELK--AQKEG 225 (352)
T ss_dssp HHHCTTCEEEEECTTTBTTBCCCSGGGTCSEEEEESSSTTCCCSCEEEEEECHHHHHTCCCCSSTTCHHHHHH--HHTTT
T ss_pred HhhCCCCEEEEECCccccCcceeccccCeeEEEecCcccccCCCceeEEEECHHHHHHhhCCCceeeHHHHHh--hcccC
Confidence 999 999999999999887777766778999999999 8889999999998875544332 100 01123
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEe-cCCcHHHHHh
Q psy15216 1627 LRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN-FIEGESLLMA 1705 (2602)
Q Consensus 1627 ~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 1705 (2602)
...++++...+.++.++++.....+++..+++.++++++.+.|.+ . ++.+..+. ..+....+.++ +.+..++...
T Consensus 226 ~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 301 (352)
T 1iug_A 226 ESAWTPAINLVLAVAAVLEEVLPRLEEHLALKAWQNALLYGVGEE-G-GLRPVPKR--FSPAVAAFYLPEGVPYARVKEA 301 (352)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHH-T-TCEESCSS--BCTTCEEEECCTTCCHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-C-CCcccccc--cCCeEEEEEcCCCCCHHHHHHH
Confidence 456788888888888898865555788899999999999999988 5 78776542 23445556665 3456677776
Q ss_pred c--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1706 I--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1706 L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
| +||.+++|..+.. .+++|++++.++|.+|+++++++|++.
T Consensus 302 l~~~gi~v~~~~~~~~-------------------~~~iRi~~~~~~~~~~i~~~~~~l~~~ 344 (352)
T 1iug_A 302 FAQRGAVIAGGQGPLK-------------------GKVFRLSLMGAYDRYEALGVAGMFREV 344 (352)
T ss_dssp HHTTTEECEECCGGGT-------------------TTEEEECCCSSCCHHHHHHHHHHHHHH
T ss_pred HHHCCEEEEeCCCccC-------------------CCEEEEEccccCCHHHHHHHHHHHHHH
Confidence 6 7999988763221 278999999999999999999999873
|
| >2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-27 Score=309.51 Aligned_cols=333 Identities=15% Similarity=0.201 Sum_probs=264.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCC-CCcEEEeCCHHHHHHHHHHhcc
Q psy15216 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYAD-PREIIWTSGATESNNLAIKGAA 79 (2602)
Q Consensus 1 Ld~a~~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~-~~~Iv~t~g~T~al~~~~~~l~ 79 (2602)
||+++.++.++.+.+++.+.+.. + ++....+..+++++++++++|++ ++++++++|+|+|+.+++.++.
T Consensus 23 l~~~~~~~~~~~v~~a~~~~~~~-----~-----~~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~a~~~~~~~l~ 92 (386)
T 2dr1_A 23 LFTAGPVACFPEVLEIMKVQMFS-----H-----RSKEYRKVHMDTVERLREFLEVEKGEVLLVPSSGTGIMEASIRNGV 92 (386)
T ss_dssp ECCSSSCCCCHHHHHHTTSCCCC-----T-----TSHHHHHHHHHHHHHHHHHHTCSSSEEEEESSCHHHHHHHHHHHHS
T ss_pred eecCCCcCCcHHHHHHHhccccc-----c-----cCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCChHHHHHHHHHHhh
Confidence 57888889999988887765431 1 12234678899999999999997 6779999999999999999986
Q ss_pred cccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhc--cCCceEEEEecccCcccccccHHH
Q psy15216 80 HFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKI--CSDTILVSVMLVNNEIGVIQPILE 157 (2602)
Q Consensus 80 ~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i--~~~tklv~i~~~~npTG~~~~l~~ 157 (2602)
++||+|++++++|++. .+...++..|++++.++.++++.+|+++|++++ .+++++|++++++||||.+.|+++
T Consensus 93 ----~~gd~vl~~~~~~~~~-~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~ 167 (386)
T 2dr1_A 93 ----SKGGKVLVTIIGAFGK-RYKEVVESNGRKAVVLEYEPGKAVKPEDLDDALRKNPDVEAVTITYNETSTGVLNPLPE 167 (386)
T ss_dssp ----CTTCEEEEEESSHHHH-HHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECCHHH
T ss_pred ----cCCCeEEEEcCCchhH-HHHHHHHHhCCceEEEecCCCCCCCHHHHHHHHhcCCCCcEEEEEeecCCcchhCCHHH
Confidence 7999999999999983 122333456999999999888889999999999 578999999999999999999999
Q ss_pred HHHHHHhcCCEEEEecccccccccccCCCCCccEEEeccccccC-CCCcEEEEEecCCCCccccee-cCCC---------
Q psy15216 158 IGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYG-PKGIGALYIRRNPRTRIEAQI-HGGG--------- 226 (2602)
Q Consensus 158 I~~la~~~g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K~~G-p~G~G~l~~~~~~~~~l~~~~-~g~~--------- 226 (2602)
|.++|++||+++|+|++|+.+..++++..+++|++++|+||+++ |.|+|++++++++++.+.+.. .++.
T Consensus 168 i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~sK~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (386)
T 2dr1_A 168 LAKVAKEHDKLVFVDAVSAMGGADIKFDKWGLDVVFSSSQKAFGVPPGLAIGAFSERFLEIAEKMPERGWYFDIPLYVKY 247 (386)
T ss_dssp HHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCSEEEEETTSTTCCCSSCEEEEECHHHHHHHTTCTTCCSTTCHHHHHHH
T ss_pred HHHHHHHcCCeEEEEccccccCccccccccCCcEEEEeccccccCCCceEEEEECHHHHHHHhcCCCCceEEeHHHHHHh
Confidence 99999999999999999999887777777789999999999665 558999999987766554311 1110
Q ss_pred cc-ccccccCcchhHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEc-ccC
Q psy15216 227 HE-YGLRSGTLATHQIVGMGEAFRLARI--EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN-FIE 302 (2602)
Q Consensus 227 ~~-~~~~~gt~~~~~~~al~~al~~~~~--~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~-~~~ 302 (2602)
.. .....++++...++++.++++.... ++++..++++++++++.+.|.+ . ++.+..+...+.+.++.+.++ ..+
T Consensus 248 ~~~~~~~~~~~~~~~~~a~~~~l~~~~~~g~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~~~~~~~~ 325 (386)
T 2dr1_A 248 LKEKESTPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYEKRAKMVREGVRE-I-GLDILAEPGHESPTITAVLTPPGIK 325 (386)
T ss_dssp HHHHSSCSSCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH-T-TCCBSSCTTCBCSSEEEEECCTTCC
T ss_pred hccCCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH-c-CCeeCcCccccCCceEEEEcCCCCC
Confidence 00 1244678888888888889986554 4789999999999999999988 4 777665432223445555555 345
Q ss_pred hhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 303 GESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 303 ~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
..++...| +||.++++..+.. .+++||+++.+++++|+++++++|++.
T Consensus 326 ~~~~~~~l~~~gi~v~~~~~~~~-------------------~~~iRi~~~~~~~~~~i~~~~~~l~~~ 375 (386)
T 2dr1_A 326 GDEVYEAMRKRGFELAKGYGSVK-------------------EKTFRIGHMGYMKFEDIQEMLDNLREV 375 (386)
T ss_dssp HHHHHHHHHHTTEECEECCGGGT-------------------TTEEEEECCSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCeEEecCccccC-------------------CCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 66777777 7999988764321 378999999999999999999999964
|
| >2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-27 Score=312.00 Aligned_cols=335 Identities=14% Similarity=0.102 Sum_probs=264.1
Q ss_pred eeeccC-CCCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHh
Q psy15216 1395 NIVFKD-ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKG 1473 (2602)
Q Consensus 1395 ~v~L~~-~~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~ 1473 (2602)
.+|++. +..+.++.+++++.+.+.. +. ++.......++|+++++++|++++++++|+|+|+|+++++.+
T Consensus 9 ~~yl~~~~~~~~~~~v~~a~~~~~~~-----~~-----~~~~~~~~~~l~~~la~~~g~~~~~v~~t~g~t~a~~~~~~~ 78 (392)
T 2z9v_A 9 PVITLTAGPVNAYPEVLRGLGRTVLY-----DY-----DPAFQLLYEKVVDKAQKAMRLSNKPVILHGEPVLGLEAAAAS 78 (392)
T ss_dssp CSEECSSSCCCCCHHHHHHTTSCCCC-----TT-----SHHHHHHHHHHHHHHHHHTTCSSCCEEESSCTHHHHHHHHHH
T ss_pred cceeecCCCcCCCHHHHHHHhccccc-----cc-----cHHHHHHHHHHHHHHHHHhCCCCCEEEEeCCchHHHHHHHHH
Confidence 467764 4467788888888765532 11 234556788999999999999888999999999999999999
Q ss_pred hhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhc--cCCceEEEEeccccccccccCh
Q psy15216 1474 AAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKI--CSDTILVSVMLVNNEIGVIQPI 1551 (2602)
Q Consensus 1474 l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i--~~~t~lv~l~~~~n~tG~~~~l 1551 (2602)
+. ++||+|++++++|+++. ....+...|++++.++.++++.+|+++|++++ ++++++|++++++||||.++|+
T Consensus 79 ~~----~~gd~Vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l 153 (392)
T 2z9v_A 79 LI----SPDDVVLNLASGVYGKG-FGYWAKRYSPHLLEIEVPYNEAIDPQAVADMLKAHPEITVVSVCHHDTPSGTINPI 153 (392)
T ss_dssp HC----CTTCCEEEEESSHHHHH-HHHHHHHHCSCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEESEEGGGTEECCH
T ss_pred hc----CCCCEEEEecCCcccHH-HHHHHHHcCCceEEeeCCCCCCCCHHHHHHHHhcCCCCcEEEEeccCCCCceeccH
Confidence 86 79999999999999874 33444445999999999888889999999999 5689999999999999999999
Q ss_pred HHHHHHhhhcCCEEEEecccccCcccccCCCCCccEEEEcccc-ccCCCceEEEEEecCCCCcccccc-------cc---
Q psy15216 1552 LEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQI-------HG--- 1620 (2602)
Q Consensus 1552 ~~I~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K-~~gp~G~G~l~~~~~~~~~l~~~~-------~g--- 1620 (2602)
++|.++|++||+++|+|++|+.|..++++..+++|++++|+|| ++||.|+|++++++++++.+.+.. .+
T Consensus 154 ~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~sK~~~~~~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~ 233 (392)
T 2z9v_A 154 DAIGALVSAHGAYLIVDAVSSFGGMKTHPEDCKADIYVTGPNKCLGAPPGLTMMGVSERAWAKMKANPLAPRASMLSIVD 233 (392)
T ss_dssp HHHHHHHHHTTCEEEEECTTTBTTBSCCGGGGTCSEEEECSSSTTCCCSCCEEEEECHHHHHHHHTCTTSCCSSTTCSGG
T ss_pred HHHHHHHHHcCCeEEEEcccccCCcccccccccceEEEecCcccccCCCceeEEEECHHHHHHhhhccCCCCceeccHHH
Confidence 9999999999999999999999887777777789999999999 788999999999987665554321 11
Q ss_pred ---CCccccCCCCCcchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCC-CCCCceEEEEEe
Q psy15216 1621 ---GGHEYGLRSGTLATHQIVGMGEAFRLARIE-MKEELKRILFLQKRLYNGLMESIEEIYINGDMN-NRIPHNLNISFN 1695 (2602)
Q Consensus 1621 ---~~~~~~~~~gt~~~~~~~al~~aL~~~~~~-~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~-~~~~~~~~~~~~ 1695 (2602)
+........++++...+.++.++++..... +++..+++.++++++.+.|.+ + ++.+..++. ...+.+..+.++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~~~~~ 311 (392)
T 2z9v_A 234 WENAWSRDKPFPFTPSVSEINGLDVALDLYLNEGPEAVWARHALTAKAMRAGVTA-M-GLSVWAASDSIASPTTTAVRTP 311 (392)
T ss_dssp GTTTTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-T-TCCBSSSSGGGBCTTEEEEECC
T ss_pred HHhhhcccCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH-c-CCeeccCCccccCCceEEEECC
Confidence 001234557888988888888889865544 788999999999999999988 4 776654222 123444555554
Q ss_pred -cCCcHHHHHhc--C-CEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCC-CCCHHHHHHHHHHHHHh
Q psy15216 1696 -FIEGESLLMAI--K-DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGR-FTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1696 -~~~~~~~~~~L--~-gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~-~~t~edid~li~~L~~~ 1765 (2602)
+.+..++...| + ||.+++|..+.. .+++|+++.. ++|.+|+++++++|++.
T Consensus 312 ~~~~~~~l~~~L~~~~gi~v~~g~~~~~-------------------~~~lRi~~~~~~~~~~~i~~~~~~l~~~ 367 (392)
T 2z9v_A 312 DGVDEKALRQAARARYGVVFSSGRGETL-------------------GKLTRIGHMGPTAQPIYAIAALTALGGA 367 (392)
T ss_dssp TTCCHHHHHHHHHHHHCEECEECCGGGT-------------------TTEEEEECCGGGCSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhcCCEEEecCCCCCC-------------------CCeEEEeCcccccCHHHHHHHHHHHHHH
Confidence 34566777666 4 999988764322 2789999644 88999999999999874
|
| >3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-27 Score=311.57 Aligned_cols=329 Identities=16% Similarity=0.203 Sum_probs=263.9
Q ss_pred CCCCCCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCC--CcEEEeCCHHHHHHHHHHhccc
Q psy15216 3 YSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADP--REIIWTSGATESNNLAIKGAAH 80 (2602)
Q Consensus 3 ~a~~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~--~~Iv~t~g~T~al~~~~~~l~~ 80 (2602)
+.+..++++.+++++.+.+.. ..+....+..+++++++++++|+++ +++++|+|+|+|++ ++.++.
T Consensus 7 ~~gp~~~~~~v~~a~~~~~~~----------~~~~~~~~~~~~~~~~la~~~~~~~~~~~v~~~~g~t~al~-~~~~~~- 74 (384)
T 3zrp_A 7 HVGPTTIKEDVLVAGLENNVG----------FTSKEFVEALAYSLKGLRYVMGASKNYQPLIIPGGGTSAME-SVTSLL- 74 (384)
T ss_dssp CSSCSCCCHHHHHHTTCCSCC----------TTSHHHHHHHHHHHHHHHHHHTCCTTSEEEEEESCHHHHHH-HGGGGC-
T ss_pred cCCCCCCCHHHHHHhhccccc----------cccHHHHHHHHHHHHHHHHHhCCCCCCcEEEEcCCcHHHHH-HHHhhc-
Confidence 456668889988887765431 1133446788999999999999987 78999999999999 888776
Q ss_pred ccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccC-CceEEEEecccCcccccccHHHHH
Q psy15216 81 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS-DTILVSVMLVNNEIGVIQPILEIG 159 (2602)
Q Consensus 81 ~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~-~tklv~i~~~~npTG~~~~l~~I~ 159 (2602)
++||+|+++++.|++. .+...++..|++++.++.++++.+|++++++++++ ++++|++++++||||.++|+++|.
T Consensus 75 ---~~gd~vi~~~~~~~~~-~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~ 150 (384)
T 3zrp_A 75 ---KPNDKILVVSNGVFGD-RWEQIFKRYPVNVKVLRPSPGDYVKPGEVEEEVRKSEYKLVALTHVETSTGVREPVKDVI 150 (384)
T ss_dssp ---CTTCEEEEECSSHHHH-HHHHHHTTSSCEEEEECCSTTCCCCHHHHHHHHHHSCEEEEEEESEETTTTEECCHHHHH
T ss_pred ---CCCCEEEEecCCcchH-HHHHHHHHcCCcEEEecCCCCCCCCHHHHHHHHHhCCCcEEEEeCCCCCCceECcHHHHH
Confidence 8999999999998773 23344466799999999988888999999999987 899999999999999999999999
Q ss_pred HHHHhcCCEEEEecccccccccccCCCCCccEEEecccc-ccCCCCcEEEEEecCCCCcc-cceecCCC-----------
Q psy15216 160 ELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRI-EAQIHGGG----------- 226 (2602)
Q Consensus 160 ~la~~~g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K-~~Gp~G~G~l~~~~~~~~~l-~~~~~g~~----------- 226 (2602)
++|++||+++|+|++|+.+..++++..+++|++++|+|| ++|+.|+|++++++++++.+ .+......
T Consensus 151 ~l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (384)
T 3zrp_A 151 NKIRKYVELIVVDGVSSVGAEEVKAEEWNVDVYLTASQKALGSAAGLGLLLLSPKALSILDSQNSIAGYYLDLRNWLPVM 230 (384)
T ss_dssp HHHGGGEEEEEEECTTTTTTSCCCTTTTTCSEEEEETTSTTCCCSSEEEEEECHHHHHHHHHCCCSCCSTTCHHHHHHHH
T ss_pred HHHHhcCCEEEEECcccccCccccccccCCCEEEecCcccccCCCceEEEEECHHHHHHhcCCCCCCcccccHHHHHHHH
Confidence 999999999999999999998888888889999999999 55789999999998876665 22110000
Q ss_pred cc----ccccccCcchhHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCC-CCCCCceEEEEEcc
Q psy15216 227 HE----YGLRSGTLATHQIVGMGEAFRLAR-IEMKEELKRILFLQKRLYNGLMESIEEIYINGDM-NNRIPHNLNISFNF 300 (2602)
Q Consensus 227 ~~----~~~~~gt~~~~~~~al~~al~~~~-~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~-~~~~~~~~~~~~~~ 300 (2602)
.. .....|+++...++++.+++++.. .++++..++++++++++.+.|.+ . ++++..+. ....+.++.+.++.
T Consensus 231 ~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~~~~~~ 308 (384)
T 3zrp_A 231 RGAEEGKAAYFATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIRAGLEA-L-GLEIVARRPESYSNTVTGVILKV 308 (384)
T ss_dssp HHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-T-TCCBSCSSGGGBCSSEEEEECSS
T ss_pred HhhcccCCCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH-C-CCeEccCcccccCccEEEEECCC
Confidence 00 122236889999999989998654 44889999999999999999988 4 77776554 22234555666666
Q ss_pred cChhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 301 IEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 301 ~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
.+..++.+.| +||.+++|..+.. +++|++++.+++++|+++++++|++.
T Consensus 309 ~~~~~~~~~l~~~gi~v~~g~~~~~--------------------~~iRi~~~~~~~~e~i~~~~~~l~~~ 359 (384)
T 3zrp_A 309 ADPQKVLAGTVNEGVEFAPGVHPAF--------------------KYFRIGHMGWVTPNDAIIAISVIERT 359 (384)
T ss_dssp SCHHHHHHHHHTTTCCCEECCCTTC--------------------CEEEEECCSSCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCEEEecCCCCCc--------------------CEEEEeccccCCHHHHHHHHHHHHHH
Confidence 6677777777 7898887764311 68999999999999999999999964
|
| >3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-27 Score=317.18 Aligned_cols=346 Identities=16% Similarity=0.170 Sum_probs=265.6
Q ss_pred eeeeccCCC-CCCCHHHHHHHHHHHhhccCCCCCccchhH-HHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHH
Q psy15216 1394 TNIVFKDAT-TPIDPRVVDKMIPYLRVQFGNPASRNHIYG-WTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAI 1471 (2602)
Q Consensus 1394 ~~v~L~~~~-~~~~~~v~eal~~~l~~~~~np~~~~~~~~-~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al 1471 (2602)
..+|++.+. .+.+..+.+++.+.+..+ ++.+...|..+ ..+....+++++++++++|+++++|++|+|+|+++++++
T Consensus 67 ~~iyld~~~~g~~p~~v~~~i~~~l~~~-~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~t~g~t~al~~~~ 145 (465)
T 3e9k_A 67 NAIYFLGNSLGLQPKMVKTYLEEELDKW-AKIAAYGHEVGKRPWITGDESIVGLMKDIVGANEKEIALMNALTVNLHLLM 145 (465)
T ss_dssp BCEECBTTTSCCEETTHHHHHHHHHHHH-HHHGGGGGTSSSSCGGGTTHHHHGGGHHHHTCCGGGEEECSCHHHHHHHHH
T ss_pred CeEEecCCccCCChHHHHHHHHHHHHHH-HhhCCcccccCCccHHHhHHHHHHHHHHHcCCCcCCEEEECCHHHHHHHHH
Confidence 568898655 566677777777766432 11110000000 012234567899999999999899999999999999999
Q ss_pred HhhhhhhccCCCEEEEcCCCCcchHHHHH-HHHhCCcEE-----EEeccCCCCCcChhHHHhhcc---CCceEEEEeccc
Q psy15216 1472 KGAAHFYKKRGKHIITVQTEHKSVLDSIR-KLENDGFRV-----TYLKPKNNGLITLSQLEEKIC---SDTILVSVMLVN 1542 (2602)
Q Consensus 1472 ~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~-~~~~~G~~v-----~~v~~~~~~~id~d~l~~~i~---~~t~lv~l~~~~ 1542 (2602)
.++.. ...++++|+++.++|+++..++. .++..|+++ ..++.+.++.+|+++|+++|. ++|++|++++++
T Consensus 146 ~~~~~-~~~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~lv~~~~~~ 224 (465)
T 3e9k_A 146 LSFFK-PTPKRYKILLEAKAFPSDHYAIESQLQLHGLNIEESMRMIKPREGEETLRIEDILEVIEKEGDSIAVILFSGVH 224 (465)
T ss_dssp HHHCC-CCSSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHHHEEEECCCTTCSSCCHHHHHHHHHHHGGGEEEEEEESBC
T ss_pred HHhcc-ccCCCCEEEEcCCcCCchHHHHHHHHHHcCCcceeeeEEEecCCCCCccCHHHHHHHHHhcCCCeEEEEEeCcc
Confidence 99861 12345669999999999877665 345568764 344556678899999999996 789999999999
Q ss_pred cccccccChHHHHHHhhhcCCEEEEecccccCcccccCCCCCccEEEEcccccc--CCCceEEEEEecCCCCcccccccc
Q psy15216 1543 NEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIY--GPKGIGALYIRRNPRTRIEAQIHG 1620 (2602)
Q Consensus 1543 n~tG~~~~l~~I~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K~~--gp~G~G~l~~~~~~~~~l~~~~~g 1620 (2602)
||||.+.|+++|.++|++||+++++|++|+.|..++++.++++|++++|+||++ ||.|+|++++++++.+.+.+...|
T Consensus 225 n~tG~~~~l~~i~~la~~~g~~vi~D~a~~~g~~~~~~~~~~~D~~~~s~~K~l~~gp~~~g~l~~~~~~~~~~~~~~~g 304 (465)
T 3e9k_A 225 FYTGQHFNIPAITKAGQAKGCYVGFDLAHAVGNVELYLHDWGVDFACWCSYKYLNAGAGGIAGAFIHEKHAHTIKPALVG 304 (465)
T ss_dssp TTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCCEEEECSSSTTCCCTTCCCEEEECGGGTTTSCCSSCC
T ss_pred cCcceeecHHHHHHHHHHcCCEEEEEhhhhcCCcCCchhhcCCCEEEECcccccccCCCceEEEEEcHHHHhhcCCcccC
Confidence 999999999999999999999999999999999999888889999999999955 787899999999888877765544
Q ss_pred CCc------------------cccCCCCCcchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcC--------
Q psy15216 1621 GGH------------------EYGLRSGTLATHQIVGMGEAFRLARI-EMKEELKRILFLQKRLYNGLMESI-------- 1673 (2602)
Q Consensus 1621 ~~~------------------~~~~~~gt~~~~~~~al~~aL~~~~~-~~~~~~~~~~~l~~~l~~~L~~~~-------- 1673 (2602)
|.. ..+++.||++...+.++.++++.... ++++++++..++++++.+.|.+..
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 384 (465)
T 3e9k_A 305 WFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLEIFKQATMKALRKKSVLLTGYLEYLIKHNYGKDKAATK 384 (465)
T ss_dssp GGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCC-------
T ss_pred ccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhccccccccC
Confidence 321 24566789999999999999996554 589999999999999999998732
Q ss_pred -CcEEEeCCCCC-CCCceEEEEEecCCcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEec-CC
Q psy15216 1674 -EEIYINGDMNN-RIPHNLNISFNFIEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTI-GR 1748 (2602)
Q Consensus 1674 -~gl~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~-~~ 1748 (2602)
+++.+..+.+. .......+.++ .+..++...| +||.++.+ . .++||+|+ +.
T Consensus 385 ~~g~~~~~p~~~~~~g~~~~~~~~-~~~~~l~~~L~~~Gi~v~~~----~-------------------~~~iRis~~~~ 440 (465)
T 3e9k_A 385 KPVVNIITPSHVEERGCQLTITFS-VPNKDVFQELEKRGVVCDKR----N-------------------PNGIRVAPVPL 440 (465)
T ss_dssp --CEEECSCSSGGGBCSCEEEEEC-CTTCCHHHHHHTTTEECEEE----T-------------------TTEEEEBCCTT
T ss_pred CCCeEEeCCCCHhhcccEEEEEec-CCHHHHHHHHHHCCEEEecC----C-------------------CCEEEEeCccc
Confidence 68888865421 12334555555 3445566665 78887621 1 27899998 79
Q ss_pred CCCHHHHHHHHHHHHHh
Q psy15216 1749 FTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1749 ~~t~edid~li~~L~~~ 1765 (2602)
++|.+||++++++|++.
T Consensus 441 ~~t~edi~~~~~~l~~~ 457 (465)
T 3e9k_A 441 YNSFHDVYKFTNLLTSI 457 (465)
T ss_dssp TCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999999974
|
| >2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.4e-27 Score=308.41 Aligned_cols=330 Identities=16% Similarity=0.205 Sum_probs=261.4
Q ss_pred CCCCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCC-cEEEeCCHHHHHHHHHHhhhhhh
Q psy15216 1400 DATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPR-EIIWTSGATESNNLAIKGAAHFY 1478 (2602)
Q Consensus 1400 ~~~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~-~iv~t~gaT~al~~al~~l~~~~ 1478 (2602)
.+..+.++.+.+++.+.+.. + + .........++|+++++++|++++ ++++|+|+|+|+..++.++.
T Consensus 25 ~g~~~~~~~v~~a~~~~~~~-----~---~--~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~--- 91 (393)
T 2huf_A 25 PGPSNAPQRVLDAMSRPILG-----H---L--HPETLKIMDDIKEGVRYLFQTNNIATFCLSASGHGGMEATLCNLL--- 91 (393)
T ss_dssp SSCCCCCHHHHHHTTSCCCC-----T---T--SHHHHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHHC---
T ss_pred CCCCCCCHHHHHHHHhhhcc-----C---C--CHHHHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHHh---
Confidence 44567788888887665432 1 1 223456789999999999999875 79999999999999999986
Q ss_pred ccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccC-CceEEEEeccccccccccChHHHHHH
Q psy15216 1479 KKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS-DTILVSVMLVNNEIGVIQPILEIGEL 1557 (2602)
Q Consensus 1479 ~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~-~t~lv~l~~~~n~tG~~~~l~~I~~i 1557 (2602)
++||+|++++++|+++. ....++..|++++.++.++++.+|+++|++++++ ++++|++++++||||.++|+++|.++
T Consensus 92 -~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~~ 169 (393)
T 2huf_A 92 -EDGDVILIGHTGHWGDR-SADMATRYGADVRVVKSKVGQSLSLDEIRDALLIHKPSVLFLTQGDSSTGVLQGLEGVGAL 169 (393)
T ss_dssp -CTTCEEEEEESSHHHHH-HHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHH
T ss_pred -CCCCEEEEECCCcchHH-HHHHHHHcCCeeEEEeCCCCCCCCHHHHHHHHhccCCcEEEEEccCCCccccCCHHHHHHH
Confidence 79999999999999853 3344455699999999988888999999999988 89999999999999999999999999
Q ss_pred hhhcCCEEEEecccccCcccccCCCCCccEEEEcccc-ccCCCceEEEEEecCCCCccccc-------c---------cc
Q psy15216 1558 CRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQ-------I---------HG 1620 (2602)
Q Consensus 1558 a~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K-~~gp~G~G~l~~~~~~~~~l~~~-------~---------~g 1620 (2602)
|++||+++|+|++|++|..++++..+++|++++|+|| ++||+|+|++++++++++.+.+. + ++
T Consensus 170 ~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~sK~l~g~~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (393)
T 2huf_A 170 CHQHNCLLIVDTVASLGGAPMFMDRWEIDAMYTGSQKVLGAPPGITPVSFSHRAVERYKRRNTKVKVYYWDMSLVGDYWG 249 (393)
T ss_dssp HHHTTCEEEEECTTTBTTBCCCTTTTTCSEEECCSSSTTCCCSSCEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTT
T ss_pred HHHcCCEEEEEcccccCCCCcchhhcCccEEEECCCcccccCCCeEEEEECHHHHHHHhhcCCCCceEEEchHHHHhhhc
Confidence 9999999999999999888777777789999999999 67899999999987765544321 2 11
Q ss_pred CCccccCCCCCcchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEe-cCC
Q psy15216 1621 GGHEYGLRSGTLATHQIVGMGEAFRLARI-EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN-FIE 1698 (2602)
Q Consensus 1621 ~~~~~~~~~gt~~~~~~~al~~aL~~~~~-~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~-~~~ 1698 (2602)
+....++..++++...+.++.++++.... ++++..+++.++++++.+.|.+ . ++.+..+.....+.+..+.++ +.+
T Consensus 250 ~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~~~~~~~~ 327 (393)
T 2huf_A 250 CFGRPRIYHHTISSTLLYGLREAIAMACEEGLPALIARHEDCAKRLYRGLQD-A-GFELYADPKDRLSTVTTIKVPQGVD 327 (393)
T ss_dssp CSSSCCCCSCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-T-TCCBSSCGGGBCTTEEEEECCTTCC
T ss_pred cccccCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH-c-CCeeccCccccCCcEEEEEcCCCCC
Confidence 12234566789999999999889986543 5888999999999999999988 4 776654432223344555554 345
Q ss_pred cHHHHHhc---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCC-CCHHHHHHHHHHHHHh
Q psy15216 1699 GESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRF-TTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1699 ~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~-~t~edid~li~~L~~~ 1765 (2602)
..++...| +||.+++|..|.. .+++||+++.+ ++.+++++++++|++.
T Consensus 328 ~~~~~~~L~~~~gi~v~~g~~~~~-------------------~~~~Ri~~~~~~~~~e~i~~~~~~l~~~ 379 (393)
T 2huf_A 328 WLKAAQYAMKTYLVEISGGLGPTA-------------------GQVFRIGLMGQNATTERVDRVLQVFQEA 379 (393)
T ss_dssp HHHHHHHHHHHHCEECBCCCGGGT-------------------TTEEEEECCGGGCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCEEEecCccccc-------------------CCEEEEEcccCcCCHHHHHHHHHHHHHH
Confidence 66777666 3999998775532 27899999554 5789999999999873
|
| >2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-27 Score=305.99 Aligned_cols=328 Identities=15% Similarity=0.155 Sum_probs=262.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCC--CCcEEEeCCHHHHHHHHHHhcc
Q psy15216 2 DYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYAD--PREIIWTSGATESNNLAIKGAA 79 (2602)
Q Consensus 2 d~a~~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~--~~~Iv~t~g~T~al~~~~~~l~ 79 (2602)
.+++.+++|+.+++++.+.+.. + .++......+++|+++++++|++ ++++++|+|+|+|+++++.++.
T Consensus 4 ~~~gp~~~~~~v~~a~~~~~~~-----~-----~~~~~~~~~~~l~~~la~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~ 73 (353)
T 2yrr_A 4 LTPGPTPIPERVQKALLRPMRG-----H-----LDPEVLRVNRAIQERLAALFDPGEGALVAALAGSGSLGMEAGLANLD 73 (353)
T ss_dssp CSSSSCCCCHHHHGGGGSCCCC-----T-----TCHHHHHHHHHHHHHHHHHHCCCTTCEEEEESSCHHHHHHHHHHTCS
T ss_pred CCCCCCCCCHHHHHHHhccccc-----c-----cCHHHHHHHHHHHHHHHHHhCCCCCCceEEEcCCcHHHHHHHHHHhc
Confidence 4567778999999888776532 1 12344567899999999999985 6789999999999999999987
Q ss_pred cccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccC-CceEEEEecccCcccccccHHHH
Q psy15216 80 HFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS-DTILVSVMLVNNEIGVIQPILEI 158 (2602)
Q Consensus 80 ~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~-~tklv~i~~~~npTG~~~~l~~I 158 (2602)
+ |+|++++++|+++ .+...++..|++++.++.++++.+|+++|++++++ ++++|++++++||||.++|+++|
T Consensus 74 ----~--d~vl~~~~~~~~~-~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i 146 (353)
T 2yrr_A 74 ----R--GPVLVLVNGAFSQ-RVAEMAALHGLDPEVLDFPPGEPVDPEAVARALKRRRYRMVALVHGETSTGVLNPAEAI 146 (353)
T ss_dssp ----C--CCEEEEECSHHHH-HHHHHHHHTTCCEEEEECCTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCHHHH
T ss_pred ----C--CcEEEEcCCCchH-HHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHHhCCCCEEEEEccCCCcceecCHHHH
Confidence 3 8999999999997 44455566799999999988888999999999987 89999999999999999999999
Q ss_pred HHHHHhcCCEEEEecccccccccccCCCCCccEEEecccc-ccCCCCcEEEEEecCCCCcccceecCCC---------cc
Q psy15216 159 GELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGG---------HE 228 (2602)
Q Consensus 159 ~~la~~~g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K-~~Gp~G~G~l~~~~~~~~~l~~~~~g~~---------~~ 228 (2602)
.++|++||+++|+|++|+++..++++..+++|++++|+|| ++|++|+|++++++++++.+.. ..++. ..
T Consensus 147 ~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~ 225 (353)
T 2yrr_A 147 GALAKEAGALFFLDAVTTLGMLPFSMRAMGVDYAFTGSQKCLSAPPGLAPIAASLEARKAFTG-KRGWYLDLARVAEHWE 225 (353)
T ss_dssp HHHHHHHTCEEEEECTTTTTTSCCCHHHHTCSEEECCTTSTTCCCSSCEEEEECHHHHHHCCC-CSCSTTCHHHHHHHHT
T ss_pred HHHHHHcCCeEEEEcCcccccccccccccCceEEEecCcccccCCCceEEEEECHHHHHHhcc-CCCccccHHHHhhhhh
Confidence 9999999999999999998877766666678999999999 6788999999999887665542 01110 01
Q ss_pred ccccccCcchhHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEc-ccChhHH
Q psy15216 229 YGLRSGTLATHQIVGMGEAFRLAR-IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN-FIEGESL 306 (2602)
Q Consensus 229 ~~~~~gt~~~~~~~al~~al~~~~-~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~-~~~~~~~ 306 (2602)
.....++++...+.++.++++... .++++..++++++++++.+.|++ . ++++..++. ..+.++.+.++ ..+..++
T Consensus 226 ~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 302 (353)
T 2yrr_A 226 RGGYHHTTPVLLHYALLEALDLVLEEGVAARERRAREVYAWVLEELKA-R-GFRPYPKAS-PLPTVLVVRPPEGVDADRL 302 (353)
T ss_dssp TCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-T-TCEESCSSS-BCTTEEEEECCTTCCHHHH
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-C-CCccccCcc-CCCeEEEEECCCCCCHHHH
Confidence 234467888888888888888654 44889999999999999999988 4 888875431 23444456664 4466777
Q ss_pred HHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHH-HHHHHHHhh
Q psy15216 307 LMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEID-FTIKLLKMK 369 (2602)
Q Consensus 307 ~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid-~li~~L~~~ 369 (2602)
.+.| +||.+++|..|.. .+++|++++.+++.+|++ +++++|++.
T Consensus 303 ~~~l~~~gi~v~~g~~~~~-------------------~~~iRi~~~~~~~~~~~~~~~~~~l~~~ 349 (353)
T 2yrr_A 303 VRALYAEGVAVAGGIGPTR-------------------GQVLRLGLMGEGARREAYQAFLKALDRA 349 (353)
T ss_dssp HHHHHHTTEECEECCGGGT-------------------TTCEEEECSGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCEEEeCCccccC-------------------CCeEEEecCccCCHHHHHHHHHHHHHHH
Confidence 7777 7999998875532 278999998888999999 999999864
|
| >3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-27 Score=313.13 Aligned_cols=307 Identities=18% Similarity=0.230 Sum_probs=253.0
Q ss_pred hhHHHHHHHHHHHHHHHhCCCCCcEE-EeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEE
Q psy15216 37 WTAEKAIEKARNEVAQLIYADPREII-WTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTY 115 (2602)
Q Consensus 37 ~~~~~~~~~~r~~lA~~~g~~~~~Iv-~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~ 115 (2602)
....+..+++++++++++|+++++++ +++|+|+|+++++.++. ++||+|++++++|+++. ....++..|++++.
T Consensus 40 ~~~~~~~~~l~~~la~~~g~~~~~~~~~~~s~t~al~~~~~~l~----~~gd~Vl~~~~~~~~~~-~~~~~~~~g~~~~~ 114 (416)
T 3isl_A 40 PAFTGIMNETMEMLRELFQTKNRWAYPIDGTSRAGIEAVLASVI----EPEDDVLIPIYGRFGYL-LTEIAERYGANVHM 114 (416)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCSEEEEEESCHHHHHHHHHHHHC----CTTCEEEEEESSHHHHH-HHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCcEEEecCcHHHHHHHHHHHhc----CCCCEEEEecCCcccHH-HHHHHHhcCCeeEE
Confidence 34467789999999999999877665 99999999999999987 89999999999998832 23344566999999
Q ss_pred eccCCCCccChHHHHhhcc-CCceEEEEecccCcccccccHHHHHHHHHhcCCEEEEecccccccccccCCCCCccEEEe
Q psy15216 116 LKPKNNGLITLSQLEEKIC-SDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSF 194 (2602)
Q Consensus 116 v~~~~~~~ld~e~l~~~i~-~~tklv~i~~~~npTG~~~~l~~I~~la~~~g~~livD~a~a~g~~~~dl~~~~~D~~~~ 194 (2602)
++.++++.+|+++|+++++ +++++|++++++||||.+.|+++|.++|++||+++|+|++|+.+..++++..+++|++++
T Consensus 115 v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~ 194 (416)
T 3isl_A 115 LECEWGTVFDPEDIIREIKKVKPKIVAMVHGETSTGRIHPLKAIGEACRTEDALFIVDAVATIGGCEVKVDEWKIDAAIG 194 (416)
T ss_dssp EECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCHHHHHHHHHTTCEEEEECTTTTTTSCCCTTTTTCSEEEC
T ss_pred EecCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCceecCHHHHHHHHHHcCCEEEEECCccccCCCcchhhcCCCEEEe
Confidence 9999888999999999998 689999999999999999999999999999999999999999999888888889999999
Q ss_pred cccc-ccCCCCcEEEEEecCCCCccccee---cCC------------C----------------ccccccccCcchhHHH
Q psy15216 195 SAHK-IYGPKGIGALYIRRNPRTRIEAQI---HGG------------G----------------HEYGLRSGTLATHQIV 242 (2602)
Q Consensus 195 S~~K-~~Gp~G~G~l~~~~~~~~~l~~~~---~g~------------~----------------~~~~~~~gt~~~~~~~ 242 (2602)
|+|| ++|+.|+|++++++++++.+.+.. .|| . ...++..++++...++
T Consensus 195 s~~K~l~g~~g~g~~~~~~~~~~~~~~~~~~~~Gw~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (416)
T 3isl_A 195 GTQKCLSVPSGMAPITYNERVADVIAARKKVERGIATQADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLY 274 (416)
T ss_dssp CSSSTTCCCSSEEEEEECHHHHHHHHTC------------------CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHH
T ss_pred cCccccCCCCCeEEEEECHHHHHHhhccccccccccccccchhccCCCCCCccccchHHHHhhhcccCCCCCCCCHHHHH
Confidence 9999 689999999999988766655321 111 0 1334567899999999
Q ss_pred HHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEc-ccChhHHHHHh--C-CeEEcc
Q psy15216 243 GMGEAFRLARIE-MKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN-FIEGESLLMAI--K-DIAVSS 317 (2602)
Q Consensus 243 al~~al~~~~~~-~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~L--~-gI~v~~ 317 (2602)
++.++++..... +++..+++.++++++.+.|.+ +++++..++....+.+..+.++ ..+..++.+.| + ||.+++
T Consensus 275 a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gi~v~~ 352 (416)
T 3isl_A 275 ALREGVRLVLEEGLETRFERHRHHEAALAAGIKA--MGLRLFGDDSCKMPVVTCVEIPGGIDGESVRDMLLAQFGIEIAS 352 (416)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH--TTCCBCSCGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCEECBC
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH--cCCEeccCccccCCcEEEEeCCCCCCHHHHHHHHHHhCCEEEec
Confidence 999999865544 899999999999999999988 4888776654444566667765 45677787777 4 999987
Q ss_pred cccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHH-HHHHHHHHHhh
Q psy15216 318 GSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKE-IDFTIKLLKMK 369 (2602)
Q Consensus 318 g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~ed-id~li~~L~~~ 369 (2602)
|.... .++++||+++.+++.+| +++++++|++.
T Consensus 353 g~~~~-------------------~~~~iRi~~~~~~~~~e~i~~~~~~l~~~ 386 (416)
T 3isl_A 353 SFGPL-------------------AGKIWRIGTMGYSCRKENVLFVLAGLEAV 386 (416)
T ss_dssp CCSTT-------------------TTTEEEEECCGGGCSHHHHHHHHHHHHHH
T ss_pred CCCCC-------------------CCCEEEEecccCCCcHHHHHHHHHHHHHH
Confidence 75321 13799999977777777 99999999964
|
| >3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-26 Score=298.81 Aligned_cols=331 Identities=14% Similarity=0.124 Sum_probs=259.4
Q ss_pred ccCCCCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCC-CCcEEEeCCHHHHHHHHHHhhhh
Q psy15216 1398 FKDATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYAD-PREIIWTSGATESNNLAIKGAAH 1476 (2602)
Q Consensus 1398 L~~~~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~-~~~iv~t~gaT~al~~al~~l~~ 1476 (2602)
++....+.++.+++++.+.+..... +.+.....+....+++++++++++|.+ ++++++|+|+|+|+++++.++.
T Consensus 8 ~~p~p~~~~~~v~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~al~~~~~~l~- 82 (362)
T 3ffr_A 8 FTPGPSELYPTVRQHMITALDEKIG----VISHRSKKFEEVYKTASDNLKTLLELPSNYEVLFLASATEIWERIIQNCV- 82 (362)
T ss_dssp ECSSSCCCCTTHHHHHHHHHHTTTT----TSCTTSHHHHHHHHHHHHHHHHHTTCCTTEEEEEESCHHHHHHHHHHHHC-
T ss_pred ccCCCcCCCHHHHHHHHHHhcCCcc----CcCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCchHHHHHHHHhcc-
Confidence 3445567788999998888765220 011224455678899999999999984 5789999999999999999987
Q ss_pred hhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccCCceEEEEeccccccccccChHHHHH
Q psy15216 1477 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGE 1556 (2602)
Q Consensus 1477 ~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~~ 1556 (2602)
++ .+++..+.|++. .....++..|++++.++.+.++.+|+++|+ ++++|++|++++++||||.++|+++|.+
T Consensus 83 ---~~--~~i~~~~~~~~~-~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~--~~~~~~~v~~~~~~nptG~~~~l~~i~~ 154 (362)
T 3ffr_A 83 ---EK--KSFHCVNGSFSK-RFYEFAGELGREAYKEEAAFGKGFYPADIT--VPADAEIICLTHNETSSGVSMPVEDINT 154 (362)
T ss_dssp ---SS--EEEEEECSHHHH-HHHHHHHHTTCEEEEEECCTTCCCCGGGCC--CCTTCCEEEEESEETTTTEECCHHHHTT
T ss_pred ---CC--cEEEEcCcHHHH-HHHHHHHHhCCCeEEEecCCCCCCCHHHHh--ccCCccEEEEEcCCCCcceeCCHHHHHH
Confidence 56 555544444442 223345566999999999888889999999 8899999999999999999999999999
Q ss_pred Hhhhc-CCEEEEecccccCcccccCCCCCccEEEEccccccC-CCceEEEEEecCCCCccccccccCCcc----------
Q psy15216 1557 LCRSK-GVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYG-PKGIGALYIRRNPRTRIEAQIHGGGHE---------- 1624 (2602)
Q Consensus 1557 ia~~~-gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K~~g-p~G~G~l~~~~~~~~~l~~~~~g~~~~---------- 1624 (2602)
+|++| |+++|+|++|+.+..++++.. +|++++|+||+++ |+|+|++++++++++.+.+...|++..
T Consensus 155 la~~~p~~~li~D~a~~~~~~~~~~~~--~d~~~~s~~K~~~~~~G~g~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~ 232 (362)
T 3ffr_A 155 FRDKNKDALIFVDAVSSLPYPKFDWTK--IDSVFFSVQKCFGLPAGLGVWILNDRVIEKSKALLAKRKSIGTYHTIPSML 232 (362)
T ss_dssp SGGGSTTSEEEEECTTTTTSSCCCTTS--CSEEEEETTSTTCCCSCCEEEEEEHHHHHHHHHHHHTTCCCCSTTSHHHHH
T ss_pred HHHhCCCCEEEEecccccCCcccChhH--CcEEEEecccccCCCCceEEEEECHHHHHHhhhccccCCCCcccccHHHHH
Confidence 99999 999999999999987777654 8999999999766 999999999988777666554433211
Q ss_pred ----ccCCCCCcchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCC-CCCCceEEEEEecCC
Q psy15216 1625 ----YGLRSGTLATHQIVGMGEAFRLAR-IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMN-NRIPHNLNISFNFIE 1698 (2602)
Q Consensus 1625 ----~~~~~gt~~~~~~~al~~aL~~~~-~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~-~~~~~~~~~~~~~~~ 1698 (2602)
.....++++...+.++..++++.. .+++++.+++.++++++++.|.+ .|++.+..+.. ...+....+.++. +
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~~~~~~~~~~~~~~~-~ 310 (362)
T 3ffr_A 233 EKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAALINTYIES-SKVFSFGVEDAKLRSMTTIVANTTM-L 310 (362)
T ss_dssp HHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-CSSEEESSSCGGGBCSSEEEEEESS-C
T ss_pred HHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHH-ccCceeccCChhhcCCceEEEecCC-C
Confidence 122367889999999988988543 45889999999999999999987 78999876322 2334455555555 6
Q ss_pred cHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1699 GESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1699 ~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
..++...| +||.+++|..+.. .+++|+|++.+++.+++++++++|++
T Consensus 311 ~~~~~~~l~~~gi~~~~g~~~~~-------------------~~~iRis~~~~~~~e~i~~l~~~l~~ 359 (362)
T 3ffr_A 311 PGEINKILEPFDMAVGAGYGSKK-------------------ETQIRIANFPAHSLEQVHKLVQTLKE 359 (362)
T ss_dssp HHHHHHHHGGGTEEEEECSGGGT-------------------TTEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCeEEecCccccC-------------------CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 67777766 7999998865433 27899999999999999999999986
|
| >3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.4e-27 Score=311.03 Aligned_cols=307 Identities=18% Similarity=0.226 Sum_probs=251.1
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCcEE-EeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEE
Q psy15216 1433 WTAEKAIEKARNEVAQLIYADPREII-WTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTY 1511 (2602)
Q Consensus 1433 ~~~~~~~~~lr~~ia~~~g~~~~~iv-~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~ 1511 (2602)
....+...++++++++++|+++++++ +++|+|+|+..++.++. ++||+|++++++|+++. ....++..|++++.
T Consensus 40 ~~~~~~~~~l~~~la~~~g~~~~~~~~~~~s~t~al~~~~~~l~----~~gd~Vl~~~~~~~~~~-~~~~~~~~g~~~~~ 114 (416)
T 3isl_A 40 PAFTGIMNETMEMLRELFQTKNRWAYPIDGTSRAGIEAVLASVI----EPEDDVLIPIYGRFGYL-LTEIAERYGANVHM 114 (416)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCSEEEEEESCHHHHHHHHHHHHC----CTTCEEEEEESSHHHHH-HHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCcEEEecCcHHHHHHHHHHHhc----CCCCEEEEecCCcccHH-HHHHHHhcCCeeEE
Confidence 34567789999999999999877665 89999999999999886 89999999999998732 23334556999999
Q ss_pred eccCCCCCcChhHHHhhcc-CCceEEEEeccccccccccChHHHHHHhhhcCCEEEEecccccCcccccCCCCCccEEEE
Q psy15216 1512 LKPKNNGLITLSQLEEKIC-SDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSF 1590 (2602)
Q Consensus 1512 v~~~~~~~id~d~l~~~i~-~~t~lv~l~~~~n~tG~~~~l~~I~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~ 1590 (2602)
++.++++.+|+++|+++++ ++|++|++++++||||.+.|+++|.++|++||+++|+|++|+.|..++++..+++|++++
T Consensus 115 v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~ 194 (416)
T 3isl_A 115 LECEWGTVFDPEDIIREIKKVKPKIVAMVHGETSTGRIHPLKAIGEACRTEDALFIVDAVATIGGCEVKVDEWKIDAAIG 194 (416)
T ss_dssp EECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCHHHHHHHHHTTCEEEEECTTTTTTSCCCTTTTTCSEEEC
T ss_pred EecCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCceecCHHHHHHHHHHcCCEEEEECCccccCCCcchhhcCCCEEEe
Confidence 9999888999999999998 699999999999999999999999999999999999999999999888888889999999
Q ss_pred cccc-ccCCCceEEEEEecCCCCcccccc---ccC----------------------------CccccCCCCCcchhHHH
Q psy15216 1591 SAHK-IYGPKGIGALYIRRNPRTRIEAQI---HGG----------------------------GHEYGLRSGTLATHQIV 1638 (2602)
Q Consensus 1591 S~~K-~~gp~G~G~l~~~~~~~~~l~~~~---~g~----------------------------~~~~~~~~gt~~~~~~~ 1638 (2602)
|+|| ++||.|+|++++++++++.+.+.. .|| .....+..++++...+.
T Consensus 195 s~~K~l~g~~g~g~~~~~~~~~~~~~~~~~~~~Gw~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (416)
T 3isl_A 195 GTQKCLSVPSGMAPITYNERVADVIAARKKVERGIATQADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLY 274 (416)
T ss_dssp CSSSTTCCCSSEEEEEECHHHHHHHHTC------------------CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHH
T ss_pred cCccccCCCCCeEEEEECHHHHHHhhccccccccccccccchhccCCCCCCccccchHHHHhhhcccCCCCCCCCHHHHH
Confidence 9999 689999999999987665544321 011 12345567899999999
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEe-cCCcHHHHHhc--C-CEEEcc
Q psy15216 1639 GMGEAFRLARIE-MKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN-FIEGESLLMAI--K-DIAVSS 1713 (2602)
Q Consensus 1639 al~~aL~~~~~~-~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~L--~-gI~v~~ 1713 (2602)
++.++++..... +++..+++.++++++.+.|.+ +++.+..+.....+.+..+.++ ..+..++...| + ||.+++
T Consensus 275 a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gi~v~~ 352 (416)
T 3isl_A 275 ALREGVRLVLEEGLETRFERHRHHEAALAAGIKA--MGLRLFGDDSCKMPVVTCVEIPGGIDGESVRDMLLAQFGIEIAS 352 (416)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH--TTCCBCSCGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCEECBC
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH--cCCEeccCccccCCcEEEEeCCCCCCHHHHHHHHHHhCCEEEec
Confidence 999999866554 899999999999999999998 4777765544334556666665 45667777766 4 999987
Q ss_pred ccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHH-HHHHHHHHHHh
Q psy15216 1714 GSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKE-IDFTIKLLKMK 1765 (2602)
Q Consensus 1714 g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~ed-id~li~~L~~~ 1765 (2602)
|..... .+++|++++.+++.+| +++++++|++.
T Consensus 353 g~~~~~-------------------~~~iRi~~~~~~~~~e~i~~~~~~l~~~ 386 (416)
T 3isl_A 353 SFGPLA-------------------GKIWRIGTMGYSCRKENVLFVLAGLEAV 386 (416)
T ss_dssp CCSTTT-------------------TTEEEEECCGGGCSHHHHHHHHHHHHHH
T ss_pred CCCCCC-------------------CCEEEEecccCCCcHHHHHHHHHHHHHH
Confidence 763221 3799999988777777 99999999974
|
| >3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.5e-27 Score=309.29 Aligned_cols=330 Identities=17% Similarity=0.216 Sum_probs=263.2
Q ss_pred CCCCCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCc-EEEeCCHHHHHHHHHHhccccc
Q psy15216 4 SATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE-IIWTSGATESNNLAIKGAAHFY 82 (2602)
Q Consensus 4 a~~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~-Iv~t~g~T~al~~~~~~l~~~~ 82 (2602)
.+..++++.+.+++.+.+. . ..........+++++++++++|+++++ +++++|+++|+++++.++.
T Consensus 19 pgp~~~~~~v~~a~~~~~~----~------~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~sgt~al~~~~~~~~--- 85 (411)
T 3nnk_A 19 PGPINADPRVLRAMSSQLI----G------QYDPAMTHYMNEVMALYRGVFRTENRWTMLVDGTSRAGIEAILVSAI--- 85 (411)
T ss_dssp SSCCCCCHHHHHHHTSCCC----C------TTCHHHHHHHHHHHHHHHHHHTCCCSEEEEEESCHHHHHHHHHHHHC---
T ss_pred CCCCCCCHHHHHHhhcccc----c------cccHHHHHHHHHHHHHHHHHhCCCCCcEEEECCCcHHHHHHHHHHhc---
Confidence 3445677777777664321 0 112334467899999999999997665 8899999999999999987
Q ss_pred ccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccC-CceEEEEecccCcccccccHHHHHHH
Q psy15216 83 KKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS-DTILVSVMLVNNEIGVIQPILEIGEL 161 (2602)
Q Consensus 83 ~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~-~tklv~i~~~~npTG~~~~l~~I~~l 161 (2602)
++||+|+++.++|++.. ....++..|++++.++.+.++.+|+++|++++++ ++++|++++++||||.+.|+++|.++
T Consensus 86 -~~gd~Vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l 163 (411)
T 3nnk_A 86 -RPGDKVLVPVFGRFGHL-LCEIARRCRAEVHTIEVPWGEVFTPDQVEDAVKRIRPRLLLTVQGDTSTTMLQPLAELGEI 163 (411)
T ss_dssp -CTTCEEEEEECSHHHHH-HHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHH
T ss_pred -CCCCEEEEecCCchHHH-HHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHhhCCCeEEEEeCCCCCcceeccHHHHHHH
Confidence 89999999999998732 3344455699999999988888999999999986 89999999999999999999999999
Q ss_pred HHhcCCEEEEecccccccccccCCCCCccEEEecccc-ccCCCCcEEEEEecCCCCccccee------cCCCc-------
Q psy15216 162 CRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQI------HGGGH------- 227 (2602)
Q Consensus 162 a~~~g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K-~~Gp~G~G~l~~~~~~~~~l~~~~------~g~~~------- 227 (2602)
|++||+++|+|++|+.+..++++..+++|++++|+|| ++|+.|+|++++++++++.+.+.. .|++.
T Consensus 164 ~~~~~~~li~Dea~~~~~~~~~~~~~~~d~~~~s~~K~l~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~gg~~~~ 243 (411)
T 3nnk_A 164 CRRYDALFYTDATASLGGNPLETDVWGLDAVSAGMQKCLGGPSGTSPITLSARMEEAIRRRKCVEEGIRTDAHRDGDEEM 243 (411)
T ss_dssp HHHHTCEEEEECTTTBTTBCCCTTTTTCSEEECCSTTTTCCCSSEEEEEECHHHHHHHHTTCCCCGGGCCTTCCCCSSCC
T ss_pred HHHcCCEEEEECCcccCCcccchhccCCcEEEecCccccCCCCceEEEEECHHHHHHHhhcccccccccccccccccCCC
Confidence 9999999999999999998888888899999999999 589999999999988765544321 11110
Q ss_pred ----------------cccccccCcchhHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCC
Q psy15216 228 ----------------EYGLRSGTLATHQIVGMGEAFRLARI-EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRI 290 (2602)
Q Consensus 228 ----------------~~~~~~gt~~~~~~~al~~al~~~~~-~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~ 290 (2602)
..++..++++..+++++.++++.... ++++..+++.++++++.+.|.+ .++++..++....
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~--~g~~~~~~~~~~~ 321 (411)
T 3nnk_A 244 IYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQEGLDYGIARHKLHGDALVKGIQA--MGLETFGDLKHKM 321 (411)
T ss_dssp CSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH--TTCCBCSCGGGBC
T ss_pred CcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH--cCCEeCCCccccc
Confidence 23456689999999999899986544 4889999999999999999988 3777776554444
Q ss_pred CceEEEEEc-ccChhHHHHHh--C-CeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEec-CCCCCHHHHHHHHHH
Q psy15216 291 PHNLNISFN-FIEGESLLMAI--K-DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTI-GRFTTEKEIDFTIKL 365 (2602)
Q Consensus 291 ~~~~~~~~~-~~~~~~~~~~L--~-gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~-~~~~t~edid~li~~ 365 (2602)
+.+..+.++ ..+..++...| + ||.+++|.... ..+++||++ +..++++|+++++++
T Consensus 322 ~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~~~-------------------~~~~iRi~~~~~~~~~~~i~~~~~~ 382 (411)
T 3nnk_A 322 NNVLGVVIPQGINGDQARKLMLEDFGIEIGTSFGPL-------------------HGKVWRIGTMGYNARKDCVMTTLSA 382 (411)
T ss_dssp SSEEEEECCTTCCHHHHHHHHHHHHSEEEEECCGGG-------------------TTTEEEEECCGGGCSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCeEEeCccCCC-------------------CCCEEEEeCccCcCCHHHHHHHHHH
Confidence 566667765 45677777766 4 99999774321 137999998 666789999999999
Q ss_pred HHhh
Q psy15216 366 LKMK 369 (2602)
Q Consensus 366 L~~~ 369 (2602)
|++.
T Consensus 383 l~~~ 386 (411)
T 3nnk_A 383 LEAV 386 (411)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9964
|
| >1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.95 E-value=4.7e-27 Score=307.07 Aligned_cols=331 Identities=15% Similarity=0.196 Sum_probs=262.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCC-cEEEeCCHHHHHHHHHHhcc
Q psy15216 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPR-EIIWTSGATESNNLAIKGAA 79 (2602)
Q Consensus 1 Ld~a~~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~-~Iv~t~g~T~al~~~~~~l~ 79 (2602)
||+++.+++++.+.+++.+.+.. + ++....+..+++++++++++|++++ ++++|+|+|+|+++++.++.
T Consensus 37 l~~~~~~~~~~~v~~a~~~~~~~-----~-----~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~al~~~~~~~~ 106 (393)
T 1vjo_A 37 LLGPGPSNAHPSVLQAMNVSPVG-----H-----LDPAFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANAV 106 (393)
T ss_dssp ECSSSCCCCCHHHHHHHSSCCCC-----T-----TSHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHC
T ss_pred eccCCCCCCCHHHHHHHhccccc-----c-----cCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCchHHHHHHHHHhcc
Confidence 46777788999999888775532 1 1223556889999999999999888 89999999999999999987
Q ss_pred cccccCCCEEEEcCCCCcc--cHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccC-CceEEEEecccCcccccccHH
Q psy15216 80 HFYKKRGKHIITVQTEHKS--VLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS-DTILVSVMLVNNEIGVIQPIL 156 (2602)
Q Consensus 80 ~~~~~~gd~Vlv~~~~~~s--~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~-~tklv~i~~~~npTG~~~~l~ 156 (2602)
++||+|+++.+.|++ +...+ +..|++++.++.++++.+|+++|++++++ ++++|++++++||||.+.|++
T Consensus 107 ----~~gd~Vl~~~~~~~~~~~~~~~---~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~l~ 179 (393)
T 1vjo_A 107 ----EPGDVVLIGVAGYFGNRLVDMA---GRYGADVRTISKPWGEVFSLEELRTALETHRPAILALVHAETSTGARQPLE 179 (393)
T ss_dssp ----CTTCEEEEEESSHHHHHHHHHH---HHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCT
T ss_pred ----CCCCEEEEEcCChhHHHHHHHH---HHcCCceEEEecCCCCCCCHHHHHHHHhhCCceEEEEeccCCCcceeccHH
Confidence 799999999999998 44433 44599999999988888999999999988 899999999999999999999
Q ss_pred HHHHHHHhcCCEEEEecccccccccccCCCCCccEEEeccccc-cCCCCcEEEEEecCCCCcccce---ecCCCc-----
Q psy15216 157 EIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKI-YGPKGIGALYIRRNPRTRIEAQ---IHGGGH----- 227 (2602)
Q Consensus 157 ~I~~la~~~g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K~-~Gp~G~G~l~~~~~~~~~l~~~---~~g~~~----- 227 (2602)
+|.++|++||+++|+|++|++|..++++..+++|++++|+||+ .+|.|+|++++++++++.+... ..++..
T Consensus 180 ~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~di~~~s~sK~l~~~~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (393)
T 1vjo_A 180 GVGELCREFGTLLLVDTVTSLGGVPIFLDAWGVDLAYSCSQKGLGCSPGASPFTMSSRAIEKLQRRRTKVANWYLDMNLL 259 (393)
T ss_dssp THHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEECCSSSTTCSCSSCEEEEECHHHHHHHHTCSSCCSCSTTCHHHH
T ss_pred HHHHHHHHcCCEEEEECCccccCcCCcccccCccEEEEcCcccccCCCceEEEEECHHHHHHHhccCCCCCceecCcHhh
Confidence 9999999999999999999988888888778899999999994 5566799999998766554211 111100
Q ss_pred -----cccccccCcchhHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEc-c
Q psy15216 228 -----EYGLRSGTLATHQIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN-F 300 (2602)
Q Consensus 228 -----~~~~~~gt~~~~~~~al~~al~~~-~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~-~ 300 (2602)
...+..|+++...++++.++++.. ..++++..+++.++++++.+.|.+ . ++++..+.....+.+..+.++ .
T Consensus 260 ~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~~~~~~ 337 (393)
T 1vjo_A 260 GKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLED-I-GLSLHVEKEYRLPTLTTVCIPDG 337 (393)
T ss_dssp HHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-T-TCCBSSCGGGBCSSEEEEECCTT
T ss_pred hhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHH-c-CCcccCCccccCCcEEEEEcCCC
Confidence 112233488888898888999864 346789999999999999999988 4 777765533223445556654 3
Q ss_pred cChhHHHHHh--C-CeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEec-CCCCCHHHHHHHHHHHHhh
Q psy15216 301 IEGESLLMAI--K-DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTI-GRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 301 ~~~~~~~~~L--~-gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~-~~~~t~edid~li~~L~~~ 369 (2602)
.+..++...| + ||.+++|..+.. .+++||++ ++.++++++++++++|++.
T Consensus 338 ~~~~~~~~~l~~~~gi~v~~g~~~~~-------------------~~~iRis~~~~~~~~~~i~~~~~~l~~~ 391 (393)
T 1vjo_A 338 VDGKAVARRLLNEHNIEVGGGLGELA-------------------GKVWRVGLMGFNSRKESVDQLIPALEQV 391 (393)
T ss_dssp CCHHHHHHHHHHHHCEECEECCGGGT-------------------TTEEEEECCGGGCSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhhCCEEEecCccccC-------------------CCEEEEeCCccCChHHHHHHHHHHHHHH
Confidence 4666777777 5 999998876533 27899995 4456777899999999853
|
| >3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.1e-27 Score=306.67 Aligned_cols=329 Identities=15% Similarity=0.189 Sum_probs=260.7
Q ss_pred cCCCCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCC--CcEEEeCCHHHHHHHHHHhhhh
Q psy15216 1399 KDATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADP--REIIWTSGATESNNLAIKGAAH 1476 (2602)
Q Consensus 1399 ~~~~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~--~~iv~t~gaT~al~~al~~l~~ 1476 (2602)
.....+.++.+++++.+.+.. + .++.......++++++++++|+++ +++++|+|+|+|++ ++.++.
T Consensus 7 ~~gp~~~~~~v~~a~~~~~~~-----~-----~~~~~~~~~~~~~~~la~~~~~~~~~~~v~~~~g~t~al~-~~~~~~- 74 (384)
T 3zrp_A 7 HVGPTTIKEDVLVAGLENNVG-----F-----TSKEFVEALAYSLKGLRYVMGASKNYQPLIIPGGGTSAME-SVTSLL- 74 (384)
T ss_dssp CSSCSCCCHHHHHHTTCCSCC-----T-----TSHHHHHHHHHHHHHHHHHHTCCTTSEEEEEESCHHHHHH-HGGGGC-
T ss_pred cCCCCCCCHHHHHHhhccccc-----c-----ccHHHHHHHHHHHHHHHHHhCCCCCCcEEEEcCCcHHHHH-HHHhhc-
Confidence 345567788888887665421 1 133456788999999999999987 78999999999999 888775
Q ss_pred hhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccC-CceEEEEeccccccccccChHHHH
Q psy15216 1477 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS-DTILVSVMLVNNEIGVIQPILEIG 1555 (2602)
Q Consensus 1477 ~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~-~t~lv~l~~~~n~tG~~~~l~~I~ 1555 (2602)
++||+|+++++.|++. .....+...|++++.++.++++.+|++++++++++ ++++|++++++||||.++|+++|.
T Consensus 75 ---~~gd~vi~~~~~~~~~-~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~ 150 (384)
T 3zrp_A 75 ---KPNDKILVVSNGVFGD-RWEQIFKRYPVNVKVLRPSPGDYVKPGEVEEEVRKSEYKLVALTHVETSTGVREPVKDVI 150 (384)
T ss_dssp ---CTTCEEEEECSSHHHH-HHHHHHTTSSCEEEEECCSTTCCCCHHHHHHHHHHSCEEEEEEESEETTTTEECCHHHHH
T ss_pred ---CCCCEEEEecCCcchH-HHHHHHHHcCCcEEEecCCCCCCCCHHHHHHHHHhCCCcEEEEeCCCCCCceECcHHHHH
Confidence 8999999999998773 22333456699999999998888999999999987 899999999999999999999999
Q ss_pred HHhhhcCCEEEEecccccCcccccCCCCCccEEEEcccc-ccCCCceEEEEEecCCCCcc-cccc-----------ccCC
Q psy15216 1556 ELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRI-EAQI-----------HGGG 1622 (2602)
Q Consensus 1556 ~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K-~~gp~G~G~l~~~~~~~~~l-~~~~-----------~g~~ 1622 (2602)
++|++||+++|+|++|+.+..+.++..+++|++++|+|| ++|+.|+|+++++++.++.+ .+.. ..+.
T Consensus 151 ~l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (384)
T 3zrp_A 151 NKIRKYVELIVVDGVSSVGAEEVKAEEWNVDVYLTASQKALGSAAGLGLLLLSPKALSILDSQNSIAGYYLDLRNWLPVM 230 (384)
T ss_dssp HHHGGGEEEEEEECTTTTTTSCCCTTTTTCSEEEEETTSTTCCCSSEEEEEECHHHHHHHHHCCCSCCSTTCHHHHHHHH
T ss_pred HHHHhcCCEEEEECcccccCccccccccCCCEEEecCcccccCCCceEEEEECHHHHHHhcCCCCCCcccccHHHHHHHH
Confidence 999999999999999999998888888889999999999 56788999999998776555 2100 0000
Q ss_pred cc----ccCCCCCcchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCC-CCCCCceEEEEEec
Q psy15216 1623 HE----YGLRSGTLATHQIVGMGEAFRLAR-IEMKEELKRILFLQKRLYNGLMESIEEIYINGDM-NNRIPHNLNISFNF 1696 (2602)
Q Consensus 1623 ~~----~~~~~gt~~~~~~~al~~aL~~~~-~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~-~~~~~~~~~~~~~~ 1696 (2602)
.. .....|+++...+.++.++++... .+++++.+++.++++++.+.|.+ . ++.+..+. ....+.+..+.++.
T Consensus 231 ~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~~~~~~ 308 (384)
T 3zrp_A 231 RGAEEGKAAYFATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIRAGLEA-L-GLEIVARRPESYSNTVTGVILKV 308 (384)
T ss_dssp HHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-T-TCCBSCSSGGGBCSSEEEEECSS
T ss_pred HhhcccCCCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH-C-CCeEccCcccccCccEEEEECCC
Confidence 00 223336889999999989998655 44889999999999999999988 4 77666543 22234455566665
Q ss_pred CCcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1697 IEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1697 ~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
.+..++...| +||.+++|..+.. +++|++++.++|.+|+++++++|++.
T Consensus 309 ~~~~~~~~~l~~~gi~v~~g~~~~~--------------------~~iRi~~~~~~~~e~i~~~~~~l~~~ 359 (384)
T 3zrp_A 309 ADPQKVLAGTVNEGVEFAPGVHPAF--------------------KYFRIGHMGWVTPNDAIIAISVIERT 359 (384)
T ss_dssp SCHHHHHHHHHTTTCCCEECCCTTC--------------------CEEEEECCSSCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCEEEecCCCCCc--------------------CEEEEeccccCCHHHHHHHHHHHHHH
Confidence 5666777766 7898887764311 68999999999999999999999974
|
| >2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-26 Score=300.67 Aligned_cols=334 Identities=15% Similarity=0.188 Sum_probs=259.3
Q ss_pred eeccC-CCCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCC-CCcEEEeCCHHHHHHHHHHh
Q psy15216 1396 IVFKD-ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYAD-PREIIWTSGATESNNLAIKG 1473 (2602)
Q Consensus 1396 v~L~~-~~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~-~~~iv~t~gaT~al~~al~~ 1473 (2602)
+|++. +..+.++.+.+++.+.+.. + ++.......+++++++++++|++ ++++++|+|+|+|+..++.+
T Consensus 21 ~~l~~~~~~~~~~~v~~a~~~~~~~-----~-----~~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~a~~~~~~~ 90 (386)
T 2dr1_A 21 YKLFTAGPVACFPEVLEIMKVQMFS-----H-----RSKEYRKVHMDTVERLREFLEVEKGEVLLVPSSGTGIMEASIRN 90 (386)
T ss_dssp SEECCSSSCCCCHHHHHHTTSCCCC-----T-----TSHHHHHHHHHHHHHHHHHHTCSSSEEEEESSCHHHHHHHHHHH
T ss_pred ceeecCCCcCCcHHHHHHHhccccc-----c-----cCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCChHHHHHHHHHH
Confidence 55653 4456778888777654421 1 12234678899999999999997 66799999999999999999
Q ss_pred hhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhc--cCCceEEEEeccccccccccCh
Q psy15216 1474 AAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKI--CSDTILVSVMLVNNEIGVIQPI 1551 (2602)
Q Consensus 1474 l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i--~~~t~lv~l~~~~n~tG~~~~l 1551 (2602)
+. ++||+|++++++|++.. ....+...|++++.++.++++.+|+++|++++ ++++++|++++++||||.+.|+
T Consensus 91 l~----~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l 165 (386)
T 2dr1_A 91 GV----SKGGKVLVTIIGAFGKR-YKEVVESNGRKAVVLEYEPGKAVKPEDLDDALRKNPDVEAVTITYNETSTGVLNPL 165 (386)
T ss_dssp HS----CTTCEEEEEESSHHHHH-HHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECCH
T ss_pred hh----cCCCeEEEEcCCchhHH-HHHHHHHhCCceEEEecCCCCCCCHHHHHHHHhcCCCCcEEEEEeecCCcchhCCH
Confidence 86 79999999999999831 22333445999999999888889999999999 6789999999999999999999
Q ss_pred HHHHHHhhhcCCEEEEecccccCcccccCCCCCccEEEEcccccc-CCCceEEEEEecCCCCcccccc-ccCC-------
Q psy15216 1552 LEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIY-GPKGIGALYIRRNPRTRIEAQI-HGGG------- 1622 (2602)
Q Consensus 1552 ~~I~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K~~-gp~G~G~l~~~~~~~~~l~~~~-~g~~------- 1622 (2602)
++|.++|++||+++|+|++|+.+..++++..+++|++++|+||++ +|.|+|++++++++++.+.+.. .++.
T Consensus 166 ~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~sK~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (386)
T 2dr1_A 166 PELAKVAKEHDKLVFVDAVSAMGGADIKFDKWGLDVVFSSSQKAFGVPPGLAIGAFSERFLEIAEKMPERGWYFDIPLYV 245 (386)
T ss_dssp HHHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCSEEEEETTSTTCCCSSCEEEEECHHHHHHHTTCTTCCSTTCHHHHH
T ss_pred HHHHHHHHHcCCeEEEEccccccCccccccccCCcEEEEeccccccCCCceEEEEECHHHHHHHhcCCCCceEEeHHHHH
Confidence 999999999999999999999988777777778999999999955 4668999999987655553211 0110
Q ss_pred --cc-ccCCCCCcchhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEe-c
Q psy15216 1623 --HE-YGLRSGTLATHQIVGMGEAFRLARI--EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN-F 1696 (2602)
Q Consensus 1623 --~~-~~~~~gt~~~~~~~al~~aL~~~~~--~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~-~ 1696 (2602)
.. .....++++...+.++.++|+.... ++++..+++.++++++.+.|.+ . ++.+..+.....+.+..+.++ +
T Consensus 246 ~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~g~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~~~~~~ 323 (386)
T 2dr1_A 246 KYLKEKESTPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYEKRAKMVREGVRE-I-GLDILAEPGHESPTITAVLTPPG 323 (386)
T ss_dssp HHHHHHSSCSSCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH-T-TCCBSSCTTCBCSSEEEEECCTT
T ss_pred HhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH-c-CCeeCcCccccCCceEEEEcCCC
Confidence 00 1345678888888888889986554 4788999999999999999988 4 776654432223444455555 3
Q ss_pred CCcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1697 IEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1697 ~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
.+..++...| +||.+++|..+.. .+++||+++.++|.+|+++++++|++.
T Consensus 324 ~~~~~~~~~l~~~gi~v~~~~~~~~-------------------~~~iRi~~~~~~~~~~i~~~~~~l~~~ 375 (386)
T 2dr1_A 324 IKGDEVYEAMRKRGFELAKGYGSVK-------------------EKTFRIGHMGYMKFEDIQEMLDNLREV 375 (386)
T ss_dssp CCHHHHHHHHHHTTEECEECCGGGT-------------------TTEEEEECCSSCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCeEEecCccccC-------------------CCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4556676666 7999988774322 278999999999999999999999974
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.8e-27 Score=306.69 Aligned_cols=335 Identities=13% Similarity=0.162 Sum_probs=255.1
Q ss_pred CCC-CCCCCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHH-HHHHhCCCCCcEEEeCCHHHHHHHHHHhc
Q psy15216 1 MDY-SATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNE-VAQLIYADPREIIWTSGATESNNLAIKGA 78 (2602)
Q Consensus 1 Ld~-a~~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~-lA~~~g~~~~~Iv~t~g~T~al~~~~~~l 78 (2602)
||+ ++.+++++.+.+++.+.+...........+..++...+..++++++ +++++|.+ +|++++|+|+|+++++.++
T Consensus 12 ld~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~~~~--~v~~~~g~t~a~~~~~~~~ 89 (371)
T 2e7j_A 12 IDPLQTGGKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCD--VARVTNGAREAKFAVMHSL 89 (371)
T ss_dssp CCHHHHTCCCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTTSS--EEEEESSHHHHHHHHHHHH
T ss_pred ecccccCCCCCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHcCCC--EEEEeCChHHHHHHHHHHH
Confidence 455 4467889999999998876432100000122333445578899999 99999987 9999999999999999998
Q ss_pred ccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEec--cCCCCccChHHHHhhcc-----CCceEEEEecccCcccc
Q psy15216 79 AHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLK--PKNNGLITLSQLEEKIC-----SDTILVSVMLVNNEIGV 151 (2602)
Q Consensus 79 ~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~--~~~~~~ld~e~l~~~i~-----~~tklv~i~~~~npTG~ 151 (2602)
. ++||+|++++++|+++...+.. .|++++.++ .++++.+|+++|+++++ +++++|++++++||||.
T Consensus 90 ~----~~gd~vl~~~~~~~~~~~~~~~---~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~~~~nptG~ 162 (371)
T 2e7j_A 90 A----KKDAWVVMDENCHYSSYVAAER---AGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGN 162 (371)
T ss_dssp C----CTTCEEEEETTCCHHHHHHHHH---TTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCC
T ss_pred h----CCCCEEEEccCcchHHHHHHHH---cCCeEEEeecccCCCCCcCHHHHHHHHHhhcccCCeEEEEEECCCCCCcc
Confidence 7 7999999999999998877544 499999999 77778899999999998 78999999999999999
Q ss_pred cccHHHHHHHHHhcCCEEEEecccccccccccCCCCCccEEEecccc-ccCCCCcEEEEEecCCCCc-ccceecCCCccc
Q psy15216 152 IQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTR-IEAQIHGGGHEY 229 (2602)
Q Consensus 152 ~~~l~~I~~la~~~g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K-~~Gp~G~G~l~~~~~~~~~-l~~~~~g~~~~~ 229 (2602)
++|+++|.++|++||+++|+|++|+.+..++++..+++|++++|+|| ++++.|+|++++++++++. +.+...++....
T Consensus 163 ~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~sK~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 242 (371)
T 2e7j_A 163 LPDVKKIAKVCSEYDVPLLVNGAYAIGRMPVSLKEIGADFIVGSGHKSMAASGPIGVMGMKEEWAEIVLRRSEKYKNKEV 242 (371)
T ss_dssp CCCHHHHHHHHHTTTCCEEEECTTTBTTBCCCHHHHTCSEEEEEHHHHSSCCSSCEEEEECTTTTTTTTCBCSSCTTSBG
T ss_pred cCCHHHHHHHHHHcCCeEEEECccccCCCCCChhhcCCCEEEecCCcCCCCCCCcEEEEEechhhhhhccccccCccccc
Confidence 99999999999999999999999999887766666678999999999 5566679999999998888 776554333333
Q ss_pred cccccCcchhHHHHHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcccChhHHH
Q psy15216 230 GLRSGTLATHQIVGMGEAFRLARIEMKEELKRI--LFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLL 307 (2602)
Q Consensus 230 ~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~--~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (2602)
.+..++++..+++++.+++++... +..++. +++++++.+.|.+ . ++.+..+.... ..++.+.++ +..++.
T Consensus 243 ~~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~~l~~~L~~-~-~~~~~~~~~~~-~~~~~~~~~--~~~~~~ 314 (371)
T 2e7j_A 243 ELLGCTARGATIITLMASFPHVRE---RIKRWDEEVEKARRFAAEMEK-L-GIKQLGDNPHN-HDLMFFHAE--VLYEIS 314 (371)
T ss_dssp GGTTCCCCSHHHHHHHHHHHHHHH---HGGGHHHHHHHHHHHHHHHHH-T-TCEEESSSSCC-SSEEEEECH--HHHHHH
T ss_pred ccccCCcCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-c-CcEEecCCCcc-CceEEEECC--CHHHHH
Confidence 344788888888888888875543 566777 8889999999987 4 88887654221 334455554 556677
Q ss_pred HHh--CCeEEcccccCCCCCCChHHHHHHc---CCCccCCCCeEE-EecCCC-CCHHHHHHHHHHHHhh
Q psy15216 308 MAI--KDIAVSSGSACTSASLEPSYVLRAL---GCNDELAHSSIR-FTIGRF-TTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 308 ~~L--~gI~v~~g~~~~~~~~~~~~~~~~~---g~~~~~~~~~iR-is~~~~-~t~edid~li~~L~~~ 369 (2602)
+.| +||.+++ ..+ .. |.. ++++| ++++.+ ++++|+++++++|++.
T Consensus 315 ~~l~~~gi~~~~-~~~------------~~~~~g~~----~~~iRii~~~~~~~~~~~i~~~~~~l~~~ 366 (371)
T 2e7j_A 315 KKAKGGRFFLYR-ELK------------SRKIHGIK----PGLTRYFKLSTYGLSDEEVDYVLNAFKEI 366 (371)
T ss_dssp HHSSSGGGHHHH-HHH------------HTTEECSC----TTCCSEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHCCEEEEe-ccc------------cccccCCC----CCceEEEEeeccCCCHHHHHHHHHHHHHH
Confidence 776 5676654 111 11 211 37899 999988 9999999999999864
|
| >3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=99.95 E-value=9.3e-27 Score=306.31 Aligned_cols=332 Identities=17% Similarity=0.226 Sum_probs=262.8
Q ss_pred ccCCCCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCc-EEEeCCHHHHHHHHHHhhhh
Q psy15216 1398 FKDATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE-IIWTSGATESNNLAIKGAAH 1476 (2602)
Q Consensus 1398 L~~~~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~-iv~t~gaT~al~~al~~l~~ 1476 (2602)
+.....+.++.+.+++.+.+. . + ..+.......++++++++++|+++++ +++++|+|+|++.++.++.
T Consensus 17 ~~pgp~~~~~~v~~a~~~~~~---~--~-----~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~sgt~al~~~~~~~~- 85 (411)
T 3nnk_A 17 MGPGPINADPRVLRAMSSQLI---G--Q-----YDPAMTHYMNEVMALYRGVFRTENRWTMLVDGTSRAGIEAILVSAI- 85 (411)
T ss_dssp ESSSCCCCCHHHHHHHTSCCC---C--T-----TCHHHHHHHHHHHHHHHHHHTCCCSEEEEEESCHHHHHHHHHHHHC-
T ss_pred ecCCCCCCCHHHHHHhhcccc---c--c-----ccHHHHHHHHHHHHHHHHHhCCCCCcEEEECCCcHHHHHHHHHHhc-
Confidence 344556777888877764321 0 1 12344567899999999999997666 7889999999999999986
Q ss_pred hhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccC-CceEEEEeccccccccccChHHHH
Q psy15216 1477 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS-DTILVSVMLVNNEIGVIQPILEIG 1555 (2602)
Q Consensus 1477 ~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~-~t~lv~l~~~~n~tG~~~~l~~I~ 1555 (2602)
++||+|+++.++|++.. ....+...|++++.++.+.++.+|+++|++++++ ++++|++++++||||.+.|+++|.
T Consensus 86 ---~~gd~Vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~ 161 (411)
T 3nnk_A 86 ---RPGDKVLVPVFGRFGHL-LCEIARRCRAEVHTIEVPWGEVFTPDQVEDAVKRIRPRLLLTVQGDTSTTMLQPLAELG 161 (411)
T ss_dssp ---CTTCEEEEEECSHHHHH-HHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHH
T ss_pred ---CCCCEEEEecCCchHHH-HHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHhhCCCeEEEEeCCCCCcceeccHHHHH
Confidence 89999999999998732 2334455599999999988888999999999986 999999999999999999999999
Q ss_pred HHhhhcCCEEEEecccccCcccccCCCCCccEEEEcccc-ccCCCceEEEEEecCCCCcccc------ccccCCc-----
Q psy15216 1556 ELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEA------QIHGGGH----- 1623 (2602)
Q Consensus 1556 ~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K-~~gp~G~G~l~~~~~~~~~l~~------~~~g~~~----- 1623 (2602)
++|++||+++|+|++|+.+..++++..+++|++++|+|| ++||.|+|++++++++++.+.+ .+.|+..
T Consensus 162 ~l~~~~~~~li~Dea~~~~~~~~~~~~~~~d~~~~s~~K~l~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~gg~~ 241 (411)
T 3nnk_A 162 EICRRYDALFYTDATASLGGNPLETDVWGLDAVSAGMQKCLGGPSGTSPITLSARMEEAIRRRKCVEEGIRTDAHRDGDE 241 (411)
T ss_dssp HHHHHHTCEEEEECTTTBTTBCCCTTTTTCSEEECCSTTTTCCCSSEEEEEECHHHHHHHHTTCCCCGGGCCTTCCCCSS
T ss_pred HHHHHcCCEEEEECCcccCCcccchhccCCcEEEecCccccCCCCceEEEEECHHHHHHHhhcccccccccccccccccC
Confidence 999999999999999999998888888899999999999 6899999999999876544332 2222211
Q ss_pred ------------------cccCCCCCcchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCC
Q psy15216 1624 ------------------EYGLRSGTLATHQIVGMGEAFRLARI-EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNN 1684 (2602)
Q Consensus 1624 ------------------~~~~~~gt~~~~~~~al~~aL~~~~~-~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~ 1684 (2602)
..++..++++...+.++.++++.... ++++..+++.++++++.+.|.+ .++.+..+...
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~--~g~~~~~~~~~ 319 (411)
T 3nnk_A 242 EMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQEGLDYGIARHKLHGDALVKGIQA--MGLETFGDLKH 319 (411)
T ss_dssp CCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH--TTCCBCSCGGG
T ss_pred CCCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH--cCCEeCCCccc
Confidence 23456788999999999899986554 4889999999999999999988 37776654433
Q ss_pred CCCceEEEEEe-cCCcHHHHHhc--C-CEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEec-CCCCCHHHHHHHH
Q psy15216 1685 RIPHNLNISFN-FIEGESLLMAI--K-DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTI-GRFTTEKEIDFTI 1759 (2602)
Q Consensus 1685 ~~~~~~~~~~~-~~~~~~~~~~L--~-gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~-~~~~t~edid~li 1759 (2602)
..+....+.++ +.+..++...| + ||.+++|..... .+++|+++ +..+|++|+++++
T Consensus 320 ~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~~~~-------------------~~~iRi~~~~~~~~~~~i~~~~ 380 (411)
T 3nnk_A 320 KMNNVLGVVIPQGINGDQARKLMLEDFGIEIGTSFGPLH-------------------GKVWRIGTMGYNARKDCVMTTL 380 (411)
T ss_dssp BCSSEEEEECCTTCCHHHHHHHHHHHHSEEEEECCGGGT-------------------TTEEEEECCGGGCSHHHHHHHH
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCeEEeCccCCCC-------------------CCEEEEeCccCcCCHHHHHHHH
Confidence 44566666665 45666777666 3 999987743221 27899998 6566899999999
Q ss_pred HHHHHh
Q psy15216 1760 KLLKMK 1765 (2602)
Q Consensus 1760 ~~L~~~ 1765 (2602)
++|++.
T Consensus 381 ~~l~~~ 386 (411)
T 3nnk_A 381 SALEAV 386 (411)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999974
|
| >2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=7.3e-27 Score=305.68 Aligned_cols=331 Identities=16% Similarity=0.224 Sum_probs=259.3
Q ss_pred CCCCCCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCC-cEEEeCCHHHHHHHHHHhcccc
Q psy15216 3 YSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPR-EIIWTSGATESNNLAIKGAAHF 81 (2602)
Q Consensus 3 ~a~~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~-~Iv~t~g~T~al~~~~~~l~~~ 81 (2602)
+.+..++++.+.+++.+.+.. + ++..+....+++|+++++++|.+++ +|++|+|+|+|+++++.++.
T Consensus 23 ~~~p~~~~~~v~~a~~~~~~~-----~-----~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~~-- 90 (396)
T 2ch1_A 23 GPGPSNCSKRVLTAMTNTVLS-----N-----FHAELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNLL-- 90 (396)
T ss_dssp SSSSCCCCHHHHHHTTSCCCC-----T-----TCHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHC--
T ss_pred cCCCCCCCHHHHHHhcccccc-----C-----CChhHHHHHHHHHHHHHHHhCCCCCcEEEECCcHHHHHHHHHHHhc--
Confidence 444456778888777654321 0 1223345688999999999999887 89999999999999999987
Q ss_pred cccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccC-CceEEEEecccCcccccccHHHHHH
Q psy15216 82 YKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS-DTILVSVMLVNNEIGVIQPILEIGE 160 (2602)
Q Consensus 82 ~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~-~tklv~i~~~~npTG~~~~l~~I~~ 160 (2602)
++||+|+++.++|+++. ....++..|++++.++.++++.+|+++|++++++ ++++|++++++||||.++|+++|.+
T Consensus 91 --~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~ 167 (396)
T 2ch1_A 91 --EEGDRVLIAVNGIWAER-AVEMSERYGADVRTIEGPPDRPFSLETLARAIELHQPKCLFLTHGDSSSGLLQPLEGVGQ 167 (396)
T ss_dssp --CTTCEEEEEESSHHHHH-HHHHHHHTTCEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHH
T ss_pred --CCCCeEEEEcCCcccHH-HHHHHHHcCCceEEecCCCCCCCCHHHHHHHHHhCCCCEEEEECCCCCCceecCHHHHHH
Confidence 79999999999999963 2234456699999999988888999999999987 8999999999999999999999999
Q ss_pred HHHhcCCEEEEecccccccccccCCCCCccEEEecccc-ccCCCCcEEEEEecCCCCcccce-------ecC-------C
Q psy15216 161 LCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQ-------IHG-------G 225 (2602)
Q Consensus 161 la~~~g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K-~~Gp~G~G~l~~~~~~~~~l~~~-------~~g-------~ 225 (2602)
+|++||+++|+|++|++|..++++..+++|++++|+|| ++++.|+|++++++++++.+.+. +.+ +
T Consensus 168 l~~~~~~~li~Dea~~~g~~~~~~~~~~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (396)
T 2ch1_A 168 ICHQHDCLLIVDAVASLCGVPFYMDKWEIDAVYTGAQKVLGAPPGITPISISPKALDVIRNRRTKSKVFYWDLLLLGNYW 247 (396)
T ss_dssp HHHHTTCEEEEECTTTBTTBCCCTTTTTCCEEECCCC-CCCCCSSCEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHT
T ss_pred HHHHcCCEEEEEccccccCCccchhhcCcCEEEEcCCccccCCCCeEEEEECHHHHHhhhhccCcccceEechHHHHHhh
Confidence 99999999999999999988888888889999999999 67788999999988765544321 111 1
Q ss_pred C--ccccccccCcchhHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCC-CCCCceEEEEEc-c
Q psy15216 226 G--HEYGLRSGTLATHQIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMN-NRIPHNLNISFN-F 300 (2602)
Q Consensus 226 ~--~~~~~~~gt~~~~~~~al~~al~~~-~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~-~~~~~~~~~~~~-~ 300 (2602)
. ....+..++++...+.++.++++.. ..++++..++++++++++.+.|.+ + |++++.+.. ...+.++.+.++ +
T Consensus 248 ~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~~~~~~~ 325 (396)
T 2ch1_A 248 GCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGK-M-GLDIFVKDPRHRLPTVTGIMIPKG 325 (396)
T ss_dssp TCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-H-TCCBSSCSGGGBCTTEEEEECCTT
T ss_pred hhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-C-CCeeccCCccccCCceEEEEcCCC
Confidence 0 1123456788888888888888854 356888999999999999999988 4 777765543 223445556665 4
Q ss_pred cChhHHHHHh--C-CeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEec-CCCCCHHHHHHHHHHHHhh
Q psy15216 301 IEGESLLMAI--K-DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTI-GRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 301 ~~~~~~~~~L--~-gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~-~~~~t~edid~li~~L~~~ 369 (2602)
.+..++.+.| + ||.+++|..+.. .+++||++ ++.++++|+++++++|++.
T Consensus 326 ~~~~~~~~~L~~~~gi~v~~g~~~~~-------------------~~~iRi~~~~~~~~~e~i~~~~~~l~~~ 379 (396)
T 2ch1_A 326 VDWWKVSQYAMNNFSLEVQGGLGPTF-------------------GKAWRVGIMGECSTVQKIQFYLYGFKES 379 (396)
T ss_dssp CCHHHHHHHHHHHHCBCCBCCCGGGT-------------------TTEEEEECCGGGCSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCEEEecCccccC-------------------CCEEEEECCCCcCCHHHHHHHHHHHHHH
Confidence 5667777776 3 999987764322 37899999 4566899999999999964
|
| >1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.95 E-value=3.2e-26 Score=301.66 Aligned_cols=334 Identities=15% Similarity=0.163 Sum_probs=260.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhccc
Q psy15216 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAH 80 (2602)
Q Consensus 1 Ld~a~~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~ 80 (2602)
||+++.+++|+.+.+++.+.+...++++... ..+........+++++++++++|+++++|++|+|+++++.+++.++..
T Consensus 32 ld~~~~~~~~~~v~~a~~~~l~~~~~~~~~~-~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~al~~al~~~~~ 110 (416)
T 1qz9_A 32 LDGNSLGARPVAALARAQAVIAEEWGNGLIR-SWNSAGWRDLSERLGNRLATLIGARDGEVVVTDTTSINLFKVLSAALR 110 (416)
T ss_dssp CCTTTSCCCBTTHHHHHHHHHHTCCCCCGGG-HHHHTSGGGHHHHHHHHHHTTTTCCTTSEEECSCHHHHHHHHHHHHHH
T ss_pred ecCCCcCCCcHHHHHHHHHHHHHHHhccCcc-ccchhhHHHHHHHHHHHHHHHcCCCcccEEEeCChhHHHHHHHHhhcc
Confidence 7888888999999999999987644444220 011111235678999999999999888999999999999988887631
Q ss_pred ccc----cCCCE-EEEcCCCCcccHHHHHHH-HhC--CcEEEEeccCCCCccChHHHHhhccCCceEEEEecccCccccc
Q psy15216 81 FYK----KRGKH-IITVQTEHKSVLDSIRKL-END--GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVI 152 (2602)
Q Consensus 81 ~~~----~~gd~-Vlv~~~~~~s~~~~~~~~-~~~--G~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~ 152 (2602)
+ ++||+ |+++.++|+++...+..+ +.. |++++.++. +++|++++++++++|++++++||||.+
T Consensus 111 --~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~-------~~~l~~~i~~~~~~v~~~~~~nptG~~ 181 (416)
T 1qz9_A 111 --VQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLRLVDS-------PEELPQAIDQDTAVVMLTHVNYKTGYM 181 (416)
T ss_dssp --HHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEEEESS-------GGGHHHHCSTTEEEEEEESBCTTTCBB
T ss_pred --cccccCCCCcEEEEcCCCCCchHHHHHHHHHHhcCCceEEEeCc-------HHHHHHHhCCCceEEEEeccccCcccc
Confidence 2 58885 677778999887776554 333 899999885 889999999999999999999999999
Q ss_pred ccHHHHHHHHHhcCCEEEEecccccccccccCCCCCccEEEeccccc-cCCCCc-EEEEEecCCCCcccceecCCCc---
Q psy15216 153 QPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKI-YGPKGI-GALYIRRNPRTRIEAQIHGGGH--- 227 (2602)
Q Consensus 153 ~~l~~I~~la~~~g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K~-~Gp~G~-G~l~~~~~~~~~l~~~~~g~~~--- 227 (2602)
.|+++|.++|++||+++|+|++|+.|..++++..+++|++++|+||+ ++++|+ |++++++++++.+.+...+|..
T Consensus 182 ~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~~K~l~~g~~~~g~l~~~~~~~~~l~~~~~g~~g~~~ 261 (416)
T 1qz9_A 182 HDMQALTALSHECGALAIWDLAHSAGAVPVDLHQAGADYAIGCTYKYLNGGPGSQAFVWVSPQLCDLVPQPLSGWFGHSR 261 (416)
T ss_dssp CCHHHHHHHHHHHTCEEEEECTTTTTTSCCCHHHHTCSEEEECSSSTTCCCTTCCCEEEECTTTTTTSCCSCCCGGGBCT
T ss_pred cCHHHHHHHHHHcCCEEEEEccccccCcCCChhhcCCCEEEecCcccCCCCCCCeEEEEECHHHHhccCCCccccCcccc
Confidence 99999999999999999999999998877766666789999999995 466677 9999999988888775544311
Q ss_pred -------------cccccccCcchhHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHhhccC--ceEEeCCCCC-CC
Q psy15216 228 -------------EYGLRSGTLATHQIVGMGEAFRLAR-IEMKEELKRILFLQKRLYNGLMESIE--EIYINGDMNN-RI 290 (2602)
Q Consensus 228 -------------~~~~~~gt~~~~~~~al~~al~~~~-~~~~~~~~~~~~l~~~l~~~L~~~~~--g~~l~~~~~~-~~ 290 (2602)
..++..++++..+++++.++++... .++++..+++.++++++.+.|.+..+ ++.+..+... ..
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~~~~ 341 (416)
T 1qz9_A 262 QFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQRCAAHELTLVTPREHAKR 341 (416)
T ss_dssp TSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHTTSCCEECSCSSGGGB
T ss_pred ccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhccCCCeEEeCCCCHHHc
Confidence 1245677899999999989998654 56888999999999999999987336 8888765321 11
Q ss_pred CceEEEEEcccChhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecC-CCCCHHHHHHHHHHHH
Q psy15216 291 PHNLNISFNFIEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIG-RFTTEKEIDFTIKLLK 367 (2602)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~-~~~t~edid~li~~L~ 367 (2602)
..++.+.++ +..++.+.| +||.++.. ..+++||+++ .+++++|+++++++|+
T Consensus 342 ~~~~~~~~~--~~~~l~~~l~~~gi~~~~~-----------------------~~~~lRis~~~~~~t~~~i~~~~~~l~ 396 (416)
T 1qz9_A 342 GSHVSFEHP--EGYAVIQALIDRGVIGDYR-----------------------EPRIMRFGFTPLYTTFTEVWDAVQILG 396 (416)
T ss_dssp CSEEEEECT--THHHHHHHHHTTTEECEEE-----------------------TTTEEEEECCTTTCCHHHHHHHHHHHH
T ss_pred CCEEEEecC--CHHHHHHHHHhCCcEeccC-----------------------CCCeEEEeCcccCCCHHHHHHHHHHHH
Confidence 233344433 466677666 68776321 1378999998 5899999999999999
Q ss_pred hh
Q psy15216 368 MK 369 (2602)
Q Consensus 368 ~~ 369 (2602)
+.
T Consensus 397 ~~ 398 (416)
T 1qz9_A 397 EI 398 (416)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-26 Score=298.29 Aligned_cols=330 Identities=11% Similarity=0.091 Sum_probs=246.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhhcCCCCCC---CcchhhhHHHHHHHHHHHHHHHhCCCCC-c-EEEeCCHHHHHHHHH
Q psy15216 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASR---NHIYGWTAEKAIEKARNEVAQLIYADPR-E-IIWTSGATESNNLAI 75 (2602)
Q Consensus 1 Ld~a~~~~~p~~v~~a~~~~l~~~~~~p~~~---~~~~~~~~~~~~~~~r~~lA~~~g~~~~-~-Iv~t~g~T~al~~~~ 75 (2602)
||+++.+++|+.+++++.+++... .+++.+ ....+.......+++++++++++|++++ + +++|+|+|+|+++++
T Consensus 7 l~~~~~~~~~~~v~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~i~~t~g~t~a~~~~~ 85 (362)
T 2c0r_A 7 NFNAGPAALPLEVLERAQAEFVDY-QHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQFAMIP 85 (362)
T ss_dssp ECCSSSCCCCHHHHHHHHHTSSSS-TTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHHHHH
T ss_pred eccCCCCCCCHHHHHHHHHHHhhh-hhcCccccccCCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCchHHHHHHH
Confidence 578888999999999999988643 222111 1112344556789999999999999764 6 578899999999999
Q ss_pred HhcccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCC--CC--ccChHHHHhhccCCceEEEEecccCcccc
Q psy15216 76 KGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NG--LITLSQLEEKICSDTILVSVMLVNNEIGV 151 (2602)
Q Consensus 76 ~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~--~ld~e~l~~~i~~~tklv~i~~~~npTG~ 151 (2602)
.++. ++||+|+++.+.|.+. .+...++..| +++.++++. ++ .+|+++++ ++++|++|++++++||||.
T Consensus 86 ~~l~----~~gd~vl~~~~~~~~~-~~~~~~~~~g-~~~~v~~~~~~~~~~~~~~~~~~--i~~~t~~v~~~~~~n~tG~ 157 (362)
T 2c0r_A 86 MNFL----KEGQTANYVMTGSWAS-KALKEAKLIG-DTHVAASSEASNYMTLPKLQEIQ--LQDNAAYLHLTSNETIEGA 157 (362)
T ss_dssp HHHC----CTTCEEEEEECSHHHH-HHHHHHHHHS-CEEEEEECGGGTTCSCCCGGGCC--CCTTEEEEEEESEETTTTE
T ss_pred HhcC----CCCCeEEEEecCcHhH-HHHHHHHHhC-CeEEEecccccccccCCCHHHcc--cCCCcCEEEEeCCcCccce
Confidence 9987 7999999886655442 1223444458 899998762 22 35666664 7889999999999999999
Q ss_pred c-ccHHHHHHHHHhcCCEEEEecccccccccccCCCCCccEEEeccccccCCCCcEEEEEecCCCCcccceecC---CC-
Q psy15216 152 I-QPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHG---GG- 226 (2602)
Q Consensus 152 ~-~~l~~I~~la~~~g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K~~Gp~G~G~l~~~~~~~~~l~~~~~g---~~- 226 (2602)
+ .|+++| +|+++++|++|+.+..++++.++ |++++|+||++||+|+||+++++++++.+.+.... +.
T Consensus 158 ~~~~l~~i------~~~~vivD~a~~~~~~~~~~~~~--d~~~~s~~K~~g~~G~G~l~~~~~~~~~l~~~~~~~~~~~~ 229 (362)
T 2c0r_A 158 QFKAFPDT------GSVPLIGDMSSDILSRPFDLNQF--GLVYAGAQKNLGPSGVTVVIVREDLVAESPKHLPTMLRYDT 229 (362)
T ss_dssp ECSSCCCC------TTSCEEEECTTTTTSSCCCGGGC--SEEEEETTTTTCCSSCEEEEEEGGGSSSCCTTSCGGGCHHH
T ss_pred eccccccc------CCCEEEEEChhhccCCccchhHC--cEEEEeccccccCcCcEEEEEcHHHHhhccccCchHHhHHH
Confidence 6 677776 89999999999999888777654 89999999999999999999999988777542110 00
Q ss_pred -ccccccccCcchhHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHhhccCce-EEeCCCCCCCCceEEEEEcc-c
Q psy15216 227 -HEYGLRSGTLATHQIVGMGEAFRLARI--EMKEELKRILFLQKRLYNGLMESIEEI-YINGDMNNRIPHNLNISFNF-I 301 (2602)
Q Consensus 227 -~~~~~~~gt~~~~~~~al~~al~~~~~--~~~~~~~~~~~l~~~l~~~L~~~~~g~-~l~~~~~~~~~~~~~~~~~~-~ 301 (2602)
.......+|++...++++.+|++.... +++++.++++++++++++.|.+ ++++ .+..++..+.+..+.+.++. .
T Consensus 230 ~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (362)
T 2c0r_A 230 YVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQ-SGGFYRGCVDVDSRSDMNITFRLASEE 308 (362)
T ss_dssp HHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHT-STTSSEESSCGGGBCSSEEEEECSCHH
T ss_pred HhhccCcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH-cCCccccCCChHHcCCcEEEEEcCCcc
Confidence 011234578999999999999996554 6899999999999999999987 4435 76543322233444444442 3
Q ss_pred ChhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 302 EGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 302 ~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
+..++...| +||.+.+|..+ .+++|||++.+++++|+++++++|++.
T Consensus 309 ~~~~~~~~L~~~gi~~~~g~~~---------------------~~~iRis~~~~~~~e~i~~l~~~l~~~ 357 (362)
T 2c0r_A 309 LEKEFVKASEQEGFVGLKGHRS---------------------VGGLRASIYNAVPYESCEALVQFMEHF 357 (362)
T ss_dssp HHHHHHHHHHHTTEESCBCCTT---------------------TCSEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCCCeeccCCCC---------------------CCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 456677777 78977665432 156999999999999999999999863
|
| >2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=9.4e-27 Score=299.44 Aligned_cols=329 Identities=15% Similarity=0.157 Sum_probs=259.5
Q ss_pred ccCCCCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCC--CCcEEEeCCHHHHHHHHHHhhh
Q psy15216 1398 FKDATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYAD--PREIIWTSGATESNNLAIKGAA 1475 (2602)
Q Consensus 1398 L~~~~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~--~~~iv~t~gaT~al~~al~~l~ 1475 (2602)
+..+..+.++.+++++.+.+.. +. ++.......++|+++++++|++ ++++++|+|+|+|++.++.++.
T Consensus 4 ~~~gp~~~~~~v~~a~~~~~~~-----~~-----~~~~~~~~~~l~~~la~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~ 73 (353)
T 2yrr_A 4 LTPGPTPIPERVQKALLRPMRG-----HL-----DPEVLRVNRAIQERLAALFDPGEGALVAALAGSGSLGMEAGLANLD 73 (353)
T ss_dssp CSSSSCCCCHHHHGGGGSCCCC-----TT-----CHHHHHHHHHHHHHHHHHHCCCTTCEEEEESSCHHHHHHHHHHTCS
T ss_pred CCCCCCCCCHHHHHHHhccccc-----cc-----CHHHHHHHHHHHHHHHHHhCCCCCCceEEEcCCcHHHHHHHHHHhc
Confidence 3455678888888888765532 11 2344567899999999999985 6789999999999999999886
Q ss_pred hhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccC-CceEEEEeccccccccccChHHH
Q psy15216 1476 HFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS-DTILVSVMLVNNEIGVIQPILEI 1554 (2602)
Q Consensus 1476 ~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~-~t~lv~l~~~~n~tG~~~~l~~I 1554 (2602)
+ |+|++++++|+++ .....+...|++++.++.++++.+|+++|++++++ ++++|++++++||||.++|+++|
T Consensus 74 ----~--d~vl~~~~~~~~~-~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i 146 (353)
T 2yrr_A 74 ----R--GPVLVLVNGAFSQ-RVAEMAALHGLDPEVLDFPPGEPVDPEAVARALKRRRYRMVALVHGETSTGVLNPAEAI 146 (353)
T ss_dssp ----C--CCEEEEECSHHHH-HHHHHHHHTTCCEEEEECCTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCHHHH
T ss_pred ----C--CcEEEEcCCCchH-HHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHHhCCCCEEEEEccCCCcceecCHHHH
Confidence 3 8999999999987 44444566799999999988888999999999988 89999999999999999999999
Q ss_pred HHHhhhcCCEEEEecccccCcccccCCCCCccEEEEcccc-ccCCCceEEEEEecCCCCcccc---cccc-----CCccc
Q psy15216 1555 GELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEA---QIHG-----GGHEY 1625 (2602)
Q Consensus 1555 ~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K-~~gp~G~G~l~~~~~~~~~l~~---~~~g-----~~~~~ 1625 (2602)
.++|++||+++|+|++|+.+..++++..+++|++++|+|| ++||+|+|+++++++.++.+.. .+.. +....
T Consensus 147 ~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 226 (353)
T 2yrr_A 147 GALAKEAGALFFLDAVTTLGMLPFSMRAMGVDYAFTGSQKCLSAPPGLAPIAASLEARKAFTGKRGWYLDLARVAEHWER 226 (353)
T ss_dssp HHHHHHHTCEEEEECTTTTTTSCCCHHHHTCSEEECCTTSTTCCCSSCEEEEECHHHHHHCCCCSCSTTCHHHHHHHHTT
T ss_pred HHHHHHcCCeEEEEcCcccccccccccccCceEEEecCcccccCCCceEEEEECHHHHHHhccCCCccccHHHHhhhhhc
Confidence 9999999999999999998877666655678999999999 7788899999999876655541 1000 00112
Q ss_pred cCCCCCcchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEe-cCCcHHHH
Q psy15216 1626 GLRSGTLATHQIVGMGEAFRLARI-EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN-FIEGESLL 1703 (2602)
Q Consensus 1626 ~~~~gt~~~~~~~al~~aL~~~~~-~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~-~~~~~~~~ 1703 (2602)
....++++...+.++.++++.... ++++.++++.++++++.+.|.+ . ++.+..++ ...+.+..+.++ +.+..++.
T Consensus 227 ~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 303 (353)
T 2yrr_A 227 GGYHHTTPVLLHYALLEALDLVLEEGVAARERRAREVYAWVLEELKA-R-GFRPYPKA-SPLPTVLVVRPPEGVDADRLV 303 (353)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-T-TCEESCSS-SBCTTEEEEECCTTCCHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-C-CCccccCc-cCCCeEEEEECCCCCCHHHHH
Confidence 345678888888888888886544 4888999999999999999988 5 88776532 113344445554 34566777
Q ss_pred Hhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHH-HHHHHHHHh
Q psy15216 1704 MAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEID-FTIKLLKMK 1765 (2602)
Q Consensus 1704 ~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid-~li~~L~~~ 1765 (2602)
..| +||.+++|..|... +++|++++.+++.+|++ +++++|++.
T Consensus 304 ~~l~~~gi~v~~g~~~~~~-------------------~~iRi~~~~~~~~~~~~~~~~~~l~~~ 349 (353)
T 2yrr_A 304 RALYAEGVAVAGGIGPTRG-------------------QVLRLGLMGEGARREAYQAFLKALDRA 349 (353)
T ss_dssp HHHHHTTEECEECCGGGTT-------------------TCEEEECSGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHCCEEEeCCccccCC-------------------CeEEEecCccCCHHHHHHHHHHHHHHH
Confidence 666 79999988755322 78999998888999999 999999873
|
| >3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.5e-26 Score=300.25 Aligned_cols=332 Identities=16% Similarity=0.217 Sum_probs=261.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCC-cEEEeCCHHHHHHHHHHhccc
Q psy15216 2 DYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPR-EIIWTSGATESNNLAIKGAAH 80 (2602)
Q Consensus 2 d~a~~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~-~Iv~t~g~T~al~~~~~~l~~ 80 (2602)
.+.+..++++.+.+++.+.+.. + ..........++++++++++|.+.. +|++++|+++|+..++.++.
T Consensus 27 ~~p~p~~~~~~v~~a~~~~~~~-----~-----~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~~al~~~~~~~~- 95 (393)
T 3kgw_A 27 LGPGPSNLAPRVLAAGSLRMIG-----H-----MQKEMLQIMEEIKQGIQYVFQTRNPLTLVVSGSGHCAMETALFNLL- 95 (393)
T ss_dssp CSSSCCCCCHHHHHHTTCCCCC-----T-----TSHHHHHHHHHHHHHHHHHHTCCCSEEEEESCCTTTHHHHHHHHHC-
T ss_pred ccCCCCCCCHHHHHHhcccccC-----c-----ccHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCcHHHHHHHHHhcC-
Confidence 3445557788888777653211 1 1223346788999999999998655 59999999999999999987
Q ss_pred ccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccC-CceEEEEecccCcccccccHHHHH
Q psy15216 81 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS-DTILVSVMLVNNEIGVIQPILEIG 159 (2602)
Q Consensus 81 ~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~-~tklv~i~~~~npTG~~~~l~~I~ 159 (2602)
++||+|+++.+.|.+. .....++..|++++.++.++++.+|+++|++++++ ++++|++++++||||.++|+++|.
T Consensus 96 ---~~gd~vl~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~ 171 (393)
T 3kgw_A 96 ---EPGDSFLTGTNGIWGM-RAAEIADRIGARVHQMIKKPGEHYTLQEVEEGLAQHKPVLLFLVHGESSTGVVQPLDGFG 171 (393)
T ss_dssp ---CTTCEEEEEESSHHHH-HHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHH
T ss_pred ---CCCCEEEEEeCCchhH-HHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHhhCCCcEEEEeccCCcchhhccHHHHH
Confidence 8999999998777543 23344456799999999988888999999999987 899999999999999999999999
Q ss_pred HHHHhcCCEEEEecccccccccccCCCCCccEEEecccc-ccCCCCcEEEEEecCCCCcccceec---------------
Q psy15216 160 ELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIH--------------- 223 (2602)
Q Consensus 160 ~la~~~g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K-~~Gp~G~G~l~~~~~~~~~l~~~~~--------------- 223 (2602)
++|++||+++|+|++|+.|..++++..+++|++++|+|| ++|+.|+|++++++++++.+.+...
T Consensus 172 ~l~~~~~~~li~De~~~~g~~~~~~~~~~~d~~~~s~sK~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (393)
T 3kgw_A 172 ELCHRYQCLLLVDSVASLGGVPIYMDQQGIDIMYSSSQKVLNAPPGISLISFNDKAKYKVYSRKTKPVSFYTDITYLAKL 251 (393)
T ss_dssp HHHHHTTCEEEEECTTTTTTSCCCTTTTTCCEEEEESSSTTCCCSSCEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHH
T ss_pred HHHHHcCCEEEEECCccccCcccchhhcCCCEEEecCcccccCCCceeEEEECHHHHHHHhccCCCCCceeecHHHHHHh
Confidence 999999999999999999888888888889999999999 6689999999999887666543221
Q ss_pred -CCCccccccccCcchhHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCC-CCCCCceEEEEEc-
Q psy15216 224 -GGGHEYGLRSGTLATHQIVGMGEAFRLAR-IEMKEELKRILFLQKRLYNGLMESIEEIYINGDM-NNRIPHNLNISFN- 299 (2602)
Q Consensus 224 -g~~~~~~~~~gt~~~~~~~al~~al~~~~-~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~-~~~~~~~~~~~~~- 299 (2602)
++....++..++++..+++++.++++... .++++..+++.++++++.+.|.+ + ++++..+. ....+.+..+.++
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~~~~~~ 329 (393)
T 3kgw_A 252 WGCEGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWRRHREATAHLHKHLQE-M-GLKFFVKDPEIRLPTITTVTVPA 329 (393)
T ss_dssp TTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-T-TCCBSSSSGGGBCSSEEEEECCT
T ss_pred hhhccccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-c-CCeeccCChhhcCCeEEEEeCCC
Confidence 11222345678899999999988988544 45899999999999999999988 4 77765332 2233455556665
Q ss_pred ccChhHHHHHh--C-CeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEec-CCCCCHHHHHHHHHHHHhh
Q psy15216 300 FIEGESLLMAI--K-DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTI-GRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 300 ~~~~~~~~~~L--~-gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~-~~~~t~edid~li~~L~~~ 369 (2602)
..+..++...| + ||.+++|..+.. ++++|+++ +..++++|+++++++|++.
T Consensus 330 ~~~~~~~~~~l~~~~gi~v~~g~~~~~-------------------~~~iRi~~~~~~~~~~~i~~~~~~l~~~ 384 (393)
T 3kgw_A 330 GYNWRDIVSYVLDHFSIEISGGLGPTE-------------------ERVLRIGLLGYNATTENVDRVAEALREA 384 (393)
T ss_dssp TBCHHHHHHHHHHHHCEECBCCCGGGT-------------------TTEEEEECCGGGCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCEEEeCCcccCC-------------------CCEEEEEecccCCCHHHHHHHHHHHHHH
Confidence 35667777776 5 999998765432 37999998 5556999999999999964
|
| >2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.4e-26 Score=300.69 Aligned_cols=330 Identities=16% Similarity=0.203 Sum_probs=256.2
Q ss_pred CCCCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCC-cEEEeCCHHHHHHHHHHhhhhhh
Q psy15216 1400 DATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPR-EIIWTSGATESNNLAIKGAAHFY 1478 (2602)
Q Consensus 1400 ~~~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~-~iv~t~gaT~al~~al~~l~~~~ 1478 (2602)
.+..+.++.+.+++.+.+.. + +.........++|+++++++|.+++ ++++|+|+|+|+..++.++.
T Consensus 24 ~~p~~~~~~v~~a~~~~~~~-----~-----~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~~--- 90 (396)
T 2ch1_A 24 PGPSNCSKRVLTAMTNTVLS-----N-----FHAELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNLL--- 90 (396)
T ss_dssp SSSCCCCHHHHHHTTSCCCC-----T-----TCHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHC---
T ss_pred CCCCCCCHHHHHHhcccccc-----C-----CChhHHHHHHHHHHHHHHHhCCCCCcEEEECCcHHHHHHHHHHHhc---
Confidence 34456677777776554321 1 1233445688999999999999887 89999999999999999986
Q ss_pred ccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccC-CceEEEEeccccccccccChHHHHHH
Q psy15216 1479 KKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS-DTILVSVMLVNNEIGVIQPILEIGEL 1557 (2602)
Q Consensus 1479 ~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~-~t~lv~l~~~~n~tG~~~~l~~I~~i 1557 (2602)
++||+|++++++|+++. ....+...|++++.++.++++.+|+++|++++++ ++++|++++++||||.++|+++|.++
T Consensus 91 -~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l 168 (396)
T 2ch1_A 91 -EEGDRVLIAVNGIWAER-AVEMSERYGADVRTIEGPPDRPFSLETLARAIELHQPKCLFLTHGDSSSGLLQPLEGVGQI 168 (396)
T ss_dssp -CTTCEEEEEESSHHHHH-HHHHHHHTTCEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHH
T ss_pred -CCCCeEEEEcCCcccHH-HHHHHHHcCCceEEecCCCCCCCCHHHHHHHHHhCCCCEEEEECCCCCCceecCHHHHHHH
Confidence 79999999999999974 2234455699999999988888999999999988 89999999999999999999999999
Q ss_pred hhhcCCEEEEecccccCcccccCCCCCccEEEEcccc-ccCCCceEEEEEecCCCCcccc-------cccc-------C-
Q psy15216 1558 CRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEA-------QIHG-------G- 1621 (2602)
Q Consensus 1558 a~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K-~~gp~G~G~l~~~~~~~~~l~~-------~~~g-------~- 1621 (2602)
|++||+++|+|++|++|..++++..+++|++++|+|| ++++.|+|+++++++.++.+.. .+.+ +
T Consensus 169 ~~~~~~~li~Dea~~~g~~~~~~~~~~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (396)
T 2ch1_A 169 CHQHDCLLIVDAVASLCGVPFYMDKWEIDAVYTGAQKVLGAPPGITPISISPKALDVIRNRRTKSKVFYWDLLLLGNYWG 248 (396)
T ss_dssp HHHTTCEEEEECTTTBTTBCCCTTTTTCCEEECCCC-CCCCCSSCEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTT
T ss_pred HHHcCCEEEEEccccccCCccchhhcCcCEEEEcCCccccCCCCeEEEEECHHHHHhhhhccCcccceEechHHHHHhhh
Confidence 9999999999999999988888888889999999999 6778899999998765544321 1111 1
Q ss_pred -CccccCCCCCcchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCC-CCCCceEEEEEe-cC
Q psy15216 1622 -GHEYGLRSGTLATHQIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMN-NRIPHNLNISFN-FI 1697 (2602)
Q Consensus 1622 -~~~~~~~~gt~~~~~~~al~~aL~~~-~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~-~~~~~~~~~~~~-~~ 1697 (2602)
.....+..++++...+.++.++++.. ..++++..+++.++++++.+.|.+ . ++.+..+.. ...+.+..+.++ +.
T Consensus 249 ~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~~~~~~~~ 326 (396)
T 2ch1_A 249 CYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGK-M-GLDIFVKDPRHRLPTVTGIMIPKGV 326 (396)
T ss_dssp CSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-H-TCCBSSCSGGGBCTTEEEEECCTTC
T ss_pred hhcccCCCCCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-C-CCeeccCCccccCCceEEEEcCCCC
Confidence 11124556788888888888888854 356888999999999999999988 3 776664433 123445555554 34
Q ss_pred CcHHHHHhc--C-CEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecC-CCCCHHHHHHHHHHHHHh
Q psy15216 1698 EGESLLMAI--K-DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIG-RFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1698 ~~~~~~~~L--~-gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~-~~~t~edid~li~~L~~~ 1765 (2602)
+..++...| + ||.+++|..+.. .+++||+++ ..++++|+++++++|++.
T Consensus 327 ~~~~~~~~L~~~~gi~v~~g~~~~~-------------------~~~iRi~~~~~~~~~e~i~~~~~~l~~~ 379 (396)
T 2ch1_A 327 DWWKVSQYAMNNFSLEVQGGLGPTF-------------------GKAWRVGIMGECSTVQKIQFYLYGFKES 379 (396)
T ss_dssp CHHHHHHHHHHHHCBCCBCCCGGGT-------------------TTEEEEECCGGGCSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCEEEecCccccC-------------------CCEEEEECCCCcCCHHHHHHHHHHHHHH
Confidence 566777666 3 999887764322 278999994 456899999999999974
|
| >3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.2e-26 Score=293.97 Aligned_cols=328 Identities=13% Similarity=0.112 Sum_probs=254.6
Q ss_pred CCCCCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCC-c-EEEeCCHHHHHHHHHHhcccc
Q psy15216 4 SATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPR-E-IIWTSGATESNNLAIKGAAHF 81 (2602)
Q Consensus 4 a~~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~-~-Iv~t~g~T~al~~~~~~l~~~ 81 (2602)
.+..++|+.+++++.+.+.. +. +....+..+++++++++++|++++ + +++++|+|+|+++++.++.
T Consensus 25 pgp~~~~~~v~~a~~~~~~~-----~~-----~~~~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~~~~-- 92 (376)
T 3f0h_A 25 VGPVMSSEEVRAIGAEQVPY-----FR-----TTEFSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMNCF-- 92 (376)
T ss_dssp SSSCCCCHHHHHHHTSCCCC-----CS-----SHHHHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHHHHC--
T ss_pred CCCCCCcHHHHHHhcCCCCC-----CC-----CHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHHhcc--
Confidence 34457888888888664421 11 223446788999999999999653 4 4559999999999999987
Q ss_pred cccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHH
Q psy15216 82 YKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGEL 161 (2602)
Q Consensus 82 ~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~l 161 (2602)
++||+|+++.+.|++. .....+...|++++.++.+.++.+|+++++++++++++++++++++||||.++|+++|.++
T Consensus 93 --~~gd~vi~~~~~~~~~-~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l 169 (376)
T 3f0h_A 93 --TKKDKVLVIDGGSFGH-RFVQLCEIHEIPYVALKLEHGKKLTKEKLYEYDNQNFTGLLVNVDETSTAVLYDTMMIGEF 169 (376)
T ss_dssp --CTTCCEEEEESSHHHH-HHHHHHHHTTCCEEEEECCTTCCCCHHHHHTTTTSCCCEEEEESEETTTTEECCHHHHHHH
T ss_pred --CCCCeEEEEeCChhhH-HHHHHHHHcCCceEEEeCCCCCCCCHHHHHHhhccCceEEEEecccCCcceecCHHHHHHH
Confidence 8999999998877763 3334556679999999988888899999999999999999999999999999999999999
Q ss_pred HHhcCCEEEEecccccccccccCCCCCccEEEeccccccC-CCCcEEEEEecCCCCcccceecCCCc----------ccc
Q psy15216 162 CRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYG-PKGIGALYIRRNPRTRIEAQIHGGGH----------EYG 230 (2602)
Q Consensus 162 a~~~g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K~~G-p~G~G~l~~~~~~~~~l~~~~~g~~~----------~~~ 230 (2602)
|++||+++|+|++|+.+..++++..+++|++++|+||++| ++|+|++++++++++.+.+....+.. ...
T Consensus 170 ~~~~~~~li~D~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (376)
T 3f0h_A 170 CKKNNMFFVCDCVSAFLADPFNMNECGADVMITGSQKVLACPPGISVIVLAPRGVERVEKSKVRTMYFDLKDALKNQERG 249 (376)
T ss_dssp HHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEETTTTTCCCSSCEEEEECHHHHHHHHTCCCCCSTTCHHHHHHHHTTT
T ss_pred HHHcCCEEEEEcCccccCccccccccCccEEEecCcccccCCCceEEEEECHHHHHHhhcCCCCceeecHHHHHhhcccC
Confidence 9999999999999999988877777788999999999766 89999999998877666543221110 001
Q ss_pred ccccCcchhHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcccChhHHHH
Q psy15216 231 LRSGTLATHQIVGMGEAFRLARI--EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLM 308 (2602)
Q Consensus 231 ~~~gt~~~~~~~al~~al~~~~~--~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (2602)
....+++...++++.+++++... ++++..++..++++++.+.|.+ + ++.+..+.. .+..+.+..+..+..++..
T Consensus 250 ~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-~~~~~~~~~--~~~~~~~~~~~~~~~~l~~ 325 (376)
T 3f0h_A 250 QTPFTPAVGILLQINERLKEIKKHGGADAEVARIASQAADFRAKIKD-L-PFELVSESP--ANGVTSVHPTTANAYDIFL 325 (376)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTT-S-SEEECCSSB--BTTEEEEEESSSCHHHHHH
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH-c-CCccCcccc--CceEEEEeCCCCCHHHHHH
Confidence 12346666666888888886554 4789999999999999999987 3 677664422 2334444444556777777
Q ss_pred Hh--C-CeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 309 AI--K-DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 309 ~L--~-gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
.| + ||.+++|.... ..+++|++++.++|++|+++++++|++.
T Consensus 326 ~l~~~~gi~v~~g~~~~-------------------~~~~lRis~~~~~t~e~i~~~~~~l~~~ 370 (376)
T 3f0h_A 326 KLKDEYGIWICPNGGEM-------------------KDTIFRVGHIGALTHEDNTTLVNAFKDL 370 (376)
T ss_dssp HHHHHSSEECEECCGGG-------------------TTTCEEEECCSSCCHHHHHHHHHHHHHH
T ss_pred HHHHhCCEEEecCcccc-------------------CCCEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 77 4 99998773211 1378999999999999999999999964
|
| >1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.2e-26 Score=296.94 Aligned_cols=331 Identities=11% Similarity=0.089 Sum_probs=250.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhhcCCCCCCCcch---hhhHHHHHHHHHHHHHHHhCCC-CCcEEEeCCH-HHHHHHHHH
Q psy15216 2 DYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIY---GWTAEKAIEKARNEVAQLIYAD-PREIIWTSGA-TESNNLAIK 76 (2602)
Q Consensus 2 d~a~~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~---~~~~~~~~~~~r~~lA~~~g~~-~~~Iv~t~g~-T~al~~~~~ 76 (2602)
++.+.+++|+.+++++.+++... .+++.+.+.. +.......+++++++++++|++ +++|++++|+ |+|+.+++.
T Consensus 7 ~~~g~~~~p~~v~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~v~~~~g~gt~al~~~~~ 85 (360)
T 1w23_A 7 FNAGPSALPKPALERAQKELLNF-NDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQFTMLPM 85 (360)
T ss_dssp CCSSSCCCCHHHHHHHHHTSSSS-TTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHH
T ss_pred ecCCCcCCCHHHHHHHHHHhhhh-ccccccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEECCcchHHHHHHHH
Confidence 56777799999999999988653 4555433322 4455678899999999999996 4689999999 999999999
Q ss_pred hcccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCC-CCccChHHHHh-hccCCceEEEEecccCccccccc
Q psy15216 77 GAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NGLITLSQLEE-KICSDTILVSVMLVNNEIGVIQP 154 (2602)
Q Consensus 77 ~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~-~~~ld~e~l~~-~i~~~tklv~i~~~~npTG~~~~ 154 (2602)
++... -++||+|+++.++|++. ..++..| +++.+++++ ++.+|++++++ +++++|++|++++++||||.++|
T Consensus 86 ~l~~~-~~~g~~vi~~~~~~~~~----~~~~~~g-~~~~v~~~~~~~~~d~~~l~~~~i~~~~k~v~~~~~~nptG~~~~ 159 (360)
T 1w23_A 86 NLLTK-GTIGNYVLTGSWSEKAL----KEAKLLG-ETHIAASTKANSYQSIPDFSEFQLNENDAYLHITSNNTIYGTQYQ 159 (360)
T ss_dssp HHCCT-TCEEEEEECSHHHHHHH----HHHHTTS-EEEEEEECGGGTSCSCCCGGGCCCCTTEEEEEEESEETTTTEECS
T ss_pred HhcCC-CCcccEEEecchhHHHH----HHHHHhC-CeEEeecccccCcCCccchHhhccCCCCCEEEEeCCCCCcceecc
Confidence 88711 02467888877666552 2234569 999999875 66789999999 99999999999999999999988
Q ss_pred HHHHHHHHHhcCCEEEEecccccccccccCCCCCccEEEeccccccCCCCcEEEEEecCCCCcccceecCCCcc------
Q psy15216 155 ILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHE------ 228 (2602)
Q Consensus 155 l~~I~~la~~~g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K~~Gp~G~G~l~~~~~~~~~l~~~~~g~~~~------ 228 (2602)
+++++||+++|+|++|+.+..++++..+ |++++|+||++||+|+||+++++++++.+.+.. ++...
T Consensus 160 -----~i~~~~~~~li~D~a~~~~~~~~~~~~~--di~~~s~sK~~~~~G~G~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 231 (360)
T 1w23_A 160 -----NFPEINHAPLIADMSSDILSRPLKVNQF--GMIYAGAQKNLGPSGVTVVIVKKDLLNTKVEQV-PTMLQYATHIK 231 (360)
T ss_dssp -----SCCCCCSSCEEEECTTTTTSSCCCGGGC--SEEEEETTTTTSCTTCEEEEEEHHHHCSCCTTC-CGGGCHHHHHH
T ss_pred -----cccccCCceEEEechhhcCCCCcCcccC--CEEEEEcccccCCCCcEEEEEcHHHHhhcccCC-cchhhhhhhhh
Confidence 3444899999999999999877776554 899999999999999999999988777776543 22111
Q ss_pred ccccccCcchhHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHhhccCce-EEeCCCCCCCCceEEEEEccc-Chh
Q psy15216 229 YGLRSGTLATHQIVGMGEAFRLARI--EMKEELKRILFLQKRLYNGLMESIEEI-YINGDMNNRIPHNLNISFNFI-EGE 304 (2602)
Q Consensus 229 ~~~~~gt~~~~~~~al~~al~~~~~--~~~~~~~~~~~l~~~l~~~L~~~~~g~-~l~~~~~~~~~~~~~~~~~~~-~~~ 304 (2602)
.++..++++..+++++.+++++... +++++.++++++++++.+.|.+ ++++ ....++....+.++.+.++.. +..
T Consensus 232 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (360)
T 1w23_A 232 SDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDE-SNGFYVGHAEKGSRSLMNVTFNLRNEELNQ 310 (360)
T ss_dssp TTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHT-TTTSSEESSCGGGBCSSEEEEECSSHHHHH
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH-ccCcccccCCchhccCcEEEEEcCCCccHH
Confidence 2244578899998889889986544 5789999999999999999987 6654 443222212233444544432 345
Q ss_pred HHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 305 SLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 305 ~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
++.+.| +||.++++..+ .+++||+++.+++++++++++++|++.
T Consensus 311 ~~~~~l~~~gi~~~~~~~~---------------------~~~iRis~~~~~~~~~i~~~~~~l~~~ 356 (360)
T 1w23_A 311 QFLAKAKEQGFVGLNGHRS---------------------VGGCRASIYNAVPIDACIALRELMIQF 356 (360)
T ss_dssp HHHHHHHHTTEESCBCCTT---------------------TCSEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCeeeecCCCC---------------------CCeEEEEecCCCCHHHHHHHHHHHHHH
Confidence 566666 78888655421 278999999999999999999999863
|
| >1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.94 E-value=4.2e-26 Score=298.12 Aligned_cols=332 Identities=15% Similarity=0.195 Sum_probs=258.5
Q ss_pred eeecc-CCCCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCC-cEEEeCCHHHHHHHHHH
Q psy15216 1395 NIVFK-DATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPR-EIIWTSGATESNNLAIK 1472 (2602)
Q Consensus 1395 ~v~L~-~~~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~-~iv~t~gaT~al~~al~ 1472 (2602)
..+++ .+..+.++.+.+++.+.+.. + ++....+..+++++++++++|++++ ++++|+|+|+|++.++.
T Consensus 34 ~~~l~~~~~~~~~~~v~~a~~~~~~~-----~-----~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~al~~~~~ 103 (393)
T 1vjo_A 34 SRLLLGPGPSNAHPSVLQAMNVSPVG-----H-----LDPAFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIA 103 (393)
T ss_dssp CCEECSSSCCCCCHHHHHHHSSCCCC-----T-----TSHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHH
T ss_pred cceeccCCCCCCCHHHHHHHhccccc-----c-----cCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCchHHHHHHHHH
Confidence 35565 34567788888888765532 1 1233557788999999999999888 89999999999999999
Q ss_pred hhhhhhccCCCEEEEcCCCCcc--hHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccC-CceEEEEecccccccccc
Q psy15216 1473 GAAHFYKKRGKHIITVQTEHKS--VLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS-DTILVSVMLVNNEIGVIQ 1549 (2602)
Q Consensus 1473 ~l~~~~~~~gd~Vlv~~~~~~s--~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~-~t~lv~l~~~~n~tG~~~ 1549 (2602)
++. ++||+|++++++|++ +...+ ...|++++.++.++++.+|+++|++++++ ++++|++++++||||.+.
T Consensus 104 ~~~----~~gd~Vl~~~~~~~~~~~~~~~---~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 176 (393)
T 1vjo_A 104 NAV----EPGDVVLIGVAGYFGNRLVDMA---GRYGADVRTISKPWGEVFSLEELRTALETHRPAILALVHAETSTGARQ 176 (393)
T ss_dssp HHC----CTTCEEEEEESSHHHHHHHHHH---HHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEEC
T ss_pred hcc----CCCCEEEEEcCChhHHHHHHHH---HHcCCceEEEecCCCCCCCHHHHHHHHhhCCceEEEEeccCCCcceec
Confidence 986 799999999999998 44443 44599999999988888999999999998 899999999999999999
Q ss_pred ChHHHHHHhhhcCCEEEEecccccCcccccCCCCCccEEEEcccc-ccCCCceEEEEEecCCCCccc-------cccccC
Q psy15216 1550 PILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIE-------AQIHGG 1621 (2602)
Q Consensus 1550 ~l~~I~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K-~~gp~G~G~l~~~~~~~~~l~-------~~~~g~ 1621 (2602)
|+++|.++|++||+++|+|++|++|..++++..+++|++++|+|| +.+|.|+|++++++++++.+. +.+++.
T Consensus 177 ~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~di~~~s~sK~l~~~~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~ 256 (393)
T 1vjo_A 177 PLEGVGELCREFGTLLLVDTVTSLGGVPIFLDAWGVDLAYSCSQKGLGCSPGASPFTMSSRAIEKLQRRRTKVANWYLDM 256 (393)
T ss_dssp CCTTHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEECCSSSTTCSCSSCEEEEECHHHHHHHHTCSSCCSCSTTCH
T ss_pred cHHHHHHHHHHcCCEEEEECCccccCcCCcccccCccEEEEcCcccccCCCceEEEEECHHHHHHHhccCCCCCceecCc
Confidence 999999999999999999999998888888877889999999999 556767999999987654442 111110
Q ss_pred C------ccccCCCCCcchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEE
Q psy15216 1622 G------HEYGLRSGTLATHQIVGMGEAFRLAR-IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISF 1694 (2602)
Q Consensus 1622 ~------~~~~~~~gt~~~~~~~al~~aL~~~~-~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~ 1694 (2602)
. ....+..|+++...+.++.++++... .++++.++++.++++++.+.|.+ . ++.+..+.....+.+..+.+
T Consensus 257 ~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~~~ 334 (393)
T 1vjo_A 257 NLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLED-I-GLSLHVEKEYRLPTLTTVCI 334 (393)
T ss_dssp HHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-T-TCCBSSCGGGBCSSEEEEEC
T ss_pred HhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHH-c-CCcccCCccccCCcEEEEEc
Confidence 0 01123334888888988889998643 45788999999999999999988 4 77665443222344555555
Q ss_pred e-cCCcHHHHHhc--C-CEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecC-CCCCHHHHHHHHHHHHH
Q psy15216 1695 N-FIEGESLLMAI--K-DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIG-RFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1695 ~-~~~~~~~~~~L--~-gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~-~~~t~edid~li~~L~~ 1764 (2602)
+ +.+..++...| + ||.+++|..|... +++||++. ..++++++++++++|++
T Consensus 335 ~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~-------------------~~iRis~~~~~~~~~~i~~~~~~l~~ 390 (393)
T 1vjo_A 335 PDGVDGKAVARRLLNEHNIEVGGGLGELAG-------------------KVWRVGLMGFNSRKESVDQLIPALEQ 390 (393)
T ss_dssp CTTCCHHHHHHHHHHHHCEECEECCGGGTT-------------------TEEEEECCGGGCSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHhhCCEEEecCccccCC-------------------CEEEEeCCccCChHHHHHHHHHHHHH
Confidence 4 34566677666 5 9999988765432 78999954 44577789999999986
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.2e-26 Score=298.28 Aligned_cols=340 Identities=13% Similarity=0.151 Sum_probs=253.0
Q ss_pred eeeccC--CCCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHH-HHHHhCCCCCcEEEeCCHHHHHHHHH
Q psy15216 1395 NIVFKD--ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNE-VAQLIYADPREIIWTSGATESNNLAI 1471 (2602)
Q Consensus 1395 ~v~L~~--~~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~-ia~~~g~~~~~iv~t~gaT~al~~al 1471 (2602)
.++++. ...+.++.+.+++.+.+...........+..++.......++|++ +++++|.+ ++++|+|+|+|+..++
T Consensus 9 ~i~ld~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~~~~--~v~~~~g~t~a~~~~~ 86 (371)
T 2e7j_A 9 FINIDPLQTGGKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCD--VARVTNGAREAKFAVM 86 (371)
T ss_dssp CEECCHHHHTCCCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTTSS--EEEEESSHHHHHHHHH
T ss_pred cEEecccccCCCCCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHcCCC--EEEEeCChHHHHHHHH
Confidence 456654 245778899999998876532111100122334455678899999 99999987 9999999999999999
Q ss_pred HhhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEec--cCCCCCcChhHHHhhcc-----CCceEEEEeccccc
Q psy15216 1472 KGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLK--PKNNGLITLSQLEEKIC-----SDTILVSVMLVNNE 1544 (2602)
Q Consensus 1472 ~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~--~~~~~~id~d~l~~~i~-----~~t~lv~l~~~~n~ 1544 (2602)
.++. ++||+|++++++|+++...+.. .|++++.++ .++++.+|+++|+++++ +++++|++++++||
T Consensus 87 ~~~~----~~gd~vl~~~~~~~~~~~~~~~---~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~~~~np 159 (371)
T 2e7j_A 87 HSLA----KKDAWVVMDENCHYSSYVAAER---AGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGN 159 (371)
T ss_dssp HHHC----CTTCEEEEETTCCHHHHHHHHH---TTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTT
T ss_pred HHHh----CCCCEEEEccCcchHHHHHHHH---cCCeEEEeecccCCCCCcCHHHHHHHHHhhcccCCeEEEEEECCCCC
Confidence 9986 7999999999999998877544 499999999 77778899999999998 78999999999999
Q ss_pred cccccChHHHHHHhhhcCCEEEEecccccCcccccCCCCCccEEEEcccc-ccCCCceEEEEEecCCCCc-cccccccCC
Q psy15216 1545 IGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTR-IEAQIHGGG 1622 (2602)
Q Consensus 1545 tG~~~~l~~I~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K-~~gp~G~G~l~~~~~~~~~-l~~~~~g~~ 1622 (2602)
||.++|+++|.++|++||+++|+|++|+.+..++++..+++|++++|+|| ++++.|+|++++++++++. +.+...++.
T Consensus 160 tG~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~sK~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~ 239 (371)
T 2e7j_A 160 YGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMPVSLKEIGADFIVGSGHKSMAASGPIGVMGMKEEWAEIVLRRSEKYKN 239 (371)
T ss_dssp TCCCCCHHHHHHHHHTTTCCEEEECTTTBTTBCCCHHHHTCSEEEEEHHHHSSCCSSCEEEEECTTTTTTTTCBCSSCTT
T ss_pred CcccCCHHHHHHHHHHcCCeEEEECccccCCCCCChhhcCCCEEEecCCcCCCCCCCcEEEEEechhhhhhccccccCcc
Confidence 99999999999999999999999999999887666666678999999999 6666679999999988887 776554333
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecCCcH
Q psy15216 1623 HEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRI--LFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGE 1700 (2602)
Q Consensus 1623 ~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~--~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~ 1700 (2602)
....++.++++..+++++.+++++... ...++. .++++++.+.|.+ . ++.+..+... ...+..+.++ +..
T Consensus 240 ~~~~~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~~l~~~L~~-~-~~~~~~~~~~-~~~~~~~~~~--~~~ 311 (371)
T 2e7j_A 240 KEVELLGCTARGATIITLMASFPHVRE---RIKRWDEEVEKARRFAAEMEK-L-GIKQLGDNPH-NHDLMFFHAE--VLY 311 (371)
T ss_dssp SBGGGTTCCCCSHHHHHHHHHHHHHHH---HGGGHHHHHHHHHHHHHHHHH-T-TCEEESSSSC-CSSEEEEECH--HHH
T ss_pred cccccccCCcCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-c-CcEEecCCCc-cCceEEEECC--CHH
Confidence 333344778888888888888876543 566777 8899999999988 4 7877754321 1234444444 455
Q ss_pred HHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEE-EecCCC-CCHHHHHHHHHHHHHh
Q psy15216 1701 SLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIR-FTIGRF-TTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1701 ~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iR-ls~~~~-~t~edid~li~~L~~~ 1765 (2602)
++...| +||.+.+ ..+... .-+.. .+++| ++++.+ +|.+++++++++|++.
T Consensus 312 ~~~~~l~~~gi~~~~-~~~~~~---------~~g~~----~~~iRii~~~~~~~~~~~i~~~~~~l~~~ 366 (371)
T 2e7j_A 312 EISKKAKGGRFFLYR-ELKSRK---------IHGIK----PGLTRYFKLSTYGLSDEEVDYVLNAFKEI 366 (371)
T ss_dssp HHHHHSSSGGGHHHH-HHHHTT---------EECSC----TTCCSEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCEEEEe-cccccc---------ccCCC----CCceEEEEeeccCCCHHHHHHHHHHHHHH
Confidence 666666 5666654 211100 00111 37899 999988 8999999999999873
|
| >1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.94 E-value=7.6e-26 Score=292.55 Aligned_cols=324 Identities=14% Similarity=0.137 Sum_probs=249.7
Q ss_pred CCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCC--CCcEEEeCCHHHHHHHHHHhccccccc
Q psy15216 7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYAD--PREIIWTSGATESNNLAIKGAAHFYKK 84 (2602)
Q Consensus 7 ~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~--~~~Iv~t~g~T~al~~~~~~l~~~~~~ 84 (2602)
.++|+.+.+++.+.+ . + .++.......+++|+++++++|.+ ++++++++|+|+|+++++.++. +
T Consensus 13 ~~~~~~v~~a~~~~~----~--~----~~~~~~~~~~~~l~~~la~~~g~~~~~~~v~~~~g~t~a~~~~~~~~~----~ 78 (366)
T 1m32_A 13 LTTSRTVKEAMLFDS----C--T----WDDDYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSAL----G 78 (366)
T ss_dssp CCCCHHHHHTTCCCC----C--T----TSHHHHTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHSC----C
T ss_pred cCCCHHHHHHHhhhh----c--C----CCHHHHHHHHHHHHHHHHHHhCCCCcCcEEEEecChHHHHHHHHHHhc----C
Confidence 367788888776632 1 1 111111146789999999999942 2379999999999999999997 7
Q ss_pred CCCEEEEcC-CCCcc-cHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccC--CceEEEEecccCcccccccHHHHHH
Q psy15216 85 RGKHIITVQ-TEHKS-VLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS--DTILVSVMLVNNEIGVIQPILEIGE 160 (2602)
Q Consensus 85 ~gd~Vlv~~-~~~~s-~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~--~tklv~i~~~~npTG~~~~l~~I~~ 160 (2602)
+||+|++.+ +.|++ +.... ...|++++.+++++++.+|+++|++++++ ++++|++++++||||.++|+++|.+
T Consensus 79 ~gd~vi~~~~~~~~~~~~~~~---~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~i~~ 155 (366)
T 1m32_A 79 PQDKVLIVSNGAYGARMVEMA---GLMGIAHHAYDCGEVARPDVQAIDAILNADPTISHIAMVHSETTTGMLNPIDEVGA 155 (366)
T ss_dssp TTCCEEEEESSHHHHHHHHHH---HHHTCCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECCHHHHHH
T ss_pred CCCeEEEEeCCCccHHHHHHH---HHhCCceEEEeCCCCCCCCHHHHHHHHhcCCCeEEEEEecccCCcceecCHHHHHH
Confidence 899877664 66765 22333 34499999999888888999999999975 5889999999999999999999999
Q ss_pred HHHhcCCEEEEecccccccccccCCCCCccEEEecccc-ccCCCCcEEEEEecCCCCcccceecCCCc-----------c
Q psy15216 161 LCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGH-----------E 228 (2602)
Q Consensus 161 la~~~g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K-~~Gp~G~G~l~~~~~~~~~l~~~~~g~~~-----------~ 228 (2602)
+|++||+++|+|++|+.+..++++..+++|++++|+|| ++||.|+|++++++++++.+.+...++.. .
T Consensus 156 l~~~~~~~li~Dea~~~~~~~~~~~~~~~di~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (366)
T 1m32_A 156 LAHRYGKTYIVDAMSSFGGIPMDIAALHIDYLISSANKCIQGVPGFAFVIAREQKLAACKGHSRSLSLDLYAQWRCMEDN 235 (366)
T ss_dssp HHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCSSEEEEEEEHHHHTTCTTCCSCSTTCHHHHHHHHHHT
T ss_pred HHHHcCCEEEEECCccccCcCccccccCccEEEecCcccccCCCceEEEEECHHHHHhhcCCCCCccccHHHHHhhhccc
Confidence 99999999999999999888878777789999999999 56898999999999877776543211110 0
Q ss_pred ccccccCcchhHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEc---ccCh
Q psy15216 229 YGLRSGTLATHQIVGMGEAFRLARIE--MKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN---FIEG 303 (2602)
Q Consensus 229 ~~~~~gt~~~~~~~al~~al~~~~~~--~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~---~~~~ 303 (2602)
.....++++...++++.++++..... +++..++++++++++.+.|.+ + ++.+..++....+.++.+.++ ..+.
T Consensus 236 ~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (366)
T 1m32_A 236 HGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRA-L-GFNTLLDDELHSPIITAFYSPEDPQYRF 313 (366)
T ss_dssp TTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH-T-TCCBSSCGGGBCSSEEEEECCCCTTCCH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHHHHH-C-CCeeccCchhcCceEEEEEcCccCCCCH
Confidence 01224678888888888899865443 788999999999999999987 4 776654422223445566665 3456
Q ss_pred hHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 304 ESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 304 ~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
.++.+.| +||.++++..|. .+++|++++.+++++|+++++++|++.
T Consensus 314 ~~~~~~l~~~gi~v~~~~~~~--------------------~~~iRi~~~~~~~~~~i~~~~~~l~~~ 361 (366)
T 1m32_A 314 SEFYRRLKEQGFVIYPGKVSQ--------------------SDCFRIGNIGEVYAADITALLTAIRTA 361 (366)
T ss_dssp HHHHHHHHHTTEECEECCCSS--------------------SCEEEEECCSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCEEEECCcCCC--------------------CCEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 6777777 799998887652 278999999999999999999999863
|
| >3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=7.8e-26 Score=295.57 Aligned_cols=331 Identities=16% Similarity=0.229 Sum_probs=259.1
Q ss_pred cCCCCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCC-cEEEeCCHHHHHHHHHHhhhhh
Q psy15216 1399 KDATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPR-EIIWTSGATESNNLAIKGAAHF 1477 (2602)
Q Consensus 1399 ~~~~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~-~iv~t~gaT~al~~al~~l~~~ 1477 (2602)
.....+.++.+.+++.+.+. + + ..........+++++++++++.+.+ ++++|+|+++|+..++.++.
T Consensus 28 ~p~p~~~~~~v~~a~~~~~~----~-~-----~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~~al~~~~~~~~-- 95 (393)
T 3kgw_A 28 GPGPSNLAPRVLAAGSLRMI----G-H-----MQKEMLQIMEEIKQGIQYVFQTRNPLTLVVSGSGHCAMETALFNLL-- 95 (393)
T ss_dssp SSSCCCCCHHHHHHTTCCCC----C-T-----TSHHHHHHHHHHHHHHHHHHTCCCSEEEEESCCTTTHHHHHHHHHC--
T ss_pred cCCCCCCCHHHHHHhccccc----C-c-----ccHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCcHHHHHHHHHhcC--
Confidence 34556778888877755321 1 1 1233456788999999999998655 49999999999999999886
Q ss_pred hccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccC-CceEEEEeccccccccccChHHHHH
Q psy15216 1478 YKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS-DTILVSVMLVNNEIGVIQPILEIGE 1556 (2602)
Q Consensus 1478 ~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~-~t~lv~l~~~~n~tG~~~~l~~I~~ 1556 (2602)
++||+|+++.+.|.+.. ....+...|++++.++.+.++.+|+++|++++++ ++++|++++++||||.+.|+++|.+
T Consensus 96 --~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~ 172 (393)
T 3kgw_A 96 --EPGDSFLTGTNGIWGMR-AAEIADRIGARVHQMIKKPGEHYTLQEVEEGLAQHKPVLLFLVHGESSTGVVQPLDGFGE 172 (393)
T ss_dssp --CTTCEEEEEESSHHHHH-HHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHH
T ss_pred --CCCCEEEEEeCCchhHH-HHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHhhCCCcEEEEeccCCcchhhccHHHHHH
Confidence 89999999987775431 2344455699999999988888999999999998 9999999999999999999999999
Q ss_pred HhhhcCCEEEEecccccCcccccCCCCCccEEEEcccc-ccCCCceEEEEEecCCCCccccc----------------cc
Q psy15216 1557 LCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQ----------------IH 1619 (2602)
Q Consensus 1557 ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K-~~gp~G~G~l~~~~~~~~~l~~~----------------~~ 1619 (2602)
+|++||+++|+|++|+.|..++++..+++|++++|+|| ++|+.|+|++++++++++.+.+. ++
T Consensus 173 l~~~~~~~li~De~~~~g~~~~~~~~~~~d~~~~s~sK~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (393)
T 3kgw_A 173 LCHRYQCLLLVDSVASLGGVPIYMDQQGIDIMYSSSQKVLNAPPGISLISFNDKAKYKVYSRKTKPVSFYTDITYLAKLW 252 (393)
T ss_dssp HHHHTTCEEEEECTTTTTTSCCCTTTTTCCEEEEESSSTTCCCSSCEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHT
T ss_pred HHHHcCCEEEEECCccccCcccchhhcCCCEEEecCcccccCCCceeEEEECHHHHHHHhccCCCCCceeecHHHHHHhh
Confidence 99999999999999999888888888889999999999 67899999999998765554321 12
Q ss_pred cCCccccCCCCCcchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCC-CCCCCceEEEEEe-c
Q psy15216 1620 GGGHEYGLRSGTLATHQIVGMGEAFRLAR-IEMKEELKRILFLQKRLYNGLMESIEEIYINGDM-NNRIPHNLNISFN-F 1696 (2602)
Q Consensus 1620 g~~~~~~~~~gt~~~~~~~al~~aL~~~~-~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~-~~~~~~~~~~~~~-~ 1696 (2602)
++....++..++++...+.++.++++... .++++..+++.++++++.+.|.+ . ++.+..+. ....+....+.++ .
T Consensus 253 ~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~~~~~~~ 330 (393)
T 3kgw_A 253 GCEGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWRRHREATAHLHKHLQE-M-GLKFFVKDPEIRLPTITTVTVPAG 330 (393)
T ss_dssp TCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-T-TCCBSSSSGGGBCSSEEEEECCTT
T ss_pred hhccccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-c-CCeeccCChhhcCCeEEEEeCCCC
Confidence 22233456678899999999988988544 45889999999999999999988 4 66665332 2233444556655 3
Q ss_pred CCcHHHHHhc--C-CEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEec-CCCCCHHHHHHHHHHHHHh
Q psy15216 1697 IEGESLLMAI--K-DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTI-GRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1697 ~~~~~~~~~L--~-gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~-~~~~t~edid~li~~L~~~ 1765 (2602)
.+..++...| + ||.+++|..+... +++|+++ +..+|.+|+++++++|++.
T Consensus 331 ~~~~~~~~~l~~~~gi~v~~g~~~~~~-------------------~~iRi~~~~~~~~~~~i~~~~~~l~~~ 384 (393)
T 3kgw_A 331 YNWRDIVSYVLDHFSIEISGGLGPTEE-------------------RVLRIGLLGYNATTENVDRVAEALREA 384 (393)
T ss_dssp BCHHHHHHHHHHHHCEECBCCCGGGTT-------------------TEEEEECCGGGCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCEEEeCCcccCCC-------------------CEEEEEecccCCCHHHHHHHHHHHHHH
Confidence 4566777666 4 9999988754332 7999998 4445999999999999974
|
| >2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-25 Score=289.13 Aligned_cols=330 Identities=11% Similarity=0.084 Sum_probs=243.7
Q ss_pred eecc-CCCCCCCHHHHHHHHHHHhhccCCCCCc---cchhHHHHHHHHHHHHHHHHHHhCCCCC-c-EEEeCCHHHHHHH
Q psy15216 1396 IVFK-DATTPIDPRVVDKMIPYLRVQFGNPASR---NHIYGWTAEKAIEKARNEVAQLIYADPR-E-IIWTSGATESNNL 1469 (2602)
Q Consensus 1396 v~L~-~~~~~~~~~v~eal~~~l~~~~~np~~~---~~~~~~~~~~~~~~lr~~ia~~~g~~~~-~-iv~t~gaT~al~~ 1469 (2602)
++++ .++.+.|+.+++++.+.+.... +++.+ .+..+....+..+++++++++++|++++ + +++|+|+|+|++.
T Consensus 5 ~~l~~~~~~~~~~~v~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~i~~t~g~t~a~~~ 83 (362)
T 2c0r_A 5 AYNFNAGPAALPLEVLERAQAEFVDYQ-HTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQFAM 83 (362)
T ss_dssp CEECCSSSCCCCHHHHHHHHHTSSSST-TSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHHH
T ss_pred eeeccCCCCCCCHHHHHHHHHHHhhhh-hcCccccccCCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCchHHHHH
Confidence 3443 5667899999999999886532 22211 1122445567889999999999999764 6 4678999999999
Q ss_pred HHHhhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCC--CC--CcChhHHHhhccCCceEEEEecccccc
Q psy15216 1470 AIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NG--LITLSQLEEKICSDTILVSVMLVNNEI 1545 (2602)
Q Consensus 1470 al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~--~id~d~l~~~i~~~t~lv~l~~~~n~t 1545 (2602)
++.++. ++||+|+++.+.|.+.. ....++..| ++++++.+. ++ .+|.++++ ++++|++|+++|++|||
T Consensus 84 ~~~~l~----~~gd~vl~~~~~~~~~~-~~~~~~~~g-~~~~v~~~~~~~~~~~~~~~~~~--i~~~t~~v~~~~~~n~t 155 (362)
T 2c0r_A 84 IPMNFL----KEGQTANYVMTGSWASK-ALKEAKLIG-DTHVAASSEASNYMTLPKLQEIQ--LQDNAAYLHLTSNETIE 155 (362)
T ss_dssp HHHHHC----CTTCEEEEEECSHHHHH-HHHHHHHHS-CEEEEEECGGGTTCSCCCGGGCC--CCTTEEEEEEESEETTT
T ss_pred HHHhcC----CCCCeEEEEecCcHhHH-HHHHHHHhC-CeEEEecccccccccCCCHHHcc--cCCCcCEEEEeCCcCcc
Confidence 999987 79999998876655532 123334448 899998762 22 35666654 78899999999999999
Q ss_pred ccc-cChHHHHHHhhhcCCEEEEecccccCcccccCCCCCccEEEEccccccCCCceEEEEEecCCCCcccccc---ccC
Q psy15216 1546 GVI-QPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQI---HGG 1621 (2602)
Q Consensus 1546 G~~-~~l~~I~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K~~gp~G~G~l~~~~~~~~~l~~~~---~g~ 1621 (2602)
|.+ .|+++| ||+++++|++|+.+..++++.++ |++++|+||++||+|+||+++++++++.+.+.. +.+
T Consensus 156 G~~~~~l~~i------~~~~vivD~a~~~~~~~~~~~~~--d~~~~s~~K~~g~~G~G~l~~~~~~~~~l~~~~~~~~~~ 227 (362)
T 2c0r_A 156 GAQFKAFPDT------GSVPLIGDMSSDILSRPFDLNQF--GLVYAGAQKNLGPSGVTVVIVREDLVAESPKHLPTMLRY 227 (362)
T ss_dssp TEECSSCCCC------TTSCEEEECTTTTTSSCCCGGGC--SEEEEETTTTTCCSSCEEEEEEGGGSSSCCTTSCGGGCH
T ss_pred ceeccccccc------CCCEEEEEChhhccCCccchhHC--cEEEEeccccccCcCcEEEEEcHHHHhhccccCchHHhH
Confidence 996 678776 89999999999999888776654 899999999889999999999998877765421 110
Q ss_pred --CccccCCCCCcchhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhcCCcE-EEeCCCCCCCCceEEEEEec
Q psy15216 1622 --GHEYGLRSGTLATHQIVGMGEAFRLARI--EMKEELKRILFLQKRLYNGLMESIEEI-YINGDMNNRIPHNLNISFNF 1696 (2602)
Q Consensus 1622 --~~~~~~~~gt~~~~~~~al~~aL~~~~~--~~~~~~~~~~~l~~~l~~~L~~~~~gl-~i~~~~~~~~~~~~~~~~~~ 1696 (2602)
........+|++...++++.+||+.... +++.+.++++++++++++.|.+ .+++ .+..++....+....+.++.
T Consensus 228 ~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (362)
T 2c0r_A 228 DTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQ-SGGFYRGCVDVDSRSDMNITFRLAS 306 (362)
T ss_dssp HHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHT-STTSSEESSCGGGBCSSEEEEECSC
T ss_pred HHHhhccCcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH-cCCccccCCChHHcCCcEEEEEcCC
Confidence 0012234578999999999999997655 6899999999999999999987 4435 66543222223333344432
Q ss_pred -CCcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1697 -IEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1697 -~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
.+..++...| +||.+.+|..+ .+++|+|++.++|.+|+++++++|++
T Consensus 307 ~~~~~~~~~~L~~~gi~~~~g~~~---------------------~~~iRis~~~~~~~e~i~~l~~~l~~ 356 (362)
T 2c0r_A 307 EELEKEFVKASEQEGFVGLKGHRS---------------------VGGLRASIYNAVPYESCEALVQFMEH 356 (362)
T ss_dssp HHHHHHHHHHHHHTTEESCBCCTT---------------------TCSEEEECCTTSCHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHCCCeeccCCCC---------------------CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 2345666666 79987766432 15699999999999999999999987
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.94 E-value=2.6e-25 Score=287.14 Aligned_cols=305 Identities=17% Similarity=0.102 Sum_probs=243.4
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCC
Q psy15216 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK 87 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd 87 (2602)
++|+.+.+++.+.+...+.+|+ ....++|+++++++|+++++|++|+|+|+|+++++.++. ++||
T Consensus 45 ~~~~~v~~a~~~~~~~~~~y~~-----------~~~~~lr~~la~~~~~~~~~v~~~~g~t~a~~~~~~~~~----~~gd 109 (363)
T 3ffh_A 45 GTSKKVAAIQANSSVETEIYPD-----------GWASSLRKEVADFYQLEEEELIFTAGVDELIELLTRVLL----DTTT 109 (363)
T ss_dssp CCCHHHHHHHHTCBSCCCBC---------------CHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHC----STTC
T ss_pred CCCHHHHHHHHHHHHHhhcCCC-----------cchHHHHHHHHHHhCCChhhEEEeCCHHHHHHHHHHHHc----cCCC
Confidence 5788999988886644333332 245789999999999988999999999999999999987 7999
Q ss_pred EEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHhc--
Q psy15216 88 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSK-- 165 (2602)
Q Consensus 88 ~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~~-- 165 (2602)
+|+++.+.|+++...++.. |++++.++.++++.+|++++++++++++++|++++|+||||.++|+++|.++++.+
T Consensus 110 ~vl~~~~~~~~~~~~~~~~---g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~ 186 (363)
T 3ffh_A 110 NTVMATPTFVQYRQNALIE---GAEVREIPLLQDGEHDLEGMLNAIDEKTTIVWICNPNNPTGNYIELADIQAFLDRVPS 186 (363)
T ss_dssp EEEEEESSCHHHHHHHHHH---TCEEEEEECCTTSCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHTTSCT
T ss_pred EEEEcCCChHHHHHHHHHc---CCEEEEecCCCCCCcCHHHHHHhcccCCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCC
Confidence 9999999999987777666 99999999988889999999999999999999999999999999999999999887
Q ss_pred CCEEEEecccccccc-----cccC-CCCCccEEEeccccccCCCCc--EEEEEecCCCCcccceecCCCccccccccCcc
Q psy15216 166 GVIFHCDAAQAVGKI-----DINI-QNYKVDLMSFSAHKIYGPKGI--GALYIRRNPRTRIEAQIHGGGHEYGLRSGTLA 237 (2602)
Q Consensus 166 g~~livD~a~a~g~~-----~~dl-~~~~~D~~~~S~~K~~Gp~G~--G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~ 237 (2602)
|+++|+|++|+.... .... ...+.++++.|++|.+|++|. ||+++++++++.+.+.. ..++++
T Consensus 187 ~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~---------~~~~~~ 257 (363)
T 3ffh_A 187 DVLVVLDEAYIEYVTPQPEKHEKLVRTYKNLIITRTFSKIYGLASARVGYGIADKEIIRQLNIVR---------PPFNTT 257 (363)
T ss_dssp TSEEEEECTTGGGCSSCCCCCGGGGGTCTTEEEEEESSSTTCCSSCCCEEEEECHHHHHHHHHTC---------CSCCCB
T ss_pred CcEEEEeCchHhhcCccccCHHHHhhcCCCEEEEeechhhhcCchhceeeeecCHHHHHHHHHhC---------CCCCCC
Confidence 999999999983321 1111 122345888899999998885 99999887777665443 234677
Q ss_pred hhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcccChhHHHHHh--CCeEE
Q psy15216 238 THQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDIAV 315 (2602)
Q Consensus 238 ~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~v 315 (2602)
....+++.++++. ..++++..+++.++++++.+.|.+ .+++.+..+.. .++.+.++. +..++.+.| +||.+
T Consensus 258 ~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~l~~~l~~-~~g~~~~~~~~----~~~~~~~~~-~~~~~~~~l~~~gi~v 330 (363)
T 3ffh_A 258 SIGQKLAIEAIKD-QAFIGECRTSNANGIKQYEAFAKR-FEKVKLYPANG----NFVLIDLGI-EAGTIFSYLEKNGYIT 330 (363)
T ss_dssp HHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHH-CTTCEECCCCS----SEEEEECSS-CHHHHHHHHHHTTEEC
T ss_pred HHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHhh-CCCceECCCCC----eEEEEECCC-CHHHHHHHHHHCCeEE
Confidence 7888888788873 256788899999999999999987 67888764322 334444443 666777776 79999
Q ss_pred cccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 316 SSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 316 ~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
++|..+.. ++++||+++ +++|+++++++|++
T Consensus 331 ~~g~~~~~-------------------~~~iRis~~---~~~~i~~~~~~l~~ 361 (363)
T 3ffh_A 331 RSGAALGF-------------------PTAVRITIG---KEEDNSAVIALLEK 361 (363)
T ss_dssp EETTTTTC-------------------TTEEEEECC---CHHHHHHHHHHHHH
T ss_pred EeCccCCC-------------------CCeEEEECC---CHHHHHHHHHHHHH
Confidence 98876543 289999998 99999999999985
|
| >3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.9e-25 Score=289.93 Aligned_cols=330 Identities=13% Similarity=0.111 Sum_probs=253.1
Q ss_pred ccCCCCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCC-cEE-EeCCHHHHHHHHHHhhh
Q psy15216 1398 FKDATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPR-EII-WTSGATESNNLAIKGAA 1475 (2602)
Q Consensus 1398 L~~~~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~-~iv-~t~gaT~al~~al~~l~ 1475 (2602)
+..+..+.++.+++++.+.+. .+. ........+++++++++++|++++ +++ +|+|+|+|++.++.++.
T Consensus 23 ~~pgp~~~~~~v~~a~~~~~~-----~~~-----~~~~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~~~~ 92 (376)
T 3f0h_A 23 FTVGPVMSSEEVRAIGAEQVP-----YFR-----TTEFSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMNCF 92 (376)
T ss_dssp CSSSSCCCCHHHHHHHTSCCC-----CCS-----SHHHHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHHHHC
T ss_pred ecCCCCCCcHHHHHHhcCCCC-----CCC-----CHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHHhcc
Confidence 344556788888888866442 111 234456788999999999999653 554 58999999999999987
Q ss_pred hhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccCCceEEEEeccccccccccChHHHH
Q psy15216 1476 HFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIG 1555 (2602)
Q Consensus 1476 ~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~ 1555 (2602)
++||+|+++.+.|++.. ....+...|++++.++.+.++.+|+++++++++++|++|++++++||||.++|+++|.
T Consensus 93 ----~~gd~vi~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~ 167 (376)
T 3f0h_A 93 ----TKKDKVLVIDGGSFGHR-FVQLCEIHEIPYVALKLEHGKKLTKEKLYEYDNQNFTGLLVNVDETSTAVLYDTMMIG 167 (376)
T ss_dssp ----CTTCCEEEEESSHHHHH-HHHHHHHTTCCEEEEECCTTCCCCHHHHHTTTTSCCCEEEEESEETTTTEECCHHHHH
T ss_pred ----CCCCeEEEEeCChhhHH-HHHHHHHcCCceEEEeCCCCCCCCHHHHHHhhccCceEEEEecccCCcceecCHHHHH
Confidence 89999999988776643 3344556699999999988888999999999999999999999999999999999999
Q ss_pred HHhhhcCCEEEEecccccCcccccCCCCCccEEEEccccccC-CCceEEEEEecCCCCccccccccCCc----------c
Q psy15216 1556 ELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYG-PKGIGALYIRRNPRTRIEAQIHGGGH----------E 1624 (2602)
Q Consensus 1556 ~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K~~g-p~G~G~l~~~~~~~~~l~~~~~g~~~----------~ 1624 (2602)
++|++||+++|+|++|+.+..++++..+++|++++|+||.++ +.|+|++++++++++.+.+....+.. .
T Consensus 168 ~l~~~~~~~li~D~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (376)
T 3f0h_A 168 EFCKKNNMFFVCDCVSAFLADPFNMNECGADVMITGSQKVLACPPGISVIVLAPRGVERVEKSKVRTMYFDLKDALKNQE 247 (376)
T ss_dssp HHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEETTTTTCCCSSCEEEEECHHHHHHHHTCCCCCSTTCHHHHHHHHT
T ss_pred HHHHHcCCEEEEEcCccccCccccccccCccEEEecCcccccCCCceEEEEECHHHHHHhhcCCCCceeecHHHHHhhcc
Confidence 999999999999999999888777776778999999999665 89999999998766555432111100 0
Q ss_pred ccCCCCCcchhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecCCcHHH
Q psy15216 1625 YGLRSGTLATHQIVGMGEAFRLARI--EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESL 1702 (2602)
Q Consensus 1625 ~~~~~gt~~~~~~~al~~aL~~~~~--~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~ 1702 (2602)
......+++...++++.+++++... +++.+.++..++++++.+.|.+ + ++.+..+. ..+....+..+..+..++
T Consensus 248 ~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-~~~~~~~~--~~~~~~~~~~~~~~~~~l 323 (376)
T 3f0h_A 248 RGQTPFTPAVGILLQINERLKEIKKHGGADAEVARIASQAADFRAKIKD-L-PFELVSES--PANGVTSVHPTTANAYDI 323 (376)
T ss_dssp TTCCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTT-S-SEEECCSS--BBTTEEEEEESSSCHHHH
T ss_pred cCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH-c-CCccCccc--cCceEEEEeCCCCCHHHH
Confidence 1122346666777888888886554 4888999999999999999987 3 67665432 123333333334566777
Q ss_pred HHhc--C-CEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1703 LMAI--K-DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1703 ~~~L--~-gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
...| + ||.+++|.... ..+++|++++.++|.+|+++++++|++.
T Consensus 324 ~~~l~~~~gi~v~~g~~~~-------------------~~~~lRis~~~~~t~e~i~~~~~~l~~~ 370 (376)
T 3f0h_A 324 FLKLKDEYGIWICPNGGEM-------------------KDTIFRVGHIGALTHEDNTTLVNAFKDL 370 (376)
T ss_dssp HHHHHHHSSEECEECCGGG-------------------TTTCEEEECCSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCEEEecCcccc-------------------CCCEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 7666 4 99998774221 1278999999999999999999999973
|
| >1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.94 E-value=4.4e-25 Score=290.75 Aligned_cols=338 Identities=16% Similarity=0.161 Sum_probs=258.2
Q ss_pred ceeeeccC-CCCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHH
Q psy15216 1393 YTNIVFKD-ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAI 1471 (2602)
Q Consensus 1393 ~~~v~L~~-~~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al 1471 (2602)
...+||+. +..+.++.+.+++.+.+...++++... ..+.........++++++++++|+++++|++|+|+++++..++
T Consensus 27 ~~~~yld~~~~~~~~~~v~~a~~~~l~~~~~~~~~~-~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~al~~al 105 (416)
T 1qz9_A 27 EGVIYLDGNSLGARPVAALARAQAVIAEEWGNGLIR-SWNSAGWRDLSERLGNRLATLIGARDGEVVVTDTTSINLFKVL 105 (416)
T ss_dssp TTCEECCTTTSCCCBTTHHHHHHHHHHTCCCCCGGG-HHHHTSGGGHHHHHHHHHHTTTTCCTTSEEECSCHHHHHHHHH
T ss_pred CCeEeecCCCcCCCcHHHHHHHHHHHHHHHhccCcc-ccchhhHHHHHHHHHHHHHHHcCCCcccEEEeCChhHHHHHHH
Confidence 45688874 445778889999999987655554321 0111112356788999999999998889999999999999888
Q ss_pred Hhhhhhhc----cCCCE-EEEcCCCCcchHHHHHHHH-hC--CcEEEEeccCCCCCcChhHHHhhccCCceEEEEecccc
Q psy15216 1472 KGAAHFYK----KRGKH-IITVQTEHKSVLDSIRKLE-ND--GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNN 1543 (2602)
Q Consensus 1472 ~~l~~~~~----~~gd~-Vlv~~~~~~s~~~~~~~~~-~~--G~~v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n 1543 (2602)
.++.. + ++||+ |+++.+.|+++...+..+. .. |++++.++. +++|++++++++++|++++++|
T Consensus 106 ~~~~~--~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~-------~~~l~~~i~~~~~~v~~~~~~n 176 (416)
T 1qz9_A 106 SAALR--VQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLRLVDS-------PEELPQAIDQDTAVVMLTHVNY 176 (416)
T ss_dssp HHHHH--HHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEEEESS-------GGGHHHHCSTTEEEEEEESBCT
T ss_pred Hhhcc--cccccCCCCcEEEEcCCCCCchHHHHHHHHHHhcCCceEEEeCc-------HHHHHHHhCCCceEEEEecccc
Confidence 87641 3 68886 6666779998877765443 33 889999875 7899999999999999999999
Q ss_pred ccccccChHHHHHHhhhcCCEEEEecccccCcccccCCCCCccEEEEccccc-cCCCce-EEEEEecCCCCccccccccC
Q psy15216 1544 EIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKI-YGPKGI-GALYIRRNPRTRIEAQIHGG 1621 (2602)
Q Consensus 1544 ~tG~~~~l~~I~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K~-~gp~G~-G~l~~~~~~~~~l~~~~~g~ 1621 (2602)
|||.+.|+++|.++|++||+++|+|++|+.|..++++..+++|++++|+||+ +++.|+ |++++++++++.+.+...|+
T Consensus 177 ptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~~K~l~~g~~~~g~l~~~~~~~~~l~~~~~g~ 256 (416)
T 1qz9_A 177 KTGYMHDMQALTALSHECGALAIWDLAHSAGAVPVDLHQAGADYAIGCTYKYLNGGPGSQAFVWVSPQLCDLVPQPLSGW 256 (416)
T ss_dssp TTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCCHHHHTCSEEEECSSSTTCCCTTCCCEEEECTTTTTTSCCSCCCG
T ss_pred CcccccCHHHHHHHHHHcCCEEEEEccccccCcCCChhhcCCCEEEecCcccCCCCCCCeEEEEECHHHHhccCCCcccc
Confidence 9999999999999999999999999999998877666556789999999994 556666 99999999887777654442
Q ss_pred Cc----------------cccCCCCCcchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcCC--cEEEeCCC
Q psy15216 1622 GH----------------EYGLRSGTLATHQIVGMGEAFRLAR-IEMKEELKRILFLQKRLYNGLMESIE--EIYINGDM 1682 (2602)
Q Consensus 1622 ~~----------------~~~~~~gt~~~~~~~al~~aL~~~~-~~~~~~~~~~~~l~~~l~~~L~~~~~--gl~i~~~~ 1682 (2602)
.. ..++..++++...++++.++++... .++++..+++.++++++.+.|.+..+ ++.+..+.
T Consensus 257 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~ 336 (416)
T 1qz9_A 257 FGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQRCAAHELTLVTPR 336 (416)
T ss_dssp GGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHTTSCCEECSCS
T ss_pred CccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhccCCCeEEeCCC
Confidence 11 1245677899999999988998654 46788999999999999999987335 78776543
Q ss_pred CC-CCCceEEEEEecCCcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecC-CCCCHHHHHHH
Q psy15216 1683 NN-RIPHNLNISFNFIEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIG-RFTTEKEIDFT 1758 (2602)
Q Consensus 1683 ~~-~~~~~~~~~~~~~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~-~~~t~edid~l 1758 (2602)
.. ....+ +++...+..++...| +||.+... ..+++|++++ .++|.+|++++
T Consensus 337 ~~~~~~~~--~~~~~~~~~~l~~~l~~~gi~~~~~-----------------------~~~~lRis~~~~~~t~~~i~~~ 391 (416)
T 1qz9_A 337 EHAKRGSH--VSFEHPEGYAVIQALIDRGVIGDYR-----------------------EPRIMRFGFTPLYTTFTEVWDA 391 (416)
T ss_dssp SGGGBCSE--EEEECTTHHHHHHHHHTTTEECEEE-----------------------TTTEEEEECCTTTCCHHHHHHH
T ss_pred CHHHcCCE--EEEecCCHHHHHHHHHhCCcEeccC-----------------------CCCeEEEeCcccCCCHHHHHHH
Confidence 21 11233 344333456666666 68875311 1278999998 48999999999
Q ss_pred HHHHHHh
Q psy15216 1759 IKLLKMK 1765 (2602)
Q Consensus 1759 i~~L~~~ 1765 (2602)
+++|++.
T Consensus 392 ~~~l~~~ 398 (416)
T 1qz9_A 392 VQILGEI 398 (416)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999974
|
| >1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.94 E-value=2.3e-25 Score=287.98 Aligned_cols=327 Identities=13% Similarity=0.139 Sum_probs=249.2
Q ss_pred cCCCCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHH-HHHHHHHHHHHHHhCCC--CCcEEEeCCHHHHHHHHHHhhh
Q psy15216 1399 KDATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAE-KAIEKARNEVAQLIYAD--PREIIWTSGATESNNLAIKGAA 1475 (2602)
Q Consensus 1399 ~~~~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~-~~~~~lr~~ia~~~g~~--~~~iv~t~gaT~al~~al~~l~ 1475 (2602)
+.+....++.+.+++.+.+ + + .. .... ....++|+++++++|.+ ++++++|+|+|+|++.++.++.
T Consensus 9 ~~gp~~~~~~v~~a~~~~~----~--~----~~-~~~~~~~~~~l~~~la~~~g~~~~~~~v~~~~g~t~a~~~~~~~~~ 77 (366)
T 1m32_A 9 TPGPLTTSRTVKEAMLFDS----C--T----WD-DDYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSAL 77 (366)
T ss_dssp SSSSCCCCHHHHHTTCCCC----C--T----TS-HHHHTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHSC
T ss_pred cCCCcCCCHHHHHHHhhhh----c--C----CC-HHHHHHHHHHHHHHHHHHhCCCCcCcEEEEecChHHHHHHHHHHhc
Confidence 3334456778888776532 1 1 11 1222 56789999999999942 2369999999999999999987
Q ss_pred hhhccCCCEEEEcC-CCCcc-hHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccC--CceEEEEeccccccccccCh
Q psy15216 1476 HFYKKRGKHIITVQ-TEHKS-VLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS--DTILVSVMLVNNEIGVIQPI 1551 (2602)
Q Consensus 1476 ~~~~~~gd~Vlv~~-~~~~s-~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~--~t~lv~l~~~~n~tG~~~~l 1551 (2602)
++||+|++++ +.|++ +..... ..|++++.++.++++.+|+++|++++++ ++++|++++++||||.++|+
T Consensus 78 ----~~gd~vi~~~~~~~~~~~~~~~~---~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l 150 (366)
T 1m32_A 78 ----GPQDKVLIVSNGAYGARMVEMAG---LMGIAHHAYDCGEVARPDVQAIDAILNADPTISHIAMVHSETTTGMLNPI 150 (366)
T ss_dssp ----CTTCCEEEEESSHHHHHHHHHHH---HHTCCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECCH
T ss_pred ----CCCCeEEEEeCCCccHHHHHHHH---HhCCceEEEeCCCCCCCCHHHHHHHHhcCCCeEEEEEecccCCcceecCH
Confidence 7899887765 66765 323333 3489999999988888999999999975 58899999999999999999
Q ss_pred HHHHHHhhhcCCEEEEecccccCcccccCCCCCccEEEEcccc-ccCCCceEEEEEecCCCCccccccccCCc-------
Q psy15216 1552 LEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGH------- 1623 (2602)
Q Consensus 1552 ~~I~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K-~~gp~G~G~l~~~~~~~~~l~~~~~g~~~------- 1623 (2602)
++|.++|++||+++|+|++|+.+..++++..+++|++++|+|| ++||.|+|++++++++++.+.+...+...
T Consensus 151 ~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~di~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (366)
T 1m32_A 151 DEVGALAHRYGKTYIVDAMSSFGGIPMDIAALHIDYLISSANKCIQGVPGFAFVIAREQKLAACKGHSRSLSLDLYAQWR 230 (366)
T ss_dssp HHHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCSSEEEEEEEHHHHTTCTTCCSCSTTCHHHHHH
T ss_pred HHHHHHHHHcCCEEEEECCccccCcCccccccCccEEEecCcccccCCCceEEEEECHHHHHhhcCCCCCccccHHHHHh
Confidence 9999999999999999999999888777777789999999999 66898999999998876666542111100
Q ss_pred ----cccCCCCCcchhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEe--
Q psy15216 1624 ----EYGLRSGTLATHQIVGMGEAFRLARIE--MKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN-- 1695 (2602)
Q Consensus 1624 ----~~~~~~gt~~~~~~~al~~aL~~~~~~--~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~-- 1695 (2602)
......++++...++++.++++..... +++..++++++++++.+.|.+ . ++.+..+.....+....+.++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~-~-~~~~~~~~~~~~~~~~~~~~~~~ 308 (366)
T 1m32_A 231 CMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRA-L-GFNTLLDDELHSPIITAFYSPED 308 (366)
T ss_dssp HHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH-T-TCCBSSCGGGBCSSEEEEECCCC
T ss_pred hhcccCCCCCCCCCHHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHHHHH-C-CCeeccCchhcCceEEEEEcCcc
Confidence 002224678888888888899865443 788999999999999999988 4 666554321223445555555
Q ss_pred -cCCcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1696 -FIEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1696 -~~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
..+..++...| +||.+++|..|. .+++|++++.++|.+|+++++++|++.
T Consensus 309 ~~~~~~~~~~~l~~~gi~v~~~~~~~--------------------~~~iRi~~~~~~~~~~i~~~~~~l~~~ 361 (366)
T 1m32_A 309 PQYRFSEFYRRLKEQGFVIYPGKVSQ--------------------SDCFRIGNIGEVYAADITALLTAIRTA 361 (366)
T ss_dssp TTCCHHHHHHHHHHTTEECEECCCSS--------------------SCEEEEECCSSCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHCCEEEECCcCCC--------------------CCEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 34556676666 799999887652 278999999999999999999999873
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.5e-25 Score=286.23 Aligned_cols=304 Identities=15% Similarity=0.099 Sum_probs=244.2
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCC
Q psy15216 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK 87 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd 87 (2602)
++|+.+++++.+.+...+.+|... ..++|+++++++|+++++|++|+|+++|+++++.++. ++||
T Consensus 43 ~~~~~v~~a~~~~~~~~~~y~~~~-----------~~~lr~~la~~~~~~~~~v~~~~g~~~a~~~~~~~l~----~~gd 107 (365)
T 3get_A 43 GTPPKAIECLRQNANKAHLYPDDS-----------MIELKSTLAQKYKVQNENIIIGAGSDQVIEFAIHSKL----NSKN 107 (365)
T ss_dssp CSCHHHHHHHHHHGGGTTSCCCTT-----------CHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHC----CTTC
T ss_pred CCCHHHHHHHHHHHHhhccCCCCC-----------hHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHHh----CCCC
Confidence 678999999999987655555431 1478999999999988999999999999999999987 8999
Q ss_pred EEEEcCCCCcccHHHHHHHHhCCcEEEEecc-CCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHH--h
Q psy15216 88 HIITVQTEHKSVLDSIRKLENDGFRVTYLKP-KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCR--S 164 (2602)
Q Consensus 88 ~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~-~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~--~ 164 (2602)
+|+++.+.|+++...+... |++++.+++ ++++ +|++++++++++++++|++++|+||||.++|++++.++++ +
T Consensus 108 ~vl~~~~~~~~~~~~~~~~---g~~~~~v~~~~~~~-~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~ 183 (365)
T 3get_A 108 AFLQAGVTFAMYEIYAKQC---GAKCYKTQSITHNL-DEFKKLYETHKDEIKLIFLCLPNNPLGECLDASEATEFIKGVN 183 (365)
T ss_dssp EEEECSSCCTHHHHHHHHH---TCEEEECSSSSCCH-HHHHHHHHHTTTTEEEEEEESSCTTTCCCCCHHHHHHHHHTSC
T ss_pred EEEEeCCChHHHHHHHHHc---CCEEEEEecCCCCC-CCHHHHHHHhCCCCCEEEEcCCCCCCCCCcCHHHHHHHHHhCC
Confidence 9999999999988777766 999999998 6678 9999999999999999999999999999999999988888 6
Q ss_pred cCCEEEEeccccccc------ccccC----CCCCccEEEeccccccCCCC--cEEEEEecCCCCcccceecCCCcccccc
Q psy15216 165 KGVIFHCDAAQAVGK------IDINI----QNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLR 232 (2602)
Q Consensus 165 ~g~~livD~a~a~g~------~~~dl----~~~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~ 232 (2602)
+|+++|+|++|+... .+.+. ...+.++++.|+||.+|++| +||+++++++++.+.....
T Consensus 184 ~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~--------- 254 (365)
T 3get_A 184 EDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLGGLRIGYGIANANIISAFYKLRA--------- 254 (365)
T ss_dssp TTSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTTSCTTTCCEEEEECHHHHHHHHHHSC---------
T ss_pred CCcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEEEeecchHhcCcchheEEEEcCHHHHHHHHHhcC---------
Confidence 799999999997322 22221 12345688999999888777 7999998877766654331
Q ss_pred ccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcccChhHHHHHh--
Q psy15216 233 SGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI-- 310 (2602)
Q Consensus 233 ~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L-- 310 (2602)
.++++.+...++.++++. ..++++..+++.++++++.+.|.+ . ++.+..+.. ..+.+.++..+..++...|
T Consensus 255 ~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~l~~~l~~-~-g~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~ 327 (365)
T 3get_A 255 PFNVSNLALKAAVAAMDD-DEFTEKTLENNFSQMELYKEFAKK-H-NIKIIDSYT----NFITYFFDEKNSTDLSEKLLK 327 (365)
T ss_dssp TTCSCHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHHHHHHH-T-TCEECCCSS----SEEEEECSSSCHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHh-C-CCEECCCCC----eEEEEECCCCCHHHHHHHHHH
Confidence 235777777777788873 256788899999999999999988 3 777764322 2344445443666777777
Q ss_pred CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 311 KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 311 ~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
+||.+++|..|. . +++|++++ +++|+++++++|++.
T Consensus 328 ~gi~v~~g~~~~-~-------------------~~iRis~~---~~~~i~~l~~~l~~~ 363 (365)
T 3get_A 328 KGIIIRNLKSYG-L-------------------NAIRITIG---TSYENEKFFTEFDKI 363 (365)
T ss_dssp TTEECEECGGGT-C-------------------SEEEEECC---CHHHHHHHHHHHHHH
T ss_pred CCEEEEECccCC-C-------------------CEEEEEcC---CHHHHHHHHHHHHHH
Confidence 799999887663 2 79999998 899999999999863
|
| >3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-24 Score=285.24 Aligned_cols=324 Identities=17% Similarity=0.152 Sum_probs=248.4
Q ss_pred CCCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccc----
Q psy15216 6 TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHF---- 81 (2602)
Q Consensus 6 ~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~---- 81 (2602)
.+++++.+.+++.+++...+.++.. ........+++++++++++|+++++|++++|+|+|+.+++.++...
T Consensus 39 ~~~~~~~v~~a~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~la~~~~~~~~~i~~~~ggt~a~~~~~~~~~~~~~~~ 113 (397)
T 3f9t_A 39 CSNVLPITRKIVDIFLETNLGDPGL-----FKGTKLLEEKAVALLGSLLNNKDAYGHIVSGGTEANLMALRCIKNIWREK 113 (397)
T ss_dssp CCCCCTHHHHHHHHHTTCCTTSGGG-----BHHHHHHHHHHHHHHHHHTTCTTCEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHhhcCCCccc-----ChhHHHHHHHHHHHHHHHhCCCCCCEEEecCcHHHHHHHHHHHHHHHHhh
Confidence 4567788999999988654433321 1245677889999999999999899999999999999999998721
Q ss_pred -----cccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccC-CceEEEEecccCcccccccH
Q psy15216 82 -----YKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS-DTILVSVMLVNNEIGVIQPI 155 (2602)
Q Consensus 82 -----~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~-~tklv~i~~~~npTG~~~~l 155 (2602)
...+||+|+++.++|+++...+... |++++.++.++++.+|+++|++++++ +++++++++|+||||.+.|+
T Consensus 114 ~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~---g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l 190 (397)
T 3f9t_A 114 RRKGLSKNEHPKIIVPITAHFSFEKGREMM---DLEYIYAPIKEDYTIDEKFVKDAVEDYDVDGIIGIAGTTELGTIDNI 190 (397)
T ss_dssp HHTTCCCCSSCEEEEETTCCTHHHHHHHHH---TCEEEEECBCTTSSBCHHHHHHHHHHSCCCEEEEEBSCTTTCCBCCH
T ss_pred hhhcccCCCCeEEEECCcchhHHHHHHHHc---CceeEEEeeCCCCcCCHHHHHHHHhhcCCeEEEEECCCCCCCCCCCH
Confidence 0124999999999999988888777 99999999998899999999999988 99999999999999999999
Q ss_pred HHHHHHHHhcCCEEEEecccccccc--------------cccCCCCCccEEEecccccc-CCCCcEEEEEecCC-CCccc
Q psy15216 156 LEIGELCRSKGVIFHCDAAQAVGKI--------------DINIQNYKVDLMSFSAHKIY-GPKGIGALYIRRNP-RTRIE 219 (2602)
Q Consensus 156 ~~I~~la~~~g~~livD~a~a~g~~--------------~~dl~~~~~D~~~~S~~K~~-Gp~G~G~l~~~~~~-~~~l~ 219 (2602)
++|.++|++||+++|+|++|+.+.. ++++.. ++|++++|+||++ ++.++|+++++++. .+.+.
T Consensus 191 ~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~K~~~~~~~~g~~~~~~~~~~~~~~ 269 (397)
T 3f9t_A 191 EELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSL-GVDSITIDPHKMGHCPIPSGGILFKDIGYKRYLD 269 (397)
T ss_dssp HHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGGG-TCSEEECCTTTTTCCCSSCEEEEESSGGGGGGTC
T ss_pred HHHHHHHHHhCCeEEEEccccchhhhhcccccccccccccccccc-cCCeEEEccccccCCCCCceEEEEeCHHHHHhhc
Confidence 9999999999999999999986543 344444 7899999999965 56679999987653 33332
Q ss_pred ---ceecCCCccccccccCcchhHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEE
Q psy15216 220 ---AQIHGGGHEYGLRSGTLATHQIVGMGEAFRL-ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLN 295 (2602)
Q Consensus 220 ---~~~~g~~~~~~~~~gt~~~~~~~al~~al~~-~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~ 295 (2602)
+...++. .....++.+.....++.+++.. ...++++..++..++++++.+.|.+ . ++.+..++. ..+
T Consensus 270 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~---~~~-- 340 (397)
T 3f9t_A 270 VDAPYLTETR--QATILGTRVGFGGACTYAVLRYLGREGQRKIVNECMENTLYLYKKLKE-N-NFKPVIEPI---LNI-- 340 (397)
T ss_dssp EECTTSSSSE--ECSSCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-T-TCCBSSCCS---SSE--
T ss_pred cCCccccCCC--ccccccccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-C-CCEEEcCCC---ccE--
Confidence 2221111 1122345555556666666663 3456788899999999999999988 4 766554422 223
Q ss_pred EEEcccChhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 296 ISFNFIEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 296 ~~~~~~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
+++...+..++.+.| +||.++++.. ++++||+++.+++++|+++++++|++.
T Consensus 341 ~~~~~~~~~~~~~~l~~~gi~v~~~~~----------------------~~~~Ri~~~~~~~~e~i~~~~~~l~~~ 394 (397)
T 3f9t_A 341 VAIEDEDYKEVCKKLRDRGIYVSVCNC----------------------VKALRIVVMPHIKREHIDNFIEILNSI 394 (397)
T ss_dssp EEEECTTHHHHHHHHHHTTCBCEECSS----------------------SSEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred EEEEeCCHHHHHHHHHhCCeEEeccCC----------------------CCEEEEEEcCCCCHHHHHHHHHHHHHh
Confidence 334433456666666 7888876542 278999999999999999999999863
|
| >1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-25 Score=288.70 Aligned_cols=330 Identities=12% Similarity=0.105 Sum_probs=247.9
Q ss_pred ccCCCCCCCHHHHHHHHHHHhhccCCCCCccchh---HHHHHHHHHHHHHHHHHHhCCC-CCcEEEeCCH-HHHHHHHHH
Q psy15216 1398 FKDATTPIDPRVVDKMIPYLRVQFGNPASRNHIY---GWTAEKAIEKARNEVAQLIYAD-PREIIWTSGA-TESNNLAIK 1472 (2602)
Q Consensus 1398 L~~~~~~~~~~v~eal~~~l~~~~~np~~~~~~~---~~~~~~~~~~lr~~ia~~~g~~-~~~iv~t~ga-T~al~~al~ 1472 (2602)
++.+..+.|+.+++++.+.++.. .+++.+.|.. .+......+++++++++++|++ +++|++|+|+ |+|+..++.
T Consensus 7 ~~~g~~~~p~~v~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~v~~~~g~gt~al~~~~~ 85 (360)
T 1w23_A 7 FNAGPSALPKPALERAQKELLNF-NDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQFTMLPM 85 (360)
T ss_dssp CCSSSCCCCHHHHHHHHHTSSSS-TTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHH
T ss_pred ecCCCcCCCHHHHHHHHHHhhhh-ccccccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEECCcchHHHHHHHH
Confidence 34555688899999999988653 4555433322 4566678899999999999996 4689999999 999999999
Q ss_pred hhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCC-CCCcChhHHHh-hccCCceEEEEeccccccccccC
Q psy15216 1473 GAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NGLITLSQLEE-KICSDTILVSVMLVNNEIGVIQP 1550 (2602)
Q Consensus 1473 ~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~-~~~id~d~l~~-~i~~~t~lv~l~~~~n~tG~~~~ 1550 (2602)
++... -++||+|+++.++|++. ..+...| +++.++.++ ++.+|++++++ +++++|++|+++|++||||.++|
T Consensus 86 ~l~~~-~~~g~~vi~~~~~~~~~----~~~~~~g-~~~~v~~~~~~~~~d~~~l~~~~i~~~~k~v~~~~~~nptG~~~~ 159 (360)
T 1w23_A 86 NLLTK-GTIGNYVLTGSWSEKAL----KEAKLLG-ETHIAASTKANSYQSIPDFSEFQLNENDAYLHITSNNTIYGTQYQ 159 (360)
T ss_dssp HHCCT-TCEEEEEECSHHHHHHH----HHHHTTS-EEEEEEECGGGTSCSCCCGGGCCCCTTEEEEEEESEETTTTEECS
T ss_pred HhcCC-CCcccEEEecchhHHHH----HHHHHhC-CeEEeecccccCcCCccchHhhccCCCCCEEEEeCCCCCcceecc
Confidence 88711 03477888877666652 2234559 999999875 66789999999 99999999999999999999988
Q ss_pred hHHHHHHhhhcCCEEEEecccccCcccccCCCCCccEEEEccccccCCCceEEEEEecCCCCccccccccCCcc------
Q psy15216 1551 ILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHE------ 1624 (2602)
Q Consensus 1551 l~~I~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K~~gp~G~G~l~~~~~~~~~l~~~~~g~~~~------ 1624 (2602)
+++++||+++|+|++|+.+..++++..+ |++++|+||++||.|+|++++++++++.+.+.. ++...
T Consensus 160 -----~i~~~~~~~li~D~a~~~~~~~~~~~~~--di~~~s~sK~~~~~G~G~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 231 (360)
T 1w23_A 160 -----NFPEINHAPLIADMSSDILSRPLKVNQF--GMIYAGAQKNLGPSGVTVVIVKKDLLNTKVEQV-PTMLQYATHIK 231 (360)
T ss_dssp -----SCCCCCSSCEEEECTTTTTSSCCCGGGC--SEEEEETTTTTSCTTCEEEEEEHHHHCSCCTTC-CGGGCHHHHHH
T ss_pred -----cccccCCceEEEechhhcCCCCcCcccC--CEEEEEcccccCCCCcEEEEEcHHHHhhcccCC-cchhhhhhhhh
Confidence 3444899999999999998877766544 899999999889999999999988776665533 11110
Q ss_pred ccCCCCCcchhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhcCCcE-EEeCCCCCCCCceEEEEEecC-CcH
Q psy15216 1625 YGLRSGTLATHQIVGMGEAFRLARI--EMKEELKRILFLQKRLYNGLMESIEEI-YINGDMNNRIPHNLNISFNFI-EGE 1700 (2602)
Q Consensus 1625 ~~~~~gt~~~~~~~al~~aL~~~~~--~~~~~~~~~~~l~~~l~~~L~~~~~gl-~i~~~~~~~~~~~~~~~~~~~-~~~ 1700 (2602)
.++..++++...++++.++++.... +++++.++++++++++.+.|.+ ++++ ....++....+....+.++.. +..
T Consensus 232 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (360)
T 1w23_A 232 SDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDE-SNGFYVGHAEKGSRSLMNVTFNLRNEELNQ 310 (360)
T ss_dssp TTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHT-TTTSSEESSCGGGBCSSEEEEECSSHHHHH
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH-ccCcccccCCchhccCcEEEEEcCCCccHH
Confidence 2345678899999999899986554 5788999999999999999987 6654 433112212232334444321 234
Q ss_pred HHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1701 SLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1701 ~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
++...| +||.+++|..+ .+++|||++.+++.+++++++++|++
T Consensus 311 ~~~~~l~~~gi~~~~~~~~---------------------~~~iRis~~~~~~~~~i~~~~~~l~~ 355 (360)
T 1w23_A 311 QFLAKAKEQGFVGLNGHRS---------------------VGGCRASIYNAVPIDACIALRELMIQ 355 (360)
T ss_dssp HHHHHHHHTTEESCBCCTT---------------------TCSEEEECCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCeeeecCCCC---------------------CCeEEEEecCCCCHHHHHHHHHHHHH
Confidence 565555 79988765421 26899999999999999999999986
|
| >3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-24 Score=283.26 Aligned_cols=330 Identities=17% Similarity=0.154 Sum_probs=252.0
Q ss_pred eeccCCCCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhh
Q psy15216 1396 IVFKDATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAA 1475 (2602)
Q Consensus 1396 v~L~~~~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~ 1475 (2602)
.++.....+.++.+.+++.+.+...++++.. + ....+...++++++++++|++++++++|+|+|+|+..++.++.
T Consensus 33 ~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~--~---~~~~~~~~~l~~~la~~~~~~~~~i~~~~ggt~a~~~~~~~~~ 107 (397)
T 3f9t_A 33 NIFGSMCSNVLPITRKIVDIFLETNLGDPGL--F---KGTKLLEEKAVALLGSLLNNKDAYGHIVSGGTEANLMALRCIK 107 (397)
T ss_dssp CBCSCSCCCCCTHHHHHHHHHTTCCTTSGGG--B---HHHHHHHHHHHHHHHHHTTCTTCEEEEESCHHHHHHHHHHHHH
T ss_pred CeEEEecCCCcHHHHHHHHHHHhhcCCCccc--C---hhHHHHHHHHHHHHHHHhCCCCCCEEEecCcHHHHHHHHHHHH
Confidence 3455555677788999999988764444432 1 2456778899999999999998999999999999999999987
Q ss_pred hh---------hccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccC-CceEEEEecccccc
Q psy15216 1476 HF---------YKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS-DTILVSVMLVNNEI 1545 (2602)
Q Consensus 1476 ~~---------~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~-~t~lv~l~~~~n~t 1545 (2602)
.. ...+||+|+++.++|+++...+... |++++.++.++++.+|+++|++++++ ++++|++++|+|||
T Consensus 108 ~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~---g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~npt 184 (397)
T 3f9t_A 108 NIWREKRRKGLSKNEHPKIIVPITAHFSFEKGREMM---DLEYIYAPIKEDYTIDEKFVKDAVEDYDVDGIIGIAGTTEL 184 (397)
T ss_dssp HHHHHHHHTTCCCCSSCEEEEETTCCTHHHHHHHHH---TCEEEEECBCTTSSBCHHHHHHHHHHSCCCEEEEEBSCTTT
T ss_pred HHHHhhhhhcccCCCCeEEEECCcchhHHHHHHHHc---CceeEEEeeCCCCcCCHHHHHHHHhhcCCeEEEEECCCCCC
Confidence 22 0124999999999999988887777 99999999998899999999999998 99999999999999
Q ss_pred ccccChHHHHHHhhhcCCEEEEecccccCcc--------------cccCCCCCccEEEEcccccc-CCCceEEEEEecCC
Q psy15216 1546 GVIQPILEIGELCRSKGVIFHCDAAQAVGKI--------------DINIQNYKVDLMSFSAHKIY-GPKGIGALYIRRNP 1610 (2602)
Q Consensus 1546 G~~~~l~~I~~ia~~~gi~vivD~a~~~g~~--------------~~~l~~~~~D~~v~S~~K~~-gp~G~G~l~~~~~~ 1610 (2602)
|.+.|+++|.++|++||+++|+|++|+.+.. ++++.. ++|++++|+||++ ++.++|+++++++.
T Consensus 185 G~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~K~~~~~~~~g~~~~~~~~ 263 (397)
T 3f9t_A 185 GTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSL-GVDSITIDPHKMGHCPIPSGGILFKDIG 263 (397)
T ss_dssp CCBCCHHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGGG-TCSEEECCTTTTTCCCSSCEEEEESSGG
T ss_pred CCCCCHHHHHHHHHHhCCeEEEEccccchhhhhcccccccccccccccccc-cCCeEEEccccccCCCCCceEEEEeCHH
Confidence 9999999999999999999999999986543 334444 7899999999955 56679999997653
Q ss_pred -CCcc---ccccccCCccccCCCCCcchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCC
Q psy15216 1611 -RTRI---EAQIHGGGHEYGLRSGTLATHQIVGMGEAFRL-ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNR 1685 (2602)
Q Consensus 1611 -~~~l---~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~-~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~ 1685 (2602)
.+.+ .+...++. .....++.+.....++.+++.. ...++++..++..++++++.+.|.+ . ++.+..++
T Consensus 264 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~--- 336 (397)
T 3f9t_A 264 YKRYLDVDAPYLTETR--QATILGTRVGFGGACTYAVLRYLGREGQRKIVNECMENTLYLYKKLKE-N-NFKPVIEP--- 336 (397)
T ss_dssp GGGGTCEECTTSSSSE--ECSSCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-T-TCCBSSCC---
T ss_pred HHHhhccCCccccCCC--ccccccccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-C-CCEEEcCC---
Confidence 3333 22221111 1122355555566666666764 3456788889999999999999988 4 66654432
Q ss_pred CCceEEEEEecCCcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHH
Q psy15216 1686 IPHNLNISFNFIEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK 1763 (2602)
Q Consensus 1686 ~~~~~~~~~~~~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~ 1763 (2602)
....+.+...+..++...| +||.++++.. .+++|++++.++|.+++++++++|+
T Consensus 337 --~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~----------------------~~~~Ri~~~~~~~~e~i~~~~~~l~ 392 (397)
T 3f9t_A 337 --ILNIVAIEDEDYKEVCKKLRDRGIYVSVCNC----------------------VKALRIVVMPHIKREHIDNFIEILN 392 (397)
T ss_dssp --SSSEEEEECTTHHHHHHHHHHTTCBCEECSS----------------------SSEEEEECCTTCCHHHHHHHHHHHH
T ss_pred --CccEEEEEeCCHHHHHHHHHhCCeEEeccCC----------------------CCEEEEEEcCCCCHHHHHHHHHHHH
Confidence 2223444444456666666 7888876542 1789999999999999999999998
Q ss_pred Hh
Q psy15216 1764 MK 1765 (2602)
Q Consensus 1764 ~~ 1765 (2602)
+.
T Consensus 393 ~~ 394 (397)
T 3f9t_A 393 SI 394 (397)
T ss_dssp HH
T ss_pred Hh
Confidence 73
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.93 E-value=8.3e-25 Score=282.90 Aligned_cols=306 Identities=11% Similarity=0.103 Sum_probs=243.3
Q ss_pred CCCHHHHHHHHHHHhh--hcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCC-CCCcEEEeCCHHHHHHHHHHhccccccc
Q psy15216 8 PIDPRVVDKMIPYLRV--QFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-DPREIIWTSGATESNNLAIKGAAHFYKK 84 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~--~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~-~~~~Iv~t~g~T~al~~~~~~l~~~~~~ 84 (2602)
++|+.+.+++.+.+.. ...++.. ...++|+++++++|+ ++++|++|+|+|+|+++++.++. +
T Consensus 43 ~~~~~v~~a~~~~~~~~~~~~y~~~-----------~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~----~ 107 (367)
T 3euc_A 43 RLPPALRSELAARLGEVALNRYPVP-----------SSEALRAKLKEVMQVPAGMEVLLGNGSDEIISMLALAAA----R 107 (367)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCSCCC-----------CHHHHHHHHHHHHTCCTTCEEEEEEHHHHHHHHHHHHTC----C
T ss_pred CCCHHHHHHHHHHhhhhhhhcCCCC-----------cHHHHHHHHHHHhCCCCcceEEEcCCHHHHHHHHHHHHc----C
Confidence 6789999999998874 3333332 257889999999999 77899999999999999999987 8
Q ss_pred CCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccC-CceEEEEecccCccccccc---HHHHHH
Q psy15216 85 RGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS-DTILVSVMLVNNEIGVIQP---ILEIGE 160 (2602)
Q Consensus 85 ~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~-~tklv~i~~~~npTG~~~~---l~~I~~ 160 (2602)
+||+|+++.+.|+++...+.. .|++++.++.++++.+|+++|++++++ ++++|++++|+||||.++| +++|++
T Consensus 108 ~gd~Vl~~~~~~~~~~~~~~~---~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~i~~ 184 (367)
T 3euc_A 108 PGAKVMAPVPGFVMYAMSAQF---AGLEFVGVPLRADFTLDRGAMLAAMAEHQPAIVYLAYPNNPTGNLFDAADMEAIVR 184 (367)
T ss_dssp TTCEEEEEESCSCCSCHHHHT---TTCEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred CCCEEEEcCCCHHHHHHHHHH---cCCeEEEecCCCCCCCCHHHHHHHhhccCCCEEEEcCCCCCCCCCCCHHHHHHHHH
Confidence 999999999999998776654 499999999988889999999999988 8999999999999999986 666777
Q ss_pred HHHhc--CCEEEEecccccccc---cccCCCCCccEEEeccccccCCCC--cEEEEEecCCCCcccceecCCCccccccc
Q psy15216 161 LCRSK--GVIFHCDAAQAVGKI---DINIQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRS 233 (2602)
Q Consensus 161 la~~~--g~~livD~a~a~g~~---~~dl~~~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~ 233 (2602)
+|++| |+++|+|++|+.... ...+...+.++++.|+||. +++| +||+++++++++.+.+.. ..
T Consensus 185 ~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~-~~~G~r~G~~~~~~~~~~~~~~~~---------~~ 254 (367)
T 3euc_A 185 AAQGSVCRSLVVVDEAYQPFAQESWMSRLTDFGNLLVMRTVSKL-GLAGIRLGYVAGDPQWLEQLDKVR---------PP 254 (367)
T ss_dssp HTBTTSCBCEEEEECTTCCSSSCCSGGGGGTCTTEEEEEECCCT-TSCSCCEEEEEECHHHHHHHGGGC---------CS
T ss_pred hhhhcCCCcEEEEeCcchhhcccchHHHHhhCCCEEEEecchhh-cccccCceeeeeCHHHHHHHHHhC---------CC
Confidence 79999 999999999874221 1123334556889999998 7666 799999887766665433 23
Q ss_pred cCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcccChhHHHHHh--C
Q psy15216 234 GTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI--K 311 (2602)
Q Consensus 234 gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~ 311 (2602)
++++.....++.++++. ..++++..++..++++++.+.|.+ +|++.+..+. ...+.+.++ +..++...| +
T Consensus 255 ~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~l~~~l~~-~~g~~~~~~~----~~~~~~~~~--~~~~l~~~l~~~ 326 (367)
T 3euc_A 255 YNVNVLTEATALFALEH-VAVLDEQAAQLRAERSRVAEGMAA-HGGVTVFPSA----ANFLLARVP--DAAQTFDRLLAR 326 (367)
T ss_dssp SCCCHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHT-STTCEECCCS----SSEEEEECS--CHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHh-CCCcEECCCC----CeEEEEECC--CHHHHHHHHHHC
Confidence 45777777777788875 456788999999999999999987 6888865332 233444444 667777777 7
Q ss_pred CeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 312 DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 312 gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
||.++++..|.+. ..+++||+++ +++|+++++++|++.
T Consensus 327 gi~v~~~~~~~~~-----------------~~~~iRis~~---~~~~i~~~~~~l~~~ 364 (367)
T 3euc_A 327 KVLIKNVSKMHPL-----------------LANCLRVTVS---TPEENAQFLEAFAAS 364 (367)
T ss_dssp TEECEECGGGCGG-----------------GTTEEEEECC---CHHHHHHHHHHHHHH
T ss_pred CeEEEECCccCCC-----------------CCCEEEEecC---CHHHHHHHHHHHHHH
Confidence 9999988876431 2489999987 899999999999863
|
| >2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.93 E-value=5e-25 Score=287.03 Aligned_cols=337 Identities=12% Similarity=0.113 Sum_probs=248.8
Q ss_pred eeeeccCCCCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCC----CCCcEEEeCCHHHHHHH
Q psy15216 1394 TNIVFKDATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA----DPREIIWTSGATESNNL 1469 (2602)
Q Consensus 1394 ~~v~L~~~~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~----~~~~iv~t~gaT~al~~ 1469 (2602)
....+.......++.+.+++.+.... + ..........+++++++++++. +++++++|+|+|+|+++
T Consensus 5 ~~~~~~p~p~~~~~~v~~a~~~~~~~-----~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~t~al~~ 74 (385)
T 2bkw_A 5 VDTLLIPGPIILSGAVQKALDVPSLG-----H-----TSPEFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDI 74 (385)
T ss_dssp CCEECSSSSCCCCHHHHHTTSCCCCC-----T-----TSHHHHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHH
T ss_pred cceeecCCCcCchHHHHHHHhccccc-----c-----CCHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEcCchHHHHHH
Confidence 33344445566777777777554321 1 1222234567788899998875 35789999999999999
Q ss_pred HHHhhhhhhccCCCEEEEcCCC-CcchHHHHHHHHhCCcEEEEecc-CCCCCcChhHHHhhccC-CceEEEEeccccccc
Q psy15216 1470 AIKGAAHFYKKRGKHIITVQTE-HKSVLDSIRKLENDGFRVTYLKP-KNNGLITLSQLEEKICS-DTILVSVMLVNNEIG 1546 (2602)
Q Consensus 1470 al~~l~~~~~~~gd~Vlv~~~~-~~s~~~~~~~~~~~G~~v~~v~~-~~~~~id~d~l~~~i~~-~t~lv~l~~~~n~tG 1546 (2602)
++.++.. .+++||+|+++++. |+... ...+...|++++.++. +.++.+|+++|++++++ ++++|++++++||||
T Consensus 75 ~~~~~~~-~~~~gd~vlv~~~~~~~~~~--~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG 151 (385)
T 2bkw_A 75 FASNFIL-SKAPNKNVLVVSTGTFSDRF--ADCLRSYGAQVDVVRPLKIGESVPLELITEKLSQNSYGAVTVTHVDTSTA 151 (385)
T ss_dssp HHHHHSC-TTCSCCEEEEECSSHHHHHH--HHHHHHTTCEEEEECCSSTTSCCCHHHHHHHHHHSCCSEEEEESEETTTT
T ss_pred HHHHHhc-cCCCCCeEEEEcCCcchHHH--HHHHHHcCCceEEEecCCCCCCCCHHHHHHHHhcCCCCEEEEEccCCCcC
Confidence 9998741 12689999888543 33332 2334556999999998 77888999999999987 899999999999999
Q ss_pred cccChHHHHHHhhhc--CCEEEEecccccCcccccCCCCCccEEEEcccc-ccCCCceEEEEEecCCCC-cccc------
Q psy15216 1547 VIQPILEIGELCRSK--GVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRT-RIEA------ 1616 (2602)
Q Consensus 1547 ~~~~l~~I~~ia~~~--gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K-~~gp~G~G~l~~~~~~~~-~l~~------ 1616 (2602)
.++|+++|.++|++| |+++|+|++|+.|..++++..+++|++++|+|| ++||+|+|+++++++.++ .+.+
T Consensus 152 ~~~~l~~i~~~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~G~G~~~~~~~~~~~~l~~~~~~~~ 231 (385)
T 2bkw_A 152 VLSDLKAISQAIKQTSPETFFVVDAVCSIGCEEFEFDEWGVDFALTASQKAIGAPAGLSISLCSSRFMDYALNDSKNGHV 231 (385)
T ss_dssp EECCHHHHHHHHHHHCTTSEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCSCEEEEEECHHHHHHHTCHHHHCCC
T ss_pred eEcCHHHHHHHHHhhCCCCEEEEECccccCCccccccccCceEEEecCccccccCCcceEEEEcHHHHHHHHhhccCCCC
Confidence 999999999999999 999999999999888777777889999999999 778999999999887655 4421
Q ss_pred ccccCC------------ccccCCCCCcchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-hhcCCcEEEeCCC
Q psy15216 1617 QIHGGG------------HEYGLRSGTLATHQIVGMGEAFRLARI-EMKEELKRILFLQKRLYNGL-MESIEEIYINGDM 1682 (2602)
Q Consensus 1617 ~~~g~~------------~~~~~~~gt~~~~~~~al~~aL~~~~~-~~~~~~~~~~~l~~~l~~~L-~~~~~gl~i~~~~ 1682 (2602)
..+++. ...+...++++...+.++.++++.... ++++..++++++++++.+.| .+ + ++.+..+.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~-g~~~~~~~ 309 (385)
T 2bkw_A 232 HGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNG-L-QLTSVSRY 309 (385)
T ss_dssp SCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTT-T-CCEESSCS
T ss_pred CceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHh-c-CceecccC
Confidence 111100 001223468888899888889986554 47888999999999999999 77 5 77776432
Q ss_pred C-C-CCCceEEEEEecCCcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEe-cCC---CCCHHH
Q psy15216 1683 N-N-RIPHNLNISFNFIEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFT-IGR---FTTEKE 1754 (2602)
Q Consensus 1683 ~-~-~~~~~~~~~~~~~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls-~~~---~~t~ed 1754 (2602)
. . ..+....+.++. ..++...| +||.+++|..+.. ..+++|+| ++. .+|.+|
T Consensus 310 ~~~~~~~~~~~~~~~~--~~~~~~~l~~~gi~v~~g~~~~~------------------~~~~iRis~~~~~~~~~~~e~ 369 (385)
T 2bkw_A 310 PSNMSAHGLTAVYVAD--PPDVIAFLKSHGVVIAGGIHKDI------------------GPKYIRIGHMGVTACNKNLPY 369 (385)
T ss_dssp SSTTBCSSCEEEECSC--HHHHHHHHHHTTEECBCCCCTTT------------------GGGEEEECCCGGGTSSTTCTH
T ss_pred cccccCCceEEEecCC--HHHHHHHHHHCCeEEeCCCCccc------------------CCCEEEEEccccccccCCHHH
Confidence 1 1 234444555543 55666666 7999988765321 13789999 652 479999
Q ss_pred HHHHHHHHHHh
Q psy15216 1755 IDFTIKLLKMK 1765 (2602)
Q Consensus 1755 id~li~~L~~~ 1765 (2602)
+++++++|++.
T Consensus 370 i~~~~~~l~~~ 380 (385)
T 2bkw_A 370 MKNCFDLIKLA 380 (385)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999873
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} | Back alignment and structure |
|---|
Probab=99.93 E-value=6.8e-25 Score=282.23 Aligned_cols=304 Identities=14% Similarity=0.098 Sum_probs=240.7
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCC
Q psy15216 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK 87 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd 87 (2602)
++|+.+.+++.+.+...+.+| ....+++|+++++++|+++++|++|+|+++|+++++.++. ++||
T Consensus 29 ~~~~~v~~a~~~~~~~~~~y~-----------~~~~~~l~~~la~~~~~~~~~i~~~~g~~~a~~~~~~~l~----~~gd 93 (354)
T 3ly1_A 29 GMSPKAQAAARDAVVKANRYA-----------KNEILMLGNKLAAHHQVEAPSILLTAGSSEGIRAAIEAYA----SLEA 93 (354)
T ss_dssp CCCHHHHHHHHHTGGGTTSCC-----------HHHHHHHHHHHHHHTTSCGGGEEEESHHHHHHHHHHHHHC----CTTC
T ss_pred CCCHHHHHHHHHHHhhCcCCC-----------CCchHHHHHHHHHHhCCChHHEEEeCChHHHHHHHHHHHh----CCCC
Confidence 688999999998886533332 1356889999999999988999999999999999999987 7999
Q ss_pred EEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhcc--CCceEEEEecccCcccccccHHHHHHHHHh-
Q psy15216 88 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKIC--SDTILVSVMLVNNEIGVIQPILEIGELCRS- 164 (2602)
Q Consensus 88 ~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~--~~tklv~i~~~~npTG~~~~l~~I~~la~~- 164 (2602)
+|+++.+.|+++...++.. |++++.++.++++.+|+++|+++++ +++++|++++|+||||.++|.+++.++++.
T Consensus 94 ~vl~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~ 170 (354)
T 3ly1_A 94 QLVIPELTYGDGEHFAKIA---GMKVTKVKMLDNWAFDIEGLKAAVAAYSGPSIVYLVNPNNPTGTITPADVIEPWIASK 170 (354)
T ss_dssp EEEEESSSCTHHHHHHHHT---TCEEEEECCCTTSCCCHHHHHHHHHTCSSCEEEEEESSCTTTCCCCCHHHHHHHHHTC
T ss_pred eEEECCCCchHHHHHHHHc---CCEEEEecCCCCCCCCHHHHHHHhccCCCCCEEEEeCCCCCcCCCcCHHHHHHHHHhC
Confidence 9999999999987666554 9999999998889999999999998 899999999999999999999998888887
Q ss_pred -cCCEEEEecccccccccc---c----CCCC-CccEEEeccccccCCCC--cEEEEEecCCCCcccceecCCCccccccc
Q psy15216 165 -KGVIFHCDAAQAVGKIDI---N----IQNY-KVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRS 233 (2602)
Q Consensus 165 -~g~~livD~a~a~g~~~~---d----l~~~-~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~ 233 (2602)
||+++|+|++|+.....- . +... +.++++.|+||.+|++| +||+++++++++.+.... ..
T Consensus 171 ~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~---------~~ 241 (354)
T 3ly1_A 171 PANTMFIVDEAYAEFVNDPRFRSISPMITQGAENIILLKTFSKIHAMAGMRVGYAVAHPTVIALMGRYV---------AG 241 (354)
T ss_dssp CTTEEEEEECTTGGGCCCTTCCCSHHHHHTTCSSEEEEEESSSTTCCGGGCCEEEECCHHHHHHHGGGT---------TC
T ss_pred CCCeEEEEeccHHHhccccccCCHHHHhhhcCCCEEEEeeChhhccChhhhheeeecCHHHHHHHHHhc---------CC
Confidence 999999999997543211 1 1122 45689999999888776 799999887766665433 12
Q ss_pred cCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcccChhHHHHHh--C
Q psy15216 234 GTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI--K 311 (2602)
Q Consensus 234 gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~ 311 (2602)
++++.....++.++++.. .++++..+++.++++++.+.|.+ . ++.+..+. ..++.+.++. +..++...| +
T Consensus 242 ~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~l~~~l~~-~-~~~~~~~~----~~~~~~~~~~-~~~~~~~~l~~~ 313 (354)
T 3ly1_A 242 EKINFSGVDAALASMNDS-AFITYSKKSNDVSRQILLKALED-L-KLPYLPSE----GNFVFHQLVV-PLKDYQTHMADA 313 (354)
T ss_dssp SCCCHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHHHHHHH-H-TCCBCCCC----SSEEEEECSS-CHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHHHHHHHHH-C-CCeECCCC----ceEEEEECCC-CHHHHHHHHHHC
Confidence 577888888777787733 56788889999999999999987 3 66554321 2334444443 566777666 7
Q ss_pred CeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 312 DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 312 gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
||.++ |..+.. .+++||+++ +++|+++++++|++.
T Consensus 314 gi~v~-g~~~~~-------------------~~~iRis~~---~~~~i~~~~~~l~~~ 348 (354)
T 3ly1_A 314 GVLIG-RAFPPA-------------------DNWCRISLG---TPQEMQWVADTMREF 348 (354)
T ss_dssp TEECC-CCCTTC-------------------TTEEEEECC---CHHHHHHHHHHHHHH
T ss_pred CEEEe-ecCCCC-------------------CCEEEEEcC---CHHHHHHHHHHHHHH
Confidence 99988 654422 389999987 899999999999964
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-24 Score=276.13 Aligned_cols=306 Identities=16% Similarity=0.156 Sum_probs=235.4
Q ss_pred CCCCCCC-CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcc
Q psy15216 1 MDYSATT-PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAA 79 (2602)
Q Consensus 1 Ld~a~~~-~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~ 79 (2602)
|+.+.++ ++++.+.+++.+.+.....+|. ....++|+++++++|+++++|++|+|+++++++++.++
T Consensus 21 l~~n~~~~~~~~~v~~a~~~~~~~~~~y~~-----------~~~~~lr~~la~~~~~~~~~i~~t~G~~~~l~~~~~~~- 88 (337)
T 3p1t_A 21 LAFNENPEAVEPRVQAAIAAAAARINRYPF-----------DAEPRVMRKLAEHFSCPEDNLMLVRGIDECFDRISAEF- 88 (337)
T ss_dssp CSSCCCCSCCCHHHHHHHHHHGGGTTSCCT-----------THHHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHS-
T ss_pred eeCCCCCCCCCHHHHHHHHHhhhhhccCCC-----------CchHHHHHHHHHHhCcCHHHEEEeCCHHHHHHHHHHhc-
Confidence 4555544 7889999999998765444432 24678999999999998899999999999999999875
Q ss_pred cccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHH
Q psy15216 80 HFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIG 159 (2602)
Q Consensus 80 ~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~ 159 (2602)
+||+|+++.|.|+++...++ ..|++++.++.++++.+|+++++++ .+++++++++|+||||.++|++++.
T Consensus 89 -----~gd~vl~~~p~~~~~~~~~~---~~g~~~~~v~~~~~~~~d~~~l~~~--~~~~~v~i~~p~nptG~~~~~~~l~ 158 (337)
T 3p1t_A 89 -----SSMRFVTAWPGFDGYRARIA---VSGLRHFEIGLTDDLLLDPNDLAQV--SRDDCVVLANPSNPTGQALSAGELD 158 (337)
T ss_dssp -----TTSEEEEESSSCSHHHHHHT---TSCCEEEEECBCTTSSBCHHHHTTC--CTTEEEEEESSCTTTCCCCCHHHHH
T ss_pred -----CCCeEEEeCCCcHHHHHHHH---HcCCEEEEecCCCCCCCCHHHHHhh--cCCCEEEEeCCCCCCCCCCCHHHHH
Confidence 69999999999999766554 4599999999988889999999887 5789999999999999999999999
Q ss_pred HHHHhcCCEEEEeccccc--ccccccCCCCCccEEEeccccccCCCC--cEEEEEecCCCCcccceecCCCccccccccC
Q psy15216 160 ELCRSKGVIFHCDAAQAV--GKIDINIQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGT 235 (2602)
Q Consensus 160 ~la~~~g~~livD~a~a~--g~~~~dl~~~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt 235 (2602)
++|+++++ +++|++|+. +..+......+.++++.|+||.+|++| +||+++++++++.+.+.. ..++
T Consensus 159 ~l~~~~~~-~ivDea~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~~~l~~~~---------~~~~ 228 (337)
T 3p1t_A 159 QLRQRAGK-LLIDETYVDYSSFRARGLAYGENELVFRSFSKSYGLAGLRLGALFGPSELIAAMKRKQ---------WFCN 228 (337)
T ss_dssp HHHHHCSE-EEEECTTGGGSSCSSSCCCCBTTEEEEEESSSTTCCTTTCCEEEECCHHHHHHHHTTS---------CTTC
T ss_pred HHHHhCCc-EEEECCChhhccccccccccCCCEEEEeeCchhccCcchheEEEEeCHHHHHHHHhhc---------CCCC
Confidence 99999997 566999873 222222233356799999999888777 699999887766665332 2356
Q ss_pred cchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcccChhHHHHHh--CCe
Q psy15216 236 LATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDI 313 (2602)
Q Consensus 236 ~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI 313 (2602)
++.++..++.++++.. ..+++..++..++++++.+.|.+ . ++.+..+.. .++++...+...+...| +||
T Consensus 229 ~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~------~~~~~~~~~~~~~~~~l~~~gi 299 (337)
T 3p1t_A 229 VGTLDLHALEAALDND-RAREAHIAKTLAQRRRVADALRG-L-GYRVASSEA------NFVLVENAAGERTLRFLRERGI 299 (337)
T ss_dssp SCHHHHHHHHHHHTCH-HHHHHHHHHHHHHHHHHHHHHHH-T-TCCBCCCSS------SEEEEECTTTHHHHHHHHHTTE
T ss_pred CCHHHHHHHHHHhCCH-HHHHHHHHHHHHHHHHHHHHHHH-C-cCEECCCCC------eEEEEEcCCHHHHHHHHHHCCe
Confidence 7777777776777632 23566677778888899999987 3 665543322 23444444555565555 799
Q ss_pred EEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 314 AVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 314 ~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
.+++|..|..+ +++|||++ +++|+++++++|++.
T Consensus 300 ~v~~g~~~~~~-------------------~~iRis~~---~~~~~~~l~~al~~~ 333 (337)
T 3p1t_A 300 QVKDAGQFGLH-------------------HHIRISIG---REEDNDRLLAALAEY 333 (337)
T ss_dssp ECEEGGGGTCC-------------------SEEEEECC---CHHHHHHHHHHHHHH
T ss_pred EEEECccCCCC-------------------CeEEEecC---CHHHHHHHHHHHHHH
Confidence 99999877542 79999998 799999999999863
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-24 Score=282.61 Aligned_cols=319 Identities=12% Similarity=0.145 Sum_probs=247.0
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhC--CCCCcEEEeCCHHHHHHHHHHhcccccccC
Q psy15216 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIY--ADPREIIWTSGATESNNLAIKGAAHFYKKR 85 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g--~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~ 85 (2602)
++|+.+.+++.+.+.... +.++....+..+++++++++++| +++++|++|+|+|+|+++++.++. ++
T Consensus 45 ~~~~~v~~a~~~~~~~~~-------~~y~~~~~~~~~~l~~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~----~~ 113 (391)
T 4dq6_A 45 KAAPCIIDSLKNRLEQEI-------YGYTTRPDSYNESIVNWLYRRHNWKIKSEWLIYSPGVIPAISLLINELT----KA 113 (391)
T ss_dssp CCCHHHHHHHHHHHTTCC-------CCCBCCCHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHS----CT
T ss_pred CCCHHHHHHHHHHHhCCC-------CCCCCCCHHHHHHHHHHHHHHhCCCCcHHHeEEcCChHHHHHHHHHHhC----CC
Confidence 678999999999886421 11111235678889999999999 678899999999999999999987 89
Q ss_pred CCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccC--C--CCccChHHHHhhccCCceEEEEecccCccccccc---HHHH
Q psy15216 86 GKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK--N--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEI 158 (2602)
Q Consensus 86 gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~--~--~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~---l~~I 158 (2602)
||+|+++.+.|+++...+... |++++.++.+ . ++.+|++++++++++ +++|++++|+||||.++| +++|
T Consensus 114 gd~vl~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~v~i~~p~nptG~~~~~~~l~~i 189 (391)
T 4dq6_A 114 NDKIMIQEPVYSPFNSVVKNN---NRELIISPLQKLENGNYIMDYEDIENKIKD-VKLFILCNPHNPVGRVWTKDELKKL 189 (391)
T ss_dssp TCEEEECSSCCTHHHHHHHHT---TCEEEECCCEECTTSCEECCHHHHHHHCTT-EEEEEEESSBTTTTBCCCHHHHHHH
T ss_pred CCEEEEcCCCCHHHHHHHHHc---CCeEEeeeeeecCCCceEeeHHHHHHHhhc-CCEEEEECCCCCCCcCcCHHHHHHH
Confidence 999999999999987766654 9999999987 2 345899999999988 999999999999999965 7778
Q ss_pred HHHHHhcCCEEEEeccccccc----ccccCCCCCc-----cEEEeccccccCCCC--cEEEEEec-CCCCcccceecCCC
Q psy15216 159 GELCRSKGVIFHCDAAQAVGK----IDINIQNYKV-----DLMSFSAHKIYGPKG--IGALYIRR-NPRTRIEAQIHGGG 226 (2602)
Q Consensus 159 ~~la~~~g~~livD~a~a~g~----~~~dl~~~~~-----D~~~~S~~K~~Gp~G--~G~l~~~~-~~~~~l~~~~~g~~ 226 (2602)
.++|++||+++|+|++|+... .+..+..+.. .+++.|+||.+|++| +|++++++ ++.+.+.+...
T Consensus 190 ~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~--- 266 (391)
T 4dq6_A 190 GDICLKHNVKIISDEIHSDIILKKHKHIPMASISKEFEKNTITCMAPTKTFNIAGLQSSYVVLPDEKDYKLLDDAFT--- 266 (391)
T ss_dssp HHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHHHHH---
T ss_pred HHHHHHcCCEEEeeccccccccCCCCccCHHHcCccccCcEEEEEechhhccCcccceEEEEeCCHHHHHHHHHHHH---
Confidence 888999999999999997632 2223333333 388999999888766 79998876 56655554321
Q ss_pred ccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc--cChh
Q psy15216 227 HEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF--IEGE 304 (2602)
Q Consensus 227 ~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~--~~~~ 304 (2602)
.+..++++.+...++.++++....++++..++++++++++.+.|.+.+|++.+..+... ...++.++. .+..
T Consensus 267 ---~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 340 (391)
T 4dq6_A 267 ---RIDIKRNNCFSLVATEASYNNGESWLESFLEYLESNIDFAIKYINENMPKLKVRKPEGT---YLLWVDFSALGLSDE 340 (391)
T ss_dssp ---HTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECCCSBS---SEEEEECGGGCCCHH
T ss_pred ---hhcCCCCCHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEecCCCcc---EEEEEEhhhcCCCHH
Confidence 11245677788877778887545567888999999999999999875688888755432 233455553 4667
Q ss_pred HHHHHh--C-CeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 305 SLLMAI--K-DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 305 ~~~~~L--~-gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
++...| + ||.+++|..|... ..+++||+++ ++++++++++++|++.
T Consensus 341 ~~~~~l~~~~gi~v~~g~~~~~~-----------------~~~~iRis~~--~~~~~i~~~l~~l~~~ 389 (391)
T 4dq6_A 341 ELESILVQKGKVALNQGNSFGIG-----------------GSGYQRINLA--CPRSMLEEALIRIKNA 389 (391)
T ss_dssp HHHHHHHHTTCEECEEGGGGCTT-----------------CTTEEEEECC--SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCEEeeCchhhCCC-----------------CCCeEEEEEc--CCHHHHHHHHHHHHHH
Confidence 777777 5 9999999877542 1389999998 6899999999999863
|
| >2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.93 E-value=7.5e-25 Score=285.41 Aligned_cols=331 Identities=12% Similarity=0.114 Sum_probs=245.7
Q ss_pred CCCCCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCC----CCCcEEEeCCHHHHHHHHHHhcc
Q psy15216 4 SATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA----DPREIIWTSGATESNNLAIKGAA 79 (2602)
Q Consensus 4 a~~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~----~~~~Iv~t~g~T~al~~~~~~l~ 79 (2602)
.+..++++.+.+++.+.+.. + ..........+++++++++++. ++++|++|+|+|+|+++++.++.
T Consensus 11 p~p~~~~~~v~~a~~~~~~~-----~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~t~al~~~~~~~~ 80 (385)
T 2bkw_A 11 PGPIILSGAVQKALDVPSLG-----H-----TSPEFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFI 80 (385)
T ss_dssp SSSCCCCHHHHHTTSCCCCC-----T-----TSHHHHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHS
T ss_pred CCCcCchHHHHHHHhccccc-----c-----CCHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEcCchHHHHHHHHHHHh
Confidence 34446677777776554321 1 1122234567788888888875 35789999999999999999875
Q ss_pred cccccCCCEEEEcCC-CCcccHHHHHHHHhCCcEEEEecc-CCCCccChHHHHhhccC-CceEEEEecccCcccccccHH
Q psy15216 80 HFYKKRGKHIITVQT-EHKSVLDSIRKLENDGFRVTYLKP-KNNGLITLSQLEEKICS-DTILVSVMLVNNEIGVIQPIL 156 (2602)
Q Consensus 80 ~~~~~~gd~Vlv~~~-~~~s~~~~~~~~~~~G~~v~~v~~-~~~~~ld~e~l~~~i~~-~tklv~i~~~~npTG~~~~l~ 156 (2602)
. .+++||+|+++.+ .|+... ...++..|++++.+++ ++++.+|+++|++++++ ++++|++++++||||.++|++
T Consensus 81 ~-~~~~gd~vlv~~~~~~~~~~--~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~l~ 157 (385)
T 2bkw_A 81 L-SKAPNKNVLVVSTGTFSDRF--ADCLRSYGAQVDVVRPLKIGESVPLELITEKLSQNSYGAVTVTHVDTSTAVLSDLK 157 (385)
T ss_dssp C-TTCSCCEEEEECSSHHHHHH--HHHHHHTTCEEEEECCSSTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCHH
T ss_pred c-cCCCCCeEEEEcCCcchHHH--HHHHHHcCCceEEEecCCCCCCCCHHHHHHHHhcCCCCEEEEEccCCCcCeEcCHH
Confidence 1 1268999988744 333321 2344556999999998 77888999999999986 899999999999999999999
Q ss_pred HHHHHHHhc--CCEEEEecccccccccccCCCCCccEEEecccc-ccCCCCcEEEEEecCCCC-cccc------eecCCC
Q psy15216 157 EIGELCRSK--GVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRT-RIEA------QIHGGG 226 (2602)
Q Consensus 157 ~I~~la~~~--g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K-~~Gp~G~G~l~~~~~~~~-~l~~------~~~g~~ 226 (2602)
+|.++|++| |+++|+|++|+.+..++++..+++|++++|+|| ++||+|+|+++++++.++ .+.+ ..+++.
T Consensus 158 ~i~~~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~G~G~~~~~~~~~~~~l~~~~~~~~~~~~~~ 237 (385)
T 2bkw_A 158 AISQAIKQTSPETFFVVDAVCSIGCEEFEFDEWGVDFALTASQKAIGAPAGLSISLCSSRFMDYALNDSKNGHVHGYFSS 237 (385)
T ss_dssp HHHHHHHHHCTTSEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCSCEEEEEECHHHHHHHTCHHHHCCCSCSTTC
T ss_pred HHHHHHHhhCCCCEEEEECccccCCccccccccCceEEEecCccccccCCcceEEEEcHHHHHHHHhhccCCCCCceeec
Confidence 999999999 999999999999888878877889999999999 677999999999987655 4421 111110
Q ss_pred c------------cccccccCcchhHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHH-hhccCceEEeCCC-CC-CC
Q psy15216 227 H------------EYGLRSGTLATHQIVGMGEAFRLARI-EMKEELKRILFLQKRLYNGL-MESIEEIYINGDM-NN-RI 290 (2602)
Q Consensus 227 ~------------~~~~~~gt~~~~~~~al~~al~~~~~-~~~~~~~~~~~l~~~l~~~L-~~~~~g~~l~~~~-~~-~~ 290 (2602)
. ......++++..+++++.++++.... ++++..++++++++++.+.| .+ + ++++..+. .. ..
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~-g~~~~~~~~~~~~~ 315 (385)
T 2bkw_A 238 LRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNG-L-QLTSVSRYPSNMSA 315 (385)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTT-T-CCEESSCSSSTTBC
T ss_pred HHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHh-c-CceecccCcccccC
Confidence 0 01112468888898888889986543 47888999999999999999 77 5 78877532 11 23
Q ss_pred CceEEEEEcccChhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEe-cCC---CCCHHHHHHHHH
Q psy15216 291 PHNLNISFNFIEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFT-IGR---FTTEKEIDFTIK 364 (2602)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis-~~~---~~t~edid~li~ 364 (2602)
+.++.+.++. ..++.+.| +||.+++|..+.. ..+++||+ ++. .++++|++++++
T Consensus 316 ~~~~~~~~~~--~~~~~~~l~~~gi~v~~g~~~~~------------------~~~~iRis~~~~~~~~~~~e~i~~~~~ 375 (385)
T 2bkw_A 316 HGLTAVYVAD--PPDVIAFLKSHGVVIAGGIHKDI------------------GPKYIRIGHMGVTACNKNLPYMKNCFD 375 (385)
T ss_dssp SSCEEEECSC--HHHHHHHHHHTTEECBCCCCTTT------------------GGGEEEECCCGGGTSSTTCTHHHHHHH
T ss_pred CceEEEecCC--HHHHHHHHHHCCeEEeCCCCccc------------------CCCEEEEEccccccccCCHHHHHHHHH
Confidence 4455555543 56676666 7999987764321 13789999 652 479999999999
Q ss_pred HHHhh
Q psy15216 365 LLKMK 369 (2602)
Q Consensus 365 ~L~~~ 369 (2602)
+|++.
T Consensus 376 ~l~~~ 380 (385)
T 2bkw_A 376 LIKLA 380 (385)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99864
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.93 E-value=2.6e-24 Score=277.73 Aligned_cols=307 Identities=17% Similarity=0.099 Sum_probs=241.9
Q ss_pred CCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccC
Q psy15216 1402 TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKR 1481 (2602)
Q Consensus 1402 ~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~ 1481 (2602)
..+.++.+.+++.+.++....+|+. ...++|+++++++++++++|++|+|+|+|++.++.++. ++
T Consensus 43 ~~~~~~~v~~a~~~~~~~~~~y~~~-----------~~~~lr~~la~~~~~~~~~v~~~~g~t~a~~~~~~~~~----~~ 107 (363)
T 3ffh_A 43 PLGTSKKVAAIQANSSVETEIYPDG-----------WASSLRKEVADFYQLEEEELIFTAGVDELIELLTRVLL----DT 107 (363)
T ss_dssp TTCCCHHHHHHHHTCBSCCCBC---------------CHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHC----ST
T ss_pred CCCCCHHHHHHHHHHHHHhhcCCCc-----------chHHHHHHHHHHhCCChhhEEEeCCHHHHHHHHHHHHc----cC
Confidence 3467888999988866543334332 35789999999999988999999999999999999986 89
Q ss_pred CCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccCCceEEEEeccccccccccChHHHHHHhhhc
Q psy15216 1482 GKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSK 1561 (2602)
Q Consensus 1482 gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~~ia~~~ 1561 (2602)
||+|+++.++|+++...++.. |++++.++.++++.+|+++++++++++|++|++++|+||||.++|+++|.++++.+
T Consensus 108 gd~vl~~~~~~~~~~~~~~~~---g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~ 184 (363)
T 3ffh_A 108 TTNTVMATPTFVQYRQNALIE---GAEVREIPLLQDGEHDLEGMLNAIDEKTTIVWICNPNNPTGNYIELADIQAFLDRV 184 (363)
T ss_dssp TCEEEEEESSCHHHHHHHHHH---TCEEEEEECCTTSCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHTTS
T ss_pred CCEEEEcCCChHHHHHHHHHc---CCEEEEecCCCCCCcCHHHHHHhcccCCCEEEEeCCCCCcCCCcCHHHHHHHHHhC
Confidence 999999999999987777666 99999999988888999999999999999999999999999999999999999887
Q ss_pred --CCEEEEecccccCcc-----cccC-CCCCccEEEEccccccCCCce--EEEEEecCCCCccccccccCCccccCCCCC
Q psy15216 1562 --GVIFHCDAAQAVGKI-----DINI-QNYKVDLMSFSAHKIYGPKGI--GALYIRRNPRTRIEAQIHGGGHEYGLRSGT 1631 (2602)
Q Consensus 1562 --gi~vivD~a~~~g~~-----~~~l-~~~~~D~~v~S~~K~~gp~G~--G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt 1631 (2602)
|+++|+|++|+.... .... ...+..+++.|++|.+|++|+ |++++++++++.+.+.. ..++
T Consensus 185 ~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~---------~~~~ 255 (363)
T 3ffh_A 185 PSDVLVVLDEAYIEYVTPQPEKHEKLVRTYKNLIITRTFSKIYGLASARVGYGIADKEIIRQLNIVR---------PPFN 255 (363)
T ss_dssp CTTSEEEEECTTGGGCSSCCCCCGGGGGTCTTEEEEEESSSTTCCSSCCCEEEEECHHHHHHHHHTC---------CSCC
T ss_pred CCCcEEEEeCchHhhcCccccCHHHHhhcCCCEEEEeechhhhcCchhceeeeecCHHHHHHHHHhC---------CCCC
Confidence 999999999983221 1111 122345788899998888885 99999887666655432 1346
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecCCcHHHHHhc--CCE
Q psy15216 1632 LATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDI 1709 (2602)
Q Consensus 1632 ~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI 1709 (2602)
++...+.++.++|+.. .++++..+++.++++++.+.|.+ .+++.+..+. .....+.++. +..++...| +||
T Consensus 256 ~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~l~~~l~~-~~g~~~~~~~----~~~~~~~~~~-~~~~~~~~l~~~gi 328 (363)
T 3ffh_A 256 TTSIGQKLAIEAIKDQ-AFIGECRTSNANGIKQYEAFAKR-FEKVKLYPAN----GNFVLIDLGI-EAGTIFSYLEKNGY 328 (363)
T ss_dssp CBHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHHHHHH-CTTCEECCCC----SSEEEEECSS-CHHHHHHHHHHTTE
T ss_pred CCHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHHHHHHHhh-CCCceECCCC----CeEEEEECCC-CHHHHHHHHHHCCe
Confidence 7777777777888732 55788889999999999999987 6788776332 2233333332 556666666 899
Q ss_pred EEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1710 AVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1710 ~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
.+++|..|..+ +++|++++ |.+|+++++++|++
T Consensus 329 ~v~~g~~~~~~-------------------~~iRis~~---~~~~i~~~~~~l~~ 361 (363)
T 3ffh_A 329 ITRSGAALGFP-------------------TAVRITIG---KEEDNSAVIALLEK 361 (363)
T ss_dssp ECEETTTTTCT-------------------TEEEEECC---CHHHHHHHHHHHHH
T ss_pred EEEeCccCCCC-------------------CeEEEECC---CHHHHHHHHHHHHH
Confidence 99998876433 89999987 89999999999986
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.9e-24 Score=282.11 Aligned_cols=319 Identities=15% Similarity=0.125 Sum_probs=246.8
Q ss_pred CCCHHHHHHHHHHHhhh-cCCCCCCCcchhhhHHHHHHHHHHHHHHHhC--CCCCcEEEeCCHHHHHHHHHHhccccccc
Q psy15216 8 PIDPRVVDKMIPYLRVQ-FGNPASRNHIYGWTAEKAIEKARNEVAQLIY--ADPREIIWTSGATESNNLAIKGAAHFYKK 84 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~-~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g--~~~~~Iv~t~g~T~al~~~~~~l~~~~~~ 84 (2602)
++|+.+.+++.+.+... +.++ ....+..+++++++++.+| +++++|++|+|+|+|+++++.++. +
T Consensus 40 ~~~~~v~~a~~~~~~~~~~~y~--------~~~~~l~~~la~~l~~~~g~~~~~~~i~~~~g~~~a~~~~~~~l~----~ 107 (391)
T 3dzz_A 40 KIAPEIMASMEEKLKVAAFGYE--------SVPAEYYKAVADWEEIEHRARPKEDWCVFASGVVPAISAMVRQFT----S 107 (391)
T ss_dssp CCCHHHHHHHHHHHTTCCCCCB--------CCCHHHHHHHHHHHHHHHSCCCCGGGEEEESCHHHHHHHHHHHHS----C
T ss_pred CCCHHHHHHHHHHHhcCcCCCC--------CCCHHHHHHHHHHHHHHhCCCCCHHHEEECCCHHHHHHHHHHHhC----C
Confidence 68899999999988642 1111 1134577888888888888 677899999999999999999987 8
Q ss_pred CCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCC---CCccChHHHHhhcc-CCceEEEEecccCcccccc---cHHH
Q psy15216 85 RGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN---NGLITLSQLEEKIC-SDTILVSVMLVNNEIGVIQ---PILE 157 (2602)
Q Consensus 85 ~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~---~~~ld~e~l~~~i~-~~tklv~i~~~~npTG~~~---~l~~ 157 (2602)
+||+|+++.++|+++...+... |++++.++.++ ++.+|+++|+++++ +++++|++++|+||||.++ ++++
T Consensus 108 ~gd~vl~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~~p~nptG~~~~~~~l~~ 184 (391)
T 3dzz_A 108 PGDQILVQEPVYNMFYSVIEGN---GRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFCNPHNPIGYAWSEEEVKR 184 (391)
T ss_dssp TTCEEEECSSCCHHHHHHHHHT---TCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEESSBTTTTBCCCHHHHHH
T ss_pred CCCeEEECCCCcHHHHHHHHHc---CCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEEECCCCCCCcccCHHHHHH
Confidence 9999999999999987766654 99999999852 23489999999998 7999999999999999995 5788
Q ss_pred HHHHHHhcCCEEEEeccccccc----ccccCCCCC---cc--EEEeccccccCCCC--cEEEEEe-cCCCCcccceecCC
Q psy15216 158 IGELCRSKGVIFHCDAAQAVGK----IDINIQNYK---VD--LMSFSAHKIYGPKG--IGALYIR-RNPRTRIEAQIHGG 225 (2602)
Q Consensus 158 I~~la~~~g~~livD~a~a~g~----~~~dl~~~~---~D--~~~~S~~K~~Gp~G--~G~l~~~-~~~~~~l~~~~~g~ 225 (2602)
|+++|++||+++|+|++|+... .+.++..++ +| +++.|+||.+|++| +|+++++ +++.+.+.+...
T Consensus 185 i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~-- 262 (391)
T 3dzz_A 185 IAELCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWDAKNWVVSLISPSKTFNLAALHAACAIIPNPDLRARAEESFF-- 262 (391)
T ss_dssp HHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGSCTTTGGGEEEEECSHHHHTCTTTCCEEEECCSHHHHHHHHHHHH--
T ss_pred HHHHHHHCCCEEEEecccccccCCCCCceehhhcCccccCcEEEEEeChhhccccchhheEEEECCHHHHHHHHHHHH--
Confidence 8999999999999999997532 223333332 45 89999999888666 8999987 666666554321
Q ss_pred CccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc--cCh
Q psy15216 226 GHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF--IEG 303 (2602)
Q Consensus 226 ~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~--~~~ 303 (2602)
....++++.....++.++++....++++..++..++++++.+.|.+.+|++.+..+... ...++.++. .+.
T Consensus 263 ----~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 335 (391)
T 3dzz_A 263 ----LAGIGEPNLLAIPAAIAAYEEGHDWLRELKQVLRDNFAYAREFLAKEVPEVKVLDSNAS---YLAWVDISALGMNA 335 (391)
T ss_dssp ----HHTCSSCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECCCCBS---SEEEEECGGGCSCH
T ss_pred ----hhccCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEeccCce---EEEEEehhhcCCCH
Confidence 11234677778777778887545567889999999999999999874678888755432 334455553 466
Q ss_pred hHHHHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 304 ESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 304 ~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
.++...| +||.+++|..|... ..+++||+++ ++++++++++++|++.
T Consensus 336 ~~~~~~l~~~~gi~v~~g~~~~~~-----------------~~~~iRis~~--~~~~~i~~~l~~l~~~ 385 (391)
T 3dzz_A 336 EDFCKYLREKTGLIISAGNGYRGN-----------------GHEFVRINLA--CPKELVIDGMQRLKQG 385 (391)
T ss_dssp HHHHHHHHHHHCEECEESGGGCTT-----------------GGGEEEEECC--SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCEEEeCchhhCCC-----------------CCCEEEEEec--CCHHHHHHHHHHHHHH
Confidence 6777666 59999999877642 1388999998 6899999999999863
|
| >2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-23 Score=279.17 Aligned_cols=337 Identities=13% Similarity=-0.002 Sum_probs=246.4
Q ss_pred CCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCc-----EEEeCCHHHHHHHHHHhcccc
Q psy15216 7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE-----IIWTSGATESNNLAIKGAAHF 81 (2602)
Q Consensus 7 ~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~-----Iv~t~g~T~al~~~~~~l~~~ 81 (2602)
+++++.+.+++.+++.....++ ..+.....+.+++++++++++|+++++ +++|+|+|+|+.+++.++...
T Consensus 52 ~~~~~~v~e~~~~a~~~~~~~~-----~~~~~~~~l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~ 126 (452)
T 2dgk_A 52 TWDDENVHKLMDLSINKNWIDK-----EEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWR 126 (452)
T ss_dssp CCCCHHHHHHHHHTTTCBTTCT-----TTCHHHHHHHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccCCCCh-----hhChhHHHHHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHH
Confidence 3566788888877765322222 223455677889999999999997765 999999999999999887521
Q ss_pred cc----cCC-----CEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCC-CCccChHHHHhhccCCceEEEEecccCcccc
Q psy15216 82 YK----KRG-----KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NGLITLSQLEEKICSDTILVSVMLVNNEIGV 151 (2602)
Q Consensus 82 ~~----~~g-----d~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~-~~~ld~e~l~~~i~~~tklv~i~~~~npTG~ 151 (2602)
.. .+| ++|++++ .|+++...+..+ |++++.+++++ ++.+|+++|+++|+++|++|++++|+||||.
T Consensus 127 ~~~~~~~~G~~~~~~~vi~~~-~h~~~~~~~~~~---G~~v~~v~~~~~~~~~d~~~l~~~i~~~t~~v~~~~~~n~tG~ 202 (452)
T 2dgk_A 127 WRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYW---DVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGN 202 (452)
T ss_dssp HHHHHHHTTCCCSCCEEEESS-CCHHHHHHHHHT---TCEEEECCCBTTBCSCCHHHHHHHCCTTEEEEECBBSCTTTCB
T ss_pred HHHHHHhcCCCCCCcEEEECC-CcHHHHHHHHHc---CceEEEEecCCCCCeECHHHHHHHHhhCCEEEEEEcCCcCCcc
Confidence 10 144 6999999 999988777665 99999999887 7899999999999999999999999999999
Q ss_pred cccHHHHHHHHHhc------CCEEEEecccccccc-------cccCCCCCccEEEeccccc-cCCCCcEEEEEecC-CC-
Q psy15216 152 IQPILEIGELCRSK------GVIFHCDAAQAVGKI-------DINIQNYKVDLMSFSAHKI-YGPKGIGALYIRRN-PR- 215 (2602)
Q Consensus 152 ~~~l~~I~~la~~~------g~~livD~a~a~g~~-------~~dl~~~~~D~~~~S~~K~-~Gp~G~G~l~~~~~-~~- 215 (2602)
+.|+++|+++|++| |+++|+|++|+.+.. +.++...++|++++|+||+ ++|.|+|+++++++ ..
T Consensus 203 ~~~l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~hK~~~~~~~~G~~~~~~~~~~~ 282 (452)
T 2dgk_A 203 YEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALP 282 (452)
T ss_dssp BCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSSCEEEEESSGGGSC
T ss_pred cCCHHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCccchhhcCCCCCcEEEECcccccCCCCCeEEEEEcCHHHHH
Confidence 99999999999995 999999999987643 2343334789999999994 47889999999754 33
Q ss_pred Cccc--ceecCCCccccccccCcchhHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCC-CCC
Q psy15216 216 TRIE--AQIHGGGHEYGLRSGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNN-RIP 291 (2602)
Q Consensus 216 ~~l~--~~~~g~~~~~~~~~gt~~~~~~~al~~al~-~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~-~~~ 291 (2602)
+.+. +.+.++........++.+....+++.+++. +..+++++..+++.++++++.+.|.+ .++++++.+... ...
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~lg~~g~~~~~~~~~~~a~~l~~~L~~-~~~~~~~~~~~~~~~~ 361 (452)
T 2dgk_A 283 QELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAK-LGPYEFICTGRPDEGI 361 (452)
T ss_dssp GGGCEEECCTTCCEEECCSCCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSSEEEEEECCTTTBS
T ss_pred HHhccCccccCCCCCCcccCCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh-CCCeEEecCCCCCCCe
Confidence 3332 222222111111234555545666666776 34567889999999999999999988 678988754210 123
Q ss_pred ceEEEEEccc-----ChhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHH
Q psy15216 292 HNLNISFNFI-----EGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIK 364 (2602)
Q Consensus 292 ~~~~~~~~~~-----~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~ 364 (2602)
+++.|.++.. +..++...| +||.++... .+. ... ..+++|++++.++|++|++++++
T Consensus 362 ~~v~f~~~~~~~~~~~~~~l~~~L~~~Gi~v~~~~--~~~-----------~~~---~~~~lRis~~~~~t~e~id~li~ 425 (452)
T 2dgk_A 362 PAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFT--LGG-----------EAT---DIVVMRIMCRRGFEMDFAELLLE 425 (452)
T ss_dssp SEEEEEECTTCCCSCCHHHHHHHHHHTTCBCCEEE--CST-----------TCT---TCEEEEEECCTTCCHHHHHHHHH
T ss_pred EEEEEEecCcccccCCHHHHHHHHHhcCCeeeeee--CCc-----------ccC---CeEEEEEEecCCCCHHHHHHHHH
Confidence 4566666542 336777777 688765321 111 000 13689999999999999999999
Q ss_pred HHHhh
Q psy15216 365 LLKMK 369 (2602)
Q Consensus 365 ~L~~~ 369 (2602)
.|++.
T Consensus 426 ~l~~~ 430 (452)
T 2dgk_A 426 DYKAS 430 (452)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99864
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.1e-24 Score=280.51 Aligned_cols=313 Identities=17% Similarity=0.151 Sum_probs=242.8
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCC
Q psy15216 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK 87 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd 87 (2602)
++|+.+.+++.+.+.....++.. ....++|+.+++++++++++|++|+|+++|+++++.++. ++||
T Consensus 38 ~~~~~v~~a~~~~~~~~~~y~~~----------~~~~~l~~~la~~~~~~~~~v~~~~g~~~a~~~~~~~~~----~~gd 103 (381)
T 1v2d_A 38 PPPPFLLEAVRRALGRQDQYAPP----------AGLPALREALAEEFAVEPESVVVTSGATEALYVLLQSLV----GPGD 103 (381)
T ss_dssp CCCHHHHHHHHHHTTTSCSCCCT----------TCCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHHC----CTTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCC----------CCCHHHHHHHHHhcCCChhhEEEcCChHHHHHHHHHHhC----CCCC
Confidence 56889999999887641112111 124678999999999988899999999999999999987 7999
Q ss_pred EEEEcCCCCcccHHHHHHHHhCCcEEEEeccC---CCCccChHHHHhhccCCceEEEEecccCccccccc---HHHHHHH
Q psy15216 88 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPK---NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIGEL 161 (2602)
Q Consensus 88 ~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~---~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~---l~~I~~l 161 (2602)
+|+++.++|+++...++. .|++++.++.+ +++.+|+++|++++++++++|++++|+||||.++| +++|.++
T Consensus 104 ~Vl~~~~~~~~~~~~~~~---~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~ 180 (381)
T 1v2d_A 104 EVVVLEPFFDVYLPDAFL---AGAKARLVRLDLTPEGFRLDLSALEKALTPRTRALLLNTPMNPTGLVFGERELEAIARL 180 (381)
T ss_dssp EEEEEESCCTTHHHHHHH---TTCEEEEEECEEETTEEECCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHH
T ss_pred EEEEcCCCchhHHHHHHH---cCCEEEEEeCCCCCccCCcCHHHHHHhcCcCCEEEEECCCCCCCCCccCHHHHHHHHHH
Confidence 999999999998765544 49999999986 45779999999999999999999999999999987 7889999
Q ss_pred HHhcCCEEEEeccccccc---ccccCC--CCCccEEEeccccccCCCC--cEEEEEecCCCCcccceecCCCcccccccc
Q psy15216 162 CRSKGVIFHCDAAQAVGK---IDINIQ--NYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSG 234 (2602)
Q Consensus 162 a~~~g~~livD~a~a~g~---~~~dl~--~~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~g 234 (2602)
|++||+++|+|++|+... .+.++. ..+.|+++.|+||.+|++| +||+++++++++.+.... ....+
T Consensus 181 ~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~-------~~~~~ 253 (381)
T 1v2d_A 181 ARAHDLFLISDEVYDELYYGERPRRLREFAPERTFTVGSAGKRLEATGYRVGWIVGPKEFMPRLAGMR-------QWTSF 253 (381)
T ss_dssp HHHTTCEEEEECTTTTCBSSSCCCCHHHHCTTTEEEEEEHHHHTTCGGGCCEEEECCTTTHHHHHHHH-------HHHTS
T ss_pred HHHcCCEEEEEcCccccccCCCCCCHHHhcCCCEEEEeechhhcCCcccceEEEEeCHHHHHHHHHHH-------hhccc
Confidence 999999999999997542 222222 3467999999999888888 899999988776665432 11234
Q ss_pred CcchhHHHHHHHHHHHH--HHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcccChhHHHHHh--
Q psy15216 235 TLATHQIVGMGEAFRLA--RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI-- 310 (2602)
Q Consensus 235 t~~~~~~~al~~al~~~--~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L-- 310 (2602)
+++.+...++.++|+.. ..++++..+++.++++++.+.|.+ .++.+..+.. ..+..+.++..+ +...+
T Consensus 254 ~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~--~g~~~~~~~~---~~~~~~~~~~~~---~~~~l~~ 325 (381)
T 1v2d_A 254 SAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRA--MGLRVYVPEG---TYFLMAELPGWD---AFRLVEE 325 (381)
T ss_dssp SCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH--TTCCEECCSB---SSEEEEECTTCC---HHHHHHH
T ss_pred CCCcHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHH--CCCEecCCCc---ceEEEEecChHh---HHHHHHh
Confidence 66777777777888754 456788999999999999999988 5777765432 223344444332 43333
Q ss_pred CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 311 KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 311 ~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
+||.+++|..|... ....+++||+++. +++++++++++|++.
T Consensus 326 ~gi~v~~g~~~~~~---------------~~~~~~iRi~~~~--~~~~i~~~~~~l~~~ 367 (381)
T 1v2d_A 326 ARVALIPASAFYLE---------------DPPKDLFRFAFCK--TEEELHLALERLGRV 367 (381)
T ss_dssp TCEECEEGGGGCSS---------------SCCTTEEEEECCS--CHHHHHHHHHHHHHH
T ss_pred CCEEEecchHhCCC---------------CCCCCEEEEEeCC--CHHHHHHHHHHHHHH
Confidence 79999998877541 0123789999986 899999999999863
|
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.7e-24 Score=278.49 Aligned_cols=312 Identities=14% Similarity=0.091 Sum_probs=233.2
Q ss_pred CCCHHHHHHHHHHHhhhc-CCCCCCCcchhhhHHHHHHHHHHHHHHHh----CC--CCCcEEEeCCHHHHHHHHHHhccc
Q psy15216 8 PIDPRVVDKMIPYLRVQF-GNPASRNHIYGWTAEKAIEKARNEVAQLI----YA--DPREIIWTSGATESNNLAIKGAAH 80 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~-~~p~~~~~~~~~~~~~~~~~~r~~lA~~~----g~--~~~~Iv~t~g~T~al~~~~~~l~~ 80 (2602)
++|+.+.+++.+.+.... .++. .. ...++|+.+++++ |+ ++++|++|+|+++|+++++.++.
T Consensus 44 ~~~~~v~~a~~~~~~~~~~~y~~------~~----g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~~al~~~~~~l~- 112 (385)
T 1b5p_A 44 DTPEHVKEAARRALAQGKTKYAP------PA----GIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAIL- 112 (385)
T ss_dssp CCCHHHHHHHHHHHHTTCCSCCC------TT----CCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHhcCCCCCCC------CC----CCHHHHHHHHHHHHHHhCCCCChHHEEEcCChHHHHHHHHHHhc-
Confidence 457888999888875421 1211 11 1244555555555 53 67899999999999999999987
Q ss_pred ccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCC--CCccChHHHHhhccCCceEEEEecccCccccccc---H
Q psy15216 81 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---I 155 (2602)
Q Consensus 81 ~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~---l 155 (2602)
++||+|+++.|+|+++...++.. |++++.++.++ ++.+|+++|++++++++++|++++|+||||.++| +
T Consensus 113 ---~~gd~Vlv~~p~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~NPtG~~~~~~~l 186 (385)
T 1b5p_A 113 ---DPGDEVIVLSPYWVSYPEMVRFA---GGVVVEVETLPEEGFVPDPERVRRAITPRTKALVVNSPNNPTGAVYPKEVL 186 (385)
T ss_dssp ---CTTCEEEEEESCCTHHHHHHHHT---TCEEEEEECCGGGTTCCCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHH
T ss_pred ---CCCCEEEEcCCCchhHHHHHHHc---CCEEEEeecCcccCCCCCHHHHHHhcCCCCEEEEEeCCCCCCCCCcCHHHH
Confidence 79999999999999887766544 99999999874 5679999999999999999999999999999988 7
Q ss_pred HHHHHHHHhcCCEEEEecccccccc---cccCCCC--CccEEEeccccccCCCC--cEEEEEecCCCCcccceecCCCcc
Q psy15216 156 LEIGELCRSKGVIFHCDAAQAVGKI---DINIQNY--KVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHE 228 (2602)
Q Consensus 156 ~~I~~la~~~g~~livD~a~a~g~~---~~dl~~~--~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g~~~~ 228 (2602)
++|+++|++||+++|+|++|+.... ...+..+ +.++++.|+||.+|++| +||+++++++++.+.+....
T Consensus 187 ~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~~~~~~~~~~~l~~~~~~---- 262 (385)
T 1b5p_A 187 EALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFAMTGWRIGYACGPKEVIKAMASVSRQ---- 262 (385)
T ss_dssp HHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTTTEEEEEESTTTTTCGGGCCEEEECCHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHcCCEEEEEccchhcccCCCCCCHHHcCCCCEEEEEechhhcCCcccceEEEEeCHHHHHHHHHHHhh----
Confidence 8899999999999999999875432 1122222 55789999999999888 89999988776666543311
Q ss_pred ccccccCcchhHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEc--ccCh
Q psy15216 229 YGLRSGTLATHQIVGMGEAFRL---ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN--FIEG 303 (2602)
Q Consensus 229 ~~~~~gt~~~~~~~al~~al~~---~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~--~~~~ 303 (2602)
...+++.....++.++|+. ...++++.++++.++++++.+.|.+ + |+.+..+... ...++.++ +.+.
T Consensus 263 ---~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~---~~~~~~~~~~~~~~ 334 (385)
T 1b5p_A 263 ---STTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTA-L-GLKAVRPSGA---FYVLMDTSPIAPDE 334 (385)
T ss_dssp ---TTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-TCCBCCCSBT---TEEEEECTTTCSSH
T ss_pred ---ccCCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHH-C-CCeecCCCee---EEEEEecCCCCCCH
Confidence 1224555556666667753 3456788889999999999999987 4 7666544321 22333343 2456
Q ss_pred hHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 304 ESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 304 ~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
.++...| +||.+++|..|.. .+++|||++ ++++++++++++|++.
T Consensus 335 ~~l~~~l~~~gv~v~~g~~f~~-------------------~~~iRis~~--~~~~~i~~~l~~l~~~ 381 (385)
T 1b5p_A 335 VRAAERLLEAGVAVVPGTDFAA-------------------FGHVRLSYA--TSEENLRKALERFARV 381 (385)
T ss_dssp HHHHHHHHHTTEECEESGGGTC-------------------TTEEEEECC--SCHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHCCeEEecccccCC-------------------CCeEEEEec--CCHHHHHHHHHHHHHH
Confidence 6777776 7999999887632 278999998 7899999999999853
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.5e-24 Score=276.75 Aligned_cols=312 Identities=15% Similarity=0.108 Sum_probs=244.7
Q ss_pred eeeccC--CCCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHH
Q psy15216 1395 NIVFKD--ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIK 1472 (2602)
Q Consensus 1395 ~v~L~~--~~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~ 1472 (2602)
.++++. +..+.++.+++++.+.++...++|+.. ..++|+++++++|+++++|++|+|+|+|++.++.
T Consensus 32 ~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~~-----------~~~lr~~la~~~~~~~~~v~~~~g~~~a~~~~~~ 100 (365)
T 3get_A 32 VIKLASNENPFGTPPKAIECLRQNANKAHLYPDDS-----------MIELKSTLAQKYKVQNENIIIGAGSDQVIEFAIH 100 (365)
T ss_dssp CEECSSCCCTTCSCHHHHHHHHHHGGGTTSCCCTT-----------CHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHH
T ss_pred eEEecCCCCCCCCCHHHHHHHHHHHHhhccCCCCC-----------hHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHH
Confidence 345542 334678999999999987655665541 1478999999999988999999999999999999
Q ss_pred hhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEecc-CCCCCcChhHHHhhccCCceEEEEeccccccccccCh
Q psy15216 1473 GAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP-KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPI 1551 (2602)
Q Consensus 1473 ~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~-~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l 1551 (2602)
++. ++||+|+++.++|+++...+... |++++.++. +.++ +|++++++++++++++|++++|+||||.++|+
T Consensus 101 ~l~----~~gd~vl~~~~~~~~~~~~~~~~---g~~~~~v~~~~~~~-~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~ 172 (365)
T 3get_A 101 SKL----NSKNAFLQAGVTFAMYEIYAKQC---GAKCYKTQSITHNL-DEFKKLYETHKDEIKLIFLCLPNNPLGECLDA 172 (365)
T ss_dssp HHC----CTTCEEEECSSCCTHHHHHHHHH---TCEEEECSSSSCCH-HHHHHHHHHTTTTEEEEEEESSCTTTCCCCCH
T ss_pred HHh----CCCCEEEEeCCChHHHHHHHHHc---CCEEEEEecCCCCC-CCHHHHHHHhCCCCCEEEEcCCCCCCCCCcCH
Confidence 986 89999999999999988777766 999999998 6678 99999999999999999999999999999999
Q ss_pred HHHHHHhh--hcCCEEEEeccccc------CcccccC----CCCCccEEEEccccccCCCc--eEEEEEecCCCCccccc
Q psy15216 1552 LEIGELCR--SKGVIFHCDAAQAV------GKIDINI----QNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQ 1617 (2602)
Q Consensus 1552 ~~I~~ia~--~~gi~vivD~a~~~------g~~~~~l----~~~~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~ 1617 (2602)
++|.++++ ++|+++|+|++|+. +..+.+. ...+.++++.|+||.+|++| +|++++++++++.+...
T Consensus 173 ~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~ 252 (365)
T 3get_A 173 SEATEFIKGVNEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLGGLRIGYGIANANIISAFYKL 252 (365)
T ss_dssp HHHHHHHHTSCTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTTSCTTTCCEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEEEeecchHhcCcchheEEEEcCHHHHHHHHHh
Confidence 88888887 67999999999973 2222221 12345788999999888666 79999987766655443
Q ss_pred cccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecC
Q psy15216 1618 IHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI 1697 (2602)
Q Consensus 1618 ~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~ 1697 (2602)
. ...+++...+.++.++|+.. .++++.++++.++++++.+.|.+ . ++.+..+. .....+.++..
T Consensus 253 ~---------~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~l~~~l~~-~-g~~~~~~~----~~~~~~~~~~~ 316 (365)
T 3get_A 253 R---------APFNVSNLALKAAVAAMDDD-EFTEKTLENNFSQMELYKEFAKK-H-NIKIIDSY----TNFITYFFDEK 316 (365)
T ss_dssp S---------CTTCSCHHHHHHHHHHHTCH-HHHHHHHHHHHHHHHHHHHHHHH-T-TCEECCCS----SSEEEEECSSS
T ss_pred c---------CCCCcCHHHHHHHHHHhCCH-HHHHHHHHHHHHHHHHHHHHHHh-C-CCEECCCC----CeEEEEECCCC
Confidence 2 12346777777777777732 55788889999999999999988 4 77765332 12333444433
Q ss_pred CcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1698 EGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1698 ~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
+..++...| +||.+++|..|. . +++|++++ +.+|+++++++|++
T Consensus 317 ~~~~~~~~l~~~gi~v~~g~~~~-~-------------------~~iRis~~---~~~~i~~l~~~l~~ 362 (365)
T 3get_A 317 NSTDLSEKLLKKGIIIRNLKSYG-L-------------------NAIRITIG---TSYENEKFFTEFDK 362 (365)
T ss_dssp CHHHHHHHHHTTTEECEECGGGT-C-------------------SEEEEECC---CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCEEEEECccCC-C-------------------CEEEEEcC---CHHHHHHHHHHHHH
Confidence 566676666 799999988764 2 79999987 89999999999986
|
| >2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=5.6e-24 Score=276.08 Aligned_cols=338 Identities=12% Similarity=0.093 Sum_probs=239.6
Q ss_pred CCCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccC
Q psy15216 6 TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKR 85 (2602)
Q Consensus 6 ~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~ 85 (2602)
.+++|+.+++++.+.+...+.+|+ +..+++++.+++++|++ ++++++|+|+|+++++.++.. .+++
T Consensus 8 ~~~~~~~v~~a~~~~~~~~~~~~~-----------~~~~~l~~~la~~~~~~--~v~~~~ggt~al~~~~~~~~~-~~~~ 73 (375)
T 2fnu_A 8 EPCLDKEDKKAVLEVLNSKQLTQG-----------KRSLLFEEALCEFLGVK--HALVFNSATSALLTLYRNFSE-FSAD 73 (375)
T ss_dssp CCCCCHHHHHHHHHHHTSSCCSSS-----------HHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHSSC-CCTT
T ss_pred CCCCCHHHHHHHHHHHHcCcccCC-----------hHHHHHHHHHHHHhCCC--eEEEeCCHHHHHHHHHHHhcc-cCCC
Confidence 468899999999998865332321 25788999999999986 899999999999999999820 0279
Q ss_pred CCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHhc
Q psy15216 86 GKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSK 165 (2602)
Q Consensus 86 gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~~ 165 (2602)
||+|+++.++|+++...+... |++++.+++++++.+|+++|++++++++++|+++++ ||.+.|+++|.++|++|
T Consensus 74 gd~Vl~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~---tG~~~~l~~i~~l~~~~ 147 (375)
T 2fnu_A 74 RNEIITTPISFVATANMLLES---GYTPVFAGIKNDGNIDELALEKLINERTKAIVSVDY---AGKSVEVESVQKLCKKH 147 (375)
T ss_dssp SCEEEECSSSCTHHHHHHHHT---TCEEEECCBCTTSSBCGGGSGGGCCTTEEEEEEECG---GGCCCCHHHHHHHHHHH
T ss_pred CCEEEECCCccHhHHHHHHHC---CCEEEEeccCCCCCCCHHHHHhhcCcCceEEEEeCC---cCCccCHHHHHHHHHHc
Confidence 999999999999998877654 999999999887789999999999999999988887 99999999999999999
Q ss_pred CCEEEEeccccccccccc--CCCCCccEEEeccc--cccCCCCcEEEEEe--cCCCCcccceecCCCc---cccccccCc
Q psy15216 166 GVIFHCDAAQAVGKIDIN--IQNYKVDLMSFSAH--KIYGPKGIGALYIR--RNPRTRIEAQIHGGGH---EYGLRSGTL 236 (2602)
Q Consensus 166 g~~livD~a~a~g~~~~d--l~~~~~D~~~~S~~--K~~Gp~G~G~l~~~--~~~~~~l~~~~~g~~~---~~~~~~gt~ 236 (2602)
|+++|+|++|+.+..+.. +..++ |++++|++ |++|+ |+|+++++ +++++.+.+...++.. ++.+..+++
T Consensus 148 ~~~li~D~a~~~~~~~~~~~~~~~~-~i~~~s~s~~K~~~~-g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (375)
T 2fnu_A 148 SLSFLSDSSHALGSEYQNKKVGGFA-LASVFSFHAIKPITT-AEGGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVKSI 225 (375)
T ss_dssp TCEEEEECTTCTTCEETTEETTSSS-SEEEEECCTTSSSCC-SSCEEEEESCHHHHHHHHHHTBTTEEESSSSCEEESSC
T ss_pred CCEEEEECccccCCeECCeeccccC-CeEEEeCCCCCCccc-cCceEEEeCCHHHHHHHHHHHhcCCccccccccccccc
Confidence 999999999998865432 33333 56655555 98888 89999885 4455556554332221 111211111
Q ss_pred chh-HHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCC--CCCCCceEEEEEcc--c-ChhHHHHH
Q psy15216 237 ATH-QIVGMGEAFRL-ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDM--NNRIPHNLNISFNF--I-EGESLLMA 309 (2602)
Q Consensus 237 ~~~-~~~al~~al~~-~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~--~~~~~~~~~~~~~~--~-~~~~~~~~ 309 (2602)
+.. ....+.+++.+ ...++++..++..++++++.+.|.+ ++++++..++ ....+..+.+.++. . +..++.+.
T Consensus 226 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 304 (375)
T 2fnu_A 226 GHNFRLNEIQSALGLSQLKKAPFLMQKREEAALTYDRIFKD-NPYFTPLHPLLKDKSSNHLYPILMHQKFFTCKKLILES 304 (375)
T ss_dssp CCBCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTT-CSSEEESGGGCSSCCCCSCEEEEECGGGGGGHHHHHHH
T ss_pred cccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCccccCCCCCCCcceEEEEEEeCccccchHHHHHHH
Confidence 111 11111122221 2346788889999999999999988 7888887652 12233445566654 2 56677777
Q ss_pred h--CCeEEcccccCCCCCCChHHHHHHcC---C--CccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 310 I--KDIAVSSGSACTSASLEPSYVLRALG---C--NDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 310 L--~gI~v~~g~~~~~~~~~~~~~~~~~g---~--~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
| +||.++. .|.+.+..+.+.. .+. . .+....+++||+++.++|++|+++++++|++.
T Consensus 305 L~~~gi~v~~--~~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~ 368 (375)
T 2fnu_A 305 LHKRGILAQV--HYKPIYQYQLYQQ-LFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHSVLKT 368 (375)
T ss_dssp HHHTTEECBC--CCCCGGGSHHHHH-HHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred HHHCCCCccc--cccccccchhhhc-CCCccCChHHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 7 7999883 3433222222210 000 1 00112368999999999999999999999864
|
| >3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.3e-23 Score=278.67 Aligned_cols=337 Identities=15% Similarity=0.069 Sum_probs=250.5
Q ss_pred CCCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCC--CCcE---EEeCCHHHHHHHHHHhccc
Q psy15216 6 TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYAD--PREI---IWTSGATESNNLAIKGAAH 80 (2602)
Q Consensus 6 ~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~--~~~I---v~t~g~T~al~~~~~~l~~ 80 (2602)
++++++.+.+++.+++...+.+++. ......+.+++++++++++|++ ++++ ++|+|+|+|+.+++.++..
T Consensus 65 t~~~~~~v~~~l~~~~~~~~~~~~~-----~p~~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~~ 139 (502)
T 3hbx_A 65 TTWMEPECDKLIMSSINKNYVDMDE-----YPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKR 139 (502)
T ss_dssp CCCCCHHHHHHHHHTTTCBTTCTTT-----CHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhccCCCChhc-----ChhHHHHHHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHHH
Confidence 4678899999998887654444432 2335667788999999999997 5543 4699999999999988762
Q ss_pred ccc----cCCC-----EEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCC-CccChHHHHhhccCCceEEEEecccCccc
Q psy15216 81 FYK----KRGK-----HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN-GLITLSQLEEKICSDTILVSVMLVNNEIG 150 (2602)
Q Consensus 81 ~~~----~~gd-----~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~-~~ld~e~l~~~i~~~tklv~i~~~~npTG 150 (2602)
... .+|+ +|+++.++|+++...+..+ |++++.++++++ +.+|+++|+++++++|++|++++++||||
T Consensus 140 ~~~~~~~~~G~~~~~~~vi~~~~~h~s~~~~~~~~---G~~~~~v~~~~~~~~~d~~~l~~~i~~~t~~v~~~~~~n~tG 216 (502)
T 3hbx_A 140 KWQNKRKAEGKPVDKPNIVTGANVQVCWEKFARYF---EVELKEVKLSEGYYVMDPQQAVDMVDENTICVAAILGSTLNG 216 (502)
T ss_dssp HHHHHHHHTTCCCSCCEEEEETTCCHHHHHHHHHT---TCEEEEECCBTTBCSCCHHHHHHHCCTTEEEEEEEBSCTTTC
T ss_pred HHhHHHHhcCCCCCCcEEEEcCCchHHHHHHHHHc---CceeEEEecCCCcCcCCHHHHHHHHhhCCEEEEEecCCCCCC
Confidence 110 1266 9999999999988777665 999999998775 88999999999999999999999999999
Q ss_pred ccccHHHHHHHHHhc------CCEEEEeccccccc-------ccccCCCCCccEEEecccccc-CCCCcEEEEEecC-CC
Q psy15216 151 VIQPILEIGELCRSK------GVIFHCDAAQAVGK-------IDINIQNYKVDLMSFSAHKIY-GPKGIGALYIRRN-PR 215 (2602)
Q Consensus 151 ~~~~l~~I~~la~~~------g~~livD~a~a~g~-------~~~dl~~~~~D~~~~S~~K~~-Gp~G~G~l~~~~~-~~ 215 (2602)
.+.|+++|.++|+++ |+++|+|+||+.+. .+.++...++|++.+|+||++ +|.|+|++++++. .+
T Consensus 217 ~~~~l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~~~~~~~~D~v~~s~hK~l~~p~g~G~~~~~~~~~l 296 (502)
T 3hbx_A 217 EFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDL 296 (502)
T ss_dssp CBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSSCEEEEESSGGGS
T ss_pred cccCHHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCcccccccCCCCceEEEECcccccCCCCCeEEEEEeCHHHh
Confidence 999999999999999 99999999998443 233444457899999999954 8999999988753 33
Q ss_pred Ccc---cceecCCCccccccccCcchhHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCC
Q psy15216 216 TRI---EAQIHGGGHEYGLRSGTLATHQIVGMGEAFRL-ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIP 291 (2602)
Q Consensus 216 ~~l---~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~-~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~ 291 (2602)
... .+.+.++........++.+...++++.+++.. ..+++.++.++..++++++.+.|.+ .++++++.+.. ..
T Consensus 297 ~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~-~~~~~~~~~~~--~~ 373 (502)
T 3hbx_A 297 PEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEK-TERFNIVSKDE--GV 373 (502)
T ss_dssp CGGGCEEECSSSSCEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TTCEEECSCSS--SS
T ss_pred hHHhccCcccccCCCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCEEEEeCCC--Cc
Confidence 221 22222222211112345555566777777774 3567889999999999999999988 67899886511 12
Q ss_pred ceEEEEEcc---cChhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHH
Q psy15216 292 HNLNISFNF---IEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLL 366 (2602)
Q Consensus 292 ~~~~~~~~~---~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L 366 (2602)
+++.|.++. .+..++.+.| +||.++....... . ....++||+++.++|.+|++++++.|
T Consensus 374 ~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~p~~-------------~---~~~~~lRisv~~~~t~edid~li~~L 437 (502)
T 3hbx_A 374 PLVAFSLKDSSCHTEFEISDMLRRYGWIVPAYTMPPN-------------A---QHITVLRVVIREDFSRTLAERLVIDI 437 (502)
T ss_dssp SEEEEEESSCSSCCHHHHHHHHHTTTCBCCEEECCTT-------------C---TTCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred eEEEEEecCCCcCCHHHHHHHHHhCCcEEeeccCCcc-------------c---CCceEEEEEeCCCCCHHHHHHHHHHH
Confidence 455666654 2345777777 6888753221110 0 11268999999999999999999999
Q ss_pred Hhh
Q psy15216 367 KMK 369 (2602)
Q Consensus 367 ~~~ 369 (2602)
++.
T Consensus 438 ~~~ 440 (502)
T 3hbx_A 438 EKV 440 (502)
T ss_dssp HHH
T ss_pred HHH
Confidence 964
|
| >2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.9e-23 Score=277.38 Aligned_cols=336 Identities=13% Similarity=-0.007 Sum_probs=246.4
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCc-----EEEeCCHHHHHHHHHHhhhhhh
Q psy15216 1404 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE-----IIWTSGATESNNLAIKGAAHFY 1478 (2602)
Q Consensus 1404 ~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~-----iv~t~gaT~al~~al~~l~~~~ 1478 (2602)
+.++.+.+++.+.+.....++. .++...++..++++++++++|+++++ +++|+|+|+|+.+++.++....
T Consensus 53 ~~~~~v~e~~~~a~~~~~~~~~-----~~~~~~~l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~ 127 (452)
T 2dgk_A 53 WDDENVHKLMDLSINKNWIDKE-----EYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRW 127 (452)
T ss_dssp CCCHHHHHHHHHTTTCBTTCTT-----TCHHHHHHHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHhccCCCChh-----hChhHHHHHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHH
Confidence 4456788888877754333332 23456678899999999999997765 9999999999999998876211
Q ss_pred c----cCC-----CEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCC-CCCcChhHHHhhccCCceEEEEeccccccccc
Q psy15216 1479 K----KRG-----KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NGLITLSQLEEKICSDTILVSVMLVNNEIGVI 1548 (2602)
Q Consensus 1479 ~----~~g-----d~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~-~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~ 1548 (2602)
. .+| ++|++++ .|+++...+..+ |++++.+++++ ++.+|+++|+++|+++|++|++++++||||.+
T Consensus 128 ~~~~~~~G~~~~~~~vi~~~-~h~~~~~~~~~~---G~~v~~v~~~~~~~~~d~~~l~~~i~~~t~~v~~~~~~n~tG~~ 203 (452)
T 2dgk_A 128 RKRMEAAGKPTDKPNLVCGP-VQICWHKFARYW---DVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNY 203 (452)
T ss_dssp HHHHHHTTCCCSCCEEEESS-CCHHHHHHHHHT---TCEEEECCCBTTBCSCCHHHHHHHCCTTEEEEECBBSCTTTCBB
T ss_pred HHHHHhcCCCCCCcEEEECC-CcHHHHHHHHHc---CceEEEEecCCCCCeECHHHHHHHHhhCCEEEEEEcCCcCCccc
Confidence 1 144 6999999 999988777665 99999999887 78999999999999999999999999999999
Q ss_pred cChHHHHHHhhhc------CCEEEEecccccCcc-------cccCCCCCccEEEEcccc-ccCCCceEEEEEecC-CC-C
Q psy15216 1549 QPILEIGELCRSK------GVIFHCDAAQAVGKI-------DINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRN-PR-T 1612 (2602)
Q Consensus 1549 ~~l~~I~~ia~~~------gi~vivD~a~~~g~~-------~~~l~~~~~D~~v~S~~K-~~gp~G~G~l~~~~~-~~-~ 1612 (2602)
.|+++|.++|++| |+|+|+|+||+.+.. +.++...++|++++|+|| +++|.|+|+++++++ .+ +
T Consensus 204 ~~l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~hK~~~~~~~~G~~~~~~~~~~~~ 283 (452)
T 2dgk_A 204 EFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQ 283 (452)
T ss_dssp CCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSSCEEEEESSGGGSCG
T ss_pred CCHHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCccchhhcCCCCCcEEEECcccccCCCCCeEEEEEcCHHHHHH
Confidence 9999999999995 999999999987643 233333478999999999 457888999999754 33 3
Q ss_pred cc--ccccccCCccccCCCCCcchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCC-CCCc
Q psy15216 1613 RI--EAQIHGGGHEYGLRSGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNN-RIPH 1688 (2602)
Q Consensus 1613 ~l--~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~-~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~-~~~~ 1688 (2602)
.+ .+.+.++........++.+.....++.+++. +...+++++.++..++++++.+.|.+ .+++.+..+... ...+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~lg~~g~~~~~~~~~~~a~~l~~~L~~-~~~~~~~~~~~~~~~~~ 362 (452)
T 2dgk_A 284 ELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAK-LGPYEFICTGRPDEGIP 362 (452)
T ss_dssp GGCEEECCTTCCEEECCSCCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSSEEEEEECCTTTBSS
T ss_pred HhccCccccCCCCCCcccCCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh-CCCeEEecCCCCCCCeE
Confidence 32 2222222211111234555555666667776 34567889999999999999999988 778888743210 1234
Q ss_pred eEEEEEecC-----CcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHH
Q psy15216 1689 NLNISFNFI-----EGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKL 1761 (2602)
Q Consensus 1689 ~~~~~~~~~-----~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~ 1761 (2602)
...|.++.. +..++...| +||.++.... +.. + ...+++|++++.++|.+|++++++.
T Consensus 363 ~v~f~~~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~--~~~---------~-----~~~~~lRis~~~~~t~e~id~li~~ 426 (452)
T 2dgk_A 363 AVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTL--GGE---------A-----TDIVVMRIMCRRGFEMDFAELLLED 426 (452)
T ss_dssp EEEEEECTTCCCSCCHHHHHHHHHHTTCBCCEEEC--STT---------C-----TTCEEEEEECCTTCCHHHHHHHHHH
T ss_pred EEEEEecCcccccCCHHHHHHHHHhcCCeeeeeeC--Ccc---------c-----CCeEEEEEEecCCCCHHHHHHHHHH
Confidence 555666532 236677666 6876653211 110 0 0136899999999999999999999
Q ss_pred HHHh
Q psy15216 1762 LKMK 1765 (2602)
Q Consensus 1762 L~~~ 1765 (2602)
|++.
T Consensus 427 l~~~ 430 (452)
T 2dgk_A 427 YKAS 430 (452)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9873
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.92 E-value=7.2e-24 Score=274.08 Aligned_cols=318 Identities=11% Similarity=0.095 Sum_probs=246.3
Q ss_pred eceeeeccCC--CCCCCHHHHHHHHHHHhh--ccCCCCCccchhHHHHHHHHHHHHHHHHHHhCC-CCCcEEEeCCHHHH
Q psy15216 1392 PYTNIVFKDA--TTPIDPRVVDKMIPYLRV--QFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-DPREIIWTSGATES 1466 (2602)
Q Consensus 1392 P~~~v~L~~~--~~~~~~~v~eal~~~l~~--~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~-~~~~iv~t~gaT~a 1466 (2602)
|...+.++.+ ..+.++.+.+++.+.+.. ...++.. ...++|+++++++|+ ++++|++|+|+|+|
T Consensus 29 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~-----------~~~~l~~~la~~~g~~~~~~i~~~~g~t~a 97 (367)
T 3euc_A 29 SHGLVKLDAMENPYRLPPALRSELAARLGEVALNRYPVP-----------SSEALRAKLKEVMQVPAGMEVLLGNGSDEI 97 (367)
T ss_dssp CTTCEECCSSCCCCCCCHHHHHHHHHHHHHHHTTCSCCC-----------CHHHHHHHHHHHHTCCTTCEEEEEEHHHHH
T ss_pred CCCeeEccCCCCCCCCCHHHHHHHHHHhhhhhhhcCCCC-----------cHHHHHHHHHHHhCCCCcceEEEcCCHHHH
Confidence 3455666533 346788999999998874 3333332 257899999999999 77899999999999
Q ss_pred HHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccC-CceEEEEecccccc
Q psy15216 1467 NNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS-DTILVSVMLVNNEI 1545 (2602)
Q Consensus 1467 l~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~-~t~lv~l~~~~n~t 1545 (2602)
++.++.++. ++||+|+++.++|+++...+.. .|++++.++.++++.+|+++|++++++ +|++|++++|+|||
T Consensus 98 ~~~~~~~~~----~~gd~Vl~~~~~~~~~~~~~~~---~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~npt 170 (367)
T 3euc_A 98 ISMLALAAA----RPGAKVMAPVPGFVMYAMSAQF---AGLEFVGVPLRADFTLDRGAMLAAMAEHQPAIVYLAYPNNPT 170 (367)
T ss_dssp HHHHHHHTC----CTTCEEEEEESCSCCSCHHHHT---TTCEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEESSCTTT
T ss_pred HHHHHHHHc----CCCCEEEEcCCCHHHHHHHHHH---cCCeEEEecCCCCCCCCHHHHHHHhhccCCCEEEEcCCCCCC
Confidence 999999986 8999999999999998776554 499999999998889999999999998 99999999999999
Q ss_pred ccccC---hHHHHHHhhhc--CCEEEEecccccCc---ccccCCCCCccEEEEccccccCCCc--eEEEEEecCCCCccc
Q psy15216 1546 GVIQP---ILEIGELCRSK--GVIFHCDAAQAVGK---IDINIQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIE 1615 (2602)
Q Consensus 1546 G~~~~---l~~I~~ia~~~--gi~vivD~a~~~g~---~~~~l~~~~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~ 1615 (2602)
|.++| +++|.++|++| |+++|+|++|+... ....+...+.++++.|+||. +++| +||+++++++++.+.
T Consensus 171 G~~~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~-~~~G~r~G~~~~~~~~~~~~~ 249 (367)
T 3euc_A 171 GNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQESWMSRLTDFGNLLVMRTVSKL-GLAGIRLGYVAGDPQWLEQLD 249 (367)
T ss_dssp CCCCCHHHHHHHHHHTBTTSCBCEEEEECTTCCSSSCCSGGGGGTCTTEEEEEECCCT-TSCSCCEEEEEECHHHHHHHG
T ss_pred CCCCCHHHHHHHHHhhhhcCCCcEEEEeCcchhhcccchHHHHhhCCCEEEEecchhh-cccccCceeeeeCHHHHHHHH
Confidence 99987 67788889999 99999999987321 11122334566889999998 6666 799999877665554
Q ss_pred cccccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEe
Q psy15216 1616 AQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN 1695 (2602)
Q Consensus 1616 ~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~ 1695 (2602)
... ..++.+...+.++.++|+. ..++++..+++.++++++.+.|.+ ++++.+..+ . .....+.++
T Consensus 250 ~~~---------~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~l~~~l~~-~~g~~~~~~-~---~~~~~~~~~ 314 (367)
T 3euc_A 250 KVR---------PPYNVNVLTEATALFALEH-VAVLDEQAAQLRAERSRVAEGMAA-HGGVTVFPS-A---ANFLLARVP 314 (367)
T ss_dssp GGC---------CSSCCCHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHT-STTCEECCC-S---SSEEEEECS
T ss_pred HhC---------CCCCCCHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHh-CCCcEECCC-C---CeEEEEECC
Confidence 332 1335677777777777775 455788889999999999999987 678875432 1 223334443
Q ss_pred cCCcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1696 FIEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1696 ~~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
+..++...| +||.++++..|... ..+++|+|++ |.+|+++++++|++.
T Consensus 315 --~~~~l~~~l~~~gi~v~~~~~~~~~-----------------~~~~iRis~~---~~~~i~~~~~~l~~~ 364 (367)
T 3euc_A 315 --DAAQTFDRLLARKVLIKNVSKMHPL-----------------LANCLRVTVS---TPEENAQFLEAFAAS 364 (367)
T ss_dssp --CHHHHHHHHHTTTEECEECGGGCGG-----------------GTTEEEEECC---CHHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHCCeEEEECCccCCC-----------------CCCEEEEecC---CHHHHHHHHHHHHHH
Confidence 566676666 79999988876431 2389999987 899999999999873
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=99.92 E-value=7.1e-24 Score=273.27 Aligned_cols=302 Identities=20% Similarity=0.167 Sum_probs=235.6
Q ss_pred CCCHHHHHHHHHHHhh----hcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccc
Q psy15216 8 PIDPRVVDKMIPYLRV----QFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYK 83 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~----~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~ 83 (2602)
++|+.+.+++.+.+.. .+.+|.. ...++|+++++++|+++++|++|+|+++|+++++.++.
T Consensus 39 ~~~~~v~~a~~~~~~~~~~~~~~y~~~-----------~~~~lr~~la~~~g~~~~~i~~t~g~~~al~~~~~~l~---- 103 (360)
T 3hdo_A 39 PPSPEVVKAILEELGPDGAALRIYPSA-----------SSQKLREVAGELYGFDPSWIIMANGSDEVLNNLIRAFA---- 103 (360)
T ss_dssp CCCHHHHHHHHHHHTTTCGGGGSCCCS-----------SCHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHC----
T ss_pred CCCHHHHHHHHHHHhcccchhhcCCCC-----------chHHHHHHHHHHhCcCcceEEEcCCHHHHHHHHHHHHh----
Confidence 6789999999998875 3444432 13678999999999988999999999999999999987
Q ss_pred cCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHH
Q psy15216 84 KRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCR 163 (2602)
Q Consensus 84 ~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~ 163 (2602)
++||+|+++.+.|+++...+... |++++.++.++++.+ +++++.+ +++++++++|+||||.++|+++|.++|+
T Consensus 104 ~~gd~Vl~~~p~~~~~~~~~~~~---g~~~~~v~~~~~~~~--~~l~~~~--~~~~v~i~~p~nptG~~~~~~~l~~l~~ 176 (360)
T 3hdo_A 104 AEGEEIGYVHPSYSYYGTLAEVQ---GARVRTFGLTGDFRI--AGFPERY--EGKVFFLTTPNAPLGPSFPLEYIDELAR 176 (360)
T ss_dssp CTTCEEEEESSSCTHHHHHHHHH---TCEEEEECBCTTSSB--TTCCSSB--CSSEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred CCCCEEEEcCCChHHHHHHHHHC---CCEEEEeeCCCCCCH--HHHHhhc--CCCEEEEeCCCCCCCCCcCHHHHHHHHH
Confidence 89999999999999988777666 999999998776655 5555544 3679999999999999999999999999
Q ss_pred hcCCEEEEeccccccc--ccccC-CCCCccEEEeccccccCCCC--cEEEEEecCCCCcccceecCCCccccccccCcch
Q psy15216 164 SKGVIFHCDAAQAVGK--IDINI-QNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLAT 238 (2602)
Q Consensus 164 ~~g~~livD~a~a~g~--~~~dl-~~~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~ 238 (2602)
++|+++|+|++|+... ....+ ...+.++++.|+||.+|++| +||+++++++++.+.... ..++++.
T Consensus 177 ~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~---------~~~~~~~ 247 (360)
T 3hdo_A 177 RCAGMLVLDETYAEFAESNALELVRRHENVVVTRTLSKSYSLAGMRIGLAIARPEVIAALDKIR---------DHYNLDR 247 (360)
T ss_dssp HBSSEEEEECTTGGGSSCCCTHHHHHCSSEEEEEESTTTTSCTTSCCEEEECCHHHHHHHHHHS---------CSCCSCH
T ss_pred HCCCEEEEECChHhhCCcchhHHhccCCCEEEEecchHhhcCCccceeeEeeCHHHHHHHHHhC---------CCCCCCH
Confidence 9999999999997421 11111 12345688899999888776 799999887766665433 1246777
Q ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcccChhHHHHHh--CCeEEc
Q psy15216 239 HQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDIAVS 316 (2602)
Q Consensus 239 ~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~v~ 316 (2602)
....++.++|+. ..++++..+++.++++++.+.|.+ . ++.+..+. ...+.+.++..+..++...| +||.++
T Consensus 248 ~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~l~~~L~~-~-~~~~~~~~----~~~~~~~~~~~~~~~l~~~l~~~gi~v~ 320 (360)
T 3hdo_A 248 LAQAACVAALRD-QAYLSECCRRIRETREWFTTELRS-I-GYDVIPSQ----GNYLFATPPDRDGKRVYDGLYARKVLVR 320 (360)
T ss_dssp HHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHH-T-TCEECCCS----SSEEEEECTTCCHHHHHHHHHHTTEECB
T ss_pred HHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHH-C-CCEEcCCC----ccEEEEECCCCCHHHHHHHHHHCCEEEE
Confidence 777777788874 445788899999999999999987 4 77765332 23344555555677777777 799998
Q ss_pred ccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 317 SGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 317 ~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
++.... ..+++||+++ +.+|+++++++|++.
T Consensus 321 ~~~~~~-------------------~~~~iRis~~---~~~e~~~l~~al~~~ 351 (360)
T 3hdo_A 321 HFSDPL-------------------LAHGMRISIG---TREEMEQTLAALKEI 351 (360)
T ss_dssp CCCSTT-------------------TTTSEEEECC---CHHHHHHHHHHHHHH
T ss_pred ECCCCC-------------------CCCEEEEEcC---CHHHHHHHHHHHHHH
Confidence 765411 1378999998 899999999999963
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.4e-24 Score=273.14 Aligned_cols=314 Identities=14% Similarity=0.093 Sum_probs=241.5
Q ss_pred eeeeccC--CCCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHH
Q psy15216 1394 TNIVFKD--ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAI 1471 (2602)
Q Consensus 1394 ~~v~L~~--~~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al 1471 (2602)
..+.++. ...+.++.+.+++.+.+.....+|. ....++|+++++++|+++++|++|+|+|+|++.++
T Consensus 17 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~y~~-----------~~~~~l~~~la~~~~~~~~~i~~~~g~~~a~~~~~ 85 (354)
T 3ly1_A 17 NPIRINFNENPLGMSPKAQAAARDAVVKANRYAK-----------NEILMLGNKLAAHHQVEAPSILLTAGSSEGIRAAI 85 (354)
T ss_dssp SCEECSSCCCSSCCCHHHHHHHHHTGGGTTSCCH-----------HHHHHHHHHHHHHTTSCGGGEEEESHHHHHHHHHH
T ss_pred ceEEccCCCCCCCCCHHHHHHHHHHHhhCcCCCC-----------CchHHHHHHHHHHhCCChHHEEEeCChHHHHHHHH
Confidence 3455542 3346788999999988875333332 24678999999999998899999999999999999
Q ss_pred HhhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhcc--CCceEEEEecccccccccc
Q psy15216 1472 KGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKIC--SDTILVSVMLVNNEIGVIQ 1549 (2602)
Q Consensus 1472 ~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~--~~t~lv~l~~~~n~tG~~~ 1549 (2602)
.++. ++||+|+++.++|+++...++.. |++++.++.++++.+|+++|+++++ +++++|++++|+||||.++
T Consensus 86 ~~l~----~~gd~vl~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~v~l~~p~nptG~~~ 158 (354)
T 3ly1_A 86 EAYA----SLEAQLVIPELTYGDGEHFAKIA---GMKVTKVKMLDNWAFDIEGLKAAVAAYSGPSIVYLVNPNNPTGTIT 158 (354)
T ss_dssp HHHC----CTTCEEEEESSSCTHHHHHHHHT---TCEEEEECCCTTSCCCHHHHHHHHHTCSSCEEEEEESSCTTTCCCC
T ss_pred HHHh----CCCCeEEECCCCchHHHHHHHHc---CCEEEEecCCCCCCCCHHHHHHHhccCCCCCEEEEeCCCCCcCCCc
Confidence 9986 89999999999999987666554 9999999998888899999999998 8999999999999999999
Q ss_pred ChHHHHHHhhh--cCCEEEEecccccCcccc---c----CCCC-CccEEEEccccccCCCc--eEEEEEecCCCCccccc
Q psy15216 1550 PILEIGELCRS--KGVIFHCDAAQAVGKIDI---N----IQNY-KVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQ 1617 (2602)
Q Consensus 1550 ~l~~I~~ia~~--~gi~vivD~a~~~g~~~~---~----l~~~-~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~ 1617 (2602)
|+++|.++++. ||+++|+|++|+.....- . +... +.++++.|+||.+|++| +|++++++++++.+...
T Consensus 159 ~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~ 238 (354)
T 3ly1_A 159 PADVIEPWIASKPANTMFIVDEAYAEFVNDPRFRSISPMITQGAENIILLKTFSKIHAMAGMRVGYAVAHPTVIALMGRY 238 (354)
T ss_dssp CHHHHHHHHHTCCTTEEEEEECTTGGGCCCTTCCCSHHHHHTTCSSEEEEEESSSTTCCGGGCCEEEECCHHHHHHHGGG
T ss_pred CHHHHHHHHHhCCCCeEEEEeccHHHhccccccCCHHHHhhhcCCCEEEEeeChhhccChhhhheeeecCHHHHHHHHHh
Confidence 98888888877 999999999987433211 1 1222 55689999999888766 79999987766655543
Q ss_pred cccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecC
Q psy15216 1618 IHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI 1697 (2602)
Q Consensus 1618 ~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~ 1697 (2602)
. ..++++...+.++.++|+.. ..+++.++++.++++++.+.|.+ . ++.+..+ . .....+.++.
T Consensus 239 ~---------~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~l~~~l~~-~-~~~~~~~-~---~~~~~~~~~~- 301 (354)
T 3ly1_A 239 V---------AGEKINFSGVDAALASMNDS-AFITYSKKSNDVSRQILLKALED-L-KLPYLPS-E---GNFVFHQLVV- 301 (354)
T ss_dssp T---------TCSCCCHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHHHHHHH-H-TCCBCCC-C---SSEEEEECSS-
T ss_pred c---------CCCCCCHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHHHHHHHHH-C-CCeECCC-C---ceEEEEECCC-
Confidence 2 12467777777777777733 55788889999999999999987 2 5544422 1 2233333333
Q ss_pred CcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1698 EGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1698 ~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
+..++...| +||.++ |..+.. .+++||+++ +.+|+++++++|++.
T Consensus 302 ~~~~~~~~l~~~gi~v~-g~~~~~-------------------~~~iRis~~---~~~~i~~~~~~l~~~ 348 (354)
T 3ly1_A 302 PLKDYQTHMADAGVLIG-RAFPPA-------------------DNWCRISLG---TPQEMQWVADTMREF 348 (354)
T ss_dssp CHHHHHHHHHHTTEECC-CCCTTC-------------------TTEEEEECC---CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCEEEe-ecCCCC-------------------CCEEEEEcC---CHHHHHHHHHHHHHH
Confidence 556666666 899988 654432 289999987 889999999999973
|
| >1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=7.5e-25 Score=291.82 Aligned_cols=332 Identities=17% Similarity=0.184 Sum_probs=248.4
Q ss_pred CCCCCHHHHHHHHHHHhhcc--CCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCc----EEEeCCHHHHHHHHHHhhh
Q psy15216 1402 TTPIDPRVVDKMIPYLRVQF--GNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE----IIWTSGATESNNLAIKGAA 1475 (2602)
Q Consensus 1402 ~~~~~~~v~eal~~~l~~~~--~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~----iv~t~gaT~al~~al~~l~ 1475 (2602)
..+.++.+++++.+.+.+.+ ++|+++.|..+....++.+.+++++++++|+++++ |++++|+ +++..++.++.
T Consensus 53 e~~~~~~V~eA~~~~l~~~~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~~g~~~~~~~~~V~~~sGs-~an~~~~~all 131 (483)
T 1rv3_A 53 ENFASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGS-PANFAVYTALV 131 (483)
T ss_dssp CCCCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHH-HHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHhccCcccCCCccccCcchhHHHHHHHHHHHHHHHhCCCcccCceEEEECCcH-HHHHHHHHHhc
Confidence 34678899999999988765 67876556555666778889999999999998654 6666666 88888788876
Q ss_pred hhhccCCCEEEEcCCCCcchHHHHHHH-----HhCC--cEEEEeccC-CCCCcChhHHHhhcc-CCceEEEEeccccccc
Q psy15216 1476 HFYKKRGKHIITVQTEHKSVLDSIRKL-----ENDG--FRVTYLKPK-NNGLITLSQLEEKIC-SDTILVSVMLVNNEIG 1546 (2602)
Q Consensus 1476 ~~~~~~gd~Vlv~~~~~~s~~~~~~~~-----~~~G--~~v~~v~~~-~~~~id~d~l~~~i~-~~t~lv~l~~~~n~tG 1546 (2602)
+|||+|++++++|+++...+... ...| .+++.++++ .++.+|+++|+++++ ++|++|++ +++|++
T Consensus 132 ----~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~v~~~~~~~~~~iD~d~le~~i~~~~tklIi~-~~sn~~- 205 (483)
T 1rv3_A 132 ----EPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIA-GTSCYS- 205 (483)
T ss_dssp ----CTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEEE-CCSSCC-
T ss_pred ----CCCCEEEEecCccCcCcchhhhhcccCcccccceEEEEECccccCCCcCCHHHHHHHHhhcCCcEEEE-eCCcCC-
Confidence 89999999999999986533111 0013 455555556 468899999999998 89999999 999998
Q ss_pred cccChHHHHHHhhhcCCEEEEecccccCcccccCCCC---CccEEEEcccc-ccCCCceEEEEEecCCCCccccccccCC
Q psy15216 1547 VIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNY---KVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGG 1622 (2602)
Q Consensus 1547 ~~~~l~~I~~ia~~~gi~vivD~a~~~g~~~~~l~~~---~~D~~v~S~~K-~~gp~G~G~l~~~~~~~~~l~~~~~g~~ 1622 (2602)
.++|+++|.++|++||+++++|++|+.|....++... ++|++++|+|| +.||+| |+++++++... +. ...|+.
T Consensus 206 ~~~dl~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p~~~~div~~s~~K~l~Gprg-G~i~~~~~~~~-~~-~~~g~~ 282 (483)
T 1rv3_A 206 RNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTLRGCRA-GMIFYRRGVRS-VD-PKTGKE 282 (483)
T ss_dssp SCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGGTCSEEEEESSGGGCCCSC-EEEEEECSBCC---------C
T ss_pred CcCCHHHHHHHHHHcCCEEEEEccchhcccccCCCCCCCCCCcEEEecCcccCCCCCc-eEEEEcchhhh-hc-cccCcc
Confidence 8999999999999999999999999987766555544 68999999999 679998 99999987442 21 000000
Q ss_pred ----c-------cccCCCCCcchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceE
Q psy15216 1623 ----H-------EYGLRSGTLATHQIVGMGEAFRLAR-IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNL 1690 (2602)
Q Consensus 1623 ----~-------~~~~~~gt~~~~~~~al~~aL~~~~-~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~ 1690 (2602)
. ......|+++.+.+.++.+|+.... .+++.+.+++.++++++.+.|.+ . |+.+..+.. .....
T Consensus 283 ~~y~~~~~~~~~~~~~~~g~~~~~~iaal~~Al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~--~~~~~ 358 (483)
T 1rv3_A 283 ILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVE-L-GYKIVTGGS--DNHLI 358 (483)
T ss_dssp CBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH-T-TCEEGGGSC--SSSEE
T ss_pred hhhHHHHHhhhhcCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHh-c-CCEeccCCC--CCceE
Confidence 0 0112257888999999999998653 56788999999999999999988 4 888875422 12334
Q ss_pred EEEEec--CCcHHHHHhc--CCEEEc----cccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCC----HHHHHHH
Q psy15216 1691 NISFNF--IEGESLLMAI--KDIAVS----SGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTT----EKEIDFT 1758 (2602)
Q Consensus 1691 ~~~~~~--~~~~~~~~~L--~gI~v~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t----~edid~l 1758 (2602)
.+.+.. .+..++...| .||.++ +|..|.. ..+++|||++.++| ++|++++
T Consensus 359 ~v~~~~~g~~~~~~~~~L~~~gI~v~~~~~pg~~~~~------------------~~~~iRis~~~~~t~g~~~edi~~~ 420 (483)
T 1rv3_A 359 LVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSAL------------------RPSGLRLGTPALTSRGLLEKDFQKV 420 (483)
T ss_dssp EEEGGGGTCCHHHHHHHHHHTTEECEEECCSSCSCTT------------------SCCEEEEECHHHHHTTCCHHHHHHH
T ss_pred EEeccCCCCCHHHHHHHHHhCCcEEecCCCCCCCcCC------------------CCceEEeecCCcccCCCCHHHHHHH
Confidence 444432 3455565555 799988 6653321 13789999998777 9999999
Q ss_pred HHHHHHh
Q psy15216 1759 IKLLKMK 1765 (2602)
Q Consensus 1759 i~~L~~~ 1765 (2602)
+++|++.
T Consensus 421 ~~~l~~~ 427 (483)
T 1rv3_A 421 AHFIHRG 427 (483)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999874
|
| >3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-24 Score=281.59 Aligned_cols=318 Identities=14% Similarity=0.122 Sum_probs=242.0
Q ss_pred cCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHH
Q psy15216 25 FGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIR 104 (2602)
Q Consensus 25 ~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~ 104 (2602)
++++.. +..+....+.++++++.+++++|++ +.++|++|+|+|+++++..+ .+||+|++++++|+++. +..
T Consensus 21 ~~~~~~--~h~~~~~~~~~~~~~~~l~~~~~~~-~~v~~~~sgt~a~~~~~~~~-----~~gd~vi~~~~~~~~~~-~~~ 91 (379)
T 3ke3_A 21 YTDRAL--NHMSKAFQEVMNDLLSNLKTVYNAE-AAVIIPGSGTYGMEAVARQL-----TIDEDCLIIRNGWFSYR-WTQ 91 (379)
T ss_dssp CCTTSC--CTTSHHHHHHHHHHHHHHHHHHTCS-EEEEEESCHHHHHHHHHHHH-----CTTCEEEEEECSHHHHH-HHH
T ss_pred ccCCCC--CCCCHHHHHHHHHHHHHHHHHhCCC-CEEEEcCChhHHHHHHHHhC-----CCCCeEEEEeCCchhHH-HHH
Confidence 445543 3335667789999999999999987 68999999999999987554 48999999999998853 333
Q ss_pred HHHhCC--cEEEEeccCCC---------CccChHHHHhhcc-CCceEEEEecccCccccccc---HHHHHHHHHhcCCEE
Q psy15216 105 KLENDG--FRVTYLKPKNN---------GLITLSQLEEKIC-SDTILVSVMLVNNEIGVIQP---ILEIGELCRSKGVIF 169 (2602)
Q Consensus 105 ~~~~~G--~~v~~v~~~~~---------~~ld~e~l~~~i~-~~tklv~i~~~~npTG~~~~---l~~I~~la~~~g~~l 169 (2602)
.++..| .+++.++.+.. +.+|+++++++++ +++++|++++++|+||.+.| +++|.++||+||+++
T Consensus 92 ~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~l 171 (379)
T 3ke3_A 92 ILEKGKFAKSSTVLTAERTEDTEAPKPFAPVDIETAVAKIKEDKSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLL 171 (379)
T ss_dssp HHHHHCCSSEEEEEECEESSCCSSCCCEECCCHHHHHHHHHHHTCSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEE
T ss_pred HHHHhCCCCceEEEeccccccccccCCCCCCCHHHHHHHHhhcCCcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEE
Confidence 344445 57888876431 2589999999995 58999999999999999999 999999999999999
Q ss_pred EEecccccccccccCCCCCccEEEecccc-ccCCCCcEEEEEecCCCCcccceecCCCc-------------ccc--ccc
Q psy15216 170 HCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGH-------------EYG--LRS 233 (2602)
Q Consensus 170 ivD~a~a~g~~~~dl~~~~~D~~~~S~~K-~~Gp~G~G~l~~~~~~~~~l~~~~~g~~~-------------~~~--~~~ 233 (2602)
|+|++|+ |..++++..+++|++++|+|| +.||+|+|++++++++++.+.+....... +.+ ...
T Consensus 172 i~D~~~~-g~~~~~~~~~~~d~~~~s~~K~l~~~~g~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 250 (379)
T 3ke3_A 172 VIDCIAS-GCVWLDMKELGIDVLISAPQKGWSSTPCAGLVMLSAAAIKKVESTESNCFSLDLKQWLTIMRAYENGGHAYH 250 (379)
T ss_dssp EEECTTC-TTCCCCHHHHTCSEEEECTTTTTCSCCCEEEEEECHHHHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSCCCS
T ss_pred EEEeccc-CCccccccccCCCEEEecchhhcCCCCceEEEEECHHHHHhhhcCCCCceeecHHHHHHHHHhhhccCCCCC
Confidence 9999999 888888887889999999999 56788999999998876655442111100 001 113
Q ss_pred cCcchhHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcccChhHHHHHh--
Q psy15216 234 GTLATHQIVGMGEAFRLAR-IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI-- 310 (2602)
Q Consensus 234 gt~~~~~~~al~~al~~~~-~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L-- 310 (2602)
+|+++..++++.+|+++.. .+++++.++..++++++++.|.+ .|++++.++..+.+.+..+..+..+. .+...|
T Consensus 251 ~t~~~~~~~a~~aal~~~~~~g~~~~~~~~~~l~~~l~~~l~~--~g~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~L~~ 327 (379)
T 3ke3_A 251 ATMPTDSLRQFRDAILEAKEIGFDILRDAQWELGNRVRKVLTD--KGIESVAAEGFEAPGVVVSYTERDDM-HKGSAFAE 327 (379)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH--TTCCBSBCTTCBCSSEEEEECSCHHH-HSSHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH--cCCEecCCccccCceEEEEccCCcch-HHHHHHHH
Confidence 5899999999999999654 45899999999999999999988 37777665544445444443332111 112333
Q ss_pred CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 311 KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 311 ~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
+||.+++|.+|..+. ....+.+|||++.++|++||++++++|++.
T Consensus 328 ~Gi~v~~g~~~~~~~--------------~~~~~~lRis~~~~~t~~di~~~~~~l~~~ 372 (379)
T 3ke3_A 328 AGLQIAAGVPLKVGE--------------PDNFKTFRLGLFGLDKLTDIDGTVERFEKA 372 (379)
T ss_dssp TTCCCEECCCCSSCC--------------CTTCCEEEEECCSHHHHTCHHHHHHHHHHH
T ss_pred CCeEEeCCccccccc--------------cCcCCEEEEeCCcCCCHHHHHHHHHHHHHH
Confidence 799999887765320 011378999999999999999999999864
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=7.4e-24 Score=272.23 Aligned_cols=280 Identities=18% Similarity=0.176 Sum_probs=219.1
Q ss_pred HHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCC-CEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCC
Q psy15216 43 IEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRG-KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN 121 (2602)
Q Consensus 43 ~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~g-d~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~ 121 (2602)
..++|+++|+++|+++++|++++|+++++++++.++. ++| |+|+++.|+|+++...+... |++++.++.+++
T Consensus 60 ~~~lr~~la~~~~~~~~~v~~~~G~~~ai~~~~~~~~----~~g~d~Vl~~~p~~~~~~~~~~~~---g~~~~~v~~~~~ 132 (356)
T 1fg7_A 60 PKAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAFC----EPGKDAILYCPPTYGMYSVSAETI---GVECRTVPTLDN 132 (356)
T ss_dssp CHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHC----CTTTCEEEECSSSCTHHHHHHHHH---TCEEEECCCCTT
T ss_pred HHHHHHHHHHHhCCChHHEEEcCCHHHHHHHHHHHHh----CCCCCEEEEeCCChHHHHHHHHHc---CCEEEEeeCCCC
Confidence 4678999999999988999999999999999999987 789 99999999999988877766 999999998877
Q ss_pred CccChHHHHhhccCCceEEEEecccCcccccccHHHHHH---HHHhcCCEEEEeccccccccc---ccC-CCCCccEEEe
Q psy15216 122 GLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGE---LCRSKGVIFHCDAAQAVGKID---INI-QNYKVDLMSF 194 (2602)
Q Consensus 122 ~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~---la~~~g~~livD~a~a~g~~~---~dl-~~~~~D~~~~ 194 (2602)
+.+|+++++++++ ++++|++++|+||||.++|.++|.+ +|+ +|+++|+|++|+..... .++ ...+.++++.
T Consensus 133 ~~~d~~~l~~~i~-~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~ 210 (356)
T 1fg7_A 133 WQLDLQGISDKLD-GVKVVYVCSPNNPTGQLINPQDFRTLLELTR-GKAIVVADEAYIEFCPQASLAGWLAEYPHLAILR 210 (356)
T ss_dssp SCCCHHHHHTSCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSGGGCSGGGTTTCTTEEEEE
T ss_pred CCCCHHHHHHHhc-CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-CCCEEEEEccchhhcCCCcHHHHHhhCCCEEEEe
Confidence 7899999999998 8999999999999999999666554 455 89999999999854311 222 3345678999
Q ss_pred ccccccCCCC--cEEEEEecCCCCcccceecCCCccccccccCcchhHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHH
Q psy15216 195 SAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLAR-IEMKEELKRILFLQKRLYN 271 (2602)
Q Consensus 195 S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~-~~~~~~~~~~~~l~~~l~~ 271 (2602)
|+||.+|++| +||+++++++++.+.+... .++++.....++.++|+... .++++..++++++++++.+
T Consensus 211 s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~---------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 281 (356)
T 1fg7_A 211 TLSKAFALAGLRCGFTLANEEVINLLMKVIA---------PYPLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIA 281 (356)
T ss_dssp ESSSTTCCGGGCCEEEEECHHHHHHHHHHSC---------SSCSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHhhcCchhhhEEEEeCHHHHHHHHHhcC---------CCCCCHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHH
Confidence 9999999888 7999998877666654321 22566666666666765321 2377888899999999999
Q ss_pred HHhhccCceEEeCCCCCCCCceEEEEEcccChhHHHHHh--CCeEEcc-cccCCCCCCChHHHHHHcCCCccCCCCeEEE
Q psy15216 272 GLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDIAVSS-GSACTSASLEPSYVLRALGCNDELAHSSIRF 348 (2602)
Q Consensus 272 ~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~v~~-g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi 348 (2602)
.|.+ ++++....+.. ..++.+.++ +..++.+.| +||.+++ |..|.. .+++||
T Consensus 282 ~L~~-~~~~~~~~~~~---~~~~~~~~~--~~~~l~~~L~~~gI~v~~~g~~~~~-------------------~~~iRi 336 (356)
T 1fg7_A 282 ALKE-IPCVEQVFDSE---TNYILARFK--ASSAVFKSLWDQGIILRDQNKQPSL-------------------SGCLRI 336 (356)
T ss_dssp HHHH-STTEEEECCCS---SSEEEEEET--THHHHHHHHHHTTEECEECTTSTTC-------------------TTEEEE
T ss_pred HHHh-CCCceEECCCC---CeEEEEECC--CHHHHHHHHHHCCEEEEECCCCCCC-------------------CCeEEE
Confidence 9987 56543333322 234445554 566677666 7999998 765532 268999
Q ss_pred ecCCCCCHHHHHHHHHHHHh
Q psy15216 349 TIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 349 s~~~~~t~edid~li~~L~~ 368 (2602)
+++ +++|+++++++|++
T Consensus 337 s~~---~~~e~~~~~~~l~~ 353 (356)
T 1fg7_A 337 TVG---TREESQRVIDALRA 353 (356)
T ss_dssp ECC---CHHHHHHHHHHHHT
T ss_pred EeC---CHHHHHHHHHHHHh
Confidence 998 78999999999985
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=7.6e-24 Score=276.21 Aligned_cols=314 Identities=13% Similarity=0.117 Sum_probs=237.7
Q ss_pred CCCHHHHHHHHHHHhhhc-CCCCCCCcchhhhHHHHHHHHHHHHHHHh----C--CCCCc-EEEeCCHHHHHHHHHHhcc
Q psy15216 8 PIDPRVVDKMIPYLRVQF-GNPASRNHIYGWTAEKAIEKARNEVAQLI----Y--ADPRE-IIWTSGATESNNLAIKGAA 79 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~-~~p~~~~~~~~~~~~~~~~~~r~~lA~~~----g--~~~~~-Iv~t~g~T~al~~~~~~l~ 79 (2602)
++++.+.+++.+.+.... .++.. . ...++|+.+++++ | +++++ |++|+|+++|+.+++.++.
T Consensus 39 ~~~~~v~~a~~~~~~~~~~~y~~~------~----g~~~l~~~la~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~ 108 (389)
T 1gd9_A 39 DTPQHIKEYAKEALDKGLTHYGPN------I----GLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFL 108 (389)
T ss_dssp CCCHHHHHHHHHHHHTTCCSCCCT------T----CCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHHHHTTTC
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCC------C----CcHHHHHHHHHHHHHHhCCCCCCCCeEEEcCChHHHHHHHHHHhC
Confidence 468899999998886521 12111 1 1345566666665 8 46788 9999999999999999987
Q ss_pred cccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCC--CCccChHHHHhhccCCceEEEEecccCccccccc---
Q psy15216 80 HFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP--- 154 (2602)
Q Consensus 80 ~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~--- 154 (2602)
++||+|+++.++|+++...+... |++++.++.++ ++.+|+++|++++++++++|++++|+||||.++|
T Consensus 109 ----~~gd~vl~~~~~~~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~ 181 (389)
T 1gd9_A 109 ----KDGEEVLIPTPAFVSYAPAVILA---GGKPVEVPTYEEDEFRLNVDELKKYVTDKTRALIINSPCNPTGAVLTKKD 181 (389)
T ss_dssp ----CTTCEEEEEESCCTTHHHHHHHH---TCEEEEEECCGGGTTCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHH
T ss_pred ----CCCCEEEEcCCCchhHHHHHHHC---CCEEEEeccCCccCCCCCHHHHHHhcCcCceEEEEECCCCCCCcCCCHHH
Confidence 79999999999999988777665 99999999875 4578999999999989999999999999999996
Q ss_pred HHHHHHHHHhcCCEEEEecccccccc----cccCCC----CCccEEEeccccccCCCC--cEEEEEecCCCCcccceecC
Q psy15216 155 ILEIGELCRSKGVIFHCDAAQAVGKI----DINIQN----YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHG 224 (2602)
Q Consensus 155 l~~I~~la~~~g~~livD~a~a~g~~----~~dl~~----~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g 224 (2602)
+++|+++|++||+++|+|++|+.+.. +..+.. .+.|+++.|+||.+|++| +||+++++++++.+.+...+
T Consensus 182 l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~ 261 (389)
T 1gd9_A 182 LEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLGFVAAPSWIIERMVKFQMY 261 (389)
T ss_dssp HHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGGCCEEEECCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccCCCCCEEEEecChhhcCCcccceEEEEECHHHHHHHHHHHhh
Confidence 88899999999999999999986543 122222 357899999999999888 79999998777666544321
Q ss_pred CCccccccccCcchhHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEc--c
Q psy15216 225 GGHEYGLRSGTLATHQIVGMGEAFRLARI--EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN--F 300 (2602)
Q Consensus 225 ~~~~~~~~~gt~~~~~~~al~~al~~~~~--~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~--~ 300 (2602)
..++++.....++.++|+.... ++++..++++++++++.+.|.+ . ++.+..+.. +....+.++ .
T Consensus 262 -------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~---~~~~~~~~~~~~ 329 (389)
T 1gd9_A 262 -------NATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNE-M-GLPTVKPKG---AFYIFPRIRDTG 329 (389)
T ss_dssp -------TTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHH-T-TCCCCCCCB---TTEECCBCGGGT
T ss_pred -------hccCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHH-c-CCeecCCCe---eeEEEEeccCCC
Confidence 1245666666667677774333 6788899999999999999987 4 666554322 222333444 2
Q ss_pred cChhHHHHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 301 IEGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 301 ~~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
.+..++...| +||.+++|..|.+. ..+++||+++. +++++++++++|++.
T Consensus 330 ~~~~~~~~~l~~~~gi~v~~g~~~~~~-----------------~~~~iRi~~~~--~~~~i~~~l~~l~~~ 382 (389)
T 1gd9_A 330 LTSKKFSELMLKEARVAVVPGSAFGKA-----------------GEGYVRISYAT--AYEKLEEAMDRMERV 382 (389)
T ss_dssp CCHHHHHHHHHHHTCEECEEGGGGCGG-----------------GTTBEEEECCS--CHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCEEEeCchhhCCC-----------------CCCeEEEEecC--CHHHHHHHHHHHHHH
Confidence 3556666665 69999998876431 13789999984 899999999999863
|
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=8.9e-24 Score=274.85 Aligned_cols=312 Identities=14% Similarity=0.096 Sum_probs=232.1
Q ss_pred CCCCHHHHHHHHHHHhhc-cCCCCCccchhHHHHHHHHHHHHHHHHHHh----C--CCCCcEEEeCCHHHHHHHHHHhhh
Q psy15216 1403 TPIDPRVVDKMIPYLRVQ-FGNPASRNHIYGWTAEKAIEKARNEVAQLI----Y--ADPREIIWTSGATESNNLAIKGAA 1475 (2602)
Q Consensus 1403 ~~~~~~v~eal~~~l~~~-~~np~~~~~~~~~~~~~~~~~lr~~ia~~~----g--~~~~~iv~t~gaT~al~~al~~l~ 1475 (2602)
.+.++.+.+++.+.+... ..++.. ....++|+.+++++ | +++++|++|+|+++|+++++.++.
T Consensus 43 ~~~~~~v~~a~~~~~~~~~~~y~~~----------~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~~al~~~~~~l~ 112 (385)
T 1b5p_A 43 FDTPEHVKEAARRALAQGKTKYAPP----------AGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAIL 112 (385)
T ss_dssp SCCCHHHHHHHHHHHHTTCCSCCCT----------TCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHhcCCCCCCCC----------CCCHHHHHHHHHHHHHHhCCCCChHHEEEcCChHHHHHHHHHHhc
Confidence 355678889988887642 122221 11346677777766 4 367899999999999999999986
Q ss_pred hhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCC--CCCcChhHHHhhccCCceEEEEeccccccccccC---
Q psy15216 1476 HFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP--- 1550 (2602)
Q Consensus 1476 ~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~--- 1550 (2602)
++||+|++++|+|+++...+... |++++.++.++ ++.+|+++|++++++++++|++++|+||||.++|
T Consensus 113 ----~~gd~Vlv~~p~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~NPtG~~~~~~~ 185 (385)
T 1b5p_A 113 ----DPGDEVIVLSPYWVSYPEMVRFA---GGVVVEVETLPEEGFVPDPERVRRAITPRTKALVVNSPNNPTGAVYPKEV 185 (385)
T ss_dssp ----CTTCEEEEEESCCTHHHHHHHHT---TCEEEEEECCGGGTTCCCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHH
T ss_pred ----CCCCEEEEcCCCchhHHHHHHHc---CCEEEEeecCcccCCCCCHHHHHHhcCCCCEEEEEeCCCCCCCCCcCHHH
Confidence 89999999999999887766554 99999999875 5679999999999999999999999999999988
Q ss_pred hHHHHHHhhhcCCEEEEecccccCcc---cccCCCC--CccEEEEccccccCCCc--eEEEEEecCCCCccccccccCCc
Q psy15216 1551 ILEIGELCRSKGVIFHCDAAQAVGKI---DINIQNY--KVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGH 1623 (2602)
Q Consensus 1551 l~~I~~ia~~~gi~vivD~a~~~g~~---~~~l~~~--~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~~g~~~ 1623 (2602)
+++|+++|++||+++|+|++|+.... ..++..+ +.++++.|+||.+|++| +||+++++++++.+.+....
T Consensus 186 l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~~~~~~~~~~~l~~~~~~--- 262 (385)
T 1b5p_A 186 LEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFAMTGWRIGYACGPKEVIKAMASVSRQ--- 262 (385)
T ss_dssp HHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTTTEEEEEESTTTTTCGGGCCEEEECCHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHcCCEEEEEccchhcccCCCCCCHHHcCCCCEEEEEechhhcCCcccceEEEEeCHHHHHHHHHHHhh---
Confidence 88999999999999999999875332 1122222 56788999999999888 89999987766655543211
Q ss_pred cccCCCCCcchhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEe--cCC
Q psy15216 1624 EYGLRSGTLATHQIVGMGEAFRL---ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN--FIE 1698 (2602)
Q Consensus 1624 ~~~~~~gt~~~~~~~al~~aL~~---~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~--~~~ 1698 (2602)
...+++...+.++.++|+. ....+++.++++.++++++.+.|.+ . ++.+..+... ....+.++ +.+
T Consensus 263 ----~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~---~~~~~~~~~~~~~ 333 (385)
T 1b5p_A 263 ----STTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTA-L-GLKAVRPSGA---FYVLMDTSPIAPD 333 (385)
T ss_dssp ----TTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-TCCBCCCSBT---TEEEEECTTTCSS
T ss_pred ----ccCCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHH-C-CCeecCCCee---EEEEEecCCCCCC
Confidence 1124455555556667753 3455778889999999999999987 3 6655433221 11222332 235
Q ss_pred cHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1699 GESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1699 ~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
..++...| +||.+++|..|... +++|||++ ++.+++++++++|++
T Consensus 334 ~~~l~~~l~~~gv~v~~g~~f~~~-------------------~~iRis~~--~~~~~i~~~l~~l~~ 380 (385)
T 1b5p_A 334 EVRAAERLLEAGVAVVPGTDFAAF-------------------GHVRLSYA--TSEENLRKALERFAR 380 (385)
T ss_dssp HHHHHHHHHHTTEECEESGGGTCT-------------------TEEEEECC--SCHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHCCeEEecccccCCC-------------------CeEEEEec--CCHHHHHHHHHHHHH
Confidence 56676666 79999999877432 78999988 789999999999886
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-23 Score=267.50 Aligned_cols=310 Identities=15% Similarity=0.147 Sum_probs=236.5
Q ss_pred eceeeeccCC--CCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHH
Q psy15216 1392 PYTNIVFKDA--TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNL 1469 (2602)
Q Consensus 1392 P~~~v~L~~~--~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~ 1469 (2602)
+...++|+.+ ..++++.+.+++.+.+.....+|+. ...++|+++++++|+++++|++|+|+++++++
T Consensus 15 ~~~~i~l~~n~~~~~~~~~v~~a~~~~~~~~~~y~~~-----------~~~~lr~~la~~~~~~~~~i~~t~G~~~~l~~ 83 (337)
T 3p1t_A 15 AAQAVCLAFNENPEAVEPRVQAAIAAAAARINRYPFD-----------AEPRVMRKLAEHFSCPEDNLMLVRGIDECFDR 83 (337)
T ss_dssp CCCCEECSSCCCCSCCCHHHHHHHHHHGGGTTSCCTT-----------HHHHHHHHHHHHHTSCGGGEEEESHHHHHHHH
T ss_pred CCCceEeeCCCCCCCCCHHHHHHHHHhhhhhccCCCC-----------chHHHHHHHHHHhCcCHHHEEEeCCHHHHHHH
Confidence 4455667543 3467889999999988764444432 36789999999999988899999999999999
Q ss_pred HHHhhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccCCceEEEEecccccccccc
Q psy15216 1470 AIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQ 1549 (2602)
Q Consensus 1470 al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~ 1549 (2602)
++.++ +||+|++++|+|+++...++ ..|++++.++.++++.+|+++++++ .+++++++++|+||||.++
T Consensus 84 ~~~~~------~gd~vl~~~p~~~~~~~~~~---~~g~~~~~v~~~~~~~~d~~~l~~~--~~~~~v~i~~p~nptG~~~ 152 (337)
T 3p1t_A 84 ISAEF------SSMRFVTAWPGFDGYRARIA---VSGLRHFEIGLTDDLLLDPNDLAQV--SRDDCVVLANPSNPTGQAL 152 (337)
T ss_dssp HHHHS------TTSEEEEESSSCSHHHHHHT---TSCCEEEEECBCTTSSBCHHHHTTC--CTTEEEEEESSCTTTCCCC
T ss_pred HHHhc------CCCeEEEeCCCcHHHHHHHH---HcCCEEEEecCCCCCCCCHHHHHhh--cCCCEEEEeCCCCCCCCCC
Confidence 98875 79999999999999776554 4499999999988888999999987 5789999999999999999
Q ss_pred ChHHHHHHhhhcCCEEEEeccccc--CcccccCCCCCccEEEEccccccCCCc--eEEEEEecCCCCccccccccCCccc
Q psy15216 1550 PILEIGELCRSKGVIFHCDAAQAV--GKIDINIQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEY 1625 (2602)
Q Consensus 1550 ~l~~I~~ia~~~gi~vivD~a~~~--g~~~~~l~~~~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~ 1625 (2602)
|+++|.++|+++++ +++|++|+. +..+......+.++++.|+||.+|++| +||+++++++++.+....
T Consensus 153 ~~~~l~~l~~~~~~-~ivDea~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~~~l~~~~------- 224 (337)
T 3p1t_A 153 SAGELDQLRQRAGK-LLIDETYVDYSSFRARGLAYGENELVFRSFSKSYGLAGLRLGALFGPSELIAAMKRKQ------- 224 (337)
T ss_dssp CHHHHHHHHHHCSE-EEEECTTGGGSSCSSSCCCCBTTEEEEEESSSTTCCTTTCCEEEECCHHHHHHHHTTS-------
T ss_pred CHHHHHHHHHhCCc-EEEECCChhhccccccccccCCCEEEEeeCchhccCcchheEEEEeCHHHHHHHHhhc-------
Confidence 99999999999997 566999862 221222233356799999999888777 699999877665554321
Q ss_pred cCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecCCcHHHHHh
Q psy15216 1626 GLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMA 1705 (2602)
Q Consensus 1626 ~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1705 (2602)
..++++...+.++..+++.. ..+.+..++..++++++.+.|.+ . ++.+..+ ...++++...+...+...
T Consensus 225 --~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~------~~~~~~~~~~~~~~~~~~ 293 (337)
T 3p1t_A 225 --WFCNVGTLDLHALEAALDND-RAREAHIAKTLAQRRRVADALRG-L-GYRVASS------EANFVLVENAAGERTLRF 293 (337)
T ss_dssp --CTTCSCHHHHHHHHHHHTCH-HHHHHHHHHHHHHHHHHHHHHHH-T-TCCBCCC------SSSEEEEECTTTHHHHHH
T ss_pred --CCCCCCHHHHHHHHHHhCCH-HHHHHHHHHHHHHHHHHHHHHHH-C-cCEECCC------CCeEEEEEcCCHHHHHHH
Confidence 23466777777776777632 23556667777888999999987 3 6554422 122345555555555555
Q ss_pred c--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1706 I--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1706 L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
| +||.+++|..|..+ +++|+|++ +.+++++++++|++
T Consensus 294 l~~~gi~v~~g~~~~~~-------------------~~iRis~~---~~~~~~~l~~al~~ 332 (337)
T 3p1t_A 294 LRERGIQVKDAGQFGLH-------------------HHIRISIG---REEDNDRLLAALAE 332 (337)
T ss_dssp HHHTTEECEEGGGGTCC-------------------SEEEEECC---CHHHHHHHHHHHHH
T ss_pred HHHCCeEEEECccCCCC-------------------CeEEEecC---CHHHHHHHHHHHHH
Confidence 5 89999999887543 79999988 79999999999987
|
| >3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.2e-24 Score=279.62 Aligned_cols=318 Identities=13% Similarity=0.112 Sum_probs=240.2
Q ss_pred cCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHH
Q psy15216 1421 FGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIR 1500 (2602)
Q Consensus 1421 ~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~ 1500 (2602)
++++.. ++.+..+.+.++++++.+++++|++ +.++||+|+|+|++.++..+ ++||+|++++++|+++. ...
T Consensus 21 ~~~~~~--~h~~~~~~~~~~~~~~~l~~~~~~~-~~v~~~~sgt~a~~~~~~~~-----~~gd~vi~~~~~~~~~~-~~~ 91 (379)
T 3ke3_A 21 YTDRAL--NHMSKAFQEVMNDLLSNLKTVYNAE-AAVIIPGSGTYGMEAVARQL-----TIDEDCLIIRNGWFSYR-WTQ 91 (379)
T ss_dssp CCTTSC--CTTSHHHHHHHHHHHHHHHHHHTCS-EEEEEESCHHHHHHHHHHHH-----CTTCEEEEEECSHHHHH-HHH
T ss_pred ccCCCC--CCCCHHHHHHHHHHHHHHHHHhCCC-CEEEEcCChhHHHHHHHHhC-----CCCCeEEEEeCCchhHH-HHH
Confidence 456643 3346677789999999999999987 67899999999999987543 58999999999998753 223
Q ss_pred HHHhCC--cEEEEeccCCC---------CCcChhHHHhhcc-CCceEEEEeccccccccccC---hHHHHHHhhhcCCEE
Q psy15216 1501 KLENDG--FRVTYLKPKNN---------GLITLSQLEEKIC-SDTILVSVMLVNNEIGVIQP---ILEIGELCRSKGVIF 1565 (2602)
Q Consensus 1501 ~~~~~G--~~v~~v~~~~~---------~~id~d~l~~~i~-~~t~lv~l~~~~n~tG~~~~---l~~I~~ia~~~gi~v 1565 (2602)
.+...| .+++.++.+.. +.+|++++++++. ++|++|++++++|+||.+.| +++|.++|++||+++
T Consensus 92 ~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~l 171 (379)
T 3ke3_A 92 ILEKGKFAKSSTVLTAERTEDTEAPKPFAPVDIETAVAKIKEDKSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLL 171 (379)
T ss_dssp HHHHHCCSSEEEEEECEESSCCSSCCCEECCCHHHHHHHHHHHTCSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEE
T ss_pred HHHHhCCCCceEEEeccccccccccCCCCCCCHHHHHHHHhhcCCcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEE
Confidence 333334 58888876431 2589999999995 58999999999999999999 999999999999999
Q ss_pred EEecccccCcccccCCCCCccEEEEcccc-ccCCCceEEEEEecCCCCccccccccCC-------------cccc--CCC
Q psy15216 1566 HCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGG-------------HEYG--LRS 1629 (2602)
Q Consensus 1566 ivD~a~~~g~~~~~l~~~~~D~~v~S~~K-~~gp~G~G~l~~~~~~~~~l~~~~~g~~-------------~~~~--~~~ 1629 (2602)
|+|++|+ |..++++..+++|++++|+|| +.||+|+|++++++++++.+.+...... .+.+ ...
T Consensus 172 i~D~~~~-g~~~~~~~~~~~d~~~~s~~K~l~~~~g~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 250 (379)
T 3ke3_A 172 VIDCIAS-GCVWLDMKELGIDVLISAPQKGWSSTPCAGLVMLSAAAIKKVESTESNCFSLDLKQWLTIMRAYENGGHAYH 250 (379)
T ss_dssp EEECTTC-TTCCCCHHHHTCSEEEECTTTTTCSCCCEEEEEECHHHHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSCCCS
T ss_pred EEEeccc-CCccccccccCCCEEEecchhhcCCCCceEEEEECHHHHHhhhcCCCCceeecHHHHHHHHHhhhccCCCCC
Confidence 9999999 888888877889999999999 6678899999999876555433110000 0011 113
Q ss_pred CCcchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecCCcHHHHHhc--
Q psy15216 1630 GTLATHQIVGMGEAFRLARI-EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI-- 1706 (2602)
Q Consensus 1630 gt~~~~~~~al~~aL~~~~~-~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~L-- 1706 (2602)
+|+++..++++.++|++... +++++.++..++++++++.|.+ + |+.+..++....+.+..+..+..+. .+...|
T Consensus 251 ~t~~~~~~~a~~aal~~~~~~g~~~~~~~~~~l~~~l~~~l~~-~-g~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~L~~ 327 (379)
T 3ke3_A 251 ATMPTDSLRQFRDAILEAKEIGFDILRDAQWELGNRVRKVLTD-K-GIESVAAEGFEAPGVVVSYTERDDM-HKGSAFAE 327 (379)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-T-TCCBSBCTTCBCSSEEEEECSCHHH-HSSHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH-c-CCEecCCccccCceEEEEccCCcch-HHHHHHHH
Confidence 58999999999999996554 5899999999999999999988 3 7776655444445444433322111 112233
Q ss_pred CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1707 KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1707 ~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
+||.+++|.+|... .....+.+|+|++.++|.+||++++++|++.
T Consensus 328 ~Gi~v~~g~~~~~~--------------~~~~~~~lRis~~~~~t~~di~~~~~~l~~~ 372 (379)
T 3ke3_A 328 AGLQIAAGVPLKVG--------------EPDNFKTFRLGLFGLDKLTDIDGTVERFEKA 372 (379)
T ss_dssp TTCCCEECCCCSSC--------------CCTTCCEEEEECCSHHHHTCHHHHHHHHHHH
T ss_pred CCeEEeCCcccccc--------------ccCcCCEEEEeCCcCCCHHHHHHHHHHHHHH
Confidence 79999988766431 0011378999999999999999999999873
|
| >3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.7e-23 Score=274.83 Aligned_cols=336 Identities=15% Similarity=0.070 Sum_probs=250.6
Q ss_pred CCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCC--CCcE---EEeCCHHHHHHHHHHhhhhh
Q psy15216 1403 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYAD--PREI---IWTSGATESNNLAIKGAAHF 1477 (2602)
Q Consensus 1403 ~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~--~~~i---v~t~gaT~al~~al~~l~~~ 1477 (2602)
...++.+.+++.+.+...+.+++. .+...++..++++++++++|++ ++++ ++|+|+|+|+.+++.++...
T Consensus 66 ~~~~~~v~~~l~~~~~~~~~~~~~-----~p~~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~~~ 140 (502)
T 3hbx_A 66 TWMEPECDKLIMSSINKNYVDMDE-----YPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRK 140 (502)
T ss_dssp CCCCHHHHHHHHHTTTCBTTCTTT-----CHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhccCCCChhc-----ChhHHHHHHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHHHH
Confidence 466788889988887665444432 3346678889999999999997 5543 46999999999999888632
Q ss_pred hc----cCCC-----EEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCC-CCcChhHHHhhccCCceEEEEecccccccc
Q psy15216 1478 YK----KRGK-----HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN-GLITLSQLEEKICSDTILVSVMLVNNEIGV 1547 (2602)
Q Consensus 1478 ~~----~~gd-----~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~-~~id~d~l~~~i~~~t~lv~l~~~~n~tG~ 1547 (2602)
.. .+|+ +|+++.++|+++...+..+ |+.++.++++++ +.+|+++|+++|+++|++|++++++||||.
T Consensus 141 ~~~~~~~~G~~~~~~~vi~~~~~h~s~~~~~~~~---G~~~~~v~~~~~~~~~d~~~l~~~i~~~t~~v~~~~~~n~tG~ 217 (502)
T 3hbx_A 141 WQNKRKAEGKPVDKPNIVTGANVQVCWEKFARYF---EVELKEVKLSEGYYVMDPQQAVDMVDENTICVAAILGSTLNGE 217 (502)
T ss_dssp HHHHHHHTTCCCSCCEEEEETTCCHHHHHHHHHT---TCEEEEECCBTTBCSCCHHHHHHHCCTTEEEEEEEBSCTTTCC
T ss_pred HhHHHHhcCCCCCCcEEEEcCCchHHHHHHHHHc---CceeEEEecCCCcCcCCHHHHHHHHhhCCEEEEEecCCCCCCc
Confidence 11 1266 9999999999988776665 999999998875 889999999999999999999999999999
Q ss_pred ccChHHHHHHhhhc------CCEEEEecccccCc-------ccccCCCCCccEEEEccccc-cCCCceEEEEEecC-CCC
Q psy15216 1548 IQPILEIGELCRSK------GVIFHCDAAQAVGK-------IDINIQNYKVDLMSFSAHKI-YGPKGIGALYIRRN-PRT 1612 (2602)
Q Consensus 1548 ~~~l~~I~~ia~~~------gi~vivD~a~~~g~-------~~~~l~~~~~D~~v~S~~K~-~gp~G~G~l~~~~~-~~~ 1612 (2602)
+.|+++|.++|++| |+++++|+||+.+. .+.++...++|++++|+||+ ++|.|+|+++++++ .+.
T Consensus 218 ~~~l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~~~~~~~~D~v~~s~hK~l~~p~g~G~~~~~~~~~l~ 297 (502)
T 3hbx_A 218 FEDVKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLP 297 (502)
T ss_dssp BCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSSCEEEEESSGGGSC
T ss_pred ccCHHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCcccccccCCCCceEEEECcccccCCCCCeEEEEEeCHHHhh
Confidence 99999999999999 99999999998443 23344445799999999995 58999999999753 332
Q ss_pred cc---ccccccCCccccCCCCCcchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCc
Q psy15216 1613 RI---EAQIHGGGHEYGLRSGTLATHQIVGMGEAFRL-ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPH 1688 (2602)
Q Consensus 1613 ~l---~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~-~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~ 1688 (2602)
.. .+.+.++........++.+...+.++..++.. ...++.++.++..++++++.+.|.+ .+++.+..+.. ..+
T Consensus 298 ~~~~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~-~~~~~~~~~~~--~~~ 374 (502)
T 3hbx_A 298 EELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEK-TERFNIVSKDE--GVP 374 (502)
T ss_dssp GGGCEEECSSSSCEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TTCEEECSCSS--SSS
T ss_pred HHhccCcccccCCCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCEEEEeCCC--Cce
Confidence 21 22333332222222355665567777777774 4567889999999999999999988 67898875411 124
Q ss_pred eEEEEEec---CCcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHH
Q psy15216 1689 NLNISFNF---IEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK 1763 (2602)
Q Consensus 1689 ~~~~~~~~---~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~ 1763 (2602)
+..|.++. .+..++...| +||.++....... .....++|++++..+|.+|++++++.|+
T Consensus 375 ~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~p~~----------------~~~~~~lRisv~~~~t~edid~li~~L~ 438 (502)
T 3hbx_A 375 LVAFSLKDSSCHTEFEISDMLRRYGWIVPAYTMPPN----------------AQHITVLRVVIREDFSRTLAERLVIDIE 438 (502)
T ss_dssp EEEEEESSCSSCCHHHHHHHHHTTTCBCCEEECCTT----------------CTTCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred EEEEEecCCCcCCHHHHHHHHHhCCcEEeeccCCcc----------------cCCceEEEEEeCCCCCHHHHHHHHHHHH
Confidence 55566653 2334677766 7887753221111 0112689999999999999999999999
Q ss_pred Hh
Q psy15216 1764 MK 1765 (2602)
Q Consensus 1764 ~~ 1765 (2602)
+.
T Consensus 439 ~~ 440 (502)
T 3hbx_A 439 KV 440 (502)
T ss_dssp HH
T ss_pred HH
Confidence 73
|
| >1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-24 Score=289.50 Aligned_cols=334 Identities=17% Similarity=0.185 Sum_probs=249.2
Q ss_pred CCCCCCCHHHHHHHHHHHhhhc--CCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCc----EEEeCCHHHHHHHHHHh
Q psy15216 4 SATTPIDPRVVDKMIPYLRVQF--GNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE----IIWTSGATESNNLAIKG 77 (2602)
Q Consensus 4 a~~~~~p~~v~~a~~~~l~~~~--~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~----Iv~t~g~T~al~~~~~~ 77 (2602)
++.+++|+.+++++.+.+.+.+ ++|+...|..+.......+.+++++++++|+++++ |++++|+ +++.+++.+
T Consensus 51 a~e~~~~~~V~eA~~~~l~~~~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~~g~~~~~~~~~V~~~sGs-~an~~~~~a 129 (483)
T 1rv3_A 51 ASENFASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGS-PANFAVYTA 129 (483)
T ss_dssp TTCCCCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHH-HHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHhccCcccCCCccccCcchhHHHHHHHHHHHHHHHhCCCcccCceEEEECCcH-HHHHHHHHH
Confidence 4556899999999999887755 56665444444455667788999999999998654 7777777 888888888
Q ss_pred cccccccCCCEEEEcCCCCcccHHHHHHH-----HhCC--cEEEEeccC-CCCccChHHHHhhcc-CCceEEEEecccCc
Q psy15216 78 AAHFYKKRGKHIITVQTEHKSVLDSIRKL-----ENDG--FRVTYLKPK-NNGLITLSQLEEKIC-SDTILVSVMLVNNE 148 (2602)
Q Consensus 78 l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~-----~~~G--~~v~~v~~~-~~~~ld~e~l~~~i~-~~tklv~i~~~~np 148 (2602)
+. +|||+|++++++|+++...+... ...| .+++.++++ +++.+|+++|+++++ ++||+|++ +++|+
T Consensus 130 ll----~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~v~~~~~~~~~~iD~d~le~~i~~~~tklIi~-~~sn~ 204 (483)
T 1rv3_A 130 LV----EPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIA-GTSCY 204 (483)
T ss_dssp HT----CTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEEE-CCSSC
T ss_pred hc----CCCCEEEEecCccCcCcchhhhhcccCcccccceEEEEECccccCCCcCCHHHHHHHHhhcCCcEEEE-eCCcC
Confidence 87 89999999999999986533111 0013 556666556 568899999999998 89999999 99999
Q ss_pred ccccccHHHHHHHHHhcCCEEEEecccccccccccCCCC---CccEEEecccc-ccCCCCcEEEEEecCCCCcccceecC
Q psy15216 149 IGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNY---KVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHG 224 (2602)
Q Consensus 149 TG~~~~l~~I~~la~~~g~~livD~a~a~g~~~~dl~~~---~~D~~~~S~~K-~~Gp~G~G~l~~~~~~~~~l~~~~~g 224 (2602)
+ .++|+++|.++|+++|+++++|++|+.|..+.+.... ++|++++|+|| +.||+| |+++++++... +. ...|
T Consensus 205 ~-~~~dl~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p~~~~div~~s~~K~l~Gprg-G~i~~~~~~~~-~~-~~~g 280 (483)
T 1rv3_A 205 S-RNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTLRGCRA-GMIFYRRGVRS-VD-PKTG 280 (483)
T ss_dssp C-SCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGGTCSEEEEESSGGGCCCSC-EEEEEECSBCC--------
T ss_pred C-CcCCHHHHHHHHHHcCCEEEEEccchhcccccCCCCCCCCCCcEEEecCcccCCCCCc-eEEEEcchhhh-hc-cccC
Confidence 9 9999999999999999999999999887665554444 68999999999 568998 99999987542 21 0000
Q ss_pred CC----c-------cccccccCcchhHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCc
Q psy15216 225 GG----H-------EYGLRSGTLATHQIVGMGEAFRLAR-IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPH 292 (2602)
Q Consensus 225 ~~----~-------~~~~~~gt~~~~~~~al~~al~~~~-~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~ 292 (2602)
+. . ......|+++.+.++++.+|++... .++++..+++.++++++.+.|.+ . |+++..+.. ..+
T Consensus 281 ~~~~y~~~~~~~~~~~~~~~g~~~~~~iaal~~Al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~--~~~ 356 (483)
T 1rv3_A 281 KEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVE-L-GYKIVTGGS--DNH 356 (483)
T ss_dssp -CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH-T-TCEEGGGSC--SSS
T ss_pred cchhhHHHHHhhhhcCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHh-c-CCEeccCCC--CCc
Confidence 00 0 0011257888888999888998553 46788999999999999999988 3 888876532 123
Q ss_pred eEEEEEcc--cChhHHHHHh--CCeEEc----ccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCC----HHHHH
Q psy15216 293 NLNISFNF--IEGESLLMAI--KDIAVS----SGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTT----EKEID 360 (2602)
Q Consensus 293 ~~~~~~~~--~~~~~~~~~L--~gI~v~----~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t----~edid 360 (2602)
...+.+.. .+..++...| .||.++ +|..|.. ..+++||+++.++| ++|++
T Consensus 357 ~~~v~~~~~g~~~~~~~~~L~~~gI~v~~~~~pg~~~~~------------------~~~~iRis~~~~~t~g~~~edi~ 418 (483)
T 1rv3_A 357 LILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSAL------------------RPSGLRLGTPALTSRGLLEKDFQ 418 (483)
T ss_dssp EEEEEGGGGTCCHHHHHHHHHHTTEECEEECCSSCSCTT------------------SCCEEEEECHHHHHTTCCHHHHH
T ss_pred eEEEeccCCCCCHHHHHHHHHhCCcEEecCCCCCCCcCC------------------CCceEEeecCCcccCCCCHHHHH
Confidence 44555542 3556666656 799988 6653321 13789999998777 99999
Q ss_pred HHHHHHHhh
Q psy15216 361 FTIKLLKMK 369 (2602)
Q Consensus 361 ~li~~L~~~ 369 (2602)
+++++|++.
T Consensus 419 ~~~~~l~~~ 427 (483)
T 1rv3_A 419 KVAHFIHRG 427 (483)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999864
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-23 Score=274.94 Aligned_cols=320 Identities=12% Similarity=0.157 Sum_probs=244.3
Q ss_pred CCCCCHHHHHHHHHHHhhc-cCCCCCccchhHHHHHHHHHHHHHHHHHHhC--CCCCcEEEeCCHHHHHHHHHHhhhhhh
Q psy15216 1402 TTPIDPRVVDKMIPYLRVQ-FGNPASRNHIYGWTAEKAIEKARNEVAQLIY--ADPREIIWTSGATESNNLAIKGAAHFY 1478 (2602)
Q Consensus 1402 ~~~~~~~v~eal~~~l~~~-~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g--~~~~~iv~t~gaT~al~~al~~l~~~~ 1478 (2602)
..+.++.+.+++.+.+... ..++. ...+..+++++.+++++| +++++|++|+|+|+|++.++.++.
T Consensus 43 ~~~~~~~v~~a~~~~~~~~~~~y~~--------~~~~~~~~l~~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~--- 111 (391)
T 4dq6_A 43 DFKAAPCIIDSLKNRLEQEIYGYTT--------RPDSYNESIVNWLYRRHNWKIKSEWLIYSPGVIPAISLLINELT--- 111 (391)
T ss_dssp SSCCCHHHHHHHHHHHTTCCCCCBC--------CCHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHS---
T ss_pred CCCCCHHHHHHHHHHHhCCCCCCCC--------CCHHHHHHHHHHHHHHhCCCCcHHHeEEcCChHHHHHHHHHHhC---
Confidence 3467889999999988652 11111 124577888999999999 678899999999999999999986
Q ss_pred ccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccC--C--CCCcChhHHHhhccCCceEEEEeccccccccccC---h
Q psy15216 1479 KKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK--N--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---I 1551 (2602)
Q Consensus 1479 ~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~--~--~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~---l 1551 (2602)
++||+|+++.++|+++...+... |++++.++.+ . ++.+|+++|++++++ +++|++++|+||||.++| +
T Consensus 112 -~~gd~vl~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~v~i~~p~nptG~~~~~~~l 186 (391)
T 4dq6_A 112 -KANDKIMIQEPVYSPFNSVVKNN---NRELIISPLQKLENGNYIMDYEDIENKIKD-VKLFILCNPHNPVGRVWTKDEL 186 (391)
T ss_dssp -CTTCEEEECSSCCTHHHHHHHHT---TCEEEECCCEECTTSCEECCHHHHHHHCTT-EEEEEEESSBTTTTBCCCHHHH
T ss_pred -CCCCEEEEcCCCCHHHHHHHHHc---CCeEEeeeeeecCCCceEeeHHHHHHHhhc-CCEEEEECCCCCCCcCcCHHHH
Confidence 89999999999999987766654 9999999987 2 235899999999999 999999999999999965 7
Q ss_pred HHHHHHhhhcCCEEEEecccccCc----ccccCCCCCc-----cEEEEccccccCCCc--eEEEEEec-CCCCccccccc
Q psy15216 1552 LEIGELCRSKGVIFHCDAAQAVGK----IDINIQNYKV-----DLMSFSAHKIYGPKG--IGALYIRR-NPRTRIEAQIH 1619 (2602)
Q Consensus 1552 ~~I~~ia~~~gi~vivD~a~~~g~----~~~~l~~~~~-----D~~v~S~~K~~gp~G--~G~l~~~~-~~~~~l~~~~~ 1619 (2602)
++|.++|++||+++|+|++|+... .+.++..+.. .+++.|+||.+|++| +|++++++ ++.+.+.....
T Consensus 187 ~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~ 266 (391)
T 4dq6_A 187 KKLGDICLKHNVKIISDEIHSDIILKKHKHIPMASISKEFEKNTITCMAPTKTFNIAGLQSSYVVLPDEKDYKLLDDAFT 266 (391)
T ss_dssp HHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCEEEeeccccccccCCCCccCHHHcCccccCcEEEEEechhhccCcccceEEEEeCCHHHHHHHHHHHH
Confidence 888999999999999999997632 2223333333 388899999777666 79999876 55555543321
Q ss_pred cCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEec--C
Q psy15216 1620 GGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF--I 1697 (2602)
Q Consensus 1620 g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~--~ 1697 (2602)
....++++...+.++.+++......+++..+++.++++++.+.|.+.++++.+..+... ....+.++. .
T Consensus 267 ------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 337 (391)
T 4dq6_A 267 ------RIDIKRNNCFSLVATEASYNNGESWLESFLEYLESNIDFAIKYINENMPKLKVRKPEGT---YLLWVDFSALGL 337 (391)
T ss_dssp ------HTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECCCSBS---SEEEEECGGGCC
T ss_pred ------hhcCCCCCHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEecCCCcc---EEEEEEhhhcCC
Confidence 12234677777777777777544557888899999999999999875678887654322 222344542 3
Q ss_pred CcHHHHHhc--C-CEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1698 EGESLLMAI--K-DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1698 ~~~~~~~~L--~-gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
+..++...| + ||.+++|..|... ..+++|++++ ++.+++++++++|++.
T Consensus 338 ~~~~~~~~l~~~~gi~v~~g~~~~~~-----------------~~~~iRis~~--~~~~~i~~~l~~l~~~ 389 (391)
T 4dq6_A 338 SDEELESILVQKGKVALNQGNSFGIG-----------------GSGYQRINLA--CPRSMLEEALIRIKNA 389 (391)
T ss_dssp CHHHHHHHHHHTTCEECEEGGGGCTT-----------------CTTEEEEECC--SCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCEEeeCchhhCCC-----------------CCCeEEEEEc--CCHHHHHHHHHHHHHH
Confidence 566777666 5 9999999887642 1389999998 6899999999999863
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.91 E-value=2.3e-23 Score=268.68 Aligned_cols=304 Identities=18% Similarity=0.143 Sum_probs=240.0
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCC
Q psy15216 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK 87 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd 87 (2602)
++|+.+.+++.+.+...+.+|.. ...++|+++++++++++++|++|+|+|+|+++++.++ |
T Consensus 39 ~~~~~v~~a~~~~~~~~~~y~~~-----------~~~~l~~~la~~~~~~~~~i~~~~g~t~al~~~~~~~--------d 99 (361)
T 3ftb_A 39 GIPKSFLNNIDEGIKNLGVYPDV-----------NYRRLNKSIENYLKLKDIGIVLGNGASEIIELSISLF--------E 99 (361)
T ss_dssp CSCHHHHTTHHHHHHGGGSCCCT-----------TCHHHHHHHHHHHTCCSCEEEEESSHHHHHHHHHTTC--------S
T ss_pred CCCHHHHHHHHHHHHHhcCCCCc-----------cHHHHHHHHHHHhCCCcceEEEcCCHHHHHHHHHHHc--------C
Confidence 57899999999988876555543 2467899999999998899999999999999998876 8
Q ss_pred EEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccCCceEEEEecccCccccccc---HHHHHHHHHh
Q psy15216 88 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIGELCRS 164 (2602)
Q Consensus 88 ~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~---l~~I~~la~~ 164 (2602)
+|+++.+.|+++...+... |++++.++.++++.++++++++++++ ++++++++|+||||.++| +++|+++|++
T Consensus 100 ~vi~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~l~~~l~~-~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~ 175 (361)
T 3ftb_A 100 KILIIVPSYAEYEINAKKH---GVSVVFSYLDENMCIDYEDIISKIDD-VDSVIIGNPNNPNGGLINKEKFIHVLKLAEE 175 (361)
T ss_dssp EEEEEESCCTHHHHHHHHT---TCEEEEEECCTTSCCCHHHHHHHTTT-CSEEEEETTBTTTTBCCCHHHHHHHHHHHHH
T ss_pred cEEEecCChHHHHHHHHHc---CCeEEEeecCcccCCCHHHHHHhccC-CCEEEEeCCCCCCCCCCCHHHHHHHHHHhhh
Confidence 9999999999987776655 99999999988878899999999988 999999999999999998 5567777889
Q ss_pred cCCEEEEeccccccccc-----ccC-CCCCccEEEeccccccCCCC--cEEEE-EecCCCCcccceecCCCccccccccC
Q psy15216 165 KGVIFHCDAAQAVGKID-----INI-QNYKVDLMSFSAHKIYGPKG--IGALY-IRRNPRTRIEAQIHGGGHEYGLRSGT 235 (2602)
Q Consensus 165 ~g~~livD~a~a~g~~~-----~dl-~~~~~D~~~~S~~K~~Gp~G--~G~l~-~~~~~~~~l~~~~~g~~~~~~~~~gt 235 (2602)
||+++|+|++|+..... ... ...+..+++.|+||.+|++| +||++ .++++.+.+.+.. ..++
T Consensus 176 ~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~g~~~~~~~~~~~~~~~~~---------~~~~ 246 (361)
T 3ftb_A 176 KKKTIIIDEAFIEFTGDPSSSFVGEIKNYSCLFIIRAMTKFFAMPGIRFGYGITNNKEIAAKIKAKQ---------NPWN 246 (361)
T ss_dssp HTCEEEEECSSGGGTCCTTSSSGGGTTTCSSEEEEEESSSTTSCGGGCCEEEEESCHHHHHHHHTTS---------CTTC
T ss_pred cCCEEEEECcchhhcCCcccchhHhcccCCCEEEEeeChhhcCCCCcceeEEEeCCHHHHHHHHhhC---------CCCC
Confidence 99999999998744321 111 12234577889999888776 68888 6666655554322 2346
Q ss_pred cchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceE-EeCCCCCCCCceEEEEEcccChhHHHHHh--CC
Q psy15216 236 LATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIY-INGDMNNRIPHNLNISFNFIEGESLLMAI--KD 312 (2602)
Q Consensus 236 ~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~g 312 (2602)
++.....++.++++. ..++++..++..++++++.+.|.+ ++++. +..+.. ....+.++..+..++...| +|
T Consensus 247 ~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~l~~~g 320 (361)
T 3ftb_A 247 INCFAEMAAINCLKD-TNYIEESLLWIKKERKRFIEELNK-IGFIKRVFSPHA----NFVLCRLENISGEKLYDSLLKED 320 (361)
T ss_dssp SCHHHHHHHHHTSSC-HHHHHHHHHHHHHHHHHHHHHHHH-SSSEEEEECCSS----SEEEEEESSSCHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHh-CCCCceecCCCC----eEEEEEcCCCCHHHHHHHHHHCC
Confidence 777888877777773 456788899999999999999987 78888 664432 3445566655677777777 79
Q ss_pred eEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 313 IAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 313 I~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
|.+++|..|.+. ..+++|++++ +.+++++++++|++.
T Consensus 321 i~v~~g~~~~~~-----------------~~~~iRis~~---~~~~~~~l~~~l~~~ 357 (361)
T 3ftb_A 321 IVIRRCCNFIGL-----------------DDSFVRFAIK---DEKKNTKFLRALKGV 357 (361)
T ss_dssp EECEECTTSTTC-----------------CTTEEEEECC---CHHHHHHHHHHHHHH
T ss_pred eEEeeCccCCCC-----------------CCCEEEEEcC---CHHHHHHHHHHHHHH
Confidence 999999877531 2389999998 889999999999863
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.7e-24 Score=275.35 Aligned_cols=312 Identities=16% Similarity=0.146 Sum_probs=235.1
Q ss_pred CCCCCC-CCCHHHHHHHHHHHhhh-cCCCCCCCcchhhhHHHHHHHHHHHHHHHhC------CCCCcEEEeCCHHHHHHH
Q psy15216 2 DYSATT-PIDPRVVDKMIPYLRVQ-FGNPASRNHIYGWTAEKAIEKARNEVAQLIY------ADPREIIWTSGATESNNL 73 (2602)
Q Consensus 2 d~a~~~-~~p~~v~~a~~~~l~~~-~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g------~~~~~Iv~t~g~T~al~~ 73 (2602)
+.+... ++|+.+.+++.+.+... ..++.. ....++|+.++++++ +++++|++|+|+++|+++
T Consensus 35 ~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~----------~~~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~ 104 (370)
T 2z61_A 35 EIGEPDFNTPKPIVDEGIKSLKEGKTHYTDS----------RGILELREKISELYKDKYKADIIPDNIIITGGSSLGLFF 104 (370)
T ss_dssp CCCSCSSCCCHHHHHHHHHHHHTTCCSCCCT----------TCCHHHHHHHHHHHHHHSSCCCCGGGEEEESSHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHcCccCCCCC----------CCCHHHHHHHHHHHHHHhCCCCChhhEEECCChHHHHHH
Confidence 333333 35788999999888642 112211 123456666766664 567899999999999999
Q ss_pred HHHhcccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccc
Q psy15216 74 AIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQ 153 (2602)
Q Consensus 74 ~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~ 153 (2602)
++.++. ++||+|++++++|+++...+... |++++.++ +|+++|++++++++++|++++|+||||.++
T Consensus 105 ~~~~~~----~~gd~vl~~~p~~~~~~~~~~~~---g~~~~~v~------~d~~~l~~~l~~~~~~v~~~~p~nptG~~~ 171 (370)
T 2z61_A 105 ALSSII----DDGDEVLIQNPCYPCYKNFIRFL---GAKPVFCD------FTVESLEEALSDKTKAIIINSPSNPLGEVI 171 (370)
T ss_dssp HHHHHC----CTTCEEEEESSCCTHHHHHHHHT---TCEEEEEC------SSHHHHHHHCCSSEEEEEEESSCTTTCCCC
T ss_pred HHHHhc----CCCCEEEEeCCCchhHHHHHHHc---CCEEEEeC------CCHHHHHHhcccCceEEEEcCCCCCcCccc
Confidence 999987 79999999999999987766544 99999987 689999999998999999999999999999
Q ss_pred cHHHHHHHHHhcCCEEEEecccccccc---cccCC----CCCccEEEeccccccCCCC--cEEEEEecCCCCcccceecC
Q psy15216 154 PILEIGELCRSKGVIFHCDAAQAVGKI---DINIQ----NYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHG 224 (2602)
Q Consensus 154 ~l~~I~~la~~~g~~livD~a~a~g~~---~~dl~----~~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g 224 (2602)
|.+ |.++|++||+++|+|++|+.+.. +.++. ..+.|+++.|+||.+|++| +||+++++++++.+.+...+
T Consensus 172 ~~~-l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~ 250 (370)
T 2z61_A 172 DRE-IYEFAYENIPYIISDEIYNGLVYEGKCYSAIEFDENLEKTILINGFSKLYAMTGWRIGYVISNDEIIEAILKLQQN 250 (370)
T ss_dssp CHH-HHHHHHHHCSEEEEECTTTTCBSSSCCCCGGGTCTTCSSEEEEEESTTTTTCGGGCCEEEECCHHHHHHHHHHHHH
T ss_pred CHH-HHHHHHHcCCEEEEEcchhhcccCCCCcCHHHccCCCCcEEEEecChhccCCccceEEEEEECHHHHHHHHHHHhh
Confidence 999 99999999999999999986543 22222 2357899999999999888 89999998777666543311
Q ss_pred CCccccccccCcchhHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcccCh
Q psy15216 225 GGHEYGLRSGTLATHQIVGMGEAFRL-ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEG 303 (2602)
Q Consensus 225 ~~~~~~~~~gt~~~~~~~al~~al~~-~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~ 303 (2602)
..++++.....++.++|+. ...++++..+++.++++++.+.|.+ . ++.+..+.. +....+.++. +.
T Consensus 251 -------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~---~~~~~~~~~~-~~ 317 (370)
T 2z61_A 251 -------LFISAPTISQYAALKAFEKETEREINSMIKEFDRRRRLVLKYVKD-F-GWEVNNPIG---AYYVFPNIGE-DG 317 (370)
T ss_dssp -------HTSSSCHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHH-T-TCBCCCCCB---TTEECCBCSS-CH
T ss_pred -------cccCCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHH-c-CCeecCCCc---ceEEEEecCC-CH
Confidence 1246677777777677764 4566788889999999999999987 4 666554322 2222233333 55
Q ss_pred hHHHHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 304 ESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 304 ~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
.++...| +||.+++|..|... ..+++||+++ ++++++++++++|++.
T Consensus 318 ~~~~~~l~~~~gi~v~~g~~f~~~-----------------~~~~~Ri~~~--~~~~~i~~~~~~l~~~ 367 (370)
T 2z61_A 318 REFAYKLLKEKFVALTPGIGFGSK-----------------GKNYIRISYA--NSYENIKEGLERIKEF 367 (370)
T ss_dssp HHHHHHHHHHHCEECEEGGGGCGG-----------------GSSBEEEECC--SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCEEEeCchhhCCC-----------------CCCEEEEEEe--CCHHHHHHHHHHHHHH
Confidence 6666665 59999998776420 1378999998 6999999999999863
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-23 Score=276.93 Aligned_cols=313 Identities=16% Similarity=0.110 Sum_probs=240.6
Q ss_pred CCCCHHHHHHHHHHHhhhc--CCCCCCCcchhhhHHHHHHHHHHHHHHHhC-----CCCCcEEEeCCHHHHHHHHHHhcc
Q psy15216 7 TPIDPRVVDKMIPYLRVQF--GNPASRNHIYGWTAEKAIEKARNEVAQLIY-----ADPREIIWTSGATESNNLAIKGAA 79 (2602)
Q Consensus 7 ~~~p~~v~~a~~~~l~~~~--~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g-----~~~~~Iv~t~g~T~al~~~~~~l~ 79 (2602)
.++++.+.+++.+.+.... .++. .....++|++++++++ +++++|++|+|+|+|+++++.++.
T Consensus 70 ~~~~~~v~~a~~~~~~~~~~~~y~~----------~~g~~~lr~~la~~~~~~~~~~~~~~v~~t~g~t~al~~~~~~l~ 139 (427)
T 3dyd_A 70 LPTDPEVTQAMKDALDSGKYNGYAP----------SIGFLSSREEIASYYHCPEAPLEAKDVILTSGCSQAIDLCLAVLA 139 (427)
T ss_dssp SCCCHHHHHHHHHHHHHCCSSSCCC----------TTCCHHHHHHHHHHHCBTTBCCCGGGEEEESSHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHhcCcCCCCCC----------CCCcHHHHHHHHHHHhhcCCCCChHHEEEecCcHHHHHHHHHHhc
Confidence 4789999999999887521 1211 1235678999999998 678899999999999999999987
Q ss_pred cccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCC--CCccChHHHHhhccCCceEEEEecccCccccccc---
Q psy15216 80 HFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP--- 154 (2602)
Q Consensus 80 ~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~--- 154 (2602)
++||+|+++.|.|+++...+... |++++.++.++ ++.+|+++++++++++++++++++|+||||.++|
T Consensus 140 ----~~gd~vl~~~p~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~ 212 (427)
T 3dyd_A 140 ----NPGQNILVPRPGFSLYKTLAESM---GIEVKLYNLLPEKSWEIDLKQLEYLIDEKTACLIVNNPSNPCGSVFSKRH 212 (427)
T ss_dssp ----CTTCEEEEEESCCTHHHHHHHHT---TCEEEEEEEEGGGTTEECHHHHHSSCCTTEEEEEEESSCTTTCCCCCHHH
T ss_pred ----CCCCEEEEcCCCchhHHHHHHHc---CCEEEEEecccccCCCCCHHHHHHHhccCCCEEEEECCCCCCCCCCCHHH
Confidence 79999999999999877666554 99999998754 5678999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCEEEEecccccc----cccccCCCCCcc---EEEeccccccCCCC--cEEEEEecCC-------CCcc
Q psy15216 155 ILEIGELCRSKGVIFHCDAAQAVG----KIDINIQNYKVD---LMSFSAHKIYGPKG--IGALYIRRNP-------RTRI 218 (2602)
Q Consensus 155 l~~I~~la~~~g~~livD~a~a~g----~~~~dl~~~~~D---~~~~S~~K~~Gp~G--~G~l~~~~~~-------~~~l 218 (2602)
+++|+++|++||+++|+|++|+.. .....+..++.+ +++.|+||.||++| +||+++++.. .+.+
T Consensus 213 l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~~~~~~vi~~~S~sK~~~~~G~riG~~~~~~~~~~~~~~i~~~l 292 (427)
T 3dyd_A 213 LQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLSTDVPILSCGGLAKRWLVPGWRLGWILIHDRRDIFGNEIRDGL 292 (427)
T ss_dssp HHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGGCSSCCEEEEEESTTTSSCGGGCCEEEEEECSTTSSHHHHHHHH
T ss_pred HHHHHHHHHHCCCEEEEEcCchhhccCCCcCccHHHhCCCCcEEEEeeccccCCCcCcceEEEEecCcchhhHHHHHHHH
Confidence 999999999999999999998752 222233223322 66789999988888 8999998631 1122
Q ss_pred cceecCCCccccccccCcchhHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEE
Q psy15216 219 EAQIHGGGHEYGLRSGTLATHQIVGMGEAFRL-ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNIS 297 (2602)
Q Consensus 219 ~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~-~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~ 297 (2602)
.... ...++++.+...++.++|+. ...++++..+++.++++++.+.|.+ +|++.+..+.. ..+..+.
T Consensus 293 ~~~~--------~~~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~p~~---g~~~~~~ 360 (427)
T 3dyd_A 293 VKLS--------QRILGPCTIVQGALKSILCRTPGEFYHNTLSFLKSNADLCYGALAA-IPGLRPVRPSG---AMYLMVG 360 (427)
T ss_dssp HHHH--------HHHCCSCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH-STTEEEECCSB---TTEEEEE
T ss_pred HHHH--------hccCCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhc-CCCceecCCCe---eEEEEEe
Confidence 1111 11356777788878788873 3456788889999999999999987 68988765533 2334445
Q ss_pred Ecc------cChhHHHHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 298 FNF------IEGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 298 ~~~------~~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
++. .+..++...| +||.+.+|..|..+ +++||+++ ++++++++++++|++
T Consensus 361 l~~~~~~~~~~~~~~~~~l~~~~gV~v~~g~~~~~~-------------------~~iRis~~--~~~e~i~~~l~~l~~ 419 (427)
T 3dyd_A 361 IEMEHFPEFENDVEFTERLVAEQSVHCLPATCFEYP-------------------NFIRVVIT--VPEVMMLEACSRIQE 419 (427)
T ss_dssp ECGGGCTTCSSHHHHHHHHHHHHCEECEEGGGGTCT-------------------TEEEEESC--SCHHHHHHHHHHHHH
T ss_pred cCHhhcCCCCCHHHHHHHHHHHCCEEEECCcccCCC-------------------CeEEEEEC--CCHHHHHHHHHHHHH
Confidence 541 3445666555 69999999877542 89999987 689999999999986
Q ss_pred h
Q psy15216 369 K 369 (2602)
Q Consensus 369 ~ 369 (2602)
.
T Consensus 420 ~ 420 (427)
T 3dyd_A 420 F 420 (427)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-23 Score=275.27 Aligned_cols=316 Identities=14% Similarity=0.091 Sum_probs=239.4
Q ss_pred CCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCE
Q psy15216 9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKH 88 (2602)
Q Consensus 9 ~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~ 88 (2602)
+++.+.+++.+.+.... +... .+.......+..+++++++++++|. +++++++|+|+|+.+++.++. ++||.
T Consensus 58 ~~~~v~~a~~~~~~~~~-~~~~-~~~~~~g~~~~~~~l~~~la~~~g~--~~v~~~~ggt~a~~~~~~~~~----~~gd~ 129 (398)
T 3a2b_A 58 TDTRIIKAAQDALEKYG-TGCA-GSRFLNGTLDIHVELEEKLSAYVGK--EAAILFSTGFQSNLGPLSCLM----GRNDY 129 (398)
T ss_dssp GCHHHHHHHHHHHHHHC-SCCC-SBTTTTCCCHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHHSS----CTTCE
T ss_pred CCHHHHHHHHHHHHHcC-CCCC-CcCcccCCcHHHHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHHHHh----CCCCE
Confidence 78899999999886532 1111 1111122235778999999999996 489999999999999999987 89999
Q ss_pred EEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccC----CceEEEEecccCcccccccHHHHHHHHHh
Q psy15216 89 IITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS----DTILVSVMLVNNEIGVIQPILEIGELCRS 164 (2602)
Q Consensus 89 Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~----~tklv~i~~~~npTG~~~~l~~I~~la~~ 164 (2602)
|+++.+.|+++...+... |++++.++. +|+++|++++++ ++++|++++++||||.+.|+++|.++|++
T Consensus 130 V~~~~p~~~~~~~~~~~~---g~~~~~v~~-----~d~~~l~~~l~~~~~~~~~~v~~~~~~nptG~~~~~~~l~~~~~~ 201 (398)
T 3a2b_A 130 ILLDERDHASIIDGSRLS---FSKVIKYGH-----NNMEDLRAKLSRLPEDSAKLICTDGIFSMEGDIVNLPELTSIANE 201 (398)
T ss_dssp EEEETTCCHHHHHHHHHS---SSEEEEECT-----TCHHHHHHHHHTSCSSSCEEEEEESBCTTTCCBCCHHHHHHHHHH
T ss_pred EEECCccCHHHHHHHHHc---CCceEEeCC-----CCHHHHHHHHHhhccCCceEEEEeCCCCCCCCccCHHHHHHHHHH
Confidence 999999999987776654 999999985 589999999976 79999999999999999999999999999
Q ss_pred cCCEEEEecccccccc---cccC-C--C--CCccEEEeccccccCCCCcEEEEEecCCCCcccceecCCCccccccccCc
Q psy15216 165 KGVIFHCDAAQAVGKI---DINI-Q--N--YKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTL 236 (2602)
Q Consensus 165 ~g~~livD~a~a~g~~---~~dl-~--~--~~~D~~~~S~~K~~Gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~ 236 (2602)
||+++|+|++|+.+.. ...+ . . .++|++++|+||++||+| ||+++++++++.+.+... .....+++
T Consensus 202 ~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~~~G-G~~~~~~~~~~~l~~~~~-----~~~~~~~~ 275 (398)
T 3a2b_A 202 FDAAVMVDDAHSLGVIGHKGAGTASHFGLNDDVDLIMGTFSKSLASLG-GFVAGDADVIDFLKHNAR-----SVMFSASM 275 (398)
T ss_dssp HTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTCSSC-EEEEECHHHHHHHHHHCH-----HHHSSBCC
T ss_pred cCcEEEEECCCcccccCCCCCchHhhcCCCcCCeEEEecccccccCCC-cEEEeCHHHHHHHHHhcc-----cceecCCC
Confidence 9999999999976532 1111 1 1 126899999999999998 999999877666654211 01123456
Q ss_pred chhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc-cChhHHHHHh--CCe
Q psy15216 237 ATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGESLLMAI--KDI 313 (2602)
Q Consensus 237 ~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~L--~gI 313 (2602)
+..+.+++.++|+.. .+.++.++++.++++++.+.|.+ + ++.+..+. ..++.+.++. .+..++...| +||
T Consensus 276 ~~~~~a~~~~~l~~~-~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~----g~~~~~~~~~~~~~~~l~~~l~~~gi 348 (398)
T 3a2b_A 276 TPASVASTLKALEII-QNEPEHIEKLWKNTDYAKAQLLD-H-GFDLGATE----SPILPIFIRSNEKTFWVTKMLQDDGV 348 (398)
T ss_dssp CHHHHHHHHHHHHHH-HHCTHHHHHHHHHHHHHHHHHHH-T-TCCBCSCC----SSEEEEECCCHHHHHHHHHHHHHTTE
T ss_pred CHHHHHHHHHHHHHH-hhCHHHHHHHHHHHHHHHHHHHh-c-CCCcCCCC----CCEEEEEcCCHHHHHHHHHHHHHCCc
Confidence 666665666777754 34568888999999999999987 3 66655332 2334444432 2355666666 799
Q ss_pred EEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 314 AVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 314 ~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
.++++..|..+ ...+++||+++.+++++++++++++|++.
T Consensus 349 ~v~~~~~~~~~----------------~~~~~iRis~~~~~~~e~i~~~~~~l~~~ 388 (398)
T 3a2b_A 349 FVNPVVSPAVP----------------AEESLIRFSLMATHTYDQIDEAIEKMVKV 388 (398)
T ss_dssp ECEEECTTTSC----------------GGGCEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred EEEeeCCCCCC----------------CCCceEEEEEeCCCCHHHHHHHHHHHHHH
Confidence 99988776432 11378999999999999999999999964
|
| >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 | Back alignment and structure |
|---|
Probab=99.91 E-value=4.2e-24 Score=283.19 Aligned_cols=329 Identities=15% Similarity=0.088 Sum_probs=235.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhhcCCCCC--C-------CcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHH-HH
Q psy15216 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPAS--R-------NHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGAT-ES 70 (2602)
Q Consensus 1 Ld~a~~~~~p~~v~~a~~~~l~~~~~~p~~--~-------~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T-~a 70 (2602)
|||++++|.|+.|++++.......+.++.. + .+..+.......+++++++++++|++++ +++|+|+| .+
T Consensus 84 ld~aa~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~-~~~t~g~te~a 162 (456)
T 2z67_A 84 PKSVRIGEREARTYSKIHEELSSGFCHGIGRSGNLVDPQPKASGASIMYALTNKILESFFKQLGLNVH-AIATPISTGMS 162 (456)
T ss_dssp TTCEECSSCCCCCSCHHHHHHTTTCTTCBSBTTBTTSCCTTBHHHHHHHHHHHHHHHHHHHHTTCCCE-EEEESSCHHHH
T ss_pred ccccccccccccccccccCccccccCCCccHHHHHHhhCcccccCcHHHHHHHHHHHHHHHHcCCCCC-EEEeCcHHHHH
Confidence 799999999999999987744222222211 0 0111123566788999999999999876 99999999 46
Q ss_pred HHHHHHhcccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEecc---CCCCccChHHHHhhc-c----CCceEEEE
Q psy15216 71 NNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP---KNNGLITLSQLEEKI-C----SDTILVSV 142 (2602)
Q Consensus 71 l~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~---~~~~~ld~e~l~~~i-~----~~tklv~i 142 (2602)
+.+++.++.. +.+|++|+++.++|+++...+.. .|++++.++. ++++.+|+++|+++| + +++.+|++
T Consensus 163 ~~~al~~~~~--~~~~~~vi~~~~~h~s~~~~~~~---~G~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~vv~ 237 (456)
T 2z67_A 163 ISLCLSAARK--KYGSNVVIYPYASHKSPIKAVSF---VGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLS 237 (456)
T ss_dssp HHHHHHHHHH--HHCCCEEEEECCCCHHHHHHHHH---TTCEEEEECCEEETTEEECCHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHH--hcCCCEEEEECCCcHHHHHHHHH---cCCCceEEEEeccCCCCCcCHHHHHHHHHHHhhCCCeEEEEE
Confidence 6556666541 12678899999999997666554 4999999886 567889999999999 5 47888999
Q ss_pred ecccCcccccccHHHHHHHHHhcCCEEEEecccc---cccccccCCCC--CccEEEecccc-ccCCCCcEEEEEe-cCCC
Q psy15216 143 MLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQA---VGKIDINIQNY--KVDLMSFSAHK-IYGPKGIGALYIR-RNPR 215 (2602)
Q Consensus 143 ~~~~npTG~~~~l~~I~~la~~~g~~livD~a~a---~g~~~~dl~~~--~~D~~~~S~~K-~~Gp~G~G~l~~~-~~~~ 215 (2602)
++++||||.+.|+++|+++|+++|+++|+|+||+ .|..+.+...+ ++|++++|+|| +++|.|+|+++++ ++++
T Consensus 238 ~~~nn~tG~i~~l~~I~~la~~~g~~v~vD~A~~~~~~g~~~~~~~~~~~~~D~~~~s~hK~~~~p~g~G~l~~~~~~~~ 317 (456)
T 2z67_A 238 TLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVVSSSDKNLLTPIGGGLVYSTDAEFI 317 (456)
T ss_dssp ESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHTSCCSEEEEEHHHHHCCCSSCEEEEESCHHHH
T ss_pred eCCCCCCCCcCCHHHHHHHHHHcCCcEEEECcchHHHHHhhHHHHHhhCCCCCEEEEcCCCCcCCCCCeEEEEEcCHHHH
Confidence 9999999999999999999999999999998875 33444443222 78999999999 4678999999995 5555
Q ss_pred CcccceecCCCccccccccCcchhHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHhhccC---ceEEeCCCCCCCC
Q psy15216 216 TRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIE---EIYINGDMNNRIP 291 (2602)
Q Consensus 216 ~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~-~~~~~~~~~~~~~~~l~~~l~~~L~~~~~---g~~l~~~~~~~~~ 291 (2602)
+.+.+.+.|+ ..++ ..+++.+++. +...+++++.++..++++++.+.|.+ ++ |+.++.++
T Consensus 318 ~~l~~~~~g~------~~~~----~~~~~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~g~~v~~~~----- 381 (456)
T 2z67_A 318 KEISLSYPGR------ASAT----PVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLND-LSKKTGGKFLDVE----- 381 (456)
T ss_dssp HHHHTTSCSC------BCSH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHSSCCBCCCC-----
T ss_pred hhcCcCCCCC------CCCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccccCCEecCCC-----
Confidence 5665544332 1112 2344445555 33467889999999999999999987 54 76665543
Q ss_pred ceEEEEEcccC-hhHHHHHh--CCe---EEc------ccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHH
Q psy15216 292 HNLNISFNFIE-GESLLMAI--KDI---AVS------SGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEI 359 (2602)
Q Consensus 292 ~~~~~~~~~~~-~~~~~~~L--~gI---~v~------~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edi 359 (2602)
+.+.+.+...+ ..++...| ++| .+. .|.+|.. ...+++|+|++.++|++|+
T Consensus 382 ~~v~~~~~~~~~~~~l~~~L~~~gi~~~rv~~~~g~f~G~~~~~-----------------~~~~~vr~s~~~~~t~eei 444 (456)
T 2z67_A 382 SPIASCISVNSDPVEIAAKLYNLRVTGPRGIKKTDHFGNCYLGT-----------------YTHDYIVMNAAIGVRTEDI 444 (456)
T ss_dssp CSSEEEEECSSCHHHHHHHHHHTTEESCEEECTTCHHHHTCSSC-----------------CSCCEEEEECCTTCCHHHH
T ss_pred CeEEEEEecccHHHHHHHHHHHcCCCcceEEeecCccccccccc-----------------cCcchhhhhhhcCCCHHHH
Confidence 22334441112 24566656 554 232 1222221 1237899999999999999
Q ss_pred HHHHHHHHh
Q psy15216 360 DFTIKLLKM 368 (2602)
Q Consensus 360 d~li~~L~~ 368 (2602)
++++++|++
T Consensus 445 d~~l~~L~~ 453 (456)
T 2z67_A 445 VNSVSKLEK 453 (456)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 999999985
|
| >2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=6.4e-25 Score=277.29 Aligned_cols=297 Identities=19% Similarity=0.159 Sum_probs=203.7
Q ss_pred ceEEEEEcCcccEEEEEEECCeeEEEeCCCCCccccEEEEEecCCcEEEcHHHHhhhcc-CCCCch-hhhhhhhCCCCCC
Q psy15216 637 CVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNI-DPKNTI-SSIKRFIARDLKN 714 (2602)
Q Consensus 637 ~~vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~v~~~~~~~~~vG~~A~~~~~~-~p~~~~-~~~K~~lg~~~~~ 714 (2602)
.+.+|||+||+|+.+++ .+|. ....||+|+...+....+|. ...... ++..+. ..-...+|....
T Consensus 21 m~~igiDlG~~~tkv~~-~~g~---------~~~~PSvva~~~~~~~~~~~--~~~v~~~~g~~~~~~~~~~~vG~~A~- 87 (346)
T 2fsj_A 21 MVVVGLDVGYGDTKVIG-VDGK---------RIIFPSRWAVTETESWGIGG--KIPVLSTDGGQTKFIYGKYASGNNIR- 87 (346)
T ss_dssp CEEEEEEECSSEEEEEC-GGGC---------EEEEESCEEEECCSCC------CCCCBBSSTTSSEEEEGGGCCSSCCB-
T ss_pred eEEEEEecCCcceeEEe-cCCC---------EEEecceeeeccccccCcCc--ceEEEEecccccccCCcEEEEcccee-
Confidence 47799999999999874 2221 12469999886543211221 000000 000000 012223342211
Q ss_pred CCCCCCCeeeecCCCceEEEEeCceeCHHHHHHHHHHHHHHHHHHhhcCccceEE--EEEcCCCCHHHHHHHHHHHHHc-
Q psy15216 715 INTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAV--ITVPAYFNDIQRQFTKNAAKLA- 791 (2602)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~V--iTVPa~f~~~qr~~~~~Aa~~A- 791 (2602)
....++.+++++..++++..|++.++...+.+ .++| ||||++|++.||+++++|+..+
T Consensus 88 ------------------~~l~~~~~~~~~~~~ll~~~l~~~~~~~~~~~-~~vvL~i~vP~~~~~~er~a~~~~~~~~~ 148 (346)
T 2fsj_A 88 ------------------VPQGDGRLASKEAFPLIAAALWESGIHNDGSP-VDLVIGSGTPLGTFDLEVKAAKEALENKV 148 (346)
T ss_dssp ------------------CCSSTTCTTSTTTHHHHHHHHHHHCCCC---C-EEEEEEEEECGGGHHHHHHHHHHHHTTEE
T ss_pred ------------------cccCCCcccChhHHHHHHHHHHHhhhccCCCc-eEEEEcccCCHHHHHHHHHHHHHHHcCCC
Confidence 11123445667778888888887653333333 5799 9999999999999999998765
Q ss_pred -------C------CceEEEechhHHHHHHhhhcc---CcccceEEEEEeCCceEEEEEEEEECCEEEEEEEecCCCCcc
Q psy15216 792 -------G------LNVLRLLNEPTSAAIAYKLDK---NIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGG 855 (2602)
Q Consensus 792 -------G------l~~~~li~EPtAAAl~y~~~~---~~~~~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG 855 (2602)
| ++.+++++||+|||++| ++. ...+++++|||+||||||++++++.++. .+.++.++.++||
T Consensus 149 ~~v~~~~G~~~~i~v~~v~li~Ep~AAa~~~-l~~~~~~~~~~~vlVvDIGgGTtDv~vi~~~~g~-~v~~~s~~~~lGg 226 (346)
T 2fsj_A 149 LTVTGPEGEVRQFNITRLIMRPQGVGAALYL-LNQGIIEQQPGYGVVIDVGSRTTDVLTINLMDME-PVVELSFSLQIGV 226 (346)
T ss_dssp EEEECGGGCEEEEEEEEEEEEETTHHHHHHH-HHHTSSCCCSSEEEEEEECSSCEEEEEEETTTTE-ECGGGCEEESCCH
T ss_pred cEEEeCCCceEEEEEEEEEEEccHHHHHHHh-hccccccccCCcEEEEECCCCcEEEEEEEecCCE-EEeecCCCcchhH
Confidence 4 35689999999999988 322 1234789999999999999999987777 6666667789999
Q ss_pred hHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHcccccceEEEEEecCCceEEEEeCHHHH-HHHHHHHHHHHHH
Q psy15216 856 DDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITIDMKQF-FTITQHLVNRTIL 934 (2602)
Q Consensus 856 ~~~D~~l~~~l~~~~~~~~~~~~~~~~l~~~~e~~K~~LS~~~~~~~~i~~~~~~~~~~~itr~~f-e~l~~~~~~~~~~ 934 (2602)
.+|++.|.+++.+++.... ... . ..+| . +..+. + .|. .++++++ +++++++++++.+
T Consensus 227 ~~i~~~I~~~i~~~~g~~~-~i~-~----~~~e-------~--~~~~~--~-~g~----~~~~~~i~~~~i~~~~~~i~~ 284 (346)
T 2fsj_A 227 GDAISALSRKIAKETGFVV-PFD-L----AQEA-------L--SHPVM--F-RQK----QVGGPEVSGPILEDLANRIIE 284 (346)
T ss_dssp HHHHHHHHHHHHHHHCCCC-CHH-H----HHHH-------T--TSCEE--E-TTE----EECSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCc-CCC-H----HHHh-------c--CCeEe--E-CCc----cCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999988775410 111 1 1122 1 11122 2 233 3569999 9999999999999
Q ss_pred HHHHHHHHcCCCccccceEEEecCccchHHHHHHHHhhccCcccC---cCCcchHhHHHHHHHh
Q psy15216 935 LSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLT---SIDPDKAVVFGAAIQA 995 (2602)
Q Consensus 935 ~i~~~l~~a~~~~~~i~~V~LvGG~sr~P~v~~~l~~~f~~~~~~---~~~p~~aVa~GAa~~a 995 (2602)
.+++.|+++ .++++.|+|+||++++ +++.|++.|+. +.. ..||++|+|+|+..++
T Consensus 285 ~i~~~l~~~---~~~i~~IvL~GGga~l--l~~~l~~~~~~-~~i~~~~~~P~~ava~G~~~~~ 342 (346)
T 2fsj_A 285 NIRLNLRGE---VDRVTSLIPVGGGSNL--IGDRFEEIAPG-TLVKIKPEDLQFANALGYRDAA 342 (346)
T ss_dssp HHHHHHGGG---GGGEEEEEEESTTHHH--HGGGGGGGSTT-CBCCCCTTTTTTHHHHHHHHHH
T ss_pred HHHHHHHhh---hhcccEEEEECCcHHH--HHHHHHHHCcC-cEEeccCCCcHHHHHHHHHHHH
Confidence 999999876 5678999999999999 99999999973 333 6799999999999876
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=3.3e-23 Score=269.79 Aligned_cols=319 Identities=13% Similarity=0.070 Sum_probs=236.1
Q ss_pred CCCHHHHHHHHHHHhhh-cCCCCCCCcchhhhHHHHHHHHHHHHHHHhC--CCCC-cEEEeCCHHHHHHHHHHhcccccc
Q psy15216 8 PIDPRVVDKMIPYLRVQ-FGNPASRNHIYGWTAEKAIEKARNEVAQLIY--ADPR-EIIWTSGATESNNLAIKGAAHFYK 83 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~-~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g--~~~~-~Iv~t~g~T~al~~~~~~l~~~~~ 83 (2602)
++++.+.+++.+.+... ..++.. ....++.+.+.+++++++| ++++ +|++|+|+++|+++++.++.
T Consensus 43 ~~~~~v~~a~~~~~~~~~~~y~~~------~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~---- 112 (386)
T 1u08_A 43 DGPRYLQERLAHHVAQGANQYAPM------TGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITALV---- 112 (386)
T ss_dssp CCCHHHHHHHHHHHHTTCCSCCCT------TCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHHHHHHHC----
T ss_pred CCCHHHHHHHHHHHHhhccCCCCC------CCCHHHHHHHHHHHHHHhCCCCCCCCCEEEcCChHHHHHHHHHHhC----
Confidence 46789999999988641 122211 1112233444444444457 4677 99999999999999999987
Q ss_pred cCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCC-CCccChHHHHhhccCCceEEEEecccCccccccc---HHHHH
Q psy15216 84 KRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIG 159 (2602)
Q Consensus 84 ~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~-~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~---l~~I~ 159 (2602)
++||+|+++.+.|+++...++. .|++++.++.++ ++.+|+++|++++++++++|++++|+||||.++| +++|.
T Consensus 113 ~~gd~vl~~~p~~~~~~~~~~~---~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~i~ 189 (386)
T 1u08_A 113 RNGDEVICFDPSYDSYAPAIAL---SGGIVKRMALQPPHFRVDWQEFAALLSERTRLVILNTPHNPSATVWQQADFAALW 189 (386)
T ss_dssp CTTCEEEEEESCCTTHHHHHHH---TTCEEEEEECCTTTCCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred CCCCEEEEeCCCchhHHHHHHH---cCCEEEEeecCcccCcCCHHHHHHhhcccCEEEEEeCCCCCCCccCCHHHHHHHH
Confidence 7999999999999998776554 499999999876 5779999999999999999999999999999997 67899
Q ss_pred HHHHhcCCEEEEeccccccc----ccccCC----CCCccEEEeccccccCCCC--cEEEEEecCCCCcccceecCCCccc
Q psy15216 160 ELCRSKGVIFHCDAAQAVGK----IDINIQ----NYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEY 229 (2602)
Q Consensus 160 ~la~~~g~~livD~a~a~g~----~~~dl~----~~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~ 229 (2602)
++|++||+++|+|++|+... ....+. ..+.++++.|+||.+|++| +||+++++++++.+.+...
T Consensus 190 ~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~------ 263 (386)
T 1u08_A 190 QAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVGYCVAPAPISAEIRKVHQ------ 263 (386)
T ss_dssp HHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGCCEEEECCHHHHHHHHHHHH------
T ss_pred HHHHHcCcEEEEEccccccccCCCCCcChhcccCccCcEEEEecchhhcCCcccceEEEEcCHHHHHHHHHHHH------
Confidence 99999999999999997522 111221 2357899999999999888 8999998877666654321
Q ss_pred cccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc---cChhHH
Q psy15216 230 GLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF---IEGESL 306 (2602)
Q Consensus 230 ~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~---~~~~~~ 306 (2602)
...++.+.+...++.++|+....++++.++++.++++++.+.|.+ . ++.+..+.. ..++.+.++. .+..++
T Consensus 264 -~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~---g~~~~~~~~~~~~~~~~~~ 337 (386)
T 1u08_A 264 -YLTFSVNTPAQLALADMLRAEPEHYLALPDFYRQKRDILVNALNE-S-RLEILPCEG---TYFLLVDYSAVSTLDDVEF 337 (386)
T ss_dssp -HHTSSCCHHHHHHHHHHHHHCTHHHHTHHHHHHHHHHHHHHHTTS-S-SCEECCCCB---SSEEEEECTTTCCSCHHHH
T ss_pred -hhccCCChHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHH-C-CCeecCCCc---eEEEEEecCCCCCCCHHHH
Confidence 113455666666676777743456788889999999999999987 3 777764432 2344455554 345666
Q ss_pred HHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 307 LMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 307 ~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
...| +||.+++|..|... ....+++||+++ ++++++++++++|++
T Consensus 338 ~~~l~~~~gi~v~~g~~f~~~---------------~~~~~~iRis~~--~~~~~i~~~~~~l~~ 385 (386)
T 1u08_A 338 CQWLTQEHGVAAIPLSVFCAD---------------PFPHKLIRLCFA--KKESTLLAAAERLRQ 385 (386)
T ss_dssp HHHHHHHSCEECEEGGGGCSS---------------CCCSCEEEEECC--SCHHHHHHHHHHHTT
T ss_pred HHHHHHhCCEEEeCchHhCCC---------------CCCCCEEEEEEc--CCHHHHHHHHHHHhh
Confidence 6654 69999998766431 012378999998 489999999999874
|
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-23 Score=273.45 Aligned_cols=317 Identities=13% Similarity=0.080 Sum_probs=232.9
Q ss_pred CCCHHHHHHHHHHHhhh-cCCCCCCCcchhhhHHHHHHHHHHHHHHHhCC--CCCcEEEeCCHHHHHHHHHHhccccccc
Q psy15216 8 PIDPRVVDKMIPYLRVQ-FGNPASRNHIYGWTAEKAIEKARNEVAQLIYA--DPREIIWTSGATESNNLAIKGAAHFYKK 84 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~-~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~--~~~~Iv~t~g~T~al~~~~~~l~~~~~~ 84 (2602)
++|+.+.+++.+.+... ..++. ......+.+.+.+++.+.+|+ ++++|++|+|+|+|+++++.++. +
T Consensus 43 ~~~~~v~~a~~~~~~~~~~~y~~------~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~----~ 112 (388)
T 1j32_A 43 NTPKHIVEAAKAALEQGKTRYGP------AAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAMI----E 112 (388)
T ss_dssp CCCHHHHHHHHHHHHTTCCSCCC------TTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHC----C
T ss_pred CCCHHHHHHHHHHHhcCCCCCCC------CCCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhc----C
Confidence 46788999998887542 12221 111223444444444444564 66799999999999999999987 7
Q ss_pred CCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCC--CCccChHHHHhhccCCceEEEEecccCccccccc---HHHHH
Q psy15216 85 RGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIG 159 (2602)
Q Consensus 85 ~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~---l~~I~ 159 (2602)
+||+|+++.++|+++...+.. .|++++.++.++ ++.+|+++|++++++++++|++++|+||||.++| +++|.
T Consensus 113 ~gd~vl~~~~~~~~~~~~~~~---~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~i~ 189 (388)
T 1j32_A 113 PGDEVIIPAPFWVSYPEMVKL---AEGTPVILPTTVETQFKVSPEQIRQAITPKTKLLVFNTPSNPTGMVYTPDEVRAIA 189 (388)
T ss_dssp TTCEEEEESSCCTHHHHHHHH---TTCEEEEECCCGGGTTCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred CCCEEEEcCCCChhHHHHHHH---cCCEEEEecCCcccCCCCCHHHHHHhcCcCceEEEEeCCCCCCCcCCCHHHHHHHH
Confidence 999999999999998766654 499999999875 5678999999999999999999999999999986 88999
Q ss_pred HHHHhcCCEEEEecccccccc----cccCCC-----CCccEEEeccccccCCCC--cEEEEEecCCCCcccceecCCCcc
Q psy15216 160 ELCRSKGVIFHCDAAQAVGKI----DINIQN-----YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHE 228 (2602)
Q Consensus 160 ~la~~~g~~livD~a~a~g~~----~~dl~~-----~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g~~~~ 228 (2602)
++|++||+++|+|++|+.... ...+.. .+.++++.|+||++|++| +||+++++++++.+.+...++
T Consensus 190 ~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~--- 266 (388)
T 1j32_A 190 QVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWRVGFLAGPVPLVKAATKIQGHS--- 266 (388)
T ss_dssp HHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTTCCEEEECCHHHHHHHHHHHHTT---
T ss_pred HHHHHcCCEEEEEccchhcccCCCCCCCHHHccccccCCEEEEeechhccCCcccceEEEEeCHHHHHHHHHHHhhc---
Confidence 999999999999999875432 111111 346899999999989888 899999887766665433211
Q ss_pred ccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEc--ccChhHH
Q psy15216 229 YGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN--FIEGESL 306 (2602)
Q Consensus 229 ~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~--~~~~~~~ 306 (2602)
..+++.....++.++|+....++++..+++.++++++.+.|.+ ++++.+..+... ....+.++ ..+..++
T Consensus 267 ----~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~~---~~~~~~~~~~~~~~~~~ 338 (388)
T 1j32_A 267 ----TSNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNA-MPGLECPKPDGA---FYMFPSIAKTGRSSLDF 338 (388)
T ss_dssp ----TCSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHT-CTTCBCCCCCBT---TEECCBCGGGTCCHHHH
T ss_pred ----ccCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHhh-CCCCcccCCCee---EEEEEecCCCCCCHHHH
Confidence 1234444555555666533345778888999999999999987 678776644321 22222333 2355667
Q ss_pred HHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 307 LMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 307 ~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
...| +||.+++|..|.. .+++|++++ ++++++++++++|++.
T Consensus 339 ~~~l~~~~gi~v~~g~~~~~-------------------~~~iRis~~--~~~~~i~~~~~~l~~~ 383 (388)
T 1j32_A 339 CSELLDQHQVATVPGAAFGA-------------------DDCIRLSYA--TDLDTIKRGMERLEKF 383 (388)
T ss_dssp HHHHHHHHCEECEEGGGGTC-------------------TTBEEEECC--SCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCEEEeChhhhCC-------------------CCcEEEEec--CCHHHHHHHHHHHHHH
Confidence 6666 4999998876643 278999997 6899999999999863
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-23 Score=272.69 Aligned_cols=313 Identities=17% Similarity=0.154 Sum_probs=240.1
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCC
Q psy15216 1404 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK 1483 (2602)
Q Consensus 1404 ~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd 1483 (2602)
+.++.+.+++.+.++....++.. ....++|+.+++++++++++|++|+|+|+|+..++.++. ++||
T Consensus 38 ~~~~~v~~a~~~~~~~~~~y~~~----------~~~~~l~~~la~~~~~~~~~v~~~~g~~~a~~~~~~~~~----~~gd 103 (381)
T 1v2d_A 38 PPPPFLLEAVRRALGRQDQYAPP----------AGLPALREALAEEFAVEPESVVVTSGATEALYVLLQSLV----GPGD 103 (381)
T ss_dssp CCCHHHHHHHHHHTTTSCSCCCT----------TCCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHHC----CTTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCC----------CCCHHHHHHHHHhcCCChhhEEEcCChHHHHHHHHHHhC----CCCC
Confidence 46788999999888641112211 124689999999999988899999999999999999986 7999
Q ss_pred EEEEcCCCCcchHHHHHHHHhCCcEEEEeccC---CCCCcChhHHHhhccCCceEEEEeccccccccccC---hHHHHHH
Q psy15216 1484 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPK---NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIGEL 1557 (2602)
Q Consensus 1484 ~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~---~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~---l~~I~~i 1557 (2602)
+|++++++|+++...++. .|++++.++.+ +++.+|+++|++++++++++|++++|+||||.++| +++|.++
T Consensus 104 ~Vl~~~~~~~~~~~~~~~---~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~ 180 (381)
T 1v2d_A 104 EVVVLEPFFDVYLPDAFL---AGAKARLVRLDLTPEGFRLDLSALEKALTPRTRALLLNTPMNPTGLVFGERELEAIARL 180 (381)
T ss_dssp EEEEEESCCTTHHHHHHH---TTCEEEEEECEEETTEEECCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHH
T ss_pred EEEEcCCCchhHHHHHHH---cCCEEEEEeCCCCCccCCcCHHHHHHhcCcCCEEEEECCCCCCCCCccCHHHHHHHHHH
Confidence 999999999998765544 49999999986 45779999999999999999999999999999998 8899999
Q ss_pred hhhcCCEEEEecccccCc---ccccCC--CCCccEEEEccccccCCCc--eEEEEEecCCCCccccccccCCccccCCCC
Q psy15216 1558 CRSKGVIFHCDAAQAVGK---IDINIQ--NYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSG 1630 (2602)
Q Consensus 1558 a~~~gi~vivD~a~~~g~---~~~~l~--~~~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~g 1630 (2602)
|++||+++|+|++|+.+. .+.++. ..+.|+++.|+||.+|++| +||+++++++++.+..... ...+
T Consensus 181 ~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~-------~~~~ 253 (381)
T 1v2d_A 181 ARAHDLFLISDEVYDELYYGERPRRLREFAPERTFTVGSAGKRLEATGYRVGWIVGPKEFMPRLAGMRQ-------WTSF 253 (381)
T ss_dssp HHHTTCEEEEECTTTTCBSSSCCCCHHHHCTTTEEEEEEHHHHTTCGGGCCEEEECCTTTHHHHHHHHH-------HHTS
T ss_pred HHHcCCEEEEEcCccccccCCCCCCHHHhcCCCEEEEeechhhcCCcccceEEEEeCHHHHHHHHHHHh-------hccc
Confidence 999999999999997532 222222 3468999999999888778 8999998877666543221 1134
Q ss_pred CcchhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecCCcHHHHHhc--
Q psy15216 1631 TLATHQIVGMGEAFRLA--RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI-- 1706 (2602)
Q Consensus 1631 t~~~~~~~al~~aL~~~--~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~L-- 1706 (2602)
+.+.+.+.++.++|+.. ..++++.++++.++++++.+.|.+ .++.+..+.. .....+.++..+ +...+
T Consensus 254 ~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~--~g~~~~~~~~---~~~~~~~~~~~~---~~~~l~~ 325 (381)
T 1v2d_A 254 SAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRA--MGLRVYVPEG---TYFLMAELPGWD---AFRLVEE 325 (381)
T ss_dssp SCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH--TTCCEECCSB---SSEEEEECTTCC---HHHHHHH
T ss_pred CCCcHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHH--CCCEecCCCc---ceEEEEecChHh---HHHHHHh
Confidence 56667777777888754 456788899999999999999988 4777664421 122333333222 43333
Q ss_pred CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1707 KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1707 ~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
+||.+++|..|... ....+++||+++. +.+++++++++|++.
T Consensus 326 ~gi~v~~g~~~~~~---------------~~~~~~iRi~~~~--~~~~i~~~~~~l~~~ 367 (381)
T 1v2d_A 326 ARVALIPASAFYLE---------------DPPKDLFRFAFCK--TEEELHLALERLGRV 367 (381)
T ss_dssp TCEECEEGGGGCSS---------------SCCTTEEEEECCS--CHHHHHHHHHHHHHH
T ss_pred CCEEEecchHhCCC---------------CCCCCEEEEEeCC--CHHHHHHHHHHHHHH
Confidence 79999999877541 0113799999986 899999999999873
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.9e-23 Score=277.12 Aligned_cols=325 Identities=14% Similarity=0.099 Sum_probs=243.0
Q ss_pred CCCHHHHHHHHHHHhh-h-cCCCCCCCcchhhhHHHHHHHHHHHHHHHhC------CCCCcEEEeCCHHHHHHHHHHhcc
Q psy15216 8 PIDPRVVDKMIPYLRV-Q-FGNPASRNHIYGWTAEKAIEKARNEVAQLIY------ADPREIIWTSGATESNNLAIKGAA 79 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~-~-~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g------~~~~~Iv~t~g~T~al~~~~~~l~ 79 (2602)
++++.+.+++.+.+.. . ..++.. ....++|+.++++++ +++++|++|+|+|+|+++++.++.
T Consensus 57 ~~~~~v~~a~~~~~~~~~~~~y~~~----------~g~~~lr~~la~~~~~~~g~~~~~~~i~~t~g~t~al~~~~~~l~ 126 (437)
T 3g0t_A 57 PAPQIGIETEIQKLREGVASIYPNL----------DGLPELKQEASRFAKLFVNIDIPARACVPTVGSMQGCFVSFLVAN 126 (437)
T ss_dssp CCCHHHHHHHHHHHHHTGGGSCCCT----------TCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhCCcCcCCCCC----------CChHHHHHHHHHHHHHhhCCCCCcccEEEeCCHHHHHHHHHHHHh
Confidence 5789999999998874 2 223321 113456777777765 567899999999999999999874
Q ss_pred cccccCCC--EEEEcCCCCcccHHHHHHHHhCCcEEEEeccCC-CCccChHHHHhhc-cCCceEEEEecccCccccccc-
Q psy15216 80 HFYKKRGK--HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NGLITLSQLEEKI-CSDTILVSVMLVNNEIGVIQP- 154 (2602)
Q Consensus 80 ~~~~~~gd--~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~-~~~ld~e~l~~~i-~~~tklv~i~~~~npTG~~~~- 154 (2602)
.+++|| +|+++.+.|+++...+... |++++.+++++ ++.+|+++|++++ ++++++|++++|+||||.++|
T Consensus 127 --~~~~gd~~~Vl~~~p~~~~~~~~~~~~---g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~v~l~~p~nptG~~~~~ 201 (437)
T 3g0t_A 127 --RTHKNREYGTLFIDPGFNLNKLQCRIL---GQKFESFDLFEYRGEKLREKLESYLQTGQFCSIIYSNPNNPTWQCMTD 201 (437)
T ss_dssp --TSCTTCSCCEEEEESCCHHHHHHHHHH---TCCCEEEEGGGGCTTHHHHHHHHHHTTTCCCEEEEESSCTTTCCCCCH
T ss_pred --cCCCCCccEEEEeCCCcHhHHHHHHHc---CCEEEEEeecCCCCccCHHHHHHHHhcCCceEEEEeCCCCCCCCcCCH
Confidence 025899 9999999999988877766 99999999864 4568999999999 788999999999999999998
Q ss_pred --HHHHHHHHHhcCCEEEEeccccccc----ccc--------cCCC-CCccEEEeccccccCCCC--cEEEEEecCCCC-
Q psy15216 155 --ILEIGELCRSKGVIFHCDAAQAVGK----IDI--------NIQN-YKVDLMSFSAHKIYGPKG--IGALYIRRNPRT- 216 (2602)
Q Consensus 155 --l~~I~~la~~~g~~livD~a~a~g~----~~~--------dl~~-~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~- 216 (2602)
+++|+++|++||+++|+|++|+... .++ .+.. .+.++++.|+||.+|++| +||+++++++++
T Consensus 202 ~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~ 281 (437)
T 3g0t_A 202 EELRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPGEPLYQPSVANYTDNYILALSSSKAFSYAGQRIGVLMISGKLYER 281 (437)
T ss_dssp HHHHHHHHHHHHTTCEEEEECTTTTCCTTSCCCSTTSSCCCCCGGGTCSCEEEEEESTTTTSCGGGCCEEEEECHHHHHC
T ss_pred HHHHHHHHHHHHCCcEEEEEcchhhcccCCCcCcccccchhhccCCCCCcEEEEEcCccCCCCccceeEEEEECHHHhhh
Confidence 6668999999999999999997522 121 2222 456799999999988777 899999887666
Q ss_pred cccceecCC----------CccccccccCcchhHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHhhccCceEEe
Q psy15216 217 RIEAQIHGG----------GHEYGLRSGTLATHQIVGMGEAFRLARIE---MKEELKRILFLQKRLYNGLMESIEEIYIN 283 (2602)
Q Consensus 217 ~l~~~~~g~----------~~~~~~~~gt~~~~~~~al~~al~~~~~~---~~~~~~~~~~l~~~l~~~L~~~~~g~~l~ 283 (2602)
.+.....+. ........++++.....++.++++....+ +++..+++.++++++.+.|.+ . ++.+.
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~ 359 (437)
T 3g0t_A 282 EYPDLEESFGRLRFGEALSSSALYALSSGATHSAQWGMAAMLKACNDGEYNFRDSVIEYGRKARIMKKMFLD-N-GFNIV 359 (437)
T ss_dssp BCGGGHHHHSCSBHHHHHHTTHHHHHHSSSCHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHT-T-TEEES
T ss_pred hhhcccccccccchhHHHHHHHHhhhcCCCCHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHH-c-CCEEe
Confidence 511100000 00011124567777788787888754434 789999999999999999988 4 88876
Q ss_pred ------CCCCCCCCceEEEEEcccChhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCC
Q psy15216 284 ------GDMNNRIPHNLNISFNFIEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTT 355 (2602)
Q Consensus 284 ------~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t 355 (2602)
.++. ...+..+.++..+..++...| +||.++++..|... ..+++||+++ +.+
T Consensus 360 ~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~L~~~gi~v~~~~~~~~~-----------------~~~~iRis~~-~~~ 419 (437)
T 3g0t_A 360 YDKDGNEPLA--DGFYFTVGYKGMDSSKLIEKFVRYGMCAITLKTTGSK-----------------RNEAMRICTS-LLP 419 (437)
T ss_dssp SCEETTEECC--SSSEEEEEETTCCHHHHHHHHHHTTEECEESTTTTCC-----------------CTTCEEEECS-SSC
T ss_pred ccccCCCCCc--eeEEEEEecCCCCHHHHHHHHHHcCeEEeeccccCCC-----------------CCCEEEEEEe-cCC
Confidence 2311 134455666656777787777 79999988877542 1278999998 449
Q ss_pred HHHHHHHHHHHHhh
Q psy15216 356 EKEIDFTIKLLKMK 369 (2602)
Q Consensus 356 ~edid~li~~L~~~ 369 (2602)
++++++++++|++.
T Consensus 420 ~e~i~~~~~~l~~~ 433 (437)
T 3g0t_A 420 ESQFPDLEKRLQML 433 (437)
T ss_dssp GGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999863
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-23 Score=274.08 Aligned_cols=321 Identities=15% Similarity=0.127 Sum_probs=243.5
Q ss_pred CCCCCHHHHHHHHHHHhhc-cCCCCCccchhHHHHHHHHHHHHHHHHHHhC--CCCCcEEEeCCHHHHHHHHHHhhhhhh
Q psy15216 1402 TTPIDPRVVDKMIPYLRVQ-FGNPASRNHIYGWTAEKAIEKARNEVAQLIY--ADPREIIWTSGATESNNLAIKGAAHFY 1478 (2602)
Q Consensus 1402 ~~~~~~~v~eal~~~l~~~-~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g--~~~~~iv~t~gaT~al~~al~~l~~~~ 1478 (2602)
..+.++.+.+++.+.+... .+++.. ..++.+++++.+++.+| +++++|++|+|+|+|+++++.++.
T Consensus 38 ~~~~~~~v~~a~~~~~~~~~~~y~~~--------~~~l~~~la~~l~~~~g~~~~~~~i~~~~g~~~a~~~~~~~l~--- 106 (391)
T 3dzz_A 38 DFKIAPEIMASMEEKLKVAAFGYESV--------PAEYYKAVADWEEIEHRARPKEDWCVFASGVVPAISAMVRQFT--- 106 (391)
T ss_dssp SSCCCHHHHHHHHHHHTTCCCCCBCC--------CHHHHHHHHHHHHHHHSCCCCGGGEEEESCHHHHHHHHHHHHS---
T ss_pred CCCCCHHHHHHHHHHHhcCcCCCCCC--------CHHHHHHHHHHHHHHhCCCCCHHHEEECCCHHHHHHHHHHHhC---
Confidence 3467889999999988652 222211 24567778888888888 678899999999999999999986
Q ss_pred ccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCC---CCCcChhHHHhhcc-CCceEEEEeccccccccccC---h
Q psy15216 1479 KKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN---NGLITLSQLEEKIC-SDTILVSVMLVNNEIGVIQP---I 1551 (2602)
Q Consensus 1479 ~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~---~~~id~d~l~~~i~-~~t~lv~l~~~~n~tG~~~~---l 1551 (2602)
++||+|+++.++|+++...+... |++++.++.++ ++.+|+++|+++++ +++++|++++|+||||.++| +
T Consensus 107 -~~gd~vl~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~~p~nptG~~~~~~~l 182 (391)
T 3dzz_A 107 -SPGDQILVQEPVYNMFYSVIEGN---GRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFCNPHNPIGYAWSEEEV 182 (391)
T ss_dssp -CTTCEEEECSSCCHHHHHHHHHT---TCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEESSBTTTTBCCCHHHH
T ss_pred -CCCCeEEECCCCcHHHHHHHHHc---CCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEEECCCCCCCcccCHHHH
Confidence 89999999999999987766554 99999998852 23489999999998 79999999999999999954 8
Q ss_pred HHHHHHhhhcCCEEEEecccccCc----ccccCCCCC---cc--EEEEccccccCCCc--eEEEEEe-cCCCCccccccc
Q psy15216 1552 LEIGELCRSKGVIFHCDAAQAVGK----IDINIQNYK---VD--LMSFSAHKIYGPKG--IGALYIR-RNPRTRIEAQIH 1619 (2602)
Q Consensus 1552 ~~I~~ia~~~gi~vivD~a~~~g~----~~~~l~~~~---~D--~~v~S~~K~~gp~G--~G~l~~~-~~~~~~l~~~~~ 1619 (2602)
++|.++|++||+++|+|++|+... .+.++..+. .| +++.|+||.+|++| +|+++++ +++.+.+.....
T Consensus 183 ~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~ 262 (391)
T 3dzz_A 183 KRIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWDAKNWVVSLISPSKTFNLAALHAACAIIPNPDLRARAEESFF 262 (391)
T ss_dssp HHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGSCTTTGGGEEEEECSHHHHTCTTTCCEEEECCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCEEEEecccccccCCCCCceehhhcCccccCcEEEEEeChhhccccchhheEEEECCHHHHHHHHHHHH
Confidence 889999999999999999997432 223333332 55 88999999777666 8999987 655555543321
Q ss_pred cCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEec--C
Q psy15216 1620 GGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF--I 1697 (2602)
Q Consensus 1620 g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~--~ 1697 (2602)
....++++...+.++.+++......+++..+++.++++++.+.|.+.++++.+..+... ....+.++. .
T Consensus 263 ------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 333 (391)
T 3dzz_A 263 ------LAGIGEPNLLAIPAAIAAYEEGHDWLRELKQVLRDNFAYAREFLAKEVPEVKVLDSNAS---YLAWVDISALGM 333 (391)
T ss_dssp ------HHTCSSCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECCCCBS---SEEEEECGGGCS
T ss_pred ------hhccCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEeccCce---EEEEEehhhcCC
Confidence 11234567777777777777545567888899999999999999875678877644322 223344543 3
Q ss_pred CcHHHHHhc---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1698 EGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1698 ~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
+..++...| +||.+++|..|... ..+++|++++ ++.+++++++++|++.
T Consensus 334 ~~~~~~~~l~~~~gi~v~~g~~~~~~-----------------~~~~iRis~~--~~~~~i~~~l~~l~~~ 385 (391)
T 3dzz_A 334 NAEDFCKYLREKTGLIISAGNGYRGN-----------------GHEFVRINLA--CPKELVIDGMQRLKQG 385 (391)
T ss_dssp CHHHHHHHHHHHHCEECEESGGGCTT-----------------GGGEEEEECC--SCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCEEEeCchhhCCC-----------------CCCEEEEEec--CCHHHHHHHHHHHHHH
Confidence 556666655 59999999887643 1389999998 6899999999999973
|
| >2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.7e-23 Score=268.29 Aligned_cols=336 Identities=12% Similarity=0.080 Sum_probs=235.7
Q ss_pred CCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccC
Q psy15216 1402 TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKR 1481 (2602)
Q Consensus 1402 ~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~ 1481 (2602)
..+.++.+++++.+.++..+.+|+ ....++|+.+++++|.+ ++++|+|+|+|++.++.++.. .+++
T Consensus 8 ~~~~~~~v~~a~~~~~~~~~~~~~-----------~~~~~l~~~la~~~~~~--~v~~~~ggt~al~~~~~~~~~-~~~~ 73 (375)
T 2fnu_A 8 EPCLDKEDKKAVLEVLNSKQLTQG-----------KRSLLFEEALCEFLGVK--HALVFNSATSALLTLYRNFSE-FSAD 73 (375)
T ss_dssp CCCCCHHHHHHHHHHHTSSCCSSS-----------HHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHSSC-CCTT
T ss_pred CCCCCHHHHHHHHHHHHcCcccCC-----------hHHHHHHHHHHHHhCCC--eEEEeCCHHHHHHHHHHHhcc-cCCC
Confidence 457788999999999875433332 24678999999999976 899999999999999999820 0279
Q ss_pred CCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccCCceEEEEeccccccccccChHHHHHHhhhc
Q psy15216 1482 GKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSK 1561 (2602)
Q Consensus 1482 gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~~ia~~~ 1561 (2602)
||+|++++++|+++...+... |++++.++.++++.+|+++|+++++++|++|+++|+ ||.+.|+++|.++|++|
T Consensus 74 gd~Vl~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~---tG~~~~l~~i~~l~~~~ 147 (375)
T 2fnu_A 74 RNEIITTPISFVATANMLLES---GYTPVFAGIKNDGNIDELALEKLINERTKAIVSVDY---AGKSVEVESVQKLCKKH 147 (375)
T ss_dssp SCEEEECSSSCTHHHHHHHHT---TCEEEECCBCTTSSBCGGGSGGGCCTTEEEEEEECG---GGCCCCHHHHHHHHHHH
T ss_pred CCEEEECCCccHhHHHHHHHC---CCEEEEeccCCCCCCCHHHHHhhcCcCceEEEEeCC---cCCccCHHHHHHHHHHc
Confidence 999999999999998877654 999999999887789999999999999999988887 99999999999999999
Q ss_pred CCEEEEecccccCccccc--CCCCCccEEEEccc--cccCCCceEEEEEe--cCCCCccccccccCCc---cccCC---C
Q psy15216 1562 GVIFHCDAAQAVGKIDIN--IQNYKVDLMSFSAH--KIYGPKGIGALYIR--RNPRTRIEAQIHGGGH---EYGLR---S 1629 (2602)
Q Consensus 1562 gi~vivD~a~~~g~~~~~--l~~~~~D~~v~S~~--K~~gp~G~G~l~~~--~~~~~~l~~~~~g~~~---~~~~~---~ 1629 (2602)
|+++|+|++|+.+..+.. +..++ |++++|++ |++|+ |+|+++++ +++.+.+.+...++.. +..+. .
T Consensus 148 ~~~li~D~a~~~~~~~~~~~~~~~~-~i~~~s~s~~K~~~~-g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (375)
T 2fnu_A 148 SLSFLSDSSHALGSEYQNKKVGGFA-LASVFSFHAIKPITT-AEGGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVKSI 225 (375)
T ss_dssp TCEEEEECTTCTTCEETTEETTSSS-SEEEEECCTTSSSCC-SSCEEEEESCHHHHHHHHHHTBTTEEESSSSCEEESSC
T ss_pred CCEEEEECccccCCeECCeeccccC-CeEEEeCCCCCCccc-cCceEEEeCCHHHHHHHHHHHhcCCccccccccccccc
Confidence 999999999998865432 33333 55655555 98888 89999985 3355555544332221 11111 1
Q ss_pred CCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCC--CCCCCceEEEEEecC---CcHHHH
Q psy15216 1630 GTL-ATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDM--NNRIPHNLNISFNFI---EGESLL 1703 (2602)
Q Consensus 1630 gt~-~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~--~~~~~~~~~~~~~~~---~~~~~~ 1703 (2602)
+.. ....+.+. .++. ...++++..++..++++++.+.|.+ ++++.+..++ ....+....+.++.. +..++.
T Consensus 226 ~~~~~~~~~~~a-~~~~-~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 302 (375)
T 2fnu_A 226 GHNFRLNEIQSA-LGLS-QLKKAPFLMQKREEAALTYDRIFKD-NPYFTPLHPLLKDKSSNHLYPILMHQKFFTCKKLIL 302 (375)
T ss_dssp CCBCCCCHHHHH-HHHH-HHTTHHHHHHHHHHHHHHHHHHHTT-CSSEEESGGGCSSCCCCSCEEEEECGGGGGGHHHHH
T ss_pred cccCCCCHHHHH-HHHH-HHHHHHHHHHHHHHHHHHHHHHhhc-CCCccccCCCCCCCcceEEEEEEeCccccchHHHHH
Confidence 111 12222211 1221 1245678888999999999999988 7888887542 122334445666542 456676
Q ss_pred Hhc--CCEEEccccccCCCCCChhHHHHHcC---C--CccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1704 MAI--KDIAVSSGSACTSASLEPSYVLRALG---C--NDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1704 ~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~---~--~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
..| +||.++. .|.+.+..+.+.. .+. . ......+++||+++.++|.+|+++++++|++.
T Consensus 303 ~~L~~~gi~v~~--~~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~ 368 (375)
T 2fnu_A 303 ESLHKRGILAQV--HYKPIYQYQLYQQ-LFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHSVLKT 368 (375)
T ss_dssp HHHHHTTEECBC--CCCCGGGSHHHHH-HHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCccc--cccccccchhhhc-CCCccCChHHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 666 7999873 3332211111110 000 0 00112368999999999999999999999973
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A | Back alignment and structure |
|---|
Probab=99.91 E-value=5.6e-23 Score=265.77 Aligned_cols=302 Identities=13% Similarity=0.076 Sum_probs=232.5
Q ss_pred CCCHHHHHHHHHHHhhh----cCCCCCCCcchhhhHHHHHHHHHHHHHHH------hCCCCCcEEEeCCHHHHHHHHHHh
Q psy15216 8 PIDPRVVDKMIPYLRVQ----FGNPASRNHIYGWTAEKAIEKARNEVAQL------IYADPREIIWTSGATESNNLAIKG 77 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~----~~~p~~~~~~~~~~~~~~~~~~r~~lA~~------~g~~~~~Iv~t~g~T~al~~~~~~ 77 (2602)
++++.+.+++.+.+... ..++.. . ..++|++++++ +++++++|++++|+++++++++.+
T Consensus 43 ~~~~~v~~a~~~~~~~~~~~~~~y~~~------~-----~~~l~~~la~~l~~~~g~~~~~~~v~~~~G~~~al~~~~~~ 111 (369)
T 3cq5_A 43 PPSEALVADLVATVDKIATELNRYPER------D-----AVELRDELAAYITKQTGVAVTRDNLWAANGSNEILQQLLQA 111 (369)
T ss_dssp CCCHHHHHHHHHHHHHHGGGTTSCCCT------T-----CHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcccccccCCCc------c-----HHHHHHHHHHhhhhcccCCCChHhEEECCChHHHHHHHHHH
Confidence 57889999999988652 122211 0 13566666666 455778999999999999999999
Q ss_pred cccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccC-CceEEEEecccCcccccccHH
Q psy15216 78 AAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS-DTILVSVMLVNNEIGVIQPIL 156 (2602)
Q Consensus 78 l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~-~tklv~i~~~~npTG~~~~l~ 156 (2602)
+. ++||+|+++.++|+++...+.. .|++++.++.++++.+|++++++++++ ++++|++++|+||||.++|++
T Consensus 112 l~----~~gd~Vl~~~~~y~~~~~~~~~---~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~~~ 184 (369)
T 3cq5_A 112 FG----GPGRTALGFQPSYSMHPILAKG---THTEFIAVSRGADFRIDMDVALEEIRAKQPDIVFVTTPNNPTGDVTSLD 184 (369)
T ss_dssp HC----STTCEEEEEESSCTHHHHHHHH---TTCEEEEEECCTTSSCCHHHHHHHHHHHCCSEEEEESSCTTTCCCCCHH
T ss_pred hc----CCCCEEEEcCCChHHHHHHHHH---cCCEEEEecCCcCCCCCHHHHHHHhhccCCCEEEEeCCCCCCCCCCCHH
Confidence 87 7999999999999998776554 499999999887778999999999987 899999999999999999999
Q ss_pred HHHHHHHhcCCEEEEeccccccccc---ccC-CCCC-ccEEEeccccccCCCC--cEEEEEecCCCCcccceecCCCccc
Q psy15216 157 EIGELCRSKGVIFHCDAAQAVGKID---INI-QNYK-VDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEY 229 (2602)
Q Consensus 157 ~I~~la~~~g~~livD~a~a~g~~~---~dl-~~~~-~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~ 229 (2602)
++.++++.+++++|+|++|+.+... ..+ ...+ .++++.|+||.+|++| +||+++++++++.+.+..
T Consensus 185 ~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~------- 257 (369)
T 3cq5_A 185 DVERIINVAPGIVIVDEAYAEFSPSPSATTLLEKYPTKLVVSRTMSKAFDFAGGRLGYFVANPAFIDAVMLVR------- 257 (369)
T ss_dssp HHHHHHHHCSSEEEEECTTGGGCCSCCGGGGTTTCTTTEEEEEESSSTTSCGGGCCEEEEECTHHHHHHHTTS-------
T ss_pred HHHHHHHhCCCEEEEECCchhhcCCcchHHHHhhCCCCEEEEEechHhcCCcccceEEEEeCHHHHHHHHHcC-------
Confidence 9999999999999999999866532 222 2344 5699999999888777 799999987666554332
Q ss_pred cccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcccChhHHHHH
Q psy15216 230 GLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMA 309 (2602)
Q Consensus 230 ~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (2602)
..++++.....++.++++. ..++++..+++.++++++.+.|.+ +++.+..+ . ..++.+.++ .+..++...
T Consensus 258 --~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~l~~~L~~--~g~~~~~~-~---~~~~~~~~~-~~~~~l~~~ 327 (369)
T 3cq5_A 258 --LPYHLSALSQAAAIVALRH-SADTLGTVEKLSVERVRVAARLEE--LGYAVVPS-E---SNFVFFGDF-SDQHAAWQA 327 (369)
T ss_dssp --CTTCSCHHHHHHHHHHHHT-HHHHHTHHHHHHHHHHHHHHHHHH--HTCEEECC-S---SSEEEEECC-SSHHHHHHH
T ss_pred --CCCCCCHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHh--CCCEECCC-C---CeEEEEECC-CCHHHHHHH
Confidence 1235677777777777764 245678888999999999999987 47777632 2 233344444 456667666
Q ss_pred h--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 310 I--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 310 L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
| +||.++++. . ++++||+++ +++|+++++++|++.
T Consensus 328 l~~~gi~v~~~~---~-------------------~~~iRis~~---~~~~i~~~~~~l~~~ 364 (369)
T 3cq5_A 328 FLDRGVLIRDVG---I-------------------AGHLRTTIG---VPEENDAFLDAAAEI 364 (369)
T ss_dssp HHHTTEECBCCS---C-------------------TTEEEEECC---CHHHHHHHHHHHHHH
T ss_pred HHHCCEEEEECC---C-------------------CCeEEEEeC---CHHHHHHHHHHHHHH
Confidence 6 799998761 1 278999998 899999999999864
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.91 E-value=3e-23 Score=272.52 Aligned_cols=328 Identities=15% Similarity=0.104 Sum_probs=237.0
Q ss_pred CCCHHHHHHHHHHHhhh-cCCCCCCCcchhhhHHHHHHHHHHHHHHHhCC--CCC-cEEEeCCHHHHHHHHHHhcccccc
Q psy15216 8 PIDPRVVDKMIPYLRVQ-FGNPASRNHIYGWTAEKAIEKARNEVAQLIYA--DPR-EIIWTSGATESNNLAIKGAAHFYK 83 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~-~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~--~~~-~Iv~t~g~T~al~~~~~~l~~~~~ 83 (2602)
++++.+.+++.+.+... ..++.. .....+.+.+.+++.+.+|. +++ +|++|+|+++|+.+++.++.
T Consensus 38 ~~~~~v~~a~~~~~~~~~~~y~~~------~g~~~l~~~la~~~~~~~g~~~~~~~~v~~t~g~~~al~~~~~~~~---- 107 (411)
T 2o0r_A 38 DGPPKMLQAAQDAIAGGVNQYPPG------PGSAPLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAAAVLGLV---- 107 (411)
T ss_dssp CCCHHHHHHHHHHHHTTCCSCCCT------TCCHHHHHHHHHHHHHHHCCCCCTTTSEEEEEHHHHHHHHHHHHHC----
T ss_pred CCCHHHHHHHHHHHhcCCCCCCCC------CCCHHHHHHHHHHHHHHcCCCCCCCceEEEeCCHHHHHHHHHHHhc----
Confidence 56789999999988651 222211 11123334444444444474 577 99999999999999999987
Q ss_pred cCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCC---CCccChHHHHhhccCCceEEEEecccCcccccccH---HH
Q psy15216 84 KRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN---NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPI---LE 157 (2602)
Q Consensus 84 ~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~---~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l---~~ 157 (2602)
++||+|+++.++|+++...+.. .|++++.++.++ ++.+|+++|++++++++++|++++|+||||.++|. ++
T Consensus 108 ~~gd~Vl~~~~~y~~~~~~~~~---~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~v~l~~~~nptG~~~~~~~l~~ 184 (411)
T 2o0r_A 108 EPGSEVLLIEPFYDSYSPVVAM---AGAHRVTVPLVPDGRGFALDADALRRAVTPRTRALIINSPHNPTGAVLSATELAA 184 (411)
T ss_dssp CTTCEEEEEESCCTTHHHHHHH---TTCEEEEEECEEETTEEECCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHH
T ss_pred CCCCEEEEeCCCcHhHHHHHHH---cCCEEEEeeccccccCCCCCHHHHHHhhccCceEEEEeCCCCCCCCCCCHHHHHH
Confidence 7999999999999998766554 499999998765 35689999999999999999999999999999885 88
Q ss_pred HHHHHHhcCCEEEEecccccccc----cccCC---C-CCccEEEeccccccCCCC--cEEEEEecCCCCcccceecCCCc
Q psy15216 158 IGELCRSKGVIFHCDAAQAVGKI----DINIQ---N-YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGH 227 (2602)
Q Consensus 158 I~~la~~~g~~livD~a~a~g~~----~~dl~---~-~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g~~~ 227 (2602)
|.++|++||+++|+|++|+.+.. +..+. . .+.|+++.|+||.+|++| +||+++++++++.+.+...
T Consensus 185 i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~---- 260 (411)
T 2o0r_A 185 IAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKMFNCTGWKIGWACGPAELIAGVRAAKQ---- 260 (411)
T ss_dssp HHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCTTTCEEEEECCHHHHHHHHHHHH----
T ss_pred HHHHHHHcCCEEEEEccccccccCCCCCcChhhccCCCCCEEEEeechhhcCCccceEEEEeeCHHHHHHHHHHHh----
Confidence 99999999999999999986432 12221 1 467899999999999888 8999998877666654321
Q ss_pred cccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc---cChh
Q psy15216 228 EYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF---IEGE 304 (2602)
Q Consensus 228 ~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~---~~~~ 304 (2602)
...++.+.+...++.++|+....++++..+++.++++++.+.|.+ . ++.+..+.. +.++.+.++. .+..
T Consensus 261 ---~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~---g~~~~~~~~~~~~~~~~ 332 (411)
T 2o0r_A 261 ---YLSYVGGAPFQPAVALALDTEDAWVAALRNSLRARRDRLAAGLTE-I-GFAVHDSYG---TYFLCADPRPLGYDDST 332 (411)
T ss_dssp ---HHTSCCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH-H-TCEECCCCB---SSEEEEECGGGTCCCHH
T ss_pred ---hccCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHH-c-CCEecCCCe---eEEEEEecCCCCCCCHH
Confidence 112345556666666777744556788899999999999999987 3 777764432 2344555554 3455
Q ss_pred HHHHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 305 SLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 305 ~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
++...| +||.+++|..|.+....+++.+. + ...+++||+++ ++++++++++++|++
T Consensus 333 ~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~--~----~~~~~iRis~~--~~~e~i~~~~~~l~~ 391 (411)
T 2o0r_A 333 EFCAALPEKVGVAAIPMSAFCDPAAGQASQQA--D----VWNHLVRFTFC--KRDDTLDEAIRRLSV 391 (411)
T ss_dssp HHHHHHHHHHSEECEEGGGGSCCC----------C----CGGGCEEEECC--SCHHHHHHHHHHHGG
T ss_pred HHHHHHHHhCCEEEcChhhhCCCccccccccc--c----CCCCeEEEEec--CCHHHHHHHHHHHHH
Confidence 666655 59999999877432111111111 0 01378999997 489999999999986
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.2e-23 Score=270.70 Aligned_cols=312 Identities=12% Similarity=0.096 Sum_probs=236.0
Q ss_pred CCCHHHHHHHHHHHhh-hcCCCCCCCcchhhhHHHHHHHHHHHHHHHhC------CCCCcEEEeCCHHHHHHHHHHhccc
Q psy15216 8 PIDPRVVDKMIPYLRV-QFGNPASRNHIYGWTAEKAIEKARNEVAQLIY------ADPREIIWTSGATESNNLAIKGAAH 80 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~-~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g------~~~~~Iv~t~g~T~al~~~~~~l~~ 80 (2602)
++++.+.+++.+.+.. ...++.. . .++|+.++++++ +++++|++|+|+++|++.++.++.
T Consensus 36 ~~~~~v~~a~~~~~~~~~~~y~~~-----------~-~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~a~~~~~~~~~- 102 (377)
T 3fdb_A 36 STCPAVLQAITDAVQREAFGYQPD-----------G-SLLSQATAEFYADRYGYQARPEWIFPIPDVVRGLYIAIDHFT- 102 (377)
T ss_dssp CCCHHHHHHHHHHHHTTCCSSCCS-----------S-CCHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHS-
T ss_pred CCCHHHHHHHHHHHHcCCCCCCCC-----------C-HHHHHHHHHHHHHHhCCCCCHHHEEEeCChHHHHHHHHHHhc-
Confidence 6789999999998875 2222211 1 345566666655 677899999999999999999987
Q ss_pred ccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccCCceEEEEecccCccccccc---HHH
Q psy15216 81 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILE 157 (2602)
Q Consensus 81 ~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~---l~~ 157 (2602)
++||+|+++.+.|+++...+... |++++.++.+++ +|+++|+++++++++++++++|+||||.++| +++
T Consensus 103 ---~~gd~vl~~~~~~~~~~~~~~~~---g~~~~~~~~~~~--~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~~ 174 (377)
T 3fdb_A 103 ---PAQSKVIVPTPAYPPFFHLLSAT---QREGIFIDATGG--INLHDVEKGFQAGARSILLCNPYNPLGMVFAPEWLNE 174 (377)
T ss_dssp ---CTTCCEEEEESCCTHHHHHHHHH---TCCEEEEECTTS--CCHHHHHHHHHTTCCEEEEESSBTTTTBCCCHHHHHH
T ss_pred ---CCCCEEEEcCCCcHhHHHHHHHc---CCEEEEccCCCC--CCHHHHHHHhccCCCEEEEeCCCCCCCCCCCHHHHHH
Confidence 89999999999999988777666 999999998776 9999999999999999999999999999997 556
Q ss_pred HHHHHHhcCCEEEEeccccccc-----ccccCCC---CCccEEEeccccccCCCC--cEEEEE-ecCCCCcccceecCCC
Q psy15216 158 IGELCRSKGVIFHCDAAQAVGK-----IDINIQN---YKVDLMSFSAHKIYGPKG--IGALYI-RRNPRTRIEAQIHGGG 226 (2602)
Q Consensus 158 I~~la~~~g~~livD~a~a~g~-----~~~dl~~---~~~D~~~~S~~K~~Gp~G--~G~l~~-~~~~~~~l~~~~~g~~ 226 (2602)
|+++|++||+++|+|++|+... .+.++.. .+.++++.|+||.+|++| +||+++ ++++++.+....
T Consensus 175 l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~---- 250 (377)
T 3fdb_A 175 LCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTAASVCITITAPSKAWNIAGLKCAQIIFSNPSDAEHWQQLS---- 250 (377)
T ss_dssp HHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHHHHHHEEEEECSTTTTTCGGGCCEEEECCSHHHHHHHHHSC----
T ss_pred HHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHccCCCcEEEEEeChHhccCcchhheEEEeCCHHHHHHHHHHH----
Confidence 7777999999999999997632 2223322 234588999999888777 798877 555555554322
Q ss_pred ccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEccc-ChhH
Q psy15216 227 HEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI-EGES 305 (2602)
Q Consensus 227 ~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~-~~~~ 305 (2602)
....++++.++..++.++++....++++..+++.++++++.+.|.+.+|++.+..+... ...++.++.. ...+
T Consensus 251 ---~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 324 (377)
T 3fdb_A 251 ---PVIKDGASTLGLIAAEAAYRYGTDFLNQEVAYLKNNHDFLLHEIPKRIPGAKITPMQAT---YLMWIDFRDTTIEGS 324 (377)
T ss_dssp ---HHHHCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCEECCCSBC---SEEEEECTTSCCCSC
T ss_pred ---HhhcCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCCee---EEEEEECcccCCCHH
Confidence 11235677777777777887545667888999999999999999875678888755432 2334555542 2244
Q ss_pred HHHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 306 LLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 306 ~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
+...+ +||.+++|..|... ..+++||+++ ++++++++++++|++.
T Consensus 325 ~~~~l~~~~gi~v~~g~~~~~~-----------------~~~~~Ris~~--~~~e~i~~~l~~l~~~ 372 (377)
T 3fdb_A 325 PSEFFIEKAKVAMNDGAWFGED-----------------GTGFCRLNFA--TSREVLEEAIDRMAKA 372 (377)
T ss_dssp HHHHHHHHHCEECEEGGGGCGG-----------------GTTEEEEECC--SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCEEecCChhccCC-----------------CCCEEEEEeC--CCHHHHHHHHHHHHHH
Confidence 55444 49999999887642 1389999998 4899999999999863
|
| >2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-22 Score=267.56 Aligned_cols=317 Identities=14% Similarity=0.149 Sum_probs=242.3
Q ss_pred CCCHHHHHHHHHHHhhh-cCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCC
Q psy15216 8 PIDPRVVDKMIPYLRVQ-FGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRG 86 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~-~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~g 86 (2602)
.+++.+.+++.+.+... .+++. +.......+...++++++++++|++ +.++++|+++|+..++.++. ++|
T Consensus 78 ~~~~~v~~a~~~~~~~~~~~~~~---~~~~~G~~~~~~~l~~~la~~~g~~--~~i~~~sGs~a~~~al~~l~----~~g 148 (427)
T 2w8t_A 78 TFDPDVIAAGKEALEKFGSGTCG---SRMLNGTFHDHMEVEQALRDFYGTT--GAIVFSTGYMANLGIISTLA----GKG 148 (427)
T ss_dssp GGCHHHHHHHHHHHHHHCSCCCS---CTTTTCCCHHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHHS----CTT
T ss_pred CCCHHHHHHHHHHHHHhCCCCcc---cccccCCcHHHHHHHHHHHHHhCCC--ceEEecCcHHHHHHHHHHhc----CCC
Confidence 36789999999988762 12221 1222222356789999999999975 56677777889999988876 899
Q ss_pred CEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccC----CceEEEEecccCcccccccHHHHHHHH
Q psy15216 87 KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS----DTILVSVMLVNNEIGVIQPILEIGELC 162 (2602)
Q Consensus 87 d~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~----~tklv~i~~~~npTG~~~~l~~I~~la 162 (2602)
|.|+++.+.|+++...+... |++++.++. +|+++|++++++ ++++|++++++||||.+.|+++|.++|
T Consensus 149 d~vl~~~~~h~~~~~~~~~~---g~~~~~~~~-----~d~~~le~~l~~~~~~~~~~v~~~~~~n~tG~~~~l~~l~~l~ 220 (427)
T 2w8t_A 149 EYVILDADSHASIYDGCQQG---NAEIVRFRH-----NSVEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVA 220 (427)
T ss_dssp CEEEEETTCCHHHHHHHHHS---CSEEEEECT-----TCHHHHHHHHHTSCSSSCEEEEEESEETTTTEECCHHHHHHHH
T ss_pred CEEEECCcccHHHHHHHHHc---CCeeEEeCC-----CCHHHHHHHHHhccCCCCeEEEEcCCCCCCCCccCHHHHHHHH
Confidence 99999999999988777654 899988873 589999999976 789999999999999999999999999
Q ss_pred HhcCCEEEEeccccccccc---------ccCCCCCccEEEeccccccCCCCcEEEEEecCCCCcccceecCCCccccccc
Q psy15216 163 RSKGVIFHCDAAQAVGKID---------INIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRS 233 (2602)
Q Consensus 163 ~~~g~~livD~a~a~g~~~---------~dl~~~~~D~~~~S~~K~~Gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~ 233 (2602)
++||+++|+|++|+.+... +++. .++|++++|+||++|++| ||+++++++++.+.+.... ....
T Consensus 221 ~~~g~~li~Dea~~~~~~~~~g~~~~~~~~~~-~~~di~~~s~sK~~g~~g-G~v~~~~~l~~~l~~~~~~-----~~~~ 293 (427)
T 2w8t_A 221 KKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLE-GQIDFVVGTFSKSVGTVG-GFVVSNHPKFEAVRLACRP-----YIFT 293 (427)
T ss_dssp HHTTCEEEEECTTTTTTSSTTSCCHHHHTTCT-TCCSEEEEESSSTTCSCC-EEEEECCTTGGGGGGTCHH-----HHSS
T ss_pred HHcCCEEEEECCccccccCCCCCchHhhcCCC-cCCcEEEecchhhhccCC-CEEEeCHHHHHHHHHhccc-----cccc
Confidence 9999999999999876543 3332 357999999999889988 9999999888877643210 0123
Q ss_pred cCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc-cChhHHHHHh--
Q psy15216 234 GTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGESLLMAI-- 310 (2602)
Q Consensus 234 gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~L-- 310 (2602)
++++..+++++.++++... ..++.++++.++++++.+.|.+ . ++.+..++ .. ..++.+.++. .+..++...|
T Consensus 294 ~~~~~~~~aa~~~al~~~~-~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~-~~-~~~~~~~~~~~~~~~~l~~~L~~ 368 (427)
T 2w8t_A 294 ASLPPSVVATATTSIRKLM-TAHEKRERLWSNARALHGGLKA-M-GFRLGTET-CD-SAIVAVMLEDQEQAAMMWQALLD 368 (427)
T ss_dssp CCCCHHHHHHHHHHHHHHT-SCHHHHHHHHHHHHHHHHHHHH-H-TCEESCSS-CC-SSEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHH-c-CCcccCCC-CC-CCEEEEEECCHHHHHHHHHHHHH
Confidence 5677777777778887643 3578889999999999999988 3 77776333 11 2344455543 2345666666
Q ss_pred CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 311 KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 311 ~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
+||.++++..+..+ ...+++|++++.+++++|+++++++|++.
T Consensus 369 ~Gi~v~~~~~~~~~----------------~~~~~lRi~~~~~~t~e~i~~~~~~l~~~ 411 (427)
T 2w8t_A 369 GGLYVNMARPPATP----------------AGTFLLRCSICAEHTPAQIQTVLGMFQAA 411 (427)
T ss_dssp TTEECEEECTTTSC----------------TTCEEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred CCeEEeeeCCCCCC----------------CCCeEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 79999987655322 11368999999999999999999999964
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=5.1e-23 Score=265.66 Aligned_cols=306 Identities=14% Similarity=0.096 Sum_probs=234.2
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCC
Q psy15216 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK 87 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd 87 (2602)
++++.+.+++.+.+.....++.. ...++|+++++++|+++++|++|+|+++++++++.++ +||
T Consensus 37 ~~~~~v~~a~~~~~~~~~~y~~~-----------~~~~l~~~la~~~~~~~~~v~~~~g~~~al~~~~~~~------~gd 99 (364)
T 1lc5_A 37 GMPVSVKRALIDNLDCIERYPDA-----------DYFHLHQALARHHQVPASWILAGNGETESIFTVASGL------KPR 99 (364)
T ss_dssp CCCHHHHHHHHHTGGGGGSCCCT-----------TCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHH------CCS
T ss_pred CCCHHHHHHHHHHHHHhhcCCCC-----------CHHHHHHHHHHHHCcCHHHEEECCCHHHHHHHHHHHc------CCC
Confidence 46789999998887653333321 2467899999999998889999999999999999876 469
Q ss_pred EEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccC-hHHHHhhccCCceEEEEecccCccccccc---HHHHHHHHH
Q psy15216 88 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLIT-LSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIGELCR 163 (2602)
Q Consensus 88 ~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld-~e~l~~~i~~~tklv~i~~~~npTG~~~~---l~~I~~la~ 163 (2602)
+|+++.+.|+++...+... |++++.++.++...++ ++++.+.++++++++++++|+||||.++| +++|.++|+
T Consensus 100 ~vl~~~p~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~l~~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~ 176 (364)
T 1lc5_A 100 RAMIVTPGFAEYGRALAQS---GCEIRRWSLREADGWQLTDAILEALTPDLDCLFLCTPNNPTGLLPERPLLQAIADRCK 176 (364)
T ss_dssp EEEEEESCCTHHHHHHHHT---TCEEEEEECCGGGTTCCCTTHHHHCCTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHH
T ss_pred eEEEeCCCcHHHHHHHHHc---CCeEEEEeCCcccccchhHHHHHhccCCCCEEEEeCCCCCCCCCCCHHHHHHHHHHhh
Confidence 9999999999987766554 9999999987522233 57677777788999999999999999999 889999999
Q ss_pred hcCCEEEEecccccccc----cccC-CCCCccEEEeccccccCCCC--cEEEE-EecCCCCcccceecCCCccccccccC
Q psy15216 164 SKGVIFHCDAAQAVGKI----DINI-QNYKVDLMSFSAHKIYGPKG--IGALY-IRRNPRTRIEAQIHGGGHEYGLRSGT 235 (2602)
Q Consensus 164 ~~g~~livD~a~a~g~~----~~dl-~~~~~D~~~~S~~K~~Gp~G--~G~l~-~~~~~~~~l~~~~~g~~~~~~~~~gt 235 (2602)
+||+++|+|++|+.+.. .++. ...+.++++.|+||.+|++| +||++ .++++++.+.+.. ..++
T Consensus 177 ~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~---------~~~~ 247 (364)
T 1lc5_A 177 SLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSDDAAMARMRRQQ---------MPWS 247 (364)
T ss_dssp HHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTTTCTTTCCEEEECCCHHHHHHHHHHS---------CTTC
T ss_pred hcCcEEEEECcChhhccCccchhhHhccCCCEEEEEECchhhcCCccceEEEEECCHHHHHHHHHhC---------CCCC
Confidence 99999999999975432 1232 33567899999999988777 69999 8887776665433 1345
Q ss_pred cchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcccChhHHHHHh--CCe
Q psy15216 236 LATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDI 313 (2602)
Q Consensus 236 ~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI 313 (2602)
++.....++.++++. ..++++..+++.++++++.+.|.+ +|++.+..+. ..++.+.++. +..++...| +||
T Consensus 248 ~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~----g~~~~~~~~~-~~~~l~~~l~~~gi 320 (364)
T 1lc5_A 248 VNALAALAGEVALQD-SAWQQATWHWLREEGARFYQALCQ-LPLLTVYPGR----ANYLLLRCER-EDIDLQRRLLTQRI 320 (364)
T ss_dssp SCHHHHHHHHHGGGC-HHHHHHHHHHHHHHHHHHHHHHHT-STTEEECCCS----SSEEEEEESC-TTCCHHHHHHTTTE
T ss_pred CCHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHhc-CCCCEECCCC----CeEEEEECCC-cHHHHHHHHHHCCc
Confidence 677777777677764 346788888899999999999987 6788876322 2233444443 244566666 799
Q ss_pred EEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 314 AVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 314 ~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
.+++|..|... ..+++||+++ +.+|+++++++|++.
T Consensus 321 ~v~~g~~~~~~-----------------~~~~iRis~~---~~~~~~~l~~~l~~~ 356 (364)
T 1lc5_A 321 LIRSCANYPGL-----------------DSRYYRVAIR---SAAQNERLLAALRNV 356 (364)
T ss_dssp ECEECTTSTTC-----------------CTTEEEEECC---CHHHHHHHHHHHHHH
T ss_pred EEeeCcccCCC-----------------CCCEEEEEeC---CHHHHHHHHHHHHHH
Confidence 99998776421 1379999986 789999999999863
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=9.8e-24 Score=276.64 Aligned_cols=314 Identities=13% Similarity=0.126 Sum_probs=234.5
Q ss_pred CCCHHHHHHHHHHHhhhc-CCCCCCCcchhhhHHHHHHHHHHHHHHHh------CCCCCcEEEeCCHHHHHHHHHHhccc
Q psy15216 8 PIDPRVVDKMIPYLRVQF-GNPASRNHIYGWTAEKAIEKARNEVAQLI------YADPREIIWTSGATESNNLAIKGAAH 80 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~-~~p~~~~~~~~~~~~~~~~~~r~~lA~~~------g~~~~~Iv~t~g~T~al~~~~~~l~~ 80 (2602)
+.|+.+.+++.+.+.... .++.. ....++|+.+++++ ++++++|++|+|+++|+.+++.++.
T Consensus 54 ~~~~~v~~a~~~~~~~~~~~y~~~----------~g~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~- 122 (406)
T 1xi9_A 54 QPPEHMKEAYCKAIKEGHNYYGDS----------EGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEALQLIFGALL- 122 (406)
T ss_dssp CCCHHHHHHHHHHHHTTCCSCCCT----------TCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHhcCCCCCCCC----------CCcHHHHHHHHHHHHHhcCCCCCHHHEEEcCChHHHHHHHHHHhC-
Confidence 567899999988886422 12111 11345566666665 4567899999999999999999986
Q ss_pred ccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCC--CCccChHHHHhhccCCceEEEEecccCccccccc---H
Q psy15216 81 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---I 155 (2602)
Q Consensus 81 ~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~---l 155 (2602)
++||+|+++.++|+++...+.. .|++++.++.++ ++.+|+++|++++++++++|++++|+||||.++| +
T Consensus 123 ---~~gd~Vl~~~~~~~~~~~~~~~---~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l 196 (406)
T 1xi9_A 123 ---DPGDEILVPGPSYPPYTGLVKF---YGGKPVEYRTIEEEDWQPDIDDIRKKITDRTKAIAVINPNNPTGALYDKKTL 196 (406)
T ss_dssp ---CTTCEEEEEESCCHHHHHHHHH---TTCEEEEEEEEGGGTSEECHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHH
T ss_pred ---CCCCEEEEcCCCCccHHHHHHH---cCCEEEEeecCCCcCCcCCHHHHHHhhCcCceEEEEECCCCCCCCCcCHHHH
Confidence 7999999999999997766654 499999998864 4568999999999999999999999999999987 8
Q ss_pred HHHHHHHHhcCCEEEEecccccccc---cccCCC--CCc-cEEEeccccccCCCC--cEEEE--Eec----CCCCcccce
Q psy15216 156 LEIGELCRSKGVIFHCDAAQAVGKI---DINIQN--YKV-DLMSFSAHKIYGPKG--IGALY--IRR----NPRTRIEAQ 221 (2602)
Q Consensus 156 ~~I~~la~~~g~~livD~a~a~g~~---~~dl~~--~~~-D~~~~S~~K~~Gp~G--~G~l~--~~~----~~~~~l~~~ 221 (2602)
++|.++|++||+++|+|++|+.+.. +..+.. .+. +++++|+||++|++| +||++ .++ ++++.+...
T Consensus 197 ~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~l~~~l~~~ 276 (406)
T 1xi9_A 197 EEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVYFATGWRLGYMYFVDPENKLSEVREAIDRL 276 (406)
T ss_dssp HHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSSSCEEEEEESTTTTCCGGGCCEEEEEECTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHcCCCceEEEEeccccccCCCccEEEEEEEecCchhHHHHHHHHHHH
Confidence 8999999999999999999976432 112211 345 789999999988888 89999 776 555555432
Q ss_pred ecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEc--
Q psy15216 222 IHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN-- 299 (2602)
Q Consensus 222 ~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~-- 299 (2602)
.. .. ++++.....++.++|+....++++..+++.++++++.+.|.+ +|++.+..+.. +...++.++
T Consensus 277 ~~-------~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~---~~~~~~~~~~~ 344 (406)
T 1xi9_A 277 AR-------IR-LCPNTPAQFAAIAGLTGPMDYLKEYMKKLKERRDYIYKRLNE-IPGISTTKPQG---AFYIFPKIEVG 344 (406)
T ss_dssp HH-------HT-CCSCSHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHT-STTEECCCCCB---SSEECCEECSC
T ss_pred HH-------hh-cCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHh-CCCCeeecCCe---eEEEEEecCcc
Confidence 21 11 456667777777777522334678888999999999999987 67887764432 222333454
Q ss_pred -ccChhHHHHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 300 -FIEGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 300 -~~~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
..+..++...| +||.+++|..|... ..+++||+++ ++++++++++++|++.
T Consensus 345 ~~~~~~~l~~~l~~~~gi~v~~g~~f~~~-----------------~~~~lRis~~--~~~~~i~~~~~~l~~~ 399 (406)
T 1xi9_A 345 PWKNDKEFVLDVLHNAHVLFVHGSGFGEY-----------------GAGHFRAVFL--PPIEILEEAMDRFEKF 399 (406)
T ss_dssp SCSSHHHHHHHHHHHHCEECEEGGGGCGG-----------------GTTBEEEECC--SCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCEEEeCchhcCCC-----------------CCCEEEEEec--CCHHHHHHHHHHHHHH
Confidence 24566666655 59999988766421 1378999998 7999999999999864
|
| >3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=8.7e-23 Score=274.82 Aligned_cols=331 Identities=16% Similarity=0.123 Sum_probs=249.1
Q ss_pred CCCHHHHHHHHHHHhhhcC-CCCCCCcchhhhHHHHHHHHHHHHHHHhCCC--CCcEEEeCCHHHHHHHHHHhcccccc-
Q psy15216 8 PIDPRVVDKMIPYLRVQFG-NPASRNHIYGWTAEKAIEKARNEVAQLIYAD--PREIIWTSGATESNNLAIKGAAHFYK- 83 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~~-~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~--~~~Iv~t~g~T~al~~~~~~l~~~~~- 83 (2602)
+.++.+.+++.+.+..... ++.. +........+.+++++++++++|++ ++++++++|+|+|+.+++.++.....
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~ 152 (497)
T 3mc6_A 75 HGGDDLIHLQTIAYEKYCVANQLH--PDVFPAVRKMESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYALH 152 (497)
T ss_dssp CCCHHHHHHHHHHHHHTSSCBTTC--TTTCHHHHHHHHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHhhcCCCC--cccChHHHHHHHHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHHHHHHh
Confidence 4457788888887765322 2221 2223345567788999999999997 67899999999999999999862100
Q ss_pred cCC---CEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCC-CCccChHHHHhhccCCceEEEEecccCcccccccHHHHH
Q psy15216 84 KRG---KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIG 159 (2602)
Q Consensus 84 ~~g---d~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~-~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~ 159 (2602)
.+| |+|+++.+.|+++...+... |++++.+++++ ++.+|+++|+++++++|++|++++|+||||.+.|+++|.
T Consensus 153 ~~g~~~~~Vi~~~~~h~~~~~~~~~~---G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~p~nptG~~~~l~~i~ 229 (497)
T 3mc6_A 153 HRGITEPEIIAPVTAHAGFDKAAYYF---GMKLRHVELDPTTYQVDLGKVKKFINKNTVLLVGSAPNFPHGIADDIEGLG 229 (497)
T ss_dssp HSCCSSCEEEEETTSCHHHHHHHHHS---CCEEEEECBCTTTCSBCTTTTGGGCCSSEEEEEEETTCTTTCCCCSCTTTT
T ss_pred cCCCCCceEEEeCCccHHHHHHHHHc---CCeEEEEecCcccCcCCHHHHHHHHhhCCEEEEEECCCCCCCcCCCHHHHH
Confidence 145 89999999999988777765 99999999987 788999999999999999999999999999999999999
Q ss_pred HHHHhcCCEEEEecccccccc------------cccCCCCCccEEEeccccc-cCCCCcEEEEEecCCCCcc----ccee
Q psy15216 160 ELCRSKGVIFHCDAAQAVGKI------------DINIQNYKVDLMSFSAHKI-YGPKGIGALYIRRNPRTRI----EAQI 222 (2602)
Q Consensus 160 ~la~~~g~~livD~a~a~g~~------------~~dl~~~~~D~~~~S~~K~-~Gp~G~G~l~~~~~~~~~l----~~~~ 222 (2602)
++|++||+++|+|++|+.+.. +++....++|++++|+||+ +||.|+|+++++++..... .+.+
T Consensus 230 ~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~~~~~~~~~~~~~~~ 309 (497)
T 3mc6_A 230 KIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGVTSISCDTHKYGFAPKGSSVIMYRNSDLRMHQYYVNPAW 309 (497)
T ss_dssp THHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCSTTSTTCCEEEEETTTTTCCCSSCEEEECSSHHHHTTTSCCBTTC
T ss_pred HHHHHhCCEEEEECcchhhhhhhhhhhcccCCccccccCCCCcEEEECchhhcCCCCCceeEEecCHHHHhhhhcccccc
Confidence 999999999999999974332 3555667899999999995 6888999999987543322 1222
Q ss_pred cCCCccccccccCcchhHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEccc
Q psy15216 223 HGGGHEYGLRSGTLATHQIVGMGEAFRL-ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI 301 (2602)
Q Consensus 223 ~g~~~~~~~~~gt~~~~~~~al~~al~~-~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~ 301 (2602)
.++........|+.+...++++.++++. ...++++..++..++++++++.|.+.+++++++.++. ...+.+..+..
T Consensus 310 ~~~~~~~~~~~g~~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~g~~~~~~~~---~~~v~~~~~~~ 386 (497)
T 3mc6_A 310 TGGLYGSPTLAGSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQENIPDLDIMGNPR---YSVISFSSKTL 386 (497)
T ss_dssp TTSCBCCSSSCSSCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCEECSCCC---SSEEEEECTTT
T ss_pred cCCCcCCcCcccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCC---eeEEEEeCCCC
Confidence 1211111122345555667777788874 3456788999999999999999987458998876532 23344444445
Q ss_pred ChhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 302 EGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 302 ~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
+..++.+.| +||.++.+.. ...+|+++. .++.+++++++++|++.
T Consensus 387 ~~~~l~~~L~~~Gi~v~~~~~----------------------~~~~ri~~~-~~t~e~i~~~~~~L~~~ 433 (497)
T 3mc6_A 387 NIHELSDRLSKKGWHFNALQK----------------------PVALHMAFT-RLSAHVVDEICDILRTT 433 (497)
T ss_dssp THHHHHHHHHTTTCBCEECCS----------------------SCCEEEECC-TTTTCTHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCEEEecCCC----------------------CCeEEEEEe-CCCHHHHHHHHHHHHHH
Confidence 677777777 6887764321 145899988 67999999999999964
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-23 Score=273.85 Aligned_cols=308 Identities=15% Similarity=0.137 Sum_probs=230.2
Q ss_pred CCCHHHHHHHHHHHhhhc-CCCCCCCcchhhhHHHHHHHHHHHHHHHh----CC--CCCcEEEeCCHHHHHHHHHHhccc
Q psy15216 8 PIDPRVVDKMIPYLRVQF-GNPASRNHIYGWTAEKAIEKARNEVAQLI----YA--DPREIIWTSGATESNNLAIKGAAH 80 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~-~~p~~~~~~~~~~~~~~~~~~r~~lA~~~----g~--~~~~Iv~t~g~T~al~~~~~~l~~ 80 (2602)
+.|+.+.+++.+.+.... .++. . ....++|+.+++++ |+ ++++|++|+|+|+|+++++.++.
T Consensus 54 ~~~~~v~~a~~~~~~~~~~~y~~------~----~g~~~lr~~la~~~~~~~g~~~~~~~v~~~~g~t~al~~~~~~l~- 122 (389)
T 1o4s_A 54 PTPEPVVEEAVRFLQKGEVKYTD------P----RGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMALL- 122 (389)
T ss_dssp CCCHHHHHHHHHHHTTCCCCCCC------T----TCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHhcCCCCCCC------C----CCCHHHHHHHHHHHHHHhCCCCCHHHEEEecCHHHHHHHHHHHhC-
Confidence 467889999988885421 1111 1 11345566666665 75 67899999999999999999987
Q ss_pred ccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCC--CCccChHHHHhhccCCceEEEEecccCccccccc---H
Q psy15216 81 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---I 155 (2602)
Q Consensus 81 ~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~---l 155 (2602)
++||+|++++++|+++...+... |++++.++.++ ++.+|+++|++++++++++|++++|+||||.++| +
T Consensus 123 ---~~gd~Vl~~~~~~~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l 196 (389)
T 1o4s_A 123 ---DPGDEVIVFSPVWVSYIPQIILA---GGTVNVVETFMSKNFQPSLEEVEGLLVGKTKAVLINSPNNPTGVVYRREFL 196 (389)
T ss_dssp ---CTTCEEEEEESCCTTHHHHHHHT---TCEEEEEECCGGGTTCCCHHHHHHTCCTTEEEEEEESSCTTTCCCCCHHHH
T ss_pred ---CCCCEEEEcCCCchhHHHHHHHc---CCEEEEEecCCccCCCCCHHHHHHhcccCceEEEEcCCCCCCCCCCCHHHH
Confidence 79999999999999987766544 99999999875 4678999999999999999999999999999988 8
Q ss_pred HHHHHHHHhcCCEEEEecccccccc---ccc---CCC-CCccEEEeccccccCCCC--cEEEEEecCCCCcccceecCCC
Q psy15216 156 LEIGELCRSKGVIFHCDAAQAVGKI---DIN---IQN-YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGG 226 (2602)
Q Consensus 156 ~~I~~la~~~g~~livD~a~a~g~~---~~d---l~~-~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g~~ 226 (2602)
++|+++|++||+++|+|++|+.+.. +.+ +.. .+.|++++|+||++|++| +||+++++++++.+.+...+
T Consensus 197 ~~l~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~l~~~~~~~~~l~~~~~~-- 274 (389)
T 1o4s_A 197 EGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRVGYLISSEKVATAVSKIQSH-- 274 (389)
T ss_dssp HHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGGGCCEEEECCHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHcCCEEEEEccccccccCCCCCCHhhcCCCCCcEEEEeechhhcCCcccceEEEEeCHHHHHHHHHHhhh--
Confidence 8999999999999999999986543 112 221 357899999999989888 89999988776666543311
Q ss_pred ccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcccChhHH
Q psy15216 227 HEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESL 306 (2602)
Q Consensus 227 ~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 306 (2602)
...+++.....++.++|+ .+.++..+++.++++++.+.|.+ . ++.+..+.. +...++.++ .+..++
T Consensus 275 -----~~~~~~~~~~~a~~~~l~---~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~---~~~~~~~~~-~~~~~l 340 (389)
T 1o4s_A 275 -----TTSCINTVAQYAALKALE---VDNSYMVQTFKERKNFVVERLKK-M-GVKFVEPEG---AFYLFFKVR-GDDVKF 340 (389)
T ss_dssp -----HTCSCCHHHHHHHHHHTT---CCCHHHHHHHHHHHHHHHHHHHH-T-TCCCCCCSB---SSEEEEECS-SCHHHH
T ss_pred -----cccCCCHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHh-c-CCeeecCCc---ceEEEEeCC-CCHHHH
Confidence 112344444444444554 23678888899999999999987 4 666554322 233334444 456667
Q ss_pred HHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 307 LMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 307 ~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
...| +||.+++|..|..+ +++||+++ ++++++++++++|++.
T Consensus 341 ~~~l~~~~gi~v~~g~~f~~~-------------------~~~Ris~~--~~~~~l~~~l~~l~~~ 385 (389)
T 1o4s_A 341 CERLLEEKKVALVPGSAFLKP-------------------GFVRLSFA--TSIERLTEALDRIEDF 385 (389)
T ss_dssp HHHHHHHHCEECEEGGGGTCT-------------------TEEEEECC--SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCEEEeCchhcCCC-------------------CeEEEEEe--CCHHHHHHHHHHHHHH
Confidence 6665 59999988766432 68999998 3899999999999853
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=3.7e-23 Score=272.28 Aligned_cols=318 Identities=14% Similarity=0.092 Sum_probs=239.4
Q ss_pred CCCCCHHHHHHHHHHHhhhc--CCCCCCCcchhhhHHHHHHHHHHHHHHHhC------------CCCCcEEEeCCHHHHH
Q psy15216 6 TTPIDPRVVDKMIPYLRVQF--GNPASRNHIYGWTAEKAIEKARNEVAQLIY------------ADPREIIWTSGATESN 71 (2602)
Q Consensus 6 ~~~~p~~v~~a~~~~l~~~~--~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g------------~~~~~Iv~t~g~T~al 71 (2602)
..++++.+.+++.+.+.... .++. .....++|++++++++ +++++|++|+|+++|+
T Consensus 48 ~~~~~~~v~~a~~~~~~~~~~~~y~~----------~~~~~~lr~~la~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~al 117 (416)
T 1bw0_A 48 NLLTSAAQIKKLKEAIDSQECNGYFP----------TVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGI 117 (416)
T ss_dssp CSCCCHHHHHHHHHHHHTTCSSSCCC----------TTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEESHHHHHH
T ss_pred CCCCCHHHHHHHHHHhhCCccCCcCC----------CCCCHHHHHHHHHHHHhhhcccccCCCCCCcceEEEeCChHHHH
Confidence 35788999999999886421 1111 1124667888888887 6778999999999999
Q ss_pred HHHHHhcccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCC--CCccChHHHHhhccCCceEEEEecccCcc
Q psy15216 72 NLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEI 149 (2602)
Q Consensus 72 ~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~ld~e~l~~~i~~~tklv~i~~~~npT 149 (2602)
++++.++. ++||+|+++.++|+++...+.. .|++++.++.++ ++.+|+++|+++++++++++++++|+|||
T Consensus 118 ~~~~~~l~----~~gd~vl~~~p~y~~~~~~~~~---~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~npt 190 (416)
T 1bw0_A 118 LMAITAIC----DAGDYALVPQPGFPHYETVCKA---YGIGMHFYNCRPENDWEADLDEIRRLKDDKTKLLIVTNPSNPC 190 (416)
T ss_dssp HHHHHHHC----CTTCEEEEEESCCTHHHHHHHH---TTCEEEEEEEEGGGTTEECHHHHHHHCCTTEEEEEEESSCTTT
T ss_pred HHHHHHhC----CCCCEEEEcCCCcHhHHHHHHH---cCcEEEEeecCcccCCCCCHHHHHHHhccCCeEEEEeCCCCCC
Confidence 99999987 7999999999999998766554 499999998764 35689999999999999999999999999
Q ss_pred ccccc---HHHHHHHHHhcCCEEEEecccccc----c----ccccCCCC---CccEEEeccccccCCCC--cEEEEEecC
Q psy15216 150 GVIQP---ILEIGELCRSKGVIFHCDAAQAVG----K----IDINIQNY---KVDLMSFSAHKIYGPKG--IGALYIRRN 213 (2602)
Q Consensus 150 G~~~~---l~~I~~la~~~g~~livD~a~a~g----~----~~~dl~~~---~~D~~~~S~~K~~Gp~G--~G~l~~~~~ 213 (2602)
|.++| +++|.++|++||+++|+|++|+.. . ....+..+ +.++++.|+||.++++| +||++++++
T Consensus 191 G~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~Glr~G~~~~~~~ 270 (416)
T 1bw0_A 191 GSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNLVVPGWRLGWLLYVDP 270 (416)
T ss_dssp CCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTTSCGGGCCEEEEEECT
T ss_pred CcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHHccCCCcEEEEecchhhCCCCCceEEEEEeeCc
Confidence 99999 889999999999999999999752 1 11223222 23577889999888777 799999874
Q ss_pred --CCCcccceecCCCccccccccCcchhHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCC
Q psy15216 214 --PRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRL-ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRI 290 (2602)
Q Consensus 214 --~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~-~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~ 290 (2602)
+++.+.+.... .....++++....+++.++|+. ...++++..++++++++++.+.|.+ +|++.+..+..
T Consensus 271 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~--- 342 (416)
T 1bw0_A 271 HGNGPSFLEGLKR----VGMLVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGE-CIGLAPTMPRG--- 342 (416)
T ss_dssp TCSCHHHHHHHHH----HHHHHTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHTT-STTEEECCCCB---
T ss_pred hhhHHHHHHHHHH----HhccccCCCcHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHh-CCCCcccCCCe---
Confidence 55544321100 0012346777777777777773 2456788899999999999999987 67888764432
Q ss_pred CceEEEEEcc------cChhHHHHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHH
Q psy15216 291 PHNLNISFNF------IEGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDF 361 (2602)
Q Consensus 291 ~~~~~~~~~~------~~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~ 361 (2602)
.....+.++. .+..++...| +||.+++|..|.. ++++||+++ ++++++++
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~-------------------~~~iRis~~--~~~e~l~~ 401 (416)
T 1bw0_A 343 AMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFHA-------------------PGFTRLTTT--RPVEVYRE 401 (416)
T ss_dssp TTEEEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGTC-------------------TTEEEEECC--SCHHHHHH
T ss_pred eEEEEEeCCHHHcCCCCCHHHHHHHHHHHCCEEEecccccCC-------------------CCeEEEEec--CCHHHHHH
Confidence 2334455542 3455666554 5999998877643 278999996 58999999
Q ss_pred HHHHHHhh
Q psy15216 362 TIKLLKMK 369 (2602)
Q Consensus 362 li~~L~~~ 369 (2602)
++++|++.
T Consensus 402 ~l~~l~~~ 409 (416)
T 1bw0_A 402 AVERIKAF 409 (416)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999863
|
| >1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=8.9e-23 Score=269.76 Aligned_cols=298 Identities=14% Similarity=0.122 Sum_probs=225.5
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHHHH-HhCCcEEE
Q psy15216 36 GWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDGFRVT 114 (2602)
Q Consensus 36 ~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~-~~~G~~v~ 114 (2602)
+....+..+++++++++++|++++++++++|+|.+++.+..++. +++||+|+++.++|+++...+..+ +..|++++
T Consensus 103 ~~g~~~~~~~~~~~la~~~g~~~~~i~~~~g~taa~ea~~~a~~---~~~gd~Viv~~~~h~s~~~~~~~~a~~~G~~v~ 179 (438)
T 1wyu_A 103 SQGVLQATFEYQTMIAELAGLEIANASMYDGATALAEGVLLALR---ETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLL 179 (438)
T ss_dssp CHHHHHHHHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHHH---HHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEE
T ss_pred hhhHHHHHHHHHHHHHHHhCCCccceEEeCcHHHHHHHHHHHHh---cCCCCEEEEcCccCHhHHHHHHHHHHHCCCEEE
Confidence 44566788999999999999988888999999966555555543 368999999999999998888654 55799999
Q ss_pred EeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHhcCCEEEEecc-cccccccccCCCCCccEEE
Q psy15216 115 YLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAA-QAVGKIDINIQNYKVDLMS 193 (2602)
Q Consensus 115 ~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~~g~~livD~a-~a~g~~~~dl~~~~~D~~~ 193 (2602)
.++. +++.+|+++ ++++|++|++++| ||||.+.|+++|+++||++|+++++|.. +++|..+.+ ..+++|+++
T Consensus 180 ~v~~-~~~~~d~~~----i~~~t~~v~i~~p-n~tG~~~~l~~i~~la~~~g~~vivd~d~~a~g~~~~~-~~~g~D~~~ 252 (438)
T 1wyu_A 180 TLPL-EGGRTPLPE----VGEEVGAVVVQNP-NFLGALEDLGPFAEAAHGAGALFVAVADPLSLGVLKPP-GAYGADIAV 252 (438)
T ss_dssp EECC-BTTBCCCCC----CCTTEEEEEEESS-CTTSBCCCHHHHHHHHHHTTCEEEEECCTTGGGTBCCH-HHHTCSEEE
T ss_pred EEcC-cCCccCHHH----hCCCeEEEEEECC-CCCeEEecHHHHHHHHHHcCCEEEEEechhhccCcCCC-ccCCCCEEE
Confidence 9987 557788876 7889999999999 9999999999999999999999998865 666654433 346789999
Q ss_pred ecccc------ccCCCCcEEEEEecCCCCcccceecCCCc-----------------cccccccCcch---hHHHHHHHH
Q psy15216 194 FSAHK------IYGPKGIGALYIRRNPRTRIEAQIHGGGH-----------------EYGLRSGTLAT---HQIVGMGEA 247 (2602)
Q Consensus 194 ~S~~K------~~Gp~G~G~l~~~~~~~~~l~~~~~g~~~-----------------~~~~~~gt~~~---~~~~al~~a 247 (2602)
+|.|| ++|| |+|++++++++.+.+.+...|+.. ..++..+++++ ..+.++.++
T Consensus 253 ~s~kk~~~~~~~~Gp-~~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~r~~~~t~~~~~~~~~~a~~aa 331 (438)
T 1wyu_A 253 GDGQSLGLPMGFGGP-HFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGA 331 (438)
T ss_dssp EECTTTTCCCGGGCS-CCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHH
T ss_pred ECCcccCCCccCCCC-CeeEEEEcHHHHHhCCCceeccccccCCCcceeeeccccccccchhcccCCccchHHHHHHHHH
Confidence 99776 2356 899999999887776544322110 01234567766 455555555
Q ss_pred --HHH-HHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcccChhHHHHHh--CCeEE--ccccc
Q psy15216 248 --FRL-ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDIAV--SSGSA 320 (2602)
Q Consensus 248 --l~~-~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~v--~~g~~ 320 (2602)
+.+ ...+++++.++..++++++.+.|.+ ++|++++.+. . ....+.+.++ .+..++.+.| +||.+ +++..
T Consensus 332 ~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~-~-~~~~~~~~~~-~~~~~~~~~L~~~gi~v~~~~~~~ 407 (438)
T 1wyu_A 332 MYLAALGPEGLREVALKSVEMAHKLHALLLE-VPGVRPFTPK-P-FFNEFALALP-KDPEAVRRALAERGFHGATPVPRE 407 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-STTCEECSCS-S-BCSEEEEECS-SCHHHHHHHHHHTTCCCCEECCTT
T ss_pred HHHHHhCHHHHHHHHHHHHHHHHHHHHHHhc-CCCeEECCCC-C-eEEEEEEeCC-CCHHHHHHHHHHCCceeccccccc
Confidence 553 3356888999999999999999988 6799987642 1 1122233332 3566777777 78887 44543
Q ss_pred CCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 321 CTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 321 ~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
|. .+++|||++.++|++|+++++++|++
T Consensus 408 ~~--------------------~~~lRis~~~~~t~edi~~~~~~l~~ 435 (438)
T 1wyu_A 408 YG--------------------ENLALFAATELHEEEDLLALREALKE 435 (438)
T ss_dssp SC--------------------SSEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred cC--------------------CCeEEEEecccCCHHHHHHHHHHHHH
Confidence 32 27899999999999999999999985
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.6e-22 Score=273.01 Aligned_cols=325 Identities=19% Similarity=0.177 Sum_probs=246.1
Q ss_pred CCHHHHHHHHHHHhhhc-CCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCC--CcE--EEeCCHHHHHHHHHHhcccccc
Q psy15216 9 IDPRVVDKMIPYLRVQF-GNPASRNHIYGWTAEKAIEKARNEVAQLIYADP--REI--IWTSGATESNNLAIKGAAHFYK 83 (2602)
Q Consensus 9 ~p~~v~~a~~~~l~~~~-~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~--~~I--v~t~g~T~al~~~~~~l~~~~~ 83 (2602)
..+.+.+++.+.+.... .++.. +........+.+++++++++++|+++ +++ ++++|+|+|+.+++.++.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~p~~~~le~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~---- 181 (514)
T 3mad_A 108 GDEHHIAFLNEVYALQSQSNPLH--PDLWPSTAKFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYR---- 181 (514)
T ss_dssp CCHHHHHHHHHHHHHHTTCCTTC--TTTCHHHHHHHHHHHHHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHH----
T ss_pred CCCCHHHHHHHHHHHHhhcCCcc--cccChHHHHHHHHHHHHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHHH----
Confidence 34556666666554322 22221 22233445677788999999999864 577 999999999999999987
Q ss_pred cCC--------CEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccH
Q psy15216 84 KRG--------KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPI 155 (2602)
Q Consensus 84 ~~g--------d~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l 155 (2602)
.+| |+|+++.+.|+++...+... |++++.+++++++.+|+++|++++++++++|++++++||||.+.|+
T Consensus 182 ~~g~~~~g~~~d~Vi~~~~~~~~~~~~~~~~---G~~v~~v~~~~~~~~d~~~Le~~i~~~~~~v~~~~~~nptG~~~~l 258 (514)
T 3mad_A 182 DWARATKGITAPEAVVPVSAHAAFDKAAQYF---GIKLVRTPLDADYRADVAAMREAITPNTVVVAGSAPGYPHGVVDPI 258 (514)
T ss_dssp HHHHHHHCCSSCEEEEETTSCTHHHHHHHHH---TCEEEEECBCTTSCBCHHHHHHHCCTTEEEEEEETTCTTTCCCCCH
T ss_pred HHhhhhcCCCCCeEEEeCccchHHHHHHHHc---CCeeEEeeeCCCCCCCHHHHHHHhccCCEEEEEeCCCCCCccccCH
Confidence 444 89999999999988888777 9999999999899999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCEEEEecccccccc-----------cccCCCCCccEEEeccccc-cCCCCcEEEEEecCCCCccccee-
Q psy15216 156 LEIGELCRSKGVIFHCDAAQAVGKI-----------DINIQNYKVDLMSFSAHKI-YGPKGIGALYIRRNPRTRIEAQI- 222 (2602)
Q Consensus 156 ~~I~~la~~~g~~livD~a~a~g~~-----------~~dl~~~~~D~~~~S~~K~-~Gp~G~G~l~~~~~~~~~l~~~~- 222 (2602)
++|.++|++||+++|+|++|+.+.. +++....++|++++|+||+ +|+.|+|+++++++.........
T Consensus 259 ~~i~~la~~~~i~livDea~~~~~~~~~~~~g~~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~~~~~~~~~~~~ 338 (514)
T 3mad_A 259 PEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGYGAKGTSVILYRRPDLLHYQYFIA 338 (514)
T ss_dssp HHHHHHHHHHTCEEEEECTTTTTTHHHHHHTTCCCCCCSTTSTTCCEEEECTTTTTCCCSSCEEEEESSHHHHTTTCEEE
T ss_pred HHHHHHHHHhCCeEEEecccccccchhHHhcCCCCCcccccCCCCcEEEECchhccCCCCCeEEEEEeCHHHhccccccc
Confidence 9999999999999999999875432 3555666889999999995 78889999999876433322111
Q ss_pred ---cCCCccccccccCcchhHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEE
Q psy15216 223 ---HGGGHEYGLRSGTLATHQIVGMGEAFRL-ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISF 298 (2602)
Q Consensus 223 ---~g~~~~~~~~~gt~~~~~~~al~~al~~-~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~ 298 (2602)
.++........|+.+....+++.+++.. ...++++..++..++++++.+.|.+ +++++++.++. .++.+..
T Consensus 339 ~~~~~~~~~~~~~~gs~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~----~~~~~~~ 413 (514)
T 3mad_A 339 ADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRA-IPSLKILGDPL----WVIAVAS 413 (514)
T ss_dssp SSCTTCSEEESSSCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-STTCEESSCCS----SEEEEEC
T ss_pred cccCCCcccCCccCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh-CCCeEEeCCCe----EEEEEeC
Confidence 1111111223567777777778888874 3456889999999999999999988 78998886542 2333333
Q ss_pred cccChhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecC-CCCCHHHHHHHHHHHHhh
Q psy15216 299 NFIEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIG-RFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 299 ~~~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~-~~~t~edid~li~~L~~~ 369 (2602)
...+..++.+.| +||.+ ++..+ .+++|+++. ..++++++++++++|++.
T Consensus 414 ~~~~~~~l~~~L~~~Gi~v-~g~~~---------------------~~~~Ri~~~~~~~~~e~i~~~l~~L~~~ 465 (514)
T 3mad_A 414 DELNIYQVMEEMAGRGWRL-NGLHR---------------------PPAFHVALTLRHTEPGVVDRFLADLQDA 465 (514)
T ss_dssp SSSCHHHHHHHHHTTTCBC-EEETT---------------------TTEEEEECCGGGGSTTHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhcCCEe-ccCCC---------------------CCeEEEEEecCCCCHHHHHHHHHHHHHH
Confidence 445667777777 67776 33322 267999997 445669999999999964
|
| >2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=9.5e-23 Score=274.61 Aligned_cols=346 Identities=17% Similarity=0.191 Sum_probs=235.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhccc
Q psy15216 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAH 80 (2602)
Q Consensus 1 Ld~a~~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~ 80 (2602)
||+..+++.|..++.. ++.. +.|+....+..+.....+.+++++++++++|+++++++|++|+|+|+..++.++..
T Consensus 112 ~~~~~~~~~~~~~~~~---~l~~-~~n~~~~~~~~s~~~~~le~~~~~~la~l~g~~~~~~~~t~ggtea~~~al~~ar~ 187 (515)
T 2jis_A 112 FNQLFSGLDPHALAGR---IITE-SLNTSQYTYEIAPVFVLMEEEVLRKLRALVGWSSGDGIFCPGGSISNMYAVNLARY 187 (515)
T ss_dssp ESSSCCCCCHHHHHHH---HHHH-HHCCCTTCTTTCHHHHHHHHHHHHHHHHHHTCSSCEEEEESSHHHHHHHHHHHHHH
T ss_pred EEEeeCCCCHHHHHHH---HHHH-HhccCCCchhhchHHHHHHHHHHHHHHHHhCCCCCCeEEcCCcHHHHHHHHHHHHH
Confidence 3566666666665553 2322 23554434455556677888999999999999888999999999999999888742
Q ss_pred cc----ccCCC------EEEEcCCCCcccHHHHHHHHhCCc---EEEEeccCCCCccChHHHHhhccC------CceEEE
Q psy15216 81 FY----KKRGK------HIITVQTEHKSVLDSIRKLENDGF---RVTYLKPKNNGLITLSQLEEKICS------DTILVS 141 (2602)
Q Consensus 81 ~~----~~~gd------~Vlv~~~~~~s~~~~~~~~~~~G~---~v~~v~~~~~~~ld~e~l~~~i~~------~tklv~ 141 (2602)
.. ..+|+ +|+++..+|+++..++..+ |. +++.+++++++.+|+++|+++|++ +|++|+
T Consensus 188 ~~~~~~~~~G~~~~~~~~vl~s~~~h~s~~~~~~~~---g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~Vv 264 (515)
T 2jis_A 188 QRYPDCKQRGLRTLPPLALFTSKECHYSIQKGAAFL---GLGTDSVRVVKADERGKMVPEDLERQIGMAEAEGAVPFLVS 264 (515)
T ss_dssp HHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHHT---TSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHhhHHhhcCccccCCeEEEECCCccHHHHHHHHHc---CCCCCcEEEEecCCCCcCCHHHHHHHHHHHHhCCCCcEEEE
Confidence 11 12465 8999999999999888776 55 899999988899999999999975 489999
Q ss_pred EecccCcccccccHHHHHHHHHhcCCEEEEeccccccccccc-----CCCC-CccEEEecccccc-CCCCcEEEEEecC-
Q psy15216 142 VMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDIN-----IQNY-KVDLMSFSAHKIY-GPKGIGALYIRRN- 213 (2602)
Q Consensus 142 i~~~~npTG~~~~l~~I~~la~~~g~~livD~a~a~g~~~~d-----l~~~-~~D~~~~S~~K~~-Gp~G~G~l~~~~~- 213 (2602)
+++++|+||.+.|+++|+++|++||+++|+|++|+.+..+.+ +... ++|++++|+||++ +|.|+|+++++++
T Consensus 265 ~~~~~n~tG~i~~l~~I~~la~~~g~~l~vD~a~~~~~~~~~~~~~~~~g~~~aD~v~~s~hK~l~~p~g~G~l~~~~~~ 344 (515)
T 2jis_A 265 ATSGTTVLGAFDPLEAIADVCQRHGLWLHVDAAWGGSVLLSQTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALLLQDTS 344 (515)
T ss_dssp EEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESCCS
T ss_pred EeCCCCCCCCccCHHHHHHHHHHcCCeEEEehhhhhHHHhChhhHhhcCCCccCCEEEECcccccCCCCCeeEEEEeChH
Confidence 999999999999999999999999999999999998877654 4444 7899999999965 5889999999876
Q ss_pred -CCCc----ccceecCCCc--cccccccCcch-----hHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHhhccCce
Q psy15216 214 -PRTR----IEAQIHGGGH--EYGLRSGTLAT-----HQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEI 280 (2602)
Q Consensus 214 -~~~~----l~~~~~g~~~--~~~~~~gt~~~-----~~~~al~~al~-~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~ 280 (2602)
++.. ..++..++.. ...+..+++++ ....++.++++ +...++++..++..++++++.+.|.+ .+++
T Consensus 345 ~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~-~~g~ 423 (515)
T 2jis_A 345 NLLKRCHGSQASYLFQQDKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKK-REGF 423 (515)
T ss_dssp CHHHHHHCC---------CCSCGGGCCGGGCSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-STTE
T ss_pred HHHHHHhcCCchhccCCcccccccCCCCCCCCCCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc-CCCE
Confidence 4333 2233322211 00112222211 01223333444 33467889999999999999999988 7899
Q ss_pred EEeCCCCCCCCceEEEEE-cc-c----ChhHHHHH-------hCCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEE
Q psy15216 281 YINGDMNNRIPHNLNISF-NF-I----EGESLLMA-------IKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIR 347 (2602)
Q Consensus 281 ~l~~~~~~~~~~~~~~~~-~~-~----~~~~~~~~-------L~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iR 347 (2602)
+++.++.. ..+.|.+ +. . +..++... +.+.....|..|... ... . ...+++|
T Consensus 424 ~~~~~~~~---~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~G~~~~~~--------~~~--~--~~~~~lR 488 (515)
T 2jis_A 424 ELVMEPEF---VNVCFWFVPPSLRGKQESPDYHERLSKVAPVLKERMVKEGSMMIGY--------QPH--G--TRGNFFR 488 (515)
T ss_dssp EESSCCSS---SEEEEEECCGGGTTCTTSTTHHHHHHTHHHHHHHHHHHHTSCEEEE--------EEE--T--TEEEEEE
T ss_pred EEeCCCCe---eEEEEEEeCccccccccchhHHHHHHHHHHHHHHHHHhcCCEEEEE--------EEE--C--CceEEEE
Confidence 99875431 2344443 21 1 11111110 111111222222110 000 0 0126899
Q ss_pred Eec-CCCCCHHHHHHHHHHHHhh
Q psy15216 348 FTI-GRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 348 is~-~~~~t~edid~li~~L~~~ 369 (2602)
+++ ++++|++||++++++|++.
T Consensus 489 is~~~~~~t~edid~~~~~l~~~ 511 (515)
T 2jis_A 489 VVVANSALTCADMDFLLNELERL 511 (515)
T ss_dssp EECCCTTCCHHHHHHHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHHHHHHHH
Confidence 999 8999999999999999863
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.9e-23 Score=272.09 Aligned_cols=318 Identities=15% Similarity=0.170 Sum_probs=246.4
Q ss_pred CCCHHHHHHHHHHHhhh-cCCCCCCCcchhhhHHHHHHHHHHHHHHHhC--CCCCcEEEeCCHHHHHHHHHHhccccccc
Q psy15216 8 PIDPRVVDKMIPYLRVQ-FGNPASRNHIYGWTAEKAIEKARNEVAQLIY--ADPREIIWTSGATESNNLAIKGAAHFYKK 84 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~-~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g--~~~~~Iv~t~g~T~al~~~~~~l~~~~~~ 84 (2602)
++++.+.+++.+.+... +.++. ...+..+++++++++.+| +++++|++++|+++|++.++.++. +
T Consensus 74 ~~~~~v~~a~~~~~~~~~~~y~~--------~~~~l~~~l~~~l~~~~g~~~~~~~v~~~~g~~ea~~~a~~~~~----~ 141 (421)
T 3l8a_A 74 LPVPEIKEAIINYGREHIFGYNY--------FNDDLYQAVIDWERKEHDYAVVKEDILFIDGVVPAISIALQAFS----E 141 (421)
T ss_dssp CCCHHHHHHHHHHHHHCCSSCBC--------CCHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHS----C
T ss_pred CCCHHHHHHHHHHHhcCCcCCCC--------CCHHHHHHHHHHHHHHhCCCCCHHHEEEcCCHHHHHHHHHHHhc----C
Confidence 67899999999988652 22211 124577888999999998 577899999999999999999987 7
Q ss_pred CCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccC-C--CCccChHHHHhhcc-CCceEEEEecccCcccccc---cHHH
Q psy15216 85 RGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK-N--NGLITLSQLEEKIC-SDTILVSVMLVNNEIGVIQ---PILE 157 (2602)
Q Consensus 85 ~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~-~--~~~ld~e~l~~~i~-~~tklv~i~~~~npTG~~~---~l~~ 157 (2602)
+||+|+++.+.|+++...+... |.+++.++.+ . ++.+|+++|+++++ +++++|++++|+||||.++ ++++
T Consensus 142 ~gd~Vi~~~~~y~~~~~~~~~~---g~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~vil~~p~nptG~~~~~~~l~~ 218 (421)
T 3l8a_A 142 KGDAVLINSPVYYPFARTIRLN---DHRLVENSLQIINGRFEIDFEQLEKDIIDNNVKIYLLCSPHNPGGRVWDNDDLIK 218 (421)
T ss_dssp TEEEEEEEESCCHHHHHHHHHT---TEEEEEEECEEETTEEECCHHHHHHHHHHTTEEEEEEESSBTTTTBCCCHHHHHH
T ss_pred CCCEEEECCCCcHHHHHHHHHC---CCEEEeccccccCCCeeeCHHHHHHHhhccCCeEEEECCCCCCCCCcCCHHHHHH
Confidence 9999999999999987766655 9999999875 2 34689999999998 8999999999999999985 4888
Q ss_pred HHHHHHhcCCEEEEeccccccc----ccccCCC-----CCccEEEeccccccCCCC--cEEEEEe-cCCCCcccceecCC
Q psy15216 158 IGELCRSKGVIFHCDAAQAVGK----IDINIQN-----YKVDLMSFSAHKIYGPKG--IGALYIR-RNPRTRIEAQIHGG 225 (2602)
Q Consensus 158 I~~la~~~g~~livD~a~a~g~----~~~dl~~-----~~~D~~~~S~~K~~Gp~G--~G~l~~~-~~~~~~l~~~~~g~ 225 (2602)
|.++|++||+++|+|++|+... ....+.. .+.++++.|++|.+|++| +|+++++ +++.+.+.+...
T Consensus 219 l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~~~G~~~~~~~~l~~~~~~~~~-- 296 (421)
T 3l8a_A 219 IAELCKKHGVILVSDEIHQDLALFGNTHHSLNTLDASYKDFTIILSSATKTFNIAGTKNSFAIIQNESLRRKFQYRQL-- 296 (421)
T ss_dssp HHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCTTGGGTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHHHHH--
T ss_pred HHHHHHHcCCEEEEEccccccccCCCCCccHHHcCchhcCcEEEEEeChhhccCchhheEeEEcCCHHHHHHHHHHHH--
Confidence 9999999999999999987522 1112211 244588999999888766 6999988 666665554321
Q ss_pred CccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc--cCh
Q psy15216 226 GHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF--IEG 303 (2602)
Q Consensus 226 ~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~--~~~ 303 (2602)
.+..++++.++++++.++++....++++..++..++++++.+.|.+ .|++.+..+... ...++.++. .+.
T Consensus 297 ----~~~~~~~n~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~i~~~~~~~~---~~~~v~~~~~~~~~ 368 (421)
T 3l8a_A 297 ----ANNQHEVPTVGMIATQAAFQYGKPWLEELKTVIEGNIKLVIKELEA-KTKIKVMEPEGT---YLVWLDFSAYAIAQ 368 (421)
T ss_dssp ----HTTCSCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH-HCSCEEECCSBS---SEEEEECGGGTCCT
T ss_pred ----hcccCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHh-CCCceEeCCCee---EEEEEeccccCCCH
Confidence 1224568888888888888855566888999999999999999987 488888765432 233355553 466
Q ss_pred hHHHHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 304 ESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 304 ~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
.++...| +||.+++|..|... ..+++||+++ ++++++++++++|++.
T Consensus 369 ~~l~~~l~~~~gi~v~~g~~f~~~-----------------~~~~iRi~~~--~~~~~i~~~l~~l~~~ 418 (421)
T 3l8a_A 369 PQLSEKLQNEAKVVLNDGAHFGKE-----------------GKYFARLNVA--TPKNTVQEALSRIISV 418 (421)
T ss_dssp THHHHHHHHTTCEECEEGGGGCGG-----------------GTTEEEEECC--SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCEEEECchhhCCC-----------------CCCEEEEEec--CCHHHHHHHHHHHHHH
Confidence 6777766 49999998877531 2489999998 5899999999999863
|
| >1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=4.3e-23 Score=268.57 Aligned_cols=315 Identities=15% Similarity=0.156 Sum_probs=236.1
Q ss_pred CCCHHHHHHHHHHHhhhc-CCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCC
Q psy15216 8 PIDPRVVDKMIPYLRVQF-GNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRG 86 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~-~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~g 86 (2602)
++++.+.+++.+.+.... .++.. .+..+ ..+..+++|+++++++|++ +.++++++|+|+..++.++. ++|
T Consensus 53 ~~~~~v~~a~~~~~~~~~~~~~~~-~~~~g--~~~~~~~l~~~la~~~g~~--~~i~~~sGt~a~~~~~~~~~----~~g 123 (384)
T 1bs0_A 53 SHHPQIIRAWQQGAEQFGIGSGGS-GHVSG--YSVVHQALEEELAEWLGYS--RALLFISGFAANQAVIAAMM----AKE 123 (384)
T ss_dssp GGCHHHHHHHHHHHHHHCSCCCSB-TTTTC--CCHHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHHC----CTT
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCc-CcccC--ChHHHHHHHHHHHHHhCCC--cEEEeCCcHHHHHHHHHHhC----CCC
Confidence 478999999999887521 11111 11111 2346789999999999985 55666666999999999886 899
Q ss_pred CEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccCC---ceEEEEecccCcccccccHHHHHHHHH
Q psy15216 87 KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSD---TILVSVMLVNNEIGVIQPILEIGELCR 163 (2602)
Q Consensus 87 d~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~~---tklv~i~~~~npTG~~~~l~~I~~la~ 163 (2602)
|.|+++.+.|+++...+.. .|++++.++. .|+++|+++++++ ++++++++++||||.++|+++|.++|+
T Consensus 124 d~v~~~~~~~~~~~~~~~~---~g~~~~~~~~-----~d~~~l~~~l~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~ 195 (384)
T 1bs0_A 124 DRIAADRLSHASLLEAASL---SPSQLRRFAH-----NDVTHLARLLASPCPGQQMVVTEGVFSMDGDSAPLAEIQQVTQ 195 (384)
T ss_dssp CEEEEETTCCHHHHHHHHT---SSSEEEEECT-----TCHHHHHHHHHSCCSSCEEEEEESBCTTTCCBCCHHHHHHHHH
T ss_pred cEEEEcccccHHHHHHHHH---cCCCEEEeCC-----CCHHHHHHHHHhcCCCCeEEEEeCCCCCCCCccCHHHHHHHHH
Confidence 9999999999988776654 4999999873 4899999988753 789999999999999999999999999
Q ss_pred hcCCEEEEeccccccccc------ccCCCCCccEEEeccccccCCCCcEEEEEecCCCCcccceecCCCcccccc-ccCc
Q psy15216 164 SKGVIFHCDAAQAVGKID------INIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLR-SGTL 236 (2602)
Q Consensus 164 ~~g~~livD~a~a~g~~~------~dl~~~~~D~~~~S~~K~~Gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~-~gt~ 236 (2602)
+||+++|+|++|+.+... .+....++|++++|+||++||+| ||+++++++++.+.+... .+. .+++
T Consensus 196 ~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~~~G-G~~~~~~~~~~~l~~~~~------~~~~~~~~ 268 (384)
T 1bs0_A 196 QHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGFGVSG-AAVLCSSTVADYLLQFAR------HLIYSTSM 268 (384)
T ss_dssp HTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSSTTSSCC-EEEEECHHHHHHHHHHCH------HHHSSBCC
T ss_pred HcCcEEEEECCcccceecCCCCchHHhcCCCCcEEEeeccchhhccC-cEEEeCHHHHHHHHHhch------hhhcCCCC
Confidence 999999999999866421 11112357899999999999988 999999877666543211 111 2257
Q ss_pred chhHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc-cChhHHHHHh--CC
Q psy15216 237 ATHQIVGMGEAFRLARI-EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGESLLMAI--KD 312 (2602)
Q Consensus 237 ~~~~~~al~~al~~~~~-~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~L--~g 312 (2602)
+.....++.++++.... +.++..++++++++++.+.|.+ . ++++..+ . ..++.+.++. .+..++.+.| +|
T Consensus 269 ~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~-~---~~~~~~~~~~~~~~~~l~~~l~~~g 342 (384)
T 1bs0_A 269 PPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQD-L-PFTLADS-C---SAIQPLIVGDNSRALQLAEKLRQQG 342 (384)
T ss_dssp CHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTT-S-SCEECSC-C---SSBCCEEEESHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh-c-CCcccCC-C---CCEEEEEeCCHHHHHHHHHHHHHCC
Confidence 77777777788886553 5678899999999999999987 3 6776532 1 2233344542 3455666666 79
Q ss_pred eEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 313 IAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 313 I~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
|.++++..+..+ ...+++||+++.+++++++++++++|++
T Consensus 343 i~v~~~~~~~~~----------------~~~~~~Ri~~~~~~~~~~i~~~~~~l~~ 382 (384)
T 1bs0_A 343 CWVTAIRPPTVP----------------AGTARLRLTLTAAHEMQDIDRLLEVLHG 382 (384)
T ss_dssp EECCEECTTSSC----------------TTCEEECCBCCTTCCHHHHHHHHHHHHH
T ss_pred cEEEeecCCCCC----------------CCCceEEEEEcCCCCHHHHHHHHHHHHh
Confidence 999987654211 1237899999999999999999999985
|
| >3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid} | Back alignment and structure |
|---|
Probab=99.90 E-value=5.3e-23 Score=253.25 Aligned_cols=204 Identities=22% Similarity=0.315 Sum_probs=176.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCccceEEEEEcCCCCHHHHHHHHHHHHHcCCceEEEechhHHHHHHhhhccCcccceEE
Q psy15216 742 PIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFA 821 (2602)
Q Consensus 742 ~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~~~~Aa~~AGl~~~~li~EPtAAAl~y~~~~~~~~~~vl 821 (2602)
-.+....+|+++++.++.+.+.....+++|+|++|...+|++++++++.+|+++..++.||+|++++|+.. ..+
T Consensus 69 d~~~~~~~l~~~~~~~~~~~~~~~~~~v~tvp~~~~~~~~~~~~~~~~~~g~~~~~i~~e~~A~a~~~~~~------~~~ 142 (272)
T 3h1q_A 69 DYIGAIQIVRELKAKVERLLGSELFQAATAIPPGTVGRNAEACGHVVAGAGLELVTLVDEPVAAARALGIN------DGI 142 (272)
T ss_dssp THHHHHHHHHHHHHHHHHHSSSCCCEEEEECCSCC---CTTHHHHHHHHTTCEEEEEECHHHHHHHHHTCS------SEE
T ss_pred cHHHHHHHHHHHHHHHHHhcCCccCeEEEEcCCCCCHHHHHHHHHHHHHcCCeeeecccHHHHHHHHHcCC------CEE
Confidence 34666789999999999988888889999999999999999999999999999999999999999988763 259
Q ss_pred EEEeCCceEEEEEEEEECCEEEEEEEecCCCCcchHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHcccccceE
Q psy15216 822 VYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVK 901 (2602)
Q Consensus 822 V~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~l~~~~e~~K~~LS~~~~~~ 901 (2602)
|+|+||||+|+++++ ++.+. ......+||.+||+.+.+++.- + ...+|++|+.++
T Consensus 143 viDiGggst~~~~~~--~g~~~---~~~~~~~Gg~~~~~~l~~~l~~-------~-------~~~ae~~k~~~~------ 197 (272)
T 3h1q_A 143 VVDIGGGTTGIAVIE--KGKIT---ATFDEPTGGTHLSLVLAGSYKI-------P-------FEEAETIKKDFS------ 197 (272)
T ss_dssp EEEECSSCEEEEEEE--TTEEE---EECCBSCCHHHHHHHHHHHHTC-------C-------HHHHHHHHHSST------
T ss_pred EEEECCCcEEEEEEE--CCEEE---EEecCCCcHHHHHHHHHHHhCC-------C-------HHHHHHHHHhcC------
Confidence 999999999999886 44332 3456899999999999887641 1 357889998876
Q ss_pred EEEEecCCceEEEEeCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccceEEEecCccchHHHHHHHHhhccCcccCcC
Q psy15216 902 LNVKLSDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSI 981 (2602)
Q Consensus 902 ~~i~~~~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~a~~~~~~i~~V~LvGG~sr~P~v~~~l~~~f~~~~~~~~ 981 (2602)
+++++++++.++++++.+.+.+.++..+ +++.|+|+||++++|.+++++++.|+.++..+.
T Consensus 198 ---------------~~~~~~~~~~~~~~~i~~~i~~~l~~~~----~~~~ivL~GG~a~~~~l~~~l~~~l~~~v~~~~ 258 (272)
T 3h1q_A 198 ---------------RHREIMRVVRPVIEKMALIVKEVIKNYD----QTLPVYVVGGTAYLTGFSEEFSRFLGKEVQVPI 258 (272)
T ss_dssp ---------------THHHHHHHHHHHHHHHHHHHHHHTTTSC----SSCCEEEESGGGGSTTHHHHHHHHHSSCCBCCS
T ss_pred ---------------CHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCEEEEECCccchhhHHHHHHHHhCCCccccC
Confidence 6899999999999999999999988764 478999999999999999999999999999999
Q ss_pred CcchHhHHHHHHHh
Q psy15216 982 DPDKAVVFGAAIQA 995 (2602)
Q Consensus 982 ~p~~aVa~GAa~~a 995 (2602)
||++++|+|||++|
T Consensus 259 ~p~~a~a~Gaal~a 272 (272)
T 3h1q_A 259 HPLLVTPLGIALFG 272 (272)
T ss_dssp SGGGHHHHHHHTTC
T ss_pred ChHHHHHHHHHhcC
Confidence 99999999999875
|
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=2.7e-23 Score=270.88 Aligned_cols=313 Identities=14% Similarity=0.097 Sum_probs=229.4
Q ss_pred CCCHHHHHHHHHHHhhc-cCCCCCccchhHHHHHHHHHHHHHHHHHHh----CC--CCCcEEEeCCHHHHHHHHHHhhhh
Q psy15216 1404 PIDPRVVDKMIPYLRVQ-FGNPASRNHIYGWTAEKAIEKARNEVAQLI----YA--DPREIIWTSGATESNNLAIKGAAH 1476 (2602)
Q Consensus 1404 ~~~~~v~eal~~~l~~~-~~np~~~~~~~~~~~~~~~~~lr~~ia~~~----g~--~~~~iv~t~gaT~al~~al~~l~~ 1476 (2602)
+.++.+.+++.+.++.. ..++.. . ...++|+.+++++ |. ++++|++|+|+|+|++.++.++.
T Consensus 43 ~~~~~v~~a~~~~~~~~~~~y~~~------~----g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~- 111 (388)
T 1j32_A 43 NTPKHIVEAAKAALEQGKTRYGPA------A----GEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAMI- 111 (388)
T ss_dssp CCCHHHHHHHHHHHHTTCCSCCCT------T----CCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHhcCCCCCCCC------C----CCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhc-
Confidence 45788899998888642 222221 1 1234455555554 54 67789999999999999999986
Q ss_pred hhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCC--CCCcChhHHHhhccCCceEEEEeccccccccccC---h
Q psy15216 1477 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---I 1551 (2602)
Q Consensus 1477 ~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~---l 1551 (2602)
++||+|++++++|+++...+... |++++.++.++ ++.+|+++|++++++++++|++++|+||||.++| +
T Consensus 112 ---~~gd~vl~~~~~~~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l 185 (388)
T 1j32_A 112 ---EPGDEVIIPAPFWVSYPEMVKLA---EGTPVILPTTVETQFKVSPEQIRQAITPKTKLLVFNTPSNPTGMVYTPDEV 185 (388)
T ss_dssp ---CTTCEEEEESSCCTHHHHHHHHT---TCEEEEECCCGGGTTCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHH
T ss_pred ---CCCCEEEEcCCCChhHHHHHHHc---CCEEEEecCCcccCCCCCHHHHHHhcCcCceEEEEeCCCCCCCcCCCHHHH
Confidence 79999999999999987665544 99999999875 5679999999999999999999999999999987 8
Q ss_pred HHHHHHhhhcCCEEEEecccccCcc----cccCCC-----CCccEEEEccccccCCCc--eEEEEEecCCCCcccccccc
Q psy15216 1552 LEIGELCRSKGVIFHCDAAQAVGKI----DINIQN-----YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHG 1620 (2602)
Q Consensus 1552 ~~I~~ia~~~gi~vivD~a~~~g~~----~~~l~~-----~~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~~g 1620 (2602)
++|.++|++||+++|+|++|+.... ..++.. .+.++++.|+||.+|++| +|++++++++++.+.+...+
T Consensus 186 ~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~ 265 (388)
T 1j32_A 186 RAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWRVGFLAGPVPLVKAATKIQGH 265 (388)
T ss_dssp HHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTTCCEEEECCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHccccccCCEEEEeechhccCCcccceEEEEeCHHHHHHHHHHHhh
Confidence 8999999999999999999875432 111111 346899999999888888 89999988766655543211
Q ss_pred CCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEe--cCC
Q psy15216 1621 GGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN--FIE 1698 (2602)
Q Consensus 1621 ~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~--~~~ 1698 (2602)
+ ..+.+.....++.++|+....++++.++++.++++++.+.|.+ .+++.+..+... ....+.++ +.+
T Consensus 266 ~-------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~~---~~~~~~~~~~~~~ 334 (388)
T 1j32_A 266 S-------TSNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNA-MPGLECPKPDGA---FYMFPSIAKTGRS 334 (388)
T ss_dssp T-------TCSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHT-CTTCBCCCCCBT---TEECCBCGGGTCC
T ss_pred c-------ccCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHhh-CCCCcccCCCee---EEEEEecCCCCCC
Confidence 1 1233444444455666533345778888999999999999987 677766543221 11112222 234
Q ss_pred cHHHHHhc---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1699 GESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1699 ~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
..++...| +||.+++|..|... +++|++++ ++.+++++++++|++.
T Consensus 335 ~~~~~~~l~~~~gi~v~~g~~~~~~-------------------~~iRis~~--~~~~~i~~~~~~l~~~ 383 (388)
T 1j32_A 335 SLDFCSELLDQHQVATVPGAAFGAD-------------------DCIRLSYA--TDLDTIKRGMERLEKF 383 (388)
T ss_dssp HHHHHHHHHHHHCEECEEGGGGTCT-------------------TBEEEECC--SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCEEEeChhhhCCC-------------------CcEEEEec--CCHHHHHHHHHHHHHH
Confidence 55666655 49999998876432 78999997 6999999999999863
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=5.3e-23 Score=268.26 Aligned_cols=314 Identities=13% Similarity=0.112 Sum_probs=236.0
Q ss_pred CCCHHHHHHHHHHHhhc-cCCCCCccchhHHHHHHHHHHHHHHHHHHh----C--CCCCc-EEEeCCHHHHHHHHHHhhh
Q psy15216 1404 PIDPRVVDKMIPYLRVQ-FGNPASRNHIYGWTAEKAIEKARNEVAQLI----Y--ADPRE-IIWTSGATESNNLAIKGAA 1475 (2602)
Q Consensus 1404 ~~~~~v~eal~~~l~~~-~~np~~~~~~~~~~~~~~~~~lr~~ia~~~----g--~~~~~-iv~t~gaT~al~~al~~l~ 1475 (2602)
+.++.+.+++.+.++.. ..++.. ....++|+.+++++ | +++++ +++|+|+++|+..++.++.
T Consensus 39 ~~~~~v~~a~~~~~~~~~~~y~~~----------~g~~~l~~~la~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~ 108 (389)
T 1gd9_A 39 DTPQHIKEYAKEALDKGLTHYGPN----------IGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFL 108 (389)
T ss_dssp CCCHHHHHHHHHHHHTTCCSCCCT----------TCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHHHHTTTC
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCC----------CCcHHHHHHHHHHHHHHhCCCCCCCCeEEEcCChHHHHHHHHHHhC
Confidence 46788999999888652 122221 11345666777766 8 46788 9999999999999999886
Q ss_pred hhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCC--CCCcChhHHHhhccCCceEEEEeccccccccccC---
Q psy15216 1476 HFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP--- 1550 (2602)
Q Consensus 1476 ~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~--- 1550 (2602)
++||+|++++++|+++...+... |++++.++.++ ++.+|+++|++++++++++|++++|+||||.++|
T Consensus 109 ----~~gd~vl~~~~~~~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~ 181 (389)
T 1gd9_A 109 ----KDGEEVLIPTPAFVSYAPAVILA---GGKPVEVPTYEEDEFRLNVDELKKYVTDKTRALIINSPCNPTGAVLTKKD 181 (389)
T ss_dssp ----CTTCEEEEEESCCTTHHHHHHHH---TCEEEEEECCGGGTTCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHH
T ss_pred ----CCCCEEEEcCCCchhHHHHHHHC---CCEEEEeccCCccCCCCCHHHHHHhcCcCceEEEEECCCCCCCcCCCHHH
Confidence 79999999999999988777665 99999999875 4568999999999999999999999999999996
Q ss_pred hHHHHHHhhhcCCEEEEecccccCcc----cccCCC----CCccEEEEccccccCCCc--eEEEEEecCCCCcccccccc
Q psy15216 1551 ILEIGELCRSKGVIFHCDAAQAVGKI----DINIQN----YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHG 1620 (2602)
Q Consensus 1551 l~~I~~ia~~~gi~vivD~a~~~g~~----~~~l~~----~~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~~g 1620 (2602)
+++|.++|++||+++|+|++|+.+.. +.++.. .+.|+++.|+||.+|++| +||+++++++++.+.+...+
T Consensus 182 l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~ 261 (389)
T 1gd9_A 182 LEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLGFVAAPSWIIERMVKFQMY 261 (389)
T ss_dssp HHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGGCCEEEECCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccCCCCCEEEEecChhhcCCcccceEEEEECHHHHHHHHHHHhh
Confidence 88999999999999999999986543 122222 357899999999888888 79999987766666543321
Q ss_pred CCccccCCCCCcchhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEe--c
Q psy15216 1621 GGHEYGLRSGTLATHQIVGMGEAFRLARI--EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN--F 1696 (2602)
Q Consensus 1621 ~~~~~~~~~gt~~~~~~~al~~aL~~~~~--~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~--~ 1696 (2602)
..++.+...+.++.++|+.... ++++.++++.++++++.+.|.+ . ++.+..+.. .....+.++ +
T Consensus 262 -------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~---~~~~~~~~~~~~ 329 (389)
T 1gd9_A 262 -------NATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNE-M-GLPTVKPKG---AFYIFPRIRDTG 329 (389)
T ss_dssp -------TTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHH-T-TCCCCCCCB---TTEECCBCGGGT
T ss_pred -------hccCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHH-c-CCeecCCCe---eeEEEEeccCCC
Confidence 1235566666667677774333 6788889999999999999987 4 665543221 112222333 2
Q ss_pred CCcHHHHHhc---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1697 IEGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1697 ~~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
.+..++...| +||.+++|..|... ..+++||+++. +.+++++++++|++.
T Consensus 330 ~~~~~~~~~l~~~~gi~v~~g~~~~~~-----------------~~~~iRi~~~~--~~~~i~~~l~~l~~~ 382 (389)
T 1gd9_A 330 LTSKKFSELMLKEARVAVVPGSAFGKA-----------------GEGYVRISYAT--AYEKLEEAMDRMERV 382 (389)
T ss_dssp CCHHHHHHHHHHHTCEECEEGGGGCGG-----------------GTTBEEEECCS--CHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCEEEeCchhhCCC-----------------CCCeEEEEecC--CHHHHHHHHHHHHHH
Confidence 3455665554 69999998876531 13789999985 899999999999873
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.3e-23 Score=270.35 Aligned_cols=312 Identities=15% Similarity=0.125 Sum_probs=229.6
Q ss_pred CCCHHHHHHHHHHHhhh-cCCCCCCCcchhhhHHHHHHHHHHHHHHHh----C--CCCCcEEEeCCHHHHHHHHHHhccc
Q psy15216 8 PIDPRVVDKMIPYLRVQ-FGNPASRNHIYGWTAEKAIEKARNEVAQLI----Y--ADPREIIWTSGATESNNLAIKGAAH 80 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~-~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~----g--~~~~~Iv~t~g~T~al~~~~~~l~~ 80 (2602)
++|+.+.+++.+.+... ..++ ......++|+.+++++ | +++++|++|+|+|+|+++++.++.
T Consensus 44 ~~~~~v~~a~~~~~~~~~~~y~----------~~~g~~~lr~~ia~~~~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~- 112 (391)
T 3h14_A 44 GAPRGAVEALAKSLETDALGYT----------VALGLPALRQRIARLYGEWYGVDLDPGRVVITPGSSGGFLLAFTALF- 112 (391)
T ss_dssp CSCHHHHHHHHHHHC--------------------CCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHhcCCCCCC----------CCCChHHHHHHHHHHHHHHhCCCCCHHHEEEecChHHHHHHHHHHhc-
Confidence 56888999998887541 1111 1112345566666665 4 577899999999999999999987
Q ss_pred ccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCC--CccChHHHHhhccCCceEEEEecccCccccccc---H
Q psy15216 81 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN--GLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---I 155 (2602)
Q Consensus 81 ~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~--~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~---l 155 (2602)
++||+|+++.+.|+++...+... |++++.++.+++ +.+|+++++++ ++++|++++|+||||.++| +
T Consensus 113 ---~~gd~vl~~~p~~~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~~~l~~~---~~~~v~i~~p~nptG~~~~~~~l 183 (391)
T 3h14_A 113 ---DSGDRVGIGAPGYPSYRQILRAL---GLVPVDLPTAPENRLQPVPADFAGL---DLAGLMVASPANPTGTMLDHAAM 183 (391)
T ss_dssp ---CTTCEEEEEESCCHHHHHHHHHT---TCEEEEEECCGGGTTSCCHHHHTTS---CCSEEEEESSCTTTCCCCCHHHH
T ss_pred ---CCCCEEEEcCCCCccHHHHHHHc---CCEEEEeecCcccCCCCCHHHHHhc---CCeEEEECCCCCCCCccCCHHHH
Confidence 89999999999999987666554 999999998764 46899999887 7999999999999999998 7
Q ss_pred HHHHHHHHhcCCEEEEecccccccc---cccCCC-CCccEEEeccccccCCCC--cEEEEEecCCCCcccceecCCCccc
Q psy15216 156 LEIGELCRSKGVIFHCDAAQAVGKI---DINIQN-YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEY 229 (2602)
Q Consensus 156 ~~I~~la~~~g~~livD~a~a~g~~---~~dl~~-~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~ 229 (2602)
++|+++|++||+++|+|++|+.... +..... .+.++++.|+||.+|++| +||+++++++++.+.....
T Consensus 184 ~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~------ 257 (391)
T 3h14_A 184 GALIEAAQAQGASFISDEIYHGIEYEAKAVTALELTDECYVINSFSKYFSMTGWRVGWMVVPEDQVRVVERIAQ------ 257 (391)
T ss_dssp HHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCSSSEEEEESSSTTCCTTSCCEEEECCGGGHHHHHHHHH------
T ss_pred HHHHHHHHHcCCEEEEECcchhcccCCCCcChhhcCCCEEEEEechhccCCccceeEEEEeCHHHHHHHHHHHh------
Confidence 7889999999999999999974321 222222 245688899999888777 7999998877666654321
Q ss_pred cccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEc--ccChhHHH
Q psy15216 230 GLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN--FIEGESLL 307 (2602)
Q Consensus 230 ~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~--~~~~~~~~ 307 (2602)
...++++.....++.++++ ...++++..+++.++++++.+.|.+ .+......+.. ....++.++ ..+..++.
T Consensus 258 -~~~~~~~~~~~~a~~~~l~-~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 331 (391)
T 3h14_A 258 -NMFICAPHASQVAALAALD-CDAELQANLDVYKANRKLMLERLPK-AGFTRIAPPDG---AFYVYADVSDLTDDSRAFA 331 (391)
T ss_dssp -HTTCCCCHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHHHHH-HTCCCBCCCCB---TTEEEEECTTTCSCHHHHH
T ss_pred -hhccCCCHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHHH-cCCCcccCCCe---eEEEEEecCccCCCHHHHH
Confidence 1234667777776767776 4456788889999999999999987 33222222221 233444454 34666777
Q ss_pred HHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 308 MAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 308 ~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
..| +||.+++|..|..+ ...+++||+++. ++++++.++++|++.
T Consensus 332 ~~l~~~~gi~v~~g~~~~~~----------------~~~~~iRis~~~--~~~~i~~~l~~l~~~ 378 (391)
T 3h14_A 332 AEILEKAGVAVTPGLDFDPE----------------RGAGTLRFSYAR--ATADIEEGLDRLEAF 378 (391)
T ss_dssp HHHHHHHCEECEEGGGTCTT----------------TGGGEEEEECCS--CHHHHHHHHHHHHHH
T ss_pred HHHHHHCCEEEcCchhhCCC----------------CCCCeEEEEecC--CHHHHHHHHHHHHHH
Confidence 765 39999999888641 113799999986 789999999999863
|
| >3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.6e-22 Score=272.29 Aligned_cols=330 Identities=16% Similarity=0.129 Sum_probs=248.9
Q ss_pred CCHHHHHHHHHHHhhcc-CCCCCccchhHHHHHHHHHHHHHHHHHHhCCC--CCcEEEeCCHHHHHHHHHHhhhhhh-cc
Q psy15216 1405 IDPRVVDKMIPYLRVQF-GNPASRNHIYGWTAEKAIEKARNEVAQLIYAD--PREIIWTSGATESNNLAIKGAAHFY-KK 1480 (2602)
Q Consensus 1405 ~~~~v~eal~~~l~~~~-~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~--~~~iv~t~gaT~al~~al~~l~~~~-~~ 1480 (2602)
.++.+.+++.+.+.... .++.. +.......++..++++++++++|++ ++++++++|+|+|+.+++.++.... .+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~ 153 (497)
T 3mc6_A 76 GGDDLIHLQTIAYEKYCVANQLH--PDVFPAVRKMESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYALHH 153 (497)
T ss_dssp CCHHHHHHHHHHHHHTSSCBTTC--TTTCHHHHHHHHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhhcCCCC--cccChHHHHHHHHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhc
Confidence 34677888888776532 23322 2333456678889999999999987 6789999999999999999986211 01
Q ss_pred CC---CEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCC-CCCcChhHHHhhccCCceEEEEeccccccccccChHHHHH
Q psy15216 1481 RG---KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGE 1556 (2602)
Q Consensus 1481 ~g---d~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~-~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~~ 1556 (2602)
+| ++|+++.+.|+++...+..+ |++++.+++++ ++.+|+++|+++++++|++|++++|+||||.+.|+++|.+
T Consensus 154 ~g~~~~~Vi~~~~~h~~~~~~~~~~---G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~p~nptG~~~~l~~i~~ 230 (497)
T 3mc6_A 154 RGITEPEIIAPVTAHAGFDKAAYYF---GMKLRHVELDPTTYQVDLGKVKKFINKNTVLLVGSAPNFPHGIADDIEGLGK 230 (497)
T ss_dssp SCCSSCEEEEETTSCHHHHHHHHHS---CCEEEEECBCTTTCSBCTTTTGGGCCSSEEEEEEETTCTTTCCCCSCTTTTT
T ss_pred CCCCCceEEEeCCccHHHHHHHHHc---CCeEEEEecCcccCcCCHHHHHHHHhhCCEEEEEECCCCCCCcCCCHHHHHH
Confidence 45 89999999999988777666 99999999987 7889999999999999999999999999999999999999
Q ss_pred HhhhcCCEEEEecccccCcc------------cccCCCCCccEEEEccccc-cCCCceEEEEEecCCCCcc----ccccc
Q psy15216 1557 LCRSKGVIFHCDAAQAVGKI------------DINIQNYKVDLMSFSAHKI-YGPKGIGALYIRRNPRTRI----EAQIH 1619 (2602)
Q Consensus 1557 ia~~~gi~vivD~a~~~g~~------------~~~l~~~~~D~~v~S~~K~-~gp~G~G~l~~~~~~~~~l----~~~~~ 1619 (2602)
+|++||+++|+|++|+.+.. +++....++|++++|+||+ +||.|+|+++++++.+... .+.+.
T Consensus 231 la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 310 (497)
T 3mc6_A 231 IAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGVTSISCDTHKYGFAPKGSSVIMYRNSDLRMHQYYVNPAWT 310 (497)
T ss_dssp HHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCSTTSTTCCEEEEETTTTTCCCSSCEEEECSSHHHHTTTSCCBTTCT
T ss_pred HHHHhCCEEEEECcchhhhhhhhhhhcccCCccccccCCCCcEEEECchhhcCCCCCceeEEecCHHHHhhhhccccccc
Confidence 99999999999999974322 3455566799999999995 6888999999987533222 22222
Q ss_pred cCCccccCCCCCcchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecCC
Q psy15216 1620 GGGHEYGLRSGTLATHQIVGMGEAFRL-ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIE 1698 (2602)
Q Consensus 1620 g~~~~~~~~~gt~~~~~~~al~~aL~~-~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~~ 1698 (2602)
++........|+.+...++++.+++.. ...++.+..++..++++++++.|.+.++++.+..++. .....+..+..+
T Consensus 311 ~~~~~~~~~~g~~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~g~~~~~~~~---~~~v~~~~~~~~ 387 (497)
T 3mc6_A 311 GGLYGSPTLAGSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQENIPDLDIMGNPR---YSVISFSSKTLN 387 (497)
T ss_dssp TSCBCCSSSCSSCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCEECSCCC---SSEEEEECTTTT
T ss_pred CCCcCCcCcccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCC---eeEEEEeCCCCC
Confidence 222122223456666667778888874 4456788899999999999999987457888875432 223333333445
Q ss_pred cHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1699 GESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1699 ~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
..++...| +||.++.+..+ ..+|++++ .+|.+++++++++|++.
T Consensus 388 ~~~l~~~L~~~Gi~v~~~~~~----------------------~~~ri~~~-~~t~e~i~~~~~~L~~~ 433 (497)
T 3mc6_A 388 IHELSDRLSKKGWHFNALQKP----------------------VALHMAFT-RLSAHVVDEICDILRTT 433 (497)
T ss_dssp HHHHHHHHHTTTCBCEECCSS----------------------CCEEEECC-TTTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCEEEecCCCC----------------------CeEEEEEe-CCCHHHHHHHHHHHHHH
Confidence 66777776 68877543221 45899988 67999999999999974
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.2e-23 Score=267.82 Aligned_cols=314 Identities=14% Similarity=0.113 Sum_probs=233.4
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHh----CCC--CC-cEEEeCCHHHHHHHHHHhccc
Q psy15216 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI----YAD--PR-EIIWTSGATESNNLAIKGAAH 80 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~----g~~--~~-~Iv~t~g~T~al~~~~~~l~~ 80 (2602)
++++.+.+++.+.+... . .+.++ ......++|+++++++ |++ ++ +|++|+|+++|+++++.++.
T Consensus 38 ~~~~~v~~a~~~~~~~~----~--~~~y~--~~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~l~- 108 (376)
T 2dou_A 38 PPPEAPLKALAEALNDP----T--TYGYC--LKSCTLPFLEEAARWYEGRYGVGLDPRREALALIGSQEGLAHLLLALT- 108 (376)
T ss_dssp CCCHHHHHHHHHHTTCG----G--GSSCC--CHHHHHHHHHHHHHHHHHHHSCCCCTTTSEEEESSHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHhCC----C--cCCCC--CCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHHHHHHHHhc-
Confidence 35788999998887531 0 01111 1234567777777776 874 45 89999999999999999987
Q ss_pred ccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccCCceEEEEecccCccccccc---HHH
Q psy15216 81 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILE 157 (2602)
Q Consensus 81 ~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~---l~~ 157 (2602)
++||+|+++.+.|+++...+... |++++.++.+.++.+|++++++++++++++|++++|+||||.++| +++
T Consensus 109 ---~~gd~vl~~~p~y~~~~~~~~~~---g~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~ 182 (376)
T 2dou_A 109 ---EPEDLLLLPEVAYPSYFGAARVA---SLRTFLIPLREDGLADLKAVPEGVWREAKVLLLNYPNNPTGAVADWGYFEE 182 (376)
T ss_dssp ---CTTCEEEEESSCCHHHHHHHHHT---TCEEEEECBCTTSSBCGGGSCHHHHHHEEEEEECSSCTTTCCCCCHHHHHH
T ss_pred ---CCCCEEEECCCCcHhHHHHHHHc---CCEEEEeeCCCCCCCCHHHHHHhhccCceEEEECCCCCCcCccCCHHHHHH
Confidence 79999999999999987766544 999999998445568999999999888999999999999999998 567
Q ss_pred HHHHHHhcCCEEEEecccccccc---c---ccC-CCCCccEEEeccccccCCCC--cEEEEEecCCCCcccceecCCCcc
Q psy15216 158 IGELCRSKGVIFHCDAAQAVGKI---D---INI-QNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHE 228 (2602)
Q Consensus 158 I~~la~~~g~~livD~a~a~g~~---~---~dl-~~~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g~~~~ 228 (2602)
|+++|++||+++|+|++|+.+.. + +++ ...+.++++.|+||.+|++| +||+++++++++.+.+...
T Consensus 183 l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~----- 257 (376)
T 2dou_A 183 ALGLARKHGLWLIHDNPYVDQVYEGEAPSPLALPGAKERVVELFSLSKSYNLAGFRLGFALGSEEALARLERVKG----- 257 (376)
T ss_dssp HHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSTTGGGTEEEEEEHHHHHTCGGGCCEEEEECHHHHHHHHHHHH-----
T ss_pred HHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCcEEEEecchhhcCChhheeEEEecCHHHHHHHHHHHH-----
Confidence 88999999999999999976431 1 222 12345788999999888777 7999998877766654321
Q ss_pred ccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc-cChhHHH
Q psy15216 229 YGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGESLL 307 (2602)
Q Consensus 229 ~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~-~~~~~~~ 307 (2602)
....+.+.....++.++|+....++++.+++++++++++.+.|.+ . +.+..+.. +....+.++. .+..++.
T Consensus 258 --~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~--~~~~~~~~---~~~~~~~~~~~~~~~~~~ 329 (376)
T 2dou_A 258 --VIDFNQYAGVLRMGVEALKTPKEVVRGYARVYRERALGMAEALKG-V--LSLLPPRA---TMYLWGRLPEGVDDLEFG 329 (376)
T ss_dssp --HHCCCSCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHTT-T--SEECCCCB---SSEEEEECCTTCCHHHHH
T ss_pred --hcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH-h--cCccCCCe---eEEEEEECCCCCCHHHHH
Confidence 112345666666666777643456788888999999999999977 3 55553322 2334455542 3456677
Q ss_pred HHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 308 MAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 308 ~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
..| +||.+++|..|.+. ..+++||+++. +++++++++++|++
T Consensus 330 ~~l~~~gi~v~~g~~f~~~-----------------~~~~~Ris~~~--~~~~i~~~l~~l~~ 373 (376)
T 2dou_A 330 LRLVERGVALAPGRGFGPG-----------------GKGFVRIALVR--PLEELLEAAKRIRE 373 (376)
T ss_dssp HHHHHTTEECEEGGGGCGG-----------------GTTEEEEECCS--CHHHHHHHHHHHHH
T ss_pred HHHHHCCEEEcCchhhCCC-----------------CCCeEEEEecC--CHHHHHHHHHHHHH
Confidence 666 79999998876421 13789999985 78999999999985
|
| >2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-22 Score=273.10 Aligned_cols=340 Identities=16% Similarity=0.174 Sum_probs=238.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCC-CcEEEeCCHHHHHHHHHHhcc
Q psy15216 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADP-REIIWTSGATESNNLAIKGAA 79 (2602)
Q Consensus 1 Ld~a~~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~-~~Iv~t~g~T~al~~~~~~l~ 79 (2602)
||+..+++.++.+++++..... |+....+..+.....+.+++++++++++|+++ ++++||+|+|+|+..++.++.
T Consensus 104 l~~~~~~~~~~~v~~~~~~~~~----n~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~t~ggt~a~~~al~~ar 179 (497)
T 2qma_A 104 IAHLHTPPLMPAVAAEAMIAAL----NQSMDSWDQASSATYVEQKVVNWLCDKYDLSEKADGIFTSGGTQSNQMGLMLAR 179 (497)
T ss_dssp CSSSCCCCBHHHHHHHHHHHHH----CCCTTCGGGCHHHHHHHHHHHHHHHHHTTCCTTCEEEEESSHHHHHHHHHHHHH
T ss_pred eEeCCCCCcHHHHHHHHHHHhh----cccccchhhChHHHHHHHHHHHHHHHHhCCCCCCCeEEcCCchHHHHHHHHHHH
Confidence 6888889999999998876654 22222233344556677778999999999965 789999999999999998853
Q ss_pred cccc---------cC------CC-EEEEcCCCCcccHHHHHHHHhCCc-EEEEeccCCCCccChHHHHhhccCC----ce
Q psy15216 80 HFYK---------KR------GK-HIITVQTEHKSVLDSIRKLENDGF-RVTYLKPKNNGLITLSQLEEKICSD----TI 138 (2602)
Q Consensus 80 ~~~~---------~~------gd-~Vlv~~~~~~s~~~~~~~~~~~G~-~v~~v~~~~~~~ld~e~l~~~i~~~----tk 138 (2602)
.... .+ |+ +|+++.++|+++..++..+.. |. +++.+++++++.+|+++|+++|+++ ++
T Consensus 180 ~~~~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h~s~~~~~~~~g~-g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~ 258 (497)
T 2qma_A 180 DWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKSASWMGL-GEKAVMTVDANADGTMDITKLDEVIAQAKAEGLI 258 (497)
T ss_dssp HHHHHHHHCCCHHHHCSCGGGGGEEEEEETTSCTHHHHHHHHTTS-CGGGEEEECBCTTSSBCGGGHHHHHHHHHHTTCE
T ss_pred HHHHHhhcccchhhcccccccCCeEEEECCCchHHHHHHHHHcCC-CcccEEEEecCCCCcCCHHHHHHHHHHHHHCCCc
Confidence 1111 12 46 899999999999888877621 33 7999999888999999999999753 44
Q ss_pred --EEEEecccCcccccccHHHHHHHHHhcCCEEEEeccccccccccc----CCCC-CccEEEecccc-ccCCCCcEEEEE
Q psy15216 139 --LVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDIN----IQNY-KVDLMSFSAHK-IYGPKGIGALYI 210 (2602)
Q Consensus 139 --lv~i~~~~npTG~~~~l~~I~~la~~~g~~livD~a~a~g~~~~d----l~~~-~~D~~~~S~~K-~~Gp~G~G~l~~ 210 (2602)
+|++++++|+||.+.|+++|+++|++||+++|+|++|+.+..+.+ +..+ ++|++++|+|| +++|.|+|++++
T Consensus 259 ~~~vv~~~~~~~tG~~~~l~~I~~l~~~~~~~l~vD~a~~~~~~~~~~~~~~~gi~~~D~i~~s~hK~l~~p~~~G~l~~ 338 (497)
T 2qma_A 259 PFAIVGTAGTTDHGAIDDLDFIADMAVKHDMWMHVDGAYGGALILSSHKSRLKGVERAHSISVDFHKLFYQTISCGALLV 338 (497)
T ss_dssp EEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGSTTGGGGTTGGGCSEEEEETTTTTCCCSSCEEEEE
T ss_pred ceEEEEcCCCCCCCCCCCHHHHHHHHHHcCCEEEEehhhhHHHHhCcchHhhcCcccCCEEEEcchhccCCCcceEEEEE
Confidence 899999999999999999999999999999999999998876554 2333 67999999999 567888999999
Q ss_pred ecCC-CCcccc---eecCCCcc-cccc----ccCcchhHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHhhccCce
Q psy15216 211 RRNP-RTRIEA---QIHGGGHE-YGLR----SGTLATHQIVGMGEAFRL-ARIEMKEELKRILFLQKRLYNGLMESIEEI 280 (2602)
Q Consensus 211 ~~~~-~~~l~~---~~~g~~~~-~~~~----~gt~~~~~~~al~~al~~-~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~ 280 (2602)
+++. ++.+.. +..+.... .... .++..+ ...++.++++. ...++++..++..++++++.+.|.+ .+++
T Consensus 339 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~r~~-~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~-~~~~ 416 (497)
T 2qma_A 339 NDKSNFKFLLHHADYLNREHDELPNLVDKSIATTKRF-DALKVFMTMQNVGPKALGDMYDHLLAQTLEVADMIRT-NDQF 416 (497)
T ss_dssp SCGGGGGGGCC--------------------CCSCCC-THHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHT-CTTE
T ss_pred eCHHHHHHhcCCchhcCCccccCCCccccCCCCCCch-hHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhh-CCCe
Confidence 8653 222211 00000000 0000 001111 12334455653 3456788999999999999999987 7899
Q ss_pred EEeCCCCCCCCceEEEEEcccC--h----hHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEec-C
Q psy15216 281 YINGDMNNRIPHNLNISFNFIE--G----ESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTI-G 351 (2602)
Q Consensus 281 ~l~~~~~~~~~~~~~~~~~~~~--~----~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~-~ 351 (2602)
+++.++. ..++.|.+.... . ..+...+ +|+.+.++.... ..+++|+++ +
T Consensus 417 ~~~~~~~---~~~v~f~~~~~~~~~~~l~~~l~~~l~~~G~~~~~~~~~~-------------------g~~~lRis~~~ 474 (497)
T 2qma_A 417 ELLAEPS---LSTVLFRATHETADLDELNKALRLEALTRGIAVLGETIVD-------------------GKTALKFTILN 474 (497)
T ss_dssp EECSCCS---SSEEEEEECCSSSCHHHHHHHHHHHHHHHTSCBCEEEEET-------------------TEEEEEEECCC
T ss_pred EEEcCCC---ceEEEEEEcCCccCHHHHHHHHHHHHHhCCCEEEEeeEEC-------------------CEEEEEEEecC
Confidence 9875543 234555554321 1 1233333 354443221110 126899998 8
Q ss_pred CCCCHHHHHHHHHHHHhh
Q psy15216 352 RFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 352 ~~~t~edid~li~~L~~~ 369 (2602)
+++|++|+++++++|++.
T Consensus 475 ~~~t~edi~~~~~~l~~~ 492 (497)
T 2qma_A 475 PCLTTSDFESLLSKINML 492 (497)
T ss_dssp TTCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 899999999999999864
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=99.90 E-value=7.8e-23 Score=263.49 Aligned_cols=310 Identities=20% Similarity=0.163 Sum_probs=235.9
Q ss_pred eeeccC--CCCCCCHHHHHHHHHHHhh----ccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHH
Q psy15216 1395 NIVFKD--ATTPIDPRVVDKMIPYLRV----QFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNN 1468 (2602)
Q Consensus 1395 ~v~L~~--~~~~~~~~v~eal~~~l~~----~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~ 1468 (2602)
.++++. ...+.++.+.+++.+.+.. ..++|..+ ..++|+++++++|+++++|++|+|+|+|++
T Consensus 28 ~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~-----------~~~lr~~la~~~g~~~~~i~~t~g~~~al~ 96 (360)
T 3hdo_A 28 WIKLNTNENPYPPSPEVVKAILEELGPDGAALRIYPSAS-----------SQKLREVAGELYGFDPSWIIMANGSDEVLN 96 (360)
T ss_dssp SEECSSCCCSSCCCHHHHHHHHHHHTTTCGGGGSCCCSS-----------CHHHHHHHHHHHTCCGGGEEEESSHHHHHH
T ss_pred eeeccCCCCCCCCCHHHHHHHHHHHhcccchhhcCCCCc-----------hHHHHHHHHHHhCcCcceEEEcCCHHHHHH
Confidence 455542 3356789999999998876 34455431 357899999999998899999999999999
Q ss_pred HHHHhhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccCCceEEEEeccccccccc
Q psy15216 1469 LAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVI 1548 (2602)
Q Consensus 1469 ~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~ 1548 (2602)
.++.++. ++||+|+++.++|+++...+... |++++.++.+.++.+ ++++++++ ++++++++|+||||.+
T Consensus 97 ~~~~~l~----~~gd~Vl~~~p~~~~~~~~~~~~---g~~~~~v~~~~~~~~--~~l~~~~~--~~~v~i~~p~nptG~~ 165 (360)
T 3hdo_A 97 NLIRAFA----AEGEEIGYVHPSYSYYGTLAEVQ---GARVRTFGLTGDFRI--AGFPERYE--GKVFFLTTPNAPLGPS 165 (360)
T ss_dssp HHHHHHC----CTTCEEEEESSSCTHHHHHHHHH---TCEEEEECBCTTSSB--TTCCSSBC--SSEEEEESSCTTTCCC
T ss_pred HHHHHHh----CCCCEEEEcCCChHHHHHHHHHC---CCEEEEeeCCCCCCH--HHHHhhcC--CCEEEEeCCCCCCCCC
Confidence 9999986 89999999999999988777766 999999998776655 55555543 5699999999999999
Q ss_pred cChHHHHHHhhhcCCEEEEeccccc--CcccccC-CCCCccEEEEccccccCCCc--eEEEEEecCCCCccccccccCCc
Q psy15216 1549 QPILEIGELCRSKGVIFHCDAAQAV--GKIDINI-QNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGH 1623 (2602)
Q Consensus 1549 ~~l~~I~~ia~~~gi~vivD~a~~~--g~~~~~l-~~~~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~~g~~~ 1623 (2602)
+|+++|.++|+++|+++|+|++|+. +.....+ ...+.++++.|+||.+|++| +||+++++++++.+....
T Consensus 166 ~~~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~----- 240 (360)
T 3hdo_A 166 FPLEYIDELARRCAGMLVLDETYAEFAESNALELVRRHENVVVTRTLSKSYSLAGMRIGLAIARPEVIAALDKIR----- 240 (360)
T ss_dssp CCHHHHHHHHHHBSSEEEEECTTGGGSSCCCTHHHHHCSSEEEEEESTTTTSCTTSCCEEEECCHHHHHHHHHHS-----
T ss_pred cCHHHHHHHHHHCCCEEEEECChHhhCCcchhHHhccCCCEEEEecchHhhcCCccceeeEeeCHHHHHHHHHhC-----
Confidence 9999999999999999999999874 2111111 12345688889999887666 799999876665554332
Q ss_pred cccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecCCcHHHH
Q psy15216 1624 EYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLL 1703 (2602)
Q Consensus 1624 ~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~ 1703 (2602)
...+.+...+.++.++|+. ..++++.++++.++++++.+.|.+ . ++.+..+ . .....+.++..+..++.
T Consensus 241 ----~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~l~~~L~~-~-~~~~~~~-~---~~~~~~~~~~~~~~~l~ 309 (360)
T 3hdo_A 241 ----DHYNLDRLAQAACVAALRD-QAYLSECCRRIRETREWFTTELRS-I-GYDVIPS-Q---GNYLFATPPDRDGKRVY 309 (360)
T ss_dssp ----CSCCSCHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHH-T-TCEECCC-S---SSEEEEECTTCCHHHHH
T ss_pred ----CCCCCCHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHH-C-CCEEcCC-C---ccEEEEECCCCCHHHHH
Confidence 1245677777777777774 345788889999999999999988 4 7766532 1 22333444444566777
Q ss_pred Hhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1704 MAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1704 ~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
..| +||.++++..... .+++|+|++ +.+|+++++++|++
T Consensus 310 ~~l~~~gi~v~~~~~~~~-------------------~~~iRis~~---~~~e~~~l~~al~~ 350 (360)
T 3hdo_A 310 DGLYARKVLVRHFSDPLL-------------------AHGMRISIG---TREEMEQTLAALKE 350 (360)
T ss_dssp HHHHHTTEECBCCCSTTT-------------------TTSEEEECC---CHHHHHHHHHHHHH
T ss_pred HHHHHCCEEEEECCCCCC-------------------CCEEEEEcC---CHHHHHHHHHHHHH
Confidence 666 8999987654211 278999988 89999999999997
|
| >2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=3.1e-23 Score=271.08 Aligned_cols=326 Identities=13% Similarity=0.066 Sum_probs=234.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCC-CCcEEE-eCCHHHHHHHHHHhcc
Q psy15216 2 DYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYAD-PREIIW-TSGATESNNLAIKGAA 79 (2602)
Q Consensus 2 d~a~~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~-~~~Iv~-t~g~T~al~~~~~~l~ 79 (2602)
++++.+++|+.+++++.++. ++..+....+....+..+++|+++++++|++ +++|++ |+|+|+|+++++.++.
T Consensus 44 ~~~~~~~~~~~v~~a~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~i~~~t~g~t~al~~~~~~l~ 118 (398)
T 2fyf_A 44 FGSGPSKVRLEQLQTLTTTA-----AALFGTSHRQAPVKNLVGRVRSGLAELFSLPDGYEVILGNGGATAFWDAAAFGLI 118 (398)
T ss_dssp CCSSSCCCCHHHHHGGGTTT-----TTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTTCEEEEEETCHHHHHHHHHHHTC
T ss_pred ccCCCCCCCHHHHHHHhhcC-----CCccCcCcCCHHHHHHHHHHHHHHHHHhCCCCCceEEEeCCchhHHHHHHHHHhc
Confidence 34566688999999887631 1111111122344567899999999999997 368998 9999999999999987
Q ss_pred cccccCCCEEEEcCCCCcccHHHHHHHHhC--CcEEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHH
Q psy15216 80 HFYKKRGKHIITVQTEHKSVLDSIRKLEND--GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILE 157 (2602)
Q Consensus 80 ~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~--G~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~ 157 (2602)
++| .+++...+|... ....+... |++++.++++++...+. .++++|++|++++++||||.++|+++
T Consensus 119 ----~~g-v~~v~~~~~~~~--~~~~~~~~~~g~~~~~v~~~~g~~~~~-----~i~~~~~~v~~~~~~nptG~~~~~~~ 186 (398)
T 2fyf_A 119 ----DKR-SLHLTYGEFSAK--FASAVSKNPFVGEPIIITSDPGSAPEP-----QTDPSVDVIAWAHNETSTGVAVAVRR 186 (398)
T ss_dssp ----SSC-EEEEECSHHHHH--HHHHHHHCTTSCCCEEEECCTTCCCCC-----CCCTTCSEEEEESEETTTTEECCCCC
T ss_pred ----CCC-eEEEeCCHHHHH--HHHHHHHhCCCCceEEEecCCCCCCCc-----cccCCCCEEEEeCcCCCcceecchHH
Confidence 677 333344444321 12223344 78888888774332332 26788999999999999999999999
Q ss_pred HHHHHHhcCCEEEEecccccccccccCCCCCccEEEeccccccCCC-CcEEEEEecCCCCcccce---------ecCCCc
Q psy15216 158 IGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPK-GIGALYIRRNPRTRIEAQ---------IHGGGH 227 (2602)
Q Consensus 158 I~~la~~~g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K~~Gp~-G~G~l~~~~~~~~~l~~~---------~~g~~~ 227 (2602)
|.++ +|+++|+|++|+.+..++++. ++|++++|+||++|++ |+|++++++++++.+.+. +..++.
T Consensus 187 i~~~---~~~~vivD~a~~~~~~~~~~~--~~di~~~s~sK~~~~~gg~g~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 261 (398)
T 2fyf_A 187 PEGS---DDALVVIDATSGAGGLPVDIA--ETDAYYFAPQKNFASDGGLWLAIMSPAALSRIEAIAATGRWVPDFLSLPI 261 (398)
T ss_dssp CTTC---C-CEEEEECTTTTTTSCCCGG--GCSEEEECTTSTTCSCSSEEEEEECHHHHHHHHHHHHTTCCCCGGGCHHH
T ss_pred hhhh---cCCeEEEEeccccCCcccCcc--cCcEEEEecCcccCCCCceEEEEECHHHHHHhhcccccCCCCCcEEehHH
Confidence 8887 899999999999998877664 3799999999988877 599999998876655321 111110
Q ss_pred -c----ccccccCcchhHHHHHHHHHHHHH-Hh-HHHHHHHHHHHHHHHHHHHhhccCceEEeC-CCCCCCCceEEEEEc
Q psy15216 228 -E----YGLRSGTLATHQIVGMGEAFRLAR-IE-MKEELKRILFLQKRLYNGLMESIEEIYING-DMNNRIPHNLNISFN 299 (2602)
Q Consensus 228 -~----~~~~~gt~~~~~~~al~~al~~~~-~~-~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~-~~~~~~~~~~~~~~~ 299 (2602)
. .....++++..+++++.++++... .+ +++..+++.++++++.+.|.+ ++++++.. .+..+.+.++.+.++
T Consensus 262 ~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~~~~~~~~~~~~~~ 340 (398)
T 2fyf_A 262 AVENSLKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQRLYSWAQE-RPYTTPFVTDPGLRSQVVGTIDFV 340 (398)
T ss_dssp HHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHH-STTEEESCCSGGGBCSSEEEEEEC
T ss_pred HhhhcccCCCCCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHH-cCCceeccCChhhcCCcEEEEECC
Confidence 0 123457888888888889998544 33 889999999999999999988 67898874 222223335666664
Q ss_pred -ccChhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 300 -FIEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 300 -~~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
+.+..++.+.| +||.+++|... + ..+++|||++.+++++|+++++++|++.
T Consensus 341 ~~~~~~~l~~~L~~~gI~v~~g~~~-------------~------~~~~iRis~~~~~t~e~i~~~~~~l~~~ 394 (398)
T 2fyf_A 341 DDVDAGTVAKILRANGIVDTEPYRK-------------L------GRNQLRVAMFPAVEPDDVSALTECVDWV 394 (398)
T ss_dssp TTSCHHHHHHHHHHTTCBCCSCCTT-------------T------CSSEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHCCcEEecCccc-------------C------CCCEEEEEecCCCCHHHHHHHHHHHHHH
Confidence 34667777777 78988765211 1 1378999999999999999999999863
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-23 Score=276.48 Aligned_cols=319 Identities=14% Similarity=0.111 Sum_probs=240.2
Q ss_pred CCCHHHHHHHHHHHhhh--cCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCC--C-CcEEEeCCHHHHHHHHHHhccccc
Q psy15216 8 PIDPRVVDKMIPYLRVQ--FGNPASRNHIYGWTAEKAIEKARNEVAQLIYAD--P-REIIWTSGATESNNLAIKGAAHFY 82 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~--~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~--~-~~Iv~t~g~T~al~~~~~~l~~~~ 82 (2602)
++++.+++++.+.+... ..++. .....+..+++++++++++|.+ + ++|++|+|+++|++.++.++.
T Consensus 53 ~~~~~v~~a~~~~~~~~~~~~y~~------~~g~~~l~~~l~~~l~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~l~--- 123 (407)
T 3nra_A 53 EPTPGAFDLFSAGVQSGGVQAYTE------YRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATV--- 123 (407)
T ss_dssp CCCTTHHHHHHHHHHHTHHHHSCC------TTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHTTC---
T ss_pred CCcHHHHHHHHHHHhcCCCCCcCC------CCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHHHHHhC---
Confidence 67889999999988642 11211 1122457788899999999974 3 689999999999999999987
Q ss_pred ccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEecc------CCCCccChHHHHhhccCCceEEEEecccCccccccc--
Q psy15216 83 KKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP------KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP-- 154 (2602)
Q Consensus 83 ~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~------~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~-- 154 (2602)
++||+|+++.+.|+++...++.. |++++.++. ++++.+|+++|++++++++++|++++|+||||.++|
T Consensus 124 -~~gd~vl~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~ 199 (407)
T 3nra_A 124 -ARGDKVAIVQPDYFANRKLVEFF---EGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAE 199 (407)
T ss_dssp -CTTCEEEEEESCCTHHHHHHHHT---TCEEEEEEBCCCSSCCSSCCBCHHHHHHHHHTTCCEEEEESSCTTTCCCCCHH
T ss_pred -CCCCEEEEcCCcccchHHHHHHc---CCEEEEeecccccccCcCCCcCHHHHHHHHhhCCcEEEEcCCCCCCCcccCHH
Confidence 89999999999999987666655 999999998 356789999999999989999999999999999999
Q ss_pred -HHHHHHHHHhcCCEEEEecccccccc----cccC-----CCCCccEEEeccccccCCCC--cEEEEEecCCCCccccee
Q psy15216 155 -ILEIGELCRSKGVIFHCDAAQAVGKI----DINI-----QNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQI 222 (2602)
Q Consensus 155 -l~~I~~la~~~g~~livD~a~a~g~~----~~dl-----~~~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~ 222 (2602)
+++|+++|++||+++|+|++|+.+.. ...+ ...+.++++.|+||.+|++| +||+++++++++.+....
T Consensus 200 ~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~ 279 (407)
T 3nra_A 200 EIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGSRAIIARMEKLQ 279 (407)
T ss_dssp HHHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCCGGGCTTSCGGGEEEEECSSSTTCCGGGCCEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCEEEEEccccccccCCCCCCChhhcCcccCCcEEEEeCcccccCCCeeeEEEEEcCHHHHHHHHHHH
Confidence 88999999999999999999976321 1122 12446699999999888776 799999887776665432
Q ss_pred cCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc--
Q psy15216 223 HGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-- 300 (2602)
Q Consensus 223 ~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~-- 300 (2602)
. ....+++.....++.++++....++++..++.+++++++.+.|.+ ++++.+..+... ....+.++.
T Consensus 280 ~-------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~---~~~~~~~~~~~ 348 (407)
T 3nra_A 280 A-------IVSLRAAGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVLRG-CEGVFARTPQAG---SYLFPRLPKLA 348 (407)
T ss_dssp H-------HHTSSSCHHHHGGGGGTTCCCTTHHHHHHHHHHHHHHHHHHHHHT-STTCBCCCCSBS---SEECCBCCCBS
T ss_pred h-------hhccCCChHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhc-CCCceeccCCee---EEEEEeCCCCC
Confidence 1 112234445555554555422244678888889999999999987 678776544321 223333332
Q ss_pred cChhHHHHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 301 IEGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 301 ~~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
.+..++...| +||.+++|..|.+. ..+++||+++. +++++++++++|++.
T Consensus 349 ~~~~~~~~~l~~~~gi~v~~g~~~~~~-----------------~~~~iRis~~~--~~~~i~~~~~~l~~~ 401 (407)
T 3nra_A 349 VAPAEFVKILRLQAGVVVTPGTEFSPH-----------------TADSVRLNFSQ--DHEAAVAAARRIVTL 401 (407)
T ss_dssp SCHHHHHHHHHHHHCEECEEGGGTCTT-----------------CTTBEEEECCS--CHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCEEEeCchhhCCC-----------------CCCEEEEEeCC--CHHHHHHHHHHHHHH
Confidence 3556777766 49999999887642 23889999984 899999999999863
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=6.9e-23 Score=268.14 Aligned_cols=319 Identities=13% Similarity=0.092 Sum_probs=234.2
Q ss_pred CCCHHHHHHHHHHHhhh-cCCCCCCCcchhhhHHHHHHHHHHHHHHHhC--CCCCcEEEeCCHHHHHHHHHHhccccccc
Q psy15216 8 PIDPRVVDKMIPYLRVQ-FGNPASRNHIYGWTAEKAIEKARNEVAQLIY--ADPREIIWTSGATESNNLAIKGAAHFYKK 84 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~-~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g--~~~~~Iv~t~g~T~al~~~~~~l~~~~~~ 84 (2602)
++|+.+.+++.+.+... ..++ .+ ..++.+.+.+++++.+| +++++|++|+|+++|+++++.++. +
T Consensus 44 ~~~~~v~~a~~~~~~~~~~~y~------~~--~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~a~~~~~~~l~----~ 111 (399)
T 1c7n_A 44 KNPPELIEGLKKYLDETVLGYT------GP--TEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREFT----K 111 (399)
T ss_dssp CCCHHHHHHHHHHHHHCCCSSB------CC--CHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHC----C
T ss_pred CCCHHHHHHHHHHHhcCCCCCC------CC--cHHHHHHHHHHHHHHhCCCCChhhEEEcCCHHHHHHHHHHHhc----C
Confidence 56889999999988641 1111 11 22333344444444457 567899999999999999999987 7
Q ss_pred CCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccC-CC--CccChHHHHhhcc-CCceEEEEecccCccccccc---HHH
Q psy15216 85 RGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK-NN--GLITLSQLEEKIC-SDTILVSVMLVNNEIGVIQP---ILE 157 (2602)
Q Consensus 85 ~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~-~~--~~ld~e~l~~~i~-~~tklv~i~~~~npTG~~~~---l~~ 157 (2602)
+||+|+++.+.|+++...+.. .|++++.++.+ ++ +.+|+++|+++++ +++++|++++|+||||.++| +++
T Consensus 112 ~gd~vl~~~p~~~~~~~~~~~---~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~ 188 (399)
T 1c7n_A 112 PGDGVIIITPVYYPFFMAIKN---QERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQK 188 (399)
T ss_dssp TTCEEEECSSCCTHHHHHHHT---TTCEEEECCCEEETTEEECCHHHHHHHHTCTTEEEEEEESSBTTTTBCCCHHHHHH
T ss_pred CCCEEEEcCCCcHhHHHHHHH---cCCEEEecccccCCCCEEEcHHHHHHHhccCCCcEEEEcCCCCCCCcCcCHHHHHH
Confidence 899999999999998766554 49999999875 32 3589999999998 78999999999999999999 889
Q ss_pred HHHHHHhcCCEEEEeccccccc----ccccCCCC-----CccEEEeccccccCCCC--cEEEEEec-CCCCcccceecCC
Q psy15216 158 IGELCRSKGVIFHCDAAQAVGK----IDINIQNY-----KVDLMSFSAHKIYGPKG--IGALYIRR-NPRTRIEAQIHGG 225 (2602)
Q Consensus 158 I~~la~~~g~~livD~a~a~g~----~~~dl~~~-----~~D~~~~S~~K~~Gp~G--~G~l~~~~-~~~~~l~~~~~g~ 225 (2602)
|+++|++||+++|+|++|+... .+.++..+ +.++++.|+||.+|++| +||+++++ ++++.+.+....
T Consensus 189 i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~- 267 (399)
T 1c7n_A 189 IKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDA- 267 (399)
T ss_dssp HHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEECCCHHHHHHHHHHHHH-
T ss_pred HHHHHHHcCCEEEEEccccccccCCCCcccHHHcCccccCcEEEEEeChhhccccchheEEEEECCHHHHHHHHHHHhh-
Confidence 9999999999999999997632 12233222 34688999999888777 79999874 466666543321
Q ss_pred CccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc--cCh
Q psy15216 226 GHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF--IEG 303 (2602)
Q Consensus 226 ~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~--~~~ 303 (2602)
+..++++.....++.++++....++++..+++.++++++.+.|.+.+|++.+..+.. +...++.++. .+.
T Consensus 268 -----~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 339 (399)
T 1c7n_A 268 -----TSGMPFTTLGYKACEICYKECGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLIEG---TYLQWIDFRALKMDH 339 (399)
T ss_dssp -----TTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSBCCCCSB---SSEEEEECGGGCCCH
T ss_pred -----cccCCCCHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhhCCCCeEecCCc---eEEEEEEcccCCCCH
Confidence 123356777777777777643456788888999999999999976356776654322 2233455553 356
Q ss_pred hHHHHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 304 ESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 304 ~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
.++...| +||.+++|..|.+. ..+++||+++. .++++++++++|++.
T Consensus 340 ~~~~~~l~~~~gi~v~~g~~~~~~-----------------~~~~iRis~~~--~~~~l~~~l~~l~~~ 389 (399)
T 1c7n_A 340 KAMEEFMIHKAQIFFDEGYIFGDG-----------------GIGFERINLAA--PSSVIQESLERLNKA 389 (399)
T ss_dssp HHHHHHHHHTTCCCCEEGGGGCGG-----------------GTTEEEEECCS--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCEEEeCccccCCC-----------------CCCeEEEEecc--CHHHHHHHHHHHHHH
Confidence 6676666 59999988876421 13789999985 378999999999863
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.8e-23 Score=267.56 Aligned_cols=305 Identities=17% Similarity=0.148 Sum_probs=230.8
Q ss_pred CCCHHHHHHHHHHHhhc-cCCCCCccchhHHHHHHHHHHHHHHHHHHhC------CCCCcEEEeCCHHHHHHHHHHhhhh
Q psy15216 1404 PIDPRVVDKMIPYLRVQ-FGNPASRNHIYGWTAEKAIEKARNEVAQLIY------ADPREIIWTSGATESNNLAIKGAAH 1476 (2602)
Q Consensus 1404 ~~~~~v~eal~~~l~~~-~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g------~~~~~iv~t~gaT~al~~al~~l~~ 1476 (2602)
+.++.+.+++.+.++.. ..++.. ....++|+.++++++ +++++|++|+|+++|+..++.++.
T Consensus 42 ~~~~~v~~a~~~~~~~~~~~y~~~----------~~~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~- 110 (370)
T 2z61_A 42 NTPKPIVDEGIKSLKEGKTHYTDS----------RGILELREKISELYKDKYKADIIPDNIIITGGSSLGLFFALSSII- 110 (370)
T ss_dssp CCCHHHHHHHHHHHHTTCCSCCCT----------TCCHHHHHHHHHHHHHHSSCCCCGGGEEEESSHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHHcCccCCCCC----------CCCHHHHHHHHHHHHHHhCCCCChhhEEECCChHHHHHHHHHHhc-
Confidence 35788999998888652 222221 113567777777774 577899999999999999999986
Q ss_pred hhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccCCceEEEEeccccccccccChHHHHH
Q psy15216 1477 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGE 1556 (2602)
Q Consensus 1477 ~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~~ 1556 (2602)
++||+|++++++|+++...+... |++++.++ +|+++|++++++++++|++++|+||||.++|++ |.+
T Consensus 111 ---~~gd~vl~~~p~~~~~~~~~~~~---g~~~~~v~------~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~-l~~ 177 (370)
T 2z61_A 111 ---DDGDEVLIQNPCYPCYKNFIRFL---GAKPVFCD------FTVESLEEALSDKTKAIIINSPSNPLGEVIDRE-IYE 177 (370)
T ss_dssp ---CTTCEEEEESSCCTHHHHHHHHT---TCEEEEEC------SSHHHHHHHCCSSEEEEEEESSCTTTCCCCCHH-HHH
T ss_pred ---CCCCEEEEeCCCchhHHHHHHHc---CCEEEEeC------CCHHHHHHhcccCceEEEEcCCCCCcCcccCHH-HHH
Confidence 79999999999999987766544 99999887 689999999999999999999999999999999 999
Q ss_pred HhhhcCCEEEEecccccCcc---cccCC----CCCccEEEEccccccCCCc--eEEEEEecCCCCccccccccCCccccC
Q psy15216 1557 LCRSKGVIFHCDAAQAVGKI---DINIQ----NYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGL 1627 (2602)
Q Consensus 1557 ia~~~gi~vivD~a~~~g~~---~~~l~----~~~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~ 1627 (2602)
+|++||+++|+|++|+.+.. +.++. ..+.|+++.|+||.+|++| +||+++++++++.+.+...++
T Consensus 178 ~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~------ 251 (370)
T 2z61_A 178 FAYENIPYIISDEIYNGLVYEGKCYSAIEFDENLEKTILINGFSKLYAMTGWRIGYVISNDEIIEAILKLQQNL------ 251 (370)
T ss_dssp HHHHHCSEEEEECTTTTCBSSSCCCCGGGTCTTCSSEEEEEESTTTTTCGGGCCEEEECCHHHHHHHHHHHHHH------
T ss_pred HHHHcCCEEEEEcchhhcccCCCCcCHHHccCCCCcEEEEecChhccCCccceEEEEEECHHHHHHHHHHHhhc------
Confidence 99999999999999986543 22222 2357899999999888888 899999987666665433211
Q ss_pred CCCCcchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecCCcHHHHHhc
Q psy15216 1628 RSGTLATHQIVGMGEAFRL-ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI 1706 (2602)
Q Consensus 1628 ~~gt~~~~~~~al~~aL~~-~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~L 1706 (2602)
.++.+...+.++.++|+. ...++++.++++.++++++.+.|.+ . ++.+..+.. .....+.++. +..++...|
T Consensus 252 -~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~---~~~~~~~~~~-~~~~~~~~l 324 (370)
T 2z61_A 252 -FISAPTISQYAALKAFEKETEREINSMIKEFDRRRRLVLKYVKD-F-GWEVNNPIG---AYYVFPNIGE-DGREFAYKL 324 (370)
T ss_dssp -TSSSCHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHH-T-TCBCCCCCB---TTEECCBCSS-CHHHHHHHH
T ss_pred -ccCCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHH-c-CCeecCCCc---ceEEEEecCC-CHHHHHHHH
Confidence 235666667777677764 4556788889999999999999987 4 665543221 1112222332 455666555
Q ss_pred ---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1707 ---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1707 ---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
+||.+++|..|... ..+++|++++ ++.+++++++++|++
T Consensus 325 ~~~~gi~v~~g~~f~~~-----------------~~~~~Ri~~~--~~~~~i~~~~~~l~~ 366 (370)
T 2z61_A 325 LKEKFVALTPGIGFGSK-----------------GKNYIRISYA--NSYENIKEGLERIKE 366 (370)
T ss_dssp HHHHCEECEEGGGGCGG-----------------GSSBEEEECC--SCHHHHHHHHHHHHH
T ss_pred HHhCCEEEeCchhhCCC-----------------CCCEEEEEEe--CCHHHHHHHHHHHHH
Confidence 59999998876421 1378999999 699999999999986
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.90 E-value=8.4e-23 Score=267.23 Aligned_cols=316 Identities=14% Similarity=0.124 Sum_probs=227.0
Q ss_pred CCCHHHHHHHHHHHhh-----hcCCCCCCCcchhhhHHHHHHHHHHHHHHHhC--CCCCcEEEeCCHHHHHHHHHHhccc
Q psy15216 8 PIDPRVVDKMIPYLRV-----QFGNPASRNHIYGWTAEKAIEKARNEVAQLIY--ADPREIIWTSGATESNNLAIKGAAH 80 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~-----~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g--~~~~~Iv~t~g~T~al~~~~~~l~~ 80 (2602)
++++.+.+++.+.+.. ...++.. .....+.+.+.+++.+.+| +++++|++|+|+++|+++++.++.
T Consensus 48 ~~~~~v~~a~~~~~~~~~~~~~~~y~~~------~g~~~lr~~la~~l~~~~g~~~~~~~i~~~~g~~~al~~~~~~l~- 120 (398)
T 3ele_A 48 PAPQIVNDTIKELVTDYDSVALHGYTSA------QGDVETRAAIAEFLNNTHGTHFNADNLYMTMGAAASLSICFRALT- 120 (398)
T ss_dssp CCCHHHHHHHHHHHHHSCHHHHHSCCCT------TCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHhcCCccccCCcCCC------CCcHHHHHHHHHHHHHHhCCCCChHHEEEccCHHHHHHHHHHHHc-
Confidence 5788999999998865 2233211 1112344555555555556 577899999999999999999987
Q ss_pred ccccCC-CEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCC-CCccChHHHHhhccCCceEEEEecccCccccccc---H
Q psy15216 81 FYKKRG-KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---I 155 (2602)
Q Consensus 81 ~~~~~g-d~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~-~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~---l 155 (2602)
++| |+|+++.|.|+++...+... |++++.++.++ ++.+|+++|++++++++++|++++|+||||.++| +
T Consensus 121 ---~~g~d~vl~~~p~~~~~~~~~~~~---g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l 194 (398)
T 3ele_A 121 ---SDAYDEFITIAPYFPEYKVFVNAA---GARLVEVPADTEHFQIDFDALEERINAHTRGVIINSPNNPSGTVYSEETI 194 (398)
T ss_dssp ---CSTTCEEEEESSCCTHHHHHHHHT---TCEEEEECCCTTTSSCCHHHHHHTCCTTEEEEEECSSCTTTCCCCCHHHH
T ss_pred ---CCCCCEEEEeCCCchhhHHHHHHc---CCEEEEEecCCcCCcCCHHHHHHHhCcCCCEEEEcCCCCCCCCCCCHHHH
Confidence 799 99999999999987766654 99999999875 5689999999999999999999999999999999 5
Q ss_pred HHHHHHHHh------cCCEEEEeccccccc-----ccccCCCCCccEEEeccccccCCCC--cEEEEEecCCCCc--ccc
Q psy15216 156 LEIGELCRS------KGVIFHCDAAQAVGK-----IDINIQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTR--IEA 220 (2602)
Q Consensus 156 ~~I~~la~~------~g~~livD~a~a~g~-----~~~dl~~~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~--l~~ 220 (2602)
++|+++|++ ||+++|+|++|+... .+......+.++++.|+||.+|++| +||+++++++.+. +..
T Consensus 195 ~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~ 274 (398)
T 3ele_A 195 KKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFVTKYYDNTLVCYSYSKSLSLPGERIGYVLVPDEVYDKAELYA 274 (398)
T ss_dssp HHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCCGGGTCSSEEEEEESTTTSSCTTTCCEEEECCTTSTTHHHHHH
T ss_pred HHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcCChHhhcCCeEEEEehhhcCCCccceeEEEEEcchhhhHHHHHH
Confidence 667788998 999999999997522 2222233456789999999988777 8999999876652 111
Q ss_pred eecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc
Q psy15216 221 QIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF 300 (2602)
Q Consensus 221 ~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~ 300 (2602)
..... .......+++.....++..+++. . ...+++.++++++.+.|.+ . ++.+..+.. .....+.++.
T Consensus 275 ~~~~~--~~~~~~~~~~~~~~~a~~~~l~~---~--~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~---~~~~~~~~~~ 342 (398)
T 3ele_A 275 AVCGA--GRALGYVCAPSLFQKMIVKCQGA---T--GDINAYKENRDLLYEGLTR-I-GYHCFKPDG---AFYMFVKALE 342 (398)
T ss_dssp HHHHH--HHHTTCCCSCHHHHHHHTTCTTC---C--CCHHHHHHHHHHHHHHHHH-H-TCCEECCSB---SSEEEEECSS
T ss_pred HHHHH--hhhccccCCCHHHHHHHHHHhcC---H--HHHHHHHHHHHHHHHHHHH-c-CCeecCCCe---eEEEEEEcCC
Confidence 11000 00011223444444444333331 1 1356777888888888877 3 666665433 2334455555
Q ss_pred cChhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 301 IEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 301 ~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
.+..++.+.| +||.+++|..|..+ +++||+++ ++++++++++++|++.
T Consensus 343 ~~~~~~~~~l~~~gi~v~~g~~~~~~-------------------~~iRis~~--~~~e~i~~~l~~l~~~ 392 (398)
T 3ele_A 343 DDSNAFCEKAKEEDVLIVAADGFGCP-------------------GWVRISYC--VDREMIKHSMPAFEKI 392 (398)
T ss_dssp SCHHHHHHHHHTTTEECEESGGGTCT-------------------TEEEEECC--SCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCEEEeCccccCCC-------------------CeEEEEec--CCHHHHHHHHHHHHHH
Confidence 5666777766 79999999877542 79999997 6999999999999863
|
| >3dqg_A Heat shock 70 kDa protein F; structural genomics, APC90008.12, HSP70 protein, peptide-BIN domain, PSI-2, protein structure initiative; 1.72A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-23 Score=227.82 Aligned_cols=126 Identities=43% Similarity=0.682 Sum_probs=121.9
Q ss_pred eeccccccceEeeeccEEEEEEecCCCCCCCcEEEEEeccccccceeeeEeecCccccccCceeeeeEecCCCCCCCCcc
Q psy15216 1010 LLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRA 1089 (2602)
Q Consensus 1010 ~~dv~~~~~gi~~~~~~~~~ii~~~t~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~i~~~~~g~~ 1089 (2602)
+.||+|+|||+++.+|.|.+|||||++||+++++.|+|..|||+.+.|.|||||+..+.+|.+||+|.|+|+||+|+|.+
T Consensus 2 ~~DV~p~slGie~~gg~~~~lI~rnt~iP~~k~~~f~t~~dnQ~~v~i~VyqGe~~~~~dn~~LG~f~l~gipp~p~G~~ 81 (151)
T 3dqg_A 2 NADVTPLSLGIETLGGIMTKLITRNTTIPTKKSQVFSTAADGQTQVQIKVFQGEREMATSNKLLGQFSLVGIPPAPRGVP 81 (151)
T ss_dssp --CBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCCCCTTCS
T ss_pred cceeeeeEEEEEEcCCEEEEEEECcCccCEEEEEEEEECCCCcceEEEEEEEcCCcccccCcEEEEEEEeCCCCCCCCCc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEECCCeeEEEEEEEecCCceEEEEEecCCCCCHHHHHhhh
Q psy15216 1090 RIKVTYQVDADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKNGA 1135 (2602)
Q Consensus 1090 ~i~v~f~~d~~g~l~v~a~~~~~g~~~~~~~~~~~~l~~~~i~~~~ 1135 (2602)
+|+|+|+||.||+|+|+|+++.||++..++|..+.+||++||++|+
T Consensus 82 ~IeVtf~iD~nGiL~Vsa~d~~tg~~~~i~I~~~~~Ls~~ei~~~~ 127 (151)
T 3dqg_A 82 QVEVTFDIDANGIVNVSARDRGTGKEQQIVIQSSGGLSKDQIENMI 127 (151)
T ss_dssp CEEEEEEECTTSEEEEEEEETTTCCEEEEEEECSSSSCHHHHHHHH
T ss_pred EEEEEEEeccCcEEEEEEEEccCCCEeEEEEecCCCCCHHHHHHHH
Confidence 9999999999999999999999999999999999889999999986
|
| >3dob_A Heat shock 70 kDa protein F44E5.5; structural genomics, APC90015.11, peptide-binding domain, HS 2, protein structure initiative; 2.39A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.90 E-value=9.8e-24 Score=228.55 Aligned_cols=139 Identities=39% Similarity=0.606 Sum_probs=125.9
Q ss_pred eeccccccceEeeeccEEEEEEecCCCCCCCcEEEEEeccccccceeeeEeecCccccccCceeeeeEecCCCCCCCCcc
Q psy15216 1010 LLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRA 1089 (2602)
Q Consensus 1010 ~~dv~~~~~gi~~~~~~~~~ii~~~t~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~i~~~~~g~~ 1089 (2602)
+.||+|+|||+++.+|.|.+|||||++||+++++.|+|..|+|+.+.|.|||||+..+.+|..||+|.|+|+||+|+|.+
T Consensus 2 ~~Dv~p~slGie~~gg~~~~lI~rnt~iP~~k~~~f~t~~dnQ~~v~I~VyqGe~~~~~dn~~LG~f~l~gipp~p~G~~ 81 (152)
T 3dob_A 2 NADVAPLSLGIETAGGVMTNLIDRNTRIPTKACKTFTTYADNQPGVSIQVYEGERAMTRDNHRLGTFELSGIPPAPRGVP 81 (152)
T ss_dssp --CBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCCCCTTCC
T ss_pred ceeeecceEEEEEcCCEEEEEEECcCccCEEEEEEEEECCCCceEEEEEEEEcCccccccCceeEEEEEeCCCCCCCCCc
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEECCCeeEEEEEEEecCCceEEEEEecCCC-CCHHHHHhhhhccccCCCchhHHHH
Q psy15216 1090 RIKVTYQVDADGLLSIFAYEKISGKKKFITIKPFYN-MNLDEIKNGAIFNENSGISLCDALL 1150 (2602)
Q Consensus 1090 ~i~v~f~~d~~g~l~v~a~~~~~g~~~~~~~~~~~~-l~~~~i~~~~~~~~~~g~~~~~~~~ 1150 (2602)
+|+|+|+||.||+|+|+|+++.||++.+++|..+.+ ||++||++|+ ++++.+.--+...
T Consensus 82 ~IeVtf~iD~nGiL~Vsa~d~~tg~~~~i~I~~~~~~Ls~~ei~~~~--~~a~~~~~~D~~~ 141 (152)
T 3dob_A 82 QIEVTFNIDANGILNVSAEDKSTGKSNRITIQNEKGRLTQSDIDRMV--HEAKQFEKEDGEQ 141 (152)
T ss_dssp CEEEEEEECTTCCEEEEEEETTTCCEEEEEECCC----CHHHHHHHH--HHHHHTHHHHHHH
T ss_pred eEEEEEEeCCCCeEEEEEEEcCCCCEEEEEEEcCCCCCCHHHHHHHH--HHHHHHHHhhHHH
Confidence 999999999999999999999999999999998866 9999999987 6666554444443
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-22 Score=267.97 Aligned_cols=329 Identities=13% Similarity=0.128 Sum_probs=238.9
Q ss_pred CCCCCC-CCCHHHHHHHHHHHhh----hcCCCCCCCcchhhhHHHHHHHHHHHHHHHhC--CCCC-cEEEeCCHHHHHHH
Q psy15216 2 DYSATT-PIDPRVVDKMIPYLRV----QFGNPASRNHIYGWTAEKAIEKARNEVAQLIY--ADPR-EIIWTSGATESNNL 73 (2602)
Q Consensus 2 d~a~~~-~~p~~v~~a~~~~l~~----~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g--~~~~-~Iv~t~g~T~al~~ 73 (2602)
+++... ++++.+.+++.+.+.. ...++.. .....+.+.+.+++.+.+| ++++ +|++|+|+++|+++
T Consensus 43 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~------~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~ 116 (429)
T 1yiz_A 43 GQGFPDYHAPKYALNALAAAANSPDPLANQYTRG------FGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYA 116 (429)
T ss_dssp CSSSCSSCCCHHHHHHHHHHHTCSCGGGGSCCCS------SCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHhccccCccCCCCC------CCcHHHHHHHHHHHHHHhCCCCCCcCCEEEecChHHHHHH
Confidence 334333 5688999999998864 1222211 1112233344444444457 4678 99999999999999
Q ss_pred HHHhcccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCC----------CCccChHHHHhhccCCceEEEEe
Q psy15216 74 AIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN----------NGLITLSQLEEKICSDTILVSVM 143 (2602)
Q Consensus 74 ~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~----------~~~ld~e~l~~~i~~~tklv~i~ 143 (2602)
++.++. ++||+|+++.+.|+++...+.. .|++++.++.++ ++.+|+++|++++++++++|+++
T Consensus 117 ~~~~~~----~~gd~Vl~~~p~y~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~ 189 (429)
T 1yiz_A 117 TIQGHV----DEGDEVIIIEPFFDCYEPMVKA---AGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEKTKMIIIN 189 (429)
T ss_dssp HHHHHC----CTTCEEEEEESCCTTHHHHHHH---TTCEEEEEECBCCCSSSSEEGGGCBCCHHHHHHHCCTTEEEEEEE
T ss_pred HHHHhc----CCCCEEEEcCCCchhHHHHHHH---cCCEEEEEeCCcccccccccccCcccCHHHHHHHhccCceEEEEC
Confidence 999987 7999999999999998776654 499999998865 35689999999999999999999
Q ss_pred cccCccccccc---HHHHHHHHHhcCCEEEEeccccccc------ccc-cCC-CCCccEEEeccccccCCCC--cEEEEE
Q psy15216 144 LVNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQAVGK------IDI-NIQ-NYKVDLMSFSAHKIYGPKG--IGALYI 210 (2602)
Q Consensus 144 ~~~npTG~~~~---l~~I~~la~~~g~~livD~a~a~g~------~~~-dl~-~~~~D~~~~S~~K~~Gp~G--~G~l~~ 210 (2602)
+|+||||.++| +++|.++|++||+++|+|++|+... .++ .+. ..+.|+++.|+||.+|++| +||+++
T Consensus 190 ~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~ 269 (429)
T 1yiz_A 190 TPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTGWKIGWAYG 269 (429)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTTTGGGEEEEEEHHHHHTCGGGCCEEEES
T ss_pred CCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhhccCCcCceEEEecchhccCCCCcceEEEEe
Confidence 99999999996 8899999999999999999997421 122 222 3567999999999999888 899999
Q ss_pred ecCCCCcccceecCCCccccccccCcchhHHHHHHHHHHH-----H--HHhHHHHHHHHHHHHHHHHHHHhhccCceEEe
Q psy15216 211 RRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRL-----A--RIEMKEELKRILFLQKRLYNGLMESIEEIYIN 283 (2602)
Q Consensus 211 ~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~-----~--~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~ 283 (2602)
++++++.+.+... ...++.+.+...++.++|+. . ..++++.+++++++++++.+.|.+ . ++.+.
T Consensus 270 ~~~~~~~l~~~~~-------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~ 340 (429)
T 1yiz_A 270 PEALLKNLQMVHQ-------NCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAE-V-GMNPT 340 (429)
T ss_dssp CHHHHHHHHHHHH-------TTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHH-H-TCEEE
T ss_pred CHHHHHHHHHHHh-------hcccCCChHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHHHHh-C-CCccc
Confidence 8877666654321 12345666667777777775 3 445788889999999999999987 3 67765
Q ss_pred CCCCCCCCceEEEEEccc-------------ChhHHHHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEE
Q psy15216 284 GDMNNRIPHNLNISFNFI-------------EGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIR 347 (2602)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~-------------~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iR 347 (2602)
.+.. ..++.+.++.. +..++...| +||.+++|..|.... ..+ ...+++|
T Consensus 341 ~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~~--------~~~----~~~~~iR 405 (429)
T 1yiz_A 341 VPQG---GYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEP--------NKH----LGEDFVR 405 (429)
T ss_dssp ECSB---SSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHHHHTSEECBCGGGGSCGG--------GGG----GTTTEEE
T ss_pred CCCc---ceEEEEEcccccccccccccccCCCHHHHHHHHHHhCCEEEeCchHhCCCc--------ccC----CCCCeEE
Confidence 4422 23444555432 234565544 699999987664320 000 0137999
Q ss_pred EecCCCCCHHHHHHHHHHHHhh
Q psy15216 348 FTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 348 is~~~~~t~edid~li~~L~~~ 369 (2602)
|+++ ++++++++++++|++.
T Consensus 406 is~~--~~~e~i~~~l~~l~~~ 425 (429)
T 1yiz_A 406 YCFF--KKDENLQKAAEILRKW 425 (429)
T ss_dssp EECC--SCHHHHHHHHHHHHHH
T ss_pred EEec--CCHHHHHHHHHHHHHh
Confidence 9998 4899999999999863
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.9e-22 Score=259.07 Aligned_cols=280 Identities=18% Similarity=0.178 Sum_probs=216.3
Q ss_pred HHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCC-CEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCC
Q psy15216 1439 IEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRG-KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN 1517 (2602)
Q Consensus 1439 ~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~g-d~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~ 1517 (2602)
..++|+++++++++++++|++|+|++++++.++.++. ++| |+|+++.|+|+++...+... |++++.++.+++
T Consensus 60 ~~~lr~~la~~~~~~~~~v~~~~G~~~ai~~~~~~~~----~~g~d~Vl~~~p~~~~~~~~~~~~---g~~~~~v~~~~~ 132 (356)
T 1fg7_A 60 PKAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAFC----EPGKDAILYCPPTYGMYSVSAETI---GVECRTVPTLDN 132 (356)
T ss_dssp CHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHC----CTTTCEEEECSSSCTHHHHHHHHH---TCEEEECCCCTT
T ss_pred HHHHHHHHHHHhCCChHHEEEcCCHHHHHHHHHHHHh----CCCCCEEEEeCCChHHHHHHHHHc---CCEEEEeeCCCC
Confidence 4678999999999988999999999999999999986 799 99999999999988777666 999999998877
Q ss_pred CCcChhHHHhhccCCceEEEEeccccccccccChHHH---HHHhhhcCCEEEEecccccCccc---ccC-CCCCccEEEE
Q psy15216 1518 GLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEI---GELCRSKGVIFHCDAAQAVGKID---INI-QNYKVDLMSF 1590 (2602)
Q Consensus 1518 ~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I---~~ia~~~gi~vivD~a~~~g~~~---~~l-~~~~~D~~v~ 1590 (2602)
+.+|+++++++++ ++++|++++|+||||.++|.++| +++|+ ||+++|+|++|+..... .++ ...+.++++.
T Consensus 133 ~~~d~~~l~~~i~-~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~ 210 (356)
T 1fg7_A 133 WQLDLQGISDKLD-GVKVVYVCSPNNPTGQLINPQDFRTLLELTR-GKAIVVADEAYIEFCPQASLAGWLAEYPHLAILR 210 (356)
T ss_dssp SCCCHHHHHTSCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSGGGCSGGGTTTCTTEEEEE
T ss_pred CCCCHHHHHHHhc-CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-CCCEEEEEccchhhcCCCcHHHHHhhCCCEEEEe
Confidence 7899999999998 89999999999999999995555 55566 99999999999743311 222 3345678999
Q ss_pred ccccccCCCc--eEEEEEecCCCCccccccccCCccccCCCCCcchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q psy15216 1591 SAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLAR-IEMKEELKRILFLQKRLYN 1667 (2602)
Q Consensus 1591 S~~K~~gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~-~~~~~~~~~~~~l~~~l~~ 1667 (2602)
|+||.+|++| +||+++++++++.+..... ..+.+...+.++.++|+... .++++..+++.++++++.+
T Consensus 211 s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~---------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 281 (356)
T 1fg7_A 211 TLSKAFALAGLRCGFTLANEEVINLLMKVIA---------PYPLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIA 281 (356)
T ss_dssp ESSSTTCCGGGCCEEEEECHHHHHHHHHHSC---------SSCSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHhhcCchhhhEEEEeCHHHHHHHHHhcC---------CCCCCHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHH
Confidence 9999998888 7999998876665544321 12456666666656665321 2367888889999999999
Q ss_pred HHhhcCCcEEEeCCCCCCCCceEEEEEecCCcHHHHHhc--CCEEEcc-ccccCCCCCChhHHHHHcCCCccccCCeEEE
Q psy15216 1668 GLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDIAVSS-GSACTSASLEPSYVLRALGCNDELAHSSIRF 1744 (2602)
Q Consensus 1668 ~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~v~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRl 1744 (2602)
.|.+ .+++....+.. .....+.++ +..++...| +||.+++ |..|... +++||
T Consensus 282 ~L~~-~~~~~~~~~~~---~~~~~~~~~--~~~~l~~~L~~~gI~v~~~g~~~~~~-------------------~~iRi 336 (356)
T 1fg7_A 282 ALKE-IPCVEQVFDSE---TNYILARFK--ASSAVFKSLWDQGIILRDQNKQPSLS-------------------GCLRI 336 (356)
T ss_dssp HHHH-STTEEEECCCS---SSEEEEEET--THHHHHHHHHHTTEECEECTTSTTCT-------------------TEEEE
T ss_pred HHHh-CCCceEECCCC---CeEEEEECC--CHHHHHHHHHHCCEEEEECCCCCCCC-------------------CeEEE
Confidence 9987 66543332322 233334443 556666666 8999998 7665432 68999
Q ss_pred ecCCCCCHHHHHHHHHHHHH
Q psy15216 1745 TIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1745 s~~~~~t~edid~li~~L~~ 1764 (2602)
|++ +.+|+++++++|++
T Consensus 337 s~~---~~~e~~~~~~~l~~ 353 (356)
T 1fg7_A 337 TVG---TREESQRVIDALRA 353 (356)
T ss_dssp ECC---CHHHHHHHHHHHHT
T ss_pred EeC---CHHHHHHHHHHHHh
Confidence 997 68999999999986
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.90 E-value=2.3e-22 Score=259.36 Aligned_cols=313 Identities=17% Similarity=0.142 Sum_probs=240.0
Q ss_pred eeeeccC--CCCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHH
Q psy15216 1394 TNIVFKD--ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAI 1471 (2602)
Q Consensus 1394 ~~v~L~~--~~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al 1471 (2602)
..+.++. +..+.++.+.+++.+.++....+|+. ...++|++++++++++++++++|+|+|+|++.++
T Consensus 27 ~~idl~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~-----------~~~~l~~~la~~~~~~~~~i~~~~g~t~al~~~~ 95 (361)
T 3ftb_A 27 ELLDYSSNINPLGIPKSFLNNIDEGIKNLGVYPDV-----------NYRRLNKSIENYLKLKDIGIVLGNGASEIIELSI 95 (361)
T ss_dssp -CEETTCCCCTTCSCHHHHTTHHHHHHGGGSCCCT-----------TCHHHHHHHHHHHTCCSCEEEEESSHHHHHHHHH
T ss_pred CEEEecCCCCCCCCCHHHHHHHHHHHHHhcCCCCc-----------cHHHHHHHHHHHhCCCcceEEEcCCHHHHHHHHH
Confidence 3455542 23456889999999988876556543 1468899999999998899999999999999998
Q ss_pred HhhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccCCceEEEEeccccccccccC-
Q psy15216 1472 KGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP- 1550 (2602)
Q Consensus 1472 ~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~- 1550 (2602)
.++ |+|+++.++|+++...+... |++++.++.++++.++++++++++++ +++|++++|+||||.++|
T Consensus 96 ~~~--------d~vi~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~l~~~l~~-~~~v~i~~p~nptG~~~~~ 163 (361)
T 3ftb_A 96 SLF--------EKILIIVPSYAEYEINAKKH---GVSVVFSYLDENMCIDYEDIISKIDD-VDSVIIGNPNNPNGGLINK 163 (361)
T ss_dssp TTC--------SEEEEEESCCTHHHHHHHHT---TCEEEEEECCTTSCCCHHHHHHHTTT-CSEEEEETTBTTTTBCCCH
T ss_pred HHc--------CcEEEecCChHHHHHHHHHc---CCeEEEeecCcccCCCHHHHHHhccC-CCEEEEeCCCCCCCCCCCH
Confidence 765 89999999999987766655 99999999988778899999999998 999999999999999998
Q ss_pred --hHHHHHHhhhcCCEEEEecccccCccc-----ccC-CCCCccEEEEccccccCCCc--eEEEE-EecCCCCccccccc
Q psy15216 1551 --ILEIGELCRSKGVIFHCDAAQAVGKID-----INI-QNYKVDLMSFSAHKIYGPKG--IGALY-IRRNPRTRIEAQIH 1619 (2602)
Q Consensus 1551 --l~~I~~ia~~~gi~vivD~a~~~g~~~-----~~l-~~~~~D~~v~S~~K~~gp~G--~G~l~-~~~~~~~~l~~~~~ 1619 (2602)
+++|+++|++||+++|+|++|+..... ... ...+..+++.|+||.+|++| +|+++ .++++.+.+....
T Consensus 164 ~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~g~~~~~~~~~~~~~~~~~- 242 (361)
T 3ftb_A 164 EKFIHVLKLAEEKKKTIIIDEAFIEFTGDPSSSFVGEIKNYSCLFIIRAMTKFFAMPGIRFGYGITNNKEIAAKIKAKQ- 242 (361)
T ss_dssp HHHHHHHHHHHHHTCEEEEECSSGGGTCCTTSSSGGGTTTCSSEEEEEESSSTTSCGGGCCEEEEESCHHHHHHHHTTS-
T ss_pred HHHHHHHHHhhhcCCEEEEECcchhhcCCcccchhHhcccCCCEEEEeeChhhcCCCCcceeEEEeCCHHHHHHHHhhC-
Confidence 666778888999999999998743321 111 12234577889999888766 79988 5655554443321
Q ss_pred cCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEE-EeCCCCCCCCceEEEEEecCC
Q psy15216 1620 GGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIY-INGDMNNRIPHNLNISFNFIE 1698 (2602)
Q Consensus 1620 g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~-i~~~~~~~~~~~~~~~~~~~~ 1698 (2602)
..++++...+.++.++|+. ..++++.++++.++++++.+.|.+ .+++. +..+. .....+.++..+
T Consensus 243 --------~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~~~----~~~~~~~~~~~~ 308 (361)
T 3ftb_A 243 --------NPWNINCFAEMAAINCLKD-TNYIEESLLWIKKERKRFIEELNK-IGFIKRVFSPH----ANFVLCRLENIS 308 (361)
T ss_dssp --------CTTCSCHHHHHHHHHTSSC-HHHHHHHHHHHHHHHHHHHHHHHH-SSSEEEEECCS----SSEEEEEESSSC
T ss_pred --------CCCCCCHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHh-CCCCceecCCC----CeEEEEEcCCCC
Confidence 1346777777777777763 355788889999999999999987 78887 66432 223445555445
Q ss_pred cHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1699 GESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1699 ~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
..++...| +||.+++|..|... ..+++|++++ +.+++++++++|++
T Consensus 309 ~~~l~~~l~~~gi~v~~g~~~~~~-----------------~~~~iRis~~---~~~~~~~l~~~l~~ 356 (361)
T 3ftb_A 309 GEKLYDSLLKEDIVIRRCCNFIGL-----------------DDSFVRFAIK---DEKKNTKFLRALKG 356 (361)
T ss_dssp HHHHHHHHHTTTEECEECTTSTTC-----------------CTTEEEEECC---CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCeEEeeCccCCCC-----------------CCCEEEEEcC---CHHHHHHHHHHHHH
Confidence 66777666 79999999877532 1389999987 88999999999986
|
| >2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=5.1e-23 Score=267.27 Aligned_cols=308 Identities=14% Similarity=0.095 Sum_probs=221.9
Q ss_pred cchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHHH-HHhCCc
Q psy15216 33 HIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDGF 111 (2602)
Q Consensus 33 ~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~-~~~~G~ 111 (2602)
|.+++...+..+++++++|+++|++ ++++++|+++|+++++.++. ++||+|+++.++|+++...+.. +++.|+
T Consensus 74 ~~y~r~~~p~~~~le~~lA~l~g~~--~~i~~ssGt~Ai~~al~~l~----~~Gd~Vi~~~~~y~~~~~~~~~~l~~~G~ 147 (415)
T 2fq6_A 74 LFYGRRGTLTHFSLQQAMCELEGGA--GCVLFPCGAAAVANSILAFI----EQGDHVLMTNTAYEPSQDFCSKILSKLGV 147 (415)
T ss_dssp CCCTTTCCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHTTC----CTTCEEEEETTSCHHHHHHHHHTGGGGTC
T ss_pred ccccCCCCchHHHHHHHHHHHhCCC--eEEEeCCHHHHHHHHHHHHh----CCCCEEEEeCCCchHHHHHHHHHHHHcCc
Confidence 4455445567889999999999975 56667889999999999887 7999999999999998877754 466799
Q ss_pred EEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHh--cCCEEEEecccccccccccCCCCCc
Q psy15216 112 RVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRS--KGVIFHCDAAQAVGKIDINIQNYKV 189 (2602)
Q Consensus 112 ~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~--~g~~livD~a~a~g~~~~dl~~~~~ 189 (2602)
++++++.+ |+++|+++++++|++|++++|+||||.+.|+++|+++|++ +|+++++|++|+.+.....+ .+++
T Consensus 148 ~v~~v~~~-----d~~~le~ai~~~tklV~~e~~~NptG~v~dl~~I~~la~~~~~g~~livD~a~a~~~~~~p~-~~g~ 221 (415)
T 2fq6_A 148 TTSWFDPL-----IGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKAL-DFGI 221 (415)
T ss_dssp EEEEECTT-----CGGGGGGGCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEECTTTTTTSSCGG-GGTC
T ss_pred EEEEECCC-----CHHHHHHhhccCCcEEEEECCCCCCCEeecHHHHHHHHHhhcCCCEEEEECCCcccccCCcc-ccCC
Confidence 99999754 8999999999999999999999999999999999999999 99999999999866432222 3678
Q ss_pred cEEEeccccccCCCC---cEEEEEecCCCCcccceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy15216 190 DLMSFSAHKIYGPKG---IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQ 266 (2602)
Q Consensus 190 D~~~~S~~K~~Gp~G---~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~ 266 (2602)
|++++|+||++|++| .|+++.++++++.+..... ...++++....+.+..+++. +....++..+++
T Consensus 222 Div~~S~sK~lg~~g~~~~G~l~~~~~~~~~l~~~~~-------~~G~~~~~~~a~~~~~~l~~----l~~r~~~~~~n~ 290 (415)
T 2fq6_A 222 DVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAY-------LMGQMVDADTAYITSRGLRT----LGVRLRQHHESS 290 (415)
T ss_dssp SEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHHH-------HTTCCCCHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred eEEEEeCccccCCCCCceEEEEEeCHHHHHHHHHHHH-------hcCCCCCHHHHHHHHhhhhH----HHHHHHHHHHHH
Confidence 999999999888877 6999998876555543221 11122333323333334432 344455556667
Q ss_pred HHHHHHHhhccCceEEe-CCC--C-----------CCCCceEEEEEccc----ChhHHHHHh--CCeEEcccccCCCCCC
Q psy15216 267 KRLYNGLMESIEEIYIN-GDM--N-----------NRIPHNLNISFNFI----EGESLLMAI--KDIAVSSGSACTSASL 326 (2602)
Q Consensus 267 ~~l~~~L~~~~~g~~l~-~~~--~-----------~~~~~~~~~~~~~~----~~~~~~~~L--~gI~v~~g~~~~~~~~ 326 (2602)
..+.+.|.+ .|.+.-+ -|. . ...+.++.|.+++. +...++..| .++.++.|..|+....
T Consensus 291 ~~l~~~L~~-~~~v~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~g~~~~~~~~~~l~~l~~~~~a~s~G~~~s~~~~ 369 (415)
T 2fq6_A 291 LKVAEWLAE-HPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFSMAYSWGGYESLILA 369 (415)
T ss_dssp HHHHHHHHT-CTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCCCHHHHHHHHTTCSSCEECSCCCSSSCEEEE
T ss_pred HHHHHHHHc-CCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCCCCHHHHHHHHHhCCcCeEeccCCCCceeEEe
Confidence 777777766 4554321 111 0 12355667777652 345566665 4678888888765311
Q ss_pred -ChHHHH-----HHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 327 -EPSYVL-----RALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 327 -~~~~~~-----~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
.|.... ..+|+. ++.||+|+|.++++++++.+.++|++
T Consensus 370 ~~p~~~s~~~~~~~~g~~----~~~iRlS~G~e~~~d~i~~l~~al~~ 413 (415)
T 2fq6_A 370 NQPEHIAAIRPQGEIDFS----GTLIRLHIGLEDVDDLIADLDAGFAR 413 (415)
T ss_dssp ECHHHHHTTCTTCCCCCC----SCEEEEECCSSCHHHHHHHHHHHHHT
T ss_pred cCCCccccccchhhcCCC----CCEEEEEecCCCHHHHHHHHHHHHHh
Confidence 121111 124443 48999999999999999999999974
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.90 E-value=5.5e-23 Score=269.04 Aligned_cols=314 Identities=13% Similarity=0.067 Sum_probs=235.4
Q ss_pred CCCHHHHHHHHHHHhh--hcCCCCCCCcchhhhHHHHHHHHHHHHHHHh----CCC--C-CcEEEeCCHHHHHHHHHHhc
Q psy15216 8 PIDPRVVDKMIPYLRV--QFGNPASRNHIYGWTAEKAIEKARNEVAQLI----YAD--P-REIIWTSGATESNNLAIKGA 78 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~--~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~----g~~--~-~~Iv~t~g~T~al~~~~~~l 78 (2602)
++++.+.+++.+.+.. ...++.. ....++|+++++++ |++ + ++|++|+|+++|+++++.++
T Consensus 60 ~~~~~v~~a~~~~~~~~~~~~y~~~----------~g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G~~~al~~~~~~l 129 (404)
T 2o1b_A 60 PTPQGIIDHFQKALTIPENQKYGAF----------HGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNGLVAVPTCV 129 (404)
T ss_dssp CCCHHHHHHHHHHTTCHHHHSCCCT----------TCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCCC----------CCCHHHHHHHHHHHHHHhCCCCCCcccEEEcCCcHHHHHHHHHHh
Confidence 3578899999888743 2223321 11345666666666 864 4 78999999999999999998
Q ss_pred ccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCC-CCccChHHHHhhccCCceEEEEecccCccccccc---
Q psy15216 79 AHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP--- 154 (2602)
Q Consensus 79 ~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~-~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~--- 154 (2602)
. ++||+|+++.+.|+++...+... |++++.++.++ ++.+|+++|++++++++++|++++|+||||.++|
T Consensus 130 ~----~~gd~Vl~~~p~y~~~~~~~~~~---g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~ 202 (404)
T 2o1b_A 130 I----NPGDYVLLPDPGYTDYLAGVLLA---DGKPVPLNLEPPHYLPDWSKVDSQIIDKTKLIYLTYPNNPTGSTATKEV 202 (404)
T ss_dssp C----CTTCEEEEEESCCSSHHHHHHHT---TCEEEEEECCTTTCCCCGGGSCHHHHHHEEEEEECSSCTTTCCCCCHHH
T ss_pred c----CCCCEEEEcCCCchhHHHHHHHC---CCEEEEeccCcccCcCCHHHHHHhhccCceEEEEcCCCCCCCccCCHHH
Confidence 7 79999999999999988776554 99999999876 4458999999999888999999999999999997
Q ss_pred HHHHHHHHHhcCCEEEEeccccccc---ccccCCCC----CccEEEeccccccCCCC--cEEEEEecCCCCcccceecCC
Q psy15216 155 ILEIGELCRSKGVIFHCDAAQAVGK---IDINIQNY----KVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGG 225 (2602)
Q Consensus 155 l~~I~~la~~~g~~livD~a~a~g~---~~~dl~~~----~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g~ 225 (2602)
+++|+++|++||+++|+|++|+... .+.++..+ +.++++.|+||.+|++| +||+++++++++.+.+...
T Consensus 203 l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~-- 280 (404)
T 2o1b_A 203 FDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASENGKDVAIEIYSLSKGYNMSGFRVGFAVGNKDMIQALKKYQT-- 280 (404)
T ss_dssp HHHHHHHHTTSSCEEEEECTTTTCBSSSCCCCGGGSTTHHHHEEEEEESTTTTTCGGGCCEEEEECHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCCEEEEEecchhccCchhheEeEecCHHHHHHHHHHHh--
Confidence 6788999999999999999997643 12222222 45789999999988777 7999998877766654321
Q ss_pred CccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEc-ccChh
Q psy15216 226 GHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN-FIEGE 304 (2602)
Q Consensus 226 ~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~-~~~~~ 304 (2602)
...++++.+...++.++|+....++++.+++++++++++.+.|.+ . ++.+..+.. +....+.++ ..+..
T Consensus 281 -----~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~---g~~~~~~~~~~~~~~ 350 (404)
T 2o1b_A 281 -----HTNAGMFGALQDAAIYALNHYDDFLEEQSNVFKTRRDRFEAMLAK-A-DLPFVHAKG---GIYVWLETPPGYDSE 350 (404)
T ss_dssp -----HHCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH-T-TCCEECCCB---SSEEEEECCTTCCHH
T ss_pred -----hccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHh-c-CCeecCCCc---ceEEEEeCCCCCCHH
Confidence 112456677777777777643456788888999999999999987 3 676654322 223444554 23456
Q ss_pred HHHHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 305 SLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 305 ~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
++...| +||.+++|..|... ..+++||+++. ++++++.++++|++.
T Consensus 351 ~l~~~l~~~~gi~v~~g~~f~~~-----------------~~~~iRis~~~--~~e~l~~~l~~l~~~ 399 (404)
T 2o1b_A 351 QFEQFLVQEKSILVAPGKPFGEN-----------------GNRYVRISLAL--DDQKLDEAAIRLTEL 399 (404)
T ss_dssp HHHHHHHHHHCEECEESGGGCGG-----------------GTTEEEEECCS--CTTHHHHHHHHHHGG
T ss_pred HHHHHHHHHCCEEEeCchhhCcC-----------------CCCeEEEEEcC--CHHHHHHHHHHHHHH
Confidence 666664 49999998877431 13789999985 778999999999863
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.9e-23 Score=272.71 Aligned_cols=314 Identities=14% Similarity=0.129 Sum_probs=233.2
Q ss_pred CCCHHHHHHHHHHHhhh--cCCCCCCCcchhhhHHHHHHHHHHHHHHHh----CC--CC-CcEEEeCCHHHHHHHHHHhc
Q psy15216 8 PIDPRVVDKMIPYLRVQ--FGNPASRNHIYGWTAEKAIEKARNEVAQLI----YA--DP-REIIWTSGATESNNLAIKGA 78 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~--~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~----g~--~~-~~Iv~t~g~T~al~~~~~~l 78 (2602)
++++.+.+++.+.+... ..++. .....++|+.+++++ |. ++ ++|++|+|+++|+++++.++
T Consensus 50 ~~~~~v~~a~~~~~~~~~~~~y~~----------~~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~t~g~~~a~~~~~~~~ 119 (412)
T 2x5d_A 50 PTPPHIVEKLCTVAQREDTHGYST----------SRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGSKEGLAHLMLAT 119 (412)
T ss_dssp CCCHHHHHHHHHTC---------C----------TTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCC----------CCCcHHHHHHHHHHHHHHhCCCCCCCcCEEEcCChHHHHHHHHHHh
Confidence 46788888888876532 11110 112356677777777 85 56 69999999999999999998
Q ss_pred ccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCC--CccChHHHHhhccCCceEEEEecccCccccccc--
Q psy15216 79 AHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN--GLITLSQLEEKICSDTILVSVMLVNNEIGVIQP-- 154 (2602)
Q Consensus 79 ~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~--~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~-- 154 (2602)
. ++||+|+++.+.|+++...+... |++++.++.+++ +.+|+++|++++++++++|++++|+||||.++|
T Consensus 120 ~----~~gd~Vl~~~p~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~l~~p~nptG~~~~~~ 192 (412)
T 2x5d_A 120 L----DHGDTILVPNPSYPIHIYGAVIA---GAQVRSVPLVPGIDFFNELERAIRESIPKPRMMILGFPSNPTAQCVELD 192 (412)
T ss_dssp C----CTTCEEEEEESCCHHHHHHHHHH---TCEEEEEECSTTSCHHHHHHHHHHTEESCCSEEEEESSCTTTCCCCCHH
T ss_pred C----CCCCEEEEcCCCchhHHHHHHHc---CCEEEEeecCCccCCCCCHHHHHHhcccCceEEEECCCCCCCCCcCCHH
Confidence 7 79999999999999988777665 999999998764 347999999999989999999999999999998
Q ss_pred -HHHHHHHHHhcCCEEEEecccccccc----cccCCC----CCccEEEeccccccCCCC--cEEEEEecCCCCcccceec
Q psy15216 155 -ILEIGELCRSKGVIFHCDAAQAVGKI----DINIQN----YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIH 223 (2602)
Q Consensus 155 -l~~I~~la~~~g~~livD~a~a~g~~----~~dl~~----~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~ 223 (2602)
+++|.++|++||+++|+|++|+.+.. +.++.. .+.++++.|+||.+|++| +||+++++++++.+.+...
T Consensus 193 ~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~ 272 (412)
T 2x5d_A 193 FFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLSKSYNMAGWRIGFMVGNPELVSALARIKS 272 (412)
T ss_dssp HHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTGGGTEEEEEECC-CCSCTTSCCEEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhhccCccCcEEEEecCccccCCcccceEEEEcCHHHHHHHHHHHh
Confidence 57899999999999999999986432 122222 356899999999988777 7999998877766654321
Q ss_pred CCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc-c-
Q psy15216 224 GGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-I- 301 (2602)
Q Consensus 224 g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~-~- 301 (2602)
...++++.+...++.++|+....++++..++++++++++.+.|.+ . ++.+..+.. ..+..+.++. .
T Consensus 273 -------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~---g~~~~~~~~~~~~ 340 (412)
T 2x5d_A 273 -------YHDYGTFTPLQVAAIAALEGDQQCVRDIARQYQQRRDVLVKGLRE-A-GWMVENPKA---SMYVWAKIPEPYA 340 (412)
T ss_dssp -------HHCCCCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHH-H-TCCCCCCSB---SSEEEEECCTTTG
T ss_pred -------hhccCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH-C-CCEecCCCe---eeEEEEEcCCccC
Confidence 123456777777776777643456788888999999999999987 3 665543321 2234445542 2
Q ss_pred --ChhHHHHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 302 --EGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 302 --~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
+..++...| +||.+++|..|.+. ..+++||+++. ++++++.++++|++.
T Consensus 341 ~~~~~~~~~~l~~~~gi~v~~g~~f~~~-----------------~~~~iRis~~~--~~~~l~~~l~~l~~~ 394 (412)
T 2x5d_A 341 HLGSLEFAKKLLQDAKVSVSPGIGFGDY-----------------GDDHVRFALIE--NRDRLRQAVRGIKAM 394 (412)
T ss_dssp GGCHHHHHHHHHHHHCEECEEGGGGCGG-----------------GTTEEEEECCS--CHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCEEEeCchhhCCC-----------------CCCeEEEEecC--CHHHHHHHHHHHHHH
Confidence 456677666 49999999877421 13789999986 889999999999864
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=2.7e-23 Score=272.47 Aligned_cols=314 Identities=13% Similarity=0.126 Sum_probs=233.0
Q ss_pred CCCHHHHHHHHHHHhhcc-CCCCCccchhHHHHHHHHHHHHHHHHHHh------CCCCCcEEEeCCHHHHHHHHHHhhhh
Q psy15216 1404 PIDPRVVDKMIPYLRVQF-GNPASRNHIYGWTAEKAIEKARNEVAQLI------YADPREIIWTSGATESNNLAIKGAAH 1476 (2602)
Q Consensus 1404 ~~~~~v~eal~~~l~~~~-~np~~~~~~~~~~~~~~~~~lr~~ia~~~------g~~~~~iv~t~gaT~al~~al~~l~~ 1476 (2602)
+.++.+.+++.+.+.... .++.. ....++|+.+++++ ++++++|++|+|+|+|+..++.++.
T Consensus 54 ~~~~~v~~a~~~~~~~~~~~y~~~----------~g~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~- 122 (406)
T 1xi9_A 54 QPPEHMKEAYCKAIKEGHNYYGDS----------EGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEALQLIFGALL- 122 (406)
T ss_dssp CCCHHHHHHHHHHHHTTCCSCCCT----------TCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHhcCCCCCCCC----------CCcHHHHHHHHHHHHHhcCCCCCHHHEEEcCChHHHHHHHHHHhC-
Confidence 457889999988886532 22221 11345667777766 4567899999999999999999986
Q ss_pred hhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCC--CCCcChhHHHhhccCCceEEEEeccccccccccC---h
Q psy15216 1477 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---I 1551 (2602)
Q Consensus 1477 ~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~---l 1551 (2602)
++||+|++++++|+++...+.. .|++++.++.++ ++.+|+++|++++++++++|++++|+||||.++| +
T Consensus 123 ---~~gd~Vl~~~~~~~~~~~~~~~---~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l 196 (406)
T 1xi9_A 123 ---DPGDEILVPGPSYPPYTGLVKF---YGGKPVEYRTIEEEDWQPDIDDIRKKITDRTKAIAVINPNNPTGALYDKKTL 196 (406)
T ss_dssp ---CTTCEEEEEESCCHHHHHHHHH---TTCEEEEEEEEGGGTSEECHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHH
T ss_pred ---CCCCEEEEcCCCCccHHHHHHH---cCCEEEEeecCCCcCCcCCHHHHHHhhCcCceEEEEECCCCCCCCCcCHHHH
Confidence 7999999999999998766654 499999998874 4568999999999999999999999999999988 8
Q ss_pred HHHHHHhhhcCCEEEEecccccCcc---cccCCC--CCc-cEEEEccccccCCCc--eEEEE--Eec----CCCCccccc
Q psy15216 1552 LEIGELCRSKGVIFHCDAAQAVGKI---DINIQN--YKV-DLMSFSAHKIYGPKG--IGALY--IRR----NPRTRIEAQ 1617 (2602)
Q Consensus 1552 ~~I~~ia~~~gi~vivD~a~~~g~~---~~~l~~--~~~-D~~v~S~~K~~gp~G--~G~l~--~~~----~~~~~l~~~ 1617 (2602)
++|.++|++||+++|+|++|+.+.. +.++.. .+. +++++|+||.+|++| +|+++ .++ ++++.+...
T Consensus 197 ~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~l~~~l~~~ 276 (406)
T 1xi9_A 197 EEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVYFATGWRLGYMYFVDPENKLSEVREAIDRL 276 (406)
T ss_dssp HHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSSSCEEEEEESTTTTCCGGGCCEEEEEECTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHcCCCceEEEEeccccccCCCccEEEEEEEecCchhHHHHHHHHHHH
Confidence 9999999999999999999976432 111111 345 789999999888888 89999 676 554444332
Q ss_pred cccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEe--
Q psy15216 1618 IHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN-- 1695 (2602)
Q Consensus 1618 ~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~-- 1695 (2602)
.. .. ++++...+.++.++|+....++++.++++.++++++.+.|.+ .+++.+..+.. +....+.++
T Consensus 277 ~~-------~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~---~~~~~~~~~~~ 344 (406)
T 1xi9_A 277 AR-------IR-LCPNTPAQFAAIAGLTGPMDYLKEYMKKLKERRDYIYKRLNE-IPGISTTKPQG---AFYIFPKIEVG 344 (406)
T ss_dssp HH-------HT-CCSCSHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHT-STTEECCCCCB---SSEECCEECSC
T ss_pred HH-------hh-cCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHh-CCCCeeecCCe---eEEEEEecCcc
Confidence 21 11 356666677777777532334678888999999999999987 67887754322 122222444
Q ss_pred -cCCcHHHHHhc---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1696 -FIEGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1696 -~~~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
+.+..++...| +||.+++|..|... ..+++||+++ ++.+++++++++|++.
T Consensus 345 ~~~~~~~l~~~l~~~~gi~v~~g~~f~~~-----------------~~~~lRis~~--~~~~~i~~~~~~l~~~ 399 (406)
T 1xi9_A 345 PWKNDKEFVLDVLHNAHVLFVHGSGFGEY-----------------GAGHFRAVFL--PPIEILEEAMDRFEKF 399 (406)
T ss_dssp SCSSHHHHHHHHHHHHCEECEEGGGGCGG-----------------GTTBEEEECC--SCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCEEEeCchhcCCC-----------------CCCEEEEEec--CCHHHHHHHHHHHHHH
Confidence 23555666544 59999988876421 1278999998 8999999999999873
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-22 Score=264.60 Aligned_cols=315 Identities=12% Similarity=0.111 Sum_probs=232.7
Q ss_pred CCCHHHHHHHHHHHhhh-cCCCCCCCcchhhhHHHHHHH-HHHHHHHH----hC--CCCCcEEEeCCHHHHHHHHHHhcc
Q psy15216 8 PIDPRVVDKMIPYLRVQ-FGNPASRNHIYGWTAEKAIEK-ARNEVAQL----IY--ADPREIIWTSGATESNNLAIKGAA 79 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~-~~~p~~~~~~~~~~~~~~~~~-~r~~lA~~----~g--~~~~~Iv~t~g~T~al~~~~~~l~ 79 (2602)
++|+.+.+++.+.+... ..++. . ..+ +|+.++++ +| +++++|++|+|+++|+++++.++.
T Consensus 41 ~~~~~v~~a~~~~~~~~~~~y~~------~------~~~~lr~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~ 108 (390)
T 1d2f_A 41 ATAPCIIEALNQRLMHGVFGYSR------W------KNDEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWS 108 (390)
T ss_dssp CCCHHHHHHHHHHHTTCCCCCCC------S------CCHHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHSS
T ss_pred CCCHHHHHHHHHHHhCCCCCCCC------C------ChHHHHHHHHHHHHHhcCCCCCHHHEEEcCCHHHHHHHHHHHhc
Confidence 57889999999987531 11111 1 233 55555555 46 677899999999999999999987
Q ss_pred cccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCC---CccChHHHHhhccC-CceEEEEecccCccccccc-
Q psy15216 80 HFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN---GLITLSQLEEKICS-DTILVSVMLVNNEIGVIQP- 154 (2602)
Q Consensus 80 ~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~---~~ld~e~l~~~i~~-~tklv~i~~~~npTG~~~~- 154 (2602)
++||+|+++.|.|+++...+... |++++.++.+++ +.+|+++|++++++ ++++|++++|+||||.++|
T Consensus 109 ----~~gd~vl~~~p~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~l~~p~nptG~~~~~ 181 (390)
T 1d2f_A 109 ----ETGEGVVIHTPAYDAFYKAIEGN---QRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTC 181 (390)
T ss_dssp ----CTTCEEEEEESCCHHHHHHHHHT---TCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEESSCTTTCCCCCT
T ss_pred ----CCCCEEEEcCCCcHHHHHHHHHC---CCEEEEeecccCCCccccCHHHHHHHhccCCCeEEEEeCCCCCCCcCcCH
Confidence 79999999999999987766544 999999987643 35899999999986 8999999999999999998
Q ss_pred --HHHHHHHHHhcCCEEEEeccccccc----ccccCCCCC---ccEEEeccccccCCCC--cEEEEEe-cCCCCccccee
Q psy15216 155 --ILEIGELCRSKGVIFHCDAAQAVGK----IDINIQNYK---VDLMSFSAHKIYGPKG--IGALYIR-RNPRTRIEAQI 222 (2602)
Q Consensus 155 --l~~I~~la~~~g~~livD~a~a~g~----~~~dl~~~~---~D~~~~S~~K~~Gp~G--~G~l~~~-~~~~~~l~~~~ 222 (2602)
+++|+++|++||+++|+|++|+... .+.++..+. .|. +.|+||.+|++| +||++++ +++++.+.+..
T Consensus 182 ~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~-~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~ 260 (390)
T 1d2f_A 182 DELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVARGDWAL-LTSGSKSFNIPALTGAYGIIENSSSRDAYLSAL 260 (390)
T ss_dssp THHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCCSSEEE-EECSHHHHTCGGGCCEEEEECSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCEEEEEccccccccCCCCCcCHHHcchhhHhh-ccCccHhhcccChhheEEEECCHHHHHHHHHHH
Confidence 7889999999999999999998632 222332222 266 899999888777 6999986 55555554432
Q ss_pred cCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc--
Q psy15216 223 HGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-- 300 (2602)
Q Consensus 223 ~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~-- 300 (2602)
.+ ....++++.++..++.++++....++++.++++.++++++.+.|.+.+|++.+..+.. +....+.++.
T Consensus 261 ~~-----~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~---~~~~~~~~~~~~ 332 (390)
T 1d2f_A 261 KG-----RDGLSSPSVLALTAHIAAYQQGAPWLDALRIYLKDNLTYIADKMNAAFPELNWQIPQS---TYLAWLDLRPLN 332 (390)
T ss_dssp HT-----TSCCCSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCCCCSB---CSEEEEECGGGC
T ss_pred hh-----hcccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEecCCc---cEEEEEEccccC
Confidence 10 1123467777777777778744456788888999999999999976456776554322 2233455554
Q ss_pred cChhHHHHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 301 IEGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 301 ~~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
.+..++...| +||.+++|..|.+. ..+++||+++. ++++++.+++.|++.
T Consensus 333 ~~~~~l~~~l~~~~gi~v~~g~~f~~~-----------------~~~~~Ris~~~--~~~~l~~~l~~l~~~ 385 (390)
T 1d2f_A 333 IDDNALQKALIEQEKVAIMPGYTYGEE-----------------GRGFVRLNAGC--PRSKLEKGVAGLINA 385 (390)
T ss_dssp CCHHHHHHHHHHTTCEECEEGGGGCGG-----------------GTTEEEEECCS--CHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCEEeeCccccCCC-----------------CCCeEEEEecC--CHHHHHHHHHHHHHH
Confidence 3566676665 59999998877421 13789999985 578999999998863
|
| >3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-23 Score=272.10 Aligned_cols=329 Identities=16% Similarity=0.140 Sum_probs=230.2
Q ss_pred CHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCEE
Q psy15216 10 DPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHI 89 (2602)
Q Consensus 10 p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~V 89 (2602)
++.+.+++.+.+...+.. ..+..+++|+.+++++|.+ ++++++|+|+|+++++.++. +++||+|
T Consensus 16 ~~~~~~a~~~~~~~~~~~-----------~~~~~~~l~~~la~~~~~~--~~i~~~sgt~al~~~l~~l~---~~~gd~V 79 (373)
T 3frk_A 16 EYEIKFKFEEIYKRNWFI-----------LGDEDKKFEQEFADYCNVN--YCIGCGNGLDALHLILKGYD---IGFGDEV 79 (373)
T ss_dssp HHHHHHHHHHHHHHTCCS-----------SSHHHHHHHHHHHHHHTSS--EEEEESCHHHHHHHHHHHTT---CCTTCEE
T ss_pred CHHHHHHHHHHHHCCCcc-----------CCchHHHHHHHHHHHhCCC--eEEEeCCHHHHHHHHHHHcC---CCCcCEE
Confidence 456677777776653211 1246789999999999975 89999999999999999983 3799999
Q ss_pred EEcCCCCcccHHHHHHHHhCCcEEEEeccC-CCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHhcCCE
Q psy15216 90 ITVQTEHKSVLDSIRKLENDGFRVTYLKPK-NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVI 168 (2602)
Q Consensus 90 lv~~~~~~s~~~~~~~~~~~G~~v~~v~~~-~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~~g~~ 168 (2602)
+++.++|+++...+... |+++++++.+ +++.+|++++++++++++++|+ ++||||.+.|+++|.++|++||++
T Consensus 80 i~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~---~~n~~G~~~~l~~i~~l~~~~~~~ 153 (373)
T 3frk_A 80 IVPSNTFIATALAVSYT---GAKPIFVEPDIRTYNIDPSLIESAITEKTKAII---AVHLYGQPADMDEIKRIAKKYNLK 153 (373)
T ss_dssp EEETTSCTHHHHHHHHH---SCEEEEECEETTTTEECGGGTGGGCCTTEEEEE---EECCTTCCCCHHHHHHHHHHHTCE
T ss_pred EECCCCcHHHHHHHHHc---CCEEEEEeccccccCcCHHHHHHhcCCCCeEEE---EECCCcCcccHHHHHHHHHHcCCE
Confidence 99999999988887666 9999999987 4678999999999999999888 677899999999999999999999
Q ss_pred EEEecccccccccccCCCCC--ccEEEeccc--cccCCCC-cEEEEEecC-CCCcccceecCCCcccc--ccccCcchhH
Q psy15216 169 FHCDAAQAVGKIDINIQNYK--VDLMSFSAH--KIYGPKG-IGALYIRRN-PRTRIEAQIHGGGHEYG--LRSGTLATHQ 240 (2602)
Q Consensus 169 livD~a~a~g~~~~dl~~~~--~D~~~~S~~--K~~Gp~G-~G~l~~~~~-~~~~l~~~~~g~~~~~~--~~~gt~~~~~ 240 (2602)
+|+|++|+.|.. ++...++ .|++++|+| |.+|+.| .|+++.+++ +.+.+.+...++..... ...|.. + .
T Consensus 154 li~D~a~~~g~~-~~~~~~~~~~d~~~~S~~~~K~l~~~g~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~-~-~ 230 (373)
T 3frk_A 154 LIEDAAQAHGSL-YKGMKVGSLGDAAGFSFYPAKNLGSLGDGGAVVTNDKDLAEKIKALSNYGSEKKYHHIYKGFN-S-R 230 (373)
T ss_dssp EEEECTTCTTCE-ETTEETTSSSSEEEEECCTTSSSCCSSSCEEEEESCHHHHHHHHHHHBTTCSBTTBCCSCCCB-C-C
T ss_pred EEEECCcccCCE-ECCEeccccccEEEEeCcCCCccCccceeEEEEeCCHHHHHHHHHHHhcCcccCCcccccccc-C-C
Confidence 999999998775 4544445 789999966 9777744 577777643 44555554433322110 111111 0 1
Q ss_pred HHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcccChhHHHHHh--CCeEEcc
Q psy15216 241 IVGMGEAFRL-ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDIAVSS 317 (2602)
Q Consensus 241 ~~al~~al~~-~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~v~~ 317 (2602)
+..+.+++.. ....+++..++.+++++++.+.|.+ ++ +.+...+....+....+.+...+...+.+.| +||.+++
T Consensus 231 ~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~ 308 (373)
T 3frk_A 231 LDELQAGFLRVKLKYLDKWNEERRKIAQKYIAGINN-PN-VIIPVEADYAKHVWYTFVIRSEKRDELQKYLNNNGIGTLI 308 (373)
T ss_dssp CCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCCC-TT-EECCCCCTTEECCCSSEEEEESSHHHHHHHHHHTTBCCBC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-Cc-eEeccCCCCCceeeEEEEEEeCCHHHHHHHHHHCCCCccc
Confidence 1222333332 2245678888999999999999977 55 6654332221122222333334677777777 7999986
Q ss_pred cccCCCCCCChHHHHHHcCCC-------ccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 318 GSACTSASLEPSYVLRALGCN-------DELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 318 g~~~~~~~~~~~~~~~~~g~~-------~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
+..+.. +.++.+ ..++.. +....+.||++++.++|++||++++++|++
T Consensus 309 ~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~~~~~l~~ 363 (373)
T 3frk_A 309 HYPIPI-HLQQAY--KDLGFKTGNFPIAEKIANEILSIPIWYGMKNEEIEYVIDKINA 363 (373)
T ss_dssp SCSSCG-GGSGGG--GGGCCCTTSSHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHT
T ss_pred CcCCcc-ccChHH--HhcCCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHH
Confidence 642111 111111 223321 112236899999999999999999999996
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=5.5e-23 Score=269.71 Aligned_cols=320 Identities=13% Similarity=0.074 Sum_probs=236.2
Q ss_pred CCCCCC-CCCHHHHHHHHHHHhhhc-CCCCCCCcchhhhHHHHHHHHHHHHHHHhC------CCCCcEEEeCCHHHHHHH
Q psy15216 2 DYSATT-PIDPRVVDKMIPYLRVQF-GNPASRNHIYGWTAEKAIEKARNEVAQLIY------ADPREIIWTSGATESNNL 73 (2602)
Q Consensus 2 d~a~~~-~~p~~v~~a~~~~l~~~~-~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g------~~~~~Iv~t~g~T~al~~ 73 (2602)
+.+... ++|+.+.+++ +.+.... .++. . ....++|+.++++++ +++++|++|+|+|+|+++
T Consensus 49 ~~~~~~~~~~~~v~~a~-~~l~~~~~~y~~------~----~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~t~a~~~ 117 (409)
T 2gb3_A 49 NIGQPDLKTPEVFFERI-YENKPEVVYYSH------S----AGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILF 117 (409)
T ss_dssp SSCCCCSCCCTHHHHHH-HHTCCSSCCCCC------T----TCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHH-HHHhcCCCCCCC------C----CCcHHHHHHHHHHHHHHhCCCCCHHHEEEeCCHHHHHHH
Confidence 334444 4678889999 7775311 1111 1 123456666666663 466789999999999999
Q ss_pred HHHhcccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCC--CCccChHHHHhhccCCceEEEEecccCcccc
Q psy15216 74 AIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGV 151 (2602)
Q Consensus 74 ~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~ld~e~l~~~i~~~tklv~i~~~~npTG~ 151 (2602)
++.++. ++||+|+++.++|+++...+... |++++.++.++ ++.+ +++|++++++++++|++++|+||||.
T Consensus 118 ~~~~~~----~~gd~Vl~~~~~~~~~~~~~~~~---g~~~~~v~~~~~~~~~~-~~~l~~~l~~~~~~v~~~~p~nptG~ 189 (409)
T 2gb3_A 118 SFAVIA----NPGDEILVLEPFYANYNAFAKIA---GVKLIPVTRRMEEGFAI-PQNLESFINERTKGIVLSNPCNPTGV 189 (409)
T ss_dssp HHHHHC----CTTCEEEEEESCCTHHHHHHHHH---TCEEEEEECCGGGTSCC-CTTGGGGCCTTEEEEEEESSCTTTCC
T ss_pred HHHHhC----CCCCEEEEcCCCchhHHHHHHHc---CCEEEEeccCCCCCCcc-HHHHHHhhCcCCeEEEECCCCCCCCC
Confidence 999987 79999999999999988877666 99999999875 3445 89999999989999999999999999
Q ss_pred ccc---HHHHHHHHHhcCCEEEEecccccccc---ccc-CCC-CCccEEEeccccccCCCC--cEEEEEec-CCCCcccc
Q psy15216 152 IQP---ILEIGELCRSKGVIFHCDAAQAVGKI---DIN-IQN-YKVDLMSFSAHKIYGPKG--IGALYIRR-NPRTRIEA 220 (2602)
Q Consensus 152 ~~~---l~~I~~la~~~g~~livD~a~a~g~~---~~d-l~~-~~~D~~~~S~~K~~Gp~G--~G~l~~~~-~~~~~l~~ 220 (2602)
++| +++|.++|++||+++|+|++|+.+.. +.. +.. .+.|++++|+||.+|++| +||+++++ ++++.+.+
T Consensus 190 ~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~l~~~l~~ 269 (409)
T 2gb3_A 190 VYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSIESDKVVVIDSVSKKFSACGARVGCLITRNEELISHAMK 269 (409)
T ss_dssp CCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCCTTEEEEEESTTTTTCGGGCCEEEECSCHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHcCCEEEEECcccccccCCCCCCccccCCCCEEEEecchhccCCccceEEEEEECcHHHHHHHHH
Confidence 986 78899999999999999999976532 122 222 256899999999989888 89999988 77666654
Q ss_pred eecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEE-eCCCCCCCCceEEEEEc
Q psy15216 221 QIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYI-NGDMNNRIPHNLNISFN 299 (2602)
Q Consensus 221 ~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l-~~~~~~~~~~~~~~~~~ 299 (2602)
.... + . +++.+...++.++|+....++++..+++.++++++.+.|.+ . ++.+ ..+.. +...++.++
T Consensus 270 ~~~~------~-~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~---~~~~~~~~~ 336 (409)
T 2gb3_A 270 LAQG------R-L-APPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEE-H-GLKRFTKPSG---AFYITAELP 336 (409)
T ss_dssp HHHH------S-C-CCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHH-T-TCCCBCCCSB---SSEEEEECS
T ss_pred HHhc------c-C-CCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH-c-CceeeeCCCe---eEEEEEEeC
Confidence 3311 1 1 56666666676777533456778888999999999999987 3 6665 43322 233344444
Q ss_pred ccChhHHHHHh--C------CeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 300 FIEGESLLMAI--K------DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 300 ~~~~~~~~~~L--~------gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
..+..++...| + ||.+++|..|... .....+++||+++ ++++++++++++|++.
T Consensus 337 ~~~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~--------------~~~~~~~iRis~~--~~~e~i~~~~~~l~~~ 398 (409)
T 2gb3_A 337 VEDAEEFARWMLTDFNMDGETTMVAPLRGFYLT--------------PGLGKKEIRIACV--LEKDLLSRAIDVLMEG 398 (409)
T ss_dssp SSCHHHHHHHHHHSCCBTTEEEECEEGGGGCSS--------------TTTTSSEEEEECC--SCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhccccccCcEEEeCchHhCCC--------------CCCCCCEEEEEeC--CCHHHHHHHHHHHHHH
Confidence 44566777666 5 8999988776431 0112479999998 7999999999999864
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-22 Score=267.46 Aligned_cols=313 Identities=16% Similarity=0.106 Sum_probs=238.4
Q ss_pred CCCCHHHHHHHHHHHhhcc--CCCCCccchhHHHHHHHHHHHHHHHHHHhC-----CCCCcEEEeCCHHHHHHHHHHhhh
Q psy15216 1403 TPIDPRVVDKMIPYLRVQF--GNPASRNHIYGWTAEKAIEKARNEVAQLIY-----ADPREIIWTSGATESNNLAIKGAA 1475 (2602)
Q Consensus 1403 ~~~~~~v~eal~~~l~~~~--~np~~~~~~~~~~~~~~~~~lr~~ia~~~g-----~~~~~iv~t~gaT~al~~al~~l~ 1475 (2602)
.++++.+.+++.+.+.... .++.. ....++|++++++++ +++++|++|+|+|+|+.+++.++.
T Consensus 70 ~~~~~~v~~a~~~~~~~~~~~~y~~~----------~g~~~lr~~la~~~~~~~~~~~~~~v~~t~g~t~al~~~~~~l~ 139 (427)
T 3dyd_A 70 LPTDPEVTQAMKDALDSGKYNGYAPS----------IGFLSSREEIASYYHCPEAPLEAKDVILTSGCSQAIDLCLAVLA 139 (427)
T ss_dssp SCCCHHHHHHHHHHHHHCCSSSCCCT----------TCCHHHHHHHHHHHCBTTBCCCGGGEEEESSHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHhcCcCCCCCCC----------CCcHHHHHHHHHHHhhcCCCCChHHEEEecCcHHHHHHHHHHhc
Confidence 4678899999999887632 22211 125688999999998 778899999999999999999987
Q ss_pred hhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCC--CCCcChhHHHhhccCCceEEEEeccccccccccC---
Q psy15216 1476 HFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP--- 1550 (2602)
Q Consensus 1476 ~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~--- 1550 (2602)
++||+|+++.|+|+++...+..+ |++++.++.++ ++.+|++++++++++++++|++++|+||||.++|
T Consensus 140 ----~~gd~vl~~~p~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~ 212 (427)
T 3dyd_A 140 ----NPGQNILVPRPGFSLYKTLAESM---GIEVKLYNLLPEKSWEIDLKQLEYLIDEKTACLIVNNPSNPCGSVFSKRH 212 (427)
T ss_dssp ----CTTCEEEEEESCCTHHHHHHHHT---TCEEEEEEEEGGGTTEECHHHHHSSCCTTEEEEEEESSCTTTCCCCCHHH
T ss_pred ----CCCCEEEEcCCCchhHHHHHHHc---CCEEEEEecccccCCCCCHHHHHHHhccCCCEEEEECCCCCCCCCCCHHH
Confidence 79999999999999987666555 99999998764 5678999999999999999999999999999999
Q ss_pred hHHHHHHhhhcCCEEEEeccccc----CcccccCCCCCc---cEEEEccccccCCCc--eEEEEEecCC-------CCcc
Q psy15216 1551 ILEIGELCRSKGVIFHCDAAQAV----GKIDINIQNYKV---DLMSFSAHKIYGPKG--IGALYIRRNP-------RTRI 1614 (2602)
Q Consensus 1551 l~~I~~ia~~~gi~vivD~a~~~----g~~~~~l~~~~~---D~~v~S~~K~~gp~G--~G~l~~~~~~-------~~~l 1614 (2602)
+++|+++|++||+++|+|++|+. +....++..++. .+++.|+||.+|++| +|+++++++. .+.+
T Consensus 213 l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~~~~~~vi~~~S~sK~~~~~G~riG~~~~~~~~~~~~~~i~~~l 292 (427)
T 3dyd_A 213 LQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLSTDVPILSCGGLAKRWLVPGWRLGWILIHDRRDIFGNEIRDGL 292 (427)
T ss_dssp HHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGGCSSCCEEEEEESTTTSSCGGGCCEEEEEECSTTSSHHHHHHHH
T ss_pred HHHHHHHHHHCCCEEEEEcCchhhccCCCcCccHHHhCCCCcEEEEeeccccCCCcCcceEEEEecCcchhhHHHHHHHH
Confidence 99999999999999999999875 222222222222 366779999888777 8999998642 1112
Q ss_pred ccccccCCccccCCCCCcchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEE
Q psy15216 1615 EAQIHGGGHEYGLRSGTLATHQIVGMGEAFRL-ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNIS 1693 (2602)
Q Consensus 1615 ~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~-~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~ 1693 (2602)
.... ....+++...+.++.++|+. ...++++..+++.++++++++.|.+ +|++.+..+... ....+.
T Consensus 293 ~~~~--------~~~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~p~~g---~~~~~~ 360 (427)
T 3dyd_A 293 VKLS--------QRILGPCTIVQGALKSILCRTPGEFYHNTLSFLKSNADLCYGALAA-IPGLRPVRPSGA---MYLMVG 360 (427)
T ss_dssp HHHH--------HHHCCSCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH-STTEEEECCSBT---TEEEEE
T ss_pred HHHH--------hccCCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhc-CCCceecCCCee---EEEEEe
Confidence 1111 01246777777777777773 3456788889999999999999988 789887644322 233344
Q ss_pred Eec------CCcHHHHHhc---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1694 FNF------IEGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1694 ~~~------~~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
++. .+..++...| +||.+.+|..|..+ +++||+++ ++.+++++++++|++
T Consensus 361 l~~~~~~~~~~~~~~~~~l~~~~gV~v~~g~~~~~~-------------------~~iRis~~--~~~e~i~~~l~~l~~ 419 (427)
T 3dyd_A 361 IEMEHFPEFENDVEFTERLVAEQSVHCLPATCFEYP-------------------NFIRVVIT--VPEVMMLEACSRIQE 419 (427)
T ss_dssp ECGGGCTTCSSHHHHHHHHHHHHCEECEEGGGGTCT-------------------TEEEEESC--SCHHHHHHHHHHHHH
T ss_pred cCHhhcCCCCCHHHHHHHHHHHCCEEEECCcccCCC-------------------CeEEEEEC--CCHHHHHHHHHHHHH
Confidence 441 2345555544 69999999877543 89999987 689999999999987
Q ss_pred h
Q psy15216 1765 K 1765 (2602)
Q Consensus 1765 ~ 1765 (2602)
.
T Consensus 420 ~ 420 (427)
T 3dyd_A 420 F 420 (427)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.5e-24 Score=275.92 Aligned_cols=314 Identities=14% Similarity=0.133 Sum_probs=210.0
Q ss_pred CceEEEEEcCcccEEEEEEECCeeEEEeCCCCCccccEEEEEecCCcEEEcHHHHhhhccCCCCchhhhhhhhCCCCCCC
Q psy15216 636 KCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNI 715 (2602)
Q Consensus 636 ~~~vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~v~~~~~~~~~vG~~A~~~~~~~p~~~~~~~K~~lg~~~~~~ 715 (2602)
+..++|||+|||++++++++++++.+ +..|...+||.+. +.....++..++..+|+++++. ..
T Consensus 12 ~~~~vgiDiGt~~i~~~~~~~~~~~i--~~~g~~~~ps~~~-------------~~g~i~d~~~~~~~ik~~~~~~--~~ 74 (377)
T 2ych_A 12 RVEALGLEIGASALKLVEVSGNPPAL--KALASRPTPPGLL-------------MEGMVAEPAALAQEIKELLLEA--RT 74 (377)
T ss_dssp CCCCEEEEECSSEEEEEEEETTTTEE--EEEEEEECCTTSE-------------ETTEESCHHHHHHHHHHHHHHH--TC
T ss_pred CCceEEEEeCCCeEEEEEEeCCceEE--EEEEeEECCCCcc-------------cCCCcCCHHHHHHHHHHHHHHc--CC
Confidence 34679999999999999988777655 2345556666431 2223456777888899988762 11
Q ss_pred CCCCCCeeeecCCCceEEEEeCceeCHHHHHHHHHHHHHHHHHHhhcCccceEEEEEcCCCCHHH---------------
Q psy15216 716 NTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQ--------------- 780 (2602)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~q--------------- 780 (2602)
........+.+.. ..........++++++... ++..++++++.++.++||++| +.+.+
T Consensus 75 ~~~~v~~~i~~~~-~~~~~~~~~~v~~~el~~~----i~~ea~~~~~~~~~~~vid~~--~~~~~~~~~~~~~~~v~~va 147 (377)
T 2ych_A 75 RKRYVVTALSNLA-VILRPIQVPKMPLKEMEEA----VRWEAERYIPFPIDEVVLDFA--PLTPLSEVQEGEQVQVMVAA 147 (377)
T ss_dssp CCCEEEEEECGGG-CEEEEEEEECCCHHHHHHH----HHHHHGGGCSSCC-CEEEEEE--ESSCGGGSCTTSEEEEEEEE
T ss_pred CcceEEEEecCCc-EEEEEEECCCCCHHHHHHH----HHHHHhhcCCCChhHceEEEE--EeCCCCCCCCcceeEEEEEE
Confidence 1111111111100 0011111245788887654 355788899999999999998 33333
Q ss_pred -----HHHHHHHHHHcCCceEEEechhHHHHHHhhhcc-CcccceEEEEEeCCceEEEEEEEEECCEEEEEEEecCCCCc
Q psy15216 781 -----RQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDK-NIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLG 854 (2602)
Q Consensus 781 -----r~~~~~Aa~~AGl~~~~li~EPtAAAl~y~~~~-~~~~~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lG 854 (2602)
.+++++|++.||+++..++.||+|||++|+... ...+..++|+|+||||||+++++ .+.+. ..++..+|
T Consensus 148 ~~~~~v~~~~~~~~~aGl~~~~i~~ep~Aaa~~~~~~~~~~~~~~~~vvDiGggttdi~i~~--~g~~~---~~~~~~~G 222 (377)
T 2ych_A 148 ARQEAVAGVLEALRGAGLVPVVLDVKPFAGLYPLEARLAEEPDRVFLVLDIGAESTSLVLLR--GDKPL---AVRVLTLS 222 (377)
T ss_dssp EEHHHHHHHHHHHHHTTCEEEEEEEHHHHTTGGGHHHHHTSTTCEEEEEEECSSCEEEEEEE--TTEEE---EEEEESCS
T ss_pred ecHHHHHHHHHHHHHCCCceEEEecchHHHHHHHHhhcccccCCeEEEEEECCCcEEEEEEE--CCEEE---EEEeeech
Confidence 389999999999999999999999999986543 22456799999999999999987 34332 24557999
Q ss_pred chHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHcccccceEE----EEEecCCceEEEEeCHHHHHHHHHHHHH
Q psy15216 855 GDDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKL----NVKLSDKKIVNITIDMKQFFTITQHLVN 930 (2602)
Q Consensus 855 G~~~D~~l~~~l~~~~~~~~~~~~~~~~l~~~~e~~K~~LS~~~~~~~----~i~~~~~~~~~~~itr~~fe~l~~~~~~ 930 (2602)
|.+||+.|.+.+ . .+ ...||++|+.++....... .+++. ....+++|++|++++++.++
T Consensus 223 G~~i~~~i~~~~----~---~~-------~~~aE~~K~~~~~~~~~~~~~~~~i~~~---~~~~~i~~~~~~~~i~~~~~ 285 (377)
T 2ych_A 223 GKDFTEAIARSF----N---LD-------LLAAEEVKRTYGMATLPTEDEELLLDFD---AERERYSPGRIYDAIRPVLV 285 (377)
T ss_dssp HHHHHHHHHHHT----T---CC-------HHHHHHHHHHTC----------------------------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHh----C---CC-------HHHHHHHHhhcccccccccccccccccc---cccccCCHHHHHHHHHHHHH
Confidence 999999988732 1 11 4689999999876432211 11111 13457899999999999999
Q ss_pred HHHHHHHHHHHHc--CCCccccceEEEecCccchHHHHHHHHhhccCcccCc--------------------CCcchHhH
Q psy15216 931 RTILLSSKALMDA--NLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTS--------------------IDPDKAVV 988 (2602)
Q Consensus 931 ~~~~~i~~~l~~a--~~~~~~i~~V~LvGG~sr~P~v~~~l~~~f~~~~~~~--------------------~~p~~aVa 988 (2602)
++...|++.|+.. +.....++.|+|+||+|++|.+++.+++.|+.++... .+|..++|
T Consensus 286 ~i~~~i~~~l~~~~~~~~~~~~~~IvL~GG~s~~p~l~~~l~~~l~~~v~~~~P~~~v~~~~~~~~~~~l~~~~p~~a~a 365 (377)
T 2ych_A 286 ELTQELRRSLEFFRIQLEEASPEVGYLLGGGSKLRGLASLLTDTLGVNLEPVNPWEAVAVDPKRFESEQLQEIGPEFAVA 365 (377)
T ss_dssp HHHHHHHHHHHHHHHHC---CCSEEEEESGGGGSTTHHHHHHHHHTSEEEECCGGGGSBCCTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCCcCEEEEECccccchhHHHHHHHHhCCCeEecCchhhcccCcccCCHHHHHhhhHHHHHH
Confidence 9999999999863 5566789999999999999999999999998654432 13445677
Q ss_pred HHHHHHh
Q psy15216 989 FGAAIQA 995 (2602)
Q Consensus 989 ~GAa~~a 995 (2602)
.|+|+++
T Consensus 366 ~Glal~~ 372 (377)
T 2ych_A 366 LGLALRG 372 (377)
T ss_dssp HHHHHHH
T ss_pred HHHHHcC
Confidence 7888766
|
| >2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.5e-24 Score=271.89 Aligned_cols=299 Identities=20% Similarity=0.173 Sum_probs=202.4
Q ss_pred cceEEEEEcCcccEEEEEEECCeEEEEeCCCCCccccEEEEEecCCcEEecHHHHhhhcc-CCCCch-hhhhhhcCCCCC
Q psy15216 2032 KCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNI-DPKNTI-SSIKRFIARDLK 2109 (2602)
Q Consensus 2032 ~~~vvGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~~~~~~vG~~A~~~~~~-~p~~~~-~~~K~~lg~~~~ 2109 (2602)
+++++|||+||+|+.+++ ..|. ....||+|+...+....+|.. ..... ++..+. ..-...+|....
T Consensus 20 ~m~~igiDlG~~~tkv~~-~~g~---------~~~~PSvva~~~~~~~~~~~~--~~v~~~~g~~~~~~~~~~~vG~~A~ 87 (346)
T 2fsj_A 20 HMVVVGLDVGYGDTKVIG-VDGK---------RIIFPSRWAVTETESWGIGGK--IPVLSTDGGQTKFIYGKYASGNNIR 87 (346)
T ss_dssp -CEEEEEEECSSEEEEEC-GGGC---------EEEEESCEEEECCSCC----C--CCCBBSSTTSSEEEEGGGCCSSCCB
T ss_pred eeEEEEEecCCcceeEEe-cCCC---------EEEecceeeeccccccCcCcc--eEEEEecccccccCCcEEEEcccee
Confidence 347899999999999874 2221 124799998865432112210 00000 000000 012223343221
Q ss_pred CCCCCCCCeeeecCCCceEEEecCceeCHHHHHHHHHHHHHHHHHHhhccccceEE--EeeCCCCCHHHHHHHHHHHHHc
Q psy15216 2110 NINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAV--ITVPAYFNDIQRQFTKNAAKLA 2187 (2602)
Q Consensus 2110 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~V--iTVPa~f~~~qr~~l~~Aa~~A 2187 (2602)
.| ...+.+++++..++++..|++.++...+.+ .++| |+||++|+..||+++++++..+
T Consensus 88 ------~~-------------l~~~~~~~~~~~~ll~~~l~~~~~~~~~~~-~~vvL~i~vP~~~~~~er~a~~~~~~~~ 147 (346)
T 2fsj_A 88 ------VP-------------QGDGRLASKEAFPLIAAALWESGIHNDGSP-VDLVIGSGTPLGTFDLEVKAAKEALENK 147 (346)
T ss_dssp ------CC-------------SSTTCTTSTTTHHHHHHHHHHHCCCC---C-EEEEEEEEECGGGHHHHHHHHHHHHTTE
T ss_pred ------cc-------------cCCCcccChhHHHHHHHHHHHhhhccCCCc-eEEEEcccCCHHHHHHHHHHHHHHHcCC
Confidence 11 122344567777888888877653333333 5799 9999999999999999998775
Q ss_pred --------C------CceeEeechhHHHHHHhhhcc---CCCCceEEEEEeCCceEEEEEEEEeCCEEEEEEEecCCCCc
Q psy15216 2188 --------G------LNVLRLLNEPTSAAIAYKLDK---NIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLG 2250 (2602)
Q Consensus 2188 --------G------l~~~~li~EP~AAAl~y~~~~---~~~~~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lG 2250 (2602)
| ++.+++++||+|||++| +.. ..++++++|+|+||||||++++++.++. .+.++.++..+|
T Consensus 148 ~~~v~~~~G~~~~i~v~~v~li~Ep~AAa~~~-l~~~~~~~~~~~vlVvDIGgGTtDv~vi~~~~g~-~v~~~s~~~~lG 225 (346)
T 2fsj_A 148 VLTVTGPEGEVRQFNITRLIMRPQGVGAALYL-LNQGIIEQQPGYGVVIDVGSRTTDVLTINLMDME-PVVELSFSLQIG 225 (346)
T ss_dssp EEEEECGGGCEEEEEEEEEEEEETTHHHHHHH-HHHTSSCCCSSEEEEEEECSSCEEEEEEETTTTE-ECGGGCEEESCC
T ss_pred CcEEEeCCCceEEEEEEEEEEEccHHHHHHHh-hccccccccCCcEEEEECCCCcEEEEEEEecCCE-EEeecCCCcchh
Confidence 4 35689999999999988 322 2234789999999999999999987776 566656778999
Q ss_pred hhHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhcccceEEEEEEecCCceEEEEcCHHHH-HHHHHHHHHHHH
Q psy15216 2251 GDDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITIDMKQF-FTITQHLVNRTI 2329 (2602)
Q Consensus 2251 G~~~D~~l~~~l~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~itr~~f-e~l~~~~~~~~~ 2329 (2602)
|.+|++.|.+++.+++.... ... ...+| ... . +.+. +. .++++++ +++++++++++.
T Consensus 226 g~~i~~~I~~~i~~~~g~~~-~i~-----~~~~e-------~~~--~--~~~~-g~----~~~~~~i~~~~i~~~~~~i~ 283 (346)
T 2fsj_A 226 VGDAISALSRKIAKETGFVV-PFD-----LAQEA-------LSH--P--VMFR-QK----QVGGPEVSGPILEDLANRII 283 (346)
T ss_dssp HHHHHHHHHHHHHHHHCCCC-CHH-----HHHHH-------TTS--C--EEET-TE----EECSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCc-CCC-----HHHHh-------cCC--e--EeEC-Cc----cCCHHHHHHHHHHHHHHHHH
Confidence 99999999999887642100 111 11122 111 1 2222 22 3558999 999999999999
Q ss_pred HHHHHHHHHcCCCccccceEEEEeCccchHHHHHHHHhhcCCcccC---CCCccchhhhHHHHHhH
Q psy15216 2330 LLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLT---SIDPDKAVVFGAAIQAN 2392 (2602)
Q Consensus 2330 ~~i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~~~---~~~p~~aVa~GAa~~a~ 2392 (2602)
+.+++.|+++ .++++.|+|+||+|++ +++.+++.|+.. .. ..||++|+|+|+..++.
T Consensus 284 ~~i~~~l~~~---~~~i~~IvL~GGga~l--l~~~l~~~~~~~-~i~~~~~~P~~ava~G~~~~~~ 343 (346)
T 2fsj_A 284 ENIRLNLRGE---VDRVTSLIPVGGGSNL--IGDRFEEIAPGT-LVKIKPEDLQFANALGYRDAAE 343 (346)
T ss_dssp HHHHHHHGGG---GGGEEEEEEESTTHHH--HGGGGGGGSTTC-BCCCCTTTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHhh---hhcccEEEEECCcHHH--HHHHHHHHCcCc-EEeccCCCcHHHHHHHHHHHHh
Confidence 9999999876 5578999999999999 999999999743 34 67999999999998763
|
| >3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.90 E-value=7.6e-23 Score=267.82 Aligned_cols=317 Identities=16% Similarity=0.146 Sum_probs=236.5
Q ss_pred CCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCE
Q psy15216 9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKH 88 (2602)
Q Consensus 9 ~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~ 88 (2602)
.++.+.+++.+.+... .++.. .+.+.+...+..+++++++++++|.+ + .++++++++|+..++.++. ++||.
T Consensus 58 ~~~~v~~a~~~~~~~~-~~~~~-~~~~~~g~~~~~~~l~~~la~~~~~~-~-~i~~~sGt~a~~~~l~~~~----~~gd~ 129 (399)
T 3tqx_A 58 DHPALIKTAQTVVEQY-GFGMA-SVRFICGTQTIHKELEKDISEFLGTD-D-TILYSSCFDANGGLFETLL----GPEDA 129 (399)
T ss_dssp TCHHHHHHHHHHHHHH-CSCCC-SCCCCCCCBHHHHHHHHHHHHHHTCS-E-EEEESCHHHHHHTTHHHHC----CTTCE
T ss_pred CCHHHHHHHHHHHHHh-CCCCC-CcCccccCchHHHHHHHHHHHHHCCC-c-EEEECchHHHHHHHHHHhc----CCCCE
Confidence 4789999999988763 22221 11222223456789999999999975 3 4455566889999998887 89999
Q ss_pred EEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccC------CceEEEEecccCcccccccHHHHHHHH
Q psy15216 89 IITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS------DTILVSVMLVNNEIGVIQPILEIGELC 162 (2602)
Q Consensus 89 Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~------~tklv~i~~~~npTG~~~~l~~I~~la 162 (2602)
|+++.+.|+++...+.. .|++++.++. +|++++++++++ ++++|++++++||||.++|+++|.++|
T Consensus 130 v~~~~~~~~~~~~~~~~---~g~~~~~~~~-----~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~ 201 (399)
T 3tqx_A 130 IISDELNHASIIDGIRL---CKAQRYRYKN-----NAMGDLEAKLKEADEKGARFKLIATDGVFSMDGIIADLKSICDLA 201 (399)
T ss_dssp EEEETTCCHHHHHHHHS---CCSEEEEECT-----TCTTHHHHHHHHHHTTTCSSEEEEEESEETTTTEECCHHHHHHHH
T ss_pred EEECCcccHHHHHHHHH---cCCceeEeCC-----CCHHHHHHHHHhhhccCCCceEEEEeCCCCCCCCcCCHHHHHHHH
Confidence 99999999998776554 4999999875 478889888875 899999999999999999999999999
Q ss_pred HhcCCEEEEecccccccccc------cCCC--CCccEEEeccccccC-CCCcEEEEEecCCCCcccceecCCCccccccc
Q psy15216 163 RSKGVIFHCDAAQAVGKIDI------NIQN--YKVDLMSFSAHKIYG-PKGIGALYIRRNPRTRIEAQIHGGGHEYGLRS 233 (2602)
Q Consensus 163 ~~~g~~livD~a~a~g~~~~------dl~~--~~~D~~~~S~~K~~G-p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~ 233 (2602)
++||+++|+|++|+.+.... .... .++|++++|+||++| ++| ||++.++++++.+...... ....
T Consensus 202 ~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g-G~~~~~~~~~~~~~~~~~~-----~~~~ 275 (399)
T 3tqx_A 202 DKYNALVMVDDSHAVGFIGENGRGTPEYCGVADRVDILTGTLGKALGGASG-GYTSGHKEIIEWLRNRSRP-----YLFS 275 (399)
T ss_dssp HHTTCEEEEECTTTTTTSSTTSCCHHHHHTCTTCCSEEEEESSSSSCSSCC-EEEEECHHHHHHHHHHCHH-----HHSS
T ss_pred HHcCCEEEEECCccccccCCCCCchHHhhCCCCCCcEEEecchHhcccCce-EEEEcCHHHHHHHHHhCcc-----eecc
Confidence 99999999999997654321 1111 256999999999776 988 9999998777666543210 1124
Q ss_pred cCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc-cChhHHHHHh--
Q psy15216 234 GTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGESLLMAI-- 310 (2602)
Q Consensus 234 gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~L-- 310 (2602)
++++...++++.++++....+.++.++++.++++++.+.|.+ . ++.+..+. ..++.+.++. .+..++...|
T Consensus 276 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~ 349 (399)
T 3tqx_A 276 NTVAPVIVATSLKVLELLKTEGPQLRKQLQENSRYFRAGMEK-L-GFQLVPGN----HPIIPVMLGDAQLATNMADHLLQ 349 (399)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH-H-TCCBCCCS----SSEEEEEEECHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH-c-CCCcCCCC----CCEEEEEeCCHHHHHHHHHHHHH
Confidence 577778877887888865466789999999999999999987 3 66555222 2334444443 2455666666
Q ss_pred CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 311 KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 311 ~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
+||.++++..+..+ ...+++|++++.+++++|+++++++|++.
T Consensus 350 ~gi~v~~~~~~~~~----------------~~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 392 (399)
T 3tqx_A 350 EGIYVVGFSYPVVP----------------MGKARIRVQMSAVHTQQQLDRAIEAFGQV 392 (399)
T ss_dssp TTEECCEECTTTSC----------------TTCEEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred CCCEEeeeCCCCCC----------------CCCceEEEEeecCCCHHHHHHHHHHHHHH
Confidence 79999876432211 12378999999999999999999999964
|
| >3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.90 E-value=6e-23 Score=266.21 Aligned_cols=334 Identities=14% Similarity=0.123 Sum_probs=231.9
Q ss_pred CCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCC
Q psy15216 7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRG 86 (2602)
Q Consensus 7 ~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~g 86 (2602)
.|..+.+.+++.+.+...+.++ .+..+++|+.+++++|.+ ++++++|+|+|+++++.++. +++|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~la~~~~~~--~~~~~~~gt~a~~~~~~~~~---~~~g 78 (374)
T 3uwc_A 15 FADIEPYLNDLREFIKTADFTL-----------GAELEKFEKRFAALHNAP--HAIGVGTGTDALAMSFKMLN---IGAG 78 (374)
T ss_dssp TSSCHHHHHHHHHHHHHTCCSS-----------CHHHHHHHHHHHHHTTCS--EEEEESCHHHHHHHHHHHTT---CCTT
T ss_pred CCCchHHHHHHHHHHHcCCccc-----------ChhHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHcC---CCCC
Confidence 3443447888888776532111 235788999999999976 88999999999999999982 2799
Q ss_pred CEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHhcC
Q psy15216 87 KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKG 166 (2602)
Q Consensus 87 d~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~~g 166 (2602)
|+|+++.++|+++...+... |++++.++.++++.+|++++++++++++++|+ ++||||.+.|+++|.++|++||
T Consensus 79 d~v~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~---~~n~~G~~~~~~~i~~~~~~~~ 152 (374)
T 3uwc_A 79 DEVITCANTFIASVGAIVQA---GATPVLVDSENGYVIDPEKIEAAITDKTKAIM---PVHYTGNIADMPALAKIAKKHN 152 (374)
T ss_dssp CEEEEESSSCHHHHHHHHHT---TCEEEEECBCTTSSBCGGGTGGGCCTTEEEEC---CBCGGGCCCCHHHHHHHHHHTT
T ss_pred CEEEECCCccHHHHHHHHHc---CCEEEEEecCCCCCcCHHHHHHhCCCCceEEE---EeCCcCCcCCHHHHHHHHHHcC
Confidence 99999999999987766544 99999999987888999999999999999888 7889999999999999999999
Q ss_pred CEEEEecccccccccccCCCCC--ccEEEeccc--cccCCCC-cEEEEEec-CCCCcccceecCCCccccccc--cCcch
Q psy15216 167 VIFHCDAAQAVGKIDINIQNYK--VDLMSFSAH--KIYGPKG-IGALYIRR-NPRTRIEAQIHGGGHEYGLRS--GTLAT 238 (2602)
Q Consensus 167 ~~livD~a~a~g~~~~dl~~~~--~D~~~~S~~--K~~Gp~G-~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~--gt~~~ 238 (2602)
+++|+|++|+.|.. ++....+ .|++++|+| |++|+.| .|+++.++ .+.+.+.+...++... .+.. .+.++
T Consensus 153 ~~li~D~~~~~g~~-~~~~~~~~~~d~~~~s~~~~K~l~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 230 (374)
T 3uwc_A 153 LHIVEDACQTILGR-INDKFVGSWGQFACFSLHPLKNLNVWSDAGVIITHSDEYAEKLRLYRNHGLIN-RDVCVEYGINC 230 (374)
T ss_dssp CEEEEECTTCTTCE-ETTEETTSSSSEEEEECSSSSSSCCSSCCEEEEESCHHHHHHHHHHTBTTEEE-TTEESSCCCBC
T ss_pred CEEEEeCCCccCce-eCCeeccccccEEEEeCCCCCcCCccceeEEEEeCCHHHHHHHHHHHhcCccc-cCccccccccC
Confidence 99999999998754 3333333 699999988 9887754 67777665 3444444433222111 1111 11111
Q ss_pred hHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHhhccCc-eEEeCCCCCCCCceEEEEEcccChhHHHHHh--CCeE
Q psy15216 239 HQIVGMGEAFRL-ARIEMKEELKRILFLQKRLYNGLMESIEE-IYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDIA 314 (2602)
Q Consensus 239 ~~~~al~~al~~-~~~~~~~~~~~~~~l~~~l~~~L~~~~~g-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~ 314 (2602)
.+..+.+++.. ....+++..++..++++++.+.|.+ +++ +.+...+....+....+.+...+..++.+.| +||.
T Consensus 231 -~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~ 308 (374)
T 3uwc_A 231 -RMDTIQAVIANRLMNQLETITEKRRGIAHLYDQSFVD-LSEFIDVPVRREGVYHVFHIYVLRVKYRDQLFQYLKDNGIE 308 (374)
T ss_dssp -BCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHTGG-GTTTEECCCCCTTEECCCSSEEEEETTHHHHHHHHHHTTBC
T ss_pred -CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCeEEeccCCCCCceeeEEEEEEcCCHHHHHHHHHHCCCc
Confidence 12223333332 2245678888999999999999987 677 7765433322222222333334666777777 7999
Q ss_pred EcccccCCCCCCChHHHHHHcCCCc-------cCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 315 VSSGSACTSASLEPSYVLRALGCND-------ELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 315 v~~g~~~~~~~~~~~~~~~~~g~~~-------~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
++++..... +..+.+ ..++... ....+.+|++++.++|++||++++++|++.
T Consensus 309 v~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~ 367 (374)
T 3uwc_A 309 VKIHYPIAM-HLQPAA--KSLGYQQGDFPMAEKHGEAVITLPAHPYLTEEEINYIIKKVREF 367 (374)
T ss_dssp CBCSCSSCG-GGSGGG--GGGCCCTTSCHHHHHHHHHEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred cccCCCCcc-ccChhh--hhcCCccCCCccHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHH
Confidence 987752110 111111 1122211 112268999999999999999999999974
|
| >2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=3.4e-23 Score=270.44 Aligned_cols=335 Identities=13% Similarity=0.095 Sum_probs=228.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccc
Q psy15216 2 DYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHF 81 (2602)
Q Consensus 2 d~a~~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~ 81 (2602)
|+.++++..+.+.+++.. +.++.. .+.++....+..+++++++++++|.+ +.++++|+++|+++++.++.
T Consensus 31 d~~~~~~~~~~~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~l~~~la~~~g~~--~~i~~~sG~~a~~~~l~~~~-- 100 (398)
T 2rfv_A 31 IFQTSTFVFDSAEQGAAR-----FALEES-GYIYTRLGNPTTDALEKKLAVLERGE--AGLATASGISAITTTLLTLC-- 100 (398)
T ss_dssp CCCCSBCCCSSHHHHHHH-----C------CCSBTTTCCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHC--
T ss_pred CcCCCccccCCHHHHHHh-----hcCCCC-CCceeCCCChHHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHHh--
Confidence 455555555555555442 222222 33444434567899999999999976 56666777899999999987
Q ss_pred cccCCCEEEEcCCCCcccHHHHHHH-HhCCcEEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHH
Q psy15216 82 YKKRGKHIITVQTEHKSVLDSIRKL-ENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGE 160 (2602)
Q Consensus 82 ~~~~gd~Vlv~~~~~~s~~~~~~~~-~~~G~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~ 160 (2602)
++||+|+++.+.|+++...+..+ +..|++++.++.+ |++++++++++++++|++++|+||||.++|+++|.+
T Consensus 101 --~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~ 173 (398)
T 2rfv_A 101 --QQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAA-----KPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAG 173 (398)
T ss_dssp --CTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECTT-----SHHHHHHHCCTTEEEEEEESSBTTTTBCCCHHHHHH
T ss_pred --CCCCEEEEcCCCcccHHHHHHHHHHHcCCEEEEeCCC-----CHHHHHHhcCCCCeEEEEECCCCCCCcccCHHHHHH
Confidence 79999999999999988877433 5569999999864 899999999999999999999999999999999999
Q ss_pred HHHhcCCEEEEecccccccccccCCCCCccEEEeccccccCCCC---cEEEEEecCCCC-cccceecCCCccccccccCc
Q psy15216 161 LCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKG---IGALYIRRNPRT-RIEAQIHGGGHEYGLRSGTL 236 (2602)
Q Consensus 161 la~~~g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K~~Gp~G---~G~l~~~~~~~~-~l~~~~~g~~~~~~~~~gt~ 236 (2602)
+|++||+++|+|++|+.+..+..+ .+++|+++.|+||+++.+| .|++++++++++ .+.+...+ ++.++.
T Consensus 174 l~~~~~~~li~De~~~~~~~~~~~-~~~~di~~~s~sK~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~------~~~~~~ 246 (398)
T 2rfv_A 174 IAHQQGALLVVDNTFMSPYCQQPL-QLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKD------ITGGCM 246 (398)
T ss_dssp HHHHTTCEEEEECTTTCTTTCCGG-GGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHH------TTCCCC
T ss_pred HHHHcCCEEEEECCCcccccCCch-hhCCcEEEEeCcccccCCCCceEEEEEECHHHHHHHHHHHHHh------CCCCCC
Confidence 999999999999999877653222 3578999999999775444 499999987655 44433211 113456
Q ss_pred chhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccC--------------ceEEeCCCCCCCCceEEEEEccc-
Q psy15216 237 ATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIE--------------EIYINGDMNNRIPHNLNISFNFI- 301 (2602)
Q Consensus 237 ~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~--------------g~~l~~~~~~~~~~~~~~~~~~~- 301 (2602)
+....+++.++++....++ ++..++++.+.+.|.+ .+ ++++..+.......++.+.++..
T Consensus 247 ~~~~~~~~~~~l~~~~~~~----~~~~~~~~~l~~~l~~-~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~~~ 321 (398)
T 2rfv_A 247 SPFNAWLTLRGVKTLGIRM----ERHCENALKIARFLEG-HPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGGL 321 (398)
T ss_dssp CHHHHHHHHHHHTTHHHHH----HHHHHHHHHHHHHHHT-CTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHH
T ss_pred CHHHHHHHHhhhhhHHHHH----HHHHHHHHHHHHHHHc-CCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCCH
Confidence 6666666666776333333 3344455555566654 22 22222111111244555555532
Q ss_pred -ChhHHHHHh--CCeEEcccccCC------CCCC--ChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 302 -EGESLLMAI--KDIAVSSGSACT------SASL--EPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 302 -~~~~~~~~L--~gI~v~~g~~~~------~~~~--~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
+...++..+ .++.+++|..++ ...+ .+...+...|+. +++||+|++.+++++++++++++|++.
T Consensus 322 ~~~~~l~~~~~~~~i~~~~G~~~~li~~~~~~~~~~~~~~~~~~~g~~----~~~iRls~~~~~~~~~i~~l~~al~~~ 396 (398)
T 2rfv_A 322 EAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGIT----DGLIRLSVGLEDPEDIINDLEHAIRKA 396 (398)
T ss_dssp HHHHHHHTTCSSSEECSCCSSSSCEEECHHHHTSSSSCHHHHHHTTCC----TTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcceeccCCCCcceeeecccccccccCCHHHHHhcCCC----CCeEEEEecCCCHHHHHHHHHHHHHhh
Confidence 234455555 477777775432 1100 123344455654 389999999999999999999999853
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=3.6e-22 Score=269.48 Aligned_cols=323 Identities=19% Similarity=0.170 Sum_probs=242.5
Q ss_pred HHHHHHHHHHHhhcc-CCCCCccchhHHHHHHHHHHHHHHHHHHhCCCC--CcE--EEeCCHHHHHHHHHHhhhhhhccC
Q psy15216 1407 PRVVDKMIPYLRVQF-GNPASRNHIYGWTAEKAIEKARNEVAQLIYADP--REI--IWTSGATESNNLAIKGAAHFYKKR 1481 (2602)
Q Consensus 1407 ~~v~eal~~~l~~~~-~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~--~~i--v~t~gaT~al~~al~~l~~~~~~~ 1481 (2602)
..+.+.+.+.+.... .++.. +...........++++++++++|+++ +++ ++|+|+|+|+..++.++. ++
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~--~~~~p~~~~le~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~----~~ 183 (514)
T 3mad_A 110 EHHIAFLNEVYALQSQSNPLH--PDLWPSTAKFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYR----DW 183 (514)
T ss_dssp HHHHHHHHHHHHHHTTCCTTC--TTTCHHHHHHHHHHHHHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHH----HH
T ss_pred CCHHHHHHHHHHHHhhcCCcc--cccChHHHHHHHHHHHHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHHH----HH
Confidence 344455555544321 23322 22234456677888999999999864 677 999999999999999987 34
Q ss_pred C--------CEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccCCceEEEEeccccccccccChHH
Q psy15216 1482 G--------KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILE 1553 (2602)
Q Consensus 1482 g--------d~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~ 1553 (2602)
| |+|+++.++|+++...+... |++++.++.++++.+|+++|+++|++++++|++++++||||.+.|+++
T Consensus 184 g~~~~g~~~d~Vi~~~~~~~~~~~~~~~~---G~~v~~v~~~~~~~~d~~~Le~~i~~~~~~v~~~~~~nptG~~~~l~~ 260 (514)
T 3mad_A 184 ARATKGITAPEAVVPVSAHAAFDKAAQYF---GIKLVRTPLDADYRADVAAMREAITPNTVVVAGSAPGYPHGVVDPIPE 260 (514)
T ss_dssp HHHHHCCSSCEEEEETTSCTHHHHHHHHH---TCEEEEECBCTTSCBCHHHHHHHCCTTEEEEEEETTCTTTCCCCCHHH
T ss_pred hhhhcCCCCCeEEEeCccchHHHHHHHHc---CCeeEEeeeCCCCCCCHHHHHHHhccCCEEEEEeCCCCCCccccCHHH
Confidence 4 89999999999988888777 999999999988999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCEEEEecccccCcc-----------cccCCCCCccEEEEccccc-cCCCceEEEEEecCCCCcccc----c
Q psy15216 1554 IGELCRSKGVIFHCDAAQAVGKI-----------DINIQNYKVDLMSFSAHKI-YGPKGIGALYIRRNPRTRIEA----Q 1617 (2602)
Q Consensus 1554 I~~ia~~~gi~vivD~a~~~g~~-----------~~~l~~~~~D~~v~S~~K~-~gp~G~G~l~~~~~~~~~l~~----~ 1617 (2602)
|.++|++||+++|+|++|+.+.. +++....++|++++|+||+ +++.|+|+++++++....... .
T Consensus 261 i~~la~~~~i~livDea~~~~~~~~~~~~g~~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~~~~~~~~~~~~~~ 340 (514)
T 3mad_A 261 IAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGYGAKGTSVILYRRPDLLHYQYFIAAD 340 (514)
T ss_dssp HHHHHHHHTCEEEEECTTTTTTHHHHHHTTCCCCCCSTTSTTCCEEEECTTTTTCCCSSCEEEEESSHHHHTTTCEEESS
T ss_pred HHHHHHHhCCeEEEecccccccchhHHhcCCCCCcccccCCCCcEEEECchhccCCCCCeEEEEEeCHHHhccccccccc
Confidence 99999999999999999875432 3455566789999999994 788889999998754322211 1
Q ss_pred cccCCccccCCCCCcchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEec
Q psy15216 1618 IHGGGHEYGLRSGTLATHQIVGMGEAFRL-ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF 1696 (2602)
Q Consensus 1618 ~~g~~~~~~~~~gt~~~~~~~al~~aL~~-~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~ 1696 (2602)
+.++........|+.+...+.++.+++.. ...++++..++..++++++.+.|.+ ++++.+..++. .++.+....
T Consensus 341 ~~~~~~~~~~~~gs~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~----~~~~~~~~~ 415 (514)
T 3mad_A 341 WPGGLYFSPTFAGSRPGALSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRA-IPSLKILGDPL----WVIAVASDE 415 (514)
T ss_dssp CTTCSEEESSSCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-STTCEESSCCS----SEEEEECSS
T ss_pred cCCCcccCCccCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh-CCCeEEeCCCe----EEEEEeCCC
Confidence 11111112233567777777788888874 3456889999999999999999988 78888875531 233333333
Q ss_pred CCcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCC-CCCHHHHHHHHHHHHHh
Q psy15216 1697 IEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGR-FTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1697 ~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~-~~t~edid~li~~L~~~ 1765 (2602)
.+..++...| +||.+ ++..+ + +++|++++. .++.+++++++++|++.
T Consensus 416 ~~~~~l~~~L~~~Gi~v-~g~~~--~-------------------~~~Ri~~~~~~~~~e~i~~~l~~L~~~ 465 (514)
T 3mad_A 416 LNIYQVMEEMAGRGWRL-NGLHR--P-------------------PAFHVALTLRHTEPGVVDRFLADLQDA 465 (514)
T ss_dssp SCHHHHHHHHHTTTCBC-EEETT--T-------------------TEEEEECCGGGGSTTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcCCEe-ccCCC--C-------------------CeEEEEEecCCCCHHHHHHHHHHHHHH
Confidence 4556777766 67776 33322 1 579999884 45669999999999974
|
| >1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-22 Score=266.18 Aligned_cols=315 Identities=13% Similarity=0.148 Sum_probs=235.4
Q ss_pred CCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCE
Q psy15216 9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKH 88 (2602)
Q Consensus 9 ~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~ 88 (2602)
+++.+.+++.+.+.. ++.+.. .+.+.+...+...++++++++++|++ +. ++++++|+|+..++.++. ++||+
T Consensus 60 ~~~~v~~a~~~~~~~-~~~~~~-~~~~~~g~~~~~~~l~~~la~~~g~~-~~-i~~~sGs~a~~~~~~~~~----~~gd~ 131 (401)
T 1fc4_A 60 NHPDLIAAAKAGMDS-HGFGMA-SVRFICGTQDSHKELEQKLAAFLGME-DA-ILYSSCFDANGGLFETLL----GAEDA 131 (401)
T ss_dssp TCHHHHHHHHHHHHH-HCSCCC-SCHHHHCCBHHHHHHHHHHHHHHTCS-EE-EEESCHHHHHHTTHHHHC----CTTCE
T ss_pred CCHHHHHHHHHHHHH-hCCCCC-CCCcccCCcHHHHHHHHHHHHHhCCC-cE-EEeCChHHHHHHHHHHHc----CCCCE
Confidence 489999999998865 222221 12222111356789999999999987 44 455666889999988876 89999
Q ss_pred EEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccC------CceEEEEecccCcccccccHHHHHHHH
Q psy15216 89 IITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS------DTILVSVMLVNNEIGVIQPILEIGELC 162 (2602)
Q Consensus 89 Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~------~tklv~i~~~~npTG~~~~l~~I~~la 162 (2602)
|+++.+.|+++...+ +..|++++.++. .|+++|++++++ ++++|++++++||||.++|+++|.++|
T Consensus 132 v~~~~~~~~~~~~~~---~~~g~~~~~~~~-----~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~~~~i~~l~ 203 (401)
T 1fc4_A 132 IISDALNHASIIDGV---RLCKAKRYRYAN-----NDMQELEARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDLA 203 (401)
T ss_dssp EEEETTCCHHHHHHH---HTSCSEEEEECT-----TCHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECCHHHHHHHH
T ss_pred EEEcchhHHHHHHHH---HHcCCceEEECC-----CCHHHHHHHHHHhhccCCCceEEEEeCCcCCCCCCCCHHHHHHHH
Confidence 999999998876654 445999998873 478999998865 799999999999999999999999999
Q ss_pred HhcCCEEEEecccccccc-c--------ccCCCCCccEEEecccccc-CCCCcEEEEEecCCCCcccceecCCCcccccc
Q psy15216 163 RSKGVIFHCDAAQAVGKI-D--------INIQNYKVDLMSFSAHKIY-GPKGIGALYIRRNPRTRIEAQIHGGGHEYGLR 232 (2602)
Q Consensus 163 ~~~g~~livD~a~a~g~~-~--------~dl~~~~~D~~~~S~~K~~-Gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~ 232 (2602)
++||+++|+|++|+.+.. + +++.. +.|++++|+||++ |+.| ||+++++++++.+.+.... .. .
T Consensus 204 ~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~-~~di~~~s~sK~~~~~~g-G~~~~~~~~~~~l~~~~~~----~~-~ 276 (401)
T 1fc4_A 204 DKYDALVMVDDSHAVGFVGENGRGSHEYCDVMG-RVDIITGTLGKALGGASG-GYTAARKEVVEWLRQRSRP----YL-F 276 (401)
T ss_dssp HHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTT-CCSEEEEESSSTTCSSSC-EEEEECHHHHHHHHHHCHH----HH-H
T ss_pred HHcCCEEEEECcccccccCCCCCccHHHcCCCc-CCcEEEecchhhccCCCC-EEEEcCHHHHHHHHHhCcC----ce-e
Confidence 999999999999975543 2 33332 5799999999977 7787 9999988776666542210 11 1
Q ss_pred ccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc-cChhHHHHHh-
Q psy15216 233 SGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGESLLMAI- 310 (2602)
Q Consensus 233 ~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~L- 310 (2602)
.++++....+++.++++.... .++..+++.++++++.+.|.+ . ++.+. +. ...++.+.++. .+..++...|
T Consensus 277 ~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~l~~~L~~-~-g~~~~-~~---~~~~~~~~~~~~~~~~~l~~~l~ 349 (401)
T 1fc4_A 277 SNSLAPAIVAASIKVLEMVEA-GSELRDRLWANARQFREQMSA-A-GFTLA-GA---DHAIIPVMLGDAVVAQKFARELQ 349 (401)
T ss_dssp SCCCCHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHH-T-TCCBC-CS---SSSEEEEEEECHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHH-c-CCccc-CC---CCCEEEEEcCChHHHHHHHHHHH
Confidence 346777778777788875543 477888999999999999987 3 66555 21 23445555543 3455666666
Q ss_pred -CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 311 -KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 311 -~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
+||.++++..|..+ ...+++||+++.+++++|+++++++|++.
T Consensus 350 ~~gi~v~~~~~~~~~----------------~~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 393 (401)
T 1fc4_A 350 KEGIYVTGFFYPVVP----------------KGQARIRTQMSAAHTPEQITRAVEAFTRI 393 (401)
T ss_dssp HTTEECCEECTTSSC----------------TTCEEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred HCCcEEeeecCCCCC----------------CCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 79999988765422 01368999999999999999999999964
|
| >3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} | Back alignment and structure |
|---|
Probab=99.90 E-value=9.7e-23 Score=266.56 Aligned_cols=316 Identities=14% Similarity=0.096 Sum_probs=235.7
Q ss_pred CCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCE
Q psy15216 1405 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKH 1484 (2602)
Q Consensus 1405 ~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~ 1484 (2602)
.++.+.+++.+.+.... +... .|.......+..+++++++++++|. +++++|+|+|+|+..++.++. ++||+
T Consensus 58 ~~~~v~~a~~~~~~~~~-~~~~-~~~~~~g~~~~~~~l~~~la~~~g~--~~v~~~~ggt~a~~~~~~~~~----~~gd~ 129 (398)
T 3a2b_A 58 TDTRIIKAAQDALEKYG-TGCA-GSRFLNGTLDIHVELEEKLSAYVGK--EAAILFSTGFQSNLGPLSCLM----GRNDY 129 (398)
T ss_dssp GCHHHHHHHHHHHHHHC-SCCC-SBTTTTCCCHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHHSS----CTTCE
T ss_pred CCHHHHHHHHHHHHHcC-CCCC-CcCcccCCcHHHHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHHHHh----CCCCE
Confidence 67889999999886532 1111 1111112235678899999999996 489999999999999999986 89999
Q ss_pred EEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccC----CceEEEEeccccccccccChHHHHHHhhh
Q psy15216 1485 IITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS----DTILVSVMLVNNEIGVIQPILEIGELCRS 1560 (2602)
Q Consensus 1485 Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~----~t~lv~l~~~~n~tG~~~~l~~I~~ia~~ 1560 (2602)
|+++++.|+++...+... |++++.++. +|+++|++++++ ++++|++++++||||.+.|+++|.++|++
T Consensus 130 V~~~~p~~~~~~~~~~~~---g~~~~~v~~-----~d~~~l~~~l~~~~~~~~~~v~~~~~~nptG~~~~~~~l~~~~~~ 201 (398)
T 3a2b_A 130 ILLDERDHASIIDGSRLS---FSKVIKYGH-----NNMEDLRAKLSRLPEDSAKLICTDGIFSMEGDIVNLPELTSIANE 201 (398)
T ss_dssp EEEETTCCHHHHHHHHHS---SSEEEEECT-----TCHHHHHHHHHTSCSSSCEEEEEESBCTTTCCBCCHHHHHHHHHH
T ss_pred EEECCccCHHHHHHHHHc---CCceEEeCC-----CCHHHHHHHHHhhccCCceEEEEeCCCCCCCCccCHHHHHHHHHH
Confidence 999999999987776554 999999875 589999999986 79999999999999999999999999999
Q ss_pred cCCEEEEecccccCcc---cccCC---CC--CccEEEEccccccCCCceEEEEEecCCCCccccccccCCccccCCCCCc
Q psy15216 1561 KGVIFHCDAAQAVGKI---DINIQ---NY--KVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTL 1632 (2602)
Q Consensus 1561 ~gi~vivD~a~~~g~~---~~~l~---~~--~~D~~v~S~~K~~gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~ 1632 (2602)
||+++|+|++|+.+.. ..++. .. ++|++++|+||.+||+| ||+++++++++.+.+.... ....+++
T Consensus 202 ~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~~~G-G~~~~~~~~~~~l~~~~~~-----~~~~~~~ 275 (398)
T 3a2b_A 202 FDAAVMVDDAHSLGVIGHKGAGTASHFGLNDDVDLIMGTFSKSLASLG-GFVAGDADVIDFLKHNARS-----VMFSASM 275 (398)
T ss_dssp HTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTCSSC-EEEEECHHHHHHHHHHCHH-----HHSSBCC
T ss_pred cCcEEEEECCCcccccCCCCCchHhhcCCCcCCeEEEecccccccCCC-cEEEeCHHHHHHHHHhccc-----ceecCCC
Confidence 9999999999986532 11111 11 26899999999999988 9999988766655432110 1123345
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEec-CCcHHHHHhc--CCE
Q psy15216 1633 ATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGESLLMAI--KDI 1709 (2602)
Q Consensus 1633 ~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~L--~gI 1709 (2602)
+..+.+++.++|+.. ...++.++++.++++++.+.|.+ . ++.+..+. ..+..+.++. .+..++...| +||
T Consensus 276 ~~~~~a~~~~~l~~~-~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~----g~~~~~~~~~~~~~~~l~~~l~~~gi 348 (398)
T 3a2b_A 276 TPASVASTLKALEII-QNEPEHIEKLWKNTDYAKAQLLD-H-GFDLGATE----SPILPIFIRSNEKTFWVTKMLQDDGV 348 (398)
T ss_dssp CHHHHHHHHHHHHHH-HHCTHHHHHHHHHHHHHHHHHHH-T-TCCBCSCC----SSEEEEECCCHHHHHHHHHHHHHTTE
T ss_pred CHHHHHHHHHHHHHH-hhCHHHHHHHHHHHHHHHHHHHh-c-CCCcCCCC----CCEEEEEcCCHHHHHHHHHHHHHCCc
Confidence 555655566777754 33567888899999999999987 4 66554321 2233333331 2345566655 799
Q ss_pred EEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1710 AVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1710 ~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
.++++..|..+ ...+++||+++.+++.+++++++++|++.
T Consensus 349 ~v~~~~~~~~~----------------~~~~~iRis~~~~~~~e~i~~~~~~l~~~ 388 (398)
T 3a2b_A 349 FVNPVVSPAVP----------------AEESLIRFSLMATHTYDQIDEAIEKMVKV 388 (398)
T ss_dssp ECEEECTTTSC----------------GGGCEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred EEEeeCCCCCC----------------CCCceEEEEEeCCCCHHHHHHHHHHHHHH
Confidence 99998776432 12378999999999999999999999974
|
| >1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=5.4e-23 Score=265.02 Aligned_cols=317 Identities=17% Similarity=0.190 Sum_probs=235.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhccc
Q psy15216 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAH 80 (2602)
Q Consensus 1 Ld~a~~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~ 80 (2602)
||+++.+++++.+.+++.+.+.. ++. +....+..+++++++++++|+++++|++++|+|+|++.++.++.
T Consensus 18 l~~~~~~~~~~~v~~a~~~~~~~---~~~------~~g~~~~~~~~~~~l~~~~g~~~~~v~~~~g~t~a~~~~~~~~~- 87 (359)
T 1svv_A 18 FVNDYSVGMHPKILDLMARDNMT---QHA------GYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLAL- 87 (359)
T ss_dssp CSCSCSSCCCHHHHHHHHHHTTC---CCC------STTCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHHC-
T ss_pred ecCCCcCCCCHHHHHHHHHHHhh---ccc------cccccHHHHHHHHHHHHHhCCCCccEEEeCCchHHHHHHHHHHh-
Confidence 67777788999999999998753 111 11123568899999999999988899999999999999999987
Q ss_pred ccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccCC-------ceEEEEecccCcccccc
Q psy15216 81 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSD-------TILVSVMLVNNEIGVIQ 153 (2602)
Q Consensus 81 ~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~~-------tklv~i~~~~npTG~~~ 153 (2602)
++||+|+++.++|+++... ..++..|++++.++.+ ++.+|+++|+++++++ +++|+++++ ||||.++
T Consensus 88 ---~~gd~vl~~~~~~~~~~~~-~~~~~~g~~~~~v~~~-~~~~d~~~l~~~l~~~~~~~~~~~~~v~~~~~-~ptG~~~ 161 (359)
T 1svv_A 88 ---RPWEAVIATQLGHISTHET-GAIEATGHKVVTAPCP-DGKLRVADIESALHENRSEHMVIPKLVYISNT-TEVGTQY 161 (359)
T ss_dssp ---CTTEEEEEETTSHHHHSST-THHHHTTCCEEEECCT-TSCCCHHHHHHHHHHSCSTTSCEEEEEEEESS-CTTSCCC
T ss_pred ---CCCCEEEEcccchHHHHHH-HHHhcCCCeeEEEeCC-CCeecHHHHHHHHHHHHhccCCCceEEEEEcC-CCCceec
Confidence 7999999999999998663 1234459999999976 6789999999999765 899999999 7999999
Q ss_pred c---HHHHHHHHHhcCCEEEEeccc---ccccccccCCC----CCccEEEeccccccCCCCcEEEEEecCCCCcccceec
Q psy15216 154 P---ILEIGELCRSKGVIFHCDAAQ---AVGKIDINIQN----YKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIH 223 (2602)
Q Consensus 154 ~---l~~I~~la~~~g~~livD~a~---a~g~~~~dl~~----~~~D~~~~S~~K~~Gp~G~G~l~~~~~~~~~l~~~~~ 223 (2602)
| +++|.++|++||+++|+|++| +.+..+.+... ..+|++++|+||+++|.|+|++++++++++.+.+...
T Consensus 162 ~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~g~~~~~g~l~~~~~~~~~~~~~~~ 241 (359)
T 1svv_A 162 TKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAGGMFGEALIILNDALKPNARHLIK 241 (359)
T ss_dssp CHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTTCSSCEEEEECSGGGCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCcchhhhhhhhcCCEEEEecccCCCCCceEEEEEcccHHHHHHHHHh
Confidence 9 888999999999999999999 55555444332 3578999999999888889999999988888765421
Q ss_pred CCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcccCh
Q psy15216 224 GGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEG 303 (2602)
Q Consensus 224 g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~ 303 (2602)
.++. ....+.....++.++++ ..++++..+++.++++++.+.| + .+++++..+.. ..++.+.++
T Consensus 242 ~~~~-----~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~l~~~L-~-~~~~~~~~~~~---~~~~~~~~~---- 305 (359)
T 1svv_A 242 QRGA-----LMAKGWLLGIQFEVLMK--DNLFFELGAHSNKMAAILKAGL-E-ACGIRLAWPSA---SNQLFPILE---- 305 (359)
T ss_dssp HTTC-----CCTTTHHHHHHHHHHTS--TTHHHHHHHHHHHHHHHHHHHH-H-HTTCCBSSCCS---SSEECBEEE----
T ss_pred cCCc-----ccccchhhHHHHHHHHh--hhhHHHHHHHHHHHHHHHHHHh-c-cCCeEEccCCc---cceEEEEcC----
Confidence 1110 00111122222222232 2345778889999999999999 5 47877764432 122222232
Q ss_pred hHHHHHh--C-CeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 304 ESLLMAI--K-DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 304 ~~~~~~L--~-gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
.++...| + ||.+. +.. + ...+++|++++..++++|+++++++|++.
T Consensus 306 ~~~~~~l~~~~gi~v~-~~~--~-----------------~~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 354 (359)
T 1svv_A 306 NTMIAELNNDFDMYTV-EPL--K-----------------DGTCIMRLCTSWATEEKECHRFVEVLKRL 354 (359)
T ss_dssp HHHHHHHTTTEECEEE-EEE--T-----------------TTEEEEEEECCTTCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCEEEE-ecc--c-----------------CCCceEEEEccCcCCHHHHHHHHHHHHHH
Confidence 4566666 5 78872 110 0 01378999999899999999999999863
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.3e-23 Score=272.37 Aligned_cols=316 Identities=13% Similarity=0.133 Sum_probs=235.2
Q ss_pred CCHHHHHHHHHHHhhh----cCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhccccccc
Q psy15216 9 IDPRVVDKMIPYLRVQ----FGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKK 84 (2602)
Q Consensus 9 ~p~~v~~a~~~~l~~~----~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~ 84 (2602)
+++.+.+++.+.+... ..++.. ....++|+++++++|+++++|++|+|+++|+.+++.++. +
T Consensus 48 ~~~~v~~a~~~~~~~~~~~~~~y~~~----------~~~~~l~~~la~~~g~~~~~v~~~~g~~~al~~~~~~~~----~ 113 (397)
T 2zyj_A 48 PKEEAAEAAARILREKGEVALQYSPT----------EGYAPLRAFVAEWIGVRPEEVLITTGSQQALDLVGKVFL----D 113 (397)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTSCCCT----------TCCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHC----C
T ss_pred CHHHHHHHHHHHHHhcchhhhCCCCC----------CCCHHHHHHHHHHhCCChhhEEEeccHHHHHHHHHHHhC----C
Confidence 5678888888877641 222221 124678999999999888899999999999999999987 7
Q ss_pred CCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccC-CceEE-EEecccCcccccccHH---HHH
Q psy15216 85 RGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS-DTILV-SVMLVNNEIGVIQPIL---EIG 159 (2602)
Q Consensus 85 ~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~-~tklv-~i~~~~npTG~~~~l~---~I~ 159 (2602)
+||+|+++.+.|+++...+.. .|++++.++.++++ +|+++|++++++ ++++| ++++++||||.++|.+ +|.
T Consensus 114 ~gd~Vl~~~p~y~~~~~~~~~---~g~~~~~~~~~~~~-~d~~~l~~~l~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~ 189 (397)
T 2zyj_A 114 EGSPVLLEAPSYMGAIQAFRL---QGPRFLTVPAGEEG-PDLDALEEVLKRERPRFLYLIPSFQNPTGGLTPLPARKRLL 189 (397)
T ss_dssp TTCEEEEEESCCHHHHHHHHT---TCCEEEEEEEETTE-ECHHHHHHHHHHCCCSCEEECCBSCTTTCCBCCHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHH---cCCEEEecCcCCCC-CCHHHHHHHHhhcCCeEEEECCCCcCCCCCcCCHHHHHHHH
Confidence 999999999999987766554 49999999887655 899999999975 88987 5799999999999865 889
Q ss_pred HHHHhcCCEEEEecccccccc----cccCCCCC------ccEEEeccccccCCCC--cEEEEEecCCCCcccceecCCCc
Q psy15216 160 ELCRSKGVIFHCDAAQAVGKI----DINIQNYK------VDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGH 227 (2602)
Q Consensus 160 ~la~~~g~~livD~a~a~g~~----~~dl~~~~------~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g~~~ 227 (2602)
++|++||+++|+|++|+.... +.++..++ ..+++.|+||++| +| +||+++++++++.+.+...
T Consensus 190 ~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~G~r~G~~~~~~~~~~~l~~~~~---- 264 (397)
T 2zyj_A 190 QMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGYPGVIYLGSFSKVLS-PGLRVAFAVAHPEALQKLVQAKQ---- 264 (397)
T ss_dssp HHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHHTCCCEEEEEESTTTTC-GGGCCEEEECCHHHHHHHHHHHH----
T ss_pred HHHHHcCCEEEEeCCcccccCCCCCCCchhhhCcccCCCeEEEEeccccccc-ccceeEEEecCHHHHHHHHHHHH----
Confidence 999999999999999986432 22333332 2388899999888 66 7999998877666654321
Q ss_pred cccccccCcchhHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHhhccC-ceEEeCCCCCCCCceEEEEEc-ccChh
Q psy15216 228 EYGLRSGTLATHQIVGMGEAFRLAR-IEMKEELKRILFLQKRLYNGLMESIE-EIYINGDMNNRIPHNLNISFN-FIEGE 304 (2602)
Q Consensus 228 ~~~~~~gt~~~~~~~al~~al~~~~-~~~~~~~~~~~~l~~~l~~~L~~~~~-g~~l~~~~~~~~~~~~~~~~~-~~~~~ 304 (2602)
.+..+ .+.....++.++|+... .++++..+++.++++++.+.|.+.+| ++.+..+.. ...+.+.++ ..+..
T Consensus 265 --~~~~~-~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~~~~---g~~~~~~~~~~~~~~ 338 (397)
T 2zyj_A 265 --GADLH-TPMLNQMLVHELLKEGFSERLERVRRVYREKAQAMLHALDREVPKEVRYTRPKG---GMFVWMELPKGLSAE 338 (397)
T ss_dssp --HHHSS-CCHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSEECCCSB---SSEEEEECSTTCCHH
T ss_pred --hhcCC-CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEccCCc---cEEEEEEcCCCCCHH
Confidence 11122 35555666666666321 45778888888999999999977446 577764432 234445554 24566
Q ss_pred HHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 305 SLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 305 ~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
++...| +||.+++|..|.+. ....+++||+++.. +++++++++++|++.
T Consensus 339 ~~~~~l~~~gi~v~~g~~f~~~---------------~~~~~~iRis~~~~-~~~~i~~~~~~l~~~ 389 (397)
T 2zyj_A 339 GLFRRALEENVAFVPGGPFFAN---------------GGGENTLRLSYATL-DREGIAEGVRRLGRA 389 (397)
T ss_dssp HHHHHHHHTTEEEEESGGGCTT---------------SCCTTEEEEECSSS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCEEechHHhcCC---------------CCCCCeEEEEcCCC-CHHHHHHHHHHHHHH
Confidence 777766 79999998877532 01237899999875 899999999999864
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=2.9e-22 Score=260.90 Aligned_cols=315 Identities=14% Similarity=0.079 Sum_probs=233.4
Q ss_pred CCCHHHHHHHHHHHhh-ccCCCCCccchhHHHHHHHHHHHHHHHHHH----hC--CCCC-cEEEeCCHHHHHHHHHHhhh
Q psy15216 1404 PIDPRVVDKMIPYLRV-QFGNPASRNHIYGWTAEKAIEKARNEVAQL----IY--ADPR-EIIWTSGATESNNLAIKGAA 1475 (2602)
Q Consensus 1404 ~~~~~v~eal~~~l~~-~~~np~~~~~~~~~~~~~~~~~lr~~ia~~----~g--~~~~-~iv~t~gaT~al~~al~~l~ 1475 (2602)
+.++.+.+++.+.++. ...++.. . ...++|++++++ +| ++++ +|++|+|+++|+..++.++.
T Consensus 43 ~~~~~v~~a~~~~~~~~~~~y~~~------~----g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~ 112 (386)
T 1u08_A 43 DGPRYLQERLAHHVAQGANQYAPM------T----GVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITALV 112 (386)
T ss_dssp CCCHHHHHHHHHHHHTTCCSCCCT------T----CCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHhhccCCCCC------C----CCHHHHHHHHHHHHHHhCCCCCCCCCEEEcCChHHHHHHHHHHhC
Confidence 4678899999998865 1222221 0 124455566555 46 4677 99999999999999999986
Q ss_pred hhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCC-CCCcChhHHHhhccCCceEEEEeccccccccccC---h
Q psy15216 1476 HFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---I 1551 (2602)
Q Consensus 1476 ~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~-~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~---l 1551 (2602)
++||+|++++++|+++...+... |++++.++.++ ++.+|+++|++++++++++|++++|+||||.++| +
T Consensus 113 ----~~gd~vl~~~p~~~~~~~~~~~~---g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l 185 (386)
T 1u08_A 113 ----RNGDEVICFDPSYDSYAPAIALS---GGIVKRMALQPPHFRVDWQEFAALLSERTRLVILNTPHNPSATVWQQADF 185 (386)
T ss_dssp ----CTTCEEEEEESCCTTHHHHHHHT---TCEEEEEECCTTTCCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHH
T ss_pred ----CCCCEEEEeCCCchhHHHHHHHc---CCEEEEeecCcccCcCCHHHHHHhhcccCEEEEEeCCCCCCCccCCHHHH
Confidence 79999999999999987765544 99999999876 5779999999999999999999999999999997 6
Q ss_pred HHHHHHhhhcCCEEEEecccccCc----ccccCC----CCCccEEEEccccccCCCc--eEEEEEecCCCCccccccccC
Q psy15216 1552 LEIGELCRSKGVIFHCDAAQAVGK----IDINIQ----NYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGG 1621 (2602)
Q Consensus 1552 ~~I~~ia~~~gi~vivD~a~~~g~----~~~~l~----~~~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~~g~ 1621 (2602)
++|.++|++||+++|+|++|+... ...++. ..+.++++.|+||.+|++| +||+++++++++.+.+...
T Consensus 186 ~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~-- 263 (386)
T 1u08_A 186 AALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVGYCVAPAPISAEIRKVHQ-- 263 (386)
T ss_dssp HHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGCCEEEECCHHHHHHHHHHHH--
T ss_pred HHHHHHHHHcCcEEEEEccccccccCCCCCcChhcccCccCcEEEEecchhhcCCcccceEEEEcCHHHHHHHHHHHH--
Confidence 889999999999999999997521 111221 2357899999999888888 8999998876665544321
Q ss_pred CccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEec---CC
Q psy15216 1622 GHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF---IE 1698 (2602)
Q Consensus 1622 ~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~---~~ 1698 (2602)
...++.+...+.++.++|+....++++.++++.++++++.+.|.+ . ++.+..+.. .....+.++. .+
T Consensus 264 -----~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~---g~~~~~~~~~~~~~~ 333 (386)
T 1u08_A 264 -----YLTFSVNTPAQLALADMLRAEPEHYLALPDFYRQKRDILVNALNE-S-RLEILPCEG---TYFLLVDYSAVSTLD 333 (386)
T ss_dssp -----HHTSSCCHHHHHHHHHHHHHCTHHHHTHHHHHHHHHHHHHHHTTS-S-SCEECCCCB---SSEEEEECTTTCCSC
T ss_pred -----hhccCCChHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHH-C-CCeecCCCc---eEEEEEecCCCCCCC
Confidence 112345555666676777644456788889999999999999987 3 777654322 2233344443 24
Q ss_pred cHHHHHhc---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1699 GESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1699 ~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
..++...| +||.+++|..|... ....+++||+++ ++.+++++++++|++
T Consensus 334 ~~~~~~~l~~~~gi~v~~g~~f~~~---------------~~~~~~iRis~~--~~~~~i~~~~~~l~~ 385 (386)
T 1u08_A 334 DVEFCQWLTQEHGVAAIPLSVFCAD---------------PFPHKLIRLCFA--KKESTLLAAAERLRQ 385 (386)
T ss_dssp HHHHHHHHHHHSCEECEEGGGGCSS---------------CCCSCEEEEECC--SCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCEEEeCchHhCCC---------------CCCCCEEEEEEc--CCHHHHHHHHHHHhh
Confidence 55666544 69999998776431 012378999998 489999999999874
|
| >1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.2e-22 Score=266.00 Aligned_cols=298 Identities=14% Similarity=0.122 Sum_probs=224.8
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHHH-HhCCcEEE
Q psy15216 1432 GWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDGFRVT 1510 (2602)
Q Consensus 1432 ~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~-~~~G~~v~ 1510 (2602)
+....+.+.++++++++++|++++++++++|+|.+++.++.++. +++||+|+++.++|+++...+..+ +..|++++
T Consensus 103 ~~g~~~~~~~~~~~la~~~g~~~~~i~~~~g~taa~ea~~~a~~---~~~gd~Viv~~~~h~s~~~~~~~~a~~~G~~v~ 179 (438)
T 1wyu_A 103 SQGVLQATFEYQTMIAELAGLEIANASMYDGATALAEGVLLALR---ETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLL 179 (438)
T ss_dssp CHHHHHHHHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHHH---HHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEE
T ss_pred hhhHHHHHHHHHHHHHHHhCCCccceEEeCcHHHHHHHHHHHHh---cCCCCEEEEcCccCHhHHHHHHHHHHHCCCEEE
Confidence 45667788999999999999988888999999966555555543 368999999999999998888654 55699999
Q ss_pred EeccCCCCCcChhHHHhhccCCceEEEEeccccccccccChHHHHHHhhhcCCEEEEecc-cccCcccccCCCCCccEEE
Q psy15216 1511 YLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAA-QAVGKIDINIQNYKVDLMS 1589 (2602)
Q Consensus 1511 ~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~~ia~~~gi~vivD~a-~~~g~~~~~l~~~~~D~~v 1589 (2602)
.++. .++.+|+++ |+++|++|+++|| |+||.+.|+++|.++|++||+++++|.. +++|....+ ..+++|+++
T Consensus 180 ~v~~-~~~~~d~~~----i~~~t~~v~i~~p-n~tG~~~~l~~i~~la~~~g~~vivd~d~~a~g~~~~~-~~~g~D~~~ 252 (438)
T 1wyu_A 180 TLPL-EGGRTPLPE----VGEEVGAVVVQNP-NFLGALEDLGPFAEAAHGAGALFVAVADPLSLGVLKPP-GAYGADIAV 252 (438)
T ss_dssp EECC-BTTBCCCCC----CCTTEEEEEEESS-CTTSBCCCHHHHHHHHHHTTCEEEEECCTTGGGTBCCH-HHHTCSEEE
T ss_pred EEcC-cCCccCHHH----hCCCeEEEEEECC-CCCeEEecHHHHHHHHHHcCCEEEEEechhhccCcCCC-ccCCCCEEE
Confidence 9987 457788776 7889999999999 9999999999999999999999998865 666654433 346789999
Q ss_pred Ecccc------ccCCCceEEEEEecCCCCccccccccCCc-----------------cccCCCCCcch---hHHHHHHHH
Q psy15216 1590 FSAHK------IYGPKGIGALYIRRNPRTRIEAQIHGGGH-----------------EYGLRSGTLAT---HQIVGMGEA 1643 (2602)
Q Consensus 1590 ~S~~K------~~gp~G~G~l~~~~~~~~~l~~~~~g~~~-----------------~~~~~~gt~~~---~~~~al~~a 1643 (2602)
+|.|| ++|| |+|++++++++.+.+.+...|+.. ..++..+++++ ..+.++.++
T Consensus 253 ~s~kk~~~~~~~~Gp-~~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~r~~~~t~~~~~~~~~~a~~aa 331 (438)
T 1wyu_A 253 GDGQSLGLPMGFGGP-HFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGA 331 (438)
T ss_dssp EECTTTTCCCGGGCS-CCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHH
T ss_pred ECCcccCCCccCCCC-CeeEEEEcHHHHHhCCCceeccccccCCCcceeeeccccccccchhcccCCccchHHHHHHHHH
Confidence 99776 3456 799999998877766543322210 01233466665 556666555
Q ss_pred --HHH-HHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecCCcHHHHHhc--CCEEE--ccccc
Q psy15216 1644 --FRL-ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDIAV--SSGSA 1716 (2602)
Q Consensus 1644 --L~~-~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~v--~~g~~ 1716 (2602)
+.. ...+++++.++..++++++.+.|.+ ++|+.+..+. . ......+.++ .+..++...| +||.+ +++..
T Consensus 332 ~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~-~-~~~~~~~~~~-~~~~~~~~~L~~~gi~v~~~~~~~ 407 (438)
T 1wyu_A 332 MYLAALGPEGLREVALKSVEMAHKLHALLLE-VPGVRPFTPK-P-FFNEFALALP-KDPEAVRRALAERGFHGATPVPRE 407 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-STTCEECSCS-S-BCSEEEEECS-SCHHHHHHHHHHTTCCCCEECCTT
T ss_pred HHHHHhCHHHHHHHHHHHHHHHHHHHHHHhc-CCCeEECCCC-C-eEEEEEEeCC-CCHHHHHHHHHHCCceeccccccc
Confidence 553 3456888999999999999999988 6798887542 1 1222223322 3556777666 78887 44544
Q ss_pred cCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1717 CTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1717 ~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
|. .+++|+|++.++|.+|+++++++|++
T Consensus 408 ~~--------------------~~~lRis~~~~~t~edi~~~~~~l~~ 435 (438)
T 1wyu_A 408 YG--------------------ENLALFAATELHEEEDLLALREALKE 435 (438)
T ss_dssp SC--------------------SSEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred cC--------------------CCeEEEEecccCCHHHHHHHHHHHHH
Confidence 32 27899999999999999999999986
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=6.4e-23 Score=267.13 Aligned_cols=307 Identities=15% Similarity=0.141 Sum_probs=228.4
Q ss_pred CCCHHHHHHHHHHHhhcc-CCCCCccchhHHHHHHHHHHHHHHHHHHh----CC--CCCcEEEeCCHHHHHHHHHHhhhh
Q psy15216 1404 PIDPRVVDKMIPYLRVQF-GNPASRNHIYGWTAEKAIEKARNEVAQLI----YA--DPREIIWTSGATESNNLAIKGAAH 1476 (2602)
Q Consensus 1404 ~~~~~v~eal~~~l~~~~-~np~~~~~~~~~~~~~~~~~lr~~ia~~~----g~--~~~~iv~t~gaT~al~~al~~l~~ 1476 (2602)
+.++.+.+++.+.+.... .++.. ....++|+.+++++ |+ +++++++|+|+|+|+..++.++.
T Consensus 54 ~~~~~v~~a~~~~~~~~~~~y~~~----------~g~~~lr~~la~~~~~~~g~~~~~~~v~~~~g~t~al~~~~~~l~- 122 (389)
T 1o4s_A 54 PTPEPVVEEAVRFLQKGEVKYTDP----------RGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMALL- 122 (389)
T ss_dssp CCCHHHHHHHHHHHTTCCCCCCCT----------TCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHhcCCCCCCCC----------CCCHHHHHHHHHHHHHHhCCCCCHHHEEEecCHHHHHHHHHHHhC-
Confidence 457889999988886421 12211 11355667777766 75 67899999999999999999986
Q ss_pred hhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCC--CCCcChhHHHhhccCCceEEEEeccccccccccC---h
Q psy15216 1477 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---I 1551 (2602)
Q Consensus 1477 ~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~---l 1551 (2602)
++||+|++++++|+++...+... |++++.++.++ ++.+|+++|++++++++++|++++|+||||.++| +
T Consensus 123 ---~~gd~Vl~~~~~~~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l 196 (389)
T 1o4s_A 123 ---DPGDEVIVFSPVWVSYIPQIILA---GGTVNVVETFMSKNFQPSLEEVEGLLVGKTKAVLINSPNNPTGVVYRREFL 196 (389)
T ss_dssp ---CTTCEEEEEESCCTTHHHHHHHT---TCEEEEEECCGGGTTCCCHHHHHHTCCTTEEEEEEESSCTTTCCCCCHHHH
T ss_pred ---CCCCEEEEcCCCchhHHHHHHHc---CCEEEEEecCCccCCCCCHHHHHHhcccCceEEEEcCCCCCCCCCCCHHHH
Confidence 79999999999999987766544 99999999875 4678999999999999999999999999999998 9
Q ss_pred HHHHHHhhhcCCEEEEecccccCcc---ccc---CCC-CCccEEEEccccccCCCc--eEEEEEecCCCCccccccccCC
Q psy15216 1552 LEIGELCRSKGVIFHCDAAQAVGKI---DIN---IQN-YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGG 1622 (2602)
Q Consensus 1552 ~~I~~ia~~~gi~vivD~a~~~g~~---~~~---l~~-~~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~~g~~ 1622 (2602)
++|.++|++||+++|+|++|+.+.. +.+ +.. .+.|++++|+||.+|++| +||+++++++++.+.+...++
T Consensus 197 ~~l~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~l~~~~~~~~~l~~~~~~~- 275 (389)
T 1o4s_A 197 EGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRVGYLISSEKVATAVSKIQSHT- 275 (389)
T ss_dssp HHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGGGCCEEEECCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHcCCEEEEEccccccccCCCCCCHhhcCCCCCcEEEEeechhhcCCcccceEEEEeCHHHHHHHHHHhhhc-
Confidence 9999999999999999999986543 111 221 367999999999888888 899999887666555433211
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecCCcHHH
Q psy15216 1623 HEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESL 1702 (2602)
Q Consensus 1623 ~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~ 1702 (2602)
..+.+...+.++.++|+. ++++..+++.++++++.+.|.+ . ++.+..+.. +....+.++ .+..++
T Consensus 276 ------~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~---~~~~~~~~~-~~~~~l 340 (389)
T 1o4s_A 276 ------TSCINTVAQYAALKALEV---DNSYMVQTFKERKNFVVERLKK-M-GVKFVEPEG---AFYLFFKVR-GDDVKF 340 (389)
T ss_dssp ------TCSCCHHHHHHHHHHTTC---CCHHHHHHHHHHHHHHHHHHHH-T-TCCCCCCSB---SSEEEEECS-SCHHHH
T ss_pred ------ccCCCHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHh-c-CCeeecCCc---ceEEEEeCC-CCHHHH
Confidence 123344444444445442 2677788889999999999987 4 665543221 222233333 355666
Q ss_pred HHhc---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1703 LMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1703 ~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
...| +||.+++|..|..+ +++|++++ ++.+++++++++|++
T Consensus 341 ~~~l~~~~gi~v~~g~~f~~~-------------------~~~Ris~~--~~~~~l~~~l~~l~~ 384 (389)
T 1o4s_A 341 CERLLEEKKVALVPGSAFLKP-------------------GFVRLSFA--TSIERLTEALDRIED 384 (389)
T ss_dssp HHHHHHHHCEECEEGGGGTCT-------------------TEEEEECC--SCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCEEEeCchhcCCC-------------------CeEEEEEe--CCHHHHHHHHHHHHH
Confidence 6554 59999988776432 68999998 489999999999986
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=2.3e-22 Score=264.71 Aligned_cols=318 Identities=14% Similarity=0.095 Sum_probs=237.6
Q ss_pred CCCCCHHHHHHHHHHHhhcc--CCCCCccchhHHHHHHHHHHHHHHHHHHhC------------CCCCcEEEeCCHHHHH
Q psy15216 1402 TTPIDPRVVDKMIPYLRVQF--GNPASRNHIYGWTAEKAIEKARNEVAQLIY------------ADPREIIWTSGATESN 1467 (2602)
Q Consensus 1402 ~~~~~~~v~eal~~~l~~~~--~np~~~~~~~~~~~~~~~~~lr~~ia~~~g------------~~~~~iv~t~gaT~al 1467 (2602)
..++++.+.+++.+.++... .++.. ....++|++++++++ +++++|++|+|+++|+
T Consensus 48 ~~~~~~~v~~a~~~~~~~~~~~~y~~~----------~~~~~lr~~la~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~al 117 (416)
T 1bw0_A 48 NLLTSAAQIKKLKEAIDSQECNGYFPT----------VGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGI 117 (416)
T ss_dssp CSCCCHHHHHHHHHHHHTTCSSSCCCT----------TCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEESHHHHHH
T ss_pred CCCCCHHHHHHHHHHhhCCccCCcCCC----------CCCHHHHHHHHHHHHhhhcccccCCCCCCcceEEEeCChHHHH
Confidence 35678899999999886521 12111 124678888888888 6788999999999999
Q ss_pred HHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCC--CCCcChhHHHhhccCCceEEEEecccccc
Q psy15216 1468 NLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEI 1545 (2602)
Q Consensus 1468 ~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~id~d~l~~~i~~~t~lv~l~~~~n~t 1545 (2602)
++++.++. ++||+|++++|+|+++...+.. .|++++.++.++ ++.+|+++|+++++++++++++++|+|||
T Consensus 118 ~~~~~~l~----~~gd~vl~~~p~y~~~~~~~~~---~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~npt 190 (416)
T 1bw0_A 118 LMAITAIC----DAGDYALVPQPGFPHYETVCKA---YGIGMHFYNCRPENDWEADLDEIRRLKDDKTKLLIVTNPSNPC 190 (416)
T ss_dssp HHHHHHHC----CTTCEEEEEESCCTHHHHHHHH---TTCEEEEEEEEGGGTTEECHHHHHHHCCTTEEEEEEESSCTTT
T ss_pred HHHHHHhC----CCCCEEEEcCCCcHhHHHHHHH---cCcEEEEeecCcccCCCCCHHHHHHHhccCCeEEEEeCCCCCC
Confidence 99999986 7999999999999998766554 499999998765 35689999999999999999999999999
Q ss_pred ccccC---hHHHHHHhhhcCCEEEEecccccC----c----ccccCCCC---CccEEEEccccccCCCc--eEEEEEecC
Q psy15216 1546 GVIQP---ILEIGELCRSKGVIFHCDAAQAVG----K----IDINIQNY---KVDLMSFSAHKIYGPKG--IGALYIRRN 1609 (2602)
Q Consensus 1546 G~~~~---l~~I~~ia~~~gi~vivD~a~~~g----~----~~~~l~~~---~~D~~v~S~~K~~gp~G--~G~l~~~~~ 1609 (2602)
|.++| +++|.++|++||+++|+|++|+.. . ...++..+ +.++++.|+||.++++| +||++++++
T Consensus 191 G~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~Glr~G~~~~~~~ 270 (416)
T 1bw0_A 191 GSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNLVVPGWRLGWLLYVDP 270 (416)
T ss_dssp CCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTTSCGGGCCEEEEEECT
T ss_pred CcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHHccCCCcEEEEecchhhCCCCCceEEEEEeeCc
Confidence 99999 999999999999999999998752 2 11222222 23577889999887777 899999874
Q ss_pred --CCCccccccccCCccccCCCCCcchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCC
Q psy15216 1610 --PRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRL-ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRI 1686 (2602)
Q Consensus 1610 --~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~-~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~ 1686 (2602)
+++.+...... .....++++...+.++.++|+. ...++++..++++++++++.+.|.+ ++++.+..+..
T Consensus 271 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~--- 342 (416)
T 1bw0_A 271 HGNGPSFLEGLKR----VGMLVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGE-CIGLAPTMPRG--- 342 (416)
T ss_dssp TCSCHHHHHHHHH----HHHHHTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHTT-STTEEECCCCB---
T ss_pred hhhHHHHHHHHHH----HhccccCCCcHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHh-CCCCcccCCCe---
Confidence 55444321100 0001345677777777777773 2456788889999999999999987 67888764322
Q ss_pred CceEEEEEec------CCcHHHHHhc---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHH
Q psy15216 1687 PHNLNISFNF------IEGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDF 1757 (2602)
Q Consensus 1687 ~~~~~~~~~~------~~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~ 1757 (2602)
.....+.++. .+..++...| +||.+++|..|..+ +++||+++ ++.+++++
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~-------------------~~iRis~~--~~~e~l~~ 401 (416)
T 1bw0_A 343 AMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFHAP-------------------GFTRLTTT--RPVEVYRE 401 (416)
T ss_dssp TTEEEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGTCT-------------------TEEEEECC--SCHHHHHH
T ss_pred eEEEEEeCCHHHcCCCCCHHHHHHHHHHHCCEEEecccccCCC-------------------CeEEEEec--CCHHHHHH
Confidence 2233344542 2445565544 69999998877532 78999996 68999999
Q ss_pred HHHHHHHh
Q psy15216 1758 TIKLLKMK 1765 (2602)
Q Consensus 1758 li~~L~~~ 1765 (2602)
++++|.+.
T Consensus 402 ~l~~l~~~ 409 (416)
T 1bw0_A 402 AVERIKAF 409 (416)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999863
|
| >3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum} | Back alignment and structure |
|---|
Probab=99.90 E-value=2e-23 Score=270.51 Aligned_cols=330 Identities=16% Similarity=0.145 Sum_probs=230.4
Q ss_pred CCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCE
Q psy15216 1405 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKH 1484 (2602)
Q Consensus 1405 ~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~ 1484 (2602)
.++.+.+++.+.+...+..+ .....++|+.+++++|.+ ++++++|+|+|++.++.++. +++||+
T Consensus 15 ~~~~~~~a~~~~~~~~~~~~-----------~~~~~~l~~~la~~~~~~--~~i~~~sgt~al~~~l~~l~---~~~gd~ 78 (373)
T 3frk_A 15 IEYEIKFKFEEIYKRNWFIL-----------GDEDKKFEQEFADYCNVN--YCIGCGNGLDALHLILKGYD---IGFGDE 78 (373)
T ss_dssp HHHHHHHHHHHHHHHTCCSS-----------SHHHHHHHHHHHHHHTSS--EEEEESCHHHHHHHHHHHTT---CCTTCE
T ss_pred CCHHHHHHHHHHHHCCCccC-----------CchHHHHHHHHHHHhCCC--eEEEeCCHHHHHHHHHHHcC---CCCcCE
Confidence 35677888888776532211 135788999999999975 89999999999999999983 389999
Q ss_pred EEEcCCCCcchHHHHHHHHhCCcEEEEeccC-CCCCcChhHHHhhccCCceEEEEeccccccccccChHHHHHHhhhcCC
Q psy15216 1485 IITVQTEHKSVLDSIRKLENDGFRVTYLKPK-NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGV 1563 (2602)
Q Consensus 1485 Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~-~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~~ia~~~gi 1563 (2602)
|+++.++|+++...+... |+++++++.+ .++.+|++++++++++++++|+ ++||||.+.|+++|.++|++||+
T Consensus 79 Vi~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~---~~n~~G~~~~l~~i~~l~~~~~~ 152 (373)
T 3frk_A 79 VIVPSNTFIATALAVSYT---GAKPIFVEPDIRTYNIDPSLIESAITEKTKAII---AVHLYGQPADMDEIKRIAKKYNL 152 (373)
T ss_dssp EEEETTSCTHHHHHHHHH---SCEEEEECEETTTTEECGGGTGGGCCTTEEEEE---EECCTTCCCCHHHHHHHHHHHTC
T ss_pred EEECCCCcHHHHHHHHHc---CCEEEEEeccccccCcCHHHHHHhcCCCCeEEE---EECCCcCcccHHHHHHHHHHcCC
Confidence 999999999988887666 9999999987 4678999999999999999888 67789999999999999999999
Q ss_pred EEEEecccccCcccccCCCCC--ccEEEEccc--cccCCCc-eEEEEEecC-CCCccccccccCCccc--cCCCCCcchh
Q psy15216 1564 IFHCDAAQAVGKIDINIQNYK--VDLMSFSAH--KIYGPKG-IGALYIRRN-PRTRIEAQIHGGGHEY--GLRSGTLATH 1635 (2602)
Q Consensus 1564 ~vivD~a~~~g~~~~~l~~~~--~D~~v~S~~--K~~gp~G-~G~l~~~~~-~~~~l~~~~~g~~~~~--~~~~gt~~~~ 1635 (2602)
++|+|++|+.|.. ++...++ .|++++||| |.+|+.| .|+++.+++ +.+.+.+...++.... ....|...
T Consensus 153 ~li~D~a~~~g~~-~~~~~~~~~~d~~~~S~~~~K~l~~~g~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~-- 229 (373)
T 3frk_A 153 KLIEDAAQAHGSL-YKGMKVGSLGDAAGFSFYPAKNLGSLGDGGAVVTNDKDLAEKIKALSNYGSEKKYHHIYKGFNS-- 229 (373)
T ss_dssp EEEEECTTCTTCE-ETTEETTSSSSEEEEECCTTSSSCCSSSCEEEEESCHHHHHHHHHHHBTTCSBTTBCCSCCCBC--
T ss_pred EEEEECCcccCCE-ECCEeccccccEEEEeCcCCCccCccceeEEEEeCCHHHHHHHHHHHhcCcccCCccccccccC--
Confidence 9999999998875 4544455 799999966 8777633 577777643 4444444443332211 11112111
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecCCcHHHHHhc--CCEEEc
Q psy15216 1636 QIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDIAVS 1712 (2602)
Q Consensus 1636 ~~~al~~aL~~~-~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~v~ 1712 (2602)
.+..+.+++... ...+++..++.+++.+++.+.|.+ ++ +.+...+....+....+.+...+...+...| +||.++
T Consensus 230 ~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~ 307 (373)
T 3frk_A 230 RLDELQAGFLRVKLKYLDKWNEERRKIAQKYIAGINN-PN-VIIPVEADYAKHVWYTFVIRSEKRDELQKYLNNNGIGTL 307 (373)
T ss_dssp CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCCC-TT-EECCCCCTTEECCCSSEEEEESSHHHHHHHHHHTTBCCB
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-Cc-eEeccCCCCCceeeEEEEEEeCCHHHHHHHHHHCCCCcc
Confidence 112233333322 245677888889999999999977 55 6654332222222223344444667777777 799988
Q ss_pred cccccCCCCCChhHHHHHcCCC-------ccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1713 SGSACTSASLEPSYVLRALGCN-------DELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1713 ~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
++..+.. +..+.+ ..++.. +....+.+|+|+++++|.+||++++++|++
T Consensus 308 ~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~~~~~l~~ 363 (373)
T 3frk_A 308 IHYPIPI-HLQQAY--KDLGFKTGNFPIAEKIANEILSIPIWYGMKNEEIEYVIDKINA 363 (373)
T ss_dssp CSCSSCG-GGSGGG--GGGCCCTTSSHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHT
T ss_pred cCcCCcc-ccChHH--HhcCCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHH
Confidence 6542111 111111 112221 112237899999999999999999999997
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-22 Score=269.41 Aligned_cols=325 Identities=14% Similarity=0.107 Sum_probs=241.2
Q ss_pred CCCCHHHHHHHHHHHhh-c-cCCCCCccchhHHHHHHHHHHHHHHHHHHhC------CCCCcEEEeCCHHHHHHHHHHhh
Q psy15216 1403 TPIDPRVVDKMIPYLRV-Q-FGNPASRNHIYGWTAEKAIEKARNEVAQLIY------ADPREIIWTSGATESNNLAIKGA 1474 (2602)
Q Consensus 1403 ~~~~~~v~eal~~~l~~-~-~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g------~~~~~iv~t~gaT~al~~al~~l 1474 (2602)
.+.++.+.+++.+.+.. . .+++.. ....++|+.++++++ +++++|++|+|+|+|+++++.++
T Consensus 56 ~~~~~~v~~a~~~~~~~~~~~~y~~~----------~g~~~lr~~la~~~~~~~g~~~~~~~i~~t~g~t~al~~~~~~l 125 (437)
T 3g0t_A 56 LPAPQIGIETEIQKLREGVASIYPNL----------DGLPELKQEASRFAKLFVNIDIPARACVPTVGSMQGCFVSFLVA 125 (437)
T ss_dssp SCCCHHHHHHHHHHHHHTGGGSCCCT----------TCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCcCcCCCCC----------CChHHHHHHHHHHHHHhhCCCCCcccEEEeCCHHHHHHHHHHHH
Confidence 45678999999998874 2 233322 013567778888776 57789999999999999999987
Q ss_pred hhhhccCCC--EEEEcCCCCcchHHHHHHHHhCCcEEEEeccCC-CCCcChhHHHhhc-cCCceEEEEeccccccccccC
Q psy15216 1475 AHFYKKRGK--HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NGLITLSQLEEKI-CSDTILVSVMLVNNEIGVIQP 1550 (2602)
Q Consensus 1475 ~~~~~~~gd--~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~-~~~id~d~l~~~i-~~~t~lv~l~~~~n~tG~~~~ 1550 (2602)
. .+++|| +|+++.++|+++...+... |++++.++.++ ++.+|+++|++++ ++++++|++++|+||||.++|
T Consensus 126 ~--~~~~gd~~~Vl~~~p~~~~~~~~~~~~---g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~v~l~~p~nptG~~~~ 200 (437)
T 3g0t_A 126 N--RTHKNREYGTLFIDPGFNLNKLQCRIL---GQKFESFDLFEYRGEKLREKLESYLQTGQFCSIIYSNPNNPTWQCMT 200 (437)
T ss_dssp T--TSCTTCSCCEEEEESCCHHHHHHHHHH---TCCCEEEEGGGGCTTHHHHHHHHHHTTTCCCEEEEESSCTTTCCCCC
T ss_pred h--cCCCCCccEEEEeCCCcHhHHHHHHHc---CCEEEEEeecCCCCccCHHHHHHHHhcCCceEEEEeCCCCCCCCcCC
Confidence 4 126899 9999999999988877766 89999999864 4568999999999 789999999999999999998
Q ss_pred ---hHHHHHHhhhcCCEEEEecccccCc----ccc--------cCCC-CCccEEEEccccccCCCc--eEEEEEecCCCC
Q psy15216 1551 ---ILEIGELCRSKGVIFHCDAAQAVGK----IDI--------NIQN-YKVDLMSFSAHKIYGPKG--IGALYIRRNPRT 1612 (2602)
Q Consensus 1551 ---l~~I~~ia~~~gi~vivD~a~~~g~----~~~--------~l~~-~~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~ 1612 (2602)
+++|+++|++||+++|+|++|+... .++ .+.. .+.++++.|+||.+|++| +||+++++++++
T Consensus 201 ~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~ 280 (437)
T 3g0t_A 201 DEELRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPGEPLYQPSVANYTDNYILALSSSKAFSYAGQRIGVLMISGKLYE 280 (437)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECTTTTCCTTSCCCSTTSSCCCCCGGGTCSCEEEEEESTTTTSCGGGCCEEEEECHHHHH
T ss_pred HHHHHHHHHHHHHCCcEEEEEcchhhcccCCCcCcccccchhhccCCCCCcEEEEEcCccCCCCccceeEEEEECHHHhh
Confidence 6778999999999999999997522 221 2222 456799999999888777 899999877665
Q ss_pred -cccccccc----------CCccccCCCCCcchhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhcCCcEEE
Q psy15216 1613 -RIEAQIHG----------GGHEYGLRSGTLATHQIVGMGEAFRLARIE---MKEELKRILFLQKRLYNGLMESIEEIYI 1678 (2602)
Q Consensus 1613 -~l~~~~~g----------~~~~~~~~~gt~~~~~~~al~~aL~~~~~~---~~~~~~~~~~l~~~l~~~L~~~~~gl~i 1678 (2602)
.+..+..+ .........++++...+.++.++|+....+ +++.++++.++++++.+.|.+ . ++.+
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~ 358 (437)
T 3g0t_A 281 REYPDLEESFGRLRFGEALSSSALYALSSGATHSAQWGMAAMLKACNDGEYNFRDSVIEYGRKARIMKKMFLD-N-GFNI 358 (437)
T ss_dssp CBCGGGHHHHSCSBHHHHHHTTHHHHHHSSSCHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHT-T-TEEE
T ss_pred hhhhcccccccccchhHHHHHHHHhhhcCCCCHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHH-c-CCEE
Confidence 51110000 000011113466777777777777754433 788899999999999999988 4 8877
Q ss_pred e------CCCCCCCCceEEEEEecCCcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCC
Q psy15216 1679 N------GDMNNRIPHNLNISFNFIEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFT 1750 (2602)
Q Consensus 1679 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~ 1750 (2602)
. .++.. .....+.++..+..++...| +||.++++..|... ..+++|||++. .
T Consensus 359 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~L~~~gi~v~~~~~~~~~-----------------~~~~iRis~~~-~ 418 (437)
T 3g0t_A 359 VYDKDGNEPLAD--GFYFTVGYKGMDSSKLIEKFVRYGMCAITLKTTGSK-----------------RNEAMRICTSL-L 418 (437)
T ss_dssp SSCEETTEECCS--SSEEEEEETTCCHHHHHHHHHHTTEECEESTTTTCC-----------------CTTCEEEECSS-S
T ss_pred eccccCCCCCce--eEEEEEecCCCCHHHHHHHHHHcCeEEeeccccCCC-----------------CCCEEEEEEec-C
Confidence 6 22111 23344555555667777776 89999998877542 12679999994 4
Q ss_pred CHHHHHHHHHHHHH
Q psy15216 1751 TEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1751 t~edid~li~~L~~ 1764 (2602)
+.+++++++++|++
T Consensus 419 ~~e~i~~~~~~l~~ 432 (437)
T 3g0t_A 419 PESQFPDLEKRLQM 432 (437)
T ss_dssp CGGGHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 89999999999987
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.2e-22 Score=263.10 Aligned_cols=321 Identities=12% Similarity=0.002 Sum_probs=237.4
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCC---CCC-cEEEeCCHHHHHHHHHHhcccccc
Q psy15216 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA---DPR-EIIWTSGATESNNLAIKGAAHFYK 83 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~---~~~-~Iv~t~g~T~al~~~~~~l~~~~~ 83 (2602)
++|+.+.+++.+.+.....++... ...++.+.+.+++++.+|. +++ +|++|+|+++|+++++.++.
T Consensus 43 ~~~~~v~~a~~~~~~~~~~y~~~~------g~~~lr~~la~~l~~~~g~~~~~~~~~i~~t~g~~~al~~~~~~~~---- 112 (396)
T 3jtx_A 43 PTPKVITDALTASLHELEKYPLTA------GLPELRQACANWLKRRYDGLTVDADNEILPVLGSREALFSFVQTVL---- 112 (396)
T ss_dssp CCCHHHHHHHHHTGGGGGSCCCTT------CCHHHHHHHHHHHHHHTTTCCCCTTTSEEEESSHHHHHHHHHHHHC----
T ss_pred CCCHHHHHHHHHHhhhccCCCCCC------CcHHHHHHHHHHHHHhcCCCCCCCCCeEEEcCCcHHHHHHHHHHHh----
Confidence 678899999999886655555431 1123455555566666674 488 99999999999999999987
Q ss_pred cCC-----CEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCC-CccChHHHHhhccCCceEEEEecccCcccccccHHH
Q psy15216 84 KRG-----KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN-GLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILE 157 (2602)
Q Consensus 84 ~~g-----d~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~-~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~ 157 (2602)
++| |+|+++.+.|+++...+... |++++.++.+++ +.+|+++|++++++++++|++++|+||||.++|.++
T Consensus 113 ~~g~~~~~d~vl~~~p~~~~~~~~~~~~---g~~~~~v~~~~~g~~~d~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~ 189 (396)
T 3jtx_A 113 NPVSDGIKPAIVSPNPFYQIYEGATLLG---GGEIHFANCPAPSFNPDWRSISEEVWKRTKLVFVCSPNNPSGSVLDLDG 189 (396)
T ss_dssp CC---CCCCEEEEEESCCHHHHHHHHHT---TCEEEEEECCTTTCCCCGGGSCHHHHHTEEEEEEESSCTTTCCCCCHHH
T ss_pred CCCCccCCCEEEEcCCCcHhHHHHHHHc---CCEEEEeecCCCCCccCHHHHHHhhccCcEEEEEECCCCCCCCcCCHHH
Confidence 786 79999999999887766554 999999998554 468999999999889999999999999999998666
Q ss_pred ---HHHHHHhcCCEEEEecccccccc----cccC--------CCCCccEEEeccccccCCCC--cEEEEEecCCCCcccc
Q psy15216 158 ---IGELCRSKGVIFHCDAAQAVGKI----DINI--------QNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEA 220 (2602)
Q Consensus 158 ---I~~la~~~g~~livD~a~a~g~~----~~dl--------~~~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~ 220 (2602)
|+++|++||+++|+|++|+.... ++.. ...+.++++.|+||.+|++| +||++.++++++.+..
T Consensus 190 l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~ 269 (396)
T 3jtx_A 190 WKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQLGRSRQKLLMFTSLSKRSNVPGLRSGFVAGDAELLKNFLL 269 (396)
T ss_dssp HHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHHHHHHTTCCCTTEEEEEESTTTSSCGGGCCEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHcCCEEEEEccccccccCCCCCchHHhhhhhcccccCcEEEEeccccccCCcccceEEEEeCHHHHHHHHH
Confidence 88899999999999999975321 2211 02456799999999888777 7999998877766654
Q ss_pred eecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc
Q psy15216 221 QIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF 300 (2602)
Q Consensus 221 ~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~ 300 (2602)
.. ....++++.+...++.++++. ..++++.++++.++++++.+.|.+ . +.+..+. ...+..+.++.
T Consensus 270 ~~-------~~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~l~~~l~~-~--~~~~~~~---~~~~~~~~~~~ 335 (396)
T 3jtx_A 270 YR-------TYHGSAMSIPVQRASIAAWDD-EQHVIDNRRLYQEKFERVIPILQQ-V--FDVKLPD---ASFYIWLKVPD 335 (396)
T ss_dssp HH-------HHHTCCCCHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHTT-T--SCCCCCS---SSSEEEEECTT
T ss_pred HH-------hhcccCCCHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHh-c--CCccCCC---eeEEEEEECCC
Confidence 32 122356777777777777763 345778888899999999999976 2 2222222 12344455555
Q ss_pred cChhHHHHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 301 IEGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 301 ~~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
.+..++...| +||.+.+|..|.... .......+++||+++. +++++++++++|++
T Consensus 336 ~~~~~~~~~l~~~~gi~v~~g~~~~~~~-----------~~~~~~~~~iRis~~~--~~~~i~~~l~~l~~ 393 (396)
T 3jtx_A 336 GDDLAFARNLWQKAAIQVLPGRFLARDT-----------EQGNPGEGYVRIALVA--DVATCVKAAEDIVS 393 (396)
T ss_dssp SCHHHHHHHHHHHHCEECEEGGGGCCCC-----------TTCCTTTTEEEEECCS--CHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCEEEeCChHhCCcc-----------cccCCCCCeEEEEEcC--CHHHHHHHHHHHHH
Confidence 4666777666 499999999886520 0011234899999985 89999999999985
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-22 Score=265.02 Aligned_cols=312 Identities=15% Similarity=0.133 Sum_probs=227.9
Q ss_pred CCCCHHHHHHHHHHHhhc-cCCCCCccchhHHHHHHHHHHHHHHHHHHh----C--CCCCcEEEeCCHHHHHHHHHHhhh
Q psy15216 1403 TPIDPRVVDKMIPYLRVQ-FGNPASRNHIYGWTAEKAIEKARNEVAQLI----Y--ADPREIIWTSGATESNNLAIKGAA 1475 (2602)
Q Consensus 1403 ~~~~~~v~eal~~~l~~~-~~np~~~~~~~~~~~~~~~~~lr~~ia~~~----g--~~~~~iv~t~gaT~al~~al~~l~ 1475 (2602)
.+.++.+.+++.+.+... .+++. .....++|+.+++++ | +++++|++|+|+|+|++.++.++.
T Consensus 43 ~~~~~~v~~a~~~~~~~~~~~y~~----------~~g~~~lr~~ia~~~~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~ 112 (391)
T 3h14_A 43 TGAPRGAVEALAKSLETDALGYTV----------ALGLPALRQRIARLYGEWYGVDLDPGRVVITPGSSGGFLLAFTALF 112 (391)
T ss_dssp SCSCHHHHHHHHHHHC--------------------CCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHhcCCCCCCC----------CCChHHHHHHHHHHHHHHhCCCCCHHHEEEecChHHHHHHHHHHhc
Confidence 356788999998888641 11111 112456677777766 3 577899999999999999999987
Q ss_pred hhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCC--CCcChhHHHhhccCCceEEEEeccccccccccC---
Q psy15216 1476 HFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN--GLITLSQLEEKICSDTILVSVMLVNNEIGVIQP--- 1550 (2602)
Q Consensus 1476 ~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~--~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~--- 1550 (2602)
++||+|+++.|+|+++...++.. |++++.++.+++ +.+|+++++++ ++++|++++|+||||.++|
T Consensus 113 ----~~gd~vl~~~p~~~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~~~l~~~---~~~~v~i~~p~nptG~~~~~~~ 182 (391)
T 3h14_A 113 ----DSGDRVGIGAPGYPSYRQILRAL---GLVPVDLPTAPENRLQPVPADFAGL---DLAGLMVASPANPTGTMLDHAA 182 (391)
T ss_dssp ----CTTCEEEEEESCCHHHHHHHHHT---TCEEEEEECCGGGTTSCCHHHHTTS---CCSEEEEESSCTTTCCCCCHHH
T ss_pred ----CCCCEEEEcCCCCccHHHHHHHc---CCEEEEeecCcccCCCCCHHHHHhc---CCeEEEECCCCCCCCccCCHHH
Confidence 89999999999999987666554 999999998763 46899999987 8999999999999999999
Q ss_pred hHHHHHHhhhcCCEEEEecccccCcc---cccCCC-CCccEEEEccccccCCCc--eEEEEEecCCCCccccccccCCcc
Q psy15216 1551 ILEIGELCRSKGVIFHCDAAQAVGKI---DINIQN-YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHE 1624 (2602)
Q Consensus 1551 l~~I~~ia~~~gi~vivD~a~~~g~~---~~~l~~-~~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~~g~~~~ 1624 (2602)
+++|+++|++||+++|+|++|+.... +..... .+.++++.|+||.+|++| +||+++++++++.+.....
T Consensus 183 l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~----- 257 (391)
T 3h14_A 183 MGALIEAAQAQGASFISDEIYHGIEYEAKAVTALELTDECYVINSFSKYFSMTGWRVGWMVVPEDQVRVVERIAQ----- 257 (391)
T ss_dssp HHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCSSSEEEEESSSTTCCTTSCCEEEECCGGGHHHHHHHHH-----
T ss_pred HHHHHHHHHHcCCEEEEECcchhcccCCCCcChhhcCCCEEEEEechhccCCccceeEEEEeCHHHHHHHHHHHh-----
Confidence 88899999999999999999874321 222222 245688889999888777 7999998876665543321
Q ss_pred ccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEe--cCCcHHH
Q psy15216 1625 YGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN--FIEGESL 1702 (2602)
Q Consensus 1625 ~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~--~~~~~~~ 1702 (2602)
...++++...+.++.+++. ....+++.++++.++++++.+.|.+ . ++....++.. .....+.++ ..+..++
T Consensus 258 --~~~~~~~~~~~~a~~~~l~-~~~~~~~~~~~~~~~~~~l~~~l~~-~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 330 (391)
T 3h14_A 258 --NMFICAPHASQVAALAALD-CDAELQANLDVYKANRKLMLERLPK-A-GFTRIAPPDG--AFYVYADVSDLTDDSRAF 330 (391)
T ss_dssp --HTTCCCCHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHHHHH-H-TCCCBCCCCB--TTEEEEECTTTCSCHHHH
T ss_pred --hhccCCCHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHHH-c-CCCcccCCCe--eEEEEEecCccCCCHHHH
Confidence 1234566666666667776 3456788889999999999999987 3 3222212221 122333444 2355667
Q ss_pred HHhc---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1703 LMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1703 ~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
...| +||.+++|..|... ...+++|++++. +.+++++++++|++
T Consensus 331 ~~~l~~~~gi~v~~g~~~~~~----------------~~~~~iRis~~~--~~~~i~~~l~~l~~ 377 (391)
T 3h14_A 331 AAEILEKAGVAVTPGLDFDPE----------------RGAGTLRFSYAR--ATADIEEGLDRLEA 377 (391)
T ss_dssp HHHHHHHHCEECEEGGGTCTT----------------TGGGEEEEECCS--CHHHHHHHHHHHHH
T ss_pred HHHHHHHCCEEEcCchhhCCC----------------CCCCeEEEEecC--CHHHHHHHHHHHHH
Confidence 6664 49999999988652 113799999986 78999999999987
|
| >1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.7e-22 Score=263.57 Aligned_cols=334 Identities=13% Similarity=0.104 Sum_probs=220.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhccc
Q psy15216 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAH 80 (2602)
Q Consensus 1 Ld~a~~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~ 80 (2602)
.|+.++++..+.+.+++.. +.++.. .|.+++...+..+++++++++++|.+ +.++++|+++|+++++.++.
T Consensus 31 p~~~~~~~~~~~~~~~~~~-----~~~~~~-~~~~~r~~~~~~~~l~~~la~~~g~~--~~i~~~sG~~a~~~~l~~~~- 101 (398)
T 1gc0_A 31 PVYQTATFTFPTVEYGAAC-----FAGEQA-GHFYSRISNPTLNLLEARMASLEGGE--AGLALASGMGAITSTLWTLL- 101 (398)
T ss_dssp CBCCCSCBCCC---------------------------CCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHC-
T ss_pred CccCCCccccCCHHHHHHh-----hcCCcC-CCcccCCCChHHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHHh-
Confidence 3677788777777666542 223322 34444445567899999999999986 55666666899999999987
Q ss_pred ccccCCCEEEEcCCCCcccHHHHHHH-HhCCcEEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHH
Q psy15216 81 FYKKRGKHIITVQTEHKSVLDSIRKL-ENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIG 159 (2602)
Q Consensus 81 ~~~~~gd~Vlv~~~~~~s~~~~~~~~-~~~G~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~ 159 (2602)
++||+|+++.+.|+++...+..+ ...|++++.++.+ |+++++++++++|++|++++|+||||.+.|+++|.
T Consensus 102 ---~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~ 173 (398)
T 1gc0_A 102 ---RPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDMA-----DLQALEAAMTPATRVIYFESPANPNMHMADIAGVA 173 (398)
T ss_dssp ---CTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEECTT-----CHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHH
T ss_pred ---cCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCC-----CHHHHHHhcCCCCeEEEEECCCCCCcccccHHHHH
Confidence 79999999999999988877544 5679999999853 89999999999999999999999999999999999
Q ss_pred HHHHhcCCEEEEecccccccccccCCCCCccEEEeccccccCCCC---cEEEEEecCCCC-cccceecCCCccccccccC
Q psy15216 160 ELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKG---IGALYIRRNPRT-RIEAQIHGGGHEYGLRSGT 235 (2602)
Q Consensus 160 ~la~~~g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K~~Gp~G---~G~l~~~~~~~~-~l~~~~~g~~~~~~~~~gt 235 (2602)
++|++||+++|+|++|+.+.....+ .+++|+++.|+||++|.+| .|+++++++.+. .+.+...+ +..++
T Consensus 174 ~l~~~~~~~li~D~~~~~~~~~~~~-~~~~d~~~~S~sK~~~~~~~~~~G~l~~~~~~~~~~~~~~~~~------~~~~~ 246 (398)
T 1gc0_A 174 KIARKHGATVVVDNTYCTPYLQRPL-ELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKD------MTGAV 246 (398)
T ss_dssp HHHGGGTCEEEEECTTTHHHHCCGG-GGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHH------HTCCC
T ss_pred HHHHHcCCEEEEECCCcccccCCch-hhCceEEEECCccccCCCCCCeEEEEEEChHHHHHHHHHHhhc------cCCCC
Confidence 9999999999999999877654333 3578999999999777544 599999876544 34332211 12345
Q ss_pred cchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCce--------------EEeCCCCCCCCceEEEEEccc
Q psy15216 236 LATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEI--------------YINGDMNNRIPHNLNISFNFI 301 (2602)
Q Consensus 236 ~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~--------------~l~~~~~~~~~~~~~~~~~~~ 301 (2602)
.+....+++..+++.. ....++..++++.+.+.|.+ .+.+ .++.+.....+.++.+.++..
T Consensus 247 ~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~l~~~L~~-~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 321 (398)
T 1gc0_A 247 LSPHDAALLMRGIKTL----NLRMDRHCANAQVLAEFLAR-QPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGG 321 (398)
T ss_dssp CCHHHHHHHHHHHTTH----HHHHHHHHHHHHHHHHHHHT-CTTEEEEEEC----------------CCTTEEEEEETTH
T ss_pred CCHHHHHHHHhccchH----HHHHHHHHHHHHHHHHHHhc-CCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEEEECCC
Confidence 6666555555566533 34444555556666666655 3332 222221112345556666532
Q ss_pred --ChhHHHHHhCCeEEcc---ccc------CCCC--CCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 302 --EGESLLMAIKDIAVSS---GSA------CTSA--SLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 302 --~~~~~~~~L~gI~v~~---g~~------~~~~--~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
....++.. .++.++. |.. |... ...++..+..+|++ +++||||++.++++++++.+.++|++
T Consensus 322 ~~~~~~~l~~-~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~----~~~iRis~g~~~~~~~i~~l~~al~~ 396 (398)
T 1gc0_A 322 IGAGRRFMNA-LQLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGIS----EGLVRLSVGLEDIDDLLADVQQALKA 396 (398)
T ss_dssp HHHHHHHHHH-CSSSEECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCC----TTEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-CCCceeccCCCCcceeeecccccccccCCHHHHHhcCCC----CCeEEEEeCcCCHHHHHHHHHHHHHh
Confidence 12233333 3444433 422 2211 12345666777876 38999999999999999999999985
|
| >2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=6.7e-22 Score=260.62 Aligned_cols=317 Identities=15% Similarity=0.148 Sum_probs=239.8
Q ss_pred CCCHHHHHHHHHHHhhc-cCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCC
Q psy15216 1404 PIDPRVVDKMIPYLRVQ-FGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRG 1482 (2602)
Q Consensus 1404 ~~~~~v~eal~~~l~~~-~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~g 1482 (2602)
..++.+.+++.+.+... .+++.+ ...........++++++++++|.+ +.++++++++|+..++.++. ++|
T Consensus 78 ~~~~~v~~a~~~~~~~~~~~~~~~---~~~~G~~~~~~~l~~~la~~~g~~--~~i~~~sGs~a~~~al~~l~----~~g 148 (427)
T 2w8t_A 78 TFDPDVIAAGKEALEKFGSGTCGS---RMLNGTFHDHMEVEQALRDFYGTT--GAIVFSTGYMANLGIISTLA----GKG 148 (427)
T ss_dssp GGCHHHHHHHHHHHHHHCSCCCSC---TTTTCCCHHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHHS----CTT
T ss_pred CCCHHHHHHHHHHHHHhCCCCccc---ccccCCcHHHHHHHHHHHHHhCCC--ceEEecCcHHHHHHHHHHhc----CCC
Confidence 46788999999988762 223221 111222356788999999999975 66777788889999888876 899
Q ss_pred CEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccC----CceEEEEeccccccccccChHHHHHHh
Q psy15216 1483 KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS----DTILVSVMLVNNEIGVIQPILEIGELC 1558 (2602)
Q Consensus 1483 d~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~----~t~lv~l~~~~n~tG~~~~l~~I~~ia 1558 (2602)
|.|+++.+.|+++...+... |++++.++. .|+++|++++.+ ++++|++++++||||.+.|+++|.++|
T Consensus 149 d~vl~~~~~h~~~~~~~~~~---g~~~~~~~~-----~d~~~le~~l~~~~~~~~~~v~~~~~~n~tG~~~~l~~l~~l~ 220 (427)
T 2w8t_A 149 EYVILDADSHASIYDGCQQG---NAEIVRFRH-----NSVEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVA 220 (427)
T ss_dssp CEEEEETTCCHHHHHHHHHS---CSEEEEECT-----TCHHHHHHHHHTSCSSSCEEEEEESEETTTTEECCHHHHHHHH
T ss_pred CEEEECCcccHHHHHHHHHc---CCeeEEeCC-----CCHHHHHHHHHhccCCCCeEEEEcCCCCCCCCccCHHHHHHHH
Confidence 99999999999988776554 889888863 689999999976 789999999999999999999999999
Q ss_pred hhcCCEEEEecccccCccc---------ccCCCCCccEEEEccccccCCCceEEEEEecCCCCccccccccCCccccCCC
Q psy15216 1559 RSKGVIFHCDAAQAVGKID---------INIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRS 1629 (2602)
Q Consensus 1559 ~~~gi~vivD~a~~~g~~~---------~~l~~~~~D~~v~S~~K~~gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~ 1629 (2602)
++||+++|+|++|+.+... +++. .++|++++|+||.+|++| ||+++++++++.+.+.... ....
T Consensus 221 ~~~g~~li~Dea~~~~~~~~~g~~~~~~~~~~-~~~di~~~s~sK~~g~~g-G~v~~~~~l~~~l~~~~~~-----~~~~ 293 (427)
T 2w8t_A 221 KKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLE-GQIDFVVGTFSKSVGTVG-GFVVSNHPKFEAVRLACRP-----YIFT 293 (427)
T ss_dssp HHTTCEEEEECTTTTTTSSTTSCCHHHHTTCT-TCCSEEEEESSSTTCSCC-EEEEECCTTGGGGGGTCHH-----HHSS
T ss_pred HHcCCEEEEECCccccccCCCCCchHhhcCCC-cCCcEEEecchhhhccCC-CEEEeCHHHHHHHHHhccc-----cccc
Confidence 9999999999999876543 3332 257999999999888888 9999998887776543110 0113
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEec-CCcHHHHHhc--
Q psy15216 1630 GTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGESLLMAI-- 1706 (2602)
Q Consensus 1630 gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~L-- 1706 (2602)
++.+..+++++.++|+... .+++.++++.++++++++.|.+ . ++.+..++ . ...+..+.++. .+..++...|
T Consensus 294 ~~~~~~~~aa~~~al~~~~-~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~-~-~~~~~~~~~~~~~~~~~l~~~L~~ 368 (427)
T 2w8t_A 294 ASLPPSVVATATTSIRKLM-TAHEKRERLWSNARALHGGLKA-M-GFRLGTET-C-DSAIVAVMLEDQEQAAMMWQALLD 368 (427)
T ss_dssp CCCCHHHHHHHHHHHHHHT-SCHHHHHHHHHHHHHHHHHHHH-H-TCEESCSS-C-CSSEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHH-c-CCcccCCC-C-CCCEEEEEECCHHHHHHHHHHHHH
Confidence 5667777777777887643 2577888999999999999988 3 67765332 1 12334444432 2344566555
Q ss_pred CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1707 KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1707 ~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
+||.+.++..+..+ ...+++|++++.++|.+|+++++++|++.
T Consensus 369 ~Gi~v~~~~~~~~~----------------~~~~~lRi~~~~~~t~e~i~~~~~~l~~~ 411 (427)
T 2w8t_A 369 GGLYVNMARPPATP----------------AGTFLLRCSICAEHTPAQIQTVLGMFQAA 411 (427)
T ss_dssp TTEECEEECTTTSC----------------TTCEEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred CCeEEeeeCCCCCC----------------CCCeEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 79999988755432 11368999999999999999999999974
|
| >3h0x_A 78 kDa glucose-regulated protein homolog; structural genomics, APC89502.3, peptide binding, chaperone, BIP, PSI-2; 1.92A {Saccharomyces cerevisiae} PDB: 1ckr_A 7hsc_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2e-23 Score=226.91 Aligned_cols=138 Identities=41% Similarity=0.572 Sum_probs=127.9
Q ss_pred eeccccccceEeeeccEEEEEEecCCCCCCCcEEEEEeccccccceeeeEeecCccccccCceeeeeEecCCCCCCCCcc
Q psy15216 1010 LLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRA 1089 (2602)
Q Consensus 1010 ~~dv~~~~~gi~~~~~~~~~ii~~~t~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~i~~~~~g~~ 1089 (2602)
+.||+|+|||+++.+|.|.+|||||++||+++++.|+|..|+|+.+.|.|||||+..+.+|..||+|.|+|+||+|+|.+
T Consensus 2 ~~Dv~p~slGi~~~gg~~~~lI~rnt~iP~~k~~~f~t~~d~Q~~v~i~VyqGe~~~~~dn~~LG~f~l~gipp~p~G~~ 81 (152)
T 3h0x_A 2 NADVNALTLGIETTGGVMTPLIKRNTAIPTKKSQIFSTAVDNQPTVMIKVYEGERAMSKDNNLLGKFELTGIPPAPRGVP 81 (152)
T ss_dssp -CCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEECCSSTTCCCEEEEEEESSCSBGGGSEEEEEEEECCCCCCCTTCS
T ss_pred ccceeccEEEEEEcCCEEEEEEECcCccCEEEEEEEEeCCCCcceeeeeEEEcCccccccCcEEEEEEEeCCCCCCCCCc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEECCCeeEEEEEEEecCCceEEEEEecC-CCCCHHHHHhhhhccccCCCchhHHH
Q psy15216 1090 RIKVTYQVDADGLLSIFAYEKISGKKKFITIKPF-YNMNLDEIKNGAIFNENSGISLCDAL 1149 (2602)
Q Consensus 1090 ~i~v~f~~d~~g~l~v~a~~~~~g~~~~~~~~~~-~~l~~~~i~~~~~~~~~~g~~~~~~~ 1149 (2602)
+|+|+|+||.||+|+|+|.++.||++..++|... .+||++||++|+ ++++-+..-+..
T Consensus 82 ~I~Vtf~iD~nGiL~V~a~d~~tg~~~~i~I~~~~~~ls~~ei~~~~--~~a~~~~~~D~~ 140 (152)
T 3h0x_A 82 QIEVTFALDANGILKVSATDKGTGKSESITITNDKGRLTQEEIDRMV--EEAEKFASEDAS 140 (152)
T ss_dssp CEEEEEEECTTSEEEEEEEETTTCCEEEEEEECCTTCCCHHHHHHHH--HHHHHTHHHHHH
T ss_pred eEEEEEEEcCCCEEEEEEEEcCCCcEeEEEEecCCCCCCHHHHHHHH--HHHHHHHHhhHH
Confidence 9999999999999999999999999999999988 569999999986 666555444433
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.8e-22 Score=266.92 Aligned_cols=316 Identities=15% Similarity=0.097 Sum_probs=235.0
Q ss_pred CCHHHHHHHHHHHhhh----cCCCCCCCcchhhhHHHHHHHHHHHHHHHh----CC-CCCcEEEeCCHHHHHHHHHHhcc
Q psy15216 9 IDPRVVDKMIPYLRVQ----FGNPASRNHIYGWTAEKAIEKARNEVAQLI----YA-DPREIIWTSGATESNNLAIKGAA 79 (2602)
Q Consensus 9 ~p~~v~~a~~~~l~~~----~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~----g~-~~~~Iv~t~g~T~al~~~~~~l~ 79 (2602)
+++.+.+++.+.+... ..++.. ....++|+++++++ |+ ++++|++|+|+++|+++++.++.
T Consensus 92 p~~~v~~a~~~~l~~~~~~~~~Y~~~----------~g~~~lr~~ia~~~~~~~g~~~~~~v~~t~G~~~al~~~~~~l~ 161 (448)
T 3aow_A 92 PKEIIRDILVEIMEKYADKALQYGTT----------KGFTPLRETLMKWLGKRYGISQDNDIMITSGSQQALDLIGRVFL 161 (448)
T ss_dssp CHHHHHHHHHHHHHHSHHHHHSCCCT----------TCCHHHHHHHHHHHHHHHCCCTTSEEEEESSHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhhhHHHhCCCCC----------CCcHHHHHHHHHHHHHhcCcCChhhEEEeCcHHHHHHHHHHHHc
Confidence 5667888888877541 222211 12356677777777 98 77899999999999999999987
Q ss_pred cccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhcc----C--CceEE-EEecccCccccc
Q psy15216 80 HFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKIC----S--DTILV-SVMLVNNEIGVI 152 (2602)
Q Consensus 80 ~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~----~--~tklv-~i~~~~npTG~~ 152 (2602)
++||+|+++.|.|+++...+.. .|++++.++.++++ +|+++|+++++ + ++++| ++++++||||.+
T Consensus 162 ----~~Gd~Vlv~~p~y~~~~~~~~~---~g~~~~~v~~~~~g-~d~~~L~~~l~~~~~~~~~~k~v~~~~~~~NPtG~~ 233 (448)
T 3aow_A 162 ----NPGDIVVVEAPTYLAALQAFNF---YEPQYIQIPLDDEG-MKVEILEEKLKELKSQGKKVKVVYTVPTFQNPAGVT 233 (448)
T ss_dssp ----CTTCEEEEEESCCHHHHHHHHT---TCCEEEEEEEETTE-ECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCC
T ss_pred ----CCCCEEEEeCCChHHHHHHHHH---cCCEEEEeccCCCC-CCHHHHHHHHhhhhccCCCCeEEEECCCCCCCcCCC
Confidence 7999999999999997766654 49999999987665 99999999997 5 78987 579999999999
Q ss_pred ccH---HHHHHHHHhcCCEEEEecccccccc----cc---cCCCCCccEEEeccccccCCCC--cEEEEEecCCCCcccc
Q psy15216 153 QPI---LEIGELCRSKGVIFHCDAAQAVGKI----DI---NIQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEA 220 (2602)
Q Consensus 153 ~~l---~~I~~la~~~g~~livD~a~a~g~~----~~---dl~~~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~ 220 (2602)
+|. ++|.++|++||+++|+|++|+.... .. .+...+.++++.|++|.+| +| +||+++++++++.+..
T Consensus 234 ~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~~~~~~~~~~~vi~~~S~SK~~~-~GlriG~v~~~~~l~~~l~~ 312 (448)
T 3aow_A 234 MNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALDNEGRVIYLGTFSKILA-PGFRIGWMVGDPGIIRKMEI 312 (448)
T ss_dssp CCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCCCTGGGCTTSCEEEEEESTTTTC-GGGCCEEEEECHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHhcCCCCCEEEEccchhhcc-ccccEEEEEeCHHHHHHHHH
Confidence 984 5889999999999999999976432 11 2222345789999999888 77 7999999887776654
Q ss_pred eecCCCccccccccCcchhHHHHHHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHhhccC-ceEEeCCCCCCCCceEEEE
Q psy15216 221 QIHGGGHEYGLRSGTLATHQIVGMGEAFRL--ARIEMKEELKRILFLQKRLYNGLMESIE-EIYINGDMNNRIPHNLNIS 297 (2602)
Q Consensus 221 ~~~g~~~~~~~~~gt~~~~~~~al~~al~~--~~~~~~~~~~~~~~l~~~l~~~L~~~~~-g~~l~~~~~~~~~~~~~~~ 297 (2602)
.... ...+++.+...++.++|+. ...++++.+++++++++++.+.|.+.+| ++.+..+.. ..++.+.
T Consensus 313 ~~~~-------~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~p~~---g~~~~v~ 382 (448)
T 3aow_A 313 AKQS-------TDLCTNVFGQVVAWRYVDGGYLEKHIPEIRKFYKPRRDAMLEALEEFMPEGVKWTKPEG---GMFIWVT 382 (448)
T ss_dssp HHHH-------HHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEECCCSB---SSEEEEE
T ss_pred HHHH-------hcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEeCCCc---cEEEEEE
Confidence 3211 1224466666666677763 2455778888888999999999987456 677764432 2344455
Q ss_pred Ecc-cChhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 298 FNF-IEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 298 ~~~-~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
++. .+..++...| +||.+.+|..|.+. ....+++|++++. .++++++.++++|++.
T Consensus 383 ~~~~~~~~~l~~~l~~~gV~v~pg~~f~~~---------------~~~~~~iRls~~~-~~~e~i~~~~~~L~~~ 441 (448)
T 3aow_A 383 LPDGIDSKKMLERAIKKGVAYVPGEAFYAH---------------RDVKNTMRLNFTY-VDEDKIMEGIKRLAET 441 (448)
T ss_dssp CSTTCCHHHHHHHHHHTTEECEEGGGGSTT---------------CCCCSEEEEECSS-SCTHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHCCcEEEcchhhcCC---------------CCCCCEEEEEeCC-CCHHHHHHHHHHHHHH
Confidence 542 4566777766 79999999877542 0123789999986 4889999999999864
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.8e-22 Score=267.55 Aligned_cols=318 Identities=14% Similarity=0.121 Sum_probs=234.3
Q ss_pred CCCHHHHHHHHHHHhh--hcCCCCCCCcchhhhHHHHHHHHHHHHHHHh----C--CCCCcEEEeCCHHHHHHHHHHhcc
Q psy15216 8 PIDPRVVDKMIPYLRV--QFGNPASRNHIYGWTAEKAIEKARNEVAQLI----Y--ADPREIIWTSGATESNNLAIKGAA 79 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~--~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~----g--~~~~~Iv~t~g~T~al~~~~~~l~ 79 (2602)
++|+.+.+++.+.+.. ...++.. . ...++|+++++++ | .++++|++|+|+++|+.+++.++.
T Consensus 70 ~~~~~v~~a~~~~~~~~~~~~Y~~~------~----g~~~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~~al~~~~~~l~ 139 (447)
T 3b46_A 70 SPPQFAIKEAQKALDIPMVNQYSPT------R----GRPSLINSLIKLYSPIYNTELKAENVTVTTGANEGILSCLMGLL 139 (447)
T ss_dssp CCCHHHHHHHHHHTTSGGGGSCCCT------T----CCHHHHHHHHHHHTTTTTSCCCGGGEEEESHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHhCcCCCCCCCC------C----CCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHHc
Confidence 4678999999988764 1222211 1 1345566666665 5 356789999999999999999987
Q ss_pred cccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCC------------CCccChHHHHhhccCCceEEEEecccC
Q psy15216 80 HFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN------------NGLITLSQLEEKICSDTILVSVMLVNN 147 (2602)
Q Consensus 80 ~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~------------~~~ld~e~l~~~i~~~tklv~i~~~~n 147 (2602)
++||+|+++.|.|+++...+... |++++.++.++ ++.+|+++|++++++++++|++++|+|
T Consensus 140 ----~~gd~Vlv~~p~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~l~~p~n 212 (447)
T 3b46_A 140 ----NAGDEVIVFEPFFDQYIPNIELC---GGKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAITSKTKAVIINTPHN 212 (447)
T ss_dssp ----CTTCEEEEEESCCTTHHHHHHHT---TCEEEEEEEECCGGGGTSCBCSTTSEECHHHHHTTCCTTEEEEEEESSCT
T ss_pred ----CCCCEEEEeCCCchhHHHHHHHc---CCEEEEEeCCCccccccccccccCcccCHHHHHHhhccCCeEEEEeCCCC
Confidence 79999999999999987766554 99999998754 357999999999999999999999999
Q ss_pred ccccccc---HHHHHHHHHhcCCEEEEecccccccc---cccCC-----CCCccEEEeccccccCCCC--cEEEEE-ecC
Q psy15216 148 EIGVIQP---ILEIGELCRSKGVIFHCDAAQAVGKI---DINIQ-----NYKVDLMSFSAHKIYGPKG--IGALYI-RRN 213 (2602)
Q Consensus 148 pTG~~~~---l~~I~~la~~~g~~livD~a~a~g~~---~~dl~-----~~~~D~~~~S~~K~~Gp~G--~G~l~~-~~~ 213 (2602)
|||.++| +++|+++|++||+++|+|++|+.... ...+. ..+.++++.|+||.+|++| +||+++ +++
T Consensus 213 ptG~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~riG~~~~~~~~ 292 (447)
T 3b46_A 213 PIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTDSFTRIATLSPEIGQLTLTVGSAGKSFAATGWRIGWVLSLNAE 292 (447)
T ss_dssp TTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCHHHHTTEEEEEEHHHHTTCTTSCCEEEECSCHH
T ss_pred CCCcccCHHHHHHHHHHHHHcCcEEEEeccchhcccCCCCcCHHHcCCCCCCcEEEEecCchhcCCcchhhEEEEeCCHH
Confidence 9999985 78899999999999999999975321 11221 2357899999999988888 899999 877
Q ss_pred CCCcccceecCCCccccccccCcchhHHHHHHHHHHHH--HHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCC
Q psy15216 214 PRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLA--RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIP 291 (2602)
Q Consensus 214 ~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~--~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~ 291 (2602)
+++.+.... ....++.+.+...++.++|+.. ..++++.+++++++++++.+.|.+ . |+.+..+.. .
T Consensus 293 l~~~l~~~~-------~~~~~~~~~~~~~a~~~aL~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~---g 360 (447)
T 3b46_A 293 LLSYAAKAH-------TRICFASPSPLQEACANSINDALKIGYFEKMRQEYINKFKIFTSIFDE-L-GLPYTAPEG---T 360 (447)
T ss_dssp HHHHHHHHH-------HHHTSSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH-H-TCCEECCSB---S
T ss_pred HHHHHHHHH-------hhccCCCChHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHH-C-CCeecCCCe---e
Confidence 766654322 1123455666677777888754 455788899999999999999987 3 666654432 2
Q ss_pred ceEEEEEccc----------------ChhHHHHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCC
Q psy15216 292 HNLNISFNFI----------------EGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGR 352 (2602)
Q Consensus 292 ~~~~~~~~~~----------------~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~ 352 (2602)
....+.++.. +..++...| +||.+.+|..|.... ......+++||+++.
T Consensus 361 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~------------~~~~~~~~iRls~~~ 428 (447)
T 3b46_A 361 YFVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYIKE------------HEKAAENLLRFAVCK 428 (447)
T ss_dssp SEEEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGSCGG------------GGGGGTTEEEEECCS
T ss_pred EEEEEecccccCccccccccccccCCCHHHHHHHHHHhCCEEEECchHhCCCC------------ccCCCCCEEEEEEeC
Confidence 2334444431 233566555 699999988775320 000114799999984
Q ss_pred CCCHHHHHHHHHHHHh
Q psy15216 353 FTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 353 ~~t~edid~li~~L~~ 368 (2602)
+++++++++++|++
T Consensus 429 --~~e~l~~~~~~l~~ 442 (447)
T 3b46_A 429 --DDAYLENAVERLKL 442 (447)
T ss_dssp --CHHHHHHHHHHGGG
T ss_pred --CHHHHHHHHHHHHH
Confidence 89999999999985
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=9.3e-23 Score=269.03 Aligned_cols=323 Identities=15% Similarity=0.111 Sum_probs=235.7
Q ss_pred CCCHHHHHHHHHHHhhh---cCCCCCCCcchhhhHHHHHHHHHHHHHHHhC--CCC-CcEEEeCCHHHHHHHHHHhcccc
Q psy15216 8 PIDPRVVDKMIPYLRVQ---FGNPASRNHIYGWTAEKAIEKARNEVAQLIY--ADP-REIIWTSGATESNNLAIKGAAHF 81 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~---~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g--~~~-~~Iv~t~g~T~al~~~~~~l~~~ 81 (2602)
++|+.+.+++.+.+... ..++.. ....++.+.+.+++.+.+| +++ ++|++|+|+++|+++++.++.
T Consensus 41 ~~~~~v~~a~~~~~~~~~~~~~y~~~------~g~~~lr~~la~~~~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~~~-- 112 (422)
T 3fvs_A 41 PPPDFAVEAFQHAVSGDFMLNQYTKT------FGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALV-- 112 (422)
T ss_dssp CCCHHHHHHHHHHHHSCGGGGSCCCT------TCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHHHhCCCccCCCCCC------CCCHHHHHHHHHHHHHhhCCCCCCCCcEEEECChHHHHHHHHHHHc--
Confidence 57899999999988752 122221 1112334444444444455 455 689999999999999999987
Q ss_pred cccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCC------------CCccChHHHHhhccCCceEEEEecccCcc
Q psy15216 82 YKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN------------NGLITLSQLEEKICSDTILVSVMLVNNEI 149 (2602)
Q Consensus 82 ~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~------------~~~ld~e~l~~~i~~~tklv~i~~~~npT 149 (2602)
++||+|+++.+.|+++...+... |++++.++.++ ++.+|++++++++++++++|++++|+|||
T Consensus 113 --~~gd~vl~~~p~~~~~~~~~~~~---g~~~~~~~~~~~~~~~G~~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~npt 187 (422)
T 3fvs_A 113 --DEGDEVIIIEPFFDCYEPMTMMA---GGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTSRTKALVLNTPNNPL 187 (422)
T ss_dssp --CTTCEEEEEESCCTTHHHHHHHT---TCEEEEEECBCCCCCSSSCCBGGGSBCCHHHHHTTCCTTEEEEEEESSCTTT
T ss_pred --CCCCEEEEcCCCchhhHHHHHHc---CCEEEEEecccccccccccccccCCCCCHHHHHhhcCCCceEEEECCCCCCC
Confidence 79999999999999987766554 99999998875 34689999999999999999999999999
Q ss_pred ccccc---HHHHHHHHHhcCCEEEEecccccc----cccccCCC----CCccEEEeccccccCCCC--cEEEEEecCCCC
Q psy15216 150 GVIQP---ILEIGELCRSKGVIFHCDAAQAVG----KIDINIQN----YKVDLMSFSAHKIYGPKG--IGALYIRRNPRT 216 (2602)
Q Consensus 150 G~~~~---l~~I~~la~~~g~~livD~a~a~g----~~~~dl~~----~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~ 216 (2602)
|.++| +++|+++|++||+++|+|++|+.. ..+.++.. .+.++++.|+||.+|++| +||+++++++++
T Consensus 188 G~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~~ 267 (422)
T 3fvs_A 188 GKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSATGWKVGWVLGPDHIMK 267 (422)
T ss_dssp CCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHHTCGGGCCEEEECCHHHHH
T ss_pred CcCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhcccccCcEEEEecchhccCCccceEEEEEeCHHHHH
Confidence 99995 888999999999999999999752 22222221 245688999999888777 899999887766
Q ss_pred cccceecCCCccccccccCcchhHHHHHHHHHHH-------HHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCC
Q psy15216 217 RIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRL-------ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNR 289 (2602)
Q Consensus 217 ~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~-------~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~ 289 (2602)
.+..... ...++++.....++.++++. ...++++..+++.++++++.+.|.+ . ++.+..+...
T Consensus 268 ~~~~~~~-------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~- 337 (422)
T 3fvs_A 268 HLRTVHQ-------NSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQS-V-GLKPIIPQGS- 337 (422)
T ss_dssp HHHHHHH-------TTTCCCCHHHHHHHHHHHHHHHHTTTCTTCHHHHHHHHHHHHHHHHHHHHHT-T-TCEEEBCSBS-
T ss_pred HHHHHHh-------hccCCCCcHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHH-c-CCeecCCCee-
Confidence 6644321 12345666777777777763 2345788899999999999999987 3 7776654332
Q ss_pred CCceEEEEEccc----C----------hhHHHHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCC
Q psy15216 290 IPHNLNISFNFI----E----------GESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGR 352 (2602)
Q Consensus 290 ~~~~~~~~~~~~----~----------~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~ 352 (2602)
...++.++.. + ..++...+ +||.+.+|..|... . ......+++|||++.
T Consensus 338 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~------~------~~~~~~~~iRis~~~ 403 (422)
T 3fvs_A 338 --YFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSV------P------HQKHFDHYIRFCFVK 403 (422)
T ss_dssp --SEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCH------H------HHTTSCSEEEEECCC
T ss_pred --eEEEEechhhcccccccccccccccHHHHHHHHHHhcCEEEeCcHHhcCC------c------CCCCCCCeEEEEecC
Confidence 3334444321 1 33555543 59999999988642 0 001224899999986
Q ss_pred CCCHHHHHHHHHHHHhh
Q psy15216 353 FTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 353 ~~t~edid~li~~L~~~ 369 (2602)
++++++.++++|++.
T Consensus 404 --~~e~i~~~l~~l~~~ 418 (422)
T 3fvs_A 404 --DEATLQAMDEKLRKW 418 (422)
T ss_dssp --CHHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHHH
Confidence 999999999999863
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.4e-22 Score=260.72 Aligned_cols=312 Identities=14% Similarity=0.116 Sum_probs=230.6
Q ss_pred CCCHHHHHHHHHHHhhc--cCCCCCccchhHHHHHHHHHHHHHHHHHHh----CCC--CC-cEEEeCCHHHHHHHHHHhh
Q psy15216 1404 PIDPRVVDKMIPYLRVQ--FGNPASRNHIYGWTAEKAIEKARNEVAQLI----YAD--PR-EIIWTSGATESNNLAIKGA 1474 (2602)
Q Consensus 1404 ~~~~~v~eal~~~l~~~--~~np~~~~~~~~~~~~~~~~~lr~~ia~~~----g~~--~~-~iv~t~gaT~al~~al~~l 1474 (2602)
+.++.+.+++.+.++.. ..++. .....++|+++++++ |++ ++ +|++|+|+++|++.++.++
T Consensus 38 ~~~~~v~~a~~~~~~~~~~~~y~~----------~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~l 107 (376)
T 2dou_A 38 PPPEAPLKALAEALNDPTTYGYCL----------KSCTLPFLEEAARWYEGRYGVGLDPRREALALIGSQEGLAHLLLAL 107 (376)
T ss_dssp CCCHHHHHHHHHHTTCGGGSSCCC----------HHHHHHHHHHHHHHHHHHHSCCCCTTTSEEEESSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCcCCCCC----------CCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHHHHHHHHh
Confidence 35778999998887531 11111 123567778888777 874 45 8999999999999999998
Q ss_pred hhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccCCceEEEEeccccccccccC---h
Q psy15216 1475 AHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---I 1551 (2602)
Q Consensus 1475 ~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~---l 1551 (2602)
. ++||+|+++.|+|+++...+... |++++.++.+.++.+|++++++++++++++|++++|+||||.++| +
T Consensus 108 ~----~~gd~vl~~~p~y~~~~~~~~~~---g~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l 180 (376)
T 2dou_A 108 T----EPEDLLLLPEVAYPSYFGAARVA---SLRTFLIPLREDGLADLKAVPEGVWREAKVLLLNYPNNPTGAVADWGYF 180 (376)
T ss_dssp C----CTTCEEEEESSCCHHHHHHHHHT---TCEEEEECBCTTSSBCGGGSCHHHHHHEEEEEECSSCTTTCCCCCHHHH
T ss_pred c----CCCCEEEECCCCcHhHHHHHHHc---CCEEEEeeCCCCCCCCHHHHHHhhccCceEEEECCCCCCcCccCCHHHH
Confidence 6 79999999999999987766544 999999998444568999999999888999999999999999998 6
Q ss_pred HHHHHHhhhcCCEEEEecccccCcc---c---ccC-CCCCccEEEEccccccCCCc--eEEEEEecCCCCccccccccCC
Q psy15216 1552 LEIGELCRSKGVIFHCDAAQAVGKI---D---INI-QNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGG 1622 (2602)
Q Consensus 1552 ~~I~~ia~~~gi~vivD~a~~~g~~---~---~~l-~~~~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~~g~~ 1622 (2602)
++|.++|++||+++|+|++|+.+.. + ..+ ...+.++++.|+||.+|++| +||++.++++++.+......
T Consensus 181 ~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~-- 258 (376)
T 2dou_A 181 EEALGLARKHGLWLIHDNPYVDQVYEGEAPSPLALPGAKERVVELFSLSKSYNLAGFRLGFALGSEEALARLERVKGV-- 258 (376)
T ss_dssp HHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSTTGGGTEEEEEEHHHHHTCGGGCCEEEEECHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCcEEEEecchhhcCChhheeEEEecCHHHHHHHHHHHHh--
Confidence 7889999999999999999975431 1 222 11246788999999888777 79999988766665443211
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEec-CCcHH
Q psy15216 1623 HEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGES 1701 (2602)
Q Consensus 1623 ~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~-~~~~~ 1701 (2602)
...+.+...+.++.++|+.....+++.++++.++++++.+.|.+ . +.+..+.. .....+.++. .+..+
T Consensus 259 -----~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~--~~~~~~~~---~~~~~~~~~~~~~~~~ 327 (376)
T 2dou_A 259 -----IDFNQYAGVLRMGVEALKTPKEVVRGYARVYRERALGMAEALKG-V--LSLLPPRA---TMYLWGRLPEGVDDLE 327 (376)
T ss_dssp -----HCCCSCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHTT-T--SEECCCCB---SSEEEEECCTTCCHHH
T ss_pred -----cccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH-h--cCccCCCe---eEEEEEECCCCCCHHH
Confidence 11244566666666777643456788888999999999999987 3 45443211 2223344442 34456
Q ss_pred HHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1702 LLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1702 ~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
+...| +||.+++|..|... ..+++||+++. +.+++++++++|++
T Consensus 328 ~~~~l~~~gi~v~~g~~f~~~-----------------~~~~~Ris~~~--~~~~i~~~l~~l~~ 373 (376)
T 2dou_A 328 FGLRLVERGVALAPGRGFGPG-----------------GKGFVRIALVR--PLEELLEAAKRIRE 373 (376)
T ss_dssp HHHHHHHTTEECEEGGGGCGG-----------------GTTEEEEECCS--CHHHHHHHHHHHHH
T ss_pred HHHHHHHCCEEEcCchhhCCC-----------------CCCeEEEEecC--CHHHHHHHHHHHHH
Confidence 66665 79999998877421 13789999985 78999999999986
|
| >2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.5e-22 Score=264.94 Aligned_cols=320 Identities=16% Similarity=0.159 Sum_probs=232.9
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCC
Q psy15216 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK 87 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd 87 (2602)
+++|.+.+++.+++.....+++. +...+...+..+++|+++++++|. +++|++++|++ ++..++.++.. +.+||
T Consensus 60 ~~~p~v~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~la~~~~~-~~~i~~~sG~~-a~~~~~~~l~~--~~~gd 133 (401)
T 2bwn_A 60 GQHPVVLAAMHEALEAVGAGSGG--TRNISGTTAYHRRLEAEIAGLHQK-EAALVFSSAYN-ANDATLSTLRV--LFPGL 133 (401)
T ss_dssp GGCHHHHHHHHHHHHHHCSCCCS--BTTTBCCBHHHHHHHHHHHHHTTC-SEEEEESCHHH-HHHHHHHHHHH--HSTTC
T ss_pred CCCHHHHHHHHHHHHHcCCCCCC--cCcccCChHHHHHHHHHHHHHhCC-CcEEEECCcHH-HHHHHHHHHhc--CCCCC
Confidence 35778999999998765444442 222222335678999999999997 46788877766 77777665431 25899
Q ss_pred EEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhcc----CCceEEEEecccCcccccccHHHHHHHHH
Q psy15216 88 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKIC----SDTILVSVMLVNNEIGVIQPILEIGELCR 163 (2602)
Q Consensus 88 ~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~----~~tklv~i~~~~npTG~~~~l~~I~~la~ 163 (2602)
+|+++.++|+++...+.. .|++++.++.+ |+++++++++ +++++|++++++||||.++|+++|.++|+
T Consensus 134 ~Vl~~~~~~~~~~~~~~~---~g~~~~~v~~~-----d~~~le~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~ 205 (401)
T 2bwn_A 134 IIYSDSLNHASMIEGIKR---NAGPKRIFRHN-----DVAHLRELIAADDPAAPKLIAFESVYSMDGDFGPIKEICDIAE 205 (401)
T ss_dssp EEEEETTCCHHHHHHHHH---SCCCEEEECTT-----CHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBCCHHHHHHHHH
T ss_pred EEEECchhhHHHHHHHHH---cCCeEEEEcCC-----CHHHHHHHHHhhccCCceEEEEecCcCCCCCcCCHHHHHHHHH
Confidence 999999999998887755 49999999864 7888888886 68999999999999999999999999999
Q ss_pred hcCCEEEEeccccccccc-----c-cCCCC--CccEEEeccccccCCCCcEEEEEecCCCCcccceecCCCccccccccC
Q psy15216 164 SKGVIFHCDAAQAVGKID-----I-NIQNY--KVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGT 235 (2602)
Q Consensus 164 ~~g~~livD~a~a~g~~~-----~-dl~~~--~~D~~~~S~~K~~Gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt 235 (2602)
+||+++|+|++|+.|... + ..... ..|+++.|++|.+|++| ||++.++++.+.+..... ...+..++
T Consensus 206 ~~~~~li~Dea~~~g~~~~~g~~~~~~~~~~~~~~i~~~s~sK~~~~~G-G~~~~~~~~~~~l~~~~~----~~~~~~~~ 280 (401)
T 2bwn_A 206 EFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGVFG-GYIAASARMVDAVRSYAP----GFIFSTSL 280 (401)
T ss_dssp HHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTCSCC-EEEEECHHHHHHHHHHCH----HHHTSBCC
T ss_pred HcCCEEEEeccccccccCCCCceeeeccCccccCcEEEeechhhccCCC-CEEecCHHHHHHHHHhCc----CceecCCC
Confidence 999999999999855321 0 00111 35899999999999887 999988766555432111 11223445
Q ss_pred cchhHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc-cChhHHHHHh---
Q psy15216 236 LATHQIVGMGEAFRLARI-EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGESLLMAI--- 310 (2602)
Q Consensus 236 ~~~~~~~al~~al~~~~~-~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~L--- 310 (2602)
++ ..++++.+++++... ++++..+++.++++++.+.|.+ . ++.++.+.. .++.+.++. .+..++...|
T Consensus 281 ~~-~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~----~~~~~~~~~~~~~~~~~~~L~~~ 353 (401)
T 2bwn_A 281 PP-AIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKA-L-GMPIIDHGS----HIVPVVIGDPVHTKAVSDMLLSD 353 (401)
T ss_dssp CH-HHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH-H-TCCBCCCSS----SCEEEECCCHHHHHHHHHHHHHH
T ss_pred CH-HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH-C-CCcccCCCC----CeEEEEeCChHHHHHHHHHHHhc
Confidence 45 667777788886543 3578899999999999999988 4 776664321 244454442 3445566555
Q ss_pred CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 311 KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 311 ~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
+||.++++..+..+ ...+++|++++.+++++|+++++++|++.
T Consensus 354 ~gi~v~~~~~~~~~----------------~~~~~iRis~~~~~t~~~i~~~~~~l~~~ 396 (401)
T 2bwn_A 354 YGVYVQPINFPTVP----------------RGTERLRFTPSPVHDLKQIDGLVHAMDLL 396 (401)
T ss_dssp HCEECCEECTTTSC----------------TTCCEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred CCEEEeecCCCCCC----------------CCCceEEEEeeCCCCHHHHHHHHHHHHHH
Confidence 49999877543211 11268999999999999999999999864
|
| >1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.89 E-value=5.3e-23 Score=261.84 Aligned_cols=299 Identities=15% Similarity=0.096 Sum_probs=207.2
Q ss_pred HHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHHH-HHhCCcEEEEeccCCCCc
Q psy15216 45 KARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDGFRVTYLKPKNNGL 123 (2602)
Q Consensus 45 ~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~-~~~~G~~v~~v~~~~~~~ 123 (2602)
++++.+++++|++ +.++ ++++++|+++++.++. ++||+|+++.++|+++...+.. ++..|++++.++.
T Consensus 2 ~l~~~la~~~g~~-~~i~-~~sG~~a~~~~~~~~~----~~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~----- 70 (331)
T 1pff_A 2 ALEGKIAKLEHAE-ACAA-TASGMGAIAASVWTFL----KAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDM----- 70 (331)
T ss_dssp HHHHHHHHHHTCS-EEEE-ESSHHHHHHHHHHHHC----CTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECT-----
T ss_pred hHHHHHHHHhCCC-eEEE-eCChHHHHHHHHHHhc----CCCCEEEEcCCCcchHHHHHHHHHHhcCCEEEEeCC-----
Confidence 5789999999986 4454 5555899999999886 7999999999999998877754 3567999999975
Q ss_pred cChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHh-cCCEEEEecccccccccccCCCCCccEEEeccccccCC
Q psy15216 124 ITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRS-KGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGP 202 (2602)
Q Consensus 124 ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~-~g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K~~Gp 202 (2602)
.|++++++++++++++|++++++||||.+.|+++|.++|++ +|+++|+|++|+.+....++ .+++|++++|+||++|.
T Consensus 71 ~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~~li~D~a~~~~~~~~~~-~~~~d~~~~s~~K~~~~ 149 (331)
T 1pff_A 71 AVPGNIEKHLKPNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILTNPL-DLGVDIVVHSATKYING 149 (331)
T ss_dssp TSTTHHHHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHHCCGG-GGTCSEEEEETTTTTSS
T ss_pred CCHHHHHHhhcCCCeEEEEECCCCCcCcccCHHHHHHHHhhhcCCEEEEECCCcccccCChh-hcCCcEEEEECccccCC
Confidence 48999999999999999999999999999999999999999 99999999999987654344 46789999999997664
Q ss_pred -CC--cEEEEEec-CCCCcccceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH------
Q psy15216 203 -KG--IGALYIRR-NPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNG------ 272 (2602)
Q Consensus 203 -~G--~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~------ 272 (2602)
.+ +|++++++ ++++.+.+...++ ..++++....+++..+++......+...+....+.+++.+.
T Consensus 150 ~~~r~~G~~~~~~~~~~~~l~~~~~~~------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~ 223 (331)
T 1pff_A 150 HTDVVAGLVCSRADIIAKVKSQGIKDI------TGAIISPHDAWLITRGTLTLDMRVKRAAENAQKVAEFLHEHKAVKKV 223 (331)
T ss_dssp SSSCCCEEEEECHHHHHHHHHTCCCCC------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCCE
T ss_pred CCCceEEEEEeCcHHHHHHHHHHHHhh------cCCCCCHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHcCCCeeEE
Confidence 44 79999998 7777776654331 12345555555444555533323333333333333333322
Q ss_pred ----HhhccCceEEeCCCCCCCCceEEEEEcccChhHHHHHh--CCeEEccc---------ccCCCCC--CChHHHHHHc
Q psy15216 273 ----LMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDIAVSSG---------SACTSAS--LEPSYVLRAL 335 (2602)
Q Consensus 273 ----L~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~v~~g---------~~~~~~~--~~~~~~~~~~ 335 (2602)
|.+ .|++.++.+.....+.++.+.++ +...+...| .||.++.. .+|..+. ..++..+..+
T Consensus 224 ~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~gI~~~~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~ 300 (331)
T 1pff_A 224 YYPGLPD-HPGHEIAKKQMKMFGSMIAFDVD--GLEKAKKVLDNCHVVSLAVSLGGPESLIQHPASMTHAGVPKEEREAA 300 (331)
T ss_dssp ECTTSTT-STTHHHHHHHCSSCCSEEEEECS--SHHHHHHHHHTCSSSEECSSCCSSSCEEECHHHHTSTTSCHHHHHHT
T ss_pred ECCCCCC-CccHHHHHhhCCCCceEEEEEEC--CHHHHHHHHHhCCCceeccCCCCcceeeecchhhcccccCHHHHHhc
Confidence 111 12222222111112334444443 555555555 68877654 2333211 1233444566
Q ss_pred CCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 336 GCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 336 g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
|++ ++++|+|++.+++++++++++++|++
T Consensus 301 g~~----~~~iRis~~~~~t~~~i~~l~~~l~~ 329 (331)
T 1pff_A 301 GLT----DNLIRLSVGCENVQDIIDDLKQALDL 329 (331)
T ss_dssp TCC----TTEEEEECCSSCHHHHHHHHHHHHHT
T ss_pred CCC----CCeEEEEEecCCHHHHHHHHHHHHHH
Confidence 664 38999999999999999999999985
|
| >2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=7e-22 Score=265.83 Aligned_cols=313 Identities=18% Similarity=0.227 Sum_probs=221.0
Q ss_pred cchhhhHHHHHHHHHHHHHHHhCCC--CCcEEEeCCHHHHHHHHHHhccccc----ccCC-----C-EEEEcCCCCcccH
Q psy15216 33 HIYGWTAEKAIEKARNEVAQLIYAD--PREIIWTSGATESNNLAIKGAAHFY----KKRG-----K-HIITVQTEHKSVL 100 (2602)
Q Consensus 33 ~~~~~~~~~~~~~~r~~lA~~~g~~--~~~Iv~t~g~T~al~~~~~~l~~~~----~~~g-----d-~Vlv~~~~~~s~~ 100 (2602)
+..+.....+.+++++++++++|++ ++++++++|+|+|+..++.++.... ..+| + +|+++.++|+++.
T Consensus 124 ~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~s~~ 203 (504)
T 2okj_A 124 YEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIK 203 (504)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHH
T ss_pred hhhChHHHHHHHHHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcchHHHH
Confidence 4444455566778889999999997 6789999999999999999885211 0245 6 8999999999999
Q ss_pred HHHHHHHhCCc-EEEEeccCCCCccChHHHHhhccC------CceEEEEecccCcccccccHHHHHHHHHhcCCEEEEec
Q psy15216 101 DSIRKLENDGF-RVTYLKPKNNGLITLSQLEEKICS------DTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDA 173 (2602)
Q Consensus 101 ~~~~~~~~~G~-~v~~v~~~~~~~ld~e~l~~~i~~------~tklv~i~~~~npTG~~~~l~~I~~la~~~g~~livD~ 173 (2602)
.++..+.. |. +++.+++++++.+|+++|+++|++ +|++|++++++|+||.+.|+++|+++|++||+++|+|+
T Consensus 204 ~~~~~~g~-g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~l~~I~~la~~~g~~lhvD~ 282 (504)
T 2okj_A 204 KAGAALGF-GTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDA 282 (504)
T ss_dssp HHHHHTTS-CGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCCHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHcCC-CcccEEEEecCCCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEeh
Confidence 88887622 33 899999988899999999999975 58999999999999999999999999999999999999
Q ss_pred cccccccc-----ccCCCC-CccEEEeccccccC-CCCcEEEEEecC-CCCc----ccceecCCCcccc--c-------c
Q psy15216 174 AQAVGKID-----INIQNY-KVDLMSFSAHKIYG-PKGIGALYIRRN-PRTR----IEAQIHGGGHEYG--L-------R 232 (2602)
Q Consensus 174 a~a~g~~~-----~dl~~~-~~D~~~~S~~K~~G-p~G~G~l~~~~~-~~~~----l~~~~~g~~~~~~--~-------~ 232 (2602)
+|+.+... ..+... ++|++++|+||++| |.|+|+++++++ +... ..++..++..... + .
T Consensus 283 a~~~~~~~~~~~~~~~~g~~~~D~i~~~~hK~~~~p~~~g~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 362 (504)
T 2okj_A 283 AWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQ 362 (504)
T ss_dssp TTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCSSSCCSCCSSCGGGCCGGGSSC
T ss_pred hhhhHHHhCHhhHhhcCCcccCCEEEECchhhcCCCcceEEEEEECHHHHHHHhcCCCccccCCcccccCcCCcccCCCC
Confidence 99877653 233332 68999999999765 888999999874 3321 2223322211000 0 0
Q ss_pred cc-CcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcccC---------
Q psy15216 233 SG-TLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIE--------- 302 (2602)
Q Consensus 233 ~g-t~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~~--------- 302 (2602)
.+ ......++++..++ ...++.+..++..++++++.+.|.+ .++++++.+.... ...+.|.+....
T Consensus 363 ~~rr~~~l~~~a~l~~l--g~~g~~~~~~~~~~~a~~l~~~L~~-~~~~~~~~~~~p~-~~~v~f~~~~~~~~~~~~~~~ 438 (504)
T 2okj_A 363 CGRHVDIFKFWLMWKAK--GTVGFENQINKCLELAEYLYAKIKN-REEFEMVFNGEPE-HTNVCFWYIPQSLRGVPDSPQ 438 (504)
T ss_dssp SSCBCCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHTT-CTTEEESSSSCCS-SSCEEEEECCGGGSSCCCCHH
T ss_pred CCCCccHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHhc-CCCEEEEecCCCC-eEEEEEEEeCccccccccchh
Confidence 00 01222333332333 3467888999999999999999987 7899998631111 223444432110
Q ss_pred --------hhHHHHHh--CCe-EEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecC-CCCCHHHHHHHHHHHHhh
Q psy15216 303 --------GESLLMAI--KDI-AVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIG-RFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 303 --------~~~~~~~L--~gI-~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~-~~~t~edid~li~~L~~~ 369 (2602)
...+.+.| +|+ .+.+.. +.. ..+++|++++ +++|++||++++++|++.
T Consensus 439 ~~~~~~~~~~~l~~~L~~~G~~~~~~~~-~~~------------------~~~~lRis~~~~~~t~edi~~~~~~l~~~ 498 (504)
T 2okj_A 439 RREKLHKVAPKIKALMMESGTTMVGYQP-QGD------------------KANFFRMVISNPAATQSDIDFLIEEIERL 498 (504)
T ss_dssp HHHHHTTHHHHHHHHHHHHTSCEEEEEE-ETT------------------EEEEEEECCCCTTCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhCCcEEEEeeE-ECC------------------ceEEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 12344444 453 333211 100 0158999996 899999999999999864
|
| >1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B* | Back alignment and structure |
|---|
Probab=99.89 E-value=5.2e-22 Score=264.50 Aligned_cols=354 Identities=14% Similarity=0.133 Sum_probs=246.7
Q ss_pred CCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCC
Q psy15216 7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRG 86 (2602)
Q Consensus 7 ~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~g 86 (2602)
+...|.+.+++.+.+.. .+|.. ....+....+..+++++++++++|++. .+++++|+++|+..++.++.....++|
T Consensus 76 ~~~~p~v~~~~~~~~~~--~~~~~-~~~~~~g~~~l~~~l~~~la~~~g~~~-~~~~~~ggt~a~~~al~~~~~~~~~~G 151 (474)
T 1wyu_B 76 MKYNPKLHEEAARLFAD--LHPYQ-DPRTAQGALRLMWELGEYLKALTGMDA-ITLEPAAGAHGELTGILIIRAYHEDRG 151 (474)
T ss_dssp CCCCCHHHHHHHHTTSS--CCTTS-CGGGCHHHHHHHHHHHHHHHHHHTCSE-EECCCSSHHHHHHHHHHHHHHHHHHTT
T ss_pred ccCCHHHHHHHHHHHHh--cCCCC-chhhChHHHHHHHHHHHHHHHHHCCCc-eeecChHHHHHHHHHHHHHHHHHHhcC
Confidence 34456777777665221 23322 111355567789999999999999874 477889999999987766532223578
Q ss_pred C-----EEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccCCceEEEEecccCccccc-ccHHHHHH
Q psy15216 87 K-----HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVI-QPILEIGE 160 (2602)
Q Consensus 87 d-----~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~-~~l~~I~~ 160 (2602)
| +|+++.+.|+++...+... |++++.+++++++.+|+++|+++++++|++|++++| ||||.+ .|+++|++
T Consensus 152 d~~~r~~Vlv~~~~h~~~~~~~~~~---G~~vv~v~~~~~~~~d~~~L~~~i~~~t~~v~~~~p-n~~G~~~~~l~~i~~ 227 (474)
T 1wyu_B 152 EGRTRRVVLVPDSAHGSNPATASMA---GYQVREIPSGPEGEVDLEALKRELGPHVAALMLTNP-NTLGLFERRILEISR 227 (474)
T ss_dssp CTTTCCEEEEETTSCTHHHHHHHHT---TCEEEEECBCTTSSBCHHHHHHHCSTTEEEEEECSS-CTTSCCCTTHHHHHH
T ss_pred CccCCCEEEEeCCcChhhHHHHHHC---CCEEEEecCCCCCCcCHHHHHHhhCCCceEEEEECC-CCCcccCCCHHHHHH
Confidence 7 9999999999998776554 999999999888999999999999999999999998 689998 69999999
Q ss_pred HHHhcCCEEEEecccccccc-cccCCCCCccEEEeccccccC-CC-----CcEEEEEecCCCCccc-ceec-CCC-----
Q psy15216 161 LCRSKGVIFHCDAAQAVGKI-DINIQNYKVDLMSFSAHKIYG-PK-----GIGALYIRRNPRTRIE-AQIH-GGG----- 226 (2602)
Q Consensus 161 la~~~g~~livD~a~a~g~~-~~dl~~~~~D~~~~S~~K~~G-p~-----G~G~l~~~~~~~~~l~-~~~~-g~~----- 226 (2602)
+|++||+++|+|++|+.+.. ..+...+++|++++|+||+++ |. |+|++++++++++.+. +... ++.
T Consensus 228 l~~~~g~~li~Dea~~~~~~g~~~~~~~g~di~~~s~~K~~~~p~g~gG~~~G~~~~~~~l~~~l~~~~~~~~g~~~~~~ 307 (474)
T 1wyu_B 228 LCKEAGVQLYYDGANLNAIMGWARPGDMGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLPVPLVERGEEGFYLD 307 (474)
T ss_dssp HHHHHTCEEEEEGGGGGGTTTTCCHHHHTCSEEECCTTTTTCCCCTTSCCCCCCEEECGGGGGGCCSCEEEECSSCEEEE
T ss_pred HHHHcCCEEEEeCchhhhhccCCCcccCCCcEEEEeCccccccCCCCCCCCeEEEEEcHHHHHhCCCCeeeccCCeeEec
Confidence 99999999999999976654 233334578999999999654 42 5899999998877765 2221 110
Q ss_pred --cc---ccccccCcchhHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEc-
Q psy15216 227 --HE---YGLRSGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN- 299 (2602)
Q Consensus 227 --~~---~~~~~gt~~~~~~~al~~al~-~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~- 299 (2602)
.+ .++..++.+...+.++..++. +..+++++..++..++++++.+.|.+ . |+++..+... .+.+.+.++
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~g~~~l~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~--~~~~~~~~~~ 383 (474)
T 1wyu_B 308 FDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKE-K-GYRVPYDGPS--MHEFVAQPPE 383 (474)
T ss_dssp CCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-T-TCBCSSCSSC--CSCEEEBCST
T ss_pred ccCcccCcccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-c-CcEecCCCCc--ceEEEEEcCC
Confidence 00 122334455554544445554 23456778889999999999999988 4 7766322211 122333332
Q ss_pred ccChhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhhhhhhhhhH
Q psy15216 300 FIEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKEFFMSYSE 377 (2602)
Q Consensus 300 ~~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~~~~~~y~~ 377 (2602)
..+..++...| +||.+ ++..+.. ...+++||+++.+++.+|+++++++|++.... .+
T Consensus 384 ~~~~~~l~~~L~~~Gi~~-~~~~~~~-----------------~~~~~lRis~~~~~t~e~id~~~~~L~~~~~~---~~ 442 (474)
T 1wyu_B 384 GFRALDLAKGLLELGFHP-PTVYFPL-----------------IVKEALMVEPTETEAKETLEAFAEAMGALLKK---PK 442 (474)
T ss_dssp TCCHHHHHHHHHHTTCCC-CEESCST-----------------TSTTCEEECCCTTSCHHHHHHHHHHHHHHHTS---CH
T ss_pred CCCHHHHHHHHHHCCccc-ccccccc-----------------ccCCEEEEEeecCCCHHHHHHHHHHHHHHHHh---Cc
Confidence 24566777776 67764 2222210 11378999999999999999999999974322 44
Q ss_pred hhhhcccCCCCCCCCC
Q psy15216 378 KVLDHYENPRNVGVFE 393 (2602)
Q Consensus 378 ~~~~hy~~p~n~g~~~ 393 (2602)
..+......--++.++
T Consensus 443 ~~l~~~p~~~~~~~~~ 458 (474)
T 1wyu_B 443 EWLENAPYSTPVRRLD 458 (474)
T ss_dssp HHHHTCCCSSSSCSBC
T ss_pred hhhhcCCCCCCcCccc
Confidence 5555544444456664
|
| >2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.9e-22 Score=268.64 Aligned_cols=323 Identities=18% Similarity=0.216 Sum_probs=223.8
Q ss_pred CCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhh----ccCCC------EEEEcCCCC
Q psy15216 1423 NPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFY----KKRGK------HIITVQTEH 1492 (2602)
Q Consensus 1423 np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~----~~~gd------~Vlv~~~~~ 1492 (2602)
|++...|..++...++..++++++++++|+++++++||+|+|+|+..++.++.... ..+|+ +|+++.++|
T Consensus 134 n~~~~~~~~s~~~~~le~~~~~~la~l~g~~~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h 213 (515)
T 2jis_A 134 NTSQYTYEIAPVFVLMEEEVLRKLRALVGWSSGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECH 213 (515)
T ss_dssp CCCTTCTTTCHHHHHHHHHHHHHHHHHHTCSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSC
T ss_pred ccCCCchhhchHHHHHHHHHHHHHHHHhCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCcc
Confidence 55544455566777888999999999999988889999999999999988874211 12565 899999999
Q ss_pred cchHHHHHHHHhCCc---EEEEeccCCCCCcChhHHHhhccC------CceEEEEeccccccccccChHHHHHHhhhcCC
Q psy15216 1493 KSVLDSIRKLENDGF---RVTYLKPKNNGLITLSQLEEKICS------DTILVSVMLVNNEIGVIQPILEIGELCRSKGV 1563 (2602)
Q Consensus 1493 ~s~~~~~~~~~~~G~---~v~~v~~~~~~~id~d~l~~~i~~------~t~lv~l~~~~n~tG~~~~l~~I~~ia~~~gi 1563 (2602)
+++..++..+ |. +++.++.++++.+|+++|+++|++ +|++|++++++|+||.+.|+++|+++|++||+
T Consensus 214 ~s~~~~~~~~---g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~l~~I~~la~~~g~ 290 (515)
T 2jis_A 214 YSIQKGAAFL---GLGTDSVRVVKADERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGL 290 (515)
T ss_dssp THHHHHHHHT---TSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHc---CCCCCcEEEEecCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCC
Confidence 9998887776 55 899999988899999999999975 48999999999999999999999999999999
Q ss_pred EEEEecccccCccccc-----CCCC-CccEEEEcccccc-CCCceEEEEEecC--CCCc----cccccccCCc--cccCC
Q psy15216 1564 IFHCDAAQAVGKIDIN-----IQNY-KVDLMSFSAHKIY-GPKGIGALYIRRN--PRTR----IEAQIHGGGH--EYGLR 1628 (2602)
Q Consensus 1564 ~vivD~a~~~g~~~~~-----l~~~-~~D~~v~S~~K~~-gp~G~G~l~~~~~--~~~~----l~~~~~g~~~--~~~~~ 1628 (2602)
|+|+|++|+.+..+.+ +..+ ++|++++|+||++ +|.|+|+++++++ ++.. ..+.+.++.. ...+.
T Consensus 291 ~l~vD~a~~~~~~~~~~~~~~~~g~~~aD~v~~s~hK~l~~p~g~G~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~ 370 (515)
T 2jis_A 291 WLHVDAAWGGSVLLSQTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALLLQDTSNLLKRCHGSQASYLFQQDKFYDVALD 370 (515)
T ss_dssp EEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESCCSCHHHHHHCC---------CCSCGGGC
T ss_pred eEEEehhhhhHHHhChhhHhhcCCCccCCEEEECcccccCCCCCeeEEEEeChHHHHHHHhcCCchhccCCcccccccCC
Confidence 9999999998877654 4444 7899999999965 5889999999976 3332 1222222211 00111
Q ss_pred CCCcch-----hHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEE-ec-C---
Q psy15216 1629 SGTLAT-----HQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISF-NF-I--- 1697 (2602)
Q Consensus 1629 ~gt~~~-----~~~~al~~aL~-~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~-~~-~--- 1697 (2602)
.++.++ ....++..++. +...+++++.++..++++++.+.|.+ .+++.+..++. .....|.+ +. .
T Consensus 371 ~~~~~~~~~rr~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~-~~g~~~~~~~~---~~~v~f~~~p~~~~~~ 446 (515)
T 2jis_A 371 TGDKVVQCGRRVDCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKK-REGFELVMEPE---FVNVCFWFVPPSLRGK 446 (515)
T ss_dssp CGGGCSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-STTEEESSCCS---SSEEEEEECCGGGTTC
T ss_pred CCCCCCCCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc-CCCEEEeCCCC---eeEEEEEEeCcccccc
Confidence 111110 01122333344 33567888999999999999999988 78999986532 12333433 21 0
Q ss_pred -CcHHHHHh-------cCCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEec-CCCCCHHHHHHHHHHHHH
Q psy15216 1698 -EGESLLMA-------IKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTI-GRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1698 -~~~~~~~~-------L~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~-~~~~t~edid~li~~L~~ 1764 (2602)
+..++... +.+.....|..+.... .. ....+++|+++ ++++|.+||++++++|++
T Consensus 447 ~~~~~~~~~l~~~~~~l~~~l~~~G~~~~~~~--------~~----~~~~~~lRis~~~~~~t~edid~~~~~l~~ 510 (515)
T 2jis_A 447 QESPDYHERLSKVAPVLKERMVKEGSMMIGYQ--------PH----GTRGNFFRVVVANSALTCADMDFLLNELER 510 (515)
T ss_dssp TTSTTHHHHHHTHHHHHHHHHHHHTSCEEEEE--------EE----TTEEEEEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHhcCCEEEEEE--------EE----CCceEEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 11111110 1111112222221000 00 00126899999 799999999999999986
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=6.1e-23 Score=270.66 Aligned_cols=316 Identities=12% Similarity=0.072 Sum_probs=233.8
Q ss_pred CCHHHHHHHHHHHhhh----cCCCCCCCcchhhhHHHHHHHHHHHHHHHh----C---CCCCcEEEeCCHHHHHHHHHHh
Q psy15216 9 IDPRVVDKMIPYLRVQ----FGNPASRNHIYGWTAEKAIEKARNEVAQLI----Y---ADPREIIWTSGATESNNLAIKG 77 (2602)
Q Consensus 9 ~p~~v~~a~~~~l~~~----~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~----g---~~~~~Iv~t~g~T~al~~~~~~ 77 (2602)
+++.+.+++.+.+... ..++.. ....++|+.+++++ | +++++|++|+|+++|+++++.+
T Consensus 59 ~~~~v~~a~~~~~~~~~~~~~~y~~~----------~g~~~lr~~la~~l~~~~g~~~~~~~~v~~t~G~~~al~~~~~~ 128 (425)
T 1vp4_A 59 PRKELAEIAKEIIEKEYHYTLQYSTT----------EGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKL 128 (425)
T ss_dssp CHHHHHHHHHHHHHHSHHHHTSCCCT----------TCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhcchhhcCCCCC----------CCCHHHHHHHHHHHHhccCCCCCCcccEEEeccHHHHHHHHHHH
Confidence 5678889988887641 222221 12345667777766 8 6678999999999999999999
Q ss_pred cccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccC--------CceEE-EEecccCc
Q psy15216 78 AAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS--------DTILV-SVMLVNNE 148 (2602)
Q Consensus 78 l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~--------~tklv-~i~~~~np 148 (2602)
+. ++||+|+++.|.|+++...+.. .|++++.++.++++ +|+++|++++++ ++++| ++++++||
T Consensus 129 l~----~~gd~Vl~~~p~y~~~~~~~~~---~g~~~~~v~~~~~~-~d~~~l~~~l~~~~~~~~~~~~~~v~~~~~~~np 200 (425)
T 1vp4_A 129 FL----DDESYCVLDDPAYLGAINAFRQ---YLANFVVVPLEDDG-MDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNP 200 (425)
T ss_dssp HC----CTTCEEEEEESCCHHHHHHHHT---TTCEEEEEEEETTE-ECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTT
T ss_pred hC----CCCCEEEEeCCCcHHHHHHHHH---cCCEEEEeccCCCC-CCHHHHHHHHHhhhhcccCCCceEEEECCCCCCC
Confidence 87 7999999999999997766554 49999999987654 899999999876 78988 58999999
Q ss_pred cccccc---HHHHHHHHHhcCCEEEEecccccccc----cccC---CCCCccEEEeccccccCCCC--cEEEEEecCCCC
Q psy15216 149 IGVIQP---ILEIGELCRSKGVIFHCDAAQAVGKI----DINI---QNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRT 216 (2602)
Q Consensus 149 TG~~~~---l~~I~~la~~~g~~livD~a~a~g~~----~~dl---~~~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~ 216 (2602)
||.++| +++|+++|++||+++|+|++|+.... +..+ ...+.++++.|+||++| +| +||+++++++++
T Consensus 201 tG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~-~G~r~G~~~~~~~~~~ 279 (425)
T 1vp4_A 201 AGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSKVLA-PGLRIGMVAGSKEFIR 279 (425)
T ss_dssp TCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEESTTTTC-GGGCEEEEECCHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHHhCCCCCEEEEeccccccc-cccceEEEeeCHHHHH
Confidence 999998 56788999999999999999976321 1222 12245788999999888 77 699999987766
Q ss_pred cccceecCCCccccccccCcchhHHHHHHHHHHHH--HHhHHHHHHHHHHHHHHHHHHHhhccC---ceEEeCCCCCCCC
Q psy15216 217 RIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLA--RIEMKEELKRILFLQKRLYNGLMESIE---EIYINGDMNNRIP 291 (2602)
Q Consensus 217 ~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~--~~~~~~~~~~~~~l~~~l~~~L~~~~~---g~~l~~~~~~~~~ 291 (2602)
.+.+... ...++++.+...++.++|+.. ..++++..+++.++++++.+.|.+..| ++.+..+.. .
T Consensus 280 ~l~~~~~-------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~---g 349 (425)
T 1vp4_A 280 KIVQAKQ-------SADLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKWVKSEG---G 349 (425)
T ss_dssp HHHHHHH-------HHHSSCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHSTTSTTCEECCCSB---S
T ss_pred HHHHHhh-------hhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCc---c
Confidence 6654321 112345666777777777742 455778888889999999999977434 677764432 2
Q ss_pred ceEEEEEcc-cChhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 292 HNLNISFNF-IEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 292 ~~~~~~~~~-~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
.++.+.++. .+..++...| +||.+++|..|.+. ....+++||+++.. +++++++++++|++
T Consensus 350 ~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~f~~~---------------~~~~~~iRis~~~~-~~e~i~~~l~~l~~ 413 (425)
T 1vp4_A 350 LFIWLTLPEGFDTWEMFEYAKRKKVFYVPGRVFKVY---------------DEPSPSMRLSFCLP-PDEKIVEGIKRLRE 413 (425)
T ss_dssp SEEEEECCTTCCTTTTHHHHHHHTEECEEGGGGCTT---------------CCCCSEEEEECSSS-CHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHCCCEEECchhhcCC---------------CCCCCeEEEEeCCC-CHHHHHHHHHHHHH
Confidence 344455542 3455666666 69999998877532 01237899999874 89999999999996
Q ss_pred h
Q psy15216 369 K 369 (2602)
Q Consensus 369 ~ 369 (2602)
.
T Consensus 414 ~ 414 (425)
T 1vp4_A 414 V 414 (425)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.6e-22 Score=261.53 Aligned_cols=331 Identities=13% Similarity=0.144 Sum_probs=236.1
Q ss_pred CCCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccc---c
Q psy15216 6 TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHF---Y 82 (2602)
Q Consensus 6 ~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~---~ 82 (2602)
..+.++.+++++.+.+...+..+ .+..+++|+.+++++|.+ ++++++|+|+|+++++.++... .
T Consensus 10 ~~~~~~~~~~a~~~~~~~~~~~~-----------~~~~~~l~~~la~~~~~~--~~i~~~sGt~a~~~al~~~~~~~~~~ 76 (390)
T 3b8x_A 10 SSTWDDLEYKAIQSVLDSKMFTM-----------GEYVKQYETQFAKTFGSK--YAVMVSSGSTANLLMIAALFFTKKPR 76 (390)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSS-----------CHHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHTTSSSSCS
T ss_pred CCCCCHHHHHHHHHHHHcCCCCC-----------ChHHHHHHHHHHHHHCCC--cEEEECCHHHHHHHHHHHHHhhhhcC
Confidence 34678899999999887532111 235788999999999986 6888999999999999998100 0
Q ss_pred ccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCC-CccChHHHHhhccCCceEEEEecccCcccccccHHHHHHH
Q psy15216 83 KKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN-GLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGEL 161 (2602)
Q Consensus 83 ~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~-~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~l 161 (2602)
+++||+|+++.++|+++...+... |++++.++++++ +.+|+++|+++++++|++|+++| ++|...|+++|.++
T Consensus 77 ~~~g~~Vi~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~---~~g~~~~~~~i~~l 150 (390)
T 3b8x_A 77 LKKGDEIIVPAVSWSTTYYPLQQY---GLRVKFVDIDINTLNIDIESLKEAVTDSTKAILTVN---LLGNPNNFDEINKI 150 (390)
T ss_dssp CCTTCEEEEESSSCHHHHHHHHHT---TCEEEEECBCTTTCSBCHHHHHHHCCTTEEEEEEEC---GGGCCCCHHHHHHH
T ss_pred CCCcCEEEECCCCcHHHHHHHHHc---CCEEEEEecCccccCcCHHHHHHHhCcCCeEEEEEC---CccChhhHHHHHHH
Confidence 378999999999999998877654 999999999875 88999999999999999999985 58888999999999
Q ss_pred HHhcCCEEEEecccccccccccCCCCCc--cEEEecc---ccccCCCCcEEEEEec-CCCCcccceecCC--Cc------
Q psy15216 162 CRSKGVIFHCDAAQAVGKIDINIQNYKV--DLMSFSA---HKIYGPKGIGALYIRR-NPRTRIEAQIHGG--GH------ 227 (2602)
Q Consensus 162 a~~~g~~livD~a~a~g~~~~dl~~~~~--D~~~~S~---~K~~Gp~G~G~l~~~~-~~~~~l~~~~~g~--~~------ 227 (2602)
|++||+++|+|++|+.|..+ +...++. |+.++|+ +|+.++.| |+++.++ ++.+.+.+...++ ..
T Consensus 151 ~~~~~~~li~D~a~~~g~~~-~~~~~g~~~~~~~~s~~~~k~~~~g~g-G~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~ 228 (390)
T 3b8x_A 151 IGGRDIILLEDNCESMGATF-NNKCAGTFGLMGTFSSFYSNHIATMEG-GCIVTDDEEIYHILLCIRAHGWTRNLPKKNK 228 (390)
T ss_dssp HTTSCCEEEEECTTCTTCEE-TTEETTSSSSEEEEECCTTSSSCSSSC-EEEEESCHHHHHHHHHHTBTTBSTTSCSEET
T ss_pred HHHcCCEEEEECcCcccCEE-CCcccccccceEEEEccCCCCCccCCc-eEEEeCCHHHHHHHHHHHhcCCCcccccccc
Confidence 99999999999999988765 4444443 5655543 44655666 9999876 4444454433222 00
Q ss_pred ------------c-----ccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCC
Q psy15216 228 ------------E-----YGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRI 290 (2602)
Q Consensus 228 ------------~-----~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~ 290 (2602)
. .++..+++++.+.+++. ++ +.+++..++.+++++++.+.|.+ ++++++..++....
T Consensus 229 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~-~l----~~l~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~ 302 (390)
T 3b8x_A 229 VTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIE-QL----KKLPRFISVRRKNAEYFLDKFKD-HPYLDVQQETGESS 302 (390)
T ss_dssp TTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHH-HH----HHHHHHHHHHHHHHHHHHHHHTT-CSSEEECCCCSBCC
T ss_pred ccccccccccccccceeccccccCcCHHHHHHHHH-HH----HHHHHHHHHHHHHHHHHHHHhcC-CCCcccCCCCCCcc
Confidence 0 01122245555554443 23 34567888999999999999987 78988875432222
Q ss_pred CceEEEEEc---ccChhHHHHHh--CCeEEcc---cccCCC-CCCChHHH------HHHcCCCccCCCCeEEEecCCCCC
Q psy15216 291 PHNLNISFN---FIEGESLLMAI--KDIAVSS---GSACTS-ASLEPSYV------LRALGCNDELAHSSIRFTIGRFTT 355 (2602)
Q Consensus 291 ~~~~~~~~~---~~~~~~~~~~L--~gI~v~~---g~~~~~-~~~~~~~~------~~~~g~~~~~~~~~iRis~~~~~t 355 (2602)
+..+.+.++ +.+..++...| +||.+++ +..|.. + .+. ...++..++...+.||++++.++|
T Consensus 303 ~~~~~i~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~t 378 (390)
T 3b8x_A 303 WFGFSFIIKKDSGVIRKQLVENLNSAGIECRPIVTGNFLKNTD----VLKYFDYTVHNNVDNAEYLDKNGLFVGNHQIEL 378 (390)
T ss_dssp CCEEEEEECTTSCCCHHHHHHHHHHTTBCCBCSTTSSGGGCHH----HHTTCEEEESSCCHHHHHHHHHEEEEECCSSCC
T ss_pred cEEEEEEecCcCcccHHHHHHHHHHCCCCeeeecCCchhhcch----hhhcCCCCCcCCChHHHHHhcCEEEeeCCCCCC
Confidence 334455565 34667777777 7999886 333432 2 110 111222333344689999999999
Q ss_pred HHHHHHHHHHHH
Q psy15216 356 EKEIDFTIKLLK 367 (2602)
Q Consensus 356 ~edid~li~~L~ 367 (2602)
++|+++++++|+
T Consensus 379 ~~di~~i~~~l~ 390 (390)
T 3b8x_A 379 FDEIDYLREVLK 390 (390)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHhhC
Confidence 999999999874
|
| >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 | Back alignment and structure |
|---|
Probab=99.89 E-value=6.3e-23 Score=271.93 Aligned_cols=331 Identities=15% Similarity=0.086 Sum_probs=232.4
Q ss_pred eeeccC-CCCCCCHHHHHHHHHHHhhccCCCCC---------ccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHH
Q psy15216 1395 NIVFKD-ATTPIDPRVVDKMIPYLRVQFGNPAS---------RNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGAT 1464 (2602)
Q Consensus 1395 ~v~L~~-~~~~~~~~v~eal~~~l~~~~~np~~---------~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT 1464 (2602)
.+|+|+ ++++.+..+.+++....-..+.++.. ..+..+.......+++++++++++|++++ ++||+|+|
T Consensus 81 ~~yld~aa~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~-~~~t~g~t 159 (456)
T 2z67_A 81 DKDPKSVRIGEREARTYSKIHEELSSGFCHGIGRSGNLVDPQPKASGASIMYALTNKILESFFKQLGLNVH-AIATPIST 159 (456)
T ss_dssp GGCTTCEECSSCCCCCSCHHHHHHTTTCTTCBSBTTBTTSCCTTBHHHHHHHHHHHHHHHHHHHHTTCCCE-EEEESSCH
T ss_pred cccccccccccccccccccccCccccccCCCccHHHHHHhhCcccccCcHHHHHHHHHHHHHHHHcCCCCC-EEEeCcHH
Confidence 467764 55688888888877643221222211 01122334667888999999999999876 99999999
Q ss_pred H-HHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEecc---CCCCCcChhHHHhhc-c----CCceE
Q psy15216 1465 E-SNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP---KNNGLITLSQLEEKI-C----SDTIL 1535 (2602)
Q Consensus 1465 ~-al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~---~~~~~id~d~l~~~i-~----~~t~l 1535 (2602)
+ ++..++.++.. +.+|++|++++++|+++...+.. .|++++.++. +.++.+|+++|+++| + +++.+
T Consensus 160 e~a~~~al~~~~~--~~~~~~vi~~~~~h~s~~~~~~~---~G~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~ 234 (456)
T 2z67_A 160 GMSISLCLSAARK--KYGSNVVIYPYASHKSPIKAVSF---VGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPC 234 (456)
T ss_dssp HHHHHHHHHHHHH--HHCCCEEEEECCCCHHHHHHHHH---TTCEEEEECCEEETTEEECCHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHH--hcCCCEEEEECCCcHHHHHHHHH---cCCCceEEEEeccCCCCCcCHHHHHHHHHHHhhCCCeEE
Confidence 4 55556666541 12778899999999997665554 4999999986 567889999999999 5 47788
Q ss_pred EEEeccccccccccChHHHHHHhhhcCCEEEEecccc---cCcccccCCCC--CccEEEEcccc-ccCCCceEEEEEe-c
Q psy15216 1536 VSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQA---VGKIDINIQNY--KVDLMSFSAHK-IYGPKGIGALYIR-R 1608 (2602)
Q Consensus 1536 v~l~~~~n~tG~~~~l~~I~~ia~~~gi~vivD~a~~---~g~~~~~l~~~--~~D~~v~S~~K-~~gp~G~G~l~~~-~ 1608 (2602)
|++++++|+||.+.|+++|.++|++||+++++|+||+ .|..+.+...+ ++|++++|+|| +++|.|+|+++++ +
T Consensus 235 vv~~~~nn~tG~i~~l~~I~~la~~~g~~v~vD~A~~~~~~g~~~~~~~~~~~~~D~~~~s~hK~~~~p~g~G~l~~~~~ 314 (456)
T 2z67_A 235 VLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVVSSSDKNLLTPIGGGLVYSTDA 314 (456)
T ss_dssp EEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHTSCCSEEEEEHHHHHCCCSSCEEEEESCH
T ss_pred EEEeCCCCCCCCcCCHHHHHHHHHHcCCcEEEECcchHHHHHhhHHHHHhhCCCCCEEEEcCCCCcCCCCCeEEEEEcCH
Confidence 8899999999999999999999999999999998765 33434443223 78999999999 5789999999995 4
Q ss_pred CCCCccccccccCCccccCCCCCcchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhcCC---cEEEeCCCCC
Q psy15216 1609 NPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIE---EIYINGDMNN 1684 (2602)
Q Consensus 1609 ~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~-~~~~~~~~~~~~~~~l~~~l~~~L~~~~~---gl~i~~~~~~ 1684 (2602)
++++.+.+.+.|+ ..+ ....++.+++. +...+++++.++..++++++++.|.+ .+ |+.+..+.
T Consensus 315 ~~~~~l~~~~~g~------~~~----~~~~~~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~g~~v~~~~-- 381 (456)
T 2z67_A 315 EFIKEISLSYPGR------ASA----TPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLND-LSKKTGGKFLDVE-- 381 (456)
T ss_dssp HHHHHHHTTSCSC------BCS----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHSSCCBCCCC--
T ss_pred HHHhhcCcCCCCC------CCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccccCCEecCCC--
Confidence 5555555544332 111 12444445555 33467889999999999999999987 44 65555432
Q ss_pred CCCceEEEEEecCC-cHHHHHhc--CCE---EEc------cccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCH
Q psy15216 1685 RIPHNLNISFNFIE-GESLLMAI--KDI---AVS------SGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTE 1752 (2602)
Q Consensus 1685 ~~~~~~~~~~~~~~-~~~~~~~L--~gI---~v~------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~ 1752 (2602)
+...+.+...+ ..++...| ++| .+. .|.+|... ..+++|+|++.++|.
T Consensus 382 ---~~v~~~~~~~~~~~~l~~~L~~~gi~~~rv~~~~g~f~G~~~~~~-----------------~~~~vr~s~~~~~t~ 441 (456)
T 2z67_A 382 ---SPIASCISVNSDPVEIAAKLYNLRVTGPRGIKKTDHFGNCYLGTY-----------------THDYIVMNAAIGVRT 441 (456)
T ss_dssp ---CSSEEEEECSSCHHHHHHHHHHTTEESCEEECTTCHHHHTCSSCC-----------------SCCEEEEECCTTCCH
T ss_pred ---CeEEEEEecccHHHHHHHHHHHcCCCcceEEeecCcccccccccc-----------------CcchhhhhhhcCCCH
Confidence 22234442122 24566555 554 232 12222211 137899999999999
Q ss_pred HHHHHHHHHHHH
Q psy15216 1753 KEIDFTIKLLKM 1764 (2602)
Q Consensus 1753 edid~li~~L~~ 1764 (2602)
+|+++++++|++
T Consensus 442 eeid~~l~~L~~ 453 (456)
T 2z67_A 442 EDIVNSVSKLEK 453 (456)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 999999999986
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.5e-22 Score=262.72 Aligned_cols=313 Identities=12% Similarity=0.094 Sum_probs=233.9
Q ss_pred CCCCHHHHHHHHHHHhh-ccCCCCCccchhHHHHHHHHHHHHHHHHHHhC------CCCCcEEEeCCHHHHHHHHHHhhh
Q psy15216 1403 TPIDPRVVDKMIPYLRV-QFGNPASRNHIYGWTAEKAIEKARNEVAQLIY------ADPREIIWTSGATESNNLAIKGAA 1475 (2602)
Q Consensus 1403 ~~~~~~v~eal~~~l~~-~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g------~~~~~iv~t~gaT~al~~al~~l~ 1475 (2602)
.+.++.+.+++.+.+.. ...++.. . .++|+.++++++ +++++|++|+|+|+|++.++.++.
T Consensus 35 ~~~~~~v~~a~~~~~~~~~~~y~~~-----------~-~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~a~~~~~~~~~ 102 (377)
T 3fdb_A 35 FSTCPAVLQAITDAVQREAFGYQPD-----------G-SLLSQATAEFYADRYGYQARPEWIFPIPDVVRGLYIAIDHFT 102 (377)
T ss_dssp SCCCHHHHHHHHHHHHTTCCSSCCS-----------S-CCHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHcCCCCCCCC-----------C-HHHHHHHHHHHHHHhCCCCCHHHEEEeCChHHHHHHHHHHhc
Confidence 46788999999998875 2222221 1 345666777665 678899999999999999999987
Q ss_pred hhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccCCceEEEEeccccccccccC---hH
Q psy15216 1476 HFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---IL 1552 (2602)
Q Consensus 1476 ~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~---l~ 1552 (2602)
++||+|+++.++|+++...+... |++++.++.+++ +|+++|+++++++++++++++|+||||.++| ++
T Consensus 103 ----~~gd~vl~~~~~~~~~~~~~~~~---g~~~~~~~~~~~--~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~ 173 (377)
T 3fdb_A 103 ----PAQSKVIVPTPAYPPFFHLLSAT---QREGIFIDATGG--INLHDVEKGFQAGARSILLCNPYNPLGMVFAPEWLN 173 (377)
T ss_dssp ----CTTCCEEEEESCCTHHHHHHHHH---TCCEEEEECTTS--CCHHHHHHHHHTTCCEEEEESSBTTTTBCCCHHHHH
T ss_pred ----CCCCEEEEcCCCcHhHHHHHHHc---CCEEEEccCCCC--CCHHHHHHHhccCCCEEEEeCCCCCCCCCCCHHHHH
Confidence 89999999999999988777666 999999998876 9999999999999999999999999999997 66
Q ss_pred HHHHHhhhcCCEEEEecccccCc-----ccccCCC---CCccEEEEccccccCCCc--eEEEEE-ecCCCCccccccccC
Q psy15216 1553 EIGELCRSKGVIFHCDAAQAVGK-----IDINIQN---YKVDLMSFSAHKIYGPKG--IGALYI-RRNPRTRIEAQIHGG 1621 (2602)
Q Consensus 1553 ~I~~ia~~~gi~vivD~a~~~g~-----~~~~l~~---~~~D~~v~S~~K~~gp~G--~G~l~~-~~~~~~~l~~~~~g~ 1621 (2602)
+|.++|++||+++|+|++|+... .+.++.. .+.++++.|+||.+|++| +||+++ ++++++.+....
T Consensus 174 ~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~--- 250 (377)
T 3fdb_A 174 ELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTAASVCITITAPSKAWNIAGLKCAQIIFSNPSDAEHWQQLS--- 250 (377)
T ss_dssp HHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHHHHHHEEEEECSTTTTTCGGGCCEEEECCSHHHHHHHHHSC---
T ss_pred HHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHccCCCcEEEEEeChHhccCcchhheEEEeCCHHHHHHHHHHH---
Confidence 77777999999999999997622 2223322 234588999999888777 798887 444444443221
Q ss_pred CccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecC-CcH
Q psy15216 1622 GHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI-EGE 1700 (2602)
Q Consensus 1622 ~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~-~~~ 1700 (2602)
....++++...+.++.++++.....+++.++++.++++++.+.|.+.+|++.+..+... ....+.++.. ...
T Consensus 251 ----~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 323 (377)
T 3fdb_A 251 ----PVIKDGASTLGLIAAEAAYRYGTDFLNQEVAYLKNNHDFLLHEIPKRIPGAKITPMQAT---YLMWIDFRDTTIEG 323 (377)
T ss_dssp ----HHHHCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCEECCCSBC---SEEEEECTTSCCCS
T ss_pred ----HhhcCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCCee---EEEEEECcccCCCH
Confidence 11124667777777777777545567888999999999999999875678887654322 2223444431 123
Q ss_pred HHHHhc---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1701 SLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1701 ~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
++...| +||.+++|..|... ..+++|+|++ ++.+++++++++|++.
T Consensus 324 ~~~~~l~~~~gi~v~~g~~~~~~-----------------~~~~~Ris~~--~~~e~i~~~l~~l~~~ 372 (377)
T 3fdb_A 324 SPSEFFIEKAKVAMNDGAWFGED-----------------GTGFCRLNFA--TSREVLEEAIDRMAKA 372 (377)
T ss_dssp CHHHHHHHHHCEECEEGGGGCGG-----------------GTTEEEEECC--SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCEEecCChhccCC-----------------CCCEEEEEeC--CCHHHHHHHHHHHHHH
Confidence 444443 49999999887642 1389999998 4899999999999873
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A | Back alignment and structure |
|---|
Probab=99.89 E-value=7.5e-22 Score=255.19 Aligned_cols=310 Identities=13% Similarity=0.082 Sum_probs=233.3
Q ss_pred eeccCC--CCCCCHHHHHHHHHHHhhc----cCCCCCccchhHHHHHHHHHHHHHHHHHH------hCCCCCcEEEeCCH
Q psy15216 1396 IVFKDA--TTPIDPRVVDKMIPYLRVQ----FGNPASRNHIYGWTAEKAIEKARNEVAQL------IYADPREIIWTSGA 1463 (2602)
Q Consensus 1396 v~L~~~--~~~~~~~v~eal~~~l~~~----~~np~~~~~~~~~~~~~~~~~lr~~ia~~------~g~~~~~iv~t~ga 1463 (2602)
+.++.+ ..+.++.+.+++.+.++.. ..++.. . ..++|+.++++ +++++++|++|+|+
T Consensus 33 idl~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~----------~-~~~l~~~la~~l~~~~g~~~~~~~v~~~~G~ 101 (369)
T 3cq5_A 33 IRLNTNENPYPPSEALVADLVATVDKIATELNRYPER----------D-AVELRDELAAYITKQTGVAVTRDNLWAANGS 101 (369)
T ss_dssp EECSSCCCCSCCCHHHHHHHHHHHHHHGGGTTSCCCT----------T-CHHHHHHHHHHHHHHHCCCCCGGGEEEESHH
T ss_pred eeccCCCCCCCCCHHHHHHHHHHHHhcccccccCCCc----------c-HHHHHHHHHHhhhhcccCCCChHhEEECCCh
Confidence 455432 2457889999999988652 222221 0 13567777777 45577899999999
Q ss_pred HHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccC-CceEEEEeccc
Q psy15216 1464 TESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS-DTILVSVMLVN 1542 (2602)
Q Consensus 1464 T~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~-~t~lv~l~~~~ 1542 (2602)
+++++.++.++. ++||+|++++++|+++...+... |++++.++.+.++.+|++++++++++ ++++|++++|+
T Consensus 102 ~~al~~~~~~l~----~~gd~Vl~~~~~y~~~~~~~~~~---g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~ 174 (369)
T 3cq5_A 102 NEILQQLLQAFG----GPGRTALGFQPSYSMHPILAKGT---HTEFIAVSRGADFRIDMDVALEEIRAKQPDIVFVTTPN 174 (369)
T ss_dssp HHHHHHHHHHHC----STTCEEEEEESSCTHHHHHHHHT---TCEEEEEECCTTSSCCHHHHHHHHHHHCCSEEEEESSC
T ss_pred HHHHHHHHHHhc----CCCCEEEEcCCChHHHHHHHHHc---CCEEEEecCCcCCCCCHHHHHHHhhccCCCEEEEeCCC
Confidence 999999999986 79999999999999987765544 99999999887778999999999987 89999999999
Q ss_pred cccccccChHHHHHHhhhcCCEEEEecccccCccc---ccC-CCCC-ccEEEEccccccCCCc--eEEEEEecCCCCccc
Q psy15216 1543 NEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKID---INI-QNYK-VDLMSFSAHKIYGPKG--IGALYIRRNPRTRIE 1615 (2602)
Q Consensus 1543 n~tG~~~~l~~I~~ia~~~gi~vivD~a~~~g~~~---~~l-~~~~-~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~ 1615 (2602)
||||.++|+++|.++++.+++++|+|++|+.+... ..+ ...+ .++++.|+||.+|++| +||+++++++++.+.
T Consensus 175 nptG~~~~~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~ 254 (369)
T 3cq5_A 175 NPTGDVTSLDDVERIINVAPGIVIVDEAYAEFSPSPSATTLLEKYPTKLVVSRTMSKAFDFAGGRLGYFVANPAFIDAVM 254 (369)
T ss_dssp TTTCCCCCHHHHHHHHHHCSSEEEEECTTGGGCCSCCGGGGTTTCTTTEEEEEESSSTTSCGGGCCEEEEECTHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHhCCCEEEEECCchhhcCCcchHHHHhhCCCCEEEEEechHhcCCcccceEEEEeCHHHHHHHH
Confidence 99999999999999999999999999999865532 222 2344 6689999999888777 799999876655544
Q ss_pred cccccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEe
Q psy15216 1616 AQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN 1695 (2602)
Q Consensus 1616 ~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~ 1695 (2602)
... ...+++...+.++.++++. ...+++.++++.++++++.+.|.+ +++.+..+ . .....+.++
T Consensus 255 ~~~---------~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~l~~~L~~--~g~~~~~~-~---~~~~~~~~~ 318 (369)
T 3cq5_A 255 LVR---------LPYHLSALSQAAAIVALRH-SADTLGTVEKLSVERVRVAARLEE--LGYAVVPS-E---SNFVFFGDF 318 (369)
T ss_dssp TTS---------CTTCSCHHHHHHHHHHHHT-HHHHHTHHHHHHHHHHHHHHHHHH--HTCEEECC-S---SSEEEEECC
T ss_pred HcC---------CCCCCCHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHh--CCCEECCC-C---CeEEEEECC
Confidence 322 1234666667766677764 235677888899999999999987 46766532 2 123333333
Q ss_pred cCCcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1696 FIEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1696 ~~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
.+..++...| +||.+++|. . .+++|++++ +.+|+++++++|++.
T Consensus 319 -~~~~~l~~~l~~~gi~v~~~~---~-------------------~~~iRis~~---~~~~i~~~~~~l~~~ 364 (369)
T 3cq5_A 319 -SDQHAAWQAFLDRGVLIRDVG---I-------------------AGHLRTTIG---VPEENDAFLDAAAEI 364 (369)
T ss_dssp -SSHHHHHHHHHHTTEECBCCS---C-------------------TTEEEEECC---CHHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHCCEEEEECC---C-------------------CCeEEEEeC---CHHHHHHHHHHHHHH
Confidence 3555666665 899998761 1 178999998 789999999999873
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=5.2e-22 Score=256.19 Aligned_cols=305 Identities=14% Similarity=0.100 Sum_probs=231.1
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCC
Q psy15216 1404 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK 1483 (2602)
Q Consensus 1404 ~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd 1483 (2602)
..++.+.+++.+.++....++.. ...++|+++++++++++++|++|+|+++++++++.++ +||
T Consensus 37 ~~~~~v~~a~~~~~~~~~~y~~~-----------~~~~l~~~la~~~~~~~~~v~~~~g~~~al~~~~~~~------~gd 99 (364)
T 1lc5_A 37 GMPVSVKRALIDNLDCIERYPDA-----------DYFHLHQALARHHQVPASWILAGNGETESIFTVASGL------KPR 99 (364)
T ss_dssp CCCHHHHHHHHHTGGGGGSCCCT-----------TCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHH------CCS
T ss_pred CCCHHHHHHHHHHHHHhhcCCCC-----------CHHHHHHHHHHHHCcCHHHEEECCCHHHHHHHHHHHc------CCC
Confidence 46788999998887653333322 2468899999999998889999999999999998876 469
Q ss_pred EEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcC-hhHHHhhccCCceEEEEeccccccccccC---hHHHHHHhh
Q psy15216 1484 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLIT-LSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIGELCR 1559 (2602)
Q Consensus 1484 ~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id-~d~l~~~i~~~t~lv~l~~~~n~tG~~~~---l~~I~~ia~ 1559 (2602)
+|+++.|+|+++...+... |++++.++.+++..++ ++++.+.+++++++|++++|+||||.++| +++|.++|+
T Consensus 100 ~vl~~~p~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~l~~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~ 176 (364)
T 1lc5_A 100 RAMIVTPGFAEYGRALAQS---GCEIRRWSLREADGWQLTDAILEALTPDLDCLFLCTPNNPTGLLPERPLLQAIADRCK 176 (364)
T ss_dssp EEEEEESCCTHHHHHHHHT---TCEEEEEECCGGGTTCCCTTHHHHCCTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHH
T ss_pred eEEEeCCCcHHHHHHHHHc---CCeEEEEeCCcccccchhHHHHHhccCCCCEEEEeCCCCCCCCCCCHHHHHHHHHHhh
Confidence 9999999999987766554 9999999987522233 57777778888999999999999999999 899999999
Q ss_pred hcCCEEEEecccccCcc----cccC-CCCCccEEEEccccccCCCc--eEEEE-EecCCCCccccccccCCccccCCCCC
Q psy15216 1560 SKGVIFHCDAAQAVGKI----DINI-QNYKVDLMSFSAHKIYGPKG--IGALY-IRRNPRTRIEAQIHGGGHEYGLRSGT 1631 (2602)
Q Consensus 1560 ~~gi~vivD~a~~~g~~----~~~l-~~~~~D~~v~S~~K~~gp~G--~G~l~-~~~~~~~~l~~~~~g~~~~~~~~~gt 1631 (2602)
+||+++|+|++|+.+.. .++. ...+.++++.|+||.+|++| +||++ .++++++.+.+.. ..++
T Consensus 177 ~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~---------~~~~ 247 (364)
T 1lc5_A 177 SLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSDDAAMARMRRQQ---------MPWS 247 (364)
T ss_dssp HHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTTTCTTTCCEEEECCCHHHHHHHHHHS---------CTTC
T ss_pred hcCcEEEEECcChhhccCccchhhHhccCCCEEEEEECchhhcCCccceEEEEECCHHHHHHHHHhC---------CCCC
Confidence 99999999999975432 1222 33567899999999888777 69999 8877666554432 1235
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecCCcHHHHHhc--CCE
Q psy15216 1632 LATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDI 1709 (2602)
Q Consensus 1632 ~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI 1709 (2602)
++...+.++.++|+. ..++++.++++.++++++.+.|.+ .+++.+..+ . .....+.++. +..++...| +||
T Consensus 248 ~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~-~---g~~~~~~~~~-~~~~l~~~l~~~gi 320 (364)
T 1lc5_A 248 VNALAALAGEVALQD-SAWQQATWHWLREEGARFYQALCQ-LPLLTVYPG-R---ANYLLLRCER-EDIDLQRRLLTQRI 320 (364)
T ss_dssp SCHHHHHHHHHGGGC-HHHHHHHHHHHHHHHHHHHHHHHT-STTEEECCC-S---SSEEEEEESC-TTCCHHHHHHTTTE
T ss_pred CCHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHhc-CCCCEECCC-C---CeEEEEECCC-cHHHHHHHHHHCCc
Confidence 666777777677764 345778888889999999999987 678887532 2 2233344442 233455555 799
Q ss_pred EEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1710 AVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1710 ~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
.+++|..|... ..+++||+++ +.+++++++++|++
T Consensus 321 ~v~~g~~~~~~-----------------~~~~iRis~~---~~~~~~~l~~~l~~ 355 (364)
T 1lc5_A 321 LIRSCANYPGL-----------------DSRYYRVAIR---SAAQNERLLAALRN 355 (364)
T ss_dssp ECEECTTSTTC-----------------CTTEEEEECC---CHHHHHHHHHHHHH
T ss_pred EEeeCcccCCC-----------------CCCEEEEEeC---CHHHHHHHHHHHHH
Confidence 99998876421 1379999986 78999999999987
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.5e-22 Score=257.78 Aligned_cols=299 Identities=15% Similarity=0.099 Sum_probs=226.2
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCC
Q psy15216 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK 87 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd 87 (2602)
++++.+.+++.+.+...+.+|.. ..+++|+++|+++|+++++|++|+|+|+|+++++.++. ||
T Consensus 28 ~~~~~v~~a~~~~~~~~~~y~~~-----------~~~~lr~~la~~~~~~~~~i~~t~g~~~al~~~~~~l~------gd 90 (350)
T 3fkd_A 28 GDKDHLEKHLVENLNCIRHYPEP-----------DAGTLRQMLAKRNSVDNNAILVTNGPTAAFYQIAQAFR------GS 90 (350)
T ss_dssp SCCHHHHHHHHHTGGGGGSCCCT-----------TCHHHHHHHHHHTTCCGGGEEEESHHHHHHHHHHHHTT------TC
T ss_pred CCCHHHHHHHHHhHhHHhcCCCC-----------cHHHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHHHHC------CC
Confidence 67889999999888655556543 12478999999999998999999999999999998864 89
Q ss_pred EEEEcCCCCcccHHHHHHHHhCCcEEEEecc-CCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHhcC
Q psy15216 88 HIITVQTEHKSVLDSIRKLENDGFRVTYLKP-KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKG 166 (2602)
Q Consensus 88 ~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~-~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~~g 166 (2602)
+|+++.|.|+++...+... |++++.++. ++...+++ +++++|++++|+||||.++|+++|.++++.++
T Consensus 91 ~Vi~~~p~~~~~~~~~~~~---g~~~~~v~~~~~~~~~~~--------~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~ 159 (350)
T 3fkd_A 91 RSLIAIPSFAEYEDACRMY---EHEVCFYPSNEDIGEADF--------SNMDFCWLCNPNNPDGRLLQRTEILRLLNDHP 159 (350)
T ss_dssp EEEEEESCCHHHHHHHHHT---TCEEEEEETTSCGGGSCC--------TTCSEEEEESSCTTTCCCCCHHHHHHHHHHCT
T ss_pred EEEEeCCCcHHHHHHHHHc---CCeEEEEecCCccccCcc--------CCCCEEEEeCCCCCcCCCCCHHHHHHHHHhCC
Confidence 9999999999987666554 999999998 65444544 68999999999999999999999999998765
Q ss_pred -CEEEEeccccccccc-----ccCCCCCccEEEeccccccCCCC--cEEEEEecCCCCcccceecCCCccccccccCcch
Q psy15216 167 -VIFHCDAAQAVGKID-----INIQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLAT 238 (2602)
Q Consensus 167 -~~livD~a~a~g~~~-----~dl~~~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~ 238 (2602)
.++|+|++|+..... ..+...+.++++.|+||.+|++| +||+++++++++.+.... ..++++.
T Consensus 160 ~~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~~~~~---------~~~~~~~ 230 (350)
T 3fkd_A 160 DTTFVLDQSYVSFTTEEVIRPADIKGRKNLVMVYSFSHAYGIPGLRIGYIVANKDFMKRVAAFS---------TPWAVNA 230 (350)
T ss_dssp TSEEEEECTTTTSCSSCCCCGGGGTTCSSEEEEEESHHHHSCGGGCCEEEECCHHHHHHHHTTC---------CTTCSCH
T ss_pred CCEEEEECchhhhccCcchhhHHhhcCCCEEEEecCchhccCcchheEeEEeCHHHHHHHHHhC---------CCCCCCH
Confidence 799999998743211 12233455688999999888776 799999887766665432 2346677
Q ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcccChhHHHHHh---CCeEE
Q psy15216 239 HQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI---KDIAV 315 (2602)
Q Consensus 239 ~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L---~gI~v 315 (2602)
....++.++|+....+.+...+.. ++++++.+.|.+ +|++.+..+. ...+.+.++..+..++.+.| +||.+
T Consensus 231 ~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~l~~~L~~-~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~L~~~~gi~v 304 (350)
T 3fkd_A 231 LAIEAAKFILIHPAQFTLPIRKWQ-RNTVDFITALNR-LDGVEVHPSG----TTFFLLRLKKGTAAELKKYMLEEYNMLI 304 (350)
T ss_dssp HHHHHHHHHHHCTTTTCCCHHHHH-HHHHHHHHHHHH-STTEEECCCS----SSEEEEEESSSCHHHHHHHHHHTTCEEC
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHH-HHHHHHHHHHhc-CCCcEECCCC----CcEEEEECCCCCHHHHHHHHHHHCCEEE
Confidence 777777677763222233333333 888899999977 6898876432 23444666654666777666 69999
Q ss_pred cccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 316 SSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 316 ~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
++|..|... ..+++||+++ +.+++++++++|++.
T Consensus 305 ~~g~~f~~~-----------------~~~~iRis~~---~~~~~~~l~~al~~~ 338 (350)
T 3fkd_A 305 RDASNFRGL-----------------DESYVRITTQ---RPAQNQLFIKALETF 338 (350)
T ss_dssp EECTTSTTC-----------------CTTEEEEECC---CHHHHHHHHHHHHHH
T ss_pred EeCccCCCC-----------------CCCEEEEEcC---CHHHHHHHHHHHHHH
Confidence 999877531 2489999987 889999999999964
|
| >3n8e_A Stress-70 protein, mitochondrial; beta-sandwich, helix, substrate binding domain, structural G consortium, SGC, chaperone; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.3e-23 Score=231.76 Aligned_cols=147 Identities=39% Similarity=0.593 Sum_probs=130.8
Q ss_pred CCceeeeccccccceEeeeccEEEEEEecCCCCCCCcEEEEEeccccccceeeeEeecCccccccCceeeeeEecCCCCC
Q psy15216 1005 DDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPM 1084 (2602)
Q Consensus 1005 ~~~~~~~dv~~~~~gi~~~~~~~~~ii~~~t~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~i~~~ 1084 (2602)
...+.+.||+|+|||+++.+|.|.+||||||+||+++++.|+|..|+|+.+.|.|||||+..+.+|..||+|.|+|+||+
T Consensus 17 ~~~f~l~DV~P~slGie~~gg~~~~lI~rnt~iP~~k~~~f~T~~DnQ~~v~I~VyqGE~~~~~dn~~LG~f~l~gipp~ 96 (182)
T 3n8e_A 17 NLYFQSMDVTPLSLGIETLGGVFTKLINRNTTIPTKKSQVFSTAADGQTQVEIKVCQGEREMAGDNKLLGQFTLIGIPPA 96 (182)
T ss_dssp -------CBCSSCEEEECTTSBEEEEECTTCBSSEEEEEEECCSSTTCCCEEEEEEESSCSBGGGSEEEEEEEECCCCCC
T ss_pred CCCEEEEEecCCEEEEEEeCCEEEEEEeCCCccCEEEEEEEEECCCCccEEEEEEEEcCccccccCceEEEEEEcCCCCC
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccEEEEEEEECCCeeEEEEEEEecCCceEEEEEecCCCCCHHHHHhhhhccccCCCchhHHHHhcc
Q psy15216 1085 PAGRARIKVTYQVDADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKNGAIFNENSGISLCDALLKNS 1153 (2602)
Q Consensus 1085 ~~g~~~i~v~f~~d~~g~l~v~a~~~~~g~~~~~~~~~~~~l~~~~i~~~~~~~~~~g~~~~~~~~~~~ 1153 (2602)
|+|.++|+|+|++|.||+|+|+|.++.||++..++|....+||++||++|+ ++++.+..-+..+...
T Consensus 97 p~G~~~IeVtf~iD~nGiL~VsA~d~~tg~~~~i~I~~~~~Ls~eei~~mi--~~a~~~~~eD~~~~~~ 163 (182)
T 3n8e_A 97 PRGVPQIEVTFDIDANGIVHVSAKDKGTGREQQIVIQSSGGLSKDDIENMV--KNAEKYAEEDRRKKER 163 (182)
T ss_dssp CTTCSCEEEEEEECTTCCEEEEEEETTTCCEEEEEESCCCCCCHHHHHHHH--HHHHHSHHHHHHHHHH
T ss_pred CCCCeeEEEEEEEecCCEEEEEEEEcCCCCEeeEEEecCccCCHHHHHHHH--HHHHHHHHhHHHHHHH
Confidence 999999999999999999999999999999999999999889999999986 7776665555554333
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.5e-22 Score=265.96 Aligned_cols=324 Identities=15% Similarity=0.121 Sum_probs=233.1
Q ss_pred CCCHHHHHHHHHHHhh-ccCCCCCccchhHHHHHHHHHHHHHHHHHHh----CC--CCC-cEEEeCCHHHHHHHHHHhhh
Q psy15216 1404 PIDPRVVDKMIPYLRV-QFGNPASRNHIYGWTAEKAIEKARNEVAQLI----YA--DPR-EIIWTSGATESNNLAIKGAA 1475 (2602)
Q Consensus 1404 ~~~~~v~eal~~~l~~-~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~----g~--~~~-~iv~t~gaT~al~~al~~l~ 1475 (2602)
+.++.+.+++.+.++. ...++.. . ...++|+++++++ |. +++ +|++|+|+++|+..++.++.
T Consensus 38 ~~~~~v~~a~~~~~~~~~~~y~~~------~----g~~~l~~~la~~~~~~~g~~~~~~~~v~~t~g~~~al~~~~~~~~ 107 (411)
T 2o0r_A 38 DGPPKMLQAAQDAIAGGVNQYPPG------P----GSAPLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAAAVLGLV 107 (411)
T ss_dssp CCCHHHHHHHHHHHHTTCCSCCCT------T----CCHHHHHHHHHHHHHHHCCCCCTTTSEEEEEHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHhcCCCCCCCC------C----CCHHHHHHHHHHHHHHcCCCCCCCceEEEeCCHHHHHHHHHHHhc
Confidence 4678899999998865 2222221 0 1234555555554 74 577 89999999999999999986
Q ss_pred hhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCC---CCcChhHHHhhccCCceEEEEeccccccccccC--
Q psy15216 1476 HFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN---GLITLSQLEEKICSDTILVSVMLVNNEIGVIQP-- 1550 (2602)
Q Consensus 1476 ~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~---~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~-- 1550 (2602)
++||+|+++.++|+++...+.. .|++++.++.+++ +.+|+++|++++++++++|++++|+||||.++|
T Consensus 108 ----~~gd~Vl~~~~~y~~~~~~~~~---~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~v~l~~~~nptG~~~~~~ 180 (411)
T 2o0r_A 108 ----EPGSEVLLIEPFYDSYSPVVAM---AGAHRVTVPLVPDGRGFALDADALRRAVTPRTRALIINSPHNPTGAVLSAT 180 (411)
T ss_dssp ----CTTCEEEEEESCCTTHHHHHHH---TTCEEEEEECEEETTEEECCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHH
T ss_pred ----CCCCEEEEeCCCcHhHHHHHHH---cCCEEEEeeccccccCCCCCHHHHHHhhccCceEEEEeCCCCCCCCCCCHH
Confidence 7999999999999998766554 4999999987653 568999999999999999999999999999988
Q ss_pred -hHHHHHHhhhcCCEEEEecccccCcc----cccC---CC-CCccEEEEccccccCCCc--eEEEEEecCCCCccccccc
Q psy15216 1551 -ILEIGELCRSKGVIFHCDAAQAVGKI----DINI---QN-YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIH 1619 (2602)
Q Consensus 1551 -l~~I~~ia~~~gi~vivD~a~~~g~~----~~~l---~~-~~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~~ 1619 (2602)
+++|.++|++||+++|+|++|+.+.. +.++ .. .+.|+++.|+||.+|++| +|++++++++++.+.....
T Consensus 181 ~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~ 260 (411)
T 2o0r_A 181 ELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKMFNCTGWKIGWACGPAELIAGVRAAKQ 260 (411)
T ss_dssp HHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCTTTCEEEEECCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhccCCCCCEEEEeechhhcCCccceEEEEeeCHHHHHHHHHHHh
Confidence 58999999999999999999975432 1222 11 467999999999888888 8999998776655543221
Q ss_pred cCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEec---
Q psy15216 1620 GGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF--- 1696 (2602)
Q Consensus 1620 g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~--- 1696 (2602)
...++.+...+.++.++|+....++++.++++.++++++.+.|.+ . ++.+..+.. +....+.++.
T Consensus 261 -------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~---g~~~~~~~~~~~~ 328 (411)
T 2o0r_A 261 -------YLSYVGGAPFQPAVALALDTEDAWVAALRNSLRARRDRLAAGLTE-I-GFAVHDSYG---TYFLCADPRPLGY 328 (411)
T ss_dssp -------HHTSCCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH-H-TCEECCCCB---SSEEEEECGGGTC
T ss_pred -------hccCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHH-c-CCEecCCCe---eEEEEEecCCCCC
Confidence 112234455566666777644556788889999999999999987 3 677654321 2233444443
Q ss_pred CCcHHHHHhc---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1697 IEGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1697 ~~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
.+..++...| +||.+++|..|......+++.+. + ...+++||+++ ++.+++++++++|++
T Consensus 329 ~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~--~----~~~~~iRis~~--~~~e~i~~~~~~l~~ 391 (411)
T 2o0r_A 329 DDSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQA--D----VWNHLVRFTFC--KRDDTLDEAIRRLSV 391 (411)
T ss_dssp CCHHHHHHHHHHHHSEECEEGGGGSCCC----------C----CGGGCEEEECC--SCHHHHHHHHHHHGG
T ss_pred CCHHHHHHHHHHhCCEEEcChhhhCCCccccccccc--c----CCCCeEEEEec--CCHHHHHHHHHHHHH
Confidence 2345666544 59999999877432101111110 0 02378999997 489999999999997
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.89 E-value=2e-22 Score=265.44 Aligned_cols=320 Identities=15% Similarity=0.166 Sum_probs=243.4
Q ss_pred CCCCCHHHHHHHHHHHhhc-cCCCCCccchhHHHHHHHHHHHHHHHHHHhC--CCCCcEEEeCCHHHHHHHHHHhhhhhh
Q psy15216 1402 TTPIDPRVVDKMIPYLRVQ-FGNPASRNHIYGWTAEKAIEKARNEVAQLIY--ADPREIIWTSGATESNNLAIKGAAHFY 1478 (2602)
Q Consensus 1402 ~~~~~~~v~eal~~~l~~~-~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g--~~~~~iv~t~gaT~al~~al~~l~~~~ 1478 (2602)
..+.++.+.+++.+.++.. ++++.. ..++.+++++++++.++ +++++|+|++|+++|++.++.++.
T Consensus 72 ~~~~~~~v~~a~~~~~~~~~~~y~~~--------~~~l~~~l~~~l~~~~g~~~~~~~v~~~~g~~ea~~~a~~~~~--- 140 (421)
T 3l8a_A 72 DFLPVPEIKEAIINYGREHIFGYNYF--------NDDLYQAVIDWERKEHDYAVVKEDILFIDGVVPAISIALQAFS--- 140 (421)
T ss_dssp CSCCCHHHHHHHHHHHHHCCSSCBCC--------CHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHS---
T ss_pred CCCCCHHHHHHHHHHHhcCCcCCCCC--------CHHHHHHHHHHHHHHhCCCCCHHHEEEcCCHHHHHHHHHHHhc---
Confidence 3467889999999988752 222221 14567788888888888 677899999999999999999986
Q ss_pred ccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccC-C--CCCcChhHHHhhcc-CCceEEEEeccccccccccC---h
Q psy15216 1479 KKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK-N--NGLITLSQLEEKIC-SDTILVSVMLVNNEIGVIQP---I 1551 (2602)
Q Consensus 1479 ~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~-~--~~~id~d~l~~~i~-~~t~lv~l~~~~n~tG~~~~---l 1551 (2602)
++||+|+++.+.|+++...+... |.+++.++.+ . ++.+|+++|+++++ +++++|++++|+||||.++| +
T Consensus 141 -~~gd~Vi~~~~~y~~~~~~~~~~---g~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~vil~~p~nptG~~~~~~~l 216 (421)
T 3l8a_A 141 -EKGDAVLINSPVYYPFARTIRLN---DHRLVENSLQIINGRFEIDFEQLEKDIIDNNVKIYLLCSPHNPGGRVWDNDDL 216 (421)
T ss_dssp -CTEEEEEEEESCCHHHHHHHHHT---TEEEEEEECEEETTEEECCHHHHHHHHHHTTEEEEEEESSBTTTTBCCCHHHH
T ss_pred -CCCCEEEECCCCcHHHHHHHHHC---CCEEEeccccccCCCeeeCHHHHHHHhhccCCeEEEECCCCCCCCCcCCHHHH
Confidence 89999999999999987766655 9999999875 2 34589999999998 89999999999999999954 8
Q ss_pred HHHHHHhhhcCCEEEEecccccCc----ccccCCC-----CCccEEEEccccccCCCc--eEEEEEe-cCCCCccccccc
Q psy15216 1552 LEIGELCRSKGVIFHCDAAQAVGK----IDINIQN-----YKVDLMSFSAHKIYGPKG--IGALYIR-RNPRTRIEAQIH 1619 (2602)
Q Consensus 1552 ~~I~~ia~~~gi~vivD~a~~~g~----~~~~l~~-----~~~D~~v~S~~K~~gp~G--~G~l~~~-~~~~~~l~~~~~ 1619 (2602)
++|.++|++||+++|+|++|+... ...++.. .+..+++.|++|.+|++| +|+++++ +++.+.+.+...
T Consensus 217 ~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~~~G~~~~~~~~l~~~~~~~~~ 296 (421)
T 3l8a_A 217 IKIAELCKKHGVILVSDEIHQDLALFGNTHHSLNTLDASYKDFTIILSSATKTFNIAGTKNSFAIIQNESLRRKFQYRQL 296 (421)
T ss_dssp HHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCTTGGGTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCEEEEEccccccccCCCCCccHHHcCchhcCcEEEEEeChhhccCchhheEeEEcCCHHHHHHHHHHHH
Confidence 899999999999999999987422 1112211 245588899999877666 6999988 555555543321
Q ss_pred cCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEec--C
Q psy15216 1620 GGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF--I 1697 (2602)
Q Consensus 1620 g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~--~ 1697 (2602)
....++++...+.++.++++....++++..++..++++++.+.|.+ .+++.+..+... ....+.++. .
T Consensus 297 ------~~~~~~~n~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~i~~~~~~~~---~~~~v~~~~~~~ 366 (421)
T 3l8a_A 297 ------ANNQHEVPTVGMIATQAAFQYGKPWLEELKTVIEGNIKLVIKELEA-KTKIKVMEPEGT---YLVWLDFSAYAI 366 (421)
T ss_dssp ------HTTCSCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH-HCSCEEECCSBS---SEEEEECGGGTC
T ss_pred ------hcccCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHh-CCCceEeCCCee---EEEEEeccccCC
Confidence 1223467778888888888755566788899999999999999987 478887754322 122244443 3
Q ss_pred CcHHHHHhc---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1698 EGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1698 ~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
+..++...| +||.+++|..|... ..+++||+++ ++.+++++++++|++.
T Consensus 367 ~~~~l~~~l~~~~gi~v~~g~~f~~~-----------------~~~~iRi~~~--~~~~~i~~~l~~l~~~ 418 (421)
T 3l8a_A 367 AQPQLSEKLQNEAKVVLNDGAHFGKE-----------------GKYFARLNVA--TPKNTVQEALSRIISV 418 (421)
T ss_dssp CTTHHHHHHHHTTCEECEEGGGGCGG-----------------GTTEEEEECC--SCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCEEEECchhhCCC-----------------CCCEEEEEec--CCHHHHHHHHHHHHHH
Confidence 556666655 49999999877532 2389999998 5899999999999873
|
| >3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.4e-22 Score=247.46 Aligned_cols=203 Identities=22% Similarity=0.313 Sum_probs=174.8
Q ss_pred HHHHHHHHHHHHHHHHHhhccccceEEEeeCCCCCHHHHHHHHHHHHHcCCceeEeechhHHHHHHhhhccCCCCceEEE
Q psy15216 2139 IEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAV 2218 (2602)
Q Consensus 2139 ~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~l~~Aa~~AGl~~~~li~EP~AAAl~y~~~~~~~~~~vlV 2218 (2602)
.+....+|+++++.++...+.....+++|+|++|...+|++++++++.+|+++..++.||+|++++|+.. ..+|
T Consensus 70 ~~~~~~~l~~~~~~~~~~~~~~~~~~v~tvp~~~~~~~~~~~~~~~~~~g~~~~~i~~e~~A~a~~~~~~------~~~v 143 (272)
T 3h1q_A 70 YIGAIQIVRELKAKVERLLGSELFQAATAIPPGTVGRNAEACGHVVAGAGLELVTLVDEPVAAARALGIN------DGIV 143 (272)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCCCEEEEECCSCC---CTTHHHHHHHHTTCEEEEEECHHHHHHHHHTCS------SEEE
T ss_pred HHHHHHHHHHHHHHHHHhcCCccCeEEEEcCCCCCHHHHHHHHHHHHHcCCeeeecccHHHHHHHHHcCC------CEEE
Confidence 4566788999999999888888889999999999999999999999999999999999999999988653 2589
Q ss_pred EEeCCceEEEEEEEEeCCEEEEEEEecCCCCchhHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhcccceEEE
Q psy15216 2219 YDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKL 2298 (2602)
Q Consensus 2219 ~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~~ 2298 (2602)
+|+||||+|+++++ ++.+ + ......+||.+||+.|.+++... ...++++|+.++
T Consensus 144 iDiGggst~~~~~~--~g~~--~-~~~~~~~Gg~~~~~~l~~~l~~~--------------~~~ae~~k~~~~------- 197 (272)
T 3h1q_A 144 VDIGGGTTGIAVIE--KGKI--T-ATFDEPTGGTHLSLVLAGSYKIP--------------FEEAETIKKDFS------- 197 (272)
T ss_dssp EEECSSCEEEEEEE--TTEE--E-EECCBSCCHHHHHHHHHHHHTCC--------------HHHHHHHHHSST-------
T ss_pred EEECCCcEEEEEEE--CCEE--E-EEecCCCcHHHHHHHHHHHhCCC--------------HHHHHHHHHhcC-------
Confidence 99999999999986 3432 2 34668999999999988876411 357888898775
Q ss_pred EEEecCCceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccceEEEEeCccchHHHHHHHHhhcCCcccCCCC
Q psy15216 2299 NVKLSDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSID 2378 (2602)
Q Consensus 2299 ~i~~~~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~~~~~~ 2378 (2602)
+++++++++.+.++++.+.+.+.++..+ +++.|+|+||+|++|.+++++++.|+.++..+.+
T Consensus 198 --------------~~~~~~~~~~~~~~~i~~~i~~~l~~~~----~~~~ivL~GG~a~~~~l~~~l~~~l~~~v~~~~~ 259 (272)
T 3h1q_A 198 --------------RHREIMRVVRPVIEKMALIVKEVIKNYD----QTLPVYVVGGTAYLTGFSEEFSRFLGKEVQVPIH 259 (272)
T ss_dssp --------------THHHHHHHHHHHHHHHHHHHHHHTTTSC----SSCCEEEESGGGGSTTHHHHHHHHHSSCCBCCSS
T ss_pred --------------CHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCEEEEECCccchhhHHHHHHHHhCCCccccCC
Confidence 6889999999999999999999998764 4789999999999999999999999999999999
Q ss_pred ccchhhhHHHHHh
Q psy15216 2379 PDKAVVFGAAIQA 2391 (2602)
Q Consensus 2379 p~~aVa~GAa~~a 2391 (2602)
|++++|+|||++|
T Consensus 260 p~~a~a~Gaal~a 272 (272)
T 3h1q_A 260 PLLVTPLGIALFG 272 (272)
T ss_dssp GGGHHHHHHHTTC
T ss_pred hHHHHHHHHHhcC
Confidence 9999999999875
|
| >1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.7e-22 Score=263.41 Aligned_cols=306 Identities=16% Similarity=0.138 Sum_probs=225.5
Q ss_pred CcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHHH-HHhCC
Q psy15216 32 NHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDG 110 (2602)
Q Consensus 32 ~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~-~~~~G 110 (2602)
.|.+++...+..+++|+++++++|++ +.++++ ++++|+++++.++. ++||+|+++.+.|+++...+.. ++..|
T Consensus 105 ~~~y~r~~~~~~~~l~~~lA~l~g~~-~~v~~~-sG~~Ai~~al~~l~----~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G 178 (445)
T 1qgn_A 105 SFEYGRYGNPTTVVLEEKISALEGAE-STLLMA-SGMCASTVMLLALV----PAGGHIVTTTDCYRKTRIFIETILPKMG 178 (445)
T ss_dssp CCCBGGGCCHHHHHHHHHHHHHHTCS-EEEEES-CHHHHHHHHHHHHS----CSSCEEEEETTSCHHHHHHHHHTGGGGT
T ss_pred CccccCCCChHHHHHHHHHHHHhCCC-cEEEeC-CHHHHHHHHHHHHh----CCCCEEEEcCCCchhHHHHHHHHHHHcC
Confidence 34555555677899999999999986 455555 55599999999887 7999999999999998776653 46679
Q ss_pred cEEEEeccCCCCccChHHHHhhccCCc-eEEEEecccCcccccccHHHHHHHHHhcCCEEEEecccccccccccCCCCCc
Q psy15216 111 FRVTYLKPKNNGLITLSQLEEKICSDT-ILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKV 189 (2602)
Q Consensus 111 ~~v~~v~~~~~~~ld~e~l~~~i~~~t-klv~i~~~~npTG~~~~l~~I~~la~~~g~~livD~a~a~g~~~~dl~~~~~ 189 (2602)
+++++++.+ |+++|+++++++| ++|++++|+||||.+.|+++|+++||+||+++|+|++|+.+... ....+++
T Consensus 179 ~~v~~v~~~-----d~~~l~~ai~~~tv~lV~le~p~NptG~v~dl~~I~~la~~~g~~livD~a~~~~~~~-~~~~~g~ 252 (445)
T 1qgn_A 179 ITATVIDPA-----DVGALELALNQKKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQ-KALALGA 252 (445)
T ss_dssp CEEEEECSS-----CHHHHHHHHHHSCEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTC-CTTTTTC
T ss_pred CEEEEeCCC-----CHHHHHHHhccCCCCEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccC-CccccCC
Confidence 999999864 8999999999999 99999999999999999999999999999999999999877543 2345689
Q ss_pred cEEEeccccccCCCC---cEEEEEecCCCCcccceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy15216 190 DLMSFSAHKIYGPKG---IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQ 266 (2602)
Q Consensus 190 D~~~~S~~K~~Gp~G---~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~ 266 (2602)
|++++|+||++|+.| +|++++++++++.+.+... ...++++....+.+..+++. +....+++.+++
T Consensus 253 Div~~S~sK~~gg~gd~~~G~l~~~~~l~~~l~~~~~-------~~g~~~~~~~a~~~~~~l~~----l~~r~~~~~~~a 321 (445)
T 1qgn_A 253 DLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLHH-------ILGGALNPNAAYLIIRGMKT----LHLRVQQQNSTA 321 (445)
T ss_dssp SEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHHHH-------HHCCCCCHHHHHHHHHHGGG----HHHHHHHHHHHH
T ss_pred EEEEECCcccccccccceEEEEEECHHHHHHHHHHHH-------HhCCCCCHHHHHHHHHhHHH----HHHHHHHHHHHH
Confidence 999999999988887 8999999876665543221 11223444443333344432 334445566667
Q ss_pred HHHHHHHhhccCce-EEeCCC--CC-----------CCCceEEEEEccc--ChhHHHHHhC--CeEEcccccCCCCC---
Q psy15216 267 KRLYNGLMESIEEI-YINGDM--NN-----------RIPHNLNISFNFI--EGESLLMAIK--DIAVSSGSACTSAS--- 325 (2602)
Q Consensus 267 ~~l~~~L~~~~~g~-~l~~~~--~~-----------~~~~~~~~~~~~~--~~~~~~~~L~--gI~v~~g~~~~~~~--- 325 (2602)
+++.+.|.+ .|++ .+..|. .. ..+.++.|.+++. +...++..|+ ++.++.|..|+...
T Consensus 322 ~~l~~~L~~-~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~~~~~~~~~l~~l~~~~i~~s~G~~~sl~~~p~ 400 (445)
T 1qgn_A 322 LRMAEILEA-HPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDLLTTAKFVDALKIPYIAPSFGGCESIVDQPA 400 (445)
T ss_dssp HHHHHHHHT-CTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCHHHHHHHHHHCSSSEECSCCCSSSCEEECHH
T ss_pred HHHHHHHhc-CCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECCCHHHHHHHHHhCCCceEeccCCCCceeeeccc
Confidence 888888877 6777 454331 11 1345666666642 2456777774 88889998886321
Q ss_pred -----CChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 326 -----LEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 326 -----~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
..++..+..+|+++ +.||+|+| .||++.+++.|++.
T Consensus 401 ~~~h~~~~~~~~~~~g~~~----~~iRlSvG----~Edid~li~~L~~a 441 (445)
T 1qgn_A 401 IMSYWDLSQSDRAKYGIMD----NLVRFSFG----VEDFDDLKADILQA 441 (445)
T ss_dssp HHHSTTSCHHHHHTTTCCS----SEEEEECC----SSCHHHHHHHHHHH
T ss_pred ccccccCCHHHHHhcCCCC----CeEEEEec----cCCHHHHHHHHHHH
Confidence 12344566778753 89999999 36799999998863
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=3.1e-22 Score=262.93 Aligned_cols=318 Identities=15% Similarity=0.128 Sum_probs=232.3
Q ss_pred CCCHHHHHHHHHHHhhh--cCCCCCCCcchhhhHHHHHHHHHHHHHHHhC------CCC-CcEEEeCCHHHHHHHHHHhc
Q psy15216 8 PIDPRVVDKMIPYLRVQ--FGNPASRNHIYGWTAEKAIEKARNEVAQLIY------ADP-REIIWTSGATESNNLAIKGA 78 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~--~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g------~~~-~~Iv~t~g~T~al~~~~~~l 78 (2602)
++|+.+.+++.+.+... ..++.. . ...++|+.++++++ +++ ++|++|+|+++|++.++.++
T Consensus 36 ~~~~~v~~a~~~~~~~~~~~~y~~~------~----g~~~l~~~la~~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~~ 105 (410)
T 3e2y_A 36 SPPSYVKEELSKAAFIDNMNQYTRG------F----GHPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGSLFNSIQGL 105 (410)
T ss_dssp CCCHHHHHHHHHHHTCGGGGSCCCT------T----CCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCccccCCCCC------C----ChHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHHHHHHHh
Confidence 67899999999988642 223221 0 12445566666554 566 79999999999999999998
Q ss_pred ccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccC-----------CCCccChHHHHhhccCCceEEEEecccC
Q psy15216 79 AHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK-----------NNGLITLSQLEEKICSDTILVSVMLVNN 147 (2602)
Q Consensus 79 ~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~-----------~~~~ld~e~l~~~i~~~tklv~i~~~~n 147 (2602)
. ++||+|+++.+.|+++...+... |++++.++.+ .++.+|++++++++++++++|++++|+|
T Consensus 106 ~----~~gd~vl~~~p~~~~~~~~~~~~---g~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~n 178 (410)
T 3e2y_A 106 V----DPGDEVIIMVPFYDCYEPMVRMA---GAVPVFIPLRSKPTDGMKWTSSDWTFDPRELESKFSSKTKAIILNTPHN 178 (410)
T ss_dssp C----CTTCEEEEEESCCTTHHHHHHHT---TCEEEEEECEECCCCSSCCBGGGEECCHHHHHTTCCTTEEEEEEESSCT
T ss_pred c----CCCCEEEEeCCCchhhHHHHHHc---CCEEEEEeccccccccccccccCCcCCHHHHHhhcCCCceEEEEeCCCC
Confidence 7 89999999999999987766554 9999998875 2456899999999999999999999999
Q ss_pred cccccc---cHHHHHHHHHhcCCEEEEeccccccc----ccccCC----CCCccEEEeccccccCCCC--cEEEEEecCC
Q psy15216 148 EIGVIQ---PILEIGELCRSKGVIFHCDAAQAVGK----IDINIQ----NYKVDLMSFSAHKIYGPKG--IGALYIRRNP 214 (2602)
Q Consensus 148 pTG~~~---~l~~I~~la~~~g~~livD~a~a~g~----~~~dl~----~~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~ 214 (2602)
|||.++ ++++|+++|++||+++|+|++|+... .+..+. ..+.++++.|+||.+|++| +||+++++++
T Consensus 179 ptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~ 258 (410)
T 3e2y_A 179 PLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITIGSAGKTFSVTGWKLGWSIGPAHL 258 (410)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEEHHHHSSCGGGCCEEEECCHHH
T ss_pred CCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCCccCeEEEEecchhhcCCCCceEEEEEECHHH
Confidence 999997 58889999999999999999997422 112222 1234588899999888777 8999998877
Q ss_pred CCcccceecCCCccccccccCcchhHHHHHHHHHHH-------HHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCC
Q psy15216 215 RTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRL-------ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMN 287 (2602)
Q Consensus 215 ~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~-------~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~ 287 (2602)
++.+..... ...++++.+...++.++++. ...++++..++++++++++.+.|.+ . ++.+..+..
T Consensus 259 ~~~~~~~~~-------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~ 329 (410)
T 3e2y_A 259 IKHLQTVQQ-------NSFYTCATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRMVRLLNS-V-GLKPIVPDG 329 (410)
T ss_dssp HHHHHHHHH-------TTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHT-T-TCEEEBCSB
T ss_pred HHHHHHHHH-------hhccCCChHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHH-C-CCeecCCCc
Confidence 666654321 12345666666666677752 1345788888999999999999987 3 777665433
Q ss_pred CCCCceEEEEEcccC------------hhHHHHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCC
Q psy15216 288 NRIPHNLNISFNFIE------------GESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGR 352 (2602)
Q Consensus 288 ~~~~~~~~~~~~~~~------------~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~ 352 (2602)
. .+.++.+.... ..++...+ +||.+.+|..|.... ......+++||+++.
T Consensus 330 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~------------~~~~~~~~iRis~~~ 394 (410)
T 3e2y_A 330 G---YFIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSK------------SKPHFEKLVRFCFIK 394 (410)
T ss_dssp S---SEEEEECGGGCCCCTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGSCTT------------THHHHTTEEEEECCC
T ss_pred c---EEEEEEchhhhcccccccccccCHHHHHHHHHHHcCEEEeCchhhCCCC------------CCCCCCCEEEEEEcC
Confidence 2 33344443311 12454443 599999998885420 001124899999885
Q ss_pred CCCHHHHHHHHHHHHh
Q psy15216 353 FTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 353 ~~t~edid~li~~L~~ 368 (2602)
+++++++++++|++
T Consensus 395 --~~e~l~~~l~~l~~ 408 (410)
T 3e2y_A 395 --KDSTLDAAEEIFRA 408 (410)
T ss_dssp --CHHHHHHHHHHHHT
T ss_pred --CHHHHHHHHHHHHh
Confidence 99999999999985
|
| >1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=4.3e-22 Score=259.18 Aligned_cols=316 Identities=15% Similarity=0.140 Sum_probs=233.4
Q ss_pred CCCHHHHHHHHHHHhhcc-CCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCC
Q psy15216 1404 PIDPRVVDKMIPYLRVQF-GNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRG 1482 (2602)
Q Consensus 1404 ~~~~~v~eal~~~l~~~~-~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~g 1482 (2602)
+.++.+.+++.+.++... +++.+ .+..+ ......++|+++++++|++ +.++++++|+|+..++.++. ++|
T Consensus 53 ~~~~~v~~a~~~~~~~~~~~~~~~-~~~~g--~~~~~~~l~~~la~~~g~~--~~i~~~sGt~a~~~~~~~~~----~~g 123 (384)
T 1bs0_A 53 SHHPQIIRAWQQGAEQFGIGSGGS-GHVSG--YSVVHQALEEELAEWLGYS--RALLFISGFAANQAVIAAMM----AKE 123 (384)
T ss_dssp GGCHHHHHHHHHHHHHHCSCCCSB-TTTTC--CCHHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHHC----CTT
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCc-CcccC--ChHHHHHHHHHHHHHhCCC--cEEEeCCcHHHHHHHHHHhC----CCC
Confidence 467889999999887622 22211 11111 2245788999999999985 56666666999999998876 899
Q ss_pred CEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccCC---ceEEEEeccccccccccChHHHHHHhh
Q psy15216 1483 KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSD---TILVSVMLVNNEIGVIQPILEIGELCR 1559 (2602)
Q Consensus 1483 d~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~~---t~lv~l~~~~n~tG~~~~l~~I~~ia~ 1559 (2602)
|+|+++.+.|+++...+... |++++.++. +|+++|++++++. +++|++++++||||.++|+++|.++|+
T Consensus 124 d~v~~~~~~~~~~~~~~~~~---g~~~~~~~~-----~d~~~l~~~l~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~ 195 (384)
T 1bs0_A 124 DRIAADRLSHASLLEAASLS---PSQLRRFAH-----NDVTHLARLLASPCPGQQMVVTEGVFSMDGDSAPLAEIQQVTQ 195 (384)
T ss_dssp CEEEEETTCCHHHHHHHHTS---SSEEEEECT-----TCHHHHHHHHHSCCSSCEEEEEESBCTTTCCBCCHHHHHHHHH
T ss_pred cEEEEcccccHHHHHHHHHc---CCCEEEeCC-----CCHHHHHHHHHhcCCCCeEEEEeCCCCCCCCccCHHHHHHHHH
Confidence 99999999999887766544 999998873 5899999999753 789999999999999999999999999
Q ss_pred hcCCEEEEecccccCccc------ccCCCCCccEEEEccccccCCCceEEEEEecCCCCccccccccCCccccCCCCCcc
Q psy15216 1560 SKGVIFHCDAAQAVGKID------INIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLA 1633 (2602)
Q Consensus 1560 ~~gi~vivD~a~~~g~~~------~~l~~~~~D~~v~S~~K~~gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~ 1633 (2602)
+||+++|+|++|+.+... ......++|++++|+||.+||+| |++++++++++.+.+....+ . ..++++
T Consensus 196 ~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~~~G-G~~~~~~~~~~~l~~~~~~~----~-~~~~~~ 269 (384)
T 1bs0_A 196 QHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGFGVSG-AAVLCSSTVADYLLQFARHL----I-YSTSMP 269 (384)
T ss_dssp HTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSSTTSSCC-EEEEECHHHHHHHHHHCHHH----H-SSBCCC
T ss_pred HcCcEEEEECCcccceecCCCCchHHhcCCCCcEEEeeccchhhccC-cEEEeCHHHHHHHHHhchhh----h-cCCCCC
Confidence 999999999999866421 11112357899999999889988 99999887666554321000 0 112466
Q ss_pred hhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEec-CCcHHHHHhc--CCE
Q psy15216 1634 THQIVGMGEAFRLARI-EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGESLLMAI--KDI 1709 (2602)
Q Consensus 1634 ~~~~~al~~aL~~~~~-~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~L--~gI 1709 (2602)
...+.++.++++.... +.++..+++.++++++.+.|.+ . ++.+..+ . ..+..+.++. .+..++...| +||
T Consensus 270 ~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~-~---~~~~~~~~~~~~~~~~l~~~l~~~gi 343 (384)
T 1bs0_A 270 PAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQD-L-PFTLADS-C---SAIQPLIVGDNSRALQLAEKLRQQGC 343 (384)
T ss_dssp HHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTT-S-SCEECSC-C---SSBCCEEEESHHHHHHHHHHHHHTTE
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh-c-CCcccCC-C---CCEEEEEeCCHHHHHHHHHHHHHCCc
Confidence 7777777778886543 4578889999999999999987 3 6666521 1 2222344442 2345566665 799
Q ss_pred EEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1710 AVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1710 ~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
.++++..+..+ ...+++||+++.++|.+++++++++|++
T Consensus 344 ~v~~~~~~~~~----------------~~~~~~Ri~~~~~~~~~~i~~~~~~l~~ 382 (384)
T 1bs0_A 344 WVTAIRPPTVP----------------AGTARLRLTLTAAHEMQDIDRLLEVLHG 382 (384)
T ss_dssp ECCEECTTSSC----------------TTCEEECCBCCTTCCHHHHHHHHHHHHH
T ss_pred EEEeecCCCCC----------------CCCceEEEEEcCCCCHHHHHHHHHHHHh
Confidence 99988754321 1237899999999999999999999986
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=3.2e-22 Score=261.83 Aligned_cols=316 Identities=13% Similarity=0.099 Sum_probs=231.3
Q ss_pred CCCCHHHHHHHHHHHhhc-cCCCCCccchhHHHHHHHHHHHHHHHHHH----hC--CCCCcEEEeCCHHHHHHHHHHhhh
Q psy15216 1403 TPIDPRVVDKMIPYLRVQ-FGNPASRNHIYGWTAEKAIEKARNEVAQL----IY--ADPREIIWTSGATESNNLAIKGAA 1475 (2602)
Q Consensus 1403 ~~~~~~v~eal~~~l~~~-~~np~~~~~~~~~~~~~~~~~lr~~ia~~----~g--~~~~~iv~t~gaT~al~~al~~l~ 1475 (2602)
.+.++.+.+++.+.+... ..++. . ..++|+.++++ +| +++++|++|+|+++|++.++.++.
T Consensus 43 ~~~~~~v~~a~~~~~~~~~~~y~~------~------~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~a~~~~~~~l~ 110 (399)
T 1c7n_A 43 FKNPPELIEGLKKYLDETVLGYTG------P------TEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREFT 110 (399)
T ss_dssp SCCCHHHHHHHHHHHHHCCCSSBC------C------CHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHhcCCCCCCC------C------cHHHHHHHHHHHHHHhCCCCChhhEEEcCCHHHHHHHHHHHhc
Confidence 356788999999888642 11211 1 34555666655 47 567899999999999999999986
Q ss_pred hhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccC-CC--CCcChhHHHhhcc-CCceEEEEeccccccccccC-
Q psy15216 1476 HFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK-NN--GLITLSQLEEKIC-SDTILVSVMLVNNEIGVIQP- 1550 (2602)
Q Consensus 1476 ~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~-~~--~~id~d~l~~~i~-~~t~lv~l~~~~n~tG~~~~- 1550 (2602)
++||+|+++.|+|+++...+.. .|++++.++.+ .+ +.+|+++|+++++ +++++|++++|+||||.++|
T Consensus 111 ----~~gd~vl~~~p~~~~~~~~~~~---~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~ 183 (399)
T 1c7n_A 111 ----KPGDGVIIITPVYYPFFMAIKN---QERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRVWKK 183 (399)
T ss_dssp ----CTTCEEEECSSCCTHHHHHHHT---TTCEEEECCCEEETTEEECCHHHHHHHHTCTTEEEEEEESSBTTTTBCCCH
T ss_pred ----CCCCEEEEcCCCcHhHHHHHHH---cCCEEEecccccCCCCEEEcHHHHHHHhccCCCcEEEEcCCCCCCCcCcCH
Confidence 7999999999999998766544 49999999875 33 3589999999998 78999999999999999999
Q ss_pred --hHHHHHHhhhcCCEEEEecccccCc----ccccCCCC-----CccEEEEccccccCCCc--eEEEEEec-CCCCcccc
Q psy15216 1551 --ILEIGELCRSKGVIFHCDAAQAVGK----IDINIQNY-----KVDLMSFSAHKIYGPKG--IGALYIRR-NPRTRIEA 1616 (2602)
Q Consensus 1551 --l~~I~~ia~~~gi~vivD~a~~~g~----~~~~l~~~-----~~D~~v~S~~K~~gp~G--~G~l~~~~-~~~~~l~~ 1616 (2602)
+++|.++|++||+++|+|++|+... .+.++..+ +.++++.|+||.+|++| +|++++++ ++++.+.+
T Consensus 184 ~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~l~~ 263 (399)
T 1c7n_A 184 DELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTK 263 (399)
T ss_dssp HHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEECCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCEEEEEccccccccCCCCcccHHHcCccccCcEEEEEeChhhccccchheEEEEECCHHHHHHHHH
Confidence 9999999999999999999997532 12233222 34688899999888777 79999974 45555544
Q ss_pred ccccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEec
Q psy15216 1617 QIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF 1696 (2602)
Q Consensus 1617 ~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~ 1696 (2602)
.... +..++++...+.++.++++.....+++.++++.++++++.+.|.+.+|++.+..+.. .....+.++.
T Consensus 264 ~~~~------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~---~~~~~~~~~~ 334 (399)
T 1c7n_A 264 SRDA------TSGMPFTTLGYKACEICYKECGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLIEG---TYLQWIDFRA 334 (399)
T ss_dssp HHHH------TTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSBCCCCSB---SSEEEEECGG
T ss_pred HHhh------cccCCCCHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhhCCCCeEecCCc---eEEEEEEccc
Confidence 3211 122356777777776777643456788888899999999999976356765543221 1222344443
Q ss_pred --CCcHHHHHhc---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1697 --IEGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1697 --~~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
.+..++...| +||.+++|..|... ..+++||+++.. .++++++++.|++.
T Consensus 335 ~~~~~~~~~~~l~~~~gi~v~~g~~~~~~-----------------~~~~iRis~~~~--~~~l~~~l~~l~~~ 389 (399)
T 1c7n_A 335 LKMDHKAMEEFMIHKAQIFFDEGYIFGDG-----------------GIGFERINLAAP--SSVIQESLERLNKA 389 (399)
T ss_dssp GCCCHHHHHHHHHHTTCCCCEEGGGGCGG-----------------GTTEEEEECCSC--HHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCEEEeCccccCCC-----------------CCCeEEEEeccC--HHHHHHHHHHHHHH
Confidence 3455666555 59999998877421 137899999864 78999999999873
|
| >2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.6e-22 Score=262.29 Aligned_cols=326 Identities=13% Similarity=0.080 Sum_probs=232.3
Q ss_pred ccCCCCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCC-CCcEEE-eCCHHHHHHHHHHhhh
Q psy15216 1398 FKDATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYAD-PREIIW-TSGATESNNLAIKGAA 1475 (2602)
Q Consensus 1398 L~~~~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~-~~~iv~-t~gaT~al~~al~~l~ 1475 (2602)
+..+..+.++.+++++.+.. ++..+............+++|+++++++|++ +++|++ |+|+|+|+++++.++.
T Consensus 44 ~~~~~~~~~~~v~~a~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~i~~~t~g~t~al~~~~~~l~ 118 (398)
T 2fyf_A 44 FGSGPSKVRLEQLQTLTTTA-----AALFGTSHRQAPVKNLVGRVRSGLAELFSLPDGYEVILGNGGATAFWDAAAFGLI 118 (398)
T ss_dssp CCSSSCCCCHHHHHGGGTTT-----TTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTTCEEEEEETCHHHHHHHHHHHTC
T ss_pred ccCCCCCCCHHHHHHHhhcC-----CCccCcCcCCHHHHHHHHHHHHHHHHHhCCCCCceEEEeCCchhHHHHHHHHHhc
Confidence 34555678888888886631 1111111123344567889999999999997 468998 9999999999999986
Q ss_pred hhhccCCCEEEEcCCCCcchHHHHHHHHhC--CcEEEEeccCCCCCcChhHHHhhccCCceEEEEeccccccccccChHH
Q psy15216 1476 HFYKKRGKHIITVQTEHKSVLDSIRKLEND--GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILE 1553 (2602)
Q Consensus 1476 ~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~--G~~v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~ 1553 (2602)
++| .+++....|.... ...+... |++++.++.+.+...+. .++++|++|++++++||||.++|+++
T Consensus 119 ----~~g-v~~v~~~~~~~~~--~~~~~~~~~g~~~~~v~~~~g~~~~~-----~i~~~~~~v~~~~~~nptG~~~~~~~ 186 (398)
T 2fyf_A 119 ----DKR-SLHLTYGEFSAKF--ASAVSKNPFVGEPIIITSDPGSAPEP-----QTDPSVDVIAWAHNETSTGVAVAVRR 186 (398)
T ss_dssp ----SSC-EEEEECSHHHHHH--HHHHHHCTTSCCCEEEECCTTCCCCC-----CCCTTCSEEEEESEETTTTEECCCCC
T ss_pred ----CCC-eEEEeCCHHHHHH--HHHHHHhCCCCceEEEecCCCCCCCc-----cccCCCCEEEEeCcCCCcceecchHH
Confidence 677 2333444443211 1223334 78888888874332332 26789999999999999999999999
Q ss_pred HHHHhhhcCCEEEEecccccCcccccCCCCCccEEEEccccccCCC-ceEEEEEecCCCCcccc---------ccccCCc
Q psy15216 1554 IGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPK-GIGALYIRRNPRTRIEA---------QIHGGGH 1623 (2602)
Q Consensus 1554 I~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K~~gp~-G~G~l~~~~~~~~~l~~---------~~~g~~~ 1623 (2602)
|.++ +|+++|+|++|+.+..++++. ++|++++|+||++|++ |+|++++++++++.+.+ .+..++.
T Consensus 187 i~~~---~~~~vivD~a~~~~~~~~~~~--~~di~~~s~sK~~~~~gg~g~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 261 (398)
T 2fyf_A 187 PEGS---DDALVVIDATSGAGGLPVDIA--ETDAYYFAPQKNFASDGGLWLAIMSPAALSRIEAIAATGRWVPDFLSLPI 261 (398)
T ss_dssp CTTC---C-CEEEEECTTTTTTSCCCGG--GCSEEEECTTSTTCSCSSEEEEEECHHHHHHHHHHHHTTCCCCGGGCHHH
T ss_pred hhhh---cCCeEEEEeccccCCcccCcc--cCcEEEEecCcccCCCCceEEEEECHHHHHHhhcccccCCCCCcEEehHH
Confidence 8876 899999999999988777654 3799999999988876 59999999877665521 1111110
Q ss_pred -c----ccCCCCCcchhHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHhhcCCcEEEeCC-CCCCCCceEEEEEe
Q psy15216 1624 -E----YGLRSGTLATHQIVGMGEAFRLARI-E-MKEELKRILFLQKRLYNGLMESIEEIYINGD-MNNRIPHNLNISFN 1695 (2602)
Q Consensus 1624 -~----~~~~~gt~~~~~~~al~~aL~~~~~-~-~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~-~~~~~~~~~~~~~~ 1695 (2602)
. .....++++...++++.++++.... + ++++.+++.++++++.+.|.+ ++++.+..+ +....+....+.++
T Consensus 262 ~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~~~~~~~~~~~~~~ 340 (398)
T 2fyf_A 262 AVENSLKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQRLYSWAQE-RPYTTPFVTDPGLRSQVVGTIDFV 340 (398)
T ss_dssp HHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHH-STTEEESCCSGGGBCSSEEEEEEC
T ss_pred HhhhcccCCCCCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHH-cCCceeccCChhhcCCcEEEEECC
Confidence 0 1244578888889889899986543 3 889999999999999999988 678888742 21223335555664
Q ss_pred -cCCcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1696 -FIEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1696 -~~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
+.+..++...| +||.+++|... ...+++|||++.++|.+|+++++++|++.
T Consensus 341 ~~~~~~~l~~~L~~~gI~v~~g~~~-------------------~~~~~iRis~~~~~t~e~i~~~~~~l~~~ 394 (398)
T 2fyf_A 341 DDVDAGTVAKILRANGIVDTEPYRK-------------------LGRNQLRVAMFPAVEPDDVSALTECVDWV 394 (398)
T ss_dssp TTSCHHHHHHHHHHTTCBCCSCCTT-------------------TCSSEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHCCcEEecCccc-------------------CCCCEEEEEecCCCCHHHHHHHHHHHHHH
Confidence 34566777666 78988765211 01278999999999999999999999873
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.6e-22 Score=265.39 Aligned_cols=316 Identities=16% Similarity=0.157 Sum_probs=231.9
Q ss_pred CCHHHHHHHHHHHhhhc---CCCCCCCcchhhhHHHHHHHHHHHHHHHh----C--CCCCcEEEeCCHHHHHHHHHHhcc
Q psy15216 9 IDPRVVDKMIPYLRVQF---GNPASRNHIYGWTAEKAIEKARNEVAQLI----Y--ADPREIIWTSGATESNNLAIKGAA 79 (2602)
Q Consensus 9 ~p~~v~~a~~~~l~~~~---~~p~~~~~~~~~~~~~~~~~~r~~lA~~~----g--~~~~~Iv~t~g~T~al~~~~~~l~ 79 (2602)
+++.+.+++.+.+.... .++.. ....++|+.+++++ | +++++|++|+|+|+|+++++.++.
T Consensus 50 ~~~~v~~a~~~~~~~~~~~~~y~~~----------~~~~~l~~~la~~~~~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~ 119 (407)
T 2zc0_A 50 PRAVLGEIAKEVLEKEPKSVMYTPA----------NGIPELREELAAFLKKYDHLEVSPENIVITIGGTGALDLLGRVLI 119 (407)
T ss_dssp CHHHHHHHHHHHHHHCGGGGSCCCT----------TCCHHHHHHHHHHHHHHSCCCCCGGGEEEESHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHhhccccccCCCC----------CCCHHHHHHHHHHHHHhcCCCCCcceEEEecCHHHHHHHHHHHhc
Confidence 55778888888876521 02111 12356677777777 8 567899999999999999999987
Q ss_pred cccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhcc----C--CceEE-EEecccCccccc
Q psy15216 80 HFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKIC----S--DTILV-SVMLVNNEIGVI 152 (2602)
Q Consensus 80 ~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~----~--~tklv-~i~~~~npTG~~ 152 (2602)
++||+|+++.+.|+++...+. ..|++++.++.++++ +|+++|+++++ + ++++| ++++++||||.+
T Consensus 120 ----~~gd~vl~~~p~~~~~~~~~~---~~g~~~~~v~~~~~~-~d~~~l~~~l~~~~~~~~~~~~v~~~~~~~nptG~~ 191 (407)
T 2zc0_A 120 ----DPGDVVITENPSYINTLLAFE---QLGAKIEGVPVDNDG-MRVDLLEEKIKELKAKGQKVKLIYTIPTGQNPMGVT 191 (407)
T ss_dssp ----CTTCEEEEEESCCHHHHHHHH---TTTCEEEEEEEETTE-ECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCC
T ss_pred ----CCCCEEEEeCCChHHHHHHHH---HcCCEEEEcccCCCC-CCHHHHHHHHHhhhcccCCceEEEECCCCCCCCCcC
Confidence 799999999999998766554 459999999987655 99999999997 6 78887 578999999999
Q ss_pred ccHH---HHHHHHHhcCCEEEEecccccccc----cccCCC---CCccEEEeccccccCCCC--cEEEEEecCCCCcccc
Q psy15216 153 QPIL---EIGELCRSKGVIFHCDAAQAVGKI----DINIQN---YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEA 220 (2602)
Q Consensus 153 ~~l~---~I~~la~~~g~~livD~a~a~g~~----~~dl~~---~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~ 220 (2602)
+|.+ +|+++|++||+++|+|++|+.+.. ...+.. .+.++++.|+||++| +| +||+++++++++.+.+
T Consensus 192 ~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~G~r~G~~~~~~~~~~~~~~ 270 (407)
T 2zc0_A 192 MSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALDNEGRVIVAGTLSKVLG-TGFRIGWIIAEGEILKKVLM 270 (407)
T ss_dssp CCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGGGGCSSCCEEEEEESTTTTC-TTSCCEEEECCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChhhcCCCCCEEEEcccccccC-CCcceEEEecCHHHHHHHHH
Confidence 9987 899999999999999999976432 112222 234588899999888 56 8999998877666654
Q ss_pred eecCCCccccccccCcchhHHHHHHHHHHH--HH-HhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEE
Q psy15216 221 QIHGGGHEYGLRSGTLATHQIVGMGEAFRL--AR-IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNIS 297 (2602)
Q Consensus 221 ~~~g~~~~~~~~~gt~~~~~~~al~~al~~--~~-~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~ 297 (2602)
....+ ..+++.....++.++++. .. .++++..+++.++++++.+.|.+..+++.+..+.. ..++.+.
T Consensus 271 ~~~~~-------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~---~~~~~~~ 340 (407)
T 2zc0_A 271 QKQPI-------DFCAPAISQYIALEYLKRGYFEKYHLEGALLGYKEKRDIMLKALENHLPNAEFTKPIA---GMFVMFF 340 (407)
T ss_dssp HHTTT-------TSSSCHHHHHHHHHHHHTTHHHHHTTTTHHHHHHHHHHHHHHHHHHHCTTSCBCCCSB---SSEEEEE
T ss_pred HHHhh-------cCCCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEecCCC---cEEEEEE
Confidence 33211 122355555566666663 23 45677888889999999999977456766544322 2344455
Q ss_pred Ec-ccChhHHHHHh--C-CeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 298 FN-FIEGESLLMAI--K-DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 298 ~~-~~~~~~~~~~L--~-gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
++ ..+..++...| + ||.+++|..|.+. ....+++||+++.. +++++++++++|++.
T Consensus 341 ~~~~~~~~~l~~~l~~~~gi~v~~g~~~~~~---------------~~~~~~iRis~~~~-~~~~i~~~~~~l~~~ 400 (407)
T 2zc0_A 341 LPEGADGISFANELMEREGVVVVPGKPFYTD---------------ESGKNAIRLNFSRP-SKEEIPIGIKKLAKL 400 (407)
T ss_dssp CSTTCCHHHHHHHHHHHTCEECBCSGGGCSS---------------SCCTTEEEEECSSS-CTTHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHhCCeEEECchhccCC---------------CCCCCeEEEEeCCC-CHHHHHHHHHHHHHH
Confidence 54 24566777777 5 9999999877542 01137899999876 899999999999864
|
| >4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A | Back alignment and structure |
|---|
Probab=99.89 E-value=3.9e-23 Score=238.63 Aligned_cols=136 Identities=45% Similarity=0.669 Sum_probs=128.7
Q ss_pred eeeeccccccceEeeeccEEEEEEecCCCCCCCcEEEEEeccccccceeeeEeecCccccccCceeeeeEecCCCCCCCC
Q psy15216 1008 FLLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAG 1087 (2602)
Q Consensus 1008 ~~~~dv~~~~~gi~~~~~~~~~ii~~~t~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~i~~~~~g 1087 (2602)
+++.||+|+||||++.+|.|.+||||||+||+++++.|+|..|||+.+.|.|||||+..+.+|..||+|.|+|+||+|+|
T Consensus 1 ~~l~DV~p~slGie~~gg~~~~lI~rnt~iP~~k~~~f~t~~dnQ~~v~I~VyqGe~~~~~dn~~Lg~f~l~gipp~p~G 80 (219)
T 4e81_A 1 VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRG 80 (219)
T ss_dssp CCCCCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCCCSTT
T ss_pred CeEEEecCcEEEEEEeCCEEEEEEeCcCcccEeEEEEEEeCCCCCceEEEEEEEcCCcccccCCEEEEEEEeCCCCCCCC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEEEEECCCeeEEEEEEEecCCceEEEEEecCCCCCHHHHHhhhhccccCCCch
Q psy15216 1088 RARIKVTYQVDADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKNGAIFNENSGISL 1145 (2602)
Q Consensus 1088 ~~~i~v~f~~d~~g~l~v~a~~~~~g~~~~~~~~~~~~l~~~~i~~~~~~~~~~g~~~ 1145 (2602)
.++|+|+|+||.||+|+|+|.++.||++..++|...++||++||++|+ ++++-+..
T Consensus 81 ~~~IeVtf~iD~nGiL~V~a~d~~tg~~~~i~I~~~~~Ls~eeI~~m~--~~a~~~~~ 136 (219)
T 4e81_A 81 MPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMV--RDAEANAE 136 (219)
T ss_dssp CSCEEEEEEECTTCCEEEEEEETTTCCEEEEEECTTCSCCHHHHHHHH--HHHHHTHH
T ss_pred CceEEEEEEeCCCCCEeeeeeccccCccceEeeeccccccHHHHHHHH--HHHHHhhh
Confidence 999999999999999999999999999999999998889999999987 55555433
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.89 E-value=6.1e-22 Score=258.22 Aligned_cols=316 Identities=12% Similarity=0.112 Sum_probs=231.0
Q ss_pred CCCCHHHHHHHHHHHhhc-cCCCCCccchhHHHHHHHHHH-HHHHHHHHh----C--CCCCcEEEeCCHHHHHHHHHHhh
Q psy15216 1403 TPIDPRVVDKMIPYLRVQ-FGNPASRNHIYGWTAEKAIEK-ARNEVAQLI----Y--ADPREIIWTSGATESNNLAIKGA 1474 (2602)
Q Consensus 1403 ~~~~~~v~eal~~~l~~~-~~np~~~~~~~~~~~~~~~~~-lr~~ia~~~----g--~~~~~iv~t~gaT~al~~al~~l 1474 (2602)
.+.++.+.+++.+.++.. ..++.. ..+ +|+.+++++ | +++++|++|+|+++|+++++.++
T Consensus 40 ~~~~~~v~~a~~~~~~~~~~~y~~~------------~~~~lr~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l 107 (390)
T 1d2f_A 40 FATAPCIIEALNQRLMHGVFGYSRW------------KNDEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQW 107 (390)
T ss_dssp SCCCHHHHHHHHHHHTTCCCCCCCS------------CCHHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHhCCCCCCCCC------------ChHHHHHHHHHHHHHhcCCCCCHHHEEEcCCHHHHHHHHHHHh
Confidence 356789999999988641 122211 234 666666665 6 67789999999999999999998
Q ss_pred hhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCC---CCcChhHHHhhccC-CceEEEEeccccccccccC
Q psy15216 1475 AHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN---GLITLSQLEEKICS-DTILVSVMLVNNEIGVIQP 1550 (2602)
Q Consensus 1475 ~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~---~~id~d~l~~~i~~-~t~lv~l~~~~n~tG~~~~ 1550 (2602)
. ++||+|+++.|+|+++...+... |++++.++.+++ +.+|+++|++++++ ++++|++++|+||||.++|
T Consensus 108 ~----~~gd~vl~~~p~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~l~~p~nptG~~~~ 180 (390)
T 1d2f_A 108 S----ETGEGVVIHTPAYDAFYKAIEGN---QRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWT 180 (390)
T ss_dssp S----CTTCEEEEEESCCHHHHHHHHHT---TCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEESSCTTTCCCCC
T ss_pred c----CCCCEEEEcCCCcHHHHHHHHHC---CCEEEEeecccCCCccccCHHHHHHHhccCCCeEEEEeCCCCCCCcCcC
Confidence 7 79999999999999987766544 999999987643 24899999999986 8999999999999999999
Q ss_pred ---hHHHHHHhhhcCCEEEEecccccCc----ccccCCCCC---ccEEEEccccccCCCc--eEEEEEe-cCCCCccccc
Q psy15216 1551 ---ILEIGELCRSKGVIFHCDAAQAVGK----IDINIQNYK---VDLMSFSAHKIYGPKG--IGALYIR-RNPRTRIEAQ 1617 (2602)
Q Consensus 1551 ---l~~I~~ia~~~gi~vivD~a~~~g~----~~~~l~~~~---~D~~v~S~~K~~gp~G--~G~l~~~-~~~~~~l~~~ 1617 (2602)
+++|.++|++||+++|+|++|+... ...++..+. .|. +.|+||.+|++| +|+++++ +++++.+...
T Consensus 181 ~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~-~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~ 259 (390)
T 1d2f_A 181 CDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVARGDWAL-LTSGSKSFNIPALTGAYGIIENSSSRDAYLSA 259 (390)
T ss_dssp TTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCCSSEEE-EECSHHHHTCGGGCCEEEEECSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcCHHHcchhhHhh-ccCccHhhcccChhheEEEECCHHHHHHHHHH
Confidence 8899999999999999999997632 222332222 266 899999888777 7999996 4555555433
Q ss_pred cccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEec-
Q psy15216 1618 IHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF- 1696 (2602)
Q Consensus 1618 ~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~- 1696 (2602)
..+ ....++++...+.++.++++.....+++.++++.++++++.+.|.+.+|++.+..+.. +....+.++.
T Consensus 260 ~~~-----~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~---~~~~~~~~~~~ 331 (390)
T 1d2f_A 260 LKG-----RDGLSSPSVLALTAHIAAYQQGAPWLDALRIYLKDNLTYIADKMNAAFPELNWQIPQS---TYLAWLDLRPL 331 (390)
T ss_dssp HHT-----TSCCCSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCCCCSB---CSEEEEECGGG
T ss_pred Hhh-----hcccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEecCCc---cEEEEEEcccc
Confidence 210 1223467777777777777754456788888999999999999976456765543221 1222344443
Q ss_pred -CCcHHHHHhc---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1697 -IEGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1697 -~~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
.+..++...| +||.+++|..|... ..+++||+++. +.++++++++.|++.
T Consensus 332 ~~~~~~l~~~l~~~~gi~v~~g~~f~~~-----------------~~~~~Ris~~~--~~~~l~~~l~~l~~~ 385 (390)
T 1d2f_A 332 NIDDNALQKALIEQEKVAIMPGYTYGEE-----------------GRGFVRLNAGC--PRSKLEKGVAGLINA 385 (390)
T ss_dssp CCCHHHHHHHHHHTTCEECEEGGGGCGG-----------------GTTEEEEECCS--CHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcCEEeeCccccCCC-----------------CCCeEEEEecC--CHHHHHHHHHHHHHH
Confidence 3555666555 59999998877421 13789999986 578999999999863
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.89 E-value=5.3e-22 Score=259.63 Aligned_cols=317 Identities=14% Similarity=0.123 Sum_probs=223.8
Q ss_pred CCCCHHHHHHHHHHHhh-----ccCCCCCccchhHHHHHHHHHHHHHHHHHHhC--CCCCcEEEeCCHHHHHHHHHHhhh
Q psy15216 1403 TPIDPRVVDKMIPYLRV-----QFGNPASRNHIYGWTAEKAIEKARNEVAQLIY--ADPREIIWTSGATESNNLAIKGAA 1475 (2602)
Q Consensus 1403 ~~~~~~v~eal~~~l~~-----~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g--~~~~~iv~t~gaT~al~~al~~l~ 1475 (2602)
.+.++.+.+++.+.++. ...++.. ....++.+.+.+++.+.+| +++++|++|+|+|+|++.++.++.
T Consensus 47 ~~~~~~v~~a~~~~~~~~~~~~~~~y~~~------~g~~~lr~~la~~l~~~~g~~~~~~~i~~~~g~~~al~~~~~~l~ 120 (398)
T 3ele_A 47 IPAPQIVNDTIKELVTDYDSVALHGYTSA------QGDVETRAAIAEFLNNTHGTHFNADNLYMTMGAAASLSICFRALT 120 (398)
T ss_dssp SCCCHHHHHHHHHHHHHSCHHHHHSCCCT------TCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHhcCCccccCCcCCC------CCcHHHHHHHHHHHHHHhCCCCChHHEEEccCHHHHHHHHHHHHc
Confidence 35678899999998875 2233221 0112233344444444445 577899999999999999999987
Q ss_pred hhhccCC-CEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCC-CCCcChhHHHhhccCCceEEEEeccccccccccC---
Q psy15216 1476 HFYKKRG-KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP--- 1550 (2602)
Q Consensus 1476 ~~~~~~g-d~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~-~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~--- 1550 (2602)
++| |+|+++.|.|+++...+... |++++.++.++ ++.+|+++|++++++++++|++++|+||||.++|
T Consensus 121 ----~~g~d~vl~~~p~~~~~~~~~~~~---g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~ 193 (398)
T 3ele_A 121 ----SDAYDEFITIAPYFPEYKVFVNAA---GARLVEVPADTEHFQIDFDALEERINAHTRGVIINSPNNPSGTVYSEET 193 (398)
T ss_dssp ----CSTTCEEEEESSCCTHHHHHHHHT---TCEEEEECCCTTTSSCCHHHHHHTCCTTEEEEEECSSCTTTCCCCCHHH
T ss_pred ----CCCCCEEEEeCCCchhhHHHHHHc---CCEEEEEecCCcCCcCCHHHHHHHhCcCCCEEEEcCCCCCCCCCCCHHH
Confidence 899 99999999999987766554 99999999875 5679999999999999999999999999999999
Q ss_pred hHHHHHHhhh------cCCEEEEecccccCc-----ccccCCCCCccEEEEccccccCCCc--eEEEEEecCCCCc--cc
Q psy15216 1551 ILEIGELCRS------KGVIFHCDAAQAVGK-----IDINIQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTR--IE 1615 (2602)
Q Consensus 1551 l~~I~~ia~~------~gi~vivD~a~~~g~-----~~~~l~~~~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~--l~ 1615 (2602)
+++|+++|++ ||+++|+|++|+... .+......+.++++.|+||.+|++| +||+++++++.+. +.
T Consensus 194 l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~ 273 (398)
T 3ele_A 194 IKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFVTKYYDNTLVCYSYSKSLSLPGERIGYVLVPDEVYDKAELY 273 (398)
T ss_dssp HHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCCGGGTCSSEEEEEESTTTSSCTTTCCEEEECCTTSTTHHHHH
T ss_pred HHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcCChHhhcCCeEEEEehhhcCCCccceeEEEEEcchhhhHHHHH
Confidence 6677789998 999999999987522 2222233456788999999888777 8999999876552 11
Q ss_pred cccccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEe
Q psy15216 1616 AQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN 1695 (2602)
Q Consensus 1616 ~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~ 1695 (2602)
...... .......+++.....++..+++.. ..++++.++++++.+.|.+ . ++.+..+.. .....+.++
T Consensus 274 ~~~~~~--~~~~~~~~~~~~~~~a~~~~l~~~-----~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~---~~~~~~~~~ 341 (398)
T 3ele_A 274 AAVCGA--GRALGYVCAPSLFQKMIVKCQGAT-----GDINAYKENRDLLYEGLTR-I-GYHCFKPDG---AFYMFVKAL 341 (398)
T ss_dssp HHHHHH--HHHTTCCCSCHHHHHHHTTCTTCC-----CCHHHHHHHHHHHHHHHHH-H-TCCEECCSB---SSEEEEECS
T ss_pred HHHHHH--hhhccccCCCHHHHHHHHHHhcCH-----HHHHHHHHHHHHHHHHHHH-c-CCeecCCCe---eEEEEEEcC
Confidence 111000 001112234444444443443311 1356677788888888877 2 555554322 122334444
Q ss_pred cCCcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1696 FIEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1696 ~~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
..+..++...| +||.+++|..|..+ +++||+++ ++.+++++++++|++.
T Consensus 342 ~~~~~~~~~~l~~~gi~v~~g~~~~~~-------------------~~iRis~~--~~~e~i~~~l~~l~~~ 392 (398)
T 3ele_A 342 EDDSNAFCEKAKEEDVLIVAADGFGCP-------------------GWVRISYC--VDREMIKHSMPAFEKI 392 (398)
T ss_dssp SSCHHHHHHHHHTTTEECEESGGGTCT-------------------TEEEEECC--SCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHCCEEEeCccccCCC-------------------CeEEEEec--CCHHHHHHHHHHHHHH
Confidence 44566666666 79999999887543 79999997 6999999999999873
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.3e-22 Score=265.07 Aligned_cols=318 Identities=14% Similarity=0.126 Sum_probs=232.7
Q ss_pred CCCHHHHHHHHHHHhh--ccCCCCCccchhHHHHHHHHHHHHHHHHHHh----C--CCCCcEEEeCCHHHHHHHHHHhhh
Q psy15216 1404 PIDPRVVDKMIPYLRV--QFGNPASRNHIYGWTAEKAIEKARNEVAQLI----Y--ADPREIIWTSGATESNNLAIKGAA 1475 (2602)
Q Consensus 1404 ~~~~~v~eal~~~l~~--~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~----g--~~~~~iv~t~gaT~al~~al~~l~ 1475 (2602)
+.++.+.+++.+.++. ...++.. ....++|+++++++ | .++++|++|+|+++|+..++.++.
T Consensus 70 ~~~~~v~~a~~~~~~~~~~~~Y~~~----------~g~~~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~~al~~~~~~l~ 139 (447)
T 3b46_A 70 SPPQFAIKEAQKALDIPMVNQYSPT----------RGRPSLINSLIKLYSPIYNTELKAENVTVTTGANEGILSCLMGLL 139 (447)
T ss_dssp CCCHHHHHHHHHHTTSGGGGSCCCT----------TCCHHHHHHHHHHHTTTTTSCCCGGGEEEESHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHhCcCCCCCCCC----------CCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHHc
Confidence 4678899999988864 1222221 01356777777776 4 356789999999999999999987
Q ss_pred hhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCC------------CCCcChhHHHhhccCCceEEEEecccc
Q psy15216 1476 HFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN------------NGLITLSQLEEKICSDTILVSVMLVNN 1543 (2602)
Q Consensus 1476 ~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~------------~~~id~d~l~~~i~~~t~lv~l~~~~n 1543 (2602)
++||+|++++|.|+++...+... |++++.++.++ ++.+|+++|++++++++++|++++|+|
T Consensus 140 ----~~gd~Vlv~~p~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~l~~p~n 212 (447)
T 3b46_A 140 ----NAGDEVIVFEPFFDQYIPNIELC---GGKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAITSKTKAVIINTPHN 212 (447)
T ss_dssp ----CTTCEEEEEESCCTTHHHHHHHT---TCEEEEEEEECCGGGGTSCBCSTTSEECHHHHHTTCCTTEEEEEEESSCT
T ss_pred ----CCCCEEEEeCCCchhHHHHHHHc---CCEEEEEeCCCccccccccccccCcccCHHHHHHhhccCCeEEEEeCCCC
Confidence 89999999999999987766554 99999998754 356999999999999999999999999
Q ss_pred ccccccC---hHHHHHHhhhcCCEEEEecccccCcc---cccCC-----CCCccEEEEccccccCCCc--eEEEEE-ecC
Q psy15216 1544 EIGVIQP---ILEIGELCRSKGVIFHCDAAQAVGKI---DINIQ-----NYKVDLMSFSAHKIYGPKG--IGALYI-RRN 1609 (2602)
Q Consensus 1544 ~tG~~~~---l~~I~~ia~~~gi~vivD~a~~~g~~---~~~l~-----~~~~D~~v~S~~K~~gp~G--~G~l~~-~~~ 1609 (2602)
|||.++| +++|+++|++||+++|+|++|+.... ...+. ..+.++++.|+||.+|++| +||+++ +++
T Consensus 213 ptG~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~riG~~~~~~~~ 292 (447)
T 3b46_A 213 PIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTDSFTRIATLSPEIGQLTLTVGSAGKSFAATGWRIGWVLSLNAE 292 (447)
T ss_dssp TTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCHHHHTTEEEEEEHHHHTTCTTSCCEEEECSCHH
T ss_pred CCCcccCHHHHHHHHHHHHHcCcEEEEeccchhcccCCCCcCHHHcCCCCCCcEEEEecCchhcCCcchhhEEEEeCCHH
Confidence 9999986 88999999999999999999975321 11221 2357899999999888888 899999 776
Q ss_pred CCCccccccccCCccccCCCCCcchhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCC
Q psy15216 1610 PRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLA--RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIP 1687 (2602)
Q Consensus 1610 ~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~--~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~ 1687 (2602)
+++.+..... ....+.+.+.+.++.++|+.. ...+++.+++++++++++.+.|.+ . ++.+..+...
T Consensus 293 l~~~l~~~~~-------~~~~~~~~~~~~a~~~aL~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~g--- 360 (447)
T 3b46_A 293 LLSYAAKAHT-------RICFASPSPLQEACANSINDALKIGYFEKMRQEYINKFKIFTSIFDE-L-GLPYTAPEGT--- 360 (447)
T ss_dssp HHHHHHHHHH-------HHTSSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH-H-TCCEECCSBS---
T ss_pred HHHHHHHHHh-------hccCCCChHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHH-C-CCeecCCCee---
Confidence 6655543211 112345666677777888754 445788889999999999999987 3 6655533221
Q ss_pred ceEEEEEecC----------------CcHHHHHhc---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCC
Q psy15216 1688 HNLNISFNFI----------------EGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGR 1748 (2602)
Q Consensus 1688 ~~~~~~~~~~----------------~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~ 1748 (2602)
....+.++.. +..++...| +||.+.+|..|.... ......+++||+++.
T Consensus 361 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~------------~~~~~~~~iRls~~~ 428 (447)
T 3b46_A 361 YFVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYIKE------------HEKAAENLLRFAVCK 428 (447)
T ss_dssp SEEEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGSCGG------------GGGGGTTEEEEECCS
T ss_pred EEEEEecccccCccccccccccccCCCHHHHHHHHHHhCCEEEECchHhCCCC------------ccCCCCCEEEEEEeC
Confidence 2223333321 233565544 699999998775420 000113799999984
Q ss_pred CCCHHHHHHHHHHHHH
Q psy15216 1749 FTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1749 ~~t~edid~li~~L~~ 1764 (2602)
+.+++++++++|++
T Consensus 429 --~~e~l~~~~~~l~~ 442 (447)
T 3b46_A 429 --DDAYLENAVERLKL 442 (447)
T ss_dssp --CHHHHHHHHHHGGG
T ss_pred --CHHHHHHHHHHHHH
Confidence 89999999999986
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.7e-22 Score=266.83 Aligned_cols=289 Identities=17% Similarity=0.179 Sum_probs=215.5
Q ss_pred HHHHHHHHHHHhC--------CCCCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEE
Q psy15216 43 IEKARNEVAQLIY--------ADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVT 114 (2602)
Q Consensus 43 ~~~~r~~lA~~~g--------~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~ 114 (2602)
..++|+.++++++ +++++|++++|+++++.+++.++. ++||+|+++.+.|+++...+. ...|++++
T Consensus 85 ~~~lr~~la~~~~~~~g~~~~~~~~~i~~~~G~~~ai~~~~~~~~----~~gd~Vl~~~p~y~~~~~~~~--~~~g~~~~ 158 (428)
T 1iay_A 85 LPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLA----DPGDAFLVPSPYYPAFNRDLR--WRTGVQLI 158 (428)
T ss_dssp CHHHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHHC----CTTCEEEEESSCCTTHHHHTT--TTTCCEEE
T ss_pred cHHHHHHHHHHHHHhcCCCCCCChhhEEEccChHHHHHHHHHHhC----CCCCeEEEccCCCcchHHHHH--HhcCCEEE
Confidence 3567777777776 678899999999999999999987 799999999999999765332 23599999
Q ss_pred EeccCC--CCccChHHHHhhcc------CCceEEEEecccCccccccc---HHHHHHHHHhcCCEEEEecccccccc---
Q psy15216 115 YLKPKN--NGLITLSQLEEKIC------SDTILVSVMLVNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQAVGKI--- 180 (2602)
Q Consensus 115 ~v~~~~--~~~ld~e~l~~~i~------~~tklv~i~~~~npTG~~~~---l~~I~~la~~~g~~livD~a~a~g~~--- 180 (2602)
.++.++ ++.+|+++++++++ +++++|++++|+||||.++| +++|.++|++||+++|+|++|+....
T Consensus 159 ~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~ 238 (428)
T 1iay_A 159 PIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTP 238 (428)
T ss_dssp EECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSS
T ss_pred EeecCCccCCcCCHHHHHHHHHHHHhcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEeccccccccCCC
Confidence 998864 45789999999886 37899999999999999999 88999999999999999999975321
Q ss_pred -ccc---CCC------CCcc--EEEeccccccCCCC--cEEEEE-ecCCCCcccceecCCCccccccccCcchhHHHHHH
Q psy15216 181 -DIN---IQN------YKVD--LMSFSAHKIYGPKG--IGALYI-RRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMG 245 (2602)
Q Consensus 181 -~~d---l~~------~~~D--~~~~S~~K~~Gp~G--~G~l~~-~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~ 245 (2602)
..+ +.. +++| +++.|+||.+|++| +|++++ ++++++.+.... ..++.+.++..++.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~d~viv~~s~sK~~g~~Glr~G~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~a~~ 309 (428)
T 1iay_A 239 QFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARKMS---------SFGLVSTQTQYFLA 309 (428)
T ss_dssp CCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGGGCEEEEEESCHHHHHHHHHHH---------TTSCCCHHHHHHHH
T ss_pred CccCHHHhccccccccCCCCcEEEEecchhhcCCCCceEEEEEeCCHHHHHHHHHHH---------hcccCCHHHHHHHH
Confidence 111 111 1256 88899999998888 599998 455555554321 12345666666666
Q ss_pred HHHHH---HHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEccc-------ChhHHHHHh--C-C
Q psy15216 246 EAFRL---ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI-------EGESLLMAI--K-D 312 (2602)
Q Consensus 246 ~al~~---~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~-------~~~~~~~~L--~-g 312 (2602)
++++. ...++++..+++.++++++.+.|.+ . ++.+..+.. ..++.+.++.. ...++.+.| + |
T Consensus 310 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g 384 (428)
T 1iay_A 310 AMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEV-V-GIKCLKNNA---GLFCWMDLRPLLRESTFDSEMSLWRVIINDVK 384 (428)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-T-TCCBCCCSS---SSEEEEECGGGCSSSSHHHHHHHHHHHHHTSC
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHh-c-CCcccCCCe---eEEEEEechhhcCCCchhHHHHHHHHHHHhCC
Confidence 66662 2346778888999999999999987 3 665543321 23444555432 223566665 4 9
Q ss_pred eEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 313 IAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 313 I~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
|.++++..|... ..+++||+++ .++++++++++++|++.
T Consensus 385 i~v~~~~~~~~~-----------------~~~~iRis~~-~~~~e~i~~~~~~l~~~ 423 (428)
T 1iay_A 385 LNVSPGSSFECQ-----------------EPGWFRVCFA-NMDDGTVDIALARIRRF 423 (428)
T ss_dssp EECEEGGGGTCS-----------------SSSEEEEECS-SSCHHHHHHHHHHHHHH
T ss_pred EEEeCchhhCCC-----------------CCCEEEEEEe-cCCHHHHHHHHHHHHHH
Confidence 999988766431 1378999998 57999999999999864
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=3.5e-22 Score=262.08 Aligned_cols=314 Identities=13% Similarity=0.076 Sum_probs=232.7
Q ss_pred CCCHHHHHHHHHHHhhcc-CCCCCccchhHHHHHHHHHHHHHHHHHHhC------CCCCcEEEeCCHHHHHHHHHHhhhh
Q psy15216 1404 PIDPRVVDKMIPYLRVQF-GNPASRNHIYGWTAEKAIEKARNEVAQLIY------ADPREIIWTSGATESNNLAIKGAAH 1476 (2602)
Q Consensus 1404 ~~~~~v~eal~~~l~~~~-~np~~~~~~~~~~~~~~~~~lr~~ia~~~g------~~~~~iv~t~gaT~al~~al~~l~~ 1476 (2602)
+.++.+.+++ +.+.... .++.. ....++|+.++++++ ++++++++|+|+|+|+..++.++.
T Consensus 56 ~~~~~v~~a~-~~l~~~~~~y~~~----------~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~t~a~~~~~~~~~- 123 (409)
T 2gb3_A 56 KTPEVFFERI-YENKPEVVYYSHS----------AGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVIA- 123 (409)
T ss_dssp CCCTHHHHHH-HHTCCSSCCCCCT----------TCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHH-HHHhcCCCCCCCC----------CCcHHHHHHHHHHHHHHhCCCCCHHHEEEeCCHHHHHHHHHHHhC-
Confidence 4567888998 7775421 12211 123567777777774 466889999999999999999986
Q ss_pred hhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCC--CCCcChhHHHhhccCCceEEEEeccccccccccC---h
Q psy15216 1477 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---I 1551 (2602)
Q Consensus 1477 ~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~---l 1551 (2602)
++||+|++++++|+++...+... |++++.++.++ ++.+ +++|++++++++++|++++|+||||.++| +
T Consensus 124 ---~~gd~Vl~~~~~~~~~~~~~~~~---g~~~~~v~~~~~~~~~~-~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l 196 (409)
T 2gb3_A 124 ---NPGDEILVLEPFYANYNAFAKIA---GVKLIPVTRRMEEGFAI-PQNLESFINERTKGIVLSNPCNPTGVVYGKDEM 196 (409)
T ss_dssp ---CTTCEEEEEESCCTHHHHHHHHH---TCEEEEEECCGGGTSCC-CTTGGGGCCTTEEEEEEESSCTTTCCCCCHHHH
T ss_pred ---CCCCEEEEcCCCchhHHHHHHHc---CCEEEEeccCCCCCCcc-HHHHHHhhCcCCeEEEECCCCCCCCCCcCHHHH
Confidence 79999999999999988777666 99999999875 3445 89999999999999999999999999986 8
Q ss_pred HHHHHHhhhcCCEEEEecccccCcc---ccc-CCC-CCccEEEEccccccCCCc--eEEEEEec-CCCCccccccccCCc
Q psy15216 1552 LEIGELCRSKGVIFHCDAAQAVGKI---DIN-IQN-YKVDLMSFSAHKIYGPKG--IGALYIRR-NPRTRIEAQIHGGGH 1623 (2602)
Q Consensus 1552 ~~I~~ia~~~gi~vivD~a~~~g~~---~~~-l~~-~~~D~~v~S~~K~~gp~G--~G~l~~~~-~~~~~l~~~~~g~~~ 1623 (2602)
++|.++|++||+++|+|++|+.+.. +.+ +.. .+.|++++|+||.+|++| +|++++++ ++++.+.+....+
T Consensus 197 ~~i~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~l~~~l~~~~~~~-- 274 (409)
T 2gb3_A 197 RYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSIESDKVVVIDSVSKKFSACGARVGCLITRNEELISHAMKLAQGR-- 274 (409)
T ss_dssp HHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCCTTEEEEEESTTTTTCGGGCCEEEECSCHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHcCCEEEEECcccccccCCCCCCccccCCCCEEEEecchhccCCccceEEEEEECcHHHHHHHHHHHhcc--
Confidence 8999999999999999999976532 122 222 256899999999888888 89999988 7666655433111
Q ss_pred cccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEE-eCCCCCCCCceEEEEEecCCcHHH
Q psy15216 1624 EYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYI-NGDMNNRIPHNLNISFNFIEGESL 1702 (2602)
Q Consensus 1624 ~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i-~~~~~~~~~~~~~~~~~~~~~~~~ 1702 (2602)
. +++...+.++.++|+....++++..+++.++++++.+.|.+ . ++.+ ..+.. .....+.++..+..++
T Consensus 275 -----~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~---~~~~~~~~~~~~~~~l 343 (409)
T 2gb3_A 275 -----L-APPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEE-H-GLKRFTKPSG---AFYITAELPVEDAEEF 343 (409)
T ss_dssp -----C-CCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHH-T-TCCCBCCCSB---SSEEEEECSSSCHHHH
T ss_pred -----C-CCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH-c-CceeeeCCCe---eEEEEEEeCCCCHHHH
Confidence 1 45666666666777533455778888899999999999987 4 6655 32211 2222333443455667
Q ss_pred HHhc--C------CEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1703 LMAI--K------DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1703 ~~~L--~------gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
...| + ||.+++|..|... .....+++||+++ ++.+++++++++|++.
T Consensus 344 ~~~l~~~~~~~~~gi~v~~g~~f~~~--------------~~~~~~~iRis~~--~~~e~i~~~~~~l~~~ 398 (409)
T 2gb3_A 344 ARWMLTDFNMDGETTMVAPLRGFYLT--------------PGLGKKEIRIACV--LEKDLLSRAIDVLMEG 398 (409)
T ss_dssp HHHHHHSCCBTTEEEECEEGGGGCSS--------------TTTTSSEEEEECC--SCHHHHHHHHHHHHHH
T ss_pred HHHHHhccccccCcEEEeCchHhCCC--------------CCCCCCEEEEEeC--CCHHHHHHHHHHHHHH
Confidence 6665 5 9999998876531 0012379999998 7999999999999973
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.8e-22 Score=265.16 Aligned_cols=314 Identities=14% Similarity=0.134 Sum_probs=230.7
Q ss_pred CCCHHHHHHHHHHHhhc--cCCCCCccchhHHHHHHHHHHHHHHHHHHh----CC--CC-CcEEEeCCHHHHHHHHHHhh
Q psy15216 1404 PIDPRVVDKMIPYLRVQ--FGNPASRNHIYGWTAEKAIEKARNEVAQLI----YA--DP-REIIWTSGATESNNLAIKGA 1474 (2602)
Q Consensus 1404 ~~~~~v~eal~~~l~~~--~~np~~~~~~~~~~~~~~~~~lr~~ia~~~----g~--~~-~~iv~t~gaT~al~~al~~l 1474 (2602)
+.++.+.+++.+.++.. ..++. .....++|+.+++++ |. ++ ++|++|+|+++|+.+++.++
T Consensus 50 ~~~~~v~~a~~~~~~~~~~~~y~~----------~~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~t~g~~~a~~~~~~~~ 119 (412)
T 2x5d_A 50 PTPPHIVEKLCTVAQREDTHGYST----------SRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGSKEGLAHLMLAT 119 (412)
T ss_dssp CCCHHHHHHHHHTC---------C----------TTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCC----------CCCcHHHHHHHHHHHHHHhCCCCCCCcCEEEcCChHHHHHHHHHHh
Confidence 45778888888876542 11111 112456778888877 75 56 69999999999999999998
Q ss_pred hhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCC-C-CcChhHHHhhccCCceEEEEeccccccccccC--
Q psy15216 1475 AHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN-G-LITLSQLEEKICSDTILVSVMLVNNEIGVIQP-- 1550 (2602)
Q Consensus 1475 ~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~-~-~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~-- 1550 (2602)
. ++||+|+++.++|+++...+... |++++.++.+++ + .+|+++|++++++++++|++++|+||||.++|
T Consensus 120 ~----~~gd~Vl~~~p~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~l~~p~nptG~~~~~~ 192 (412)
T 2x5d_A 120 L----DHGDTILVPNPSYPIHIYGAVIA---GAQVRSVPLVPGIDFFNELERAIRESIPKPRMMILGFPSNPTAQCVELD 192 (412)
T ss_dssp C----CTTCEEEEEESCCHHHHHHHHHH---TCEEEEEECSTTSCHHHHHHHHHHTEESCCSEEEEESSCTTTCCCCCHH
T ss_pred C----CCCCEEEEcCCCchhHHHHHHHc---CCEEEEeecCCccCCCCCHHHHHHhcccCceEEEECCCCCCCCCcCCHH
Confidence 6 89999999999999988777665 999999998764 3 37899999999999999999999999999998
Q ss_pred -hHHHHHHhhhcCCEEEEecccccCcc----cccCCC----CCccEEEEccccccCCCc--eEEEEEecCCCCccccccc
Q psy15216 1551 -ILEIGELCRSKGVIFHCDAAQAVGKI----DINIQN----YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIH 1619 (2602)
Q Consensus 1551 -l~~I~~ia~~~gi~vivD~a~~~g~~----~~~l~~----~~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~~ 1619 (2602)
+++|.++|++||+++|+|++|+.+.. +.++.. .+.++++.|+||.+|++| +||+++++++++.+.....
T Consensus 193 ~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~ 272 (412)
T 2x5d_A 193 FFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLSKSYNMAGWRIGFMVGNPELVSALARIKS 272 (412)
T ss_dssp HHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTGGGTEEEEEECC-CCSCTTSCCEEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhhccCccCcEEEEecCccccCCcccceEEEEcCHHHHHHHHHHHh
Confidence 67899999999999999999986432 122222 356899999999888777 7999998876665544321
Q ss_pred cCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEec-C-
Q psy15216 1620 GGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-I- 1697 (2602)
Q Consensus 1620 g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~-~- 1697 (2602)
...++.+...+.++.++|+....++++.++++.++++++.+.|.+ . ++.+..+.. .....+.++. .
T Consensus 273 -------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~---g~~~~~~~~~~~~ 340 (412)
T 2x5d_A 273 -------YHDYGTFTPLQVAAIAALEGDQQCVRDIARQYQQRRDVLVKGLRE-A-GWMVENPKA---SMYVWAKIPEPYA 340 (412)
T ss_dssp -------HHCCCCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHH-H-TCCCCCCSB---SSEEEEECCTTTG
T ss_pred -------hhccCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH-C-CCEecCCCe---eeEEEEEcCCccC
Confidence 112356666677676777643445788888999999999999987 3 554432211 1223344432 2
Q ss_pred --CcHHHHHhc---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1698 --EGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1698 --~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
+..++...| +||.+++|..|... ..+++||+++. +.++++++++.|++.
T Consensus 341 ~~~~~~~~~~l~~~~gi~v~~g~~f~~~-----------------~~~~iRis~~~--~~~~l~~~l~~l~~~ 394 (412)
T 2x5d_A 341 HLGSLEFAKKLLQDAKVSVSPGIGFGDY-----------------GDDHVRFALIE--NRDRLRQAVRGIKAM 394 (412)
T ss_dssp GGCHHHHHHHHHHHHCEECEEGGGGCGG-----------------GTTEEEEECCS--CHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCEEEeCchhhCCC-----------------CCCeEEEEecC--CHHHHHHHHHHHHHH
Confidence 455666665 49999999877421 13789999986 889999999999873
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=3.5e-22 Score=259.06 Aligned_cols=288 Identities=16% Similarity=0.140 Sum_probs=224.1
Q ss_pred HHHHHHHHHHHh-CCCCCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCC-
Q psy15216 43 IEKARNEVAQLI-YADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN- 120 (2602)
Q Consensus 43 ~~~~r~~lA~~~-g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~- 120 (2602)
..++|+.+++++ +++++++++++|+++|+.+++.++. ++||+|+++.+.|+++...+... |++++.+++++
T Consensus 65 ~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~l~----~~gd~Vl~~~~~~~~~~~~~~~~---g~~~~~v~~~~~ 137 (375)
T 3op7_A 65 SPAFKKSVSQLYTGVKPEQILQTNGATGANLLVLYSLI----EPGDHVISLYPTYQQLYDIPKSL---GAEVDLWQIEEE 137 (375)
T ss_dssp CHHHHHHHHTTSSSCCGGGEEEESHHHHHHHHHHHHHC----CTTCEEEEEESSCTHHHHHHHHT---TCEEEEEEEEGG
T ss_pred hHHHHHHHHHHhccCChhhEEEcCChHHHHHHHHHHhc----CCCCEEEEeCCCchhHHHHHHHc---CCEEEEEecccc
Confidence 467899999998 5788899999999999999999987 89999999999999987665544 99999998864
Q ss_pred -CCccChHHHHhhccCCceEEEEecccCccccccc---HHHHHHHHHhcCCEEEEeccccccccc-c-c-CCCCCccEEE
Q psy15216 121 -NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQAVGKID-I-N-IQNYKVDLMS 193 (2602)
Q Consensus 121 -~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~---l~~I~~la~~~g~~livD~a~a~g~~~-~-d-l~~~~~D~~~ 193 (2602)
++.+|+++|++++++++++|++++|+||||.++| +++|.++|++||+++|+|++|+..... + . ....+.++++
T Consensus 138 ~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~ 217 (375)
T 3op7_A 138 NGWLPDLEKLRQLIRPTTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSDEVYRSFSELDVPSIIEVYDKGIAV 217 (375)
T ss_dssp GTTEECHHHHHHHCCTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECCSCCCSSSCCCCHHHHCTTEEEE
T ss_pred CCCCCCHHHHHHhhccCCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccccccccCCCchhhhcCCEEEE
Confidence 4568999999999999999999999999999999 999999999999999999998764321 1 0 1123456889
Q ss_pred eccccccCCCC--cEEEEEecCCCCcccceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy15216 194 FSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYN 271 (2602)
Q Consensus 194 ~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~ 271 (2602)
.|+||.+|++| +||+++++++++.+..... ....+++....+++..+++....++++.+++..++++++.+
T Consensus 218 ~s~sK~~~~~G~r~G~v~~~~~l~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 290 (375)
T 3op7_A 218 NSLSKTYSLPGIRIGWVAANHQVTDILRDYRD-------YTMICAGVFDDLVAQLALAHYQEILERNRHILEENLAILDQ 290 (375)
T ss_dssp EESSSSSSCGGGCCEEEECCHHHHHHHTTTGG-------GTTSCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEChhhcCCcccceEEEEeCHHHHHHHHHHHh-------hhccCCCcHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 99999888777 6999998877766654331 11234455666666677775555677888888999999999
Q ss_pred HHhhccCceEEeCCCCCCCCceEEEEEcc-cChhHHHHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEE
Q psy15216 272 GLMESIEEIYINGDMNNRIPHNLNISFNF-IEGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIR 347 (2602)
Q Consensus 272 ~L~~~~~g~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iR 347 (2602)
.|.+ .+++.+..+... ...++.++. .+..++...+ +||.+++|..|.. .+++|
T Consensus 291 ~l~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~-------------------~~~iR 347 (375)
T 3op7_A 291 WIEE-EPLVSYIRPAVV---STSFVKIAVDMPMEDFCLQLLQEHGVLLVPGNRFER-------------------DGYVR 347 (375)
T ss_dssp HHHH-CTTEEECCCSSS---SCEEEEECCSSCHHHHHHHHHHHHCEECEEGGGGTC-------------------TTEEE
T ss_pred HHhh-CCCceEecCCCe---EEEeEEcCCCCCHHHHHHHHHHhCCEEEeChhhhCC-------------------CCeEE
Confidence 9987 678887654332 234455543 3556666655 5999998877643 27899
Q ss_pred EecCCCCCHHHHHHHHHHHHhh
Q psy15216 348 FTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 348 is~~~~~t~edid~li~~L~~~ 369 (2602)
++++. +.+++++++++|++.
T Consensus 348 i~~~~--~~~~i~~~l~~l~~~ 367 (375)
T 3op7_A 348 LGFAC--EQETLIKGLEKLSQF 367 (375)
T ss_dssp ECCCS--CHHHHHHHHHHHHHH
T ss_pred EEecC--CHHHHHHHHHHHHHH
Confidence 99885 458999999999864
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.89 E-value=5.8e-23 Score=269.70 Aligned_cols=320 Identities=14% Similarity=0.108 Sum_probs=236.5
Q ss_pred CCCCHHHHHHHHHHHhhc--cCCCCCccchhHHHHHHHHHHHHHHHHHHhCCC--C-CcEEEeCCHHHHHHHHHHhhhhh
Q psy15216 1403 TPIDPRVVDKMIPYLRVQ--FGNPASRNHIYGWTAEKAIEKARNEVAQLIYAD--P-REIIWTSGATESNNLAIKGAAHF 1477 (2602)
Q Consensus 1403 ~~~~~~v~eal~~~l~~~--~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~--~-~~iv~t~gaT~al~~al~~l~~~ 1477 (2602)
.+.++.+++++.+.++.. .+++.. ....++.+++++++++++|.+ + ++|++|+|+++|++.++.++.
T Consensus 52 ~~~~~~v~~a~~~~~~~~~~~~y~~~------~g~~~l~~~l~~~l~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~l~-- 123 (407)
T 3nra_A 52 HEPTPGAFDLFSAGVQSGGVQAYTEY------RGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATV-- 123 (407)
T ss_dssp SCCCTTHHHHHHHHHHHTHHHHSCCT------TCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHTTC--
T ss_pred CCCcHHHHHHHHHHHhcCCCCCcCCC------CCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHHHHHhC--
Confidence 367888999999988752 122211 112356778888899989873 3 689999999999999999886
Q ss_pred hccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEecc------CCCCCcChhHHHhhccCCceEEEEeccccccccccC-
Q psy15216 1478 YKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP------KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP- 1550 (2602)
Q Consensus 1478 ~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~------~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~- 1550 (2602)
++||+|+++.++|+++...++.. |++++.++. +.++.+|+++|++++++++++|++++|+||||.++|
T Consensus 124 --~~gd~vl~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~ 198 (407)
T 3nra_A 124 --ARGDKVAIVQPDYFANRKLVEFF---EGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSA 198 (407)
T ss_dssp --CTTCEEEEEESCCTHHHHHHHHT---TCEEEEEEBCCCSSCCSSCCBCHHHHHHHHHTTCCEEEEESSCTTTCCCCCH
T ss_pred --CCCCEEEEcCCcccchHHHHHHc---CCEEEEeecccccccCcCCCcCHHHHHHHHhhCCcEEEEcCCCCCCCcccCH
Confidence 89999999999999987666555 999999998 356779999999999999999999999999999999
Q ss_pred --hHHHHHHhhhcCCEEEEecccccCc----ccccC-----CCCCccEEEEccccccCCCc--eEEEEEecCCCCccccc
Q psy15216 1551 --ILEIGELCRSKGVIFHCDAAQAVGK----IDINI-----QNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQ 1617 (2602)
Q Consensus 1551 --l~~I~~ia~~~gi~vivD~a~~~g~----~~~~l-----~~~~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~ 1617 (2602)
+++|+++|++||+++|+|++|+.+. ....+ ...+.++++.|+||.+|++| +||++.++++++.+...
T Consensus 199 ~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~ 278 (407)
T 3nra_A 199 EEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGSRAIIARMEKL 278 (407)
T ss_dssp HHHHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCCGGGCTTSCGGGEEEEECSSSTTCCGGGCCEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCEEEEEccccccccCCCCCCChhhcCcccCCcEEEEeCcccccCCCeeeEEEEEcCHHHHHHHHHH
Confidence 9999999999999999999997632 11122 12446689999999888666 79999987766655443
Q ss_pred cccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEec-
Q psy15216 1618 IHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF- 1696 (2602)
Q Consensus 1618 ~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~- 1696 (2602)
... + ..+++...+.++..+++.....+++..++.+++++++.+.|.+ .+++.+..+... ....+.++.
T Consensus 279 ~~~------~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~---~~~~~~~~~~ 347 (407)
T 3nra_A 279 QAI------V-SLRAAGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVLRG-CEGVFARTPQAG---SYLFPRLPKL 347 (407)
T ss_dssp HHH------H-TSSSCHHHHGGGGGTTCCCTTHHHHHHHHHHHHHHHHHHHHHT-STTCBCCCCSBS---SEECCBCCCB
T ss_pred Hhh------h-ccCCChHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhc-CCCceeccCCee---EEEEEeCCCC
Confidence 211 1 1233444444444444422234677788889999999999987 677766533221 222223332
Q ss_pred -CCcHHHHHhc---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1697 -IEGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1697 -~~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
.+..++...| +||.+++|..|.+. ..+++|++++. +.+++++++++|++.
T Consensus 348 ~~~~~~~~~~l~~~~gi~v~~g~~~~~~-----------------~~~~iRis~~~--~~~~i~~~~~~l~~~ 401 (407)
T 3nra_A 348 AVAPAEFVKILRLQAGVVVTPGTEFSPH-----------------TADSVRLNFSQ--DHEAAVAAARRIVTL 401 (407)
T ss_dssp SSCHHHHHHHHHHHHCEECEEGGGTCTT-----------------CTTBEEEECCS--CHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCEEEeCchhhCCC-----------------CCCEEEEEeCC--CHHHHHHHHHHHHHH
Confidence 3455666665 49999999887642 13789999984 899999999999873
|
| >1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=4.6e-22 Score=259.22 Aligned_cols=330 Identities=12% Similarity=0.076 Sum_probs=226.5
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCEEE
Q psy15216 11 PRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHII 90 (2602)
Q Consensus 11 ~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vl 90 (2602)
+.+++++.+.+... +. ++......+++|+.+++++|.+ +.|++++ +|+|+++++.++. +++||+|+
T Consensus 17 ~~~~~a~~~~l~~~--~~-------~~~~~~~~~~l~~~la~~~~~~-~~i~~~s-Gt~al~~~l~~l~---~~~gd~Vi 82 (388)
T 1b9h_A 17 DAERNGLVRALEQG--QW-------WRMGGDEVNSFEREFAAHHGAA-HALAVTN-GTHALELALQVMG---VGPGTEVI 82 (388)
T ss_dssp HHHHHHHHHHHHTS--CC-------BTTTCSHHHHHHHHHHHHTTCS-EEEEESC-HHHHHHHHHHHTT---CCTTCEEE
T ss_pred HHHHHHHHHHHHcC--Ce-------eecCCHHHHHHHHHHHHHhCCC-eEEEeCC-HHHHHHHHHHHcC---CCCcCEEE
Confidence 88999999988752 10 0111235788999999999986 4555555 5999999999983 27999999
Q ss_pred EcCCCCcccHHHHHHHHhCCcEEEEeccCCC-CccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHhcCCEE
Q psy15216 91 TVQTEHKSVLDSIRKLENDGFRVTYLKPKNN-GLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIF 169 (2602)
Q Consensus 91 v~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~-~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~~g~~l 169 (2602)
++.++|+++...+... |++++.++++++ +.+|+++|+++++++|++|+ |+||||.+.|+++|.++|++||+++
T Consensus 83 ~~~~~~~~~~~~~~~~---g~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~v~---~~n~tG~~~~l~~i~~la~~~~~~l 156 (388)
T 1b9h_A 83 VPAFTFISSSQAAQRL---GAVTVPVDVDAATYNLDPEAVAAAVTPRTKVIM---PVHMAGLMADMDALAKISADTGVPL 156 (388)
T ss_dssp EESSSCTHHHHHHHHT---TCEEEEECBCTTTCCBCHHHHHHHCCTTEEEEC---CBCGGGCCCCHHHHHHHHHHHTCCB
T ss_pred ECCCccHHHHHHHHHc---CCEEEEEecCCCcCCCCHHHHHHhcCcCceEEE---EeCCccCcCCHHHHHHHHHHcCCEE
Confidence 9999999998766544 999999999864 78999999999998998887 8899999999999999999999999
Q ss_pred EEeccccccccc--ccCCCCCccEEEec--cccccCCCCcEEEEEecC-C--CCcccceecCCCc---cccc---cccC-
Q psy15216 170 HCDAAQAVGKID--INIQNYKVDLMSFS--AHKIYGPKGIGALYIRRN-P--RTRIEAQIHGGGH---EYGL---RSGT- 235 (2602)
Q Consensus 170 ivD~a~a~g~~~--~dl~~~~~D~~~~S--~~K~~Gp~G~G~l~~~~~-~--~~~l~~~~~g~~~---~~~~---~~gt- 235 (2602)
|+|++|+.|..+ .++..++ |+.++| .||.+++..+|+++.+++ + ++.+.... +++. .+.+ ..|+
T Consensus 157 i~D~a~~~g~~~~~~~~~~~~-~i~~~S~s~~K~l~g~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~ 234 (388)
T 1b9h_A 157 LQDAAHAHGARWQGKRVGELD-SIATFSFQNGKLMTAGEGGAVVFPDGETEKYETAFLRH-SCGRPRDDRRYFHKIAGSN 234 (388)
T ss_dssp CEECTTCTTCEETTEEGGGSS-SCEEEECCTTSSSCSSSCEEEEECTTCHHHHHHHHHHT-BTTCCTTCSSCCCCSCCCB
T ss_pred EEecchhcCCccCCeeccccc-ceEEEEccCCCcccCCCeEEEEECCHHHHHHHHHHHHH-hCCCCccCccceeeccccc
Confidence 999999987644 3333344 455555 457553333699998875 3 33333221 1111 1111 1233
Q ss_pred --cchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCC---CCCCceEEEEEccc---ChhHHH
Q psy15216 236 --LATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMN---NRIPHNLNISFNFI---EGESLL 307 (2602)
Q Consensus 236 --~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~---~~~~~~~~~~~~~~---~~~~~~ 307 (2602)
++..+.+++..+ ...+++..++++++++++.+.|.+ ++++.+..+.. ...+.++.+.++.. +..++.
T Consensus 235 ~~~~~~~~a~~~~~----~~~l~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 309 (388)
T 1b9h_A 235 MRLNEFSASVLRAQ----LARLDEQIAVRDERWTLLSRLLGA-IDGVVPQGGDVRADRNSHYMAMFRIPGLTEERRNALV 309 (388)
T ss_dssp CBCBHHHHHHHHHH----HTTHHHHHHHHHHHHHHHHHHHHT-STTCEECCCCTTCCBCCCSEEEEECTTCCHHHHHHHH
T ss_pred CCcCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhcc-CCCccccCCCcCCCccceEEEEEEeCCcCcccHHHHH
Confidence 333333332222 234566778888899999999987 68888875322 12234556666643 455677
Q ss_pred HHh--CCeEEcccccCCCCCCChHHHH------------HHcCCCccCCCCeEEEecCCCC-CHHHHHHHHHHHHhh
Q psy15216 308 MAI--KDIAVSSGSACTSASLEPSYVL------------RALGCNDELAHSSIRFTIGRFT-TEKEIDFTIKLLKMK 369 (2602)
Q Consensus 308 ~~L--~gI~v~~g~~~~~~~~~~~~~~------------~~~g~~~~~~~~~iRis~~~~~-t~edid~li~~L~~~ 369 (2602)
..| +||.++++.. +.+..+.+.. ..++..+....+.||++++.++ |++||++++++|++.
T Consensus 310 ~~L~~~gI~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~t~edi~~~~~~l~~~ 384 (388)
T 1b9h_A 310 DRLVEAGLPAFAAFR--AIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPELHATAEIIADA 384 (388)
T ss_dssp HHHHHTTCCEEECCC--CGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCcccccC--ccccChHhHhcCCCcccccccccCCHHHHHHHhCeEEecCCCCCCCHHHHHHHHHHHHHH
Confidence 776 7999987643 2222222210 0122222223467999999999 999999999999863
|
| >2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-21 Score=262.54 Aligned_cols=342 Identities=16% Similarity=0.172 Sum_probs=235.1
Q ss_pred eeeccC-CCCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCC-CcEEEeCCHHHHHHHHHH
Q psy15216 1395 NIVFKD-ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADP-REIIWTSGATESNNLAIK 1472 (2602)
Q Consensus 1395 ~v~L~~-~~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~-~~iv~t~gaT~al~~al~ 1472 (2602)
..|++. .+.+.++.+++++..... |+....+..+.....+..++++++++++|+++ ++++||+|+|+|+..++.
T Consensus 101 ~~yl~~~~~~~~~~~v~~~~~~~~~----n~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~t~ggt~a~~~al~ 176 (497)
T 2qma_A 101 PDCIAHLHTPPLMPAVAAEAMIAAL----NQSMDSWDQASSATYVEQKVVNWLCDKYDLSEKADGIFTSGGTQSNQMGLM 176 (497)
T ss_dssp TTBCSSSCCCCBHHHHHHHHHHHHH----CCCTTCGGGCHHHHHHHHHHHHHHHHHTTCCTTCEEEEESSHHHHHHHHHH
T ss_pred CCeeEeCCCCCcHHHHHHHHHHHhh----cccccchhhChHHHHHHHHHHHHHHHHhCCCCCCCeEEcCCchHHHHHHHH
Confidence 356654 334667777777766543 22222344455667778888999999999965 789999999999999998
Q ss_pred hhhhhhc---------cC------CC-EEEEcCCCCcchHHHHHHHHhCCc-EEEEeccCCCCCcChhHHHhhccCC---
Q psy15216 1473 GAAHFYK---------KR------GK-HIITVQTEHKSVLDSIRKLENDGF-RVTYLKPKNNGLITLSQLEEKICSD--- 1532 (2602)
Q Consensus 1473 ~l~~~~~---------~~------gd-~Vlv~~~~~~s~~~~~~~~~~~G~-~v~~v~~~~~~~id~d~l~~~i~~~--- 1532 (2602)
++..... .+ |+ +|+++.++|+++..++..+.. |. +++.++.++++.+|+++|+++|+++
T Consensus 177 ~ar~~~~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h~s~~~~~~~~g~-g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~ 255 (497)
T 2qma_A 177 LARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKSASWMGL-GEKAVMTVDANADGTMDITKLDEVIAQAKAE 255 (497)
T ss_dssp HHHHHHHHHHHCCCHHHHCSCGGGGGEEEEEETTSCTHHHHHHHHTTS-CGGGEEEECBCTTSSBCGGGHHHHHHHHHHT
T ss_pred HHHHHHHHhhcccchhhcccccccCCeEEEECCCchHHHHHHHHHcCC-CcccEEEEecCCCCcCCHHHHHHHHHHHHHC
Confidence 8532111 12 46 899999999999888776621 33 7999999888999999999999754
Q ss_pred -ce--EEEEeccccccccccChHHHHHHhhhcCCEEEEecccccCccccc----CCCC-CccEEEEcccc-ccCCCceEE
Q psy15216 1533 -TI--LVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDIN----IQNY-KVDLMSFSAHK-IYGPKGIGA 1603 (2602)
Q Consensus 1533 -t~--lv~l~~~~n~tG~~~~l~~I~~ia~~~gi~vivD~a~~~g~~~~~----l~~~-~~D~~v~S~~K-~~gp~G~G~ 1603 (2602)
++ +|++++++|+||.+.|+++|.++|++||+|+|+|++|+.+..+.+ +..+ ++|++++|+|| +++|.|+|+
T Consensus 256 ~~~~~~vv~~~~~~~tG~~~~l~~I~~l~~~~~~~l~vD~a~~~~~~~~~~~~~~~gi~~~D~i~~s~hK~l~~p~~~G~ 335 (497)
T 2qma_A 256 GLIPFAIVGTAGTTDHGAIDDLDFIADMAVKHDMWMHVDGAYGGALILSSHKSRLKGVERAHSISVDFHKLFYQTISCGA 335 (497)
T ss_dssp TCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGSTTGGGGTTGGGCSEEEEETTTTTCCCSSCEE
T ss_pred CCcceEEEEcCCCCCCCCCCCHHHHHHHHHHcCCEEEEehhhhHHHHhCcchHhhcCcccCCEEEEcchhccCCCcceEE
Confidence 44 899999999999999999999999999999999999988776554 3333 67999999999 667888999
Q ss_pred EEEecCC-CCcccc--ccc-cCCcc-ccCC----CCCcchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy15216 1604 LYIRRNP-RTRIEA--QIH-GGGHE-YGLR----SGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESI 1673 (2602)
Q Consensus 1604 l~~~~~~-~~~l~~--~~~-g~~~~-~~~~----~gt~~~~~~~al~~aL~-~~~~~~~~~~~~~~~l~~~l~~~L~~~~ 1673 (2602)
++++++. ++.+.. .+. +.... .... .++..+. ..++..+++ +...+++++.++..++++++.+.|.+ .
T Consensus 336 l~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~r~~~-al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~-~ 413 (497)
T 2qma_A 336 LLVNDKSNFKFLLHHADYLNREHDELPNLVDKSIATTKRFD-ALKVFMTMQNVGPKALGDMYDHLLAQTLEVADMIRT-N 413 (497)
T ss_dssp EEESCGGGGGGGCC--------------------CCSCCCT-HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHT-C
T ss_pred EEEeCHHHHHHhcCCchhcCCccccCCCccccCCCCCCchh-HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhh-C
Confidence 9998653 222211 010 00000 0000 0111111 223445555 33456888999999999999999987 7
Q ss_pred CcEEEeCCCCCCCCceEEEEEecCC--c----HHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEe
Q psy15216 1674 EEIYINGDMNNRIPHNLNISFNFIE--G----ESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFT 1745 (2602)
Q Consensus 1674 ~gl~i~~~~~~~~~~~~~~~~~~~~--~----~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls 1745 (2602)
+++.+..++. ..+..|.+.... . ..+...+ +|+.+.++..+. ..+++|++
T Consensus 414 ~~~~~~~~~~---~~~v~f~~~~~~~~~~~l~~~l~~~l~~~G~~~~~~~~~~-------------------g~~~lRis 471 (497)
T 2qma_A 414 DQFELLAEPS---LSTVLFRATHETADLDELNKALRLEALTRGIAVLGETIVD-------------------GKTALKFT 471 (497)
T ss_dssp TTEEECSCCS---SSEEEEEECCSSSCHHHHHHHHHHHHHHHTSCBCEEEEET-------------------TEEEEEEE
T ss_pred CCeEEEcCCC---ceEEEEEEcCCccCHHHHHHHHHHHHHhCCCEEEEeeEEC-------------------CEEEEEEE
Confidence 8998875432 234445543321 1 1233333 354443222111 12689999
Q ss_pred c-CCCCCHHHHHHHHHHHHHh
Q psy15216 1746 I-GRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1746 ~-~~~~t~edid~li~~L~~~ 1765 (2602)
+ ++++|.+|++++++.|++.
T Consensus 472 ~~~~~~t~edi~~~~~~l~~~ 492 (497)
T 2qma_A 472 ILNPCLTTSDFESLLSKINML 492 (497)
T ss_dssp CCCTTCCHHHHHHHHHHHHHH
T ss_pred ecCCCCCHHHHHHHHHHHHHH
Confidence 8 8899999999999999873
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.89 E-value=3.5e-22 Score=259.24 Aligned_cols=312 Identities=12% Similarity=-0.022 Sum_probs=229.2
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCC--CCCcEEEeCCHHHHHHHHHHhcccccccC
Q psy15216 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA--DPREIIWTSGATESNNLAIKGAAHFYKKR 85 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~--~~~~Iv~t~g~T~al~~~~~~l~~~~~~~ 85 (2602)
++|+.+.+++.+.+.....++... ...++.+.+.+++++.+|+ ++++|++|+|+++|+++++.++. ++
T Consensus 36 ~~~~~v~~a~~~~~~~~~~y~~~~------g~~~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~al~~~~~~~~----~~ 105 (376)
T 3ezs_A 36 ETPKFIQDALKNHTHSLNIYPKSA------FEESLRAAQRGFFKRRFKIELKENELISTLGSREVLFNFPSFVL----FD 105 (376)
T ss_dssp CCCHHHHHHHHTTGGGGGSCCCTT------CCHHHHHHHHHHHHHHHSCCCCGGGEEEESSSHHHHHHHHHHHT----TT
T ss_pred CCCHHHHHHHHHhhhhcCCCCCCC------CCHHHHHHHHHHHHHHhCCCCCHHHEEECcCcHHHHHHHHHHHc----CC
Confidence 567899999988775444444321 1123445555555555587 77899999999999999999987 78
Q ss_pred --CCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccCCceEEEEecccCccccccc---HHHHHH
Q psy15216 86 --GKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIGE 160 (2602)
Q Consensus 86 --gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~---l~~I~~ 160 (2602)
||+|+++.+.|+++...+... |++++.++.++++.+++ +++++++++++++++++|+||||.++| +++|++
T Consensus 106 ~~gd~vl~~~p~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~-~l~~~~~~~~~~v~~~~p~nptG~~~~~~~l~~i~~ 181 (376)
T 3ezs_A 106 YQNPTIAYPNPFYQIYEGAAKFI---KAKSLLMPLTKENDFTP-SLNEKELQEVDLVILNSPNNPTGRTLSLEELISWVK 181 (376)
T ss_dssp CSSCEEEEEESCCTHHHHHHHHT---TCEEEEEECCGGGTSCC-CCCHHHHHHCSEEEECSSCTTTCCCCCHHHHHHHHH
T ss_pred CCCCEEEEecCCcHhHHHHHHHc---CCEEEEcccCCCCCcch-hHHhhhccCCCEEEEcCCCCCcCCCCCHHHHHHHHH
Confidence 999999999999987766554 99999999887655666 777778788999999999999999998 556777
Q ss_pred HHHhcCCEEEEecccccccc---cccCC---------CCCccEEEeccccccCCCC--cEEEEEecCCCCcccceecCCC
Q psy15216 161 LCRSKGVIFHCDAAQAVGKI---DINIQ---------NYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGG 226 (2602)
Q Consensus 161 la~~~g~~livD~a~a~g~~---~~dl~---------~~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g~~ 226 (2602)
+|++||+++|+|++|+.... +..+. ..+.++++.|+||.+|++| +||++.++++++.+.+...
T Consensus 182 ~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~--- 258 (376)
T 3ezs_A 182 LALKHDFILINDECYSEIYENTPPPSLLEACMLAGNEAFKNVLVIHSLSKRSSAPGLRSGFIAGDSRLLEKYKAFRA--- 258 (376)
T ss_dssp HHHHHTCEEEEECTTTTCBSSSCCCCHHHHHHHTTCTTCTTEEEEEESTTTTTCGGGCCEEEEECHHHHHHHHHHHT---
T ss_pred HHHHcCcEEEEEccchhhccCCCCCCHHHccccccccccCcEEEEecchhccCCccceeEEEeeCHHHHHHHHHHHh---
Confidence 79999999999999975332 12111 3466799999999888777 7999998877766654321
Q ss_pred ccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcccChhHH
Q psy15216 227 HEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESL 306 (2602)
Q Consensus 227 ~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 306 (2602)
...++++.+...++.++++. ..++++..+++.++++++.+.|. ++. .+. ......+.++ +..++
T Consensus 259 ----~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~l~~~l~----~~~--~~~---~~~~~~~~~~--~~~~~ 322 (376)
T 3ezs_A 259 ----YLGYTSANAIQKASEAAWLD-DRHAEFFRNIYANNLKLARKIFK----NTL--IYP---YSFYVYLPVQ--NGENF 322 (376)
T ss_dssp ----TTCCCCCHHHHHHHHHHHHC-SHHHHHHHHHHHHHHHHHHHHST----TCC--CCS---BSSEEEEECS--CHHHH
T ss_pred ----hhcCCCChHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHhc----CCC--CCC---cceEEEEECC--CHHHH
Confidence 12346777777777777773 23467888888888888888885 332 111 1233334444 56666
Q ss_pred HHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 307 LMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 307 ~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
...| +||.+++|..|... ....+++||+++. +++++++++++|++.
T Consensus 323 ~~~l~~~~gi~v~~g~~~~~~---------------~~~~~~iRis~~~--~~~~i~~~l~~l~~~ 371 (376)
T 3ezs_A 323 AKTLYQNEGIITLPALYLGRN---------------RIGADYVRLALVY--DTPLLEKPLEIIETY 371 (376)
T ss_dssp HHHHHHHHCCBCEEGGGGCST---------------TTTTTEEEEECCS--CHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCEEEeCcHHhCCC---------------CCCCCeEEEEEcC--CHHHHHHHHHHHHHH
Confidence 6666 59999999887631 1124899999974 999999999999863
|
| >3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=8.9e-22 Score=256.53 Aligned_cols=330 Identities=13% Similarity=0.143 Sum_probs=233.0
Q ss_pred CCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhh---hc
Q psy15216 1403 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHF---YK 1479 (2602)
Q Consensus 1403 ~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~---~~ 1479 (2602)
...++++++++.+.+...+..+ .....++|+.+++++|.+ ++++++|+|+|++.++.++... .+
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~~-----------~~~~~~l~~~la~~~~~~--~~i~~~sGt~a~~~al~~~~~~~~~~~ 77 (390)
T 3b8x_A 11 STWDDLEYKAIQSVLDSKMFTM-----------GEYVKQYETQFAKTFGSK--YAVMVSSGSTANLLMIAALFFTKKPRL 77 (390)
T ss_dssp CCCCHHHHHHHHHHHHHTCCSS-----------CHHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHTTSSSSCSC
T ss_pred CCCCHHHHHHHHHHHHcCCCCC-----------ChHHHHHHHHHHHHHCCC--cEEEECCHHHHHHHHHHHHHhhhhcCC
Confidence 4567889999998887532111 135788999999999976 6888999999999999998100 03
Q ss_pred cCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCC-CCcChhHHHhhccCCceEEEEeccccccccccChHHHHHHh
Q psy15216 1480 KRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN-GLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELC 1558 (2602)
Q Consensus 1480 ~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~-~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~~ia 1558 (2602)
++||+|+++.++|+++...+... |+++++++++++ +.+|+++|+++++++|++|+++| ++|...|+++|.++|
T Consensus 78 ~~g~~Vi~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~---~~g~~~~~~~i~~l~ 151 (390)
T 3b8x_A 78 KKGDEIIVPAVSWSTTYYPLQQY---GLRVKFVDIDINTLNIDIESLKEAVTDSTKAILTVN---LLGNPNNFDEINKII 151 (390)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHT---TCEEEEECBCTTTCSBCHHHHHHHCCTTEEEEEEEC---GGGCCCCHHHHHHHH
T ss_pred CCcCEEEECCCCcHHHHHHHHHc---CCEEEEEecCccccCcCHHHHHHHhCcCCeEEEEEC---CccChhhHHHHHHHH
Confidence 78999999999999998877654 999999999875 88999999999999999999975 588889999999999
Q ss_pred hhcCCEEEEecccccCcccccCCCCCc--cEEEEcc---ccccCCCceEEEEEec-CCCCccccccccC--Cc-------
Q psy15216 1559 RSKGVIFHCDAAQAVGKIDINIQNYKV--DLMSFSA---HKIYGPKGIGALYIRR-NPRTRIEAQIHGG--GH------- 1623 (2602)
Q Consensus 1559 ~~~gi~vivD~a~~~g~~~~~l~~~~~--D~~v~S~---~K~~gp~G~G~l~~~~-~~~~~l~~~~~g~--~~------- 1623 (2602)
++||+++|+|++|+.|... +...++. |+.++|+ ||+.++.| |+++.++ ++.+.+.+...++ ..
T Consensus 152 ~~~~~~li~D~a~~~g~~~-~~~~~g~~~~~~~~s~~~~k~~~~g~g-G~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~ 229 (390)
T 3b8x_A 152 GGRDIILLEDNCESMGATF-NNKCAGTFGLMGTFSSFYSNHIATMEG-GCIVTDDEEIYHILLCIRAHGWTRNLPKKNKV 229 (390)
T ss_dssp TTSCCEEEEECTTCTTCEE-TTEETTSSSSEEEEECCTTSSSCSSSC-EEEEESCHHHHHHHHHHTBTTBSTTSCSEETT
T ss_pred HHcCCEEEEECcCcccCEE-CCcccccccceEEEEccCCCCCccCCc-eEEEeCCHHHHHHHHHHHhcCCCccccccccc
Confidence 9999999999999988765 4444443 6666553 44655666 9999886 4444444433222 00
Q ss_pred -----------c-----ccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCC
Q psy15216 1624 -----------E-----YGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIP 1687 (2602)
Q Consensus 1624 -----------~-----~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~ 1687 (2602)
. .++..++.++...+++. ++ ..+++..++.+++++++.+.|.+ ++++.+..++....+
T Consensus 230 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~-~l----~~l~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~ 303 (390)
T 3b8x_A 230 TGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIE-QL----KKLPRFISVRRKNAEYFLDKFKD-HPYLDVQQETGESSW 303 (390)
T ss_dssp TEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHH-HH----HHHHHHHHHHHHHHHHHHHHHTT-CSSEEECCCCSBCCC
T ss_pred cccccccccccccceeccccccCcCHHHHHHHHH-HH----HHHHHHHHHHHHHHHHHHHHhcC-CCCcccCCCCCCccc
Confidence 0 11222355555555443 23 34567888889999999999987 788888754322223
Q ss_pred ceEEEEEe---cCCcHHHHHhc--CCEEEcc---ccccCC-CCCChhHH------HHHcCCCccccCCeEEEecCCCCCH
Q psy15216 1688 HNLNISFN---FIEGESLLMAI--KDIAVSS---GSACTS-ASLEPSYV------LRALGCNDELAHSSIRFTIGRFTTE 1752 (2602)
Q Consensus 1688 ~~~~~~~~---~~~~~~~~~~L--~gI~v~~---g~~~~~-~~~~~~~~------~~~~~~~~~~~~~~iRls~~~~~t~ 1752 (2602)
....+.++ +.+.+++...| +||.+++ +..|.. + .+. ...++.++....+.||||+++++|.
T Consensus 304 ~~~~i~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~t~ 379 (390)
T 3b8x_A 304 FGFSFIIKKDSGVIRKQLVENLNSAGIECRPIVTGNFLKNTD----VLKYFDYTVHNNVDNAEYLDKNGLFVGNHQIELF 379 (390)
T ss_dssp CEEEEEECTTSCCCHHHHHHHHHHTTBCCBCSTTSSGGGCHH----HHTTCEEEESSCCHHHHHHHHHEEEEECCSSCCH
T ss_pred EEEEEEecCcCcccHHHHHHHHHHCCCCeeeecCCchhhcch----hhhcCCCCCcCCChHHHHHhcCEEEeeCCCCCCH
Confidence 33445555 34566777766 7998886 333332 2 110 0112222333346899999999999
Q ss_pred HHHHHHHHHHH
Q psy15216 1753 KEIDFTIKLLK 1763 (2602)
Q Consensus 1753 edid~li~~L~ 1763 (2602)
+||++++++|+
T Consensus 380 ~di~~i~~~l~ 390 (390)
T 3b8x_A 380 DEIDYLREVLK 390 (390)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHhhC
Confidence 99999998873
|
| >1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.5e-21 Score=260.01 Aligned_cols=333 Identities=14% Similarity=0.131 Sum_probs=235.4
Q ss_pred CCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCC
Q psy15216 1403 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRG 1482 (2602)
Q Consensus 1403 ~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~g 1482 (2602)
....+.+.+++.+.+. ..+|.. .+..+....+...++++++++++|++. .+++++|+|+|+..+++++.....++|
T Consensus 76 ~~~~p~v~~~~~~~~~--~~~~~~-~~~~~~g~~~l~~~l~~~la~~~g~~~-~~~~~~ggt~a~~~al~~~~~~~~~~G 151 (474)
T 1wyu_B 76 MKYNPKLHEEAARLFA--DLHPYQ-DPRTAQGALRLMWELGEYLKALTGMDA-ITLEPAAGAHGELTGILIIRAYHEDRG 151 (474)
T ss_dssp CCCCCHHHHHHHHTTS--SCCTTS-CGGGCHHHHHHHHHHHHHHHHHHTCSE-EECCCSSHHHHHHHHHHHHHHHHHHTT
T ss_pred ccCCHHHHHHHHHHHH--hcCCCC-chhhChHHHHHHHHHHHHHHHHHCCCc-eeecChHHHHHHHHHHHHHHHHHHhcC
Confidence 3444566676665422 124432 122356677889999999999999874 466889999999987777642223578
Q ss_pred C-----EEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccCCceEEEEeccccccccc-cChHHHHH
Q psy15216 1483 K-----HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVI-QPILEIGE 1556 (2602)
Q Consensus 1483 d-----~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~-~~l~~I~~ 1556 (2602)
| +|+++.+.|+++...+... |++++.++.++++.+|+++|+++++++|++|++++| |+||.+ .|+++|.+
T Consensus 152 d~~~r~~Vlv~~~~h~~~~~~~~~~---G~~vv~v~~~~~~~~d~~~L~~~i~~~t~~v~~~~p-n~~G~~~~~l~~i~~ 227 (474)
T 1wyu_B 152 EGRTRRVVLVPDSAHGSNPATASMA---GYQVREIPSGPEGEVDLEALKRELGPHVAALMLTNP-NTLGLFERRILEISR 227 (474)
T ss_dssp CTTTCCEEEEETTSCTHHHHHHHHT---TCEEEEECBCTTSSBCHHHHHHHCSTTEEEEEECSS-CTTSCCCTTHHHHHH
T ss_pred CccCCCEEEEeCCcChhhHHHHHHC---CCEEEEecCCCCCCcCHHHHHHhhCCCceEEEEECC-CCCcccCCCHHHHHH
Confidence 7 9999999999988776554 999999999888999999999999999999999998 689998 69999999
Q ss_pred HhhhcCCEEEEecccccCcc-cccCCCCCccEEEEccccccC-CC-----ceEEEEEecCCCCcccccccc--CC-----
Q psy15216 1557 LCRSKGVIFHCDAAQAVGKI-DINIQNYKVDLMSFSAHKIYG-PK-----GIGALYIRRNPRTRIEAQIHG--GG----- 1622 (2602)
Q Consensus 1557 ia~~~gi~vivD~a~~~g~~-~~~l~~~~~D~~v~S~~K~~g-p~-----G~G~l~~~~~~~~~l~~~~~g--~~----- 1622 (2602)
+|++||+++|+|++|+.+.. ..+...+++|++++|+||.++ |. |+|++++++++++.+...+.+ +.
T Consensus 228 l~~~~g~~li~Dea~~~~~~g~~~~~~~g~di~~~s~~K~~~~p~g~gG~~~G~~~~~~~l~~~l~~~~~~~~g~~~~~~ 307 (474)
T 1wyu_B 228 LCKEAGVQLYYDGANLNAIMGWARPGDMGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLPVPLVERGEEGFYLD 307 (474)
T ss_dssp HHHHHTCEEEEEGGGGGGTTTTCCHHHHTCSEEECCTTTTTCCCCTTSCCCCCCEEECGGGGGGCCSCEEEECSSCEEEE
T ss_pred HHHHcCCEEEEeCchhhhhccCCCcccCCCcEEEEeCccccccCCCCCCCCeEEEEEcHHHHHhCCCCeeeccCCeeEec
Confidence 99999999999999976653 223334578999999999554 53 589999998877666521111 10
Q ss_pred --cc---ccCCCCCcchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEe-
Q psy15216 1623 --HE---YGLRSGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN- 1695 (2602)
Q Consensus 1623 --~~---~~~~~gt~~~~~~~al~~aL~-~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~- 1695 (2602)
.+ .++..++.+...+.+...++. +..+++++..++..++++++.+.|.+ . ++.+..+. .. .+...+.++
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~g~~~l~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~-~~-~~~~~~~~~~ 383 (474)
T 1wyu_B 308 FDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKE-K-GYRVPYDG-PS-MHEFVAQPPE 383 (474)
T ss_dssp CCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-T-TCBCSSCS-SC-CSCEEEBCST
T ss_pred ccCcccCcccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-c-CcEecCCC-Cc-ceEEEEEcCC
Confidence 00 123344555544444444454 33456778889999999999999988 4 66653221 11 121233332
Q ss_pred cCCcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1696 FIEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1696 ~~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
..+..++...| +||.+ ++..+.. ...+++||+++.++|.+++++++++|++.
T Consensus 384 ~~~~~~l~~~L~~~Gi~~-~~~~~~~-----------------~~~~~lRis~~~~~t~e~id~~~~~L~~~ 437 (474)
T 1wyu_B 384 GFRALDLAKGLLELGFHP-PTVYFPL-----------------IVKEALMVEPTETEAKETLEAFAEAMGAL 437 (474)
T ss_dssp TCCHHHHHHHHHHTTCCC-CEESCST-----------------TSTTCEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHCCccc-ccccccc-----------------ccCCEEEEEeecCCCHHHHHHHHHHHHHH
Confidence 23456676666 67764 2322211 01378999999999999999999999974
|
| >2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.2e-21 Score=254.06 Aligned_cols=305 Identities=12% Similarity=0.077 Sum_probs=217.6
Q ss_pred HHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHHH-HHhCCcEEEEecc
Q psy15216 40 EKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDGFRVTYLKP 118 (2602)
Q Consensus 40 ~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~-~~~~G~~v~~v~~ 118 (2602)
.+..+++++++++++|.+ ++++++|+++|++.++.++. ++||+|+++.++|+++...+.. ++..|++++.++.
T Consensus 55 ~~~~~~l~~~la~~~g~~--~~~~~~~gt~a~~~al~~l~----~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 128 (412)
T 2cb1_A 55 DPTAKALEERLKALEGAL--EAVVLASGQAATFAALLALL----RPGDEVVAAKGLFGQTIGLFGQVLSLMGVTVRYVDP 128 (412)
T ss_dssp CHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHTTC----CTTCEEEEETTCCHHHHHHHHHTTTTTTCEEEEECS
T ss_pred ChHHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHHh----CCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECC
Confidence 356889999999999975 89999999999999999986 7999999999999998777765 4567999999985
Q ss_pred CCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHhcCCEEEEecccccccccccCCCCCccEEEecccc
Q psy15216 119 KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK 198 (2602)
Q Consensus 119 ~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~~g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K 198 (2602)
|+++|+++++++|++|++++++||||.+.|+++|.++|++||+++|+|++|+.+.........++|++++|+||
T Consensus 129 ------~~~~l~~~i~~~~~~v~~~~~~n~~G~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~~~~~~~di~~~S~~K 202 (412)
T 2cb1_A 129 ------EPEAVREALSAKTRAVFVETVANPALLVPDLEALATLAEEAGVALVVDNTFGAAGALCRPLAWGAHVVVESLTK 202 (412)
T ss_dssp ------SHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGTTTTSCCGGGGTCSEEEEETTT
T ss_pred ------CHHHHHHHhccCCeEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEECCCccccccCCccccCCeEEEECCcc
Confidence 38999999999999999999999999999999999999999999999999988732222234578999999999
Q ss_pred ccC-CCC-cEEEEEecCCCC-----ccc-ceecCCC---------cccccc------ccC-cchhHHHHHHHHHHHHHHh
Q psy15216 199 IYG-PKG-IGALYIRRNPRT-----RIE-AQIHGGG---------HEYGLR------SGT-LATHQIVGMGEAFRLARIE 254 (2602)
Q Consensus 199 ~~G-p~G-~G~l~~~~~~~~-----~l~-~~~~g~~---------~~~~~~------~gt-~~~~~~~al~~al~~~~~~ 254 (2602)
+++ |.+ +|++++.++... .+. |...++. ....++ .|. .+....+....++ +.
T Consensus 203 ~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l----~~ 278 (412)
T 2cb1_A 203 WASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPWEALRARCFPERVRTLGLSLCGMALSPFNAYLLFQGL----ET 278 (412)
T ss_dssp TTTCSSCCCCEEEEECCCSGGGGSGGGGCC-------HHHHGGGHHHHHHHHHHTTTTCCCCCHHHHHHHHHHG----GG
T ss_pred cccCCCCcEEEEEEeccccccccccccccccccccchhhccchHHHHHHHHHHHHHhcCCCCChHHhHHHHcCC----ch
Confidence 765 544 688877663211 111 1111110 001111 111 1111111111222 23
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCceEEe-CCCCC-------------CCCceEEEEEcccChhHHHHHh--CCeEEccc
Q psy15216 255 MKEELKRILFLQKRLYNGLMESIEEIYIN-GDMNN-------------RIPHNLNISFNFIEGESLLMAI--KDIAVSSG 318 (2602)
Q Consensus 255 ~~~~~~~~~~l~~~l~~~L~~~~~g~~l~-~~~~~-------------~~~~~~~~~~~~~~~~~~~~~L--~gI~v~~g 318 (2602)
+....++..++++++.+.|.+ .+++... .|... ..+.++.|.+ + +.+.+...+ .+|.+ .+
T Consensus 279 l~~~~~~~~~~~~~l~~~L~~-~~~v~~v~~p~~~~~p~~~~~~~~~~~~~~iv~~~~-~-~~~~~~~~l~~~~i~~-~~ 354 (412)
T 2cb1_A 279 VALRVARMSETARFLAERLQG-HPKVKALRYPGLPEDPAHRNARKYLASGGPILTLDL-G-DLERASRFLGAIRLLK-AA 354 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-CTTCSEEECTTSTTCTTHHHHHHHCSSSCSEEEEEC-S-SHHHHHHHHHHCSSEE-CS
T ss_pred HHHHHHHHHHHHHHHHHHHHc-CCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEe-C-CHHHHHHHHHhCCeee-ec
Confidence 455566677888999999987 6787633 23211 2345566666 4 555555444 68888 77
Q ss_pred ---------ccCCCCCC--ChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 319 ---------SACTSASL--EPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 319 ---------~~~~~~~~--~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
.+|....+ .++..+..+|+. ++.||+|++.++++++++.++++|++
T Consensus 355 s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~----~~~iR~s~g~~~~~~~i~~l~~al~~ 411 (412)
T 2cb1_A 355 NLGDARTLLVHPWTTTHSRLKEEARLQAGVT----PGLVRVSVGLEDPLDLLALFEEALEA 411 (412)
T ss_dssp CCSCSSCEEECTTTTTTTTSCHHHHHHTTCC----TTEEEEECCSSCHHHHHHHHHHHHHC
T ss_pred ccCCCcceeecCcccccccCCHHHHHhcCCC----CCeEEEEeccCCHHHHHHHHHHHHhh
Confidence 35654322 255667778875 48999999999999999999999974
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=4.1e-22 Score=253.97 Aligned_cols=297 Identities=16% Similarity=0.109 Sum_probs=225.3
Q ss_pred CCCCCCC-CCCHHHHHHHHHHHhh--hcCCCCCCCcchhhhHHHHHHHHHHHHHHHhC---CCCCcEEEeCCHHHHHHHH
Q psy15216 1 MDYSATT-PIDPRVVDKMIPYLRV--QFGNPASRNHIYGWTAEKAIEKARNEVAQLIY---ADPREIIWTSGATESNNLA 74 (2602)
Q Consensus 1 Ld~a~~~-~~p~~v~~a~~~~l~~--~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g---~~~~~Iv~t~g~T~al~~~ 74 (2602)
|+++.+. ++|+.+.+++.+.+.. ...++.. ...++|+.++++++ +++++|++++|+++|++++
T Consensus 24 l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~-----------~~~~lr~~la~~~~~~~~~~~~v~~~~G~~~al~~~ 92 (335)
T 1uu1_A 24 LALNENPFPFPEDLVDEVFRRLNSDALRIYYDS-----------PDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVM 92 (335)
T ss_dssp ESSCCCSSCCCHHHHHHHHHTCCGGGGGSCCCS-----------SCHHHHHHHHHHHTCSSCCGGGEEEESSHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHhhhhhhhcCCCC-----------chHHHHHHHHHHcCCCCCCHHHEEEcCChHHHHHHH
Confidence 3555553 6789999999887732 2222221 25678999999999 8888999999999999999
Q ss_pred HHhcccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccCCceEEEEecccCccccccc
Q psy15216 75 IKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP 154 (2602)
Q Consensus 75 ~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~ 154 (2602)
+.++ ||+|+++ |.|+++...++.. |++++.++.++++.+|++++ +++++|++++|+||||.++|
T Consensus 93 ~~~~-------gd~Vl~~-p~y~~~~~~~~~~---g~~~~~v~~~~~~~~d~~~l-----~~~~~v~l~~p~nptG~~~~ 156 (335)
T 1uu1_A 93 MLMF-------DRSVFFP-PTYSCYRIFAKAV---GAKFLEVPLTKDLRIPEVNV-----GEGDVVFIPNPNNPTGHVFE 156 (335)
T ss_dssp HHHS-------SEEEECS-SSCHHHHHHHHHH---TCEEEECCCCTTSCCCCCCC-----CTTEEEEEESSCTTTCCCCC
T ss_pred HHHh-------CCcEEEC-CCcHHHHHHHHHc---CCeEEEeccCCCCCCCHHHc-----CCCCEEEEeCCCCCCCCCCC
Confidence 9876 7999999 9999987766655 99999999877777888877 68999999999999999999
Q ss_pred HHHHHHHHHhcCCEEEEecccccccc--ccc-CCCCCccEEEeccccccCCCC--cEEEEEecCCCCcccceecCCCccc
Q psy15216 155 ILEIGELCRSKGVIFHCDAAQAVGKI--DIN-IQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEY 229 (2602)
Q Consensus 155 l~~I~~la~~~g~~livD~a~a~g~~--~~d-l~~~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~ 229 (2602)
.+++.++++..| ++|+|++|+.... .++ +...+.++++.|+||.+|++| +||+++++++++.+.+..
T Consensus 157 ~~~l~~l~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~------- 228 (335)
T 1uu1_A 157 REEIERILKTGA-FVALDEAYYEFHGESYVDFLKKYENLAVIRTFSKAFSLAAQRVGYVVASEKFIDAYNRVR------- 228 (335)
T ss_dssp HHHHHHHHHTTC-EEEEECTTHHHHCCCCGGGGGTCSSEEEEEESTTTTTCGGGCCEEEEECHHHHHHHHHHS-------
T ss_pred HHHHHHHHHhCC-EEEEECcchhhcchhHHHHhhhCCCEEEEecchhhcCCcccCeEEEEeCHHHHHHHHHhc-------
Confidence 999999999888 9999999973211 122 233456799999999999888 799999887766665432
Q ss_pred cccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcccChhHHHHH
Q psy15216 230 GLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMA 309 (2602)
Q Consensus 230 ~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (2602)
..++++.+...++.++|+. ..++++..++++++++++.+.|.+ . ++.+. ++. ..++.+.++..+..++...
T Consensus 229 --~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~-~~~---~~~~~~~~~~~~~~~~~~~ 299 (335)
T 1uu1_A 229 --LPFNVSYVSQMFAKVALDH-REIFEERTKFIVEERERMKSALRE-M-GYRIT-DSR---GNFVFVFMEKEEKERLLEH 299 (335)
T ss_dssp --CTTCSCHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHH-H-TCCBC-CCC---SSEEEEECCTHHHHHHHHH
T ss_pred --CCCCcCHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHH-C-CcEEc-CCC---CeEEEEECCCCCHHHHHHH
Confidence 1236777777777777774 345778888899999999999987 3 55543 221 2233444443234556666
Q ss_pred h--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 310 I--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 310 L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
| +||.++++ .+++|+|++ +.+|+++++++|++
T Consensus 300 l~~~gi~v~~~------------------------~~~iRis~~---~~~~i~~~~~~l~~ 333 (335)
T 1uu1_A 300 LRTKNVAVRSF------------------------REGVRITIG---KREENDMILRELEV 333 (335)
T ss_dssp HHHHTEEEEEE------------------------TTEEEEECC---CHHHHHHHHHHHHC
T ss_pred HHHCCEEEEEC------------------------CCeEEEEeC---CHHHHHHHHHHHHh
Confidence 6 69998861 278999997 57899999999985
|
| >1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.3e-22 Score=263.36 Aligned_cols=306 Identities=14% Similarity=0.129 Sum_probs=218.5
Q ss_pred cchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHH-HHHhCCc
Q psy15216 33 HIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIR-KLENDGF 111 (2602)
Q Consensus 33 ~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~-~~~~~G~ 111 (2602)
|.++....+..+++|+++|+++|.+ +.++++|+|+|+++++. +. ++||+|+++.++|++....+. .++..|+
T Consensus 47 ~~~~~~~~~~~~~lr~~la~~~g~~--~~i~~~sGt~a~~~al~-~~----~~gd~Vi~~~~~y~~~~~~~~~~~~~~G~ 119 (393)
T 1n8p_A 47 YEYSRSQNPNRENLERAVAALENAQ--YGLAFSSGSATTATILQ-SL----PQGSHAVSIGDVYGGTHRYFTKVANAHGV 119 (393)
T ss_dssp CCBTTTCCHHHHHHHHHHHHHTTCS--EEEEESCHHHHHHHHHH-TS----CSSCEEEEESSCCHHHHHHHHHTSTTTCS
T ss_pred cceecCCChhHHHHHHHHHHHhCCC--cEEEECChHHHHHHHHH-Hc----CCCCEEEEeCCCchHHHHHHHHHHHHcCc
Confidence 4455545567899999999999986 45556666999999999 66 799999999999998766654 3456799
Q ss_pred EEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHhc----CCEEEEecccccccccccCCCC
Q psy15216 112 RVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSK----GVIFHCDAAQAVGKIDINIQNY 187 (2602)
Q Consensus 112 ~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~~----g~~livD~a~a~g~~~~dl~~~ 187 (2602)
++++++.+ | ++|+++++++|++|++++|+||||.++|+++|.++|++| |+++|+|++|+.+... +...+
T Consensus 120 ~v~~v~~~-----d-~~l~~~i~~~t~lv~~~~~~nptG~~~~l~~i~~la~~~~~~~~~~livD~a~~~~~~~-~~~~~ 192 (393)
T 1n8p_A 120 ETSFTNDL-----L-NDLPQLIKENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPYIS-NPLNF 192 (393)
T ss_dssp CCEEESSH-----H-HHHHHHSCSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEECTTTHHHHC-CGGGG
T ss_pred EEEEeCCC-----h-HHHHHhcccCceEEEEECCCCCcceecCHHHHHHHHHHhCCCCCCEEEEeCCccccccC-CHHHc
Confidence 99999865 7 899999999999999999999999999999999999999 9999999999877643 44456
Q ss_pred CccEEEeccccccCCCC--c-EEEEEe-cCCCCcccceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHH
Q psy15216 188 KVDLMSFSAHKIYGPKG--I-GALYIR-RNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRIL 263 (2602)
Q Consensus 188 ~~D~~~~S~~K~~Gp~G--~-G~l~~~-~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~ 263 (2602)
++|++++|+||++|++| + |+++++ +++++.+.+... ...++++....+++..+++. +....++..
T Consensus 193 ~~di~~~S~sK~~g~~G~rigG~~~~~~~~~~~~l~~~~~-------~~g~~~~~~~~~~~~~~l~~----~~~~~~~~~ 261 (393)
T 1n8p_A 193 GADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQN-------AIGAIPSPFDAWLTHRGLKT----LHLRVRQAA 261 (393)
T ss_dssp TCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHH-------HHCCCCCHHHHHHHHHHHTT----HHHHHHHHH
T ss_pred CCeEEEEECcccccCCCCceeEEEEeCCHHHHHHHHHHHH-------hcCCCCCHHHHHHHHhccch----HHHHHHHHH
Confidence 79999999999999988 6 999985 555555543321 01123333333333344432 344455556
Q ss_pred HHHHHHHHHHhhccCc-eE-EeCCC--C-----------CC-C-CceEEEEEccc--ChhHHHHHh--CCeEEcccccCC
Q psy15216 264 FLQKRLYNGLMESIEE-IY-INGDM--N-----------NR-I-PHNLNISFNFI--EGESLLMAI--KDIAVSSGSACT 322 (2602)
Q Consensus 264 ~l~~~l~~~L~~~~~g-~~-l~~~~--~-----------~~-~-~~~~~~~~~~~--~~~~~~~~L--~gI~v~~g~~~~ 322 (2602)
+++..+.+.|.+ .+. +. +.-+. . .. . +.++.|.+++. +...++..+ .++.++.|..|+
T Consensus 262 ~~~~~l~~~L~~-~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~l~~l~~~~~~~s~G~~~s 340 (393)
T 1n8p_A 262 LSANKIAEFLAA-DKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGGAEAASKFASSTRLFTLAESLGGIES 340 (393)
T ss_dssp HHHHHHHHHHTS-CTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSCHHHHHHHHHHCSSSEECSCCCCSSC
T ss_pred HHHHHHHHHHHh-CCCCceEEECCCCCCCccHHHHHhhCCCCCCccEEEEEeCCcHHHHHHHHhhCCcceECCCCCCCcc
Confidence 666777777766 444 43 21110 0 00 2 45666777642 345666666 466777787665
Q ss_pred CCCC--ChHH------HHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 323 SASL--EPSY------VLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 323 ~~~~--~~~~------~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
.... .+++ .+..+|++ ++.||+|++.++++++++.+.++|++
T Consensus 341 ~~~~p~~~~h~~~~~~~~~~~g~~----~~~iRlS~g~~~~~~~i~~l~~al~~ 390 (393)
T 1n8p_A 341 LLEVPAVMTHGGIPKEAREASGVF----DDLVRISVGIEDTDDLLEDIKQALKQ 390 (393)
T ss_dssp EEECTTTTTSCSSCTTTTTTTSCC----TTEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred eeeccccccccccCHHHHHhcCCC----CCeEEEEEccCCHHHHHHHHHHHHHH
Confidence 3211 1111 23455654 48999999999999999999999985
|
| >2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ... | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-22 Score=266.65 Aligned_cols=336 Identities=17% Similarity=0.154 Sum_probs=241.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhhc--CCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcc
Q psy15216 2 DYSATTPIDPRVVDKMIPYLRVQF--GNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAA 79 (2602)
Q Consensus 2 d~a~~~~~p~~v~~a~~~~l~~~~--~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~ 79 (2602)
|+++.+|.|+.+.+++.+.+...+ ++|....+........+.+.+|+++++++|++++.+++++ +|+|+.+++.++.
T Consensus 28 ~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~g~~~~~i~~~s-Gt~a~~~a~~~~~ 106 (405)
T 2vi8_A 28 LIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAEHANVQPHS-GAQANMAVYFTVL 106 (405)
T ss_dssp CCTTCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSS-HHHHHHHHHHHHC
T ss_pred eccCcccCCHHHHHHHHHHhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCCceEEEecC-cHHHHHHHHHHhc
Confidence 567777889999999998875322 2333211111123344555688999999998754444454 5999999999987
Q ss_pred cccccCCCEEEEcCCCCcccHHHH---HHHHhCCcEEEEeccC-CCCccChHHHHhhccC-CceEEEEecccCccccccc
Q psy15216 80 HFYKKRGKHIITVQTEHKSVLDSI---RKLENDGFRVTYLKPK-NNGLITLSQLEEKICS-DTILVSVMLVNNEIGVIQP 154 (2602)
Q Consensus 80 ~~~~~~gd~Vlv~~~~~~s~~~~~---~~~~~~G~~v~~v~~~-~~~~ld~e~l~~~i~~-~tklv~i~~~~npTG~~~~ 154 (2602)
++||+|+++.++|+++...+ ... ..+.+++.++++ .++.+|+++|++++++ ++++|+++ ++| .|...|
T Consensus 107 ----~~gd~Vl~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~-~~~-~~~~~~ 179 (405)
T 2vi8_A 107 ----EHGDTVLGMNLSHGGHLTHGSPVNFS-GVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAA-AAA-YPRIID 179 (405)
T ss_dssp ----CTTCEEEEECGGGTCCTTTTCTTSHH-HHHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEEEC-CSS-CCSCCC
T ss_pred ----CCCCEEEEecccccchhcccchhhhc-cceeEEEecccccccCCcCHHHHHHHHHhcCCeEEEEe-CCC-CCccCC
Confidence 79999999999999985421 122 113478888775 4678999999999986 88888874 444 467779
Q ss_pred HHHHHHHHHhcCCEEEEecccccccccccCCCC---CccEEEeccccccC-CCCcEEEEEecCCCCcccceecCCCcccc
Q psy15216 155 ILEIGELCRSKGVIFHCDAAQAVGKIDINIQNY---KVDLMSFSAHKIYG-PKGIGALYIRRNPRTRIEAQIHGGGHEYG 230 (2602)
Q Consensus 155 l~~I~~la~~~g~~livD~a~a~g~~~~dl~~~---~~D~~~~S~~K~~G-p~G~G~l~~~~~~~~~l~~~~~g~~~~~~ 230 (2602)
+++|.++|++||+++|+|++|+.+..+.+.... .+|++++|+||++| |.| |++++++++++.+.+....
T Consensus 180 l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~~~g~~g-G~~~~~~~~~~~l~~~~~~------ 252 (405)
T 2vi8_A 180 FAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRG-GMILCQEQFAKQIDKAIFP------ 252 (405)
T ss_dssp HHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTTCSEEEEESSSTTCCCSC-EEEEECHHHHHHHHHHHTT------
T ss_pred HHHHHHHHHHcCCEEEEEccccccccccCcCCCccccCCEEEEeccccCCCCCC-eEEEEcHHHHHHHHhhhcc------
Confidence 999999999999999999999876443332222 57899999999765 888 9999998776666544321
Q ss_pred ccccCcchhHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc--cChhHHH
Q psy15216 231 LRSGTLATHQIVGMGEAFRLAR-IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF--IEGESLL 307 (2602)
Q Consensus 231 ~~~gt~~~~~~~al~~al~~~~-~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~--~~~~~~~ 307 (2602)
+..++++..+++++.++++... .++++..++..++++++.+.|.+ . |+.+..+.. ....+.+.++. .+...+.
T Consensus 253 ~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 328 (405)
T 2vi8_A 253 GIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQN-E-GFTLVSGGT--DNHLLLVDLRPQQLTGKTAE 328 (405)
T ss_dssp TTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-T-TCEEGGGSC--SSSEEEEECGGGTCCHHHHH
T ss_pred cccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-C-CCeEecCCC--CceEEEEEccCCCCCHHHHH
Confidence 2346777888888878888654 57789999999999999999988 4 888875432 23455566653 3556666
Q ss_pred HHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCC----CCCHHHHHHHHHHHHhh
Q psy15216 308 MAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGR----FTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 308 ~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~----~~t~edid~li~~L~~~ 369 (2602)
..| +||.+++|..+... .+ ....+++|++++. ..+++|+++++++|++.
T Consensus 329 ~~l~~~gi~v~~g~~~~~~----------~~---~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~ 383 (405)
T 2vi8_A 329 KVLDEVGITVNKNTIPYDP----------ES---PFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLV 383 (405)
T ss_dssp HHHHHHTEECEEECCTTCS----------SC---TTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHcCceeccCcCcccc----------CC---CCCCCceEEeeeeeeecCCCHHHHHHHHHHHHHH
Confidence 666 69999988642100 00 0113689999986 46799999999999874
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.88 E-value=4e-22 Score=260.86 Aligned_cols=314 Identities=13% Similarity=0.071 Sum_probs=233.2
Q ss_pred CCCHHHHHHHHHHHhh--ccCCCCCccchhHHHHHHHHHHHHHHHHHHh----CCC--C-CcEEEeCCHHHHHHHHHHhh
Q psy15216 1404 PIDPRVVDKMIPYLRV--QFGNPASRNHIYGWTAEKAIEKARNEVAQLI----YAD--P-REIIWTSGATESNNLAIKGA 1474 (2602)
Q Consensus 1404 ~~~~~v~eal~~~l~~--~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~----g~~--~-~~iv~t~gaT~al~~al~~l 1474 (2602)
..++.+.+++.+.++. ...++.. ....++|+++++++ |.+ + ++|++|+|+++|+..++.++
T Consensus 60 ~~~~~v~~a~~~~~~~~~~~~y~~~----------~g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G~~~al~~~~~~l 129 (404)
T 2o1b_A 60 PTPQGIIDHFQKALTIPENQKYGAF----------HGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNGLVAVPTCV 129 (404)
T ss_dssp CCCHHHHHHHHHHTTCHHHHSCCCT----------TCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCCC----------CCCHHHHHHHHHHHHHHhCCCCCCcccEEEcCCcHHHHHHHHHHh
Confidence 4578899999888743 2223321 11356777777776 864 4 78999999999999999998
Q ss_pred hhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCC-CCCcChhHHHhhccCCceEEEEeccccccccccC---
Q psy15216 1475 AHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP--- 1550 (2602)
Q Consensus 1475 ~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~-~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~--- 1550 (2602)
. ++||+|+++.|+|+++...+... |++++.++.++ ++.+|+++|++++++++++|++++|+||||.++|
T Consensus 130 ~----~~gd~Vl~~~p~y~~~~~~~~~~---g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~ 202 (404)
T 2o1b_A 130 I----NPGDYVLLPDPGYTDYLAGVLLA---DGKPVPLNLEPPHYLPDWSKVDSQIIDKTKLIYLTYPNNPTGSTATKEV 202 (404)
T ss_dssp C----CTTCEEEEEESCCSSHHHHHHHT---TCEEEEEECCTTTCCCCGGGSCHHHHHHEEEEEECSSCTTTCCCCCHHH
T ss_pred c----CCCCEEEEcCCCchhHHHHHHHC---CCEEEEeccCcccCcCCHHHHHHhhccCceEEEEcCCCCCCCccCCHHH
Confidence 6 79999999999999988766554 99999999876 4458999999999888999999999999999997
Q ss_pred hHHHHHHhhhcCCEEEEecccccCcc---cccCCCC----CccEEEEccccccCCCc--eEEEEEecCCCCccccccccC
Q psy15216 1551 ILEIGELCRSKGVIFHCDAAQAVGKI---DINIQNY----KVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGG 1621 (2602)
Q Consensus 1551 l~~I~~ia~~~gi~vivD~a~~~g~~---~~~l~~~----~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~~g~ 1621 (2602)
+++|.++|++||+++|+|++|+.... +.++..+ +.++++.|+||.+|++| +||+++++++++.+......
T Consensus 203 l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~~- 281 (404)
T 2o1b_A 203 FDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASENGKDVAIEIYSLSKGYNMSGFRVGFAVGNKDMIQALKKYQTH- 281 (404)
T ss_dssp HHHHHHHHTTSSCEEEEECTTTTCBSSSCCCCGGGSTTHHHHEEEEEESTTTTTCGGGCCEEEEECHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCCEEEEEecchhccCchhheEeEecCHHHHHHHHHHHhh-
Confidence 77899999999999999999976431 2222222 45789999999888777 79999988776665543211
Q ss_pred CccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEe-cCCcH
Q psy15216 1622 GHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN-FIEGE 1700 (2602)
Q Consensus 1622 ~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~-~~~~~ 1700 (2602)
..++.+...+.++.++|+....++++.++++.++++++.+.|.+ . ++.+..+.. +....+.++ ..+..
T Consensus 282 ------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~---g~~~~~~~~~~~~~~ 350 (404)
T 2o1b_A 282 ------TNAGMFGALQDAAIYALNHYDDFLEEQSNVFKTRRDRFEAMLAK-A-DLPFVHAKG---GIYVWLETPPGYDSE 350 (404)
T ss_dssp ------HCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH-T-TCCEECCCB---SSEEEEECCTTCCHH
T ss_pred ------ccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHh-c-CCeecCCCc---ceEEEEeCCCCCCHH
Confidence 12356666666676777643456788888899999999999987 3 666553321 122334444 23445
Q ss_pred HHHHhc---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1701 SLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1701 ~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
++...| +||.+++|..|... ..+++||+++. +.+++++++++|++.
T Consensus 351 ~l~~~l~~~~gi~v~~g~~f~~~-----------------~~~~iRis~~~--~~e~l~~~l~~l~~~ 399 (404)
T 2o1b_A 351 QFEQFLVQEKSILVAPGKPFGEN-----------------GNRYVRISLAL--DDQKLDEAAIRLTEL 399 (404)
T ss_dssp HHHHHHHHHHCEECEESGGGCGG-----------------GTTEEEEECCS--CTTHHHHHHHHHHGG
T ss_pred HHHHHHHHHCCEEEeCchhhCcC-----------------CCCeEEEEEcC--CHHHHHHHHHHHHHH
Confidence 666554 59999998877431 13789999985 678999999999863
|
| >3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.88 E-value=6.5e-23 Score=265.90 Aligned_cols=328 Identities=14% Similarity=0.138 Sum_probs=227.5
Q ss_pred HHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEc
Q psy15216 1409 VVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITV 1488 (2602)
Q Consensus 1409 v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~ 1488 (2602)
+.+++.+.+...+..+. ....++|+.++++++.+ ++++++|+|+|+..++.++. +++||+|+++
T Consensus 21 ~~~~~~~~~~~~~~~~~-----------~~~~~l~~~la~~~~~~--~~~~~~~gt~a~~~~~~~~~---~~~gd~v~~~ 84 (374)
T 3uwc_A 21 YLNDLREFIKTADFTLG-----------AELEKFEKRFAALHNAP--HAIGVGTGTDALAMSFKMLN---IGAGDEVITC 84 (374)
T ss_dssp HHHHHHHHHHHTCCSSC-----------HHHHHHHHHHHHHTTCS--EEEEESCHHHHHHHHHHHTT---CCTTCEEEEE
T ss_pred HHHHHHHHHHcCCcccC-----------hhHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHcC---CCCCCEEEEC
Confidence 78888887765322221 34688999999999976 88999999999999999982 2899999999
Q ss_pred CCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccCCceEEEEeccccccccccChHHHHHHhhhcCCEEEEe
Q psy15216 1489 QTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCD 1568 (2602)
Q Consensus 1489 ~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~~ia~~~gi~vivD 1568 (2602)
.++|+++...+... |++++.++.+.++.+|++++++++++++++|+ ++||||.+.|+++|.++|++||+++|+|
T Consensus 85 ~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~---~~n~~G~~~~~~~i~~~~~~~~~~li~D 158 (374)
T 3uwc_A 85 ANTFIASVGAIVQA---GATPVLVDSENGYVIDPEKIEAAITDKTKAIM---PVHYTGNIADMPALAKIAKKHNLHIVED 158 (374)
T ss_dssp SSSCHHHHHHHHHT---TCEEEEECBCTTSSBCGGGTGGGCCTTEEEEC---CBCGGGCCCCHHHHHHHHHHTTCEEEEE
T ss_pred CCccHHHHHHHHHc---CCEEEEEecCCCCCcCHHHHHHhCCCCceEEE---EeCCcCCcCCHHHHHHHHHHcCCEEEEe
Confidence 99999987766544 99999999987788999999999999998887 7889999999999999999999999999
Q ss_pred cccccCcccccCCCCC--ccEEEEccc--cccCCCc-eEEEEEecC-CCCccccccccCCccccCCC--CCcchhHHHHH
Q psy15216 1569 AAQAVGKIDINIQNYK--VDLMSFSAH--KIYGPKG-IGALYIRRN-PRTRIEAQIHGGGHEYGLRS--GTLATHQIVGM 1640 (2602)
Q Consensus 1569 ~a~~~g~~~~~l~~~~--~D~~v~S~~--K~~gp~G-~G~l~~~~~-~~~~l~~~~~g~~~~~~~~~--gt~~~~~~~al 1640 (2602)
++|+.|.. ++....+ .|++++|+| |++|+.| .|+++.+++ +.+.+.+...++.. ..+.. .+.+. .+.++
T Consensus 159 ~~~~~g~~-~~~~~~~~~~d~~~~s~~~~K~l~~~g~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~ 235 (374)
T 3uwc_A 159 ACQTILGR-INDKFVGSWGQFACFSLHPLKNLNVWSDAGVIITHSDEYAEKLRLYRNHGLI-NRDVCVEYGINC-RMDTI 235 (374)
T ss_dssp CTTCTTCE-ETTEETTSSSSEEEEECSSSSSSCCSSCCEEEEESCHHHHHHHHHHTBTTEE-ETTEESSCCCBC-BCCHH
T ss_pred CCCccCce-eCCeeccccccEEEEeCCCCCcCCccceeEEEEeCCHHHHHHHHHHHhcCcc-ccCccccccccC-CCCHH
Confidence 99998764 3333333 699999988 9777644 677777653 33334433322211 11111 11111 11222
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhcCCc-EEEeCCCCCCCCceEEEEEecCCcHHHHHhc--CCEEEccccc
Q psy15216 1641 GEAFRL-ARIEMKEELKRILFLQKRLYNGLMESIEE-IYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDIAVSSGSA 1716 (2602)
Q Consensus 1641 ~~aL~~-~~~~~~~~~~~~~~l~~~l~~~L~~~~~g-l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~v~~g~~ 1716 (2602)
.+++.. ....+++..++..++.+++.+.|.+ .++ +.+...+....+....+.+...+...+...| +||.++++..
T Consensus 236 ~aa~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~v~~~~~ 314 (374)
T 3uwc_A 236 QAVIANRLMNQLETITEKRRGIAHLYDQSFVD-LSEFIDVPVRREGVYHVFHIYVLRVKYRDQLFQYLKDNGIEVKIHYP 314 (374)
T ss_dssp HHHHHHHHGGGHHHHHHHHHHHHHHHHHHTGG-GTTTEECCCCCTTEECCCSSEEEEETTHHHHHHHHHHTTBCCBCSCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCeEEeccCCCCCceeeEEEEEEcCCHHHHHHHHHHCCCccccCCC
Confidence 233332 2234677888889999999999987 666 7765433322222223333444666777666 7999887752
Q ss_pred cCCCCCChhHHHHHcCCC-------ccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1717 CTSASLEPSYVLRALGCN-------DELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1717 ~~~~~~~~~~~~~~~~~~-------~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
... +..+.+ ..++.. .....+.+|++++.++|.+||++++++|++.
T Consensus 315 ~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~ 367 (374)
T 3uwc_A 315 IAM-HLQPAA--KSLGYQQGDFPMAEKHGEAVITLPAHPYLTEEEINYIIKKVREF 367 (374)
T ss_dssp SCG-GGSGGG--GGGCCCTTSCHHHHHHHHHEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred Ccc-ccChhh--hhcCCccCCCccHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHH
Confidence 110 011111 111111 1112368999999999999999999999974
|
| >2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.6e-22 Score=259.27 Aligned_cols=301 Identities=13% Similarity=0.082 Sum_probs=215.3
Q ss_pred HHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHH-HHhCCcEEEEecc
Q psy15216 1436 EKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDGFRVTYLKP 1514 (2602)
Q Consensus 1436 ~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~-~~~~G~~v~~v~~ 1514 (2602)
....+++|+.+++++|.+ ++++++|+++|+++++.++. ++||+|+++.+.|+++...+.. ++..|+++++++.
T Consensus 81 ~p~~~~le~~lA~l~g~~--~~i~~ssGt~Ai~~al~~l~----~~Gd~Vi~~~~~y~~~~~~~~~~l~~~G~~v~~v~~ 154 (415)
T 2fq6_A 81 TLTHFSLQQAMCELEGGA--GCVLFPCGAAAVANSILAFI----EQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDP 154 (415)
T ss_dssp CHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHTTC----CTTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECT
T ss_pred CchHHHHHHHHHHHhCCC--eEEEeCCHHHHHHHHHHHHh----CCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEECC
Confidence 346788999999999975 56777899999999999886 7999999999999998877743 3556999999975
Q ss_pred CCCCCcChhHHHhhccCCceEEEEeccccccccccChHHHHHHhhh--cCCEEEEecccccCcccccCCCCCccEEEEcc
Q psy15216 1515 KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRS--KGVIFHCDAAQAVGKIDINIQNYKVDLMSFSA 1592 (2602)
Q Consensus 1515 ~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~~ia~~--~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~ 1592 (2602)
+ |+++|+++|+++|++|++++++||+|.++|+++|+++|++ ||+++++|++|+.+....++ ++++|++++|+
T Consensus 155 ~-----d~~~le~ai~~~tklV~~e~~~NptG~v~dl~~I~~la~~~~~g~~livD~a~a~~~~~~p~-~~g~Div~~S~ 228 (415)
T 2fq6_A 155 L-----IGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKAL-DFGIDVSIQAA 228 (415)
T ss_dssp T-----CGGGGGGGCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEECTTTTTTSSCGG-GGTCSEEEEET
T ss_pred C-----CHHHHHHhhccCCcEEEEECCCCCCCEeecHHHHHHHHHhhcCCCEEEEECCCcccccCCcc-ccCCeEEEEeC
Confidence 4 8999999999999999999999999999999999999999 99999999999866432222 46799999999
Q ss_pred ccccCCCc---eEEEEEecCCCCccccccccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15216 1593 HKIYGPKG---IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGL 1669 (2602)
Q Consensus 1593 ~K~~gp~G---~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L 1669 (2602)
||++|++| .|+++.++++++.+..... ...++.+....+.+..+++. +....++..+++..+.+.|
T Consensus 229 sK~lg~~g~~~~G~l~~~~~~~~~l~~~~~-------~~G~~~~~~~a~~~~~~l~~----l~~r~~~~~~n~~~l~~~L 297 (415)
T 2fq6_A 229 TKYLVGHSDAMIGTAVCNARCWEQLRENAY-------LMGQMVDADTAYITSRGLRT----LGVRLRQHHESSLKVAEWL 297 (415)
T ss_dssp TTTTTCSSSCCCEEEEECTTTHHHHHHHHH-------HTTCCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCCceEEEEEeCHHHHHHHHHHHH-------hcCCCCCHHHHHHHHhhhhH----HHHHHHHHHHHHHHHHHHH
Confidence 99888776 6999998765554443211 01122232222222233332 3445555666777777888
Q ss_pred hhcCCcEEEe-CCC--C-----------CCCCceEEEEEecC----CcHHHHHhc--CCEEEccccccCCCCC-ChhHH-
Q psy15216 1670 MESIEEIYIN-GDM--N-----------NRIPHNLNISFNFI----EGESLLMAI--KDIAVSSGSACTSASL-EPSYV- 1727 (2602)
Q Consensus 1670 ~~~~~gl~i~-~~~--~-----------~~~~~~~~~~~~~~----~~~~~~~~L--~gI~v~~g~~~~~~~~-~~~~~- 1727 (2602)
.+ .|.+.-. -+. . ...+.+..|.+++. +...++..| .++.++.|+.|..... .|...
T Consensus 298 ~~-~~~v~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~g~~~~~~~~~~l~~l~~~~~a~s~G~~~s~~~~~~p~~~s 376 (415)
T 2fq6_A 298 AE-HPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFSMAYSWGGYESLILANQPEHIA 376 (415)
T ss_dssp HT-CTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCCCHHHHHHHHTTCSSCEECSCCCSSSCEEEEECHHHHH
T ss_pred Hc-CCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCCCCHHHHHHHHHhCCcCeEeccCCCCceeEEecCCCccc
Confidence 76 4555321 111 0 12355666776642 334556555 5678888877754311 01111
Q ss_pred --HH--HcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1728 --LR--ALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1728 --~~--~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
.. .+|.. .+.||||++.++++++++.+.++|++
T Consensus 377 ~~~~~~~~g~~----~~~iRlS~G~e~~~d~i~~l~~al~~ 413 (415)
T 2fq6_A 377 AIRPQGEIDFS----GTLIRLHIGLEDVDDLIADLDAGFAR 413 (415)
T ss_dssp TTCTTCCCCCC----SCEEEEECCSSCHHHHHHHHHHHHHT
T ss_pred cccchhhcCCC----CCEEEEEecCCCHHHHHHHHHHHHHh
Confidence 11 23433 48999999999999999999999974
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-21 Score=259.22 Aligned_cols=318 Identities=14% Similarity=0.129 Sum_probs=233.8
Q ss_pred CCCHHHHHHHHHHHhhc----cCCCCCccchhHHHHHHHHHHHHHHHHHH----hC--CCCC-cEEEeCCHHHHHHHHHH
Q psy15216 1404 PIDPRVVDKMIPYLRVQ----FGNPASRNHIYGWTAEKAIEKARNEVAQL----IY--ADPR-EIIWTSGATESNNLAIK 1472 (2602)
Q Consensus 1404 ~~~~~v~eal~~~l~~~----~~np~~~~~~~~~~~~~~~~~lr~~ia~~----~g--~~~~-~iv~t~gaT~al~~al~ 1472 (2602)
+.++.+.+++.+.++.. ..++.. ....++|++++++ +| ++++ +|++|+|+++|+..++.
T Consensus 50 ~~~~~v~~a~~~~~~~~~~~~~~y~~~----------~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~~ 119 (429)
T 1yiz_A 50 HAPKYALNALAAAANSPDPLANQYTRG----------FGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYATIQ 119 (429)
T ss_dssp CCCHHHHHHHHHHHTCSCGGGGSCCCS----------SCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhccccCccCCCCC----------CCcHHHHHHHHHHHHHHhCCCCCCcCCEEEecChHHHHHHHHH
Confidence 46788999999988641 222221 0123455555555 47 4678 99999999999999999
Q ss_pred hhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCC----------CCCcChhHHHhhccCCceEEEEeccc
Q psy15216 1473 GAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN----------NGLITLSQLEEKICSDTILVSVMLVN 1542 (2602)
Q Consensus 1473 ~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~----------~~~id~d~l~~~i~~~t~lv~l~~~~ 1542 (2602)
++. ++||+|+++.|.|+++...+... |++++.++.++ ++.+|+++|++++++++++|++++|+
T Consensus 120 ~~~----~~gd~Vl~~~p~y~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~ 192 (429)
T 1yiz_A 120 GHV----DEGDEVIIIEPFFDCYEPMVKAA---GGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEKTKMIIINTPH 192 (429)
T ss_dssp HHC----CTTCEEEEEESCCTTHHHHHHHT---TCEEEEEECBCCCSSSSEEGGGCBCCHHHHHHHCCTTEEEEEEESSC
T ss_pred Hhc----CCCCEEEEcCCCchhHHHHHHHc---CCEEEEEeCCcccccccccccCcccCHHHHHHHhccCceEEEECCCC
Confidence 986 79999999999999987766544 99999998865 35689999999999999999999999
Q ss_pred cccccccC---hHHHHHHhhhcCCEEEEecccccCc------ccc-cCC-CCCccEEEEccccccCCCc--eEEEEEecC
Q psy15216 1543 NEIGVIQP---ILEIGELCRSKGVIFHCDAAQAVGK------IDI-NIQ-NYKVDLMSFSAHKIYGPKG--IGALYIRRN 1609 (2602)
Q Consensus 1543 n~tG~~~~---l~~I~~ia~~~gi~vivD~a~~~g~------~~~-~l~-~~~~D~~v~S~~K~~gp~G--~G~l~~~~~ 1609 (2602)
||||.++| +++|.++|++||+++|+|++|+... .++ .+. ..+.++++.|+||.+|++| +|+++++++
T Consensus 193 nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~~~~ 272 (429)
T 1yiz_A 193 NPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTGWKIGWAYGPEA 272 (429)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTTTGGGEEEEEEHHHHHTCGGGCCEEEESCHH
T ss_pred CCCCccCCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhhccCCcCceEEEecchhccCCCCcceEEEEeCHH
Confidence 99999997 8899999999999999999987421 122 222 3468999999999888888 899999887
Q ss_pred CCCccccccccCCccccCCCCCcchhHHHHHHHHHHH-----H--HHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCC
Q psy15216 1610 PRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRL-----A--RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDM 1682 (2602)
Q Consensus 1610 ~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~-----~--~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~ 1682 (2602)
+++.+.... ....++.+.+.+.++.++|+. . ...+++.++++.++++++.+.|.+ . ++.+..+.
T Consensus 273 ~~~~l~~~~-------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~ 343 (429)
T 1yiz_A 273 LLKNLQMVH-------QNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAE-V-GMNPTVPQ 343 (429)
T ss_dssp HHHHHHHHH-------HTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHH-H-TCEEEECS
T ss_pred HHHHHHHHH-------hhcccCCChHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHHHHh-C-CCcccCCC
Confidence 666554332 112345666666677777775 3 345788888999999999999987 3 66665332
Q ss_pred CCCCCceEEEEEecC-------------CcHHHHHhc---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEec
Q psy15216 1683 NNRIPHNLNISFNFI-------------EGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTI 1746 (2602)
Q Consensus 1683 ~~~~~~~~~~~~~~~-------------~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~ 1746 (2602)
. .....+.++.. +..++...| +||.+++|..|.... ..+ ...+++||++
T Consensus 344 ~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~~--------~~~----~~~~~iRis~ 408 (429)
T 1yiz_A 344 G---GYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEP--------NKH----LGEDFVRYCF 408 (429)
T ss_dssp B---SSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHHHHTSEECBCGGGGSCGG--------GGG----GTTTEEEEEC
T ss_pred c---ceEEEEEcccccccccccccccCCCHHHHHHHHHHhCCEEEeCchHhCCCc--------ccC----CCCCeEEEEe
Confidence 2 22334444432 234555544 799999987765320 000 0137999999
Q ss_pred CCCCCHHHHHHHHHHHHH
Q psy15216 1747 GRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1747 ~~~~t~edid~li~~L~~ 1764 (2602)
+ ++.+++++++++|++
T Consensus 409 ~--~~~e~i~~~l~~l~~ 424 (429)
T 1yiz_A 409 F--KKDENLQKAAEILRK 424 (429)
T ss_dssp C--SCHHHHHHHHHHHHH
T ss_pred c--CCHHHHHHHHHHHHH
Confidence 8 489999999999986
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.8e-22 Score=263.82 Aligned_cols=316 Identities=13% Similarity=0.139 Sum_probs=232.2
Q ss_pred CCHHHHHHHHHHHhhc----cCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhcc
Q psy15216 1405 IDPRVVDKMIPYLRVQ----FGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKK 1480 (2602)
Q Consensus 1405 ~~~~v~eal~~~l~~~----~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~ 1480 (2602)
.++.+.+++.+.++.. ..++.. ....++|+++++++|+++++|++|+|+++|+..++.++. +
T Consensus 48 ~~~~v~~a~~~~~~~~~~~~~~y~~~----------~~~~~l~~~la~~~g~~~~~v~~~~g~~~al~~~~~~~~----~ 113 (397)
T 2zyj_A 48 PKEEAAEAAARILREKGEVALQYSPT----------EGYAPLRAFVAEWIGVRPEEVLITTGSQQALDLVGKVFL----D 113 (397)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTSCCCT----------TCCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHC----C
T ss_pred CHHHHHHHHHHHHHhcchhhhCCCCC----------CCCHHHHHHHHHHhCCChhhEEEeccHHHHHHHHHHHhC----C
Confidence 4567888888877642 223221 124678999999999888899999999999999999986 7
Q ss_pred CCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccC-CceEE-EEeccccccccccChH---HHH
Q psy15216 1481 RGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS-DTILV-SVMLVNNEIGVIQPIL---EIG 1555 (2602)
Q Consensus 1481 ~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~-~t~lv-~l~~~~n~tG~~~~l~---~I~ 1555 (2602)
+||+|+++.|+|+++...+.. .|++++.++.++++ +|+++|++++++ ++++| ++++++||||.++|.+ +|.
T Consensus 114 ~gd~Vl~~~p~y~~~~~~~~~---~g~~~~~~~~~~~~-~d~~~l~~~l~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~ 189 (397)
T 2zyj_A 114 EGSPVLLEAPSYMGAIQAFRL---QGPRFLTVPAGEEG-PDLDALEEVLKRERPRFLYLIPSFQNPTGGLTPLPARKRLL 189 (397)
T ss_dssp TTCEEEEEESCCHHHHHHHHT---TCCEEEEEEEETTE-ECHHHHHHHHHHCCCSCEEECCBSCTTTCCBCCHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHH---cCCEEEecCcCCCC-CCHHHHHHHHhhcCCeEEEECCCCcCCCCCcCCHHHHHHHH
Confidence 999999999999987766544 49999999887655 899999999986 88887 5799999999999854 899
Q ss_pred HHhhhcCCEEEEecccccCcc----cccCCCCCc------cEEEEccccccCCCc--eEEEEEecCCCCccccccccCCc
Q psy15216 1556 ELCRSKGVIFHCDAAQAVGKI----DINIQNYKV------DLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGH 1623 (2602)
Q Consensus 1556 ~ia~~~gi~vivD~a~~~g~~----~~~l~~~~~------D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~~g~~~ 1623 (2602)
++|++||+++|+|++|+.+.. +.++..++. .+++.|+||.+| +| +||+++++++++.+.....+
T Consensus 190 ~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~G~r~G~~~~~~~~~~~l~~~~~~--- 265 (397)
T 2zyj_A 190 QMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGYPGVIYLGSFSKVLS-PGLRVAFAVAHPEALQKLVQAKQG--- 265 (397)
T ss_dssp HHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHHTCCCEEEEEESTTTTC-GGGCCEEEECCHHHHHHHHHHHHH---
T ss_pred HHHHHcCCEEEEeCCcccccCCCCCCCchhhhCcccCCCeEEEEeccccccc-ccceeEEEecCHHHHHHHHHHHHh---
Confidence 999999999999999986432 222322322 388899999888 56 79999987766655433211
Q ss_pred cccCCCCCcchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcCC-cEEEeCCCCCCCCceEEEEEe-cCCcH
Q psy15216 1624 EYGLRSGTLATHQIVGMGEAFRLAR-IEMKEELKRILFLQKRLYNGLMESIE-EIYINGDMNNRIPHNLNISFN-FIEGE 1700 (2602)
Q Consensus 1624 ~~~~~~gt~~~~~~~al~~aL~~~~-~~~~~~~~~~~~l~~~l~~~L~~~~~-gl~i~~~~~~~~~~~~~~~~~-~~~~~ 1700 (2602)
+..++ +...+.++.++|+... ..+++..+++.++++++.+.|.+.++ ++.+..+.. .....+.++ ..+..
T Consensus 266 ---~~~~~-~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~~~~---g~~~~~~~~~~~~~~ 338 (397)
T 2zyj_A 266 ---ADLHT-PMLNQMLVHELLKEGFSERLERVRRVYREKAQAMLHALDREVPKEVRYTRPKG---GMFVWMELPKGLSAE 338 (397)
T ss_dssp ---HHSSC-CHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSEECCCSB---SSEEEEECSTTCCHH
T ss_pred ---hcCCC-CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEccCCc---cEEEEEEcCCCCCHH
Confidence 11233 5555556666666321 45777888888999999999987456 577653322 223334444 23456
Q ss_pred HHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1701 SLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1701 ~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
++...| +||.+++|..|... ....+++||+++.. +.+++++++++|++.
T Consensus 339 ~~~~~l~~~gi~v~~g~~f~~~---------------~~~~~~iRis~~~~-~~~~i~~~~~~l~~~ 389 (397)
T 2zyj_A 339 GLFRRALEENVAFVPGGPFFAN---------------GGGENTLRLSYATL-DREGIAEGVRRLGRA 389 (397)
T ss_dssp HHHHHHHHTTEEEEESGGGCTT---------------SCCTTEEEEECSSS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCEEechHHhcCC---------------CCCCCeEEEEcCCC-CHHHHHHHHHHHHHH
Confidence 676666 89999999877532 01137899999875 899999999999874
|
| >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.9e-21 Score=260.65 Aligned_cols=329 Identities=13% Similarity=0.104 Sum_probs=231.8
Q ss_pred CCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCC---------CcEEEeCCHHHHHHHHHHhhh
Q psy15216 1405 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADP---------REIIWTSGATESNNLAIKGAA 1475 (2602)
Q Consensus 1405 ~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~---------~~iv~t~gaT~al~~al~~l~ 1475 (2602)
.+..+.+++..++ |+....|..+.....+..++++++++++|++. ..+++|+|+|+|+..++.++.
T Consensus 86 ~~~~~~~~~~~~~-----n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~ 160 (486)
T 1js3_A 86 YPAMLADMLCGAI-----GCIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAAR 160 (486)
T ss_dssp HHHHHHHHHHHHH-----CCCCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-----CcCccccccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHH
Confidence 3445666666665 33333455566677788899999999999864 358999999999999998875
Q ss_pred hhhcc-----CCC----------EEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccCCce------
Q psy15216 1476 HFYKK-----RGK----------HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTI------ 1534 (2602)
Q Consensus 1476 ~~~~~-----~gd----------~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~~t~------ 1534 (2602)
...++ .|| .|+++.++|+++...+..+ |++++.++++.++.+|+++|+++|+++++
T Consensus 161 ~~~~~~~~~~~gd~~~~~~~~~~~v~~s~~~h~s~~~~~~~~---G~~v~~v~~d~~~~~d~~~L~~~i~~~~~~g~~p~ 237 (486)
T 1js3_A 161 TKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIG---GVKLKAIPSDGKFAMRASALQEALERDKAAGLIPF 237 (486)
T ss_dssp HHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHHHHHHHHHH---TCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEE
T ss_pred HHHhhhhhccCccchhcccCCCEEEEECCCCcHHHHHHHHhC---CCceEEeecCCCCCCCHHHHHHHHHHHHhCCCCce
Confidence 32111 032 3888999999998888777 99999999988899999999999987764
Q ss_pred EEEEeccccccccccChHHHHHHhhhcCCEEEEecccccCccccc-CCC-----CCccEEEEcccccc-CCCceEEEEEe
Q psy15216 1535 LVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDIN-IQN-----YKVDLMSFSAHKIY-GPKGIGALYIR 1607 (2602)
Q Consensus 1535 lv~l~~~~n~tG~~~~l~~I~~ia~~~gi~vivD~a~~~g~~~~~-l~~-----~~~D~~v~S~~K~~-gp~G~G~l~~~ 1607 (2602)
+|++++++|+||.+.|+++|+++|++||+|+|+|+||+.+....+ ... .++|++++++||++ +|.|+|+++++
T Consensus 238 ~vv~~~~~n~tG~~~~l~~I~~la~~~~~~lhvD~a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~p~~~G~l~~~ 317 (486)
T 1js3_A 238 FVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVK 317 (486)
T ss_dssp EEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEES
T ss_pred EEEEeCCCCCCCCCCCHHHHHHHHHHcCCEEEEehhhHHHHHHCHHHHHHhcCccccCeeEEchhhhcCCCcceEEEEEe
Confidence 999999999999999999999999999999999999987764332 211 25899999999954 57889999998
Q ss_pred cCC--CCccc--cccc-cCCc-----cc--cCC-CCCcchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy15216 1608 RNP--RTRIE--AQIH-GGGH-----EY--GLR-SGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESI 1673 (2602)
Q Consensus 1608 ~~~--~~~l~--~~~~-g~~~-----~~--~~~-~gt~~~~~~~al~~aL~-~~~~~~~~~~~~~~~l~~~l~~~L~~~~ 1673 (2602)
++. .+.+. +.+. +... .. .+. .++... ...++.+++. +...+++++.++..++++++.+.|.+ .
T Consensus 318 ~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~-~~~~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~-~ 395 (486)
T 1js3_A 318 RRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRF-RSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQ-D 395 (486)
T ss_dssp CHHHHHGGGC------------CCSCCCGGGSSSCSCCCC-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-C
T ss_pred CHHHHHHHhcCCchhhCCCcccccCCCCccccCCCCCCch-hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc-C
Confidence 642 23221 1111 1110 00 000 111111 2345556666 34567889999999999999999988 7
Q ss_pred CcEEEeCCCCCCCCceEEEEEecCC--cHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEec-CC
Q psy15216 1674 EEIYINGDMNNRIPHNLNISFNFIE--GESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTI-GR 1748 (2602)
Q Consensus 1674 ~gl~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~-~~ 1748 (2602)
+++.+..++. .....|.++..+ ..++...| +|+.+..+..+. ..+++|+++ ++
T Consensus 396 ~~~~~~~~~~---~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~-------------------~~~~lRi~~~~~ 453 (486)
T 1js3_A 396 PRFEVCAEVT---LGLVCFRLKGSDGLNEALLERINSARKIHLVPCRLR-------------------GQFVLRFAICSR 453 (486)
T ss_dssp TTEEECSCCC---SSEEEEEESSCHHHHHHHHHHHHHHTSCBCEEEEET-------------------TEEEEEEECCCT
T ss_pred CCeEEeCCCc---eeEEEEEecChHHHHHHHHHHHHhcCCEEEEEEEEC-------------------CEEEEEEEeCCC
Confidence 8999876432 345555554321 34555555 454322221111 126899996 66
Q ss_pred CCCHHHHHHHHHHHHHh
Q psy15216 1749 FTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1749 ~~t~edid~li~~L~~~ 1765 (2602)
++|.+||+++++.|++.
T Consensus 454 ~~t~~di~~~~~~l~~~ 470 (486)
T 1js3_A 454 KVESGHVRLAWEHIRGL 470 (486)
T ss_dssp TCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 78999999999999873
|
| >3lvl_A NIFU-like protein; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 3.00A {Escherichia coli} PDB: 2l4x_A 2kqk_A 1q48_A 1r9p_A 1wfz_A | Back alignment and structure |
|---|
Probab=99.88 E-value=2.7e-23 Score=217.06 Aligned_cols=96 Identities=82% Similarity=1.295 Sum_probs=89.6
Q ss_pred hhhhhhhhhhhcCCCCcCcccCCCCcceeeeecCCCCccEEEEEEEEcCCCcEEeeeeeccccchhHhhHHHHHHHHcCC
Q psy15216 1769 MSYSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKTYGCGSAIASSSLVTEWVKGK 1848 (2602)
Q Consensus 1769 ~~y~~~i~dh~~~p~~~g~~~~~~~~~~~~~~~~~~cgd~~~~~~~~~~~~~i~~~~~~~~gc~~~~a~~s~~~~~~~g~ 1848 (2602)
.+|+++|+|||+||||+|.|++++..+++++++||+|||.|+|||+|+++|+|+|++|+++||+++|||+||+||+++||
T Consensus 2 ~~Y~~~Ildh~~~P~n~g~l~~~~~~~~~~~~~np~CGD~i~l~l~v~~~~~I~d~~f~~~GCais~ASaS~~te~i~Gk 81 (129)
T 3lvl_A 2 SAYSEKVIDHYENPRNVGSFDNNDENVGSGMVGAPACGDVMKLQIKVNDEGIIEDARFKTYGCGSAIASSSLVTEWVKGK 81 (129)
T ss_dssp -CCCHHHHHHHHSCSSBSCCCTTCSSEEEEEEECTTTCCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHhCCCCCCCCCCCCcceeEEEecCCCCCCEEEEEEEECCCCeEEEEEEEecCCHHHHHHHHHHHHHHcCC
Confidence 37999999999999999999998887889999999999999999999756899999999999999999999999999999
Q ss_pred Chhhhhcccccchhhh
Q psy15216 1849 TLDEAMSIKNTDIAEE 1864 (2602)
Q Consensus 1849 ~~~~~~~i~~~~i~~~ 1864 (2602)
|++||..++++++.+.
T Consensus 82 t~~ea~~i~~~~i~~~ 97 (129)
T 3lvl_A 82 SLDEAQAIKNTDIAEE 97 (129)
T ss_dssp CHHHHHTCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHH
Confidence 9999999998876654
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.88 E-value=2e-22 Score=267.58 Aligned_cols=336 Identities=11% Similarity=0.028 Sum_probs=230.4
Q ss_pred CCCHHHHHHHHHHHhhhcCC-------CCCCCcchhhhHHHHHHHHHHHHHHHh------CCCCCcEEEeCCHHHHHHHH
Q psy15216 8 PIDPRVVDKMIPYLRVQFGN-------PASRNHIYGWTAEKAIEKARNEVAQLI------YADPREIIWTSGATESNNLA 74 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~~~-------p~~~~~~~~~~~~~~~~~~r~~lA~~~------g~~~~~Iv~t~g~T~al~~~ 74 (2602)
..++.+.+++.+++...+.+ +....+..++......+++|+.+|+++ ++++++|++|+|+|+|++++
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~t~al~~~ 122 (444)
T 3if2_A 43 AKIDAVNELFLETYKALGNDNDTGKANSSAIISMANYSNPQGDSAFIDALVGFFNRHYDWNLTSENIALTNGSQNAFFYL 122 (444)
T ss_dssp CCCHHHHHHHHHHHHHHHSCSCTTCCCCHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHH
T ss_pred CcccchHHHHHHHHHHHHhccccccccchhhhhhhccCCCCCCHHHHHHHHHHHHhhcCCCCCHHHEEEecCcHHHHHHH
Confidence 34567777777777665555 420011223332334567778888777 56788999999999999999
Q ss_pred HHhcccccccCCC--------------EEEEc-CCCCcccHHHHH---HHHhCCcEEEEeccCC-C----CccChHHHHh
Q psy15216 75 IKGAAHFYKKRGK--------------HIITV-QTEHKSVLDSIR---KLENDGFRVTYLKPKN-N----GLITLSQLEE 131 (2602)
Q Consensus 75 ~~~l~~~~~~~gd--------------~Vlv~-~~~~~s~~~~~~---~~~~~G~~v~~v~~~~-~----~~ld~e~l~~ 131 (2602)
+.++. ++|| +|+++ .|+|+++...+. .+...|..++.+++++ + +.+|+++|++
T Consensus 123 ~~~l~----~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~l~~ 198 (444)
T 3if2_A 123 FNLFG----GAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHVEGQHFAAVLPHIDEVTHDGEEGFFKYRVDFEALEN 198 (444)
T ss_dssp HHHSS----EEEECC-------CEEEEEEEESSSSCCGGGTTCCSSSCCEEECCCEEEEEEETTEEEEEEEECCHHHHHT
T ss_pred HHHHh----CCCccccccccccccccceEEEeCCCCccchhhcccccchhhccCceEEecccccccCccccCCCHHHHHH
Confidence 99987 6787 78876 899998865331 2234578888888775 2 3689999999
Q ss_pred h---ccCCceEEEEecccCccccccc---HHHHHHHHHhcCCEEEEecccccccccc-----cCCCCCccEEEecccccc
Q psy15216 132 K---ICSDTILVSVMLVNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQAVGKIDI-----NIQNYKVDLMSFSAHKIY 200 (2602)
Q Consensus 132 ~---i~~~tklv~i~~~~npTG~~~~---l~~I~~la~~~g~~livD~a~a~g~~~~-----dl~~~~~D~~~~S~~K~~ 200 (2602)
+ +++++++|++++|+||||.++| +++|+++|++||+++|+|++|+.+.... .....+.+++++|+||+
T Consensus 199 ~l~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~- 277 (444)
T 3if2_A 199 LPALKEGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLIIDNAYGMPFPNIIYSDAHLNWDNNTILCFSLSKI- 277 (444)
T ss_dssp CHHHHTTCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCSCCCCCCCTTEEEEEESTTT-
T ss_pred HHHhcCCCceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHCCCEEEEECCCCCcccccccccccccCCCCEEEEechhhc-
Confidence 8 7889999999999999999999 7888999999999999999997532211 11223567999999996
Q ss_pred CCCC--cEEEEEecCCCCcccceecCCCccccccccCcchhHHHHHHHHHHH--HHHhHHH-HHHHHHHHHHHHHHHHhh
Q psy15216 201 GPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRL--ARIEMKE-ELKRILFLQKRLYNGLME 275 (2602)
Q Consensus 201 Gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~--~~~~~~~-~~~~~~~l~~~l~~~L~~ 275 (2602)
+++| +||++.++++++.+..... ....+++.....++..+++. ......+ ..+++.++++.+.+.|.+
T Consensus 278 ~~~G~r~G~~~~~~~l~~~~~~~~~-------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 350 (444)
T 3if2_A 278 GLPGMRTGIIVADAKVIEAVSAMNA-------VVNLAPTRFGAAIATPLVANDRIKQLSDNEIKPFYQKQATLAVKLLKQ 350 (444)
T ss_dssp TCGGGCCEEEECCHHHHHHHHHHHH-------HHHSSCCCHHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCceEEEEECHHHHHHHHHHHH-------hccCCCChHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555 8999988776666654321 11223455555555555552 1122222 556667777777777766
Q ss_pred ccC--ceEEeCCCCCCCCceEEEEEcc--cChhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEe
Q psy15216 276 SIE--EIYINGDMNNRIPHNLNISFNF--IEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFT 349 (2602)
Q Consensus 276 ~~~--g~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis 349 (2602)
.++ ++.+..+.. ....++.++. .+..++...| +||.+++|..|..+...++ .....+++||+
T Consensus 351 ~l~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~~---------~~~~~~~iRis 418 (444)
T 3if2_A 351 ALGDYPLMIHKPEG---AIFLWLWFKDLPISTLDLYERLKAKGTLIVPSEYFFPGVDVSD---------YQHAHECIRMS 418 (444)
T ss_dssp HSSSSSEEEECCCB---SSEEEEEETTCSSCHHHHHHHHHHTTEECEEGGGSCTTCCCTT---------CSGGGSEEEEE
T ss_pred hcccCCceEecCCc---cEEEEEEcCCCCCCHHHHHHHHHHCCeEEecchhhcCCCCCcc---------cccCCCeEEEE
Confidence 445 355554432 2345566663 4667777776 7999999998865310000 01123789999
Q ss_pred cCCCCCHHHHHHHHHHHHhh
Q psy15216 350 IGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 350 ~~~~~t~edid~li~~L~~~ 369 (2602)
++. +++++++++++|++.
T Consensus 419 ~~~--~~e~i~~~l~~l~~~ 436 (444)
T 3if2_A 419 IAA--DEQTLIDGIKVIGEV 436 (444)
T ss_dssp SSS--CHHHHHHHHHHHHHH
T ss_pred EeC--CHHHHHHHHHHHHHH
Confidence 986 899999999999864
|
| >2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.2e-23 Score=268.01 Aligned_cols=314 Identities=15% Similarity=0.145 Sum_probs=207.9
Q ss_pred cceEEEEEcCcccEEEEEEECCeEEEEeCCCCCccccEEEEEecCCcEEecHHHHhhhccCCCCchhhhhhhcCCCCCCC
Q psy15216 2032 KCVSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNI 2111 (2602)
Q Consensus 2032 ~~~vvGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~~~~~~vG~~A~~~~~~~p~~~~~~~K~~lg~~~~~~ 2111 (2602)
++.++|||+|||+++++++.++++.+. ..|...+||.+. .+| ...+++.+...+|+++++.. .
T Consensus 12 ~~~~vgiDiGt~~i~~~~~~~~~~~i~--~~g~~~~ps~~~--~~g-----------~i~d~~~~~~~ik~~~~~~~--~ 74 (377)
T 2ych_A 12 RVEALGLEIGASALKLVEVSGNPPALK--ALASRPTPPGLL--MEG-----------MVAEPAALAQEIKELLLEAR--T 74 (377)
T ss_dssp CCCCEEEEECSSEEEEEEEETTTTEEE--EEEEEECCTTSE--ETT-----------EESCHHHHHHHHHHHHHHHT--C
T ss_pred CCceEEEEeCCCeEEEEEEeCCceEEE--EEEeEECCCCcc--cCC-----------CcCCHHHHHHHHHHHHHHcC--C
Confidence 346899999999999999887766552 335555666432 222 34567778888999887621 1
Q ss_pred CCCCCCeeeecCCCceEEEecCceeCHHHHHHHHHHHHHHHHHHhhccccceEEEeeCCCCCHHH---------------
Q psy15216 2112 NTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQ--------------- 2176 (2602)
Q Consensus 2112 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~q--------------- 2176 (2602)
........+... ...........++++++... ++..++++++.++.+++|++| +.+.+
T Consensus 75 ~~~~v~~~i~~~-~~~~~~~~~~~v~~~el~~~----i~~ea~~~~~~~~~~~vid~~--~~~~~~~~~~~~~~~v~~va 147 (377)
T 2ych_A 75 RKRYVVTALSNL-AVILRPIQVPKMPLKEMEEA----VRWEAERYIPFPIDEVVLDFA--PLTPLSEVQEGEQVQVMVAA 147 (377)
T ss_dssp CCCEEEEEECGG-GCEEEEEEEECCCHHHHHHH----HHHHHGGGCSSCC-CEEEEEE--ESSCGGGSCTTSEEEEEEEE
T ss_pred CcceEEEEecCC-cEEEEEEECCCCCHHHHHHH----HHHHHhhcCCCChhHceEEEE--EeCCCCCCCCcceeEEEEEE
Confidence 111111111111 01111111135678887653 455788889999999999998 33332
Q ss_pred -----HHHHHHHHHHcCCceeEeechhHHHHHHhhhcc-CCCCceEEEEEeCCceEEEEEEEEeCCEEEEEEEecCCCCc
Q psy15216 2177 -----RQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDK-NIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLG 2250 (2602)
Q Consensus 2177 -----r~~l~~Aa~~AGl~~~~li~EP~AAAl~y~~~~-~~~~~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lG 2250 (2602)
.+.+++|++.||+++..++.||+|||++|+... ...+..++|+|+||||||+++++. +.+ . ..++..+|
T Consensus 148 ~~~~~v~~~~~~~~~aGl~~~~i~~ep~Aaa~~~~~~~~~~~~~~~~vvDiGggttdi~i~~~--g~~--~-~~~~~~~G 222 (377)
T 2ych_A 148 ARQEAVAGVLEALRGAGLVPVVLDVKPFAGLYPLEARLAEEPDRVFLVLDIGAESTSLVLLRG--DKP--L-AVRVLTLS 222 (377)
T ss_dssp EEHHHHHHHHHHHHHTTCEEEEEEEHHHHTTGGGHHHHHTSTTCEEEEEEECSSCEEEEEEET--TEE--E-EEEEESCS
T ss_pred ecHHHHHHHHHHHHHCCCceEEEecchHHHHHHHHhhcccccCCeEEEEEECCCcEEEEEEEC--CEE--E-EEEeeech
Confidence 389999999999999999999999999986533 233567899999999999999873 332 2 34558999
Q ss_pred hhHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhcccceEEE----EEEecCCceEEEEcCHHHHHHHHHHHHH
Q psy15216 2251 GDDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQSSVKL----NVKLSDKKIVNITIDMKQFFTITQHLVN 2326 (2602)
Q Consensus 2251 G~~~D~~l~~~l~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~~----~i~~~~~~~~~~~itr~~fe~l~~~~~~ 2326 (2602)
|.+||+.|.+.+. .. ...+|++|+.++....... .+++. ....+++|++|++++++.++
T Consensus 223 G~~i~~~i~~~~~-------~~-------~~~aE~~K~~~~~~~~~~~~~~~~i~~~---~~~~~i~~~~~~~~i~~~~~ 285 (377)
T 2ych_A 223 GKDFTEAIARSFN-------LD-------LLAAEEVKRTYGMATLPTEDEELLLDFD---AERERYSPGRIYDAIRPVLV 285 (377)
T ss_dssp HHHHHHHHHHHTT-------CC-------HHHHHHHHHHTC----------------------------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-------CC-------HHHHHHHHhhcccccccccccccccccc---cccccCCHHHHHHHHHHHHH
Confidence 9999999886321 11 4678999999876432111 11121 13467899999999999999
Q ss_pred HHHHHHHHHHHHc--CCCccccceEEEEeCccchHHHHHHHHhhcCCcccCC--------------------CCccchhh
Q psy15216 2327 RTILLSSKALMDA--NLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTS--------------------IDPDKAVV 2384 (2602)
Q Consensus 2327 ~~~~~i~~~l~~~--~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~~~~--------------------~~p~~aVa 2384 (2602)
++.+.|.+.|+.. +.....++.|+|+||+|++|.+++.+++.|+.++... .+|..++|
T Consensus 286 ~i~~~i~~~l~~~~~~~~~~~~~~IvL~GG~s~~p~l~~~l~~~l~~~v~~~~P~~~v~~~~~~~~~~~l~~~~p~~a~a 365 (377)
T 2ych_A 286 ELTQELRRSLEFFRIQLEEASPEVGYLLGGGSKLRGLASLLTDTLGVNLEPVNPWEAVAVDPKRFESEQLQEIGPEFAVA 365 (377)
T ss_dssp HHHHHHHHHHHHHHHHC---CCSEEEEESGGGGSTTHHHHHHHHHTSEEEECCGGGGSBCCTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCCcCEEEEECccccchhHHHHHHHHhCCCeEecCchhhcccCcccCCHHHHHhhhHHHHHH
Confidence 9999999999963 5556689999999999999999999999998654432 13344567
Q ss_pred hHHHHHh
Q psy15216 2385 FGAAIQA 2391 (2602)
Q Consensus 2385 ~GAa~~a 2391 (2602)
.|+|+++
T Consensus 366 ~Glal~~ 372 (377)
T 2ych_A 366 LGLALRG 372 (377)
T ss_dssp HHHHHHH
T ss_pred HHHHHcC
Confidence 7777765
|
| >2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.2e-21 Score=259.32 Aligned_cols=311 Identities=17% Similarity=0.228 Sum_probs=220.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHhCCC--CCcEEEeCCHHHHHHHHHHhhhhhh----ccCC-----C-EEEEcCCCCcchH
Q psy15216 1429 HIYGWTAEKAIEKARNEVAQLIYAD--PREIIWTSGATESNNLAIKGAAHFY----KKRG-----K-HIITVQTEHKSVL 1496 (2602)
Q Consensus 1429 ~~~~~~~~~~~~~lr~~ia~~~g~~--~~~iv~t~gaT~al~~al~~l~~~~----~~~g-----d-~Vlv~~~~~~s~~ 1496 (2602)
|..+.....+..++++++++++|++ +++++||+|+|+|+..++.++.... .++| + +|+++.++|+++.
T Consensus 124 ~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~s~~ 203 (504)
T 2okj_A 124 YEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIK 203 (504)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHH
T ss_pred hhhChHHHHHHHHHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcchHHHH
Confidence 4445556677788889999999997 7789999999999999999885211 0245 6 8999999999998
Q ss_pred HHHHHHHhCCc-EEEEeccCCCCCcChhHHHhhccC------CceEEEEeccccccccccChHHHHHHhhhcCCEEEEec
Q psy15216 1497 DSIRKLENDGF-RVTYLKPKNNGLITLSQLEEKICS------DTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDA 1569 (2602)
Q Consensus 1497 ~~~~~~~~~G~-~v~~v~~~~~~~id~d~l~~~i~~------~t~lv~l~~~~n~tG~~~~l~~I~~ia~~~gi~vivD~ 1569 (2602)
.++..+.. |. +++.++.++++.+|+++|+++|++ +|++|++++++|+||.+.|+++|+++|++||+|+|+|+
T Consensus 204 ~~~~~~g~-g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~l~~I~~la~~~g~~lhvD~ 282 (504)
T 2okj_A 204 KAGAALGF-GTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDA 282 (504)
T ss_dssp HHHHHTTS-CGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCCHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHcCC-CcccEEEEecCCCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEeh
Confidence 88877622 33 899999988899999999999976 58999999999999999999999999999999999999
Q ss_pred ccccCccc-----ccCCCC-CccEEEEccccccC-CCceEEEEEecC-CCCc----cccccccCCcc---------ccCC
Q psy15216 1570 AQAVGKID-----INIQNY-KVDLMSFSAHKIYG-PKGIGALYIRRN-PRTR----IEAQIHGGGHE---------YGLR 1628 (2602)
Q Consensus 1570 a~~~g~~~-----~~l~~~-~~D~~v~S~~K~~g-p~G~G~l~~~~~-~~~~----l~~~~~g~~~~---------~~~~ 1628 (2602)
+|+.+... ..+... ++|++++++||+++ |.|+|+++++++ ++.. ..+...++... ....
T Consensus 283 a~~~~~~~~~~~~~~~~g~~~~D~i~~~~hK~~~~p~~~g~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 362 (504)
T 2okj_A 283 AWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQ 362 (504)
T ss_dssp TTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCSSSCCSCCSSCGGGCCGGGSSC
T ss_pred hhhhHHHhCHhhHhhcCCcccCCEEEECchhhcCCCcceEEEEEECHHHHHHHhcCCCccccCCcccccCcCCcccCCCC
Confidence 99877653 233332 68999999999655 888999999874 3321 22222222110 0001
Q ss_pred CCC-cchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecCC--------
Q psy15216 1629 SGT-LATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIE-------- 1698 (2602)
Q Consensus 1629 ~gt-~~~~~~~al~~aL~-~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~~-------- 1698 (2602)
.+. .....++ +++. +...+++++.++..++++++.+.|.+ .+++.+..+.... ...+.|.+....
T Consensus 363 ~~rr~~~l~~~---a~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~-~~~~~~~~~~~p~-~~~v~f~~~~~~~~~~~~~~ 437 (504)
T 2okj_A 363 CGRHVDIFKFW---LMWKAKGTVGFENQINKCLELAEYLYAKIKN-REEFEMVFNGEPE-HTNVCFWYIPQSLRGVPDSP 437 (504)
T ss_dssp SSCBCCHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CTTEEESSSSCCS-SSCEEEEECCGGGSSCCCCH
T ss_pred CCCCccHHHHH---HHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc-CCCEEEEecCCCC-eEEEEEEEeCccccccccch
Confidence 110 1122222 3333 23467888999999999999999987 7899988631111 223334332110
Q ss_pred ---------cHHHHHhc--CCE-EEccccccCCCCCChhHHHHHcCCCccccCCeEEEecC-CCCCHHHHHHHHHHHHH
Q psy15216 1699 ---------GESLLMAI--KDI-AVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIG-RFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1699 ---------~~~~~~~L--~gI-~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~-~~~t~edid~li~~L~~ 1764 (2602)
...+...| +|+ .+.+.. +.. ..+++|++++ +++|.+||++++++|++
T Consensus 438 ~~~~~~~~~~~~l~~~L~~~G~~~~~~~~-~~~------------------~~~~lRis~~~~~~t~edi~~~~~~l~~ 497 (504)
T 2okj_A 438 QRREKLHKVAPKIKALMMESGTTMVGYQP-QGD------------------KANFFRMVISNPAATQSDIDFLIEEIER 497 (504)
T ss_dssp HHHHHHTTHHHHHHHHHHHHTSCEEEEEE-ETT------------------EEEEEEECCCCTTCCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhCCcEEEEeeE-ECC------------------ceEEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 12344444 453 332111 100 0158999996 89999999999999987
|
| >3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=5.3e-23 Score=265.69 Aligned_cols=328 Identities=15% Similarity=0.101 Sum_probs=226.7
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCC
Q psy15216 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK 87 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd 87 (2602)
+.++.+.+++.+.+...+..+ .+..+++|+.+++++|.+ ++++++|+|+|+++++.++. +++||
T Consensus 13 ~~~~~v~~a~~~~~~~~~~~~-----------~~~~~~l~~~la~~~~~~--~~~~~~sGt~al~~al~~~~---~~~gd 76 (367)
T 3nyt_A 13 RIKDKIDAGIQRVLRHGQYIL-----------GPEVTELEDRLADFVGAK--YCISCANGTDALQIVQMALG---VGPGD 76 (367)
T ss_dssp HHHHHHHHHHHHHHHHCCCSS-----------CHHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHTT---CCTTC
T ss_pred ccCHHHHHHHHHHHhcCCccC-----------ChHHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHhC---CCCcC
Confidence 445677788887776532211 135788999999999976 89999999999999999984 37999
Q ss_pred EEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCC-CccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHhcC
Q psy15216 88 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN-GLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKG 166 (2602)
Q Consensus 88 ~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~-~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~~g 166 (2602)
+|+++.++|+++...+... |+++++++++++ +.+|++++++++++++++|+ ++||||...|+++|.++|++||
T Consensus 77 ~Vi~~~~~~~~~~~~~~~~---G~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~---~~~~~G~~~~~~~i~~la~~~~ 150 (367)
T 3nyt_A 77 EVITPGFTYVATAETVALL---GAKPVYVDIDPRTYNLDPQLLEAAITPRTKAII---PVSLYGQCADFDAINAIASKYG 150 (367)
T ss_dssp EEEEESSSCTHHHHHHHHT---TCEEEEECBCTTTCSBCGGGTGGGCCTTEEEEC---CBCGGGCCCCHHHHHHHHHHTT
T ss_pred EEEECCCccHHHHHHHHHc---CCEEEEEecCCccCCcCHHHHHHhcCcCCcEEE---eeCCccChhhHHHHHHHHHHcC
Confidence 9999999999988877655 999999999875 78999999999999999888 6778999999999999999999
Q ss_pred CEEEEecccccccccccCCCCCc--cEEEecc--ccccCCCC-cEEEEEe-cCCCCcccceecCCCcccccc------cc
Q psy15216 167 VIFHCDAAQAVGKIDINIQNYKV--DLMSFSA--HKIYGPKG-IGALYIR-RNPRTRIEAQIHGGGHEYGLR------SG 234 (2602)
Q Consensus 167 ~~livD~a~a~g~~~~dl~~~~~--D~~~~S~--~K~~Gp~G-~G~l~~~-~~~~~~l~~~~~g~~~~~~~~------~g 234 (2602)
+++|+|++|+.|.. .+....+. |++++|| ||++|+.| .|+++.+ +++.+.+.+....+.. ..+. ..
T Consensus 151 ~~li~D~a~~~g~~-~~~~~~~~~~di~~~Sf~~~K~l~~~g~gg~~~~~~~~l~~~~~~~~~~g~~-~~~~~~~~g~~~ 228 (367)
T 3nyt_A 151 IPVIEDAAQSFGAS-YKGKRSCNLSTVACTSFFPSAPLGCYGDGGAIFTNDDELATAIRQIARHGQD-RRYHHIRVGVNS 228 (367)
T ss_dssp CCBEEECTTTTTCE-ETTEETTSSSSEEEEECCTTSSSCCSSCCEEEEESCHHHHHHHHHHTBTTEE-ETTEECSCCCBC
T ss_pred CEEEEECccccCCe-ECCeeccCCCCEEEEECCCCCcCCCcCceeEEEeCCHHHHHHHHHHHhcCCC-cCceeeccCcCC
Confidence 99999999998764 22222222 8999996 89888755 6777774 4455555443332211 1111 11
Q ss_pred CcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCC--CCCceEEEEEcccChhHHHHHh--
Q psy15216 235 TLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNN--RIPHNLNISFNFIEGESLLMAI-- 310 (2602)
Q Consensus 235 t~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~L-- 310 (2602)
..+....++....+ +.+++..++.+++++++.+.|.+ . ++.+...+.. ..+..+.+.+ .+.+.+...|
T Consensus 229 ~~~~~~aa~~~~~l----~~~~~~~~~~~~~~~~~~~~L~~-~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~L~~ 300 (367)
T 3nyt_A 229 RLDTLQAAILLPKL----EIFEEEIALRQKVAAEYDLSLKQ-V-GIGTPFIEVNNISVYAQYTVRM--DNRESVQASLKA 300 (367)
T ss_dssp CCCHHHHHHHHHHH----HTHHHHHHHHHHHHHHHHHHHHH-T-TCCCCCCCTTEECCCSSEEEEC--SSHHHHHHHHHH
T ss_pred CccHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcc-C-CeeccCCCCCCceeeEEEEEEe--CCHHHHHHHHHH
Confidence 12222222222222 34567778888899999999987 3 4444322221 1222333333 3667777777
Q ss_pred CCeEEcccccCCCCCCChHHH--HHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 311 KDIAVSSGSACTSASLEPSYV--LRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 311 ~gI~v~~g~~~~~~~~~~~~~--~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
+||.++.+... +.+.++.+. ...++..++...+.||++++..+|++|++++++.|++
T Consensus 301 ~GI~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~~~~t~~~i~~v~~~~~~ 359 (367)
T 3nyt_A 301 AGVPTAVHYPI-PLNKQPAVADEKAKLPVGDKAATQVMSLPMHPYLDTASIKIICAALTN 359 (367)
T ss_dssp HTCCCBCSCSS-CGGGSGGGCCTTCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHC
T ss_pred CCCceeccCCC-ccccChhhhccCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHH
Confidence 69988766421 112222221 1111122233347899999999999999999999995
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-21 Score=259.07 Aligned_cols=316 Identities=15% Similarity=0.097 Sum_probs=233.0
Q ss_pred CCHHHHHHHHHHHhhc----cCCCCCccchhHHHHHHHHHHHHHHHHHHh----CC-CCCcEEEeCCHHHHHHHHHHhhh
Q psy15216 1405 IDPRVVDKMIPYLRVQ----FGNPASRNHIYGWTAEKAIEKARNEVAQLI----YA-DPREIIWTSGATESNNLAIKGAA 1475 (2602)
Q Consensus 1405 ~~~~v~eal~~~l~~~----~~np~~~~~~~~~~~~~~~~~lr~~ia~~~----g~-~~~~iv~t~gaT~al~~al~~l~ 1475 (2602)
+++.+.+++.+.++.. ..++.. ....++|+++++++ |. ++++|++|+|+++|+..++.++.
T Consensus 92 p~~~v~~a~~~~l~~~~~~~~~Y~~~----------~g~~~lr~~ia~~~~~~~g~~~~~~v~~t~G~~~al~~~~~~l~ 161 (448)
T 3aow_A 92 PKEIIRDILVEIMEKYADKALQYGTT----------KGFTPLRETLMKWLGKRYGISQDNDIMITSGSQQALDLIGRVFL 161 (448)
T ss_dssp CHHHHHHHHHHHHHHSHHHHHSCCCT----------TCCHHHHHHHHHHHHHHHCCCTTSEEEEESSHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhhhHHHhCCCCC----------CCcHHHHHHHHHHHHHhcCcCChhhEEEeCcHHHHHHHHHHHHc
Confidence 4567888888877642 122221 12456777887777 88 77899999999999999999987
Q ss_pred hhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhcc----C--CceEE-EEeccccccccc
Q psy15216 1476 HFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKIC----S--DTILV-SVMLVNNEIGVI 1548 (2602)
Q Consensus 1476 ~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~----~--~t~lv-~l~~~~n~tG~~ 1548 (2602)
++||+|+++.|+|+++...+.. .|++++.++.++++ +|+++|+++++ + ++++| ++++++||||.+
T Consensus 162 ----~~Gd~Vlv~~p~y~~~~~~~~~---~g~~~~~v~~~~~g-~d~~~L~~~l~~~~~~~~~~k~v~~~~~~~NPtG~~ 233 (448)
T 3aow_A 162 ----NPGDIVVVEAPTYLAALQAFNF---YEPQYIQIPLDDEG-MKVEILEEKLKELKSQGKKVKVVYTVPTFQNPAGVT 233 (448)
T ss_dssp ----CTTCEEEEEESCCHHHHHHHHT---TCCEEEEEEEETTE-ECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCC
T ss_pred ----CCCCEEEEeCCChHHHHHHHHH---cCCEEEEeccCCCC-CCHHHHHHHHhhhhccCCCCeEEEECCCCCCCcCCC
Confidence 8999999999999998766554 49999999987665 99999999997 6 78987 578999999999
Q ss_pred cC---hHHHHHHhhhcCCEEEEecccccCcc----cc---cCCCCCccEEEEccccccCCCc--eEEEEEecCCCCcccc
Q psy15216 1549 QP---ILEIGELCRSKGVIFHCDAAQAVGKI----DI---NIQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEA 1616 (2602)
Q Consensus 1549 ~~---l~~I~~ia~~~gi~vivD~a~~~g~~----~~---~l~~~~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~ 1616 (2602)
+| +++|.++|++||+++|+|++|+.... .. .+...+.++++.|++|.+| +| +||+++++++++.+..
T Consensus 234 ~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~~~~~~~~~~~vi~~~S~SK~~~-~GlriG~v~~~~~l~~~l~~ 312 (448)
T 3aow_A 234 MNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALDNEGRVIYLGTFSKILA-PGFRIGWMVGDPGIIRKMEI 312 (448)
T ss_dssp CCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCCCTGGGCTTSCEEEEEESTTTTC-GGGCCEEEEECHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHhcCCCCCEEEEccchhhcc-ccccEEEEEeCHHHHHHHHH
Confidence 98 56899999999999999999976432 11 2222345788999999888 67 7999999877666544
Q ss_pred ccccCCccccCCCCCcchhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhcCC-cEEEeCCCCCCCCceEEEE
Q psy15216 1617 QIHGGGHEYGLRSGTLATHQIVGMGEAFRL--ARIEMKEELKRILFLQKRLYNGLMESIE-EIYINGDMNNRIPHNLNIS 1693 (2602)
Q Consensus 1617 ~~~g~~~~~~~~~gt~~~~~~~al~~aL~~--~~~~~~~~~~~~~~l~~~l~~~L~~~~~-gl~i~~~~~~~~~~~~~~~ 1693 (2602)
.... . ..+++...+.++.++|+. ....++..++++.++++++.+.|.+.+| ++.+..+.. .....+.
T Consensus 313 ~~~~------~-~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~p~~---g~~~~v~ 382 (448)
T 3aow_A 313 AKQS------T-DLCTNVFGQVVAWRYVDGGYLEKHIPEIRKFYKPRRDAMLEALEEFMPEGVKWTKPEG---GMFIWVT 382 (448)
T ss_dssp HHHH------H-HSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEECCCSB---SSEEEEE
T ss_pred HHHH------h-cCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEeCCCc---cEEEEEE
Confidence 3211 1 123455666666677763 2455778888888999999999987456 577654322 2233344
Q ss_pred Eec-CCcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1694 FNF-IEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1694 ~~~-~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
++. .+..++...| +||.+.+|..|... ....+++||+++.. +.+++++++++|++.
T Consensus 383 ~~~~~~~~~l~~~l~~~gV~v~pg~~f~~~---------------~~~~~~iRls~~~~-~~e~i~~~~~~L~~~ 441 (448)
T 3aow_A 383 LPDGIDSKKMLERAIKKGVAYVPGEAFYAH---------------RDVKNTMRLNFTYV-DEDKIMEGIKRLAET 441 (448)
T ss_dssp CSTTCCHHHHHHHHHHTTEECEEGGGGSTT---------------CCCCSEEEEECSSS-CTHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHCCcEEEcchhhcCC---------------CCCCCEEEEEeCCC-CHHHHHHHHHHHHHH
Confidence 442 3456676666 79999999877542 01137899999864 789999999999974
|
| >3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.88 E-value=5.2e-22 Score=259.90 Aligned_cols=318 Identities=16% Similarity=0.150 Sum_probs=233.5
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCC
Q psy15216 1404 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK 1483 (2602)
Q Consensus 1404 ~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd 1483 (2602)
..++.+.+++.+.+... +++.. .+.+.+.......++|+++++++|.+ +.++++++|+|+..++.++. ++||
T Consensus 57 ~~~~~v~~a~~~~~~~~-~~~~~-~~~~~~g~~~~~~~l~~~la~~~~~~--~~i~~~sGt~a~~~~l~~~~----~~gd 128 (399)
T 3tqx_A 57 ADHPALIKTAQTVVEQY-GFGMA-SVRFICGTQTIHKELEKDISEFLGTD--DTILYSSCFDANGGLFETLL----GPED 128 (399)
T ss_dssp TTCHHHHHHHHHHHHHH-CSCCC-SCCCCCCCBHHHHHHHHHHHHHHTCS--EEEEESCHHHHHHTTHHHHC----CTTC
T ss_pred cCCHHHHHHHHHHHHHh-CCCCC-CcCccccCchHHHHHHHHHHHHHCCC--cEEEECchHHHHHHHHHHhc----CCCC
Confidence 34788999999988763 22211 11111222346789999999999975 45555566889999888876 8999
Q ss_pred EEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccC------CceEEEEeccccccccccChHHHHHH
Q psy15216 1484 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS------DTILVSVMLVNNEIGVIQPILEIGEL 1557 (2602)
Q Consensus 1484 ~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~------~t~lv~l~~~~n~tG~~~~l~~I~~i 1557 (2602)
+|+++.+.|+++...+.. .|++++.++. +|++++++++++ ++++|++++++||||.++|+++|.++
T Consensus 129 ~v~~~~~~~~~~~~~~~~---~g~~~~~~~~-----~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l 200 (399)
T 3tqx_A 129 AIISDELNHASIIDGIRL---CKAQRYRYKN-----NAMGDLEAKLKEADEKGARFKLIATDGVFSMDGIIADLKSICDL 200 (399)
T ss_dssp EEEEETTCCHHHHHHHHS---CCSEEEEECT-----TCTTHHHHHHHHHHTTTCSSEEEEEESEETTTTEECCHHHHHHH
T ss_pred EEEECCcccHHHHHHHHH---cCCceeEeCC-----CCHHHHHHHHHhhhccCCCceEEEEeCCCCCCCCcCCHHHHHHH
Confidence 999999999998766544 4999998875 478899998875 89999999999999999999999999
Q ss_pred hhhcCCEEEEecccccCcccc------cCCC--CCccEEEEccccccC-CCceEEEEEecCCCCccccccccCCccccCC
Q psy15216 1558 CRSKGVIFHCDAAQAVGKIDI------NIQN--YKVDLMSFSAHKIYG-PKGIGALYIRRNPRTRIEAQIHGGGHEYGLR 1628 (2602)
Q Consensus 1558 a~~~gi~vivD~a~~~g~~~~------~l~~--~~~D~~v~S~~K~~g-p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~ 1628 (2602)
|++||+++|+|++|+.+.... +... .++|+++.|+||.+| ++| ||++.++++++.+...... ...
T Consensus 201 ~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g-G~~~~~~~~~~~~~~~~~~-----~~~ 274 (399)
T 3tqx_A 201 ADKYNALVMVDDSHAVGFIGENGRGTPEYCGVADRVDILTGTLGKALGGASG-GYTSGHKEIIEWLRNRSRP-----YLF 274 (399)
T ss_dssp HHHTTCEEEEECTTTTTTSSTTSCCHHHHHTCTTCCSEEEEESSSSSCSSCC-EEEEECHHHHHHHHHHCHH-----HHS
T ss_pred HHHcCCEEEEECCccccccCCCCCchHHhhCCCCCCcEEEecchHhcccCce-EEEEcCHHHHHHHHHhCcc-----eec
Confidence 999999999999997654321 1111 257999999999766 988 9999998766655432110 112
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEec-CCcHHHHHhc-
Q psy15216 1629 SGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGESLLMAI- 1706 (2602)
Q Consensus 1629 ~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~L- 1706 (2602)
.++.+...+.++.++++....+.++.++++.++++++.+.|.+. ++.+..+ . ..+..+.++. .+..++...|
T Consensus 275 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~-~---~~~~~~~~~~~~~~~~~~~~l~ 348 (399)
T 3tqx_A 275 SNTVAPVIVATSLKVLELLKTEGPQLRKQLQENSRYFRAGMEKL--GFQLVPG-N---HPIIPVMLGDAQLATNMADHLL 348 (399)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH--TCCBCCC-S---SSEEEEEEECHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHc--CCCcCCC-C---CCEEEEEeCCHHHHHHHHHHHH
Confidence 45677777777778888654567889999999999999999883 5554422 1 2233344443 2345666655
Q ss_pred -CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1707 -KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1707 -~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
+||.++++..+..+ ...+++|++++.++|.+++++++++|++.
T Consensus 349 ~~gi~v~~~~~~~~~----------------~~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 392 (399)
T 3tqx_A 349 QEGIYVVGFSYPVVP----------------MGKARIRVQMSAVHTQQQLDRAIEAFGQV 392 (399)
T ss_dssp HTTEECCEECTTTSC----------------TTCEEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred HCCCEEeeeCCCCCC----------------CCCceEEEEeecCCCHHHHHHHHHHHHHH
Confidence 89999876433211 12368999999999999999999999974
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} | Back alignment and structure |
|---|
Probab=99.88 E-value=1e-21 Score=261.14 Aligned_cols=321 Identities=16% Similarity=0.113 Sum_probs=230.3
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHh----CCCCCcEEEeCCHHHHHHHHHHhcccccc
Q psy15216 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI----YADPREIIWTSGATESNNLAIKGAAHFYK 83 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~----g~~~~~Iv~t~g~T~al~~~~~~l~~~~~ 83 (2602)
+.|+.+.+++.+.+.....++.. +. +.......++|+++++++ ++++++|++++|+++++.++ .++.
T Consensus 82 ~~~~~v~~a~~~~~~~~~~~~~~--~~--y~~~~g~~~lr~~ia~~~~~g~~~~~~~i~~t~G~~~al~~~-~~l~---- 152 (449)
T 3qgu_A 82 PLPKYIADAMAKAAAGLATREGY--SG--YGAEQGQGALREAVASTFYGHAGRAADEIFISDGSKCDIARI-QMMF---- 152 (449)
T ss_dssp CCCHHHHHHHHHHHHGGGGSCCC--CC--STTTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCHHHHHHHH-HHHH----
T ss_pred CCCHHHHHHHHHHHHhhccccCC--CC--CCCCCCcHHHHHHHHHHHHcCCCCCHHHEEEccCHHHHHHHH-HHHh----
Confidence 67899999999988754322211 11 111123577889999998 77888999999999999998 7776
Q ss_pred cCCCEEEEcCCCCcccHHHHHHHHhCCcE----------EEEeccCCCC--ccChHHHHhhccCCceEEEEecccCcccc
Q psy15216 84 KRGKHIITVQTEHKSVLDSIRKLENDGFR----------VTYLKPKNNG--LITLSQLEEKICSDTILVSVMLVNNEIGV 151 (2602)
Q Consensus 84 ~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~----------v~~v~~~~~~--~ld~e~l~~~i~~~tklv~i~~~~npTG~ 151 (2602)
++||+|+++.|.|+++...+... |++ ++.++.++.+ ..|++++ +++++|++++|+||||.
T Consensus 153 ~~gd~Vl~~~p~~~~~~~~~~~~---g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~l~~p~NPtG~ 224 (449)
T 3qgu_A 153 GSKPTVAVQDPSYPVYVDTSVMM---GMTGDHNGTGFDGIEYMVCNPDNHFFPDLSKA-----KRTDIIFFCSPNNPTGA 224 (449)
T ss_dssp CSSSCEEEEESCCTHHHHHHHHH---TCSCCBCSSSBTTEEEEECCGGGTTCCCGGGC-----CCCSEEEEESSCTTTCC
T ss_pred CCCCEEEEcCCCChhHHHHHHHc---CCcccccccccceeEEEecccccCCcCChhHc-----CCCCEEEEeCCCCCCCC
Confidence 79999999999999998888777 776 8888877543 3444322 68999999999999999
Q ss_pred ccc---HHHHHHHHHhcCCEEEEeccccccc----ccccCCC----CCccEEEeccccccCCCC--cEEEEEecCCCCc-
Q psy15216 152 IQP---ILEIGELCRSKGVIFHCDAAQAVGK----IDINIQN----YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTR- 217 (2602)
Q Consensus 152 ~~~---l~~I~~la~~~g~~livD~a~a~g~----~~~dl~~----~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~- 217 (2602)
++| +++|+++|++||+++|+|++|+... .+..+.. .+.++++.|+||.+|++| +||+++++++++.
T Consensus 225 ~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~ 304 (449)
T 3qgu_A 225 AATRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPGADEVAIETCSFSKYAGFTGVRLGWTVVPKALKYAN 304 (449)
T ss_dssp CCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECSGGGTCTTCCCEEEECCTTCBCTT
T ss_pred cCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHhhccCCCCcEEEEecchhhcCCccceeEEEecCHHHHhhh
Confidence 998 6678888999999999999997632 2222222 245689999999988777 8999999887763
Q ss_pred ccceecCCCccccccccCcchhHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEE
Q psy15216 218 IEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRL-ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNI 296 (2602)
Q Consensus 218 l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~-~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~ 296 (2602)
..+....+........++++.+...++.+++.. ...+.++..+++.++++++.+.|.+ . |+.+..+.. ..++.+
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~---~~~~~~ 379 (449)
T 3qgu_A 305 GEPVHADWNRVMTTCFNGASNIVQAGGLACLQPEGLKEMNAMIKFYKENAQILKTTFTE-M-GFSVYGGDD---APYIWV 379 (449)
T ss_dssp SCBHHHHHHHHHHHSCCCCCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHH-T-TCCEEESSS---SSEEEE
T ss_pred hhhHHHHHHHHhhcccCCCCHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHH-C-CCeeeCCCC---eeEEEE
Confidence 000000000001112335666666666667653 3356788899999999999999988 3 776664432 234445
Q ss_pred EEcccChhHHHHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 297 SFNFIEGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 297 ~~~~~~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
.++..+..++...| +||.+++|..|.+. ..++|||++. .+++++++++++|++.
T Consensus 380 ~~~~~~~~~~~~~l~~~~gI~v~pg~~f~~~-----------------~~~~iRis~~--~~~e~i~~~l~~l~~~ 436 (449)
T 3qgu_A 380 GFPGKPSWDVFAEILERCNIVTTPGSGYGPA-----------------GEGFVRASAF--GSRENILEAVRRFKEA 436 (449)
T ss_dssp ECTTSCHHHHHHHHHHHHCEECEEGGGGCGG-----------------GTTEEEEECC--SCHHHHHHHHHHHHHH
T ss_pred ECCCCCHHHHHHHHHHHCCEEEecchHhCCC-----------------CCCeEEEEec--CCHHHHHHHHHHHHHH
Confidence 55544566777665 49999999877542 1389999965 4999999999999863
|
| >1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=7.3e-22 Score=254.46 Aligned_cols=319 Identities=17% Similarity=0.190 Sum_probs=232.4
Q ss_pred eeeccC-CCCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHh
Q psy15216 1395 NIVFKD-ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKG 1473 (2602)
Q Consensus 1395 ~v~L~~-~~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~ 1473 (2602)
.++++. ...+.++.+.+++.+.+... .+.. ...+..+++++++++++|++++++++|+|+|+|++.++.+
T Consensus 15 ~i~l~~~~~~~~~~~v~~a~~~~~~~~--~~~~-------g~~~~~~~~~~~l~~~~g~~~~~v~~~~g~t~a~~~~~~~ 85 (359)
T 1svv_A 15 PYSFVNDYSVGMHPKILDLMARDNMTQ--HAGY-------GQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSL 85 (359)
T ss_dssp CEECSCSCSSCCCHHHHHHHHHHTTCC--CCST-------TCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHH
T ss_pred eEEecCCCcCCCCHHHHHHHHHHHhhc--cccc-------cccHHHHHHHHHHHHHhCCCCccEEEeCCchHHHHHHHHH
Confidence 567753 33577889999999887531 1111 1234678899999999999888999999999999999999
Q ss_pred hhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccCC-------ceEEEEeccccccc
Q psy15216 1474 AAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSD-------TILVSVMLVNNEIG 1546 (2602)
Q Consensus 1474 l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~~-------t~lv~l~~~~n~tG 1546 (2602)
+. ++||+|++++++|+++... ..+...|++++.++.+ ++.+|+++|+++++++ +++|+++++ ||||
T Consensus 86 ~~----~~gd~vl~~~~~~~~~~~~-~~~~~~g~~~~~v~~~-~~~~d~~~l~~~l~~~~~~~~~~~~~v~~~~~-~ptG 158 (359)
T 1svv_A 86 AL----RPWEAVIATQLGHISTHET-GAIEATGHKVVTAPCP-DGKLRVADIESALHENRSEHMVIPKLVYISNT-TEVG 158 (359)
T ss_dssp HC----CTTEEEEEETTSHHHHSST-THHHHTTCCEEEECCT-TSCCCHHHHHHHHHHSCSTTSCEEEEEEEESS-CTTS
T ss_pred Hh----CCCCEEEEcccchHHHHHH-HHHhcCCCeeEEEeCC-CCeecHHHHHHHHHHHHhccCCCceEEEEEcC-CCCc
Confidence 87 7999999999999998663 1233459999999976 6789999999999876 899999999 7999
Q ss_pred cccC---hHHHHHHhhhcCCEEEEeccc---ccCcccccCCC----CCccEEEEccccccCCCceEEEEEecCCCCcccc
Q psy15216 1547 VIQP---ILEIGELCRSKGVIFHCDAAQ---AVGKIDINIQN----YKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEA 1616 (2602)
Q Consensus 1547 ~~~~---l~~I~~ia~~~gi~vivD~a~---~~g~~~~~l~~----~~~D~~v~S~~K~~gp~G~G~l~~~~~~~~~l~~ 1616 (2602)
.++| +++|.++|++||+++|+|++| +.|..+.+... ...|++++|+||+++|.|+|++++++++++.+.+
T Consensus 159 ~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~g~~~~~g~l~~~~~~~~~~~~ 238 (359)
T 1svv_A 159 TQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAGGMFGEALIILNDALKPNARH 238 (359)
T ss_dssp CCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTTCSSCEEEEECSGGGCTTHHH
T ss_pred eecCHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCcchhhhhhhhcCCEEEEecccCCCCCceEEEEEcccHHHHHHH
Confidence 9999 889999999999999999999 55655443332 3578999999999888889999999888887765
Q ss_pred ccccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEec
Q psy15216 1617 QIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF 1696 (2602)
Q Consensus 1617 ~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~ 1696 (2602)
....++. .+ ..+.....++..++. ..++++..+++.++++++.+.| + .+++.+..+.. .....+.++
T Consensus 239 ~~~~~~~--~~---~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~l~~~L-~-~~~~~~~~~~~---~~~~~~~~~- 305 (359)
T 1svv_A 239 LIKQRGA--LM---AKGWLLGIQFEVLMK--DNLFFELGAHSNKMAAILKAGL-E-ACGIRLAWPSA---SNQLFPILE- 305 (359)
T ss_dssp HHHHTTC--CC---TTTHHHHHHHHHHTS--TTHHHHHHHHHHHHHHHHHHHH-H-HTTCCBSSCCS---SSEECBEEE-
T ss_pred HHhcCCc--cc---ccchhhHHHHHHHHh--hhhHHHHHHHHHHHHHHHHHHh-c-cCCeEEccCCc---cceEEEEcC-
Confidence 4211111 00 111222222322232 1345778889999999999999 4 46776654322 122222222
Q ss_pred CCcHHHHHhc--C-CEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1697 IEGESLLMAI--K-DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1697 ~~~~~~~~~L--~-gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
.++...| + ||.+. +.. . ...+++|++++..++.+++++++++|++.
T Consensus 306 ---~~~~~~l~~~~gi~v~-~~~--~-----------------~~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 354 (359)
T 1svv_A 306 ---NTMIAELNNDFDMYTV-EPL--K-----------------DGTCIMRLCTSWATEEKECHRFVEVLKRL 354 (359)
T ss_dssp ---HHHHHHHTTTEECEEE-EEE--T-----------------TTEEEEEEECCTTCCHHHHHHHHHHHHHC
T ss_pred ---HHHHHHHHHhcCEEEE-ecc--c-----------------CCCceEEEEccCcCCHHHHHHHHHHHHHH
Confidence 4566655 5 78772 110 0 01278999999889999999999999873
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=7.4e-22 Score=255.99 Aligned_cols=288 Identities=16% Similarity=0.139 Sum_probs=221.6
Q ss_pred HHHHHHHHHHHh-CCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCC-
Q psy15216 1439 IEKARNEVAQLI-YADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN- 1516 (2602)
Q Consensus 1439 ~~~lr~~ia~~~-g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~- 1516 (2602)
..++|+.+++++ +++++++++|+|+|+|+..++.++. ++||+|+++.+.|+++....... |++++.++.++
T Consensus 65 ~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~l~----~~gd~Vl~~~~~~~~~~~~~~~~---g~~~~~v~~~~~ 137 (375)
T 3op7_A 65 SPAFKKSVSQLYTGVKPEQILQTNGATGANLLVLYSLI----EPGDHVISLYPTYQQLYDIPKSL---GAEVDLWQIEEE 137 (375)
T ss_dssp CHHHHHHHHTTSSSCCGGGEEEESHHHHHHHHHHHHHC----CTTCEEEEEESSCTHHHHHHHHT---TCEEEEEEEEGG
T ss_pred hHHHHHHHHHHhccCChhhEEEcCChHHHHHHHHHHhc----CCCCEEEEeCCCchhHHHHHHHc---CCEEEEEecccc
Confidence 467899999998 5688899999999999999999987 89999999999999987665544 99999998864
Q ss_pred -CCCcChhHHHhhccCCceEEEEeccccccccccC---hHHHHHHhhhcCCEEEEecccccCccc-c-c-CCCCCccEEE
Q psy15216 1517 -NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQAVGKID-I-N-IQNYKVDLMS 1589 (2602)
Q Consensus 1517 -~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~---l~~I~~ia~~~gi~vivD~a~~~g~~~-~-~-l~~~~~D~~v 1589 (2602)
++.+|+++|++++++++++|++++|+||||.++| +++|.++|++||+++|+|++|+..... . . ....+.++++
T Consensus 138 ~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~ 217 (375)
T 3op7_A 138 NGWLPDLEKLRQLIRPTTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSDEVYRSFSELDVPSIIEVYDKGIAV 217 (375)
T ss_dssp GTTEECHHHHHHHCCTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECCSCCCSSSCCCCHHHHCTTEEEE
T ss_pred CCCCCCHHHHHHhhccCCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccccccccCCCchhhhcCCEEEE
Confidence 4558999999999999999999999999999999 999999999999999999998764321 0 0 1113456888
Q ss_pred EccccccCCCc--eEEEEEecCCCCccccccccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15216 1590 FSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYN 1667 (2602)
Q Consensus 1590 ~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~ 1667 (2602)
.|+||.+|++| +|++++++++++.+..... ....+.+.....++..+++.....+++.++++.++++++.+
T Consensus 218 ~s~sK~~~~~G~r~G~v~~~~~l~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 290 (375)
T 3op7_A 218 NSLSKTYSLPGIRIGWVAANHQVTDILRDYRD-------YTMICAGVFDDLVAQLALAHYQEILERNRHILEENLAILDQ 290 (375)
T ss_dssp EESSSSSSCGGGCCEEEECCHHHHHHHTTTGG-------GTTSCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEChhhcCCcccceEEEEeCHHHHHHHHHHHh-------hhccCCCcHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 99999888667 6999998776665543321 11234455555556567775555577788888999999999
Q ss_pred HHhhcCCcEEEeCCCCCCCCceEEEEEec-CCcHHHHHhc---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEE
Q psy15216 1668 GLMESIEEIYINGDMNNRIPHNLNISFNF-IEGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIR 1743 (2602)
Q Consensus 1668 ~L~~~~~gl~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iR 1743 (2602)
.|.+ .+++.+..+... ....+.++. .+..++...+ +||.+++|..|... +++|
T Consensus 291 ~l~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~-------------------~~iR 347 (375)
T 3op7_A 291 WIEE-EPLVSYIRPAVV---STSFVKIAVDMPMEDFCLQLLQEHGVLLVPGNRFERD-------------------GYVR 347 (375)
T ss_dssp HHHH-CTTEEECCCSSS---SCEEEEECCSSCHHHHHHHHHHHHCEECEEGGGGTCT-------------------TEEE
T ss_pred HHhh-CCCceEecCCCe---EEEeEEcCCCCCHHHHHHHHHHhCCEEEeChhhhCCC-------------------CeEE
Confidence 9987 678887644322 233444442 3455665554 69999998877543 7999
Q ss_pred EecCCCCCHHHHHHHHHHHHHh
Q psy15216 1744 FTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1744 ls~~~~~t~edid~li~~L~~~ 1765 (2602)
++++. +.+++++++++|++.
T Consensus 348 i~~~~--~~~~i~~~l~~l~~~ 367 (375)
T 3op7_A 348 LGFAC--EQETLIKGLEKLSQF 367 (375)
T ss_dssp ECCCS--CHHHHHHHHHHHHHH
T ss_pred EEecC--CHHHHHHHHHHHHHH
Confidence 99885 458999999999873
|
| >3lvl_A NIFU-like protein; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 3.00A {Escherichia coli} PDB: 2l4x_A 2kqk_A 1q48_A 1r9p_A 1wfz_A | Back alignment and structure |
|---|
Probab=99.88 E-value=3.3e-23 Score=216.34 Aligned_cols=96 Identities=82% Similarity=1.295 Sum_probs=89.3
Q ss_pred hhhhHhhhhcccCCCCCCCCCCCCCcceeeeeCCCCcccEEEEEEEEcCCCceEeeeeeccccchhHhhHHHHHHHHcCC
Q psy15216 373 MSYSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKTYGCGSAIASSSLVTEWVKGK 452 (2602)
Q Consensus 373 ~~y~~~~~~hy~~p~n~g~~~~~~~~~~~~~~~~~~cgd~~~~~~~~~~~~~i~~~~~~~~gc~~~~a~~s~~~~~~~g~ 452 (2602)
.+|+++++|||+||||+|.|++++..+++|+++||+|||.|+|+|+|+++|+|+|++|+|+||+++|||||+++|+++||
T Consensus 2 ~~Y~~~Ildh~~~P~n~g~l~~~~~~~~~~~~~np~CGD~i~l~l~v~~~~~I~d~~f~~~GCais~ASaS~~te~i~Gk 81 (129)
T 3lvl_A 2 SAYSEKVIDHYENPRNVGSFDNNDENVGSGMVGAPACGDVMKLQIKVNDEGIIEDARFKTYGCGSAIASSSLVTEWVKGK 81 (129)
T ss_dssp -CCCHHHHHHHHSCSSBSCCCTTCSSEEEEEEECTTTCCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHhCCCCCCCCCCCCcceeEEEecCCCCCCEEEEEEEECCCCeEEEEEEEecCCHHHHHHHHHHHHHHcCC
Confidence 57999999999999999999998877789999999999999999999756899999999999999999999999999999
Q ss_pred Chhhhhhccccchhhh
Q psy15216 453 TLDEAMSIKNTDIAEE 468 (2602)
Q Consensus 453 ~~~e~~~i~~~~i~~~ 468 (2602)
|++||+.++++++.+.
T Consensus 82 t~~ea~~i~~~~i~~~ 97 (129)
T 3lvl_A 82 SLDEAQAIKNTDIAEE 97 (129)
T ss_dssp CHHHHHTCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHH
Confidence 9999999998776544
|
| >1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4 | Back alignment and structure |
|---|
Probab=99.88 E-value=9.6e-22 Score=257.43 Aligned_cols=315 Identities=13% Similarity=0.157 Sum_probs=232.9
Q ss_pred CCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCE
Q psy15216 1405 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKH 1484 (2602)
Q Consensus 1405 ~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~ 1484 (2602)
.++.+.+++.+.++.. +.++. .+.+.+.......++|+++++++|++ +.++++++|+|+..++.++. ++||+
T Consensus 60 ~~~~v~~a~~~~~~~~-~~~~~-~~~~~~g~~~~~~~l~~~la~~~g~~--~~i~~~sGs~a~~~~~~~~~----~~gd~ 131 (401)
T 1fc4_A 60 NHPDLIAAAKAGMDSH-GFGMA-SVRFICGTQDSHKELEQKLAAFLGME--DAILYSSCFDANGGLFETLL----GAEDA 131 (401)
T ss_dssp TCHHHHHHHHHHHHHH-CSCCC-SCHHHHCCBHHHHHHHHHHHHHHTCS--EEEEESCHHHHHHTTHHHHC----CTTCE
T ss_pred CCHHHHHHHHHHHHHh-CCCCC-CCCcccCCcHHHHHHHHHHHHHhCCC--cEEEeCChHHHHHHHHHHHc----CCCCE
Confidence 4789999999988652 22221 12222212456789999999999987 44556667889999888876 89999
Q ss_pred EEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccC------CceEEEEeccccccccccChHHHHHHh
Q psy15216 1485 IITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS------DTILVSVMLVNNEIGVIQPILEIGELC 1558 (2602)
Q Consensus 1485 Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~------~t~lv~l~~~~n~tG~~~~l~~I~~ia 1558 (2602)
|+++.+.|+++...+ ...|++++.++. +|+++|++++++ ++++|++++++||||.++|+++|.++|
T Consensus 132 v~~~~~~~~~~~~~~---~~~g~~~~~~~~-----~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~~~~i~~l~ 203 (401)
T 1fc4_A 132 IISDALNHASIIDGV---RLCKAKRYRYAN-----NDMQELEARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDLA 203 (401)
T ss_dssp EEEETTCCHHHHHHH---HTSCSEEEEECT-----TCHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECCHHHHHHHH
T ss_pred EEEcchhHHHHHHHH---HHcCCceEEECC-----CCHHHHHHHHHHhhccCCCceEEEEeCCcCCCCCCCCHHHHHHHH
Confidence 999999998876654 445999988863 588999999875 799999999999999999999999999
Q ss_pred hhcCCEEEEecccccCcc-c--------ccCCCCCccEEEEcccccc-CCCceEEEEEecCCCCccccccccCCccccCC
Q psy15216 1559 RSKGVIFHCDAAQAVGKI-D--------INIQNYKVDLMSFSAHKIY-GPKGIGALYIRRNPRTRIEAQIHGGGHEYGLR 1628 (2602)
Q Consensus 1559 ~~~gi~vivD~a~~~g~~-~--------~~l~~~~~D~~v~S~~K~~-gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~ 1628 (2602)
++||+++|+|++|+.+.. + +++.. +.|+++.|+||.+ |+.| |++++++++++.+...... ..+
T Consensus 204 ~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~-~~di~~~s~sK~~~~~~g-G~~~~~~~~~~~l~~~~~~----~~~- 276 (401)
T 1fc4_A 204 DKYDALVMVDDSHAVGFVGENGRGSHEYCDVMG-RVDIITGTLGKALGGASG-GYTAARKEVVEWLRQRSRP----YLF- 276 (401)
T ss_dssp HHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTT-CCSEEEEESSSTTCSSSC-EEEEECHHHHHHHHHHCHH----HHH-
T ss_pred HHcCCEEEEECcccccccCCCCCccHHHcCCCc-CCcEEEecchhhccCCCC-EEEEcCHHHHHHHHHhCcC----cee-
Confidence 999999999999976553 2 33332 5799999999966 7777 9999988766655432100 011
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEec-CCcHHHHHhc-
Q psy15216 1629 SGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGESLLMAI- 1706 (2602)
Q Consensus 1629 ~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~L- 1706 (2602)
.++.+...+.++.++++.... .++..+++.++++++.+.|.+ . ++.+. +. ...+..+.++. .+..++...|
T Consensus 277 ~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~l~~~L~~-~-g~~~~-~~---~~~~~~~~~~~~~~~~~l~~~l~ 349 (401)
T 1fc4_A 277 SNSLAPAIVAASIKVLEMVEA-GSELRDRLWANARQFREQMSA-A-GFTLA-GA---DHAIIPVMLGDAVVAQKFARELQ 349 (401)
T ss_dssp SCCCCHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHH-T-TCCBC-CS---SSSEEEEEEECHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHH-c-CCccc-CC---CCCEEEEEcCChHHHHHHHHHHH
Confidence 346677777777788875433 467888899999999999987 3 65554 21 23344455543 2345566555
Q ss_pred -CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1707 -KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1707 -~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
+||.++++..|..+ ...+++||+++.++|++++++++++|++.
T Consensus 350 ~~gi~v~~~~~~~~~----------------~~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 393 (401)
T 1fc4_A 350 KEGIYVTGFFYPVVP----------------KGQARIRTQMSAAHTPEQITRAVEAFTRI 393 (401)
T ss_dssp HTTEECCEECTTSSC----------------TTCEEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred HCCcEEeeecCCCCC----------------CCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 79999988765432 01368999999999999999999999974
|
| >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.4e-21 Score=259.70 Aligned_cols=326 Identities=13% Similarity=0.122 Sum_probs=229.4
Q ss_pred HHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCC---------CcEEEeCCHHHHHHHHHHhccccc
Q psy15216 12 RVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADP---------REIIWTSGATESNNLAIKGAAHFY 82 (2602)
Q Consensus 12 ~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~---------~~Iv~t~g~T~al~~~~~~l~~~~ 82 (2602)
.+.+++..++ |+....+..+.....+.+++++++++++|++. .++++|+|+|+|+..++.++....
T Consensus 89 ~~~~~~~~~~-----n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~ 163 (486)
T 1js3_A 89 MLADMLCGAI-----GCIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKV 163 (486)
T ss_dssp HHHHHHHHHH-----CCCCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-----CcCccccccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHH
Confidence 3455555554 33333344555566777889999999999974 358999999999999998875221
Q ss_pred cc-----CC---------C-EEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccCCce------EEE
Q psy15216 83 KK-----RG---------K-HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTI------LVS 141 (2602)
Q Consensus 83 ~~-----~g---------d-~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~~tk------lv~ 141 (2602)
.+ .| + .|+++.++|+++..++..+ |++++.+++++++.+|+++|+++|+++++ +|+
T Consensus 164 ~~~~~~~~gd~~~~~~~~~~~v~~s~~~h~s~~~~~~~~---G~~v~~v~~d~~~~~d~~~L~~~i~~~~~~g~~p~~vv 240 (486)
T 1js3_A 164 VRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIG---GVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVV 240 (486)
T ss_dssp HHHHHHHSTTCCHHHHHHHEEEEEETTCCHHHHHHHHHH---TCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred hhhhhccCccchhcccCCCEEEEECCCCcHHHHHHHHhC---CCceEEeecCCCCCCCHHHHHHHHHHHHhCCCCceEEE
Confidence 11 03 2 4889999999998888877 99999999988899999999999987663 999
Q ss_pred EecccCcccccccHHHHHHHHHhcCCEEEEecccccccccc-cCCC-----CCccEEEeccccccC-CCCcEEEEEecCC
Q psy15216 142 VMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDI-NIQN-----YKVDLMSFSAHKIYG-PKGIGALYIRRNP 214 (2602)
Q Consensus 142 i~~~~npTG~~~~l~~I~~la~~~g~~livD~a~a~g~~~~-dl~~-----~~~D~~~~S~~K~~G-p~G~G~l~~~~~~ 214 (2602)
+++++|+||.+.|+++|+++|++||+++|+|++|+.+.... +... .++|++++|+||+++ |.|+|+++++++.
T Consensus 241 ~~~~~n~tG~~~~l~~I~~la~~~~~~lhvD~a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~p~~~G~l~~~~~~ 320 (486)
T 1js3_A 241 ATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRT 320 (486)
T ss_dssp EEBSCTTTCCBCCHHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESCHH
T ss_pred EeCCCCCCCCCCCHHHHHHHHHHcCCEEEEehhhHHHHHHCHHHHHHhcCccccCeeEEchhhhcCCCcceEEEEEeCHH
Confidence 99999999999999999999999999999999998776432 1211 257999999999654 7789999997642
Q ss_pred --CCccc--c-eecCCCc----cccccc----cCcchhHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHhhccCce
Q psy15216 215 --RTRIE--A-QIHGGGH----EYGLRS----GTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEI 280 (2602)
Q Consensus 215 --~~~l~--~-~~~g~~~----~~~~~~----gt~~~~~~~al~~al~-~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~ 280 (2602)
.+.+. + .+.+... ...+.. ++.. ....++.++++ +...++++..++..++++++.+.|.+ .|++
T Consensus 321 ~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr-~~~~~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~-~~~~ 398 (486)
T 1js3_A 321 DLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRR-FRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQ-DPRF 398 (486)
T ss_dssp HHHGGGC------------CCSCCCGGGSSSCSCCC-CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CTTE
T ss_pred HHHHHhcCCchhhCCCcccccCCCCccccCCCCCCc-hhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc-CCCe
Confidence 23331 1 1211110 000000 1111 13445556666 34567899999999999999999988 7899
Q ss_pred EEeCCCCCCCCceEEEEEcccC--hhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEec-CCCCC
Q psy15216 281 YINGDMNNRIPHNLNISFNFIE--GESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTI-GRFTT 355 (2602)
Q Consensus 281 ~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~-~~~~t 355 (2602)
+++.++. ...+.|.++..+ ..++...| +|+.+..+..+ + ..+++|+++ ++++|
T Consensus 399 ~~~~~~~---~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~--------------~-----~~~~lRi~~~~~~~t 456 (486)
T 1js3_A 399 EVCAEVT---LGLVCFRLKGSDGLNEALLERINSARKIHLVPCRL--------------R-----GQFVLRFAICSRKVE 456 (486)
T ss_dssp EECSCCC---SSEEEEEESSCHHHHHHHHHHHHHHTSCBCEEEEE--------------T-----TEEEEEEECCCTTCC
T ss_pred EEeCCCc---eeEEEEEecChHHHHHHHHHHHHhcCCEEEEEEEE--------------C-----CEEEEEEEeCCCCCC
Confidence 9986432 345556665322 34566655 45432221111 1 126899997 67899
Q ss_pred HHHHHHHHHHHHhh
Q psy15216 356 EKEIDFTIKLLKMK 369 (2602)
Q Consensus 356 ~edid~li~~L~~~ 369 (2602)
.+|+++++++|++.
T Consensus 457 ~~di~~~~~~l~~~ 470 (486)
T 1js3_A 457 SGHVRLAWEHIRGL 470 (486)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999864
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=5.3e-22 Score=261.79 Aligned_cols=320 Identities=15% Similarity=0.127 Sum_probs=232.4
Q ss_pred CCCCHHHHHHHHHHHhhc---cCCCCCccchhHHHHHHHHHHHHHHHHHHh----C--CCC-CcEEEeCCHHHHHHHHHH
Q psy15216 1403 TPIDPRVVDKMIPYLRVQ---FGNPASRNHIYGWTAEKAIEKARNEVAQLI----Y--ADP-REIIWTSGATESNNLAIK 1472 (2602)
Q Consensus 1403 ~~~~~~v~eal~~~l~~~---~~np~~~~~~~~~~~~~~~~~lr~~ia~~~----g--~~~-~~iv~t~gaT~al~~al~ 1472 (2602)
.++++.+.+++.+.+... ..++.. . ...++|+.+++++ | +++ ++|++|+|+++|++.++.
T Consensus 40 ~~~~~~v~~a~~~~~~~~~~~~~y~~~------~----g~~~lr~~la~~~~~~~g~~~~~~~~i~~~~g~~~a~~~~~~ 109 (422)
T 3fvs_A 40 FPPPDFAVEAFQHAVSGDFMLNQYTKT------F----GYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQ 109 (422)
T ss_dssp SCCCHHHHHHHHHHHHSCGGGGSCCCT------T----CCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCccCCCCCC------C----CCHHHHHHHHHHHHHhhCCCCCCCCcEEEECChHHHHHHHHH
Confidence 367889999999988752 223221 0 1234555555555 4 456 689999999999999999
Q ss_pred hhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCC------------CCCcChhHHHhhccCCceEEEEec
Q psy15216 1473 GAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN------------NGLITLSQLEEKICSDTILVSVML 1540 (2602)
Q Consensus 1473 ~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~------------~~~id~d~l~~~i~~~t~lv~l~~ 1540 (2602)
++. ++||+|+++.|.|+++...+... |.+++.++.++ ++.+|++++++++++++++|++++
T Consensus 110 ~~~----~~gd~vl~~~p~~~~~~~~~~~~---g~~~~~~~~~~~~~~~G~~~~~~~~~~d~~~l~~~~~~~~~~v~~~~ 182 (422)
T 3fvs_A 110 ALV----DEGDEVIIIEPFFDCYEPMTMMA---GGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTSRTKALVLNT 182 (422)
T ss_dssp HHC----CTTCEEEEEESCCTTHHHHHHHT---TCEEEEEECBCCCCCSSSCCBGGGSBCCHHHHHTTCCTTEEEEEEES
T ss_pred HHc----CCCCEEEEcCCCchhhHHHHHHc---CCEEEEEecccccccccccccccCCCCCHHHHHhhcCCCceEEEECC
Confidence 986 89999999999999987766554 99999998875 346899999999999999999999
Q ss_pred cccccccccC---hHHHHHHhhhcCCEEEEeccccc----CcccccCCC----CCccEEEEccccccCCCc--eEEEEEe
Q psy15216 1541 VNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQAV----GKIDINIQN----YKVDLMSFSAHKIYGPKG--IGALYIR 1607 (2602)
Q Consensus 1541 ~~n~tG~~~~---l~~I~~ia~~~gi~vivD~a~~~----g~~~~~l~~----~~~D~~v~S~~K~~gp~G--~G~l~~~ 1607 (2602)
|+||||.++| +++|.++|++||+++|+|++|+. +..+.++.. .+.++++.|+||.+|++| +||++++
T Consensus 183 p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~ 262 (422)
T 3fvs_A 183 PNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSATGWKVGWVLGP 262 (422)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHHTCGGGCCEEEECC
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhcccccCcEEEEecchhccCCccceEEEEEeC
Confidence 9999999995 88999999999999999999975 222222221 245688899999888777 8999998
Q ss_pred cCCCCccccccccCCccccCCCCCcchhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeC
Q psy15216 1608 RNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRL-------ARIEMKEELKRILFLQKRLYNGLMESIEEIYING 1680 (2602)
Q Consensus 1608 ~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~-------~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~ 1680 (2602)
+++++.+..... ....+.+...+.++.++++. ....+++.++++.++++++.+.|.+ . ++.+..
T Consensus 263 ~~~~~~~~~~~~-------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~ 333 (422)
T 3fvs_A 263 DHIMKHLRTVHQ-------NSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQS-V-GLKPII 333 (422)
T ss_dssp HHHHHHHHHHHH-------TTTCCCCHHHHHHHHHHHHHHHHTTTCTTCHHHHHHHHHHHHHHHHHHHHHT-T-TCEEEB
T ss_pred HHHHHHHHHHHh-------hccCCCCcHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHH-c-CCeecC
Confidence 776655543221 12335566677777677763 2345778889999999999999987 3 777654
Q ss_pred CCCCCCCceEEEEEecC----C----------cHHHHHhc---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEE
Q psy15216 1681 DMNNRIPHNLNISFNFI----E----------GESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIR 1743 (2602)
Q Consensus 1681 ~~~~~~~~~~~~~~~~~----~----------~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iR 1743 (2602)
+... ....+.++.. + ..++...+ +||.+.+|..|... . ......+++|
T Consensus 334 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~--------~----~~~~~~~~iR 398 (422)
T 3fvs_A 334 PQGS---YFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSV--------P----HQKHFDHYIR 398 (422)
T ss_dssp CSBS---SEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCH--------H----HHTTSCSEEE
T ss_pred CCee---eEEEEechhhcccccccccccccccHHHHHHHHHHhcCEEEeCcHHhcCC--------c----CCCCCCCeEE
Confidence 4322 2223333221 1 23455443 69999999988642 0 0012248999
Q ss_pred EecCCCCCHHHHHHHHHHHHHh
Q psy15216 1744 FTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1744 ls~~~~~t~edid~li~~L~~~ 1765 (2602)
||++. +.+++++++++|++.
T Consensus 399 is~~~--~~e~i~~~l~~l~~~ 418 (422)
T 3fvs_A 399 FCFVK--DEATLQAMDEKLRKW 418 (422)
T ss_dssp EECCC--CHHHHHHHHHHHHHH
T ss_pred EEecC--CHHHHHHHHHHHHHH
Confidence 99886 999999999999873
|
| >3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=5.6e-21 Score=255.81 Aligned_cols=312 Identities=16% Similarity=0.203 Sum_probs=224.7
Q ss_pred cchhhhHHHHHHHHHHHHHHHhCCC--CCcEEEeCCHHHHHHHHHHhccccc----------ccCCCEEEEcCCCCcccH
Q psy15216 33 HIYGWTAEKAIEKARNEVAQLIYAD--PREIIWTSGATESNNLAIKGAAHFY----------KKRGKHIITVQTEHKSVL 100 (2602)
Q Consensus 33 ~~~~~~~~~~~~~~r~~lA~~~g~~--~~~Iv~t~g~T~al~~~~~~l~~~~----------~~~gd~Vlv~~~~~~s~~ 100 (2602)
|..+.....+.+++++++++++|.+ ++.++|++|+|+|+..++.++.... ..++++|+++...|+++.
T Consensus 127 ~~~~p~~~~le~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~~~~~~v~~s~~~H~s~~ 206 (511)
T 3vp6_A 127 YEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIK 206 (511)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGGSCCEEEEEETTSCTHHH
T ss_pred cccCchHHHHHHHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhhhhcCcccCCCeEEEECCCchHHHH
Confidence 4445566677888999999999997 4689999999999999988876321 015789999999999998
Q ss_pred HHHHHHHhCCc---EEEEeccCCCCccChHHHHhhccCC------ceEEEEecccCcccccccHHHHHHHHHhcCCEEEE
Q psy15216 101 DSIRKLENDGF---RVTYLKPKNNGLITLSQLEEKICSD------TILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHC 171 (2602)
Q Consensus 101 ~~~~~~~~~G~---~v~~v~~~~~~~ld~e~l~~~i~~~------tklv~i~~~~npTG~~~~l~~I~~la~~~g~~liv 171 (2602)
.++..+ |+ +++.+++++++.+|+++|+++|+++ +++|++++++|+||.+.|+++|+++|++||+|+|+
T Consensus 207 ~~~~~~---g~g~~~~~~v~~d~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~l~~I~~ia~~~~~~lhv 283 (511)
T 3vp6_A 207 KAGAAL---GFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHV 283 (511)
T ss_dssp HHHHHT---TSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCCHHHHHHHHHHHTCEEEE
T ss_pred HHHHHc---CCCCCcEEEeecCCCCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCcccccHHHHHHHHHHcCCEEEE
Confidence 888776 66 8999999989999999999999765 89999999999999999999999999999999999
Q ss_pred ecccccccccc-----cCCC-CCccEEEeccccc-cCCCCcEEEEEecCC-CCccc----ceecCCCc---------ccc
Q psy15216 172 DAAQAVGKIDI-----NIQN-YKVDLMSFSAHKI-YGPKGIGALYIRRNP-RTRIE----AQIHGGGH---------EYG 230 (2602)
Q Consensus 172 D~a~a~g~~~~-----dl~~-~~~D~~~~S~~K~-~Gp~G~G~l~~~~~~-~~~l~----~~~~g~~~---------~~~ 230 (2602)
|++|+.+.... .+.. .++|++++++||+ ++|.|+|+++++++. ..... +++..... ...
T Consensus 284 D~a~~~~~~~~~~~~~~~~g~~~aDsv~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~ 363 (511)
T 3vp6_A 284 DAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMHASYLFQQDKHYDVSYDTGDKA 363 (511)
T ss_dssp EETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCTTTCCSSCSSCGGGCCGGGS
T ss_pred EccchhhHhhChhhhhhccCCccCCEEEECcccccCCCcCeEEEEEeCHHHHHHHhccCCccccCcccccccccCccCCC
Confidence 99999877632 2221 2579999999995 568899999998652 22211 11111000 001
Q ss_pred ccccCcchhHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc--cC-----
Q psy15216 231 LRSGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF--IE----- 302 (2602)
Q Consensus 231 ~~~gt~~~~~~~al~~al~-~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~--~~----- 302 (2602)
+..+ .+ ...+++.++++ +..+++++..++..++++++.+.|.+ .|+++++.+..... ..+.|.+.. .+
T Consensus 364 ~~~~-r~-~~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~~-~pg~~l~~~~~p~~-~~v~f~~~p~~~~~~~~~ 439 (511)
T 3vp6_A 364 IQCG-RH-VDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKN-REEFEMVFNGEPEH-TNVCFWYIPQSLRGVPDS 439 (511)
T ss_dssp SCSS-CC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CTTEEESSSSCCSS-SCEEEEECCGGGSSCCCC
T ss_pred CCCC-Cc-hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc-CCCEEEEecCCCCe-EEEEEEEeCccccccccc
Confidence 1111 11 23455666777 44577899999999999999999987 78999986312222 234444321 11
Q ss_pred ----------hhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEec-CCCCCHHHHHHHHHHHHhh
Q psy15216 303 ----------GESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTI-GRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 303 ----------~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~-~~~~t~edid~li~~L~~~ 369 (2602)
..++.+.| +|+.+.... .... ..+++|+++ +++++.+||++++++|++.
T Consensus 440 ~~~~~~l~~~~~~l~~~L~~~G~~~~~~~-~~~~-----------------~~~~lRi~~~~~~~t~~di~~ll~~i~~~ 501 (511)
T 3vp6_A 440 PQRREKLHKVAPKIKALMMESGTTMVGYQ-PQGD-----------------KANFFRMVISNPAATQSDIDFLIEEIERL 501 (511)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCEEEEE-EETT-----------------EEEEEEECCCCTTCCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhcCCEEEEEE-EeCC-----------------ceEEEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 11344445 454332110 0000 015799999 7999999999999999974
|
| >2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.1e-22 Score=262.95 Aligned_cols=303 Identities=12% Similarity=0.091 Sum_probs=212.7
Q ss_pred HHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHHH-HhCCcEEEEec
Q psy15216 1435 AEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDGFRVTYLK 1513 (2602)
Q Consensus 1435 ~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~-~~~G~~v~~v~ 1513 (2602)
......++++++++++|.+ +.++++++++|++.++.++. ++||+|+++.+.|+++...+..+ ...|.+++.++
T Consensus 62 ~~~~~~~l~~~la~~~g~~--~~i~~~sG~~a~~~~l~~~~----~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~ 135 (398)
T 2rfv_A 62 GNPTTDALEKKLAVLERGE--AGLATASGISAITTTLLTLC----QQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVD 135 (398)
T ss_dssp CCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHC----CTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEEC
T ss_pred CChHHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHHh----CCCCEEEEcCCCcccHHHHHHHHHHHcCCEEEEeC
Confidence 3456889999999999976 66777778899999999986 79999999999999988776332 45699999998
Q ss_pred cCCCCCcChhHHHhhccCCceEEEEeccccccccccChHHHHHHhhhcCCEEEEecccccCcccccCCCCCccEEEEccc
Q psy15216 1514 PKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAH 1593 (2602)
Q Consensus 1514 ~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~ 1593 (2602)
.+ |+++++++++++|++|++++|+||||.++|+++|.++|++||+++|+|++|+.+.....+ .+++|+++.|+|
T Consensus 136 ~~-----d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~-~~~~di~~~s~s 209 (398)
T 2rfv_A 136 AA-----KPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQQPL-QLGADIVVHSVT 209 (398)
T ss_dssp TT-----SHHHHHHHCCTTEEEEEEESSBTTTTBCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCGG-GGTCSEEEEETT
T ss_pred CC-----CHHHHHHhcCCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccCCch-hhCCcEEEEeCc
Confidence 64 899999999999999999999999999999999999999999999999999877653322 357899999999
Q ss_pred cccC-CCc--eEEEEEecCCCC-ccccccccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15216 1594 KIYG-PKG--IGALYIRRNPRT-RIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGL 1669 (2602)
Q Consensus 1594 K~~g-p~G--~G~l~~~~~~~~-~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L 1669 (2602)
|+++ |.+ .|+++++++.++ .+.+...+ ++.++.+....+++.++++..... .++..+.++++.+.|
T Consensus 210 K~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~l~~~l 279 (398)
T 2rfv_A 210 KYINGHGDVIGGIIVGKQEFIDQARFVGLKD------ITGGCMSPFNAWLTLRGVKTLGIR----MERHCENALKIARFL 279 (398)
T ss_dssp TTTTCSSCCCCEEEEECHHHHHHHHHTHHHH------TTCCCCCHHHHHHHHHHHTTHHHH----HHHHHHHHHHHHHHH
T ss_pred ccccCCCCceEEEEEECHHHHHHHHHHHHHh------CCCCCCCHHHHHHHHhhhhhHHHH----HHHHHHHHHHHHHHH
Confidence 9664 444 499999986654 34433211 113456666666666666533322 333444555666666
Q ss_pred hhcCCcEE--------------EeCCCCCCCCceEEEEEecC--CcHHHHHhc--CCEEEccccccC------CCC--CC
Q psy15216 1670 MESIEEIY--------------INGDMNNRIPHNLNISFNFI--EGESLLMAI--KDIAVSSGSACT------SAS--LE 1723 (2602)
Q Consensus 1670 ~~~~~gl~--------------i~~~~~~~~~~~~~~~~~~~--~~~~~~~~L--~gI~v~~g~~~~------~~~--~~ 1723 (2602)
.+ .+.+. +..+.......+..+.++.. ....++..+ .++.++.|..+. ... ..
T Consensus 280 ~~-~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~G~~~~li~~~~~~~~~~~ 358 (398)
T 2rfv_A 280 EG-HPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGGLEAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPV 358 (398)
T ss_dssp HT-CTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHHHHHHHHHTTCSSSEECSCCSSSSCEEECHHHHTSSSS
T ss_pred Hc-CCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCCHHHHHHHHHhCCcceeccCCCCcceeeecccccccccC
Confidence 55 33222 11110011234444555421 223444444 477777775432 100 11
Q ss_pred hhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1724 PSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1724 ~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
+.......|.. .++||||++..++++++++++++|++
T Consensus 359 ~~~~~~~~g~~----~~~iRls~~~~~~~~~i~~l~~al~~ 395 (398)
T 2rfv_A 359 APEERLKAGIT----DGLIRLSVGLEDPEDIINDLEHAIRK 395 (398)
T ss_dssp CHHHHHHTTCC----TTEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred CHHHHHhcCCC----CCeEEEEecCCCHHHHHHHHHHHHHh
Confidence 23333445543 38999999999999999999999986
|
| >1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=6.3e-22 Score=258.03 Aligned_cols=329 Identities=14% Similarity=0.167 Sum_probs=234.5
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCC
Q psy15216 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK 87 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd 87 (2602)
..++.+.+++.+.+...+.++. + +..+++|+++|+++|. +++++++|+|+|+++++.++. +++||
T Consensus 9 ~~~~~v~~a~~~~~~~~~~~~~------g----~~~~~l~~~la~~~~~--~~v~~~~ggt~al~~~~~~l~---~~~gd 73 (394)
T 1o69_A 9 HMGGNELKYIEEVFKSNYIAPL------G----EFVNRFEQSVKDYSKS--ENALALNSATAALHLALRVAG---VKQDD 73 (394)
T ss_dssp ---CCHHHHHHHHHHHTTTSCT------T----HHHHHHHHHHHHHHCC--SEEEEESCHHHHHHHHHHHTT---CCTTC
T ss_pred CCCHHHHHHHHHHHHcCCccCC------C----hHHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHHcC---CCCCC
Confidence 3456788889888865322211 1 3578899999999997 589999999999999999982 27999
Q ss_pred EEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccC---CceEEEEecccCcccccccHHHHHHHHHh
Q psy15216 88 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS---DTILVSVMLVNNEIGVIQPILEIGELCRS 164 (2602)
Q Consensus 88 ~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~---~tklv~i~~~~npTG~~~~l~~I~~la~~ 164 (2602)
+|+++.++|+++...+... |++++.+++++++.+|+++|++++++ ++++|++++ |||...|+++|.++|++
T Consensus 74 ~Vl~~~~~~~~~~~~~~~~---g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~v~~~~---~~G~~~~l~~i~~l~~~ 147 (394)
T 1o69_A 74 IVLASSFTFIASVAPICYL---KAKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILTH---LYGNAAKMDEIVEICKE 147 (394)
T ss_dssp EEEEESSSCGGGTHHHHHT---TCEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEEC---GGGCCCCHHHHHHHHHH
T ss_pred EEEECCCccHHHHHHHHHc---CCEEEEEEeCCCCCcCHHHHHHHHhcccCCceEEEEEC---CCCChhhHHHHHHHHHH
Confidence 9999999999998887765 99999999987888999999999976 799999986 79999999999999999
Q ss_pred cCCEEEEecccccccccccCC--C-CCccEEEeccccccCCCCcEEEEEe-cCCCCcccceecCCC--------cccccc
Q psy15216 165 KGVIFHCDAAQAVGKIDINIQ--N-YKVDLMSFSAHKIYGPKGIGALYIR-RNPRTRIEAQIHGGG--------HEYGLR 232 (2602)
Q Consensus 165 ~g~~livD~a~a~g~~~~dl~--~-~~~D~~~~S~~K~~Gp~G~G~l~~~-~~~~~~l~~~~~g~~--------~~~~~~ 232 (2602)
+|+++|+|++|+.|....+.. . .++|++++|.||.+++.++|+++++ +++++.+.+....+. ...++.
T Consensus 148 ~~~~li~Dea~~~g~~~~~~~~~~~~~~~~~s~s~~K~l~~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~g~~ 227 (394)
T 1o69_A 148 NDIVLIEDAAEALGSFYKNKALGTFGEFGVYSYNGNKIITTSGGGMLIGKNKEKIEKARFYSTQARENCLHYEHLDYGYN 227 (394)
T ss_dssp TTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCCSSCEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSSCCCB
T ss_pred cCCEEEEECcCcccceeCCcccccccCcEEEEEeCCccCCCCCceEEEECCHHHHHHHHHHHHhccccCccccccccCcc
Confidence 999999999999765432211 1 2467888888998887789999996 566666554322211 112333
Q ss_pred ccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCC--CCCceEEEEEcc----------
Q psy15216 233 SGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNN--RIPHNLNISFNF---------- 300 (2602)
Q Consensus 233 ~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~--~~~~~~~~~~~~---------- 300 (2602)
.++++..+.+++.. ++ .+++..++.+++++++.+.|.+ . ++++++... ...+++.+.++.
T Consensus 228 ~~~~~~~aa~~l~~-l~----~l~~~~~~~~~~~~~l~~~L~~-~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 299 (394)
T 1o69_A 228 YRLSNVLGAIGVAQ-ME----VLEQRVLKKREIYEWYKEFLGE-Y--FSFLDELENSRSNRWLSTALINFDKNELNACQK 299 (394)
T ss_dssp CBCCHHHHHHHHHH-HT----THHHHHHHHHHHHHHHHHHHTT-T--EECCCCCTTEECCCSSEEEEESCCGGGSCCCCE
T ss_pred cCcCHHHHHHHHHH-HH----HHHHHHHHHHHHHHHHHHHhcc-c--ccccCCCCCCcceeEEEEEEecchhhccccccc
Confidence 44566555554422 33 3566788899999999999977 3 665544221 112245566652
Q ss_pred ------------cChhHHHHHh--CCeEEcccccCCCCCCChHHHHHH-----cCCCccCCCCeEEEecCCCCCHHHHHH
Q psy15216 301 ------------IEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRA-----LGCNDELAHSSIRFTIGRFTTEKEIDF 361 (2602)
Q Consensus 301 ------------~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~-----~g~~~~~~~~~iRis~~~~~t~edid~ 361 (2602)
.+..++.+.| +||.++++..|... +|.+ .. +.+.++...+.+|++++.++|++|+++
T Consensus 300 ~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~--~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~t~edi~~ 375 (394)
T 1o69_A 300 DINISQKNITLHPKISKLIEDLKNKQIETRPLWKAMHT--QEVF--KGAKAYLNGNSELFFQKGICLPSGTAMSKDDVYE 375 (394)
T ss_dssp EEECCCCCCCCCHHHHHHHHHHHHTTCCCBCCCCCGGG--CGGG--TTCEEEECSHHHHHHHHEEEECCCTTCCHHHHHH
T ss_pred cccccccccccccCHHHHHHHHHHcCCcccccCCcccc--chhh--hccCCCCChHHHHHhcCeEEccCCCCCCHHHHHH
Confidence 1455677766 79999988544211 1111 11 111111222567887899999999999
Q ss_pred HHHHHHhh
Q psy15216 362 TIKLLKMK 369 (2602)
Q Consensus 362 li~~L~~~ 369 (2602)
++++|++.
T Consensus 376 ~~~~l~~~ 383 (394)
T 1o69_A 376 ISKLILKS 383 (394)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999964
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.7e-21 Score=254.69 Aligned_cols=322 Identities=11% Similarity=0.003 Sum_probs=232.5
Q ss_pred CCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhC---CCCC-cEEEeCCHHHHHHHHHHhhhhhh
Q psy15216 1403 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIY---ADPR-EIIWTSGATESNNLAIKGAAHFY 1478 (2602)
Q Consensus 1403 ~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g---~~~~-~iv~t~gaT~al~~al~~l~~~~ 1478 (2602)
.+.++.+.+++.+.++....++.... ..++.+++.+.+.+.+| ++++ +|++|+|+++|++.++.++.
T Consensus 42 ~~~~~~v~~a~~~~~~~~~~y~~~~g------~~~lr~~la~~l~~~~g~~~~~~~~~i~~t~g~~~al~~~~~~~~--- 112 (396)
T 3jtx_A 42 HPTPKVITDALTASLHELEKYPLTAG------LPELRQACANWLKRRYDGLTVDADNEILPVLGSREALFSFVQTVL--- 112 (396)
T ss_dssp SCCCHHHHHHHHHTGGGGGSCCCTTC------CHHHHHHHHHHHHHHTTTCCCCTTTSEEEESSHHHHHHHHHHHHC---
T ss_pred CCCCHHHHHHHHHHhhhccCCCCCCC------cHHHHHHHHHHHHHhcCCCCCCCCCeEEEcCCcHHHHHHHHHHHh---
Confidence 45678999999998876555554311 12234444444444557 4588 99999999999999999987
Q ss_pred ccCC-----CEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCC-CCcChhHHHhhccCCceEEEEeccccccccccChH
Q psy15216 1479 KKRG-----KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN-GLITLSQLEEKICSDTILVSVMLVNNEIGVIQPIL 1552 (2602)
Q Consensus 1479 ~~~g-----d~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~-~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~ 1552 (2602)
++| |+|+++.|+|+++...+..+ |++++.++.+.+ +.+|+++|++++++++++|++++|+||||.++|.+
T Consensus 113 -~~g~~~~~d~vl~~~p~~~~~~~~~~~~---g~~~~~v~~~~~g~~~d~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~ 188 (396)
T 3jtx_A 113 -NPVSDGIKPAIVSPNPFYQIYEGATLLG---GGEIHFANCPAPSFNPDWRSISEEVWKRTKLVFVCSPNNPSGSVLDLD 188 (396)
T ss_dssp -CC---CCCCEEEEEESCCHHHHHHHHHT---TCEEEEEECCTTTCCCCGGGSCHHHHHTEEEEEEESSCTTTCCCCCHH
T ss_pred -CCCCccCCCEEEEcCCCcHhHHHHHHHc---CCEEEEeecCCCCCccCHHHHHHhhccCcEEEEEECCCCCCCCcCCHH
Confidence 786 79999999999887765554 999999998654 45899999999999999999999999999999955
Q ss_pred H---HHHHhhhcCCEEEEecccccCcc----cccC--------CCCCccEEEEccccccCCCc--eEEEEEecCCCCccc
Q psy15216 1553 E---IGELCRSKGVIFHCDAAQAVGKI----DINI--------QNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIE 1615 (2602)
Q Consensus 1553 ~---I~~ia~~~gi~vivD~a~~~g~~----~~~l--------~~~~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~ 1615 (2602)
+ |+++|++||+++|+|++|+.... +... ...+.++++.|+||.+|++| +||++.++++++.+.
T Consensus 189 ~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~ 268 (396)
T 3jtx_A 189 GWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQLGRSRQKLLMFTSLSKRSNVPGLRSGFVAGDAELLKNFL 268 (396)
T ss_dssp HHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHHHHHHTTCCCTTEEEEEESTTTSSCGGGCCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHcCCEEEEEccccccccCCCCCchHHhhhhhcccccCcEEEEeccccccCCcccceEEEEeCHHHHHHHH
Confidence 5 89999999999999999875321 2211 02467799999999877777 799998877666554
Q ss_pred cccccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEe
Q psy15216 1616 AQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN 1695 (2602)
Q Consensus 1616 ~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~ 1695 (2602)
... ....++++...+.++.++++. ...+.+.++++.++++++.+.|.+ .. .+..+ . ......+.++
T Consensus 269 ~~~-------~~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~l~~~l~~-~~--~~~~~-~--~~~~~~~~~~ 334 (396)
T 3jtx_A 269 LYR-------TYHGSAMSIPVQRASIAAWDD-EQHVIDNRRLYQEKFERVIPILQQ-VF--DVKLP-D--ASFYIWLKVP 334 (396)
T ss_dssp HHH-------HHHTCCCCHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHTT-TS--CCCCC-S--SSSEEEEECT
T ss_pred HHH-------hhcccCCCHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHh-cC--CccCC-C--eeEEEEEECC
Confidence 332 112346677777777777763 345678888889999999999976 21 12212 1 1223334444
Q ss_pred cCCcHHHHHhc---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1696 FIEGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1696 ~~~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
..+..++...| +||.+.+|..|.... .......+++||+++. +.+++++++++|++
T Consensus 335 ~~~~~~~~~~l~~~~gi~v~~g~~~~~~~-----------~~~~~~~~~iRis~~~--~~~~i~~~l~~l~~ 393 (396)
T 3jtx_A 335 DGDDLAFARNLWQKAAIQVLPGRFLARDT-----------EQGNPGEGYVRIALVA--DVATCVKAAEDIVS 393 (396)
T ss_dssp TSCHHHHHHHHHHHHCEECEEGGGGCCCC-----------TTCCTTTTEEEEECCS--CHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCEEEeCChHhCCcc-----------cccCCCCCeEEEEEcC--CHHHHHHHHHHHHH
Confidence 43556666655 599999999886520 0011234899999985 89999999999986
|
| >3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=6.7e-21 Score=255.12 Aligned_cols=329 Identities=16% Similarity=0.168 Sum_probs=232.5
Q ss_pred CHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCC--CCcEEEeCCHHHHHHHHHHhhhhhhc----
Q psy15216 1406 DPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYAD--PREIIWTSGATESNNLAIKGAAHFYK---- 1479 (2602)
Q Consensus 1406 ~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~--~~~iv~t~gaT~al~~al~~l~~~~~---- 1479 (2602)
+..+.+++...+.. ....|..+....++.+++++++++++|.+ ++.++||+|+|+|+..++.++.....
T Consensus 109 ~~~~~e~l~~~~~~-----~~~~~~~~p~~~~le~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~ 183 (511)
T 3vp6_A 109 IGLAGEWLTSTANT-----NMFTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVK 183 (511)
T ss_dssp HHHHHHHHHHHHCC-----CSSCTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHH
T ss_pred HHHHHHHHHHHhcc-----CCCCcccCchHHHHHHHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhhh
Confidence 33445666665532 22234556677788899999999999997 46899999999999999888763210
Q ss_pred ------cCCCEEEEcCCCCcchHHHHHHHHhCCc---EEEEeccCCCCCcChhHHHhhccCC------ceEEEEeccccc
Q psy15216 1480 ------KRGKHIITVQTEHKSVLDSIRKLENDGF---RVTYLKPKNNGLITLSQLEEKICSD------TILVSVMLVNNE 1544 (2602)
Q Consensus 1480 ------~~gd~Vlv~~~~~~s~~~~~~~~~~~G~---~v~~v~~~~~~~id~d~l~~~i~~~------t~lv~l~~~~n~ 1544 (2602)
.+++.|+++.+.|+++...+..+ |+ +++.++.+.++.+|+++|+++|+++ |++|++++++|+
T Consensus 184 ~~G~~~~~~~~v~~s~~~H~s~~~~~~~~---g~g~~~~~~v~~d~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~ 260 (511)
T 3vp6_A 184 TKGMAAVPKLVLFTSEQSHYSIKKAGAAL---GFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTV 260 (511)
T ss_dssp HHCGGGSCCEEEEEETTSCTHHHHHHHHT---TSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSS
T ss_pred hcCcccCCCeEEEECCCchHHHHHHHHHc---CCCCCcEEEeecCCCCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCC
Confidence 15789999999999998888776 65 8999999988999999999999865 889999999999
Q ss_pred cccccChHHHHHHhhhcCCEEEEecccccCccccc-----CCC-CCccEEEEcccc-ccCCCceEEEEEecCC-CCcc--
Q psy15216 1545 IGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDIN-----IQN-YKVDLMSFSAHK-IYGPKGIGALYIRRNP-RTRI-- 1614 (2602)
Q Consensus 1545 tG~~~~l~~I~~ia~~~gi~vivD~a~~~g~~~~~-----l~~-~~~D~~v~S~~K-~~gp~G~G~l~~~~~~-~~~l-- 1614 (2602)
||.+.|+++|+++|++||+|+|+|++|+.+....+ +.. .++|++++++|| +++|.|+|+++++++. ....
T Consensus 261 ~G~vd~l~~I~~ia~~~~~~lhvD~a~~~~~~~~~~~~~~~~g~~~aDsv~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~ 340 (511)
T 3vp6_A 261 YGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQ 340 (511)
T ss_dssp SCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHC
T ss_pred CcccccHHHHHHHHHHcCCEEEEEccchhhHhhChhhhhhccCCccCCEEEECcccccCCCcCeEEEEEeCHHHHHHHhc
Confidence 99999999999999999999999999998776321 221 257999999999 5578899999998753 2221
Q ss_pred -cc-ccccCCc---------cccCCCCCcchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCC
Q psy15216 1615 -EA-QIHGGGH---------EYGLRSGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDM 1682 (2602)
Q Consensus 1615 -~~-~~~g~~~---------~~~~~~gt~~~~~~~al~~aL~-~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~ 1682 (2602)
.+ .+..... ...+. ++... ...++..++. +...+++++.++..++++++.+.|.+ .|++++..+.
T Consensus 341 ~~~~yl~~~~~~~~~~~~~~~~~~~-~~r~~-~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~~-~pg~~l~~~~ 417 (511)
T 3vp6_A 341 MHASYLFQQDKHYDVSYDTGDKAIQ-CGRHV-DIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKN-REEFEMVFNG 417 (511)
T ss_dssp CCCTTTCCSSCSSCGGGCCGGGSSC-SSCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CTTEEESSSS
T ss_pred cCCccccCcccccccccCccCCCCC-CCCch-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc-CCCEEEEecC
Confidence 11 1111100 01111 12222 3445556676 45567899999999999999999987 7899998631
Q ss_pred CCCCCceEEEEEec--CC---------------cHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEE
Q psy15216 1683 NNRIPHNLNISFNF--IE---------------GESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIR 1743 (2602)
Q Consensus 1683 ~~~~~~~~~~~~~~--~~---------------~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iR 1743 (2602)
.... ....|.+.. .+ ..++...| +|+.+... .+... ..+++|
T Consensus 418 ~p~~-~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~G~~~~~~-~~~~~-----------------~~~~lR 478 (511)
T 3vp6_A 418 EPEH-TNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVGY-QPQGD-----------------KANFFR 478 (511)
T ss_dssp CCSS-SCEEEEECCGGGSSCCCCHHHHHHHHHHHHHHHHHHHHHTSCEEEE-EEETT-----------------EEEEEE
T ss_pred CCCe-EEEEEEEeCccccccccchhHHHHHHHHHHHHHHHHHhcCCEEEEE-EEeCC-----------------ceEEEE
Confidence 2222 234444321 11 11344444 45332211 11000 125799
Q ss_pred Eec-CCCCCHHHHHHHHHHHHH
Q psy15216 1744 FTI-GRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1744 ls~-~~~~t~edid~li~~L~~ 1764 (2602)
+++ ++.+|.+||++++++|++
T Consensus 479 i~~~~~~~t~~di~~ll~~i~~ 500 (511)
T 3vp6_A 479 MVISNPAATQSDIDFLIEEIER 500 (511)
T ss_dssp ECCCCTTCCHHHHHHHHHHHHH
T ss_pred EEecCCCCCHHHHHHHHHHHHH
Confidence 998 789999999999999997
|
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-21 Score=259.34 Aligned_cols=289 Identities=18% Similarity=0.222 Sum_probs=214.0
Q ss_pred HHHHHHHHHHHhC--------CCCCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEE
Q psy15216 43 IEKARNEVAQLIY--------ADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVT 114 (2602)
Q Consensus 43 ~~~~r~~lA~~~g--------~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~ 114 (2602)
.+++|++++++++ +++++|++++|+++|+..++.++. ++||.|+++.+.|+++...+. ...|++++
T Consensus 88 ~~~l~~~la~~~~~~~~~~~~~~~~~v~~~~gg~~a~~~~~~~l~----~~gd~vl~~~p~~~~~~~~~~--~~~g~~~~ 161 (435)
T 3piu_A 88 LPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLA----DPGEAVLIPTPYYPGFDRDLK--WRTGVEIV 161 (435)
T ss_dssp CHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHC----CTTCEEEEEESCCTTHHHHTT--TTTCCEEE
T ss_pred cHHHHHHHHHHHHHhhCCCCCCCHHHEEEcCChHHHHHHHHHHhc----CCCCeEEECCCccccHHHHHH--HhcCCEEE
Confidence 4678888888887 678899999999999999999987 899999999999999876554 13599999
Q ss_pred EeccCC--CCccChHHHHhhccC------CceEEEEecccCcccccccH---HHHHHHHHhcCCEEEEecccccccc---
Q psy15216 115 YLKPKN--NGLITLSQLEEKICS------DTILVSVMLVNNEIGVIQPI---LEIGELCRSKGVIFHCDAAQAVGKI--- 180 (2602)
Q Consensus 115 ~v~~~~--~~~ld~e~l~~~i~~------~tklv~i~~~~npTG~~~~l---~~I~~la~~~g~~livD~a~a~g~~--- 180 (2602)
.++.++ ++.+|+++|++++++ ++++|++++|+||||.++|. ++|.++|++||+++|+|++|+.+..
T Consensus 162 ~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~ 241 (435)
T 3piu_A 162 PIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSP 241 (435)
T ss_dssp EEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSS
T ss_pred EeeCCCccCCcCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC
Confidence 999875 356899999999975 89999999999999999885 6788889999999999999975321
Q ss_pred -cccCC----C---------CCccEEEeccccccCCCC--cEEEEEec-CCCCcccceecCCCccccccccCcchhHHHH
Q psy15216 181 -DINIQ----N---------YKVDLMSFSAHKIYGPKG--IGALYIRR-NPRTRIEAQIHGGGHEYGLRSGTLATHQIVG 243 (2602)
Q Consensus 181 -~~dl~----~---------~~~D~~~~S~~K~~Gp~G--~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~a 243 (2602)
...+. + .+..+++.|+||.+|++| +|++++++ .+.+.+.... ..++.+.+...+
T Consensus 242 ~~~~~~~~~~~~~~d~~~~~~~~~i~i~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~ 312 (435)
T 3piu_A 242 SFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS---------SFGLVSSQTQHL 312 (435)
T ss_dssp CCCCHHHHHHC-------CGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHHHHHHHHG---------GGSCCCHHHHHH
T ss_pred CCcCHHHhccccccccccCCCCCEEEEEeeecccCCCceeEEEEEeCCHHHHHHHHHHh---------hcCCCCHHHHHH
Confidence 11111 1 122388899999888777 79999854 3433333211 123445555555
Q ss_pred HHHHHH---HHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEccc-------ChhHHHHHh--C
Q psy15216 244 MGEAFR---LARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI-------EGESLLMAI--K 311 (2602)
Q Consensus 244 l~~al~---~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~-------~~~~~~~~L--~ 311 (2602)
+.++++ +...+.++.++++.++++++.+.|.+ .++.+..+.. ..+..+.++.. +..++...| +
T Consensus 313 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~--~g~~~~~~~~---g~~~~~~l~~~~~~~~~~~~~~~~~~l~~~ 387 (435)
T 3piu_A 313 LSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQK--SGISCLNGNA---GLFCWVDMRHLLRSNTFEAEMELWKKIVYE 387 (435)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TTCEECCCCS---SSEEEEECGGGSSSSSHHHHHHHHHHHHHT
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCcccCCCe---eEEEEEEcccccccCCchhHHHHHHHHHHH
Confidence 555665 22345677888889999999999987 3777764432 23444455432 233555555 4
Q ss_pred -CeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 312 -DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 312 -gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
||.+++|..|.+. ..+++||+++.. +++++++++++|++.
T Consensus 388 ~gi~v~~g~~~~~~-----------------~~~~iRi~~~~~-~~e~i~~~l~~l~~~ 428 (435)
T 3piu_A 388 VHLNISPGSSCHCT-----------------EPGWFRVCFANL-PERTLDLAMQRLKAF 428 (435)
T ss_dssp SCEECEEGGGGTCS-----------------STTEEEEECSSS-CHHHHHHHHHHHHHH
T ss_pred CCEEEeCCcccCCC-----------------CCCEEEEEeeCC-CHHHHHHHHHHHHHH
Confidence 9999998877542 138999999765 999999999999864
|
| >1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.87 E-value=6.3e-22 Score=251.87 Aligned_cols=296 Identities=15% Similarity=0.096 Sum_probs=202.8
Q ss_pred HHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHH-HHhCCcEEEEeccCCCCC
Q psy15216 1441 KARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDGFRVTYLKPKNNGL 1519 (2602)
Q Consensus 1441 ~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~-~~~~G~~v~~v~~~~~~~ 1519 (2602)
++++.+++++|++ +.++++++|+|++.++.++. ++||+|++++++|+++...+.. +...|+++++++.
T Consensus 2 ~l~~~la~~~g~~--~~i~~~sG~~a~~~~~~~~~----~~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~----- 70 (331)
T 1pff_A 2 ALEGKIAKLEHAE--ACAATASGMGAIAASVWTFL----KAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDM----- 70 (331)
T ss_dssp HHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHC----CTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECT-----
T ss_pred hHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHhc----CCCCEEEEcCCCcchHHHHHHHHHHhcCCEEEEeCC-----
Confidence 5789999999986 44555556999999999886 7999999999999998777654 3456999999875
Q ss_pred cChhHHHhhccCCceEEEEeccccccccccChHHHHHHhhh-cCCEEEEecccccCcccccCCCCCccEEEEccccccC-
Q psy15216 1520 ITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRS-KGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYG- 1597 (2602)
Q Consensus 1520 id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~~ia~~-~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K~~g- 1597 (2602)
.|+++++++++++|++|++++++||||.+.|+++|.++|++ ||+++|+|++|+.|....++ ++++|++++|+||++|
T Consensus 71 ~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~~li~D~a~~~~~~~~~~-~~~~d~~~~s~~K~~~~ 149 (331)
T 1pff_A 71 AVPGNIEKHLKPNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILTNPL-DLGVDIVVHSATKYING 149 (331)
T ss_dssp TSTTHHHHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHHCCGG-GGTCSEEEEETTTTTSS
T ss_pred CCHHHHHHhhcCCCeEEEEECCCCCcCcccCHHHHHHHHhhhcCCEEEEECCCcccccCChh-hcCCcEEEEECccccCC
Confidence 48899999999999999999999999999999999999999 99999999999887654444 4678999999999655
Q ss_pred CCc--eEEEEEec-CCCCccccccccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--
Q psy15216 1598 PKG--IGALYIRR-NPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMES-- 1672 (2602)
Q Consensus 1598 p~G--~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~-- 1672 (2602)
|.+ +|++++++ ++++.+.+...++ ..++.+....+++..+++......+.. ....+.+.+.+.+.
T Consensus 150 ~~~r~~G~~~~~~~~~~~~l~~~~~~~------~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~~~l~~~~~ 219 (331)
T 1pff_A 150 HTDVVAGLVCSRADIIAKVKSQGIKDI------TGAIISPHDAWLITRGTLTLDMRVKRA----AENAQKVAEFLHEHKA 219 (331)
T ss_dssp SSSCCCEEEEECHHHHHHHHHTCCCCC------CCCCCCHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHCTT
T ss_pred CCCceEEEEEeCcHHHHHHHHHHHHhh------cCCCCCHHHHHHHHcCcchHHHHHHHH----HHHHHHHHHHHHcCCC
Confidence 554 79999997 7666665544320 113445444444445555332222333 33333333443321
Q ss_pred -----------CCcEEEeCCCCCCCCceEEEEEecCCcHHHHHhc--CCEEEcccc---------ccCCC--CCChhHHH
Q psy15216 1673 -----------IEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDIAVSSGS---------ACTSA--SLEPSYVL 1728 (2602)
Q Consensus 1673 -----------~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~v~~g~---------~~~~~--~~~~~~~~ 1728 (2602)
.+++.+..+.....+.+..+.++ +...+...| .||.++..+ +|..+ ...+....
T Consensus 220 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~gI~~~~~s~g~~~sl~~~~~~~~~~~~~~~~~ 297 (331)
T 1pff_A 220 VKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVD--GLEKAKKVLDNCHVVSLAVSLGGPESLIQHPASMTHAGVPKEER 297 (331)
T ss_dssp CCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECS--SHHHHHHHHHTCSSSEECSSCCSSSCEEECHHHHTSTTSCHHHH
T ss_pred eeEEECCCCCCCccHHHHHhhCCCCceEEEEEEC--CHHHHHHHHHhCCCceeccCCCCcceeeecchhhcccccCHHHH
Confidence 11222211111112334444433 445555554 688665442 33211 01223334
Q ss_pred HHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1729 RALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1729 ~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
..+|.+ .+++|+|++.++|.+++++++++|++
T Consensus 298 ~~~g~~----~~~iRis~~~~~t~~~i~~l~~~l~~ 329 (331)
T 1pff_A 298 EAAGLT----DNLIRLSVGCENVQDIIDDLKQALDL 329 (331)
T ss_dssp HHTTCC----TTEEEEECCSSCHHHHHHHHHHHHHT
T ss_pred HhcCCC----CCeEEEEEecCCHHHHHHHHHHHHHH
Confidence 455654 38999999999999999999999985
|
| >3dqg_A Heat shock 70 kDa protein F; structural genomics, APC90008.12, HSP70 protein, peptide-BIN domain, PSI-2, protein structure initiative; 1.72A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.5e-22 Score=215.31 Aligned_cols=125 Identities=43% Similarity=0.690 Sum_probs=120.4
Q ss_pred eeccccccceEEeeccEEEEEEecCCcCCCCcEEEEEeecccccceeEEEeecCcccccCCceeEEEEeeCCCCCCCCcc
Q psy15216 2406 LLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRA 2485 (2602)
Q Consensus 2406 ~~d~~~~~~gi~~~~~~~~~ii~k~t~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~~~~~~~g~~ 2485 (2602)
+.|++|+|||+++.+|.|.+||+||++||+++++.|+|..|||+.+.|.||||++..+.+|.+||+|.|+++||+|+|.+
T Consensus 2 ~~DV~p~slGie~~gg~~~~lI~rnt~iP~~k~~~f~t~~dnQ~~v~i~VyqGe~~~~~dn~~LG~f~l~gipp~p~G~~ 81 (151)
T 3dqg_A 2 NADVTPLSLGIETLGGIMTKLITRNTTIPTKKSQVFSTAADGQTQVQIKVFQGEREMATSNKLLGQFSLVGIPPAPRGVP 81 (151)
T ss_dssp --CBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCCCCTTCS
T ss_pred cceeeeeEEEEEEcCCEEEEEEECcCccCEEEEEEEEECCCCcceEEEEEEEcCCcccccCcEEEEEEEeCCCCCCCCCc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEEcCCccEEEEEEeecCCcEEEEEEecCCCCChHHHhcc
Q psy15216 2486 RIKVTYQVDADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKNG 2530 (2602)
Q Consensus 2486 ~i~v~f~id~~g~l~V~a~~~~tg~~~~~~i~~~~~l~~~ei~~~ 2530 (2602)
+|+|+|+||.||+|+|+|.++.||++..++|...++||++||++.
T Consensus 82 ~IeVtf~iD~nGiL~Vsa~d~~tg~~~~i~I~~~~~Ls~~ei~~~ 126 (151)
T 3dqg_A 82 QVEVTFDIDANGIVNVSARDRGTGKEQQIVIQSSGGLSKDQIENM 126 (151)
T ss_dssp CEEEEEEECTTSEEEEEEEETTTCCEEEEEEECSSSSCHHHHHHH
T ss_pred EEEEEEEeccCcEEEEEEEEccCCCEeEEEEecCCCCCHHHHHHH
Confidence 999999999999999999999999999999999899999999963
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.7e-21 Score=253.45 Aligned_cols=295 Identities=12% Similarity=0.057 Sum_probs=218.6
Q ss_pred HHHHHHHHHHHHHhCCCC---------CcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHHHHHhCCc
Q psy15216 41 KAIEKARNEVAQLIYADP---------REIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGF 111 (2602)
Q Consensus 41 ~~~~~~r~~lA~~~g~~~---------~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~ 111 (2602)
++.+.+.+++++.+|.+. ++|++|+|+++|+++++.++. ++||+|+++.|.|+++...++. .|+
T Consensus 82 ~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~----~~gd~Vlv~~p~y~~~~~~~~~---~g~ 154 (425)
T 2r2n_A 82 ELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMII----NPGDNVLLDEPAYSGTLQSLHP---LGC 154 (425)
T ss_dssp HHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHC----CTTCEEEEESSCCHHHHHHHGG---GTC
T ss_pred HHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhC----CCCCEEEEeCCCcHHHHHHHHH---cCC
Confidence 345556666666678753 589999999999999999987 7999999999999997766544 499
Q ss_pred EEEEeccCCCCccChHHHHhhcc------------CCceEEEE-ecccCcccccccHH---HHHHHHHhcCCEEEEeccc
Q psy15216 112 RVTYLKPKNNGLITLSQLEEKIC------------SDTILVSV-MLVNNEIGVIQPIL---EIGELCRSKGVIFHCDAAQ 175 (2602)
Q Consensus 112 ~v~~v~~~~~~~ld~e~l~~~i~------------~~tklv~i-~~~~npTG~~~~l~---~I~~la~~~g~~livD~a~ 175 (2602)
+++.++.+++ .+|+++|+++++ +++++|++ ++++||||.++|.+ +|+++|++||+++|+|++|
T Consensus 155 ~~~~v~~~~~-~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~li~De~~ 233 (425)
T 2r2n_A 155 NIINVASDES-GIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLIIEDDPY 233 (425)
T ss_dssp EEEEECEETT-EECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTT
T ss_pred EEEEeCcCCC-CCCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCc
Confidence 9999998765 489999999986 46888876 79999999999866 8999999999999999999
Q ss_pred cc----ccccccC---CCCCccEEEeccccccCCCC--cEEEEEecCCCCcccceecCCCccccccccCcchhHHHHHHH
Q psy15216 176 AV----GKIDINI---QNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGE 246 (2602)
Q Consensus 176 a~----g~~~~dl---~~~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~ 246 (2602)
+. +..+.++ ...+.++++.|+||.+| +| +||+++++++++.+..... ...++++.+...++.+
T Consensus 234 ~~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~~-~GlRiG~~~~~~~l~~~l~~~~~-------~~~~~~~~~~q~a~~~ 305 (425)
T 2r2n_A 234 YFLQFNKFRVPTFLSMDVDGRVIRADSFSKIIS-SGLRIGFLTGPKPLIERVILHIQ-------VSTLHPSTFNQLMISQ 305 (425)
T ss_dssp GGGBSSSSCCCCTGGGCTTSCEEEEEESTTTTC-STTCCEEEEEEHHHHHHHHHHHH-------TTTCSSCHHHHHHHHH
T ss_pred ccccCCCCCCCCccccCCCCCEEEEccchhhcc-CccceEEEecCHHHHHHHHHHHH-------HhcCCCCHHHHHHHHH
Confidence 73 2212222 22345688999999888 77 7999999887766654331 1234667777777777
Q ss_pred HHHHH-----HHhHHHHHHHHHHHHHHHHHHHhhccCceE-EeCCCCCCCCceEEEEEcc-cChhH-HHHHh--CCeEEc
Q psy15216 247 AFRLA-----RIEMKEELKRILFLQKRLYNGLMESIEEIY-INGDMNNRIPHNLNISFNF-IEGES-LLMAI--KDIAVS 316 (2602)
Q Consensus 247 al~~~-----~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~-l~~~~~~~~~~~~~~~~~~-~~~~~-~~~~L--~gI~v~ 316 (2602)
+|+.. ..++++.+++++++++++.+.|.+.++++. +..+.. ..++.+.++. .+..+ +...+ +||.++
T Consensus 306 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p~~---g~~~~~~~~~~~~~~~~~~~~l~~~gv~v~ 382 (425)
T 2r2n_A 306 LLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVPAA---GMFLWIKVKGINDVKELIEEKAVKMGVLML 382 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEECCCSB---SSEEEEEETTCSCCHHHHHTHHHHTTEECE
T ss_pred HHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCCCc---eEEEEEEeCCCCCHHHHHHHHHHHCCcEEe
Confidence 77642 245677788888999999999987556763 443322 3345555654 34445 34445 799999
Q ss_pred ccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 317 SGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 317 ~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
+|..|... .....+++||+++. .+++++++++++|++.
T Consensus 383 pg~~f~~~--------------~~~~~~~iRis~~~-~~~~~i~~~~~~l~~~ 420 (425)
T 2r2n_A 383 PGNAFYVD--------------SSAPSPYLRASFSS-ASPEQMDVAFQVLAQL 420 (425)
T ss_dssp EGGGGSSS--------------TTSCCCEEEEECSS-CCHHHHHHHHHHHHHH
T ss_pred chhhhcCC--------------CCCCCCEEEEEeCC-CCHHHHHHHHHHHHHH
Confidence 99877542 01123789999984 5999999999999864
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.87 E-value=2e-21 Score=252.15 Aligned_cols=313 Identities=12% Similarity=-0.022 Sum_probs=225.8
Q ss_pred CCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCC--CCCcEEEeCCHHHHHHHHHHhhhhhhcc
Q psy15216 1403 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA--DPREIIWTSGATESNNLAIKGAAHFYKK 1480 (2602)
Q Consensus 1403 ~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~--~~~~iv~t~gaT~al~~al~~l~~~~~~ 1480 (2602)
.+.++.+.+++.+.+.....++.... ..++.+++.+.+++.+|. ++++|++|+|+|+|++.++.++. +
T Consensus 35 ~~~~~~v~~a~~~~~~~~~~y~~~~g------~~~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~al~~~~~~~~----~ 104 (376)
T 3ezs_A 35 FETPKFIQDALKNHTHSLNIYPKSAF------EESLRAAQRGFFKRRFKIELKENELISTLGSREVLFNFPSFVL----F 104 (376)
T ss_dssp SCCCHHHHHHHHTTGGGGGSCCCTTC------CHHHHHHHHHHHHHHHSCCCCGGGEEEESSSHHHHHHHHHHHT----T
T ss_pred CCCCHHHHHHHHHhhhhcCCCCCCCC------CHHHHHHHHHHHHHHhCCCCCHHHEEECcCcHHHHHHHHHHHc----C
Confidence 45678899999887754444443210 112333444444444487 77899999999999999999987 7
Q ss_pred C--CCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccCCceEEEEeccccccccccC---hHHHH
Q psy15216 1481 R--GKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIG 1555 (2602)
Q Consensus 1481 ~--gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~---l~~I~ 1555 (2602)
+ ||+|+++.|+|+++...+... |.+++.++.++++.+++ ++++++++++++|++++|+||||.++| +++|.
T Consensus 105 ~~~gd~vl~~~p~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~-~l~~~~~~~~~~v~~~~p~nptG~~~~~~~l~~i~ 180 (376)
T 3ezs_A 105 DYQNPTIAYPNPFYQIYEGAAKFI---KAKSLLMPLTKENDFTP-SLNEKELQEVDLVILNSPNNPTGRTLSLEELISWV 180 (376)
T ss_dssp TCSSCEEEEEESCCTHHHHHHHHT---TCEEEEEECCGGGTSCC-CCCHHHHHHCSEEEECSSCTTTCCCCCHHHHHHHH
T ss_pred CCCCCEEEEecCCcHhHHHHHHHc---CCEEEEcccCCCCCcch-hHHhhhccCCCEEEEcCCCCCcCCCCCHHHHHHHH
Confidence 8 999999999999987765554 99999999887645555 777888888999999999999999999 66777
Q ss_pred HHhhhcCCEEEEecccccCcc---cccCC---------CCCccEEEEccccccCCCc--eEEEEEecCCCCccccccccC
Q psy15216 1556 ELCRSKGVIFHCDAAQAVGKI---DINIQ---------NYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGG 1621 (2602)
Q Consensus 1556 ~ia~~~gi~vivD~a~~~g~~---~~~l~---------~~~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~~g~ 1621 (2602)
++|++||+++|+|++|+.... +.++. ..+.++++.|+||.+|++| +||++.++++++.+....
T Consensus 181 ~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~--- 257 (376)
T 3ezs_A 181 KLALKHDFILINDECYSEIYENTPPPSLLEACMLAGNEAFKNVLVIHSLSKRSSAPGLRSGFIAGDSRLLEKYKAFR--- 257 (376)
T ss_dssp HHHHHHTCEEEEECTTTTCBSSSCCCCHHHHHHHTTCTTCTTEEEEEESTTTTTCGGGCCEEEEECHHHHHHHHHHH---
T ss_pred HHHHHcCcEEEEEccchhhccCCCCCCHHHccccccccccCcEEEEecchhccCCccceeEEEeeCHHHHHHHHHHH---
Confidence 789999999999999975322 11111 3567799999999888777 799999877666654432
Q ss_pred CccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecCCcHH
Q psy15216 1622 GHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGES 1701 (2602)
Q Consensus 1622 ~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~ 1701 (2602)
....++.+...+.++.++++. ...+++.++++.++++++.+.|. ++. .+ . ......+.++ +..+
T Consensus 258 ----~~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~l~~~l~----~~~--~~-~--~~~~~~~~~~--~~~~ 321 (376)
T 3ezs_A 258 ----AYLGYTSANAIQKASEAAWLD-DRHAEFFRNIYANNLKLARKIFK----NTL--IY-P--YSFYVYLPVQ--NGEN 321 (376)
T ss_dssp ----TTTCCCCCHHHHHHHHHHHHC-SHHHHHHHHHHHHHHHHHHHHST----TCC--CC-S--BSSEEEEECS--CHHH
T ss_pred ----hhhcCCCChHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHhc----CCC--CC-C--cceEEEEECC--CHHH
Confidence 122346677777777777764 23467788888888888888885 222 11 1 1222223333 5566
Q ss_pred HHHhc---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1702 LLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1702 ~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
+...| +||.+++|..|... ....+++||+++. |.+++++++++|++.
T Consensus 322 ~~~~l~~~~gi~v~~g~~~~~~---------------~~~~~~iRis~~~--~~~~i~~~l~~l~~~ 371 (376)
T 3ezs_A 322 FAKTLYQNEGIITLPALYLGRN---------------RIGADYVRLALVY--DTPLLEKPLEIIETY 371 (376)
T ss_dssp HHHHHHHHHCCBCEEGGGGCST---------------TTTTTEEEEECCS--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCEEEeCcHHhCCC---------------CCCCCeEEEEEcC--CHHHHHHHHHHHHHH
Confidence 66555 59999999888631 0123899999984 999999999999873
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.8e-21 Score=257.44 Aligned_cols=316 Identities=15% Similarity=0.113 Sum_probs=224.1
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHh----CCCCCcEEEeCCHHHHHHHHHHhcccccc
Q psy15216 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI----YADPREIIWTSGATESNNLAIKGAAHFYK 83 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~----g~~~~~Iv~t~g~T~al~~~~~~l~~~~~ 83 (2602)
+.|+.+.+++.+.+.... +.+. .+.++ ......++++++++++ ++++++|++|+|+++++.++ .++.
T Consensus 69 ~~~~~v~~a~~~~~~~~~-~~~~-~~~y~--~~~g~~~l~~~ia~~~~~~~~~~~~~i~~t~G~~~al~~l-~~l~---- 139 (432)
T 3ei9_A 69 PIPEVITSAMAKKAHELS-TIEG-YSGYG--AEQGAKPLRAAIAKTFYGGLGIGDDDVFVSDGAKCDISRL-QVMF---- 139 (432)
T ss_dssp CCCHHHHHHHHHHHHHTT-STTT-CCCCC--CTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCHHHHHHHH-HHHH----
T ss_pred CCCHHHHHHHHHHHhccc-ccCC-ccCCC--CCCCCHHHHHHHHHHHHccCCCCcceEEECCChHHHHHHH-HHHc----
Confidence 788999999999887532 1111 11111 1123456778888876 78888999999999999974 5655
Q ss_pred cCCCEEEEcCCCCcccHHHHHHHHhCC---------cEEEEeccCCC--CccChHHHHhhccCCceEEEEecccCccccc
Q psy15216 84 KRGKHIITVQTEHKSVLDSIRKLENDG---------FRVTYLKPKNN--GLITLSQLEEKICSDTILVSVMLVNNEIGVI 152 (2602)
Q Consensus 84 ~~gd~Vlv~~~~~~s~~~~~~~~~~~G---------~~v~~v~~~~~--~~ld~e~l~~~i~~~tklv~i~~~~npTG~~ 152 (2602)
++||.|+++.|.|+++...+..+...| .+++.++.++. ...|++. .++++++++++|+||||.+
T Consensus 140 ~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~v~l~~p~NPtG~~ 214 (432)
T 3ei9_A 140 GSNVTIAVQDPSYPAYVDSSVIMGQTGQFNTDVQKYGNIEYMRCTPENGFFPDLST-----VGRTDIIFFCSPNNPTGAA 214 (432)
T ss_dssp CTTCCEEEEESCCTHHHHHHHHHTCSCCEETTTTEETTCEEEECCGGGTTSCCGGG-----CCCCSEEEEESSCTTTCCC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHcCCcccccccccccCceEEeccCcccCCcCChhh-----CCCCCEEEEeCCCCCCCCC
Confidence 799999999999999998888774433 35777776643 2344332 4689999999999999999
Q ss_pred cc---HHHHHHHHHhcCCEEEEeccccccc---ccccCCC----CCccEEEeccccccCCCC--cEEEEEecCCC-----
Q psy15216 153 QP---ILEIGELCRSKGVIFHCDAAQAVGK---IDINIQN----YKVDLMSFSAHKIYGPKG--IGALYIRRNPR----- 215 (2602)
Q Consensus 153 ~~---l~~I~~la~~~g~~livD~a~a~g~---~~~dl~~----~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~----- 215 (2602)
+| +++|+++|++||+++|+|++|+... .+..+.. .+.++++.|+||.+|++| +||++++++++
T Consensus 215 ~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~r~G~~~~~~~~~~~~~~ 294 (432)
T 3ei9_A 215 ATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNPRSIFEIPGAEEVAMETASFSNYAGFTGVRLGWTVIPKKLLYSDGF 294 (432)
T ss_dssp CCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSCCSSGGGSTTGGGTEEEEEESHHHHCTTTTCCEEEECCTTCBCTTSC
T ss_pred CCHHHHHHHHHHHHHcCcEEEEccchHhhccCCCCCChhhcCCCCCeEEEEecchhccCCcccceEEEEEChHHhhcchH
Confidence 98 5566777999999999999998432 1222211 235688999999998888 79999998763
Q ss_pred ---CcccceecCCCccccccccCcchhHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCC
Q psy15216 216 ---TRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIP 291 (2602)
Q Consensus 216 ---~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~-~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~ 291 (2602)
+.+.... ....++++.++..++.+++. ....++++..+++.++++++.+.|.+ . ++.+..+.. .
T Consensus 295 ~~~~~~~~~~-------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~---~ 362 (432)
T 3ei9_A 295 PVAKDFNRII-------CTCFNGASNISQAGALACLTPEGLEAMHKVIGFYKENTNIIIDTFTS-L-GYDVYGGKN---A 362 (432)
T ss_dssp BHHHHHHHHH-------HHSCCCSCHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHH-T-TCCEEECSS---S
T ss_pred HHHHHHHHHh-------ccccCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH-C-CceecCCCc---c
Confidence 2222111 11234566666666666664 23356788899999999999999987 3 776664432 2
Q ss_pred ceEEEEEcccChhHHHHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 292 HNLNISFNFIEGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
.++.+.++..+..++...| +||.+++|..|.+. ..+++||++. ++++++++++++|++
T Consensus 363 ~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~-----------------~~~~iRis~~--~~~e~l~~~l~rl~~ 423 (432)
T 3ei9_A 363 PYVWVHFPNQSSWDVFAEILEKTHVVTTPGSGFGPG-----------------GEGFVRVSAF--GHRENILEACRRFKQ 423 (432)
T ss_dssp SEEEEECTTSCHHHHHHHHHHHHCEECEEGGGGCGG-----------------GTTEEEEECC--SCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCHHHHHHHHHHHCCEEEeCchHhCCC-----------------CCCEEEEEec--CCHHHHHHHHHHHHH
Confidence 3445555555566666665 49999999877542 1389999974 599999999999995
|
| >1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.3e-21 Score=253.11 Aligned_cols=332 Identities=14% Similarity=0.068 Sum_probs=232.9
Q ss_pred CCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCC
Q psy15216 7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRG 86 (2602)
Q Consensus 7 ~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~g 86 (2602)
...|+.+++++.+.+...+..+ .+...++|+.+++++|.+ ++++++|+|+|+++++.++. +++|
T Consensus 16 p~~~~~~~~a~~~~~~~~~~~~-----------~~~~~~l~~~la~~~~~~--~~~~~~~gt~al~~~~~~~~---~~~g 79 (393)
T 1mdo_A 16 PAMGAEELAAVKTVLDSGWITT-----------GPKNQELEAAFCRLTGNQ--YAVAVSSATAGMHIALMALG---IGEG 79 (393)
T ss_dssp CCCCHHHHHHHHHHHHHTCCSS-----------SHHHHHHHHHHHHHHCCS--EEEEESCHHHHHHHHHHHTT---CCTT
T ss_pred CCCCHHHHHHHHHHHhcCCcCC-----------ChHHHHHHHHHHHHhCCC--cEEEecChHHHHHHHHHHcC---CCCC
Confidence 3456888999998887532111 135788999999999975 89999999999999999982 2799
Q ss_pred CEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCC-CccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHhc
Q psy15216 87 KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN-GLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSK 165 (2602)
Q Consensus 87 d~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~-~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~~ 165 (2602)
|+|+++.++|+++...+.. .|++++.++++++ +.+|+++|++++++++++|++++ |||.+.|+++|.++|+++
T Consensus 80 d~Vl~~~~~~~~~~~~~~~---~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~~~~---~~G~~~~~~~i~~l~~~~ 153 (393)
T 1mdo_A 80 DEVITPSMTWVSTLNMIVL---LGANPVMVDVDRDTLMVTPEHIEAAITPQTKAIIPVH---YAGAPADLDAIYALGERY 153 (393)
T ss_dssp CEEEEESSSCHHHHHHHHH---TTCEEEEECBCTTTCCBCHHHHHHHCCTTEEEECCBC---GGGCCCCHHHHHHHHHHH
T ss_pred CEEEeCCCccHhHHHHHHH---CCCEEEEEeccCCcCCCCHHHHHHhcCCCceEEEEeC---CCCCcCCHHHHHHHHHHc
Confidence 9999999999998776654 4999999998864 67999999999998999998764 799999999999999999
Q ss_pred CCEEEEecccccccccccCCCCC-ccEEEeccc--cccCCCCcEEEEEe-cCCCCcccceecCCCc-----------ccc
Q psy15216 166 GVIFHCDAAQAVGKIDINIQNYK-VDLMSFSAH--KIYGPKGIGALYIR-RNPRTRIEAQIHGGGH-----------EYG 230 (2602)
Q Consensus 166 g~~livD~a~a~g~~~~dl~~~~-~D~~~~S~~--K~~Gp~G~G~l~~~-~~~~~~l~~~~~g~~~-----------~~~ 230 (2602)
|+++|+|++|+.|... +...++ .|++++|+| |++++..+|+++.+ +++++.+.+....+.. +..
T Consensus 154 ~~~li~D~a~~~g~~~-~~~~~~~~d~~~~S~~k~K~l~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 232 (393)
T 1mdo_A 154 GIPVIEDAAHATGTSY-KGRHIGARGTAIFSFHAIKNITCAEGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQ 232 (393)
T ss_dssp TCCBCEECTTCTTCEE-TTEETTSSSEEEEECCTTSSSCSSSCEEEEESCHHHHHHHHHHTBTTEECC-----------C
T ss_pred CCeEEEECccccCCeE-CCeecCCCCeEEEeCCCCCccccccceEEEeCCHHHHHHHHHHHhcCCcccchhhhccccccc
Confidence 9999999999987543 222234 799999999 76654346888886 5666655543322211 111
Q ss_pred cc---ccC-cchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCC---CCCCceEEEEEc----
Q psy15216 231 LR---SGT-LATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMN---NRIPHNLNISFN---- 299 (2602)
Q Consensus 231 ~~---~gt-~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~---~~~~~~~~~~~~---- 299 (2602)
+. .|+ .....+.+. .++.. ...+++..++.+++++++.+.|.+ .+ ++++..+. .....++.+.++
T Consensus 233 ~~~~~~g~~~~~~~~~~a-~~~~~-l~~~~~~~~~~~~~~~~l~~~L~~-~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~ 308 (393)
T 1mdo_A 233 AEVLAPGYKYNLPDLNAA-IALAQ-LQKLDALNARRAAIAAQYHQAMAD-LP-FQPLSLPSWEHIHAWHLFIIRVDEARC 308 (393)
T ss_dssp CEESSCCCBCCCCHHHHH-HHHHH-HHTHHHHHHHHHHHHHHHHHHHHT-SS-CEECCCCSSCEECCCSCEEEECCHHHH
T ss_pred ccccccCccCCCCHHHHH-HHHHH-HHHHHHHHHHHHHHHHHHHHHHhc-CC-cccccCCCCCCCceeEEEEEEeccccc
Confidence 11 122 111222211 22222 234667788888899999999987 54 77654321 112334556665
Q ss_pred ccChhHHHHHh--CCeEEcccccCCCCCCChHHHHHHc---CCC--ccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 300 FIEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRAL---GCN--DELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 300 ~~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~---g~~--~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
..+..++.+.| +||.++++..|... .+.+.. .+ .+. +....+++|++++.++|++|+++++++|++
T Consensus 309 ~~~~~~l~~~l~~~gi~v~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~ 381 (393)
T 1mdo_A 309 GITRDALMASLKTKGIGTGLHFRAAHT--QKYYRE-RFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQ 381 (393)
T ss_dssp SSCHHHHHHHHHHTTBCCBCCCCCGGG--SHHHHH-HSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHhCCCCcccccCcccc--Chhhhc-cCCccCChhHHHHHhCEEEecCCCCCCHHHHHHHHHHHHH
Confidence 35667777777 79999988766321 122211 00 010 001236899999999999999999999985
|
| >1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-21 Score=254.51 Aligned_cols=330 Identities=13% Similarity=0.088 Sum_probs=223.3
Q ss_pred CHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCEE
Q psy15216 1406 DPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHI 1485 (2602)
Q Consensus 1406 ~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~V 1485 (2602)
++.+.+++.+.++... .+ +. ......++|+.+++++|.+ +.|+++ ++|+|+++++.++. +++||+|
T Consensus 16 ~~~~~~a~~~~l~~~~--~~---~~----~~~~~~~l~~~la~~~~~~-~~i~~~-sGt~al~~~l~~l~---~~~gd~V 81 (388)
T 1b9h_A 16 DDAERNGLVRALEQGQ--WW---RM----GGDEVNSFEREFAAHHGAA-HALAVT-NGTHALELALQVMG---VGPGTEV 81 (388)
T ss_dssp CHHHHHHHHHHHHTSC--CB---TT----TCSHHHHHHHHHHHHTTCS-EEEEES-CHHHHHHHHHHHTT---CCTTCEE
T ss_pred CHHHHHHHHHHHHcCC--ee---ec----CCHHHHHHHHHHHHHhCCC-eEEEeC-CHHHHHHHHHHHcC---CCCcCEE
Confidence 4789999999887521 00 11 1134678999999999975 445555 55999999999982 2799999
Q ss_pred EEcCCCCcchHHHHHHHHhCCcEEEEeccCCC-CCcChhHHHhhccCCceEEEEeccccccccccChHHHHHHhhhcCCE
Q psy15216 1486 ITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN-GLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVI 1564 (2602)
Q Consensus 1486 lv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~-~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~~ia~~~gi~ 1564 (2602)
+++.++|+++...+... |++++.++++++ +.+|+++|+++++++|++|+ |+||||.+.|+++|.++|++||++
T Consensus 82 i~~~~~~~~~~~~~~~~---g~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~v~---~~n~tG~~~~l~~i~~la~~~~~~ 155 (388)
T 1b9h_A 82 IVPAFTFISSSQAAQRL---GAVTVPVDVDAATYNLDPEAVAAAVTPRTKVIM---PVHMAGLMADMDALAKISADTGVP 155 (388)
T ss_dssp EEESSSCTHHHHHHHHT---TCEEEEECBCTTTCCBCHHHHHHHCCTTEEEEC---CBCGGGCCCCHHHHHHHHHHHTCC
T ss_pred EECCCccHHHHHHHHHc---CCEEEEEecCCCcCCCCHHHHHHhcCcCceEEE---EeCCccCcCCHHHHHHHHHHcCCE
Confidence 99999999998766544 999999999864 78999999999999998877 889999999999999999999999
Q ss_pred EEEecccccCccc--ccCCCCC-ccEEEEcccccc-CCCceEEEEEecCCC---CccccccccCCc---ccc---CCCCC
Q psy15216 1565 FHCDAAQAVGKID--INIQNYK-VDLMSFSAHKIY-GPKGIGALYIRRNPR---TRIEAQIHGGGH---EYG---LRSGT 1631 (2602)
Q Consensus 1565 vivD~a~~~g~~~--~~l~~~~-~D~~v~S~~K~~-gp~G~G~l~~~~~~~---~~l~~~~~g~~~---~~~---~~~gt 1631 (2602)
+|+|++|+.|... .++..++ +++.++|.||.+ |+. +|+++.+++.+ +.+.... +++. ... ...|+
T Consensus 156 li~D~a~~~g~~~~~~~~~~~~~i~~~S~s~~K~l~g~~-~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~ 233 (388)
T 1b9h_A 156 LLQDAAHAHGARWQGKRVGELDSIATFSFQNGKLMTAGE-GGAVVFPDGETEKYETAFLRH-SCGRPRDDRRYFHKIAGS 233 (388)
T ss_dssp BCEECTTCTTCEETTEEGGGSSSCEEEECCTTSSSCSSS-CEEEEECTTCHHHHHHHHHHT-BTTCCTTCSSCCCCSCCC
T ss_pred EEEecchhcCCccCCeecccccceEEEEccCCCcccCCC-eEEEEECCHHHHHHHHHHHHH-hCCCCccCccceeecccc
Confidence 9999999987644 3333444 344444455754 444 69999887533 3332221 1111 111 12233
Q ss_pred ---cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCC---CCCceEEEEEecC---CcHHH
Q psy15216 1632 ---LATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNN---RIPHNLNISFNFI---EGESL 1702 (2602)
Q Consensus 1632 ---~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~---~~~~~~~~~~~~~---~~~~~ 1702 (2602)
.+....+++..++ ..+++..++++++++++.+.|.+ ++++.+..+... ..+....+.++.. +..++
T Consensus 234 ~~~~~~~~~a~~~~~~----~~l~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 308 (388)
T 1b9h_A 234 NMRLNEFSASVLRAQL----ARLDEQIAVRDERWTLLSRLLGA-IDGVVPQGGDVRADRNSHYMAMFRIPGLTEERRNAL 308 (388)
T ss_dssp BCBCBHHHHHHHHHHH----TTHHHHHHHHHHHHHHHHHHHHT-STTCEECCCCTTCCBCCCSEEEEECTTCCHHHHHHH
T ss_pred cCCcCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcc-CCCccccCCCcCCCccceEEEEEEeCCcCcccHHHH
Confidence 2333333322222 33556777888889999999987 678887653221 1234445555532 34566
Q ss_pred HHhc--CCEEEccccccCCCCCChhHHH------------HHcCCCccccCCeEEEecCCCC-CHHHHHHHHHHHHH
Q psy15216 1703 LMAI--KDIAVSSGSACTSASLEPSYVL------------RALGCNDELAHSSIRFTIGRFT-TEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1703 ~~~L--~gI~v~~g~~~~~~~~~~~~~~------------~~~~~~~~~~~~~iRls~~~~~-t~edid~li~~L~~ 1764 (2602)
...| +||.++++.. +.+..+.+.. ..++.......+.|||+++..+ |.+||++++++|++
T Consensus 309 ~~~L~~~gI~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~t~edi~~~~~~l~~ 383 (388)
T 1b9h_A 309 VDRLVEAGLPAFAAFR--AIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPELHATAEIIAD 383 (388)
T ss_dssp HHHHHHTTCCEEECCC--CGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCcccccC--ccccChHhHhcCCCcccccccccCCHHHHHHHhCeEEecCCCCCCCHHHHHHHHHHHHH
Confidence 6666 7999887543 2112222211 0122222223468999999999 99999999999987
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=4.4e-22 Score=262.45 Aligned_cols=316 Identities=12% Similarity=0.074 Sum_probs=231.3
Q ss_pred CCHHHHHHHHHHHhhc----cCCCCCccchhHHHHHHHHHHHHHHHHHHh----C---CCCCcEEEeCCHHHHHHHHHHh
Q psy15216 1405 IDPRVVDKMIPYLRVQ----FGNPASRNHIYGWTAEKAIEKARNEVAQLI----Y---ADPREIIWTSGATESNNLAIKG 1473 (2602)
Q Consensus 1405 ~~~~v~eal~~~l~~~----~~np~~~~~~~~~~~~~~~~~lr~~ia~~~----g---~~~~~iv~t~gaT~al~~al~~ 1473 (2602)
.++.+.+++.+.++.. ..++.. ....++|+++++++ | +++++|++|+|+++|+..++.+
T Consensus 59 ~~~~v~~a~~~~~~~~~~~~~~y~~~----------~g~~~lr~~la~~l~~~~g~~~~~~~~v~~t~G~~~al~~~~~~ 128 (425)
T 1vp4_A 59 PRKELAEIAKEIIEKEYHYTLQYSTT----------EGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKL 128 (425)
T ss_dssp CHHHHHHHHHHHHHHSHHHHTSCCCT----------TCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhcchhhcCCCCC----------CCCHHHHHHHHHHHHhccCCCCCCcccEEEeccHHHHHHHHHHH
Confidence 4567888888887642 222221 11356777777777 8 6678999999999999999999
Q ss_pred hhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccC--------CceEE-EEeccccc
Q psy15216 1474 AAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS--------DTILV-SVMLVNNE 1544 (2602)
Q Consensus 1474 l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~--------~t~lv-~l~~~~n~ 1544 (2602)
+. ++||+|+++.|+|+++...+.. .|++++.++.++++ +|+++|++++++ ++++| ++++++||
T Consensus 129 l~----~~gd~Vl~~~p~y~~~~~~~~~---~g~~~~~v~~~~~~-~d~~~l~~~l~~~~~~~~~~~~~~v~~~~~~~np 200 (425)
T 1vp4_A 129 FL----DDESYCVLDDPAYLGAINAFRQ---YLANFVVVPLEDDG-MDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNP 200 (425)
T ss_dssp HC----CTTCEEEEEESCCHHHHHHHHT---TTCEEEEEEEETTE-ECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTT
T ss_pred hC----CCCCEEEEeCCCcHHHHHHHHH---cCCEEEEeccCCCC-CCHHHHHHHHHhhhhcccCCCceEEEECCCCCCC
Confidence 86 7999999999999998766544 49999999887654 899999999976 78887 58999999
Q ss_pred cccccC---hHHHHHHhhhcCCEEEEecccccCcc----cccC---CCCCccEEEEccccccCCCc--eEEEEEecCCCC
Q psy15216 1545 IGVIQP---ILEIGELCRSKGVIFHCDAAQAVGKI----DINI---QNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRT 1612 (2602)
Q Consensus 1545 tG~~~~---l~~I~~ia~~~gi~vivD~a~~~g~~----~~~l---~~~~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~ 1612 (2602)
||.++| +++|.++|++||+++|+|++|+.... +.++ ...+.++++.|+||.+| +| +||+++++++++
T Consensus 201 tG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~-~G~r~G~~~~~~~~~~ 279 (425)
T 1vp4_A 201 AGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSKVLA-PGLRIGMVAGSKEFIR 279 (425)
T ss_dssp TCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEESTTTTC-GGGCEEEEECCHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHHhCCCCCEEEEeccccccc-cccceEEEeeCHHHHH
Confidence 999998 56889999999999999999976321 1222 22345788999999888 77 799999877666
Q ss_pred ccccccccCCccccCCCCCcchhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhcCC---cEEEeCCCCCCCC
Q psy15216 1613 RIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLA--RIEMKEELKRILFLQKRLYNGLMESIE---EIYINGDMNNRIP 1687 (2602)
Q Consensus 1613 ~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~--~~~~~~~~~~~~~l~~~l~~~L~~~~~---gl~i~~~~~~~~~ 1687 (2602)
.+...... ...+.+...+.++.++|+.. ...+++.++++.++++++.+.|.+..+ ++.+..+.. .
T Consensus 280 ~l~~~~~~-------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~---g 349 (425)
T 1vp4_A 280 KIVQAKQS-------ADLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKWVKSEG---G 349 (425)
T ss_dssp HHHHHHHH-------HHSSCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHSTTSTTCEECCCSB---S
T ss_pred HHHHHhhh-------hcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCc---c
Confidence 55432211 11234666666676777642 455678888888999999999987444 577653322 2
Q ss_pred ceEEEEEec-CCcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1688 HNLNISFNF-IEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1688 ~~~~~~~~~-~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
....+.++. .+..++...| +||.+++|..|... ....+++||+++.. +++++++++++|++
T Consensus 350 ~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~f~~~---------------~~~~~~iRis~~~~-~~e~i~~~l~~l~~ 413 (425)
T 1vp4_A 350 LFIWLTLPEGFDTWEMFEYAKRKKVFYVPGRVFKVY---------------DEPSPSMRLSFCLP-PDEKIVEGIKRLRE 413 (425)
T ss_dssp SEEEEECCTTCCTTTTHHHHHHHTEECEEGGGGCTT---------------CCCCSEEEEECSSS-CHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHCCCEEECchhhcCC---------------CCCCCeEEEEeCCC-CHHHHHHHHHHHHH
Confidence 233444442 3445555555 69999999877532 01137899999875 89999999999997
Q ss_pred h
Q psy15216 1765 K 1765 (2602)
Q Consensus 1765 ~ 1765 (2602)
.
T Consensus 414 ~ 414 (425)
T 1vp4_A 414 V 414 (425)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-21 Score=257.09 Aligned_cols=355 Identities=13% Similarity=0.167 Sum_probs=227.5
Q ss_pred CcccHHHHHHHHHhcCCCccccceeeeeceeeeccCCCCCCCHHHHHHHHHHHhhcc--CCCCCccchhHHHHHHHHHHH
Q psy15216 1365 SPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDATTPIDPRVVDKMIPYLRVQF--GNPASRNHIYGWTAEKAIEKA 1442 (2602)
Q Consensus 1365 ~~~~~~~v~~aL~~~g~~~~~~ei~~iP~~~v~L~~~~~~~~~~v~eal~~~l~~~~--~np~~~~~~~~~~~~~~~~~l 1442 (2602)
+|+-|..+.+..+.+ ...+.++|.+ ...++.+++++...+.+.+ +||++..+........+...+
T Consensus 39 d~~~~~~~~~e~~rq-----~~~i~lias~--------n~~~~~V~eA~~~~l~~~y~~G~~g~r~~~G~~~~~~lE~~a 105 (490)
T 2a7v_A 39 DPEMWELLQREKDRQ-----CRGLELIASE--------NFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLC 105 (490)
T ss_dssp CHHHHHHHHHHHHHH-----HHSEECCTTC--------CCCCHHHHHHHTSGGGTCCCCC------------CTHHHHHH
T ss_pred CHHHHHHHHHHHHHH-----HcCceEECCC--------CCCCHHHHHHHHHHHcCCCccCCCcccccCccHHHHHHHHHH
Confidence 555555555544332 1345555533 3568899999999887765 678763333222223455577
Q ss_pred HHHHHHHhCCCCCc---EEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHH-----HHHhCCcE--EEEe
Q psy15216 1443 RNEVAQLIYADPRE---IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIR-----KLENDGFR--VTYL 1512 (2602)
Q Consensus 1443 r~~ia~~~g~~~~~---iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~-----~~~~~G~~--v~~v 1512 (2602)
++++++++|++++. .++++|+|+|++.++.++. +|||+|+++++.|.++..... .+...|.. +..+
T Consensus 106 ~~~~a~l~g~~~~~~~~~v~~~sGt~An~~al~al~----~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~ 181 (490)
T 2a7v_A 106 QRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALL----QPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPY 181 (490)
T ss_dssp HHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHC----CSCEECCC-------------------------------C
T ss_pred HHHHHHHcCCCcccCceEEeCCchHHHHHHHHHHHc----CCCCEecccCccccccccchhhhcchhHHHcCCeEEEEec
Confidence 89999999998753 3566689999999999987 899999999999977543211 11122443 3444
Q ss_pred ccC-CCCCcChhHHHhhcc-CCceEEEEeccccccccccChHHHHHHhhhcCCEEEEecccccCcc-----cccCCCCCc
Q psy15216 1513 KPK-NNGLITLSQLEEKIC-SDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKI-----DINIQNYKV 1585 (2602)
Q Consensus 1513 ~~~-~~~~id~d~l~~~i~-~~t~lv~l~~~~n~tG~~~~l~~I~~ia~~~gi~vivD~a~~~g~~-----~~~l~~~~~ 1585 (2602)
+++ .++.+|+++|++++. .++++|+++.++|| ...|+++|.++|++||+++++|++|+.|.+ +.++. ++
T Consensus 182 ~vd~~~~~iD~d~le~~l~~~~~klIi~~~s~~~--~~~dl~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~~~~--~a 257 (490)
T 2a7v_A 182 KLNPKTGLIDYNQLALTARLFRPRLIIAGTSAYA--RLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFK--HA 257 (490)
T ss_dssp CBCTTTCSBCHHHHHHHHHHHCCSEEEECCSSCC--SCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGG--TC
T ss_pred ccccccCCcCHHHHHHHHhhcCCcEEEEcCCCCC--CcccHHHHHHHHHHcCCEEEEccccccccccCCcCCCCCC--CC
Confidence 455 368899999999996 47899988877765 567999999999999999999999976543 22232 58
Q ss_pred cEEEEcccc-ccCCCceEEEEEecCCC---------------CccccccccCCccccCCCCCcchhHHHHHHHHHHHHH-
Q psy15216 1586 DLMSFSAHK-IYGPKGIGALYIRRNPR---------------TRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLAR- 1648 (2602)
Q Consensus 1586 D~~v~S~~K-~~gp~G~G~l~~~~~~~---------------~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~- 1648 (2602)
|++++|+|| +.||.| |++++++++. +.++...+.+ ..|+++.+.++++.+|+....
T Consensus 258 Div~~S~hK~l~Gp~G-G~i~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~g------~qggp~~~~iaAla~Al~~~~~ 330 (490)
T 2a7v_A 258 DIVTTTTHKTLRGARS-GLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPS------LQGGPHNHAIAAVAVALKQACT 330 (490)
T ss_dssp SEEEEESSGGGCSCSC-EEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTT------TCCSCCHHHHHHHHHHHHHHHS
T ss_pred CEEEECCcccCccccc-hheeeccchhcccccccchhhHHHHHHHHHHhccc------CCCCchHHHHHHHHHHHHHHhh
Confidence 999999999 668987 9999987521 1222222111 236688888999988887543
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEec--CCcHHHHHhc--CCEEEccccccCCCCCCh
Q psy15216 1649 IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF--IEGESLLMAI--KDIAVSSGSACTSASLEP 1724 (2602)
Q Consensus 1649 ~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~L--~gI~v~~g~~~~~~~~~~ 1724 (2602)
..+++..++..++++++.+.|.+ .|+.+..... ..++..+.+.. .+..++...| .||.+..+..+...
T Consensus 331 ~~~~~~~~~~~~na~~L~~~L~~--~G~~v~~~~t--~t~lv~vdl~~~g~~~~~~~~~L~~~GI~v~~~~~p~d~---- 402 (490)
T 2a7v_A 331 PMFREYSLQVLKNARAMADALLE--RGYSLVSGGT--DNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDR---- 402 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--TTCEEGGGSC--SSSEEEEECTTTTCCHHHHHHHHHHTTEECEEECCTTCC----
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH--cCcEEecCCC--CCeEEEEEeCCCCCCHHHHHHHHHhCCeEEecCccCCCC----
Confidence 45688889999999999999988 4888864221 12444444432 3455555555 79998866443321
Q ss_pred hHHHHHcCCCccccCCeEEEecCC----CCCHHHHHHHHHHHHHh
Q psy15216 1725 SYVLRALGCNDELAHSSIRFTIGR----FTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1725 ~~~~~~~~~~~~~~~~~iRls~~~----~~t~edid~li~~L~~~ 1765 (2602)
.....+.||++... ..+++|+++++++|.+.
T Consensus 403 ----------~p~~~~~iRig~~a~t~~g~~~~d~~~~~~~i~~~ 437 (490)
T 2a7v_A 403 ----------SAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEG 437 (490)
T ss_dssp ----------CSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred ----------CCCCCCceEecccccccCCCCHHHHHHHHHHHHHH
Confidence 01123779997533 45889999999999874
|
| >2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.1e-21 Score=252.07 Aligned_cols=328 Identities=15% Similarity=0.107 Sum_probs=229.7
Q ss_pred CHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCEE
Q psy15216 10 DPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHI 89 (2602)
Q Consensus 10 p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~V 89 (2602)
++.+.+++.+.+... .+..+ ....++++.+++++|.+ ++++++|+|+|+..++.++. +++||+|
T Consensus 43 ~~~v~~a~~~~~~~~-------~y~~~----~~~~~l~~~la~~~~~~--~~v~~~~Gt~a~~~~l~~~~---~~~gd~v 106 (399)
T 2oga_A 43 RAETDAAIARVLDSG-------RYLLG----PELEGFEAEFAAYCETD--HAVGVNSGMDALQLALRGLG---IGPGDEV 106 (399)
T ss_dssp HHHHHHHHHHHHHHT-------CCSSS----HHHHHHHHHHHHHTTSS--EEEEESCHHHHHHHHHHHTT---CCTTCEE
T ss_pred CHHHHHHHHHHHhcC-------CCCCc----hhHHHHHHHHHHHHCCC--eEEEecCHHHHHHHHHHHhC---CCCcCEE
Confidence 478888888887641 11111 35688999999999976 68888999999999999983 2799999
Q ss_pred EEcCCCCcccHHHHHHHHhCCcEEEEeccCC-CCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHhcCCE
Q psy15216 90 ITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVI 168 (2602)
Q Consensus 90 lv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~-~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~~g~~ 168 (2602)
+++.++|+++...+.. .|++++.++.++ ++.+|+++|++++++++++|+ ++||||.+.|+++|.++|+++|++
T Consensus 107 l~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~---~~n~tG~~~~l~~i~~l~~~~~~~ 180 (399)
T 2oga_A 107 IVPSHTYIASWLAVSA---TGATPVPVEPHEDHPTLDPLLVEKAITPRTRALL---PVHLYGHPADMDALRELADRHGLH 180 (399)
T ss_dssp EEESSSCTHHHHHHHH---TTCEEEEECBCSSSSSBCHHHHHHHCCTTEEEEC---CBCGGGCCCCHHHHHHHHHHHTCE
T ss_pred EECCCccHHHHHHHHH---CCCEEEEEecCCCCCCcCHHHHHHhcCCCCeEEE---EeCCcCCccCHHHHHHHHHHcCCE
Confidence 9999999997766654 499999999876 578999999999998999887 467899999999999999999999
Q ss_pred EEEecccccccccccCCCCC--ccEEEecc--ccccCCCC-cEEEEEe-cCCCCcccceecCCCcccccc------ccCc
Q psy15216 169 FHCDAAQAVGKIDINIQNYK--VDLMSFSA--HKIYGPKG-IGALYIR-RNPRTRIEAQIHGGGHEYGLR------SGTL 236 (2602)
Q Consensus 169 livD~a~a~g~~~~dl~~~~--~D~~~~S~--~K~~Gp~G-~G~l~~~-~~~~~~l~~~~~g~~~~~~~~------~gt~ 236 (2602)
+|+|++|+.+... +...++ .|++++|+ +|++|++| +|+++.+ +++++.+.+....+... .+. .+++
T Consensus 181 li~Dea~~~g~~~-~~~~~~~~~di~~~S~~~sK~~~~~G~~g~~~~~~~~~~~~l~~~~~~g~~~-~~~~~~~g~~~~~ 258 (399)
T 2oga_A 181 IVEDAAQAHGARY-RGRRIGAGSSVAAFSFYPGKNLGCFGDGGAVVTGDPELAERLRMLRNYGSRQ-KYSHETKGTNSRL 258 (399)
T ss_dssp ECEECTTCTTCEE-TTEETTCTTCEEEEECCTTSSSCCSSCCEEEEESCHHHHHHHHHHHBTTCSS-TTCCCSCCCBCCC
T ss_pred EEEECcccccCcc-CCeecccccCEEEEeCCCCccCCcCCceEEEEeCCHHHHHHHHHHHhcCccc-cccccccccCCCc
Confidence 9999999887542 332233 68999999 59888865 6788876 56666665543322111 111 1234
Q ss_pred chhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcccChhHHHHHh--CCeE
Q psy15216 237 ATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDIA 314 (2602)
Q Consensus 237 ~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~ 314 (2602)
+..+.+++.++++. ++...++..++++++.+.|.+ ++++++...++...+....+.+...+..++...| +||.
T Consensus 259 ~~~~~a~~~~~l~~----~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~ 333 (399)
T 2oga_A 259 DEMQAAVLRIRLAH----LDSWNGRRSALAAEYLSGLAG-LPGIGLPVTAPDTDPVWHLFTVRTERRDELRSHLDARGID 333 (399)
T ss_dssp CHHHHHHHHHHHHT----HHHHHHHHHHHHHHHHHHTTT-CTTCBCCCCCTTEECCCSSEEEECSSHHHHHHHHHHTTBC
T ss_pred CHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhcc-CCCccccCCCCCCcceeEEEEEECCCHHHHHHHHHHCCCc
Confidence 45555555455542 345667778888899999977 6777665333221111112333334666777777 7999
Q ss_pred EcccccCCCCCCChHHHHHHcCCCccC-------CCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 315 VSSGSACTSASLEPSYVLRALGCNDEL-------AHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 315 v~~g~~~~~~~~~~~~~~~~~g~~~~~-------~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
++++.. .+.+.. ..+..++..... ..++|||+++.++|++|+++++++|++.
T Consensus 334 v~~~~~-~~~~~~--~~~~~~~~~~~~~p~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~ 392 (399)
T 2oga_A 334 TLTHYP-VPVHLS--PAYAGEAPPEGSLPRAESFARQVLSLPIGPHLERPQALRVIDAVREW 392 (399)
T ss_dssp CBCSCS-SCGGGS--HHHHTTSCCTTSCHHHHHHHHHEEEECCSTTCCHHHHHHHHHHHHHH
T ss_pred eecCCC-Cccccc--hhhcccCCCCCCChhHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHH
Confidence 886432 111111 122333332110 1268999999999999999999999864
|
| >2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=7.9e-22 Score=259.52 Aligned_cols=343 Identities=12% Similarity=0.073 Sum_probs=234.6
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCC
Q psy15216 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK 87 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd 87 (2602)
+.|+.+.+++.+.+.... .....+..+ .....+++++.+++++|++ ++++++|+|+|+++++.++. +++||
T Consensus 13 ~~~~~~~~a~~~~~~~~~--~~~~~~~~g--~~~l~~~l~~~la~~~g~~--~~i~~~~gt~al~~~~~~~~---~~~gd 83 (418)
T 2c81_A 13 QHSDRTRRKIEEVFQSNR--WAISGYWTG--EESMERKFAKAFADFNGVP--YCVPTTSGSTALMLALEALG---IGEGD 83 (418)
T ss_dssp CCCHHHHHHHHHHHHHTC--CSTTSBCCS--SCCHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHTT---CCTTC
T ss_pred CCCHHHHHHHHHHHhcCC--ccccCcccC--CHHHHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHcC---CCCcC
Confidence 558999999999987631 110011111 1335788999999999986 67888889999999999983 27999
Q ss_pred EEEEcCCCCcccHHHHHHHHhCCcEEEEeccCC-CCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHhcC
Q psy15216 88 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKG 166 (2602)
Q Consensus 88 ~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~-~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~~g 166 (2602)
+|+++.++|+++...+... |++++.+++++ ++.+|+++|++++++++++|+++ ||||...|+++|.++|++||
T Consensus 84 ~Vl~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~~~---~~~G~~~~~~~i~~~~~~~~ 157 (418)
T 2c81_A 84 EVIVPSLTWIATATAVLNV---NALPVFVDVEADTYCIDPQLIKSAITDKTKAIIPV---HLFGSMANMDEINEIAQEHN 157 (418)
T ss_dssp EEEEESSSCTHHHHHHHHT---TCEEEEECBCTTTCSBCHHHHGGGCCTTEEEECCB---CCTTCCCCHHHHHHHHHHTT
T ss_pred EEEECCCccHhHHHHHHHc---CCEEEEEecCCCCCCcCHHHHHHhhCCCCeEEEEe---CCcCCcccHHHHHHHHHHCC
Confidence 9999999999998777654 99999999886 68899999999999999998875 47999999999999999999
Q ss_pred CEEEEecccccccc-c-ccCCCCCccEEEecc--ccccCCCCcEEEEEe-cCCCCcccceecCCCccc--------ccc-
Q psy15216 167 VIFHCDAAQAVGKI-D-INIQNYKVDLMSFSA--HKIYGPKGIGALYIR-RNPRTRIEAQIHGGGHEY--------GLR- 232 (2602)
Q Consensus 167 ~~livD~a~a~g~~-~-~dl~~~~~D~~~~S~--~K~~Gp~G~G~l~~~-~~~~~~l~~~~~g~~~~~--------~~~- 232 (2602)
+++|+|++|+.+.. . ..+..+ .|+.++|+ ||++|+..+|+++.+ +++++.+.+...++.... .+.
T Consensus 158 ~~li~D~a~~~~~~~~~~~~~~~-~~~~~~s~s~~K~~~~g~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (418)
T 2c81_A 158 LFVIEDCAQSHGSVWNNQRAGTI-GDIGAFSCQQGKVLTAGEGGIIVTKNPRLFELIQQLRADSRVYCDDSSELMHGDMQ 236 (418)
T ss_dssp CEEEEECTTCTTCEETTEETTSS-SSEEEEECCTTSSSCSSSCEEEEESCHHHHHHHHHHHBTTEEECSCGGGCCTTCBS
T ss_pred CEEEEECcccccCccCCEecccc-cceEEEeccCCcccCCCCeEEEEECCHHHHHHHHHHHHhCccccccccccccchhh
Confidence 99999999998763 1 112222 25666666 998877337888885 566666654433222111 111
Q ss_pred -ccCcchhH----HHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCC---CCCceEEEEEc----
Q psy15216 233 -SGTLATHQ----IVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNN---RIPHNLNISFN---- 299 (2602)
Q Consensus 233 -~gt~~~~~----~~al~~al~-~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~---~~~~~~~~~~~---- 299 (2602)
.+++...+ +..+.+++. ....++++..++.+++++++.+.|.+ ++++++..++.. ..+..+.+.++
T Consensus 237 ~~~~~~~~g~~~~~~~~~aa~~~~~l~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (418)
T 2c81_A 237 LVKKGDIQGSNYCLSEFQSAILLDQLQELDDKNAIREKNAMFLNDALSK-IDGIKVMKRPPQVSRQTYYGYVFRFDPVKF 315 (418)
T ss_dssp EEECCSSCCCBCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTT-STTEEECCCCTTEEECCCSEEEEEECGGGT
T ss_pred ccccccccCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCcccCCCCCCCcccccEEEEEEEccccc
Confidence 11122211 111222332 12245678888888999999999977 789988754332 12234446665
Q ss_pred -ccChhHHHHHh--C-CeE---EcccccCCCCCCChHHHHH-------------------HcCCCccCCCCeEEEecCCC
Q psy15216 300 -FIEGESLLMAI--K-DIA---VSSGSACTSASLEPSYVLR-------------------ALGCNDELAHSSIRFTIGRF 353 (2602)
Q Consensus 300 -~~~~~~~~~~L--~-gI~---v~~g~~~~~~~~~~~~~~~-------------------~~g~~~~~~~~~iRis~~~~ 353 (2602)
..+..++...| + ||. ++++..+. +.++.+... .++..+....+.||++++.+
T Consensus 316 ~~~~~~~l~~~L~~~~gI~~~~v~~~~~p~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~ 393 (418)
T 2c81_A 316 GGLNADQFCEILREKLNMGTFYLHPPYLPV--HKNPLFCPWTKNRYLKSVRKTEAYWRGLHYPVSERASGQSIVIHHAIL 393 (418)
T ss_dssp TTCCHHHHHHHHHHHHTCCTTTEECCCCCG--GGCTTCCGGGCTTSCHHHHCCHHHHHTCCCHHHHHHHHHEEEEEGGGG
T ss_pred cccCHHHHHHHHHHcCCCCccccccccccc--ccCchhcccccccccccccccccccccCCChHHHHHHhCEEEecCCcc
Confidence 34677787777 5 999 88776332 111111000 00001111236899999999
Q ss_pred C-CHHHHHHHHHHHHhh
Q psy15216 354 T-TEKEIDFTIKLLKMK 369 (2602)
Q Consensus 354 ~-t~edid~li~~L~~~ 369 (2602)
+ |++|+++++++|++.
T Consensus 394 ~gt~edi~~~~~~l~~~ 410 (418)
T 2c81_A 394 LAEPSHLSLLVDAVAEL 410 (418)
T ss_dssp GSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 9 999999999999964
|
| >1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A | Back alignment and structure |
|---|
Probab=99.87 E-value=3.5e-22 Score=261.20 Aligned_cols=306 Identities=17% Similarity=0.196 Sum_probs=205.8
Q ss_pred eEEEEEcCcccEEEEEEECCeeEEEeCCCCCccccEEEEEecCC-----------------cEEEcHHHHhhhccCCCCc
Q psy15216 638 VSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDG-----------------KIYVGKKAKITQNIDPKNT 700 (2602)
Q Consensus 638 ~vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~v~~~~~~-----------------~~~vG~~A~~~~~~~p~~~ 700 (2602)
..|+||+||+++.+++..++.|.+ .+||+|+...+. ..+||.+|... |.
T Consensus 6 ~~ivID~Gs~~~k~G~~~~~~p~~--------~~Ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~a~~~----~~-- 71 (418)
T 1k8k_A 6 PACVVDCGTGYTKLGYAGNTEPQF--------IIPSCIAIKESAKVGDQAQRRVMKGVDDLDFFIGDEAIEK----PT-- 71 (418)
T ss_dssp CCEEEEECSSEEEEEETTCSSCSE--------EEESCEEECC-----------CCCTTGGGCEEEGGGGTSC----TT--
T ss_pred CeEEEECCCCeEEEeeCCCCCCCC--------cCCceEEEECcccccccccccccccccccCeEEChHHHhc----CC--
Confidence 468999999999999876655542 256666654321 25667666433 10
Q ss_pred hhhhhhhhCCCCCCCCCCCCCeeeecCCCceEEEEeCceeCHHHHHHHHHHHHHHHHHHhhcCc--cceEEEEEcCCCCH
Q psy15216 701 ISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNR--IFGAVITVPAYFND 778 (2602)
Q Consensus 701 ~~~~K~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~--~~~~ViTVPa~f~~ 778 (2602)
..+++ |+ ..+.+.--+....+++++.. +.++.. ...+|||+|++|+.
T Consensus 72 -~~~~~--------------pi-------------~~G~i~d~d~~e~i~~~~~~---~~L~~~~~~~~vvit~p~~~~~ 120 (418)
T 1k8k_A 72 -YATKW--------------PI-------------RHGIVEDWDLMERFMEQVIF---KYLRAEPEDHYFLLTEPPLNTP 120 (418)
T ss_dssp -SEEEC--------------CE-------------ETTEESCHHHHHHHHHHHHH---TTTCCCGGGCCEEEEECTTCCH
T ss_pred -CEEec--------------cc-------------cCCEECCHHHHHHHHHHHHH---hccCCCCCCCcEEEEeCCCCCH
Confidence 11121 11 11222223334445555442 334433 34799999999999
Q ss_pred HHHHHHHHHH-HHcCCceEEEechhHHHHHH-hhhcc-CcccceEEEEEeCCceEEEEEEEEECCEEEEEEEecCCCCcc
Q psy15216 779 IQRQFTKNAA-KLAGLNVLRLLNEPTSAAIA-YKLDK-NIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGG 855 (2602)
Q Consensus 779 ~qr~~~~~Aa-~~AGl~~~~li~EPtAAAl~-y~~~~-~~~~~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG 855 (2602)
.+|++|.+++ +.+|++.+.+++||+||+++ |.... ...+.+.+|+|+||||||++++. ++. .+....++..+||
T Consensus 121 ~~r~~~~e~~fe~~g~~~~~l~~ep~aa~~a~~~~~~~~~~~~~glVvDiG~gtt~v~~v~--~G~-~~~~~~~~~~lGG 197 (418)
T 1k8k_A 121 ENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERTLTGTVIDSGDGVTHVIPVA--EGY-VIGSCIKHIPIAG 197 (418)
T ss_dssp HHHHHHHHHHHHTSCCSEEEEEEHHHHHHHHGGGSTTCCSCCCCEEEEEESSSCEEEEEEE--TTE-ECGGGCEEESCSH
T ss_pred HHHHHHHHHHHHhcCCCEEEEechHHHHhhhhhcccccCCCCCeEEEEEcCCCceEEEEeE--CCE-EcccceEEEeCcH
Confidence 9999999999 88999999999999999987 52111 00122679999999999999985 443 2333335679999
Q ss_pred hHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHccccc-----------------ceEEEEE-ecCCceEEEEeC
Q psy15216 856 DDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQS-----------------SVKLNVK-LSDKKIVNITID 917 (2602)
Q Consensus 856 ~~~D~~l~~~l~~~~~~~~~~~~~~~~l~~~~e~~K~~LS~~~-----------------~~~~~i~-~~~~~~~~~~it 917 (2602)
++||+.|.+++.+++.. .... .-...+|++|+.++... ...+.++ ...+....++++
T Consensus 198 ~~lt~~l~~~l~~~~~~--~~~~---~~~~~~e~iK~~~~~v~~~~~~e~~~~~~~~~~~~~~~~lpd~~~~~~~~i~l~ 272 (418)
T 1k8k_A 198 RDITYFIQQLLRDREVG--IPPE---QSLETAKAVKERYSYVCPDLVKEFNKYDTDGSKWIKQYTGINAISKKEFSIDVG 272 (418)
T ss_dssp HHHHHHHHHHHHTTCCC--CCGG---GHHHHHHHHHHHHCCCCSCHHHHHHHHHHSGGGTCEEEEEECTTTCCEEEEEEC
T ss_pred HHHHHHHHHHHHhcCCC--CCCH---HHHHHHHHHHHhhchhcccHHHHHHhhcccccccceeEECCCCCCCcccEEEeC
Confidence 99999999999865321 1100 11256788888775421 1234444 223456678999
Q ss_pred HHHH---HHHHHHHH------HHHHHHHHHHHHHcC--CCccccceEEEecCccchHHHHHHHHhhccC-----------
Q psy15216 918 MKQF---FTITQHLV------NRTILLSSKALMDAN--LTIKDINNVILVGGSTRMKHIHEGVSNFFKT----------- 975 (2602)
Q Consensus 918 r~~f---e~l~~~~~------~~~~~~i~~~l~~a~--~~~~~i~~V~LvGG~sr~P~v~~~l~~~f~~----------- 975 (2602)
+++| |.+++|.+ ..+.++|.+.|..+. +.+..++.|+|+||+|++|.++++|++.++.
T Consensus 273 ~erf~~~E~lF~P~~~~~~~~~~i~~~i~~si~~~~~~~~~~l~~~IvL~GG~s~~pg~~~rl~~el~~~~~~~~~~~~~ 352 (418)
T 1k8k_A 273 YERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEE 352 (418)
T ss_dssp THHHHHHHTTTCGGGTCTTCCCCHHHHHHHHHHHSCGGGTTHHHHCEEEESGGGCSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhhCcHhhCCCccCCCCCCCCHHHHHHHHHHcCCHHHHHHHHhceEEeCCccccccHHHHHHHHHHHhhccccccccc
Confidence 9999 66666543 568888999998865 3455678999999999999999999876632
Q ss_pred -------------cccCcCCcchHhHHHHHHHhH
Q psy15216 976 -------------TLLTSIDPDKAVVFGAAIQAN 996 (2602)
Q Consensus 976 -------------~~~~~~~p~~aVa~GAa~~a~ 996 (2602)
++..+.+|..++.+||+++|.
T Consensus 353 ~~~~~~~p~~~~v~v~~~~~~~~~~w~Ggsilas 386 (418)
T 1k8k_A 353 LSGGRLKPKPIDVQVITHHMQRYAVWFGGSMLAS 386 (418)
T ss_dssp HC----CCCCCCCCEECCTTCTTHHHHHHHHHTT
T ss_pred cccccCCCCceeEEEeCCCccccceeHhHHHHHc
Confidence 233456788999999999985
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.1e-21 Score=254.73 Aligned_cols=316 Identities=17% Similarity=0.171 Sum_probs=229.0
Q ss_pred CCHHHHHHHHHHHhhcc---CCCCCccchhHHHHHHHHHHHHHHHHHHh----C--CCCCcEEEeCCHHHHHHHHHHhhh
Q psy15216 1405 IDPRVVDKMIPYLRVQF---GNPASRNHIYGWTAEKAIEKARNEVAQLI----Y--ADPREIIWTSGATESNNLAIKGAA 1475 (2602)
Q Consensus 1405 ~~~~v~eal~~~l~~~~---~np~~~~~~~~~~~~~~~~~lr~~ia~~~----g--~~~~~iv~t~gaT~al~~al~~l~ 1475 (2602)
.++.+.+++.+.++... .++.. ....++|+.+++++ | +++++|++|+|+|+|++.++.++.
T Consensus 50 ~~~~v~~a~~~~~~~~~~~~~y~~~----------~~~~~l~~~la~~~~~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~ 119 (407)
T 2zc0_A 50 PRAVLGEIAKEVLEKEPKSVMYTPA----------NGIPELREELAAFLKKYDHLEVSPENIVITIGGTGALDLLGRVLI 119 (407)
T ss_dssp CHHHHHHHHHHHHHHCGGGGSCCCT----------TCCHHHHHHHHHHHHHHSCCCCCGGGEEEESHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHhhccccccCCCC----------CCCHHHHHHHHHHHHHhcCCCCCcceEEEecCHHHHHHHHHHHhc
Confidence 45678888888876521 02111 12456778888887 8 567899999999999999999986
Q ss_pred hhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhcc----C--CceEE-EEeccccccccc
Q psy15216 1476 HFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKIC----S--DTILV-SVMLVNNEIGVI 1548 (2602)
Q Consensus 1476 ~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~----~--~t~lv-~l~~~~n~tG~~ 1548 (2602)
++||+|+++.|+|+++...+. ..|++++.++.++++ +|+++|+++++ + ++++| ++++++||||.+
T Consensus 120 ----~~gd~vl~~~p~~~~~~~~~~---~~g~~~~~v~~~~~~-~d~~~l~~~l~~~~~~~~~~~~v~~~~~~~nptG~~ 191 (407)
T 2zc0_A 120 ----DPGDVVITENPSYINTLLAFE---QLGAKIEGVPVDNDG-MRVDLLEEKIKELKAKGQKVKLIYTIPTGQNPMGVT 191 (407)
T ss_dssp ----CTTCEEEEEESCCHHHHHHHH---TTTCEEEEEEEETTE-ECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCC
T ss_pred ----CCCCEEEEeCCChHHHHHHHH---HcCCEEEEcccCCCC-CCHHHHHHHHHhhhcccCCceEEEECCCCCCCCCcC
Confidence 799999999999998766554 449999999987655 99999999998 6 78887 578999999999
Q ss_pred cChH---HHHHHhhhcCCEEEEecccccCcc----cccCC---CCCccEEEEccccccCCCc--eEEEEEecCCCCcccc
Q psy15216 1549 QPIL---EIGELCRSKGVIFHCDAAQAVGKI----DINIQ---NYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEA 1616 (2602)
Q Consensus 1549 ~~l~---~I~~ia~~~gi~vivD~a~~~g~~----~~~l~---~~~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~ 1616 (2602)
+|++ +|.++|++||+++|+|++|+.+.. ..++. ..+.++++.|+||.+| +| +|++++++++++.+.+
T Consensus 192 ~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~G~r~G~~~~~~~~~~~~~~ 270 (407)
T 2zc0_A 192 MSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALDNEGRVIVAGTLSKVLG-TGFRIGWIIAEGEILKKVLM 270 (407)
T ss_dssp CCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGGGGCSSCCEEEEEESTTTTC-TTSCCEEEECCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChhhcCCCCCEEEEcccccccC-CCcceEEEecCHHHHHHHHH
Confidence 9976 999999999999999999976432 11222 2234578889999888 56 7999998776665544
Q ss_pred ccccCCccccCCCCCcchhHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEE
Q psy15216 1617 QIHGGGHEYGLRSGTLATHQIVGMGEAFRLA--R-IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNIS 1693 (2602)
Q Consensus 1617 ~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~--~-~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~ 1693 (2602)
.... .. .+.+...+.++..+++.. . ..+++..+++.++++++.+.|.+..+++.+..+.. .....+.
T Consensus 271 ~~~~------~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~---~~~~~~~ 340 (407)
T 2zc0_A 271 QKQP------ID-FCAPAISQYIALEYLKRGYFEKYHLEGALLGYKEKRDIMLKALENHLPNAEFTKPIA---GMFVMFF 340 (407)
T ss_dssp HHTT------TT-SSSCHHHHHHHHHHHHTTHHHHHTTTTHHHHHHHHHHHHHHHHHHHCTTSCBCCCSB---SSEEEEE
T ss_pred HHHh------hc-CCCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEecCCC---cEEEEEE
Confidence 3211 11 123455555666666632 3 45677788888999999999976456655443221 2233344
Q ss_pred Ee-cCCcHHHHHhc--C-CEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1694 FN-FIEGESLLMAI--K-DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1694 ~~-~~~~~~~~~~L--~-gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
++ ..+..++...| + ||.+++|..|... ....+++||+++.. |.+++++++++|++.
T Consensus 341 ~~~~~~~~~l~~~l~~~~gi~v~~g~~~~~~---------------~~~~~~iRis~~~~-~~~~i~~~~~~l~~~ 400 (407)
T 2zc0_A 341 LPEGADGISFANELMEREGVVVVPGKPFYTD---------------ESGKNAIRLNFSRP-SKEEIPIGIKKLAKL 400 (407)
T ss_dssp CSTTCCHHHHHHHHHHHTCEECBCSGGGCSS---------------SCCTTEEEEECSSS-CTTHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHhCCeEEECchhccCC---------------CCCCCeEEEEeCCC-CHHHHHHHHHHHHHH
Confidence 43 23556676666 5 9999999877542 01137899999876 889999999999874
|
| >1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.8e-21 Score=253.73 Aligned_cols=305 Identities=16% Similarity=0.127 Sum_probs=221.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHH-HHhCCc
Q psy15216 1429 HIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDGF 1507 (2602)
Q Consensus 1429 ~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~-~~~~G~ 1507 (2602)
|.+++.......++|+++++++|.+ +.++++++++|++.++.++. ++||+|+++.+.|+++...+.. +...|+
T Consensus 106 ~~y~r~~~~~~~~l~~~lA~l~g~~--~~v~~~sG~~Ai~~al~~l~----~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~ 179 (445)
T 1qgn_A 106 FEYGRYGNPTTVVLEEKISALEGAE--STLLMASGMCASTVMLLALV----PAGGHIVTTTDCYRKTRIFIETILPKMGI 179 (445)
T ss_dssp CCBGGGCCHHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHHS----CSSCEEEEETTSCHHHHHHHHHTGGGGTC
T ss_pred ccccCCCChHHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHHh----CCCCEEEEcCCCchhHHHHHHHHHHHcCC
Confidence 3344444567889999999999975 44455555699999999886 7999999999999998776553 455699
Q ss_pred EEEEeccCCCCCcChhHHHhhccCCc-eEEEEeccccccccccChHHHHHHhhhcCCEEEEecccccCcccccCCCCCcc
Q psy15216 1508 RVTYLKPKNNGLITLSQLEEKICSDT-ILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVD 1586 (2602)
Q Consensus 1508 ~v~~v~~~~~~~id~d~l~~~i~~~t-~lv~l~~~~n~tG~~~~l~~I~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D 1586 (2602)
++++++.+ |+++|+++|+++| ++|++++|+||||.+.|+++|.++|++||+++++|++|+.+.... ...+++|
T Consensus 180 ~v~~v~~~-----d~~~l~~ai~~~tv~lV~le~p~NptG~v~dl~~I~~la~~~g~~livD~a~~~~~~~~-~~~~g~D 253 (445)
T 1qgn_A 180 TATVIDPA-----DVGALELALNQKKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQK-ALALGAD 253 (445)
T ss_dssp EEEEECSS-----CHHHHHHHHHHSCEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCC-TTTTTCS
T ss_pred EEEEeCCC-----CHHHHHHHhccCCCCEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccCC-ccccCCE
Confidence 99999864 8999999999999 999999999999999999999999999999999999998776432 3356899
Q ss_pred EEEEccccccCCCc---eEEEEEecCCCCccccccccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15216 1587 LMSFSAHKIYGPKG---IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQK 1663 (2602)
Q Consensus 1587 ~~v~S~~K~~gp~G---~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~ 1663 (2602)
++++|+||++|+.| +|+++.++++++.+.+... ...++++....+.+..+++. +....+++.+.++
T Consensus 254 iv~~S~sK~~gg~gd~~~G~l~~~~~l~~~l~~~~~-------~~g~~~~~~~a~~~~~~l~~----l~~r~~~~~~~a~ 322 (445)
T 1qgn_A 254 LVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLHH-------ILGGALNPNAAYLIIRGMKT----LHLRVQQQNSTAL 322 (445)
T ss_dssp EEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHHHH-------HHCCCCCHHHHHHHHHHGGG----HHHHHHHHHHHHH
T ss_pred EEEECCcccccccccceEEEEEECHHHHHHHHHHHH-------HhCCCCCHHHHHHHHHhHHH----HHHHHHHHHHHHH
Confidence 99999999888877 8999998876555543221 01123343333333344432 3344455566678
Q ss_pred HHHHHHhhcCCcE-EEeCCC--CC-----------CCCceEEEEEecC--CcHHHHHhcC--CEEEccccccCCC-----
Q psy15216 1664 RLYNGLMESIEEI-YINGDM--NN-----------RIPHNLNISFNFI--EGESLLMAIK--DIAVSSGSACTSA----- 1720 (2602)
Q Consensus 1664 ~l~~~L~~~~~gl-~i~~~~--~~-----------~~~~~~~~~~~~~--~~~~~~~~L~--gI~v~~g~~~~~~----- 1720 (2602)
++.+.|.+ .|++ .+..|. .+ ..+.+..|.+++. ....++..|. ++.++.|..|...
T Consensus 323 ~l~~~L~~-~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~~~~~~~~~l~~l~~~~i~~s~G~~~sl~~~p~~ 401 (445)
T 1qgn_A 323 RMAEILEA-HPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDLLTTAKFVDALKIPYIAPSFGGCESIVDQPAI 401 (445)
T ss_dssp HHHHHHHT-CTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCHHHHHHHHHHCSSSEECSCCCSSSCEEECHHH
T ss_pred HHHHHHhc-CCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECCCHHHHHHHHHhCCCceEeccCCCCceeeecccc
Confidence 88888887 6777 454331 10 1355666666542 2455666664 8888888887531
Q ss_pred ---CCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1721 ---SLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1721 ---~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
...++..+..+|+++ +.||||++. ||++++++.|++.
T Consensus 402 ~~h~~~~~~~~~~~g~~~----~~iRlSvG~----Edid~li~~L~~a 441 (445)
T 1qgn_A 402 MSYWDLSQSDRAKYGIMD----NLVRFSFGV----EDFDDLKADILQA 441 (445)
T ss_dssp HHSTTSCHHHHHTTTCCS----SEEEEECCS----SCHHHHHHHHHHH
T ss_pred cccccCCHHHHHhcCCCC----CeEEEEecc----CCHHHHHHHHHHH
Confidence 012344556677654 899999993 6899999988863
|
| >2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-21 Score=255.53 Aligned_cols=319 Identities=16% Similarity=0.150 Sum_probs=229.3
Q ss_pred CCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCE
Q psy15216 1405 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKH 1484 (2602)
Q Consensus 1405 ~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~ 1484 (2602)
.++.+.+++.+.+.....+++. +...+.......++|+++++++|. ++++++++|++ ++..++..+.. +.+||+
T Consensus 61 ~~p~v~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~la~~~~~-~~~i~~~sG~~-a~~~~~~~l~~--~~~gd~ 134 (401)
T 2bwn_A 61 QHPVVLAAMHEALEAVGAGSGG--TRNISGTTAYHRRLEAEIAGLHQK-EAALVFSSAYN-ANDATLSTLRV--LFPGLI 134 (401)
T ss_dssp GCHHHHHHHHHHHHHHCSCCCS--BTTTBCCBHHHHHHHHHHHHHTTC-SEEEEESCHHH-HHHHHHHHHHH--HSTTCE
T ss_pred CCHHHHHHHHHHHHHcCCCCCC--cCcccCChHHHHHHHHHHHHHhCC-CcEEEECCcHH-HHHHHHHHHhc--CCCCCE
Confidence 5678999999998875444442 221222234678899999999997 46777876655 76666665431 258999
Q ss_pred EEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhcc----CCceEEEEeccccccccccChHHHHHHhhh
Q psy15216 1485 IITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKIC----SDTILVSVMLVNNEIGVIQPILEIGELCRS 1560 (2602)
Q Consensus 1485 Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~----~~t~lv~l~~~~n~tG~~~~l~~I~~ia~~ 1560 (2602)
|+++.++|+++...+... |++++.++.+ |+++++++++ +++++|++++++||||.++|+++|.++|++
T Consensus 135 Vl~~~~~~~~~~~~~~~~---g~~~~~v~~~-----d~~~le~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~ 206 (401)
T 2bwn_A 135 IYSDSLNHASMIEGIKRN---AGPKRIFRHN-----DVAHLRELIAADDPAAPKLIAFESVYSMDGDFGPIKEICDIAEE 206 (401)
T ss_dssp EEEETTCCHHHHHHHHHS---CCCEEEECTT-----CHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBCCHHHHHHHHHH
T ss_pred EEECchhhHHHHHHHHHc---CCeEEEEcCC-----CHHHHHHHHHhhccCCceEEEEecCcCCCCCcCCHHHHHHHHHH
Confidence 999999999988776554 8999999864 7888988886 689999999999999999999999999999
Q ss_pred cCCEEEEecccccCccc-c-----cCCCC--CccEEEEccccccCCCceEEEEEecCCCCccccccccCCccccCCCCCc
Q psy15216 1561 KGVIFHCDAAQAVGKID-I-----NIQNY--KVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTL 1632 (2602)
Q Consensus 1561 ~gi~vivD~a~~~g~~~-~-----~l~~~--~~D~~v~S~~K~~gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~ 1632 (2602)
||+++|+|++|+.|... . ..... ..++++.|++|.+|++| ||++.++++.+.+..... ...+..+++
T Consensus 207 ~~~~li~Dea~~~g~~~~~g~~~~~~~~~~~~~~i~~~s~sK~~~~~G-G~~~~~~~~~~~l~~~~~----~~~~~~~~~ 281 (401)
T 2bwn_A 207 FGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGVFG-GYIAASARMVDAVRSYAP----GFIFSTSLP 281 (401)
T ss_dssp HTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTCSCC-EEEEECHHHHHHHHHHCH----HHHTSBCCC
T ss_pred cCCEEEEeccccccccCCCCceeeeccCccccCcEEEeechhhccCCC-CEEecCHHHHHHHHHhCc----CceecCCCC
Confidence 99999999999865321 0 01111 35889999999888877 999988665544432110 112334454
Q ss_pred chhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEec-CCcHHHHHhc---C
Q psy15216 1633 ATHQIVGMGEAFRLARI-EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGESLLMAI---K 1707 (2602)
Q Consensus 1633 ~~~~~~al~~aL~~~~~-~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~L---~ 1707 (2602)
+ ..++++.+++++... ++++.++++.++++++.+.|.+ . ++.+..+. ..+..+.++. .+..++...| +
T Consensus 282 ~-~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~----~~~~~~~~~~~~~~~~~~~~L~~~~ 354 (401)
T 2bwn_A 282 P-AIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKA-L-GMPIIDHG----SHIVPVVIGDPVHTKAVSDMLLSDY 354 (401)
T ss_dssp H-HHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH-H-TCCBCCCS----SSCEEEECCCHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH-C-CCcccCCC----CCeEEEEeCChHHHHHHHHHHHhcC
Confidence 5 666777788886543 4678889999999999999987 3 66555332 1233444432 2344565554 4
Q ss_pred CEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1708 DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1708 gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
||.++++..+..+ ...+++|++++.++|.+|+++++++|++.
T Consensus 355 gi~v~~~~~~~~~----------------~~~~~iRis~~~~~t~~~i~~~~~~l~~~ 396 (401)
T 2bwn_A 355 GVYVQPINFPTVP----------------RGTERLRFTPSPVHDLKQIDGLVHAMDLL 396 (401)
T ss_dssp CEECCEECTTTSC----------------TTCCEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred CEEEeecCCCCCC----------------CCCceEEEEeeCCCCHHHHHHHHHHHHHH
Confidence 9999877643221 01268999999999999999999999873
|
| >2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.3e-22 Score=263.57 Aligned_cols=277 Identities=16% Similarity=0.117 Sum_probs=213.2
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEecc--
Q psy15216 41 KAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP-- 118 (2602)
Q Consensus 41 ~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~-- 118 (2602)
...+++++++|+ +|++ +++++++|+|+|+.+++.++. ++||+|+++.+.|+++...+... |++++++++
T Consensus 57 ~~~~~~~~~la~-~g~~-~~v~~~~G~t~a~~~~~~a~~----~~gd~Vlv~~~~h~s~~~~~~~~---G~~~~~v~~~~ 127 (446)
T 2x3l_A 57 EVILKSMKQVEK-HSDY-DGYFLVNGTTSGILSVIQSFS----QKKGDILMARNVHKSVLHALDIS---QQEGHFIETHQ 127 (446)
T ss_dssp SHHHHHHHHHCS-CTTE-EEEEESSHHHHHHHHHHHTTT----TSSSCEEECTTCCHHHHHHHHHH---TCCEEECEEEE
T ss_pred hHHHHHHHHHHh-cCCC-ceEEEeCCHHHHHHHHHHHhc----CCCCEEEEecCccHHHHHHHHHc---CCeEEEEeCee
Confidence 467899999999 9987 689999999999999999987 79999999999999999988877 999999988
Q ss_pred CCC----CccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHhcCCEEEEecccccccc-----cccCCCCCc
Q psy15216 119 KNN----GLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKI-----DINIQNYKV 189 (2602)
Q Consensus 119 ~~~----~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~~g~~livD~a~a~g~~-----~~dl~~~~~ 189 (2602)
+++ +.+|+++| +.+++++|++++ .|+||.+.|+++|.++|++||+++|+|++|+. .. +++....++
T Consensus 128 ~~~~~~~~~~d~~~l---~~~~~~~v~~~~-~n~~G~~~~l~~I~~l~~~~~~~livDea~~~-~~~f~~~~~~~~~~g~ 202 (446)
T 2x3l_A 128 SPLTNHYNKVNLSRL---NNDGHKLVVLTY-PNYYGETFNVEEVIKSLHQLNIPVLIDEAHGA-HFGLQGFPDSTLNYQA 202 (446)
T ss_dssp CTTTSSEEEEEC----------CCEEEEES-SCTTSCCCCHHHHHHHHHHTTCCEEEECTTCT-TTTSTTSCCCGGGGTC
T ss_pred ccccCcCCCCCHHHH---cCCCceEEEEEC-CCCCeEecCHHHHHHHHHhcCCeEEEcchhhh-hhccCCCCCChHHcCC
Confidence 554 56888888 567899999999 56699999999999999999999999999986 22 444555678
Q ss_pred cEEEecccc-ccCCCCcEEEEEecCCCCcccceecCCCccccccccCcchhHHHHHHHHHHHHHHh-HHHHHHHHHHHHH
Q psy15216 190 DLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIE-MKEELKRILFLQK 267 (2602)
Q Consensus 190 D~~~~S~~K-~~Gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~-~~~~~~~~~~l~~ 267 (2602)
|++++|+|| ++|+.|+|++++++++++ +.+...++ ..+..+++++..++++.+++++.... .++..++..++++
T Consensus 203 Di~~~S~~K~l~~~~g~g~l~~~~~~i~-~~~~~~~~---~~~~~~s~~~~~~aal~~a~~~l~~~g~~~~~~~~~~l~~ 278 (446)
T 2x3l_A 203 DYVVQSFHKTLPALTMGSVLYIHKNAPY-RENIIEYL---SYFQTSSPSYLIMASLESAAQFYKTYDSTLFFAKRAQLIE 278 (446)
T ss_dssp SEEEECHHHHSSSCTTCEEEEEETTCTT-HHHHHHHH---HHHSCSSCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred CEEEECCccccccccccEEEEEcCCcCC-HHHHHHHH---HHHcCCCchHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 999999999 788889999999988765 33322110 22346788888888888888865543 3447777777777
Q ss_pred HHHHHHhhccCceEEeCCCCCCCCceEEEEEcccChhHHHHHh--CCeEEc-ccccCCCCCCChHHHHHHcCCCccCCCC
Q psy15216 268 RLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDIAVS-SGSACTSASLEPSYVLRALGCNDELAHS 344 (2602)
Q Consensus 268 ~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~v~-~g~~~~~~~~~~~~~~~~~g~~~~~~~~ 344 (2602)
++++. +++++.+.. +..+.+.+++.+..++.+.| +||.++ +|. +
T Consensus 279 ~l~~~------g~~~~~~~~---~~~l~i~~~~~~~~~l~~~L~~~GI~v~~~g~------------------------~ 325 (446)
T 2x3l_A 279 CLENK------GFEMLQVDD---PLKLLIKYEGFTGHDIQNWFMNAHIYLELADD------------------------Y 325 (446)
T ss_dssp HHHHH------TCEEEECSS---TTEEEEECTTSCHHHHHHHHHHTTEEESEECS------------------------S
T ss_pred HHHHc------CCEECcCCC---CeEEEEEeCCcCHHHHHHHHHHCCCEEEecCC------------------------C
Confidence 77766 566664432 23345555555666777766 799886 221 5
Q ss_pred eEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 345 SIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 345 ~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
++|++++.++|++++ +++++|++.
T Consensus 326 ~iRi~~~~~~t~e~i-~l~~aL~~~ 349 (446)
T 2x3l_A 326 QALAILPLWHHDDTY-LFDSLLRKI 349 (446)
T ss_dssp CEEEECCCCCTTCCC-CHHHHHHHH
T ss_pred EEEEEeecCCCHHHH-HHHHHHHHH
Confidence 799999999999999 999999964
|
| >3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.8e-21 Score=252.64 Aligned_cols=308 Identities=15% Similarity=0.061 Sum_probs=221.7
Q ss_pred CcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHHHH-HhCC
Q psy15216 32 NHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDG 110 (2602)
Q Consensus 32 ~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~-~~~G 110 (2602)
.|.+++...+..+++++++++++|.+ ++++++|+++|++.++.++. ++||+|+++.++|+++...+... +..|
T Consensus 57 ~~~y~r~~~~~~~~l~~~la~~~g~~--~~~~~~sGt~A~~~al~~~~----~~gd~Vi~~~~~y~~~~~~~~~~~~~~g 130 (392)
T 3qhx_A 57 GYEYARTGNPTRTALEAALAAVEDAA--FGRAFSSGMAAADCALRAML----RPGDHVVIPDDAYGGTFRLIDKVFTGWN 130 (392)
T ss_dssp TBCBTTTCCHHHHHHHHHHHHHTTCS--EEEEESSHHHHHHHHHHHHC----CTTCEEEEETTCCHHHHHHHHHTGGGGT
T ss_pred CccccCCCChHHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHHh----CCCCEEEEeCCCcchHHHHHHHHHHhcC
Confidence 35556556677899999999999976 78999999999999999887 79999999999999987776443 5679
Q ss_pred cEEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHhcCCEEEEecccccccccccCCCCCcc
Q psy15216 111 FRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVD 190 (2602)
Q Consensus 111 ~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~~g~~livD~a~a~g~~~~dl~~~~~D 190 (2602)
+++++++.+ |+++++++++++|++|++++|+||||.+.|+++|+++|++||+++|+|++|+.+.. .+...+++|
T Consensus 131 ~~~~~v~~~-----d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~g~~li~D~~~~~~~~-~~~~~~~~d 204 (392)
T 3qhx_A 131 VEYTPVALA-----DLDAVRAAIRPTTRLIWVETPTNPLLSIADIAGIAQLGADSSAKVLVDNTFASPAL-QQPLSLGAD 204 (392)
T ss_dssp CEEEEECTT-----CHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCTTT-CCGGGGTCS
T ss_pred cEEEEeCCC-----CHHHHHHhhCCCCeEEEEECCCCCCcEEecHHHHHHHHHHcCCEEEEECCCccccc-CChHHhCCc
Confidence 999999865 89999999999999999999999999999999999999999999999999987643 233356789
Q ss_pred EEEeccccccCCCC---cEEEEEec-CCCCcccceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy15216 191 LMSFSAHKIYGPKG---IGALYIRR-NPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQ 266 (2602)
Q Consensus 191 ~~~~S~~K~~Gp~G---~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~ 266 (2602)
+++.|+||++|++| +|+++.++ ++.+.+..... ....+++....+.+..+++. +....++..+++
T Consensus 205 i~~~S~sK~lg~~g~~~~G~v~~~~~~~~~~l~~~~~-------~~g~~~~~~~~~~~~~~l~~----l~~~~~~~~~~~ 273 (392)
T 3qhx_A 205 VVLHSTTKYIGGHSDVVGGALVTNDEELDQSFAFLQN-------GAGAVPGPFDAYLTMRGLKT----LVLRMQRHSENA 273 (392)
T ss_dssp EEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHH-------HHCCCCCHHHHHHHHHHHTT----HHHHHHHHHHHH
T ss_pred EEEEcCccccCCCCCceEEEEEECcHHHHHHHHHHHH-------hcCCCCCHHHHHHHHhhhhH----HHHHHHHHHHHH
Confidence 99999999888776 79999874 44444433221 01123333333333333332 344556667777
Q ss_pred HHHHHHHhhccCceEEe-CCC--CC-----------CCCceEEEEEcc--cChhHHHHHh--CCeEEcccccCCCC----
Q psy15216 267 KRLYNGLMESIEEIYIN-GDM--NN-----------RIPHNLNISFNF--IEGESLLMAI--KDIAVSSGSACTSA---- 324 (2602)
Q Consensus 267 ~~l~~~L~~~~~g~~l~-~~~--~~-----------~~~~~~~~~~~~--~~~~~~~~~L--~gI~v~~g~~~~~~---- 324 (2602)
+++.+.|.+ .|.+... .|. .. ..+.++.|.++. .....++..| .++.++.|..|+..
T Consensus 274 ~~l~~~L~~-~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~~l~~~~~~~s~G~~~sl~~~~~ 352 (392)
T 3qhx_A 274 AAVAEFLAE-HPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAGRTAAEQLCAKTNIFILAESLGSVESLIEHPS 352 (392)
T ss_dssp HHHHHHHHT-CTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTCHHHHHHHHHHCSSSEECSCCCCSSCEEECGG
T ss_pred HHHHHHHhc-CCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCCcHHHHHHHHHhCCCceECCCCCCCCceeeCcc
Confidence 788888876 5666432 221 11 124456677765 3456677777 57778888775421
Q ss_pred CCChHHHHH-HcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHH
Q psy15216 325 SLEPSYVLR-ALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK 367 (2602)
Q Consensus 325 ~~~~~~~~~-~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~ 367 (2602)
...+..... .+|+ .++.||||++..+++++++.+.++|+
T Consensus 353 ~~~~~~~~~~~~g~----~~~~iRlSvg~e~~~~~i~~l~~al~ 392 (392)
T 3qhx_A 353 AMTHASTAGSQLEV----PDDLVRLSVGIEDVADLLDDLKQALG 392 (392)
T ss_dssp GTSCGGGBTTBCCC----CTTEEEEECCSSCHHHHHHHHHHHHC
T ss_pred cccccccCHHHcCC----CCCeEEEEeccCCHHHHHHHHHHHhC
Confidence 000000000 1222 35889999999999999999888763
|
| >1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=2.2e-21 Score=249.73 Aligned_cols=314 Identities=14% Similarity=0.182 Sum_probs=223.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhccc
Q psy15216 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAH 80 (2602)
Q Consensus 1 Ld~a~~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~ 80 (2602)
|+++..+++++.+++++.+.+.. + . .++...+..+++++++++++| .+.++++++|+|+|+.+++.++.
T Consensus 12 ~~~~~~~~~~~~v~~a~~~~~~~---~--~----~~~~~~~~~~~l~~~la~~~g-~~~~v~~~~~gt~a~~~al~~~~- 80 (356)
T 1v72_A 12 FSSDNIAGASPEVAQALVKHSSG---Q--A----GPYGTDELTAQVKRKFCEIFE-RDVEVFLVPTGTAANALCLSAMT- 80 (356)
T ss_dssp CSCGGGCCCCHHHHHHHHHTTSS---C--C----CSTTCSHHHHHHHHHHHHHHT-SCCEEEEESCHHHHHHHHHHTSC-
T ss_pred eccCCccCCCHHHHHHHHhhccC---c--c----cccccchHHHHHHHHHHHHhC-CCCcEEEeCCccHHHHHHHHHhc-
Confidence 34444457889999999886521 1 1 111223467899999999999 44469999999999999999987
Q ss_pred ccccCCCEEEEcCCCCcccHHH--HHHHHhC-CcEEEEeccCCCCccChHHHHh-hccC-------CceEEEEecccCcc
Q psy15216 81 FYKKRGKHIITVQTEHKSVLDS--IRKLEND-GFRVTYLKPKNNGLITLSQLEE-KICS-------DTILVSVMLVNNEI 149 (2602)
Q Consensus 81 ~~~~~gd~Vlv~~~~~~s~~~~--~~~~~~~-G~~v~~v~~~~~~~ld~e~l~~-~i~~-------~tklv~i~~~~npT 149 (2602)
++||+|+++.+.|+++... +... . |++++.++.+ ++.+|+++|++ ++++ ++++|++++++| |
T Consensus 81 ---~~gd~vi~~~~~~~~~~~~~~~~~~--~~g~~~~~v~~~-~~~~d~~~l~~~~i~~~~~~~~~~~~~v~~~~~~~-t 153 (356)
T 1v72_A 81 ---PPWGNIYCHPASHINNDECGAPEFF--SNGAKLMTVDGP-AAKLDIVRLRERTREKVGDVHTTQPACVSITQATE-V 153 (356)
T ss_dssp ---CTTEEEEECTTSHHHHSSTTHHHHH--TTSCEEEECCCG-GGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCT-T
T ss_pred ---CCCCEEEEcCccchhhhhchHHHHH--hCCcEEEEecCC-CCeEcHHHHHHHhhhcchhhccCCceEEEEEcCCC-C
Confidence 7999999999998876544 3222 2 8899999875 47799999999 9975 689999999886 9
Q ss_pred ccccc---HHHHHHHHHhcCCEEEEeccccccc-----ccccCCC--CCccEEEeccccccCCCCcEEEEEecCCCCccc
Q psy15216 150 GVIQP---ILEIGELCRSKGVIFHCDAAQAVGK-----IDINIQN--YKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIE 219 (2602)
Q Consensus 150 G~~~~---l~~I~~la~~~g~~livD~a~a~g~-----~~~dl~~--~~~D~~~~S~~K~~Gp~G~G~l~~~~~~~~~l~ 219 (2602)
|.++| +++|.++|++||+++|+|++|+.+. .+..... .+.|++++|+||+.+|.|+|++++++++++.+.
T Consensus 154 G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~g~~~G~g~~~~~~~~~~~~~ 233 (356)
T 1v72_A 154 GSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKNGVLAAEAIVLFNTSLATEMS 233 (356)
T ss_dssp SCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGGTCSSCEEEEESSGGGHHHHH
T ss_pred CccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCCHHHhhhhhcCCEEEEecccCCCcCccEEEEECHHHHhhHH
Confidence 99555 7889999999999999999986431 1122111 357899999999855777789998887776654
Q ss_pred ceecCCCccccccccCcchhHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEE
Q psy15216 220 AQIHGGGHEYGLRSGTLATHQIVGMGEAFRLAR-IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISF 298 (2602)
Q Consensus 220 ~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~-~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~ 298 (2602)
.... ..++.......++..+++... ..+.+..++..++++++.+.|.+ ++++++..+.. ..+..+.+
T Consensus 234 ~~~~--------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~---~~~~~~~~ 301 (356)
T 1v72_A 234 YRRK--------RAGHLSSKMRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEG-LGGVEVLGGTE---ANILFCRL 301 (356)
T ss_dssp HHHH--------HTTCCCSSTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTT-CTTEEEESCCC---SSEEEEEE
T ss_pred HHhh--------ccCchhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh-CCCcEEccCCC---ccEEEEEc
Confidence 3321 011111112222323344322 23456777888999999999977 68888865432 23333444
Q ss_pred cccChhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 299 NFIEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 299 ~~~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
+ .++...| +||.+++|. +. .+++|++++.+++++|+++++++|++.
T Consensus 302 ~----~~~~~~l~~~gi~v~~g~-~~--------------------~~~iRi~~~~~~~~~~i~~~~~~l~~~ 349 (356)
T 1v72_A 302 D----SAMIDALLKAGFGFYHDR-WG--------------------PNVVRFVTSFATTAEDVDHLLNQVRLA 349 (356)
T ss_dssp C----HHHHHHHHHTTCBCBCSS-SS--------------------TTEEEEECCTTCCHHHHHHHHHHHHHT
T ss_pred C----HHHHHHHHhcCeEEeccc-cC--------------------CCeEEEEecCCCCHHHHHHHHHHHHHH
Confidence 3 3566666 788888664 21 278999999999999999999999864
|
| >1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.6e-21 Score=252.36 Aligned_cols=308 Identities=12% Similarity=0.096 Sum_probs=211.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHHH-HhCCc
Q psy15216 1429 HIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDGF 1507 (2602)
Q Consensus 1429 ~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~-~~~G~ 1507 (2602)
|.+++.......++++.+++++|.+ +.++++|+++|++.++.++. ++||+|+++.+.|+++...+..+ ...|+
T Consensus 57 ~~~~r~~~~~~~~l~~~la~~~g~~--~~i~~~sG~~a~~~~l~~~~----~~gd~vl~~~~~~~~~~~~~~~~~~~~g~ 130 (398)
T 1gc0_A 57 HFYSRISNPTLNLLEARMASLEGGE--AGLALASGMGAITSTLWTLL----RPGDEVLLGNTLYGCTFAFLHHGIGEFGV 130 (398)
T ss_dssp ------CCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHC----CTTCEEEEESSCCSHHHHHHHHTGGGGTC
T ss_pred CcccCCCChHHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHHh----cCCCEEEEeCCCchhHHHHHHHHHHHcCC
Confidence 4444444567889999999999975 56667777899999999986 79999999999999988777543 45699
Q ss_pred EEEEeccCCCCCcChhHHHhhccCCceEEEEeccccccccccChHHHHHHhhhcCCEEEEecccccCcccccCCCCCccE
Q psy15216 1508 RVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDL 1587 (2602)
Q Consensus 1508 ~v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~ 1587 (2602)
++++++.+ |+++++++++++|++|++++|+||||.+.|+++|.++|++||+++|+|++|+.+....++ .+++|+
T Consensus 131 ~~~~~~~~-----d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~~-~~~~d~ 204 (398)
T 1gc0_A 131 KLRHVDMA-----DLQALEAAMTPATRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYLQRPL-ELGADL 204 (398)
T ss_dssp EEEEECTT-----CHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHGGGTCEEEEECTTTHHHHCCGG-GGTCSE
T ss_pred EEEEECCC-----CHHHHHHhcCCCCeEEEEECCCCCCcccccHHHHHHHHHHcCCEEEEECCCcccccCCch-hhCceE
Confidence 99998753 899999999999999999999999999999999999999999999999999877644333 357899
Q ss_pred EEEccccccC-CCc--eEEEEEecCCCC-ccccccccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15216 1588 MSFSAHKIYG-PKG--IGALYIRRNPRT-RIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQK 1663 (2602)
Q Consensus 1588 ~v~S~~K~~g-p~G--~G~l~~~~~~~~-~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~ 1663 (2602)
++.|+||++| |.+ .|+++++++.+. .+.+...+ +..++.+....+++..+++.. ....++..+.++
T Consensus 205 ~~~S~sK~~~~~~~~~~G~l~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~ 274 (398)
T 1gc0_A 205 VVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKD------MTGAVLSPHDAALLMRGIKTL----NLRMDRHCANAQ 274 (398)
T ss_dssp EEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHH------HTCCCCCHHHHHHHHHHHTTH----HHHHHHHHHHHH
T ss_pred EEECCccccCCCCCCeEEEEEEChHHHHHHHHHHhhc------cCCCCCCHHHHHHHHhccchH----HHHHHHHHHHHH
Confidence 9999999666 443 599999876443 33332211 023455655555554555533 334445555666
Q ss_pred HHHHHHhhcCCcEE--------------EeCCCCCCCCceEEEEEecC--CcHHHHHhcCCEEEcc---ccc------cC
Q psy15216 1664 RLYNGLMESIEEIY--------------INGDMNNRIPHNLNISFNFI--EGESLLMAIKDIAVSS---GSA------CT 1718 (2602)
Q Consensus 1664 ~l~~~L~~~~~gl~--------------i~~~~~~~~~~~~~~~~~~~--~~~~~~~~L~gI~v~~---g~~------~~ 1718 (2602)
.+.+.|.+ .+.+. +..+.....+.+..|.+++. ....++.. .++.++. |+. |.
T Consensus 275 ~l~~~L~~-~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~-~~i~~~~~s~G~~~sl~~~~~ 352 (398)
T 1gc0_A 275 VLAEFLAR-QPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGGIGAGRRFMNA-LQLFSRAVSLGDAESLAQHPA 352 (398)
T ss_dssp HHHHHHHT-CTTEEEEEEC----------------CCTTEEEEEETTHHHHHHHHHHH-CSSSEECSCCSCSSCEEECGG
T ss_pred HHHHHHhc-CCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEEEECCCHHHHHHHHHh-CCCceeccCCCCcceeeeccc
Confidence 66666655 34332 22211112345555555431 12233333 3444333 422 21
Q ss_pred C--CCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1719 S--ASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1719 ~--~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
. ....++.....+|.+ .++||||++.++++++++.+.++|++
T Consensus 353 ~~~~~~~~~~~~~~~g~~----~~~iRis~g~~~~~~~i~~l~~al~~ 396 (398)
T 1gc0_A 353 SMTHSSYTPEERAHYGIS----EGLVRLSVGLEDIDDLLADVQQALKA 396 (398)
T ss_dssp GTTTSSSCHHHHHHTTCC----TTEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred ccccccCCHHHHHhcCCC----CCeEEEEeCcCCHHHHHHHHHHHHHh
Confidence 1 112345566677765 38999999999999999999999986
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.87 E-value=7.4e-22 Score=260.04 Aligned_cols=299 Identities=15% Similarity=0.091 Sum_probs=205.4
Q ss_pred HHHHHHHHHHHHh------CCCCCcEEEeCCHHHHHHHHHHhcccccccCCC-----EEEEc-CCCCcccHHHHHHHH--
Q psy15216 42 AIEKARNEVAQLI------YADPREIIWTSGATESNNLAIKGAAHFYKKRGK-----HIITV-QTEHKSVLDSIRKLE-- 107 (2602)
Q Consensus 42 ~~~~~r~~lA~~~------g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd-----~Vlv~-~~~~~s~~~~~~~~~-- 107 (2602)
...++|+++|+++ ++++++|++|+|+|+|+++++.++. ++|| +|+++ .|+|+.+...+....
T Consensus 76 g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~----~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~ 151 (417)
T 3g7q_A 76 GKTALLNALAVLLRETLGWDIEPQNIALTNGSQSAFFYLFNLFA----GRRADGSTKKVLFPLAPEYIGYADSGLEDDLF 151 (417)
T ss_dssp SHHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHS----BC----CCBEEEESSCCCHHHHHC-----CCE
T ss_pred CcHHHHHHHHHHHHHHhCCCCCcccEEEeCCcHHHHHHHHHHHc----CCCccCCcceEEEeCCCccccchhhccchhhh
Confidence 3566777777776 5678899999999999999999997 7877 99998 999998876654331
Q ss_pred -hCCcEEEEeccCC-CCccChHHHHhhccCCceEEEEecccCccccccc---HHHHHHHHHhcCCEEEEecccccccccc
Q psy15216 108 -NDGFRVTYLKPKN-NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQAVGKIDI 182 (2602)
Q Consensus 108 -~~G~~v~~v~~~~-~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~---l~~I~~la~~~g~~livD~a~a~g~~~~ 182 (2602)
..+..+..++.+. ++.+|+++++ ++++++++++++|+||||.++| +++|+++|++||+++|+|++|+.+....
T Consensus 152 ~~~~~~~~~~~~~~~~~~~d~~~l~--~~~~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~~~~~~ 229 (417)
T 3g7q_A 152 VSARPNIELLPEGQFKYHVDFEHLH--IGEETGMICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVPFPGI 229 (417)
T ss_dssp EECCCEEEEEGGGEEEEECCGGGCC--CCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCC
T ss_pred ccccCcccccCCcccccccCHHHhc--cccCceEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCccccccc
Confidence 2244555555432 3568999998 7889999999999999999999 8888999999999999999997532111
Q ss_pred -----cCCCCCccEEEeccccccCCCC--cEEEEEecCCCCcccceecCCCccccccccCcchhHHHHHHHHHHHH--HH
Q psy15216 183 -----NIQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLA--RI 253 (2602)
Q Consensus 183 -----dl~~~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~--~~ 253 (2602)
.....+.++++.|+|| ++++| +||++.++++++.+..... ....+++.....++.++++.. ..
T Consensus 230 ~~~~~~~~~~~~~i~~~s~sK-~~~~G~r~G~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~~~~~ 301 (417)
T 3g7q_A 230 IFSEARPLWNPNIILCMSLSK-LGLPGSRCGIIIANDKTITAIANMNG-------IISLAPGGMGPAMMCEMIKRNDLLR 301 (417)
T ss_dssp BCSCCCCCCCTTEEEEEESGG-GTCTTSCCEEEECCHHHHHHHHHHHH-------HHCCCCCSHHHHHHHHHHHTTCHHH
T ss_pred cccccccCCCCCEEEEEechh-ccCCCcceEEEEeCHHHHHHHHHhhc-------ceeeCCCcHHHHHHHHHHcCcchHH
Confidence 1122356789999999 56666 8999998877766654321 112234555555555555511 11
Q ss_pred hHHH-HHHHHHHHHHHHHHHHhhccC--ceEEeCCCCCCCCceEEEEEcc--cChhHHHHHh--CCeEEcccccCCCCCC
Q psy15216 254 EMKE-ELKRILFLQKRLYNGLMESIE--EIYINGDMNNRIPHNLNISFNF--IEGESLLMAI--KDIAVSSGSACTSASL 326 (2602)
Q Consensus 254 ~~~~-~~~~~~~l~~~l~~~L~~~~~--g~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~L--~gI~v~~g~~~~~~~~ 326 (2602)
...+ ..+++.++++.+.+.|.+.++ ++.+..+.. ....++.++. .+..++...| +||.+++|..|.++..
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~f~~~~~ 378 (417)
T 3g7q_A 302 LSETVIKPFYYQRVQQTIAIIRRYLSEERCLIHKPEG---AIFLWLWFKDLPITTELLYQRLKARGVLMVPGHYFFPGLD 378 (417)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHCCTTTCEEECCCB---SSEEEEECTTCSSCHHHHHHHHHHTTEECEEGGGGCTTBS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCceeeCCCc---ceEEEEEcCCCCCCHHHHHHHHHHCCEEEECchhhCCCCc
Confidence 1222 566677777788888766445 466654432 2344455553 4667777766 7999999988865310
Q ss_pred ChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 327 EPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 327 ~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
. ......+++|||++. +++++++++++|++.
T Consensus 379 ~----------~~~~~~~~iRis~~~--~~~~i~~~~~~l~~~ 409 (417)
T 3g7q_A 379 K----------PWPHTHQCMRMNYVP--EPDKIEAGVKILAEE 409 (417)
T ss_dssp S----------CCGGGGGEEEEESCS--CHHHHHHHHHHHHHH
T ss_pred c----------ccccCCCeEEEEecC--CHHHHHHHHHHHHHH
Confidence 0 000113799999985 899999999999864
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.2e-21 Score=254.92 Aligned_cols=319 Identities=15% Similarity=0.123 Sum_probs=231.3
Q ss_pred CCCCHHHHHHHHHHHhhc--cCCCCCccchhHHHHHHHHHHHHHHHHHHhC------CCC-CcEEEeCCHHHHHHHHHHh
Q psy15216 1403 TPIDPRVVDKMIPYLRVQ--FGNPASRNHIYGWTAEKAIEKARNEVAQLIY------ADP-REIIWTSGATESNNLAIKG 1473 (2602)
Q Consensus 1403 ~~~~~~v~eal~~~l~~~--~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g------~~~-~~iv~t~gaT~al~~al~~ 1473 (2602)
.+.++.+.+++.+.+... ..++... ...++|+.++++++ +++ ++|++|+|+++|+..++.+
T Consensus 35 ~~~~~~v~~a~~~~~~~~~~~~y~~~~----------g~~~l~~~la~~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~ 104 (410)
T 3e2y_A 35 ISPPSYVKEELSKAAFIDNMNQYTRGF----------GHPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGSLFNSIQG 104 (410)
T ss_dssp SCCCHHHHHHHHHHHTCGGGGSCCCTT----------CCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCccccCCCCCC----------ChHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHHHHHHH
Confidence 467889999999988642 2233220 13456667777665 566 7899999999999999999
Q ss_pred hhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccC-----------CCCCcChhHHHhhccCCceEEEEeccc
Q psy15216 1474 AAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK-----------NNGLITLSQLEEKICSDTILVSVMLVN 1542 (2602)
Q Consensus 1474 l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~-----------~~~~id~d~l~~~i~~~t~lv~l~~~~ 1542 (2602)
+. ++||+|+++.|.|+++...+... |.+++.++.+ .++.+|++++++++++++++|++++|+
T Consensus 105 ~~----~~gd~vl~~~p~~~~~~~~~~~~---g~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~ 177 (410)
T 3e2y_A 105 LV----DPGDEVIIMVPFYDCYEPMVRMA---GAVPVFIPLRSKPTDGMKWTSSDWTFDPRELESKFSSKTKAIILNTPH 177 (410)
T ss_dssp HC----CTTCEEEEEESCCTTHHHHHHHT---TCEEEEEECEECCCCSSCCBGGGEECCHHHHHTTCCTTEEEEEEESSC
T ss_pred hc----CCCCEEEEeCCCchhhHHHHHHc---CCEEEEEeccccccccccccccCCcCCHHHHHhhcCCCceEEEEeCCC
Confidence 86 89999999999999987766554 9999999875 245589999999999999999999999
Q ss_pred cccccccC---hHHHHHHhhhcCCEEEEecccccCc----ccccCCC----CCccEEEEccccccCCCc--eEEEEEecC
Q psy15216 1543 NEIGVIQP---ILEIGELCRSKGVIFHCDAAQAVGK----IDINIQN----YKVDLMSFSAHKIYGPKG--IGALYIRRN 1609 (2602)
Q Consensus 1543 n~tG~~~~---l~~I~~ia~~~gi~vivD~a~~~g~----~~~~l~~----~~~D~~v~S~~K~~gp~G--~G~l~~~~~ 1609 (2602)
||||.++| +++|+++|++||+++|+|++|+... .+.++.. .+.++++.|+||.+|++| +||++++++
T Consensus 178 nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~ 257 (410)
T 3e2y_A 178 NPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITIGSAGKTFSVTGWKLGWSIGPAH 257 (410)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEEHHHHSSCGGGCCEEEECCHH
T ss_pred CCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCCccCeEEEEecchhhcCCCCceEEEEEECHH
Confidence 99999974 8899999999999999999997422 1222221 234588899999888777 899999887
Q ss_pred CCCccccccccCCccccCCCCCcchhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCC
Q psy15216 1610 PRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRL-------ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDM 1682 (2602)
Q Consensus 1610 ~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~-------~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~ 1682 (2602)
+++.+..... ....+.+...+.++..+|+. ....+++..+++.++++++.+.|.+ . ++.+..+.
T Consensus 258 ~~~~~~~~~~-------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~ 328 (410)
T 3e2y_A 258 LIKHLQTVQQ-------NSFYTCATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRMVRLLNS-V-GLKPIVPD 328 (410)
T ss_dssp HHHHHHHHHH-------TTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHT-T-TCEEEBCS
T ss_pred HHHHHHHHHH-------hhccCCChHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHH-C-CCeecCCC
Confidence 6665543321 12335566666666677652 1335778888999999999999987 3 77765443
Q ss_pred CCCCCceEEEEEecCC------------cHHHHHhc---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecC
Q psy15216 1683 NNRIPHNLNISFNFIE------------GESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIG 1747 (2602)
Q Consensus 1683 ~~~~~~~~~~~~~~~~------------~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~ 1747 (2602)
.. ....+.+.... ..++...+ +||.+.+|..|.... ......+++|||++
T Consensus 329 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~------------~~~~~~~~iRis~~ 393 (410)
T 3e2y_A 329 GG---YFIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSK------------SKPHFEKLVRFCFI 393 (410)
T ss_dssp BS---SEEEEECGGGCCCCTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGSCTT------------THHHHTTEEEEECC
T ss_pred cc---EEEEEEchhhhcccccccccccCHHHHHHHHHHHcCEEEeCchhhCCCC------------CCCCCCCEEEEEEc
Confidence 22 22333333211 12444433 699999999885420 00112489999988
Q ss_pred CCCCHHHHHHHHHHHHH
Q psy15216 1748 RFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1748 ~~~t~edid~li~~L~~ 1764 (2602)
. +.+++++++++|++
T Consensus 394 ~--~~e~l~~~l~~l~~ 408 (410)
T 3e2y_A 394 K--KDSTLDAAEEIFRA 408 (410)
T ss_dssp C--CHHHHHHHHHHHHT
T ss_pred C--CHHHHHHHHHHHHh
Confidence 5 99999999999985
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.7e-22 Score=263.25 Aligned_cols=343 Identities=11% Similarity=0.022 Sum_probs=229.3
Q ss_pred eccCCCCCCCHHHHHHHHHHHhhccCC-------CCCccchhHHHHHHHHHHHHHHHHHHh------CCCCCcEEEeCCH
Q psy15216 1397 VFKDATTPIDPRVVDKMIPYLRVQFGN-------PASRNHIYGWTAEKAIEKARNEVAQLI------YADPREIIWTSGA 1463 (2602)
Q Consensus 1397 ~L~~~~~~~~~~v~eal~~~l~~~~~n-------p~~~~~~~~~~~~~~~~~lr~~ia~~~------g~~~~~iv~t~ga 1463 (2602)
.|.......++.+.+++.+.+.....+ ++...+..++.......++|+++++++ ++++++|++|+|+
T Consensus 36 ~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~ 115 (444)
T 3if2_A 36 MLGGGNPAKIDAVNELFLETYKALGNDNDTGKANSSAIISMANYSNPQGDSAFIDALVGFFNRHYDWNLTSENIALTNGS 115 (444)
T ss_dssp ECSCCCCCCCHHHHHHHHHHHHHHHSCSCTTCCCCHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSH
T ss_pred ccCCCCCCcccchHHHHHHHHHHHHhccccccccchhhhhhhccCCCCCCHHHHHHHHHHHHhhcCCCCCHHHEEEecCc
Confidence 444333334556666666666654444 420011222222233567888888887 5688899999999
Q ss_pred HHHHHHHHHhhhhhhccCCC--------------EEEEc-CCCCcchHHHHH---HHHhCCcEEEEeccCC-C----CCc
Q psy15216 1464 TESNNLAIKGAAHFYKKRGK--------------HIITV-QTEHKSVLDSIR---KLENDGFRVTYLKPKN-N----GLI 1520 (2602)
Q Consensus 1464 T~al~~al~~l~~~~~~~gd--------------~Vlv~-~~~~~s~~~~~~---~~~~~G~~v~~v~~~~-~----~~i 1520 (2602)
|+|+++++.++. ++|| +|+++ +|+|+++..... .+...|..+..++.+. + +.+
T Consensus 116 t~al~~~~~~l~----~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 191 (444)
T 3if2_A 116 QNAFFYLFNLFG----GAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHVEGQHFAAVLPHIDEVTHDGEEGFFKYRV 191 (444)
T ss_dssp HHHHHHHHHHSS----EEEECC-------CEEEEEEEESSSSCCGGGTTCCSSSCCEEECCCEEEEEEETTEEEEEEEEC
T ss_pred HHHHHHHHHHHh----CCCccccccccccccccceEEEeCCCCccchhhcccccchhhccCceEEecccccccCccccCC
Confidence 999999999987 7887 78886 899998765321 1233478888888775 2 368
Q ss_pred ChhHHHhh---ccCCceEEEEeccccccccccC---hHHHHHHhhhcCCEEEEecccccCccccc-----CCCCCccEEE
Q psy15216 1521 TLSQLEEK---ICSDTILVSVMLVNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQAVGKIDIN-----IQNYKVDLMS 1589 (2602)
Q Consensus 1521 d~d~l~~~---i~~~t~lv~l~~~~n~tG~~~~---l~~I~~ia~~~gi~vivD~a~~~g~~~~~-----l~~~~~D~~v 1589 (2602)
|+++|+++ ++++|++|++++|+||||.++| +++|+++|++||+++|+|++|+.+..... ....+.++++
T Consensus 192 d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~ 271 (444)
T 3if2_A 192 DFEALENLPALKEGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLIIDNAYGMPFPNIIYSDAHLNWDNNTILC 271 (444)
T ss_dssp CHHHHHTCHHHHTTCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCSCCCCCCCTTEEEE
T ss_pred CHHHHHHHHHhcCCCceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHCCCEEEEECCCCCcccccccccccccCCCCEEEE
Confidence 99999998 7889999999999999999999 88899999999999999999975322111 1223567999
Q ss_pred EccccccCCCc--eEEEEEecCCCCccccccccCCccccCCCCCcchhHHHHHHHHHHH--HHHHHHH-HHHHHHHHHHH
Q psy15216 1590 FSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRL--ARIEMKE-ELKRILFLQKR 1664 (2602)
Q Consensus 1590 ~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~--~~~~~~~-~~~~~~~l~~~ 1664 (2602)
.|+||+ +++| +||++.++++++.+...... ...+.+...+.++..++.. ......+ ..+++.++++.
T Consensus 272 ~S~sK~-~~~G~r~G~~~~~~~l~~~~~~~~~~-------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 343 (444)
T 3if2_A 272 FSLSKI-GLPGMRTGIIVADAKVIEAVSAMNAV-------VNLAPTRFGAAIATPLVANDRIKQLSDNEIKPFYQKQATL 343 (444)
T ss_dssp EESTTT-TCGGGCCEEEECCHHHHHHHHHHHHH-------HHSSCCCHHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHH
T ss_pred echhhc-cCCCCceEEEEECHHHHHHHHHHHHh-------ccCCCChHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHH
Confidence 999996 5555 89999887666555432211 0123344445555455551 1122222 55666777777
Q ss_pred HHHHHhhcCC--cEEEeCCCCCCCCceEEEEEec--CCcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCcccc
Q psy15216 1665 LYNGLMESIE--EIYINGDMNNRIPHNLNISFNF--IEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELA 1738 (2602)
Q Consensus 1665 l~~~L~~~~~--gl~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~ 1738 (2602)
+.+.|.+.++ ++.+..+.. .....+.++. .+..++...| +||.+++|..|......++ ....
T Consensus 344 ~~~~l~~~l~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~~---------~~~~ 411 (444)
T 3if2_A 344 AVKLLKQALGDYPLMIHKPEG---AIFLWLWFKDLPISTLDLYERLKAKGTLIVPSEYFFPGVDVSD---------YQHA 411 (444)
T ss_dssp HHHHHHHHSSSSSEEEECCCB---SSEEEEEETTCSSCHHHHHHHHHHTTEECEEGGGSCTTCCCTT---------CSGG
T ss_pred HHHHHHHhcccCCceEecCCc---cEEEEEEcCCCCCCHHHHHHHHHHCCeEEecchhhcCCCCCcc---------cccC
Confidence 7777766444 456554322 2334455553 4566777666 8999999998864310000 0122
Q ss_pred CCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1739 HSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1739 ~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
.+++|||++. +.+++++++++|++.
T Consensus 412 ~~~iRis~~~--~~e~i~~~l~~l~~~ 436 (444)
T 3if2_A 412 HECIRMSIAA--DEQTLIDGIKVIGEV 436 (444)
T ss_dssp GSEEEEESSS--CHHHHHHHHHHHHHH
T ss_pred CCeEEEEEeC--CHHHHHHHHHHHHHH
Confidence 4789999996 899999999999974
|
| >2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.8e-21 Score=250.87 Aligned_cols=304 Identities=12% Similarity=0.077 Sum_probs=214.3
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHH-HHhCCcEEEEeccC
Q psy15216 1437 KAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDGFRVTYLKPK 1515 (2602)
Q Consensus 1437 ~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~-~~~~G~~v~~v~~~ 1515 (2602)
....++|+++++++|.+ ++++++|+|+|++.++.++. ++||+|+++.++|+++...+.. +...|+++++++.
T Consensus 56 ~~~~~l~~~la~~~g~~--~~~~~~~gt~a~~~al~~l~----~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~- 128 (412)
T 2cb1_A 56 PTAKALEERLKALEGAL--EAVVLASGQAATFAALLALL----RPGDEVVAAKGLFGQTIGLFGQVLSLMGVTVRYVDP- 128 (412)
T ss_dssp HHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHTTC----CTTCEEEEETTCCHHHHHHHHHTTTTTTCEEEEECS-
T ss_pred hHHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHHh----CCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECC-
Confidence 45789999999999975 89999999999999999986 7999999999999988777654 4556999999975
Q ss_pred CCCCcChhHHHhhccCCceEEEEeccccccccccChHHHHHHhhhcCCEEEEecccccCcccccCCCCCccEEEEccccc
Q psy15216 1516 NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKI 1595 (2602)
Q Consensus 1516 ~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K~ 1595 (2602)
|+++|+++++++|++|++++++||||.+.|+++|.++|++||+++|+|++|+.+.........++|++++|+||+
T Consensus 129 -----~~~~l~~~i~~~~~~v~~~~~~n~~G~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~~~~~~~di~~~S~~K~ 203 (412)
T 2cb1_A 129 -----EPEAVREALSAKTRAVFVETVANPALLVPDLEALATLAEEAGVALVVDNTFGAAGALCRPLAWGAHVVVESLTKW 203 (412)
T ss_dssp -----SHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGTTTTSCCGGGGTCSEEEEETTTT
T ss_pred -----CHHHHHHHhccCCeEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEECCCccccccCCccccCCeEEEECCccc
Confidence 389999999999999999999999999999999999999999999999999887222222245789999999996
Q ss_pred c-CCCc-eEEEEEecCCCC-----cccc-ccccC---------Ccccc------CCCCC-cchhHHHHHHHHHHHHHHHH
Q psy15216 1596 Y-GPKG-IGALYIRRNPRT-----RIEA-QIHGG---------GHEYG------LRSGT-LATHQIVGMGEAFRLARIEM 1651 (2602)
Q Consensus 1596 ~-gp~G-~G~l~~~~~~~~-----~l~~-~~~g~---------~~~~~------~~~gt-~~~~~~~al~~aL~~~~~~~ 1651 (2602)
+ +|.+ +|++++.++... .+.+ ...|+ ..... ...|. .+....+....+++ .+
T Consensus 204 ~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~----~l 279 (412)
T 2cb1_A 204 ASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPWEALRARCFPERVRTLGLSLCGMALSPFNAYLLFQGLE----TV 279 (412)
T ss_dssp TTCSSCCCCEEEEECCCSGGGGSGGGGCC-------HHHHGGGHHHHHHHHHHTTTTCCCCCHHHHHHHHHHGG----GH
T ss_pred ccCCCCcEEEEEEeccccccccccccccccccccchhhccchHHHHHHHHHHHHHhcCCCCChHHhHHHHcCCc----hH
Confidence 6 4555 788887663211 1111 10110 00000 00121 12211111112222 23
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCcEEEe-CCCC-------------CCCCceEEEEEecCCcHHHHHhc--CCEEEcccc
Q psy15216 1652 KEELKRILFLQKRLYNGLMESIEEIYIN-GDMN-------------NRIPHNLNISFNFIEGESLLMAI--KDIAVSSGS 1715 (2602)
Q Consensus 1652 ~~~~~~~~~l~~~l~~~L~~~~~gl~i~-~~~~-------------~~~~~~~~~~~~~~~~~~~~~~L--~gI~v~~g~ 1715 (2602)
....++..++.+++.+.|.+ .+++... .|.. ...+.+..|.+ + +.+.+...+ .+|.+ .++
T Consensus 280 ~~~~~~~~~~~~~l~~~L~~-~~~v~~v~~p~~~~~p~~~~~~~~~~~~~~iv~~~~-~-~~~~~~~~l~~~~i~~-~~s 355 (412)
T 2cb1_A 280 ALRVARMSETARFLAERLQG-HPKVKALRYPGLPEDPAHRNARKYLASGGPILTLDL-G-DLERASRFLGAIRLLK-AAN 355 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-CTTCSEEECTTSTTCTTHHHHHHHCSSSCSEEEEEC-S-SHHHHHHHHHHCSSEE-CSC
T ss_pred HHHHHHHHHHHHHHHHHHHc-CCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEe-C-CHHHHHHHHHhCCeee-ecc
Confidence 45556667888999999987 6777633 2221 12345566666 4 444444444 68888 773
Q ss_pred ---------ccCCCC--CChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1716 ---------ACTSAS--LEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1716 ---------~~~~~~--~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
+|.... ..++..+..+|+. .+.||+|++.+++.++|++++++|++
T Consensus 356 ~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~----~~~iR~s~g~~~~~~~i~~l~~al~~ 411 (412)
T 2cb1_A 356 LGDARTLLVHPWTTTHSRLKEEARLQAGVT----PGLVRVSVGLEDPLDLLALFEEALEA 411 (412)
T ss_dssp CSCSSCEEECTTTTTTTTSCHHHHHHTTCC----TTEEEEECCSSCHHHHHHHHHHHHHC
T ss_pred cCCCcceeecCcccccccCCHHHHHhcCCC----CCeEEEEeccCCHHHHHHHHHHHHhh
Confidence 554332 1345666677775 38999999999999999999999974
|
| >3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1e-21 Score=256.04 Aligned_cols=330 Identities=15% Similarity=0.100 Sum_probs=230.0
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCC
Q psy15216 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK 87 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd 87 (2602)
..++.+.+++.+.+...+.. . ..+...++|+.+++++|.+ ++++++|+|+|+++++.++. +++||
T Consensus 33 ~~~~~~~~a~~~~~~~~~~~-~---------~~~~~~~l~~~la~~~~~~--~~i~~~~gt~al~~~l~~~~---~~~gd 97 (391)
T 3dr4_A 33 RLDGNERDYVLECMDTTWIS-S---------VGRFIVEFEKAFADYCGVK--HAIACNNGTTALHLALVAMG---IGPGD 97 (391)
T ss_dssp CCCSSHHHHHHHHHHHTCCS-S---------CSHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHT---CCTTC
T ss_pred CCCHHHHHHHHHHHHcCCcc-C---------CChHHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHcC---CCCcC
Confidence 45678888988887653211 0 1135788999999999976 88999999999999999983 27999
Q ss_pred EEEEcCCCCcccHHHHHHHHhCCcEEEEeccC-CCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHhcC
Q psy15216 88 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPK-NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKG 166 (2602)
Q Consensus 88 ~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~-~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~~g 166 (2602)
+|+++.++|+++...+... |++++.++++ +++.+|++++++++++++++|+ ++||||.+.|+++|.++|++||
T Consensus 98 ~vl~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~---~~n~tG~~~~~~~i~~l~~~~~ 171 (391)
T 3dr4_A 98 EVIVPSLTYIASANSVTYC---GATPVLVDNDPRTFNLDAAKLEALITPRTKAIM---PVHLYGQICDMDPILEVARRHN 171 (391)
T ss_dssp EEEEESSSCTHHHHHHHHT---TCEEEEECBCTTTCSBCGGGSGGGCCTTEEEEC---CBCGGGCCCCHHHHHHHHHHTT
T ss_pred EEEECCCchHHHHHHHHHC---CCEEEEEecCccccCcCHHHHHHhcCCCceEEE---EECCCCChhhHHHHHHHHHHcC
Confidence 9999999999998777655 9999999988 4678999999999999999888 4678999999999999999999
Q ss_pred CEEEEecccccccccccC--CCCCccEEEec--cccccCCCCcEEEEEecC-CCCcccceecCCCcc-cccc---cc-Cc
Q psy15216 167 VIFHCDAAQAVGKIDINI--QNYKVDLMSFS--AHKIYGPKGIGALYIRRN-PRTRIEAQIHGGGHE-YGLR---SG-TL 236 (2602)
Q Consensus 167 ~~livD~a~a~g~~~~dl--~~~~~D~~~~S--~~K~~Gp~G~G~l~~~~~-~~~~l~~~~~g~~~~-~~~~---~g-t~ 236 (2602)
+++|+|++|+.|....+. ..+ .|+.++| .||++++...|+++.+++ +.+.+.+...++... ..+. .| ..
T Consensus 172 ~~li~D~a~~~g~~~~~~~~~~~-~di~~~S~s~~K~l~~g~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~ 250 (391)
T 3dr4_A 172 LLVIEDAAEAVGATYRGKKSGSL-GDCATFSFFGNAIITTGEGGMITTNDDDLAAKMRLLRGQGMDPNRRYWFPIVGFNY 250 (391)
T ss_dssp CEEEEECTTCTTCEETTEETTSS-SSEEEEECBTTSSSCCBSCEEEEESCHHHHHHHHHHHBTTCCTTSTTCCSSCCCBC
T ss_pred CEEEEECcccccceECCeeeccc-CCEEEEECCCCCcCCcCCeEEEEECCHHHHHHHHHHHhcCCCCCCccccccccccc
Confidence 999999999987654332 222 3666666 558665433677777653 444444443322210 0010 11 11
Q ss_pred chhHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCC--CCC--CCCceEEEEEcc---cChhHHHH
Q psy15216 237 ATHQIVGMGEAFRL-ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGD--MNN--RIPHNLNISFNF---IEGESLLM 308 (2602)
Q Consensus 237 ~~~~~~al~~al~~-~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~--~~~--~~~~~~~~~~~~---~~~~~~~~ 308 (2602)
.. ..+.+++.+ ...++++..++.+++++++.+.|.+ . ++.+..+ +.. .....+.+.++. .+..++.+
T Consensus 251 ~~---~~l~aa~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 325 (391)
T 3dr4_A 251 RM---TNIQAAIGLAQLERVDEHLAARERVVGWYEQKLAR-L-GNRVTKPHVALTGRHVFWMYTVRLGEGLSTTRDQVIK 325 (391)
T ss_dssp BC---CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHGG-G-TTSEECCCCCTTSCCCCSSEEEEECSSCSSCHHHHHH
T ss_pred CC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-C-CccccCcCCCCCCcceeEEEEEEECCccchhHHHHHH
Confidence 22 222233332 2345778889999999999999988 4 7776654 222 222344555553 45677777
Q ss_pred Hh--CCeEEcccc---cCCCCCCChHHHH---HHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 309 AI--KDIAVSSGS---ACTSASLEPSYVL---RALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 309 ~L--~gI~v~~g~---~~~~~~~~~~~~~---~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
.| +||.++++. +|.+. +.. ..++..+....+.+|++++.++|++||++++++|++.
T Consensus 326 ~L~~~GI~v~~~~~p~~~~~~-----~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~ 389 (391)
T 3dr4_A 326 DLDALGIESRPVFHPMHIMPP-----YAHLATDDLKIAEACGVDGLNLPTHAGLTEADIDRVIAALDQV 389 (391)
T ss_dssp HHHHTTCCCEECCCCGGGSGG-----GGGGCCTTCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTT
T ss_pred HHHHCCCceeecCCccccChh-----hhhcCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHH
Confidence 77 799999775 33321 110 0011111222468999999999999999999999863
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-21 Score=254.87 Aligned_cols=321 Identities=15% Similarity=0.122 Sum_probs=222.5
Q ss_pred CCCCCC-CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHH--hC-CCCCcEEEeCCHHHHHHHHHHh
Q psy15216 2 DYSATT-PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQL--IY-ADPREIIWTSGATESNNLAIKG 77 (2602)
Q Consensus 2 d~a~~~-~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~--~g-~~~~~Iv~t~g~T~al~~~~~~ 77 (2602)
+.+... ++++.+.+++.+.+......... +.++ ......++|++++++ +| +++++|++++|+++++++++..
T Consensus 39 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~--~~y~--~~~g~~~lr~~la~~l~~g~~~~~~v~~~~G~~~al~~~~~~ 114 (400)
T 3asa_A 39 SIGDTTQPLNASVAEAFASSIARLSSPTTC--RGYG--PDFGLPALRQKLSEDFYRGFVDAKEIFISDGAKVDLFRLLSF 114 (400)
T ss_dssp SSCCCCCCCCHHHHHHHHHHHHHHTSSSCC--CCCC--CTTCCHHHHHHHHHTTSTTSSCGGGEEEESCHHHHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHhcccccccc--cCCC--CCCCCHHHHHHHHHHHHcCCCCHHHEEEccChHHHHHHHHHH
Confidence 334443 67889999999988653211111 1111 112356789999999 57 6788999999999999987643
Q ss_pred cccccccCCCEEEEcCCCCcccHHHHHHHHhCCcE-EEEeccCCCCccChHHHHhhccCCceEEEEecccCccccccc--
Q psy15216 78 AAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFR-VTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP-- 154 (2602)
Q Consensus 78 l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~-v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~-- 154 (2602)
. ++||+|+++.|.|+++...+.. .|++ ++.++.++++.++.+ +++. +++++|++++|+||||.++|
T Consensus 115 -~----~~gd~Vl~~~p~y~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~-l~~~--~~~~~v~l~~p~nptG~~~~~~ 183 (400)
T 3asa_A 115 -F----GPNQTVAIQDPSYPAYLDIARL---TGAKEIIALPCLQENAFFPE-FPED--THIDILCLCSPNNPTGTVLNKD 183 (400)
T ss_dssp -H----CSSCEEEEEESCCHHHHHHHHH---TTCSEEEEEECCGGGTTCCC-CCTT--CCCSEEEEESSCTTTCCCCCHH
T ss_pred -c----CCCCEEEECCCCcHHHHHHHHH---cCCcceEecccchhcCcccC-hhhc--cCccEEEEeCCCCCCCCcCCHH
Confidence 3 5899999999999997766544 4887 888887653322221 2221 67899999999999999998
Q ss_pred -HHHHHHHHHhcCCEEEEecccc-cc---cccccCCCC----CccEEEeccccccCCCC--cEEEEEecCCC-------C
Q psy15216 155 -ILEIGELCRSKGVIFHCDAAQA-VG---KIDINIQNY----KVDLMSFSAHKIYGPKG--IGALYIRRNPR-------T 216 (2602)
Q Consensus 155 -l~~I~~la~~~g~~livD~a~a-~g---~~~~dl~~~----~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~-------~ 216 (2602)
+++|+++|+++|+++|+|++|+ +. ..+..+..+ +.++++.|+||.+|++| +||+++++++. .
T Consensus 184 ~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~GlriG~~~~~~~~~~~~~~~~~ 263 (400)
T 3asa_A 184 QLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDARFCAIEINSFSKPLGFAGIRLGWTVIPQELTYADGHFVI 263 (400)
T ss_dssp HHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECCGGGTTTTCCCEEEECCTTCBCTTSCBHH
T ss_pred HHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCCCCCCceEEEecchhhcCCcchheeEEeeChhhccchhhhHH
Confidence 5568889999999999999998 32 222333322 23588999999999888 79999988763 2
Q ss_pred cccceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEE
Q psy15216 217 RIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNI 296 (2602)
Q Consensus 217 ~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~ 296 (2602)
.+.... .....++++.+...++.++|+.. ++++.+++++++++++.+.|.+ . ++.+..+.. ..++.+
T Consensus 264 ~~~~~~------~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~---~~~~~~ 330 (400)
T 3asa_A 264 QDWERF------LSTTFNGASIPAQEAGVAGLSIL--PQLEAIHYYRENSDLLRKALLA-T-GFEVFGGEH---APYLWV 330 (400)
T ss_dssp HHHHHH------HHHHCCCCCHHHHHHHHHHHHHT--TTCHHHHHHHHHHHHHHHHHHH-T-TCEEEECSS---SSEEEE
T ss_pred HHHHHH------hccCccCCChHHHHHHHHHhCcH--HHHHHHHHHHHHHHHHHHHHHH-C-CCeeeCCCC---ceEEEE
Confidence 221100 01112456777777666676632 5678888999999999999987 3 777764432 233444
Q ss_pred E-Ec-ccChhHHHHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 297 S-FN-FIEGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 297 ~-~~-~~~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
. ++ ..+..++...| +||.+++|..|.+. ..+++||++ +++++++++++++|++.
T Consensus 331 ~~~~~~~~~~~~~~~l~~~~gv~v~~g~~f~~~-----------------~~~~iRis~--~~~~e~i~~~l~~l~~~ 389 (400)
T 3asa_A 331 KPTQANISDRDLFDFFLREYHIAITPGIGFGRS-----------------GSGFVRFSS--LGKREDILAACERLQMA 389 (400)
T ss_dssp ECCCTTCCTTTHHHHHHHHHSEECEEGGGGCGG-----------------GTTCEEEEC--CSCHHHHHHHHHHHHC-
T ss_pred eccCCCCCHHHHHHHHHHhCCEEEeChhHhCCC-----------------CCCEEEEEe--eCCHHHHHHHHHHHHHH
Confidence 4 44 23455566555 49999999877531 137899994 57999999999999863
|
| >4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.7e-21 Score=248.74 Aligned_cols=328 Identities=13% Similarity=0.040 Sum_probs=211.2
Q ss_pred ccCCceEEEEEcCcccEEEEEEE--CCeeEEEeCCCCCccccEEEEEecCCcEEEcHHHHhhhccCCCCchhhhhhhhCC
Q psy15216 633 VKNKCVSIGIDFGTTNSLVAIVR--NNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIAR 710 (2602)
Q Consensus 633 ~~~~~~vvGID~GTt~s~va~~~--~~~~~ii~~~~g~~~~PS~v~~~~~~~~~vG~~A~~~~~~~p~~~~~~~K~~lg~ 710 (2602)
|..+.+++|||+|||+.++.+.+ +++.+++. -...||- .. .+| .++-..+..+..+ ..+....+..|.
T Consensus 4 m~~~~~ivglDIGts~I~~vv~~~~~~~~~i~g----~~~~~s~-gv-~~G-~I~di~~~~~~I~---~av~~ae~~~g~ 73 (419)
T 4a2a_A 4 LSKTVFYTSIDIGSRYIKGLVLGKRDQEWEALA----FSSVKSR-GL-DEG-EIKDAIAFKESVN---TLLKELEEQLQK 73 (419)
T ss_dssp ---CCEEEEEEECSSEEEEEEEEC----CEEEE----EEEEECC-SE-ETT-EESBHHHHHHHHH---HHHHHHHHHHTS
T ss_pred CccCCEEEEEEccCCEEEEEEEEEcCCCCEEEE----EEEeccC-Ce-eCC-EEEcHHHHHHHHH---HHHHHHHHHcCC
Confidence 44567999999999999988775 22224442 2233432 11 232 3443333322221 334444555565
Q ss_pred CCCC-CCCCCCCe--eeecCCCceEEEEeCceeCHHHHHHHHHHHHHHHHHHhhcCccceEEE-EEcCCC----------
Q psy15216 711 DLKN-INTNSFPY--DFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVI-TVPAYF---------- 776 (2602)
Q Consensus 711 ~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~Vi-TVPa~f---------- 776 (2602)
+... +......- .+...+....+...++.++.+++-..+ +.+... ..+....++ .+|-.|
T Consensus 74 ~i~~~v~v~i~g~~~~i~s~~~~~~i~~~~~~i~~~di~~~i-----~~a~~~-~~p~d~~~l~~~p~~f~vDg~~~i~~ 147 (419)
T 4a2a_A 74 SLRSDFVISFSSVSFEREDTVIERDFGEEKRSITLDILSEMQ-----SEALEK-LKENGKTPLHIFSKRYLLDDERIVFN 147 (419)
T ss_dssp CCCSEEEEEECCTTCEEEEEEEEEECCSSCEECCHHHHHHHH-----HHHHHH-HSCTTEEEEEEEEEEEEETTTEEESC
T ss_pred CcCceEEEEEcCCcCeEEEEEeEEEEeCCCCEECHHHHHHHH-----HHhhhh-cCCCCCEEEEEEeeEEEECCccCcCC
Confidence 5433 21110000 111000000111123466666665443 333322 223333333 233322
Q ss_pred ------------------CHHHHHHHHHHHHHcCCceEEEechhHHHHHHhhhccCcccceEEEEEeCCceEEEEEEEEE
Q psy15216 777 ------------------NDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFK 838 (2602)
Q Consensus 777 ------------------~~~qr~~~~~Aa~~AGl~~~~li~EPtAAAl~y~~~~~~~~~~vlV~D~GGGT~Dvsv~~~~ 838 (2602)
.....+.+.+|++.|||++..++.||+|||++|.... .++..++|+|+||||||+++++
T Consensus 148 P~Gm~g~~l~~~v~~v~~~~~~v~n~~~~~~~AGL~v~~lv~ep~Aaa~a~l~~~-~~~~gv~vvDiGggttdisi~~-- 224 (419)
T 4a2a_A 148 PLDMKASKIAIEYTSIVVPLKVYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLTTP-EKDRGVVVVNLGYNFTGLIAYK-- 224 (419)
T ss_dssp CTTCEESEEEEEEEEEEEEHHHHHHHHHHHHTTSCSCEEEEEHHHHHHHHHCCHH-HHHHCEEEEEECSSSEEEEEEE--
T ss_pred CCCCcccEEEEEEEEEEEeHHHHHHHHHHHHHcCCcEEEEEEHHHHHHHHhhccc-cccCCEEEEEECCCcEEEEEEE--
Confidence 2346688999999999999999999999999885432 2456899999999999999987
Q ss_pred CCEEEEEEEecCCCCcchHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHcccc-----cceEEEEEecCCceEE
Q psy15216 839 NGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQ-----SSVKLNVKLSDKKIVN 913 (2602)
Q Consensus 839 ~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~l~~~~e~~K~~LS~~-----~~~~~~i~~~~~~~~~ 913 (2602)
++.+.. .++.++||++||+.|...+.- ....||++|+.++.. .+..+.++..++ ...
T Consensus 225 ~g~~~~---~~~i~~GG~~it~dIa~~l~~--------------~~~~AE~iK~~~g~a~~~~~~~~~i~v~~~~~-~~~ 286 (419)
T 4a2a_A 225 NGVPIK---ISYVPVGMKHVIKDVSAVLDT--------------SFEESERLIITHGNAVYNDLKEEEIQYRGLDG-NTI 286 (419)
T ss_dssp TTEEEE---EEEESCCHHHHHHHHHHHHTC--------------CHHHHHHHHHHHCCSCCTTCCCCEEEEECTTS-CSE
T ss_pred CCEEEE---EEecccHHHHHHHHHHHHHCC--------------CHHHHHHHHHHhccCcccCCCCceEEEeecCC-ccc
Confidence 555433 345789999999999875432 247899999998752 345667765444 356
Q ss_pred EEeCHHHHHHHHHHHHHHHHHHHHHHHHHcCC------CccccceEEEecCccchHHHHHHHHhhccCccc--C-----c
Q psy15216 914 ITIDMKQFFTITQHLVNRTILLSSKALMDANL------TIKDINNVILVGGSTRMKHIHEGVSNFFKTTLL--T-----S 980 (2602)
Q Consensus 914 ~~itr~~fe~l~~~~~~~~~~~i~~~l~~a~~------~~~~i~~V~LvGG~sr~P~v~~~l~~~f~~~~~--~-----~ 980 (2602)
.+++|++|+++++|.++++.+.+++.|+.++. ....++.|+|+||+|++|.+++.+++.|+.++. . +
T Consensus 287 ~~is~~~l~~ii~p~veei~~~V~~~L~~~~~~~p~~~~~~~~~~IvLtGG~s~lpgl~e~~~~~~g~~vri~~~~~~~p 366 (419)
T 4a2a_A 287 KTTTAKKLSVIIHARLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATEVFKSPVRTGCYANSDR 366 (419)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC--------TTCEEEESGGGGSTTHHHHHHHHHTSCEEECCGGGSSS
T ss_pred eEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccCCEEEEECchhchhhHHHHHHHHHCCCeEEEecCCCCc
Confidence 88999999999999999999999999999987 355689999999999999999999999976543 2 1
Q ss_pred ----------CCcchHhHHHHHHHhHH
Q psy15216 981 ----------IDPDKAVVFGAAIQANF 997 (2602)
Q Consensus 981 ----------~~p~~aVa~GAa~~a~~ 997 (2602)
.+|..+++.|.++++..
T Consensus 367 ~~~~~~~~~~~~P~~~t~~Gl~~~~~~ 393 (419)
T 4a2a_A 367 PSIINADEVANDPSFAAAFGNVFAVSE 393 (419)
T ss_dssp CCCBTCHHHHTCGGGHHHHHTTCC---
T ss_pred hhccCcccccCCchHHHHHHHHHHHhh
Confidence 48999999999998743
|
| >1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.7e-21 Score=253.96 Aligned_cols=330 Identities=14% Similarity=0.155 Sum_probs=231.4
Q ss_pred CCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCE
Q psy15216 1405 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKH 1484 (2602)
Q Consensus 1405 ~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~ 1484 (2602)
.++++.+++.+.++..+.++. + ....++|+.+++++|. +++++++|+|+|++.++.++. +++||+
T Consensus 10 ~~~~v~~a~~~~~~~~~~~~~------g----~~~~~l~~~la~~~~~--~~v~~~~ggt~al~~~~~~l~---~~~gd~ 74 (394)
T 1o69_A 10 MGGNELKYIEEVFKSNYIAPL------G----EFVNRFEQSVKDYSKS--ENALALNSATAALHLALRVAG---VKQDDI 74 (394)
T ss_dssp --CCHHHHHHHHHHHTTTSCT------T----HHHHHHHHHHHHHHCC--SEEEEESCHHHHHHHHHHHTT---CCTTCE
T ss_pred CCHHHHHHHHHHHHcCCccCC------C----hHHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHHcC---CCCCCE
Confidence 345778888888865332211 1 3468899999999997 589999999999999999982 279999
Q ss_pred EEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccC---CceEEEEeccccccccccChHHHHHHhhhc
Q psy15216 1485 IITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS---DTILVSVMLVNNEIGVIQPILEIGELCRSK 1561 (2602)
Q Consensus 1485 Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~---~t~lv~l~~~~n~tG~~~~l~~I~~ia~~~ 1561 (2602)
|+++.++|+++...+... |++++.++.+.++.+|+++|++++++ ++++|++++ |||...|+++|.++|++|
T Consensus 75 Vl~~~~~~~~~~~~~~~~---g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~v~~~~---~~G~~~~l~~i~~l~~~~ 148 (394)
T 1o69_A 75 VLASSFTFIASVAPICYL---KAKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILTH---LYGNAAKMDEIVEICKEN 148 (394)
T ss_dssp EEEESSSCGGGTHHHHHT---TCEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEEC---GGGCCCCHHHHHHHHHHT
T ss_pred EEECCCccHHHHHHHHHc---CCEEEEEEeCCCCCcCHHHHHHHHhcccCCceEEEEEC---CCCChhhHHHHHHHHHHc
Confidence 999999999998877665 99999999987788999999999986 799999986 699999999999999999
Q ss_pred CCEEEEecccccCcccccCC--C-CCccEEEEccccccCCCceEEEEEe-cCCCCccccccccCC--------ccccCCC
Q psy15216 1562 GVIFHCDAAQAVGKIDINIQ--N-YKVDLMSFSAHKIYGPKGIGALYIR-RNPRTRIEAQIHGGG--------HEYGLRS 1629 (2602)
Q Consensus 1562 gi~vivD~a~~~g~~~~~l~--~-~~~D~~v~S~~K~~gp~G~G~l~~~-~~~~~~l~~~~~g~~--------~~~~~~~ 1629 (2602)
|+++|+|++|+.|....+.. . .++|++++|.||.+++.++|+++++ +++++.+.+...++. ...++..
T Consensus 149 ~~~li~Dea~~~g~~~~~~~~~~~~~~~~~s~s~~K~l~~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~g~~~ 228 (394)
T 1o69_A 149 DIVLIEDAAEALGSFYKNKALGTFGEFGVYSYNGNKIITTSGGGMLIGKNKEKIEKARFYSTQARENCLHYEHLDYGYNY 228 (394)
T ss_dssp TCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCCSSCEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSSCCCBC
T ss_pred CCEEEEECcCcccceeCCcccccccCcEEEEEeCCccCCCCCceEEEECCHHHHHHHHHHHHhccccCccccccccCccc
Confidence 99999999999765433221 1 2467888888997777779999996 565555544322111 1123334
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCC--CCCceEEEEEecC----------
Q psy15216 1630 GTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNN--RIPHNLNISFNFI---------- 1697 (2602)
Q Consensus 1630 gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~--~~~~~~~~~~~~~---------- 1697 (2602)
++++....+++.. ++ .+++..++.+++++++.+.|.+ . +.+.++... ....+..+.++..
T Consensus 229 ~~~~~~aa~~l~~-l~----~l~~~~~~~~~~~~~l~~~L~~-~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 300 (394)
T 1o69_A 229 RLSNVLGAIGVAQ-ME----VLEQRVLKKREIYEWYKEFLGE-Y--FSFLDELENSRSNRWLSTALINFDKNELNACQKD 300 (394)
T ss_dssp BCCHHHHHHHHHH-HT----THHHHHHHHHHHHHHHHHHHTT-T--EECCCCCTTEECCCSSEEEEESCCGGGSCCCCEE
T ss_pred CcCHHHHHHHHHH-HH----HHHHHHHHHHHHHHHHHHHhcc-c--ccccCCCCCCcceeEEEEEEecchhhcccccccc
Confidence 4555555554432 33 3456778889999999999987 3 655543221 1112345555521
Q ss_pred ------------CcHHHHHhc--CCEEEccccccCCCCCChhHHHH---HcCCCccccCCeEEEecCCCCCHHHHHHHHH
Q psy15216 1698 ------------EGESLLMAI--KDIAVSSGSACTSASLEPSYVLR---ALGCNDELAHSSIRFTIGRFTTEKEIDFTIK 1760 (2602)
Q Consensus 1698 ------------~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~iRls~~~~~t~edid~li~ 1760 (2602)
+..++...| +||.++++..|... .+.+... .+..+.....+.+|+++++++|.+|++++++
T Consensus 301 ~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~edi~~~~~ 378 (394)
T 1o69_A 301 INISQKNITLHPKISKLIEDLKNKQIETRPLWKAMHT--QEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVYEISK 378 (394)
T ss_dssp EECCCCCCCCCHHHHHHHHHHHHTTCCCBCCCCCGGG--CGGGTTCEEEECSHHHHHHHHEEEECCCTTCCHHHHHHHHH
T ss_pred ccccccccccccCHHHHHHHHHHcCCcccccCCcccc--chhhhccCCCCChHHHHHhcCeEEccCCCCCCHHHHHHHHH
Confidence 345666666 89999988544211 1111000 0011111122567888899999999999999
Q ss_pred HHHHh
Q psy15216 1761 LLKMK 1765 (2602)
Q Consensus 1761 ~L~~~ 1765 (2602)
+|++.
T Consensus 379 ~l~~~ 383 (394)
T 1o69_A 379 LILKS 383 (394)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99974
|
| >3dob_A Heat shock 70 kDa protein F44E5.5; structural genomics, APC90015.11, peptide-binding domain, HS 2, protein structure initiative; 2.39A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.87 E-value=7.2e-22 Score=213.95 Aligned_cols=124 Identities=42% Similarity=0.682 Sum_probs=116.9
Q ss_pred eeccccccceEEeeccEEEEEEecCCcCCCCcEEEEEeecccccceeEEEeecCcccccCCceeEEEEeeCCCCCCCCcc
Q psy15216 2406 LLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRA 2485 (2602)
Q Consensus 2406 ~~d~~~~~~gi~~~~~~~~~ii~k~t~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~~~~~~~g~~ 2485 (2602)
+.|++|+|||+++.+|.|.+||+||++||+++++.|+|..|||+.+.|.||||++..+.+|.+||+|.|+|+||+|+|.+
T Consensus 2 ~~Dv~p~slGie~~gg~~~~lI~rnt~iP~~k~~~f~t~~dnQ~~v~I~VyqGe~~~~~dn~~LG~f~l~gipp~p~G~~ 81 (152)
T 3dob_A 2 NADVAPLSLGIETAGGVMTNLIDRNTRIPTKACKTFTTYADNQPGVSIQVYEGERAMTRDNHRLGTFELSGIPPAPRGVP 81 (152)
T ss_dssp --CBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCCCCTTCC
T ss_pred ceeeecceEEEEEcCCEEEEEEECcCccCEEEEEEEEECCCCceEEEEEEEEcCccccccCceeEEEEEeCCCCCCCCCc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEEcCCccEEEEEEeecCCcEEEEEEecC-CCCChHHHhc
Q psy15216 2486 RIKVTYQVDADGLLSIFAYEKISGKKKFITIKPF-YNMNLDEIKN 2529 (2602)
Q Consensus 2486 ~i~v~f~id~~g~l~V~a~~~~tg~~~~~~i~~~-~~l~~~ei~~ 2529 (2602)
+|+|+|+||.||+|+|+|.++.||++.+++|... ++||++||++
T Consensus 82 ~IeVtf~iD~nGiL~Vsa~d~~tg~~~~i~I~~~~~~Ls~~ei~~ 126 (152)
T 3dob_A 82 QIEVTFNIDANGILNVSAEDKSTGKSNRITIQNEKGRLTQSDIDR 126 (152)
T ss_dssp CEEEEEEECTTCCEEEEEEETTTCCEEEEEECCC----CHHHHHH
T ss_pred eEEEEEEeCCCCeEEEEEEEcCCCCEEEEEEEcCCCCCCHHHHHH
Confidence 9999999999999999999999999999999987 5699999996
|
| >3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.5e-22 Score=258.00 Aligned_cols=332 Identities=15% Similarity=0.098 Sum_probs=224.1
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCC
Q psy15216 1404 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK 1483 (2602)
Q Consensus 1404 ~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd 1483 (2602)
+.++.+.+++.+.+...+..++ ....++|+.+++++|.+ ++++++|+|+|++.++.++. +++||
T Consensus 13 ~~~~~v~~a~~~~~~~~~~~~~-----------~~~~~l~~~la~~~~~~--~~~~~~sGt~al~~al~~~~---~~~gd 76 (367)
T 3nyt_A 13 RIKDKIDAGIQRVLRHGQYILG-----------PEVTELEDRLADFVGAK--YCISCANGTDALQIVQMALG---VGPGD 76 (367)
T ss_dssp HHHHHHHHHHHHHHHHCCCSSC-----------HHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHTT---CCTTC
T ss_pred ccCHHHHHHHHHHHhcCCccCC-----------hHHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHhC---CCCcC
Confidence 3456778888887765322222 24678999999999975 89999999999999999983 38999
Q ss_pred EEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCC-CCcChhHHHhhccCCceEEEEeccccccccccChHHHHHHhhhcC
Q psy15216 1484 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN-GLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKG 1562 (2602)
Q Consensus 1484 ~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~-~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~~ia~~~g 1562 (2602)
+|+++.++|+++...+... |+++++++++++ +.+|+++++++++++|++|+ ++||||...|+++|.++|++||
T Consensus 77 ~Vi~~~~~~~~~~~~~~~~---G~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~---~~~~~G~~~~~~~i~~la~~~~ 150 (367)
T 3nyt_A 77 EVITPGFTYVATAETVALL---GAKPVYVDIDPRTYNLDPQLLEAAITPRTKAII---PVSLYGQCADFDAINAIASKYG 150 (367)
T ss_dssp EEEEESSSCTHHHHHHHHT---TCEEEEECBCTTTCSBCGGGTGGGCCTTEEEEC---CBCGGGCCCCHHHHHHHHHHTT
T ss_pred EEEECCCccHHHHHHHHHc---CCEEEEEecCCccCCcCHHHHHHhcCcCCcEEE---eeCCccChhhHHHHHHHHHHcC
Confidence 9999999999988777655 999999999875 78999999999999999888 6778999999999999999999
Q ss_pred CEEEEecccccCcccccCCCCCc--cEEEEcc--ccccCCCc-eEEEEEec-CCCCccccccccCCccccC---CCC-Cc
Q psy15216 1563 VIFHCDAAQAVGKIDINIQNYKV--DLMSFSA--HKIYGPKG-IGALYIRR-NPRTRIEAQIHGGGHEYGL---RSG-TL 1632 (2602)
Q Consensus 1563 i~vivD~a~~~g~~~~~l~~~~~--D~~v~S~--~K~~gp~G-~G~l~~~~-~~~~~l~~~~~g~~~~~~~---~~g-t~ 1632 (2602)
+++|+|++|+.|.. ++....+. |++++|| ||.+|+.| .|+++.++ ++.+.+.+....+.. ..+ ..| +.
T Consensus 151 ~~li~D~a~~~g~~-~~~~~~~~~~di~~~Sf~~~K~l~~~g~gg~~~~~~~~l~~~~~~~~~~g~~-~~~~~~~~g~~~ 228 (367)
T 3nyt_A 151 IPVIEDAAQSFGAS-YKGKRSCNLSTVACTSFFPSAPLGCYGDGGAIFTNDDELATAIRQIARHGQD-RRYHHIRVGVNS 228 (367)
T ss_dssp CCBEEECTTTTTCE-ETTEETTSSSSEEEEECCTTSSSCCSSCCEEEEESCHHHHHHHHHHTBTTEE-ETTEECSCCCBC
T ss_pred CEEEEECccccCCe-ECCeeccCCCCEEEEECCCCCcCCCcCceeEEEeCCHHHHHHHHHHHhcCCC-cCceeeccCcCC
Confidence 99999999998764 22222222 8999996 79887754 67777753 344444443322211 111 011 11
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecCCcHHHHHhc--CCEE
Q psy15216 1633 ATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDIA 1710 (2602)
Q Consensus 1633 ~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~ 1710 (2602)
....+.+. .++.. ...+++..++.+++++++.+.|.+ . ++.+...+....+....+.+...+.+.+...| +||.
T Consensus 229 ~~~~~~aa-~~~~~-l~~~~~~~~~~~~~~~~~~~~L~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~GI~ 304 (367)
T 3nyt_A 229 RLDTLQAA-ILLPK-LEIFEEEIALRQKVAAEYDLSLKQ-V-GIGTPFIEVNNISVYAQYTVRMDNRESVQASLKAAGVP 304 (367)
T ss_dssp CCCHHHHH-HHHHH-HHTHHHHHHHHHHHHHHHHHHHHH-T-TCCCCCCCTTEECCCSSEEEECSSHHHHHHHHHHHTCC
T ss_pred CccHHHHH-HHHHH-HHHHHHHHHHHHHHHHHHHHHhcc-C-CeeccCCCCCCceeeEEEEEEeCCHHHHHHHHHHCCCc
Confidence 11122111 22221 123566777888889999999987 3 44433222211111222333333566777766 6888
Q ss_pred EccccccCCCCCChhHH--HHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1711 VSSGSACTSASLEPSYV--LRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1711 v~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
++.+... +.+.++.+. ...++.......+.+|++++..+|.+|+++++++|++
T Consensus 305 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~~~~t~~~i~~v~~~~~~ 359 (367)
T 3nyt_A 305 TAVHYPI-PLNKQPAVADEKAKLPVGDKAATQVMSLPMHPYLDTASIKIICAALTN 359 (367)
T ss_dssp CBCSCSS-CGGGSGGGCCTTCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHC
T ss_pred eeccCCC-ccccChhhhccCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHH
Confidence 8765421 111122221 0111122223347899999999999999999999996
|
| >3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A | Back alignment and structure |
|---|
Probab=99.87 E-value=7.1e-21 Score=249.71 Aligned_cols=315 Identities=12% Similarity=0.136 Sum_probs=232.8
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCC
Q psy15216 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK 87 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd 87 (2602)
+.++.+.+++.+.+... ..... .+...+...+..+++++++++++|.+ ..++++++++|+..++.++. ++||
T Consensus 73 ~~~p~v~~a~~~~l~~~-~~~~~-~~~~~~g~~~~~~~l~~~la~~~g~~--~~i~~~sGt~a~~~~l~~~~----~~gd 144 (409)
T 3kki_A 73 ANHPLIKARLAKSLLEE-QQSLF-MSASFLQNDYDKPMIEKRLAKFTGFD--ECLLSQSGWNANVGLLQTIC----QPNT 144 (409)
T ss_dssp TTCHHHHHHHHHHHHSC-CCCCC-SBGGGGCSTTTSCHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHHC----CTTC
T ss_pred cCCHHHHHHHHHHHHHc-CCCCC-ccccccCCcHHHHHHHHHHHHHhCCC--eEEEecchHHHHHHHHHHhc----CCCC
Confidence 46789999999988752 21111 12222222345678999999999976 34556777899999999887 8999
Q ss_pred EEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccC-CceEEEEecccCcccccccHHHHHHHHHhcC
Q psy15216 88 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS-DTILVSVMLVNNEIGVIQPILEIGELCRSKG 166 (2602)
Q Consensus 88 ~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~-~tklv~i~~~~npTG~~~~l~~I~~la~~~g 166 (2602)
.|+++.+.|+++...+... |++++.++. .|+++|++++++ ++++|++++++||||.+.|+++|.++|++||
T Consensus 145 ~Vl~~~~~~~~~~~~~~~~---g~~~~~~~~-----~d~~~le~~l~~~~~~~vi~~~~~nptG~~~~l~~l~~la~~~~ 216 (409)
T 3kki_A 145 NVYIDFFAHMSLWEGARYA---NAQAHPFMH-----NNCDHLRMLIQRHGPGIIVVDSIYSTLGTIAPLAELVNISKEFG 216 (409)
T ss_dssp EEEEETTSCHHHHHHHHHT---TCEEEEECT-----TCHHHHHHHHHHHCSCEEEEESBCTTTCCBCCHHHHHHHHHHHT
T ss_pred EEEECCCcCHHHHHHHHHc---CCeEEEecC-----CCHHHHHHHHHhcCCeEEEECCCCCCCCCcCCHHHHHHHHHHcC
Confidence 9999999999988777665 889888764 589999999975 5899999999999999999999999999999
Q ss_pred CEEEEeccccccccc---------ccCCCCCccEEEeccccccCCCCcEEEEEecCCCCcccceecCCCccccccccCcc
Q psy15216 167 VIFHCDAAQAVGKID---------INIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLA 237 (2602)
Q Consensus 167 ~~livD~a~a~g~~~---------~dl~~~~~D~~~~S~~K~~Gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~ 237 (2602)
+++|+|++|+.+... .++. .++|+++.|+||.+|+.| |+++.++++++.+...... . ...++++
T Consensus 217 ~~li~De~~~~g~~g~~g~~~~~~~~~~-~~~di~~~s~sK~~~~~g-g~v~~~~~~~~~~~~~~~~----~-~~~~~~~ 289 (409)
T 3kki_A 217 CALLVDESHSLGTHGPNGAGLLAELGLT-REVHFMTASLAKTFAYRA-GAIWCNNEVNRCVPFISYP----A-IFSSTLL 289 (409)
T ss_dssp CEEEEECTTTTTTSSGGGCCHHHHHTCG-GGCSEEEEESSSTTCSSC-EEEEESSSGGGTHHHHCHH----H-HHSBCCC
T ss_pred CEEEEECCccccccCCCCCcchhhcCCC-CCCCEEEeecchhhCCCc-eEEEECHHHHHHHHHhCcC----c-cccCCCc
Confidence 999999999865431 1121 257899999999888775 9999998887766542211 0 1123456
Q ss_pred hhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEccc-ChhHHHHHh--CCeE
Q psy15216 238 THQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI-EGESLLMAI--KDIA 314 (2602)
Q Consensus 238 ~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~L--~gI~ 314 (2602)
...++++.++++..... ++.++++.++++++.+.|.+ . ++.+.+ ...+..+.++.. +..++...| +||.
T Consensus 290 ~~~~aa~~aal~~~~~~-~~~~~~~~~~~~~l~~~L~~-~-g~~~~~-----~~~~~~~~~~~~~~~~~~~~~L~~~Gv~ 361 (409)
T 3kki_A 290 PYEAAGLETTLEIIESA-DNRRQHLDRMARKLRIGLSQ-L-GLTIRS-----ESQIIGLETGDERNTEKVRDYLESNGVF 361 (409)
T ss_dssp HHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHT-T-TCCCCC-----SSSEEEEEEESHHHHHHHHHHHHHTTEE
T ss_pred HHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHH-c-CCccCC-----CCCEEEEEeCCHHHHHHHHHHHHHCCce
Confidence 66777777888865543 67888899999999999987 3 555441 123445555432 344566666 7999
Q ss_pred EcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 315 VSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 315 v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
+++...+..+ ...+++||+++.+++++|+++++++|++.
T Consensus 362 v~~~~~~~~~----------------~~~~~iRi~~~~~~t~e~i~~~~~~l~~~ 400 (409)
T 3kki_A 362 GSVFCRPATS----------------KNKNIIRLSLNSDVNDEQIAKIIEVCSDA 400 (409)
T ss_dssp CEEECTTSSC----------------TTCEEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred EeeeCCCCcC----------------CCCcEEEEEccCCCCHHHHHHHHHHHHHH
Confidence 8765432111 12478999999999999999999999974
|
| >2z7e_A ISCU protein, NIFU-like protein; iron-sulfur cluster, iron, biosynthesis, [2Fe-2S], asymmetric trimer, three conserved Cys; 2.30A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-22 Score=217.63 Aligned_cols=95 Identities=57% Similarity=0.940 Sum_probs=89.1
Q ss_pred hhhhhhhhhhhhhcCCCCcCcccCCCCcceeeeecCCCCccEEEEEEEEc-CCCcEEeeeeeccccchhHhhHHHHHHHH
Q psy15216 1767 FFMSYSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVN-KNGVITDAKFKTYGCGSAIASSSLVTEWV 1845 (2602)
Q Consensus 1767 ~~~~y~~~i~dh~~~p~~~g~~~~~~~~~~~~~~~~~~cgd~~~~~~~~~-~~~~i~~~~~~~~gc~~~~a~~s~~~~~~ 1845 (2602)
|.++|+++|+|||+||||+|.+++++ ++++++||+|||.|+|||+|+ ++|+|+|++|+++||+++||||||+||++
T Consensus 1 m~~lY~e~Ildh~~nPrn~G~l~~~d---~~~~~~np~CGD~i~l~lkvd~~~g~I~d~~F~~~GCais~ASaS~mte~v 77 (157)
T 2z7e_A 1 MSFEYNEKVLDHFLNPRNVGVLEDAN---GVGQCGNPACGAAMLFTIKVNPENDVIEDVRFKTFGCGSAIAVSSMLTEMV 77 (157)
T ss_dssp CTTHHHHHHHHHHHSCSSBSCCTTCS---EEEEEEETTTTEEEEEEEEECTTTCBEEEEEEEEESCTTHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHhCCCCCCCCCCCC---eEEEeCCCCCCCEEEEEEEEecCCCeEEEEEEEecCCHHHHHHHHHHHHHH
Confidence 45789999999999999999999887 899999999999999999996 67899999999999999999999999999
Q ss_pred cCCChhhhhcccccchhhh
Q psy15216 1846 KGKTLDEAMSIKNTDIAEE 1864 (2602)
Q Consensus 1846 ~g~~~~~~~~i~~~~i~~~ 1864 (2602)
+|||++||..++++.+.+.
T Consensus 78 ~Gkt~~EA~~i~~~~i~e~ 96 (157)
T 2z7e_A 78 KGKPIQYALNLTYKDIFEE 96 (157)
T ss_dssp TTSBHHHHHHCCHHHHHHH
T ss_pred cCCcHHHHHHHHhccHHHH
Confidence 9999999999998776654
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.2e-21 Score=256.17 Aligned_cols=321 Identities=16% Similarity=0.110 Sum_probs=223.7
Q ss_pred CCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHh----C--CCCCcEEEeCCHHHHHHHHHHhhhhhh
Q psy15216 1405 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI----Y--ADPREIIWTSGATESNNLAIKGAAHFY 1478 (2602)
Q Consensus 1405 ~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~----g--~~~~~iv~t~gaT~al~~al~~l~~~~ 1478 (2602)
.|..++++..+.+....+. ....|.... ...++|+.+++++ | +++++|++|+|+++|+..++.++.
T Consensus 107 ~p~~~~~~a~~~l~~~~~~-~~~~Y~~~~----G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~--- 178 (500)
T 3tcm_A 107 FSADSISRAKQILAMIPGR-ATGAYSHSQ----GIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLI--- 178 (500)
T ss_dssp SCHHHHHHHHHHHTTSTTS-CSSSCCCTT----CCHHHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHHC---
T ss_pred CCHHHHHHHHHHHHcCCCC-cCCCcCCCc----ChHHHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHHc---
Confidence 5667777777777653110 111122221 2345566666655 4 578899999999999999999885
Q ss_pred ccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCC--CCcChhHHHhhccC------CceEEEEeccccccccccC
Q psy15216 1479 KKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN--GLITLSQLEEKICS------DTILVSVMLVNNEIGVIQP 1550 (2602)
Q Consensus 1479 ~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~--~~id~d~l~~~i~~------~t~lv~l~~~~n~tG~~~~ 1550 (2602)
.++||+|+++.|.|+++...+..+ |++++.++++++ +.+|+++|++++++ ++++|++++|+||||.+++
T Consensus 179 ~~~gd~Vlv~~p~y~~~~~~~~~~---g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~~s 255 (500)
T 3tcm_A 179 RNEKDGILVPIPQYPLYSASIALH---GGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLA 255 (500)
T ss_dssp CSTTEEEEEEESCCTHHHHHHHHT---TCEEEEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCCCC
T ss_pred CCCCCEEEEeCCCcHhHHHHHHHc---CCEEEEEecccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCcccCC
Confidence 268999999999999988777665 999999988754 57999999999986 7899999999999999998
Q ss_pred ---hHHHHHHhhhcCCEEEEecccccCcc-----ccc-------CC--CCCc-cEEEEcccccc-CCCc--eEEEEE---
Q psy15216 1551 ---ILEIGELCRSKGVIFHCDAAQAVGKI-----DIN-------IQ--NYKV-DLMSFSAHKIY-GPKG--IGALYI--- 1606 (2602)
Q Consensus 1551 ---l~~I~~ia~~~gi~vivD~a~~~g~~-----~~~-------l~--~~~~-D~~v~S~~K~~-gp~G--~G~l~~--- 1606 (2602)
+++|+++|++||+++|+|++|+.... ..+ +. .... .+++.|+||.+ |++| +||+++
T Consensus 256 ~~~l~~i~~la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~ 335 (500)
T 3tcm_A 256 EENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGYFEITGF 335 (500)
T ss_dssp HHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCCEEEEEESC
T ss_pred HHHHHHHHHHHHHcCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccceEEEEEeCC
Confidence 56677779999999999999875322 111 10 1112 26667999965 7777 799998
Q ss_pred ecCCCCccccccccCCccccCCCCCcchhHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHhhcCCcE
Q psy15216 1607 RRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFR----------LARIEMKEELKRILFLQKRLYNGLMESIEEI 1676 (2602)
Q Consensus 1607 ~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~----------~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl 1676 (2602)
++++++.+.... ....+++.+.+.++..++. ......+.++++++++++++++.|.+ ++|+
T Consensus 336 ~~~~~~~l~~~~--------~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~-~~g~ 406 (500)
T 3tcm_A 336 SAPVREQIYKIA--------SVNLCSNITGQILASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNK-LEGI 406 (500)
T ss_dssp CTTHHHHHHHHH--------HTTCCCCHHHHHHHHHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-STTE
T ss_pred CHHHHHHHHHHH--------hcccCCCHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCc
Confidence 666555554322 1124567777777767764 13344677888899999999999988 6898
Q ss_pred EEeCCCCCCCCceEEEEEec----------CCcHH-HH-Hhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeE
Q psy15216 1677 YINGDMNNRIPHNLNISFNF----------IEGES-LL-MAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSI 1742 (2602)
Q Consensus 1677 ~i~~~~~~~~~~~~~~~~~~----------~~~~~-~~-~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i 1742 (2602)
.+..+.... ..+..+.++. ...+. +. ..| +||.+.+|..|... ...+++
T Consensus 407 ~~~~~~g~~-~~~~~~~lp~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~----------------~g~~~i 469 (500)
T 3tcm_A 407 TCNEAEGAM-YVFPQICLPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQV----------------PGTWHF 469 (500)
T ss_dssp ECCCCCBTT-EECCEECCCHHHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCCC----------------TTCCBE
T ss_pred EEecCCeEE-EEeeeecCchhhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCC----------------CCCCEE
Confidence 887443221 1011111111 01111 22 333 69999999988642 113689
Q ss_pred EEecCCCCCHHHHHHHHHHHHH
Q psy15216 1743 RFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1743 Rls~~~~~t~edid~li~~L~~ 1764 (2602)
|++++ ++.+++++++++|++
T Consensus 470 Ris~~--~~~e~i~~~i~~l~~ 489 (500)
T 3tcm_A 470 RCTIL--PQEDKIPAVISRFTV 489 (500)
T ss_dssp EEESC--SCTTTHHHHHHHHHH
T ss_pred EEEEC--CCHHHHHHHHHHHHH
Confidence 99999 788999999999997
|
| >3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.1e-22 Score=256.86 Aligned_cols=338 Identities=15% Similarity=0.109 Sum_probs=225.0
Q ss_pred ccCCCCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHH-HHHhCCCCCcEEEeCCHHHHHHHHHHhhhh
Q psy15216 1398 FKDATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEV-AQLIYADPREIIWTSGATESNNLAIKGAAH 1476 (2602)
Q Consensus 1398 L~~~~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~i-a~~~g~~~~~iv~t~gaT~al~~al~~l~~ 1476 (2602)
+...+.+.++.+++++.+.++..+..+. + ....++++++ ++++| ..+++++++|+|+|+++++.++.
T Consensus 7 ~~~p~~~~~~~i~~a~~~~~~~~~~~~~------~----~~~~~l~~~~~a~~~g-~~~~~v~~~sgt~al~~al~~l~- 74 (377)
T 3ju7_A 7 FLRASTVPVIEYLDELKEIDASHIYTNY------G----PINQRFEQTIMSGFFQ-NRGAVTTVANATLGLMAAIQLKK- 74 (377)
T ss_dssp SCCCCCCCGGGGHHHHHHHHHHTCCSSS------C----HHHHHHHHHHHHHTST-TCSEEEEESCHHHHHHHHHHHHS-
T ss_pred ccCCCCCCcHHHHHHHHHHHHcCCcccC------C----HHHHHHHHHHHHHHhC-CCCeEEEeCCHHHHHHHHHHHcC-
Confidence 3344557778889999998876432221 1 2367899999 99999 34579999999999999999873
Q ss_pred hhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCC-CCCcChhHHHhhc-cCC--ceEEEEeccccccccccChH
Q psy15216 1477 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NGLITLSQLEEKI-CSD--TILVSVMLVNNEIGVIQPIL 1552 (2602)
Q Consensus 1477 ~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~-~~~id~d~l~~~i-~~~--t~lv~l~~~~n~tG~~~~l~ 1552 (2602)
+++||+|+++.++|+++..++..+ |++++++++++ ++.+|++++++++ +++ |++|+ ++|++|.+.|++
T Consensus 75 --~~~Gd~Vi~~~~~~~~~~~~~~~~---G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~---~~~~~G~~~~~~ 146 (377)
T 3ju7_A 75 --RKKGKYALMPSFTFPATPLAAIWC---GLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVV---PYATFGSWMNLE 146 (377)
T ss_dssp --CTTCCEEEEESSSCTHHHHHHHHT---TCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEEC---CBCGGGBCCCCH
T ss_pred --CCCcCEEEECCCCcHHHHHHHHHc---CCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEE---EECCCCCccCHH
Confidence 389999999999999988776655 99999999984 6789999999998 677 89887 456799999999
Q ss_pred HHHHHhhhcCCEEEEecccccCcccccCCCC---CccEEEEc--cccccCCCceEEEEEec-CCCCccccccccCCc---
Q psy15216 1553 EIGELCRSKGVIFHCDAAQAVGKIDINIQNY---KVDLMSFS--AHKIYGPKGIGALYIRR-NPRTRIEAQIHGGGH--- 1623 (2602)
Q Consensus 1553 ~I~~ia~~~gi~vivD~a~~~g~~~~~l~~~---~~D~~v~S--~~K~~gp~G~G~l~~~~-~~~~~l~~~~~g~~~--- 1623 (2602)
+|.++|+ ||+++|+|++|+.|... +.... ..|+.++| .||.+++...|+++.++ ++.++++.+...+..
T Consensus 147 ~i~~la~-~~~~vi~D~a~a~g~~~-~~~~~g~~~~d~~~~S~~~~K~l~~g~gG~~~~~~~~l~~~~~~~~~~g~~~~~ 224 (377)
T 3ju7_A 147 EYEELEK-KGVPVVVDAAPGFGLMN-GGMHYGQDFSGMIIYSFHATKPFGIGEGGLIYSKNEEDIQRIKRMGNFGFDTNR 224 (377)
T ss_dssp HHHHHHH-TTCCBEEECTTCTTCEE-TTEETTTTCSSEEEEECBTTSSSCCBSCEEEEESCHHHHHHHHHHTBTTBCTTS
T ss_pred HHHHHHh-cCCEEEEECCCccCCeE-CCEeccCCCCcEEEEECCCCCcCCCCCcEEEEECCHHHHHHHHHHHhcCCCCCC
Confidence 9999999 99999999999988642 22122 14565555 56877653357777664 334444443332211
Q ss_pred ---cccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEE--EeCCCC-CCCCceEEEEEecC
Q psy15216 1624 ---EYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIY--INGDMN-NRIPHNLNISFNFI 1697 (2602)
Q Consensus 1624 ---~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~--i~~~~~-~~~~~~~~~~~~~~ 1697 (2602)
..++..+..++.+..++ ..+ ..++...++.+++++++.+.|.+ .+++. +..... ...+....+.++..
T Consensus 225 ~~~~~g~~~~~~~~~aa~~~-~~l----~~l~~~~~~~~~~~~~~~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (377)
T 3ju7_A 225 ECTMMGFNCKMSEYAAAIGI-ATM----KKWDDKLKERTRISEWYKQLLQS-NGLMKKGWQLQKTEAVIQQFMPILCPEE 298 (377)
T ss_dssp CBCSSCCBCCCCHHHHHHHH-HHH----HTHHHHHHHHHHHHHHHHHHHHH-TTTTTTTCBCCCCSCBCCSSEEEECCTT
T ss_pred ceeeccccCCCCHHHHHHHH-HHH----HHHHHHHHHHHHHHHHHHHHhcC-CCCccccccCCCCCcceEEEEEEEeCCh
Confidence 11222222222222221 112 34677788888899999999987 55431 111111 11222333444432
Q ss_pred -CcHHHHHhc--CCEEEccccccCCCCCChhHH---HHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1698 -EGESLLMAI--KDIAVSSGSACTSASLEPSYV---LRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1698 -~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~---~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
+.+++...| +||.++.+... +.+.++.+. ...++.++....+.|||+++..+|.+|+++++++|++
T Consensus 299 ~~~~~l~~~L~~~gI~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp~~~~~t~~di~~v~~~l~~ 370 (377)
T 3ju7_A 299 VRNKQVIEDLKKQKIEARLYFSP-SCHQQVLFRNYKSTDLTRTNKIAKRIVSLPLWEGMTKEIVEQIVICLGQ 370 (377)
T ss_dssp SCHHHHHHHHHTTTBCCBCTTSS-CGGGSGGGTTSCBSCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHTC
T ss_pred hhHHHHHHHHHHCCCceecccCC-ccccchhhhcCCCCCCHHHHHHHhCEEECCCCCCCCHHHHHHHHHHHHH
Confidence 367777777 79988765411 111122211 1112223334457899999999999999999999986
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.6e-21 Score=246.92 Aligned_cols=300 Identities=15% Similarity=0.105 Sum_probs=222.8
Q ss_pred CCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccC
Q psy15216 1402 TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKR 1481 (2602)
Q Consensus 1402 ~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~ 1481 (2602)
..+.++.+.+++.+.+.....+|... ..++|+++++++++++++|++|+|+|+|+++++.++.
T Consensus 26 ~~~~~~~v~~a~~~~~~~~~~y~~~~-----------~~~lr~~la~~~~~~~~~i~~t~g~~~al~~~~~~l~------ 88 (350)
T 3fkd_A 26 TDGDKDHLEKHLVENLNCIRHYPEPD-----------AGTLRQMLAKRNSVDNNAILVTNGPTAAFYQIAQAFR------ 88 (350)
T ss_dssp CCSCCHHHHHHHHHTGGGGGSCCCTT-----------CHHHHHHHHHHTTCCGGGEEEESHHHHHHHHHHHHTT------
T ss_pred CCCCCHHHHHHHHHhHhHHhcCCCCc-----------HHHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHHHHC------
Confidence 34678899999998886555666541 1478999999999988999999999999999988863
Q ss_pred CCEEEEcCCCCcchHHHHHHHHhCCcEEEEecc-CCCCCcChhHHHhhccCCceEEEEeccccccccccChHHHHHHhhh
Q psy15216 1482 GKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP-KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRS 1560 (2602)
Q Consensus 1482 gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~-~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~~ia~~ 1560 (2602)
||+|+++.|+|+++...+... |++++.++. ++...+++ +++++|++++|+||||.++|+++|.++++.
T Consensus 89 gd~Vi~~~p~~~~~~~~~~~~---g~~~~~v~~~~~~~~~~~--------~~~~~v~i~~p~nptG~~~~~~~l~~l~~~ 157 (350)
T 3fkd_A 89 GSRSLIAIPSFAEYEDACRMY---EHEVCFYPSNEDIGEADF--------SNMDFCWLCNPNNPDGRLLQRTEILRLLND 157 (350)
T ss_dssp TCEEEEEESCCHHHHHHHHHT---TCEEEEEETTSCGGGSCC--------TTCSEEEEESSCTTTCCCCCHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHc---CCeEEEEecCCccccCcc--------CCCCEEEEeCCCCCcCCCCCHHHHHHHHHh
Confidence 899999999999987666554 999999998 65444444 689999999999999999999999999987
Q ss_pred cC-CEEEEecccccCccc-----ccCCCCCccEEEEccccccCCCc--eEEEEEecCCCCccccccccCCccccCCCCCc
Q psy15216 1561 KG-VIFHCDAAQAVGKID-----INIQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTL 1632 (2602)
Q Consensus 1561 ~g-i~vivD~a~~~g~~~-----~~l~~~~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~ 1632 (2602)
++ .++|+|++|+..... ..+...+.++++.|+||.+|++| +||+++++++++.+.... ..+++
T Consensus 158 ~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~~~~~---------~~~~~ 228 (350)
T 3fkd_A 158 HPDTTFVLDQSYVSFTTEEVIRPADIKGRKNLVMVYSFSHAYGIPGLRIGYIVANKDFMKRVAAFS---------TPWAV 228 (350)
T ss_dssp CTTSEEEEECTTTTSCSSCCCCGGGGTTCSSEEEEEESHHHHSCGGGCCEEEECCHHHHHHHHTTC---------CTTCS
T ss_pred CCCCEEEEECchhhhccCcchhhHHhhcCCCEEEEecCchhccCcchheEeEEeCHHHHHHHHHhC---------CCCCC
Confidence 75 799999998643211 12233455688999999888666 899999876665554332 13456
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecCCcHHHHHhc---CCE
Q psy15216 1633 ATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI---KDI 1709 (2602)
Q Consensus 1633 ~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~L---~gI 1709 (2602)
+...+.++..+|+......+...+ ..++++++.+.|.+ .+++.+..+. .....+.++..+..++...| +||
T Consensus 229 ~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~l~~~L~~-~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~L~~~~gi 302 (350)
T 3fkd_A 229 NALAIEAAKFILIHPAQFTLPIRK-WQRNTVDFITALNR-LDGVEVHPSG----TTFFLLRLKKGTAAELKKYMLEEYNM 302 (350)
T ss_dssp CHHHHHHHHHHHHCTTTTCCCHHH-HHHHHHHHHHHHHH-STTEEECCCS----SSEEEEEESSSCHHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHHhCHHHHHHHHHH-HHHHHHHHHHHHhc-CCCcEECCCC----CcEEEEECCCCCHHHHHHHHHHHCCE
Confidence 666666666666632212233333 33888899999987 6888875322 23334555544566676665 699
Q ss_pred EEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1710 AVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1710 ~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
.+++|..|... ..+++|||++ +.+++++++++|++
T Consensus 303 ~v~~g~~f~~~-----------------~~~~iRis~~---~~~~~~~l~~al~~ 337 (350)
T 3fkd_A 303 LIRDASNFRGL-----------------DESYVRITTQ---RPAQNQLFIKALET 337 (350)
T ss_dssp ECEECTTSTTC-----------------CTTEEEEECC---CHHHHHHHHHHHHH
T ss_pred EEEeCccCCCC-----------------CCCEEEEEcC---CHHHHHHHHHHHHH
Confidence 99999887532 1389999987 88999999999997
|
| >1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.87 E-value=7.2e-22 Score=256.27 Aligned_cols=299 Identities=14% Similarity=0.131 Sum_probs=211.6
Q ss_pred HHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHH-HHHhCCcEEEEecc
Q psy15216 1436 EKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIR-KLENDGFRVTYLKP 1514 (2602)
Q Consensus 1436 ~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~-~~~~~G~~v~~v~~ 1514 (2602)
.....++|+++++++|.+ +.++++|+|+|++.++. +. ++||+|+++.++|++....+. .++..|+++++++.
T Consensus 54 ~~~~~~lr~~la~~~g~~--~~i~~~sGt~a~~~al~-~~----~~gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~ 126 (393)
T 1n8p_A 54 NPNRENLERAVAALENAQ--YGLAFSSGSATTATILQ-SL----PQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTND 126 (393)
T ss_dssp CHHHHHHHHHHHHHTTCS--EEEEESCHHHHHHHHHH-TS----CSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEEESS
T ss_pred ChhHHHHHHHHHHHhCCC--cEEEECChHHHHHHHHH-Hc----CCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEeCC
Confidence 346789999999999976 56666667999999999 65 799999999999998766554 34556999999986
Q ss_pred CCCCCcChhHHHhhccCCceEEEEeccccccccccChHHHHHHhhhc----CCEEEEecccccCcccccCCCCCccEEEE
Q psy15216 1515 KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSK----GVIFHCDAAQAVGKIDINIQNYKVDLMSF 1590 (2602)
Q Consensus 1515 ~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~~ia~~~----gi~vivD~a~~~g~~~~~l~~~~~D~~v~ 1590 (2602)
+ | ++|+++++++|++|++++|+||||.++|+++|.++|++| |+++|+|++|+.+... +...+++|++++
T Consensus 127 ~-----d-~~l~~~i~~~t~lv~~~~~~nptG~~~~l~~i~~la~~~~~~~~~~livD~a~~~~~~~-~~~~~~~di~~~ 199 (393)
T 1n8p_A 127 L-----L-NDLPQLIKENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPYIS-NPLNFGADIVVH 199 (393)
T ss_dssp H-----H-HHHHHHSCSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEECTTTHHHHC-CGGGGTCSEEEE
T ss_pred C-----h-HHHHHhcccCceEEEEECCCCCcceecCHHHHHHHHHHhCCCCCCEEEEeCCccccccC-CHHHcCCeEEEE
Confidence 5 7 899999999999999999999999999999999999999 9999999999877643 444567999999
Q ss_pred ccccccCCCc--e-EEEEEe-cCCCCccccccccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15216 1591 SAHKIYGPKG--I-GALYIR-RNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLY 1666 (2602)
Q Consensus 1591 S~~K~~gp~G--~-G~l~~~-~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~ 1666 (2602)
|+||++|++| + |+++++ +++++.+.+.... ..++.+....+++..+++. +....++..+.++++.
T Consensus 200 S~sK~~g~~G~rigG~~~~~~~~~~~~l~~~~~~-------~g~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~l~ 268 (393)
T 1n8p_A 200 SATKYINGHSDVVLGVLATNNKPLYERLQFLQNA-------IGAIPSPFDAWLTHRGLKT----LHLRVRQAALSANKIA 268 (393)
T ss_dssp ETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHH-------HCCCCCHHHHHHHHHHHTT----HHHHHHHHHHHHHHHH
T ss_pred ECcccccCCCCceeEEEEeCCHHHHHHHHHHHHh-------cCCCCCHHHHHHHHhccch----HHHHHHHHHHHHHHHH
Confidence 9999999888 6 999885 4555555432110 1122333333333334432 3344455566677777
Q ss_pred HHHhhcCCc-EE-EeCCC--C-----------CC-C-CceEEEEEecC--CcHHHHHhc--CCEEEccccccCCCCC--C
Q psy15216 1667 NGLMESIEE-IY-INGDM--N-----------NR-I-PHNLNISFNFI--EGESLLMAI--KDIAVSSGSACTSASL--E 1723 (2602)
Q Consensus 1667 ~~L~~~~~g-l~-i~~~~--~-----------~~-~-~~~~~~~~~~~--~~~~~~~~L--~gI~v~~g~~~~~~~~--~ 1723 (2602)
+.|.+ .+. +. +..+. . .. . +.+..|.+++. +...++..| .++.++.|+.|..... .
T Consensus 269 ~~L~~-~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~l~~l~~~~~~~s~G~~~s~~~~p~~ 347 (393)
T 1n8p_A 269 EFLAA-DKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGGAEAASKFASSTRLFTLAESLGGIESLLEVPAV 347 (393)
T ss_dssp HHHTS-CTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSCHHHHHHHHHHCSSSEECSCCCCSSCEEECTTT
T ss_pred HHHHh-CCCCceEEECCCCCCCccHHHHHhhCCCCCCccEEEEEeCCcHHHHHHHHhhCCcceECCCCCCCcceeecccc
Confidence 77766 444 43 21111 0 01 2 55666666642 344566665 4677777765542100 1
Q ss_pred hhH------HHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1724 PSY------VLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1724 ~~~------~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
+++ .+..+|.+ .+.||+|++.++++++++.+.++|++
T Consensus 348 ~~h~~~~~~~~~~~g~~----~~~iRlS~g~~~~~~~i~~l~~al~~ 390 (393)
T 1n8p_A 348 MTHGGIPKEAREASGVF----DDLVRISVGIEDTDDLLEDIKQALKQ 390 (393)
T ss_dssp TTSCSSCTTTTTTTSCC----TTEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred ccccccCHHHHHhcCCC----CCeEEEEEccCCHHHHHHHHHHHHHH
Confidence 111 23445554 38999999999999999999999986
|
| >3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-21 Score=255.06 Aligned_cols=332 Identities=15% Similarity=0.108 Sum_probs=226.5
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCC
Q psy15216 1404 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK 1483 (2602)
Q Consensus 1404 ~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd 1483 (2602)
..++.+.+++.+.+...+.. .. .....++|+.++++++.+ ++++++|+|+|++.++.++. +++||
T Consensus 33 ~~~~~~~~a~~~~~~~~~~~-~~---------~~~~~~l~~~la~~~~~~--~~i~~~~gt~al~~~l~~~~---~~~gd 97 (391)
T 3dr4_A 33 RLDGNERDYVLECMDTTWIS-SV---------GRFIVEFEKAFADYCGVK--HAIACNNGTTALHLALVAMG---IGPGD 97 (391)
T ss_dssp CCCSSHHHHHHHHHHHTCCS-SC---------SHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHT---CCTTC
T ss_pred CCCHHHHHHHHHHHHcCCcc-CC---------ChHHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHcC---CCCcC
Confidence 45577888888888653221 00 134788999999999976 88999999999999999983 38999
Q ss_pred EEEEcCCCCcchHHHHHHHHhCCcEEEEeccC-CCCCcChhHHHhhccCCceEEEEeccccccccccChHHHHHHhhhcC
Q psy15216 1484 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPK-NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKG 1562 (2602)
Q Consensus 1484 ~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~-~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~~ia~~~g 1562 (2602)
+|+++.++|+++...+... |++++.++.+ .++.+|+++|++++++++++|++ +||||.+.|+++|.++|++||
T Consensus 98 ~vl~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~~---~n~tG~~~~~~~i~~l~~~~~ 171 (391)
T 3dr4_A 98 EVIVPSLTYIASANSVTYC---GATPVLVDNDPRTFNLDAAKLEALITPRTKAIMP---VHLYGQICDMDPILEVARRHN 171 (391)
T ss_dssp EEEEESSSCTHHHHHHHHT---TCEEEEECBCTTTCSBCGGGSGGGCCTTEEEECC---BCGGGCCCCHHHHHHHHHHTT
T ss_pred EEEECCCchHHHHHHHHHC---CCEEEEEecCccccCcCHHHHHHhcCCCceEEEE---ECCCCChhhHHHHHHHHHHcC
Confidence 9999999999998777655 9999999998 46789999999999999998884 578999999999999999999
Q ss_pred CEEEEecccccCcccccC--CCCCccEEEEc--cccccCCCceEEEEEecC-CCCccccccccCCcc-ccC---CCC-Cc
Q psy15216 1563 VIFHCDAAQAVGKIDINI--QNYKVDLMSFS--AHKIYGPKGIGALYIRRN-PRTRIEAQIHGGGHE-YGL---RSG-TL 1632 (2602)
Q Consensus 1563 i~vivD~a~~~g~~~~~l--~~~~~D~~v~S--~~K~~gp~G~G~l~~~~~-~~~~l~~~~~g~~~~-~~~---~~g-t~ 1632 (2602)
+++|+|++|+.|....+. ..+ .|+.++| .||.+++...|+++.+++ +.+.+.+...++... ..+ ..| ..
T Consensus 172 ~~li~D~a~~~g~~~~~~~~~~~-~di~~~S~s~~K~l~~g~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~ 250 (391)
T 3dr4_A 172 LLVIEDAAEAVGATYRGKKSGSL-GDCATFSFFGNAIITTGEGGMITTNDDDLAAKMRLLRGQGMDPNRRYWFPIVGFNY 250 (391)
T ss_dssp CEEEEECTTCTTCEETTEETTSS-SSEEEEECBTTSSSCCBSCEEEEESCHHHHHHHHHHHBTTCCTTSTTCCSSCCCBC
T ss_pred CEEEEECcccccceECCeeeccc-CCEEEEECCCCCcCCcCCeEEEEECCHHHHHHHHHHHhcCCCCCCccccccccccc
Confidence 999999999987654332 222 3666666 558665433578777654 434444333222210 000 011 11
Q ss_pred chhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCC--CCC--CCCceEEEEEec---CCcHHHHH
Q psy15216 1633 ATHQIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIEEIYINGD--MNN--RIPHNLNISFNF---IEGESLLM 1704 (2602)
Q Consensus 1633 ~~~~~~al~~aL~~~-~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~--~~~--~~~~~~~~~~~~---~~~~~~~~ 1704 (2602)
... .+.+++.+. ...+++..++.+++++++.+.|.+ . ++.+..+ +.. ..+....+.++. .+..++..
T Consensus 251 ~~~---~l~aa~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 325 (391)
T 3dr4_A 251 RMT---NIQAAIGLAQLERVDEHLAARERVVGWYEQKLAR-L-GNRVTKPHVALTGRHVFWMYTVRLGEGLSTTRDQVIK 325 (391)
T ss_dssp BCC---HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHGG-G-TTSEECCCCCTTSCCCCSSEEEEECSSCSSCHHHHHH
T ss_pred CCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-C-CccccCcCCCCCCcceeEEEEEEECCccchhHHHHHH
Confidence 222 222333322 245678888899999999999988 4 6666544 222 222334444542 34667777
Q ss_pred hc--CCEEEccccccCCCCCChhHHH---HHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1705 AI--KDIAVSSGSACTSASLEPSYVL---RALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1705 ~L--~gI~v~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
.| +||.++++..... ..+.+.. ..++.......+.+|++++.++|.+||++++++|++
T Consensus 326 ~L~~~GI~v~~~~~p~~--~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~ 388 (391)
T 3dr4_A 326 DLDALGIESRPVFHPMH--IMPPYAHLATDDLKIAEACGVDGLNLPTHAGLTEADIDRVIAALDQ 388 (391)
T ss_dssp HHHHTTCCCEECCCCGG--GSGGGGGGCCTTCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHT
T ss_pred HHHHCCCceeecCCccc--cChhhhhcCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHH
Confidence 76 7999987752111 0111110 001111122346899999999999999999999986
|
| >1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.9e-21 Score=250.52 Aligned_cols=304 Identities=14% Similarity=0.120 Sum_probs=206.3
Q ss_pred chhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHHH-HHhCCcE
Q psy15216 34 IYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDGFR 112 (2602)
Q Consensus 34 ~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~-~~~~G~~ 112 (2602)
.++....+..+++++++++++|.+ ++++++|+++|+++++.++. ++||+|+++.+.|+++...+.. ++..|++
T Consensus 55 ~Y~~~~~~~~~~l~~~ia~~~g~~--~~i~~~~g~~ai~~~~~~l~----~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~ 128 (404)
T 1e5e_A 55 IYTRLGNPTVSNLEGKIAFLEKTE--ACVATSSGMGAIAATVLTIL----KAGDHLISDECLYGCTHALFEHALTKFGIQ 128 (404)
T ss_dssp CBTTTCCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHC----CTTCEEEEESCCCHHHHHHHHTHHHHTTCE
T ss_pred cccCCcChHHHHHHHHHHHHhCCC--cEEEeCChHHHHHHHHHHHh----CCCCEEEEeCCCchhHHHHHHHHHHHcCCE
Confidence 333333456789999999999985 67778888899999999887 7999999999999998886653 4667999
Q ss_pred EEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHh-cCCEEEEecccccccccccCCCCCccE
Q psy15216 113 VTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRS-KGVIFHCDAAQAVGKIDINIQNYKVDL 191 (2602)
Q Consensus 113 v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~-~g~~livD~a~a~g~~~~dl~~~~~D~ 191 (2602)
++.++.+ |+++|+++++++|++|++++|+||||.++|+++|+++|++ +|+++|+|++|+.+.....+ .+++|+
T Consensus 129 ~~~v~~~-----d~~~l~~~i~~~t~~v~l~~p~NptG~v~~l~~i~~la~~~~~~~li~De~~~~~~~~~~~-~~~~di 202 (404)
T 1e5e_A 129 VDFINTA-----IPGEVKKHMKPNTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFCSPMITNPV-DFGVDV 202 (404)
T ss_dssp EEEECTT-----STTHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHTSTTCEEEEECTTTCTTTCCGG-GGTCSE
T ss_pred EEEECCC-----CHHHHHHhcCCCCcEEEEECCCCCCCcccCHHHHHHHHHhhcCCEEEEECCCchhhhCCcc-ccCCEE
Confidence 9999865 8899999999999999999999999999999999999999 99999999999977632222 357899
Q ss_pred EEeccccccCCCC---cEEEEEecCCCC-cccceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy15216 192 MSFSAHKIYGPKG---IGALYIRRNPRT-RIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQK 267 (2602)
Q Consensus 192 ~~~S~~K~~Gp~G---~G~l~~~~~~~~-~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~ 267 (2602)
++.|+||++|.+| +|+++++++.++ .+.+...++ ..++.+....+++.++++. .....++...+++
T Consensus 203 ~~~S~sK~~~~~g~ri~G~~~~~~~~~~~~l~~~~~~~------~g~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~ 272 (404)
T 1e5e_A 203 VVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDI------TGSVISPHDAWLITRGLST----LNIRMKAESENAM 272 (404)
T ss_dssp EEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCC------CCCCCCHHHHHHHHHHHTT----HHHHHHHHHHHHH
T ss_pred EEEcCccccCCCCCCeEEEEEECHHHHHHHHHHHHHhC------CCCCCCHHHHHHHHHhHhH----HHHHHHHHHHHHH
Confidence 9999999777555 499999987766 665543221 0123454555555555542 2334444455666
Q ss_pred HHHHHHhhccCceE-EeCC-------------CCCCCCceEEEEEcccChhHHHHHh--CCeEEcc---c------ccCC
Q psy15216 268 RLYNGLMESIEEIY-INGD-------------MNNRIPHNLNISFNFIEGESLLMAI--KDIAVSS---G------SACT 322 (2602)
Q Consensus 268 ~l~~~L~~~~~g~~-l~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~v~~---g------~~~~ 322 (2602)
.+.+.+.+ .+.+. +.-+ .......++.+.++.. .......+ .+|.+.. | .+|.
T Consensus 273 ~l~~~l~~-~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~l~~~~i~~~~~s~G~~~sl~~~~~ 350 (404)
T 1e5e_A 273 KVAEYLKS-HPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKSG-FEGAKKLLDNLKLITLAVSLGGCESLIQHPA 350 (404)
T ss_dssp HHHHHHHT-CTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETTH-HHHHHHHHHTCSSSEESSCCCSSSCEEECGG
T ss_pred HHHHHHHh-CCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEeCCC-HHHHHHHHHhCCCceeccCCCCcceeeeccc
Confidence 66666655 33332 1111 0001133344444321 12222222 4663332 1 2232
Q ss_pred CCC--CChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 323 SAS--LEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 323 ~~~--~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
... ..+...+...|++ +++||||++. ++++++++.|++.
T Consensus 351 ~~~~~~~~~~~~~~~g~~----~~~iRis~g~----e~~~~li~~l~~a 391 (404)
T 1e5e_A 351 SMTHAVVPKEEREAAGIT----DGMIRLSVGI----EDADELIADFKQG 391 (404)
T ss_dssp GTTTTTSCHHHHHHTTCC----TTEEEEECCS----SCHHHHHHHHHHH
T ss_pred ccccccCCHHHHHhcCCC----CCeEEEEeCC----CCHHHHHHHHHHH
Confidence 211 1122333445553 3899999995 7899999998864
|
| >2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ... | Back alignment and structure |
|---|
Probab=99.87 E-value=1e-21 Score=257.72 Aligned_cols=331 Identities=17% Similarity=0.158 Sum_probs=235.4
Q ss_pred CCCCHHHHHHHHHHHhhcc--CCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhcc
Q psy15216 1403 TPIDPRVVDKMIPYLRVQF--GNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKK 1480 (2602)
Q Consensus 1403 ~~~~~~v~eal~~~l~~~~--~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~ 1480 (2602)
.+.++.+.+++.+.+...+ ++|++..+........+.+.+|+++++++|++++ .++++++|+|+..++.++. +
T Consensus 33 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~g~~~~-~i~~~sGt~a~~~a~~~~~----~ 107 (405)
T 2vi8_A 33 NFVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAEHA-NVQPHSGAQANMAVYFTVL----E 107 (405)
T ss_dssp CCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEE-ECCCSSHHHHHHHHHHHHC----C
T ss_pred ccCCHHHHHHHHHHhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCCce-EEEecCcHHHHHHHHHHhc----C
Confidence 3458899999998885332 3444322222233445566688999999998744 3444555999999999986 7
Q ss_pred CCCEEEEcCCCCcchHHHH---HHHHhCCcEEEEeccC-CCCCcChhHHHhhccC-CceEEEEeccccccccccChHHHH
Q psy15216 1481 RGKHIITVQTEHKSVLDSI---RKLENDGFRVTYLKPK-NNGLITLSQLEEKICS-DTILVSVMLVNNEIGVIQPILEIG 1555 (2602)
Q Consensus 1481 ~gd~Vlv~~~~~~s~~~~~---~~~~~~G~~v~~v~~~-~~~~id~d~l~~~i~~-~t~lv~l~~~~n~tG~~~~l~~I~ 1555 (2602)
+||+|+++++.|+++...+ ... ..+.+++.++.+ .++.+|+++|++++++ +|++|+++ ++| +|...|+++|.
T Consensus 108 ~gd~Vl~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~-~~~-~~~~~~l~~i~ 184 (405)
T 2vi8_A 108 HGDTVLGMNLSHGGHLTHGSPVNFS-GVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAA-AAA-YPRIIDFAKFR 184 (405)
T ss_dssp TTCEEEEECGGGTCCTTTTCTTSHH-HHHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEEEC-CSS-CCSCCCHHHHH
T ss_pred CCCEEEEecccccchhcccchhhhc-cceeEEEecccccccCCcCHHHHHHHHHhcCCeEEEEe-CCC-CCccCCHHHHH
Confidence 9999999999999875321 122 113478888775 4677999999999986 88888874 334 46777899999
Q ss_pred HHhhhcCCEEEEecccccCcccccCCCC---CccEEEEccccccC-CCceEEEEEecCCCCccccccccCCccccCCCCC
Q psy15216 1556 ELCRSKGVIFHCDAAQAVGKIDINIQNY---KVDLMSFSAHKIYG-PKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGT 1631 (2602)
Q Consensus 1556 ~ia~~~gi~vivD~a~~~g~~~~~l~~~---~~D~~v~S~~K~~g-p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt 1631 (2602)
++|++||+++|+|++|+.|..+.+.... .+|++++|+||+++ |.| |++++++++.+.+.+... .+..++
T Consensus 185 ~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~~~g~~g-G~~~~~~~~~~~l~~~~~------~~~~~~ 257 (405)
T 2vi8_A 185 EIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRG-GMILCQEQFAKQIDKAIF------PGIQGG 257 (405)
T ss_dssp HHHHHHTCEEEEECTTTHHHHHTTSSCCSTTTCSEEEEESSSTTCCCSC-EEEEECHHHHHHHHHHHT------TTTCSS
T ss_pred HHHHHcCCEEEEEccccccccccCcCCCccccCCEEEEeccccCCCCCC-eEEEEcHHHHHHHHhhhc------ccccCC
Confidence 9999999999999999876443332222 57899999999664 888 999999776665554321 123466
Q ss_pred cchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEec--CCcHHHHHhc--
Q psy15216 1632 LATHQIVGMGEAFRLAR-IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF--IEGESLLMAI-- 1706 (2602)
Q Consensus 1632 ~~~~~~~al~~aL~~~~-~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~L-- 1706 (2602)
+++.++.++.++++... .++++..+++.++++++.+.|.+ . ++.+..+.. ......+.++. .+...+...|
T Consensus 258 ~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~ 333 (405)
T 2vi8_A 258 PLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQN-E-GFTLVSGGT--DNHLLLVDLRPQQLTGKTAEKVLDE 333 (405)
T ss_dssp CCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-T-TCEEGGGSC--SSSEEEEECGGGTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-C-CCeEecCCC--CceEEEEEccCCCCCHHHHHHHHHH
Confidence 77888888888888654 57788999999999999999988 4 787765422 13444455542 2455666555
Q ss_pred CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCC----CCCHHHHHHHHHHHHHh
Q psy15216 1707 KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGR----FTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1707 ~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~----~~t~edid~li~~L~~~ 1765 (2602)
+||.+++|..+... .+ ....+++|++++. ..+.+|+++++++|++.
T Consensus 334 ~gi~v~~g~~~~~~----------~~---~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~ 383 (405)
T 2vi8_A 334 VGITVNKNTIPYDP----------ES---PFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLV 383 (405)
T ss_dssp HTEECEEECCTTCS----------SC---TTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred cCceeccCcCcccc----------CC---CCCCCceEEeeeeeeecCCCHHHHHHHHHHHHHH
Confidence 79999988643110 00 0112689999986 46799999999999974
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2e-21 Score=256.66 Aligned_cols=289 Identities=17% Similarity=0.182 Sum_probs=213.7
Q ss_pred HHHHHHHHHHHhC--------CCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEE
Q psy15216 1439 IEKARNEVAQLIY--------ADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVT 1510 (2602)
Q Consensus 1439 ~~~lr~~ia~~~g--------~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~ 1510 (2602)
..++|+.++++++ +++++|++|+|+++++..++.++. ++||+|+++.|+|+++...+. ...|++++
T Consensus 85 ~~~lr~~la~~~~~~~g~~~~~~~~~i~~~~G~~~ai~~~~~~~~----~~gd~Vl~~~p~y~~~~~~~~--~~~g~~~~ 158 (428)
T 1iay_A 85 LPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLA----DPGDAFLVPSPYYPAFNRDLR--WRTGVQLI 158 (428)
T ss_dssp CHHHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHHC----CTTCEEEEESSCCTTHHHHTT--TTTCCEEE
T ss_pred cHHHHHHHHHHHHHhcCCCCCCChhhEEEccChHHHHHHHHHHhC----CCCCeEEEccCCCcchHHHHH--HhcCCEEE
Confidence 4577888888876 678899999999999999999987 799999999999999765331 23599999
Q ss_pred EeccCC--CCCcChhHHHhhccC------CceEEEEeccccccccccC---hHHHHHHhhhcCCEEEEecccccCcc---
Q psy15216 1511 YLKPKN--NGLITLSQLEEKICS------DTILVSVMLVNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQAVGKI--- 1576 (2602)
Q Consensus 1511 ~v~~~~--~~~id~d~l~~~i~~------~t~lv~l~~~~n~tG~~~~---l~~I~~ia~~~gi~vivD~a~~~g~~--- 1576 (2602)
.++.+. ++.+|+++|++++++ ++++|++++|+||||.++| +++|.++|++||+++|+|++|+....
T Consensus 159 ~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~ 238 (428)
T 1iay_A 159 PIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTP 238 (428)
T ss_dssp EECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSS
T ss_pred EeecCCccCCcCCHHHHHHHHHHHHhcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEeccccccccCCC
Confidence 998864 456899999999863 7899999999999999999 99999999999999999999975221
Q ss_pred -ccc---CCC------CCcc--EEEEccccccCCCc--eEEEEE-ecCCCCccccccccCCccccCCCCCcchhHHHHHH
Q psy15216 1577 -DIN---IQN------YKVD--LMSFSAHKIYGPKG--IGALYI-RRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMG 1641 (2602)
Q Consensus 1577 -~~~---l~~------~~~D--~~v~S~~K~~gp~G--~G~l~~-~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~ 1641 (2602)
..+ +.. +++| +++.|+||.+|++| +|++++ ++++++.+.... ..++.+.+.+.++.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~d~viv~~s~sK~~g~~Glr~G~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~a~~ 309 (428)
T 1iay_A 239 QFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARKMS---------SFGLVSTQTQYFLA 309 (428)
T ss_dssp CCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGGGCEEEEEESCHHHHHHHHHHH---------TTSCCCHHHHHHHH
T ss_pred CccCHHHhccccccccCCCCcEEEEecchhhcCCCCceEEEEEeCCHHHHHHHHHHH---------hcccCCHHHHHHHH
Confidence 111 111 1256 88999999888778 699999 454554444321 11345556666666
Q ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecC-------CcHHHHHhc--C-C
Q psy15216 1642 EAFRL---ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI-------EGESLLMAI--K-D 1708 (2602)
Q Consensus 1642 ~aL~~---~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~-------~~~~~~~~L--~-g 1708 (2602)
.+++. ....+++..+++.++++++.+.|.+ . ++.+..+. ...+..+.++.. ...++...| + |
T Consensus 310 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g 384 (428)
T 1iay_A 310 AMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEV-V-GIKCLKNN---AGLFCWMDLRPLLRESTFDSEMSLWRVIINDVK 384 (428)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-T-TCCBCCCS---SSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSC
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHh-c-CCcccCCC---eeEEEEEechhhcCCCchhHHHHHHHHHHHhCC
Confidence 66662 3345678888999999999999987 3 65544221 122333444431 123455555 4 9
Q ss_pred EEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1709 IAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1709 I~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
|.+++|..|... ..+++||+++ ..+.+++++++++|++.
T Consensus 385 i~v~~~~~~~~~-----------------~~~~iRis~~-~~~~e~i~~~~~~l~~~ 423 (428)
T 1iay_A 385 LNVSPGSSFECQ-----------------EPGWFRVCFA-NMDDGTVDIALARIRRF 423 (428)
T ss_dssp EECEEGGGGTCS-----------------SSSEEEEECS-SSCHHHHHHHHHHHHHH
T ss_pred EEEeCchhhCCC-----------------CCCEEEEEEe-cCCHHHHHHHHHHHHHH
Confidence 999998876532 1278999998 57999999999999873
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} | Back alignment and structure |
|---|
Probab=99.86 E-value=8.3e-21 Score=254.21 Aligned_cols=324 Identities=15% Similarity=0.084 Sum_probs=223.7
Q ss_pred CCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhC--CCCCcEEEeCCHHHHHHHHHHhcccccccCC
Q psy15216 9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIY--ADPREIIWTSGATESNNLAIKGAAHFYKKRG 86 (2602)
Q Consensus 9 ~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g--~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~g 86 (2602)
.|+.++++..+.+....+. ....|........+.+.+.+++.+.+| +++++|++|+|+++|+.+++.++. .++|
T Consensus 107 ~p~~~~~~a~~~l~~~~~~-~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~---~~~g 182 (500)
T 3tcm_A 107 FSADSISRAKQILAMIPGR-ATGAYSHSQGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLI---RNEK 182 (500)
T ss_dssp SCHHHHHHHHHHHTTSTTS-CSSSCCCTTCCHHHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHHC---CSTT
T ss_pred CCHHHHHHHHHHHHcCCCC-cCCCcCCCcChHHHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHHc---CCCC
Confidence 5666777777766542110 111222222223333444444444444 577899999999999999999985 3589
Q ss_pred CEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCC--CccChHHHHhhccC------CceEEEEecccCccccccc---H
Q psy15216 87 KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN--GLITLSQLEEKICS------DTILVSVMLVNNEIGVIQP---I 155 (2602)
Q Consensus 87 d~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~--~~ld~e~l~~~i~~------~tklv~i~~~~npTG~~~~---l 155 (2602)
|.|+++.|.|+++...+... |++++.++++++ +.+|+++|++++++ ++++|++++|+||||.+++ +
T Consensus 183 d~Vlv~~p~y~~~~~~~~~~---g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~~s~~~l 259 (500)
T 3tcm_A 183 DGILVPIPQYPLYSASIALH---GGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQ 259 (500)
T ss_dssp EEEEEEESCCTHHHHHHHHT---TCEEEEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCCCCHHHH
T ss_pred CEEEEeCCCcHhHHHHHHHc---CCEEEEEecccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCcccCCHHHH
Confidence 99999999999988777665 999999988764 58999999999976 7899999999999999998 4
Q ss_pred HHHHHHHHhcCCEEEEecccccccc-----cccCC---------CCCc-cEEEecccccc-CCCC--cEEEEE---ecCC
Q psy15216 156 LEIGELCRSKGVIFHCDAAQAVGKI-----DINIQ---------NYKV-DLMSFSAHKIY-GPKG--IGALYI---RRNP 214 (2602)
Q Consensus 156 ~~I~~la~~~g~~livD~a~a~g~~-----~~dl~---------~~~~-D~~~~S~~K~~-Gp~G--~G~l~~---~~~~ 214 (2602)
++|+++|++||+++|+|++|+.... ..++. ..+. .+++.|+||.+ |++| +||+++ ++++
T Consensus 260 ~~i~~la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~ 339 (500)
T 3tcm_A 260 YDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGYFEITGFSAPV 339 (500)
T ss_dssp HHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCCEEEEEESCCTTH
T ss_pred HHHHHHHHHcCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccceEEEEEeCCCHHH
Confidence 5566779999999999999875322 11110 1112 36677999966 7777 799988 6666
Q ss_pred CCcccceecCCCccccccccCcchhHHHHHHHHHH----------HHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeC
Q psy15216 215 RTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFR----------LARIEMKEELKRILFLQKRLYNGLMESIEEIYING 284 (2602)
Q Consensus 215 ~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~----------~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~ 284 (2602)
++.+.... ....+++.++..++..+++ ......+...++++++++++.+.|.+ ++|+.+..
T Consensus 340 ~~~l~~~~--------~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~-~~g~~~~~ 410 (500)
T 3tcm_A 340 REQIYKIA--------SVNLCSNITGQILASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNK-LEGITCNE 410 (500)
T ss_dssp HHHHHHHH--------HTTCCCCHHHHHHHHHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-STTEECCC
T ss_pred HHHHHHHH--------hcccCCCHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCcEEec
Confidence 66654322 1134567777777766664 12344677888899999999999987 68988875
Q ss_pred CCCCCCCceEEEEEc--c----------cChhH-HH-HHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEE
Q psy15216 285 DMNNRIPHNLNISFN--F----------IEGES-LL-MAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRF 348 (2602)
Q Consensus 285 ~~~~~~~~~~~~~~~--~----------~~~~~-~~-~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi 348 (2602)
+... ...++.+. . ...+. ++ ..| +||.+.+|..|... ...+++|+
T Consensus 411 ~~g~---~~~~~~~~lp~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~----------------~g~~~iRi 471 (500)
T 3tcm_A 411 AEGA---MYVFPQICLPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQV----------------PGTWHFRC 471 (500)
T ss_dssp CCBT---TEECCEECCCHHHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCCC----------------TTCCBEEE
T ss_pred CCeE---EEEeeeecCchhhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCC----------------CCCCEEEE
Confidence 5432 12221121 1 11122 22 233 69999999988642 11368999
Q ss_pred ecCCCCCHHHHHHHHHHHHhh
Q psy15216 349 TIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 349 s~~~~~t~edid~li~~L~~~ 369 (2602)
+++ ++++++++++++|++.
T Consensus 472 s~~--~~~e~i~~~i~~l~~~ 490 (500)
T 3tcm_A 472 TIL--PQEDKIPAVISRFTVF 490 (500)
T ss_dssp ESC--SCTTTHHHHHHHHHHH
T ss_pred EEC--CCHHHHHHHHHHHHHH
Confidence 998 7889999999999864
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=9.7e-21 Score=249.47 Aligned_cols=294 Identities=13% Similarity=0.070 Sum_probs=214.8
Q ss_pred HHHHHHHHHHHHhCCCC---------CcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcE
Q psy15216 1438 AIEKARNEVAQLIYADP---------REIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFR 1508 (2602)
Q Consensus 1438 ~~~~lr~~ia~~~g~~~---------~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~ 1508 (2602)
+.+.+.+.+++.+|.+. ++|++|+|+++|+++++.++. ++||+|++++|+|+++...++. .|++
T Consensus 83 lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~----~~gd~Vlv~~p~y~~~~~~~~~---~g~~ 155 (425)
T 2r2n_A 83 LLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMII----NPGDNVLLDEPAYSGTLQSLHP---LGCN 155 (425)
T ss_dssp HHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHC----CTTCEEEEESSCCHHHHHHHGG---GTCE
T ss_pred HHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhC----CCCCEEEEeCCCcHHHHHHHHH---cCCE
Confidence 44555555555568753 589999999999999999987 8999999999999997766544 4999
Q ss_pred EEEeccCCCCCcChhHHHhhcc------------CCceEEEE-eccccccccccChH---HHHHHhhhcCCEEEEecccc
Q psy15216 1509 VTYLKPKNNGLITLSQLEEKIC------------SDTILVSV-MLVNNEIGVIQPIL---EIGELCRSKGVIFHCDAAQA 1572 (2602)
Q Consensus 1509 v~~v~~~~~~~id~d~l~~~i~------------~~t~lv~l-~~~~n~tG~~~~l~---~I~~ia~~~gi~vivD~a~~ 1572 (2602)
++.++.+.++ +|+++|+++++ +++++|++ ++++||||.++|.+ +|+++|++||+++|+|++|+
T Consensus 156 ~~~v~~~~~~-~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~li~De~~~ 234 (425)
T 2r2n_A 156 IINVASDESG-IVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLIIEDDPYY 234 (425)
T ss_dssp EEEECEETTE-ECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTG
T ss_pred EEEeCcCCCC-CCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCcc
Confidence 9999887654 89999999987 46888866 79999999999955 99999999999999999987
Q ss_pred c----Cccccc---CCCCCccEEEEccccccCCCc--eEEEEEecCCCCccccccccCCccccCCCCCcchhHHHHHHHH
Q psy15216 1573 V----GKIDIN---IQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEA 1643 (2602)
Q Consensus 1573 ~----g~~~~~---l~~~~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~a 1643 (2602)
. |..+.+ +...+.++++.|+||.+| +| +||+++++++++.+..... ...++.+...+.++.++
T Consensus 235 ~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~~-~GlRiG~~~~~~~l~~~l~~~~~-------~~~~~~~~~~q~a~~~~ 306 (425)
T 2r2n_A 235 FLQFNKFRVPTFLSMDVDGRVIRADSFSKIIS-SGLRIGFLTGPKPLIERVILHIQ-------VSTLHPSTFNQLMISQL 306 (425)
T ss_dssp GGBSSSSCCCCTGGGCTTSCEEEEEESTTTTC-STTCCEEEEEEHHHHHHHHHHHH-------TTTCSSCHHHHHHHHHH
T ss_pred cccCCCCCCCCccccCCCCCEEEEccchhhcc-CccceEEEecCHHHHHHHHHHHH-------HhcCCCCHHHHHHHHHH
Confidence 3 222222 222345688999999888 67 7999999877666554321 12345667777777777
Q ss_pred HHHH-----HHHHHHHHHHHHHHHHHHHHHHhhcCCcE-EEeCCCCCCCCceEEEEEec-CCcHH-HHHhc--CCEEEcc
Q psy15216 1644 FRLA-----RIEMKEELKRILFLQKRLYNGLMESIEEI-YINGDMNNRIPHNLNISFNF-IEGES-LLMAI--KDIAVSS 1713 (2602)
Q Consensus 1644 L~~~-----~~~~~~~~~~~~~l~~~l~~~L~~~~~gl-~i~~~~~~~~~~~~~~~~~~-~~~~~-~~~~L--~gI~v~~ 1713 (2602)
|+.. ...+++.+++++++++++.+.|.+.++++ .+..+ .. .....+.++. .+..+ +...| +||.+++
T Consensus 307 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p-~~--g~~~~~~~~~~~~~~~~~~~~l~~~gv~v~p 383 (425)
T 2r2n_A 307 LHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVP-AA--GMFLWIKVKGINDVKELIEEKAVKMGVLMLP 383 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEECCC-SB--SSEEEEEETTCSCCHHHHHTHHHHTTEECEE
T ss_pred HHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCC-Cc--eEEEEEEeCCCCCHHHHHHHHHHHCCcEEec
Confidence 7642 24467778888999999999998755665 33322 21 2333444443 23444 34444 8999999
Q ss_pred ccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1714 GSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1714 g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
|..|... .....+++||+++. .+.+++++++++|++.
T Consensus 384 g~~f~~~--------------~~~~~~~iRis~~~-~~~~~i~~~~~~l~~~ 420 (425)
T 2r2n_A 384 GNAFYVD--------------SSAPSPYLRASFSS-ASPEQMDVAFQVLAQL 420 (425)
T ss_dssp GGGGSSS--------------TTSCCCEEEEECSS-CCHHHHHHHHHHHHHH
T ss_pred hhhhcCC--------------CCCCCCEEEEEeCC-CCHHHHHHHHHHHHHH
Confidence 9887642 00123789999984 5999999999999874
|
| >3h0x_A 78 kDa glucose-regulated protein homolog; structural genomics, APC89502.3, peptide binding, chaperone, BIP, PSI-2; 1.92A {Saccharomyces cerevisiae} PDB: 1ckr_A 7hsc_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-21 Score=212.66 Aligned_cols=124 Identities=43% Similarity=0.631 Sum_probs=120.3
Q ss_pred eeccccccceEEeeccEEEEEEecCCcCCCCcEEEEEeecccccceeEEEeecCcccccCCceeEEEEeeCCCCCCCCcc
Q psy15216 2406 LLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRA 2485 (2602)
Q Consensus 2406 ~~d~~~~~~gi~~~~~~~~~ii~k~t~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~~~~~~~g~~ 2485 (2602)
+.|++|+|||+++.+|.|.+||+||++||+++++.|+|..|||+.+.|.||||++..+.+|.+||+|.|+|+||.|+|.+
T Consensus 2 ~~Dv~p~slGi~~~gg~~~~lI~rnt~iP~~k~~~f~t~~d~Q~~v~i~VyqGe~~~~~dn~~LG~f~l~gipp~p~G~~ 81 (152)
T 3h0x_A 2 NADVNALTLGIETTGGVMTPLIKRNTAIPTKKSQIFSTAVDNQPTVMIKVYEGERAMSKDNNLLGKFELTGIPPAPRGVP 81 (152)
T ss_dssp -CCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEECCSSTTCCCEEEEEEESSCSBGGGSEEEEEEEECCCCCCCTTCS
T ss_pred ccceeccEEEEEEcCCEEEEEEECcCccCEEEEEEEEeCCCCcceeeeeEEEcCccccccCcEEEEEEEeCCCCCCCCCc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEEcCCccEEEEEEeecCCcEEEEEEecC-CCCChHHHhc
Q psy15216 2486 RIKVTYQVDADGLLSIFAYEKISGKKKFITIKPF-YNMNLDEIKN 2529 (2602)
Q Consensus 2486 ~i~v~f~id~~g~l~V~a~~~~tg~~~~~~i~~~-~~l~~~ei~~ 2529 (2602)
+|+|+|+||.||+|+|+|.++.||++..++|... ++||++||++
T Consensus 82 ~I~Vtf~iD~nGiL~V~a~d~~tg~~~~i~I~~~~~~ls~~ei~~ 126 (152)
T 3h0x_A 82 QIEVTFALDANGILKVSATDKGTGKSESITITNDKGRLTQEEIDR 126 (152)
T ss_dssp CEEEEEEECTTSEEEEEEEETTTCCEEEEEEECCTTCCCHHHHHH
T ss_pred eEEEEEEEcCCCEEEEEEEEcCCCcEeEEEEecCCCCCCHHHHHH
Confidence 9999999999999999999999999999999987 7899999996
|
| >4eb5_C NIFU protein (NIFU-1); scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_C* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.2e-22 Score=213.14 Aligned_cols=92 Identities=54% Similarity=0.955 Sum_probs=86.5
Q ss_pred hhhhhhhhhhcCCCCcCcccCCCCcceeeeecCCCCccEEEEEEEEcCCCcEEeeeeeccccchhHhhHHHHHHHHcCCC
Q psy15216 1770 SYSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKTYGCGSAIASSSLVTEWVKGKT 1849 (2602)
Q Consensus 1770 ~y~~~i~dh~~~p~~~g~~~~~~~~~~~~~~~~~~cgd~~~~~~~~~~~~~i~~~~~~~~gc~~~~a~~s~~~~~~~g~~ 1849 (2602)
+|+++|+|||+||||+|.+++++ ++++++||+|||.|+|||+|+ +|+|+|++|+++||+++||||||+||+++|||
T Consensus 1 lY~e~Ildh~~nPrn~G~l~~~d---~~~~~~nP~CGD~i~l~lkv~-d~~I~D~~F~g~GCais~ASaS~mtelv~GKt 76 (153)
T 4eb5_C 1 MYSDKVFDHFQNPRNVGKIEDAD---GVGTVGNPVCGDLMTIYIKVK-DNRIEDIKFQTFGCAAAIATSSMATEMAKGKT 76 (153)
T ss_dssp -CCHHHHHHHHSCSSBSCCSSCS---EEEEEECTTTCCEEEEEEEES-SSBEEEEEEEEESCHHHHHHHHHHHHHHTTCB
T ss_pred CcHHHHHHHHhCCCCCCCCCCCC---eEEEeCCCCCCCEEEEEEEec-CCeEEEEEEEEeCcHHHHHHHHHHHHHHcCCC
Confidence 59999999999999999999887 889999999999999999995 78999999999999999999999999999999
Q ss_pred hhhhhcccccchhhhh
Q psy15216 1850 LDEAMSIKNTDIAEEL 1865 (2602)
Q Consensus 1850 ~~~~~~i~~~~i~~~l 1865 (2602)
++||..+++++++..|
T Consensus 77 leEA~~i~~~~i~~~L 92 (153)
T 4eb5_C 77 IEEALKITRDAVAEAL 92 (153)
T ss_dssp HHHHTTCCHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHh
Confidence 9999999988777654
|
| >2z7e_A ISCU protein, NIFU-like protein; iron-sulfur cluster, iron, biosynthesis, [2Fe-2S], asymmetric trimer, three conserved Cys; 2.30A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.9e-22 Score=215.89 Aligned_cols=95 Identities=57% Similarity=0.940 Sum_probs=88.7
Q ss_pred hhhhhhHhhhhcccCCCCCCCCCCCCCcceeeeeCCCCcccEEEEEEEEc-CCCceEeeeeeccccchhHhhHHHHHHHH
Q psy15216 371 FFMSYSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVN-KNGVITDAKFKTYGCGSAIASSSLVTEWV 449 (2602)
Q Consensus 371 ~~~~y~~~~~~hy~~p~n~g~~~~~~~~~~~~~~~~~~cgd~~~~~~~~~-~~~~i~~~~~~~~gc~~~~a~~s~~~~~~ 449 (2602)
|.++|+++++|||+||||+|.+++++ ++++++||+|||.|+|+|+|| ++|+|+|++|+|+||+++|||||++|+++
T Consensus 1 m~~lY~e~Ildh~~nPrn~G~l~~~d---~~~~~~np~CGD~i~l~lkvd~~~g~I~d~~F~~~GCais~ASaS~mte~v 77 (157)
T 2z7e_A 1 MSFEYNEKVLDHFLNPRNVGVLEDAN---GVGQCGNPACGAAMLFTIKVNPENDVIEDVRFKTFGCGSAIAVSSMLTEMV 77 (157)
T ss_dssp CTTHHHHHHHHHHHSCSSBSCCTTCS---EEEEEEETTTTEEEEEEEEECTTTCBEEEEEEEEESCTTHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHhCCCCCCCCCCCC---eEEEeCCCCCCCEEEEEEEEecCCCeEEEEEEEecCCHHHHHHHHHHHHHH
Confidence 45789999999999999999999887 889999999999999999997 67899999999999999999999999999
Q ss_pred cCCChhhhhhccccchhhh
Q psy15216 450 KGKTLDEAMSIKNTDIAEE 468 (2602)
Q Consensus 450 ~g~~~~e~~~i~~~~i~~~ 468 (2602)
+|||++||..++++++.+.
T Consensus 78 ~Gkt~~EA~~i~~~~i~e~ 96 (157)
T 2z7e_A 78 KGKPIQYALNLTYKDIFEE 96 (157)
T ss_dssp TTSBHHHHHHCCHHHHHHH
T ss_pred cCCcHHHHHHHHhccHHHH
Confidence 9999999999998766554
|
| >4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.2e-20 Score=246.17 Aligned_cols=325 Identities=14% Similarity=0.116 Sum_probs=231.0
Q ss_pred CHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCC----------cEEEeCCHHHHHHHHHHhhh
Q psy15216 1406 DPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPR----------EIIWTSGATESNNLAIKGAA 1475 (2602)
Q Consensus 1406 ~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~----------~iv~t~gaT~al~~al~~l~ 1475 (2602)
+..+.+.+...+.. +. ..|..++...++..++.+++++++|.+.. ..+||+|+|+|+..++.+..
T Consensus 92 ~~~~~~~~~~~~n~---~~--~~~~~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar 166 (481)
T 4e1o_A 92 PSLLGDMLADAINC---LG--FTWASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAAR 166 (481)
T ss_dssp HHHHHHHHHHHHCC---CC--SSTTTCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCc---cc--CCcCCCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHH
Confidence 44455666665532 22 23455677788888999999999998642 57999999999999998876
Q ss_pred hhhc---------------cCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccCC------ce
Q psy15216 1476 HFYK---------------KRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSD------TI 1534 (2602)
Q Consensus 1476 ~~~~---------------~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~~------t~ 1534 (2602)
.... .++++|+++..+|+++..++... |++++.+++++++.+|+++|+++|+++ +.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~~~~~~---g~~~~~v~~~~~~~~d~~~Le~~i~~~~~~g~~~~ 243 (481)
T 4e1o_A 167 KNKILEMKTSEPDADESSLNARLVAYASDQAHSSVEKAGLIS---LVKMKFLPVDDNFSLRGEALQKAIEEDKQRGLVPV 243 (481)
T ss_dssp HHHHHHHHHHCTTSCHHHHHTTEEEEEETTSCHHHHHHHHHH---TCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHhhhcCcccccccccCCeEEEEcCcchHHHHHHHHhC---CCceEEEEcCCCCcCCHHHHHHHHHHHHhCCCCcE
Confidence 3211 26789999999999998887765 899999999888999999999999764 67
Q ss_pred EEEEeccccccccccChHHHHHHhhhcCCEEEEecccccCccccc-----CCCC-CccEEEEcccc-ccCCCceEEEEEe
Q psy15216 1535 LVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDIN-----IQNY-KVDLMSFSAHK-IYGPKGIGALYIR 1607 (2602)
Q Consensus 1535 lv~l~~~~n~tG~~~~l~~I~~ia~~~gi~vivD~a~~~g~~~~~-----l~~~-~~D~~v~S~~K-~~gp~G~G~l~~~ 1607 (2602)
+|++++++|+||.+.|+++|+++|++||+|+|+|+||+.+....+ +... .+|++++++|| +++|.|+|+++++
T Consensus 244 ~vv~~~~~t~~G~id~l~~I~~la~~~~~~lhvDaA~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~p~g~g~l~~~ 323 (481)
T 4e1o_A 244 FVCATLGTTGVCAFDCLSELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFWVK 323 (481)
T ss_dssp EEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEES
T ss_pred EEEEecCCCCCcCcCCHHHHHHHHHHcCCeEEeehhhHHHHHhChhhHHHhcCcccCCEEEEChHHhcCCCCceEEEEEe
Confidence 899999999999999999999999999999999999987643221 1111 25999999999 6779999999998
Q ss_pred cCCC--Cc--cccccccCCc--------cccCCCCCcchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy15216 1608 RNPR--TR--IEAQIHGGGH--------EYGLRSGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIE 1674 (2602)
Q Consensus 1608 ~~~~--~~--l~~~~~g~~~--------~~~~~~gt~~~~~~~al~~aL~-~~~~~~~~~~~~~~~l~~~l~~~L~~~~~ 1674 (2602)
++.. .. ..+.+..... ..... ++.. ....++.+++. +...+++++.++..++++++.+.|.+ .+
T Consensus 324 ~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~-~~r~-~~~l~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~-~~ 400 (481)
T 4e1o_A 324 DKYKLQQTFSVNPIYLRHANSGVATDFMHWQIP-LSRR-FRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRN-DP 400 (481)
T ss_dssp BHHHHHTTTCCCCGGGCCTTTTTSCCGGGGSSS-SCCC-CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CT
T ss_pred CHHHHHHHhcCCchhccCcccCCCCCccccccc-CCCC-ccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc-CC
Confidence 6421 11 1222211110 00111 1222 23345556666 44567899999999999999999987 78
Q ss_pred cEEEeCCCCCCCCceEEEEEecCC--cHHHHHhc--CC-EEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCC-
Q psy15216 1675 EIYINGDMNNRIPHNLNISFNFIE--GESLLMAI--KD-IAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGR- 1748 (2602)
Q Consensus 1675 gl~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~L--~g-I~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~- 1748 (2602)
++.+..++. ..+..|.++..+ ..++...| +| +.+.++.. . ...++|+++..
T Consensus 401 g~~~~~~~~---~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-~-------------------g~~~lR~~~~~~ 457 (481)
T 4e1o_A 401 SFEIPAKRH---LGLVVFRLKGPNSLTENVLKEIAKAGRLFLIPATI-Q-------------------DKLIIRFTVTSQ 457 (481)
T ss_dssp TEECCSCCC---SSEEEEEESSCHHHHHHHHHHHHHHCSSBCEEEEE-T-------------------TEEEEEEECCCT
T ss_pred CeEEecCCc---eeEEEEEeCCchHHHHHHHHHHHhCCeEEEEeeEE-C-------------------CEEEEEEEeCCC
Confidence 999875432 244555554321 23455555 34 22222111 0 12679999775
Q ss_pred CCCHHHHHHHHHHHHH
Q psy15216 1749 FTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1749 ~~t~edid~li~~L~~ 1764 (2602)
.+|.+||++++++|++
T Consensus 458 ~tt~~di~~~~~~i~~ 473 (481)
T 4e1o_A 458 FTTRDDILRDWNLIRD 473 (481)
T ss_dssp TCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 4589999999999987
|
| >2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.7e-21 Score=255.66 Aligned_cols=331 Identities=18% Similarity=0.172 Sum_probs=236.1
Q ss_pred CCCCCCCHHHHHHHHHHHhh--hcCCCCCCCcchhhhHHHHHH-HHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhccc
Q psy15216 4 SATTPIDPRVVDKMIPYLRV--QFGNPASRNHIYGWTAEKAIE-KARNEVAQLIYADPREIIWTSGATESNNLAIKGAAH 80 (2602)
Q Consensus 4 a~~~~~p~~v~~a~~~~l~~--~~~~p~~~~~~~~~~~~~~~~-~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~ 80 (2602)
++.++.|+.+.+++.+.+.. ..++|+.. +..+.......+ .+|+++++++|++++++++++| |+|+.+++.++.
T Consensus 30 ~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~-~~~g~~~~~~~e~~ar~~la~~~g~~~~~i~~~sG-t~a~~~~~~~~~- 106 (407)
T 2dkj_A 30 ASENFVSKQVREAVGSVLTNKYAEGYPGAR-YYGGCEVIDRVESLAIERAKALFGAAWANVQPHSG-SQANMAVYMALM- 106 (407)
T ss_dssp TTCCCCCHHHHHHHTSGGGGCCCCEETTEE-SSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSH-HHHHHHHHHHHC-
T ss_pred cCCCCCCHHHHHHHHhhhhcCcccCCCccc-ccCCchHHHHHHHHHHHHHHHHhCCCcceEEecch-HHHHHHHHHHhc-
Confidence 44456699999999998864 22344331 111222222333 4678999999997655555554 669999999986
Q ss_pred ccccCCCEEEEcCCCCcccH---HHHHHHHhCCc--EEEEeccCC-CCccChHHHHhhccC-CceEEEEecccCcccccc
Q psy15216 81 FYKKRGKHIITVQTEHKSVL---DSIRKLENDGF--RVTYLKPKN-NGLITLSQLEEKICS-DTILVSVMLVNNEIGVIQ 153 (2602)
Q Consensus 81 ~~~~~gd~Vlv~~~~~~s~~---~~~~~~~~~G~--~v~~v~~~~-~~~ld~e~l~~~i~~-~tklv~i~~~~npTG~~~ 153 (2602)
++||+|+++.++|+++. ..+... |. .++.+++++ ++.+|++++++++++ ++++|++++|+|| ...
T Consensus 107 ---~~gd~Vl~~~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~p~~~--~~~ 178 (407)
T 2dkj_A 107 ---EPGDTLMGMDLAAGGHLTHGSRVNFS---GKLYKVVSYGVRPDTELIDLEEVRRLALEHRPKVIVAGASAYP--RFW 178 (407)
T ss_dssp ---CTTCEEEEECGGGTCCGGGTCTTSHH---HHHSEEEEECCCTTTSSCCHHHHHHHHHHHCCSEEEECCSSCC--SCC
T ss_pred ---CCCCEEEEecccccCccchHHHHHhc---CceEEEEecCCCcccCccCHHHHHHHHhhcCCeEEEEeccccC--CCC
Confidence 79999999999999984 333333 44 555555443 678999999999984 8999999999987 788
Q ss_pred cHHHHHHHHHhcCCEEEEecccccccccccCCC---CCccEEEecccc-ccCCCCcEEEEEe-cCCCCcccceecCCCcc
Q psy15216 154 PILEIGELCRSKGVIFHCDAAQAVGKIDINIQN---YKVDLMSFSAHK-IYGPKGIGALYIR-RNPRTRIEAQIHGGGHE 228 (2602)
Q Consensus 154 ~l~~I~~la~~~g~~livD~a~a~g~~~~dl~~---~~~D~~~~S~~K-~~Gp~G~G~l~~~-~~~~~~l~~~~~g~~~~ 228 (2602)
|+++|.++|++||+++|+|++|+.|..+.+... ..+|++++|+|| +.|++| |+++++ +++++.+.+....
T Consensus 179 ~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~l~g~~~-G~~~~~~~~~~~~l~~~~~~---- 253 (407)
T 2dkj_A 179 DFKAFREIADEVGAYLVVDMAHFAGLVAAGLHPNPLPYAHVVTSTTHKTLRGPRG-GLILSNDPELGKRIDKLIFP---- 253 (407)
T ss_dssp CHHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCCCTTTCSEEEEESSGGGCCCSC-EEEEESCHHHHHHHHHHHTT----
T ss_pred CHHHHHHHHHHcCCEEEEEccccccccccCccCCccccccEEEEeccccCCCCCc-eEEEECCHHHHHHHHhhhcc----
Confidence 999999999999999999999987543322111 137999999999 557886 999998 6777666554322
Q ss_pred ccccccCcchhHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc--cChhH
Q psy15216 229 YGLRSGTLATHQIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF--IEGES 305 (2602)
Q Consensus 229 ~~~~~gt~~~~~~~al~~al~~~-~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~--~~~~~ 305 (2602)
+..++++...+.++.++++.. ..++++..++..++++++.+.|.+ . ++.+..++. ...++.+.++. .+...
T Consensus 254 --~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~--~~~~~~~~~~~~~~~~~~ 327 (407)
T 2dkj_A 254 --GIQGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAEELAR-R-GYRIVTGGT--DNHLFLVDLRPKGLTGKE 327 (407)
T ss_dssp --TTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-T-TCEEGGGSC--SSSEEEEECGGGTCCHHH
T ss_pred --cccCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh-C-CceeecCCC--CceEEEEECcccCCCHHH
Confidence 234567777777777888864 356789999999999999999988 4 788775322 23455566653 35666
Q ss_pred HHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCC----CCHHHHHHHHHHHHhh
Q psy15216 306 LLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRF----TTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 306 ~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~----~t~edid~li~~L~~~ 369 (2602)
+...| +||.++++..+... .+ ...++++|++++.+ .+++|+++++++|++.
T Consensus 328 ~~~~l~~~gi~v~~~~~~~~~----------~~---~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~ 384 (407)
T 2dkj_A 328 AEERLDAVGITVNKNAIPFDP----------KP---PRVTSGIRIGTPAITTRGFTPEEMPLVAELIDRA 384 (407)
T ss_dssp HHHHHHHTTEECEECCCTTCS----------SC---TTTCSEEEEECHHHHHTTCCGGGHHHHHHHHHHH
T ss_pred HHHHHHHcCceecCCcCcccc----------cc---ccCCCceeeecccccccCCCHHHHHHHHHHHHHH
Confidence 76666 79999987643110 00 01137899999653 6899999999999974
|
| >2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.86 E-value=8.2e-22 Score=259.75 Aligned_cols=276 Identities=16% Similarity=0.120 Sum_probs=209.4
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEecc--
Q psy15216 1437 KAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP-- 1514 (2602)
Q Consensus 1437 ~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~-- 1514 (2602)
....++++++++ +|++ +++++|+|+|+|+..+++++. ++||+|+++.++|+++...+... |+++++++.
T Consensus 57 ~~~~~~~~~la~-~g~~-~~v~~~~G~t~a~~~~~~a~~----~~gd~Vlv~~~~h~s~~~~~~~~---G~~~~~v~~~~ 127 (446)
T 2x3l_A 57 EVILKSMKQVEK-HSDY-DGYFLVNGTTSGILSVIQSFS----QKKGDILMARNVHKSVLHALDIS---QQEGHFIETHQ 127 (446)
T ss_dssp SHHHHHHHHHCS-CTTE-EEEEESSHHHHHHHHHHHTTT----TSSSCEEECTTCCHHHHHHHHHH---TCCEEECEEEE
T ss_pred hHHHHHHHHHHh-cCCC-ceEEEeCCHHHHHHHHHHHhc----CCCCEEEEecCccHHHHHHHHHc---CCeEEEEeCee
Confidence 356889999999 9986 679999999999999999987 89999999999999999888776 899999988
Q ss_pred CCC----CCcChhHHHhhccCCceEEEEeccccccccccChHHHHHHhhhcCCEEEEecccccCcc-----cccCCCCCc
Q psy15216 1515 KNN----GLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKI-----DINIQNYKV 1585 (2602)
Q Consensus 1515 ~~~----~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~~ia~~~gi~vivD~a~~~g~~-----~~~l~~~~~ 1585 (2602)
+++ +.+|+++| +++++++|++++ .|++|.+.|+++|.++|++||+++|+|++|+. +. +.+....++
T Consensus 128 ~~~~~~~~~~d~~~l---~~~~~~~v~~~~-~n~~G~~~~l~~I~~l~~~~~~~livDea~~~-~~~f~~~~~~~~~~g~ 202 (446)
T 2x3l_A 128 SPLTNHYNKVNLSRL---NNDGHKLVVLTY-PNYYGETFNVEEVIKSLHQLNIPVLIDEAHGA-HFGLQGFPDSTLNYQA 202 (446)
T ss_dssp CTTTSSEEEEEC----------CCEEEEES-SCTTSCCCCHHHHHHHHHHTTCCEEEECTTCT-TTTSTTSCCCGGGGTC
T ss_pred ccccCcCCCCCHHHH---cCCCceEEEEEC-CCCCeEecCHHHHHHHHHhcCCeEEEcchhhh-hhccCCCCCChHHcCC
Confidence 554 56788888 678899999999 56699999999999999999999999999986 22 344445578
Q ss_pred cEEEEcccc-ccCCCceEEEEEecCCCCccccccccCCccccCCCCCcchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q psy15216 1586 DLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIE-MKEELKRILFLQK 1663 (2602)
Q Consensus 1586 D~~v~S~~K-~~gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~-~~~~~~~~~~l~~ 1663 (2602)
|++++|+|| ++|+.|+|+++++++.++ +.++..++ ..+..+++++..++++.++++++... .++..++..++++
T Consensus 203 Di~~~S~~K~l~~~~g~g~l~~~~~~i~-~~~~~~~~---~~~~~~s~~~~~~aal~~a~~~l~~~g~~~~~~~~~~l~~ 278 (446)
T 2x3l_A 203 DYVVQSFHKTLPALTMGSVLYIHKNAPY-RENIIEYL---SYFQTSSPSYLIMASLESAAQFYKTYDSTLFFAKRAQLIE 278 (446)
T ss_dssp SEEEECHHHHSSSCTTCEEEEEETTCTT-HHHHHHHH---HHHSCSSCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred CEEEECCccccccccccEEEEEcCCcCC-HHHHHHHH---HHHcCCCchHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 999999999 788889999999988765 33322111 23456788888888888888765542 3446777777777
Q ss_pred HHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecCCcHHHHHhc--CCEEEc-cccccCCCCCChhHHHHHcCCCccccCC
Q psy15216 1664 RLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDIAVS-SGSACTSASLEPSYVLRALGCNDELAHS 1740 (2602)
Q Consensus 1664 ~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~v~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 1740 (2602)
++++. ++.+..+.+ +....+.+++.+..++...| +||.++ +|. +
T Consensus 279 ~l~~~------g~~~~~~~~---~~~l~i~~~~~~~~~l~~~L~~~GI~v~~~g~------------------------~ 325 (446)
T 2x3l_A 279 CLENK------GFEMLQVDD---PLKLLIKYEGFTGHDIQNWFMNAHIYLELADD------------------------Y 325 (446)
T ss_dssp HHHHH------TCEEEECSS---TTEEEEECTTSCHHHHHHHHHHTTEEESEECS------------------------S
T ss_pred HHHHc------CCEECcCCC---CeEEEEEeCCcCHHHHHHHHHHCCCEEEecCC------------------------C
Confidence 77665 455554322 22344444445566676666 799886 221 5
Q ss_pred eEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1741 SIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1741 ~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
++|++++.++|.+++ +++++|++
T Consensus 326 ~iRi~~~~~~t~e~i-~l~~aL~~ 348 (446)
T 2x3l_A 326 QALAILPLWHHDDTY-LFDSLLRK 348 (446)
T ss_dssp CEEEECCCCCTTCCC-CHHHHHHH
T ss_pred EEEEEeecCCCHHHH-HHHHHHHH
Confidence 799999999999999 99999997
|
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=5.2e-21 Score=253.11 Aligned_cols=289 Identities=18% Similarity=0.223 Sum_probs=212.2
Q ss_pred HHHHHHHHHHHhC--------CCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEE
Q psy15216 1439 IEKARNEVAQLIY--------ADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVT 1510 (2602)
Q Consensus 1439 ~~~lr~~ia~~~g--------~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~ 1510 (2602)
..++|++++++++ +++++|++|+|+++|+..++.++. ++||+|+++.+.|+++...+.. ..|++++
T Consensus 88 ~~~l~~~la~~~~~~~~~~~~~~~~~v~~~~gg~~a~~~~~~~l~----~~gd~vl~~~p~~~~~~~~~~~--~~g~~~~ 161 (435)
T 3piu_A 88 LPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLA----DPGEAVLIPTPYYPGFDRDLKW--RTGVEIV 161 (435)
T ss_dssp CHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHC----CTTCEEEEEESCCTTHHHHTTT--TTCCEEE
T ss_pred cHHHHHHHHHHHHHhhCCCCCCCHHHEEEcCChHHHHHHHHHHhc----CCCCeEEECCCccccHHHHHHH--hcCCEEE
Confidence 4678889998887 678899999999999999999987 8999999999999998765431 3499999
Q ss_pred EeccCC--CCCcChhHHHhhccC------CceEEEEeccccccccccCh---HHHHHHhhhcCCEEEEecccccCcc---
Q psy15216 1511 YLKPKN--NGLITLSQLEEKICS------DTILVSVMLVNNEIGVIQPI---LEIGELCRSKGVIFHCDAAQAVGKI--- 1576 (2602)
Q Consensus 1511 ~v~~~~--~~~id~d~l~~~i~~------~t~lv~l~~~~n~tG~~~~l---~~I~~ia~~~gi~vivD~a~~~g~~--- 1576 (2602)
.++.++ ++.+|+++|++++++ ++++|++++|+||||.++|. ++|.++|++||+++|+|++|+.+..
T Consensus 162 ~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~ 241 (435)
T 3piu_A 162 PIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSP 241 (435)
T ss_dssp EEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSS
T ss_pred EeeCCCccCCcCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC
Confidence 999875 355899999999975 89999999999999999984 7888889999999999999975321
Q ss_pred -cccCC----C---------CCccEEEEccccccCCCc--eEEEEEec-CCCCccccccccCCccccCCCCCcchhHHHH
Q psy15216 1577 -DINIQ----N---------YKVDLMSFSAHKIYGPKG--IGALYIRR-NPRTRIEAQIHGGGHEYGLRSGTLATHQIVG 1639 (2602)
Q Consensus 1577 -~~~l~----~---------~~~D~~v~S~~K~~gp~G--~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~a 1639 (2602)
..++. + .+..+++.|+||.+|++| +|++++++ .+.+.+.... ..++.+.....+
T Consensus 242 ~~~~~~~~~~~~~~d~~~~~~~~~i~i~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~ 312 (435)
T 3piu_A 242 SFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS---------SFGLVSSQTQHL 312 (435)
T ss_dssp CCCCHHHHHHC-------CGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHHHHHHHHG---------GGSCCCHHHHHH
T ss_pred CCcCHHHhccccccccccCCCCCEEEEEeeecccCCCceeEEEEEeCCHHHHHHHHHHh---------hcCCCCHHHHHH
Confidence 11111 1 122388899999888777 79999954 3333332211 112344555555
Q ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecC-------CcHHHHHhc--C
Q psy15216 1640 MGEAFR---LARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI-------EGESLLMAI--K 1707 (2602)
Q Consensus 1640 l~~aL~---~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~-------~~~~~~~~L--~ 1707 (2602)
+.+++. +....+++.++++.++++++.+.|.+ .++.+..+.. ..+..+.++.. +..++...| +
T Consensus 313 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~--~g~~~~~~~~---g~~~~~~l~~~~~~~~~~~~~~~~~~l~~~ 387 (435)
T 3piu_A 313 LSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQK--SGISCLNGNA---GLFCWVDMRHLLRSNTFEAEMELWKKIVYE 387 (435)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TTCEECCCCS---SSEEEEECGGGSSSSSHHHHHHHHHHHHHT
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCcccCCCe---eEEEEEEcccccccCCchhHHHHHHHHHHH
Confidence 556665 22445677888899999999999987 3777654322 12333444321 223555555 4
Q ss_pred -CEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1708 -DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1708 -gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
||.+++|..|... ..+++||+++.. |.+++++++++|++.
T Consensus 388 ~gi~v~~g~~~~~~-----------------~~~~iRi~~~~~-~~e~i~~~l~~l~~~ 428 (435)
T 3piu_A 388 VHLNISPGSSCHCT-----------------EPGWFRVCFANL-PERTLDLAMQRLKAF 428 (435)
T ss_dssp SCEECEEGGGGTCS-----------------STTEEEEECSSS-CHHHHHHHHHHHHHH
T ss_pred CCEEEeCCcccCCC-----------------CCCEEEEEeeCC-CHHHHHHHHHHHHHH
Confidence 9999999887542 137999999765 999999999999873
|
| >2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=7.7e-21 Score=248.33 Aligned_cols=328 Identities=16% Similarity=0.119 Sum_probs=226.2
Q ss_pred CHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCEE
Q psy15216 1406 DPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHI 1485 (2602)
Q Consensus 1406 ~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~V 1485 (2602)
++.+.+++.+.++... |..+ ....++|+.+++++|.+ ++++++|+|+|+..++.++. +++||+|
T Consensus 43 ~~~v~~a~~~~~~~~~-------y~~~----~~~~~l~~~la~~~~~~--~~v~~~~Gt~a~~~~l~~~~---~~~gd~v 106 (399)
T 2oga_A 43 RAETDAAIARVLDSGR-------YLLG----PELEGFEAEFAAYCETD--HAVGVNSGMDALQLALRGLG---IGPGDEV 106 (399)
T ss_dssp HHHHHHHHHHHHHHTC-------CSSS----HHHHHHHHHHHHHTTSS--EEEEESCHHHHHHHHHHHTT---CCTTCEE
T ss_pred CHHHHHHHHHHHhcCC-------CCCc----hhHHHHHHHHHHHHCCC--eEEEecCHHHHHHHHHHHhC---CCCcCEE
Confidence 4788888888876421 1111 34678999999999975 68889999999999999982 2799999
Q ss_pred EEcCCCCcchHHHHHHHHhCCcEEEEeccCC-CCCcChhHHHhhccCCceEEEEeccccccccccChHHHHHHhhhcCCE
Q psy15216 1486 ITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVI 1564 (2602)
Q Consensus 1486 lv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~-~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~~ia~~~gi~ 1564 (2602)
+++.++|+++...+.. .|++++.++.++ ++.+|+++|++++++++++|+ ++||||.+.|+++|.++|++||++
T Consensus 107 l~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~---~~n~tG~~~~l~~i~~l~~~~~~~ 180 (399)
T 2oga_A 107 IVPSHTYIASWLAVSA---TGATPVPVEPHEDHPTLDPLLVEKAITPRTRALL---PVHLYGHPADMDALRELADRHGLH 180 (399)
T ss_dssp EEESSSCTHHHHHHHH---TTCEEEEECBCSSSSSBCHHHHHHHCCTTEEEEC---CBCGGGCCCCHHHHHHHHHHHTCE
T ss_pred EECCCccHHHHHHHHH---CCCEEEEEecCCCCCCcCHHHHHHhcCCCCeEEE---EeCCcCCccCHHHHHHHHHHcCCE
Confidence 9999999997766554 499999999886 578999999999999998877 467899999999999999999999
Q ss_pred EEEecccccCcccccCCCCC--ccEEEEccc--cccCCCc-eEEEEEe-cCCCCccccccccCCccccCCC---C---Cc
Q psy15216 1565 FHCDAAQAVGKIDINIQNYK--VDLMSFSAH--KIYGPKG-IGALYIR-RNPRTRIEAQIHGGGHEYGLRS---G---TL 1632 (2602)
Q Consensus 1565 vivD~a~~~g~~~~~l~~~~--~D~~v~S~~--K~~gp~G-~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~---g---t~ 1632 (2602)
+|+|++|+.|... +...++ .|++++|+| |++|++| +|+++.+ +++++.+.+....+.. ..+.. | +.
T Consensus 181 li~Dea~~~g~~~-~~~~~~~~~di~~~S~~~sK~~~~~G~~g~~~~~~~~~~~~l~~~~~~g~~-~~~~~~~~g~~~~~ 258 (399)
T 2oga_A 181 IVEDAAQAHGARY-RGRRIGAGSSVAAFSFYPGKNLGCFGDGGAVVTGDPELAERLRMLRNYGSR-QKYSHETKGTNSRL 258 (399)
T ss_dssp ECEECTTCTTCEE-TTEETTCTTCEEEEECCTTSSSCCSSCCEEEEESCHHHHHHHHHHHBTTCS-STTCCCSCCCBCCC
T ss_pred EEEECcccccCcc-CCeecccccCEEEEeCCCCccCCcCCceEEEEeCCHHHHHHHHHHHhcCcc-ccccccccccCCCc
Confidence 9999999887532 332233 699999995 9888755 6888876 5555555543322211 11111 1 33
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecCCcHHHHHhc--CCEE
Q psy15216 1633 ATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDIA 1710 (2602)
Q Consensus 1633 ~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~ 1710 (2602)
+....+++.++++. ++...++..++++++.+.|.+ ++++.+...+....+....+.+...+..++...| +||.
T Consensus 259 ~~~~~a~~~~~l~~----~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~ 333 (399)
T 2oga_A 259 DEMQAAVLRIRLAH----LDSWNGRRSALAAEYLSGLAG-LPGIGLPVTAPDTDPVWHLFTVRTERRDELRSHLDARGID 333 (399)
T ss_dssp CHHHHHHHHHHHHT----HHHHHHHHHHHHHHHHHHTTT-CTTCBCCCCCTTEECCCSSEEEECSSHHHHHHHHHHTTBC
T ss_pred CHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhcc-CCCccccCCCCCCcceeEEEEEECCCHHHHHHHHHHCCCc
Confidence 44444444445543 345566777888999999987 6777654333221222122334334566676666 7998
Q ss_pred EccccccCCCCCChhHHHHHcCCCcc-------ccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1711 VSSGSACTSASLEPSYVLRALGCNDE-------LAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1711 v~~g~~~~~~~~~~~~~~~~~~~~~~-------~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
++++.. .+.+..+ ....++.... ...+++||+++.++|.+|+++++++|++.
T Consensus 334 v~~~~~-~~~~~~~--~~~~~~~~~~~~p~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~ 392 (399)
T 2oga_A 334 TLTHYP-VPVHLSP--AYAGEAPPEGSLPRAESFARQVLSLPIGPHLERPQALRVIDAVREW 392 (399)
T ss_dssp CBCSCS-SCGGGSH--HHHTTSCCTTSCHHHHHHHHHEEEECCSTTCCHHHHHHHHHHHHHH
T ss_pred eecCCC-Cccccch--hhcccCCCCCCChhHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHH
Confidence 876431 1110001 1122222110 01268999999999999999999999973
|
| >3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6 | Back alignment and structure |
|---|
Probab=99.86 E-value=2.3e-20 Score=247.77 Aligned_cols=324 Identities=14% Similarity=0.115 Sum_probs=228.7
Q ss_pred HHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCC---------cEEEeCCHHHHHHHHHHhhhhh
Q psy15216 1407 PRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPR---------EIIWTSGATESNNLAIKGAAHF 1477 (2602)
Q Consensus 1407 ~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~---------~iv~t~gaT~al~~al~~l~~~ 1477 (2602)
..+.+.+...+. +....|..++...++.+++.+++++++|.+.+ ..+||+|+|+|+..++.+....
T Consensus 88 ~~~~~~l~~~~n-----~~~~~~~~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~ 162 (475)
T 3k40_A 88 AIVADMLSGAIA-----CIGFTWIASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAK 162 (475)
T ss_dssp HHHHHHHHHHHC-----CCSSSCCCCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-----ccccCccCCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHH
Confidence 344455555442 22223455677778888999999999998643 5899999999999998887532
Q ss_pred hc---------------cCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccCC------ceEE
Q psy15216 1478 YK---------------KRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSD------TILV 1536 (2602)
Q Consensus 1478 ~~---------------~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~~------t~lv 1536 (2602)
.. .++++|+++..+|+++..++... |++++.+++++++ +|+++|+++|+++ +.+|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~vi~s~~~H~s~~~~~~~~---g~~~~~v~~d~~~-~d~~~L~~~i~~~~~~~~~~~~v 238 (475)
T 3k40_A 163 KLKEVKELHPEWDEHTILGKLVGYCSDQAHSSVERAGLLG---GVKLRSVQSENHR-MRGAALEKAIEQDVAEGLIPFYA 238 (475)
T ss_dssp HHHHHHHHCTTSCHHHHHHHEEEEEETTSCHHHHHHHHHH---TCEEEEECCBTTB-CCHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHhhccCcccccccccCCeEEEECCCchHHHHHHHHHc---CCceEEEECCCCC-cCHHHHHHHHHHHHHCCCccEEE
Confidence 11 24578999999999998888776 9999999999889 9999999999764 6789
Q ss_pred EEeccccccccccChHHHHHHhhhcCCEEEEecccccCccccc-----CCCC-CccEEEEcccc-ccCCCceEEEEEecC
Q psy15216 1537 SVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDIN-----IQNY-KVDLMSFSAHK-IYGPKGIGALYIRRN 1609 (2602)
Q Consensus 1537 ~l~~~~n~tG~~~~l~~I~~ia~~~gi~vivD~a~~~g~~~~~-----l~~~-~~D~~v~S~~K-~~gp~G~G~l~~~~~ 1609 (2602)
++++++|+||.+.|+++|+++|++||+|+|+|+||+.+....+ +... .+|++++++|| +++|.|+|+++++++
T Consensus 239 ~~~~~~t~~G~~~~l~~I~~la~~~~~~lhvD~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p~g~g~l~~~~~ 318 (475)
T 3k40_A 239 VVTLGTTNSCAFDYLDECGPVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWLKDP 318 (475)
T ss_dssp EEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESSG
T ss_pred EEEecCCCCcCcCCHHHHHHHHHHhCCeEEEeHHhHHHHHhCHhhHHHhcCcccCCEEEECchhccCCCCceEEEEEeCH
Confidence 9999999999999999999999999999999999987653221 1111 36999999999 678999999999865
Q ss_pred C-CC-cc--ccccccCCc--------cccCCCCCcchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCcE
Q psy15216 1610 P-RT-RI--EAQIHGGGH--------EYGLRSGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEI 1676 (2602)
Q Consensus 1610 ~-~~-~l--~~~~~g~~~--------~~~~~~gt~~~~~~~al~~aL~-~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl 1676 (2602)
. +. .+ .+.+..... ..... ++.+ ....++..++. +...+++++.++..++++++.+.|.+ .+++
T Consensus 319 ~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~-~sr~-~~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~-~~g~ 395 (475)
T 3k40_A 319 SWVVNAFNVDPLYLKHDMQGSAPDYRHWQIP-LGRR-FRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVA-DSRF 395 (475)
T ss_dssp GGC---------------------------C-CCGG-GTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-STTE
T ss_pred HHHHHHhcCCccccCCCcCCCCCCccccccc-CCCc-ccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc-CCCE
Confidence 2 21 11 111111100 01111 1222 23455666776 44567899999999999999999988 7899
Q ss_pred EEeCCCCCCCCceEEEEEecC--CcHHHHHhc--CCE-EEccccccCCCCCChhHHHHHcCCCccccCCeEEEecC-CCC
Q psy15216 1677 YINGDMNNRIPHNLNISFNFI--EGESLLMAI--KDI-AVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIG-RFT 1750 (2602)
Q Consensus 1677 ~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~L--~gI-~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~-~~~ 1750 (2602)
++..++. ..++.|.++.. ...++...| +|+ .+.++... ...++|+++. +.+
T Consensus 396 ~l~~~~~---~~iv~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~--------------------g~~~lR~~~~~~~t 452 (475)
T 3k40_A 396 ELAAEIN---MGLVCFRLKGSNERNEALLKRINGRGHIHLVPAKIK--------------------DVYFLRMAICSRFT 452 (475)
T ss_dssp EESSCCB---TTEEEEEESSCHHHHHHHHHHHHHHTSCBCEEEEET--------------------TEEEEEEECCCTTC
T ss_pred EEecCCc---eEEEEEEeCCchHHHHHHHHHHHhCCcEEEEeeEEC--------------------CEEEEEEEeCCCCC
Confidence 9986542 34555665432 134455555 232 22222111 1268999976 456
Q ss_pred CHHHHHHHHHHHHHh
Q psy15216 1751 TEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1751 t~edid~li~~L~~~ 1765 (2602)
|.+||++++++|++.
T Consensus 453 t~~di~~~~~~i~~~ 467 (475)
T 3k40_A 453 QSEDMEYSWKEVSAA 467 (475)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999999973
|
| >3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987} | Back alignment and structure |
|---|
Probab=99.86 E-value=6.6e-22 Score=254.86 Aligned_cols=331 Identities=15% Similarity=0.126 Sum_probs=224.2
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHH-HHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCC
Q psy15216 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEV-AQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRG 86 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~l-A~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~g 86 (2602)
++++.+++++.+.+.+.+..+ ++ +..+++++++ |+++|. ..++++++|+|+|+++++.++. +++|
T Consensus 13 ~~~~~i~~a~~~~~~~~~~~~------~~----~~~~~l~~~~~a~~~g~-~~~~v~~~sgt~al~~al~~l~---~~~G 78 (377)
T 3ju7_A 13 VPVIEYLDELKEIDASHIYTN------YG----PINQRFEQTIMSGFFQN-RGAVTTVANATLGLMAAIQLKK---RKKG 78 (377)
T ss_dssp CCGGGGHHHHHHHHHHTCCSS------SC----HHHHHHHHHHHHHTSTT-CSEEEEESCHHHHHHHHHHHHS---CTTC
T ss_pred CCcHHHHHHHHHHHHcCCccc------CC----HHHHHHHHHHHHHHhCC-CCeEEEeCCHHHHHHHHHHHcC---CCCc
Confidence 566788999999887633221 11 2467899999 999993 4579999999999999999983 3899
Q ss_pred CEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCC-CCccChHHHHhhc-cCC--ceEEEEecccCcccccccHHHHHHHH
Q psy15216 87 KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NGLITLSQLEEKI-CSD--TILVSVMLVNNEIGVIQPILEIGELC 162 (2602)
Q Consensus 87 d~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~-~~~ld~e~l~~~i-~~~--tklv~i~~~~npTG~~~~l~~I~~la 162 (2602)
|+|+++.++|+++..++... |++++++++++ ++.+|++++++++ +++ |++|+ ++||+|.+.|+++|.++|
T Consensus 79 d~Vi~~~~~~~~~~~~~~~~---G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~---~~~~~G~~~~~~~i~~la 152 (377)
T 3ju7_A 79 KYALMPSFTFPATPLAAIWC---GLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVV---PYATFGSWMNLEEYEELE 152 (377)
T ss_dssp CEEEEESSSCTHHHHHHHHT---TCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEEC---CBCGGGBCCCCHHHHHHH
T ss_pred CEEEECCCCcHHHHHHHHHc---CCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEE---EECCCCCccCHHHHHHHH
Confidence 99999999999988777655 99999999884 6789999999998 667 99887 566799999999999999
Q ss_pred HhcCCEEEEecccccccccccCCCC---CccEEEec--cccccCCCCcEEEEEec-CCCCcccceecCCCc------ccc
Q psy15216 163 RSKGVIFHCDAAQAVGKIDINIQNY---KVDLMSFS--AHKIYGPKGIGALYIRR-NPRTRIEAQIHGGGH------EYG 230 (2602)
Q Consensus 163 ~~~g~~livD~a~a~g~~~~dl~~~---~~D~~~~S--~~K~~Gp~G~G~l~~~~-~~~~~l~~~~~g~~~------~~~ 230 (2602)
+ ||+++|+|++|++|... +.... ..|+.++| .||.+++...|+++.++ ++.++++++...+.. ..+
T Consensus 153 ~-~~~~vi~D~a~a~g~~~-~~~~~g~~~~d~~~~S~~~~K~l~~g~gG~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g 230 (377)
T 3ju7_A 153 K-KGVPVVVDAAPGFGLMN-GGMHYGQDFSGMIIYSFHATKPFGIGEGGLIYSKNEEDIQRIKRMGNFGFDTNRECTMMG 230 (377)
T ss_dssp H-TTCCBEEECTTCTTCEE-TTEETTTTCSSEEEEECBTTSSSCCBSCEEEEESCHHHHHHHHHHTBTTBCTTSCBCSSC
T ss_pred h-cCCEEEEECCCccCCeE-CCEeccCCCCcEEEEECCCCCcCCCCCcEEEEECCHHHHHHHHHHHhcCCCCCCceeecc
Confidence 9 99999999999988642 22222 13555555 57977753356776653 344555544332211 111
Q ss_pred ccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceE--EeCCCCC-CCCceEEEEEcc-cChhHH
Q psy15216 231 LRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIY--INGDMNN-RIPHNLNISFNF-IEGESL 306 (2602)
Q Consensus 231 ~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~--l~~~~~~-~~~~~~~~~~~~-~~~~~~ 306 (2602)
+..+..++.+.+++ .. .+.++...++.+++++++.+.|.+ .+++. +...... ..+..+.+.++. .+.+++
T Consensus 231 ~~~~~~~~~aa~~~-~~----l~~l~~~~~~~~~~~~~~~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 304 (377)
T 3ju7_A 231 FNCKMSEYAAAIGI-AT----MKKWDDKLKERTRISEWYKQLLQS-NGLMKKGWQLQKTEAVIQQFMPILCPEEVRNKQV 304 (377)
T ss_dssp CBCCCCHHHHHHHH-HH----HHTHHHHHHHHHHHHHHHHHHHHH-TTTTTTTCBCCCCSCBCCSSEEEECCTTSCHHHH
T ss_pred ccCCCCHHHHHHHH-HH----HHHHHHHHHHHHHHHHHHHHHhcC-CCCccccccCCCCCcceEEEEEEEeCChhhHHHH
Confidence 12222222222221 12 245677888888999999999977 55432 1111111 122233444443 237788
Q ss_pred HHHh--CCeEEcccc--cCCCCCCChHHH---HHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 307 LMAI--KDIAVSSGS--ACTSASLEPSYV---LRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 307 ~~~L--~gI~v~~g~--~~~~~~~~~~~~---~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
...| +||.++.+. .|. .++.+. ...++..++...+.||++++..+|++|++++++.|++.
T Consensus 305 ~~~L~~~gI~~~~~~~~~~~---~~~~~~~~~~~~~p~~~~~~~~~l~lp~~~~~t~~di~~v~~~l~~~ 371 (377)
T 3ju7_A 305 IEDLKKQKIEARLYFSPSCH---QQVLFRNYKSTDLTRTNKIAKRIVSLPLWEGMTKEIVEQIVICLGQK 371 (377)
T ss_dssp HHHHHTTTBCCBCTTSSCGG---GSGGGTTSCBSCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHTC-
T ss_pred HHHHHHCCCceecccCCccc---cchhhhcCCCCCCHHHHHHHhCEEECCCCCCCCHHHHHHHHHHHHHH
Confidence 8888 799887664 222 222221 11122333344578999999999999999999999863
|
| >1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=6.3e-21 Score=248.98 Aligned_cols=330 Identities=15% Similarity=0.076 Sum_probs=228.5
Q ss_pred CCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCE
Q psy15216 1405 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKH 1484 (2602)
Q Consensus 1405 ~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~ 1484 (2602)
.++.+++++.+.++..+..+ .....++|+.+++++|.+ ++++++|+|+|+++++.++. +++||+
T Consensus 18 ~~~~~~~a~~~~~~~~~~~~-----------~~~~~~l~~~la~~~~~~--~~~~~~~gt~al~~~~~~~~---~~~gd~ 81 (393)
T 1mdo_A 18 MGAEELAAVKTVLDSGWITT-----------GPKNQELEAAFCRLTGNQ--YAVAVSSATAGMHIALMALG---IGEGDE 81 (393)
T ss_dssp CCHHHHHHHHHHHHHTCCSS-----------SHHHHHHHHHHHHHHCCS--EEEEESCHHHHHHHHHHHTT---CCTTCE
T ss_pred CCHHHHHHHHHHHhcCCcCC-----------ChHHHHHHHHHHHHhCCC--cEEEecChHHHHHHHHHHcC---CCCCCE
Confidence 45778899988887632211 134678999999999975 79999999999999999982 279999
Q ss_pred EEEcCCCCcchHHHHHHHHhCCcEEEEeccCCC-CCcChhHHHhhccCCceEEEEeccccccccccChHHHHHHhhhcCC
Q psy15216 1485 IITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN-GLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGV 1563 (2602)
Q Consensus 1485 Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~-~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~~ia~~~gi 1563 (2602)
|++++++|+++...+... |++++.++.+++ +.+|++++++++++++++|++++ |||.+.|+++|.++|++||+
T Consensus 82 Vl~~~~~~~~~~~~~~~~---g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~~~~---~~G~~~~~~~i~~l~~~~~~ 155 (393)
T 1mdo_A 82 VITPSMTWVSTLNMIVLL---GANPVMVDVDRDTLMVTPEHIEAAITPQTKAIIPVH---YAGAPADLDAIYALGERYGI 155 (393)
T ss_dssp EEEESSSCHHHHHHHHHT---TCEEEEECBCTTTCCBCHHHHHHHCCTTEEEECCBC---GGGCCCCHHHHHHHHHHHTC
T ss_pred EEeCCCccHhHHHHHHHC---CCEEEEEeccCCcCCCCHHHHHHhcCCCceEEEEeC---CCCCcCCHHHHHHHHHHcCC
Confidence 999999999987766544 999999998864 67999999999999999988865 69999999999999999999
Q ss_pred EEEEecccccCcccccCCCCC-ccEEEEccc--cccCCCceEEEEEe-cCCCCccccccccCCc-----------cccC-
Q psy15216 1564 IFHCDAAQAVGKIDINIQNYK-VDLMSFSAH--KIYGPKGIGALYIR-RNPRTRIEAQIHGGGH-----------EYGL- 1627 (2602)
Q Consensus 1564 ~vivD~a~~~g~~~~~l~~~~-~D~~v~S~~--K~~gp~G~G~l~~~-~~~~~~l~~~~~g~~~-----------~~~~- 1627 (2602)
++|+|++|+.|... +...++ .|++++|+| |++++..+|+++.+ +++++.+.+....+.. +..+
T Consensus 156 ~li~D~a~~~g~~~-~~~~~~~~d~~~~S~~k~K~l~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (393)
T 1mdo_A 156 PVIEDAAHATGTSY-KGRHIGARGTAIFSFHAIKNITCAEGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAE 234 (393)
T ss_dssp CBCEECTTCTTCEE-TTEETTSSSEEEEECCTTSSSCSSSCEEEEESCHHHHHHHHHHTBTTEECC-----------CCE
T ss_pred eEEEECccccCCeE-CCeecCCCCeEEEeCCCCCccccccceEEEeCCHHHHHHHHHHHhcCCcccchhhhccccccccc
Confidence 99999999987543 222344 899999999 75554336888886 5555555443222211 0111
Q ss_pred --CCCC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCC---CCCCceEEEEEe----cC
Q psy15216 1628 --RSGT-LATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMN---NRIPHNLNISFN----FI 1697 (2602)
Q Consensus 1628 --~~gt-~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~---~~~~~~~~~~~~----~~ 1697 (2602)
..|+ .....+.+. .++... ..+++..++.+++++++.+.|.+ .+ +.+...+. ...+....+.++ +.
T Consensus 235 ~~~~g~~~~~~~~~~a-~~~~~l-~~~~~~~~~~~~~~~~l~~~L~~-~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 310 (393)
T 1mdo_A 235 VLAPGYKYNLPDLNAA-IALAQL-QKLDALNARRAAIAAQYHQAMAD-LP-FQPLSLPSWEHIHAWHLFIIRVDEARCGI 310 (393)
T ss_dssp ESSCCCBCCCCHHHHH-HHHHHH-HTHHHHHHHHHHHHHHHHHHHHT-SS-CEECCCCSSCEECCCSCEEEECCHHHHSS
T ss_pred ccccCccCCCCHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHhc-CC-cccccCCCCCCCceeEEEEEEeccccccc
Confidence 1222 111222211 222222 34567777888899999999987 44 66653321 112334455555 34
Q ss_pred CcHHHHHhc--CCEEEccccccCCCCCChhHHHHHc---CCC--ccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1698 EGESLLMAI--KDIAVSSGSACTSASLEPSYVLRAL---GCN--DELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1698 ~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~---~~~--~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
+..++...| +||.++++..|... .+.+.. .+ ... .....+.+|++++.++|.+|+++++++|++
T Consensus 311 ~~~~l~~~l~~~gi~v~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~ 381 (393)
T 1mdo_A 311 TRDALMASLKTKGIGTGLHFRAAHT--QKYYRE-RFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQ 381 (393)
T ss_dssp CHHHHHHHHHHTTBCCBCCCCCGGG--SHHHHH-HSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCcccccCcccc--Chhhhc-cCCccCChhHHHHHhCEEEecCCCCCCHHHHHHHHHHHHH
Confidence 566777666 89999887765321 111111 00 000 001236899999999999999999999996
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} | Back alignment and structure |
|---|
Probab=99.86 E-value=6.6e-21 Score=253.32 Aligned_cols=322 Identities=16% Similarity=0.104 Sum_probs=228.5
Q ss_pred CCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHh----CCCCCcEEEeCCHHHHHHHHHHhhhhhh
Q psy15216 1403 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI----YADPREIIWTSGATESNNLAIKGAAHFY 1478 (2602)
Q Consensus 1403 ~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~----g~~~~~iv~t~gaT~al~~al~~l~~~~ 1478 (2602)
.+.++.+.+++.+.++....++....|. ......++|+++++++ ++++++|++|+|+++++..+ .++.
T Consensus 81 ~~~~~~v~~a~~~~~~~~~~~~~~~~y~----~~~g~~~lr~~ia~~~~~g~~~~~~~i~~t~G~~~al~~~-~~l~--- 152 (449)
T 3qgu_A 81 EPLPKYIADAMAKAAAGLATREGYSGYG----AEQGQGALREAVASTFYGHAGRAADEIFISDGSKCDIARI-QMMF--- 152 (449)
T ss_dssp CCCCHHHHHHHHHHHHGGGGSCCCCCST----TTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCHHHHHHHH-HHHH---
T ss_pred CCCCHHHHHHHHHHHHhhccccCCCCCC----CCCCcHHHHHHHHHHHHcCCCCCHHHEEEccCHHHHHHHH-HHHh---
Confidence 4678899999999887543222211111 1123578899999998 77888999999999999998 7776
Q ss_pred ccCCCEEEEcCCCCcchHHHHHHHHhCCcE----------EEEeccCCC--CCcChhHHHhhccCCceEEEEeccccccc
Q psy15216 1479 KKRGKHIITVQTEHKSVLDSIRKLENDGFR----------VTYLKPKNN--GLITLSQLEEKICSDTILVSVMLVNNEIG 1546 (2602)
Q Consensus 1479 ~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~----------v~~v~~~~~--~~id~d~l~~~i~~~t~lv~l~~~~n~tG 1546 (2602)
++||+|++++|.|+++...+..+ |++ ++.++.+.+ ...|++++ +++++|++++|+||||
T Consensus 153 -~~gd~Vl~~~p~~~~~~~~~~~~---g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~l~~p~NPtG 223 (449)
T 3qgu_A 153 -GSKPTVAVQDPSYPVYVDTSVMM---GMTGDHNGTGFDGIEYMVCNPDNHFFPDLSKA-----KRTDIIFFCSPNNPTG 223 (449)
T ss_dssp -CSSSCEEEEESCCTHHHHHHHHH---TCSCCBCSSSBTTEEEEECCGGGTTCCCGGGC-----CCCSEEEEESSCTTTC
T ss_pred -CCCCEEEEcCCCChhHHHHHHHc---CCcccccccccceeEEEecccccCCcCChhHc-----CCCCEEEEeCCCCCCC
Confidence 79999999999999998888777 777 888887754 33444322 7899999999999999
Q ss_pred cccC---hHHHHHHhhhcCCEEEEecccccC----cccccCCC----CCccEEEEccccccCCCc--eEEEEEecCCCCc
Q psy15216 1547 VIQP---ILEIGELCRSKGVIFHCDAAQAVG----KIDINIQN----YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTR 1613 (2602)
Q Consensus 1547 ~~~~---l~~I~~ia~~~gi~vivD~a~~~g----~~~~~l~~----~~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~ 1613 (2602)
.++| +++|+++|++||+++|+|++|+.. ..+.++.. .+.++++.|+||.+|++| +||+++++++++.
T Consensus 224 ~~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~ 303 (449)
T 3qgu_A 224 AAATRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPGADEVAIETCSFSKYAGFTGVRLGWTVVPKALKYA 303 (449)
T ss_dssp CCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECSGGGTCTTCCCEEEECCTTCBCT
T ss_pred CcCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHhhccCCCCcEEEEecchhhcCCccceeEEEecCHHHHhh
Confidence 9998 778888899999999999999752 22222222 245688999999888777 8999999887653
Q ss_pred -cccccccCCccccCCCCCcchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEE
Q psy15216 1614 -IEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRL-ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLN 1691 (2602)
Q Consensus 1614 -l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~-~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~ 1691 (2602)
.......+.........+.+.+.+.+..+++.. ....+++.++++.++++++.+.|.+ . ++.+..+.. .....
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~---~~~~~ 378 (449)
T 3qgu_A 304 NGEPVHADWNRVMTTCFNGASNIVQAGGLACLQPEGLKEMNAMIKFYKENAQILKTTFTE-M-GFSVYGGDD---APYIW 378 (449)
T ss_dssp TSCBHHHHHHHHHHHSCCCCCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHH-T-TCCEEESSS---SSEEE
T ss_pred hhhhHHHHHHHHhhcccCCCCHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHH-C-CCeeeCCCC---eeEEE
Confidence 000000000001112235566666666666653 3356788899999999999999988 3 666554322 22333
Q ss_pred EEEecCCcHHHHHhc---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1692 ISFNFIEGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1692 ~~~~~~~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
+.++..+..++...| +||.+++|..|... ..+++|||+. .+.+++++++++|++.
T Consensus 379 ~~~~~~~~~~~~~~l~~~~gI~v~pg~~f~~~-----------------~~~~iRis~~--~~~e~i~~~l~~l~~~ 436 (449)
T 3qgu_A 379 VGFPGKPSWDVFAEILERCNIVTTPGSGYGPA-----------------GEGFVRASAF--GSRENILEAVRRFKEA 436 (449)
T ss_dssp EECTTSCHHHHHHHHHHHHCEECEEGGGGCGG-----------------GTTEEEEECC--SCHHHHHHHHHHHHHH
T ss_pred EECCCCCHHHHHHHHHHHCCEEEecchHhCCC-----------------CCCeEEEEec--CCHHHHHHHHHHHHHH
Confidence 444434556666555 49999999887542 1389999965 4999999999999973
|
| >1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-20 Score=244.54 Aligned_cols=308 Identities=13% Similarity=0.091 Sum_probs=219.5
Q ss_pred cchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHHHH-HhCCc
Q psy15216 33 HIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDGF 111 (2602)
Q Consensus 33 ~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~-~~~G~ 111 (2602)
|.+++...+...++++++++++|.+ +.+++++| ++|+++++.++. ++||+|+++.++|+++...+... +..|+
T Consensus 44 ~~~~~~~~~~~~~l~~~la~~~~~~-~~i~~~sG-t~a~~~~~~~~~----~~g~~vl~~~~~~~~~~~~~~~~~~~~g~ 117 (386)
T 1cs1_A 44 HDYSRRGNPTRDVVQRALAELEGGA-GAVLTNTG-MSAIHLVTTVFL----KPGDLLVAPHDCYGGSYRLFDSLAKRGCY 117 (386)
T ss_dssp CSBTTTCCHHHHHHHHHHHHHHTCS-EEEEESSH-HHHHHHHHHHHC----CTTCEEEEETTCCHHHHHHHHHHHTTTSC
T ss_pred cceeCCCCccHHHHHHHHHHHhCCC-cEEEeCCH-HHHHHHHHHHHh----CCCCEEEEecCCcHhHHHHHHHHHHhcCC
Confidence 3444444567889999999999986 56666555 999999999886 79999999999999877766443 66799
Q ss_pred EEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHhcCCEEEEecccccccccccCCCCCccE
Q psy15216 112 RVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDL 191 (2602)
Q Consensus 112 ~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~~g~~livD~a~a~g~~~~dl~~~~~D~ 191 (2602)
+++.++.+ |++++++++++++++|++++++||||.+.|+++|.++|++||+++|+|++|+.+.....+ .+++|+
T Consensus 118 ~~~~~~~~-----d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~-~~~~di 191 (386)
T 1cs1_A 118 RVLFVDQG-----DEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQNPL-ALGADL 191 (386)
T ss_dssp EEEEECTT-----CHHHHHHHHHTCCSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCGG-GGTCSE
T ss_pred EEEEeCCC-----CHHHHHHhhccCCcEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccCCcc-ccCceE
Confidence 99999864 899999999999999999999999999999999999999999999999999887654333 467899
Q ss_pred EEeccccccC-CCCc--EEEEEec-CCCCcccceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy15216 192 MSFSAHKIYG-PKGI--GALYIRR-NPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQK 267 (2602)
Q Consensus 192 ~~~S~~K~~G-p~G~--G~l~~~~-~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~ 267 (2602)
+++|+||++| |.+. |++++++ ++++.+.+...++ .++.+....+++..+++ .+....++..++++
T Consensus 192 ~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~~~~~~-------~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~ 260 (386)
T 1cs1_A 192 VLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNI-------GVTGGAFDSYLLLRGLR----TLVPRMELAQRNAQ 260 (386)
T ss_dssp EEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHH-------TCBCCHHHHHHHHHHHT----THHHHHHHHHHHHH
T ss_pred EEEcCcccccCCCCceeEEEEeCcHHHHHHHHHHHHhc-------CCCCCHHHHHHHHhccc----HHHHHHHHHHHHHH
Confidence 9999999766 4442 9999986 6666665543211 23445544444434444 23445555666777
Q ss_pred HHHHHHhhccCceEEe-CCC-------------CCCCCceEEEEEcccChhHHHHHh--CCeEEcc---c------ccCC
Q psy15216 268 RLYNGLMESIEEIYIN-GDM-------------NNRIPHNLNISFNFIEGESLLMAI--KDIAVSS---G------SACT 322 (2602)
Q Consensus 268 ~l~~~L~~~~~g~~l~-~~~-------------~~~~~~~~~~~~~~~~~~~~~~~L--~gI~v~~---g------~~~~ 322 (2602)
.+.+.|.+ .+.+.-. .+. ......++.+.++.. ...+...| .||.++. | .+|.
T Consensus 261 ~l~~~l~~-~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~gi~~~~~~~g~~~sl~~~~~ 338 (386)
T 1cs1_A 261 AIVKYLQT-QPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGD-EQTLRRFLGGLSLFTLAESLGGVESLISHAA 338 (386)
T ss_dssp HHHHHHTT-CTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSC-HHHHHHHHHTCSSSEEBSCCCSSSCEEEEGG
T ss_pred HHHHHHhc-CCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECCC-HHHHHHHHHhCCcceEcccCCCcceeeeccc
Confidence 77777766 5554322 111 011234455555432 34454555 6888873 3 2222
Q ss_pred CC--CCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 323 SA--SLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 323 ~~--~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
.. ...++..+..+|+. ++++|||++.++++++++++.++|++.
T Consensus 339 ~~~~~~~~~~~~~~~g~~----~~~iRis~~~~~~~~~i~~l~~al~~~ 383 (386)
T 1cs1_A 339 TMTHAGMAPEARAAAGIS----ETLLRISTGIEDGEDLIADLENGFRAA 383 (386)
T ss_dssp GTTTTTSCHHHHHHHTCC----TTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred ccccccCCHHHHHhcCCC----CCeEEEEEccCCHHHHHHHHHHHHHHh
Confidence 11 12244556666765 389999999999999999999999853
|
| >3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.5e-20 Score=246.73 Aligned_cols=315 Identities=12% Similarity=0.133 Sum_probs=229.7
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCC
Q psy15216 1404 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK 1483 (2602)
Q Consensus 1404 ~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd 1483 (2602)
+.++.+.+++.+.++......+ .+...+.......++++++++++|.+ ..++++++++|+..++.++. ++||
T Consensus 73 ~~~p~v~~a~~~~l~~~~~~~~--~~~~~~g~~~~~~~l~~~la~~~g~~--~~i~~~sGt~a~~~~l~~~~----~~gd 144 (409)
T 3kki_A 73 ANHPLIKARLAKSLLEEQQSLF--MSASFLQNDYDKPMIEKRLAKFTGFD--ECLLSQSGWNANVGLLQTIC----QPNT 144 (409)
T ss_dssp TTCHHHHHHHHHHHHSCCCCCC--SBGGGGCSTTTSCHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHHC----CTTC
T ss_pred cCCHHHHHHHHHHHHHcCCCCC--ccccccCCcHHHHHHHHHHHHHhCCC--eEEEecchHHHHHHHHHHhc----CCCC
Confidence 4578999999998875321111 12222222345678999999999975 35666777899999999886 8999
Q ss_pred EEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccC-CceEEEEeccccccccccChHHHHHHhhhcC
Q psy15216 1484 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS-DTILVSVMLVNNEIGVIQPILEIGELCRSKG 1562 (2602)
Q Consensus 1484 ~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~-~t~lv~l~~~~n~tG~~~~l~~I~~ia~~~g 1562 (2602)
.|+++++.|+++...+... |++++.++. .|+++|++++++ ++++|++++++||||.+.|+++|.++|++||
T Consensus 145 ~Vl~~~~~~~~~~~~~~~~---g~~~~~~~~-----~d~~~le~~l~~~~~~~vi~~~~~nptG~~~~l~~l~~la~~~~ 216 (409)
T 3kki_A 145 NVYIDFFAHMSLWEGARYA---NAQAHPFMH-----NNCDHLRMLIQRHGPGIIVVDSIYSTLGTIAPLAELVNISKEFG 216 (409)
T ss_dssp EEEEETTSCHHHHHHHHHT---TCEEEEECT-----TCHHHHHHHHHHHCSCEEEEESBCTTTCCBCCHHHHHHHHHHHT
T ss_pred EEEECCCcCHHHHHHHHHc---CCeEEEecC-----CCHHHHHHHHHhcCCeEEEECCCCCCCCCcCCHHHHHHHHHHcC
Confidence 9999999999988776655 888888764 589999999985 5899999999999999999999999999999
Q ss_pred CEEEEecccccCccc---------ccCCCCCccEEEEccccccCCCceEEEEEecCCCCccccccccCCccccCCCCCcc
Q psy15216 1563 VIFHCDAAQAVGKID---------INIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLA 1633 (2602)
Q Consensus 1563 i~vivD~a~~~g~~~---------~~l~~~~~D~~v~S~~K~~gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~ 1633 (2602)
+++|+|++|+.+... .++. .++|+++.|+||.+|+.| |+++.++++++.+......+ .+ .++.+
T Consensus 217 ~~li~De~~~~g~~g~~g~~~~~~~~~~-~~~di~~~s~sK~~~~~g-g~v~~~~~~~~~~~~~~~~~----~~-~~~~~ 289 (409)
T 3kki_A 217 CALLVDESHSLGTHGPNGAGLLAELGLT-REVHFMTASLAKTFAYRA-GAIWCNNEVNRCVPFISYPA----IF-SSTLL 289 (409)
T ss_dssp CEEEEECTTTTTTSSGGGCCHHHHHTCG-GGCSEEEEESSSTTCSSC-EEEEESSSGGGTHHHHCHHH----HH-SBCCC
T ss_pred CEEEEECCccccccCCCCCcchhhcCCC-CCCCEEEeecchhhCCCc-eEEEECHHHHHHHHHhCcCc----cc-cCCCc
Confidence 999999999865431 1121 257899999999888775 99999988776654321100 01 22355
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecC-CcHHHHHhc--CCEE
Q psy15216 1634 THQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI-EGESLLMAI--KDIA 1710 (2602)
Q Consensus 1634 ~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~L--~gI~ 1710 (2602)
...++++.++++..... ++.++++.++++++.+.|.+ . ++.+.+ ...+..+.++.. +..++...| +||.
T Consensus 290 ~~~~aa~~aal~~~~~~-~~~~~~~~~~~~~l~~~L~~-~-g~~~~~-----~~~~~~~~~~~~~~~~~~~~~L~~~Gv~ 361 (409)
T 3kki_A 290 PYEAAGLETTLEIIESA-DNRRQHLDRMARKLRIGLSQ-L-GLTIRS-----ESQIIGLETGDERNTEKVRDYLESNGVF 361 (409)
T ss_dssp HHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHT-T-TCCCCC-----SSSEEEEEEESHHHHHHHHHHHHHTTEE
T ss_pred HHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHH-c-CCccCC-----CCCEEEEEeCCHHHHHHHHHHHHHCCce
Confidence 56666777778765443 67888889999999999987 3 544331 123444444432 234566555 7999
Q ss_pred EccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1711 VSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1711 v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
+++...+..+ ...+++||+++.++|++++++++++|++.
T Consensus 362 v~~~~~~~~~----------------~~~~~iRi~~~~~~t~e~i~~~~~~l~~~ 400 (409)
T 3kki_A 362 GSVFCRPATS----------------KNKNIIRLSLNSDVNDEQIAKIIEVCSDA 400 (409)
T ss_dssp CEEECTTSSC----------------TTCEEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred EeeeCCCCcC----------------CCCcEEEEEccCCCCHHHHHHHHHHHHHH
Confidence 8764432111 12378999999999999999999999974
|
| >3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6 | Back alignment and structure |
|---|
Probab=99.86 E-value=2.3e-20 Score=247.80 Aligned_cols=307 Identities=15% Similarity=0.144 Sum_probs=221.8
Q ss_pred cchhhhHHHHHHHHHHHHHHHhCCCCC---------cEEEeCCHHHHHHHHHHhcccccc---------------cCCCE
Q psy15216 33 HIYGWTAEKAIEKARNEVAQLIYADPR---------EIIWTSGATESNNLAIKGAAHFYK---------------KRGKH 88 (2602)
Q Consensus 33 ~~~~~~~~~~~~~~r~~lA~~~g~~~~---------~Iv~t~g~T~al~~~~~~l~~~~~---------------~~gd~ 88 (2602)
+..+.....+.+++.+++++++|.+.+ ..++|+|+|+|+..++.+...... .++++
T Consensus 105 ~~~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~ 184 (475)
T 3k40_A 105 WIASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLV 184 (475)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEE
T ss_pred ccCCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCeE
Confidence 444566677888899999999998643 589999999999998888743211 24579
Q ss_pred EEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccCC------ceEEEEecccCcccccccHHHHHHHH
Q psy15216 89 IITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSD------TILVSVMLVNNEIGVIQPILEIGELC 162 (2602)
Q Consensus 89 Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~~------tklv~i~~~~npTG~~~~l~~I~~la 162 (2602)
|+++..+|+++..++... |++++.+++++++ +|+++|+++|+++ +.+|++++++|+||.+.|+++|+++|
T Consensus 185 vi~s~~~H~s~~~~~~~~---g~~~~~v~~d~~~-~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~l~~I~~la 260 (475)
T 3k40_A 185 GYCSDQAHSSVERAGLLG---GVKLRSVQSENHR-MRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGPVG 260 (475)
T ss_dssp EEEETTSCHHHHHHHHHH---TCEEEEECCBTTB-CCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHH
T ss_pred EEECCCchHHHHHHHHHc---CCceEEEECCCCC-cCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCCHHHHHHHH
Confidence 999999999999888876 9999999998889 9999999999754 67899999999999999999999999
Q ss_pred HhcCCEEEEeccccccccccc-----CCCC-CccEEEecccc-ccCCCCcEEEEEecCC-C-Ccc--cc-eecCCCc---
Q psy15216 163 RSKGVIFHCDAAQAVGKIDIN-----IQNY-KVDLMSFSAHK-IYGPKGIGALYIRRNP-R-TRI--EA-QIHGGGH--- 227 (2602)
Q Consensus 163 ~~~g~~livD~a~a~g~~~~d-----l~~~-~~D~~~~S~~K-~~Gp~G~G~l~~~~~~-~-~~l--~~-~~~g~~~--- 227 (2602)
++||+++|+|++|+.+....+ +... .+|++++++|| +++|.|+|++++++.. . +.+ .+ .+.....
T Consensus 261 ~~~~~~lhvD~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~~yl~~~~~~~~ 340 (475)
T 3k40_A 261 NKHNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWLKDPSWVVNAFNVDPLYLKHDMQGSA 340 (475)
T ss_dssp HHTTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESSGGGC-------------------
T ss_pred HHhCCeEEEeHHhHHHHHhCHhhHHHhcCcccCCEEEECchhccCCCCceEEEEEeCHHHHHHHhcCCccccCCCcCCCC
Confidence 999999999999987643211 1111 36999999999 6679999999998652 2 111 11 1111000
Q ss_pred ----cccccccCcchhHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEccc-
Q psy15216 228 ----EYGLRSGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI- 301 (2602)
Q Consensus 228 ----~~~~~~gt~~~~~~~al~~al~-~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~- 301 (2602)
...+..+. + ...+++.++++ +..+++++++++..++++++.+.|.+ .++++++.++. ..++.|.++..
T Consensus 341 ~~~~~~~~~~sr-~-~~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~-~~g~~l~~~~~---~~iv~f~~~~~~ 414 (475)
T 3k40_A 341 PDYRHWQIPLGR-R-FRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVA-DSRFELAAEIN---MGLVCFRLKGSN 414 (475)
T ss_dssp --------CCCG-G-GTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-STTEEESSCCB---TTEEEEEESSCH
T ss_pred CCcccccccCCC-c-ccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc-CCCEEEecCCc---eEEEEEEeCCch
Confidence 01111111 2 23455667777 34567899999999999999999988 78999986543 24556666532
Q ss_pred -ChhHHHHHh--CCe-EEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecC-CCCCHHHHHHHHHHHHhh
Q psy15216 302 -EGESLLMAI--KDI-AVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIG-RFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 302 -~~~~~~~~L--~gI-~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~-~~~t~edid~li~~L~~~ 369 (2602)
...++.+.| +|+ .+.++... ...++|+++. +.+|++||++++++|++.
T Consensus 415 ~~~~~l~~~L~~~g~~~~~~~~~~--------------------g~~~lR~~~~~~~tt~~di~~~~~~i~~~ 467 (475)
T 3k40_A 415 ERNEALLKRINGRGHIHLVPAKIK--------------------DVYFLRMAICSRFTQSEDMEYSWKEVSAA 467 (475)
T ss_dssp HHHHHHHHHHHHHTSCBCEEEEET--------------------TEEEEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcEEEEeeEEC--------------------CEEEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 234555555 333 22222110 1268999975 567999999999999974
|
| >3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.4e-20 Score=242.65 Aligned_cols=306 Identities=14% Similarity=0.103 Sum_probs=216.6
Q ss_pred cchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHHH-HHhCCc
Q psy15216 33 HIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDGF 111 (2602)
Q Consensus 33 ~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~-~~~~G~ 111 (2602)
|.+++...+..+++++++++++|. +++++++|+++|+.+++.++. ++||+|+++.+.|+++...+.. +.+.|+
T Consensus 73 ~~y~r~~~p~~~~l~~~la~~~g~--~~~~~~~sG~~Ai~~al~~l~----~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g~ 146 (414)
T 3ndn_A 73 YVYSRYGNPTVSVFEERLRLIEGA--PAAFATASGMAAVFTSLGALL----GAGDRLVAARSLFGSCFVVCSEILPRWGV 146 (414)
T ss_dssp CCBTTTCCHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHTTC----CTTCEEEEESCCCHHHHHHHHTHHHHTTC
T ss_pred cCcCCCCChHHHHHHHHHHHHHCC--CcEEEECCHHHHHHHHHHHHh----CCCCEEEEcCCccchHHHHHHHHHHHcCc
Confidence 444444556789999999999996 478999999999999999987 8999999999999998877754 356799
Q ss_pred EEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHhcCCEEEEecccccccccccCCCCCccE
Q psy15216 112 RVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDL 191 (2602)
Q Consensus 112 ~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~~g~~livD~a~a~g~~~~dl~~~~~D~ 191 (2602)
++++++.+ |+++|+++++++|++|++++|+||||.+.|+++|+++|++||+++|+|++|+.+.....+ .+++|+
T Consensus 147 ~~~~v~~~-----d~~~l~~ai~~~t~~v~le~p~NptG~~~~l~~i~~la~~~g~~livDe~~~~~~~~~~~-~~g~di 220 (414)
T 3ndn_A 147 QTVFVDGD-----DLSQWERALSVPTQAVFFETPSNPMQSLVDIAAVTELAHAAGAKVVLDNVFATPLLQQGF-PLGVDV 220 (414)
T ss_dssp EEEEECTT-----CHHHHHHHTSSCCSEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTHHHHCCCG-GGTCSE
T ss_pred EEEEeCCC-----CHHHHHHhcCCCCeEEEEECCCCCCCccccHHHHHHHHHHcCCEEEEECCCcccccCCch-hcCCCe
Confidence 99999865 899999999999999999999999999999999999999999999999999876543222 467899
Q ss_pred EEeccccccCCCC---cEEEEEecCCCC-cccceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy15216 192 MSFSAHKIYGPKG---IGALYIRRNPRT-RIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQK 267 (2602)
Q Consensus 192 ~~~S~~K~~Gp~G---~G~l~~~~~~~~-~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~ 267 (2602)
++.|+||++|++| +|+++++++.+. .+..... ...++.+....+.+...+ +.+....++..++++
T Consensus 221 v~~S~sK~l~~~G~~~~G~vv~~~~~~~~~l~~~~~-------~~g~~~~~~~a~~~~~~l----~~l~~r~~~~~~~a~ 289 (414)
T 3ndn_A 221 VVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMR-------HTGPAMSAFNAWVLLKGL----ETLAIRVQHSNASAQ 289 (414)
T ss_dssp EEEETTTTTTCSSCCCCEEEEECHHHHTTHHHHHHH-------HHCCCCCHHHHHHHHHHG----GGHHHHHHHHHHHHH
T ss_pred EeccCCccccCCCCceEEEEEECHHHHHHHHHHHHH-------HcCCCCCHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 9999999888877 699999876554 3432211 111223333222222222 234556667778888
Q ss_pred HHHHHHhhccCceEEeCCCC---C-----------CCCceEEEEEccc------ChhHHHHHh--CCeEEcccccCCCC-
Q psy15216 268 RLYNGLMESIEEIYINGDMN---N-----------RIPHNLNISFNFI------EGESLLMAI--KDIAVSSGSACTSA- 324 (2602)
Q Consensus 268 ~l~~~L~~~~~g~~l~~~~~---~-----------~~~~~~~~~~~~~------~~~~~~~~L--~gI~v~~g~~~~~~- 324 (2602)
++.+.|.+ .|++.....+. . ....++.|.+++. ....++..+ .++.++.|..++..
T Consensus 290 ~l~~~L~~-~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~s~G~~~sl~~ 368 (414)
T 3ndn_A 290 RIAEFLNG-HPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPEDVAKQRAFEVLDKMRLIDISNNLGDAKSLVT 368 (414)
T ss_dssp HHHHHHHT-CTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGGGHHHHHHHHHHHCSSSEECSCCSCSSCEEE
T ss_pred HHHHHHhc-CCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCccccHHHHHHHHHhCccceEcCCCCCCCceee
Confidence 88888877 57764332111 0 0133455566542 245677777 46677777654321
Q ss_pred -------CCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHH
Q psy15216 325 -------SLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLL 366 (2602)
Q Consensus 325 -------~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L 366 (2602)
...+.......|+. +++||+|+|....++.++.+.++|
T Consensus 369 ~p~~~~~~~~~~~~~~~~g~~----~~~iRlsvG~e~~~dli~dl~~al 413 (414)
T 3ndn_A 369 HPATTTHRAMGPEGRAAIGLG----DGVVRISVGLEDTDDLIADIDRAL 413 (414)
T ss_dssp CGGGTTTCTTHHHHHHHTTCC----TTEEEEECCSSCHHHHHHHHHHHH
T ss_pred CccccccccCCHHHHHhcCCC----CCeEEEEeCcCCHHHHHHHHHHhh
Confidence 11233344556766 389999999755544444444443
|
| >3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B | Back alignment and structure |
|---|
Probab=99.86 E-value=4.6e-21 Score=249.33 Aligned_cols=299 Identities=14% Similarity=0.113 Sum_probs=202.7
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHHHH-HhCCcEEEEeccC
Q psy15216 41 KAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDGFRVTYLKPK 119 (2602)
Q Consensus 41 ~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~-~~~G~~v~~v~~~ 119 (2602)
+...++|+.+++++|.+ +.+++++| ++|+++++. +. ++||+|+++.+.|+++...+..+ +..|++++.++.+
T Consensus 67 p~~~~l~~~la~~~g~~-~~i~~~sG-~~ai~~~~~-l~----~~gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~ 139 (403)
T 3cog_A 67 PTRNCLEKAVAALDGAK-YCLAFASG-LAATVTITH-LL----KAGDQIICMDDVYGGTNRYFRQVASEFGLKISFVDCS 139 (403)
T ss_dssp HHHHHHHHHHHHHHTCS-EEEEESCH-HHHHHHHHT-TS----CTTCEEEEESSCCHHHHHHHHHTGGGGTCEEEEECTT
T ss_pred chHHHHHHHHHHHhCCC-cEEEECCH-HHHHHHHHH-Hh----CCCCEEEEeCCCcchHHHHHHHHHHHcCCEEEEECCC
Confidence 46788999999999986 55666555 699999988 65 79999999999999877766533 5679999999865
Q ss_pred CCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHhcC-CEEEEecccccccccccCCCCCccEEEecccc
Q psy15216 120 NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKG-VIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK 198 (2602)
Q Consensus 120 ~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~~g-~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K 198 (2602)
|+++++++++++|++|++++|+||||.+.|+++|+++|+++| +++|+|++|+.+.....+. +++|+++.|+||
T Consensus 140 -----d~~~l~~~i~~~t~~v~~~~p~nptG~~~~l~~i~~la~~~g~~~livD~~~~~~~~~~~~~-~~~div~~S~sK 213 (403)
T 3cog_A 140 -----KIKLLEAAITPETKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMSPYFQRPLA-LGADISMYSATK 213 (403)
T ss_dssp -----SHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHTSSSCCEEEEECTTTCTTTCCTTT-TTCSEEEEETTT
T ss_pred -----CHHHHHHhcCcCCeEEEEECCCCCCCeeeCHHHHHHHHHHcCCCEEEEECCCcccccCCccc-cCCeEEEEcChh
Confidence 899999999999999999999999999999999999999999 9999999998875322232 578999999999
Q ss_pred ccC-CCC--cEEEEEe-cCCCCcccceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Q psy15216 199 IYG-PKG--IGALYIR-RNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLM 274 (2602)
Q Consensus 199 ~~G-p~G--~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~ 274 (2602)
++| +.| +|+++++ +++.+.+.+...++ .++++....+++..+++.... ..++..+++..+.+.+.
T Consensus 214 ~~~g~~~~~~G~v~~~~~~l~~~l~~~~~~~-------g~~~~~~~~~~~~~~l~~l~~----r~~~~~~n~~~l~~~l~ 282 (403)
T 3cog_A 214 YMNGHSDVVMGLVSVNCESLHNRLRFLQNSL-------GAVPSPIDCYLCNRGLKTLHV----RMEKHFKNGMAVAQFLE 282 (403)
T ss_dssp TTTCSSCCCCEEEEECCHHHHHHHHHHHHHH-------CCCCCHHHHHHHHHHHTTHHH----HHHHHHHHHHHHHHHHH
T ss_pred hccCCCCCeEEEEEECcHHHHHHHHHHHHhc-------CCCCCHHHHHHHHhhhhHHHH----HHHHHHHHHHHHHHHHh
Confidence 665 554 4999985 56656665443211 223455555444455553322 23333444444444444
Q ss_pred hc-------------cCceEEeCCCCCCCCceEEEEEccc--ChhHHHHHhCCeEEc---ccc------cCCCCC--CCh
Q psy15216 275 ES-------------IEEIYINGDMNNRIPHNLNISFNFI--EGESLLMAIKDIAVS---SGS------ACTSAS--LEP 328 (2602)
Q Consensus 275 ~~-------------~~g~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~L~gI~v~---~g~------~~~~~~--~~~ 328 (2602)
+. .|++.+..+.......++.+.++.. +...++.. .+|.++ .|. +|.... ..+
T Consensus 283 ~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~l~~-~~i~~~~~s~G~~~sl~~~p~~~~~~~~~ 361 (403)
T 3cog_A 283 SNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKGTLQHAEIFLKN-LKLFTLAESLGGFESLAELPAIMTHASVL 361 (403)
T ss_dssp TCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCHHHHHHHHHH-CSSSEECSCCSSSSCEEECTTTTTTTTSC
T ss_pred cCCCEEEEECCCCCCCCcHHHHHhcCCCCceEEEEEecCCHHHHHHHHHh-CCcceEccCCCCcceeeecccccccccCC
Confidence 31 1222222111111234445555432 12233333 355433 232 332211 123
Q ss_pred HHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 329 SYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 329 ~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
...+..+|++ +++||||++.++++++++++.++|++
T Consensus 362 ~~~~~~~g~~----~~~iRlSvg~e~~~d~i~~l~~al~~ 397 (403)
T 3cog_A 362 KNDRDVLGIS----DTLIRLSVGLEDEEDLLEDLDQALKA 397 (403)
T ss_dssp HHHHHHHTCC----TTEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC----cCeEEEEeCCCCHHHHHHHHHHHHHH
Confidence 4455667765 38999999999999999999999985
|
| >4eb5_C NIFU protein (NIFU-1); scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_C* | Back alignment and structure |
|---|
Probab=99.86 E-value=3.3e-22 Score=211.70 Aligned_cols=92 Identities=54% Similarity=0.955 Sum_probs=85.9
Q ss_pred hhhHhhhhcccCCCCCCCCCCCCCcceeeeeCCCCcccEEEEEEEEcCCCceEeeeeeccccchhHhhHHHHHHHHcCCC
Q psy15216 374 SYSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKTYGCGSAIASSSLVTEWVKGKT 453 (2602)
Q Consensus 374 ~y~~~~~~hy~~p~n~g~~~~~~~~~~~~~~~~~~cgd~~~~~~~~~~~~~i~~~~~~~~gc~~~~a~~s~~~~~~~g~~ 453 (2602)
+|+++++|||+||||+|.+++++ ++++++||+|||.|+|+|+|+ +|+|+|++|+|+||+++|||||++|++++|||
T Consensus 1 lY~e~Ildh~~nPrn~G~l~~~d---~~~~~~nP~CGD~i~l~lkv~-d~~I~D~~F~g~GCais~ASaS~mtelv~GKt 76 (153)
T 4eb5_C 1 MYSDKVFDHFQNPRNVGKIEDAD---GVGTVGNPVCGDLMTIYIKVK-DNRIEDIKFQTFGCAAAIATSSMATEMAKGKT 76 (153)
T ss_dssp -CCHHHHHHHHSCSSBSCCSSCS---EEEEEECTTTCCEEEEEEEES-SSBEEEEEEEEESCHHHHHHHHHHHHHHTTCB
T ss_pred CcHHHHHHHHhCCCCCCCCCCCC---eEEEeCCCCCCCEEEEEEEec-CCeEEEEEEEEeCcHHHHHHHHHHHHHHcCCC
Confidence 69999999999999999999887 788999999999999999995 78999999999999999999999999999999
Q ss_pred hhhhhhccccchhhhh
Q psy15216 454 LDEAMSIKNTDIAEEL 469 (2602)
Q Consensus 454 ~~e~~~i~~~~i~~~l 469 (2602)
++||..+++++++..|
T Consensus 77 leEA~~i~~~~i~~~L 92 (153)
T 4eb5_C 77 IEEALKITRDAVAEAL 92 (153)
T ss_dssp HHHHTTCCHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHh
Confidence 9999999988776554
|
| >2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ... | Back alignment and structure |
|---|
Probab=99.86 E-value=9.8e-22 Score=252.41 Aligned_cols=306 Identities=18% Similarity=0.186 Sum_probs=200.3
Q ss_pred eEEEEEcCcccEEEEEEECCeeE-EEeCCCCCccccEE-EEEecCCcEEEcHHHHhhhccCCCCchhhhhhhhCCCCCCC
Q psy15216 638 VSIGIDFGTTNSLVAIVRNNIPE-VLKDKYGYFLIPSI-VRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNI 715 (2602)
Q Consensus 638 ~vvGID~GTt~s~va~~~~~~~~-ii~~~~g~~~~PS~-v~~~~~~~~~vG~~A~~~~~~~p~~~~~~~K~~lg~~~~~~ 715 (2602)
..|+||+||+++.+++..++.|. ++++.-|....+++ +.+ .+...++|.+|+... . ...+++
T Consensus 6 ~~ivID~Gs~~~k~G~~~~~~p~~~~ps~v~~~~~~~~~~~~-~~~~~~vG~~a~~~~----~--~~~~~~--------- 69 (375)
T 2fxu_A 6 TALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGM-GQKDSYVGDEAQSKR----G--ILTLKY--------- 69 (375)
T ss_dssp CCEEEEECSSEEEEEETTCSSCSEEEECCEEEECTTTC--------CCEEHHHHHHHT----T--SEEEEC---------
T ss_pred ceEEEECCCCeEEEEECCCCCCceeeccccccccccccccCC-CCCCeEechhHhhcC----c--ccceec---------
Confidence 35899999999999998766664 44444443333321 111 123468999986541 1 111221
Q ss_pred CCCCCCeeeecCCCceEEEEeCceeCHHHHHHHHHHHHHHHHHHhhcCcc--ceEEEEEcCCCCHHHHHHHHHHH-HHcC
Q psy15216 716 NTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRI--FGAVITVPAYFNDIQRQFTKNAA-KLAG 792 (2602)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~--~~~ViTVPa~f~~~qr~~~~~Aa-~~AG 792 (2602)
|+ ..+.+.--+....+++|+.. +.++... ..++||+|++++..+|+++.+++ +.+|
T Consensus 70 -----Pi-------------~~G~i~d~d~~e~i~~~~~~---~~L~~~~~~~~vvit~p~~~~~~~r~~~~e~~fe~~g 128 (375)
T 2fxu_A 70 -----PI-------------EHGIITNWDDMEKIWHHTFY---NELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFN 128 (375)
T ss_dssp -----SE-------------ETTEECCHHHHHHHHHHHHH---TTSCCCGGGSCEEEEECTTCCHHHHHHHHHHHHHTTC
T ss_pred -----cc-------------cCCcccCHHHHHHHHHHHHH---HhcCCCCcCCcEEEEeCCCCcHHHHHHHHHHHHHhcC
Confidence 11 11222223344445555442 3344333 35999999999999999888765 7889
Q ss_pred CceEEEechhHHHHHHhhhccCcccceEEEEEeCCceEEEEEEEEECCEEEEEEEecCCCCcchHHHHHHHHHHHHHHhh
Q psy15216 793 LNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFL 872 (2602)
Q Consensus 793 l~~~~li~EPtAAAl~y~~~~~~~~~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~ 872 (2602)
++.+.+++||+|||++|+. .+.+|+|+||||||++.+ .+|. .+....+...+||+++|+.|.+++.++..
T Consensus 129 ~~~~~~~~e~~aaa~a~g~------~~~lVvDiG~gtt~v~~v--~~G~-~~~~~~~~~~~GG~~lt~~l~~~l~~~~~- 198 (375)
T 2fxu_A 129 VPAMYVAIQAVLSLYASGR------TTGIVLDSGDGVTHNVPI--YEGY-ALPHAIMRLDLAGRDLTDYLMKILTERGY- 198 (375)
T ss_dssp CSEEEEEEHHHHHHHHTTC------SSEEEEEECSSCEEEEEE--ETTE-ECGGGCEEESCCHHHHHHHHHHHHHHHTC-
T ss_pred cceEEEccchheeeeecCC------CeEEEEEcCCCceEEeEe--ECCE-EeccceEEeccCHHHHHHHHHHHHHhcCC-
Confidence 9999999999999999875 357999999999998765 4553 23333455799999999999999987621
Q ss_pred ccCCHHHHHHHHHHHHHHHHHcccc--------------cceEEEEEecCCceEEEEeCHHHH---HHHHHHH-----HH
Q psy15216 873 KKLSYKDVNILMIKSREIKELLSYQ--------------SSVKLNVKLSDKKIVNITIDMKQF---FTITQHL-----VN 930 (2602)
Q Consensus 873 ~~~~~~~~~~l~~~~e~~K~~LS~~--------------~~~~~~i~~~~~~~~~~~itr~~f---e~l~~~~-----~~ 930 (2602)
...... -...+|++|+.+... ......+++.++. .+++++++| |.+++|. ..
T Consensus 199 ~~~~~~----~~~~~e~iK~~~~~v~~~~~~e~~~~~~~~~~~~~~~lpdg~--~i~i~~erf~~~E~lf~p~~~~~~~~ 272 (375)
T 2fxu_A 199 SFVTTA----EREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQ--VITIGNERFRCPETLFQPSFIGMESA 272 (375)
T ss_dssp CCCSHH----HHHHHHHHHHHHCCCCSSHHHHHHHHHHCSTTCEEEECTTSC--EEEESTHHHHHHHTTTCGGGGTCCSC
T ss_pred CCCcHH----HHHHHHHHHHHHHhhcccHHHHHHhhcccCccCeEEECCCCC--EEEEChhheechHhhCCCccCCCCCC
Confidence 111110 113445555544211 0112334455554 467888887 4455553 24
Q ss_pred HHHHHHHHHHHHcC--CCccccceEEEecCccchHHHHHHHHhhcc--------CcccCcCCcchHhHHHHHHHhH
Q psy15216 931 RTILLSSKALMDAN--LTIKDINNVILVGGSTRMKHIHEGVSNFFK--------TTLLTSIDPDKAVVFGAAIQAN 996 (2602)
Q Consensus 931 ~~~~~i~~~l~~a~--~~~~~i~~V~LvGG~sr~P~v~~~l~~~f~--------~~~~~~~~p~~aVa~GAa~~a~ 996 (2602)
.+.++|.+.|..+. +....++.|+|+||+|++|.++++|++.++ .++..+.+|..++++||+++|.
T Consensus 273 ~i~~~i~~~i~~~~~~~~~~l~~~IvLtGG~s~~pG~~~rl~~el~~~~p~~~~v~v~~~~~p~~~~w~G~si~a~ 348 (375)
T 2fxu_A 273 GIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILAS 348 (375)
T ss_dssp CHHHHHHHHHHTSCHHHHHHHHTCEEEESGGGCSTTHHHHHHHHHHHHSCTTCCCCEECCTTTTSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCHHHHHHHHhCcEeeCCCCCCccHHHHHHHHHHHhCCCCeeEEEEcCCCCCccEEcchHHhhC
Confidence 57788888888663 223456889999999999999999998874 3455678999999999999996
|
| >2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.3e-21 Score=255.06 Aligned_cols=341 Identities=12% Similarity=0.075 Sum_probs=230.8
Q ss_pred CCCHHHHHHHHHHHhhcc-C-CCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccC
Q psy15216 1404 PIDPRVVDKMIPYLRVQF-G-NPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKR 1481 (2602)
Q Consensus 1404 ~~~~~v~eal~~~l~~~~-~-np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~ 1481 (2602)
+.++.+.+++.+.++... . +++. .+ ...+..++++.+++++|++ ++++++|+|+|++.++.++. +++
T Consensus 13 ~~~~~~~~a~~~~~~~~~~~~~~~~----~g--~~~l~~~l~~~la~~~g~~--~~i~~~~gt~al~~~~~~~~---~~~ 81 (418)
T 2c81_A 13 QHSDRTRRKIEEVFQSNRWAISGYW----TG--EESMERKFAKAFADFNGVP--YCVPTTSGSTALMLALEALG---IGE 81 (418)
T ss_dssp CCCHHHHHHHHHHHHHTCCSTTSBC----CS--SCCHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHTT---CCT
T ss_pred CCCHHHHHHHHHHHhcCCccccCcc----cC--CHHHHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHcC---CCC
Confidence 457889999999887631 1 1111 11 1235788999999999986 67888889999999999983 279
Q ss_pred CCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCC-CCCcChhHHHhhccCCceEEEEeccccccccccChHHHHHHhhh
Q psy15216 1482 GKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRS 1560 (2602)
Q Consensus 1482 gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~-~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~~ia~~ 1560 (2602)
||+|+++.++|+++...+... |++++.++.++ ++.+|+++|+++++++|++|+++ ||||...|+++|.++|++
T Consensus 82 gd~Vl~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~~~---~~~G~~~~~~~i~~~~~~ 155 (418)
T 2c81_A 82 GDEVIVPSLTWIATATAVLNV---NALPVFVDVEADTYCIDPQLIKSAITDKTKAIIPV---HLFGSMANMDEINEIAQE 155 (418)
T ss_dssp TCEEEEESSSCTHHHHHHHHT---TCEEEEECBCTTTCSBCHHHHGGGCCTTEEEECCB---CCTTCCCCHHHHHHHHHH
T ss_pred cCEEEECCCccHhHHHHHHHc---CCEEEEEecCCCCCCcCHHHHHHhhCCCCeEEEEe---CCcCCcccHHHHHHHHHH
Confidence 999999999999998776654 99999999886 67899999999999999988875 479999999999999999
Q ss_pred cCCEEEEecccccCcc-c-ccCCCCCccEEEEcc--ccccCCCceEEEEEe-cCCCCccccccccCCccc--------cC
Q psy15216 1561 KGVIFHCDAAQAVGKI-D-INIQNYKVDLMSFSA--HKIYGPKGIGALYIR-RNPRTRIEAQIHGGGHEY--------GL 1627 (2602)
Q Consensus 1561 ~gi~vivD~a~~~g~~-~-~~l~~~~~D~~v~S~--~K~~gp~G~G~l~~~-~~~~~~l~~~~~g~~~~~--------~~ 1627 (2602)
||+++|+|++|+.+.. . ..+..+ .|+.++|+ ||++|+..+|+++.+ +++++.+.+...++.... .+
T Consensus 156 ~~~~li~D~a~~~~~~~~~~~~~~~-~~~~~~s~s~~K~~~~g~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (418)
T 2c81_A 156 HNLFVIEDCAQSHGSVWNNQRAGTI-GDIGAFSCQQGKVLTAGEGGIIVTKNPRLFELIQQLRADSRVYCDDSSELMHGD 234 (418)
T ss_dssp TTCEEEEECTTCTTCEETTEETTSS-SSEEEEECCTTSSSCSSSCEEEEESCHHHHHHHHHHHBTTEEECSCGGGCCTTC
T ss_pred CCCEEEEECcccccCccCCEecccc-cceEEEeccCCcccCCCCeEEEEECCHHHHHHHHHHHHhCccccccccccccch
Confidence 9999999999998763 1 112222 35666666 998777336888885 455555544332221110 11
Q ss_pred C--CCCcchhH----HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCC---CCCceEEEEEe--
Q psy15216 1628 R--SGTLATHQ----IVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNN---RIPHNLNISFN-- 1695 (2602)
Q Consensus 1628 ~--~gt~~~~~----~~al~~aL~-~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~---~~~~~~~~~~~-- 1695 (2602)
. .+++...+ +..+.+++. .....+++..++.+++++++.+.|.+ ++++.+..++.. ..+....+.++
T Consensus 235 ~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (418)
T 2c81_A 235 MQLVKKGDIQGSNYCLSEFQSAILLDQLQELDDKNAIREKNAMFLNDALSK-IDGIKVMKRPPQVSRQTYYGYVFRFDPV 313 (418)
T ss_dssp BSEEECCSSCCCBCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTT-STTEEECCCCTTEEECCCSEEEEEECGG
T ss_pred hhccccccccCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCcccCCCCCCCcccccEEEEEEEccc
Confidence 1 11111110 111222232 11234677788888899999999987 789988754332 12234446665
Q ss_pred ---cCCcHHHHHhc--C-CEE---EccccccCCCCCChhHHH-------------------HHcCCCccccCCeEEEecC
Q psy15216 1696 ---FIEGESLLMAI--K-DIA---VSSGSACTSASLEPSYVL-------------------RALGCNDELAHSSIRFTIG 1747 (2602)
Q Consensus 1696 ---~~~~~~~~~~L--~-gI~---v~~g~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~iRls~~ 1747 (2602)
+.+..++...| + ||. ++++..+.. ..+.+.. ..++..+....+.|||+++
T Consensus 314 ~~~~~~~~~l~~~L~~~~gI~~~~v~~~~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~ 391 (418)
T 2c81_A 314 KFGGLNADQFCEILREKLNMGTFYLHPPYLPVH--KNPLFCPWTKNRYLKSVRKTEAYWRGLHYPVSERASGQSIVIHHA 391 (418)
T ss_dssp GTTTCCHHHHHHHHHHHHTCCTTTEECCCCCGG--GCTTCCGGGCTTSCHHHHCCHHHHHTCCCHHHHHHHHHEEEEEGG
T ss_pred cccccCHHHHHHHHHHcCCCCcccccccccccc--cCchhcccccccccccccccccccccCCChHHHHHHhCEEEecCC
Confidence 34567777777 5 999 887763311 1111100 0001111112368999999
Q ss_pred CCC-CHHHHHHHHHHHHHh
Q psy15216 1748 RFT-TEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1748 ~~~-t~edid~li~~L~~~ 1765 (2602)
.++ |.+||++++++|++.
T Consensus 392 ~~~gt~edi~~~~~~l~~~ 410 (418)
T 2c81_A 392 ILLAEPSHLSLLVDAVAEL 410 (418)
T ss_dssp GGGSCHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHH
Confidence 999 999999999999973
|
| >3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=9.3e-21 Score=245.96 Aligned_cols=303 Identities=14% Similarity=0.117 Sum_probs=211.8
Q ss_pred cchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHHH-HHhCCc
Q psy15216 33 HIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDGF 111 (2602)
Q Consensus 33 ~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~-~~~~G~ 111 (2602)
+.+++...+..+++++++++++|.+ +.++++|+++|+.+++.++. ++||+|+++.+.|+++...+.. ++..|+
T Consensus 51 ~~y~~~~~~~~~~l~~~la~~~g~~--~~i~~~sG~~ai~~~~~~~~----~~gd~vl~~~~~y~~~~~~~~~~~~~~g~ 124 (389)
T 3acz_A 51 HIYSRLGNPTVEQFEEMVCSIEGAA--GSAAFGSGMGAISSSTLAFL----QKGDHLIAGDTLYGCTVSLFTHWLPRFGI 124 (389)
T ss_dssp CCBTTTCCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHTTTC----CTTCEEEEESSCCHHHHHHHHHHHHHTTC
T ss_pred cccCCCCChHHHHHHHHHHHHhCCC--eEEEeCCHHHHHHHHHHHHh----CCCCEEEEeCCCchHHHHHHHHHHHHcCC
Confidence 3344444567889999999999986 66677778899999999886 7999999999999998777654 466799
Q ss_pred EEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHhcCCEEEEecccccccc--cccCCCCCc
Q psy15216 112 RVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKI--DINIQNYKV 189 (2602)
Q Consensus 112 ~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~~g~~livD~a~a~g~~--~~dl~~~~~ 189 (2602)
+++.++. .|+++++++++++|++|++++|+||||.+.|+++|.++|++||+++|+|++|+.+.. +++ +++
T Consensus 125 ~~~~v~~-----~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~livD~~~~~~~~~~~~~---~~~ 196 (389)
T 3acz_A 125 EVDLIDT-----SDVEKVKAAWKPNTKMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATFTSPCFLKPLE---LGA 196 (389)
T ss_dssp EEEEECT-----TCHHHHHHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCTTTCCGGG---TTC
T ss_pred EEEEECC-----CCHHHHHHhcCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCccccccCccc---cCC
Confidence 9999986 389999999999999999999999999999999999999999999999999987653 443 578
Q ss_pred cEEEeccccccC-CCC--cEEEEEec-CCCCcccceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy15216 190 DLMSFSAHKIYG-PKG--IGALYIRR-NPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFL 265 (2602)
Q Consensus 190 D~~~~S~~K~~G-p~G--~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l 265 (2602)
|+++.|+||++| +.+ .|++++++ ++++.+.+.... ..++.+....+++..+++. +....++..++
T Consensus 197 di~~~S~sK~~~~~~~~~~G~v~~~~~~~~~~l~~~~~~-------~g~~~~~~~~~~~~~~l~~----l~~r~~~~~~~ 265 (389)
T 3acz_A 197 DIALHSVSKYINGHGDVIGGVSSAKTAEDIATIKFYRKD-------AGSLMAPMDAFLCARGMKT----LPIRMQIHMEN 265 (389)
T ss_dssp SEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHH-------HCCCCCHHHHHHHHHHHTT----HHHHHHHHHHH
T ss_pred eEEEECChhhccCCCCceeEEEEECcHHHHHHHHHHHHh-------cCCCCCHHHHHHHHcCccH----HHHHHHHHHHH
Confidence 999999999665 444 49999998 777666543311 1223333333333344442 23334445555
Q ss_pred HHHHHHHHhhccCceEEe-CC--CC-----------CCCCceEEEEEcccChhHHHHHh--CCeEEcc---c------cc
Q psy15216 266 QKRLYNGLMESIEEIYIN-GD--MN-----------NRIPHNLNISFNFIEGESLLMAI--KDIAVSS---G------SA 320 (2602)
Q Consensus 266 ~~~l~~~L~~~~~g~~l~-~~--~~-----------~~~~~~~~~~~~~~~~~~~~~~L--~gI~v~~---g------~~ 320 (2602)
+..+.+.+.+ .+.+.-+ .+ .. .....++.|.+++ ..+....+ .++.++. | .+
T Consensus 266 ~~~l~~~l~~-~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~~l~~--~~~~~~~l~~~~i~~~~~s~G~~~sl~~~ 342 (389)
T 3acz_A 266 GLKVAKFLEQ-HEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMKS--FEAAKKLMEHLKVCTLAVSLGCVDTLIEH 342 (389)
T ss_dssp HHHHHHHHHH-CTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESS--HHHHHHHHTTCSSSEEBSCCCCSSCEEEC
T ss_pred HHHHHHHHHc-CCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEEEECC--HHHHHHHHHhCCCcEECcCCCCcccEeeC
Confidence 6666666655 3333211 11 00 1123445555543 33333333 4666655 4 55
Q ss_pred CCCCC--CChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHH
Q psy15216 321 CTSAS--LEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK 367 (2602)
Q Consensus 321 ~~~~~--~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~ 367 (2602)
|.... ..+...+..+|++ +++||+|++.+++++.++.+.++|+
T Consensus 343 ~~~~~~~~~~~~~~~~~g~~----~~~iRlsvg~~~~~~li~~l~~al~ 387 (389)
T 3acz_A 343 PASMTHAAVPENIMRKQGIT----PELVRISVGIENVDDIIADLKQALE 387 (389)
T ss_dssp TTTTTTSSSCHHHHHHHTCC----TTEEEEECCSSCHHHHHHHHHHHHT
T ss_pred CcccccccCCHHHHHhcCCC----cCeEEEEeccCCHHHHHHHHHHHHh
Confidence 54331 1244555667775 3899999999988888888888775
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=8.9e-21 Score=241.57 Aligned_cols=300 Identities=16% Similarity=0.100 Sum_probs=223.6
Q ss_pred eeeeccCCC--CCCCHHHHHHHHHHHhh--ccCCCCCccchhHHHHHHHHHHHHHHHHHHhC---CCCCcEEEeCCHHHH
Q psy15216 1394 TNIVFKDAT--TPIDPRVVDKMIPYLRV--QFGNPASRNHIYGWTAEKAIEKARNEVAQLIY---ADPREIIWTSGATES 1466 (2602)
Q Consensus 1394 ~~v~L~~~~--~~~~~~v~eal~~~l~~--~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g---~~~~~iv~t~gaT~a 1466 (2602)
..++++.+. .+.++.+.+++.+.+.. ..+++.. ...++|+.++++++ +++++|++|+|++++
T Consensus 20 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~-----------~~~~lr~~la~~~~~~~~~~~~v~~~~G~~~a 88 (335)
T 1uu1_A 20 DKTYLALNENPFPFPEDLVDEVFRRLNSDALRIYYDS-----------PDEELIEKILSYLDTDFLSKNNVSVGNGADEI 88 (335)
T ss_dssp CSEEESSCCCSSCCCHHHHHHHHHTCCGGGGGSCCCS-----------SCHHHHHHHHHHHTCSSCCGGGEEEESSHHHH
T ss_pred cceECCCCCCCCCCCHHHHHHHHHHhhhhhhhcCCCC-----------chHHHHHHHHHHcCCCCCCHHHEEEcCChHHH
Confidence 456776443 35688999999887732 2223321 15689999999999 888899999999999
Q ss_pred HHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccCCceEEEEeccccccc
Q psy15216 1467 NNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIG 1546 (2602)
Q Consensus 1467 l~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG 1546 (2602)
++.++.++ ||+|+++ |+|+++...+... |++++.++.++++.+|++++ +++++|++++|+||||
T Consensus 89 l~~~~~~~-------gd~Vl~~-p~y~~~~~~~~~~---g~~~~~v~~~~~~~~d~~~l-----~~~~~v~l~~p~nptG 152 (335)
T 1uu1_A 89 IYVMMLMF-------DRSVFFP-PTYSCYRIFAKAV---GAKFLEVPLTKDLRIPEVNV-----GEGDVVFIPNPNNPTG 152 (335)
T ss_dssp HHHHHHHS-------SEEEECS-SSCHHHHHHHHHH---TCEEEECCCCTTSCCCCCCC-----CTTEEEEEESSCTTTC
T ss_pred HHHHHHHh-------CCcEEEC-CCcHHHHHHHHHc---CCeEEEeccCCCCCCCHHHc-----CCCCEEEEeCCCCCCC
Confidence 99998875 7999999 9999987766655 99999999887777888877 6799999999999999
Q ss_pred cccChHHHHHHhhhcCCEEEEecccccCc--cccc-CCCCCccEEEEccccccCCCc--eEEEEEecCCCCccccccccC
Q psy15216 1547 VIQPILEIGELCRSKGVIFHCDAAQAVGK--IDIN-IQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGG 1621 (2602)
Q Consensus 1547 ~~~~l~~I~~ia~~~gi~vivD~a~~~g~--~~~~-l~~~~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~~g~ 1621 (2602)
.++|.++|.++++.+| ++|+|++|+... ...+ +...+.++++.|+||.+|++| +||+++++++++.+.+..
T Consensus 153 ~~~~~~~l~~l~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~--- 228 (335)
T 1uu1_A 153 HVFEREEIERILKTGA-FVALDEAYYEFHGESYVDFLKKYENLAVIRTFSKAFSLAAQRVGYVVASEKFIDAYNRVR--- 228 (335)
T ss_dssp CCCCHHHHHHHHHTTC-EEEEECTTHHHHCCCCGGGGGTCSSEEEEEESTTTTTCGGGCCEEEEECHHHHHHHHHHS---
T ss_pred CCCCHHHHHHHHHhCC-EEEEECcchhhcchhHHHHhhhCCCEEEEecchhhcCCcccCeEEEEeCHHHHHHHHHhc---
Confidence 9999999999999889 999999997321 1122 233456799999999888778 799999877666554432
Q ss_pred CccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecCCcHH
Q psy15216 1622 GHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGES 1701 (2602)
Q Consensus 1622 ~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~ 1701 (2602)
...+++...+.++.++|+. ..++++..+++.++++++.+.|.+ . ++.+. ++. .....+.++..+..+
T Consensus 229 ------~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~-~~~---~~~~~~~~~~~~~~~ 295 (335)
T 1uu1_A 229 ------LPFNVSYVSQMFAKVALDH-REIFEERTKFIVEERERMKSALRE-M-GYRIT-DSR---GNFVFVFMEKEEKER 295 (335)
T ss_dssp ------CTTCSCHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHH-H-TCCBC-CCC---SSEEEEECCTHHHHH
T ss_pred ------CCCCcCHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHH-C-CcEEc-CCC---CeEEEEECCCCCHHH
Confidence 1236677777777777774 245778888889999999999987 3 55433 221 222333333223445
Q ss_pred HHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1702 LLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1702 ~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
+...| +||.++++ .+++|+|++ +.+|+++++++|++
T Consensus 296 ~~~~l~~~gi~v~~~------------------------~~~iRis~~---~~~~i~~~~~~l~~ 333 (335)
T 1uu1_A 296 LLEHLRTKNVAVRSF------------------------REGVRITIG---KREENDMILRELEV 333 (335)
T ss_dssp HHHHHHHHTEEEEEE------------------------TTEEEEECC---CHHHHHHHHHHHHC
T ss_pred HHHHHHHCCEEEEEC------------------------CCeEEEEeC---CHHHHHHHHHHHHh
Confidence 55555 79998861 178999986 57899999999975
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.1e-20 Score=246.44 Aligned_cols=295 Identities=10% Similarity=0.072 Sum_probs=212.8
Q ss_pred HHHHHHHHHHHHhCCCCCcEEEeCCHHHHHH--HHHHhccccccc--C---------CCEEEEcCCCCcccHHHHHHHHh
Q psy15216 42 AIEKARNEVAQLIYADPREIIWTSGATESNN--LAIKGAAHFYKK--R---------GKHIITVQTEHKSVLDSIRKLEN 108 (2602)
Q Consensus 42 ~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~--~~~~~l~~~~~~--~---------gd~Vlv~~~~~~s~~~~~~~~~~ 108 (2602)
...++|+++++++++++++|++|+|++++++ +++.++. . + ||+|+++.|.|+++...+...
T Consensus 71 g~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~~~l~----~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~-- 144 (423)
T 3ez1_A 71 GLPSARALFAGYLDVKAENVLVWNNSSLELQGLVLTFALL----HGVRGSTGPWLSQTPKMIVTVPGYDRHFLLLQTL-- 144 (423)
T ss_dssp CCHHHHHHHHHHTTSCGGGEEECSSCHHHHHHHHHHHHHH----TCCTTCSSCGGGGCCEEEEEESCCHHHHHHHHHH--
T ss_pred ChHHHHHHHHHHhCCChhhEEEeCCcHHHHHHHHHHHHHh----ccCCCccccccCCCCEEEEcCCCcHHHHHHHHHc--
Confidence 3578999999999999999999999999998 8888877 5 6 699999999999988877766
Q ss_pred CCcEEEEeccCCCCccChHHHHhhc--cCCceEEEE-ecccCcccccccHH---HHHHHH-HhcCCEEEEecccccccc-
Q psy15216 109 DGFRVTYLKPKNNGLITLSQLEEKI--CSDTILVSV-MLVNNEIGVIQPIL---EIGELC-RSKGVIFHCDAAQAVGKI- 180 (2602)
Q Consensus 109 ~G~~v~~v~~~~~~~ld~e~l~~~i--~~~tklv~i-~~~~npTG~~~~l~---~I~~la-~~~g~~livD~a~a~g~~- 180 (2602)
|++++.++.++++ +|+++|++++ ++++++|++ ++++||||.++|.+ +|+++| ++||+++|+|++|+....
T Consensus 145 -g~~~~~v~~~~~g-~d~~~l~~~l~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~ 222 (423)
T 3ez1_A 145 -GFELLTVDMQSDG-PDVDAVERLAGTDPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLV 222 (423)
T ss_dssp -TCEEEEEEEETTE-ECHHHHHHHHHSCTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTSSCBCC
T ss_pred -CCEEEeccCCCCC-CCHHHHHHHHhhCCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcchhhcC
Confidence 9999999987764 9999999999 578999875 58999999999977 788888 899999999999873211
Q ss_pred ------cccC-------CCCCccEEEeccccc-cCCCCcEEEEEecCCCCcccceecCCCccccccccCcchhHHHHHHH
Q psy15216 181 ------DINI-------QNYKVDLMSFSAHKI-YGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGE 246 (2602)
Q Consensus 181 ------~~dl-------~~~~~D~~~~S~~K~-~Gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~ 246 (2602)
+.++ ...+.++++.|+||. ++..++||+++++++++.+..... ....+++.....++..
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~G~r~G~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~a~~~ 295 (423)
T 3ez1_A 223 EEDRAEPVNFVVLARDAGYPDRAFVFASTSKITFAGAGLGFVASSEDNIRWLSKYLG-------AQSIGPNKVEQARHVK 295 (423)
T ss_dssp SSSCCCCCCHHHHHHHHTCTTSEEEEEESTTTSCSSSSCEEEEECHHHHHHHHHHHH-------HSCSCCCHHHHHHHHH
T ss_pred CCCCCCCcchhhhhhccCCCCeEEEEeCchhhccCCcceEEEEeCHHHHHHHHHHHh-------hhccCCCHHHHHHHHH
Confidence 1111 133567999999995 333348999999877766654321 1123455555555555
Q ss_pred HHHH----HHHhHHHHHHHHHHHHHHHHHHHhhccC----ceEEeCCCCCCCCceEEEEEcccChhHHHHHh--CCeEEc
Q psy15216 247 AFRL----ARIEMKEELKRILFLQKRLYNGLMESIE----EIYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDIAVS 316 (2602)
Q Consensus 247 al~~----~~~~~~~~~~~~~~l~~~l~~~L~~~~~----g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~v~ 316 (2602)
+++. ....+.+..+.+.+.++.+.+.|.+.++ ++.+..+.. ...+.+.++..+...+...| +||.++
T Consensus 296 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~p~~---g~~~~~~~~~~~~~~~~~~l~~~gv~v~ 372 (423)
T 3ez1_A 296 FLTEYPGGLEGLMRDHAAIIAPKFRAVDEVLRAELGEGGEYATWTLPKG---GYFISLDTAEPVADRVVKLAEAAGVSLT 372 (423)
T ss_dssp HHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSEEECCCSB---SSCEEEEESSSCHHHHHHHHHHTTEECC
T ss_pred HHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCceEEeCCCc---cEEEEEECCCCcHHHHHHHHHHCCcEEe
Confidence 5553 1234455555555666666655544222 366654432 34455666654556666655 799999
Q ss_pred c-cccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 317 S-GSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 317 ~-g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
+ |..|..+ .....+++||+++.. +++++++++++|++.
T Consensus 373 ~~g~~~~~~--------------~~~~~~~iRis~~~~-~~~~i~~~~~~l~~~ 411 (423)
T 3ez1_A 373 PAGATYPAG--------------QDPHNRNLRLAPTRP-PVEEVRTAMQVVAAC 411 (423)
T ss_dssp CTTTTSSTT--------------CCSSSCEEEECCSSS-CHHHHHHHHHHHHHH
T ss_pred cCcccccCC--------------CCCCCCeEEEEcCCC-CHHHHHHHHHHHHHH
Confidence 8 5555421 112348999999765 999999999999974
|
| >4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=8e-20 Score=243.48 Aligned_cols=308 Identities=14% Similarity=0.126 Sum_probs=222.8
Q ss_pred cchhhhHHHHHHHHHHHHHHHhCCCCC----------cEEEeCCHHHHHHHHHHhcccccc---------------cCCC
Q psy15216 33 HIYGWTAEKAIEKARNEVAQLIYADPR----------EIIWTSGATESNNLAIKGAAHFYK---------------KRGK 87 (2602)
Q Consensus 33 ~~~~~~~~~~~~~~r~~lA~~~g~~~~----------~Iv~t~g~T~al~~~~~~l~~~~~---------------~~gd 87 (2602)
+..+.....+.+++.+++++++|.+.. ..++|+|+|+|+..++.+...... .+++
T Consensus 110 ~~~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~~~ 189 (481)
T 4e1o_A 110 WASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARL 189 (481)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHTTE
T ss_pred cCCCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccccccCCe
Confidence 444566677888899999999998643 579999999999999988753211 2678
Q ss_pred EEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccCC------ceEEEEecccCcccccccHHHHHHH
Q psy15216 88 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSD------TILVSVMLVNNEIGVIQPILEIGEL 161 (2602)
Q Consensus 88 ~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~~------tklv~i~~~~npTG~~~~l~~I~~l 161 (2602)
+|+++..+|+++..++... |++++.+++++++.+|+++|+++|+++ +.+|++++++|+||.+.|+++|+++
T Consensus 190 ~v~~s~~~H~s~~~~~~~~---g~~~~~v~~~~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~l~~I~~l 266 (481)
T 4e1o_A 190 VAYASDQAHSSVEKAGLIS---LVKMKFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDCLSELGPI 266 (481)
T ss_dssp EEEEETTSCHHHHHHHHHH---TCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHH
T ss_pred EEEEcCcchHHHHHHHHhC---CCceEEEEcCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCCHHHHHHH
Confidence 9999999999999888766 999999999889999999999999754 7789999999999999999999999
Q ss_pred HHhcCCEEEEeccccccccccc-C----CCC-CccEEEecccc-ccCCCCcEEEEEecCCC--Ccc--cc-eecCCCc--
Q psy15216 162 CRSKGVIFHCDAAQAVGKIDIN-I----QNY-KVDLMSFSAHK-IYGPKGIGALYIRRNPR--TRI--EA-QIHGGGH-- 227 (2602)
Q Consensus 162 a~~~g~~livD~a~a~g~~~~d-l----~~~-~~D~~~~S~~K-~~Gp~G~G~l~~~~~~~--~~l--~~-~~~g~~~-- 227 (2602)
|++||+++|+|+||+.+....+ . ... .+|++++++|| +++|.|+|+++++++.. +.+ .+ ++.....
T Consensus 267 a~~~~~~lhvDaA~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~~yl~~~~~~~ 346 (481)
T 4e1o_A 267 CAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVNPIYLRHANSGV 346 (481)
T ss_dssp HHHHTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESBHHHHHTTTCCCCGGGCCTTTTT
T ss_pred HHHcCCeEEeehhhHHHHHhChhhHHHhcCcccCCEEEEChHHhcCCCCceEEEEEeCHHHHHHHhcCCchhccCcccCC
Confidence 9999999999999987643211 1 111 25999999999 56789999999986421 111 11 1111100
Q ss_pred -----cccccccCcchhHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEccc
Q psy15216 228 -----EYGLRSGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI 301 (2602)
Q Consensus 228 -----~~~~~~gt~~~~~~~al~~al~-~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~ 301 (2602)
..... ++.. ....++.++++ +..+++++..++..++++++.+.|.+ .|+++++.++. ..++.|.++..
T Consensus 347 ~~~~~~~~~~-~~r~-~~~l~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~-~~g~~~~~~~~---~~~v~f~~~~~ 420 (481)
T 4e1o_A 347 ATDFMHWQIP-LSRR-FRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRN-DPSFEIPAKRH---LGLVVFRLKGP 420 (481)
T ss_dssp SCCGGGGSSS-SCCC-CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CTTEECCSCCC---SSEEEEEESSC
T ss_pred CCCccccccc-CCCC-ccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeEEecCCc---eeEEEEEeCCc
Confidence 00111 1112 23455666666 34567899999999999999999988 78999876543 24555665432
Q ss_pred --ChhHHHHHh--CC-eEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecC-CCCCHHHHHHHHHHHHhh
Q psy15216 302 --EGESLLMAI--KD-IAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIG-RFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 302 --~~~~~~~~L--~g-I~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~-~~~t~edid~li~~L~~~ 369 (2602)
...++.+.| +| +.+.++... ...++|+++. +.+|++||++++++|++.
T Consensus 421 ~~~~~~l~~~L~~~g~~~~~~~~~~--------------------g~~~lR~~~~~~~tt~~di~~~~~~i~~~ 474 (481)
T 4e1o_A 421 NSLTENVLKEIAKAGRLFLIPATIQ--------------------DKLIIRFTVTSQFTTRDDILRDWNLIRDA 474 (481)
T ss_dssp HHHHHHHHHHHHHHCSSBCEEEEET--------------------TEEEEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCeEEEEeeEEC--------------------CEEEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 234555555 34 332222110 1267999976 456899999999999964
|
| >3n8e_A Stress-70 protein, mitochondrial; beta-sandwich, helix, substrate binding domain, structural G consortium, SGC, chaperone; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=2e-21 Score=216.11 Aligned_cols=129 Identities=43% Similarity=0.687 Sum_probs=119.9
Q ss_pred CCceeeeccccccceEEeeccEEEEEEecCCcCCCCcEEEEEeecccccceeEEEeecCcccccCCceeEEEEeeCCCCC
Q psy15216 2401 DDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPM 2480 (2602)
Q Consensus 2401 ~~~~~~~d~~~~~~gi~~~~~~~~~ii~k~t~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~~~~~ 2480 (2602)
+..+.+.|++|++|||++.+|.|.+||+||++||+++++.|+|..|||+.+.|.||||++..+.+|..||+|.|+++||+
T Consensus 17 ~~~f~l~DV~P~slGie~~gg~~~~lI~rnt~iP~~k~~~f~T~~DnQ~~v~I~VyqGE~~~~~dn~~LG~f~l~gipp~ 96 (182)
T 3n8e_A 17 NLYFQSMDVTPLSLGIETLGGVFTKLINRNTTIPTKKSQVFSTAADGQTQVEIKVCQGEREMAGDNKLLGQFTLIGIPPA 96 (182)
T ss_dssp -------CBCSSCEEEECTTSBEEEEECTTCBSSEEEEEEECCSSTTCCCEEEEEEESSCSBGGGSEEEEEEEECCCCCC
T ss_pred CCCEEEEEecCCEEEEEEeCCEEEEEEeCCCccCEEEEEEEEECCCCccEEEEEEEEcCccccccCceEEEEEEcCCCCC
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccEEEEEEEEcCCccEEEEEEeecCCcEEEEEEecCCCCChHHHhc
Q psy15216 2481 PAGRARIKVTYQVDADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKN 2529 (2602)
Q Consensus 2481 ~~g~~~i~v~f~id~~g~l~V~a~~~~tg~~~~~~i~~~~~l~~~ei~~ 2529 (2602)
|+|.++|+|+|+||.||+|+|+|.++.||++..++|...++||++||++
T Consensus 97 p~G~~~IeVtf~iD~nGiL~VsA~d~~tg~~~~i~I~~~~~Ls~eei~~ 145 (182)
T 3n8e_A 97 PRGVPQIEVTFDIDANGIVHVSAKDKGTGREQQIVIQSSGGLSKDDIEN 145 (182)
T ss_dssp CTTCSCEEEEEEECTTCCEEEEEEETTTCCEEEEEESCCCCCCHHHHHH
T ss_pred CCCCeeEEEEEEEecCCEEEEEEEEcCCCCEeeEEEecCccCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999995
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.2e-21 Score=253.92 Aligned_cols=298 Identities=15% Similarity=0.079 Sum_probs=202.9
Q ss_pred HHHHHHHHHHHh------CCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCC-----EEEEc-CCCCcchHHHHHHHH---
Q psy15216 1439 IEKARNEVAQLI------YADPREIIWTSGATESNNLAIKGAAHFYKKRGK-----HIITV-QTEHKSVLDSIRKLE--- 1503 (2602)
Q Consensus 1439 ~~~lr~~ia~~~------g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd-----~Vlv~-~~~~~s~~~~~~~~~--- 1503 (2602)
..++|+++++++ ++++++|++|+|+|+|+++++.++. ++|| +|+++ +|+|+++...+....
T Consensus 77 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~----~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~ 152 (417)
T 3g7q_A 77 KTALLNALAVLLRETLGWDIEPQNIALTNGSQSAFFYLFNLFA----GRRADGSTKKVLFPLAPEYIGYADSGLEDDLFV 152 (417)
T ss_dssp HHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHS----BC----CCBEEEESSCCCHHHHHC-----CCEE
T ss_pred cHHHHHHHHHHHHHHhCCCCCcccEEEeCCcHHHHHHHHHHHc----CCCccCCcceEEEeCCCccccchhhccchhhhc
Confidence 567888888887 5688899999999999999999987 7877 99998 999998776554331
Q ss_pred hCCcEEEEeccCC-CCCcChhHHHhhccCCceEEEEeccccccccccC---hHHHHHHhhhcCCEEEEecccccCccccc
Q psy15216 1504 NDGFRVTYLKPKN-NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQAVGKIDIN 1579 (2602)
Q Consensus 1504 ~~G~~v~~v~~~~-~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~---l~~I~~ia~~~gi~vivD~a~~~g~~~~~ 1579 (2602)
..+..+..++.+. ++.+|+++++ +++++++|++++|+||||.++| +++|.++|++||+++|+|++|+.......
T Consensus 153 ~~~~~~~~~~~~~~~~~~d~~~l~--~~~~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~~~~~~~ 230 (417)
T 3g7q_A 153 SARPNIELLPEGQFKYHVDFEHLH--IGEETGMICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVPFPGII 230 (417)
T ss_dssp ECCCEEEEEGGGEEEEECCGGGCC--CCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCB
T ss_pred cccCcccccCCcccccccCHHHhc--cccCceEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCcccccccc
Confidence 1244555555432 3568999998 7889999999999999999999 88999999999999999999975321111
Q ss_pred -----CCCCCccEEEEccccccCCCc--eEEEEEecCCCCccccccccCCccccCCCCCcchhHHHHHHHHHHH--HHHH
Q psy15216 1580 -----IQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRL--ARIE 1650 (2602)
Q Consensus 1580 -----l~~~~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~--~~~~ 1650 (2602)
....+.++++.|+|| ++++| +||++.++++++.+...... . ..+++...+.++..+++. ....
T Consensus 231 ~~~~~~~~~~~~i~~~s~sK-~~~~G~r~G~~~~~~~~~~~~~~~~~~------~-~~~~~~~~~~~~~~~l~~~~~~~~ 302 (417)
T 3g7q_A 231 FSEARPLWNPNIILCMSLSK-LGLPGSRCGIIIANDKTITAIANMNGI------I-SLAPGGMGPAMMCEMIKRNDLLRL 302 (417)
T ss_dssp CSCCCCCCCTTEEEEEESGG-GTCTTSCCEEEECCHHHHHHHHHHHHH------H-CCCCCSHHHHHHHHHHHTTCHHHH
T ss_pred ccccccCCCCCEEEEEechh-ccCCCcceEEEEeCHHHHHHHHHhhcc------e-eeCCCcHHHHHHHHHHcCcchHHH
Confidence 112356788999999 46666 89999887766655443211 1 123444455555455551 1112
Q ss_pred HHH-HHHHHHHHHHHHHHHHhhcCC--cEEEeCCCCCCCCceEEEEEec--CCcHHHHHhc--CCEEEccccccCCCCCC
Q psy15216 1651 MKE-ELKRILFLQKRLYNGLMESIE--EIYINGDMNNRIPHNLNISFNF--IEGESLLMAI--KDIAVSSGSACTSASLE 1723 (2602)
Q Consensus 1651 ~~~-~~~~~~~l~~~l~~~L~~~~~--gl~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~L--~gI~v~~g~~~~~~~~~ 1723 (2602)
..+ ..+++.++++.+.+.|.+.++ ++.+..+.. .....+.++. .+..++...| +||.+++|..|.....
T Consensus 303 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~f~~~~~- 378 (417)
T 3g7q_A 303 SETVIKPFYYQRVQQTIAIIRRYLSEERCLIHKPEG---AIFLWLWFKDLPITTELLYQRLKARGVLMVPGHYFFPGLD- 378 (417)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHCCTTTCEEECCCB---SSEEEEECTTCSSCHHHHHHHHHHTTEECEEGGGGCTTBS-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCceeeCCCc---ceEEEEEcCCCCCCHHHHHHHHHHCCEEEECchhhCCCCc-
Confidence 222 566777778888888876455 356654322 2233344442 3566676666 8999999998865310
Q ss_pred hhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1724 PSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1724 ~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
.......+++|||++. +.+++++++++|++.
T Consensus 379 ---------~~~~~~~~~iRis~~~--~~~~i~~~~~~l~~~ 409 (417)
T 3g7q_A 379 ---------KPWPHTHQCMRMNYVP--EPDKIEAGVKILAEE 409 (417)
T ss_dssp ---------SCCGGGGGEEEEESCS--CHHHHHHHHHHHHHH
T ss_pred ---------cccccCCCeEEEEecC--CHHHHHHHHHHHHHH
Confidence 0000113799999985 899999999999974
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=9e-21 Score=250.66 Aligned_cols=317 Identities=15% Similarity=0.112 Sum_probs=222.8
Q ss_pred CCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHh----CCCCCcEEEeCCHHHHHHHHHHhhhhhh
Q psy15216 1403 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI----YADPREIIWTSGATESNNLAIKGAAHFY 1478 (2602)
Q Consensus 1403 ~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~----g~~~~~iv~t~gaT~al~~al~~l~~~~ 1478 (2602)
.+.++.+++++.+.++... +++. .+.++ ......++|+++++++ ++++++|++|+|+++++.++ .++.
T Consensus 68 ~~~~~~v~~a~~~~~~~~~-~~~~-~~~y~--~~~g~~~l~~~ia~~~~~~~~~~~~~i~~t~G~~~al~~l-~~l~--- 139 (432)
T 3ei9_A 68 EPIPEVITSAMAKKAHELS-TIEG-YSGYG--AEQGAKPLRAAIAKTFYGGLGIGDDDVFVSDGAKCDISRL-QVMF--- 139 (432)
T ss_dssp SCCCHHHHHHHHHHHHHTT-STTT-CCCCC--CTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCHHHHHHHH-HHHH---
T ss_pred CCCCHHHHHHHHHHHhccc-ccCC-ccCCC--CCCCCHHHHHHHHHHHHccCCCCcceEEECCChHHHHHHH-HHHc---
Confidence 5788999999999887532 1110 11111 1112467888888886 77888999999999999874 6665
Q ss_pred ccCCCEEEEcCCCCcchHHHHHHHHhCC---------cEEEEeccCCC--CCcChhHHHhhccCCceEEEEecccccccc
Q psy15216 1479 KKRGKHIITVQTEHKSVLDSIRKLENDG---------FRVTYLKPKNN--GLITLSQLEEKICSDTILVSVMLVNNEIGV 1547 (2602)
Q Consensus 1479 ~~~gd~Vlv~~~~~~s~~~~~~~~~~~G---------~~v~~v~~~~~--~~id~d~l~~~i~~~t~lv~l~~~~n~tG~ 1547 (2602)
++||+|++++|.|+++...+..+...| .++++++.+.+ ...|+++ .+++++|++++|+||||.
T Consensus 140 -~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~v~l~~p~NPtG~ 213 (432)
T 3ei9_A 140 -GSNVTIAVQDPSYPAYVDSSVIMGQTGQFNTDVQKYGNIEYMRCTPENGFFPDLST-----VGRTDIIFFCSPNNPTGA 213 (432)
T ss_dssp -CTTCCEEEEESCCTHHHHHHHHHTCSCCEETTTTEETTCEEEECCGGGTTSCCGGG-----CCCCSEEEEESSCTTTCC
T ss_pred -CCCCEEEEeCCCCHHHHHHHHHcCCcccccccccccCceEEeccCcccCCcCChhh-----CCCCCEEEEeCCCCCCCC
Confidence 799999999999999988888774333 35777777643 3344332 478999999999999999
Q ss_pred ccC---hHHHHHHhhhcCCEEEEecccccCc---ccccCCC----CCccEEEEccccccCCCc--eEEEEEecCCC----
Q psy15216 1548 IQP---ILEIGELCRSKGVIFHCDAAQAVGK---IDINIQN----YKVDLMSFSAHKIYGPKG--IGALYIRRNPR---- 1611 (2602)
Q Consensus 1548 ~~~---l~~I~~ia~~~gi~vivD~a~~~g~---~~~~l~~----~~~D~~v~S~~K~~gp~G--~G~l~~~~~~~---- 1611 (2602)
++| +++|+++|++||+++|+|++|+... .+..+.. .+.++++.|+||.+|++| +||++++++.+
T Consensus 214 ~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~r~G~~~~~~~~~~~~~ 293 (432)
T 3ei9_A 214 AATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNPRSIFEIPGAEEVAMETASFSNYAGFTGVRLGWTVIPKKLLYSDG 293 (432)
T ss_dssp CCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSCCSSGGGSTTGGGTEEEEEESHHHHCTTTTCCEEEECCTTCBCTTS
T ss_pred CCCHHHHHHHHHHHHHcCcEEEEccchHhhccCCCCCChhhcCCCCCeEEEEecchhccCCcccceEEEEEChHHhhcch
Confidence 998 6677777999999999999998432 1222211 235688999999888777 89999998762
Q ss_pred ----CccccccccCCccccCCCCCcchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCC
Q psy15216 1612 ----TRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRI 1686 (2602)
Q Consensus 1612 ----~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~-~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~ 1686 (2602)
+.+.... ....++++.+.+.++.+++. ....++++.++++.++++++.+.|.+ . ++.+..+...
T Consensus 294 ~~~~~~~~~~~-------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~-- 362 (432)
T 3ei9_A 294 FPVAKDFNRII-------CTCFNGASNISQAGALACLTPEGLEAMHKVIGFYKENTNIIIDTFTS-L-GYDVYGGKNA-- 362 (432)
T ss_dssp CBHHHHHHHHH-------HHSCCCSCHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHH-T-TCCEEECSSS--
T ss_pred HHHHHHHHHHh-------ccccCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH-C-CceecCCCcc--
Confidence 2222111 11123456666666656664 33355788889999999999999987 3 6666543221
Q ss_pred CceEEEEEecCCcHHHHHhc---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHH
Q psy15216 1687 PHNLNISFNFIEGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK 1763 (2602)
Q Consensus 1687 ~~~~~~~~~~~~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~ 1763 (2602)
....+.++..+..++...| +||.+++|..|.+. ..+++||++. ++.+++++++++|+
T Consensus 363 -~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~-----------------~~~~iRis~~--~~~e~l~~~l~rl~ 422 (432)
T 3ei9_A 363 -PYVWVHFPNQSSWDVFAEILEKTHVVTTPGSGFGPG-----------------GEGFVRVSAF--GHRENILEACRRFK 422 (432)
T ss_dssp -SEEEEECTTSCHHHHHHHHHHHHCEECEEGGGGCGG-----------------GTTEEEEECC--SCHHHHHHHHHHHH
T ss_pred -eEEEEECCCCCHHHHHHHHHHHCCEEEeCchHhCCC-----------------CCCEEEEEec--CCHHHHHHHHHHHH
Confidence 2333444444555665554 49999999887642 1389999974 59999999999999
Q ss_pred H
Q psy15216 1764 M 1764 (2602)
Q Consensus 1764 ~ 1764 (2602)
+
T Consensus 423 ~ 423 (432)
T 3ei9_A 423 Q 423 (432)
T ss_dssp H
T ss_pred H
Confidence 6
|
| >2qq4_A Iron-sulfur cluster biosynthesis protein ISCU; zinc binding, iron-sulfur cluster binding, three conserved Cys, three beta strands; 1.85A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.2e-22 Score=210.99 Aligned_cols=92 Identities=36% Similarity=0.585 Sum_probs=85.9
Q ss_pred hhhhhhhhhhhhhcCCCCcCcccCCCCcceeeeecCCCCccEEEEEEEEcCCCcEEeeeeeccccchhHhhHHHHHHHHc
Q psy15216 1767 FFMSYSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKTYGCGSAIASSSLVTEWVK 1846 (2602)
Q Consensus 1767 ~~~~y~~~i~dh~~~p~~~g~~~~~~~~~~~~~~~~~~cgd~~~~~~~~~~~~~i~~~~~~~~gc~~~~a~~s~~~~~~~ 1846 (2602)
+..+|+++|+|||+||||+|.+++++ ++++++||+|||.|+|||+|+ +|+|+|++|+|+||+++||||||+||+++
T Consensus 4 l~~lY~~~Ildh~~nP~n~G~l~~~~---~~~~~~np~CGD~i~l~l~v~-~~~I~d~~f~~~GCais~ASaS~~te~i~ 79 (138)
T 2qq4_A 4 LDELYREILLDHYQSPRNFGVLPQAT---KQAGGMNPSCGDQVEVMVLLE-GDTIADIRFQGQGCAISTASASLMTEAVK 79 (138)
T ss_dssp HHHHHHHHHHHHHHSCTTBSCCTTCS---EEEEEECTTTCCEEEEEEEEE-TTEEEEEEEEEECCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCCCC---eEEeeCCCCCCCEEEEEEEEC-CCEEEEEEEEecCCHHHHHHHHHHHHHHc
Confidence 46789999999999999999999877 899999999999999999995 78999999999999999999999999999
Q ss_pred CCChhhhhcccccchh
Q psy15216 1847 GKTLDEAMSIKNTDIA 1862 (2602)
Q Consensus 1847 g~~~~~~~~i~~~~i~ 1862 (2602)
|||++||..+++....
T Consensus 80 Gkt~~ea~~i~~~~~~ 95 (138)
T 2qq4_A 80 GKKVAEALELSRKFQA 95 (138)
T ss_dssp TSBHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHH
Confidence 9999999999975533
|
| >3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.85 E-value=4e-21 Score=253.03 Aligned_cols=336 Identities=18% Similarity=0.205 Sum_probs=229.9
Q ss_pred ccCCCCCCCHHHHHHHHHHHhhcc--CCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhh
Q psy15216 1398 FKDATTPIDPRVVDKMIPYLRVQF--GNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAA 1475 (2602)
Q Consensus 1398 L~~~~~~~~~~v~eal~~~l~~~~--~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~ 1475 (2602)
+..+....++.+.+++.+.+...+ ++|++..+..........+.+++++++++|+++++|++++| |+|+..++.++.
T Consensus 30 l~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~~sG-t~a~~~~~~~~~ 108 (417)
T 3n0l_A 30 MIASENFTLPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNCKFANVQPNSG-SQANQGVYAALI 108 (417)
T ss_dssp CCTTCCCCCHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSH-HHHHHHHHHHHS
T ss_pred eecccCCCCHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHHhCCCCcceEeccH-HHHHHHHHHHhc
Confidence 333344568899999988885543 45543233333334456667888999999998767777666 899999999986
Q ss_pred hhhccCCCEEEEcCCCCcchHHHHHHHH--hCCcEEEEeccCCCCCcChhHHHhhcc-CCceEEEEeccccccccccChH
Q psy15216 1476 HFYKKRGKHIITVQTEHKSVLDSIRKLE--NDGFRVTYLKPKNNGLITLSQLEEKIC-SDTILVSVMLVNNEIGVIQPIL 1552 (2602)
Q Consensus 1476 ~~~~~~gd~Vlv~~~~~~s~~~~~~~~~--~~G~~v~~v~~~~~~~id~d~l~~~i~-~~t~lv~l~~~~n~tG~~~~l~ 1552 (2602)
++||+|++++++|+++........ ..+..++.++.+.++.+|+++|+++++ +++++|++++++| |.+.|++
T Consensus 109 ----~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~--G~~~~l~ 182 (417)
T 3n0l_A 109 ----NPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVELDGRIDYEKVREIAKKEKPKLIVCGASAY--ARVIDFA 182 (417)
T ss_dssp ----CTTCEEEEECC----------------CCSEEEEECCCTTSSCCHHHHHHHHHHHCCSEEEECCSSC--CSCCCHH
T ss_pred ----CCCCEEEecccccccccchhhhhhhhcceeeeEeccCCCCCCcCHHHHHHHHHhcCCeEEEECCccc--CccCCHH
Confidence 899999999999998765433322 235667777777777899999999998 6899999988775 9999999
Q ss_pred HHHHHhhhcCCEEEEecccccCcc-----cccCCCCCccEEEEcccc-ccCCCceEEEEEe-cCCCCccccccccCCccc
Q psy15216 1553 EIGELCRSKGVIFHCDAAQAVGKI-----DINIQNYKVDLMSFSAHK-IYGPKGIGALYIR-RNPRTRIEAQIHGGGHEY 1625 (2602)
Q Consensus 1553 ~I~~ia~~~gi~vivD~a~~~g~~-----~~~l~~~~~D~~v~S~~K-~~gp~G~G~l~~~-~~~~~~l~~~~~g~~~~~ 1625 (2602)
+|.++|++||+++|+|++|+.|.. +..+. ..|++++|+|| +.|++| |+++.+ +++.+.+.+....+
T Consensus 183 ~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~--~~di~~~s~sK~l~g~~~-G~~~~~~~~~~~~~~~~~~~~---- 255 (417)
T 3n0l_A 183 KFREIADEIGAYLFADIAHIAGLVVAGEHPSPFP--YAHVVSSTTHKTLRGPRG-GIIMTNDEELAKKINSAIFPG---- 255 (417)
T ss_dssp HHHHHHHHHTCEEEEECTTTHHHHHTTSSCCCTT--TCSEEEEESSTTTCSCSC-EEEEESCHHHHHHHHHHHTTT----
T ss_pred HHHHHHHHcCCEEEEECccchhhhhcccCCCccc--cceEEEeeCccccCCCCe-eEEEECCHHHHHHHhhhhCCc----
Confidence 999999999999999999876654 22222 46899999999 557775 999998 45555554433211
Q ss_pred cCCCCCcchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEec--CCcHHH
Q psy15216 1626 GLRSGTLATHQIVGMGEAFRL-ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF--IEGESL 1702 (2602)
Q Consensus 1626 ~~~~gt~~~~~~~al~~aL~~-~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~--~~~~~~ 1702 (2602)
..++++...+.++..++.. ...+++...++..++++++.+.|.+ .++.+..... ......+.+.. .+...+
T Consensus 256 --~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~--~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 329 (417)
T 3n0l_A 256 --IQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMD--RKFKLVSDGT--DNHLVLMSFLDREFSGKDA 329 (417)
T ss_dssp --TCSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH--TTCEEGGGSC--SSSEEEEECTTSSSCHHHH
T ss_pred --ccCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh--CCceeccCCC--CceEEEEEcccCCCCHHHH
Confidence 2356677777777777764 3356788889999999999999987 5777764211 12333344432 244555
Q ss_pred HHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCC----CCHHHHHHHHHHHHHhh
Q psy15216 1703 LMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRF----TTEKEIDFTIKLLKMKE 1766 (2602)
Q Consensus 1703 ~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~----~t~edid~li~~L~~~~ 1766 (2602)
...| +||.++++..+... ......+.+|+++... .+++++++++++|++..
T Consensus 330 ~~~l~~~gi~v~~~~~~~~~-------------~~~~~~~~~ri~~~~~~~~~~~~~~i~~~~~~l~~~l 386 (417)
T 3n0l_A 330 DLALGNAGITANKNTVPGEI-------------RSPFITSGLRLGTPALTARGFKEKEMEIVSNYIADIL 386 (417)
T ss_dssp HHHHHHTTEECEECCCTTCC-------------SCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCeEEeccccCCCC-------------cccCCCCeeEecCHHHhhCCCCHHHHHHHHHHHHHHH
Confidence 5555 79998865433221 0011236799987543 46899999999998853
|
| >4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A | Back alignment and structure |
|---|
Probab=99.85 E-value=3e-21 Score=222.96 Aligned_cols=127 Identities=48% Similarity=0.718 Sum_probs=122.9
Q ss_pred eeeeccccccceEEeeccEEEEEEecCCcCCCCcEEEEEeecccccceeEEEeecCcccccCCceeEEEEeeCCCCCCCC
Q psy15216 2404 FLLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAG 2483 (2602)
Q Consensus 2404 ~~~~d~~~~~~gi~~~~~~~~~ii~k~t~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~~~~~~~g 2483 (2602)
+++.|++|+||||++.+|.|.+||+|||+||+++++.|+|..|||+.+.|.||||++..+.+|..||+|.|+|+||+|+|
T Consensus 1 ~~l~DV~p~slGie~~gg~~~~lI~rnt~iP~~k~~~f~t~~dnQ~~v~I~VyqGe~~~~~dn~~Lg~f~l~gipp~p~G 80 (219)
T 4e81_A 1 VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRG 80 (219)
T ss_dssp CCCCCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCCCSTT
T ss_pred CeEEEecCcEEEEEEeCCEEEEEEeCcCcccEeEEEEEEeCCCCCceEEEEEEEcCCcccccCCEEEEEEEeCCCCCCCC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEEEEEcCCccEEEEEEeecCCcEEEEEEecCCCCChHHHhcc
Q psy15216 2484 RARIKVTYQVDADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKNG 2530 (2602)
Q Consensus 2484 ~~~i~v~f~id~~g~l~V~a~~~~tg~~~~~~i~~~~~l~~~ei~~~ 2530 (2602)
.++|+|+|+||.||+|+|+|.++.||++..++|...++||++||++.
T Consensus 81 ~~~IeVtf~iD~nGiL~V~a~d~~tg~~~~i~I~~~~~Ls~eeI~~m 127 (219)
T 4e81_A 81 MPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKM 127 (219)
T ss_dssp CSCEEEEEEECTTCCEEEEEEETTTCCEEEEEECTTCSCCHHHHHHH
T ss_pred CceEEEEEEeCCCCCEeeeeeccccCccceEeeeccccccHHHHHHH
Confidence 99999999999999999999999999999999999888999999953
|
| >2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.7e-21 Score=252.54 Aligned_cols=335 Identities=16% Similarity=0.140 Sum_probs=234.5
Q ss_pred eccCCCCCCCHHHHHHHHHHHhh--ccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhh
Q psy15216 1397 VFKDATTPIDPRVVDKMIPYLRV--QFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGA 1474 (2602)
Q Consensus 1397 ~L~~~~~~~~~~v~eal~~~l~~--~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l 1474 (2602)
.+..+..+.++.+.+++.+.+.. ..++|+...+..........+.+|+++++++|+++++++++ ++|+|+..++.++
T Consensus 27 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g~~~~~i~~~-sGt~a~~~~~~~~ 105 (407)
T 2dkj_A 27 ELIASENFVSKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALFGAAWANVQPH-SGSQANMAVYMAL 105 (407)
T ss_dssp ECCTTCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCS-SHHHHHHHHHHHH
T ss_pred eeccCCCCCCHHHHHHHHhhhhcCcccCCCcccccCCchHHHHHHHHHHHHHHHHhCCCcceEEec-chHHHHHHHHHHh
Confidence 34334445588999999998864 23445431111111112233346789999999875445444 5567999999988
Q ss_pred hhhhccCCCEEEEcCCCCcchH---HHHHHHHhCCc--EEEEeccCC-CCCcChhHHHhhccC-CceEEEEecccccccc
Q psy15216 1475 AHFYKKRGKHIITVQTEHKSVL---DSIRKLENDGF--RVTYLKPKN-NGLITLSQLEEKICS-DTILVSVMLVNNEIGV 1547 (2602)
Q Consensus 1475 ~~~~~~~gd~Vlv~~~~~~s~~---~~~~~~~~~G~--~v~~v~~~~-~~~id~d~l~~~i~~-~t~lv~l~~~~n~tG~ 1547 (2602)
. ++||+|++++++|+++. ..+... |. .++.+++++ ++.+|+++|++++++ ++++|++++|+|| .
T Consensus 106 ~----~~gd~Vl~~~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~p~~~--~ 176 (407)
T 2dkj_A 106 M----EPGDTLMGMDLAAGGHLTHGSRVNFS---GKLYKVVSYGVRPDTELIDLEEVRRLALEHRPKVIVAGASAYP--R 176 (407)
T ss_dssp C----CTTCEEEEECGGGTCCGGGTCTTSHH---HHHSEEEEECCCTTTSSCCHHHHHHHHHHHCCSEEEECCSSCC--S
T ss_pred c----CCCCEEEEecccccCccchHHHHHhc---CceEEEEecCCCcccCccCHHHHHHHHhhcCCeEEEEeccccC--C
Confidence 6 79999999999999984 333333 44 455555453 677999999999985 8999999889886 7
Q ss_pred ccChHHHHHHhhhcCCEEEEecccccCcccccCCC---CCccEEEEcccc-ccCCCceEEEEEe-cCCCCccccccccCC
Q psy15216 1548 IQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQN---YKVDLMSFSAHK-IYGPKGIGALYIR-RNPRTRIEAQIHGGG 1622 (2602)
Q Consensus 1548 ~~~l~~I~~ia~~~gi~vivD~a~~~g~~~~~l~~---~~~D~~v~S~~K-~~gp~G~G~l~~~-~~~~~~l~~~~~g~~ 1622 (2602)
..|+++|.++|++||+++|+|++|+.|....+... ..+|++++|+|| +.|++| |+++++ +++++.+.+...
T Consensus 177 ~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~l~g~~~-G~~~~~~~~~~~~l~~~~~--- 252 (407)
T 2dkj_A 177 FWDFKAFREIADEVGAYLVVDMAHFAGLVAAGLHPNPLPYAHVVTSTTHKTLRGPRG-GLILSNDPELGKRIDKLIF--- 252 (407)
T ss_dssp CCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCCCTTTCSEEEEESSGGGCCCSC-EEEEESCHHHHHHHHHHHT---
T ss_pred CCCHHHHHHHHHHcCCEEEEEccccccccccCccCCccccccEEEEeccccCCCCCc-eEEEECCHHHHHHHHhhhc---
Confidence 78999999999999999999999987554332211 137999999999 557886 999998 566666654332
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEec--CCc
Q psy15216 1623 HEYGLRSGTLATHQIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF--IEG 1699 (2602)
Q Consensus 1623 ~~~~~~~gt~~~~~~~al~~aL~~~-~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~--~~~ 1699 (2602)
.+..++++...+.++.++++.. ..++++..++..++++++.+.|.+ . ++.+..++. ...+..+.++. .+.
T Consensus 253 ---~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~--~~~~~~~~~~~~~~~~ 325 (407)
T 2dkj_A 253 ---PGIQGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAEELAR-R-GYRIVTGGT--DNHLFLVDLRPKGLTG 325 (407)
T ss_dssp ---TTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-T-TCEEGGGSC--SSSEEEEECGGGTCCH
T ss_pred ---ccccCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh-C-CceeecCCC--CceEEEEECcccCCCH
Confidence 1234567777777777888864 356788999999999999999988 4 777764322 23444455543 245
Q ss_pred HHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCC----CCHHHHHHHHHHHHHh
Q psy15216 1700 ESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRF----TTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1700 ~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~----~t~edid~li~~L~~~ 1765 (2602)
..+...| +||.++++..+... .+ ....+++|++++.+ .|++|+++++++|++.
T Consensus 326 ~~~~~~l~~~gi~v~~~~~~~~~----------~~---~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~ 384 (407)
T 2dkj_A 326 KEAEERLDAVGITVNKNAIPFDP----------KP---PRVTSGIRIGTPAITTRGFTPEEMPLVAELIDRA 384 (407)
T ss_dssp HHHHHHHHHTTEECEECCCTTCS----------SC---TTTCSEEEEECHHHHHTTCCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHcCceecCCcCcccc----------cc---ccCCCceeeecccccccCCCHHHHHHHHHHHHHH
Confidence 5666666 79999987643110 00 00137899998653 6899999999999974
|
| >2op6_A Heat shock 70 kDa protein D; HSP70/peptide-binding domain, structural genomics, APC90014. 2, protein structure initiative; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.8e-21 Score=212.22 Aligned_cols=133 Identities=38% Similarity=0.615 Sum_probs=124.6
Q ss_pred eeccccccceEeeeccEEEEEEecCCCCCCCcEEEEEeccccccceeeeEeecCccccccCceeeeeEecCCCCCCCCcc
Q psy15216 1010 LLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRA 1089 (2602)
Q Consensus 1010 ~~dv~~~~~gi~~~~~~~~~ii~~~t~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~i~~~~~g~~ 1089 (2602)
+.|++|++||+++.+|.|.+||+||++||+++++.|+|..|||+.+.|.||||++..+.+|..||+|.|+|+||.|+|.+
T Consensus 2 v~Dv~p~slGi~~~~g~~~~li~rnt~iP~~k~~~f~t~~d~Q~~v~i~v~qGe~~~~~~n~~lg~~~l~gipp~p~G~~ 81 (152)
T 2op6_A 2 NADVNPLTLGIETVGGVMTKLIGRNTVIPTKKSQVFSTAADSQSAVSIVIYEGERPMVMDNHKLGNFDVTGIPPAPRGVP 81 (152)
T ss_dssp -CCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCCCEEEEEEESSCSBGGGSEEEEEEEECCCCCCCTTCS
T ss_pred ceEeecccEEEEEeCCEEEEEEeCCCcccEeEEEEEEeCCCCCcEEEEEEEEeCCccCccCCEeEEEEEECCCCCCCCCc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEECCCeeEEEEEEEecCCceEEEEEecCC-CCCHHHHHhhhhccccCCCc
Q psy15216 1090 RIKVTYQVDADGLLSIFAYEKISGKKKFITIKPFY-NMNLDEIKNGAIFNENSGIS 1144 (2602)
Q Consensus 1090 ~i~v~f~~d~~g~l~v~a~~~~~g~~~~~~~~~~~-~l~~~~i~~~~~~~~~~g~~ 1144 (2602)
+|+|+|+||.||+|+|+|.+..||++..++|.... +||++||++++ ++++.+.
T Consensus 82 ~I~V~f~id~nGiL~V~a~d~~tg~~~~i~i~~~~~~ls~eei~~~~--~~~~~~~ 135 (152)
T 2op6_A 82 QIEVTFEIDVNGILHVSAEDKGTGNKNKLTITNDHNRLSPEDIERMI--NDADKFA 135 (152)
T ss_dssp CEEEEEEECTTSCEEEEEEETTTCCEEEEEECSSSSCCCHHHHHHHH--HHHHHTH
T ss_pred eEEEEEEECCCcEEEEEEEEecCCcEEEEEeeccccCCCHHHHHHHH--HHHHHhH
Confidence 99999999999999999999999999999999884 59999999986 5544443
|
| >3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=6.1e-21 Score=247.64 Aligned_cols=304 Identities=14% Similarity=0.065 Sum_probs=212.7
Q ss_pred HHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHHH-HhCCcEEEEec
Q psy15216 1435 AEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDGFRVTYLK 1513 (2602)
Q Consensus 1435 ~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~-~~~G~~v~~v~ 1513 (2602)
......++++++++++|.+ ++++++|+++|++.++.++. ++||+|+++.+.|+++...+... ...|.++++++
T Consensus 64 ~~~~~~~l~~~la~~~g~~--~~~~~~sGt~A~~~al~~~~----~~gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~ 137 (392)
T 3qhx_A 64 GNPTRTALEAALAAVEDAA--FGRAFSSGMAAADCALRAML----RPGDHVVIPDDAYGGTFRLIDKVFTGWNVEYTPVA 137 (392)
T ss_dssp CCHHHHHHHHHHHHHTTCS--EEEEESSHHHHHHHHHHHHC----CTTCEEEEETTCCHHHHHHHHHTGGGGTCEEEEEC
T ss_pred CChHHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHHh----CCCCEEEEeCCCcchHHHHHHHHHHhcCcEEEEeC
Confidence 3456789999999999975 78999999999999999886 89999999999999887766433 55699999998
Q ss_pred cCCCCCcChhHHHhhccCCceEEEEeccccccccccChHHHHHHhhhcCCEEEEecccccCcccccCCCCCccEEEEccc
Q psy15216 1514 PKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAH 1593 (2602)
Q Consensus 1514 ~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~ 1593 (2602)
.+ |+++++++++++|++|++++|+||||.+.|+++|.++|++||+++|+|++|+.+... ....+++|+++.|+|
T Consensus 138 ~~-----d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~g~~li~D~~~~~~~~~-~~~~~~~di~~~S~s 211 (392)
T 3qhx_A 138 LA-----DLDAVRAAIRPTTRLIWVETPTNPLLSIADIAGIAQLGADSSAKVLVDNTFASPALQ-QPLSLGADVVLHSTT 211 (392)
T ss_dssp TT-----CHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCTTTC-CGGGGTCSEEEEETT
T ss_pred CC-----CHHHHHHhhCCCCeEEEEECCCCCCcEEecHHHHHHHHHHcCCEEEEECCCcccccC-ChHHhCCcEEEEcCc
Confidence 65 899999999999999999999999999999999999999999999999999876432 233567899999999
Q ss_pred cccCCCc---eEEEEEec-CCCCccccccccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15216 1594 KIYGPKG---IGALYIRR-NPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGL 1669 (2602)
Q Consensus 1594 K~~gp~G---~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L 1669 (2602)
|++|++| +|+++.++ ++.+.+...... ...+.+....+++..+++. +....++..++++++.+.|
T Consensus 212 K~lg~~g~~~~G~v~~~~~~~~~~l~~~~~~-------~g~~~~~~~~~~~~~~l~~----l~~~~~~~~~~~~~l~~~L 280 (392)
T 3qhx_A 212 KYIGGHSDVVGGALVTNDEELDQSFAFLQNG-------AGAVPGPFDAYLTMRGLKT----LVLRMQRHSENAAAVAEFL 280 (392)
T ss_dssp TTTTCSSCCCCEEEEESCHHHHHHHHHHHHH-------HCCCCCHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCceEEEEEECcHHHHHHHHHHHHh-------cCCCCCHHHHHHHHhhhhH----HHHHHHHHHHHHHHHHHHH
Confidence 9887766 79999874 444444322110 1122333333333233332 3444566677777888888
Q ss_pred hhcCCcEEEe-CCC--C-----------CCCCceEEEEEec--CCcHHHHHhc--CCEEEccccccCCCCCChhHHHHHc
Q psy15216 1670 MESIEEIYIN-GDM--N-----------NRIPHNLNISFNF--IEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRAL 1731 (2602)
Q Consensus 1670 ~~~~~gl~i~-~~~--~-----------~~~~~~~~~~~~~--~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~ 1731 (2602)
.+ .+.+... .+. . ...+.+..|.+++ .....++..| .++.++.|..|.............+
T Consensus 281 ~~-~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~~l~~~~~~~s~G~~~sl~~~~~~~~~~~~ 359 (392)
T 3qhx_A 281 AE-HPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAGRTAAEQLCAKTNIFILAESLGSVESLIEHPSAMTHAST 359 (392)
T ss_dssp HT-CTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTCHHHHHHHHHHCSSSEECSCCCCSSCEEECGGGTSCGGG
T ss_pred hc-CCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCCcHHHHHHHHHhCCCceECCCCCCCCceeeCccccccccc
Confidence 76 6766432 221 1 1124456666654 3345666666 5778887876542100000000000
Q ss_pred CC-CccccCCeEEEecCCCCCHHHHHHHHHHH
Q psy15216 1732 GC-NDELAHSSIRFTIGRFTTEKEIDFTIKLL 1762 (2602)
Q Consensus 1732 ~~-~~~~~~~~iRls~~~~~t~edid~li~~L 1762 (2602)
.. ......+.||||++..+++++++.+.++|
T Consensus 360 ~~~~~g~~~~~iRlSvg~e~~~~~i~~l~~al 391 (392)
T 3qhx_A 360 AGSQLEVPDDLVRLSVGIEDVADLLDDLKQAL 391 (392)
T ss_dssp BTTBCCCCTTEEEEECCSSCHHHHHHHHHHHH
T ss_pred CHHHcCCCCCeEEEEeccCCHHHHHHHHHHHh
Confidence 00 11123588999999999999998888876
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.6e-21 Score=253.27 Aligned_cols=291 Identities=14% Similarity=0.095 Sum_probs=220.2
Q ss_pred HHHHHHHHHHHh-----CCCCCc---EEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEE
Q psy15216 43 IEKARNEVAQLI-----YADPRE---IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVT 114 (2602)
Q Consensus 43 ~~~~r~~lA~~~-----g~~~~~---Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~ 114 (2602)
..++|+.+++++ ++++++ |++|+|+++|+++++.++. ++||+|+++.|.|+++...+.. +.|++++
T Consensus 90 ~~~lr~~ia~~~~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~----~~gd~Vl~~~p~y~~~~~~~~~--~~g~~~~ 163 (430)
T 2x5f_A 90 IEELRDLWQQKMLRDNPELSIDNMSRPIVTNALTHGLSLVGDLFV----NQDDTILLPEHNWGNYKLVFNT--RNGANLQ 163 (430)
T ss_dssp CHHHHHHHHHHHHHHCTTCCGGGBCCCEEESHHHHHHHHHHHHHC----CTTCEEEEESSCCTHHHHHHTT--TTCCEEE
T ss_pred CHHHHHHHHHHHhccCcccCCCccceEEEcCCchHHHHHHHHHHh----CCCCEEEEcCCcCccHHHHHHH--hcCCeEE
Confidence 467888899888 888888 9999999999999999987 7999999999999997655543 1599999
Q ss_pred EeccCC-CCccChHHHHhhccC---CceEEEEecccCccccccc---HHHHHHHHHh-----cCCEEEEecccccccc--
Q psy15216 115 YLKPKN-NGLITLSQLEEKICS---DTILVSVMLVNNEIGVIQP---ILEIGELCRS-----KGVIFHCDAAQAVGKI-- 180 (2602)
Q Consensus 115 ~v~~~~-~~~ld~e~l~~~i~~---~tklv~i~~~~npTG~~~~---l~~I~~la~~-----~g~~livD~a~a~g~~-- 180 (2602)
.++.++ ++.+|+++|++++++ +++++++++|+||||.++| +++|.++|++ ||+++|+|++|+....
T Consensus 164 ~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~ 243 (430)
T 2x5f_A 164 TYPIFDKDGHYTTDSLVEALQSYNKDKVIMILNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYED 243 (430)
T ss_dssp EECCBCTTSCBCSHHHHHHHHHCCSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSS
T ss_pred EEeccCccCCcCHHHHHHHHHhcCCCCEEEEEcCCCCCCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCc
Confidence 999865 467999999999976 8999999999999999999 8889999999 9999999999874321
Q ss_pred ----cc--cCCC-CCc---cEEEeccccccCCCC--cEEEEE---ecCCCCcccceecCCCccccccccCcchhHHHHHH
Q psy15216 181 ----DI--NIQN-YKV---DLMSFSAHKIYGPKG--IGALYI---RRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMG 245 (2602)
Q Consensus 181 ----~~--dl~~-~~~---D~~~~S~~K~~Gp~G--~G~l~~---~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~ 245 (2602)
++ ++.. .+. ++++.|+||.+|++| +||+++ ++++++.+.+..... .+...++++.+...++.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~a~~ 320 (430)
T 2x5f_A 244 VYTQSLFTALTNLHSNAILPIRLDGATKEFFAWGFRVGFMTFGTSDQTTKEVLEAKVKGL---IRSNISSGPLPTQSAVK 320 (430)
T ss_dssp SCCSCHHHHHHTTCCTTEEEEEEEEHHHHTTCGGGCCEEEEEBCCCHHHHHHHHHHHHHH---HHTTTSSCCHHHHHHHH
T ss_pred ccchHHHHHHhhccCCcceEEEEEecccCCCCCCCCeEEEEEecCCHHHHHHHHHHHhhh---hhcccCCCChHHHHHHH
Confidence 11 2322 344 688899999988778 799999 877766665432110 00123467777777777
Q ss_pred HHHH-HH--HHhHHHHHHHHHHHHHHHHHHHhhcc--CceEEeCCCCCCCCceEEEEEcccChhHHHHHh---CCeEEcc
Q psy15216 246 EAFR-LA--RIEMKEELKRILFLQKRLYNGLMESI--EEIYINGDMNNRIPHNLNISFNFIEGESLLMAI---KDIAVSS 317 (2602)
Q Consensus 246 ~al~-~~--~~~~~~~~~~~~~l~~~l~~~L~~~~--~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L---~gI~v~~ 317 (2602)
++|+ .. ...+++..+++.++++++.+.|.+.. .++.+..+.. +..+.+.++..+..++...| +||.+++
T Consensus 321 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~---g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~ 397 (430)
T 2x5f_A 321 HVLKNNKQFDKEIEQNIQTLKERYEVTKEVVYADQYHSHWQAYDFNS---GYFMAIKVHDVDPEALRKHLIDKYSIGVIA 397 (430)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTCGGGTTTEEECCCCB---SSEEEEEESSSCHHHHHHHHHHHHCEECEE
T ss_pred HHHccChHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCceeeCCCc---eEEEEeCCCCCCHHHHHHHHHHhCCEEEec
Confidence 7776 32 12345588888999999999997311 3677764432 23345556544566676666 5899887
Q ss_pred cccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 318 GSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 318 g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
| . .+++||+++. ++++++++++++|++.
T Consensus 398 g----~-------------------~~~iRis~~~-~~~e~i~~~~~~l~~~ 425 (430)
T 2x5f_A 398 L----N-------------------ATDIRIAFSC-VEKDDIPHVFDSIAKA 425 (430)
T ss_dssp C----S-------------------SSEEEEEGGG-SCGGGHHHHHHHHHHH
T ss_pred C----C-------------------CCeEEEEEec-CCHHHHHHHHHHHHHH
Confidence 6 1 2789999985 5899999999999864
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.85 E-value=8e-21 Score=250.63 Aligned_cols=296 Identities=11% Similarity=0.053 Sum_probs=213.1
Q ss_pred HHHHHHHHHHHHhCCCCCcEEEeCCHHHHH--HHHHHhccccccc--C----------CCEEEEcCCCCcccHHHHHHHH
Q psy15216 42 AIEKARNEVAQLIYADPREIIWTSGATESN--NLAIKGAAHFYKK--R----------GKHIITVQTEHKSVLDSIRKLE 107 (2602)
Q Consensus 42 ~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al--~~~~~~l~~~~~~--~----------gd~Vlv~~~~~~s~~~~~~~~~ 107 (2602)
...++|+++|+++++++++|++|+|+++++ ++++.++. . | ||+|++++|.|+++...++..
T Consensus 79 g~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~~~l~----~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~~~~~~- 153 (427)
T 3ppl_A 79 GIVDIRQIWADLLGVPVEQVLAGDASSLNIMFDVISWSYI----FGNNDSVQPWSKEETVKWICPVPGYDRHFSITERF- 153 (427)
T ss_dssp CCHHHHHHHHHHHTSCGGGEEECSSCHHHHHHHHHHHHHH----HCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHT-
T ss_pred CcHHHHHHHHHHhCCCcceEEEeCCcHHHHHHHHHHHHHh----ccCCcccccccCCCCCEEEEcCCCcHHHHHHHHHc-
Confidence 457899999999999999999999999999 58888876 4 5 899999999999987766655
Q ss_pred hCCcEEEEeccCCCCccChHHHHhhcc-CCceEEEEe-cccCcccccccHH---HHHHHH-HhcCCEEEEeccccccc--
Q psy15216 108 NDGFRVTYLKPKNNGLITLSQLEEKIC-SDTILVSVM-LVNNEIGVIQPIL---EIGELC-RSKGVIFHCDAAQAVGK-- 179 (2602)
Q Consensus 108 ~~G~~v~~v~~~~~~~ld~e~l~~~i~-~~tklv~i~-~~~npTG~~~~l~---~I~~la-~~~g~~livD~a~a~g~-- 179 (2602)
|++++.+++++++ +|+++|+++++ +++++|+++ +++||||.++|.+ +|+++| ++||+++|+|++|+...
T Consensus 154 --g~~~~~v~~~~~g-~d~~~l~~~l~~~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De~y~~~~~~ 230 (427)
T 3ppl_A 154 --GFEMISVPMNEDG-PDMDAVEELVKNPQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAYAVHTLT 230 (427)
T ss_dssp --TCEEEEEEEETTE-ECHHHHHHHTTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSS
T ss_pred --CCEEEEeCCCCCC-CCHHHHHHHHhcCCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEECCCcccccC
Confidence 9999999988765 99999999995 789988865 8899999999977 788888 99999999999987421
Q ss_pred ----ccccC-------CCCCccEEEeccccccCC-CCcEEEEEecCCCCcccceecCCCccccccccCcchhHHHHHHHH
Q psy15216 180 ----IDINI-------QNYKVDLMSFSAHKIYGP-KGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEA 247 (2602)
Q Consensus 180 ----~~~dl-------~~~~~D~~~~S~~K~~Gp-~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~a 247 (2602)
.++++ ...+.++++.|+||.++| -++||+++++++++.+..... .....++.....++..+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~G~r~G~~~~~~~l~~~~~~~~~-------~~~~~~~~~~q~~~~~~ 303 (427)
T 3ppl_A 231 DEFPEVIDIVGLGEAAGNPNRFWAFTSTSKITLAGAGVSFFLTSAENRKWYTGHAG-------IRGIGPNKVNQLAHARY 303 (427)
T ss_dssp SCCCCCCCHHHHHHHTTCTTSEEEEEESTTTSCTTSSCEEEECCHHHHHHHHHHHH-------HHCSCCCHHHHHHHHHH
T ss_pred CCCCCccchhhhhhccCCCCcEEEEechhhccCcCccEEEEEcCHHHHHHHHHHhh-------cccCCCCHHHHHHHHHH
Confidence 11121 133567999999996322 238999998877666654321 11223455555555455
Q ss_pred HHH---HHHhHHHHHHHHHHHHHHHHHHHhhccC---ceEEeCCCCCCCCceEEEEEcccChhHHHHHh--CCeEEcccc
Q psy15216 248 FRL---ARIEMKEELKRILFLQKRLYNGLMESIE---EIYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDIAVSSGS 319 (2602)
Q Consensus 248 l~~---~~~~~~~~~~~~~~l~~~l~~~L~~~~~---g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~v~~g~ 319 (2602)
++. ...++.+..+++.++++.+.+.|.+.++ ++.+..+.. ..++.+.++..+..++...| +||.++++.
T Consensus 304 l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~---g~~~~~~~~~~~~~~~~~~l~~~gv~v~~~g 380 (427)
T 3ppl_A 304 FGDAEGVRAVMRKHAASLAPKFNKVLEILDSRLAEYGVAQWTVPAG---GYFISLDVVPGTASRVAELAKEAGIALTGAG 380 (427)
T ss_dssp HCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEECCCSB---SSCEEEECSTTCHHHHHHHHHHTTEECCCTT
T ss_pred HhChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeCCCc---cEEEEEECCcchHHHHHHHHHHCCCEEecCc
Confidence 542 2344566666777777777777654333 466554432 34455566554566666666 799999954
Q ss_pred cCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 320 ACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 320 ~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
.|.+. + .....+++||+++.. +++++++++++|++.
T Consensus 381 ~~~~~-----------~--~~~~~~~~Ris~~~~-~~~~i~~~~~~l~~~ 416 (427)
T 3ppl_A 381 SSYPL-----------R--QDPENKNLRLAPSLP-PVEELEVAMDGVATC 416 (427)
T ss_dssp TTSGG-----------G--CCTTSCEEEECCSSS-CHHHHHHHHHHHHHH
T ss_pred CcCCC-----------C--CCCCCCeEEEECCCC-CHHHHHHHHHHHHHH
Confidence 44321 0 011248999999754 899999999999864
|
| >3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.85 E-value=4.5e-21 Score=252.58 Aligned_cols=333 Identities=18% Similarity=0.211 Sum_probs=229.1
Q ss_pred CCCCCCCHHHHHHHHHHHhhhc--CCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccc
Q psy15216 4 SATTPIDPRVVDKMIPYLRVQF--GNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHF 81 (2602)
Q Consensus 4 a~~~~~p~~v~~a~~~~l~~~~--~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~ 81 (2602)
++..+.++.+.+++.+.+...+ ++|+...+..........+.+++++++++|+++++|++++| |+|+.+++.++.
T Consensus 32 ~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~~sG-t~a~~~~~~~~~-- 108 (417)
T 3n0l_A 32 ASENFTLPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNCKFANVQPNSG-SQANQGVYAALI-- 108 (417)
T ss_dssp TTCCCCCHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSH-HHHHHHHHHHHS--
T ss_pred cccCCCCHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHHhCCCCcceEeccH-HHHHHHHHHHhc--
Confidence 3445779999999998875443 33432122222233445566888999999998777877776 899999999987
Q ss_pred cccCCCEEEEcCCCCcccHHHHHHH--HhCCcEEEEeccCCCCccChHHHHhhcc-CCceEEEEecccCcccccccHHHH
Q psy15216 82 YKKRGKHIITVQTEHKSVLDSIRKL--ENDGFRVTYLKPKNNGLITLSQLEEKIC-SDTILVSVMLVNNEIGVIQPILEI 158 (2602)
Q Consensus 82 ~~~~gd~Vlv~~~~~~s~~~~~~~~--~~~G~~v~~v~~~~~~~ld~e~l~~~i~-~~tklv~i~~~~npTG~~~~l~~I 158 (2602)
++||+|+++.++|+++...+..+ ...+..++.++++.++.+|+++|+++++ +++++|++++++| |...|+++|
T Consensus 109 --~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~--G~~~~l~~i 184 (417)
T 3n0l_A 109 --NPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVELDGRIDYEKVREIAKKEKPKLIVCGASAY--ARVIDFAKF 184 (417)
T ss_dssp --CTTCEEEEECC----------------CCSEEEEECCCTTSSCCHHHHHHHHHHHCCSEEEECCSSC--CSCCCHHHH
T ss_pred --CCCCEEEecccccccccchhhhhhhhcceeeeEeccCCCCCCcCHHHHHHHHHhcCCeEEEECCccc--CccCCHHHH
Confidence 89999999999999876543332 2235667777777778899999999998 6899999888775 999999999
Q ss_pred HHHHHhcCCEEEEecccccccc-----cccCCCCCccEEEecccc-ccCCCCcEEEEEe-cCCCCcccceecCCCccccc
Q psy15216 159 GELCRSKGVIFHCDAAQAVGKI-----DINIQNYKVDLMSFSAHK-IYGPKGIGALYIR-RNPRTRIEAQIHGGGHEYGL 231 (2602)
Q Consensus 159 ~~la~~~g~~livD~a~a~g~~-----~~dl~~~~~D~~~~S~~K-~~Gp~G~G~l~~~-~~~~~~l~~~~~g~~~~~~~ 231 (2602)
.++|++||+++|+|++|+.|.. +..+. +.|++++|+|| +.|++| |+++++ +++.+.+.+....+
T Consensus 185 ~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~--~~di~~~s~sK~l~g~~~-G~~~~~~~~~~~~~~~~~~~~------ 255 (417)
T 3n0l_A 185 REIADEIGAYLFADIAHIAGLVVAGEHPSPFP--YAHVVSSTTHKTLRGPRG-GIIMTNDEELAKKINSAIFPG------ 255 (417)
T ss_dssp HHHHHHHTCEEEEECTTTHHHHHTTSSCCCTT--TCSEEEEESSTTTCSCSC-EEEEESCHHHHHHHHHHHTTT------
T ss_pred HHHHHHcCCEEEEECccchhhhhcccCCCccc--cceEEEeeCccccCCCCe-eEEEECCHHHHHHHhhhhCCc------
Confidence 9999999999999999876543 22222 46899999999 546775 999998 56666665443211
Q ss_pred cccCcchhHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc--cChhHHHH
Q psy15216 232 RSGTLATHQIVGMGEAFRL-ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF--IEGESLLM 308 (2602)
Q Consensus 232 ~~gt~~~~~~~al~~al~~-~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~ 308 (2602)
..++++...+.++.+++.. ...++++..++..++++++.+.|.+ .++.+..... ..+...+.+.. .+...+..
T Consensus 256 ~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~--~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 331 (417)
T 3n0l_A 256 IQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMD--RKFKLVSDGT--DNHLVLMSFLDREFSGKDADL 331 (417)
T ss_dssp TCSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH--TTCEEGGGSC--SSSEEEEECTTSSSCHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh--CCceeccCCC--CceEEEEEcccCCCCHHHHHH
Confidence 2356777777777777764 2355688889999999999999987 6787765222 22344444432 24555655
Q ss_pred Hh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCC----CCHHHHHHHHHHHHhh
Q psy15216 309 AI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRF----TTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 309 ~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~----~t~edid~li~~L~~~ 369 (2602)
.| +||.+++....... .+......+|+++... .+++|+++++++|++.
T Consensus 332 ~l~~~gi~v~~~~~~~~~-------------~~~~~~~~~ri~~~~~~~~~~~~~~i~~~~~~l~~~ 385 (417)
T 3n0l_A 332 ALGNAGITANKNTVPGEI-------------RSPFITSGLRLGTPALTARGFKEKEMEIVSNYIADI 385 (417)
T ss_dssp HHHHTTEECEECCCTTCC-------------SCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHcCeEEeccccCCCC-------------cccCCCCeeEecCHHHhhCCCCHHHHHHHHHHHHHH
Confidence 55 69998865422110 0111236799987532 4689999999999874
|
| >1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A | Back alignment and structure |
|---|
Probab=99.85 E-value=3.1e-21 Score=252.24 Aligned_cols=306 Identities=17% Similarity=0.188 Sum_probs=203.1
Q ss_pred eEEEEEcCcccEEEEEEECCeEEEEeCCCCCccccEEEEEecCC-----------------cEEecHHHHhhhccCCCCc
Q psy15216 2034 VSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDG-----------------KIYVGKKAKITQNIDPKNT 2096 (2602)
Q Consensus 2034 ~vvGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~~~-----------------~~~vG~~A~~~~~~~p~~~ 2096 (2602)
..|+||+||+++.+++..++.|.. .+||+|+...+. ..+||++|... |.
T Consensus 6 ~~ivID~Gs~~~k~G~~~~~~p~~--------~~Ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~a~~~----~~-- 71 (418)
T 1k8k_A 6 PACVVDCGTGYTKLGYAGNTEPQF--------IIPSCIAIKESAKVGDQAQRRVMKGVDDLDFFIGDEAIEK----PT-- 71 (418)
T ss_dssp CCEEEEECSSEEEEEETTCSSCSE--------EEESCEEECC-----------CCCTTGGGCEEEGGGGTSC----TT--
T ss_pred CeEEEECCCCeEEEeeCCCCCCCC--------cCCceEEEECcccccccccccccccccccCeEEChHHHhc----CC--
Confidence 469999999999999875555532 356666654321 25666666432 10
Q ss_pred hhhhhhhcCCCCCCCCCCCCCeeeecCCCceEEEecCceeCHHHHHHHHHHHHHHHHHHhhccc--cceEEEeeCCCCCH
Q psy15216 2097 ISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNR--IFGAVITVPAYFND 2174 (2602)
Q Consensus 2097 ~~~~K~~lg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~--~~~~ViTVPa~f~~ 2174 (2602)
..+++-| ..+.+.--+....+++++.. +.++.. ...+|||+|++|+.
T Consensus 72 -~~~~~pi---------------------------~~G~i~d~d~~e~i~~~~~~---~~L~~~~~~~~vvit~p~~~~~ 120 (418)
T 1k8k_A 72 -YATKWPI---------------------------RHGIVEDWDLMERFMEQVIF---KYLRAEPEDHYFLLTEPPLNTP 120 (418)
T ss_dssp -SEEECCE---------------------------ETTEESCHHHHHHHHHHHHH---TTTCCCGGGCCEEEEECTTCCH
T ss_pred -CEEeccc---------------------------cCCEECCHHHHHHHHHHHHH---hccCCCCCCCcEEEEeCCCCCH
Confidence 1111111 11112212233444444432 234432 34799999999999
Q ss_pred HHHHHHHHHH-HHcCCceeEeechhHHHHHH-hhhc-cCCCCceEEEEEeCCceEEEEEEEEeCCEEEEEEEecCCCCch
Q psy15216 2175 IQRQFTKNAA-KLAGLNVLRLLNEPTSAAIA-YKLD-KNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGG 2251 (2602)
Q Consensus 2175 ~qr~~l~~Aa-~~AGl~~~~li~EP~AAAl~-y~~~-~~~~~~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG 2251 (2602)
.+|++|.+++ +.+|++.+.+++||+||+++ |... ....+.+.+|+|+||||||++++. ++. .+....++..+||
T Consensus 121 ~~r~~~~e~~fe~~g~~~~~l~~ep~aa~~a~~~~~~~~~~~~~glVvDiG~gtt~v~~v~--~G~-~~~~~~~~~~lGG 197 (418)
T 1k8k_A 121 ENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERTLTGTVIDSGDGVTHVIPVA--EGY-VIGSCIKHIPIAG 197 (418)
T ss_dssp HHHHHHHHHHHHTSCCSEEEEEEHHHHHHHHGGGSTTCCSCCCCEEEEEESSSCEEEEEEE--TTE-ECGGGCEEESCSH
T ss_pred HHHHHHHHHHHHhcCCCEEEEechHHHHhhhhhcccccCCCCCeEEEEEcCCCceEEEEeE--CCE-EcccceEEEeCcH
Confidence 9999999999 88999999999999999987 4211 011122679999999999999985 443 2333335679999
Q ss_pred hHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhcccc-----------------eEEEEEEe-cCCceEEEEcC
Q psy15216 2252 DDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQS-----------------SVKLNVKL-SDKKIVNITID 2313 (2602)
Q Consensus 2252 ~~~D~~l~~~l~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~-----------------~~~~~i~~-~~~~~~~~~it 2313 (2602)
+++|+.|.+++.+++. . .... .-...+|++|+.++... ...+.++- ..+....++++
T Consensus 198 ~~lt~~l~~~l~~~~~-~-~~~~---~~~~~~e~iK~~~~~v~~~~~~e~~~~~~~~~~~~~~~~lpd~~~~~~~~i~l~ 272 (418)
T 1k8k_A 198 RDITYFIQQLLRDREV-G-IPPE---QSLETAKAVKERYSYVCPDLVKEFNKYDTDGSKWIKQYTGINAISKKEFSIDVG 272 (418)
T ss_dssp HHHHHHHHHHHHTTCC-C-CCGG---GHHHHHHHHHHHHCCCCSCHHHHHHHHHHSGGGTCEEEEEECTTTCCEEEEEEC
T ss_pred HHHHHHHHHHHHhcCC-C-CCCH---HHHHHHHHHHHhhchhcccHHHHHHhhcccccccceeEECCCCCCCcccEEEeC
Confidence 9999999999986521 1 1111 11256778888775421 12344442 22345678999
Q ss_pred HHHH---HHHHHHHH------HHHHHHHHHHHHHcCC--CccccceEEEEeCccchHHHHHHHHhhcCC-----------
Q psy15216 2314 MKQF---FTITQHLV------NRTILLSSKALMDANL--TIKDINNVILVGGSTRMKHIHEGVSNFFKT----------- 2371 (2602)
Q Consensus 2314 r~~f---e~l~~~~~------~~~~~~i~~~l~~~~~--~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~----------- 2371 (2602)
+++| |.+++|.+ ..+.++|.++|+.+.. ....++.|+|+||+|++|.++++|++.++.
T Consensus 273 ~erf~~~E~lF~P~~~~~~~~~~i~~~i~~si~~~~~~~~~~l~~~IvL~GG~s~~pg~~~rl~~el~~~~~~~~~~~~~ 352 (418)
T 1k8k_A 273 YERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEE 352 (418)
T ss_dssp THHHHHHHTTTCGGGTCTTCCCCHHHHHHHHHHHSCGGGTTHHHHCEEEESGGGCSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhhCcHhhCCCccCCCCCCCCHHHHHHHHHHcCCHHHHHHHHhceEEeCCccccccHHHHHHHHHHHhhccccccccc
Confidence 9999 66666643 5688889999998753 345578899999999999999999876531
Q ss_pred -------------cccCCCCccchhhhHHHHHhH
Q psy15216 2372 -------------TLLTSIDPDKAVVFGAAIQAN 2392 (2602)
Q Consensus 2372 -------------~~~~~~~p~~aVa~GAa~~a~ 2392 (2602)
++..+.+|..++.+||+++|.
T Consensus 353 ~~~~~~~p~~~~v~v~~~~~~~~~~w~Ggsilas 386 (418)
T 1k8k_A 353 LSGGRLKPKPIDVQVITHHMQRYAVWFGGSMLAS 386 (418)
T ss_dssp HC----CCCCCCCCEECCTTCTTHHHHHHHHHTT
T ss_pred cccccCCCCceeEEEeCCCccccceeHhHHHHHc
Confidence 234456888999999999986
|
| >1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=5e-21 Score=245.35 Aligned_cols=313 Identities=15% Similarity=0.166 Sum_probs=210.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhccc
Q psy15216 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAH 80 (2602)
Q Consensus 1 Ld~a~~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~ 80 (2602)
|+++.++++++.+.+++.+.+.. . .. +...+...++|+++|+++|.+ ++++++|+|+|+.+++.++.
T Consensus 8 ~~~~~~~~p~~~~~~a~~~~~~~-----~---~~--y~~~~~~~~l~~~la~~~g~~--~~~~~~~gt~a~~~~~~~~~- 74 (347)
T 1jg8_A 8 LRSDTVTKPTEEMRKAMAQAEVG-----D---DV--YGEDPTINELERLAAETFGKE--AALFVPSGTMGNQVSIMAHT- 74 (347)
T ss_dssp CSCGGGCCCCHHHHHHHHTCCCC-----C---GG--GTCCHHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHHC-
T ss_pred eccccCCCCCHHHHHHHhcCCCC-----C---cc--cCCChHHHHHHHHHHHHhCCc--eEEEecCcHHHHHHHHHHhc-
Confidence 56667777788888877654211 0 11 111235678999999999975 67889999999999988876
Q ss_pred ccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccC------CceEEEEecccCcc-cccc
Q psy15216 81 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS------DTILVSVMLVNNEI-GVIQ 153 (2602)
Q Consensus 81 ~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~------~tklv~i~~~~npT-G~~~ 153 (2602)
++||+|++++++|++.......+...|++++.+ .++++.+|+++|++++++ +|++|++++|+||| |.++
T Consensus 75 ---~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v-~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~npt~G~~~ 150 (347)
T 1jg8_A 75 ---QRGDEVILEADSHIFWYEVGAMAVLSGVMPHPV-PGKNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVV 150 (347)
T ss_dssp ---CTTCEEEEETTCHHHHSSTTHHHHHTCCEEEEE-CEETTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCC
T ss_pred ---CCCCEEEEcCcchhhhccccchhhccCeEEEEe-cCCCCccCHHHHHHHhccccccccCceEEEEeccccccCCccC
Confidence 799999999999977443222334459999988 555677899999999975 68999999999999 9998
Q ss_pred cH---HHHHHHHHhcCCEEEEeccccccc---ccccCCC--CCccEEEeccccccCCCCcE-EEEEecCCCCcccceecC
Q psy15216 154 PI---LEIGELCRSKGVIFHCDAAQAVGK---IDINIQN--YKVDLMSFSAHKIYGPKGIG-ALYIRRNPRTRIEAQIHG 224 (2602)
Q Consensus 154 ~l---~~I~~la~~~g~~livD~a~a~g~---~~~dl~~--~~~D~~~~S~~K~~Gp~G~G-~l~~~~~~~~~l~~~~~g 224 (2602)
|. ++|.++|++||+++++|++|..+. .+.+... .+.|.+++|+||++|++ .| +++.++++++.+.+....
T Consensus 151 ~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~~-~G~~~~~~~~~~~~~~~~~~~ 229 (347)
T 1jg8_A 151 PLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAP-VGSVVVGDRDFIERARKARKM 229 (347)
T ss_dssp CHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTCSEEEEESSSTTCCS-SCEEEEECHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCCChHHhcccccEEEEecccccCCC-ceEEEEcCHHHHHHHHHHHHH
Confidence 85 578899999999999999985532 1122211 24688888999977644 45 566676666555432211
Q ss_pred CCccccccccCc--chhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEc--c
Q psy15216 225 GGHEYGLRSGTL--ATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN--F 300 (2602)
Q Consensus 225 ~~~~~~~~~gt~--~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~--~ 300 (2602)
+ .++. +....++...+++. ..+. .++..++++++.+.|.+ . ++.+..++. ..+++.+.++ .
T Consensus 230 ~-------~~~~~~~~~~~~~~~~~l~~---~~~~-~~~~~~~~~~l~~~L~~-~-~~~~~~~~~--~~~~~~~~~~~~~ 294 (347)
T 1jg8_A 230 L-------GGGMRQAGVLAAAGIIALTK---MVDR-LKEDHENARFLALKLKE-I-GYSVNPEDV--KTNMVILRTDNLK 294 (347)
T ss_dssp H-------TCCCSSTHHHHHHHHHHHHH---SSTT-HHHHHHHHHHHHHHHHH-H-TCBCCGGGC--CSSEEEEECTTSS
T ss_pred c-------CCchhHHHHHHHHHHHHHHH---HHHH-HHHHHHHHHHHHHHHHh-c-CceeccCCC--cceEEEEEccccc
Confidence 0 1111 11122222234432 1122 22334566778888876 3 555421111 1234445555 2
Q ss_pred cChhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 301 IEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 301 ~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
.+..++.+.| +||.++++. .+++|++++.+++++|+++++++|++.
T Consensus 295 ~~~~~~~~~l~~~gi~v~~~~-----------------------~~~iRl~~~~~~~~e~i~~~~~~l~~~ 342 (347)
T 1jg8_A 295 VNAHGFIEALRNSGVLANAVS-----------------------DTEIRLVTHKDVSRNDIEEALNIFEKL 342 (347)
T ss_dssp SCHHHHHHHHHHHTEECEEEE-----------------------TTEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCEEecCC-----------------------CCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 4566777776 688887531 167999999999999999999999864
|
| >2qq4_A Iron-sulfur cluster biosynthesis protein ISCU; zinc binding, iron-sulfur cluster binding, three conserved Cys, three beta strands; 1.85A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.85 E-value=6.8e-22 Score=209.39 Aligned_cols=90 Identities=36% Similarity=0.596 Sum_probs=84.9
Q ss_pred hhhhhhHhhhhcccCCCCCCCCCCCCCcceeeeeCCCCcccEEEEEEEEcCCCceEeeeeeccccchhHhhHHHHHHHHc
Q psy15216 371 FFMSYSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKTYGCGSAIASSSLVTEWVK 450 (2602)
Q Consensus 371 ~~~~y~~~~~~hy~~p~n~g~~~~~~~~~~~~~~~~~~cgd~~~~~~~~~~~~~i~~~~~~~~gc~~~~a~~s~~~~~~~ 450 (2602)
+.++|+++++|||+||||+|.+++++ ++++++||+|||.|+|+|+|+ +|+|+|++|+|+||+++|||||++||+++
T Consensus 4 l~~lY~~~Ildh~~nP~n~G~l~~~~---~~~~~~np~CGD~i~l~l~v~-~~~I~d~~f~~~GCais~ASaS~~te~i~ 79 (138)
T 2qq4_A 4 LDELYREILLDHYQSPRNFGVLPQAT---KQAGGMNPSCGDQVEVMVLLE-GDTIADIRFQGQGCAISTASASLMTEAVK 79 (138)
T ss_dssp HHHHHHHHHHHHHHSCTTBSCCTTCS---EEEEEECTTTCCEEEEEEEEE-TTEEEEEEEEEECCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCCCC---eEEeeCCCCCCCEEEEEEEEC-CCEEEEEEEEecCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999999777 889999999999999999994 78999999999999999999999999999
Q ss_pred CCChhhhhhccccc
Q psy15216 451 GKTLDEAMSIKNTD 464 (2602)
Q Consensus 451 g~~~~e~~~i~~~~ 464 (2602)
|||++||..+++..
T Consensus 80 Gkt~~ea~~i~~~~ 93 (138)
T 2qq4_A 80 GKKVAEALELSRKF 93 (138)
T ss_dssp TSBHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHH
Confidence 99999999999654
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.9e-20 Score=246.34 Aligned_cols=293 Identities=12% Similarity=0.070 Sum_probs=213.0
Q ss_pred HHHHHHHHHHHhCCCCCcEEEeCCHHHHH--HHHHHhcccccccC------------CCEEEEcCCCCcccHHHHHHHHh
Q psy15216 43 IEKARNEVAQLIYADPREIIWTSGATESN--NLAIKGAAHFYKKR------------GKHIITVQTEHKSVLDSIRKLEN 108 (2602)
Q Consensus 43 ~~~~r~~lA~~~g~~~~~Iv~t~g~T~al--~~~~~~l~~~~~~~------------gd~Vlv~~~~~~s~~~~~~~~~~ 108 (2602)
..++|+++|+++++++++|++|+|+++++ .+++.++. .+ +|+|+++.|.|+++...++..
T Consensus 78 ~~~lr~~ia~~~~~~~~~i~~t~G~~~al~l~~~~~~l~----~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~~~~-- 151 (422)
T 3d6k_A 78 IADIRELWAEALGLPADLVVAQDGSSLNIMFDLISWSYT----WGNNDSSRPWSAEEKVKWLCPVPGYDRHFTITEHF-- 151 (422)
T ss_dssp CHHHHHHHHHHHTCCGGGEEECSSCHHHHHHHHHHHHHH----HCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHH--
T ss_pred CHHHHHHHHHHhCCChhHEEEecchHHHHHHHHHHHHhc----CcccccccccccCCCCEEEEeCCccHHHHHHHHHc--
Confidence 57889999999999999999999999997 67777776 34 458999999999988777766
Q ss_pred CCcEEEEeccCCCCccChHHHHhhccC-CceEEE-EecccCcccccccHH---HHHHHHH-hcCCEEEEeccccc---cc
Q psy15216 109 DGFRVTYLKPKNNGLITLSQLEEKICS-DTILVS-VMLVNNEIGVIQPIL---EIGELCR-SKGVIFHCDAAQAV---GK 179 (2602)
Q Consensus 109 ~G~~v~~v~~~~~~~ld~e~l~~~i~~-~tklv~-i~~~~npTG~~~~l~---~I~~la~-~~g~~livD~a~a~---g~ 179 (2602)
|++++.++.++++ +|+++|++++++ ++++|+ +++|+||||.++|.+ +|+++|+ +||+++|+|++|+. ..
T Consensus 152 -g~~~~~v~~~~~g-~d~~~l~~~l~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~ 229 (422)
T 3d6k_A 152 -GFEMINVPMTDEG-PDMGVVRELVKDPQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSD 229 (422)
T ss_dssp -TCEEEEEEEETTE-ECHHHHHHHHTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSS
T ss_pred -CCEEEecCCCCCC-CCHHHHHHHHhcCCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEECCccccccCC
Confidence 9999999987665 999999999985 789888 799999999999977 7777888 89999999999973 11
Q ss_pred c---cccC-------CCCCccEEEeccccccCCCC--cEEEEEecCCCCcccceecCCCccccccccCcchhHHHHHHHH
Q psy15216 180 I---DINI-------QNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEA 247 (2602)
Q Consensus 180 ~---~~dl-------~~~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~a 247 (2602)
. ...+ ...+.++++.|+||. +.+| +||+++++++++.+..... ...++++.+...++.++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~-~~~GlriG~~~~~~~l~~~l~~~~~-------~~~~~~~~~~q~a~~~~ 301 (422)
T 3d6k_A 230 EFPIVHNVIEFAQAAGNPNRFWFMSSTSKI-THAGSGVSFFASSKENIEWYASHAN-------VRGIGPNKLNQLAHAQF 301 (422)
T ss_dssp CCCCCCCHHHHHHHTTCTTCEEEEEESTTT-SCTTSSCEEEECCHHHHHHHHHHHH-------HHCSCCCHHHHHHHHHH
T ss_pred CCCCCcChhhHhhccCCCCcEEEEcChhhh-cCcccceEEEEeCHHHHHHHHHHHH-------hhcCCCCHHHHHHHHHH
Confidence 1 1112 233467899999997 4445 8999999877666654321 11234566666666667
Q ss_pred HHH---HHHhHHHHHHHHHHHHHHHHHHHhhcc---CceEEeCCCCCCCCceEEEEEcccChhHHHHHh--CCeEEcc-c
Q psy15216 248 FRL---ARIEMKEELKRILFLQKRLYNGLMESI---EEIYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDIAVSS-G 318 (2602)
Q Consensus 248 l~~---~~~~~~~~~~~~~~l~~~l~~~L~~~~---~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~v~~-g 318 (2602)
|+. ...++++.++++++.++++.+.|.+.+ +++.+..+.. ..++++.++..+...+...+ +||.+++ |
T Consensus 302 l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~---g~~~~~~~~~~~~~~~~~~l~~~gV~v~~~g 378 (422)
T 3d6k_A 302 FGDVAGLKAHMLKHAASLAPKFERVLEILDSRLSEYGVAKWTSPTG---GYFISVDVVPGTASRVVELAKEAGIALTGAG 378 (422)
T ss_dssp HCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEECCCSB---SSCEEEEESTTCHHHHHHHHHHTTEECCCTT
T ss_pred HhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCceEEeCCCc---ceEEEEECCCCCHHHHHHHHHHCCeEEEcCc
Confidence 753 124566667777777777777775532 2356554422 23455566543455555555 7999998 4
Q ss_pred ccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 319 SACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 319 ~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
..|..+ . ....+++|||++. ++++++++++++|++.
T Consensus 379 ~~f~~~------------~--~~~~~~iRis~~~-~~~e~i~~~~~~l~~~ 414 (422)
T 3d6k_A 379 SSFPLH------------N--DPNNENIRLAPSL-PPVAELEVAMDGFATC 414 (422)
T ss_dssp TTSGGG------------C--CTTSCEEEECCSS-SCHHHHHHHHHHHHHH
T ss_pred cccCCC------------C--CCCCCeEEEecCC-CCHHHHHHHHHHHHHH
Confidence 445311 0 0113789999987 8999999999999964
|
| >4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=4.1e-20 Score=237.75 Aligned_cols=198 Identities=17% Similarity=0.084 Sum_probs=158.0
Q ss_pred HHHHHHHHHHHHcCCceeEeechhHHHHHHhhhccCCCCceEEEEEeCCceEEEEEEEEeCCEEEEEEEecCCCCchhHH
Q psy15216 2175 IQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDF 2254 (2602)
Q Consensus 2175 ~qr~~l~~Aa~~AGl~~~~li~EP~AAAl~y~~~~~~~~~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~ 2254 (2602)
...+.+.+|++.|||++..++.||.|||++|.... ..+..++|+|+||||||+++++ ++.+.. .++.++||++|
T Consensus 168 ~~v~n~~~~~~~AGL~v~~lv~ep~Aaa~a~l~~~-~~~~gv~vvDiGggttdisi~~--~g~~~~---~~~i~~GG~~i 241 (419)
T 4a2a_A 168 KVYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLTTP-EKDRGVVVVNLGYNFTGLIAYK--NGVPIK---ISYVPVGMKHV 241 (419)
T ss_dssp HHHHHHHHHHHTTSCSCEEEEEHHHHHHHHHCCHH-HHHHCEEEEEECSSSEEEEEEE--TTEEEE---EEEESCCHHHH
T ss_pred HHHHHHHHHHHHcCCcEEEEEEHHHHHHHHhhccc-cccCCEEEEEECCCcEEEEEEE--CCEEEE---EEecccHHHHH
Confidence 46688999999999999999999999999885332 2345789999999999999987 454432 34589999999
Q ss_pred HHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhccc-----ceEEEEEEecCCceEEEEcCHHHHHHHHHHHHHHHH
Q psy15216 2255 DYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQ-----SSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNRTI 2329 (2602)
Q Consensus 2255 D~~l~~~l~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~-----~~~~~~i~~~~~~~~~~~itr~~fe~l~~~~~~~~~ 2329 (2602)
|+.|...+.. ....||++|+.++.. .+..+.++..++ ....+++|++|+++++|.++++.
T Consensus 242 t~dIa~~l~~--------------~~~~AE~iK~~~g~a~~~~~~~~~i~v~~~~~-~~~~~is~~~l~~ii~p~veei~ 306 (419)
T 4a2a_A 242 IKDVSAVLDT--------------SFEESERLIITHGNAVYNDLKEEEIQYRGLDG-NTIKTTTAKKLSVIIHARLREIM 306 (419)
T ss_dssp HHHHHHHHTC--------------CHHHHHHHHHHHCCSCCTTCCCCEEEEECTTS-CSEEEEEHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCC--------------CHHHHHHHHHHhccCcccCCCCceEEEeecCC-ccceEEcHHHHHHHHHHHHHHHH
Confidence 9999875532 247899999998752 345667765544 35688999999999999999999
Q ss_pred HHHHHHHHHcCC------CccccceEEEEeCccchHHHHHHHHhhcCCccc--C-----C----------CCccchhhhH
Q psy15216 2330 LLSSKALMDANL------TIKDINNVILVGGSTRMKHIHEGVSNFFKTTLL--T-----S----------IDPDKAVVFG 2386 (2602)
Q Consensus 2330 ~~i~~~l~~~~~------~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~~--~-----~----------~~p~~aVa~G 2386 (2602)
+.+.+.|+.++. ....++.|+|+||+|++|.+++++++.|+.++. . | .+|..+++.|
T Consensus 307 ~~V~~~L~~~~~~~p~~~~~~~~~~IvLtGG~s~lpgl~e~~~~~~g~~vri~~~~~~~p~~~~~~~~~~~~P~~~t~~G 386 (419)
T 4a2a_A 307 SKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATEVFKSPVRTGCYANSDRPSIINADEVANDPSFAAAFG 386 (419)
T ss_dssp HHHHHHHHHHTTCC--------TTCEEEESGGGGSTTHHHHHHHHHTSCEEECCGGGSSSCCCBTCHHHHTCGGGHHHHH
T ss_pred HHHHHHHHHcCCCcccccccccCCEEEEECchhchhhHHHHHHHHHCCCeEEEecCCCCchhccCcccccCCchHHHHHH
Confidence 999999999987 345689999999999999999999999987543 2 2 4899999999
Q ss_pred HHHHhHH
Q psy15216 2387 AAIQANF 2393 (2602)
Q Consensus 2387 Aa~~a~~ 2393 (2602)
.++++..
T Consensus 387 l~~~~~~ 393 (419)
T 4a2a_A 387 NVFAVSE 393 (419)
T ss_dssp TTCC---
T ss_pred HHHHHhh
Confidence 9998854
|
| >2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.7e-20 Score=245.79 Aligned_cols=332 Identities=13% Similarity=0.188 Sum_probs=216.5
Q ss_pred CCCCCCCHHHHHHHHHHHhhhc--CCCCCCCcchhhhH-HHHHHHHHHHHHHHhCCCCCc---EEEeCCHHHHHHHHHHh
Q psy15216 4 SATTPIDPRVVDKMIPYLRVQF--GNPASRNHIYGWTA-EKAIEKARNEVAQLIYADPRE---IIWTSGATESNNLAIKG 77 (2602)
Q Consensus 4 a~~~~~p~~v~~a~~~~l~~~~--~~p~~~~~~~~~~~-~~~~~~~r~~lA~~~g~~~~~---Iv~t~g~T~al~~~~~~ 77 (2602)
++..++++.|++++...+.+.+ +||+. .+..|... ..+.+.+++++++++|++++. .++++|+|+|+..++.+
T Consensus 61 as~n~~~~~V~eA~~~~l~~~y~~G~~g~-r~~~G~~~~~~lE~~a~~~~a~l~g~~~~~~~~~v~~~sGt~An~~al~a 139 (490)
T 2a7v_A 61 ASENFCSRAALEALGSCLNNKYSEGYPGK-RYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTA 139 (490)
T ss_dssp TTCCCCCHHHHHHHTSGGGTCCCCC-------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHcCCCccCCCcc-cccCccHHHHHHHHHHHHHHHHHcCCCcccCceEEeCCchHHHHHHHHHH
Confidence 4566899999999999887765 56665 22223322 234446779999999998753 46677899999999999
Q ss_pred cccccccCCCEEEEcCCCCcccHHHHH-----HHHhCCc--EEEEeccC-CCCccChHHHHhhcc-CCceEEEEecccCc
Q psy15216 78 AAHFYKKRGKHIITVQTEHKSVLDSIR-----KLENDGF--RVTYLKPK-NNGLITLSQLEEKIC-SDTILVSVMLVNNE 148 (2602)
Q Consensus 78 l~~~~~~~gd~Vlv~~~~~~s~~~~~~-----~~~~~G~--~v~~v~~~-~~~~ld~e~l~~~i~-~~tklv~i~~~~np 148 (2602)
+. +|||+|+++++.|.++..... .+...|. +++.++++ +++.+|+++|++++. .++++|+++.++||
T Consensus 140 l~----~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~~vd~~~~~iD~d~le~~l~~~~~klIi~~~s~~~ 215 (490)
T 2a7v_A 140 LL----QPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTSAYA 215 (490)
T ss_dssp HC----CSCEECCC-------------------------------CCBCTTTCSBCHHHHHHHHHHHCCSEEEECCSSCC
T ss_pred Hc----CCCCEecccCccccccccchhhhcchhHHHcCCeEEEEecccccccCCcCHHHHHHHHhhcCCcEEEEcCCCCC
Confidence 98 899999999999876432111 1111243 34455555 468899999999986 47899988887776
Q ss_pred ccccccHHHHHHHHHhcCCEEEEecccccccc-----cccCCCCCccEEEecccc-ccCCCCcEEEEEecCCC-------
Q psy15216 149 IGVIQPILEIGELCRSKGVIFHCDAAQAVGKI-----DINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPR------- 215 (2602)
Q Consensus 149 TG~~~~l~~I~~la~~~g~~livD~a~a~g~~-----~~dl~~~~~D~~~~S~~K-~~Gp~G~G~l~~~~~~~------- 215 (2602)
...|+++|.++|++||+++++|++|+.|.. +..+. ++|++++|+|| +.||.| |++++++++.
T Consensus 216 --~~~dl~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~~~~--~aDiv~~S~hK~l~Gp~G-G~i~~~~~~~~~~~~~~ 290 (490)
T 2a7v_A 216 --RLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFK--HADIVTTTTHKTLRGARS-GLIFYRKGVKAVDPKTG 290 (490)
T ss_dssp --SCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGG--TCSEEEEESSGGGCSCSC-EEEEEECSEEEEETTTE
T ss_pred --CcccHHHHHHHHHHcCCEEEEccccccccccCCcCCCCCC--CCCEEEECCcccCccccc-hheeeccchhccccccc
Confidence 567999999999999999999999976532 22222 57999999999 558887 9999987521
Q ss_pred --------CcccceecCCCccccccccCcchhHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCC
Q psy15216 216 --------TRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLAR-IEMKEELKRILFLQKRLYNGLMESIEEIYINGDM 286 (2602)
Q Consensus 216 --------~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~-~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~ 286 (2602)
+.++..... ...|+|+.+.++++.+|+.... ..+++..++..++++++.+.|.+ .|+.+..+.
T Consensus 291 ~~~~~~l~~~i~~~~~~------g~qggp~~~~iaAla~Al~~~~~~~~~~~~~~~~~na~~L~~~L~~--~G~~v~~~~ 362 (490)
T 2a7v_A 291 REIPYTFEDRINFAVFP------SLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLE--RGYSLVSGG 362 (490)
T ss_dssp EEEECCCHHHHHHHHTT------TTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHH--TTCEEGGGS
T ss_pred chhhHHHHHHHHHHhcc------cCCCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH--cCcEEecCC
Confidence 122211111 1235678888888888887543 45688889999999999999988 488887532
Q ss_pred CCCCCceEEEEEcc--cChhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEec----CCCCCHHH
Q psy15216 287 NNRIPHNLNISFNF--IEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTI----GRFTTEKE 358 (2602)
Q Consensus 287 ~~~~~~~~~~~~~~--~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~----~~~~t~ed 358 (2602)
.. .+.+.+.+.. .+...+...| .||.+..+..+... .......||++. +...+++|
T Consensus 363 t~--t~lv~vdl~~~g~~~~~~~~~L~~~GI~v~~~~~p~d~--------------~p~~~~~iRig~~a~t~~g~~~~d 426 (490)
T 2a7v_A 363 TD--NHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDR--------------SAITPGGLRLGAPALTSRQFREDD 426 (490)
T ss_dssp CS--SSEEEEECTTTTCCHHHHHHHHHHTTEECEEECCTTCC--------------CSSSCSEEEEESHHHHHTTCCHHH
T ss_pred CC--CeEEEEEeCCCCCCHHHHHHHHHhCCeEEecCccCCCC--------------CCCCCCceEecccccccCCCCHHH
Confidence 21 3445555542 3556666556 79998865322110 001236799965 33468999
Q ss_pred HHHHHHHHHhh
Q psy15216 359 IDFTIKLLKMK 369 (2602)
Q Consensus 359 id~li~~L~~~ 369 (2602)
+++++++|.+.
T Consensus 427 ~~~~~~~i~~~ 437 (490)
T 2a7v_A 427 FRRVVDFIDEG 437 (490)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999874
|
| >1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=2.3e-20 Score=240.16 Aligned_cols=308 Identities=14% Similarity=0.185 Sum_probs=217.9
Q ss_pred CCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCC
Q psy15216 1403 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRG 1482 (2602)
Q Consensus 1403 ~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~g 1482 (2602)
...++.+++++.+.+.. +.. .+ .......++++++++++| .+.++++|+|+|+|+..++.++. ++|
T Consensus 18 ~~~~~~v~~a~~~~~~~---~~~--~~----~~~~~~~~l~~~la~~~g-~~~~v~~~~~gt~a~~~al~~~~----~~g 83 (356)
T 1v72_A 18 AGASPEVAQALVKHSSG---QAG--PY----GTDELTAQVKRKFCEIFE-RDVEVFLVPTGTAANALCLSAMT----PPW 83 (356)
T ss_dssp CCCCHHHHHHHHHTTSS---CCC--ST----TCSHHHHHHHHHHHHHHT-SCCEEEEESCHHHHHHHHHHTSC----CTT
T ss_pred cCCCHHHHHHHHhhccC---ccc--cc----ccchHHHHHHHHHHHHhC-CCCcEEEeCCccHHHHHHHHHhc----CCC
Confidence 46678899998876521 111 11 123457889999999999 44459999999999999999876 799
Q ss_pred CEEEEcCCCCcchHHH--HHHHHhC-CcEEEEeccCCCCCcChhHHHh-hccC-------CceEEEEeccccccccccC-
Q psy15216 1483 KHIITVQTEHKSVLDS--IRKLEND-GFRVTYLKPKNNGLITLSQLEE-KICS-------DTILVSVMLVNNEIGVIQP- 1550 (2602)
Q Consensus 1483 d~Vlv~~~~~~s~~~~--~~~~~~~-G~~v~~v~~~~~~~id~d~l~~-~i~~-------~t~lv~l~~~~n~tG~~~~- 1550 (2602)
|+|+++++.|+++... +... . |++++.++.+ ++.+|+++|++ ++++ ++++|++++++| ||.++|
T Consensus 84 d~vi~~~~~~~~~~~~~~~~~~--~~g~~~~~v~~~-~~~~d~~~l~~~~i~~~~~~~~~~~~~v~~~~~~~-tG~~~~~ 159 (356)
T 1v72_A 84 GNIYCHPASHINNDECGAPEFF--SNGAKLMTVDGP-AAKLDIVRLRERTREKVGDVHTTQPACVSITQATE-VGSIYTL 159 (356)
T ss_dssp EEEEECTTSHHHHSSTTHHHHH--TTSCEEEECCCG-GGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCT-TSCCCCH
T ss_pred CEEEEcCccchhhhhchHHHHH--hCCcEEEEecCC-CCeEcHHHHHHHhhhcchhhccCCceEEEEEcCCC-CCccCCH
Confidence 9999999998876543 3222 2 8899998875 46799999999 9986 689999999876 999665
Q ss_pred --hHHHHHHhhhcCCEEEEecccccCcc---cccCCC----CCccEEEEccccccCCCceEEEEEecCCCCccccccccC
Q psy15216 1551 --ILEIGELCRSKGVIFHCDAAQAVGKI---DINIQN----YKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGG 1621 (2602)
Q Consensus 1551 --l~~I~~ia~~~gi~vivD~a~~~g~~---~~~l~~----~~~D~~v~S~~K~~gp~G~G~l~~~~~~~~~l~~~~~g~ 1621 (2602)
+++|.++|++||+++|+|++|+.+.. ...... .+.|++++|+||+++|.|+|+++.++++++.+......
T Consensus 160 ~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~g~~~G~g~~~~~~~~~~~~~~~~~~- 238 (356)
T 1v72_A 160 DEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKNGVLAAEAIVLFNTSLATEMSYRRKR- 238 (356)
T ss_dssp HHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGGTCSSCEEEEESSGGGHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCCHHHhhhhhcCCEEEEecccCCCcCccEEEEECHHHHhhHHHHhhc-
Confidence 88999999999999999999864311 111111 35789999999985677778998887766655432210
Q ss_pred CccccCCCCCcchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecCCcH
Q psy15216 1622 GHEYGLRSGTLATHQIVGMGEAFRLAR-IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGE 1700 (2602)
Q Consensus 1622 ~~~~~~~~gt~~~~~~~al~~aL~~~~-~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~ 1700 (2602)
.++.......+...++..+. ..+.+..++..++++++.+.|.+ ++++.+..+.. .....+.++ .
T Consensus 239 -------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~---~~~~~~~~~----~ 303 (356)
T 1v72_A 239 -------AGHLSSKMRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEG-LGGVEVLGGTE---ANILFCRLD----S 303 (356)
T ss_dssp -------TTCCCSSTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTT-CTTEEEESCCC---SSEEEEEEC----H
T ss_pred -------cCchhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh-CCCcEEccCCC---ccEEEEEcC----H
Confidence 11111111222223343322 23456677888999999999987 68888865422 223333333 3
Q ss_pred HHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1701 SLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1701 ~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
++...| +||.+++|. +. .+++|++++..+|.+++++++++|++.
T Consensus 304 ~~~~~l~~~gi~v~~g~-~~--------------------~~~iRi~~~~~~~~~~i~~~~~~l~~~ 349 (356)
T 1v72_A 304 AMIDALLKAGFGFYHDR-WG--------------------PNVVRFVTSFATTAEDVDHLLNQVRLA 349 (356)
T ss_dssp HHHHHHHHTTCBCBCSS-SS--------------------TTEEEEECCTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCeEEeccc-cC--------------------CCeEEEEecCCCCHHHHHHHHHHHHHH
Confidence 555555 788888765 21 178999999999999999999999873
|
| >2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.85 E-value=5.1e-20 Score=241.40 Aligned_cols=311 Identities=14% Similarity=0.107 Sum_probs=208.7
Q ss_pred chhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHHH-HHhCCcE
Q psy15216 34 IYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDGFR 112 (2602)
Q Consensus 34 ~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~-~~~~G~~ 112 (2602)
.+++...+..+++++++++++|.+ ..++++++++|++.++.++. ++||+|+++.++|+++...+.. ++..|++
T Consensus 51 ~y~~~~~~~~~~l~~~la~~~g~~--~~v~~~sGt~A~~~~l~~~~----~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~ 124 (421)
T 2ctz_A 51 IYSRIMNPTVDVLEKRLAALEGGK--AALATASGHAAQFLALTTLA----QAGDNIVSTPNLYGGTFNQFKVTLKRLGIE 124 (421)
T ss_dssp SCBTTBCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHC----CTTCEEEECSCCCHHHHHHHHTHHHHTTCE
T ss_pred cccCCCChHHHHHHHHHHHHhCCC--ceEEecCHHHHHHHHHHHHh----CCCCEEEEeCCCchHHHHHHHHHHHHcCCE
Confidence 333333456789999999999976 34556667999999999886 7999999999999998887743 3567999
Q ss_pred EEEe-ccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHhcCCEEEEeccc-ccccccccCCCCCcc
Q psy15216 113 VTYL-KPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQ-AVGKIDINIQNYKVD 190 (2602)
Q Consensus 113 v~~v-~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~~g~~livD~a~-a~g~~~~dl~~~~~D 190 (2602)
++++ +.+ |+++++++++++|++|++++++||||.+.|+++|.++|++||+++|+|++| +.|... .....++|
T Consensus 125 ~~~~~~~~-----d~~~l~~~i~~~~~~v~~~~~~n~~G~~~~l~~i~~~a~~~g~~livD~~~~~~g~~~-~~~~~~~D 198 (421)
T 2ctz_A 125 VRFTSREE-----RPEEFLALTDEKTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGMGGYLL-RPLAWGAA 198 (421)
T ss_dssp EEECCTTC-----CHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGGGGTSC-CGGGGTCS
T ss_pred EEEECCCC-----CHHHHHHhhccCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCcccccccC-CccccCCe
Confidence 9999 754 899999999999999999999999999999999999999999999999999 877522 22245789
Q ss_pred EEEeccccccCCCC--cEEEEEec---CC----CCcccceecCCCccc--------------ccc----cc-CcchhHHH
Q psy15216 191 LMSFSAHKIYGPKG--IGALYIRR---NP----RTRIEAQIHGGGHEY--------------GLR----SG-TLATHQIV 242 (2602)
Q Consensus 191 ~~~~S~~K~~Gp~G--~G~l~~~~---~~----~~~l~~~~~g~~~~~--------------~~~----~g-t~~~~~~~ 242 (2602)
++++|+||++|++| +|++++.+ ++ .+.+.+...++.... +++ .| ..+....+
T Consensus 199 i~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~ 278 (421)
T 2ctz_A 199 LVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARVDGLRDQGQALGPFEAW 278 (421)
T ss_dssp EEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHH
T ss_pred EEEECCcccccCCCCcEEEEEEeccchhhcccchhhhccccchhhhhhhhhhcchhHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 99999999777554 67777752 22 223444333322110 000 11 22222222
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCC---------------CCCCceEEEEEccc--ChhH
Q psy15216 243 GMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMN---------------NRIPHNLNISFNFI--EGES 305 (2602)
Q Consensus 243 al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~---------------~~~~~~~~~~~~~~--~~~~ 305 (2602)
.+..+++ .+....++..++++++.+.|.+ .|++..+..+. .....++.|.+... +...
T Consensus 279 ~~~~~l~----~l~~r~~~~~~~a~~l~~~L~~-~p~v~~v~~p~~~~~~~~~~~~~~~~~~~g~ivsf~l~~~~~~~~~ 353 (421)
T 2ctz_A 279 VVLLGME----TLSLRAERHVENTLHLAHWLLE-QPQVAWVNYPGLPHHPHHDRAQKYFKGKPGAVLTFGLKGGYEAAKR 353 (421)
T ss_dssp HHHHHHT----THHHHHHHHHHHHHHHHHHHHT-CTTEEEEECTTSTTCTTHHHHHHHHTTCCCSEEEEEETTHHHHHHH
T ss_pred HHHcCcc----hHHHHHHHHHHhHHHHHHHHHh-CCCeeEEECCCCCCCCCHHHHHHhccCCCceEEEEEeCCCHHHHHH
Confidence 2222332 2445566667899999999988 78888753211 11234455555542 2345
Q ss_pred HHHHh--CCeEEcccccCC------CCC--CChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHH
Q psy15216 306 LLMAI--KDIAVSSGSACT------SAS--LEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKL 365 (2602)
Q Consensus 306 ~~~~L--~gI~v~~g~~~~------~~~--~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~ 365 (2602)
++..+ .++.++.|..++ +.. ..+...+..+|+++ +.||+|++.++.++.++.+.++
T Consensus 354 ~~~~l~~~~~~~~~G~~~sl~~~~~~~~h~~~~~~~~~~~g~~~----~~vRlS~g~e~~~~li~~l~~a 419 (421)
T 2ctz_A 354 FISRLKLISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSP----EMVRLSVGLEHVEDLKAELKEA 419 (421)
T ss_dssp HHHTCSSSEECSCCCCSSCEEECGGGTTTTTSCHHHHHHHTCCT----TEEEEECCSSCHHHHHHHHHHH
T ss_pred HHHhCCcceecccCCCCCceeeCCcccccccCCHHHHHhcCCCC----CeEEEEeCCCCHHHHHHHHHHH
Confidence 66666 455666663322 111 11223456778763 8999999976544444444443
|
| >1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.85 E-value=5.8e-21 Score=251.34 Aligned_cols=301 Identities=16% Similarity=0.167 Sum_probs=201.0
Q ss_pred HHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHHHH-HhCCcEEEEecc
Q psy15216 40 EKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDGFRVTYLKP 118 (2602)
Q Consensus 40 ~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~-~~~G~~v~~v~~ 118 (2602)
.+..+++++++++++|.+ ++++++|+++|+++++. +. ++||+|+++.+.|+++...+... +..|++++.++.
T Consensus 132 ~~~~~~l~~~la~~~g~~--~~i~~~sGt~al~~~l~-~~----~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~ 204 (464)
T 1ibj_A 132 NPTRDALESLLAKLDKAD--RAFCFTSGMAALSAVTH-LI----KNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNT 204 (464)
T ss_dssp CHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHT-TS----CTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECT
T ss_pred CHHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHH-Hh----CCCCEEEEECCCchhHHHHHHHHHHHcCCEEEEeCC
Confidence 346889999999999975 77788888999988875 44 79999999999999987766443 556999999986
Q ss_pred CCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHhcCCEEEEecccccccccccCCCCCccEEEecccc
Q psy15216 119 KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK 198 (2602)
Q Consensus 119 ~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~~g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K 198 (2602)
+ |+++|+++++++|++|++++|+||||.++|+++|+++|++||+++|+|++|+.|.....+. +++|++++|+||
T Consensus 205 ~-----d~~~l~~~i~~~tk~v~l~~p~NptG~v~~l~~i~~la~~~gi~livDea~~~g~~~~~~~-~~~div~~S~sK 278 (464)
T 1ibj_A 205 T-----KLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVLSRPLE-LGADIVMHSATK 278 (464)
T ss_dssp T-----SHHHHHHHCCSSEEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEECTTTCTTTCCGGG-TTCSEEEEETTT
T ss_pred C-----CHHHHHHHhccCceEEEEeCCCCCCCEeecHHHHHHHHHHcCCEEEEECCCcccccCChhh-cCCEEEEECCcc
Confidence 4 8999999999999999999999999999999999999999999999999998876421222 578999999999
Q ss_pred cc-CCCCc--EEEEEec-CCCCcccceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---
Q psy15216 199 IY-GPKGI--GALYIRR-NPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYN--- 271 (2602)
Q Consensus 199 ~~-Gp~G~--G~l~~~~-~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~--- 271 (2602)
++ |+.|+ |++++++ ++++.+.+... ...++.+....+++.++++.....++...+....+.+++.+
T Consensus 279 ~~~g~~Gl~~G~l~~~~~~l~~~l~~~~~-------~~g~~~~~~~~~a~~~al~~~~~r~~~~~~~~~~l~~~l~~~~~ 351 (464)
T 1ibj_A 279 FIAGHSDVMAGVLAVKGEKLAKEVYFLQN-------SEGSGLAPFDCWLCLRGIKTMALRIEKQQENARKIAMYLSSHPR 351 (464)
T ss_dssp TTTCSSCCCCEEEEECSHHHHHHHHHHHH-------HTTCBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred cccCCCCCcEEEEEEChHHHHHHHHHHHH-------hcCCCCCHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 55 56675 9999985 55555543321 11223444444444455542222233333333333333332
Q ss_pred -------HHhhccCceEEeCCCCCCCCceEEEEEcccC-hhHHHHHh--CCeEEcccc----cCCCCCC----ChHHHHH
Q psy15216 272 -------GLMESIEEIYINGDMNNRIPHNLNISFNFIE-GESLLMAI--KDIAVSSGS----ACTSASL----EPSYVLR 333 (2602)
Q Consensus 272 -------~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~L--~gI~v~~g~----~~~~~~~----~~~~~~~ 333 (2602)
.|.+ +|++.+..+.......++.+.+.+.+ ...+++.| .+|.++.|. .|.+... .+...+.
T Consensus 352 v~~~~~~~L~~-~p~~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~L~~~gi~v~~G~~~sl~~~p~~~~~~~~~~~~~~ 430 (464)
T 1ibj_A 352 VKKVYYAGLPD-HPGHHLHFSQAKGAGSVFSFITGSVALSKHLVETTKYFSIAVSFGSVKSLISMPCFMSHASIPAEVRE 430 (464)
T ss_dssp CCEEECTTSTT-STTHHHHTTTCSCCCSEEEEECSCHHHHHHHHHHCSSSEECSCCCSSSCEEECTTTTTTCSCCSSSSS
T ss_pred ceEEECCCCCC-CcchHHHhccCCCCceEEEEEECCHHHHHHHHHhcCcceEeecCCCCceeeecccccccccCCHHHHH
Confidence 2222 34444443332212334445443221 23466666 688888775 3332100 0000011
Q ss_pred HcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 334 ALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 334 ~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
.+|.. +++||+|++. ||++++++.|++.
T Consensus 431 ~~g~~----~~~iRlsvg~----edi~~li~~L~~a 458 (464)
T 1ibj_A 431 ARGLT----EDLVRISAGI----EDVDDLISDLDIA 458 (464)
T ss_dssp SSSCC----TTCEEEECCS----SCHHHHHHHHHHH
T ss_pred hcCCC----cCeEEEEeCC----CCHHHHHHHHHHH
Confidence 12322 3789999995 8899999998863
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.1e-20 Score=242.77 Aligned_cols=294 Identities=10% Similarity=0.063 Sum_probs=209.6
Q ss_pred HHHHHHHHHHHhCCCCCcEEEeCCHHHHHH--HHHHhhhhhhcc--C---------CCEEEEcCCCCcchHHHHHHHHhC
Q psy15216 1439 IEKARNEVAQLIYADPREIIWTSGATESNN--LAIKGAAHFYKK--R---------GKHIITVQTEHKSVLDSIRKLEND 1505 (2602)
Q Consensus 1439 ~~~lr~~ia~~~g~~~~~iv~t~gaT~al~--~al~~l~~~~~~--~---------gd~Vlv~~~~~~s~~~~~~~~~~~ 1505 (2602)
..++|+++++++++++++|++|+|++++++ +++.++. + + ||+|++++|+|+++...+...
T Consensus 72 ~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~~~l~----~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~--- 144 (423)
T 3ez1_A 72 LPSARALFAGYLDVKAENVLVWNNSSLELQGLVLTFALL----HGVRGSTGPWLSQTPKMIVTVPGYDRHFLLLQTL--- 144 (423)
T ss_dssp CHHHHHHHHHHTTSCGGGEEECSSCHHHHHHHHHHHHHH----TCCTTCSSCGGGGCCEEEEEESCCHHHHHHHHHH---
T ss_pred hHHHHHHHHHHhCCChhhEEEeCCcHHHHHHHHHHHHHh----ccCCCccccccCCCCEEEEcCCCcHHHHHHHHHc---
Confidence 568999999999999999999999999998 8888877 5 6 699999999999988877776
Q ss_pred CcEEEEeccCCCCCcChhHHHhhc--cCCceEEEE-eccccccccccChH---HHHHHh-hhcCCEEEEecccccCcc--
Q psy15216 1506 GFRVTYLKPKNNGLITLSQLEEKI--CSDTILVSV-MLVNNEIGVIQPIL---EIGELC-RSKGVIFHCDAAQAVGKI-- 1576 (2602)
Q Consensus 1506 G~~v~~v~~~~~~~id~d~l~~~i--~~~t~lv~l-~~~~n~tG~~~~l~---~I~~ia-~~~gi~vivD~a~~~g~~-- 1576 (2602)
|++++.++.+.++ +|+++|++++ ++++++|++ ++++||||.++|.+ +|+++| ++||+++|+|++|+....
T Consensus 145 g~~~~~v~~~~~g-~d~~~l~~~l~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~ 223 (423)
T 3ez1_A 145 GFELLTVDMQSDG-PDVDAVERLAGTDPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVE 223 (423)
T ss_dssp TCEEEEEEEETTE-ECHHHHHHHHHSCTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTSSCBCCS
T ss_pred CCEEEeccCCCCC-CCHHHHHHHHhhCCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcchhhcCC
Confidence 9999999987765 9999999999 688998875 58999999999976 888888 899999999999873211
Q ss_pred -----cccC-------CCCCccEEEEccccc-cCCCceEEEEEecCCCCccccccccCCccccCCCCCcchhHHHHHHHH
Q psy15216 1577 -----DINI-------QNYKVDLMSFSAHKI-YGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEA 1643 (2602)
Q Consensus 1577 -----~~~l-------~~~~~D~~v~S~~K~-~gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~a 1643 (2602)
+.++ ...+.++++.|+||. ++..++||+++++++++.+..... ....+++...+.++..+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~G~r~G~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~a~~~~ 296 (423)
T 3ez1_A 224 EDRAEPVNFVVLARDAGYPDRAFVFASTSKITFAGAGLGFVASSEDNIRWLSKYLG-------AQSIGPNKVEQARHVKF 296 (423)
T ss_dssp SSCCCCCCHHHHHHHHTCTTSEEEEEESTTTSCSSSSCEEEEECHHHHHHHHHHHH-------HSCSCCCHHHHHHHHHH
T ss_pred CCCCCCcchhhhhhccCCCCeEEEEeCchhhccCCcceEEEEeCHHHHHHHHHHHh-------hhccCCCHHHHHHHHHH
Confidence 1111 133567889999994 333348999999876666544321 11223455555555455
Q ss_pred HHH----HHHHHHHHHHHHHHHHHHHHHHHhhc---CC-cEEEeCCCCCCCCceEEEEEecCCcHHHHHhc--CCEEEcc
Q psy15216 1644 FRL----ARIEMKEELKRILFLQKRLYNGLMES---IE-EIYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDIAVSS 1713 (2602)
Q Consensus 1644 L~~----~~~~~~~~~~~~~~l~~~l~~~L~~~---~~-gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~v~~ 1713 (2602)
+.. ....+.+..+.+.+.++.+.+.|.+. ++ ++.+..+.. .....+.++..+...+...| +||.+++
T Consensus 297 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~p~~---g~~~~~~~~~~~~~~~~~~l~~~gv~v~~ 373 (423)
T 3ez1_A 297 LTEYPGGLEGLMRDHAAIIAPKFRAVDEVLRAELGEGGEYATWTLPKG---GYFISLDTAEPVADRVVKLAEAAGVSLTP 373 (423)
T ss_dssp HHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSEEECCCSB---SSCEEEEESSSCHHHHHHHHHHTTEECCC
T ss_pred HHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCceEEeCCCc---cEEEEEECCCCcHHHHHHHHHHCCcEEec
Confidence 553 12334555555555555555555432 22 366654322 23344555544455565555 8999999
Q ss_pred -ccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1714 -GSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1714 -g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
|..|... .....+++||+++.. +.+++++++++|++.
T Consensus 374 ~g~~~~~~--------------~~~~~~~iRis~~~~-~~~~i~~~~~~l~~~ 411 (423)
T 3ez1_A 374 AGATYPAG--------------QDPHNRNLRLAPTRP-PVEEVRTAMQVVAAC 411 (423)
T ss_dssp TTTTSSTT--------------CCSSSCEEEECCSSS-CHHHHHHHHHHHHHH
T ss_pred CcccccCC--------------CCCCCCeEEEEcCCC-CHHHHHHHHHHHHHH
Confidence 5555421 012248999999765 999999999999974
|
| >2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.5e-19 Score=238.14 Aligned_cols=331 Identities=15% Similarity=0.134 Sum_probs=227.9
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCC
Q psy15216 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK 87 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd 87 (2602)
++|+.+.+++.+.+...+ ++. ......++|+++++++|.+ ++++++|+|+|+++++.++. +||
T Consensus 29 ~~p~~~~~a~~~~~~~~~-y~~---------~~~~~~~l~~~la~~~~~~--~v~~~~ggt~al~~~l~~l~-----~gd 91 (424)
T 2po3_A 29 IDRARLYERLDRALDSQW-LSN---------GGPLVREFEERVAGLAGVR--HAVATCNATAGLQLLAHAAG-----LTG 91 (424)
T ss_dssp CCHHHHHHHHHHHHHHTC-CSS---------SCHHHHHHHHHHHHHHTSS--EEEEESCHHHHHHHHHHHHT-----CCS
T ss_pred CChHHHHHHHHHHHhcCC-ccc---------CCHHHHHHHHHHHHHhCCC--eEEEeCCHHHHHHHHHHHcC-----CCC
Confidence 346688999988886421 111 0135788999999999974 89999999999999999875 689
Q ss_pred EEEEcCCCCcccHHHHHHHHhCCcEEEEeccCC-CCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHhcC
Q psy15216 88 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKG 166 (2602)
Q Consensus 88 ~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~-~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~~g 166 (2602)
+|++++++|+++...+... |++++.+++++ ++.+|+++|++++++++++|+++| |||...++++|.++|++||
T Consensus 92 ~Vlv~~~~~~~~~~~~~~~---G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~---~tG~~~~l~~i~~la~~~~ 165 (424)
T 2po3_A 92 EVIMPSMTFAATPHALRWI---GLTPVFADIDPDTGNLDPDQVAAAVTPRTSAVVGVH---LWGRPCAADQLRKVADEHG 165 (424)
T ss_dssp EEEEESSSCTHHHHHHHHT---TCEEEEECBCTTTSSBCHHHHGGGCCTTEEEEEEEC---GGGCCCCHHHHHHHHHHTT
T ss_pred EEEECCCccHHHHHHHHHc---CCEEEEEecCCCcCCcCHHHHHHhhCcCCcEEEEEC---CCCCcCCHHHHHHHHHHcC
Confidence 9999999999988766554 99999999886 678999999999999999999865 7999999999999999999
Q ss_pred CEEEEecccccccccccCCCC--CccEEEeccc--cccCCCCcEEEEEe-cCCCCcccceecCCCcc-ccc-cccCc-ch
Q psy15216 167 VIFHCDAAQAVGKIDINIQNY--KVDLMSFSAH--KIYGPKGIGALYIR-RNPRTRIEAQIHGGGHE-YGL-RSGTL-AT 238 (2602)
Q Consensus 167 ~~livD~a~a~g~~~~dl~~~--~~D~~~~S~~--K~~Gp~G~G~l~~~-~~~~~~l~~~~~g~~~~-~~~-~~gt~-~~ 238 (2602)
+++|+|++|+.|.. .+.... ..|++++|+| |.+++..+|+++.+ +++++.+.+....+... ... ..|.. ..
T Consensus 166 ~~li~Dea~~~g~~-~~~~~~~~~~di~~~S~sk~K~l~~~~~G~~v~~~~~l~~~l~~~~~~~~~~~~~~~~~g~~~~~ 244 (424)
T 2po3_A 166 LRLYFDAAHALGCA-VDGRPAGSLGDAEVFSFHATKAVNAFEGGAVVTDDADLAARIRALHNFGFDLPGGSPAGGTNAKM 244 (424)
T ss_dssp CEEEEECTTCTTCE-ETTEETTSSSSEEEEECCTTSSSCCSSCEEEEESCHHHHHHHHHHHBTTTTCTTCCTTCCCBCCC
T ss_pred CEEEEECccccCCe-ECCeecccccCEEEEeCCCCCCccCCCCeEEEeCCHHHHHHHHHHHhcCccccccccccCcCCCc
Confidence 99999999997653 221111 1589999998 66655447999988 56666665543321110 000 11111 11
Q ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCC--CCCceEEEEEc----ccChhHHHHHh--
Q psy15216 239 HQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNN--RIPHNLNISFN----FIEGESLLMAI-- 310 (2602)
Q Consensus 239 ~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~--~~~~~~~~~~~----~~~~~~~~~~L-- 310 (2602)
..+ +...++.. ..++++..++..++++++.+.|.+ ++++.+..++.. .....+.+.++ ..+..++.+.|
T Consensus 245 ~~~-~aa~~l~~-~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~L~~ 321 (424)
T 2po3_A 245 SEA-AAAMGLTS-LDAFPEVIDRNRRNHAAYREHLAD-LPGVLVADHDRHGLNNHQYVIVEIDEATTGIHRDLVMEVLKA 321 (424)
T ss_dssp CHH-HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTCS-CTTEEECCGGGGSCCCCCCEEEEECHHHHSSCHHHHHHHHHH
T ss_pred CHH-HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcc-CCCccccCCCCCCccccEEEEEEECCccchhhHHHHHHHHHH
Confidence 222 22233332 234677888888999999999977 678888763321 11234445555 34666777766
Q ss_pred CCeEEcccccCCCC-CCChHHHHHHcC---CC--ccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 311 KDIAVSSGSACTSA-SLEPSYVLRALG---CN--DELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 311 ~gI~v~~g~~~~~~-~~~~~~~~~~~g---~~--~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
+||.+++ .|.++ +..+.+ ..+| .. .......||++++.+++++|+++++++|++.
T Consensus 322 ~gI~v~~--~~~~~~~~~~~~--~~~g~~~~~~~~r~~~~~l~l~~~~~~t~e~i~~~~~~L~~~ 382 (424)
T 2po3_A 322 EGVHTRA--YFSPGCHELEPY--RGQPHAPLPHTERLAARVLSLPTGTAIGDDDIRRVADLLRLC 382 (424)
T ss_dssp TTEECBC--TTCSCGGGSTTT--TTSCCCCCHHHHHHHTTEEEECCSTTCCHHHHHHHHHHHHHH
T ss_pred CCCceec--ccCCccccchhh--hhcCCCCChhHHHHhcCEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 7999886 33311 000000 0011 00 0011245899988999999999999999974
|
| >1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-20 Score=245.87 Aligned_cols=296 Identities=14% Similarity=0.118 Sum_probs=200.2
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHH-HHhCCcEEEEeccC
Q psy15216 1437 KAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDGFRVTYLKPK 1515 (2602)
Q Consensus 1437 ~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~-~~~~G~~v~~v~~~ 1515 (2602)
....++++++++++|.+ ++++++|+++|++.++.++. ++||+|+++++.|+++...+.. +...|++++.++.+
T Consensus 62 ~~~~~l~~~ia~~~g~~--~~i~~~~g~~ai~~~~~~l~----~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~ 135 (404)
T 1e5e_A 62 PTVSNLEGKIAFLEKTE--ACVATSSGMGAIAATVLTIL----KAGDHLISDECLYGCTHALFEHALTKFGIQVDFINTA 135 (404)
T ss_dssp HHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHC----CTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT
T ss_pred hHHHHHHHHHHHHhCCC--cEEEeCChHHHHHHHHHHHh----CCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCC
Confidence 45678999999999975 77888888999999999886 7999999999999998886543 45569999999865
Q ss_pred CCCCcChhHHHhhccCCceEEEEeccccccccccChHHHHHHhhh-cCCEEEEecccccCcccccCCCCCccEEEEcccc
Q psy15216 1516 NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRS-KGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK 1594 (2602)
Q Consensus 1516 ~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~~ia~~-~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K 1594 (2602)
|+++|+++++++|++|++++|+||||.++|+++|.++|++ ||+++++|++|+.+.....+ .++.|+++.|+||
T Consensus 136 -----d~~~l~~~i~~~t~~v~l~~p~NptG~v~~l~~i~~la~~~~~~~li~De~~~~~~~~~~~-~~~~di~~~S~sK 209 (404)
T 1e5e_A 136 -----IPGEVKKHMKPNTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFCSPMITNPV-DFGVDVVVHSATK 209 (404)
T ss_dssp -----STTHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHTSTTCEEEEECTTTCTTTCCGG-GGTCSEEEEETTT
T ss_pred -----CHHHHHHhcCCCCcEEEEECCCCCCCcccCHHHHHHHHHhhcCCEEEEECCCchhhhCCcc-ccCCEEEEEcCcc
Confidence 7899999999999999999999999999999999999999 99999999999877632222 3578999999999
Q ss_pred ccCCCc---eEEEEEecCCCC-ccccccccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15216 1595 IYGPKG---IGALYIRRNPRT-RIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLM 1670 (2602)
Q Consensus 1595 ~~gp~G---~G~l~~~~~~~~-~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~ 1670 (2602)
+++.+| +|+++++++.++ .+.+...+ +..++.+....+++..+++. .....++.....+.+.+.+.
T Consensus 210 ~~~~~g~ri~G~~~~~~~~~~~~l~~~~~~------~~g~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~l~~~l~ 279 (404)
T 1e5e_A 210 YINGHTDVVAGLICGKADLLQQIRMVGIKD------ITGSVISPHDAWLITRGLST----LNIRMKAESENAMKVAEYLK 279 (404)
T ss_dssp TTTCSSCCCCEEEEECHHHHHHHHHTCCCC------CCCCCCCHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCeEEEEEECHHHHHHHHHHHHHh------CCCCCCCHHHHHHHHHhHhH----HHHHHHHHHHHHHHHHHHHH
Confidence 666444 499999987665 55443211 10123444444444455543 23344444556666666666
Q ss_pred hcCCcEE-EeCCC--C-----------CCCCceEEEEEecCCcHHHHHhc--CCEEEccccccC----------CCC--C
Q psy15216 1671 ESIEEIY-INGDM--N-----------NRIPHNLNISFNFIEGESLLMAI--KDIAVSSGSACT----------SAS--L 1722 (2602)
Q Consensus 1671 ~~~~gl~-i~~~~--~-----------~~~~~~~~~~~~~~~~~~~~~~L--~gI~v~~g~~~~----------~~~--~ 1722 (2602)
+ .+.+. +..+. . .....+..+.++.. .......+ .+|. ..+..++ ... .
T Consensus 280 ~-~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~l~~~~i~-~~~~s~G~~~sl~~~~~~~~~~~ 356 (404)
T 1e5e_A 280 S-HPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKSG-FEGAKKLLDNLKLI-TLAVSLGGCESLIQHPASMTHAV 356 (404)
T ss_dssp T-CTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETTH-HHHHHHHHHTCSSS-EESSCCCSSSCEEECGGGTTTTT
T ss_pred h-CCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEeCCC-HHHHHHHHHhCCCc-eeccCCCCcceeeeccccccccc
Confidence 5 33332 11111 0 01123333333221 12222222 5663 3333222 110 1
Q ss_pred ChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1723 EPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1723 ~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
.+.......|.+ .++||||++. ++++++++.|++.
T Consensus 357 ~~~~~~~~~g~~----~~~iRis~g~----e~~~~li~~l~~a 391 (404)
T 1e5e_A 357 VPKEEREAAGIT----DGMIRLSVGI----EDADELIADFKQG 391 (404)
T ss_dssp SCHHHHHHTTCC----TTEEEEECCS----SCHHHHHHHHHHH
T ss_pred CCHHHHHhcCCC----CCeEEEEeCC----CCHHHHHHHHHHH
Confidence 122233344543 3899999995 7899999988863
|
| >1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.84 E-value=5.9e-20 Score=238.75 Aligned_cols=300 Identities=13% Similarity=0.076 Sum_probs=212.2
Q ss_pred HHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHHH-HhCCcEEEEecc
Q psy15216 1436 EKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDGFRVTYLKP 1514 (2602)
Q Consensus 1436 ~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~-~~~G~~v~~v~~ 1514 (2602)
.....+++++++++++.+ +.+++ +++++|++.++.++. ++||+|+++.++|+++...+... +..|++++.++.
T Consensus 51 ~~~~~~l~~~la~~~~~~-~~i~~-~sGt~a~~~~~~~~~----~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 124 (386)
T 1cs1_A 51 NPTRDVVQRALAELEGGA-GAVLT-NTGMSAIHLVTTVFL----KPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQ 124 (386)
T ss_dssp CHHHHHHHHHHHHHHTCS-EEEEE-SSHHHHHHHHHHHHC----CTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEECT
T ss_pred CccHHHHHHHHHHHhCCC-cEEEe-CCHHHHHHHHHHHHh----CCCCEEEEecCCcHhHHHHHHHHHHhcCCEEEEeCC
Confidence 345788999999999986 45555 555999999999886 79999999999999877666443 556999999876
Q ss_pred CCCCCcChhHHHhhccCCceEEEEeccccccccccChHHHHHHhhhcCCEEEEecccccCcccccCCCCCccEEEEcccc
Q psy15216 1515 KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK 1594 (2602)
Q Consensus 1515 ~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K 1594 (2602)
+ |++++++++++++++|++++++||||.+.|+++|.++|++||+++|+|++|+.+....++ .+++|++++|+||
T Consensus 125 ~-----d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~-~~~~di~~~s~sK 198 (386)
T 1cs1_A 125 G-----DEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQNPL-ALGADLVLHSCTK 198 (386)
T ss_dssp T-----CHHHHHHHHHTCCSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCGG-GGTCSEEEEETTT
T ss_pred C-----CHHHHHHhhccCCcEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccCCcc-ccCceEEEEcCcc
Confidence 4 899999999999999999999999999999999999999999999999999887654333 4678999999999
Q ss_pred ccC-CCce--EEEEEec-CCCCccccccccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15216 1595 IYG-PKGI--GALYIRR-NPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLM 1670 (2602)
Q Consensus 1595 ~~g-p~G~--G~l~~~~-~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~ 1670 (2602)
+++ |.+. |++++++ ++++.+.+...++ .++.+....++...+++. +....++..+.++++.+.|.
T Consensus 199 ~~~~~~~~~~G~~~~~~~~l~~~l~~~~~~~-------~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~l~~~l~ 267 (386)
T 1cs1_A 199 YLNGHSDVVAGVVIAKDPDVVTELAWWANNI-------GVTGGAFDSYLLLRGLRT----LVPRMELAQRNAQAIVKYLQ 267 (386)
T ss_dssp TTTCSSCCCCEEEEESSHHHHHHHHHHHHHH-------TCBCCHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHHHHT
T ss_pred cccCCCCceeEEEEeCcHHHHHHHHHHHHhc-------CCCCCHHHHHHHHhcccH----HHHHHHHHHHHHHHHHHHHh
Confidence 665 5543 9999986 5666665443221 123444444443344442 33445556667777777776
Q ss_pred hcCCcEEEe-CCC-------------CCCCCceEEEEEecCCcHHHHHhc--CCEEEcc---c------cccCC--CCCC
Q psy15216 1671 ESIEEIYIN-GDM-------------NNRIPHNLNISFNFIEGESLLMAI--KDIAVSS---G------SACTS--ASLE 1723 (2602)
Q Consensus 1671 ~~~~gl~i~-~~~-------------~~~~~~~~~~~~~~~~~~~~~~~L--~gI~v~~---g------~~~~~--~~~~ 1723 (2602)
+ .+.+.-. .+. ......+..+.++.. ...+...| .||.++. | .+|.. ....
T Consensus 268 ~-~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~gi~~~~~~~g~~~sl~~~~~~~~~~~~ 345 (386)
T 1cs1_A 268 T-QPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGD-EQTLRRFLGGLSLFTLAESLGGVESLISHAATMTHAGM 345 (386)
T ss_dssp T-CTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSC-HHHHHHHHHTCSSSEEBSCCCSSSCEEEEGGGTTTTTS
T ss_pred c-CCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECCC-HHHHHHHHHhCCcceEcccCCCcceeeecccccccccC
Confidence 6 5555322 111 011234444554432 34444444 6888763 3 22211 1112
Q ss_pred hhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1724 PSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1724 ~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
++.....+|..+ +++|+|++.++++++++++.++|++
T Consensus 346 ~~~~~~~~g~~~----~~iRis~~~~~~~~~i~~l~~al~~ 382 (386)
T 1cs1_A 346 APEARAAAGISE----TLLRISTGIEDGEDLIADLENGFRA 382 (386)
T ss_dssp CHHHHHHHTCCT----TEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred CHHHHHhcCCCC----CeEEEEEccCCHHHHHHHHHHHHHH
Confidence 344555666543 8999999999999999999999986
|
| >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.84 E-value=7e-20 Score=237.46 Aligned_cols=303 Identities=16% Similarity=0.219 Sum_probs=213.9
Q ss_pred CCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccc---cC
Q psy15216 9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYK---KR 85 (2602)
Q Consensus 9 ~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~---~~ 85 (2602)
+++.+.+++.+.+... .++.. .|. .....++++++++++|+ ++++++++|+|+|+++++.++. .+. ++
T Consensus 45 ~~~~v~~a~~~~~~~~-~~~~~-~y~-----~~~~~~l~~~la~~~g~-~~~v~~~~g~t~a~~~~~~~~~-~~~~~~~~ 115 (375)
T 2eh6_A 45 AYPKLTEALKEQVEKL-LHVSN-LYE-----NPWQEELAHKLVKHFWT-EGKVFFANSGTESVEAAIKLAR-KYWRDKGK 115 (375)
T ss_dssp SCHHHHHHHHHHHHHC-SCCCT-TBC-----CHHHHHHHHHHHHTSSS-CEEEEEESSHHHHHHHHHHHHH-HHHHHTTC
T ss_pred CCHHHHHHHHHHHHhc-cccCc-ccC-----CHHHHHHHHHHHhhcCC-CCeEEEeCchHHHHHHHHHHHH-HHhccCCC
Confidence 7899999999988653 22222 121 13467889999999998 4789999999999999997641 112 57
Q ss_pred C-CEEEEcCCCCcccHHHHHHHHhC-----CcE-----EEEeccCCCCccChHHHHhhccCCceEEEEecccCccccccc
Q psy15216 86 G-KHIITVQTEHKSVLDSIRKLEND-----GFR-----VTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP 154 (2602)
Q Consensus 86 g-d~Vlv~~~~~~s~~~~~~~~~~~-----G~~-----v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~ 154 (2602)
| |+|++++++|+++...+..+... |.. +..++. .|+++|++++++++++|++++++||||.+.|
T Consensus 116 g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~l~~~~~~v~~~~~~~~tG~~~~ 190 (375)
T 2eh6_A 116 NKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYAKL-----NDIDSVYKLLDEETAGIIIEVIQGEGGVNEA 190 (375)
T ss_dssp CCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCCSSEEEECT-----TCHHHHHTTCCTTEEEEEECSEETTTTSEEC
T ss_pred CCCEEEEECCCcCCCchhhhhhcCCccccCCCCCCCCCceeCCC-----chHHHHHHHhcCCeEEEEEeCccCCCCCcCC
Confidence 8 99999999998876666544110 211 333332 5899999999999999999999999999988
Q ss_pred ----HHHHHHHHHhcCCEEEEecccc-ccccc--ccCCCCC--ccEEEeccccccC-CCCcEEEEEecCCCCcccceecC
Q psy15216 155 ----ILEIGELCRSKGVIFHCDAAQA-VGKID--INIQNYK--VDLMSFSAHKIYG-PKGIGALYIRRNPRTRIEAQIHG 224 (2602)
Q Consensus 155 ----l~~I~~la~~~g~~livD~a~a-~g~~~--~dl~~~~--~D~~~~S~~K~~G-p~G~G~l~~~~~~~~~l~~~~~g 224 (2602)
+++|.++|++||+++|+|++|+ ++..+ +++..++ +|+++ ++|.+| +.++|++++++++++.+.+...+
T Consensus 191 ~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~d~~s--~SK~~~~g~~~G~~~~~~~~~~~~~~~~~~ 268 (375)
T 2eh6_A 191 SEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAYQHFNLKPDVIA--LAKGLGGGVPIGAILAREEVAQSFTPGSHG 268 (375)
T ss_dssp CHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEE--ECGGGGTTSCCEEEEEEHHHHTTCCTTSCC
T ss_pred CHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcchhhhhcCCCCCEEE--EcccccCCCCeEEEEEcHHHHhhhcCCCCC
Confidence 9999999999999999999998 55432 2334444 78875 459554 45689999998877777652211
Q ss_pred CCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcccChh
Q psy15216 225 GGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGE 304 (2602)
Q Consensus 225 ~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~ 304 (2602)
. ..++ +.....++.++|+... +..++.+++++++.+.|.+ ++...+. + ...++.+.++. +..
T Consensus 269 ~------~~~~-~~~~~~~~~~~l~~~~----~~~~~~~~~~~~l~~~L~~-~~~~~~~-~----~g~~~~~~~~~-~~~ 330 (375)
T 2eh6_A 269 S------TFGG-NPLACRAGTVVVDEVE----KLLPHVREVGNYFKEKLKE-LGKGKVK-G----RGLMLGLELER-ECK 330 (375)
T ss_dssp C------SSTT-CHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH-TTSSEEE-E----ETTEEEEECSS-CCH
T ss_pred C------CCCC-CHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH-HhcCCce-E----EEEEEEEEEcC-cHH
Confidence 1 1223 4444444456666432 6777888889999999977 4332111 1 12333444432 455
Q ss_pred HHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 305 SLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 305 ~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
++.+.| +||.++++. .+++|++++.+++++|+++++++|++
T Consensus 331 ~~~~~l~~~gi~~~~~~-----------------------~~~iRi~~~~~~~~~~i~~~~~~l~~ 373 (375)
T 2eh6_A 331 DYVLKALEKGLLINCTA-----------------------GKVLRFLPPLIIQKEHIDRAISVLRE 373 (375)
T ss_dssp HHHHHHHHTTEECEEET-----------------------TTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCEEecCC-----------------------CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 666666 788887541 27899999988999999999999985
|
| >1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=5.6e-20 Score=251.11 Aligned_cols=295 Identities=15% Similarity=0.076 Sum_probs=217.7
Q ss_pred HHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHH-HHHHHhCCcEEEEeccCC
Q psy15216 42 AIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDS-IRKLENDGFRVTYLKPKN 120 (2602)
Q Consensus 42 ~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~-~~~~~~~G~~v~~v~~~~ 120 (2602)
.+.++++.+|+++|++. .+++++|+|+|+..++.++. ++||+|+++.+.|+++... +. ..|+++++++...
T Consensus 174 ~i~e~e~~lA~~~gae~-~i~v~nGtt~an~~ai~al~----~pGD~VLv~~~~H~S~~~~~~~---l~Ga~~v~v~~~~ 245 (730)
T 1c4k_A 174 PAVAAEKHAARVYNADK-TYFVLGGSSNANNTVTSALV----SNGDLVLFDRNNHKSVYNSALA---MAGGRPVYLQTNR 245 (730)
T ss_dssp HHHHHHHHHHHHTTCSE-EEEESSHHHHHHHHHHHHHC----CTTCEEEEETTCCHHHHHHHTT---TTCCEEEEECEEE
T ss_pred HHHHHHHHHHHHHCCCc-EEEECCHHHHHHHHHHHHhc----CCCCEEEEcCCchHHHHHHHHH---HCCCEEEEEeCCc
Confidence 57899999999999863 58888888899999999987 8999999999999998876 43 3499999987643
Q ss_pred C-----CccChHHH-----HhhccCC------c----eEEEEecccCcccccccHHHHHHHHHhcCCEEEEeccccccc-
Q psy15216 121 N-----GLITLSQL-----EEKICSD------T----ILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGK- 179 (2602)
Q Consensus 121 ~-----~~ld~e~l-----~~~i~~~------t----klv~i~~~~npTG~~~~l~~I~~la~~~g~~livD~a~a~g~- 179 (2602)
+ +.+|+++| +++++++ + ++++++++ |++|.+.|+++|+++|++||+++++|+||+.+.
T Consensus 246 ~~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~dl~~I~~la~~~g~~livDeAh~~~~~ 324 (730)
T 1c4k_A 246 NPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQ 324 (730)
T ss_dssp CTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEECHHHHHHHHGGGBSEEEEECTTCCGGG
T ss_pred cccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecCHHHHHHHHHHcCCeEEEEcccccccc
Confidence 2 34799999 9999775 5 89999998 589999999999999999999999999996421
Q ss_pred --------ccccCCCCCcc----EEEecccc-ccCCCCcEEEEEecCCCCc----ccceecCCCccccccccCcchhHHH
Q psy15216 180 --------IDINIQNYKVD----LMSFSAHK-IYGPKGIGALYIRRNPRTR----IEAQIHGGGHEYGLRSGTLATHQIV 242 (2602)
Q Consensus 180 --------~~~dl~~~~~D----~~~~S~~K-~~Gp~G~G~l~~~~~~~~~----l~~~~~g~~~~~~~~~gt~~~~~~~ 242 (2602)
.+++...+++| ++++|+|| +.|+.+.|+++++++.+.. +..... ......+..++|++..++
T Consensus 325 f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~g~~~gg~I~v~~~~l~g~~~~i~~~~~-~~~~~~~~stsp~~~~ia 403 (730)
T 1c4k_A 325 FIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSHIKGQLRYCDHKHF-NNSFNLFMSTSPFYPMYA 403 (730)
T ss_dssp SSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCTTCEEEEEECGGGTTSTTCCCHHHH-HHHHHHHSCSSCCHHHHH
T ss_pred cCcccCCcCcccccccCCCCCCEEEEECCCCCCCCCCCEEEEEecchhhcCcccccCHHHH-HHHHHHhCCCCCcHHHHH
Confidence 12333344677 99999999 5567778899888764311 110000 000012346789999999
Q ss_pred HHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCC--------------------------------C-
Q psy15216 243 GMGEAFRLARI-EMKEELKRILFLQKRLYNGLMESIEEIYINGDMN--------------------------------N- 288 (2602)
Q Consensus 243 al~~al~~~~~-~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~--------------------------------~- 288 (2602)
++.+|+++... ...+..++..++++++++.|.+.++|++++.+.. .
T Consensus 404 al~aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 483 (730)
T 1c4k_A 404 ALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWRFEKGAKWHAYEG 483 (730)
T ss_dssp HHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGGGBCCTTCTTTCCTT
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhCCCeEEccccccccccccccccccccccchhhccCccchhccccc
Confidence 99889886554 4567778889999999999976458888876532 0
Q ss_pred C-------CCceEEEEEcc------------cChhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEE
Q psy15216 289 R-------IPHNLNISFNF------------IEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIR 347 (2602)
Q Consensus 289 ~-------~~~~~~~~~~~------------~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iR 347 (2602)
. .|.-+.+..++ .++..+.+.| +||.++.. ..+.+|
T Consensus 484 ~~~~~~~idp~kv~i~~pg~~~~~g~~~~~g~~~~~l~~~L~e~GI~v~~~-----------------------~~~~ir 540 (730)
T 1c4k_A 484 YGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDHGIIPEKS-----------------------DLNSIL 540 (730)
T ss_dssp CCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHHTTCCCSEE-----------------------CSSEEE
T ss_pred cCCcccccCCeEEEEEeCCcccccccccccCCCHHHHHHHHHHCCcEEEEC-----------------------CCCeEE
Confidence 0 01113333332 2344555555 56665421 126799
Q ss_pred EecCCCCCHHHHHHHHHHHHhh
Q psy15216 348 FTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 348 is~~~~~t~edid~li~~L~~~ 369 (2602)
++++.++|.+++++++++|++.
T Consensus 541 ~~~s~g~t~e~i~~Ll~aL~~i 562 (730)
T 1c4k_A 541 FLMTPAETPAKMNNLITQLLQL 562 (730)
T ss_dssp EECCTTCCHHHHHHHHHHHHHH
T ss_pred EEeCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999864
|
| >3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} | Back alignment and structure |
|---|
Probab=99.84 E-value=2e-20 Score=246.31 Aligned_cols=316 Identities=11% Similarity=0.029 Sum_probs=218.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHhh-hcCCCCCCCcchhhhHHHHHHHHHHHHHHHh-CC-CCC---cEEEeCCHHHHHHHHH
Q psy15216 2 DYSATTPIDPRVVDKMIPYLRV-QFGNPASRNHIYGWTAEKAIEKARNEVAQLI-YA-DPR---EIIWTSGATESNNLAI 75 (2602)
Q Consensus 2 d~a~~~~~p~~v~~a~~~~l~~-~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~-g~-~~~---~Iv~t~g~T~al~~~~ 75 (2602)
|+....++++.+.+++.+.... ...++.. ....++|+++++++ +. .++ +|++|+|+++|+.+++
T Consensus 50 ~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~----------~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~g~~~al~~~~ 119 (418)
T 3rq1_A 50 DEEGNLVFLKTVKEEYLSLSDSEHVGYAPI----------AGIPDFLCAAEKECFGNFRPEGHIRSIATAGGTGGIHHLI 119 (418)
T ss_dssp CTTSCBCCCHHHHHHHHTCCHHHHHSCCCT----------TCCHHHHHHHHHHHHGGGCCSSEEEEEEESHHHHHHHHHH
T ss_pred CCCCCccccHHHHHHHHHhcccccCCCCCC----------CChHHHHHHHHHHHhcccCccccccEEECCchHHHHHHHH
Confidence 3344567888888887664432 2222221 11345667777755 21 245 8999999999999999
Q ss_pred HhcccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccC-CCCccChHHHHhhccC----Cce-EEEEecc-cCc
Q psy15216 76 KGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK-NNGLITLSQLEEKICS----DTI-LVSVMLV-NNE 148 (2602)
Q Consensus 76 ~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~-~~~~ld~e~l~~~i~~----~tk-lv~i~~~-~np 148 (2602)
.++. ++||+|+++.|.|+++...+... |++++.++.+ +++.+|+++|++++++ +++ ++++++| +||
T Consensus 120 ~~l~----~~gd~Vl~~~p~~~~~~~~~~~~---g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~~~~~vi~~~p~~NP 192 (418)
T 3rq1_A 120 HNYT----EPGDEVLTADWYWGAYRVICSDT---GRTLVTYSLFDEHNNFNHEAFQNRVNELAAKQTNVVVIFNTPGNNP 192 (418)
T ss_dssp HHHS----CTTCEEEEESSCCTHHHHHHHHT---TCEEEEECSBCTTSSBCHHHHHHHHHHHHHHCSEEEEEEECSSCTT
T ss_pred HHhc----CCCCEEEECCCCchhHHHHHHHc---CCEEEEEeeeCCCCCcCHHHHHHHHHHhhccCCCEEEEEeCCCCCC
Confidence 9987 89999999999999987766555 9999999984 4568999999999975 666 8889999 999
Q ss_pred ccccccHHHHH---HHHH------hcCCEEEEecccccccc------cc--cCCCCCcc---EEEeccccccCCCC--cE
Q psy15216 149 IGVIQPILEIG---ELCR------SKGVIFHCDAAQAVGKI------DI--NIQNYKVD---LMSFSAHKIYGPKG--IG 206 (2602)
Q Consensus 149 TG~~~~l~~I~---~la~------~~g~~livD~a~a~g~~------~~--dl~~~~~D---~~~~S~~K~~Gp~G--~G 206 (2602)
||.++|.+++. ++|+ +||+++|+|++|..... ++ .......+ +++.|+||.+|++| +|
T Consensus 193 tG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G 272 (418)
T 3rq1_A 193 TGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAFFNKFSHLPKEILTCVCYSLSKGFTMYGQRVG 272 (418)
T ss_dssp TCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHHHHGGGGGGTTCCTTEEEEEEEESTTTTTCCSSCCE
T ss_pred CCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCChHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCcCCcce
Confidence 99999966655 5555 89999999999843211 11 11222233 77889999888777 79
Q ss_pred EEEE---ecCCCCcccceecCCCccccccccCcchhHHHHHHHHHHHH------HHhHHHHHHHHHHHHHHHHHHHhhcc
Q psy15216 207 ALYI---RRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLA------RIEMKEELKRILFLQKRLYNGLMESI 277 (2602)
Q Consensus 207 ~l~~---~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~------~~~~~~~~~~~~~l~~~l~~~L~~~~ 277 (2602)
|+++ ++++++.+....... ......+++..+..++..+++.. .....+.+++++++++++.+.|.+ +
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~ 348 (418)
T 3rq1_A 273 AMIGISDDEEIADEFFEVNKST---SRATWSNICRPAMRTMANIVADPAKFKEYEAERNCYYQLIRDRADIFKQEAAQ-V 348 (418)
T ss_dssp EEEEEESSHHHHHHHHHHHHHH---HHHHTSSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
T ss_pred EEEEEeCCHHHHHHHHHHHHHH---HhhccCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c
Confidence 9998 776666665432100 00001245666666666666421 122346677888888999999977 3
Q ss_pred CceEEeCCCCCCCCceEEEEEcccChhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCC
Q psy15216 278 EEIYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTT 355 (2602)
Q Consensus 278 ~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t 355 (2602)
|+.+..+... .+++++..+..++.+.| +||.+++|. +++|||++ ..+
T Consensus 349 -g~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~gi~v~~g~------------------------~~iRis~~-~~~ 397 (418)
T 3rq1_A 349 -GLPMLPYRGG-----FFITIPTDSANAICEELKKEHIYVIALA------------------------NGIRIAAC-GIP 397 (418)
T ss_dssp -TCCCCCCCSS-----SEEEEECTTHHHHHHHHHHTTEECEECS------------------------SEEEEEGG-GSC
T ss_pred -CCCCCCCCce-----EEEEcCCCCHHHHHHHHHhCCEEEecCC------------------------CCeEEEEe-cCC
Confidence 6665543221 12333334666776666 799988652 67999987 468
Q ss_pred HHHHHHHHHHHHhh
Q psy15216 356 EKEIDFTIKLLKMK 369 (2602)
Q Consensus 356 ~edid~li~~L~~~ 369 (2602)
++++++++++|++.
T Consensus 398 ~~~i~~~~~~l~~~ 411 (418)
T 3rq1_A 398 KCQMTGLAEKIYNA 411 (418)
T ss_dssp HHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999864
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=4.7e-20 Score=246.29 Aligned_cols=322 Identities=13% Similarity=0.066 Sum_probs=218.5
Q ss_pred CHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHh-CC--CCCcEEEeCCHHHHHHHHHHhcccccccCC
Q psy15216 10 DPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI-YA--DPREIIWTSGATESNNLAIKGAAHFYKKRG 86 (2602)
Q Consensus 10 p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~-g~--~~~~Iv~t~g~T~al~~~~~~l~~~~~~~g 86 (2602)
|..+++++.+++....+. ....|........+.+.+.+++++.. |. ++++|++|+|+++|+.+++.++. ++|
T Consensus 103 P~~~~~~~~~~l~~~~~~-~~~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l~----~~g 177 (498)
T 3ihj_A 103 PEDAKKRARRILQACGGN-SLGSYSASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILV----SGG 177 (498)
T ss_dssp CHHHHHHHHHHHHHC-----------CCSCHHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHHC----CCC
T ss_pred CHHHHHHHHHHHHhccCC-CCCCCCCCCCHHHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHHc----CCC
Confidence 566667777776642110 11112222222233444444444444 34 67899999999999999999987 676
Q ss_pred C----EEEEcCCCCcccHHHHHHHHhCCcEEEEeccCC--CCccChHHHHhhccC-----CceEEEEecccCccccccc-
Q psy15216 87 K----HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICS-----DTILVSVMLVNNEIGVIQP- 154 (2602)
Q Consensus 87 d----~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~ld~e~l~~~i~~-----~tklv~i~~~~npTG~~~~- 154 (2602)
| .|+++.|.|+++...+... |++++.+++++ ++.+|+++|++++++ ++++|++++|+||||.+++
T Consensus 178 d~~~d~Vlv~~p~y~~~~~~~~~~---g~~~v~~~~~~~~~~~~d~~~le~~l~~~~~~~~~k~i~l~np~NPTG~v~s~ 254 (498)
T 3ihj_A 178 GKSRTGVMIPIPQYPLYSAVISEL---DAIQVNYYLDEENCWALNVNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQSR 254 (498)
T ss_dssp GGGSEEEEEEESCCTHHHHHHHHT---TCEEEEEECBGGGTTBCCHHHHHHHHHHHTTTSEEEEEEEESSCTTTCCCCCH
T ss_pred CCCCCEEEEeCCCchhHHHHHHHc---CCEEEEeeccccccCCCCHHHHHHHHHhhhccCCCeEEEEECCCCCCCCcCCH
Confidence 4 9999999999987777665 99999998875 457999999999976 6899999999999999998
Q ss_pred --HHHHHHHHHhcCCEEEEeccccccccc-----ccCCCC----------Cc-cEEEecccccc-CCCC--cEEEEE---
Q psy15216 155 --ILEIGELCRSKGVIFHCDAAQAVGKID-----INIQNY----------KV-DLMSFSAHKIY-GPKG--IGALYI--- 210 (2602)
Q Consensus 155 --l~~I~~la~~~g~~livD~a~a~g~~~-----~dl~~~----------~~-D~~~~S~~K~~-Gp~G--~G~l~~--- 210 (2602)
+++|+++|++||+++|+|++|+..... ..+... .. .+++.|+||.+ |++| +||+++
T Consensus 255 ~~l~~i~~la~~~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~~~~~~ 334 (498)
T 3ihj_A 255 KCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINL 334 (498)
T ss_dssp HHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCCEEEEEESC
T ss_pred HHHHHHHHHHHHcCcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcccceEEEEEecC
Confidence 556888999999999999998753321 111111 11 26777999976 7677 799984
Q ss_pred ecCCCCcccceecCCCccccccccCcchhHHHHHHHHHH----------HHHHhHHHHHHHHHHHHHHHHHHHhhccCce
Q psy15216 211 RRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFR----------LARIEMKEELKRILFLQKRLYNGLMESIEEI 280 (2602)
Q Consensus 211 ~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~----------~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~ 280 (2602)
++++++.+.... . ...+++.++..++.++++ .......+.++++.++++++.+.|.+ +||+
T Consensus 335 ~~~l~~~l~~~~-------~-~~~~~~~~~q~a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~-~~g~ 405 (498)
T 3ihj_A 335 HPEIKGQLVKLL-------S-VRLCPPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQ-VPGI 405 (498)
T ss_dssp CHHHHHHHHHHH-------H-HSCCCCHHHHHHHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHT-STTE
T ss_pred CHHHHHHHHHHH-------h-ccCCCCHHHHHHHHHHhcCCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCc
Confidence 555555554322 1 123456666666666653 11123467778889999999999988 6898
Q ss_pred EEeCCCCCCCCceEEEEEc------------ccChhHH-HHH-h--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCC
Q psy15216 281 YINGDMNNRIPHNLNISFN------------FIEGESL-LMA-I--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHS 344 (2602)
Q Consensus 281 ~l~~~~~~~~~~~~~~~~~------------~~~~~~~-~~~-L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~ 344 (2602)
.+..+... ...++.+. +.+.+.+ +.. | +||.+.+|..|... ...+
T Consensus 406 ~~~~p~gg---~~~~~~l~~p~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pG~~f~~~----------------~~~~ 466 (498)
T 3ihj_A 406 HCNPLQGA---MYAFPRIFIPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQR----------------EGTY 466 (498)
T ss_dssp ECCCCCBS---SEECCEECCCHHHHHHHHHTTSCHHHHHHHHHHHHHCBCCEEGGGTCCC----------------TTCC
T ss_pred EecCCCeE---EEEEEeccCchhhhHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCC----------------CCCC
Confidence 87755432 12222222 1233333 233 3 69999999988642 1136
Q ss_pred eEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 345 SIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 345 ~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
++|++++ .++++++.++++|++.
T Consensus 467 ~~Ris~~--~~~e~l~~~i~~L~~~ 489 (498)
T 3ihj_A 467 HFRMTIL--PPVEKLKTVLQKVKDF 489 (498)
T ss_dssp BEEEECC--SCHHHHHHHHHHHHHH
T ss_pred EEEEEeC--CCHHHHHHHHHHHHHH
Confidence 8999996 6899999999999863
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.9e-20 Score=247.13 Aligned_cols=295 Identities=12% Similarity=0.054 Sum_probs=209.4
Q ss_pred HHHHHHHHHHHhCCCCCcEEEeCCHHHHH--HHHHHhhhhhhcc--C----------CCEEEEcCCCCcchHHHHHHHHh
Q psy15216 1439 IEKARNEVAQLIYADPREIIWTSGATESN--NLAIKGAAHFYKK--R----------GKHIITVQTEHKSVLDSIRKLEN 1504 (2602)
Q Consensus 1439 ~~~lr~~ia~~~g~~~~~iv~t~gaT~al--~~al~~l~~~~~~--~----------gd~Vlv~~~~~~s~~~~~~~~~~ 1504 (2602)
..++|+++++++++++++|++|+|+++++ ++++.++. + + ||+|++++|+|+++...++.+
T Consensus 80 ~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~~~l~----~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~~~~~~-- 153 (427)
T 3ppl_A 80 IVDIRQIWADLLGVPVEQVLAGDASSLNIMFDVISWSYI----FGNNDSVQPWSKEETVKWICPVPGYDRHFSITERF-- 153 (427)
T ss_dssp CHHHHHHHHHHHTSCGGGEEECSSCHHHHHHHHHHHHHH----HCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHT--
T ss_pred cHHHHHHHHHHhCCCcceEEEeCCcHHHHHHHHHHHHHh----ccCCcccccccCCCCCEEEEcCCCcHHHHHHHHHc--
Confidence 57899999999999999999999999999 58888876 4 5 899999999999987766655
Q ss_pred CCcEEEEeccCCCCCcChhHHHhhcc-CCceEEEEe-ccccccccccChH---HHHHHh-hhcCCEEEEecccccCc---
Q psy15216 1505 DGFRVTYLKPKNNGLITLSQLEEKIC-SDTILVSVM-LVNNEIGVIQPIL---EIGELC-RSKGVIFHCDAAQAVGK--- 1575 (2602)
Q Consensus 1505 ~G~~v~~v~~~~~~~id~d~l~~~i~-~~t~lv~l~-~~~n~tG~~~~l~---~I~~ia-~~~gi~vivD~a~~~g~--- 1575 (2602)
|++++.++.+.++ +|+++|+++++ +++++|+++ +++||||.++|.+ +|+++| ++||+++|+|++|+...
T Consensus 154 -g~~~~~v~~~~~g-~d~~~l~~~l~~~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De~y~~~~~~~ 231 (427)
T 3ppl_A 154 -GFEMISVPMNEDG-PDMDAVEELVKNPQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAYAVHTLTD 231 (427)
T ss_dssp -TCEEEEEEEETTE-ECHHHHHHHTTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSS
T ss_pred -CCEEEEeCCCCCC-CCHHHHHHHHhcCCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEECCCcccccCC
Confidence 9999999988765 99999999995 788988865 8999999999976 888998 99999999999987421
Q ss_pred ---ccccC-------CCCCccEEEEccccccCC-CceEEEEEecCCCCccccccccCCccccCCCCCcchhHHHHHHHHH
Q psy15216 1576 ---IDINI-------QNYKVDLMSFSAHKIYGP-KGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAF 1644 (2602)
Q Consensus 1576 ---~~~~l-------~~~~~D~~v~S~~K~~gp-~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL 1644 (2602)
.++++ ...+.++++.|+||.++| -++||++.++++++.+..... ....+.+...+.++..++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~G~r~G~~~~~~~l~~~~~~~~~-------~~~~~~~~~~q~~~~~~l 304 (427)
T 3ppl_A 232 EFPEVIDIVGLGEAAGNPNRFWAFTSTSKITLAGAGVSFFLTSAENRKWYTGHAG-------IRGIGPNKVNQLAHARYF 304 (427)
T ss_dssp CCCCCCCHHHHHHHTTCTTSEEEEEESTTTSCTTSSCEEEECCHHHHHHHHHHHH-------HHCSCCCHHHHHHHHHHH
T ss_pred CCCCccchhhhhhccCCCCcEEEEechhhccCcCccEEEEEcCHHHHHHHHHHhh-------cccCCCCHHHHHHHHHHH
Confidence 11111 133567899999996322 238999998776655543321 111234445555555555
Q ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHhhcCC---cEEEeCCCCCCCCceEEEEEecCCcHHHHHhc--CCEEEccccc
Q psy15216 1645 RL---ARIEMKEELKRILFLQKRLYNGLMESIE---EIYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDIAVSSGSA 1716 (2602)
Q Consensus 1645 ~~---~~~~~~~~~~~~~~l~~~l~~~L~~~~~---gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~v~~g~~ 1716 (2602)
.. ....+.+..+++.++++.+.+.|.+.++ ++.+..+.. .....+.++..+..++...| +||.+++|..
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~---g~~~~~~~~~~~~~~~~~~l~~~gv~v~~~g~ 381 (427)
T 3ppl_A 305 GDAEGVRAVMRKHAASLAPKFNKVLEILDSRLAEYGVAQWTVPAG---GYFISLDVVPGTASRVAELAKEAGIALTGAGS 381 (427)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEECCCSB---SSCEEEECSTTCHHHHHHHHHHTTEECCCTTT
T ss_pred hChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeCCCc---cEEEEEECCcchHHHHHHHHHHCCCEEecCcC
Confidence 42 2344566666667777777666654322 455543322 23344455544456666655 8999999544
Q ss_pred cCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1717 CTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1717 ~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
|... ......+++|||++.. +.+++++++++|++.
T Consensus 382 ~~~~-------------~~~~~~~~~Ris~~~~-~~~~i~~~~~~l~~~ 416 (427)
T 3ppl_A 382 SYPL-------------RQDPENKNLRLAPSLP-PVEELEVAMDGVATC 416 (427)
T ss_dssp TSGG-------------GCCTTSCEEEECCSSS-CHHHHHHHHHHHHHH
T ss_pred cCCC-------------CCCCCCCeEEEECCCC-CHHHHHHHHHHHHHH
Confidence 3221 0011248999999754 899999999999874
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.3e-20 Score=249.06 Aligned_cols=291 Identities=14% Similarity=0.095 Sum_probs=218.4
Q ss_pred HHHHHHHHHHHh-----CCCCCc---EEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEE
Q psy15216 1439 IEKARNEVAQLI-----YADPRE---IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVT 1510 (2602)
Q Consensus 1439 ~~~lr~~ia~~~-----g~~~~~---iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~ 1510 (2602)
..++|+.+++++ ++++++ |++|+|+++|+++++.++. ++||+|++++|.|+++...+.. ..|++++
T Consensus 90 ~~~lr~~ia~~~~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~----~~gd~Vl~~~p~y~~~~~~~~~--~~g~~~~ 163 (430)
T 2x5f_A 90 IEELRDLWQQKMLRDNPELSIDNMSRPIVTNALTHGLSLVGDLFV----NQDDTILLPEHNWGNYKLVFNT--RNGANLQ 163 (430)
T ss_dssp CHHHHHHHHHHHHHHCTTCCGGGBCCCEEESHHHHHHHHHHHHHC----CTTCEEEEESSCCTHHHHHHTT--TTCCEEE
T ss_pred CHHHHHHHHHHHhccCcccCCCccceEEEcCCchHHHHHHHHHHh----CCCCEEEEcCCcCccHHHHHHH--hcCCeEE
Confidence 467889999998 888888 9999999999999999986 8999999999999997665443 0499999
Q ss_pred EeccCC-CCCcChhHHHhhccC---CceEEEEeccccccccccC---hHHHHHHhhh-----cCCEEEEecccccCcc--
Q psy15216 1511 YLKPKN-NGLITLSQLEEKICS---DTILVSVMLVNNEIGVIQP---ILEIGELCRS-----KGVIFHCDAAQAVGKI-- 1576 (2602)
Q Consensus 1511 ~v~~~~-~~~id~d~l~~~i~~---~t~lv~l~~~~n~tG~~~~---l~~I~~ia~~-----~gi~vivD~a~~~g~~-- 1576 (2602)
.++.++ ++.+|+++|++++++ +++++++++|+||||.++| +++|.++|++ ||+++|+|++|+....
T Consensus 164 ~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~ 243 (430)
T 2x5f_A 164 TYPIFDKDGHYTTDSLVEALQSYNKDKVIMILNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYED 243 (430)
T ss_dssp EECCBCTTSCBCSHHHHHHHHHCCSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSS
T ss_pred EEeccCccCCcCHHHHHHHHHhcCCCCEEEEEcCCCCCCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCc
Confidence 998865 467999999999987 8999999999999999999 8899999999 9999999999874321
Q ss_pred ----cc--cCCC-CCc---cEEEEccccccCCCc--eEEEEE---ecCCCCccccccccCCccccCCCCCcchhHHHHHH
Q psy15216 1577 ----DI--NIQN-YKV---DLMSFSAHKIYGPKG--IGALYI---RRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMG 1641 (2602)
Q Consensus 1577 ----~~--~l~~-~~~---D~~v~S~~K~~gp~G--~G~l~~---~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~ 1641 (2602)
++ ++.. .+. ++++.|+||.+|++| +||+++ ++++++.+....... .+...++++...+.++.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~a~~ 320 (430)
T 2x5f_A 244 VYTQSLFTALTNLHSNAILPIRLDGATKEFFAWGFRVGFMTFGTSDQTTKEVLEAKVKGL---IRSNISSGPLPTQSAVK 320 (430)
T ss_dssp SCCSCHHHHHHTTCCTTEEEEEEEEHHHHTTCGGGCCEEEEEBCCCHHHHHHHHHHHHHH---HHTTTSSCCHHHHHHHH
T ss_pred ccchHHHHHHhhccCCcceEEEEEecccCCCCCCCCeEEEEEecCCHHHHHHHHHHHhhh---hhcccCCCChHHHHHHH
Confidence 21 2322 334 688899999888778 799999 776666554322110 00123456777777777
Q ss_pred HHHH-HH--HHHHHHHHHHHHHHHHHHHHHHhhcC--CcEEEeCCCCCCCCceEEEEEecCCcHHHHHhc---CCEEEcc
Q psy15216 1642 EAFR-LA--RIEMKEELKRILFLQKRLYNGLMESI--EEIYINGDMNNRIPHNLNISFNFIEGESLLMAI---KDIAVSS 1713 (2602)
Q Consensus 1642 ~aL~-~~--~~~~~~~~~~~~~l~~~l~~~L~~~~--~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~L---~gI~v~~ 1713 (2602)
++|+ .. ...+++.++++.++++++.+.|.+.. .++.+..+.. +....+.+++.+..++...| +||.+++
T Consensus 321 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~---g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~ 397 (430)
T 2x5f_A 321 HVLKNNKQFDKEIEQNIQTLKERYEVTKEVVYADQYHSHWQAYDFNS---GYFMAIKVHDVDPEALRKHLIDKYSIGVIA 397 (430)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTCGGGTTTEEECCCCB---SSEEEEEESSSCHHHHHHHHHHHHCEECEE
T ss_pred HHHccChHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCceeeCCCc---eEEEEeCCCCCCHHHHHHHHHHhCCEEEec
Confidence 7777 32 22345588889999999999997311 3677654322 22344445544556666655 5899887
Q ss_pred ccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1714 GSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1714 g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
| . .+++||+++. ++.+++++++++|++.
T Consensus 398 g----~-------------------~~~iRis~~~-~~~e~i~~~~~~l~~~ 425 (430)
T 2x5f_A 398 L----N-------------------ATDIRIAFSC-VEKDDIPHVFDSIAKA 425 (430)
T ss_dssp C----S-------------------SSEEEEEGGG-SCGGGHHHHHHHHHHH
T ss_pred C----C-------------------CCeEEEEEec-CCHHHHHHHHHHHHHH
Confidence 6 1 1789999985 5889999999999873
|
| >2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.1e-19 Score=236.71 Aligned_cols=334 Identities=15% Similarity=0.134 Sum_probs=227.7
Q ss_pred CCCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhcc
Q psy15216 1401 ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKK 1480 (2602)
Q Consensus 1401 ~~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~ 1480 (2602)
...+.|+.+.+++.+.++..+ ++. ......++|+.++++++.+ ++++|+|+|+|+++++.++.
T Consensus 26 p~~~~p~~~~~a~~~~~~~~~-y~~---------~~~~~~~l~~~la~~~~~~--~v~~~~ggt~al~~~l~~l~----- 88 (424)
T 2po3_A 26 PNRIDRARLYERLDRALDSQW-LSN---------GGPLVREFEERVAGLAGVR--HAVATCNATAGLQLLAHAAG----- 88 (424)
T ss_dssp CCCCCHHHHHHHHHHHHHHTC-CSS---------SCHHHHHHHHHHHHHHTSS--EEEEESCHHHHHHHHHHHHT-----
T ss_pred CCCCChHHHHHHHHHHHhcCC-ccc---------CCHHHHHHHHHHHHHhCCC--eEEEeCCHHHHHHHHHHHcC-----
Confidence 344557788999988886521 221 0134678999999999974 89999999999999999874
Q ss_pred CCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCC-CCCcChhHHHhhccCCceEEEEeccccccccccChHHHHHHhh
Q psy15216 1481 RGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCR 1559 (2602)
Q Consensus 1481 ~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~-~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~~ia~ 1559 (2602)
+||+|++++++|+++...+... |++++.++.++ ++.+|+++|++++++++++|+++| |||...++++|.++|+
T Consensus 89 ~gd~Vlv~~~~~~~~~~~~~~~---G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~---~tG~~~~l~~i~~la~ 162 (424)
T 2po3_A 89 LTGEVIMPSMTFAATPHALRWI---GLTPVFADIDPDTGNLDPDQVAAAVTPRTSAVVGVH---LWGRPCAADQLRKVAD 162 (424)
T ss_dssp CCSEEEEESSSCTHHHHHHHHT---TCEEEEECBCTTTSSBCHHHHGGGCCTTEEEEEEEC---GGGCCCCHHHHHHHHH
T ss_pred CCCEEEECCCccHHHHHHHHHc---CCEEEEEecCCCcCCcCHHHHHHhhCcCCcEEEEEC---CCCCcCCHHHHHHHHH
Confidence 6899999999999988766554 99999999886 677999999999999999999865 6999999999999999
Q ss_pred hcCCEEEEecccccCcccccCCCCC--ccEEEEccc--cccCCCceEEEEEe-cCCCCccccccccCCcc-cc-CCCCCc
Q psy15216 1560 SKGVIFHCDAAQAVGKIDINIQNYK--VDLMSFSAH--KIYGPKGIGALYIR-RNPRTRIEAQIHGGGHE-YG-LRSGTL 1632 (2602)
Q Consensus 1560 ~~gi~vivD~a~~~g~~~~~l~~~~--~D~~v~S~~--K~~gp~G~G~l~~~-~~~~~~l~~~~~g~~~~-~~-~~~gt~ 1632 (2602)
+||+++|+|++|+.|.. ++....+ .|++++|+| |.+++..+|+++.+ +++++.+.+....+... .. ...|..
T Consensus 163 ~~~~~li~Dea~~~g~~-~~~~~~~~~~di~~~S~sk~K~l~~~~~G~~v~~~~~l~~~l~~~~~~~~~~~~~~~~~g~~ 241 (424)
T 2po3_A 163 EHGLRLYFDAAHALGCA-VDGRPAGSLGDAEVFSFHATKAVNAFEGGAVVTDDADLAARIRALHNFGFDLPGGSPAGGTN 241 (424)
T ss_dssp HTTCEEEEECTTCTTCE-ETTEETTSSSSEEEEECCTTSSSCCSSCEEEEESCHHHHHHHHHHHBTTTTCTTCCTTCCCB
T ss_pred HcCCEEEEECccccCCe-ECCeecccccCEEEEeCCCCCCccCCCCeEEEeCCHHHHHHHHHHHhcCccccccccccCcC
Confidence 99999999999997654 2211111 589999998 65555347999988 56665555433222110 00 011111
Q ss_pred -chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCC--CCCceEEEEEe----cCCcHHHHHh
Q psy15216 1633 -ATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNN--RIPHNLNISFN----FIEGESLLMA 1705 (2602)
Q Consensus 1633 -~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~--~~~~~~~~~~~----~~~~~~~~~~ 1705 (2602)
.+..+. ...++.. ...++...++..++++++.+.|.+ ++++.+..++.. ..+.++.+.++ +.+..++...
T Consensus 242 ~~~~~~~-aa~~l~~-~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~ 318 (424)
T 2po3_A 242 AKMSEAA-AAMGLTS-LDAFPEVIDRNRRNHAAYREHLAD-LPGVLVADHDRHGLNNHQYVIVEIDEATTGIHRDLVMEV 318 (424)
T ss_dssp CCCCHHH-HHHHHHH-HHHHHHHHHHHHHHHHHHHHHTCS-CTTEEECCGGGGSCCCCCCEEEEECHHHHSSCHHHHHHH
T ss_pred CCcCHHH-HHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcc-CCCccccCCCCCCccccEEEEEEECCccchhhHHHHHHH
Confidence 112222 2233322 234667888888999999999987 678888753221 11234445555 2456667666
Q ss_pred c--CCEEEccccccCCCC-CChhHHHHHcC---CC--ccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1706 I--KDIAVSSGSACTSAS-LEPSYVLRALG---CN--DELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1706 L--~gI~v~~g~~~~~~~-~~~~~~~~~~~---~~--~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
| +||.+++ .|.++. ..+.+ ..++ .. .......+|++++.++|.+|+++++++|++.
T Consensus 319 L~~~gI~v~~--~~~~~~~~~~~~--~~~g~~~~~~~~r~~~~~l~l~~~~~~t~e~i~~~~~~L~~~ 382 (424)
T 2po3_A 319 LKAEGVHTRA--YFSPGCHELEPY--RGQPHAPLPHTERLAARVLSLPTGTAIGDDDIRRVADLLRLC 382 (424)
T ss_dssp HHHTTEECBC--TTCSCGGGSTTT--TTSCCCCCHHHHHHHTTEEEECCSTTCCHHHHHHHHHHHHHH
T ss_pred HHHCCCceec--ccCCccccchhh--hhcCCCCChhHHHHhcCEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 6 7999876 332110 00000 0000 00 0011245999988999999999999999974
|
| >3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=6.8e-21 Score=251.13 Aligned_cols=333 Identities=15% Similarity=0.171 Sum_probs=219.5
Q ss_pred CCCCCCCHHHHHHHHHHHhhhc--CCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccc
Q psy15216 4 SATTPIDPRVVDKMIPYLRVQF--GNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHF 81 (2602)
Q Consensus 4 a~~~~~p~~v~~a~~~~l~~~~--~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~ 81 (2602)
++..+.++.+.+++.+.+...+ ++|+...+..........+.+++++++++|+++++|++++| ++|+..++.++.
T Consensus 37 ~~~n~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~v~~~sG-s~a~~~a~~~~~-- 113 (420)
T 3gbx_A 37 ASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGADYANVQPHSG-SQANFAVYTALL-- 113 (420)
T ss_dssp TTCCCCCHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHTCSEEECCCSSH-HHHHHHHHHHHC--
T ss_pred ccCCCCCHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhCCCCceeEecCc-HHHHHHHHHHhc--
Confidence 4445689999999999885544 45544222222222345566778999999997766666555 889999998887
Q ss_pred cccCCCEEEEcCCCCcccHHHHHHH--HhCCcEEEEeccCCCCccChHHHHhhccC-CceEEEEecccCcccccccHHHH
Q psy15216 82 YKKRGKHIITVQTEHKSVLDSIRKL--ENDGFRVTYLKPKNNGLITLSQLEEKICS-DTILVSVMLVNNEIGVIQPILEI 158 (2602)
Q Consensus 82 ~~~~gd~Vlv~~~~~~s~~~~~~~~--~~~G~~v~~v~~~~~~~ld~e~l~~~i~~-~tklv~i~~~~npTG~~~~l~~I 158 (2602)
++||+|+++.++|+++...+... ...+.....++.+.++.+|+++|++++++ ++++|++++++|| ...|+++|
T Consensus 114 --~~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~--~~~~l~~l 189 (420)
T 3gbx_A 114 --QPGDTVLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGIDESGKIDYDEMAKLAKEHKPKMIIGGFSAYS--GVVDWAKM 189 (420)
T ss_dssp --CTTCEEEEEEEC------------CHHHHSEEEEEEECTTCSCCHHHHHHHHHHHCCSEEEECCTTCC--SCCCHHHH
T ss_pred --CCCCEEEecchhhcceeccchhhhhcccceeEEeccCCccCCcCHHHHHHHHHhcCCeEEEEecCccC--CccCHHHH
Confidence 89999999999999854333222 12245666666677788999999999986 5999999998885 47899999
Q ss_pred HHHHHhcCCEEEEecccccccc-----cccCCCCCccEEEecccccc-CCCCcEEEEEec---CCCCcccceecCCCccc
Q psy15216 159 GELCRSKGVIFHCDAAQAVGKI-----DINIQNYKVDLMSFSAHKIY-GPKGIGALYIRR---NPRTRIEAQIHGGGHEY 229 (2602)
Q Consensus 159 ~~la~~~g~~livD~a~a~g~~-----~~dl~~~~~D~~~~S~~K~~-Gp~G~G~l~~~~---~~~~~l~~~~~g~~~~~ 229 (2602)
.++|++||+++|+|++|+.+.. +..+. .+|++++|+||.+ ||.| |+++.++ ++.+.+.+....
T Consensus 190 ~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~--~~di~~~s~sK~~~g~~g-g~~~~~~~~~~~~~~~~~~~~~----- 261 (420)
T 3gbx_A 190 REIADSIGAYLFVDMAHVAGLIAAGVYPNPVP--HAHVVTTTTHKTLAGPRG-GLILAKGGDEELYKKLNSAVFP----- 261 (420)
T ss_dssp HHHHHHTTCEEEEECTTTHHHHHTTSSCCSTT--TSSEEEEESSGGGCSCSC-EEEEESSCCHHHHHHHHHHHC------
T ss_pred HHHHHHcCCEEEEECCcchhceecccCCcccc--cCCEEEeecccCCCCCCc-eEEEEcCCcHHHHHHhhhhcCC-----
Confidence 9999999999999999876543 22222 3789999999966 7886 9999987 444444332211
Q ss_pred cccccCcchhHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc--cChhHH
Q psy15216 230 GLRSGTLATHQIVGMGEAFRL-ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF--IEGESL 306 (2602)
Q Consensus 230 ~~~~gt~~~~~~~al~~al~~-~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~--~~~~~~ 306 (2602)
...++++...+.++..++.. ...++++..++..++++++.+.|.+ .++.+..+... ...+.+.++. .+...+
T Consensus 262 -~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~--~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 336 (420)
T 3gbx_A 262 -SAQGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVFLN--RGYKVVSGGTE--NHLFLLDLVDKNLTGKEA 336 (420)
T ss_dssp ----CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHH--TTCEEGGGSCS--SSEEEEECGGGTCCHHHH
T ss_pred -CCCCCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHh--cCCeeccCCCC--CeEEEEEcCCCCCCHHHH
Confidence 11346666777776666653 2355688899999999999999987 68887653221 2334444432 344555
Q ss_pred HHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCC----CCHHHHHHHHHHHHhh
Q psy15216 307 LMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRF----TTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 307 ~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~----~t~edid~li~~L~~~ 369 (2602)
...| +||.+++....... + .......+||++... .+++++++++++|++.
T Consensus 337 ~~~l~~~gi~v~~~~~~~~~-----------~--~~~~~~~iRi~~~~~~~~~~~~~~i~~~~~~l~~~ 392 (420)
T 3gbx_A 337 DAALGRANITVNKNSVPNDP-----------K--SPFVTSGIRIGSPAVTRRGFKEAEVKELAGWMCDV 392 (420)
T ss_dssp HHHHHHTTEECEEECCTTCS-----------S--CTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCcEeccccCCCCc-----------c--ccCCCcceEEecchhcccCCCHHHHHHHHHHHHHH
Confidence 5555 69999873221100 0 001125699998644 3589999999999874
|
| >3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B | Back alignment and structure |
|---|
Probab=99.84 E-value=2.7e-20 Score=242.16 Aligned_cols=298 Identities=13% Similarity=0.093 Sum_probs=199.3
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHHH-HhCCcEEEEeccC
Q psy15216 1437 KAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDGFRVTYLKPK 1515 (2602)
Q Consensus 1437 ~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~-~~~G~~v~~v~~~ 1515 (2602)
....++|+.+++++|.+ +.++++ ++++|++.++. +. ++||+|+++++.|+++...+..+ +..|+++++++.+
T Consensus 67 p~~~~l~~~la~~~g~~-~~i~~~-sG~~ai~~~~~-l~----~~gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~ 139 (403)
T 3cog_A 67 PTRNCLEKAVAALDGAK-YCLAFA-SGLAATVTITH-LL----KAGDQIICMDDVYGGTNRYFRQVASEFGLKISFVDCS 139 (403)
T ss_dssp HHHHHHHHHHHHHHTCS-EEEEES-CHHHHHHHHHT-TS----CTTCEEEEESSCCHHHHHHHHHTGGGGTCEEEEECTT
T ss_pred chHHHHHHHHHHHhCCC-cEEEEC-CHHHHHHHHHH-Hh----CCCCEEEEeCCCcchHHHHHHHHHHHcCCEEEEECCC
Confidence 34688999999999976 455555 55799999988 65 89999999999999877665433 5569999999865
Q ss_pred CCCCcChhHHHhhccCCceEEEEeccccccccccChHHHHHHhhhcC-CEEEEecccccCcccccCCCCCccEEEEcccc
Q psy15216 1516 NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKG-VIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK 1594 (2602)
Q Consensus 1516 ~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~~ia~~~g-i~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K 1594 (2602)
|+++++++++++|++|++++|+||||.+.|+++|.++|++|| +++++|++|+.+....++ .+++|+++.|+||
T Consensus 140 -----d~~~l~~~i~~~t~~v~~~~p~nptG~~~~l~~i~~la~~~g~~~livD~~~~~~~~~~~~-~~~~div~~S~sK 213 (403)
T 3cog_A 140 -----KIKLLEAAITPETKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMSPYFQRPL-ALGADISMYSATK 213 (403)
T ss_dssp -----SHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHTSSSCCEEEEECTTTCTTTCCTT-TTTCSEEEEETTT
T ss_pred -----CHHHHHHhcCcCCeEEEEECCCCCCCeeeCHHHHHHHHHHcCCCEEEEECCCcccccCCcc-ccCCeEEEEcChh
Confidence 899999999999999999999999999999999999999999 999999999887533333 2679999999999
Q ss_pred ccC-CCc--eEEEEEe-cCCCCccccccccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15216 1595 IYG-PKG--IGALYIR-RNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLM 1670 (2602)
Q Consensus 1595 ~~g-p~G--~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~ 1670 (2602)
++| +.| +|+++++ +++.+.+.+...++ .++.+....+++..+++.+. ...++..+.+..+.+.+.
T Consensus 214 ~~~g~~~~~~G~v~~~~~~l~~~l~~~~~~~-------g~~~~~~~~~~~~~~l~~l~----~r~~~~~~n~~~l~~~l~ 282 (403)
T 3cog_A 214 YMNGHSDVVMGLVSVNCESLHNRLRFLQNSL-------GAVPSPIDCYLCNRGLKTLH----VRMEKHFKNGMAVAQFLE 282 (403)
T ss_dssp TTTCSSCCCCEEEEECCHHHHHHHHHHHHHH-------CCCCCHHHHHHHHHHHTTHH----HHHHHHHHHHHHHHHHHH
T ss_pred hccCCCCCeEEEEEECcHHHHHHHHHHHHhc-------CCCCCHHHHHHHHhhhhHHH----HHHHHHHHHHHHHHHHHh
Confidence 554 555 4999986 45555555433221 12344444444445555332 233334444444555554
Q ss_pred hcCCcE--------------EEeCCCCCCCCceEEEEEecCC--cHHHHHhcCCEEEc---ccc------ccCCCC--CC
Q psy15216 1671 ESIEEI--------------YINGDMNNRIPHNLNISFNFIE--GESLLMAIKDIAVS---SGS------ACTSAS--LE 1723 (2602)
Q Consensus 1671 ~~~~gl--------------~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~L~gI~v~---~g~------~~~~~~--~~ 1723 (2602)
+ .+.+ .+..+.......+..+.+++.. ...++.. .+|.++ .|. +|.... ..
T Consensus 283 ~-~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~l~~-~~i~~~~~s~G~~~sl~~~p~~~~~~~~ 360 (403)
T 3cog_A 283 S-NPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKGTLQHAEIFLKN-LKLFTLAESLGGFESLAELPAIMTHASV 360 (403)
T ss_dssp T-CTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCHHHHHHHHHH-CSSSEECSCCSSSSCEEECTTTTTTTTS
T ss_pred c-CCCEEEEECCCCCCCCcHHHHHhcCCCCceEEEEEecCCHHHHHHHHHh-CCcceEccCCCCcceeeecccccccccC
Confidence 4 2222 1111111112344444443221 1233333 355332 232 232211 22
Q ss_pred hhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1724 PSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1724 ~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
+......+|.. .++||||++.++++++|+++.++|++
T Consensus 361 ~~~~~~~~g~~----~~~iRlSvg~e~~~d~i~~l~~al~~ 397 (403)
T 3cog_A 361 LKNDRDVLGIS----DTLIRLSVGLEDEEDLLEDLDQALKA 397 (403)
T ss_dssp CHHHHHHHTCC----TTEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred CHHHHHhcCCC----cCeEEEEeCCCCHHHHHHHHHHHHHH
Confidence 34455566764 38999999999999999999999986
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.9e-20 Score=243.09 Aligned_cols=315 Identities=14% Similarity=0.104 Sum_probs=217.6
Q ss_pred CCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHH--hC-CCCCcEEEeCCHHHHHHHHHHhhhhhhc
Q psy15216 1403 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQL--IY-ADPREIIWTSGATESNNLAIKGAAHFYK 1479 (2602)
Q Consensus 1403 ~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~--~g-~~~~~iv~t~gaT~al~~al~~l~~~~~ 1479 (2602)
.+.++.+.+++.+.++..........|.. .....++|++++++ +| +++++|++|+|+++++..++ .+.
T Consensus 45 ~~~~~~v~~a~~~~~~~~~~~~~~~~y~~----~~g~~~lr~~la~~l~~g~~~~~~v~~~~G~~~al~~~~-~~~---- 115 (400)
T 3asa_A 45 QPLNASVAEAFASSIARLSSPTTCRGYGP----DFGLPALRQKLSEDFYRGFVDAKEIFISDGAKVDLFRLL-SFF---- 115 (400)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSSCCCCCCC----TTCCHHHHHHHHHTTSTTSSCGGGEEEESCHHHHHHHHH-HHH----
T ss_pred CCCCHHHHHHHHHHHhcccccccccCCCC----CCCCHHHHHHHHHHHHcCCCCHHHEEEccChHHHHHHHH-HHc----
Confidence 35678899999988865321111101110 12356889999999 57 67889999999999999865 343
Q ss_pred cCCCEEEEcCCCCcchHHHHHHHHhCCcE-EEEeccCCCCCcChhHHHhhccCCceEEEEeccccccccccC---hHHHH
Q psy15216 1480 KRGKHIITVQTEHKSVLDSIRKLENDGFR-VTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIG 1555 (2602)
Q Consensus 1480 ~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~-v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~---l~~I~ 1555 (2602)
++||+|+++.|+|+++...+... |.+ ++.++.++++.++.+ +++ + +++++|++++|+||||.++| +++|+
T Consensus 116 ~~gd~Vl~~~p~y~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~-l~~-~-~~~~~v~l~~p~nptG~~~~~~~l~~l~ 189 (400)
T 3asa_A 116 GPNQTVAIQDPSYPAYLDIARLT---GAKEIIALPCLQENAFFPE-FPE-D-THIDILCLCSPNNPTGTVLNKDQLRAIV 189 (400)
T ss_dssp CSSCEEEEEESCCHHHHHHHHHT---TCSEEEEEECCGGGTTCCC-CCT-T-CCCSEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred CCCCEEEECCCCcHHHHHHHHHc---CCcceEecccchhcCcccC-hhh-c-cCccEEEEeCCCCCCCCcCCHHHHHHHH
Confidence 68999999999999987665444 887 888987653322221 222 1 67899999999999999998 56788
Q ss_pred HHhhhcCCEEEEecccc-c---CcccccCCCC----CccEEEEccccccCCCc--eEEEEEecCCC-------Ccccccc
Q psy15216 1556 ELCRSKGVIFHCDAAQA-V---GKIDINIQNY----KVDLMSFSAHKIYGPKG--IGALYIRRNPR-------TRIEAQI 1618 (2602)
Q Consensus 1556 ~ia~~~gi~vivD~a~~-~---g~~~~~l~~~----~~D~~v~S~~K~~gp~G--~G~l~~~~~~~-------~~l~~~~ 1618 (2602)
++|++||+++|+|++|+ + +..+.++..+ +.++++.|+||.+|++| +||+++++++. ..+....
T Consensus 190 ~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~GlriG~~~~~~~~~~~~~~~~~~~~~~~ 269 (400)
T 3asa_A 190 HYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDARFCAIEINSFSKPLGFAGIRLGWTVIPQELTYADGHFVIQDWERF 269 (400)
T ss_dssp HHHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECCGGGTTTTCCCEEEECCTTCBCTTSCBHHHHHHHH
T ss_pred HHHHHcCCEEEEEchhhhhhcCCCCCCchhhCCCCCCceEEEecchhhcCCcchheeEEeeChhhccchhhhHHHHHHHH
Confidence 89999999999999997 3 2222333322 23588999999888778 79999988763 2221100
Q ss_pred ccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEE-Ee-c
Q psy15216 1619 HGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNIS-FN-F 1696 (2602)
Q Consensus 1619 ~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~-~~-~ 1696 (2602)
.....++.+.+.+.++..+|+.. ++++.++++.++++++.+.|.+ . ++.+..+.. .....+. ++ .
T Consensus 270 ------~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~---~~~~~~~~~~~~ 336 (400)
T 3asa_A 270 ------LSTTFNGASIPAQEAGVAGLSIL--PQLEAIHYYRENSDLLRKALLA-T-GFEVFGGEH---APYLWVKPTQAN 336 (400)
T ss_dssp ------HHHHCCCCCHHHHHHHHHHHHHT--TTCHHHHHHHHHHHHHHHHHHH-T-TCEEEECSS---SSEEEEECCCTT
T ss_pred ------hccCccCCChHHHHHHHHHhCcH--HHHHHHHHHHHHHHHHHHHHHH-C-CCeeeCCCC---ceEEEEeccCCC
Confidence 01112456666666666666532 4677888889999999999987 3 676654322 2233344 33 2
Q ss_pred CCcHHHHHhc---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1697 IEGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1697 ~~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
.+..++...| +||.+++|..|... ..+++||++ +++.+++++++++|++
T Consensus 337 ~~~~~~~~~l~~~~gv~v~~g~~f~~~-----------------~~~~iRis~--~~~~e~i~~~l~~l~~ 388 (400)
T 3asa_A 337 ISDRDLFDFFLREYHIAITPGIGFGRS-----------------GSGFVRFSS--LGKREDILAACERLQM 388 (400)
T ss_dssp CCTTTHHHHHHHHHSEECEEGGGGCGG-----------------GTTCEEEEC--CSCHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHhCCEEEeChhHhCCC-----------------CCCEEEEEe--eCCHHHHHHHHHHHHH
Confidence 2344555544 49999999877531 137899994 5799999999999986
|
| >3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.7e-19 Score=235.32 Aligned_cols=308 Identities=16% Similarity=0.167 Sum_probs=220.7
Q ss_pred CCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccc------c
Q psy15216 9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHF------Y 82 (2602)
Q Consensus 9 ~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~------~ 82 (2602)
.+|.+.+++.+.+......... ...+..+++++++++++| ++++++++|+++|++.++.++... .
T Consensus 53 ~~p~v~~a~~~~~~~~~~~~~~-------~~~~~~~~l~~~la~~~g--~~~v~~~~~gt~a~~~al~~~~~~~~~~~~~ 123 (392)
T 3ruy_A 53 RHPKIINALIDQANRVTLTSRA-------FHSDQLGPWYEKVAKLTN--KEMVLPMNTGAEAVETAIKTARRWAYDVKKV 123 (392)
T ss_dssp TCHHHHHHHHHHHTTCSCCCTT-------SEETTHHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHHHHHHHHHHTSCC
T ss_pred CCHHHHHHHHHHHHhccccccc-------cCCHHHHHHHHHHHHhcC--CCEEEEeCcHHHHHHHHHHHHHHhhhhccCC
Confidence 5799999999988653221111 112357889999999998 569999999999999999977611 0
Q ss_pred ccCCCEEEEcCCCCcccHHHHHHHHhC-C---------cEEEEeccCCCCccChHHHHhhccCCceEEEEecccCccccc
Q psy15216 83 KKRGKHIITVQTEHKSVLDSIRKLEND-G---------FRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVI 152 (2602)
Q Consensus 83 ~~~gd~Vlv~~~~~~s~~~~~~~~~~~-G---------~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~ 152 (2602)
...+|+|++..+.|++....+..+... + ..+..++. .|+++|++++++++++|++++++||||.+
T Consensus 124 ~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~l~~~~~~v~~~~~~nptG~~ 198 (392)
T 3ruy_A 124 EANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPY-----GDLEALKAAITPNTAAFILEPIQGEAGIN 198 (392)
T ss_dssp CTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEEECT-----TCHHHHHHHCCTTEEEEEECSSBSTTTSB
T ss_pred CCCCcEEEEEcCCcCCCCHhhhhccCChhhccccCCCCCCCeeeCc-----ccHHHHHHHhccCeEEEEEeCccCCCCCc
Confidence 023679999999998876555443111 0 11333332 28999999999999999999999999999
Q ss_pred cc----HHHHHHHHHhcCCEEEEecccc-ccc----ccccCCCCCccEEEeccccccCC--CCcEEEEEecCCCCcccce
Q psy15216 153 QP----ILEIGELCRSKGVIFHCDAAQA-VGK----IDINIQNYKVDLMSFSAHKIYGP--KGIGALYIRRNPRTRIEAQ 221 (2602)
Q Consensus 153 ~~----l~~I~~la~~~g~~livD~a~a-~g~----~~~dl~~~~~D~~~~S~~K~~Gp--~G~G~l~~~~~~~~~l~~~ 221 (2602)
+| +++|.++|++||+++|+|++|+ ++. ...+.....+|++++ +|.+++ ..+|++++++++++.+.+.
T Consensus 199 ~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~--SK~l~gG~~~~G~~~~~~~~~~~~~~~ 276 (392)
T 3ruy_A 199 IPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVFACDWDNVTPDMYIL--GKALGGGVFPISCAAANRDILGVFEPG 276 (392)
T ss_dssp CCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEE--CGGGGTTTSCCEEEEECHHHHTTCCTT
T ss_pred cCCHHHHHHHHHHHHHcCCEEEEeechhCCCccccchhhhccCCCCCEEEE--chhhhCChhhhEEEEECHHHHhhhccC
Confidence 99 9999999999999999999995 332 122223345687755 595433 2379999998877777654
Q ss_pred ecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcc-CceEEeCCCCCCCCceEEEEEcc
Q psy15216 222 IHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESI-EEIYINGDMNNRIPHNLNISFNF 300 (2602)
Q Consensus 222 ~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~-~g~~l~~~~~~~~~~~~~~~~~~ 300 (2602)
..+ ...+++....+++.++++.... ++..++.+++++++.+.|.+.. +.+....+. ..++.+.++.
T Consensus 277 ~~~-------~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~----g~~~~~~~~~ 343 (392)
T 3ruy_A 277 SHG-------STFGGNPLACAVSIAALEVLEE--EKLTERSLQLGEKLVGQLKEIDNPMITEVRGK----GLFIGIELNE 343 (392)
T ss_dssp SSC-------CSSTTCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHTTCCCTTEEEEEEE----TTEEEEEESS
T ss_pred CcC-------CCCCCCHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHhcCCCceEEEee----eeEEEEEEcc
Confidence 321 1336677777777788875443 6778889999999999997721 334333221 2344444554
Q ss_pred cChhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 301 IEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 301 ~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
+..++...| +||.++++. .+++|++++..++++|+++++++|++.
T Consensus 344 -~~~~l~~~l~~~gi~v~~~~-----------------------~~~iRi~~~~~~~~~~i~~~~~~l~~~ 390 (392)
T 3ruy_A 344 -PARPYCEQLKAAGLLCKETH-----------------------ENVIRIAPPLVISEEDLEWAFQKIKAV 390 (392)
T ss_dssp -CSHHHHHHHHTTTEECCCBT-----------------------TTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHCCcEEecCC-----------------------CCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 667777777 789887553 278999999999999999999999863
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.84 E-value=4.3e-20 Score=243.09 Aligned_cols=293 Identities=12% Similarity=0.070 Sum_probs=209.7
Q ss_pred HHHHHHHHHHHhCCCCCcEEEeCCHHHHH--HHHHHhhhhhhccC------------CCEEEEcCCCCcchHHHHHHHHh
Q psy15216 1439 IEKARNEVAQLIYADPREIIWTSGATESN--NLAIKGAAHFYKKR------------GKHIITVQTEHKSVLDSIRKLEN 1504 (2602)
Q Consensus 1439 ~~~lr~~ia~~~g~~~~~iv~t~gaT~al--~~al~~l~~~~~~~------------gd~Vlv~~~~~~s~~~~~~~~~~ 1504 (2602)
..++|+++++++++++++|++|+|+++++ .+++.++. ++ +|+|++++|+|+++...++..
T Consensus 78 ~~~lr~~ia~~~~~~~~~i~~t~G~~~al~l~~~~~~l~----~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~~~~-- 151 (422)
T 3d6k_A 78 IADIRELWAEALGLPADLVVAQDGSSLNIMFDLISWSYT----WGNNDSSRPWSAEEKVKWLCPVPGYDRHFTITEHF-- 151 (422)
T ss_dssp CHHHHHHHHHHHTCCGGGEEECSSCHHHHHHHHHHHHHH----HCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHH--
T ss_pred CHHHHHHHHHHhCCChhHEEEecchHHHHHHHHHHHHhc----CcccccccccccCCCCEEEEeCCccHHHHHHHHHc--
Confidence 56899999999999999999999999997 67777765 33 358999999999998777766
Q ss_pred CCcEEEEeccCCCCCcChhHHHhhccC-CceEEE-EeccccccccccChH---HHHHHhh-hcCCEEEEeccccc---Cc
Q psy15216 1505 DGFRVTYLKPKNNGLITLSQLEEKICS-DTILVS-VMLVNNEIGVIQPIL---EIGELCR-SKGVIFHCDAAQAV---GK 1575 (2602)
Q Consensus 1505 ~G~~v~~v~~~~~~~id~d~l~~~i~~-~t~lv~-l~~~~n~tG~~~~l~---~I~~ia~-~~gi~vivD~a~~~---g~ 1575 (2602)
|++++.++.++++ +|+++|++++++ ++++|+ +++++||||.++|.+ +|.++|+ +||+++|+|++|+. ..
T Consensus 152 -g~~~~~v~~~~~g-~d~~~l~~~l~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~ 229 (422)
T 3d6k_A 152 -GFEMINVPMTDEG-PDMGVVRELVKDPQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSD 229 (422)
T ss_dssp -TCEEEEEEEETTE-ECHHHHHHHHTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSS
T ss_pred -CCEEEecCCCCCC-CCHHHHHHHHhcCCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEECCccccccCC
Confidence 9999999987765 999999999986 789888 799999999999966 8888888 99999999999973 11
Q ss_pred c---cccC-------CCCCccEEEEccccccCCCc--eEEEEEecCCCCccccccccCCccccCCCCCcchhHHHHHHHH
Q psy15216 1576 I---DINI-------QNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEA 1643 (2602)
Q Consensus 1576 ~---~~~l-------~~~~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~a 1643 (2602)
. ..++ ...+.++++.|+||. +.+| +||+++++++++.+..... ....+.+...+.++..+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~-~~~GlriG~~~~~~~l~~~l~~~~~-------~~~~~~~~~~q~a~~~~ 301 (422)
T 3d6k_A 230 EFPIVHNVIEFAQAAGNPNRFWFMSSTSKI-THAGSGVSFFASSKENIEWYASHAN-------VRGIGPNKLNQLAHAQF 301 (422)
T ss_dssp CCCCCCCHHHHHHHTTCTTCEEEEEESTTT-SCTTSSCEEEECCHHHHHHHHHHHH-------HHCSCCCHHHHHHHHHH
T ss_pred CCCCCcChhhHhhccCCCCcEEEEcChhhh-cCcccceEEEEeCHHHHHHHHHHHH-------hhcCCCCHHHHHHHHHH
Confidence 0 1122 233567889999997 3345 8999998876665554321 11234555666666666
Q ss_pred HHH---HHHHHHHHHHHHHHHHHHHHHHHhhcC---CcEEEeCCCCCCCCceEEEEEecCCcHHHHHhc--CCEEEcc-c
Q psy15216 1644 FRL---ARIEMKEELKRILFLQKRLYNGLMESI---EEIYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDIAVSS-G 1714 (2602)
Q Consensus 1644 L~~---~~~~~~~~~~~~~~l~~~l~~~L~~~~---~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~v~~-g 1714 (2602)
|+. ....+++.++++++.++++.+.|.+.+ +++.+..+.. .....+.++..+...+...| +||.+++ |
T Consensus 302 l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~---g~~~~~~~~~~~~~~~~~~l~~~gV~v~~~g 378 (422)
T 3d6k_A 302 FGDVAGLKAHMLKHAASLAPKFERVLEILDSRLSEYGVAKWTSPTG---GYFISVDVVPGTASRVVELAKEAGIALTGAG 378 (422)
T ss_dssp HCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEECCCSB---SSCEEEEESTTCHHHHHHHHHHTTEECCCTT
T ss_pred HhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCceEEeCCCc---ceEEEEECCCCCHHHHHHHHHHCCeEEEcCc
Confidence 653 124466667777777777777775422 2356543322 22344445433344555555 8999998 4
Q ss_pred cccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1715 SACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
..|... . ....+++|||++. ++.+++++++++|++.
T Consensus 379 ~~f~~~------------~--~~~~~~iRis~~~-~~~e~i~~~~~~l~~~ 414 (422)
T 3d6k_A 379 SSFPLH------------N--DPNNENIRLAPSL-PPVAELEVAMDGFATC 414 (422)
T ss_dssp TTSGGG------------C--CTTSCEEEECCSS-SCHHHHHHHHHHHHHH
T ss_pred cccCCC------------C--CCCCCeEEEecCC-CCHHHHHHHHHHHHHH
Confidence 445311 0 0113789999997 8999999999999973
|
| >3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-20 Score=247.18 Aligned_cols=315 Identities=13% Similarity=0.082 Sum_probs=214.6
Q ss_pred CCCCCCCCCHHHHHHHHH-HHhhh--cCCCCCCCcchhhhHHHHHHHHHHHHHHHhCC------CCC--cEEEeCCHHHH
Q psy15216 2 DYSATTPIDPRVVDKMIP-YLRVQ--FGNPASRNHIYGWTAEKAIEKARNEVAQLIYA------DPR--EIIWTSGATES 70 (2602)
Q Consensus 2 d~a~~~~~p~~v~~a~~~-~l~~~--~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~------~~~--~Iv~t~g~T~a 70 (2602)
|+.+.+|.++.+.+++.+ .+... ..++. .....++|+.++++++. +++ +|++|+|+|+|
T Consensus 38 d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~----------~~g~~~lr~~la~~~~~~~~~~~~~~~~~i~~t~g~~~a 107 (397)
T 3fsl_A 38 NEDGIIPQLQAVAEAEARLNAQPHGASLYLP----------MEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGA 107 (397)
T ss_dssp CTTSCCCCCHHHHHHHHHHHHSCCCCCCCCC----------TTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHH
T ss_pred CCCCCccCcHHHHHHHHhhccCccccccCCC----------CCchHHHHHHHHHHHhcCCcccccccceEEEEcCCcHHH
Confidence 556667778999999998 77531 11211 11245678888888753 567 89999999999
Q ss_pred HHHHHHhcccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEecc--CCCCccChHHHHhhcc---CCceEEEEecc
Q psy15216 71 NNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP--KNNGLITLSQLEEKIC---SDTILVSVMLV 145 (2602)
Q Consensus 71 l~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~--~~~~~ld~e~l~~~i~---~~tklv~i~~~ 145 (2602)
+++++..+. .+++||+|+++.|.|+++...++.. |++++.++. ++++.+|+++++++++ ++++++++++|
T Consensus 108 ~~~~~~~~~--~~~~gd~vl~~~p~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p 182 (397)
T 3fsl_A 108 LKVGADFLK--RYFPESGVWVSDPTWENHVAIFAGA---GFEVSTYPWYDEATNGVRFNDLLATLKTLQAGSIVLLHPCC 182 (397)
T ss_dssp HHHHHHHHH--HHCTTCCEEEESSCCHHHHHHHHHT---TCCEEEECCEETTTTEECHHHHHHHHTTCCTTCEEEECSSS
T ss_pred HHHHHHHHH--hcCCCCeEEEeCCCchhHHHHHHHc---CCceEEEeeeeccCCcCcHHHHHHHHHhCCCCCEEEEeCCC
Confidence 999964322 1279999999999999987666554 999999998 4578899999999998 67899999999
Q ss_pred cCcccccccHH---HHHHHHHhcCCEEEEeccccccccc-----c---cC-CCCCccEEEeccccccCCCC--cEEEEEe
Q psy15216 146 NNEIGVIQPIL---EIGELCRSKGVIFHCDAAQAVGKID-----I---NI-QNYKVDLMSFSAHKIYGPKG--IGALYIR 211 (2602)
Q Consensus 146 ~npTG~~~~l~---~I~~la~~~g~~livD~a~a~g~~~-----~---dl-~~~~~D~~~~S~~K~~Gp~G--~G~l~~~ 211 (2602)
+||||.+++.+ +|+++|++||+++|+|++|+..... . .+ ...+..+++.|+||.+|++| +||+++.
T Consensus 183 ~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~riG~~~~~ 262 (397)
T 3fsl_A 183 HNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYGERVGGLSVM 262 (397)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTCGGGCCEEEEEE
T ss_pred CCCCCcCCCHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHhcCCCEEEEecccccccCcCCCeeEEEEe
Confidence 99999998755 8889999999999999998654321 1 11 12334688889999999888 7999864
Q ss_pred cC---CCCcccceecCCCccccccccCcchhHHHHHHHHHHH------HHHhHHHHHHHHHHHHHHHHHHHhhccC--ce
Q psy15216 212 RN---PRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRL------ARIEMKEELKRILFLQKRLYNGLMESIE--EI 280 (2602)
Q Consensus 212 ~~---~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~------~~~~~~~~~~~~~~l~~~l~~~L~~~~~--g~ 280 (2602)
.. .+..+...... ..+...++++.....++..++.. ...++++.+++++++++++.+.|.+..+ ++
T Consensus 263 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 339 (397)
T 3fsl_A 263 CEDAEAAGRVLGQLKA---TVRRNYSSPPNFGAQVVAAVLNDEALKASWLKEVEEMRTRILAMRQELVKVLSTEMPERNF 339 (397)
T ss_dssp CSSHHHHHHHHHHHHH---HHHTTTSSCCSHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCC
T ss_pred cCCHHHHHHHHHHHHH---HHHhccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 32 22222111000 00011234455555555455542 1345778889999999999999987322 44
Q ss_pred EEeCCCCCCCCceEEEEEcccChhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHH
Q psy15216 281 YINGDMNNRIPHNLNISFNFIEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKE 358 (2602)
Q Consensus 281 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~ed 358 (2602)
.+..+... .+.+...+...+...+ +||.+++| + ||+++..+ +++
T Consensus 340 ~~~~~~~~------~~~~~~~~~~~~~~~l~~~gi~v~~g-------------------------~--Ris~~~~~-~~~ 385 (397)
T 3fsl_A 340 DYLLNQRG------MFSYTGLSAAQVDRLREEFGVYLIAS-------------------------G--RMCVAGLN-TAN 385 (397)
T ss_dssp THHHHCCS------SEEECCCCHHHHHHHHHTTCEECCTT-------------------------C--EEEGGGCC-TTT
T ss_pred eeecCCce------EEEecCCCHHHHHHHHHhCCEEECCC-------------------------C--eEEEEecC-Hhh
Confidence 44322211 1233334444444444 68888633 2 99997554 477
Q ss_pred HHHHHHHHHh
Q psy15216 359 IDFTIKLLKM 368 (2602)
Q Consensus 359 id~li~~L~~ 368 (2602)
+++++++|++
T Consensus 386 i~~~~~~l~~ 395 (397)
T 3fsl_A 386 VQRVAKAFAA 395 (397)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999985
|
| >1q5l_A Chaperone protein DNAK; HSP70, chaperone, heat shock protein; NMR {Escherichia coli} SCOP: b.130.1.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=7.7e-21 Score=202.13 Aligned_cols=122 Identities=44% Similarity=0.680 Sum_probs=111.9
Q ss_pred CCceeeeccccccceEeeeccEEEEEEecCCCCCCCcEEEEEeccccccceeeeEeecCccccccCceeeeeEecCCCCC
Q psy15216 1005 DDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPM 1084 (2602)
Q Consensus 1005 ~~~~~~~dv~~~~~gi~~~~~~~~~ii~~~t~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~i~~~ 1084 (2602)
.+++.+.|++|++||+++.++.|.++|+||++||+++++.|+|..|||+.+.|.|||||+..+.+|..||+|.|+++||.
T Consensus 14 ~~d~~l~Dv~p~slGIe~~~g~~~~lI~rnt~iP~~k~~~f~t~~dnQ~~v~I~VyqGe~~~~~~n~~Lg~f~l~gipp~ 93 (135)
T 1q5l_A 14 PRGSHMVDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPA 93 (135)
T ss_dssp -------CCCSSCCCEEETTTEECCSSCSSSCSSBCCEEEECCCSSSCSSCEEEEEECCSSSCSSSEEEEEEECCCCCSC
T ss_pred eCcEEEEEeecCcEEEEEECCEEEEEEcCCCeEeEeEeEEEEeccCCceEEEEEEEEeCCcccccCcEEEEEEEeCCCCC
Confidence 34688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccEEEEEEEECCCeeEEEEEEEecCCceEEEEEecCCCC
Q psy15216 1085 PAGRARIKVTYQVDADGLLSIFAYEKISGKKKFITIKPFYNM 1126 (2602)
Q Consensus 1085 ~~g~~~i~v~f~~d~~g~l~v~a~~~~~g~~~~~~~~~~~~l 1126 (2602)
|+|.++|+|+|+||.||+|+|+|+++.||++..++|..+.+|
T Consensus 94 p~G~~~IeVtf~iD~nGiL~V~a~d~~tg~~~~i~i~~~~~l 135 (135)
T 1q5l_A 94 PRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGL 135 (135)
T ss_dssp CSSSCCEEEEEEECTTSEEEEEEEETTTCCEEEEEEECSCCC
T ss_pred CCceeEEEEEEEECCCCEEEEEEEECCCCCEEEEEEecCCCC
Confidence 999999999999999999999999999999999999987654
|
| >3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=4.2e-20 Score=239.86 Aligned_cols=298 Identities=13% Similarity=0.101 Sum_probs=205.9
Q ss_pred HHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHH-HHhCCcEEEEecc
Q psy15216 1436 EKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDGFRVTYLKP 1514 (2602)
Q Consensus 1436 ~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~-~~~~G~~v~~v~~ 1514 (2602)
.....++++++++++|.+ ++++++|+++|+..++.++. ++||+|+++.+.|+++...+.. +...|+++++++.
T Consensus 58 ~~~~~~l~~~la~~~g~~--~~i~~~sG~~ai~~~~~~~~----~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~ 131 (389)
T 3acz_A 58 NPTVEQFEEMVCSIEGAA--GSAAFGSGMGAISSSTLAFL----QKGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDLIDT 131 (389)
T ss_dssp CHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHTTTC----CTTCEEEEESSCCHHHHHHHHHHHHHTTCEEEEECT
T ss_pred ChHHHHHHHHHHHHhCCC--eEEEeCCHHHHHHHHHHHHh----CCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEECC
Confidence 346789999999999976 67777888999999998876 7999999999999998776644 4566999999986
Q ss_pred CCCCCcChhHHHhhccCCceEEEEeccccccccccChHHHHHHhhhcCCEEEEecccccCcccccCCCCCccEEEEcccc
Q psy15216 1515 KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK 1594 (2602)
Q Consensus 1515 ~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K 1594 (2602)
.|+++++++++++|++|++++|+||||.+.|+++|.++|++||+++|+|++|+.+.....+ .+++|+++.|+||
T Consensus 132 -----~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~livD~~~~~~~~~~~~-~~~~di~~~S~sK 205 (389)
T 3acz_A 132 -----SDVEKVKAAWKPNTKMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATFTSPCFLKPL-ELGADIALHSVSK 205 (389)
T ss_dssp -----TCHHHHHHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCTTTCCGG-GTTCSEEEEETTT
T ss_pred -----CCHHHHHHhcCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCccccccCcc-ccCCeEEEECChh
Confidence 3899999999999999999999999999999999999999999999999999876532222 2578999999999
Q ss_pred cc-CCCc--eEEEEEec-CCCCccccccccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15216 1595 IY-GPKG--IGALYIRR-NPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLM 1670 (2602)
Q Consensus 1595 ~~-gp~G--~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~ 1670 (2602)
++ |+.+ .|++++++ ++++.+.+....+ .++.+....+++..+++. +....++..+.++.+.+.|.
T Consensus 206 ~~~~~~~~~~G~v~~~~~~~~~~l~~~~~~~-------g~~~~~~~~~~~~~~l~~----l~~r~~~~~~~~~~l~~~l~ 274 (389)
T 3acz_A 206 YINGHGDVIGGVSSAKTAEDIATIKFYRKDA-------GSLMAPMDAFLCARGMKT----LPIRMQIHMENGLKVAKFLE 274 (389)
T ss_dssp TTTCSSCCCCEEEEESSHHHHHHHHHHHHHH-------CCCCCHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCCCceeEEEEECcHHHHHHHHHHHHhc-------CCCCCHHHHHHHHcCccH----HHHHHHHHHHHHHHHHHHHH
Confidence 55 4555 49999998 7666665433111 122333333333344432 23334455556666666666
Q ss_pred hcCCcEEEe-CCC--C-----------CCCCceEEEEEecCCcHHHHHhc--CCEEEcc---c------cccCCCC--CC
Q psy15216 1671 ESIEEIYIN-GDM--N-----------NRIPHNLNISFNFIEGESLLMAI--KDIAVSS---G------SACTSAS--LE 1723 (2602)
Q Consensus 1671 ~~~~gl~i~-~~~--~-----------~~~~~~~~~~~~~~~~~~~~~~L--~gI~v~~---g------~~~~~~~--~~ 1723 (2602)
+ .+.+.-. .+. . .....+..|.+++ .......+ .++.++. | .+|.... ..
T Consensus 275 ~-~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~~l~~--~~~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~ 351 (389)
T 3acz_A 275 Q-HEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMKS--FEAAKKLMEHLKVCTLAVSLGCVDTLIEHPASMTHAAV 351 (389)
T ss_dssp H-CTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESS--HHHHHHHHTTCSSSEEBSCCCCSSCEEECTTTTTTSSS
T ss_pred c-CCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEEEECC--HHHHHHHHHhCCCcEECcCCCCcccEeeCCcccccccC
Confidence 5 3433221 110 0 1123444555543 33333333 4665554 4 4453321 23
Q ss_pred hhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHH
Q psy15216 1724 PSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK 1763 (2602)
Q Consensus 1724 ~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~ 1763 (2602)
+......+|+++ ++||+|++.+++++.++.+.++|+
T Consensus 352 ~~~~~~~~g~~~----~~iRlsvg~~~~~~li~~l~~al~ 387 (389)
T 3acz_A 352 PENIMRKQGITP----ELVRISVGIENVDDIIADLKQALE 387 (389)
T ss_dssp CHHHHHHHTCCT----TEEEEECCSSCHHHHHHHHHHHHT
T ss_pred CHHHHHhcCCCc----CeEEEEeccCCHHHHHHHHHHHHh
Confidence 344556667653 899999999888888888877775
|
| >3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.3e-19 Score=235.54 Aligned_cols=299 Identities=14% Similarity=0.102 Sum_probs=209.7
Q ss_pred HHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHH-HHhCCcEEEEec
Q psy15216 1435 AEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDGFRVTYLK 1513 (2602)
Q Consensus 1435 ~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~-~~~~G~~v~~v~ 1513 (2602)
......++++++++++|. +++++++|+++|+..++.++. ++||+|+++++.|+++...+.. +...|+++++++
T Consensus 79 ~~p~~~~l~~~la~~~g~--~~~~~~~sG~~Ai~~al~~l~----~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~ 152 (414)
T 3ndn_A 79 GNPTVSVFEERLRLIEGA--PAAFATASGMAAVFTSLGALL----GAGDRLVAARSLFGSCFVVCSEILPRWGVQTVFVD 152 (414)
T ss_dssp CCHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHTTC----CTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEEC
T ss_pred CChHHHHHHHHHHHHHCC--CcEEEECCHHHHHHHHHHHHh----CCCCEEEEcCCccchHHHHHHHHHHHcCcEEEEeC
Confidence 345678999999999996 478999999999999999886 8999999999999998777654 345699999998
Q ss_pred cCCCCCcChhHHHhhccCCceEEEEeccccccccccChHHHHHHhhhcCCEEEEecccccCcccccCCCCCccEEEEccc
Q psy15216 1514 PKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAH 1593 (2602)
Q Consensus 1514 ~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~ 1593 (2602)
.+ |+++|+++++++|++|++++|+||||.+.|+++|.++|++||+++|+|++|+.+.....+ .+++|+++.|+|
T Consensus 153 ~~-----d~~~l~~ai~~~t~~v~le~p~NptG~~~~l~~i~~la~~~g~~livDe~~~~~~~~~~~-~~g~div~~S~s 226 (414)
T 3ndn_A 153 GD-----DLSQWERALSVPTQAVFFETPSNPMQSLVDIAAVTELAHAAGAKVVLDNVFATPLLQQGF-PLGVDVVVYSGT 226 (414)
T ss_dssp TT-----CHHHHHHHTSSCCSEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTHHHHCCCG-GGTCSEEEEETT
T ss_pred CC-----CHHHHHHhcCCCCeEEEEECCCCCCCccccHHHHHHHHHHcCCEEEEECCCcccccCCch-hcCCCeEeccCC
Confidence 75 899999999999999999999999999999999999999999999999999876543333 467899999999
Q ss_pred cccCCCc---eEEEEEecCCCC-ccccccccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15216 1594 KIYGPKG---IGALYIRRNPRT-RIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGL 1669 (2602)
Q Consensus 1594 K~~gp~G---~G~l~~~~~~~~-~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L 1669 (2602)
|++|+.| +|+++.+++.+. .+..... ...++.+....+.+...++ .+....++..+.++++.+.|
T Consensus 227 K~l~~~G~~~~G~vv~~~~~~~~~l~~~~~-------~~g~~~~~~~a~~~~~~l~----~l~~r~~~~~~~a~~l~~~L 295 (414)
T 3ndn_A 227 KHIDGQGRVLGGAILGDREYIDGPVQKLMR-------HTGPAMSAFNAWVLLKGLE----TLAIRVQHSNASAQRIAEFL 295 (414)
T ss_dssp TTTTCSSCCCCEEEEECHHHHTTHHHHHHH-------HHCCCCCHHHHHHHHHHGG----GHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCceEEEEEECHHHHHHHHHHHHH-------HcCCCCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 9888777 699999876554 3432211 0012222222222212222 24555667778888888888
Q ss_pred hhcCCcEEEeCCCC---C-----------CCCceEEEEEecC------CcHHHHHhc--CCEEEccccccCC--------
Q psy15216 1670 MESIEEIYINGDMN---N-----------RIPHNLNISFNFI------EGESLLMAI--KDIAVSSGSACTS-------- 1719 (2602)
Q Consensus 1670 ~~~~~gl~i~~~~~---~-----------~~~~~~~~~~~~~------~~~~~~~~L--~gI~v~~g~~~~~-------- 1719 (2602)
.+ .|++.....+. . ....+..|.+++. ....++..| .++.++.|..+..
T Consensus 296 ~~-~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~s~G~~~sl~~~p~~~~ 374 (414)
T 3ndn_A 296 NG-HPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPEDVAKQRAFEVLDKMRLIDISNNLGDAKSLVTHPATTT 374 (414)
T ss_dssp HT-CTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGGGHHHHHHHHHHHCSSSEECSCCSCSSCEEECGGGTT
T ss_pred hc-CCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCccccHHHHHHHHHhCccceEcCCCCCCCceeeCccccc
Confidence 77 67765332111 0 1233455555432 234566666 4677777765432
Q ss_pred CCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHH
Q psy15216 1720 ASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKL 1761 (2602)
Q Consensus 1720 ~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~ 1761 (2602)
....+.......|+.+ +.||||++....++.++.+-++
T Consensus 375 ~~~~~~~~~~~~g~~~----~~iRlsvG~e~~~dli~dl~~a 412 (414)
T 3ndn_A 375 HRAMGPEGRAAIGLGD----GVVRISVGLEDTDDLIADIDRA 412 (414)
T ss_dssp TCTTHHHHHHHTTCCT----TEEEEECCSSCHHHHHHHHHHH
T ss_pred cccCCHHHHHhcCCCC----CeEEEEeCcCCHHHHHHHHHHh
Confidence 1122333445567664 8999999975544444444333
|
| >2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ... | Back alignment and structure |
|---|
Probab=99.83 E-value=9.6e-21 Score=243.22 Aligned_cols=305 Identities=18% Similarity=0.183 Sum_probs=197.7
Q ss_pred EEEEEcCcccEEEEEEECCeEE-EEeCCCCCccccEE-EEEecCCcEEecHHHHhhhccCCCCchhhhhhhcCCCCCCCC
Q psy15216 2035 SIGIDFGTTNSLVAIVRNNIPE-VLKDKYGYFLIPSI-VRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNIN 2112 (2602)
Q Consensus 2035 vvGIDfGTt~s~va~~~~g~~~-ii~~~~g~~~~PS~-v~~~~~~~~~vG~~A~~~~~~~p~~~~~~~K~~lg~~~~~~~ 2112 (2602)
.|+||+||+++.+++..++.|. ++++--|....+++ +.+ .+...++|++|+... . ...+++-|.
T Consensus 7 ~ivID~Gs~~~k~G~~~~~~p~~~~ps~v~~~~~~~~~~~~-~~~~~~vG~~a~~~~----~--~~~~~~Pi~------- 72 (375)
T 2fxu_A 7 ALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGM-GQKDSYVGDEAQSKR----G--ILTLKYPIE------- 72 (375)
T ss_dssp CEEEEECSSEEEEEETTCSSCSEEEECCEEEECTTTC--------CCEEHHHHHHHT----T--SEEEECSEE-------
T ss_pred eEEEECCCCeEEEEECCCCCCceeeccccccccccccccCC-CCCCeEechhHhhcC----c--ccceecccc-------
Confidence 5899999999999987666554 34443333333221 111 123468999986641 1 011111111
Q ss_pred CCCCCeeeecCCCceEEEecCceeCHHHHHHHHHHHHHHHHHHhhcccc--ceEEEeeCCCCCHHHHHHHHHHH-HHcCC
Q psy15216 2113 TNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRI--FGAVITVPAYFNDIQRQFTKNAA-KLAGL 2189 (2602)
Q Consensus 2113 ~~~~~~~~~~~~g~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~--~~~ViTVPa~f~~~qr~~l~~Aa-~~AGl 2189 (2602)
.+...--+.+..+++++.. +.++... ..++||+|++++..+|+++.+++ +.+|+
T Consensus 73 --------------------~G~i~d~d~~e~i~~~~~~---~~L~~~~~~~~vvit~p~~~~~~~r~~~~e~~fe~~g~ 129 (375)
T 2fxu_A 73 --------------------HGIITNWDDMEKIWHHTFY---NELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNV 129 (375)
T ss_dssp --------------------TTEECCHHHHHHHHHHHHH---TTSCCCGGGSCEEEEECTTCCHHHHHHHHHHHHHTTCC
T ss_pred --------------------CCcccCHHHHHHHHHHHHH---HhcCCCCcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCc
Confidence 1111112233444444432 2344332 35999999999999999888765 88899
Q ss_pred ceeEeechhHHHHHHhhhccCCCCceEEEEEeCCceEEEEEEEEeCCEEEEEEEecCCCCchhHHHHHHHHHHHHHHhhh
Q psy15216 2190 NVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLK 2269 (2602)
Q Consensus 2190 ~~~~li~EP~AAAl~y~~~~~~~~~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~ 2269 (2602)
+.+.+++||+|||++++. .+.+|+|+||||||++.+ .+|. .+....+...+||+++|+.|.+++..+.+ .
T Consensus 130 ~~~~~~~e~~aaa~a~g~------~~~lVvDiG~gtt~v~~v--~~G~-~~~~~~~~~~~GG~~lt~~l~~~l~~~~~-~ 199 (375)
T 2fxu_A 130 PAMYVAIQAVLSLYASGR------TTGIVLDSGDGVTHNVPI--YEGY-ALPHAIMRLDLAGRDLTDYLMKILTERGY-S 199 (375)
T ss_dssp SEEEEEEHHHHHHHHTTC------SSEEEEEECSSCEEEEEE--ETTE-ECGGGCEEESCCHHHHHHHHHHHHHHHTC-C
T ss_pred ceEEEccchheeeeecCC------CeEEEEEcCCCceEEeEe--ECCE-EeccceEEeccCHHHHHHHHHHHHHhcCC-C
Confidence 999999999999999875 357999999999998765 4553 23333445799999999999999987511 1
Q ss_pred cCChhHHHHHHHHHHHHHHHhccc--------------ceEEEEEEecCCceEEEEcCHHHH---HHHHHHH-----HHH
Q psy15216 2270 KLSYKDVNILMIKSREIKELLSYQ--------------SSVKLNVKLSDKKIVNITIDMKQF---FTITQHL-----VNR 2327 (2602)
Q Consensus 2270 ~~~~~~~~~l~~~~e~~K~~ls~~--------------~~~~~~i~~~~~~~~~~~itr~~f---e~l~~~~-----~~~ 2327 (2602)
.... .-...+|++|+.+... ......+++.++. .+++++++| |.+++|. ...
T Consensus 200 -~~~~---~~~~~~e~iK~~~~~v~~~~~~e~~~~~~~~~~~~~~~lpdg~--~i~i~~erf~~~E~lf~p~~~~~~~~~ 273 (375)
T 2fxu_A 200 -FVTT---AEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQ--VITIGNERFRCPETLFQPSFIGMESAG 273 (375)
T ss_dssp -CCSH---HHHHHHHHHHHHHCCCCSSHHHHHHHHHHCSTTCEEEECTTSC--EEEESTHHHHHHHTTTCGGGGTCCSCC
T ss_pred -CCcH---HHHHHHHHHHHHHHhhcccHHHHHHhhcccCccCeEEECCCCC--EEEEChhheechHhhCCCccCCCCCCC
Confidence 1100 0123445555554221 0112234455554 467888877 4455553 355
Q ss_pred HHHHHHHHHHHcCC--CccccceEEEEeCccchHHHHHHHHhhcC--------CcccCCCCccchhhhHHHHHhH
Q psy15216 2328 TILLSSKALMDANL--TIKDINNVILVGGSTRMKHIHEGVSNFFK--------TTLLTSIDPDKAVVFGAAIQAN 2392 (2602)
Q Consensus 2328 ~~~~i~~~l~~~~~--~~~~i~~V~LvGG~s~~p~v~~~l~~~f~--------~~~~~~~~p~~aVa~GAa~~a~ 2392 (2602)
+.++|.+.|+.+.. ....++.|+|+||+|++|.++++|++.++ .++..+.+|..++++||+++|.
T Consensus 274 i~~~i~~~i~~~~~~~~~~l~~~IvLtGG~s~~pG~~~rl~~el~~~~p~~~~v~v~~~~~p~~~~w~G~si~a~ 348 (375)
T 2fxu_A 274 IHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILAS 348 (375)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHTCEEEESGGGCSTTHHHHHHHHHHHHSCTTCCCCEECCTTTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHhCcEeeCCCCCCccHHHHHHHHHHHhCCCCeeEEEEcCCCCCccEEcchHHhhC
Confidence 77888888886632 23346889999999999999999998774 3455678999999999999996
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=8.5e-20 Score=243.85 Aligned_cols=319 Identities=14% Similarity=0.102 Sum_probs=218.7
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHh-----CC--CCCcEEEeCCHHHHHHHHHHhhhh
Q psy15216 1404 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI-----YA--DPREIIWTSGATESNNLAIKGAAH 1476 (2602)
Q Consensus 1404 ~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~-----g~--~~~~iv~t~gaT~al~~al~~l~~ 1476 (2602)
..|..+.++..+.+....+. ..+.|.. .....++|+++++++ |. ++++|++|+|+++|+.+++.++.
T Consensus 101 ~~P~~~~~~~~~~l~~~~~~-~~~~Y~~----~~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l~- 174 (498)
T 3ihj_A 101 SFPEDAKKRARRILQACGGN-SLGSYSA----SQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILV- 174 (498)
T ss_dssp SSCHHHHHHHHHHHHHC---------------CCSCHHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHhccCC-CCCCCCC----CCCHHHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHHc-
Confidence 34667777777777653210 0111111 122345566666555 34 67899999999999999999887
Q ss_pred hhccCCC----EEEEcCCCCcchHHHHHHHHhCCcEEEEeccCC--CCCcChhHHHhhccC-----CceEEEEecccccc
Q psy15216 1477 FYKKRGK----HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICS-----DTILVSVMLVNNEI 1545 (2602)
Q Consensus 1477 ~~~~~gd----~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~id~d~l~~~i~~-----~t~lv~l~~~~n~t 1545 (2602)
++|| +|+++.|.|+++...+... |++++.++.++ ++.+|+++|++++++ ++++|++++|+|||
T Consensus 175 ---~~gd~~~d~Vlv~~p~y~~~~~~~~~~---g~~~v~~~~~~~~~~~~d~~~le~~l~~~~~~~~~k~i~l~np~NPT 248 (498)
T 3ihj_A 175 ---SGGGKSRTGVMIPIPQYPLYSAVISEL---DAIQVNYYLDEENCWALNVNELRRAVQEAKDHCDPKVLCIINPGNPT 248 (498)
T ss_dssp ---CCCGGGSEEEEEEESCCTHHHHHHHHT---TCEEEEEECBGGGTTBCCHHHHHHHHHHHTTTSEEEEEEEESSCTTT
T ss_pred ---CCCCCCCCEEEEeCCCchhHHHHHHHc---CCEEEEeeccccccCCCCHHHHHHHHHhhhccCCCeEEEEECCCCCC
Confidence 6764 9999999999988777665 99999998875 467999999999986 68999999999999
Q ss_pred ccccC---hHHHHHHhhhcCCEEEEecccccCccc-----ccCCC----C------Cc-cEEEEcccccc-CCCc--eEE
Q psy15216 1546 GVIQP---ILEIGELCRSKGVIFHCDAAQAVGKID-----INIQN----Y------KV-DLMSFSAHKIY-GPKG--IGA 1603 (2602)
Q Consensus 1546 G~~~~---l~~I~~ia~~~gi~vivD~a~~~g~~~-----~~l~~----~------~~-D~~v~S~~K~~-gp~G--~G~ 1603 (2602)
|.+++ +++|+++|++||+++|+|++|+..... .++.. + .. .+++.|+||.+ |++| +||
T Consensus 249 G~v~s~~~l~~i~~la~~~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~ 328 (498)
T 3ihj_A 249 GQVQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGY 328 (498)
T ss_dssp CCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCCEE
T ss_pred CCcCCHHHHHHHHHHHHHcCcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcccceEE
Confidence 99998 667999999999999999998753321 11111 1 11 25677999966 6666 799
Q ss_pred EEE---ecCCCCccccccccCCccccCCCCCcchhHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15216 1604 LYI---RRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFR----------LARIEMKEELKRILFLQKRLYNGLM 1670 (2602)
Q Consensus 1604 l~~---~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~----------~~~~~~~~~~~~~~~l~~~l~~~L~ 1670 (2602)
+++ ++++++.+.... . ...+++.+.+.++..++. ........+++++.++++++++.|.
T Consensus 329 ~~~~~~~~~l~~~l~~~~-------~-~~~~~~~~~q~a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~ 400 (498)
T 3ihj_A 329 MEVINLHPEIKGQLVKLL-------S-VRLCPPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFN 400 (498)
T ss_dssp EEEESCCHHHHHHHHHHH-------H-HSCCCCHHHHHHHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCHHHHHHHHHHH-------h-ccCCCCHHHHHHHHHHhcCCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 985 555554443321 1 123556666667766663 1122356777888999999999998
Q ss_pred hcCCcEEEeCCCCCCCCceEEEEE--e----------cCCcHHH--HHhc--CCEEEccccccCCCCCChhHHHHHcCCC
Q psy15216 1671 ESIEEIYINGDMNNRIPHNLNISF--N----------FIEGESL--LMAI--KDIAVSSGSACTSASLEPSYVLRALGCN 1734 (2602)
Q Consensus 1671 ~~~~gl~i~~~~~~~~~~~~~~~~--~----------~~~~~~~--~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~ 1734 (2602)
+ ++++.+..+.... ...+.+ + +.+.+.+ ...| +||.+.+|..|...
T Consensus 401 ~-~~g~~~~~p~gg~---~~~~~l~~p~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pG~~f~~~-------------- 462 (498)
T 3ihj_A 401 Q-VPGIHCNPLQGAM---YAFPRIFIPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQR-------------- 462 (498)
T ss_dssp T-STTEECCCCCBSS---EECCEECCCHHHHHHHHHTTSCHHHHHHHHHHHHHCBCCEEGGGTCCC--------------
T ss_pred c-CCCcEecCCCeEE---EEEEeccCchhhhHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCC--------------
Confidence 8 7898876443221 111112 1 1123332 2333 69999999988642
Q ss_pred ccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1735 DELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1735 ~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
...+++|+++. .+.++++.++++|++
T Consensus 463 --~~~~~~Ris~~--~~~e~l~~~i~~L~~ 488 (498)
T 3ihj_A 463 --EGTYHFRMTIL--PPVEKLKTVLQKVKD 488 (498)
T ss_dssp --TTCCBEEEECC--SCHHHHHHHHHHHHH
T ss_pred --CCCCEEEEEeC--CCHHHHHHHHHHHHH
Confidence 11368999995 689999999999987
|
| >1xjs_A NIFU-like protein; SR17, structure, autostructure, iron-sulfur, zinc, northeast structural genomics consortium, NESG; NMR {Bacillus subtilis} SCOP: d.224.1.2 PDB: 2azh_A | Back alignment and structure |
|---|
Probab=99.83 E-value=2e-21 Score=207.94 Aligned_cols=88 Identities=35% Similarity=0.707 Sum_probs=83.8
Q ss_pred hhhhhhhhhhhhhcCCCCcCcccCCCCcceeeeecCCCCccEEEEEEEEcCCCcEEeeeeeccccchhHhhHHHHHHHHc
Q psy15216 1767 FFMSYSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKTYGCGSAIASSSLVTEWVK 1846 (2602)
Q Consensus 1767 ~~~~y~~~i~dh~~~p~~~g~~~~~~~~~~~~~~~~~~cgd~~~~~~~~~~~~~i~~~~~~~~gc~~~~a~~s~~~~~~~ 1846 (2602)
++++|+++|+|||+||||+|.+ +++ ++++++||+|||.|+|||+|+ +|+|+|++|+++||+++||||||+||+++
T Consensus 7 l~~lY~~~Ildh~~nP~n~G~l-~~~---~~~~~~np~CGD~i~l~lkv~-~~~I~d~~f~~~GCais~ASaS~mte~v~ 81 (147)
T 1xjs_A 7 LDTLYRQVIMDHYKNPRNKGVL-NDS---IVVDMNNPTCGDRIRLTMKLD-GDIVEDAKFEGEGCSISMASASMMTQAIK 81 (147)
T ss_dssp THHHHHHHHHHHHHSCCCCCCC-CSS---EEEEEEETTTTEEEEEEEECC-SSBCCEEEEEEESSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCCCCCC-CCC---eEEeecCCCCCCEEEEEEEEC-CCeEEEEEEEecCCHHHHHHHHHHHHHHc
Confidence 5778999999999999999999 877 899999999999999999995 78999999999999999999999999999
Q ss_pred CCChhhhhccccc
Q psy15216 1847 GKTLDEAMSIKNT 1859 (2602)
Q Consensus 1847 g~~~~~~~~i~~~ 1859 (2602)
|||++||..+++.
T Consensus 82 Gkt~~Ea~~i~~~ 94 (147)
T 1xjs_A 82 GKDIETALSMSKI 94 (147)
T ss_dssp TSBHHHHHHHHHH
T ss_pred CCcHHHHHHHHHH
Confidence 9999999999875
|
| >1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.8e-20 Score=240.24 Aligned_cols=318 Identities=16% Similarity=0.159 Sum_probs=204.5
Q ss_pred eceeeeccCCC-CCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHH
Q psy15216 1392 PYTNIVFKDAT-TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLA 1470 (2602)
Q Consensus 1392 P~~~v~L~~~~-~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~a 1470 (2602)
|...++++.+. ..+++.+.+++.+.... .. .|. ......++|+++++++|.+ ++++++|+|+|+.++
T Consensus 2 ~~~~i~~~~~~~~~p~~~~~~a~~~~~~~-----~~-~y~----~~~~~~~l~~~la~~~g~~--~~~~~~~gt~a~~~~ 69 (347)
T 1jg8_A 2 PHMMIDLRSDTVTKPTEEMRKAMAQAEVG-----DD-VYG----EDPTINELERLAAETFGKE--AALFVPSGTMGNQVS 69 (347)
T ss_dssp ---CEECSCGGGCCCCHHHHHHHHTCCCC-----CG-GGT----CCHHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHH
T ss_pred CceEEEeccccCCCCCHHHHHHHhcCCCC-----Cc-ccC----CChHHHHHHHHHHHHhCCc--eEEEecCcHHHHHHH
Confidence 33445665433 34556677777543211 00 111 1224678999999999974 688899999999998
Q ss_pred HHhhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccC------CceEEEEeccccc
Q psy15216 1471 IKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICS------DTILVSVMLVNNE 1544 (2602)
Q Consensus 1471 l~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~------~t~lv~l~~~~n~ 1544 (2602)
+.++. ++||+|++++++|++.......+...|++++.+ .++++.+|+++|++++++ +|++|++++|+||
T Consensus 70 ~~~~~----~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v-~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~np 144 (347)
T 1jg8_A 70 IMAHT----QRGDEVILEADSHIFWYEVGAMAVLSGVMPHPV-PGKNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNR 144 (347)
T ss_dssp HHHHC----CTTCEEEEETTCHHHHSSTTHHHHHTCCEEEEE-CEETTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTT
T ss_pred HHHhc----CCCCEEEEcCcchhhhccccchhhccCeEEEEe-cCCCCccCHHHHHHHhccccccccCceEEEEeccccc
Confidence 88876 899999999999977443222233458999988 555677899999999985 6899999999999
Q ss_pred c-ccccCh---HHHHHHhhhcCCEEEEecccccCc---ccccCCC--CCccEEEEccccccCCCceE-EEEEecCCCCcc
Q psy15216 1545 I-GVIQPI---LEIGELCRSKGVIFHCDAAQAVGK---IDINIQN--YKVDLMSFSAHKIYGPKGIG-ALYIRRNPRTRI 1614 (2602)
Q Consensus 1545 t-G~~~~l---~~I~~ia~~~gi~vivD~a~~~g~---~~~~l~~--~~~D~~v~S~~K~~gp~G~G-~l~~~~~~~~~l 1614 (2602)
| |.++|. ++|.++|++||+++++|++|.++. ...+... .+.|.+++|+||.+|++ +| +++.++++++.+
T Consensus 145 t~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~~-~G~~~~~~~~~~~~~ 223 (347)
T 1jg8_A 145 SGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAP-VGSVVVGDRDFIERA 223 (347)
T ss_dssp TTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTCSEEEEESSSTTCCS-SCEEEEECHHHHHHH
T ss_pred cCCccCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCCChHHhcccccEEEEecccccCCC-ceEEEEcCHHHHHHH
Confidence 9 999884 688899999999999999985532 1112111 24688888999966643 44 566666555554
Q ss_pred ccccccCCccccCCCCCc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEE
Q psy15216 1615 EAQIHGGGHEYGLRSGTL--ATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNI 1692 (2602)
Q Consensus 1615 ~~~~~g~~~~~~~~~gt~--~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~ 1692 (2602)
......+ .++. +....++...+++.. .+. .++..++++++.+.|.+ . ++.+..++. ...+..+
T Consensus 224 ~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~---~~~-~~~~~~~~~~l~~~L~~-~-~~~~~~~~~--~~~~~~~ 288 (347)
T 1jg8_A 224 RKARKML-------GGGMRQAGVLAAAGIIALTKM---VDR-LKEDHENARFLALKLKE-I-GYSVNPEDV--KTNMVIL 288 (347)
T ss_dssp HHHHHHH-------TCCCSSTHHHHHHHHHHHHHS---STT-HHHHHHHHHHHHHHHHH-H-TCBCCGGGC--CSSEEEE
T ss_pred HHHHHHc-------CCchhHHHHHHHHHHHHHHHH---HHH-HHHHHHHHHHHHHHHHh-c-CceeccCCC--cceEEEE
Confidence 3321100 0111 111112222333321 111 22334566777888876 3 554321111 1233444
Q ss_pred EEe--cCCcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1693 SFN--FIEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1693 ~~~--~~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
.++ ..+..++...| +||.++++. .+++|++++.++|.+|+++++++|++.
T Consensus 289 ~~~~~~~~~~~~~~~l~~~gi~v~~~~-----------------------~~~iRl~~~~~~~~e~i~~~~~~l~~~ 342 (347)
T 1jg8_A 289 RTDNLKVNAHGFIEALRNSGVLANAVS-----------------------DTEIRLVTHKDVSRNDIEEALNIFEKL 342 (347)
T ss_dssp ECTTSSSCHHHHHHHHHHHTEECEEEE-----------------------TTEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred EcccccCCHHHHHHHHHHCCCEEecCC-----------------------CCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 444 23456676666 689887532 168999999999999999999999873
|
| >1su0_B NIFU like protein ISCU; structural genomics, BSGC structure funded by NI protein structure initiative, PSI; 2.30A {Streptococcus pyogenes} SCOP: d.224.1.2 | Back alignment and structure |
|---|
Probab=99.83 E-value=3.5e-21 Score=208.17 Aligned_cols=88 Identities=32% Similarity=0.534 Sum_probs=83.5
Q ss_pred hhhhhhhhhhhhhcCCCCcCcccCCCCcceeeeecCCCCccEEEEEEEEcCCCcEEeeeeeccccchhHhhHHHHHHHHc
Q psy15216 1767 FFMSYSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKTYGCGSAIASSSLVTEWVK 1846 (2602)
Q Consensus 1767 ~~~~y~~~i~dh~~~p~~~g~~~~~~~~~~~~~~~~~~cgd~~~~~~~~~~~~~i~~~~~~~~gc~~~~a~~s~~~~~~~ 1846 (2602)
++.+|+++|+|||+||||+|.+ +++ ++++++||+|||.|+|||+|+ +|+|+|++|+++||+++||||||+||+++
T Consensus 6 l~~lY~~~Ildh~~nP~n~G~l-~~~---~~~~~~np~CGD~i~l~lkv~-~g~I~d~~F~~~GCais~ASaS~mte~v~ 80 (159)
T 1su0_B 6 LNHLYMAVVADHSKRPHHHGQL-DGV---EAVQLNNPTCGDVISLTVKFD-EDKIEDIAFAGNGCTISTASSSMMTDAVI 80 (159)
T ss_dssp CCHHHHHHHHHHHHSCSSBSCC-TTC---CCEEEECSSSCCEEEEEEEES-SSSEEEEEEEEECCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCCCCCC-CCC---eEEeecCCCCCCEEEEEEEEC-CCEEEEEEEEecCCHHHHHHHHHHHHHHc
Confidence 5778999999999999999999 877 789999999999999999995 78999999999999999999999999999
Q ss_pred CCChhhhhccccc
Q psy15216 1847 GKTLDEAMSIKNT 1859 (2602)
Q Consensus 1847 g~~~~~~~~i~~~ 1859 (2602)
|||++||..+++.
T Consensus 81 Gkt~~Ea~~i~~~ 93 (159)
T 1su0_B 81 GKSKEEALALADI 93 (159)
T ss_dssp TCCHHHHHHHHHH
T ss_pred CCcHHHHHHHHHH
Confidence 9999999999864
|
| >1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.83 E-value=2.2e-20 Score=245.85 Aligned_cols=299 Identities=17% Similarity=0.164 Sum_probs=196.6
Q ss_pred HHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHHH-HhCCcEEEEeccCC
Q psy15216 1438 AIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDGFRVTYLKPKN 1516 (2602)
Q Consensus 1438 ~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~-~~~G~~v~~v~~~~ 1516 (2602)
..+++++++++++|.+ ++++++|+++|++.++. +. ++||+|+++++.|+++...+..+ ...|++++.++.+
T Consensus 134 ~~~~l~~~la~~~g~~--~~i~~~sGt~al~~~l~-~~----~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~- 205 (464)
T 1ibj_A 134 TRDALESLLAKLDKAD--RAFCFTSGMAALSAVTH-LI----KNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTT- 205 (464)
T ss_dssp HHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHT-TS----CTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECTT-
T ss_pred HHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHH-Hh----CCCCEEEEECCCchhHHHHHHHHHHHcCCEEEEeCCC-
Confidence 5788999999999965 77888888999987764 43 79999999999999987765433 4559999999864
Q ss_pred CCCcChhHHHhhccCCceEEEEeccccccccccChHHHHHHhhhcCCEEEEecccccCcccccCCCCCccEEEEcccc-c
Q psy15216 1517 NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-I 1595 (2602)
Q Consensus 1517 ~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K-~ 1595 (2602)
|+++|+++++++|++|++++|+||||.++|+++|.++|++||+++|+|++|+.|.....+. +++|++++|+|| +
T Consensus 206 ----d~~~l~~~i~~~tk~v~l~~p~NptG~v~~l~~i~~la~~~gi~livDea~~~g~~~~~~~-~~~div~~S~sK~~ 280 (464)
T 1ibj_A 206 ----KLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVLSRPLE-LGADIVMHSATKFI 280 (464)
T ss_dssp ----SHHHHHHHCCSSEEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEECTTTCTTTCCGGG-TTCSEEEEETTTTT
T ss_pred ----CHHHHHHHhccCceEEEEeCCCCCCCEeecHHHHHHHHHHcCCEEEEECCCcccccCChhh-cCCEEEEECCcccc
Confidence 8999999999999999999999999999999999999999999999999998876422222 578999999999 4
Q ss_pred cCCCce--EEEEEec-CCCCccccccccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q psy15216 1596 YGPKGI--GALYIRR-NPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYN----- 1667 (2602)
Q Consensus 1596 ~gp~G~--G~l~~~~-~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~----- 1667 (2602)
.|+.|+ |++++++ ++.+.+.+... ...++.+....+++..+++.....++........+.+++.+
T Consensus 281 ~g~~Gl~~G~l~~~~~~l~~~l~~~~~-------~~g~~~~~~~~~a~~~al~~~~~r~~~~~~~~~~l~~~l~~~~~v~ 353 (464)
T 1ibj_A 281 AGHSDVMAGVLAVKGEKLAKEVYFLQN-------SEGSGLAPFDCWLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVK 353 (464)
T ss_dssp TCSSCCCCEEEEECSHHHHHHHHHHHH-------HTTCBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTCC
T ss_pred cCCCCCcEEEEEEChHHHHHHHHHHHH-------hcCCCCCHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHhCCCce
Confidence 567675 9999985 55555543321 11123344444444455542222233333333333333332
Q ss_pred -----HHhhcCCcEEEeCCCCCCCCceEEEEEecCC-cHHHHHhc--CCEEEcccc----ccCCCC----CChhHHHHHc
Q psy15216 1668 -----GLMESIEEIYINGDMNNRIPHNLNISFNFIE-GESLLMAI--KDIAVSSGS----ACTSAS----LEPSYVLRAL 1731 (2602)
Q Consensus 1668 -----~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~L--~gI~v~~g~----~~~~~~----~~~~~~~~~~ 1731 (2602)
.|.+ .|++.+..+.......+..|.+.+.+ ...+...| .+|.++.|. .|.+.. ..+......+
T Consensus 354 ~~~~~~L~~-~p~~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~L~~~gi~v~~G~~~sl~~~p~~~~~~~~~~~~~~~~ 432 (464)
T 1ibj_A 354 KVYYAGLPD-HPGHHLHFSQAKGAGSVFSFITGSVALSKHLVETTKYFSIAVSFGSVKSLISMPCFMSHASIPAEVREAR 432 (464)
T ss_dssp EEECTTSTT-STTHHHHTTTCSCCCSEEEEECSCHHHHHHHHHHCSSSEECSCCCSSSCEEECTTTTTTCSCCSSSSSSS
T ss_pred EEECCCCCC-CcchHHHhccCCCCceEEEEEECCHHHHHHHHHhcCcceEeecCCCCceeeecccccccccCCHHHHHhc
Confidence 2222 23444333222112334444443211 23466665 688888876 222210 0000001112
Q ss_pred CCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1732 GCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1732 ~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
|.. .++||+|++. ||++++++.|++.
T Consensus 433 g~~----~~~iRlsvg~----edi~~li~~L~~a 458 (464)
T 1ibj_A 433 GLT----EDLVRISAGI----EDVDDLISDLDIA 458 (464)
T ss_dssp SCC----TTCEEEECCS----SCHHHHHHHHHHH
T ss_pred CCC----cCeEEEEeCC----CCHHHHHHHHHHH
Confidence 222 3789999995 8899999999863
|
| >1xjs_A NIFU-like protein; SR17, structure, autostructure, iron-sulfur, zinc, northeast structural genomics consortium, NESG; NMR {Bacillus subtilis} SCOP: d.224.1.2 PDB: 2azh_A | Back alignment and structure |
|---|
Probab=99.83 E-value=2.8e-21 Score=206.72 Aligned_cols=88 Identities=35% Similarity=0.707 Sum_probs=83.7
Q ss_pred hhhhhhHhhhhcccCCCCCCCCCCCCCcceeeeeCCCCcccEEEEEEEEcCCCceEeeeeeccccchhHhhHHHHHHHHc
Q psy15216 371 FFMSYSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKTYGCGSAIASSSLVTEWVK 450 (2602)
Q Consensus 371 ~~~~y~~~~~~hy~~p~n~g~~~~~~~~~~~~~~~~~~cgd~~~~~~~~~~~~~i~~~~~~~~gc~~~~a~~s~~~~~~~ 450 (2602)
++++|+++++|||+||||+|.+ +++ ++++.+||+|||.|+|+|+|+ +|+|+|++|+|+||+++|||||++||+++
T Consensus 7 l~~lY~~~Ildh~~nP~n~G~l-~~~---~~~~~~np~CGD~i~l~lkv~-~~~I~d~~f~~~GCais~ASaS~mte~v~ 81 (147)
T 1xjs_A 7 LDTLYRQVIMDHYKNPRNKGVL-NDS---IVVDMNNPTCGDRIRLTMKLD-GDIVEDAKFEGEGCSISMASASMMTQAIK 81 (147)
T ss_dssp THHHHHHHHHHHHHSCCCCCCC-CSS---EEEEEEETTTTEEEEEEEECC-SSBCCEEEEEEESSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCCCCCC-CCC---eEEeecCCCCCCEEEEEEEEC-CCeEEEEEEEecCCHHHHHHHHHHHHHHc
Confidence 5789999999999999999999 877 788999999999999999995 78999999999999999999999999999
Q ss_pred CCChhhhhhcccc
Q psy15216 451 GKTLDEAMSIKNT 463 (2602)
Q Consensus 451 g~~~~e~~~i~~~ 463 (2602)
|||++||..+++.
T Consensus 82 Gkt~~Ea~~i~~~ 94 (147)
T 1xjs_A 82 GKDIETALSMSKI 94 (147)
T ss_dssp TSBHHHHHHHHHH
T ss_pred CCcHHHHHHHHHH
Confidence 9999999999864
|
| >7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=4.5e-20 Score=241.53 Aligned_cols=316 Identities=12% Similarity=0.059 Sum_probs=208.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCC------CCCcEEE--eCCHHHHHH
Q psy15216 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA------DPREIIW--TSGATESNN 72 (2602)
Q Consensus 1 Ld~a~~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~------~~~~Iv~--t~g~T~al~ 72 (2602)
+|+.+.++..+.+.+++.+.+.. ..++.. ... ....++|++++++++. ++++|++ |+|+|+|++
T Consensus 39 ~d~~~~~~~~~~v~~a~~~~~~~-~~~~~Y---~~~----~g~~~lr~~ia~~~~~~~~~~~~~~~i~~v~t~G~~~al~ 110 (401)
T 7aat_A 39 RDDNGKPYVLNCVRKAEAMIAAK-KMDKEY---LPI----AGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLR 110 (401)
T ss_dssp CCTTSCCCCCHHHHHHHHHHHHT-TCCCCC---CCT----TCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHH
T ss_pred ECCCCCEechHHHHHHHHHhccc-ccccCC---CCC----CCCHHHHHHHHHHhcCCCccccccCceEEEecCcchHHHH
Confidence 36666667777888888877652 112211 110 1245678888887754 3789977 999999999
Q ss_pred HHHHhcccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccC--CCCccChHHHHhhcc---CCceEEEEecccC
Q psy15216 73 LAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK--NNGLITLSQLEEKIC---SDTILVSVMLVNN 147 (2602)
Q Consensus 73 ~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~--~~~~ld~e~l~~~i~---~~tklv~i~~~~n 147 (2602)
+++.++. ...++||+|++++|.|+++...++.. |++++.++.+ .++.+|++++++.+. ++++++++++|||
T Consensus 111 ~~~~~l~-~~~~~gd~Vlv~~p~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~N 186 (401)
T 7aat_A 111 VGANFLQ-RFFKFSRDVYLPKPSWGNHTPIFRDA---GLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHACAHN 186 (401)
T ss_dssp HHHHHHH-HHCTTCCEEEEEESCCTTHHHHHHHT---TCEEEEEECEETTTTEECHHHHHHHHTTSCTTCEEEEESSSCT
T ss_pred HHHHHHH-HhccCCCEEEEcCCCchhHHHHHHHc---CCeeEeeeeeccccCccCHHHHHHHHHhCCCCcEEEEeCCCCC
Confidence 9887764 12378999999999999987777655 9999999874 367899996666654 6789999999999
Q ss_pred ccccccc---HHHHHHHHHhcCCEEEEecccccccc-cc-----cC----CCCCccEEEeccccccCCCC--cEEEEEec
Q psy15216 148 EIGVIQP---ILEIGELCRSKGVIFHCDAAQAVGKI-DI-----NI----QNYKVDLMSFSAHKIYGPKG--IGALYIRR 212 (2602)
Q Consensus 148 pTG~~~~---l~~I~~la~~~g~~livD~a~a~g~~-~~-----dl----~~~~~D~~~~S~~K~~Gp~G--~G~l~~~~ 212 (2602)
|||.+++ +++|+++|++||+++|+|++|..... +. .+ ......+++.|+||.+|++| +||+++..
T Consensus 187 PtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~RiG~l~~~~ 266 (401)
T 7aat_A 187 PTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMGLYGERAGAFTVIC 266 (401)
T ss_dssp TTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEEEC
T ss_pred CCCCCCCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHHhcCCcEEEEecCCcccccccCceEEEEEEe
Confidence 9998887 66788899999999999999764321 11 01 12234688899999999988 89998732
Q ss_pred ---CC----CCcccceecCCCccccccccCcchhHHHHHHHHHHH--H----HHhHHHHHHHHHHHHHHHHHHHhhcc--
Q psy15216 213 ---NP----RTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRL--A----RIEMKEELKRILFLQKRLYNGLMESI-- 277 (2602)
Q Consensus 213 ---~~----~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~--~----~~~~~~~~~~~~~l~~~l~~~L~~~~-- 277 (2602)
+. ...+.... .....+++.....++..+++. . ...+++.+++++++++++.+.|.+..
T Consensus 267 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~ 339 (401)
T 7aat_A 267 RDAEEAKRVESQLKILI-------RPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSS 339 (401)
T ss_dssp SSHHHHHHHHHHHHHHH-------HHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHHHH-------HhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 21 11111111 001122333333333334431 1 33467778889999999999997721
Q ss_pred CceEEeCCCCCCCCceEEEEEcccChhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCC
Q psy15216 278 EEIYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTT 355 (2602)
Q Consensus 278 ~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t 355 (2602)
+++....+.. ..+.+...+.+.+...+ +||.+. ..+|+|++.+++
T Consensus 340 ~~~~~~~~~~------~~~~~~~~~~~~~~~ll~~~gi~v~---------------------------~~~Ris~~~~~~ 386 (401)
T 7aat_A 340 HNWQHITDQI------GMFCFTGLKPEQVERLTKEFSIYMT---------------------------KDGRISVAGVAS 386 (401)
T ss_dssp SCCHHHHHCC------SSEEECCCCHHHHHHHHHHHCEECC---------------------------TTCEEEGGGCCT
T ss_pred CCCceecCCc------ceEEecCCCHHHHHHHHHhCCEecc---------------------------CCCeEEeccCCh
Confidence 1233332211 12333444444433222 577764 237999987666
Q ss_pred HHHHHHHHHHHHhh
Q psy15216 356 EKEIDFTIKLLKMK 369 (2602)
Q Consensus 356 ~edid~li~~L~~~ 369 (2602)
++ |++++++|++.
T Consensus 387 ~~-i~~~~~~l~~~ 399 (401)
T 7aat_A 387 SN-VGYLAHAIHQV 399 (401)
T ss_dssp TT-HHHHHHHHHHH
T ss_pred hh-HHHHHHHHHHH
Confidence 55 99999999863
|
| >2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.83 E-value=2.4e-19 Score=234.98 Aligned_cols=303 Identities=14% Similarity=0.103 Sum_probs=202.6
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHH-HHhCCcEEEEe-cc
Q psy15216 1437 KAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDGFRVTYL-KP 1514 (2602)
Q Consensus 1437 ~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~-~~~~G~~v~~v-~~ 1514 (2602)
....++++++++++|.+ ..++++++++|++.++.++. ++||+|+++.++|+++...+.. +...|++++++ +.
T Consensus 58 ~~~~~l~~~la~~~g~~--~~v~~~sGt~A~~~~l~~~~----~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 131 (421)
T 2ctz_A 58 PTVDVLEKRLAALEGGK--AALATASGHAAQFLALTTLA----QAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSRE 131 (421)
T ss_dssp HHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHC----CTTCEEEECSCCCHHHHHHHHTHHHHTTCEEEECCTT
T ss_pred hHHHHHHHHHHHHhCCC--ceEEecCHHHHHHHHHHHHh----CCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEECCC
Confidence 45788999999999975 44566667999999999876 7999999999999998877743 34569999998 75
Q ss_pred CCCCCcChhHHHhhccCCceEEEEeccccccccccChHHHHHHhhhcCCEEEEeccc-ccCcccccCCCCCccEEEEccc
Q psy15216 1515 KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQ-AVGKIDINIQNYKVDLMSFSAH 1593 (2602)
Q Consensus 1515 ~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~~ia~~~gi~vivD~a~-~~g~~~~~l~~~~~D~~v~S~~ 1593 (2602)
+ |+++++++|+++|++|++++++||+|.+.|+++|.++|++||+++|+|++| +.|... ....+++|++++|+|
T Consensus 132 ~-----d~~~l~~~i~~~~~~v~~~~~~n~~G~~~~l~~i~~~a~~~g~~livD~~~~~~g~~~-~~~~~~~Di~~~s~~ 205 (421)
T 2ctz_A 132 E-----RPEEFLALTDEKTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGMGGYLL-RPLAWGAALVTHSLT 205 (421)
T ss_dssp C-----CHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGGGGTSC-CGGGGTCSEEEEETT
T ss_pred C-----CHHHHHHhhccCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCcccccccC-CccccCCeEEEECCc
Confidence 4 899999999999999999999999999999999999999999999999999 877522 222457899999999
Q ss_pred cccCCCc--eEEEEEec---CC----CCccccccccCCccc--------------cCC----CC-CcchhHHHHHHHHHH
Q psy15216 1594 KIYGPKG--IGALYIRR---NP----RTRIEAQIHGGGHEY--------------GLR----SG-TLATHQIVGMGEAFR 1645 (2602)
Q Consensus 1594 K~~gp~G--~G~l~~~~---~~----~~~l~~~~~g~~~~~--------------~~~----~g-t~~~~~~~al~~aL~ 1645 (2602)
|+++++| +|++++.+ ++ .+.+.+...++.... +++ .| ..+....+....+++
T Consensus 206 K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~ 285 (421)
T 2ctz_A 206 KWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARVDGLRDQGQALGPFEAWVVLLGME 285 (421)
T ss_dssp TTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHT
T ss_pred ccccCCCCcEEEEEEeccchhhcccchhhhccccchhhhhhhhhhcchhHHHHHHHHHHHHhcCCCCCHHHHHHHHcCcc
Confidence 9666444 67777752 22 223443322221100 000 11 222222222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCC---------------CCCCceEEEEEecC--CcHHHHHhc--
Q psy15216 1646 LARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMN---------------NRIPHNLNISFNFI--EGESLLMAI-- 1706 (2602)
Q Consensus 1646 ~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~---------------~~~~~~~~~~~~~~--~~~~~~~~L-- 1706 (2602)
.+....++..++++++.+.|.+ .|++.....+. .....+..|.+.+. ....++..+
T Consensus 286 ----~l~~r~~~~~~~a~~l~~~L~~-~p~v~~v~~p~~~~~~~~~~~~~~~~~~~g~ivsf~l~~~~~~~~~~~~~l~~ 360 (421)
T 2ctz_A 286 ----TLSLRAERHVENTLHLAHWLLE-QPQVAWVNYPGLPHHPHHDRAQKYFKGKPGAVLTFGLKGGYEAAKRFISRLKL 360 (421)
T ss_dssp ----THHHHHHHHHHHHHHHHHHHHT-CTTEEEEECTTSTTCTTHHHHHHHHTTCCCSEEEEEETTHHHHHHHHHHTCSS
T ss_pred ----hHHHHHHHHHHhHHHHHHHHHh-CCCeeEEECCCCCCCCCHHHHHHhccCCCceEEEEEeCCCHHHHHHHHHhCCc
Confidence 2344566667889999999987 78887653221 12234455555431 233455555
Q ss_pred CCEEEccccccCC------CC--CChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1707 KDIAVSSGSACTS------AS--LEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1707 ~gI~v~~g~~~~~------~~--~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
.++.++.|..+.. .. ..+......+|+++ +.||+|++.+ +++.+++.|++
T Consensus 361 ~~~~~~~G~~~sl~~~~~~~~h~~~~~~~~~~~g~~~----~~vRlS~g~e----~~~~li~~l~~ 418 (421)
T 2ctz_A 361 ISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSP----EMVRLSVGLE----HVEDLKAELKE 418 (421)
T ss_dssp SEECSCCCCSSCEEECGGGTTTTTSCHHHHHHHTCCT----TEEEEECCSS----CHHHHHHHHHH
T ss_pred ceecccCCCCCceeeCCcccccccCCHHHHHhcCCCC----CeEEEEeCCC----CHHHHHHHHHH
Confidence 4556666633221 11 12222355677664 8999999975 45555555544
|
| >3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.9e-19 Score=234.23 Aligned_cols=312 Identities=14% Similarity=0.139 Sum_probs=200.6
Q ss_pred cchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHH-HHHhCCc
Q psy15216 33 HIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIR-KLENDGF 111 (2602)
Q Consensus 33 ~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~-~~~~~G~ 111 (2602)
+.+++...+..+++++++|+++|.+ ..++++|+++|+.+++.++. ++||+|+++++.|+++...+. .+...|+
T Consensus 74 ~~y~r~~~p~~~~le~~lA~l~g~~--~~v~~~sG~~Ai~~al~al~----~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~ 147 (430)
T 3ri6_A 74 HVYSRSSNPTVEDLEQRLKNLTGAL--GVLALGSGMAAISTAILTLA----RAGDSVVTTDRLFGHTLSLFQKTLPSFGI 147 (430)
T ss_dssp ------CCHHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHHC----CTTCEEEEETTCCHHHHHHHHTHHHHTTC
T ss_pred ccccCCCCHHHHHHHHHHHHHHCCC--cEEEECCHHHHHHHHHHHHh----CCCCEEEEcCCCchhHHHHHHHHHHHcCC
Confidence 4445444567899999999999975 36677788899999999887 899999999999999888665 4567799
Q ss_pred EEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHhcCCEEEEecccccccccccCCCCCccE
Q psy15216 112 RVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDL 191 (2602)
Q Consensus 112 ~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~~g~~livD~a~a~g~~~~dl~~~~~D~ 191 (2602)
++++++.+ |+++|+++++++|++|++++|+||||.+.|+++|+++|+++|+++|+|++++.+.. .+...+++|+
T Consensus 148 ~~~~v~~~-----d~~~l~~ai~~~t~~v~~e~p~NptG~~~dl~~i~~la~~~g~~livD~a~~~~~~-~~~~~~g~di 221 (430)
T 3ri6_A 148 EVRFVDVM-----DSLAVEHACDETTKLLFLETISNPQLQVADLEALSKVVHAKGIPLVVDTTMTPPYL-LEAKRLGVDI 221 (430)
T ss_dssp EEEEECTT-----CHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTSCTTT-CCGGGGTCSE
T ss_pred EEEEeCCC-----CHHHHHHhhCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCccccc-CChHHcCCEE
Confidence 99999865 89999999999999999999999999999999999999999999999999998775 3445678899
Q ss_pred EEeccccccCCCC---cEEEEEecCC-CC---ccccee--cCC-------C-ccccccccCcchhHHHHHHHHHHHHHHh
Q psy15216 192 MSFSAHKIYGPKG---IGALYIRRNP-RT---RIEAQI--HGG-------G-HEYGLRSGTLATHQIVGMGEAFRLARIE 254 (2602)
Q Consensus 192 ~~~S~~K~~Gp~G---~G~l~~~~~~-~~---~l~~~~--~g~-------~-~~~~~~~gt~~~~~~~al~~al~~~~~~ 254 (2602)
++.|++|++|++| .|+++.+.+. .. +...+. .+. . .......++.+....+.+..+++ .
T Consensus 222 v~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~~~~i~~~~~~~~~~~g~~~~~~~a~l~l~~l~----~ 297 (430)
T 3ri6_A 222 EVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKEVFQNLGPSLSPHNAYLQSLGLE----T 297 (430)
T ss_dssp EEEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHH----H
T ss_pred EEECCcccccCCCCceEEEEEECChHHhhhccchhhhhhhhchhhHHHHHHHHHHHhcCCCCCHHHHHHHHhhhh----h
Confidence 9999999777654 4555543321 10 000000 000 0 00001112233222222222332 3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCceEE-eCCCCCCCC------------c-eEEEEEcc-cChhHHHHHh--CCeEEcc
Q psy15216 255 MKEELKRILFLQKRLYNGLMESIEEIYI-NGDMNNRIP------------H-NLNISFNF-IEGESLLMAI--KDIAVSS 317 (2602)
Q Consensus 255 ~~~~~~~~~~l~~~l~~~L~~~~~g~~l-~~~~~~~~~------------~-~~~~~~~~-~~~~~~~~~L--~gI~v~~ 317 (2602)
+....++..+++.++.+.|.+ .|++.. ..|.-...| . ++.|.++. .....++..+ .++.++.
T Consensus 298 l~~r~~~~~~na~~la~~L~~-~p~v~~V~~P~l~~~p~~~~~~~~~g~Gg~~lsf~l~~~~~~~~~~~~l~~~~~~~s~ 376 (430)
T 3ri6_A 298 MALRIERSCQNAQELAHWLLS-IPQVKCVNHPSLPDSPFYAIAKRQFRYAGSILTFELESKEASYRFMDALKLIRRATNI 376 (430)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-CTTCEEEECTTSTTSTTHHHHHHHCSSCCSEEEEECSSHHHHHHHHHHCSSSEECSCC
T ss_pred HHHHHHHHHHHHHHHHHHHhC-CCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECCHHHHHHHHHhCCcceecCCC
Confidence 455566777888888888877 677763 322211111 1 44444442 2344667766 4566666
Q ss_pred cccCCCCCCChHHHHH--------HcCCCccCCCCeEEEecCCCCCHHHHHHHHHH
Q psy15216 318 GSACTSASLEPSYVLR--------ALGCNDELAHSSIRFTIGRFTTEKEIDFTIKL 365 (2602)
Q Consensus 318 g~~~~~~~~~~~~~~~--------~~g~~~~~~~~~iRis~~~~~t~edid~li~~ 365 (2602)
|..++.-....+..+. ..|+. +++||+|+|....++-++.+-++
T Consensus 377 G~~~sli~~p~~~~h~~~~~~~~~~~g~~----~~liRlsvG~E~~~dl~~dl~~a 428 (430)
T 3ri6_A 377 HDNKSLILSPYHVIYALNSHEERLKLEIS----PAMMRLSVGIEEIEDLKEDILQA 428 (430)
T ss_dssp SCSSCEEECTGGGC---------CGGGSC----TTEEEEECCSSCHHHHHHHHHHH
T ss_pred CCCCceeeCCcccccccCCHHHHHhcCCC----CCeEEEEeccCCHHHHHHHHHHh
Confidence 6555421000111111 23333 58999999975544433333333
|
| >4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.2e-20 Score=245.82 Aligned_cols=314 Identities=14% Similarity=0.097 Sum_probs=214.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhh--cCCCCCCCcchhhhHHHHHHHHHHHHHHHhCC------CCC--cEEEeCCHHHHH
Q psy15216 2 DYSATTPIDPRVVDKMIPYLRVQ--FGNPASRNHIYGWTAEKAIEKARNEVAQLIYA------DPR--EIIWTSGATESN 71 (2602)
Q Consensus 2 d~a~~~~~p~~v~~a~~~~l~~~--~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~------~~~--~Iv~t~g~T~al 71 (2602)
|..+.+|+++.+.+++.+.+... ..++. .....++|+.++++++. +++ +|++|+|+|+|+
T Consensus 61 d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~----------~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~t~al 130 (420)
T 4f4e_A 61 NEDGKIPLLRAVRDAEKARVEAGLPRGYLP----------IDGIAAYDASVQKLLLGDDSPLIAAGRVVTAQALGGTGAL 130 (420)
T ss_dssp CTTSCCCCCHHHHHHHHHHHHTCCCCCCCC----------TTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHH
T ss_pred CCCCCccCcHHHHHHHHHHhccCCCCCCCC----------CCCcHHHHHHHHHHhcCCCccccccCceEEEECCccHHHH
Confidence 45566677899999999988751 11211 11245677778777743 466 899999999999
Q ss_pred HHHHH--hcccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEecc--CCCCccChHHHHhhcc---CCceEEEEec
Q psy15216 72 NLAIK--GAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP--KNNGLITLSQLEEKIC---SDTILVSVML 144 (2602)
Q Consensus 72 ~~~~~--~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~--~~~~~ld~e~l~~~i~---~~tklv~i~~ 144 (2602)
++++. ++. ++||+|++++|.|+++...+... |++++.++. ++++.+|++++++.++ ++++++++++
T Consensus 131 ~~~~~~~~~~----~~gd~Vlv~~p~~~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~ 203 (420)
T 4f4e_A 131 KIGADFLRTL----NPKAKVAISDPSWENHRALFDMA---GFEVVAYPYYDAKTNGVNFDGMLAALNGYEPGTIVVLHAC 203 (420)
T ss_dssp HHHHHHHHHH----CTTCCEEEEESCCHHHHHHHHHT---TCCEEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECS
T ss_pred HHHHHHHHHh----CCCCEEEEeCCCcHhHHHHHHHc---CCeEEEeeeeccccCccCHHHHHHHHHhCCCCCEEEEeCC
Confidence 99954 444 79999999999999987766655 999999998 3467899999999997 7889999999
Q ss_pred ccCccccccc---HHHHHHHHHhcCCEEEEeccccccccc-----cc---C-CCCCccEEEeccccccCCCC--cEEEEE
Q psy15216 145 VNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQAVGKID-----IN---I-QNYKVDLMSFSAHKIYGPKG--IGALYI 210 (2602)
Q Consensus 145 ~~npTG~~~~---l~~I~~la~~~g~~livD~a~a~g~~~-----~d---l-~~~~~D~~~~S~~K~~Gp~G--~G~l~~ 210 (2602)
|+||||.+++ +++|+++|++||+++|+|++|+..... .. + ...+..+++.|+||.+|++| +||+++
T Consensus 204 p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~ 283 (420)
T 4f4e_A 204 CHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAAANLNVFVSSSFSKSFSLYGERVGALSI 283 (420)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTCGGGCEEEEEE
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHHhcCCCEEEEEeCCccCcCcCCCcEEEEE
Confidence 9999999988 557888899999999999998543221 00 1 12345688899999999888 899875
Q ss_pred ec---CCCCcccceecCCCccccccccCcchhHHHHHHHHHHHH------HHhHHHHHHHHHHHHHHHHHHHhhcc--Cc
Q psy15216 211 RR---NPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLA------RIEMKEELKRILFLQKRLYNGLMESI--EE 279 (2602)
Q Consensus 211 ~~---~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~------~~~~~~~~~~~~~l~~~l~~~L~~~~--~g 279 (2602)
.. ++++.+...... ..+....+++.....++..++... ..++++.+++++++++++.+.|.+.. ++
T Consensus 284 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 360 (420)
T 4f4e_A 284 ITDSKDEAARVLSQLKR---VIRTNYSNPPTHGGAIVAAVLASPELRASWVQELGEMRDRIRAMRNGLVERLKAAGIERD 360 (420)
T ss_dssp ECSSHHHHHHHHHHHHH---HHHTTTSSCCSHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSC
T ss_pred EcCCHHHHHHHHHHHHH---HHhcccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 32 222221111000 000112234555555555555521 34468888999999999999998722 24
Q ss_pred eEEeCCCCCCCCceEEEEEcccChhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHH
Q psy15216 280 IYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEK 357 (2602)
Q Consensus 280 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~e 357 (2602)
+.+..+... .+.+...+...+...+ +||.+.++ .|+|++.. +++
T Consensus 361 ~~~~~~~~g------~~~~~~~~~~~~~~~l~~~gI~v~~~---------------------------~Ris~~~~-~~~ 406 (420)
T 4f4e_A 361 FSFINAQRG------MFSYSGLTSAQVDRLREEFGIYAVST---------------------------GRICVAAL-NTR 406 (420)
T ss_dssp CTHHHHSCS------SEEECCCCHHHHHHHHHHHCEECCTT---------------------------SEEEGGGC-CTT
T ss_pred ceeECCCcc------EEEEeCCCHHHHHHHHHhCCEEecCC---------------------------CeEEEecC-CHH
Confidence 444333221 1333344444444444 58877631 29999754 557
Q ss_pred HHHHHHHHHHhh
Q psy15216 358 EIDFTIKLLKMK 369 (2602)
Q Consensus 358 did~li~~L~~~ 369 (2602)
++++++++|++.
T Consensus 407 ~i~~~~~~l~~~ 418 (420)
T 4f4e_A 407 NLDVVANAIAAV 418 (420)
T ss_dssp THHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 799999999863
|
| >3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.2e-20 Score=246.27 Aligned_cols=329 Identities=15% Similarity=0.169 Sum_probs=215.1
Q ss_pred CCCHHHHHHHHHHHhhcc--CCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccC
Q psy15216 1404 PIDPRVVDKMIPYLRVQF--GNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKR 1481 (2602)
Q Consensus 1404 ~~~~~v~eal~~~l~~~~--~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~ 1481 (2602)
..++.+.+++.+.+...+ ++|+...+..........+.+++++++++|++++++++++ |++|+..++.++. ++
T Consensus 41 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~v~~~s-Gs~a~~~a~~~~~----~~ 115 (420)
T 3gbx_A 41 YTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGADYANVQPHS-GSQANFAVYTALL----QP 115 (420)
T ss_dssp CCCHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHTCSEEECCCSS-HHHHHHHHHHHHC----CT
T ss_pred CCCHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhCCCCceeEecC-cHHHHHHHHHHhc----CC
Confidence 368899999998886544 5665433322222234556677899999999766665554 5889999998886 89
Q ss_pred CCEEEEcCCCCcchHHHHHHHH--hCCcEEEEeccCCCCCcChhHHHhhccC-CceEEEEeccccccccccChHHHHHHh
Q psy15216 1482 GKHIITVQTEHKSVLDSIRKLE--NDGFRVTYLKPKNNGLITLSQLEEKICS-DTILVSVMLVNNEIGVIQPILEIGELC 1558 (2602)
Q Consensus 1482 gd~Vlv~~~~~~s~~~~~~~~~--~~G~~v~~v~~~~~~~id~d~l~~~i~~-~t~lv~l~~~~n~tG~~~~l~~I~~ia 1558 (2602)
||+|+++.++|+++........ ..+..+..++.+.++.+|+++|++++++ ++++|++++++|+ ...|+++|.++|
T Consensus 116 gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~--~~~~l~~l~~l~ 193 (420)
T 3gbx_A 116 GDTVLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGIDESGKIDYDEMAKLAKEHKPKMIIGGFSAYS--GVVDWAKMREIA 193 (420)
T ss_dssp TCEEEEEEEC------------CHHHHSEEEEEEECTTCSCCHHHHHHHHHHHCCSEEEECCTTCC--SCCCHHHHHHHH
T ss_pred CCEEEecchhhcceeccchhhhhcccceeEEeccCCccCCcCHHHHHHHHHhcCCeEEEEecCccC--CccCHHHHHHHH
Confidence 9999999999998543322221 1234555666677788999999999986 5999999988875 478999999999
Q ss_pred hhcCCEEEEecccccCcc-----cccCCCCCccEEEEcccccc-CCCceEEEEEec---CCCCccccccccCCccccCCC
Q psy15216 1559 RSKGVIFHCDAAQAVGKI-----DINIQNYKVDLMSFSAHKIY-GPKGIGALYIRR---NPRTRIEAQIHGGGHEYGLRS 1629 (2602)
Q Consensus 1559 ~~~gi~vivD~a~~~g~~-----~~~l~~~~~D~~v~S~~K~~-gp~G~G~l~~~~---~~~~~l~~~~~g~~~~~~~~~ 1629 (2602)
++||+++|+|++|+.|.. +..+. .+|++++|+||.+ ||+| |+++.++ ++.+.+.+..+.+ ..
T Consensus 194 ~~~~~~li~De~~~~~~~~~~~~~~~~~--~~di~~~s~sK~~~g~~g-g~~~~~~~~~~~~~~~~~~~~~~------~~ 264 (420)
T 3gbx_A 194 DSIGAYLFVDMAHVAGLIAAGVYPNPVP--HAHVVTTTTHKTLAGPRG-GLILAKGGDEELYKKLNSAVFPS------AQ 264 (420)
T ss_dssp HHTTCEEEEECTTTHHHHHTTSSCCSTT--TSSEEEEESSGGGCSCSC-EEEEESSCCHHHHHHHHHHHC----------
T ss_pred HHcCCEEEEECCcchhceecccCCcccc--cCCEEEeecccCCCCCCc-eEEEEcCCcHHHHHHhhhhcCCC------CC
Confidence 999999999999876543 22222 3789999999965 7887 9999987 3333343322211 13
Q ss_pred CCcchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEec--CCcHHHHHhc
Q psy15216 1630 GTLATHQIVGMGEAFRL-ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF--IEGESLLMAI 1706 (2602)
Q Consensus 1630 gt~~~~~~~al~~aL~~-~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~L 1706 (2602)
++++...+.++..++.. ...++++..++..++++++.+.|.+ .++.+..+... .....+.++. .+...+...|
T Consensus 265 ~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~--~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l 340 (420)
T 3gbx_A 265 GGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVFLN--RGYKVVSGGTE--NHLFLLDLVDKNLTGKEADAAL 340 (420)
T ss_dssp CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHH--TTCEEGGGSCS--SSEEEEECGGGTCCHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHh--cCCeeccCCCC--CeEEEEEcCCCCCCHHHHHHHH
Confidence 46667777777666653 3456788899999999999999987 57777642111 2233333332 2344555555
Q ss_pred --CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCC----CCHHHHHHHHHHHHHh
Q psy15216 1707 --KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRF----TTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1707 --~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~----~t~edid~li~~L~~~ 1765 (2602)
+||.+++...+... ......+.+||+++.. .+++++++++++|++.
T Consensus 341 ~~~gi~v~~~~~~~~~-------------~~~~~~~~iRi~~~~~~~~~~~~~~i~~~~~~l~~~ 392 (420)
T 3gbx_A 341 GRANITVNKNSVPNDP-------------KSPFVTSGIRIGSPAVTRRGFKEAEVKELAGWMCDV 392 (420)
T ss_dssp HHTTEECEEECCTTCS-------------SCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHCCcEeccccCCCCc-------------cccCCCcceEEecchhcccCCCHHHHHHHHHHHHHH
Confidence 79999873322110 0001125699998654 3589999999999874
|
| >1su0_B NIFU like protein ISCU; structural genomics, BSGC structure funded by NI protein structure initiative, PSI; 2.30A {Streptococcus pyogenes} SCOP: d.224.1.2 | Back alignment and structure |
|---|
Probab=99.83 E-value=4.7e-21 Score=207.14 Aligned_cols=88 Identities=32% Similarity=0.534 Sum_probs=83.3
Q ss_pred hhhhhhHhhhhcccCCCCCCCCCCCCCcceeeeeCCCCcccEEEEEEEEcCCCceEeeeeeccccchhHhhHHHHHHHHc
Q psy15216 371 FFMSYSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKTYGCGSAIASSSLVTEWVK 450 (2602)
Q Consensus 371 ~~~~y~~~~~~hy~~p~n~g~~~~~~~~~~~~~~~~~~cgd~~~~~~~~~~~~~i~~~~~~~~gc~~~~a~~s~~~~~~~ 450 (2602)
++++|+++++|||+||||+|.+ +++ ++++.+||+|||.|+|+|+|+ +|+|+|++|+|+||+++|||||+++|+++
T Consensus 6 l~~lY~~~Ildh~~nP~n~G~l-~~~---~~~~~~np~CGD~i~l~lkv~-~g~I~d~~F~~~GCais~ASaS~mte~v~ 80 (159)
T 1su0_B 6 LNHLYMAVVADHSKRPHHHGQL-DGV---EAVQLNNPTCGDVISLTVKFD-EDKIEDIAFAGNGCTISTASSSMMTDAVI 80 (159)
T ss_dssp CCHHHHHHHHHHHHSCSSBSCC-TTC---CCEEEECSSSCCEEEEEEEES-SSSEEEEEEEEECCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCCCCCC-CCC---eEEeecCCCCCCEEEEEEEEC-CCEEEEEEEEecCCHHHHHHHHHHHHHHc
Confidence 5789999999999999999999 887 788889999999999999995 78999999999999999999999999999
Q ss_pred CCChhhhhhcccc
Q psy15216 451 GKTLDEAMSIKNT 463 (2602)
Q Consensus 451 g~~~~e~~~i~~~ 463 (2602)
|||++||..+.+.
T Consensus 81 Gkt~~Ea~~i~~~ 93 (159)
T 1su0_B 81 GKSKEEALALADI 93 (159)
T ss_dssp TCCHHHHHHHHHH
T ss_pred CCcHHHHHHHHHH
Confidence 9999999999863
|
| >1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1e-19 Score=248.63 Aligned_cols=295 Identities=16% Similarity=0.079 Sum_probs=215.6
Q ss_pred HHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCC
Q psy15216 1438 AIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN 1517 (2602)
Q Consensus 1438 ~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~ 1517 (2602)
.+.++++.+|+++|++. .+++++|+|+|+..+++++. ++||+|+++.+.|+++...+ +...|+++++++...+
T Consensus 174 ~i~e~e~~lA~~~gae~-~i~v~nGtt~an~~ai~al~----~pGD~VLv~~~~H~S~~~~~--~~l~Ga~~v~v~~~~~ 246 (730)
T 1c4k_A 174 PAVAAEKHAARVYNADK-TYFVLGGSSNANNTVTSALV----SNGDLVLFDRNNHKSVYNSA--LAMAGGRPVYLQTNRN 246 (730)
T ss_dssp HHHHHHHHHHHHTTCSE-EEEESSHHHHHHHHHHHHHC----CTTCEEEEETTCCHHHHHHH--TTTTCCEEEEECEEEC
T ss_pred HHHHHHHHHHHHHCCCc-EEEECCHHHHHHHHHHHHhc----CCCCEEEEcCCchHHHHHHH--HHHCCCEEEEEeCCcc
Confidence 57899999999999863 47788888899999999987 89999999999999987761 2334999999876432
Q ss_pred -----CCcChhHH-----HhhccCC------c----eEEEEeccccccccccChHHHHHHhhhcCCEEEEecccccCc--
Q psy15216 1518 -----GLITLSQL-----EEKICSD------T----ILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGK-- 1575 (2602)
Q Consensus 1518 -----~~id~d~l-----~~~i~~~------t----~lv~l~~~~n~tG~~~~l~~I~~ia~~~gi~vivD~a~~~g~-- 1575 (2602)
+.+|+++| +++|+++ + ++++++++ |++|.+.|+++|+++|++||+++++|+||+.+.
T Consensus 247 ~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~dl~~I~~la~~~g~~livDeAh~~~~~f 325 (730)
T 1c4k_A 247 PYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQF 325 (730)
T ss_dssp TTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEECHHHHHHHHGGGBSEEEEECTTCCGGGS
T ss_pred ccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecCHHHHHHHHHHcCCeEEEEccccccccc
Confidence 34789988 9999876 5 89999998 589999999999999999999999999996421
Q ss_pred -------ccccCCCCCcc----EEEEcccc-ccCCCceEEEEEecCCCCc----cccccccCCccccCCCCCcchhHHHH
Q psy15216 1576 -------IDINIQNYKVD----LMSFSAHK-IYGPKGIGALYIRRNPRTR----IEAQIHGGGHEYGLRSGTLATHQIVG 1639 (2602)
Q Consensus 1576 -------~~~~l~~~~~D----~~v~S~~K-~~gp~G~G~l~~~~~~~~~----l~~~~~g~~~~~~~~~gt~~~~~~~a 1639 (2602)
.+++...+++| ++++|+|| +.|+.+.|+++++++.+.. +...... .....+.++++++..+++
T Consensus 326 ~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~g~~~gg~I~v~~~~l~g~~~~i~~~~~~-~~~~~~~stsp~~~~iaa 404 (730)
T 1c4k_A 326 IPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSHIKGQLRYCDHKHFN-NSFNLFMSTSPFYPMYAA 404 (730)
T ss_dssp SGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCTTCEEEEEECGGGTTSTTCCCHHHHH-HHHHHHSCSSCCHHHHHH
T ss_pred CcccCCcCcccccccCCCCCCEEEEECCCCCCCCCCCEEEEEecchhhcCcccccCHHHHH-HHHHHhCCCCCcHHHHHH
Confidence 12333344677 99999999 6678878999998764311 1100000 001234567889999999
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCC--------------------------------C-C
Q psy15216 1640 MGEAFRLARI-EMKEELKRILFLQKRLYNGLMESIEEIYINGDMN--------------------------------N-R 1685 (2602)
Q Consensus 1640 l~~aL~~~~~-~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~--------------------------------~-~ 1685 (2602)
+.+|+++... ...+..++..++++++++.|.+.++|+.+..+.. . .
T Consensus 405 l~aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 484 (730)
T 1c4k_A 405 LDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWRFEKGAKWHAYEGY 484 (730)
T ss_dssp HHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGGGBCCTTCTTTCCTTC
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhCCCeEEccccccccccccccccccccccchhhccCccchhcccccc
Confidence 9889886554 4566778888999999999976457888865431 0 0
Q ss_pred -------CCceEEEEEec------------CCcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEE
Q psy15216 1686 -------IPHNLNISFNF------------IEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRF 1744 (2602)
Q Consensus 1686 -------~~~~~~~~~~~------------~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRl 1744 (2602)
-|.-..+..++ .+...+...| +||.+... ..+.+|+
T Consensus 485 ~~~~~~idp~kv~i~~pg~~~~~g~~~~~g~~~~~l~~~L~e~GI~v~~~-----------------------~~~~ir~ 541 (730)
T 1c4k_A 485 GDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDHGIIPEKS-----------------------DLNSILF 541 (730)
T ss_dssp CTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHHTTCCCSEE-----------------------CSSEEEE
T ss_pred CCcccccCCeEEEEEeCCcccccccccccCCCHHHHHHHHHHCCcEEEEC-----------------------CCCeEEE
Confidence 01113333332 2334555555 56655421 1267999
Q ss_pred ecCCCCCHHHHHHHHHHHHH
Q psy15216 1745 TIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1745 s~~~~~t~edid~li~~L~~ 1764 (2602)
+++.++|.+++++++++|++
T Consensus 542 ~~s~g~t~e~i~~Ll~aL~~ 561 (730)
T 1c4k_A 542 LMTPAETPAKMNNLITQLLQ 561 (730)
T ss_dssp ECCTTCCHHHHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999987
|
| >2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.3e-20 Score=245.94 Aligned_cols=314 Identities=13% Similarity=0.047 Sum_probs=215.8
Q ss_pred CCCCCCCHHHHHHHHHHHhhh--cCCCCCCCcchhhhHHHHHHHHHHHHHHHh-CC--CCCcEEE--eCCHHHHHHHHHH
Q psy15216 4 SATTPIDPRVVDKMIPYLRVQ--FGNPASRNHIYGWTAEKAIEKARNEVAQLI-YA--DPREIIW--TSGATESNNLAIK 76 (2602)
Q Consensus 4 a~~~~~p~~v~~a~~~~l~~~--~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~-g~--~~~~Iv~--t~g~T~al~~~~~ 76 (2602)
.+.+++++.+.+++.+.+... ..++. .....++|+++++++ +. ++++|++ |+|+++|+++++.
T Consensus 40 ~~~~~~~~~v~~a~~~~~~~~~~~~y~~----------~~g~~~lr~~la~~~~~~~~~~~~v~~~~~~g~~~a~~~~~~ 109 (394)
T 2ay1_A 40 TGHTPIMRAVHAAEQRMLETETTKTYAG----------LSGEPEFQKAMGELILGDGLKSETTATLATVGGTGALRQALE 109 (394)
T ss_dssp TSCCCCCHHHHHHHHHHHHHCCCCCCCC----------SSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHHHHHHHHH
T ss_pred CCCccCcHHHHHHHHHhcCCcccCCCCC----------CCCcHHHHHHHHHHHhCCCCCcccEEEEecCCchhHHHHHHH
Confidence 334467899999998877531 11211 112467888899887 55 6789999 9999999999998
Q ss_pred hcccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccC--CCCccChHHHHhhccC---CceEEEEecccCcccc
Q psy15216 77 GAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK--NNGLITLSQLEEKICS---DTILVSVMLVNNEIGV 151 (2602)
Q Consensus 77 ~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~--~~~~ld~e~l~~~i~~---~tklv~i~~~~npTG~ 151 (2602)
++.. +.+||+|+++.|.|+++...+... |++++.++.+ +++.+|++++++++++ +++++++++|+||||.
T Consensus 110 ~~~~--~~~gd~vl~~~p~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~nptG~ 184 (394)
T 2ay1_A 110 LARM--ANPDLRVFVSDPTWPNHVSIMNFM---GLPVQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLLHGCCHNPTGA 184 (394)
T ss_dssp HHHH--HCTTCCEEEEESCCHHHHHHHHHH---TCCEEEEECEETTTTEECHHHHHHHHHTCCTTCEEEEESSSCTTTCC
T ss_pred HHHh--cCCCCEEEEcCCCChhHHHHHHHc---CCceEEEecccccCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCC
Confidence 8751 238999999999999987777665 8999999875 5677999999999874 3678888999999999
Q ss_pred ccc---HHHHHHHHHhcCCEEEEecccccccc-------ccc-CCCCC-ccEEEeccccccCCCC--cEEEEE---ecCC
Q psy15216 152 IQP---ILEIGELCRSKGVIFHCDAAQAVGKI-------DIN-IQNYK-VDLMSFSAHKIYGPKG--IGALYI---RRNP 214 (2602)
Q Consensus 152 ~~~---l~~I~~la~~~g~~livD~a~a~g~~-------~~d-l~~~~-~D~~~~S~~K~~Gp~G--~G~l~~---~~~~ 214 (2602)
++| +++|.++|++||+++|+|++|+.... ++. +...+ ..+++.|+||.+|++| +||+++ ++++
T Consensus 185 ~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~ 264 (394)
T 2ay1_A 185 NLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIYRERTGCLLALCADAAT 264 (394)
T ss_dssp CCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCGGGCEEEEEEECSSHHH
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHHHHhhcCCCEEEEEeccCCCcCcCCccceEEEEeCCHHH
Confidence 998 45788999999999999999975322 121 22223 2477889999999888 599998 4443
Q ss_pred CCcccceecCCCccccccccCcchhHHHHHHHHHHHH------HHhHHHHHHHHHHHHHHHHHHHhhccC--ceEEeCCC
Q psy15216 215 RTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLA------RIEMKEELKRILFLQKRLYNGLMESIE--EIYINGDM 286 (2602)
Q Consensus 215 ~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~------~~~~~~~~~~~~~l~~~l~~~L~~~~~--g~~l~~~~ 286 (2602)
++.+...... ......++++.....++.++|+.. ..+.++..++++++++++.+.|.+..+ ++++..+.
T Consensus 265 ~~~l~~~~~~---~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 341 (394)
T 2ay1_A 265 RELAQGAMAF---LNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRDLSGSDRFGFVAEH 341 (394)
T ss_dssp HHHHHHHHHH---HHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTTHHHHC
T ss_pred HHHHHHHHHH---HHhhhcCCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeeEEcCC
Confidence 3332211100 001112344666666666777632 245778888999999999999877211 24333221
Q ss_pred CCCCCceEEEEEcccChhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHH
Q psy15216 287 NNRIPHNLNISFNFIEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIK 364 (2602)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~ 364 (2602)
. .. +++ ...+...+...+ +||.+++ .+||+++ ++++++++++++
T Consensus 342 ~---g~--~~~-~~~~~~~~~~~l~~~gi~v~~---------------------------~~Ris~~-~~~~~~i~~~~~ 387 (394)
T 2ay1_A 342 R---GM--FSR-LGATPEQVKRIKEEFGIYMVG---------------------------DSRINIA-GLNDNTIPILAR 387 (394)
T ss_dssp C---SS--EEE-CCCCHHHHHHHHHHHCEECCT---------------------------TCEEEGG-GCCTTTHHHHHH
T ss_pred c---eE--EEe-eCCCHHHHHHHHHhCCEEecC---------------------------CCeEEee-cCCHhhHHHHHH
Confidence 1 11 122 223333443333 5887752 2699998 478999999999
Q ss_pred HHHhh
Q psy15216 365 LLKMK 369 (2602)
Q Consensus 365 ~L~~~ 369 (2602)
+|++.
T Consensus 388 ~l~~~ 392 (394)
T 2ay1_A 388 AIIEV 392 (394)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 99864
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} | Back alignment and structure |
|---|
Probab=99.82 E-value=7.7e-20 Score=246.12 Aligned_cols=284 Identities=12% Similarity=0.049 Sum_probs=195.6
Q ss_pred CCcEEEeCCHHHHHHHHHHhcccc-cccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccC----CCCccChHHHHhh
Q psy15216 58 PREIIWTSGATESNNLAIKGAAHF-YKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK----NNGLITLSQLEEK 132 (2602)
Q Consensus 58 ~~~Iv~t~g~T~al~~~~~~l~~~-~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~----~~~~ld~e~l~~~ 132 (2602)
+++|++|+|+|+|+++++.++... .+++||+|+++.|+|+++...+... |+.++.++++ .++.+|+++|+++
T Consensus 164 ~~~i~~t~G~t~al~~~~~~l~~~~l~~~gd~Viv~~p~~~~~~~~~~~~---g~~~~~v~~~~~~~~~~~~d~~~l~~~ 240 (533)
T 3f6t_A 164 QTDLFPTEGGTAAIVYAFHSLAENHLLKKGDKIAINEPIFTPYLRIPELK---DYELVEVDLHSYEKNDWEIEPNEIEKL 240 (533)
T ss_dssp GEEEEEEEHHHHHHHHHHHHHHHTTSSCTTCEEEEESSCCHHHHTSGGGG---GSEEEEECCCEETTTTSEECHHHHHHH
T ss_pred cceEEEECCHHHHHHHHHHHhhhhhccCCcCEEEEcCCCcHHHHHHHHHc---CCeEEEEEecCCcccCCCCCHHHHHHH
Confidence 368999999999999999983100 1389999999999999976655544 8899998875 3578999999999
Q ss_pred ccCCceEEEEecccCcccccccHH---HHHHHHH-hcCCEEEEecccccccc-cccCC--CCCccEEEeccccccCCCC-
Q psy15216 133 ICSDTILVSVMLVNNEIGVIQPIL---EIGELCR-SKGVIFHCDAAQAVGKI-DINIQ--NYKVDLMSFSAHKIYGPKG- 204 (2602)
Q Consensus 133 i~~~tklv~i~~~~npTG~~~~l~---~I~~la~-~~g~~livD~a~a~g~~-~~dl~--~~~~D~~~~S~~K~~Gp~G- 204 (2602)
+++++++|++++|+||||.++|.+ +|+++|+ +||+++|+|++|+.... ...+. ..+.++++.|+||.+|++|
T Consensus 241 l~~~~k~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~ 320 (533)
T 3f6t_A 241 KDPSIKALIVVNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPNFKSIYSVVPYNTMLVYSYSKLFGCTGW 320 (533)
T ss_dssp SCTTEEEEEEESSCTTTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTGGGSTTCCCHHHHSGGGEEEEEESHHHHTCGGG
T ss_pred hCCCCeEEEEeCCCCCCccccCHHHHHHHHHHHHhCCCCEEEEcCCccccccCccCHhhcCCCCEEEEecCcccCCCccc
Confidence 999999999999999999999977 7778888 68999999999874221 11111 1234699999999999888
Q ss_pred -cEEEEEecC-----CCCccccee-------cC------------------CCccccccccCcchhHHHHHH-HHHHHH-
Q psy15216 205 -IGALYIRRN-----PRTRIEAQI-------HG------------------GGHEYGLRSGTLATHQIVGMG-EAFRLA- 251 (2602)
Q Consensus 205 -~G~l~~~~~-----~~~~l~~~~-------~g------------------~~~~~~~~~gt~~~~~~~al~-~al~~~- 251 (2602)
+||++++++ ++..+.+.. ++ .........++++.+...++. .++..+
T Consensus 321 RiG~l~~~~~~~~~~li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~a~a~~a~~~L~ 400 (533)
T 3f6t_A 321 RLGVIALNEKNVFDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEALFSMTHLL 400 (533)
T ss_dssp CEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGCSCCHHHHHHHHHHHHHHHT
T ss_pred ceEEEEECcHHHHHHHHHhcchhhHHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHh
Confidence 899999987 444432100 00 000111223344544444421 123322
Q ss_pred --------HHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc-----------------cChhHH
Q psy15216 252 --------RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-----------------IEGESL 306 (2602)
Q Consensus 252 --------~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~-----------------~~~~~~ 306 (2602)
..+.++.+++++++++.+.+.|. + ++....+.. .....+.++. .+..++
T Consensus 401 ~~~g~~~~~~~~~~~~~~~~~r~~~l~~~L~--~-~~~~~~~~~---g~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~ 474 (533)
T 3f6t_A 401 TSTNGGSDDPYIDIARKLVSERYDQLHDAMQ--A-PKDETDTNT---HYYSLIDIYRLAEKIYGKEFRDYLTNNFEQVDF 474 (533)
T ss_dssp TCBGGGTBCHHHHHHHHHHHHHHHHHHHHHT--C-CCCCSTTBC---CSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHH
T ss_pred hhccccchHHHHHHHHHHHHHHHHHHHHhcC--C-CccccCCCc---eEEEEEehHhhhhhccchHHHHHhhccCCHHHH
Confidence 24567788888888999998884 2 333322211 1223333332 133445
Q ss_pred HHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 307 LMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 307 ~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
+..+ +||.+.+|..|..+ .+++|+|++. .++++++.++++|++.
T Consensus 475 ~~~ll~~~GV~v~pg~~f~~~------------------~~~iRls~a~-~~~e~i~~~i~~L~~~ 521 (533)
T 3f6t_A 475 LLKLAEKNGVVLVDGVGFGAK------------------PGELRVSQAN-LPTEDYALIGKQVLEL 521 (533)
T ss_dssp HHHHHHHTTSSSCTTEEECSS------------------TTEEEEESSS-SCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCEEEeCCcccCCC------------------CCEEEEEEee-CCHHHHHHHHHHHHHH
Confidence 4444 69999999888653 3799999964 4789999999999964
|
| >3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} | Back alignment and structure |
|---|
Probab=99.82 E-value=7e-20 Score=241.08 Aligned_cols=312 Identities=11% Similarity=0.024 Sum_probs=215.6
Q ss_pred CCCCCHHHHHHHHHHHhh-ccCCCCCccchhHHHHHHHHHHHHHHHHHHh-CC-CCC---cEEEeCCHHHHHHHHHHhhh
Q psy15216 1402 TTPIDPRVVDKMIPYLRV-QFGNPASRNHIYGWTAEKAIEKARNEVAQLI-YA-DPR---EIIWTSGATESNNLAIKGAA 1475 (2602)
Q Consensus 1402 ~~~~~~~v~eal~~~l~~-~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~-g~-~~~---~iv~t~gaT~al~~al~~l~ 1475 (2602)
..+.++.+.+++.+.... ...++.. ....++|+++++++ +. .++ +|++|+|+++|+..++.++.
T Consensus 54 ~~~~~~~v~~a~~~~~~~~~~~y~~~----------~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~ 123 (418)
T 3rq1_A 54 NLVFLKTVKEEYLSLSDSEHVGYAPI----------AGIPDFLCAAEKECFGNFRPEGHIRSIATAGGTGGIHHLIHNYT 123 (418)
T ss_dssp CBCCCHHHHHHHHTCCHHHHHSCCCT----------TCCHHHHHHHHHHHHGGGCCSSEEEEEEESHHHHHHHHHHHHHS
T ss_pred CccccHHHHHHHHHhcccccCCCCCC----------CChHHHHHHHHHHHhcccCccccccEEECCchHHHHHHHHHHhc
Confidence 456777888887665432 2222221 01356778888866 22 255 89999999999999999987
Q ss_pred hhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccC-CCCCcChhHHHhhccC----Cce-EEEEecc-ccccccc
Q psy15216 1476 HFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK-NNGLITLSQLEEKICS----DTI-LVSVMLV-NNEIGVI 1548 (2602)
Q Consensus 1476 ~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~-~~~~id~d~l~~~i~~----~t~-lv~l~~~-~n~tG~~ 1548 (2602)
++||+|+++.|.|+++...+... |++++.++.+ .++.+|+++|++++++ +++ ++++++| +||||.+
T Consensus 124 ----~~gd~Vl~~~p~~~~~~~~~~~~---g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~~~~~vi~~~p~~NPtG~~ 196 (418)
T 3rq1_A 124 ----EPGDEVLTADWYWGAYRVICSDT---GRTLVTYSLFDEHNNFNHEAFQNRVNELAAKQTNVVVIFNTPGNNPTGYS 196 (418)
T ss_dssp ----CTTCEEEEESSCCTHHHHHHHHT---TCEEEEECSBCTTSSBCHHHHHHHHHHHHHHCSEEEEEEECSSCTTTCCC
T ss_pred ----CCCCEEEECCCCchhHHHHHHHc---CCEEEEEeeeCCCCCcCHHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCC
Confidence 89999999999999988766555 9999999985 4568999999999985 666 8889999 9999999
Q ss_pred cChHH---HHHHhh------hcCCEEEEecccccCcc------c--ccCCCCCcc---EEEEccccccCCCc--eEEEEE
Q psy15216 1549 QPILE---IGELCR------SKGVIFHCDAAQAVGKI------D--INIQNYKVD---LMSFSAHKIYGPKG--IGALYI 1606 (2602)
Q Consensus 1549 ~~l~~---I~~ia~------~~gi~vivD~a~~~g~~------~--~~l~~~~~D---~~v~S~~K~~gp~G--~G~l~~ 1606 (2602)
+|.++ |+++|+ +||+++|+|++|..... + ........+ +++.|+||.+|++| +||+++
T Consensus 197 ~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~ 276 (418)
T 3rq1_A 197 IEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAFFNKFSHLPKEILTCVCYSLSKGFTMYGQRVGAMIG 276 (418)
T ss_dssp CCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHHHHGGGGGGTTCCTTEEEEEEEESTTTTTCCSSCCEEEEE
T ss_pred CCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCChHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCcCCcceEEEE
Confidence 99555 455555 89999999999742111 1 111222333 77789999888777 799998
Q ss_pred ---ecCCCCccccccccCCccccCCCCCcchhHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHhhcCCcEE
Q psy15216 1607 ---RRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLA------RIEMKEELKRILFLQKRLYNGLMESIEEIY 1677 (2602)
Q Consensus 1607 ---~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~------~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~ 1677 (2602)
++++++.+....... ......+++...+.++..+++.. .....+.++++.++++++.+.|.+ . ++.
T Consensus 277 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~ 351 (418)
T 3rq1_A 277 ISDDEEIADEFFEVNKST---SRATWSNICRPAMRTMANIVADPAKFKEYEAERNCYYQLIRDRADIFKQEAAQ-V-GLP 351 (418)
T ss_dssp EESSHHHHHHHHHHHHHH---HHHHTSSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-TCC
T ss_pred EeCCHHHHHHHHHHHHHH---HhhccCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c-CCC
Confidence 666665554321100 00001245666666666666421 223456677888889999999987 3 555
Q ss_pred EeCCCCCCCCceEEEEEecCCcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHH
Q psy15216 1678 INGDMNNRIPHNLNISFNFIEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEI 1755 (2602)
Q Consensus 1678 i~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edi 1755 (2602)
+..+... .++++...+..++...| +||.+++|. +++|||++ ..+.+++
T Consensus 352 ~~~~~~~-----~~~~~~~~~~~~~~~~l~~~gi~v~~g~------------------------~~iRis~~-~~~~~~i 401 (418)
T 3rq1_A 352 MLPYRGG-----FFITIPTDSANAICEELKKEHIYVIALA------------------------NGIRIAAC-GIPKCQM 401 (418)
T ss_dssp CCCCCSS-----SEEEEECTTHHHHHHHHHHTTEECEECS------------------------SEEEEEGG-GSCHHHH
T ss_pred CCCCCce-----EEEEcCCCCHHHHHHHHHhCCEEEecCC------------------------CCeEEEEe-cCCHHHH
Confidence 4432211 12333334566666666 899998762 67999987 4589999
Q ss_pred HHHHHHHHHh
Q psy15216 1756 DFTIKLLKMK 1765 (2602)
Q Consensus 1756 d~li~~L~~~ 1765 (2602)
++++++|++.
T Consensus 402 ~~~~~~l~~~ 411 (418)
T 3rq1_A 402 TGLAEKIYNA 411 (418)
T ss_dssp TTHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999973
|
| >1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=2.5e-20 Score=218.12 Aligned_cols=138 Identities=54% Similarity=0.830 Sum_probs=128.3
Q ss_pred eccccccceEeeeccEEEEEEecCCCCCCCcEEEEEeccccccceeeeEeecCccccccCceeeeeEecCCCCCCCCccE
Q psy15216 1011 LDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRAR 1090 (2602)
Q Consensus 1011 ~dv~~~~~gi~~~~~~~~~ii~~~t~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~i~~~~~g~~~ 1090 (2602)
.||+|++|||++.+|.|.+||+||++||+++++.|+|..|+|+.+.|.||||++..+.+|..||+|.|+|+||.|+|.++
T Consensus 1 ~Dv~p~slGie~~~g~~~~li~rnt~iP~~k~~~f~t~~d~Q~~v~i~v~qGe~~~~~~n~~Lg~f~l~gi~~~p~G~~~ 80 (227)
T 1u00_A 1 MDVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDCRSLARFALRGIPALPAGGAH 80 (227)
T ss_dssp CCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEECSSTTCCCEEEEEEECSSSBGGGSEEEEEEEECCCCCCSTTCSC
T ss_pred CCcccceEEEEEeCCEEEEEEeCcCccCceEEEEEEecCCCceEEEEEEEecCCccCCCCCEEEEEEEeCCCCCCCCceE
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCCeeEEEEEEEecCCceEEEEEecCCCCCHHHHHhhhhccccCCCchhHHHH
Q psy15216 1091 IKVTYQVDADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKNGAIFNENSGISLCDALL 1150 (2602)
Q Consensus 1091 i~v~f~~d~~g~l~v~a~~~~~g~~~~~~~~~~~~l~~~~i~~~~~~~~~~g~~~~~~~~ 1150 (2602)
|+|+|+||.||+|+|+|.+..||++..++|....+||++||++++ ++++-+..-+...
T Consensus 81 I~Vtf~iD~nGiL~V~a~d~~tg~~~~i~i~~~~~Ls~eei~~~~--~~~~~~~~~D~~~ 138 (227)
T 1u00_A 81 IRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYGLTDSEIASMI--KDSMSYAEQDVKA 138 (227)
T ss_dssp EEEEEEECTTCCEEEEEEETTTCCEEEEEECCCSCCCHHHHHHHH--HHHHHTHHHHHHH
T ss_pred EEEEEEECCCCcEEEEeecccccccceEEEEeccCCCHHHHHHHH--HHHHhhhcccHHH
Confidence 999999999999999999999999999999998889999999976 6555554444443
|
| >2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=8.4e-20 Score=235.48 Aligned_cols=303 Identities=12% Similarity=0.041 Sum_probs=205.1
Q ss_pred CCCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCC-CCcEEEeCCHHHHHHHHHHhccccccc
Q psy15216 6 TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYAD-PREIIWTSGATESNNLAIKGAAHFYKK 84 (2602)
Q Consensus 6 ~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~-~~~Iv~t~g~T~al~~~~~~l~~~~~~ 84 (2602)
.+++|+.+++++.. +.+| ....+++++.+++++|++ ++++++++|+|+|+++++.++
T Consensus 39 ~~~~~~~v~~a~~~-----~~~~-----------~~~~~~~~~~~a~~~g~~~~~~~~~~~ggt~a~~~~~~~~------ 96 (374)
T 2aeu_A 39 GFLIDEKDKALLNT-----YIGS-----------SYFAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILAL------ 96 (374)
T ss_dssp CCCCCHHHHHHHTS-----TTHH-----------HHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHH------
T ss_pred CCCCCHHHHHHHHH-----hcCc-----------hHHHHHHHHHHHHHhCCCCcceEEEEcChHHHHHHHHHhC------
Confidence 45888888888751 1111 123466778888999983 468999999999999999865
Q ss_pred CCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccCCceE-EEEecccCccc-ccccHHHHHHHH
Q psy15216 85 RGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTIL-VSVMLVNNEIG-VIQPILEIGELC 162 (2602)
Q Consensus 85 ~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~~tkl-v~i~~~~npTG-~~~~l~~I~~la 162 (2602)
+||+|+++.++|++....+..++..|++++.+ .|+++++++ +++|++ |++++|+|||| ...++++|.++|
T Consensus 97 ~gd~Vl~~~~~y~~~~~~~~~~~~~g~~~~~v-------~d~~~l~~~-~~~~~~~v~~~~p~nptG~~~~~l~~i~~l~ 168 (374)
T 2aeu_A 97 KPKKVIHYLPELPGHPSIERSCKIVNAKYFES-------DKVGEILNK-IDKDTLVIITGSTMDLKVIELENFKKVINTA 168 (374)
T ss_dssp CCSEEEEECSSSSCCTHHHHHHHHTTCEEEEE-------SCHHHHHTT-CCTTEEEEEECBCTTSCBCCHHHHHHHHHHH
T ss_pred CCCEEEEecCCCCccHHHHHHHHHcCcEEEEe-------CCHHHHHhc-CCCccEEEEEccCCCCCCCCcccHHHHHHHH
Confidence 79999999999988766555556679999888 389999998 888999 99999999999 899999999999
Q ss_pred HhcCCEEEEecccccccc-cc-c--CCCCCccEEEeccccccCCCCcEEEEEecCCCCcccceecCCCccccccccCcch
Q psy15216 163 RSKGVIFHCDAAQAVGKI-DI-N--IQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLAT 238 (2602)
Q Consensus 163 ~~~g~~livD~a~a~g~~-~~-d--l~~~~~D~~~~S~~K~~Gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~ 238 (2602)
++||+++|+|++|+.+.. +. . ...+++|++++|+||.++..++||+++++++++.+.+... ...++++.
T Consensus 169 ~~~~~~li~De~~~~~~~~~~~~~~~~~~~~di~~~S~sK~l~g~~~G~~~~~~~~~~~l~~~~~-------~~~~~~~~ 241 (374)
T 2aeu_A 169 KNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEGPRGGLLAGKKELVDKIYIEGT-------KFGLEAQP 241 (374)
T ss_dssp HHHTCCEEEECTTHHHHHHHTTCCCHHHHTCSEEEEETTSSSSSCSCEEEEEEHHHHHHHHHHHH-------TTTCBCCH
T ss_pred HHcCCEEEEECCcccccccccccCCccccCCcEEEecCcccccCcceEEEEECHHHHHHHHHhhc-------cccCCCCH
Confidence 999999999999876531 11 1 1124679999999996543468999999887777654331 11235666
Q ss_pred hHHHHHHHHHHHHHH-hHHHHHHHHHHH----HHHHHHHHhhcc---CceEEeCCCCCCCCceEEEEE-cccCh------
Q psy15216 239 HQIVGMGEAFRLARI-EMKEELKRILFL----QKRLYNGLMESI---EEIYINGDMNNRIPHNLNISF-NFIEG------ 303 (2602)
Q Consensus 239 ~~~~al~~al~~~~~-~~~~~~~~~~~l----~~~l~~~L~~~~---~g~~l~~~~~~~~~~~~~~~~-~~~~~------ 303 (2602)
....++.++++.... .+....+..+.+ ++.+.+.|.. + +|+.+..++ ..+.+.. ...+.
T Consensus 242 ~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~g~~~~~~~-----~g~~~~~~~~~~~~~~~~~ 315 (374)
T 2aeu_A 242 PLLAGIYRALKNFNLERIRKAFERAKNFDLSKIEKLNKELKA-IDDNINIVYERTP-----TGFVIKRVYKDDTINIKKL 315 (374)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHTT-TCTTEEEEEEECS-----SEEEEEEEESSHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhhccCcceeeCC-----ceEEEEeecccccccccch
Confidence 677777777763211 223333333333 4555555543 2 355543222 2222222 21111
Q ss_pred hHHHHH-h--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCC-CCCHHHHHHHHHHHHhh
Q psy15216 304 ESLLMA-I--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGR-FTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 304 ~~~~~~-L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~-~~t~edid~li~~L~~~ 369 (2602)
.++... + +||.+++|..+.. ..+++||+++. ..++.++++++++|++.
T Consensus 316 ~~~~~~ll~~~gV~v~~g~~~~~------------------~~~~lRi~~~~~~~~~~~l~~l~~~l~~~ 367 (374)
T 2aeu_A 316 IEIGFNLLKNYGIITITVAGMPG------------------ASKSLRIDLTSRDAERIDDNYIIKAIVES 367 (374)
T ss_dssp HHHHHHHHHHHCEECSTTSSSCS------------------SCCSEEEETTSGGGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCEEEecCCCCCC------------------CCCeEEEEcCCchHHHHHHHHHHHHHHHH
Confidence 113322 2 5999998765421 13689999974 22333588998888763
|
| >2op6_A Heat shock 70 kDa protein D; HSP70/peptide-binding domain, structural genomics, APC90014. 2, protein structure initiative; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.82 E-value=7.6e-20 Score=200.85 Aligned_cols=125 Identities=39% Similarity=0.638 Sum_probs=120.0
Q ss_pred eeccccccceEEeeccEEEEEEecCCcCCCCcEEEEEeecccccceeEEEeecCcccccCCceeEEEEeeCCCCCCCCcc
Q psy15216 2406 LLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRA 2485 (2602)
Q Consensus 2406 ~~d~~~~~~gi~~~~~~~~~ii~k~t~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~~~~~~~g~~ 2485 (2602)
+.|++|++||+++.+|.|.+||+||++||++++..|++..|||+.+.|.||||++..+.+|..||+|.|+++||.|+|.+
T Consensus 2 v~Dv~p~slGi~~~~g~~~~li~rnt~iP~~k~~~f~t~~d~Q~~v~i~v~qGe~~~~~~n~~lg~~~l~gipp~p~G~~ 81 (152)
T 2op6_A 2 NADVNPLTLGIETVGGVMTKLIGRNTVIPTKKSQVFSTAADSQSAVSIVIYEGERPMVMDNHKLGNFDVTGIPPAPRGVP 81 (152)
T ss_dssp -CCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCCCEEEEEEESSCSBGGGSEEEEEEEECCCCCCCTTCS
T ss_pred ceEeecccEEEEEeCCEEEEEEeCCCcccEeEEEEEEeCCCCCcEEEEEEEEeCCccCccCCEeEEEEEECCCCCCCCCc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEEcCCccEEEEEEeecCCcEEEEEEecC-CCCChHHHhcc
Q psy15216 2486 RIKVTYQVDADGLLSIFAYEKISGKKKFITIKPF-YNMNLDEIKNG 2530 (2602)
Q Consensus 2486 ~i~v~f~id~~g~l~V~a~~~~tg~~~~~~i~~~-~~l~~~ei~~~ 2530 (2602)
+|+|+|+||.||+|+|+|.++.||++..++|... ++||++||++.
T Consensus 82 ~I~V~f~id~nGiL~V~a~d~~tg~~~~i~i~~~~~~ls~eei~~~ 127 (152)
T 2op6_A 82 QIEVTFEIDVNGILHVSAEDKGTGNKNKLTITNDHNRLSPEDIERM 127 (152)
T ss_dssp CEEEEEEECTTSCEEEEEEETTTCCEEEEEECSSSSCCCHHHHHHH
T ss_pred eEEEEEEECCCcEEEEEEEEecCCcEEEEEeeccccCCCHHHHHHH
Confidence 9999999999999999999999999999999887 67999999963
|
| >2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ... | Back alignment and structure |
|---|
Probab=99.82 E-value=2e-20 Score=244.50 Aligned_cols=317 Identities=15% Similarity=0.105 Sum_probs=214.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHh---C---CCCCcEEE--eCCHHHHHHH
Q psy15216 2 DYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI---Y---ADPREIIW--TSGATESNNL 73 (2602)
Q Consensus 2 d~a~~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~---g---~~~~~Iv~--t~g~T~al~~ 73 (2602)
|..+.+++++.+.+++.+.+... ..+ .|. ......++|+++++++ + +++++|++ |+|+++|+++
T Consensus 38 ~~~~~~~~~~~v~~a~~~~~~~~--~~~--~y~----~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~~~g~~~a~~~ 109 (396)
T 2q7w_A 38 DETGKTPVLTSVKKAEQYLLENE--TTK--NYL----GIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRV 109 (396)
T ss_dssp CTTSCCCCCHHHHHHHHHHHHHC--CCC--CCC----CTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHH
T ss_pred CCCCCccCcHHHHHHHHhhcCcc--ccc--CCC----CCCCCHHHHHHHHHHHhcCCCCccccccEEEEecccchhhHHH
Confidence 34445577899999998877541 100 011 1123467888899888 3 24788998 9999999999
Q ss_pred HHHhcccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccC--CCCccChHHHHhhccC---CceEEEEecccCc
Q psy15216 74 AIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK--NNGLITLSQLEEKICS---DTILVSVMLVNNE 148 (2602)
Q Consensus 74 ~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~--~~~~ld~e~l~~~i~~---~tklv~i~~~~np 148 (2602)
++.++. .+.+||+|+++.|.|+++...+... |++++.++.+ +++.+|++++++++++ +++++++++|+||
T Consensus 110 ~~~~~~--~~~~gd~Vl~~~p~y~~~~~~~~~~---g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~np 184 (396)
T 2q7w_A 110 AADFLA--KNTSVKRVWVSNPSWPNHKSVFNSA---GLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCCHNP 184 (396)
T ss_dssp HHHHHH--HHSCCCEEEEEESCCTHHHHHHHHT---TCEEEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTT
T ss_pred HHHHHH--HhCCCCEEEEcCCCchhHHHHHHHc---CCceEEEecccCCCCCcCHHHHHHHHHhCCCCCEEEEeCCCCCC
Confidence 998764 1258999999999999987766654 9999999875 5678999999999974 4789999999999
Q ss_pred ccccccH---HHHHHHHHhcCCEEEEecccccccc-------ccc-CCCC-CccEEEeccccccCCCC--cEEEEE---e
Q psy15216 149 IGVIQPI---LEIGELCRSKGVIFHCDAAQAVGKI-------DIN-IQNY-KVDLMSFSAHKIYGPKG--IGALYI---R 211 (2602)
Q Consensus 149 TG~~~~l---~~I~~la~~~g~~livD~a~a~g~~-------~~d-l~~~-~~D~~~~S~~K~~Gp~G--~G~l~~---~ 211 (2602)
||.++|. ++|+++|++||+++|+|++|+.... ++. +... +.++++.|+||.+|++| +||+++ +
T Consensus 185 tG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~ 264 (396)
T 2q7w_A 185 TGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSXNFGLYNERVGACTLVAAD 264 (396)
T ss_dssp TCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTTCGGGCCEEEEEECSS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCccchhHHHHHHHhcCCcEEEEEeccccccccccccceEEEEcCC
Confidence 9999874 5788999999999999999874321 111 1111 24588899999999888 699997 4
Q ss_pred cCCCCcccceecCCCccccccccCcchhHHHHHHHHHHHH------HHhHHHHHHHHHHHHHHHHHHHhhccC--ceEEe
Q psy15216 212 RNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLA------RIEMKEELKRILFLQKRLYNGLMESIE--EIYIN 283 (2602)
Q Consensus 212 ~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~------~~~~~~~~~~~~~l~~~l~~~L~~~~~--g~~l~ 283 (2602)
++.++.+...... ......++++..+..++.++|+.. ..++++..++++++++++.+.|.+..+ ++++.
T Consensus 265 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 341 (396)
T 2q7w_A 265 SETVDRAFSQMKA---AIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFI 341 (396)
T ss_dssp HHHHHHHHHHHHH---HHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTCCSCCTHH
T ss_pred HHHHHHHHHHHHH---HHhhccCCCCcHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccee
Confidence 4222222111100 001122345666666666666532 245677888889999999999987211 24433
Q ss_pred CCCCCCCCceEEEEEcccChhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHH
Q psy15216 284 GDMNNRIPHNLNISFNFIEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDF 361 (2602)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~ 361 (2602)
.+... . +.+...+...+...+ +||.+++ .+||+++.. +++++++
T Consensus 342 ~~~~~---~---~~~~~~~~~~~~~~l~~~gv~v~~---------------------------~~Ris~~~~-~~e~i~~ 387 (396)
T 2q7w_A 342 IKQNG---M---FSFSGLTKEQVLRLREEFGVYAVA---------------------------SGRVNVAGM-TPDNMAP 387 (396)
T ss_dssp HHCCS---S---EEECCCCHHHHHHHHHHHCEECCT---------------------------TCEEEGGGC-CTTTHHH
T ss_pred cCCCc---e---EEEecCCHHHHHHHHHhcCeeecC---------------------------CceEEEeec-CHHHHHH
Confidence 22211 1 222223333333333 5887752 269999854 8899999
Q ss_pred HHHHHHh
Q psy15216 362 TIKLLKM 368 (2602)
Q Consensus 362 li~~L~~ 368 (2602)
++++|++
T Consensus 388 ~~~~l~~ 394 (396)
T 2q7w_A 388 LCEAIVA 394 (396)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999985
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=7.8e-22 Score=257.25 Aligned_cols=315 Identities=15% Similarity=0.156 Sum_probs=225.0
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHH----hC--CCCCcEEEeCCHHHHHHHHHHhcccc
Q psy15216 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQL----IY--ADPREIIWTSGATESNNLAIKGAAHF 81 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~----~g--~~~~~Iv~t~g~T~al~~~~~~l~~~ 81 (2602)
++|+.+.+++.+.+... .+.+... ..++|+.++++ +| +++++|++++|+++|+.+++.++.
T Consensus 44 ~~~~~v~~a~~~~~~~~-------~~~y~~~----~~~l~~~la~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~-- 110 (392)
T 3b1d_A 44 EVMPEVKQAIHDYAEQL-------VYGYTYA----SDELLQAVLDWEKSEHQYSFDKEDIVFVEGVVPAISIAIQAFT-- 110 (392)
Confidence 56778888888877431 0111111 34455555554 45 567899999999999999999987
Q ss_pred cccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCC---CCccChHHHHhhcc-CCceEEEEecccCccccccc---
Q psy15216 82 YKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN---NGLITLSQLEEKIC-SDTILVSVMLVNNEIGVIQP--- 154 (2602)
Q Consensus 82 ~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~---~~~ld~e~l~~~i~-~~tklv~i~~~~npTG~~~~--- 154 (2602)
++||+|+++.+.|+++...+... |++++.++.++ ++.+|+++++++++ ++++++++++|+||||.++|
T Consensus 111 --~~gd~vl~~~p~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~ 185 (392)
T 3b1d_A 111 --KEGEAVLINSPVYPPFARSVRLN---NRKLVSNSLKEENGLFQIDFEQLENDIVENDVKLYLLCNPHNPGGRVWEREV 185 (392)
Confidence 78999999999999988776655 88888888753 24589999999997 78999999999999999987
Q ss_pred HHHHHHHHHhcCCEEEEecccccccc----cccC---CC--CCccEEEeccccccCCCC--cEEEEEecC-CCCccccee
Q psy15216 155 ILEIGELCRSKGVIFHCDAAQAVGKI----DINI---QN--YKVDLMSFSAHKIYGPKG--IGALYIRRN-PRTRIEAQI 222 (2602)
Q Consensus 155 l~~I~~la~~~g~~livD~a~a~g~~----~~dl---~~--~~~D~~~~S~~K~~Gp~G--~G~l~~~~~-~~~~l~~~~ 222 (2602)
+++|.++|++||+++|+|++|+.... ...+ .. .+.++++.|+||.+|++| +||++++++ +++.+....
T Consensus 186 l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~ 265 (392)
T 3b1d_A 186 LEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTVSPDFKDFALVLSSATKTFNIAGTKNSYAIIENPTLCAQFKHQQ 265 (392)
Confidence 88899999999999999999975321 1122 11 345688899999888776 799998754 777776443
Q ss_pred cCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc--
Q psy15216 223 HGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-- 300 (2602)
Q Consensus 223 ~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~-- 300 (2602)
.. +..++++.+...++.++|+....++++.++++.++++++.+.|.+.+|++.+..+... ...++.++.
T Consensus 266 ~~------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~---~~~~i~~~~~~ 336 (392)
T 3b1d_A 266 LV------NNHHEVSSLGYIATETAYRYGKPWLVALKAVLEENIQFAVEYFAQEAPRLKVMKPQGT---YLIWLDFSDYG 336 (392)
Confidence 21 1123456666666667776434567788888888999999888663467766544322 112233432
Q ss_pred cChhHHHHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 301 IEGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 301 ~~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
.+..++...| +||.+++|..|.+. ..+++||+++. +++++++++++|++
T Consensus 337 ~~~~~l~~~l~~~~gi~v~~g~~f~~~-----------------~~~~iRi~~~~--~~e~i~~~l~~l~~ 388 (392)
T 3b1d_A 337 LTDDALFTLLHDQAKVILNRGSDYGSE-----------------GELHARLNIAA--PKSLVEEICKRIVC 388 (392)
Confidence 2445566555 48999888765421 13789999875 67899999999885
|
| >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.2e-18 Score=225.92 Aligned_cols=303 Identities=17% Similarity=0.229 Sum_probs=211.6
Q ss_pred CCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhc---cC
Q psy15216 1405 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYK---KR 1481 (2602)
Q Consensus 1405 ~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~---~~ 1481 (2602)
.++.+.+++.+.++.. +++.. .|. .....++++++++++|+ ++++++|+|+|+|+.+++.++. ... ++
T Consensus 45 ~~~~v~~a~~~~~~~~-~~~~~-~y~-----~~~~~~l~~~la~~~g~-~~~v~~~~g~t~a~~~~~~~~~-~~~~~~~~ 115 (375)
T 2eh6_A 45 AYPKLTEALKEQVEKL-LHVSN-LYE-----NPWQEELAHKLVKHFWT-EGKVFFANSGTESVEAAIKLAR-KYWRDKGK 115 (375)
T ss_dssp SCHHHHHHHHHHHHHC-SCCCT-TBC-----CHHHHHHHHHHHHTSSS-CEEEEEESSHHHHHHHHHHHHH-HHHHHTTC
T ss_pred CCHHHHHHHHHHHHhc-cccCc-ccC-----CHHHHHHHHHHHhhcCC-CCeEEEeCchHHHHHHHHHHHH-HHhccCCC
Confidence 6788999999988653 23322 121 12457889999999998 4789999999999999988641 112 57
Q ss_pred C-CEEEEcCCCCcchHHHHHHHHhC-----CcE-----EEEeccCCCCCcChhHHHhhccCCceEEEEeccccccccccC
Q psy15216 1482 G-KHIITVQTEHKSVLDSIRKLEND-----GFR-----VTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP 1550 (2602)
Q Consensus 1482 g-d~Vlv~~~~~~s~~~~~~~~~~~-----G~~-----v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~ 1550 (2602)
| |+|++++++|+++...+..+... |.. +..++. .|+++|++++++++++|++++++||||.+.|
T Consensus 116 g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~l~~~~~~v~~~~~~~~tG~~~~ 190 (375)
T 2eh6_A 116 NKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYAKL-----NDIDSVYKLLDEETAGIIIEVIQGEGGVNEA 190 (375)
T ss_dssp CCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCCSSEEEECT-----TCHHHHHTTCCTTEEEEEECSEETTTTSEEC
T ss_pred CCCEEEEECCCcCCCchhhhhhcCCccccCCCCCCCCCceeCCC-----chHHHHHHHhcCCeEEEEEeCccCCCCCcCC
Confidence 8 99999999988876655444111 111 333332 5899999999999999999999999999988
Q ss_pred ----hHHHHHHhhhcCCEEEEecccc-cCccc--ccCCCCC--ccEEEEcccccc-CCCceEEEEEecCCCCcccccccc
Q psy15216 1551 ----ILEIGELCRSKGVIFHCDAAQA-VGKID--INIQNYK--VDLMSFSAHKIY-GPKGIGALYIRRNPRTRIEAQIHG 1620 (2602)
Q Consensus 1551 ----l~~I~~ia~~~gi~vivD~a~~-~g~~~--~~l~~~~--~D~~v~S~~K~~-gp~G~G~l~~~~~~~~~l~~~~~g 1620 (2602)
+++|.++|++||+++|+|++|+ ++... +++..++ +|++++| |.+ ++.++|++++++++++.+.+...+
T Consensus 191 ~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~d~~s~S--K~~~~g~~~G~~~~~~~~~~~~~~~~~~ 268 (375)
T 2eh6_A 191 SEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAYQHFNLKPDVIALA--KGLGGGVPIGAILAREEVAQSFTPGSHG 268 (375)
T ss_dssp CHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEEC--GGGGTTSCCEEEEEEHHHHTTCCTTSCC
T ss_pred CHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcchhhhhcCCCCCEEEEc--ccccCCCCeEEEEEcHHHHhhhcCCCCC
Confidence 9999999999999999999998 55432 2333444 7887544 844 445589999998776666542211
Q ss_pred CCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecCCcH
Q psy15216 1621 GGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGE 1700 (2602)
Q Consensus 1621 ~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~ 1700 (2602)
...++ +...+.++.++|+... +..++.+++++++.+.|.+ ++.....+ ......+.++. +..
T Consensus 269 ------~~~~~-~~~~~~~~~~~l~~~~----~~~~~~~~~~~~l~~~L~~-~~~~~~~~-----~g~~~~~~~~~-~~~ 330 (375)
T 2eh6_A 269 ------STFGG-NPLACRAGTVVVDEVE----KLLPHVREVGNYFKEKLKE-LGKGKVKG-----RGLMLGLELER-ECK 330 (375)
T ss_dssp ------CSSTT-CHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH-TTSSEEEE-----ETTEEEEECSS-CCH
T ss_pred ------CCCCC-CHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH-HhcCCceE-----EEEEEEEEEcC-cHH
Confidence 11233 3444444446666433 6677888889999999987 43311111 12233333332 455
Q ss_pred HHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1701 SLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1701 ~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
++...| +||.++++. .+++|++++..++.+++++++++|++
T Consensus 331 ~~~~~l~~~gi~~~~~~-----------------------~~~iRi~~~~~~~~~~i~~~~~~l~~ 373 (375)
T 2eh6_A 331 DYVLKALEKGLLINCTA-----------------------GKVLRFLPPLIIQKEHIDRAISVLRE 373 (375)
T ss_dssp HHHHHHHHTTEECEEET-----------------------TTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCEEecCC-----------------------CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 666655 789887541 17899999988999999999999986
|
| >1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.6e-20 Score=246.76 Aligned_cols=315 Identities=13% Similarity=0.053 Sum_probs=216.3
Q ss_pred CCCCCCCCCCHHHHHHHHH-HHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHh-C-----CCCCcEEE--eCCHHHHH
Q psy15216 1 MDYSATTPIDPRVVDKMIP-YLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI-Y-----ADPREIIW--TSGATESN 71 (2602)
Q Consensus 1 Ld~a~~~~~p~~v~~a~~~-~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~-g-----~~~~~Iv~--t~g~T~al 71 (2602)
||+++.+++++.+.+++.+ .+... ..+ .|. ......++|+.+++++ + +++++|++ |+|+++|+
T Consensus 40 ~d~~~~~~~~~~v~~a~~~~~~~~~--~~~--~y~----~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~t~g~~~a~ 111 (412)
T 1yaa_A 40 RDDNGKPWVLPSVKAAEKLIHNDSS--YNH--EYL----GITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGAL 111 (412)
T ss_dssp BCTTSCBCCCHHHHHHHHHHHTCTT--CCC--CCC----CTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHH
T ss_pred eCCCCCCCCcHHHHHHHHhhhcCcc--ccc--CCC----CCCCcHHHHHHHHHHHhcCCCCCCCcceEEEEeccchHhHH
Confidence 3566667888999999998 76421 000 011 1112467888888887 3 25789999 99999999
Q ss_pred HHHHHhcccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEecc-CC-CCccChHHHHhhccCC---ceEEEEeccc
Q psy15216 72 NLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP-KN-NGLITLSQLEEKICSD---TILVSVMLVN 146 (2602)
Q Consensus 72 ~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~-~~-~~~ld~e~l~~~i~~~---tklv~i~~~~ 146 (2602)
++++..+. .+.+||+|+++.|.|+++...+.. .|++++.++. ++ ++.+|+++|+++++++ +.++++++|+
T Consensus 112 ~~~~~~~~--~~~~gd~Vl~~~p~~~~~~~~~~~---~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~p~ 186 (412)
T 1yaa_A 112 HISAKFFS--KFFPDKLVYLSKPTWANHMAIFEN---QGLKTATYPYWANETKSLDLNGFLNAIQKAPEGSIFVLHSCAH 186 (412)
T ss_dssp HHHHHHHH--HHCTTCCEEEEESCCTTHHHHHHT---TTCCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEECSSC
T ss_pred HHHHHHHH--HhCCCCEEEEeCCCCccHHHHHHH---cCceEEEEeeecCCCCccCHHHHHHHHHhCCCCCEEEEeCCCC
Confidence 99854332 125899999999999998766654 4999999987 43 6779999999998643 4566669999
Q ss_pred Cccccccc---HHHHHHHHHhcCCEEEEeccccccc--------ccc-cCCCCC----ccEEEeccccccCCCC--cEEE
Q psy15216 147 NEIGVIQP---ILEIGELCRSKGVIFHCDAAQAVGK--------IDI-NIQNYK----VDLMSFSAHKIYGPKG--IGAL 208 (2602)
Q Consensus 147 npTG~~~~---l~~I~~la~~~g~~livD~a~a~g~--------~~~-dl~~~~----~D~~~~S~~K~~Gp~G--~G~l 208 (2602)
||||.++| +++|+++|++||+++|+|++|+... .++ ++...+ .++++.|+||.+|++| +||+
T Consensus 187 nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~GlriG~~ 266 (412)
T 1yaa_A 187 NPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYGERVGCF 266 (412)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTSCCGGGCEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHhcCCCCcceEEEeccCCCCCCcCCcceEE
Confidence 99999987 5568888999999999999985321 122 222222 3578889999999988 6999
Q ss_pred E--E-----ecC----CCCcccceecCCCccccccccCcchhHHHHHHHHHHHH------HHhHHHHHHHHHHHHHHHHH
Q psy15216 209 Y--I-----RRN----PRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLA------RIEMKEELKRILFLQKRLYN 271 (2602)
Q Consensus 209 ~--~-----~~~----~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~------~~~~~~~~~~~~~l~~~l~~ 271 (2602)
+ + +++ +++.+.... ....++++.....++.++|+.. ..++++.+++++++++++.+
T Consensus 267 ~~~~~~~~~~~~~~~~l~~~l~~~~-------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 339 (412)
T 1yaa_A 267 HLALTKQAQNKTIKPAVTSQLAKII-------RSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRD 339 (412)
T ss_dssp EEECCSCTTHHHHHHHHHHHHHHHH-------HTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHH-------hhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8 6 444 444443311 1122355666677777777632 24678889999999999999
Q ss_pred HHhhccC--ceEEeCCCCCCCCceEEEEEcccChhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEE
Q psy15216 272 GLMESIE--EIYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIR 347 (2602)
Q Consensus 272 ~L~~~~~--g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iR 347 (2602)
.|.+..+ ++.+..+... .+.+...+...+...+ +||.+++ ++|
T Consensus 340 ~L~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~gi~v~~---------------------------~~R 386 (412)
T 1yaa_A 340 HLVKLGTPGNWDHIVNQCG------MFSFTGLTPQMVKRLEETHAVYLVA---------------------------SGR 386 (412)
T ss_dssp HHHHHTCSSCCTHHHHCCS------SEEECCCCHHHHHHHHHHHCEECCT---------------------------TSE
T ss_pred HHHhhCCCCCeeeeccCce------EEEeeCCCHHHHHHHHHhCCEEecc---------------------------CcE
Confidence 9987211 2444332211 1223333444443333 5787752 379
Q ss_pred EecCCCCCHHHHHHHHHHHHhh
Q psy15216 348 FTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 348 is~~~~~t~edid~li~~L~~~ 369 (2602)
|+++. .+++++++++++|++.
T Consensus 387 is~~~-~~~~~i~~~~~~l~~~ 407 (412)
T 1yaa_A 387 ASIAG-LNQGNVEYVAKAIDEV 407 (412)
T ss_dssp EEGGG-CCTTTHHHHHHHHHHH
T ss_pred EEEcc-CCHhHHHHHHHHHHHH
Confidence 99984 5899999999999864
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=4.5e-19 Score=231.55 Aligned_cols=306 Identities=13% Similarity=0.117 Sum_probs=216.6
Q ss_pred CCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCC
Q psy15216 7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRG 86 (2602)
Q Consensus 7 ~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~g 86 (2602)
+++|+.+.+++.+.+.... +... .+ ..+..++++++++++++++++++++++|+++|+++++.++.. +.+|
T Consensus 60 g~~~~~v~~a~~~~~~~~~-~~~~-~~-----~~~~~~~l~~~la~~~~~~~~~v~~~~gg~~a~~~al~~~~~--~~~~ 130 (395)
T 1vef_A 60 GHGNPEVVEAVKRQAETLM-AMPQ-TL-----PTPMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARA--HTGR 130 (395)
T ss_dssp CBTCHHHHHHHHHHHHHCC-CCCT-TS-----CCHHHHHHHHHHHHTSCTTEEEEEEESSHHHHHHHHHHHHHH--HHSC
T ss_pred CCCCHHHHHHHHHHHHhCC-CCcc-cc-----CCHHHHHHHHHHHHhcCCCcCEEEEcCcHHHHHHHHHHHHHH--HhCC
Confidence 4588999999999987532 2111 11 234678999999999988778999999999999999987631 2478
Q ss_pred CEEEEcCCCCcccH-HHHHHHHhCCcE------------EEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccc
Q psy15216 87 KHIITVQTEHKSVL-DSIRKLENDGFR------------VTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQ 153 (2602)
Q Consensus 87 d~Vlv~~~~~~s~~-~~~~~~~~~G~~------------v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~ 153 (2602)
|+|+++++.|++.. .++... |.+ +..++ ..|+++|++++++++++|++++++||||.+.
T Consensus 131 ~~vi~~~~~y~~~~~~~~~~~---g~~~~~~~~~p~~~~~~~~~-----~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~ 202 (395)
T 1vef_A 131 KKFVAAMRGFSGRTMGSLSVT---WEPKYREPFLPLVEPVEFIP-----YNDVEALKRAVDEETAAVILEPVQGEGGVRP 202 (395)
T ss_dssp CEEEEETTCCCCSSHHHHHTC---CCHHHHGGGCSCSSCEEEEC-----TTCHHHHHHHCCTTEEEEEECSEETTTTSEE
T ss_pred CeEEEEcCCcCCCchhhhhhc---CCcccccccCCCCCCeeEeC-----CCcHHHHHHHhccCEEEEEEeCccCCCCccC
Confidence 89999999887643 344332 433 23332 2489999999999999999988899999998
Q ss_pred c----HHHHHHHHHhcCCEEEEecccc-cccc----cccCCCCCccEEEeccccccCC-CCcEEEEEecCCCCcccceec
Q psy15216 154 P----ILEIGELCRSKGVIFHCDAAQA-VGKI----DINIQNYKVDLMSFSAHKIYGP-KGIGALYIRRNPRTRIEAQIH 223 (2602)
Q Consensus 154 ~----l~~I~~la~~~g~~livD~a~a-~g~~----~~dl~~~~~D~~~~S~~K~~Gp-~G~G~l~~~~~~~~~l~~~~~ 223 (2602)
| +++|.++|++||+++|+|++|+ ++.. +++.....+|++ |+||.+++ .++|++++++++++.+.+..
T Consensus 203 ~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~g~~~G~~~~~~~~~~~l~~~~- 279 (395)
T 1vef_A 203 ATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPDIL--TLAKALGGGVPLGVAVMREEVARSMPKGG- 279 (395)
T ss_dssp CCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEE--EECGGGGTTSSCEEEEEEHHHHHTSCTTS-
T ss_pred CCHHHHHHHHHHHHHcCCEEEEEecccCCccCCchhHhhhcCCCCCEE--EEcccccCCCceEEEEehHHHHhhhccCC-
Confidence 8 9999999999999999999998 3211 122233456866 77996653 45899999987666554311
Q ss_pred CCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCc--eEEeCCCCCCCCceEEEEEccc
Q psy15216 224 GGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEE--IYINGDMNNRIPHNLNISFNFI 301 (2602)
Q Consensus 224 g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g--~~l~~~~~~~~~~~~~~~~~~~ 301 (2602)
.....+++..+.+++.++++.... ++..++..++++++.+.|.+ ++. +... ++ ...++.+.++.
T Consensus 280 ------~~~~~~~~~~~~~a~~~al~~~~~--~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~-~~---~g~~~~~~~~~- 345 (395)
T 1vef_A 280 ------HGTTFGGNPLAMAAGVAAIRYLER--TRLWERAAELGPWFMEKLRA-IPSPKIREV-RG---MGLMVGLELKE- 345 (395)
T ss_dssp ------SCCSSTTCHHHHHHHHHHHHHHHH--HTTHHHHHHHHHHHHHHHHT-SCCTTEEEE-EE---ETTEEEEEESS-
T ss_pred ------cCCCcCCCHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHH-hhcCceEEE-EE---EEEEEEEEEcC-
Confidence 111235677777777788875443 45678888899999999976 322 1111 11 12344455543
Q ss_pred ChhHHHHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 302 EGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 302 ~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
+..++...| +||.++++. .+++||+++.+++++|+++++++|++.
T Consensus 346 ~~~~l~~~l~~~~gi~v~~~~-----------------------~~~iRi~~~~~~~~~~i~~~~~~l~~~ 393 (395)
T 1vef_A 346 KAAPYIARLEKEHRVLALQAG-----------------------PTVIRFLPPLVIEKEDLERVVEAVRAV 393 (395)
T ss_dssp CSHHHHHHHHHHHCEECEESS-----------------------TTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCeEEecCC-----------------------CCEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 355565555 488887541 278999999899999999999999853
|
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=5.7e-20 Score=238.74 Aligned_cols=279 Identities=14% Similarity=0.112 Sum_probs=198.9
Q ss_pred HHHHHHHHHHhCC-----CC-CcEEEeCCHHHHHHHHHHhcccccccCCC----EEEEcCCCCcccHHHHHHHHhCCcEE
Q psy15216 44 EKARNEVAQLIYA-----DP-REIIWTSGATESNNLAIKGAAHFYKKRGK----HIITVQTEHKSVLDSIRKLENDGFRV 113 (2602)
Q Consensus 44 ~~~r~~lA~~~g~-----~~-~~Iv~t~g~T~al~~~~~~l~~~~~~~gd----~Vlv~~~~~~s~~~~~~~~~~~G~~v 113 (2602)
.++|+++|++++. .+ ++|++|+|+++|+++++.++. ++|| +|++++|.|+++...++.. |+++
T Consensus 71 ~~lr~aia~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~l~----~~Gd~~~~~Vlv~~P~y~~~~~~~~~~---g~~~ 143 (391)
T 3bwn_A 71 PELEDAIKDLHGVVGNAATEDRYIVVGTGSTQLCQAAVHALS----SLARSQPVSVVAAAPFYSTYVEETTYV---RSGM 143 (391)
T ss_dssp HHHHHHHHHHHHHHCSBCCSSSEEEEEEHHHHHHHHHHHHHH----HTSSSSSEEEEECSSCCTHHHHHHHTT---CBTT
T ss_pred HHHHHHHHHHHHhcCCCCCCCCeEEEeCChHHHHHHHHHHhc----CCCCCCcceEEEcCCCchhHHHHHHHc---CCeE
Confidence 6788888888762 34 589999999999999999997 7999 9999999999987766544 8888
Q ss_pred EEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHhcCCEEEEeccccccc-ccccCCCCCccEE
Q psy15216 114 TYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGK-IDINIQNYKVDLM 192 (2602)
Q Consensus 114 ~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~~g~~livD~a~a~g~-~~~dl~~~~~D~~ 192 (2602)
+.++++.++ ++ .+++++|++++||||||.+++ +|++.++.+++++|+|++|+.+. .++.. ..+.+++
T Consensus 144 ~~~~~d~~~------l~---~~~~k~v~l~~p~NPtG~~~~--~l~~~~~~~~~~ii~De~y~~~~~~~l~~-~~~~~i~ 211 (391)
T 3bwn_A 144 YKWEGDAWG------FD---KKGPYIELVTSPNNPDGTIRE--TVVNRPDDDEAKVIHDFAYYWPHYTPITR-RQDHDIM 211 (391)
T ss_dssp EEEEEESTT------CC---CCSCEEEEEESSCTTTCCCCC--CCC-----CCCEEEEECTTCSTTTSCCCC-CBCCSEE
T ss_pred EEecCCHHH------cC---CCCCEEEEECCCCCCCchhHH--HHHHHhhcCCCEEEEeCCCCCCCCCcccc-CCCCeEE
Confidence 888765432 22 367999999999999999997 45442222339999999998543 22322 3456899
Q ss_pred EeccccccCCCC--cEEEEE-ecCCCCcccceecCCCccccccccCcchhHHHHHHHHHHHH----------HHhHHHHH
Q psy15216 193 SFSAHKIYGPKG--IGALYI-RRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLA----------RIEMKEEL 259 (2602)
Q Consensus 193 ~~S~~K~~Gp~G--~G~l~~-~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~----------~~~~~~~~ 259 (2602)
+.|+||.+|++| +||+++ ++++++.+..... ...++++.+...++..+|+.. ..++++.+
T Consensus 212 ~~S~SK~~g~~GlRiG~~~~~~~~l~~~l~~~~~-------~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~ 284 (391)
T 3bwn_A 212 LFTFSKITGHAGSRIGWALVKDKEVAKKMVEYII-------VNSIGVSKESQVRTAKILNVLKETCKSESESENFFKYGR 284 (391)
T ss_dssp EEEHHHHHSCGGGCEEEEEECCHHHHHHHHHHHH-------HHHSSCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHH
T ss_pred EEechhhcCCCccceEEEEecCHHHHHHHHHHhc-------ccccCCCHHHHHHHHHHHhCcchhccccccHHHHHHHHH
Confidence 999999999999 599998 7666666654321 113456666666676777743 34578889
Q ss_pred HHHHHHHHHHHHHHhhccCceEEeCCCCCC--------CCceEEEEEcccChhHHHHHh--CCeEEcccccCCCCCCChH
Q psy15216 260 KRILFLQKRLYNGLMESIEEIYINGDMNNR--------IPHNLNISFNFIEGESLLMAI--KDIAVSSGSACTSASLEPS 329 (2602)
Q Consensus 260 ~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~--------~~~~~~~~~~~~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~ 329 (2602)
++++++++++.+.|.+ ++++.+..+.... .+.+.++++...+...+...| +||.+++|..|..
T Consensus 285 ~~~~~~~~~l~~~L~~-~~~~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~~~~~~~~l~~~gV~v~pg~~fg~------ 357 (391)
T 3bwn_A 285 EMMKNRWEKLREVVKE-SDAFTLPKYPEAFCNYFGKSLESYPAFAWLGTKEETDLVSELRRHKVMSRAGERCGS------ 357 (391)
T ss_dssp HHHHHHHHHHHHHHHT-CSSEECCCCCCEEETTTTEEECCCCSEEEEEESSSCCHHHHHHHTTEECEEGGGGTC------
T ss_pred HHHHHHHHHHHHHHHh-CCCcccccCCccccccccccCCCcceEEEecCCcHHHHHHHHHHCCEEEccCCCCCC------
Confidence 9999999999999988 5777765432211 011112333222223333333 7999999987742
Q ss_pred HHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 330 YVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 330 ~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
..+++|||++ ++++++++++++|++.
T Consensus 358 ------------~~~~iRis~~--~~~e~i~~~~~~L~~~ 383 (391)
T 3bwn_A 358 ------------DKKHVRVSML--SREDVFNVFLERLANM 383 (391)
T ss_dssp ------------CTTEEEEESC--SCHHHHHHHHHHHHSC
T ss_pred ------------CCCEEEEEec--CCHHHHHHHHHHHHHH
Confidence 1379999998 3889999999999863
|
| >1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-18 Score=230.06 Aligned_cols=320 Identities=8% Similarity=0.010 Sum_probs=217.1
Q ss_pred CCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhccccccc----
Q psy15216 9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKK---- 84 (2602)
Q Consensus 9 ~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~---- 84 (2602)
.++.+.+++.+.+.....++.. .+. .+...++++++++++++++++|+|++|+++|+++++.++.. +.+
T Consensus 60 ~~p~v~~a~~~~~~~~~~~~~~-~~~-----~~~~~~l~~~la~~~~~~~~~v~~~~ggtea~~~ai~~~~~-~~~~~g~ 132 (429)
T 1s0a_A 60 NHPQLNAAMKSQIDAMSHVMFG-GIT-----HAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQ-YWQAKGE 132 (429)
T ss_dssp SCHHHHHHHHHHHHHCSCCCCS-SEE-----CHHHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHH-HHHHHTC
T ss_pred CCHHHHHHHHHHHHhccccccc-ccC-----CHHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHH-HhcccCC
Confidence 6899999999998764332211 111 12457788899999998888999999999999999987541 112
Q ss_pred CCCEEEEcCCCCcccHHHHHHHHh--------C---CcEEEEeccCC------CCccChHHHHhhcc---CCceEEEEec
Q psy15216 85 RGKHIITVQTEHKSVLDSIRKLEN--------D---GFRVTYLKPKN------NGLITLSQLEEKIC---SDTILVSVML 144 (2602)
Q Consensus 85 ~gd~Vlv~~~~~~s~~~~~~~~~~--------~---G~~v~~v~~~~------~~~ld~e~l~~~i~---~~tklv~i~~ 144 (2602)
||++|+++++.|+.+...+..+.. . ...++.++.+. .+.+|+++|+++++ +++++|+++.
T Consensus 133 ~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~vi~~p 212 (429)
T 1s0a_A 133 ARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEP 212 (429)
T ss_dssp CCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHTTTEEEEEECS
T ss_pred CCCeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeCCCcccccccchHHHHHHHHHHHHhCCCCEEEEEEee
Confidence 689999999988876443322200 0 01244454431 23589999999997 5677777776
Q ss_pred c-cCccccccc----HHHHHHHHHhcCCEEEEecccc-cccc----cccCCCCCccEEEeccccccC-C-CCcEEEEEec
Q psy15216 145 V-NNEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKI----DINIQNYKVDLMSFSAHKIYG-P-KGIGALYIRR 212 (2602)
Q Consensus 145 ~-~npTG~~~~----l~~I~~la~~~g~~livD~a~a-~g~~----~~dl~~~~~D~~~~S~~K~~G-p-~G~G~l~~~~ 212 (2602)
+ +||||.+.| +++|.++|++||+++|+|++|+ ++.. .++.....+|++ |++|.+| + .++|++++++
T Consensus 213 ~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g~~g~~~~~~~~~~~~d~~--t~sK~l~~G~~~iG~~~~~~ 290 (429)
T 1s0a_A 213 IVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPDIL--CLGKALTGGTMTLSATLTTR 290 (429)
T ss_dssp SEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGTSSSCCEEEEECH
T ss_pred cccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCcccchHHHhhhcCCCCCEE--EecccccCCCccceEEEeCH
Confidence 6 799998887 9999999999999999999997 4422 122223456776 4669554 3 4689999988
Q ss_pred CCCCcccceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhc--cCceEEeCCCCCCC
Q psy15216 213 NPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMES--IEEIYINGDMNNRI 290 (2602)
Q Consensus 213 ~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~--~~g~~l~~~~~~~~ 290 (2602)
++++.+.+...++. ......+.+.++++++.++++.... +...++..++++++.++|.+. .+++....+.
T Consensus 291 ~~~~~l~~~~~~~~--~~~~t~~~n~~~~~a~~aal~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~---- 362 (429)
T 1s0a_A 291 EVAETISNGEAGCF--MHGPTFMGNPLACAAANASLAILES--GDWQQQVADIEVQLREQLAPARDAEMVADVRVL---- 362 (429)
T ss_dssp HHHHHHHTSTTSSC--SCCCTTTTCHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHGGGGGCTTEEEEEEE----
T ss_pred HHHHHhhcCCCccc--ccCCCCCCCHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHHHhcCCCEEEEEEe----
Confidence 76655543100000 0011234577778788788885543 356677888889999998762 2455432221
Q ss_pred CceEEEEEcc-cChhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHH
Q psy15216 291 PHNLNISFNF-IEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK 367 (2602)
Q Consensus 291 ~~~~~~~~~~-~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~ 367 (2602)
..+..+.++. .+..++...| +||.+++. .+++||+++..++++|+++++++|+
T Consensus 363 g~~~~~~~~~~~~~~~l~~~l~~~Gi~v~~~------------------------~~~iRis~~~~~t~e~i~~~~~~l~ 418 (429)
T 1s0a_A 363 GAIGVVETTHPVNMAALQKFFVEQGVWIRPF------------------------GKLIYLMPPYIILPQQLQRLTAAVN 418 (429)
T ss_dssp TTEEEEEESSCBCHHHHHHHHHHTTEECCCB------------------------TTEEEECCCTTCCHHHHHHHHHHHH
T ss_pred eEEEEEEECCcccHHHHHHHHHHCCCEEecc------------------------CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 2234455543 3556666666 78888642 1689999999999999999999998
Q ss_pred hh
Q psy15216 368 MK 369 (2602)
Q Consensus 368 ~~ 369 (2602)
+.
T Consensus 419 ~~ 420 (429)
T 1s0a_A 419 RA 420 (429)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.81 E-value=2.4e-18 Score=224.43 Aligned_cols=308 Identities=16% Similarity=0.168 Sum_probs=217.6
Q ss_pred CCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhh------
Q psy15216 1405 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFY------ 1478 (2602)
Q Consensus 1405 ~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~------ 1478 (2602)
.++.+.+++.+.++.....+.. + ......++++++++++| ++++++++|+|+|++.++..+....
T Consensus 53 ~~p~v~~a~~~~~~~~~~~~~~--~-----~~~~~~~l~~~la~~~g--~~~v~~~~~gt~a~~~al~~~~~~~~~~~~~ 123 (392)
T 3ruy_A 53 RHPKIINALIDQANRVTLTSRA--F-----HSDQLGPWYEKVAKLTN--KEMVLPMNTGAEAVETAIKTARRWAYDVKKV 123 (392)
T ss_dssp TCHHHHHHHHHHHTTCSCCCTT--S-----EETTHHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHHHHHHHHHHTSCC
T ss_pred CCHHHHHHHHHHHHhccccccc--c-----CCHHHHHHHHHHHHhcC--CCEEEEeCcHHHHHHHHHHHHHHhhhhccCC
Confidence 4789999999988653221111 1 12346789999999998 6699999999999999999775210
Q ss_pred ccCCCEEEEcCCCCcchHHHHHHHHhC-C---------cEEEEeccCCCCCcChhHHHhhccCCceEEEEeccccccccc
Q psy15216 1479 KKRGKHIITVQTEHKSVLDSIRKLEND-G---------FRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVI 1548 (2602)
Q Consensus 1479 ~~~gd~Vlv~~~~~~s~~~~~~~~~~~-G---------~~v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~ 1548 (2602)
...+|+|+++.++|++.......+... + ..+..++. .|+++|++++++++++|++++++||||.+
T Consensus 124 ~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~l~~~~~~v~~~~~~nptG~~ 198 (392)
T 3ruy_A 124 EANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPY-----GDLEALKAAITPNTAAFILEPIQGEAGIN 198 (392)
T ss_dssp CTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEEECT-----TCHHHHHHHCCTTEEEEEECSSBSTTTSB
T ss_pred CCCCcEEEEEcCCcCCCCHhhhhccCChhhccccCCCCCCCeeeCc-----ccHHHHHHHhccCeEEEEEeCccCCCCCc
Confidence 023679999999998866554433111 0 11333332 28999999999999999999999999999
Q ss_pred cC----hHHHHHHhhhcCCEEEEecccc-cCc----ccccCCCCCccEEEEccccccCC--CceEEEEEecCCCCccccc
Q psy15216 1549 QP----ILEIGELCRSKGVIFHCDAAQA-VGK----IDINIQNYKVDLMSFSAHKIYGP--KGIGALYIRRNPRTRIEAQ 1617 (2602)
Q Consensus 1549 ~~----l~~I~~ia~~~gi~vivD~a~~-~g~----~~~~l~~~~~D~~v~S~~K~~gp--~G~G~l~~~~~~~~~l~~~ 1617 (2602)
+| +++|.++|++||+++|+|++|+ ++. ...+.....+|++++ +|.+++ ..+|++++++++++.+.+.
T Consensus 199 ~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~--SK~l~gG~~~~G~~~~~~~~~~~~~~~ 276 (392)
T 3ruy_A 199 IPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVFACDWDNVTPDMYIL--GKALGGGVFPISCAAANRDILGVFEPG 276 (392)
T ss_dssp CCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEE--CGGGGTTTSCCEEEEECHHHHTTCCTT
T ss_pred cCCHHHHHHHHHHHHHcCCEEEEeechhCCCccccchhhhccCCCCCEEEE--chhhhCChhhhEEEEECHHHHhhhccC
Confidence 99 9999999999999999999995 332 122233345687755 594332 2279999998776666543
Q ss_pred cccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CcEEEeCCCCCCCCceEEEEEec
Q psy15216 1618 IHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESI-EEIYINGDMNNRIPHNLNISFNF 1696 (2602)
Q Consensus 1618 ~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~-~gl~i~~~~~~~~~~~~~~~~~~ 1696 (2602)
..+ ...+.+...+.++.++++.... ++..++.+++++++.+.|.+.. +.+....+ ...+..+.++.
T Consensus 277 ~~~-------~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~----~g~~~~~~~~~ 343 (392)
T 3ruy_A 277 SHG-------STFGGNPLACAVSIAALEVLEE--EKLTERSLQLGEKLVGQLKEIDNPMITEVRG----KGLFIGIELNE 343 (392)
T ss_dssp SSC-------CSSTTCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHTTCCCTTEEEEEE----ETTEEEEEESS
T ss_pred CcC-------CCCCCCHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHhcCCCceEEEe----eeeEEEEEEcc
Confidence 221 1235677777777788875443 6778888999999999998721 33433221 12334444444
Q ss_pred CCcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1697 IEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1697 ~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
+..++...| +||.++++. .+++|++++..+|.+|+++++++|++.
T Consensus 344 -~~~~l~~~l~~~gi~v~~~~-----------------------~~~iRi~~~~~~~~~~i~~~~~~l~~~ 390 (392)
T 3ruy_A 344 -PARPYCEQLKAAGLLCKETH-----------------------ENVIRIAPPLVISEEDLEWAFQKIKAV 390 (392)
T ss_dssp -CSHHHHHHHHTTTEECCCBT-----------------------TTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHCCcEEecCC-----------------------CCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 566777666 799988653 178999999999999999999999863
|
| >3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=2.3e-19 Score=234.57 Aligned_cols=341 Identities=12% Similarity=0.084 Sum_probs=224.4
Q ss_pred cccHHHHHHHHHhcC-CCccccceeeeeceeeecc-CCCCCCCHHHHHHHHH-HHhhc--cCCCCCccchhHHHHHHHHH
Q psy15216 1366 PSKFIEIKNSLEMTG-FKAESSGIVMRPYTNIVFK-DATTPIDPRVVDKMIP-YLRVQ--FGNPASRNHIYGWTAEKAIE 1440 (2602)
Q Consensus 1366 ~~~~~~v~~aL~~~g-~~~~~~ei~~iP~~~v~L~-~~~~~~~~~v~eal~~-~l~~~--~~np~~~~~~~~~~~~~~~~ 1440 (2602)
++.+..+.+.+++.. -.+.+..+++ |++ +...+.++.+.+++.+ .++.. ..++.. ....
T Consensus 10 ~~~~~~~~~~~~~~~~~~~i~l~~g~------y~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~----------~g~~ 73 (397)
T 3fsl_A 10 GDPILTLMERFKEDPRSDKVNLSIGL------YYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPM----------EGLN 73 (397)
T ss_dssp CCHHHHHHHHHHTCCCSCCEECSSCC------CCCTTSCCCCCHHHHHHHHHHHHSCCCCCCCCCT----------TCCH
T ss_pred CCchhhHHHHHhcCCCCCeEEEeeeE------EECCCCCccCcHHHHHHHHhhccCccccccCCCC----------CchH
Confidence 445566666665432 1222333321 222 2334566899999998 77642 122211 1246
Q ss_pred HHHHHHHHHhCC------CCC--cEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEe
Q psy15216 1441 KARNEVAQLIYA------DPR--EIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYL 1512 (2602)
Q Consensus 1441 ~lr~~ia~~~g~------~~~--~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v 1512 (2602)
++|+.++++++. +++ +|++|+|+|+|++.++..+. .+++||+|+++.|.|+++...++.. |++++.+
T Consensus 74 ~lr~~la~~~~~~~~~~~~~~~~~i~~t~g~~~a~~~~~~~~~--~~~~gd~vl~~~p~~~~~~~~~~~~---g~~~~~~ 148 (397)
T 3fsl_A 74 CYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLK--RYFPESGVWVSDPTWENHVAIFAGA---GFEVSTY 148 (397)
T ss_dssp HHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHH--HHCTTCCEEEESSCCHHHHHHHHHT---TCCEEEE
T ss_pred HHHHHHHHHHhcCCcccccccceEEEEcCCcHHHHHHHHHHHH--hcCCCCeEEEeCCCchhHHHHHHHc---CCceEEE
Confidence 788888888853 567 89999999999999954321 1379999999999999987666554 9999999
Q ss_pred cc--CCCCCcChhHHHhhcc---CCceEEEEeccccccccccC---hHHHHHHhhhcCCEEEEecccccCccc-----cc
Q psy15216 1513 KP--KNNGLITLSQLEEKIC---SDTILVSVMLVNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQAVGKID-----IN 1579 (2602)
Q Consensus 1513 ~~--~~~~~id~d~l~~~i~---~~t~lv~l~~~~n~tG~~~~---l~~I~~ia~~~gi~vivD~a~~~g~~~-----~~ 1579 (2602)
+. +.++.+|+++++++++ ++++++++++|+||||.+++ +++|+++|++||+++|+|++|+..... ..
T Consensus 149 ~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~ 228 (397)
T 3fsl_A 149 PWYDEATNGVRFNDLLATLKTLQAGSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYA 228 (397)
T ss_dssp CCEETTTTEECHHHHHHHHTTCCTTCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHH
T ss_pred eeeeccCCcCcHHHHHHHHHhCCCCCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHH
Confidence 88 4567899999999998 67899999999999999988 558899999999999999998643321 11
Q ss_pred ---C-CCCCccEEEEccccccCCCc--eEEEEEecC---CCCccccccccCCccccCCCCCcchhHHHHHHHHHHH----
Q psy15216 1580 ---I-QNYKVDLMSFSAHKIYGPKG--IGALYIRRN---PRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRL---- 1646 (2602)
Q Consensus 1580 ---l-~~~~~D~~v~S~~K~~gp~G--~G~l~~~~~---~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~---- 1646 (2602)
+ ...+..+++.|++|.+|++| +||+++... .+..+...... ..+....+++.....++..++..
T Consensus 229 ~~~~~~~~~~~i~~~S~SK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~l~ 305 (397)
T 3fsl_A 229 IRAIASAGLPALVSNSFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKA---TVRRNYSSPPNFGAQVVAAVLNDEALK 305 (397)
T ss_dssp HHHHHHTTCCEEEEEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHH---HHHTTTSSCCSHHHHHHHHHHTSHHHH
T ss_pred HHHHHhcCCCEEEEecccccccCcCCCeeEEEEecCCHHHHHHHHHHHHH---HHHhccCCCCHHHHHHHHHHhcCHHHH
Confidence 1 12345688889999999888 899987432 22212111000 00111234455555555555542
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHhhcCC--cEEEeCCCCCCCCceEEEEEecCCcHHHHHhc--CCEEEccccccCCC
Q psy15216 1647 --ARIEMKEELKRILFLQKRLYNGLMESIE--EIYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDIAVSSGSACTSA 1720 (2602)
Q Consensus 1647 --~~~~~~~~~~~~~~l~~~l~~~L~~~~~--gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~v~~g~~~~~~ 1720 (2602)
....+++.++++.++++++.+.|.+..+ ++.+..+. ..++.+...+...+...+ +||.+++|
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~gi~v~~g------ 373 (397)
T 3fsl_A 306 ASWLKEVEEMRTRILAMRQELVKVLSTEMPERNFDYLLNQ------RGMFSYTGLSAAQVDRLREEFGVYLIAS------ 373 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCCTHHHHC------CSSEEECCCCHHHHHHHHHTTCEECCTT------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceeecCC------ceEEEecCCCHHHHHHHHHhCCEEECCC------
Confidence 1345778889999999999999987322 34333221 112344444444444444 68888643
Q ss_pred CCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1721 SLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1721 ~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
+ |++++..+ .++|++++++|++
T Consensus 374 -------------------~--Ris~~~~~-~~~i~~~~~~l~~ 395 (397)
T 3fsl_A 374 -------------------G--RMCVAGLN-TANVQRVAKAFAA 395 (397)
T ss_dssp -------------------C--EEEGGGCC-TTTHHHHHHHHHH
T ss_pred -------------------C--eEEEEecC-HhhHHHHHHHHHh
Confidence 2 89987544 4779999999986
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.6e-19 Score=241.07 Aligned_cols=321 Identities=12% Similarity=0.079 Sum_probs=211.4
Q ss_pred CHHHHHHHHHHHhhc-cCCCCCccchhHHHHHHHHHHHHHHHHHHh----C--CC---CCcEEEeCCHHHHHHHHHHhhh
Q psy15216 1406 DPRVVDKMIPYLRVQ-FGNPASRNHIYGWTAEKAIEKARNEVAQLI----Y--AD---PREIIWTSGATESNNLAIKGAA 1475 (2602)
Q Consensus 1406 ~~~v~eal~~~l~~~-~~np~~~~~~~~~~~~~~~~~lr~~ia~~~----g--~~---~~~iv~t~gaT~al~~al~~l~ 1475 (2602)
++.+++++.+.+... +..|..| ..++|+.+++++ + .+ +++|++|+|+|+|++.++.++.
T Consensus 117 ~~~~v~a~~~~~~~~~y~~~~~g-----------~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~l~ 185 (533)
T 3f6t_A 117 RDKVVAEWVNGAVANNYPVPDRC-----------LVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVYAFHSLA 185 (533)
T ss_dssp HHHHHHHHHHHHHTCSCCSSSSC-----------CHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHhCCCCCCccc-----------HHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHHHHHHHHHhh
Confidence 456666666655432 2222221 234555555554 2 21 3689999999999999999831
Q ss_pred hh-hccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccC----CCCCcChhHHHhhccCCceEEEEeccccccccccC
Q psy15216 1476 HF-YKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK----NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP 1550 (2602)
Q Consensus 1476 ~~-~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~----~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~ 1550 (2602)
.. .+++||+|+++.|+|+++....... |+.++.++++ .++.+|+++|++++++++++|++++|+||||.++|
T Consensus 186 ~~~l~~~gd~Viv~~p~~~~~~~~~~~~---g~~~~~v~~~~~~~~~~~~d~~~l~~~l~~~~k~v~l~~p~NPtG~~~~ 262 (533)
T 3f6t_A 186 ENHLLKKGDKIAINEPIFTPYLRIPELK---DYELVEVDLHSYEKNDWEIEPNEIEKLKDPSIKALIVVNPTNPTSKEFD 262 (533)
T ss_dssp HTTSSCTTCEEEEESSCCHHHHTSGGGG---GSEEEEECCCEETTTTSEECHHHHHHHSCTTEEEEEEESSCTTTCBCCC
T ss_pred hhhccCCcCEEEEcCCCcHHHHHHHHHc---CCeEEEEEecCCcccCCCCCHHHHHHHhCCCCeEEEEeCCCCCCccccC
Confidence 10 1389999999999999987655544 8899999875 35779999999999999999999999999999999
Q ss_pred hH---HHHHHhh-hcCCEEEEecccccCcc-cccCC--CCCccEEEEccccccCCCc--eEEEEEecC-----CCCcccc
Q psy15216 1551 IL---EIGELCR-SKGVIFHCDAAQAVGKI-DINIQ--NYKVDLMSFSAHKIYGPKG--IGALYIRRN-----PRTRIEA 1616 (2602)
Q Consensus 1551 l~---~I~~ia~-~~gi~vivD~a~~~g~~-~~~l~--~~~~D~~v~S~~K~~gp~G--~G~l~~~~~-----~~~~l~~ 1616 (2602)
.+ +|+++|+ +||+++|+|++|+.... ...+. ..+.++++.|+||.+|++| +||++++++ +++.+.+
T Consensus 263 ~~~l~~l~~la~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~~~~~~~~~li~~l~~ 342 (533)
T 3f6t_A 263 TNALNAIKQAVEKNPKLMIISDEVYGAFVPNFKSIYSVVPYNTMLVYSYSKLFGCTGWRLGVIALNEKNVFDDNIAHLDK 342 (533)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEECTTGGGSTTCCCHHHHSGGGEEEEEESHHHHTCGGGCEEEEEEESSCHHHHHHHTSCH
T ss_pred HHHHHHHHHHHHhCCCCEEEEcCCccccccCccCHhhcCCCCEEEEecCcccCCCcccceEEEEECcHHHHHHHHHhcch
Confidence 66 7888888 68999999999873221 11111 1135689999999999888 899999987 4333321
Q ss_pred c--------cc-----------------cCCccccCCCCCcchhHHHHHHH-HHHHH---------HHHHHHHHHHHHHH
Q psy15216 1617 Q--------IH-----------------GGGHEYGLRSGTLATHQIVGMGE-AFRLA---------RIEMKEELKRILFL 1661 (2602)
Q Consensus 1617 ~--------~~-----------------g~~~~~~~~~gt~~~~~~~al~~-aL~~~---------~~~~~~~~~~~~~l 1661 (2602)
. +. ...........+.+.+.+.++.. ++..+ ...+++.+++++++
T Consensus 343 ~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~a~a~~a~~~L~~~~g~~~~~~~~~~~~~~~~~r 422 (533)
T 3f6t_A 343 VELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEALFSMTHLLTSTNGGSDDPYIDIARKLVSER 422 (533)
T ss_dssp HHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGCSCCHHHHHHHHHHHHHHHTTCBGGGTBCHHHHHHHHHHHHH
T ss_pred hhHHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHH
Confidence 0 00 00001112233455555554321 22222 24567788888999
Q ss_pred HHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEec-----------------CCcHHHHHhc---CCEEEccccccCCCC
Q psy15216 1662 QKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-----------------IEGESLLMAI---KDIAVSSGSACTSAS 1721 (2602)
Q Consensus 1662 ~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~L---~gI~v~~g~~~~~~~ 1721 (2602)
++++.+.|. + ++.+..+.. .....+.++. .+..+++..+ +||.+.+|..|..+
T Consensus 423 ~~~l~~~L~--~-~~~~~~~~~---g~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~ll~~~GV~v~pg~~f~~~- 495 (533)
T 3f6t_A 423 YDQLHDAMQ--A-PKDETDTNT---HYYSLIDIYRLAEKIYGKEFRDYLTNNFEQVDFLLKLAEKNGVVLVDGVGFGAK- 495 (533)
T ss_dssp HHHHHHHHT--C-CCCCSTTBC---CSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHTTSSSCTTEEECSS-
T ss_pred HHHHHHhcC--C-CccccCCCc---eEEEEEehHhhhhhccchHHHHHhhccCCHHHHHHHHHHhCCEEEeCCcccCCC-
Confidence 999999984 2 333221111 1112222221 1233444433 69999999988653
Q ss_pred CChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1722 LEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1722 ~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
.+++|||++. .+.+++++++++|++.
T Consensus 496 -----------------~~~iRls~a~-~~~e~i~~~i~~L~~~ 521 (533)
T 3f6t_A 496 -----------------PGELRVSQAN-LPTEDYALIGKQVLEL 521 (533)
T ss_dssp -----------------TTEEEEESSS-SCHHHHHHHHHHHHHH
T ss_pred -----------------CCEEEEEEee-CCHHHHHHHHHHHHHH
Confidence 3799999964 4789999999999973
|
| >1q5l_A Chaperone protein DNAK; HSP70, chaperone, heat shock protein; NMR {Escherichia coli} SCOP: b.130.1.1 | Back alignment and structure |
|---|
Probab=99.81 E-value=5.5e-20 Score=195.58 Aligned_cols=121 Identities=45% Similarity=0.688 Sum_probs=111.5
Q ss_pred CceeeeccccccceEEeeccEEEEEEecCCcCCCCcEEEEEeecccccceeEEEeecCcccccCCceeEEEEeeCCCCCC
Q psy15216 2402 DNFLLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMP 2481 (2602)
Q Consensus 2402 ~~~~~~d~~~~~~gi~~~~~~~~~ii~k~t~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~~~~~~ 2481 (2602)
.++.+.|++|++||+++.++.|.++|+||++||+++++.|++..|||+.+.|.||||++..+.+|..||+|.|+++||.|
T Consensus 15 ~d~~l~Dv~p~slGIe~~~g~~~~lI~rnt~iP~~k~~~f~t~~dnQ~~v~I~VyqGe~~~~~~n~~Lg~f~l~gipp~p 94 (135)
T 1q5l_A 15 RGSHMVDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAP 94 (135)
T ss_dssp ------CCCSSCCCEEETTTEECCSSCSSSCSSBCCEEEECCCSSSCSSCEEEEEECCSSSCSSSEEEEEEECCCCCSCC
T ss_pred CcEEEEEeecCcEEEEEECCEEEEEEcCCCeEeEeEeEEEEeccCCceEEEEEEEEeCCcccccCcEEEEEEEeCCCCCC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEEEEEcCCccEEEEEEeecCCcEEEEEEecCCCC
Q psy15216 2482 AGRARIKVTYQVDADGLLSIFAYEKISGKKKFITIKPFYNM 2522 (2602)
Q Consensus 2482 ~g~~~i~v~f~id~~g~l~V~a~~~~tg~~~~~~i~~~~~l 2522 (2602)
+|+++|+|+|+||.||+|+|+|+++.||++.+++|+...+|
T Consensus 95 ~G~~~IeVtf~iD~nGiL~V~a~d~~tg~~~~i~i~~~~~l 135 (135)
T 1q5l_A 95 RGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGL 135 (135)
T ss_dssp SSSCCEEEEEEECTTSEEEEEEEETTTCCEEEEEEECSCCC
T ss_pred CceeEEEEEEEECCCCEEEEEEEECCCCCEEEEEEecCCCC
Confidence 99999999999999999999999999999999999887554
|
| >2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=3e-19 Score=230.35 Aligned_cols=302 Identities=13% Similarity=0.082 Sum_probs=204.7
Q ss_pred CCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCC-CCcEEEeCCHHHHHHHHHHhhhhhhcc
Q psy15216 1402 TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYAD-PREIIWTSGATESNNLAIKGAAHFYKK 1480 (2602)
Q Consensus 1402 ~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~-~~~iv~t~gaT~al~~al~~l~~~~~~ 1480 (2602)
+.+.++.+++++.. +++| ....+++++.+++++|++ ++++++++|+|+|++.++.++
T Consensus 39 ~~~~~~~v~~a~~~-----~~~~-----------~~~~~~~~~~~a~~~g~~~~~~~~~~~ggt~a~~~~~~~~------ 96 (374)
T 2aeu_A 39 GFLIDEKDKALLNT-----YIGS-----------SYFAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILAL------ 96 (374)
T ss_dssp CCCCCHHHHHHHTS-----TTHH-----------HHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHH------
T ss_pred CCCCCHHHHHHHHH-----hcCc-----------hHHHHHHHHHHHHHhCCCCcceEEEEcChHHHHHHHHHhC------
Confidence 45778888888851 1111 123466777888999983 468999999999999998864
Q ss_pred CCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccCCceE-EEEeccccccc-cccChHHHHHHh
Q psy15216 1481 RGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTIL-VSVMLVNNEIG-VIQPILEIGELC 1558 (2602)
Q Consensus 1481 ~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~~t~l-v~l~~~~n~tG-~~~~l~~I~~ia 1558 (2602)
+||+|++++++|+++...+..+...|++++.+ .|+++++++ +++|++ |++++|+|||| ...|+++|.++|
T Consensus 97 ~gd~Vl~~~~~y~~~~~~~~~~~~~g~~~~~v-------~d~~~l~~~-~~~~~~~v~~~~p~nptG~~~~~l~~i~~l~ 168 (374)
T 2aeu_A 97 KPKKVIHYLPELPGHPSIERSCKIVNAKYFES-------DKVGEILNK-IDKDTLVIITGSTMDLKVIELENFKKVINTA 168 (374)
T ss_dssp CCSEEEEECSSSSCCTHHHHHHHHTTCEEEEE-------SCHHHHHTT-CCTTEEEEEECBCTTSCBCCHHHHHHHHHHH
T ss_pred CCCEEEEecCCCCccHHHHHHHHHcCcEEEEe-------CCHHHHHhc-CCCccEEEEEccCCCCCCCCcccHHHHHHHH
Confidence 79999999999988766555556669999888 389999999 889999 99999999999 888999999999
Q ss_pred hhcCCEEEEecccccCcc-cc-c--CCCCCccEEEEcccccc-CCCceEEEEEecCCCCccccccccCCccccCCCCCcc
Q psy15216 1559 RSKGVIFHCDAAQAVGKI-DI-N--IQNYKVDLMSFSAHKIY-GPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLA 1633 (2602)
Q Consensus 1559 ~~~gi~vivD~a~~~g~~-~~-~--l~~~~~D~~v~S~~K~~-gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~ 1633 (2602)
++||+++|+|++|+.+.. +. . ...+++|++++|+||.+ |+ ++||+++++++++.+..... ...++++
T Consensus 169 ~~~~~~li~De~~~~~~~~~~~~~~~~~~~~di~~~S~sK~l~g~-~~G~~~~~~~~~~~l~~~~~-------~~~~~~~ 240 (374)
T 2aeu_A 169 KNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEGP-RGGLLAGKKELVDKIYIEGT-------KFGLEAQ 240 (374)
T ss_dssp HHHTCCEEEECTTHHHHHHHTTCCCHHHHTCSEEEEETTSSSSSC-SCEEEEEEHHHHHHHHHHHH-------TTTCBCC
T ss_pred HHcCCEEEEECCcccccccccccCCccccCCcEEEecCcccccCc-ceEEEEECHHHHHHHHHhhc-------cccCCCC
Confidence 999999999999876531 11 1 11246799999999954 55 57999999877766654321 1123556
Q ss_pred hhHHHHHHHHHHHHHH-HHHHHHHHHHHH----HHHHHHHHhhcC---CcEEEeCCCCCCCCceEEEEEecCCc-H----
Q psy15216 1634 THQIVGMGEAFRLARI-EMKEELKRILFL----QKRLYNGLMESI---EEIYINGDMNNRIPHNLNISFNFIEG-E---- 1700 (2602)
Q Consensus 1634 ~~~~~al~~aL~~~~~-~~~~~~~~~~~l----~~~l~~~L~~~~---~gl~i~~~~~~~~~~~~~~~~~~~~~-~---- 1700 (2602)
...+.++.++++.... .+....+..+.+ ++.+.+.|.. + +++.+..+ +....+.+..... .
T Consensus 241 ~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~g~~~~~~-----~~g~~~~~~~~~~~~~~~~ 314 (374)
T 2aeu_A 241 PPLLAGIYRALKNFNLERIRKAFERAKNFDLSKIEKLNKELKA-IDDNINIVYERT-----PTGFVIKRVYKDDTINIKK 314 (374)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHTT-TCTTEEEEEEEC-----SSEEEEEEEESSHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhhccCcceeeC-----CceEEEEeecccccccccc
Confidence 6667677677764321 233333333333 4555665544 3 35554322 2233333322211 1
Q ss_pred --HHHHh-c--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCC-CCCHHHHHHHHHHHHHh
Q psy15216 1701 --SLLMA-I--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGR-FTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1701 --~~~~~-L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~-~~t~edid~li~~L~~~ 1765 (2602)
++... + +||.+++|..+... .+++||+++. ..+..+++++.++|++.
T Consensus 315 ~~~~~~~ll~~~gV~v~~g~~~~~~------------------~~~lRi~~~~~~~~~~~l~~l~~~l~~~ 367 (374)
T 2aeu_A 315 LIEIGFNLLKNYGIITITVAGMPGA------------------SKSLRIDLTSRDAERIDDNYIIKAIVES 367 (374)
T ss_dssp HHHHHHHHHHHHCEECSTTSSSCSS------------------CCSEEEETTSGGGGGSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCCEEEecCCCCCCC------------------CCeEEEEcCCchHHHHHHHHHHHHHHHH
Confidence 13322 2 69999988654211 2689999874 22333588888888764
|
| >7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.7e-19 Score=236.00 Aligned_cols=339 Identities=12% Similarity=0.071 Sum_probs=218.8
Q ss_pred cccHHHHHHHHHhcCCC-ccccceeeeeceeeeccC-CCCCCCHHHHHHHHHHHhh--ccCCCCCccchhHHHHHHHHHH
Q psy15216 1366 PSKFIEIKNSLEMTGFK-AESSGIVMRPYTNIVFKD-ATTPIDPRVVDKMIPYLRV--QFGNPASRNHIYGWTAEKAIEK 1441 (2602)
Q Consensus 1366 ~~~~~~v~~aL~~~g~~-~~~~ei~~iP~~~v~L~~-~~~~~~~~v~eal~~~l~~--~~~np~~~~~~~~~~~~~~~~~ 1441 (2602)
|+.+..+.+.+...+-+ +.+..++ .|++. ...+..+.+.+++.+.... ...+++. . ...+
T Consensus 12 ~~~i~~~~~~~~~~~~~~~i~l~~g------~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~----~------g~~~ 75 (401)
T 7aat_A 12 PDPILGVTEAFKRDTNSKKMNLGVG------AYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPI----A------GLAD 75 (401)
T ss_dssp CCHHHHHHHHHHHCCCTTCEECCCC------SCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCCT----T------CCHH
T ss_pred CChhHHHHHHHhhCCCCCceeeeee------eEECCCCCEechHHHHHHHHHhcccccccCCCCC----C------CCHH
Confidence 45566666666654322 2333332 12222 2234456788888877653 1222221 1 1467
Q ss_pred HHHHHHHHhCC------CCCcEEE--eCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEec
Q psy15216 1442 ARNEVAQLIYA------DPREIIW--TSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLK 1513 (2602)
Q Consensus 1442 lr~~ia~~~g~------~~~~iv~--t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~ 1513 (2602)
+|++++++++. ++++|++ |+|+|+|+++++.++. ...++||+|++++|+|+++...++.. |++++.++
T Consensus 76 lr~~ia~~~~~~~~~~~~~~~i~~v~t~G~~~al~~~~~~l~-~~~~~gd~Vlv~~p~~~~~~~~~~~~---g~~~~~~~ 151 (401)
T 7aat_A 76 FTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQ-RFFKFSRDVYLPKPSWGNHTPIFRDA---GLQLQAYR 151 (401)
T ss_dssp HHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHH-HHCTTCCEEEEEESCCTTHHHHHHHT---TCEEEEEE
T ss_pred HHHHHHHHhcCCCccccccCceEEEecCcchHHHHHHHHHHH-HhccCCCEEEEcCCCchhHHHHHHHc---CCeeEeee
Confidence 88888888854 3789977 9999999999987764 22478999999999999988776655 99999998
Q ss_pred cC--CCCCcChhHHHhhc---cCCceEEEEeccccccccccC---hHHHHHHhhhcCCEEEEecccccCcc-cc-----c
Q psy15216 1514 PK--NNGLITLSQLEEKI---CSDTILVSVMLVNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQAVGKI-DI-----N 1579 (2602)
Q Consensus 1514 ~~--~~~~id~d~l~~~i---~~~t~lv~l~~~~n~tG~~~~---l~~I~~ia~~~gi~vivD~a~~~g~~-~~-----~ 1579 (2602)
.+ .++.+|++.+++.+ +++++++++++||||||.+++ +++|+++|++||+++++|++|..... .. .
T Consensus 152 ~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~ 231 (401)
T 7aat_A 152 YYDPKTCSLDFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWA 231 (401)
T ss_dssp CEETTTTEECHHHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHH
T ss_pred eeccccCccCHHHHHHHHHhCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHH
Confidence 75 36789999666665 468899999999999999888 77888999999999999999763221 11 1
Q ss_pred C----CCCCccEEEEccccccCCCc--eEEEEEec---C----CCCccccccccCCccccCCCCCcchhHHHHHHHHHHH
Q psy15216 1580 I----QNYKVDLMSFSAHKIYGPKG--IGALYIRR---N----PRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRL 1646 (2602)
Q Consensus 1580 l----~~~~~D~~v~S~~K~~gp~G--~G~l~~~~---~----~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~ 1646 (2602)
+ ......+++.|+||.+|++| +||+++.. + +...+..... ....+++...+.++..++..
T Consensus 232 ~~~~~~~~~~~i~~~S~sK~~~~~G~RiG~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~ 304 (401)
T 7aat_A 232 LRHFIEQGIDVVLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIR-------PMYSNPPMNGARIASLILNT 304 (401)
T ss_dssp HHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHH-------HHHSSCCHHHHHHHHHHHHC
T ss_pred HHHHHhcCCcEEEEecCCcccccccCceEEEEEEeCCHHHHHHHHHHHHHHHH-------hccCCCChHHHHHHHHHhCC
Confidence 1 12234688899999999888 89999742 1 1111111110 00112333333333334431
Q ss_pred --H----HHHHHHHHHHHHHHHHHHHHHHhhcC--CcEEEeCCCCCCCCceEEEEEecCCcHHHHHhc--CCEEEccccc
Q psy15216 1647 --A----RIEMKEELKRILFLQKRLYNGLMESI--EEIYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDIAVSSGSA 1716 (2602)
Q Consensus 1647 --~----~~~~~~~~~~~~~l~~~l~~~L~~~~--~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~v~~g~~ 1716 (2602)
+ ...+++.+++++++++++.+.|.+.. +++.+..+ ...++.|...+.+.+...+ +||.+.
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ll~~~gi~v~---- 374 (401)
T 7aat_A 305 PELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSSHNWQHITD------QIGMFCFTGLKPEQVERLTKEFSIYMT---- 374 (401)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHH------CCSSEEECCCCHHHHHHHHHHHCEECC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceecC------CcceEEecCCCHHHHHHHHHhCCEecc----
Confidence 1 34467788899999999999998721 12332211 2223444444444443332 578764
Q ss_pred cCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1717 CTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1717 ~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
..+|+|++..++. +|++++++|++.
T Consensus 375 -----------------------~~~Ris~~~~~~~-~i~~~~~~l~~~ 399 (401)
T 7aat_A 375 -----------------------KDGRISVAGVASS-NVGYLAHAIHQV 399 (401)
T ss_dssp -----------------------TTCEEEGGGCCTT-THHHHHHHHHHH
T ss_pred -----------------------CCCeEEeccCChh-hHHHHHHHHHHH
Confidence 2379999876664 599999999863
|
| >3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.5e-19 Score=237.24 Aligned_cols=317 Identities=15% Similarity=0.017 Sum_probs=212.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHh-hhcCCCCCCCcchhhhHHHHHHHHHHHHHHHh-CCC-----CCcEEE--eCCHHHHH
Q psy15216 1 MDYSATTPIDPRVVDKMIPYLR-VQFGNPASRNHIYGWTAEKAIEKARNEVAQLI-YAD-----PREIIW--TSGATESN 71 (2602)
Q Consensus 1 Ld~a~~~~~p~~v~~a~~~~l~-~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~-g~~-----~~~Iv~--t~g~T~al 71 (2602)
+|+.+.+++.+.+.+++.+... ....+... .. .....++|+.+++++ |.+ +++|++ |+|+|+|+
T Consensus 60 ~d~~~~~~v~~av~~a~~~~~~~~~~~~~~Y---~~----~~G~~~lr~~ia~~l~g~~~~~~~~~~i~~~~t~ggt~al 132 (448)
T 3meb_A 60 RDESGKPWILPAVKEAEAIISSDLSKYNKEY---PP----VAGFPLFLEAAQFLMFGKDSKAAQEGRIASCQSLSGTGSL 132 (448)
T ss_dssp CCTTSCCCCCHHHHHHHHHHHHCTTTTCCSC---CC----TTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHH
T ss_pred cCCCCCEechHHHHHHHHHHhhcccCCCCCC---CC----CcchHHHHHHHHHHhcCCCccccCcCcEEEEECCcHHHHH
Confidence 4667777788888888766541 11111111 11 112467889999987 876 689999 99999999
Q ss_pred HHHH--HhcccccccCCCEEEEcCCCCcccHHHHH-HHHhCCcEEEEecc-CCC--CccChHHHHhhcc---CCceEEEE
Q psy15216 72 NLAI--KGAAHFYKKRGKHIITVQTEHKSVLDSIR-KLENDGFRVTYLKP-KNN--GLITLSQLEEKIC---SDTILVSV 142 (2602)
Q Consensus 72 ~~~~--~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~-~~~~~G~~v~~v~~-~~~--~~ld~e~l~~~i~---~~tklv~i 142 (2602)
++++ .++. .+||+|++++|+|+++...++ .++..|++++.++. +++ +.+|+++++++++ ++++++++
T Consensus 133 ~l~~~~~~~~----~~gd~Vlv~~p~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~~~~~d~e~l~~~l~~~~~~~~~v~~ 208 (448)
T 3meb_A 133 HIGFEFLHLW----MPKAEFYMPSTTWPNHYGIYDKVFNKLKVPYKEYTYLRKDGELEIDFSNTKKDIQSAPEKSIFLFH 208 (448)
T ss_dssp HHHHHHHHHH----CTTCCEEEESSCCTHHHHHHHHHHCTTTSCCEEECCBCTTSCSSBCHHHHHHHHHHSCTTCEEEEE
T ss_pred HHHHHHHHHh----CCCCEEEECCCCCHhHHHHHHhhHHhCCCeEEEEeccccccCCCcCHHHHHHHHHhCCCCcEEEEe
Confidence 8844 4444 799999999999999877766 11144999999998 554 7899999999997 46889999
Q ss_pred ecccCcccccccHH---HHHHHHHhcCCEEEEeccccccc-ccc-----cC----CCCCccEEEeccccccCCCC--cEE
Q psy15216 143 MLVNNEIGVIQPIL---EIGELCRSKGVIFHCDAAQAVGK-IDI-----NI----QNYKVDLMSFSAHKIYGPKG--IGA 207 (2602)
Q Consensus 143 ~~~~npTG~~~~l~---~I~~la~~~g~~livD~a~a~g~-~~~-----dl----~~~~~D~~~~S~~K~~Gp~G--~G~ 207 (2602)
++||||||.+++.+ +|+++|++||+++|+|++|.... .+. .+ ......+++.|+||.+|++| +||
T Consensus 209 ~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~ 288 (448)
T 3meb_A 209 ACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVRMFVDAGVEVLVAQSFSKNFGLYGERIGC 288 (448)
T ss_dssp SSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCCEE
T ss_pred CCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEecccccccCCCcccCchhHHHHhhcCCcEEEEecccccCCCcccccee
Confidence 99999999999855 48999999999999999976322 111 01 11123477889999999888 899
Q ss_pred E--EE--------e-c----CCCCcccceecCCCccccccccCcchhHHHHHHHHHHHH---H---HhHHHHHHHHHHHH
Q psy15216 208 L--YI--------R-R----NPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLA---R---IEMKEELKRILFLQ 266 (2602)
Q Consensus 208 l--~~--------~-~----~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~---~---~~~~~~~~~~~~l~ 266 (2602)
+ ++ + + +++..+.... +....+++.+...++.++|... . ..+++.++++.+++
T Consensus 289 l~~v~~~~~~~~~~~~~~~~~l~~~l~~~~-------~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~r 361 (448)
T 3meb_A 289 LHVVHAGVEGSVEKNKALSAAMVSGMTLQI-------RKTWSMSAIHGAYIVQVIVHDKRLLQMFYDNVKEMSARIHRMR 361 (448)
T ss_dssp EEEECCCCSSSHHHHHHHHHHHHHHHHHHH-------HTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeeeccccccccCCHHHHHHHHHHHHHHH-------hcccCCccHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 8 55 3 3 2333332211 1122345556666665666521 1 33678888899999
Q ss_pred HHHHHHHhhc-cCc------eEEeCCCCCCCCceEEEEEcccChhHHHHHh---CCeEEcccccCCCCCCChHHHHHHcC
Q psy15216 267 KRLYNGLMES-IEE------IYINGDMNNRIPHNLNISFNFIEGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALG 336 (2602)
Q Consensus 267 ~~l~~~L~~~-~~g------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g 336 (2602)
+++.+.|.+. .++ +....+ ....+.+...+. +++..+ +||.+.+|.
T Consensus 362 ~~l~~~L~~~~~~~~~~~~~~~~~~~------~~g~~~~~~~~~-~~~~~ll~~~gV~v~~G~----------------- 417 (448)
T 3meb_A 362 SLLHASLAKRKTPGPGSKGTWDHILT------AIGMFTFTGLTP-EHVDYLKEKWSIYLVKAG----------------- 417 (448)
T ss_dssp HHHHHHHHHTTCCCSTTTCCCTHHHH------CCSSEEECCCCH-HHHHHHHHHHCEEECSGG-----------------
T ss_pred HHHHHHHHhhCCCCcCcccccceeCC------CceEEEecCCCH-HHHHHHHHhCCEEEeCCC-----------------
Confidence 9999999772 133 222211 122244444443 333333 589987553
Q ss_pred CCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 337 CNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 337 ~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
.|||++.. +.+++++++++|++.
T Consensus 418 ---------gRis~a~~-~~~~i~~~~~~l~~~ 440 (448)
T 3meb_A 418 ---------GRMSMCGL-TESNCDYVAEAIHDA 440 (448)
T ss_dssp ---------GEEEGGGC-CTTTHHHHHHHHHHH
T ss_pred ---------cEEEEecC-CHHHHHHHHHHHHHH
Confidence 29999754 446699999999864
|
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=9.4e-20 Score=236.71 Aligned_cols=278 Identities=14% Similarity=0.114 Sum_probs=197.6
Q ss_pred HHHHHHHHHHhCC-----CC-CcEEEeCCHHHHHHHHHHhhhhhhccCCC----EEEEcCCCCcchHHHHHHHHhCCcEE
Q psy15216 1440 EKARNEVAQLIYA-----DP-REIIWTSGATESNNLAIKGAAHFYKKRGK----HIITVQTEHKSVLDSIRKLENDGFRV 1509 (2602)
Q Consensus 1440 ~~lr~~ia~~~g~-----~~-~~iv~t~gaT~al~~al~~l~~~~~~~gd----~Vlv~~~~~~s~~~~~~~~~~~G~~v 1509 (2602)
.++|++++++++. ++ ++|++|+|+++++++++.++. ++|| +|++++|+|+++...++.. |+++
T Consensus 71 ~~lr~aia~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~l~----~~Gd~~~~~Vlv~~P~y~~~~~~~~~~---g~~~ 143 (391)
T 3bwn_A 71 PELEDAIKDLHGVVGNAATEDRYIVVGTGSTQLCQAAVHALS----SLARSQPVSVVAAAPFYSTYVEETTYV---RSGM 143 (391)
T ss_dssp HHHHHHHHHHHHHHCSBCCSSSEEEEEEHHHHHHHHHHHHHH----HTSSSSSEEEEECSSCCTHHHHHHHTT---CBTT
T ss_pred HHHHHHHHHHHHhcCCCCCCCCeEEEeCChHHHHHHHHHHhc----CCCCCCcceEEEcCCCchhHHHHHHHc---CCeE
Confidence 6788899988862 34 589999999999999999987 7999 9999999999987766544 8888
Q ss_pred EEeccCCCCCcChhHHHhhccCCceEEEEeccccccccccChHHHHHHhhhcCCEEEEecccccCc-ccccCCCCCccEE
Q psy15216 1510 TYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGK-IDINIQNYKVDLM 1588 (2602)
Q Consensus 1510 ~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~~ia~~~gi~vivD~a~~~g~-~~~~l~~~~~D~~ 1588 (2602)
+.++.+.++ ++ .+++++|++++|+||||.+++ +|++.++.+++++|+|++|+.+. .++.. ..+.+++
T Consensus 144 ~~~~~d~~~------l~---~~~~k~v~l~~p~NPtG~~~~--~l~~~~~~~~~~ii~De~y~~~~~~~l~~-~~~~~i~ 211 (391)
T 3bwn_A 144 YKWEGDAWG------FD---KKGPYIELVTSPNNPDGTIRE--TVVNRPDDDEAKVIHDFAYYWPHYTPITR-RQDHDIM 211 (391)
T ss_dssp EEEEEESTT------CC---CCSCEEEEEESSCTTTCCCCC--CCC-----CCCEEEEECTTCSTTTSCCCC-CBCCSEE
T ss_pred EEecCCHHH------cC---CCCCEEEEECCCCCCCchhHH--HHHHHhhcCCCEEEEeCCCCCCCCCcccc-CCCCeEE
Confidence 888766432 11 367899999999999999997 45442222339999999998542 12222 3456899
Q ss_pred EEccccccCCCc--eEEEEE-ecCCCCccccccccCCccccCCCCCcchhHHHHHHHHHHHH----------HHHHHHHH
Q psy15216 1589 SFSAHKIYGPKG--IGALYI-RRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLA----------RIEMKEEL 1655 (2602)
Q Consensus 1589 v~S~~K~~gp~G--~G~l~~-~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~----------~~~~~~~~ 1655 (2602)
+.|+||.+|++| +||+++ ++++++.+..... ....+++.+.+.++..+|+.. ..++++.+
T Consensus 212 ~~S~SK~~g~~GlRiG~~~~~~~~l~~~l~~~~~-------~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~ 284 (391)
T 3bwn_A 212 LFTFSKITGHAGSRIGWALVKDKEVAKKMVEYII-------VNSIGVSKESQVRTAKILNVLKETCKSESESENFFKYGR 284 (391)
T ss_dssp EEEHHHHHSCGGGCEEEEEECCHHHHHHHHHHHH-------HHHSSCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHH
T ss_pred EEechhhcCCCccceEEEEecCHHHHHHHHHHhc-------ccccCCCHHHHHHHHHHHhCcchhccccccHHHHHHHHH
Confidence 999999999888 699998 6666555544321 112355666666676777743 34578889
Q ss_pred HHHHHHHHHHHHHHhhcCCcEEEeCCCCCC--------CCceEEEEEecCCcHHHHHhc--CCEEEccccccCCCCCChh
Q psy15216 1656 KRILFLQKRLYNGLMESIEEIYINGDMNNR--------IPHNLNISFNFIEGESLLMAI--KDIAVSSGSACTSASLEPS 1725 (2602)
Q Consensus 1656 ~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~--------~~~~~~~~~~~~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~ 1725 (2602)
++++++++++.+.|.+ .+++.+..+.... .+.+.++++...+...+...| +||.+++|..|+..
T Consensus 285 ~~~~~~~~~l~~~L~~-~~~~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~~~~~~~~l~~~gV~v~pg~~fg~~----- 358 (391)
T 3bwn_A 285 EMMKNRWEKLREVVKE-SDAFTLPKYPEAFCNYFGKSLESYPAFAWLGTKEETDLVSELRRHKVMSRAGERCGSD----- 358 (391)
T ss_dssp HHHHHHHHHHHHHHHT-CSSEECCCCCCEEETTTTEEECCCCSEEEEEESSSCCHHHHHHHTTEECEEGGGGTCC-----
T ss_pred HHHHHHHHHHHHHHHh-CCCcccccCCccccccccccCCCcceEEEecCCcHHHHHHHHHHCCEEEccCCCCCCC-----
Confidence 9999999999999988 6777765432211 011112333322223333333 89999999987431
Q ss_pred HHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1726 YVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1726 ~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
.+++|||++ ++.+++++++++|++
T Consensus 359 -------------~~~iRis~~--~~~e~i~~~~~~L~~ 382 (391)
T 3bwn_A 359 -------------KKHVRVSML--SREDVFNVFLERLAN 382 (391)
T ss_dssp -------------TTEEEEESC--SCHHHHHHHHHHHHS
T ss_pred -------------CCEEEEEec--CCHHHHHHHHHHHHH
Confidence 279999998 488999999999986
|
| >1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=9.1e-20 Score=239.53 Aligned_cols=318 Identities=14% Similarity=0.066 Sum_probs=215.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHh-CC-----CCCcEEE--eCCHHHHHHH
Q psy15216 2 DYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI-YA-----DPREIIW--TSGATESNNL 73 (2602)
Q Consensus 2 d~a~~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~-g~-----~~~~Iv~--t~g~T~al~~ 73 (2602)
|..+..++++.+.+++.+.+... ...+ .|. ......++|+++++++ +. ++++|++ |+|+++|+++
T Consensus 42 ~~~~~~~~~~~v~~a~~~~~~~~-~~~~--~y~----~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~t~gg~~a~~~ 114 (412)
T 1ajs_A 42 TDDCQPWVLPVVRKVEQRIANNS-SLNH--EYL----PILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRI 114 (412)
T ss_dssp CTTSCCCCCHHHHHHHHHHHTCT-TCCC--CCC----CTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHH
T ss_pred CCCCCccccHHHHHHHHHhhhCh-hhcc--CCC----CCCCCHHHHHHHHHHHhcCCCCccCCCcEEEEECCCcHHHHHH
Confidence 34444567789999998876321 0000 011 1123467889999988 53 6789999 9999999999
Q ss_pred HHHhcccccccCC-----CEEEEcCCCCcccHHHHHHHHhCCcE-EEEeccC--CCCccChHHHHhhccC---CceEEEE
Q psy15216 74 AIKGAAHFYKKRG-----KHIITVQTEHKSVLDSIRKLENDGFR-VTYLKPK--NNGLITLSQLEEKICS---DTILVSV 142 (2602)
Q Consensus 74 ~~~~l~~~~~~~g-----d~Vlv~~~~~~s~~~~~~~~~~~G~~-v~~v~~~--~~~~ld~e~l~~~i~~---~tklv~i 142 (2602)
++..+. .+.+| |+|+++.+.|+++...+... |++ ++.++.+ +++.+|++++++++++ +++++++
T Consensus 115 ~~~~~~--~~~~g~~~~~d~Vl~~~p~y~~~~~~~~~~---g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~ 189 (412)
T 1ajs_A 115 GAEFLA--RWYNGTNNKDTPVYVSSPTWENHNGVFTTA---GFKDIRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVLH 189 (412)
T ss_dssp HHHHHH--HHSSSSSCCCSCEEEEESCCTHHHHHHHHT---TCSCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEE
T ss_pred HHHHHH--HhCcCcCCCCCeEEEcCCCcHHHHHHHHHc---CCceeEEEeeecCCCCccCHHHHHHHHHhCCCCcEEEEE
Confidence 965332 12689 99999999999987666554 888 9888873 5677999999999864 7889999
Q ss_pred ecccCccccccc---HHHHHHHHHhcCCEEEEecccccc-cc-------ccc-CC-CCCccEEEeccccccCCCC--cEE
Q psy15216 143 MLVNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQAVG-KI-------DIN-IQ-NYKVDLMSFSAHKIYGPKG--IGA 207 (2602)
Q Consensus 143 ~~~~npTG~~~~---l~~I~~la~~~g~~livD~a~a~g-~~-------~~d-l~-~~~~D~~~~S~~K~~Gp~G--~G~ 207 (2602)
++|+||||.++| +++|+++|++||+++|+|++|... .. ++. +. ..+..+++.|+||.+|++| +||
T Consensus 190 ~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~ 269 (412)
T 1ajs_A 190 ACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNERVGN 269 (412)
T ss_dssp SSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCEEE
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHHHHhccCCcEEEEEecccccCCCCcceEE
Confidence 999999999987 457899999999999999997532 21 111 11 1123488899999999988 799
Q ss_pred EEE---ecCCCCcccceecCCCccccccccCcchhHHHHHHHHHHHH------HHhHHHHHHHHHHHHHHHHHHHhhccC
Q psy15216 208 LYI---RRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLA------RIEMKEELKRILFLQKRLYNGLMESIE 278 (2602)
Q Consensus 208 l~~---~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~------~~~~~~~~~~~~~l~~~l~~~L~~~~~ 278 (2602)
+++ ++++++.+...... ......++++.....++.++|+.. ..++++..++++++++++.+.|.+ +.
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~ 345 (412)
T 1ajs_A 270 LTVVAKEPDSILRVLSQMQK---IVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEA-LK 345 (412)
T ss_dssp EEEECSSHHHHHHHHHHHHH---HHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TT
T ss_pred EEEecCCHHHHHHHHHHHHH---HHhcccCCCChHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-hC
Confidence 999 66532222111100 001122345666777777788733 346788899999999999999987 32
Q ss_pred ---ceEEeCCCCCCCCceEEEEEcccChhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCC
Q psy15216 279 ---EIYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRF 353 (2602)
Q Consensus 279 ---g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~ 353 (2602)
++.+..+... .+.+...+...+...+ +||.+++ .+||+++.
T Consensus 346 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~gv~v~~---------------------------~~Ris~~~- 391 (412)
T 1ajs_A 346 TPGTWNHITDQIG------MFSFTGLNPKQVEYLINQKHIYLLP---------------------------SGRINMCG- 391 (412)
T ss_dssp CSSCCHHHHHCCS------SEEECCCCHHHHHHHHHTTCEECCT---------------------------TSEEEGGG-
T ss_pred CCCCeeEEcCCCc------eEEEeCCCHHHHHHHHHhCCEEecC---------------------------CcEEEeee-
Confidence 2444322111 1223333333333333 6887762 26999984
Q ss_pred CCHHHHHHHHHHHHhh
Q psy15216 354 TTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 354 ~t~edid~li~~L~~~ 369 (2602)
.+++++++++++|++.
T Consensus 392 ~~~~~i~~~~~~l~~~ 407 (412)
T 1ajs_A 392 LTTKNLDYVATSIHEA 407 (412)
T ss_dssp CCTTTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 4889999999999864
|
| >2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.1e-19 Score=228.30 Aligned_cols=226 Identities=16% Similarity=0.127 Sum_probs=153.2
Q ss_pred eeCHHHHHHHHHHHHHHHHHHhhcCccceEEEEEcCC-CCHH--HH--HHHHH--------H----HHHcCCceEEEech
Q psy15216 739 IKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAY-FNDI--QR--QFTKN--------A----AKLAGLNVLRLLNE 801 (2602)
Q Consensus 739 ~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~-f~~~--qr--~~~~~--------A----a~~AGl~~~~li~E 801 (2602)
.+++..+++.+ +.|++ +.. .+.+ .++|+++|.. |... || +++++ + ++.++++.+.++.|
T Consensus 73 ~~~~~~l~~i~-~aL~~-~~~-~~~~-~~lv~glP~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~e 148 (320)
T 2zgy_A 73 QYSDVNVVAVH-HALLT-SGL-PVSE-VDIVCTLPLTEYYDRNNQPNTENIERKKANFRKKITLNGGDTFTIKDVKVMPE 148 (320)
T ss_dssp GGSHHHHHHHH-HHHHH-HSC-CSCE-EEEEEEECHHHHBCTTSSBCHHHHHHHHHHTTSCEEETTBCCCEEEEEEEEES
T ss_pred cchHHHHHHHH-HHHHH-cCC-CCce-EEEEEcCCHHHHccCCCcccHHHHHHHHHhhcCcEecCCCcEEEEEEEEEecC
Confidence 56777777654 55543 211 1222 4699999987 6541 22 22221 1 34456788999999
Q ss_pred hHHHHHHhhhccCcccceEEEEEeCCceEEEEEEEEECCEEEEEEEecCCCCcchHHHHHHHHHHHHHHhhccCCHHHHH
Q psy15216 802 PTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLSYKDVN 881 (2602)
Q Consensus 802 PtAAAl~y~~~~~~~~~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~ 881 (2602)
|.||+++|... ...+..++|+|+||||+|+++++ ++.+.+.+..++.++||.+||+.|.+++.++ ... .+
T Consensus 149 ~~aa~~~~~~~-~~~~~~~~vvDiGggttd~~v~~--~g~~~v~~~~~~~~lGg~~~~~~I~~~l~~~-~~~-i~----- 218 (320)
T 2zgy_A 149 SIPAGYEVLQE-LDELDSLLIIDLGGTTLDISQVM--GKLSGISKIYGDSSLGVSLVTSAVKDALSLA-RTK-GS----- 218 (320)
T ss_dssp SHHHHHHHHHH-SCTTCEEEEEEECSSCEEEEEEE--GGGCCEEEEEEECSCCTHHHHHHHHHHTTCC-SBG-GG-----
T ss_pred cHHHHHhhhcc-ccCCCCEEEEEcCCCeEEEEEEe--CCeeEEeeecCCccccHHHHHHHHHHHHHHc-CCC-CC-----
Confidence 99999988643 23467899999999999999997 5556677778888999999999999988643 111 11
Q ss_pred HHHHHHHHH-HHHcccccceEEEEEecCCceEEEEeCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccceEEEecCcc
Q psy15216 882 ILMIKSREI-KELLSYQSSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGST 960 (2602)
Q Consensus 882 ~l~~~~e~~-K~~LS~~~~~~~~i~~~~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~a~~~~~~i~~V~LvGG~s 960 (2602)
...+|++ |..- . .......++..-+++++.+++++.++++.+.|.+.+++. .+++.|+|+||+|
T Consensus 219 --~~~ae~~lk~~~-~--------~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~i~~~i~~~----~~~~~vvl~GGga 283 (320)
T 2zgy_A 219 --SYLADDIIIHRK-D--------NNYLKQRINDENKISIVTEAMNEALRKLEQRVLNTLNEF----SGYTHVMVIGGGA 283 (320)
T ss_dssp --HHHHHHHHHTTT-C--------HHHHHHHSSSSCTHHHHHHHHHHHHHHHHHHHHHHHTTC----CCCCEEEEESTTH
T ss_pred --HHHHHHHHHHhh-h--------hhcccceecCchhhHHHHHHHHHHHHHHHHHHHHHHHhh----cCCCeEEEECChH
Confidence 1234444 3320 0 000000000011456666777777777777777766552 5789999999999
Q ss_pred chHHHHHHHHhhccC---cccCcCCcchHhHHHHHHHh
Q psy15216 961 RMKHIHEGVSNFFKT---TLLTSIDPDKAVVFGAAIQA 995 (2602)
Q Consensus 961 r~P~v~~~l~~~f~~---~~~~~~~p~~aVa~GAa~~a 995 (2602)
++ +++.|++.|+. ++..+.||++|+|+||++++
T Consensus 284 ~l--l~~~l~~~~~~~~~~~~~~~~P~~a~A~G~~~~~ 319 (320)
T 2zgy_A 284 EL--ICDAVKKHTQIRDERFFKTNNSQYDLVNGMYLIG 319 (320)
T ss_dssp HH--HHHHHHHTSCCCGGGEECCSCGGGHHHHHHHHHH
T ss_pred HH--HHHHHHHHhCCCCCceeeCCCcHHHHHHHHHHhc
Confidence 98 99999999987 57788999999999999876
|
| >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=9e-19 Score=228.76 Aligned_cols=307 Identities=17% Similarity=0.174 Sum_probs=212.5
Q ss_pred CCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccc--c
Q psy15216 7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYK--K 84 (2602)
Q Consensus 7 ~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~--~ 84 (2602)
++.++.+.+++.+.+... .+... .+ ..+..+++++++++++| ++++++++|+++|+.+++.++..... +
T Consensus 55 g~~~~~v~~a~~~~~~~~-~~~~~-~~-----~~~~~~~l~~~la~~~g--~~~v~~~~gg~~a~~~al~~~~~~~~~~~ 125 (397)
T 2ord_A 55 GHSHPRLVEAIKDQAEKL-IHCSN-LF-----WNRPQMELAELLSKNTF--GGKVFFANTGTEANEAAIKIARKYGKKKS 125 (397)
T ss_dssp CBTCHHHHHHHHHHHHHC-SCCCT-TS-----EEHHHHHHHHHHHHTTT--SCEEEEESSHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHhc-ccCcc-cc-----CCHHHHHHHHHHHHhcC--CCeEEEeCCHHHHHHHHHHHHHHHhhcCC
Confidence 346899999999988753 22211 11 12467889999999998 46899999999999999988751000 0
Q ss_pred C-CCEEEEcCCCCcccHH-HHHHHHhCCcE------------EEEeccCCCCccChHHHHhhccCCceEEEEecccCccc
Q psy15216 85 R-GKHIITVQTEHKSVLD-SIRKLENDGFR------------VTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIG 150 (2602)
Q Consensus 85 ~-gd~Vlv~~~~~~s~~~-~~~~~~~~G~~------------v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG 150 (2602)
+ ++.|+++++.|++... ++... |.+ +..++. .|+++|++++++++++|++++++||||
T Consensus 126 ~~~~~vi~~~~~yh~~~~~~~~~~---g~~~~~~~~~p~~~~~~~~~~-----~d~~~l~~~l~~~~~~v~~~~~~nptG 197 (397)
T 2ord_A 126 EKKYRILSAHNSFHGRTLGSLTAT---GQPKYQKPFEPLVPGFEYFEF-----NNVEDLRRKMSEDVCAVFLEPIQGESG 197 (397)
T ss_dssp TTCCEEEEEBTCCCCSSHHHHHHS---BCHHHHGGGCSCCTTEEEECT-----TCHHHHHHHCCTTEEEEEECSEECTTT
T ss_pred CCCceEEEEcCCcCCCchhhhhcc---CChhhccccCCCCCCeeEecC-----CCHHHHHHHhhcCeEEEEEecccCCCC
Confidence 4 4788888888866433 44443 443 566654 289999999999999999999999999
Q ss_pred c-cc---cHHHHHHHHHhcCCEEEEecccc-cccc--cccCCCC--CccEEEeccccccCC-CCcEEEEEecCCCCcccc
Q psy15216 151 V-IQ---PILEIGELCRSKGVIFHCDAAQA-VGKI--DINIQNY--KVDLMSFSAHKIYGP-KGIGALYIRRNPRTRIEA 220 (2602)
Q Consensus 151 ~-~~---~l~~I~~la~~~g~~livD~a~a-~g~~--~~dl~~~--~~D~~~~S~~K~~Gp-~G~G~l~~~~~~~~~l~~ 220 (2602)
. ++ ++++|.++|++||+++|+|++|+ ++.. ++.+..+ .+|++ |++|.+|+ .++|+++++++++ .+.+
T Consensus 198 ~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~G~r~G~~~~~~~~~-~l~~ 274 (397)
T 2ord_A 198 IVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLFAYQKYGVVPDVL--TTAKGLGGGVPIGAVIVNERAN-VLEP 274 (397)
T ss_dssp CEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE--EECGGGGTTSCCEEEEECSTTC-CCCT
T ss_pred cccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCccchhhhhhCCCCCee--eeccccCCCcCeEEEEEchHhc-ccCC
Confidence 9 44 58889999999999999999997 2211 1211212 36766 66897762 2389999998876 5543
Q ss_pred eecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhc---cCceEEeCCCCCCCCceEEEE
Q psy15216 221 QIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMES---IEEIYINGDMNNRIPHNLNIS 297 (2602)
Q Consensus 221 ~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~---~~g~~l~~~~~~~~~~~~~~~ 297 (2602)
... ....+.+....+++.++|+.... ++..++.+++++++.+.|.+. ++.+....+ ...++.+.
T Consensus 275 ~~~-------~~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~----~g~~~~~~ 341 (397)
T 2ord_A 275 GDH-------GTTFGGNPLACRAGVTVIKELTK--EGFLEEVEEKGNYLMKKLQEMKEEYDVVADVRG----MGLMIGIQ 341 (397)
T ss_dssp TSS-------CCSSTTCHHHHHHHHHHHHHHTS--TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEE----ETTEEEEE
T ss_pred CCc-------CCCCCCCHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHHHHHhCCceEEEEE----EeEEEEEE
Confidence 211 11235566777777778875433 467778888888888888662 232221111 12344455
Q ss_pred Ecc-cChhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 298 FNF-IEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 298 ~~~-~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
++. .+..++...| +||.++++. .+++|++++..++++|+++++++|++.
T Consensus 342 ~~~~~~~~~l~~~l~~~gi~v~~~~-----------------------~~~iRis~~~~~~~e~i~~~~~~l~~~ 393 (397)
T 2ord_A 342 FREEVSNREVATKCFENKLLVVPAG-----------------------NNTIRFLPPLTVEYGEIDLAVETLKKV 393 (397)
T ss_dssp ECTTSCHHHHHHHHHHTTEECEEET-----------------------TTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred ECChHHHHHHHHHHHHCCCEEccCC-----------------------CCEEEEECCcCCCHHHHHHHHHHHHHH
Confidence 553 3456676666 799888652 278999998889999999999999863
|
| >4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=4.5e-19 Score=233.27 Aligned_cols=310 Identities=14% Similarity=0.089 Sum_probs=212.8
Q ss_pred CCCCCHHHHHHHHHHHhhc--cCCCCCccchhHHHHHHHHHHHHHHHHHHhCC------CCC--cEEEeCCHHHHHHHHH
Q psy15216 1402 TTPIDPRVVDKMIPYLRVQ--FGNPASRNHIYGWTAEKAIEKARNEVAQLIYA------DPR--EIIWTSGATESNNLAI 1471 (2602)
Q Consensus 1402 ~~~~~~~v~eal~~~l~~~--~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~------~~~--~iv~t~gaT~al~~al 1471 (2602)
..+.++.+.+++.+.++.. ..++.. ....++|+.++++++. +++ +|++|+|+|+|++.++
T Consensus 65 ~~~~~~~v~~a~~~~~~~~~~~~Y~~~----------~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~t~al~~~~ 134 (420)
T 4f4e_A 65 KIPLLRAVRDAEKARVEAGLPRGYLPI----------DGIAAYDASVQKLLLGDDSPLIAAGRVVTAQALGGTGALKIGA 134 (420)
T ss_dssp CCCCCHHHHHHHHHHHHTCCCCCCCCT----------TCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHH
T ss_pred CccCcHHHHHHHHHHhccCCCCCCCCC----------CCcHHHHHHHHHHhcCCCccccccCceEEEECCccHHHHHHHH
Confidence 4466689999999988752 112211 1246778888888743 466 8999999999999995
Q ss_pred H--hhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEecc--CCCCCcChhHHHhhcc---CCceEEEEeccccc
Q psy15216 1472 K--GAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP--KNNGLITLSQLEEKIC---SDTILVSVMLVNNE 1544 (2602)
Q Consensus 1472 ~--~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~--~~~~~id~d~l~~~i~---~~t~lv~l~~~~n~ 1544 (2602)
. ++. ++||+|++++|.|+++...++.+ |++++.++. +.++.+|+++++++++ ++++++++++|+||
T Consensus 135 ~~~~~~----~~gd~Vlv~~p~~~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~NP 207 (420)
T 4f4e_A 135 DFLRTL----NPKAKVAISDPSWENHRALFDMA---GFEVVAYPYYDAKTNGVNFDGMLAALNGYEPGTIVVLHACCHNP 207 (420)
T ss_dssp HHHHHH----CTTCCEEEEESCCHHHHHHHHHT---TCCEEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTT
T ss_pred HHHHHh----CCCCEEEEeCCCcHhHHHHHHHc---CCeEEEeeeeccccCccCHHHHHHHHHhCCCCCEEEEeCCCCCC
Confidence 4 444 79999999999999987766655 999999998 3467899999999998 78899999999999
Q ss_pred cccccC---hHHHHHHhhhcCCEEEEecccccCccc-----cc---C-CCCCccEEEEccccccCCCc--eEEEEEec--
Q psy15216 1545 IGVIQP---ILEIGELCRSKGVIFHCDAAQAVGKID-----IN---I-QNYKVDLMSFSAHKIYGPKG--IGALYIRR-- 1608 (2602)
Q Consensus 1545 tG~~~~---l~~I~~ia~~~gi~vivD~a~~~g~~~-----~~---l-~~~~~D~~v~S~~K~~gp~G--~G~l~~~~-- 1608 (2602)
||.+++ +++|+++|++||+++|+|++|+..... .. + ...+..+++.|+||.+|++| +||+++..
T Consensus 208 tG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~~~~~ 287 (420)
T 4f4e_A 208 TGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAAANLNVFVSSSFSKSFSLYGERVGALSIITDS 287 (420)
T ss_dssp TCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTCGGGCEEEEEEECSS
T ss_pred CCCCCCHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHHhcCCCEEEEEeCCccCcCcCCCcEEEEEEcCC
Confidence 999988 568888999999999999998543211 11 1 12345688899999999888 89987632
Q ss_pred -CCCCccccccccCCccccCCCCCcchhHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHhhcC--CcEEEe
Q psy15216 1609 -NPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRL------ARIEMKEELKRILFLQKRLYNGLMESI--EEIYIN 1679 (2602)
Q Consensus 1609 -~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~------~~~~~~~~~~~~~~l~~~l~~~L~~~~--~gl~i~ 1679 (2602)
+.++.+...... ..+....+++.....++..++.. ....+++.+++++++++++.+.|.+.. +++.+.
T Consensus 288 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 364 (420)
T 4f4e_A 288 KDEAARVLSQLKR---VIRTNYSNPPTHGGAIVAAVLASPELRASWVQELGEMRDRIRAMRNGLVERLKAAGIERDFSFI 364 (420)
T ss_dssp HHHHHHHHHHHHH---HHHTTTSSCCSHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCTHH
T ss_pred HHHHHHHHHHHHH---HHhcccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceeE
Confidence 222111111000 00011223445555555555552 134578888999999999999998732 244333
Q ss_pred CCCCCCCCceEEEEEecCCcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHH
Q psy15216 1680 GDMNNRIPHNLNISFNFIEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDF 1757 (2602)
Q Consensus 1680 ~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~ 1757 (2602)
.+. ...+.+...+...+...+ +||.+.++ .|+|++.. +.+++++
T Consensus 365 ~~~------~g~~~~~~~~~~~~~~~l~~~gI~v~~~---------------------------~Ris~~~~-~~~~i~~ 410 (420)
T 4f4e_A 365 NAQ------RGMFSYSGLTSAQVDRLREEFGIYAVST---------------------------GRICVAAL-NTRNLDV 410 (420)
T ss_dssp HHS------CSSEEECCCCHHHHHHHHHHHCEECCTT---------------------------SEEEGGGC-CTTTHHH
T ss_pred CCC------ccEEEEeCCCHHHHHHHHHhCCEEecCC---------------------------CeEEEecC-CHHHHHH
Confidence 221 122444444444444444 68887631 29998754 5577999
Q ss_pred HHHHHHHh
Q psy15216 1758 TIKLLKMK 1765 (2602)
Q Consensus 1758 li~~L~~~ 1765 (2602)
++++|++.
T Consensus 411 ~~~~l~~~ 418 (420)
T 4f4e_A 411 VANAIAAV 418 (420)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999863
|
| >2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.1e-19 Score=237.29 Aligned_cols=311 Identities=13% Similarity=0.048 Sum_probs=214.1
Q ss_pred CCCCHHHHHHHHHHHhhc--cCCCCCccchhHHHHHHHHHHHHHHHHHHh-CC--CCCcEEE--eCCHHHHHHHHHHhhh
Q psy15216 1403 TPIDPRVVDKMIPYLRVQ--FGNPASRNHIYGWTAEKAIEKARNEVAQLI-YA--DPREIIW--TSGATESNNLAIKGAA 1475 (2602)
Q Consensus 1403 ~~~~~~v~eal~~~l~~~--~~np~~~~~~~~~~~~~~~~~lr~~ia~~~-g~--~~~~iv~--t~gaT~al~~al~~l~ 1475 (2602)
.+.++.+.+++.+.++.. .+++.. ....++|+++++++ +. ++++|++ |+|+++|+++++.++.
T Consensus 43 ~~~~~~v~~a~~~~~~~~~~~~y~~~----------~g~~~lr~~la~~~~~~~~~~~~v~~~~~~g~~~a~~~~~~~~~ 112 (394)
T 2ay1_A 43 TPIMRAVHAAEQRMLETETTKTYAGL----------SGEPEFQKAMGELILGDGLKSETTATLATVGGTGALRQALELAR 112 (394)
T ss_dssp CCCCHHHHHHHHHHHHHCCCCCCCCS----------SCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHHHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHhcCCcccCCCCCC----------CCcHHHHHHHHHHHhCCCCCcccEEEEecCCchhHHHHHHHHHH
Confidence 456788999998877541 122211 12467899999987 55 6788999 9999999999998875
Q ss_pred hhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccC--CCCCcChhHHHhhccC---CceEEEEeccccccccccC
Q psy15216 1476 HFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK--NNGLITLSQLEEKICS---DTILVSVMLVNNEIGVIQP 1550 (2602)
Q Consensus 1476 ~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~--~~~~id~d~l~~~i~~---~t~lv~l~~~~n~tG~~~~ 1550 (2602)
. +.+||+|+++.|+|+++...+... |++++.++.+ .++.+|++++++++++ +++++++++++||||.++|
T Consensus 113 ~--~~~gd~vl~~~p~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~nptG~~~~ 187 (394)
T 2ay1_A 113 M--ANPDLRVFVSDPTWPNHVSIMNFM---GLPVQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLLHGCCHNPTGANLT 187 (394)
T ss_dssp H--HCTTCCEEEEESCCHHHHHHHHHH---TCCEEEEECEETTTTEECHHHHHHHHHTCCTTCEEEEESSSCTTTCCCCC
T ss_pred h--cCCCCEEEEcCCCChhHHHHHHHc---CCceEEEecccccCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCC
Confidence 1 248999999999999988776665 8899999875 4677999999999975 3678888999999999998
Q ss_pred ---hHHHHHHhhhcCCEEEEecccccCcc-------ccc-CCCCC-ccEEEEccccccCCCc--eEEEEE---ecCCCCc
Q psy15216 1551 ---ILEIGELCRSKGVIFHCDAAQAVGKI-------DIN-IQNYK-VDLMSFSAHKIYGPKG--IGALYI---RRNPRTR 1613 (2602)
Q Consensus 1551 ---l~~I~~ia~~~gi~vivD~a~~~g~~-------~~~-l~~~~-~D~~v~S~~K~~gp~G--~G~l~~---~~~~~~~ 1613 (2602)
+++|.++|++||+++|+|++|+.... ++. +...+ ..+++.|+||.+|++| +||+++ ++++++.
T Consensus 188 ~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~ 267 (394)
T 2ay1_A 188 LDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIYRERTGCLLALCADAATREL 267 (394)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCGGGCEEEEEEECSSHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHHHHhhcCCCEEEEEeccCCCcCcCCccceEEEEeCCHHHHHH
Confidence 55789999999999999999975322 121 22223 2467889999988888 699998 4433222
Q ss_pred cccccccCCccccCCCCCcchhHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHhhcCC--cEEEeCCCCCC
Q psy15216 1614 IEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLA------RIEMKEELKRILFLQKRLYNGLMESIE--EIYINGDMNNR 1685 (2602)
Q Consensus 1614 l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~------~~~~~~~~~~~~~l~~~l~~~L~~~~~--gl~i~~~~~~~ 1685 (2602)
+...... ......++++...+.++.++|+.. ..++++..++++++++++.+.|.+..+ ++.+..+.
T Consensus 268 l~~~~~~---~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~--- 341 (394)
T 2ay1_A 268 AQGAMAF---LNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRDLSGSDRFGFVAEH--- 341 (394)
T ss_dssp HHHHHHH---HHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTTHHHHC---
T ss_pred HHHHHHH---HHhhhcCCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeeEEcCC---
Confidence 2211100 001112334555666666777632 345778888899999999999876211 23322111
Q ss_pred CCceEEEEEecCCcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHH
Q psy15216 1686 IPHNLNISFNFIEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK 1763 (2602)
Q Consensus 1686 ~~~~~~~~~~~~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~ 1763 (2602)
...+.+...+...+...+ +||.+++ .+|++++ +++++++++++++|+
T Consensus 342 ---~g~~~~~~~~~~~~~~~l~~~gi~v~~---------------------------~~Ris~~-~~~~~~i~~~~~~l~ 390 (394)
T 2ay1_A 342 ---RGMFSRLGATPEQVKRIKEEFGIYMVG---------------------------DSRINIA-GLNDNTIPILARAII 390 (394)
T ss_dssp ---CSSEEECCCCHHHHHHHHHHHCEECCT---------------------------TCEEEGG-GCCTTTHHHHHHHHH
T ss_pred ---ceEEEeeCCCHHHHHHHHHhCCEEecC---------------------------CCeEEee-cCCHhhHHHHHHHHH
Confidence 111233333333443333 6888752 2699988 478999999999998
Q ss_pred Hh
Q psy15216 1764 MK 1765 (2602)
Q Consensus 1764 ~~ 1765 (2602)
+.
T Consensus 391 ~~ 392 (394)
T 2ay1_A 391 EV 392 (394)
T ss_dssp HH
T ss_pred Hc
Confidence 63
|
| >3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-18 Score=226.84 Aligned_cols=308 Identities=14% Similarity=0.132 Sum_probs=197.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHH-HHHhCCcEE
Q psy15216 1431 YGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIR-KLENDGFRV 1509 (2602)
Q Consensus 1431 ~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~-~~~~~G~~v 1509 (2602)
+++.......++++++++++|.+ ..++++|+++|+..++.++. ++||+|+++++.|+++...+. .+...|+++
T Consensus 76 y~r~~~p~~~~le~~lA~l~g~~--~~v~~~sG~~Ai~~al~al~----~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~ 149 (430)
T 3ri6_A 76 YSRSSNPTVEDLEQRLKNLTGAL--GVLALGSGMAAISTAILTLA----RAGDSVVTTDRLFGHTLSLFQKTLPSFGIEV 149 (430)
T ss_dssp ----CCHHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHHC----CTTCEEEEETTCCHHHHHHHHTHHHHTTCEE
T ss_pred ccCCCCHHHHHHHHHHHHHHCCC--cEEEECCHHHHHHHHHHHHh----CCCCEEEEcCCCchhHHHHHHHHHHHcCCEE
Confidence 33333456789999999999975 46777788999999999886 899999999999999887665 455679999
Q ss_pred EEeccCCCCCcChhHHHhhccCCceEEEEeccccccccccChHHHHHHhhhcCCEEEEecccccCcccccCCCCCccEEE
Q psy15216 1510 TYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMS 1589 (2602)
Q Consensus 1510 ~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v 1589 (2602)
++++.+ |+++|+++++++|++|++++|+||+|.+.|+++|.++|++||+++|+|++++.+.. .+...+++|+++
T Consensus 150 ~~v~~~-----d~~~l~~ai~~~t~~v~~e~p~NptG~~~dl~~i~~la~~~g~~livD~a~~~~~~-~~~~~~g~div~ 223 (430)
T 3ri6_A 150 RFVDVM-----DSLAVEHACDETTKLLFLETISNPQLQVADLEALSKVVHAKGIPLVVDTTMTPPYL-LEAKRLGVDIEV 223 (430)
T ss_dssp EEECTT-----CHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTSCTTT-CCGGGGTCSEEE
T ss_pred EEeCCC-----CHHHHHHhhCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCccccc-CChHHcCCEEEE
Confidence 999875 89999999999999999999999999999999999999999999999999998765 344456899999
Q ss_pred EccccccCCCc---eEEEEEecCC-CC---ccccc--cccCC--------ccccCCCCCcchhHHHHHHHHHHHHHHHHH
Q psy15216 1590 FSAHKIYGPKG---IGALYIRRNP-RT---RIEAQ--IHGGG--------HEYGLRSGTLATHQIVGMGEAFRLARIEMK 1652 (2602)
Q Consensus 1590 ~S~~K~~gp~G---~G~l~~~~~~-~~---~l~~~--~~g~~--------~~~~~~~gt~~~~~~~al~~aL~~~~~~~~ 1652 (2602)
.|++|++|++| .|+++.+.+. .. +...+ .+|.. .......++.+....+.+..+++ .+.
T Consensus 224 ~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~~~~i~~~~~~~~~~~g~~~~~~~a~l~l~~l~----~l~ 299 (430)
T 3ri6_A 224 LSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKEVFQNLGPSLSPHNAYLQSLGLE----TMA 299 (430)
T ss_dssp EECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHH----HHH
T ss_pred ECCcccccCCCCceEEEEEECChHHhhhccchhhhhhhhchhhHHHHHHHHHHHhcCCCCCHHHHHHHHhhhh----hHH
Confidence 99999766543 3555544321 10 00000 00000 00000112222222221112222 245
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCcEE-EeCCCCCCCCc----------eE-EEEEecCC---cHHHHHhc--CCEEEcccc
Q psy15216 1653 EELKRILFLQKRLYNGLMESIEEIY-INGDMNNRIPH----------NL-NISFNFIE---GESLLMAI--KDIAVSSGS 1715 (2602)
Q Consensus 1653 ~~~~~~~~l~~~l~~~L~~~~~gl~-i~~~~~~~~~~----------~~-~~~~~~~~---~~~~~~~L--~gI~v~~g~ 1715 (2602)
...++..+++.++.+.|.+ .|++. +..|.-...|. +. .++|...+ ...++..| .++.++.|.
T Consensus 300 ~r~~~~~~na~~la~~L~~-~p~v~~V~~P~l~~~p~~~~~~~~~g~Gg~~lsf~l~~~~~~~~~~~~l~~~~~~~s~G~ 378 (430)
T 3ri6_A 300 LRIERSCQNAQELAHWLLS-IPQVKCVNHPSLPDSPFYAIAKRQFRYAGSILTFELESKEASYRFMDALKLIRRATNIHD 378 (430)
T ss_dssp HHHHHHHHHHHHHHHHHTT-CTTCEEEECTTSTTSTTHHHHHHHCSSCCSEEEEECSSHHHHHHHHHHCSSSEECSCCSC
T ss_pred HHHHHHHHHHHHHHHHHhC-CCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECCHHHHHHHHHhCCcceecCCCCC
Confidence 5666778888889999987 67765 33222111111 22 44444322 34566666 456666666
Q ss_pred ccCCCCCChhHHH--------HHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHH
Q psy15216 1716 ACTSASLEPSYVL--------RALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK 1763 (2602)
Q Consensus 1716 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~ 1763 (2602)
.++.-..+..... ...|+. .+.||||++... ++.+++.|+
T Consensus 379 ~~sli~~p~~~~h~~~~~~~~~~~g~~----~~liRlsvG~E~----~~dl~~dl~ 426 (430)
T 3ri6_A 379 NKSLILSPYHVIYALNSHEERLKLEIS----PAMMRLSVGIEE----IEDLKEDIL 426 (430)
T ss_dssp SSCEEECTGGGC---------CGGGSC----TTEEEEECCSSC----HHHHHHHHH
T ss_pred CCceeeCCcccccccCCHHHHHhcCCC----CCeEEEEeccCC----HHHHHHHHH
Confidence 5542100011111 123333 489999999754 444444444
|
| >2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.80 E-value=8.8e-19 Score=242.34 Aligned_cols=230 Identities=16% Similarity=0.100 Sum_probs=179.9
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCC
Q psy15216 41 KAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN 120 (2602)
Q Consensus 41 ~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~ 120 (2602)
..+.++++.+++++|.+ +.+++++|+++|+..++.++. ++||+|+++.++|+++...+... |+++++++++.
T Consensus 205 g~v~~~ee~la~l~G~d-~~i~~~~Gtt~a~~~~i~al~----~~GD~Vlv~~~~h~s~~~~~~~~---G~~~v~v~~~~ 276 (755)
T 2vyc_A 205 GAFGESEKYAARVFGAD-RSWSVVVGTSGSNRTIMQACM----TDNDVVVVDRNCHKSIEQGLMLT---GAKPVYMVPSR 276 (755)
T ss_dssp HHHHHHHHHHHHHHTCS-EEEEESSHHHHHHHHHHHHHC----CTTCEEEEESSCCHHHHHHHHHH---CCEEEEECCCB
T ss_pred cHHHHHHHHHHHHhCCC-ceEEECCcHHHHHHHHHHHhc----CCCCEEEECCCchHHHHHHHHHc---CCEEEEEeCCC
Confidence 35678899999999986 468889998999999999998 89999999999999998887765 99999998764
Q ss_pred C-----Ccc-----ChHHHHhhccC--Cce--------EEEEecccCcccccccHHHHHHHHHhcCCEEEEecccccccc
Q psy15216 121 N-----GLI-----TLSQLEEKICS--DTI--------LVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKI 180 (2602)
Q Consensus 121 ~-----~~l-----d~e~l~~~i~~--~tk--------lv~i~~~~npTG~~~~l~~I~~la~~~g~~livD~a~a~g~~ 180 (2602)
+ +.+ |+++|++++++ +++ +++++++ |++|.+.|+++|+++|++||+++++|+||+.+..
T Consensus 277 ~~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~dl~~I~~ia~~~~~~livDeA~~~~~~ 355 (755)
T 2vyc_A 277 NRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGYAR 355 (755)
T ss_dssp CTTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEECHHHHHHHHTTTCSEEEEECTTCTTGG
T ss_pred CccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceecCHHHHHHHHHHcCCEEEEECcCchhcc
Confidence 3 235 99999999963 454 9999998 7999999999999999999999999999975321
Q ss_pred --cc--cCCC-CC--ccE------EEecccc-ccCCCCcEEEEEecC--CCC--cccceecCCCccccccccCcchhHHH
Q psy15216 181 --DI--NIQN-YK--VDL------MSFSAHK-IYGPKGIGALYIRRN--PRT--RIEAQIHGGGHEYGLRSGTLATHQIV 242 (2602)
Q Consensus 181 --~~--dl~~-~~--~D~------~~~S~~K-~~Gp~G~G~l~~~~~--~~~--~l~~~~~g~~~~~~~~~gt~~~~~~~ 242 (2602)
+. +... .+ +|+ +++|+|| +.|+.|.|+++++++ .++ .+.... ..+..++|++..++
T Consensus 356 ~~~~~~~~~~~~g~~aD~~~~~~iv~~S~hK~L~g~~~g~~i~~~~~~~~i~~~~~~~~~------~~~~s~sp~~~~ia 429 (755)
T 2vyc_A 356 FNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAINFSRFNQAY------MMHATTSPLYAICA 429 (755)
T ss_dssp GCGGGTTSSSSCSCCCCCSSBEEEEEEETTTSSSCCTTCEEEEEECCBTCCCHHHHHHHH------HHTSCSSCCHHHHH
T ss_pred cCcccCCcchhcCCcCCccCCCeEEEECccccccCcCCeeeeeecCcccccCHHHHHHHH------HHhCCCCHHHHHHH
Confidence 10 1111 34 465 8999999 556777899999876 222 111111 23456899999999
Q ss_pred HHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHhhccCc---------eEEeCCC
Q psy15216 243 GMGEAFRLARI-EMKEELKRILFLQKRLYNGLMESIEE---------IYINGDM 286 (2602)
Q Consensus 243 al~~al~~~~~-~~~~~~~~~~~l~~~l~~~L~~~~~g---------~~l~~~~ 286 (2602)
++.+|+++... +.++..++..+++++++++|.+ +++ ++++++.
T Consensus 430 al~aA~~~l~~~gg~~~~~~~~~~a~~~r~~L~~-l~~~~~~~~~~~~~~~~~~ 482 (755)
T 2vyc_A 430 SNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMAR-LYKEFTADGSWFFKPWNKE 482 (755)
T ss_dssp HHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHTTTCCCCEESSCS
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-ccccccccccceeeccCch
Confidence 99999986543 3577888999999999999987 666 7777643
|
| >2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-18 Score=241.18 Aligned_cols=223 Identities=16% Similarity=0.101 Sum_probs=175.2
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCC
Q psy15216 1437 KAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN 1516 (2602)
Q Consensus 1437 ~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~ 1516 (2602)
..+.++++.+++++|++ +.+++++|+++|++.++.++. ++||+|+++.++|+++...+... |+++++++.+.
T Consensus 205 g~v~~~ee~la~l~G~d-~~i~~~~Gtt~a~~~~i~al~----~~GD~Vlv~~~~h~s~~~~~~~~---G~~~v~v~~~~ 276 (755)
T 2vyc_A 205 GAFGESEKYAARVFGAD-RSWSVVVGTSGSNRTIMQACM----TDNDVVVVDRNCHKSIEQGLMLT---GAKPVYMVPSR 276 (755)
T ss_dssp HHHHHHHHHHHHHHTCS-EEEEESSHHHHHHHHHHHHHC----CTTCEEEEESSCCHHHHHHHHHH---CCEEEEECCCB
T ss_pred cHHHHHHHHHHHHhCCC-ceEEECCcHHHHHHHHHHHhc----CCCCEEEECCCchHHHHHHHHHc---CCEEEEEeCCC
Confidence 35678899999999986 457788888899999999987 89999999999999998887665 99999998764
Q ss_pred C-----CCc-----ChhHHHhhccC--Cce--------EEEEeccccccccccChHHHHHHhhhcCCEEEEecccccCcc
Q psy15216 1517 N-----GLI-----TLSQLEEKICS--DTI--------LVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKI 1576 (2602)
Q Consensus 1517 ~-----~~i-----d~d~l~~~i~~--~t~--------lv~l~~~~n~tG~~~~l~~I~~ia~~~gi~vivD~a~~~g~~ 1576 (2602)
+ +.+ |+++|+++|++ +++ +++++++ |++|.+.|+++|+++|++||+++++|+||+.+..
T Consensus 277 ~~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~dl~~I~~ia~~~~~~livDeA~~~~~~ 355 (755)
T 2vyc_A 277 NRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGYAR 355 (755)
T ss_dssp CTTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEECHHHHHHHHTTTCSEEEEECTTCTTGG
T ss_pred CccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceecCHHHHHHHHHHcCCEEEEECcCchhcc
Confidence 3 235 99999999964 454 8999997 7999999999999999999999999999975321
Q ss_pred --cc--cCCC-CC--ccE------EEEcccc-ccCCCceEEEEEecC--CCCc--cccccccCCccccCCCCCcchhHHH
Q psy15216 1577 --DI--NIQN-YK--VDL------MSFSAHK-IYGPKGIGALYIRRN--PRTR--IEAQIHGGGHEYGLRSGTLATHQIV 1638 (2602)
Q Consensus 1577 --~~--~l~~-~~--~D~------~v~S~~K-~~gp~G~G~l~~~~~--~~~~--l~~~~~g~~~~~~~~~gt~~~~~~~ 1638 (2602)
+. +... .+ +|+ +++|+|| +.||+|.|+++++++ .+.. +... ...+.++++++..++
T Consensus 356 ~~~~~~~~~~~~g~~aD~~~~~~iv~~S~hK~L~g~~~g~~i~~~~~~~~i~~~~~~~~------~~~~~s~sp~~~~ia 429 (755)
T 2vyc_A 356 FNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAINFSRFNQA------YMMHATTSPLYAICA 429 (755)
T ss_dssp GCGGGTTSSSSCSCCCCCSSBEEEEEEETTTSSSCCTTCEEEEEECCBTCCCHHHHHHH------HHHTSCSSCCHHHHH
T ss_pred cCcccCCcchhcCCcCCccCCCeEEEECccccccCcCCeeeeeecCcccccCHHHHHHH------HHHhCCCCHHHHHHH
Confidence 10 1111 34 565 8999999 567887899999876 3321 1111 123556889999999
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcCCc
Q psy15216 1639 GMGEAFRLARI-EMKEELKRILFLQKRLYNGLMESIEE 1675 (2602)
Q Consensus 1639 al~~aL~~~~~-~~~~~~~~~~~l~~~l~~~L~~~~~g 1675 (2602)
++.+|++++.. +.++..++..+++++++++|.+ +++
T Consensus 430 al~aA~~~l~~~gg~~~~~~~~~~a~~~r~~L~~-l~~ 466 (755)
T 2vyc_A 430 SNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMAR-LYK 466 (755)
T ss_dssp HHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-ccc
Confidence 99999986543 2567888889999999999987 566
|
| >4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A | Back alignment and structure |
|---|
Probab=99.80 E-value=7.9e-19 Score=230.16 Aligned_cols=310 Identities=14% Similarity=0.138 Sum_probs=215.0
Q ss_pred CCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhccccc---ccC
Q psy15216 9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFY---KKR 85 (2602)
Q Consensus 9 ~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~---~~~ 85 (2602)
.++.+.+++.+.+.....++.. + ..+..+++++++++++|.+ ++++++|+++|+++++.++.... -++
T Consensus 56 ~~p~v~~a~~~~~~~~~~~~~~--~-----~~~~~~~l~~~la~~~~~~--~v~~~~gg~~a~~~al~~~~~~~~~~~~~ 126 (406)
T 4adb_A 56 AHPELREALNEQASKFWHTGNG--Y-----TNEPVLRLAKKLIDATFAD--RVFFCNSGAEANEAALKLARKFAHDRYGS 126 (406)
T ss_dssp TCHHHHHHHHHHHTTCSCCCTT--S-----CCHHHHHHHHHHHHHSSCS--EEEEESSHHHHHHHHHHHHHHHHHHHTCT
T ss_pred CCHHHHHHHHHHHHhcccccCC--c-----CCHHHHHHHHHHHhhCCCC--eEEEeCcHHHHHHHHHHHHHHHHHhcCCC
Confidence 4889999999988753322211 1 1235788999999999864 99999999999999999876100 005
Q ss_pred C-CEEEEcCCCCcccHHHHHHHHhC----------CcEEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccc-
Q psy15216 86 G-KHIITVQTEHKSVLDSIRKLEND----------GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQ- 153 (2602)
Q Consensus 86 g-d~Vlv~~~~~~s~~~~~~~~~~~----------G~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~- 153 (2602)
| |.|++.++.|+++...+..+... +..+..++. .|+++|++++++++++|+++ |+||||.++
T Consensus 127 g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~l~~~~~~v~~~-p~np~g~~~~ 200 (406)
T 4adb_A 127 HKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAY-----NDINSASALIDDSTCAVIVE-PIQGEGGVVP 200 (406)
T ss_dssp TCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECT-----TCHHHHHTTCSTTEEEEEEC-SEETTTTSEE
T ss_pred CCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCC-----CcHHHHHHHhcCCeEEEEEe-CCcCCCCCcc
Confidence 5 99999999999986665554110 023333332 48999999999999999999 899999776
Q ss_pred ----cHHHHHHHHHhcCCEEEEecccc-cccc--c--ccCCCCCccEEEeccccccCCCC--cEEEEEecCCCCccccee
Q psy15216 154 ----PILEIGELCRSKGVIFHCDAAQA-VGKI--D--INIQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQI 222 (2602)
Q Consensus 154 ----~l~~I~~la~~~g~~livD~a~a-~g~~--~--~dl~~~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~ 222 (2602)
++++|.++|++||+++|+|++|+ ++.. + ++.....+|++ ++||.+| +| +|++++++++++.+.+..
T Consensus 201 ~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~--t~sK~~~-~G~r~G~~~~~~~~~~~~~~~~ 277 (406)
T 4adb_A 201 ASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDLL--TTAKALG-GGFPVGALLATEECARVMTVGT 277 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE--EECGGGG-TTSCCEEEEECHHHHHTCCTTS
T ss_pred CCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhHHHHhcCCCCCEE--Eechhhc-CCCCeEEEEEcHHHHhhhccCC
Confidence 48899999999999999999996 3211 1 12223346777 5699777 45 899999988776665443
Q ss_pred cCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEccc-
Q psy15216 223 HGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI- 301 (2602)
Q Consensus 223 ~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~- 301 (2602)
.+ ...+.+.....++.++++.... ++..++.+++++++.+.|.+....+....... ..+.++.+.++..
T Consensus 278 ~~-------~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~g~~~~~~~~~~~ 347 (406)
T 4adb_A 278 HG-------TTYGGNPLASAVAGKVLELINT--PEMLNGVKQRHDWFVERLNTINHRYGLFSEVR-GLGLLIGCVLNADY 347 (406)
T ss_dssp SC-------CSSTTCHHHHHHHHHHHHHHSS--HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEE-EETTEEEEEECTTT
T ss_pred cC-------CCCCCCHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHHhCCCceEEE-EEEEEEEEEEeCCc
Confidence 21 1235666667767677774432 67778888888888888876211111110000 0123445555542
Q ss_pred --ChhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 302 --EGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 302 --~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
+..++...| +||.++++. .+++|++++..++++|+++++++|++.
T Consensus 348 ~~~~~~~~~~l~~~gi~v~~~~-----------------------~~~iRi~~~~~~~~e~i~~~~~~l~~~ 396 (406)
T 4adb_A 348 AGQAKQISQEAAKAGVMVLIAG-----------------------GNVVRFAPALNVSEEEVTTGLDRFAAA 396 (406)
T ss_dssp TTCHHHHHHHHHHTTEECEESS-----------------------TTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCcEEeecC-----------------------CCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 456677766 799887542 278999998899999999999999964
|
| >3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.2e-19 Score=235.49 Aligned_cols=332 Identities=18% Similarity=0.189 Sum_probs=210.3
Q ss_pred CCCCCHHHHHHHHHHHhhcc--CCCCCccchhHHHH-HHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhh
Q psy15216 1402 TTPIDPRVVDKMIPYLRVQF--GNPASRNHIYGWTA-EKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFY 1478 (2602)
Q Consensus 1402 ~~~~~~~v~eal~~~l~~~~--~np~~~~~~~~~~~-~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~ 1478 (2602)
....++.+.+++.+.+...+ ++|+...+. +... ....+..++.+++++|+++ ..++++|+++|+..++.++.
T Consensus 41 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~~-~~v~~~~Gs~a~~~al~~~~--- 115 (425)
T 3ecd_A 41 ENIVSRAVLDAQGSVLTNKYAEGYPGKRYYG-GCEFADEVEALAIERVKRLFNAGH-ANVQPHSGAQANGAVMLALA--- 115 (425)
T ss_dssp CCCCCHHHHHHHTSGGGSSCTTC-------------CCHHHHHHHHHHHHHHTCSE-EECCCSSHHHHHHHHHHHHC---
T ss_pred cCCCCHHHHHHHhhhhhcccccCCCcchhcC-CChHHHHHHHHHHHHHHHHhCCCC-ceeecCchHHHHHHHHHHcc---
Confidence 34558899999998885443 334331111 1111 1234445688899999764 23468899999999999886
Q ss_pred ccCCCEEEEcCCCCcchHHHHHHHHhCC--cEEEEeccCC-CCCcChhHHHhhcc-CCceEEEEeccccccccccChHHH
Q psy15216 1479 KKRGKHIITVQTEHKSVLDSIRKLENDG--FRVTYLKPKN-NGLITLSQLEEKIC-SDTILVSVMLVNNEIGVIQPILEI 1554 (2602)
Q Consensus 1479 ~~~gd~Vlv~~~~~~s~~~~~~~~~~~G--~~v~~v~~~~-~~~id~d~l~~~i~-~~t~lv~l~~~~n~tG~~~~l~~I 1554 (2602)
++||+|++++++|++...........| ..++.++.++ ++.+|+++|+++++ +++++|++++++| |...++++|
T Consensus 116 -~~gd~Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~--~~~~~l~~i 192 (425)
T 3ecd_A 116 -KPGDTVLGMSLDAGGHLTHGAKPALSGKWFNALQYGVSRDTMLIDYDQVEALAQQHKPSLIIAGFSAY--PRKLDFARF 192 (425)
T ss_dssp -CTTCEEEEECC------------------CEEEEECCCTTTSSCCHHHHHHHHHHHCCSEEEEECSCC--CSCCCHHHH
T ss_pred -CCCCEEEEcccccccceecchhhhhcccceeeeecCCCcccCccCHHHHHHHHhhcCCcEEEEccccC--CCcCCHHHH
Confidence 899999999999998332222211223 4556666653 47799999999997 6899999998887 567889999
Q ss_pred HHHhhhcCCEEEEecccccCcccccC--CCC-CccEEEEccccc-cCCCceEEEEEec-CCCCccccccccCCccccCCC
Q psy15216 1555 GELCRSKGVIFHCDAAQAVGKIDINI--QNY-KVDLMSFSAHKI-YGPKGIGALYIRR-NPRTRIEAQIHGGGHEYGLRS 1629 (2602)
Q Consensus 1555 ~~ia~~~gi~vivD~a~~~g~~~~~l--~~~-~~D~~v~S~~K~-~gp~G~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~ 1629 (2602)
.++|++||+++|+|++|+.|....+. ... .+|++++|+||. .||+| |+++.++ ++.+.+.+....+ ..
T Consensus 193 ~~l~~~~~~~li~De~~~~g~~~~~~~~~~~~~~di~~~s~sK~l~g~~~-g~~~~~~~~~~~~~~~~~~~~------~~ 265 (425)
T 3ecd_A 193 RAIADSVGAKLMVDMAHIAGVIAAGRHANPVEHAHVVTSTTHKTLRGPRG-GFVLTNDEEIAKKINSAVFPG------LQ 265 (425)
T ss_dssp HHHHHHHTCEEEEECGGGHHHHHTTSSCCGGGTCSEEEEESSGGGCCCSC-EEEEESCHHHHHHHHHHHC----------
T ss_pred HHHHHHcCCEEEEECcChHhhhhcccccCchhcCcEEEecCCcccCCCCc-EEEEeCCHHHHHHHHhhhCcc------cc
Confidence 99999999999999998765432111 001 268999999995 46775 9999884 3434443322211 12
Q ss_pred CCcchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEec--CCcHHHHHhc
Q psy15216 1630 GTLATHQIVGMGEAFRL-ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF--IEGESLLMAI 1706 (2602)
Q Consensus 1630 gt~~~~~~~al~~aL~~-~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~L 1706 (2602)
++++...+.++..++.. ...+++...++..++++++.+.|.+ .++.+..+... .....+.++. .+...+...|
T Consensus 266 ~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~--~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l 341 (425)
T 3ecd_A 266 GGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKA--GGVDLVTGGTD--NHLLLVDLRPKGLKGAQVEQAL 341 (425)
T ss_dssp -CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH--TTCEEGGGSCS--SSEEEEECGGGTCCHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh--CCCeeccCCCC--ceEEEEEeCCCCCCHHHHHHHH
Confidence 35666667777666653 3356788899999999999999987 57777643221 2333333332 2344555555
Q ss_pred --CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCC----CHHHHHHHHHHHHHh
Q psy15216 1707 --KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFT----TEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1707 --~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~----t~edid~li~~L~~~ 1765 (2602)
+||.++++..+... ......+.+|++++..+ +.+++++++++|++.
T Consensus 342 ~~~gi~v~~~~~p~~~-------------~~~~~~~~iRi~~~~~~~~~~~~e~i~~~~~~l~~~ 393 (425)
T 3ecd_A 342 ERAGITCNKNGIPFDP-------------EKPTITSGIRLGTPAGTTRGFGAAEFREVGRLILEV 393 (425)
T ss_dssp HHTTEECEECCCTTCS-------------SCTTTCSEEEEESHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHcCCEecccccCCCC-------------CCCCCccceeccchhheeccCCHHHHHHHHHHHHHH
Confidence 79999854422210 00011368999955444 499999999999874
|
| >3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia} | Back alignment and structure |
|---|
Probab=99.80 E-value=5.1e-19 Score=234.23 Aligned_cols=344 Identities=14% Similarity=0.023 Sum_probs=224.0
Q ss_pred CcccHHHHHHHHHhcCCC-ccccceeeeeceeeecc-CCCCCCCHHHHHHHHHHHh-hccCCCCCccchhHHHHHHHHHH
Q psy15216 1365 SPSKFIEIKNSLEMTGFK-AESSGIVMRPYTNIVFK-DATTPIDPRVVDKMIPYLR-VQFGNPASRNHIYGWTAEKAIEK 1441 (2602)
Q Consensus 1365 ~~~~~~~v~~aL~~~g~~-~~~~ei~~iP~~~v~L~-~~~~~~~~~v~eal~~~l~-~~~~np~~~~~~~~~~~~~~~~~ 1441 (2602)
+|+.+..+.+++++.+-+ ..+..++ +|++ +...+..+.+.+++.+... ...++.... +. ....+
T Consensus 32 ~~~~i~~~~~~~~~~~~~~~i~l~~g------~~~d~~~~~~v~~av~~a~~~~~~~~~~~~~~Y~-~~------~G~~~ 98 (448)
T 3meb_A 32 PPDAILNLTVLYNADTNPKKVNLGVG------AYRDESGKPWILPAVKEAEAIISSDLSKYNKEYP-PV------AGFPL 98 (448)
T ss_dssp CCCTTHHHHHHHHHCCCTTCEEESSC------CCCCTTSCCCCCHHHHHHHHHHHHCTTTTCCSCC-CT------TCCHH
T ss_pred CCChHHHHHHHHHhCCCCCeEEeecc------cccCCCCCEechHHHHHHHHHHhhcccCCCCCCC-CC------cchHH
Confidence 344466677777766443 2333332 2233 2334566777777666551 111111110 11 12567
Q ss_pred HHHHHHHHh-CCC-----CCcEEE--eCCHHHHHHHHH--HhhhhhhccCCCEEEEcCCCCcchHHHHH-HHHhCCcEEE
Q psy15216 1442 ARNEVAQLI-YAD-----PREIIW--TSGATESNNLAI--KGAAHFYKKRGKHIITVQTEHKSVLDSIR-KLENDGFRVT 1510 (2602)
Q Consensus 1442 lr~~ia~~~-g~~-----~~~iv~--t~gaT~al~~al--~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~-~~~~~G~~v~ 1510 (2602)
+|+.+++++ |.+ +++|++ |+|+|+|+++++ .++. .+||+|++++|+|+++...++ .++..|++++
T Consensus 99 lr~~ia~~l~g~~~~~~~~~~i~~~~t~ggt~al~l~~~~~~~~----~~gd~Vlv~~p~~~~~~~~~~~~~~~~G~~v~ 174 (448)
T 3meb_A 99 FLEAAQFLMFGKDSKAAQEGRIASCQSLSGTGSLHIGFEFLHLW----MPKAEFYMPSTTWPNHYGIYDKVFNKLKVPYK 174 (448)
T ss_dssp HHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHH----CTTCCEEEESSCCTHHHHHHHHHHCTTTSCCE
T ss_pred HHHHHHHHhcCCCccccCcCcEEEEECCcHHHHHHHHHHHHHHh----CCCCEEEECCCCCHhHHHHHHhhHHhCCCeEE
Confidence 899999987 876 689999 999999998843 4444 799999999999999877766 1113499999
Q ss_pred Eecc-CCC--CCcChhHHHhhcc---CCceEEEEeccccccccccC---hHHHHHHhhhcCCEEEEecccccC-cccc--
Q psy15216 1511 YLKP-KNN--GLITLSQLEEKIC---SDTILVSVMLVNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQAVG-KIDI-- 1578 (2602)
Q Consensus 1511 ~v~~-~~~--~~id~d~l~~~i~---~~t~lv~l~~~~n~tG~~~~---l~~I~~ia~~~gi~vivD~a~~~g-~~~~-- 1578 (2602)
.++. +++ +.+|+++++++++ ++++++++++|+||||.++| +++|+++|++||+++++|++|... ....
T Consensus 175 ~~~~~~~~~~~~~d~e~l~~~l~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~ 254 (448)
T 3meb_A 175 EYTYLRKDGELEIDFSNTKKDIQSAPEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEA 254 (448)
T ss_dssp EECCBCTTSCSSBCHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHHH
T ss_pred EEeccccccCCCcCHHHHHHHHHhCCCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEecccccccCCCccc
Confidence 9998 554 7899999999997 46889999999999999998 555999999999999999997632 2111
Q ss_pred ---cC----CCCCccEEEEccccccCCCc--eEEE--EE--------ec-----CCCCccccccccCCccccCCCCCcch
Q psy15216 1579 ---NI----QNYKVDLMSFSAHKIYGPKG--IGAL--YI--------RR-----NPRTRIEAQIHGGGHEYGLRSGTLAT 1634 (2602)
Q Consensus 1579 ---~l----~~~~~D~~v~S~~K~~gp~G--~G~l--~~--------~~-----~~~~~l~~~~~g~~~~~~~~~gt~~~ 1634 (2602)
.+ ......+++.|+||.+|++| +||+ ++ ++ +++..+.... +....+++.
T Consensus 255 ~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~~~-------~~~~~~~~~ 327 (448)
T 3meb_A 255 DAFAVRMFVDAGVEVLVAQSFSKNFGLYGERIGCLHVVHAGVEGSVEKNKALSAAMVSGMTLQI-------RKTWSMSAI 327 (448)
T ss_dssp HTHHHHHHHHTTCCEEEEEECTTTSCCGGGCCEEEEEECCCCSSSHHHHHHHHHHHHHHHHHHH-------HTTTSSCCH
T ss_pred CchhHHHHhhcCCcEEEEecccccCCCccccceeeeeeeccccccccCCHHHHHHHHHHHHHHH-------hcccCCccH
Confidence 01 11123477889999999888 8998 55 32 2222222211 122234555
Q ss_pred hHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHhhc-CCc------EEEeCCCCCCCCceEEEEEecCCcHH
Q psy15216 1635 HQIVGMGEAFRLA------RIEMKEELKRILFLQKRLYNGLMES-IEE------IYINGDMNNRIPHNLNISFNFIEGES 1701 (2602)
Q Consensus 1635 ~~~~al~~aL~~~------~~~~~~~~~~~~~l~~~l~~~L~~~-~~g------l~i~~~~~~~~~~~~~~~~~~~~~~~ 1701 (2602)
....++..+|... ...++..++++.++++++++.|.+. .++ +.... +...++.|...+.+.
T Consensus 328 ~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~------~~~g~~~~~~~~~~~ 401 (448)
T 3meb_A 328 HGAYIVQVIVHDKRLLQMFYDNVKEMSARIHRMRSLLHASLAKRKTPGPGSKGTWDHIL------TAIGMFTFTGLTPEH 401 (448)
T ss_dssp HHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSTTTCCCTHHH------HCCSSEEECCCCHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCcccccceeC------CCceEEEecCCCHHH
Confidence 6666666666521 1346788889999999999999872 123 22111 222335555544433
Q ss_pred HHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1702 LLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1702 ~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
+...+ +||.+.+|. .|||++.. +.++|++++++|++.
T Consensus 402 ~~~ll~~~gV~v~~G~--------------------------gRis~a~~-~~~~i~~~~~~l~~~ 440 (448)
T 3meb_A 402 VDYLKEKWSIYLVKAG--------------------------GRMSMCGL-TESNCDYVAEAIHDA 440 (448)
T ss_dssp HHHHHHHHCEEECSGG--------------------------GEEEGGGC-CTTTHHHHHHHHHHH
T ss_pred HHHHHHhCCEEEeCCC--------------------------cEEEEecC-CHHHHHHHHHHHHHH
Confidence 32222 689987653 29998754 446699999999874
|
| >3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.79 E-value=5.6e-19 Score=233.70 Aligned_cols=334 Identities=13% Similarity=0.163 Sum_probs=223.9
Q ss_pred CCCCCCCHHHHHHHHHHHhhhc--CCCCCCCcchhhhHHHHHHHHH-HHHHHHhCCCCCcEEEeCCHHHHHHHHHHhccc
Q psy15216 4 SATTPIDPRVVDKMIPYLRVQF--GNPASRNHIYGWTAEKAIEKAR-NEVAQLIYADPREIIWTSGATESNNLAIKGAAH 80 (2602)
Q Consensus 4 a~~~~~p~~v~~a~~~~l~~~~--~~p~~~~~~~~~~~~~~~~~~r-~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~ 80 (2602)
++..+.++.+++++.+.+...+ ++|.. .+..+.......+++. +++++++|++. ..++++|+++|+..++.++.
T Consensus 52 ~~~~~~~~~v~~a~~~~~~~~~~~g~~~~-~~~~g~~~~~~~e~~a~~~la~~~g~~~-~~v~~~sGs~a~~~a~~~~~- 128 (447)
T 3h7f_A 52 ASENFVPRAVLQAQGSVLTNKYAEGLPGR-RYYGGCEHVDVVENLARDRAKALFGAEF-ANVQPHSGAQANAAVLHALM- 128 (447)
T ss_dssp TTCCCCCHHHHHHHTSGGGGCCCCEETTE-ESSSCCHHHHHHHHHHHHHHHHHHTCSE-EECCCSSHHHHHHHHHHHHC-
T ss_pred cCCCCCCHHHHHHHHHHhcCCccccCCcc-cccCccHHHHHHHHHHHHHHHHHcCCCc-eEEEeCCHHHHHHHHHHHhc-
Confidence 3445779999999988875433 23332 1222333333445555 99999999874 23337888999999999887
Q ss_pred ccccCCCEEEEcCCCCcccHH-H--HHHHHhCCcEEEEeccC-CCCccChHHHHhhcc-CCceEEEEecccCcccccccH
Q psy15216 81 FYKKRGKHIITVQTEHKSVLD-S--IRKLENDGFRVTYLKPK-NNGLITLSQLEEKIC-SDTILVSVMLVNNEIGVIQPI 155 (2602)
Q Consensus 81 ~~~~~gd~Vlv~~~~~~s~~~-~--~~~~~~~G~~v~~v~~~-~~~~ld~e~l~~~i~-~~tklv~i~~~~npTG~~~~l 155 (2602)
++||+|++++++|+++.. . .... ..+..++.++++ .++.+|+++|++++. .+++++++++++||++. ++
T Consensus 129 ---~~Gd~Vl~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~i~~~~~~~~~~~--~l 202 (447)
T 3h7f_A 129 ---SPGERLLGLDLANGGHLTHGMRLNFS-GKLYENGFYGVDPATHLIDMDAVRATALEFRPKVIIAGWSAYPRVL--DF 202 (447)
T ss_dssp ---CTTCEEEEECGGGTCCGGGTCTTSHH-HHSSEEEEECCCTTTCSCCHHHHHHHHHHHCCSEEEEECSSCCSCC--CH
T ss_pred ---CCCCEEEecCcccccccchhhhhhhc-CCeeEEEEcCcCcccCCcCHHHHHHHHHhcCCeEEEEcCCCCCCcc--CH
Confidence 899999999999988321 1 1111 125667777766 457899999999995 57899999999998887 99
Q ss_pred HHHHHHHHhcCCEEEEecccccccc----cccCCCCCccEEEecccccc-CCCCcEEEEEecCCCCcccceecCCCcccc
Q psy15216 156 LEIGELCRSKGVIFHCDAAQAVGKI----DINIQNYKVDLMSFSAHKIY-GPKGIGALYIRRNPRTRIEAQIHGGGHEYG 230 (2602)
Q Consensus 156 ~~I~~la~~~g~~livD~a~a~g~~----~~dl~~~~~D~~~~S~~K~~-Gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~ 230 (2602)
++|.++|++||+++|+|++|+.|.. ..+.. .++|++++|+||.+ ||.| |+++.++++.+.+.+...+
T Consensus 203 ~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~~~-~~~di~~~s~sK~l~G~~g-G~i~~~~~~~~~l~~~~~~------ 274 (447)
T 3h7f_A 203 AAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSPV-PHADVVSTTVHKTLGGGRS-GLIVGKQQYAKAINSAVFP------ 274 (447)
T ss_dssp HHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCST-TTCSEEEEESSGGGCCCSC-EEEEECGGGHHHHHHHHTT------
T ss_pred HHHHHHHHHcCCEEEEECCchhhhhcCCCCCCCC-CCCcEEEecCCcCCCCCCe-EEEEECHHHHHHHhhhcCC------
Confidence 9999999999999999999876532 11111 24689999999954 5886 9999998776666543321
Q ss_pred ccccCcchhHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHhhc---cCceEEeCCCCCCCCceEEEEEcc--cChh
Q psy15216 231 LRSGTLATHQIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMES---IEEIYINGDMNNRIPHNLNISFNF--IEGE 304 (2602)
Q Consensus 231 ~~~gt~~~~~~~al~~al~~~-~~~~~~~~~~~~~l~~~l~~~L~~~---~~g~~l~~~~~~~~~~~~~~~~~~--~~~~ 304 (2602)
+..++++...+.++.+++... ..++++..++..++++++.+.|.+. .+|+.++.+... .+...+.+.. .+..
T Consensus 275 ~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~ 352 (447)
T 3h7f_A 275 GQQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMAPDVAKAGVSVVSGGTD--VHLVLVDLRDSPLDGQ 352 (447)
T ss_dssp TTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTSHHHHHTTCEEGGGSCS--SSEEEEECTTSSCCHH
T ss_pred cccCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEecCCCC--CCEEEEEcCCCCCCHH
Confidence 134566666677776777643 3356788889999999999999761 147777643221 2333444432 2344
Q ss_pred HHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCC----CCHHHHHHHHHHHHhh
Q psy15216 305 SLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRF----TTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 305 ~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~----~t~edid~li~~L~~~ 369 (2602)
.+...| +||.++....... ..+....+++|+++... .+++|+++++++|++.
T Consensus 353 ~~~~~l~~~GI~v~~~~i~~~-------------~~~p~~~~~lRig~~~~~~~~~~~eei~~~~~~l~~~ 410 (447)
T 3h7f_A 353 AAEDLLHEVGITVNRNAVPND-------------PRPPMVTSGLRIGTPALATRGFGDTEFTEVADIIATA 410 (447)
T ss_dssp HHHHHHHHTTEECBC--------------------------CEEEEECHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCeEEecccCCCC-------------CCCCCCCCceeccCHHHhhCCCCHHHHHHHHHHHHHH
Confidence 444444 5999873211100 00001236799987543 4789999999999874
|
| >3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.79 E-value=4.1e-19 Score=234.42 Aligned_cols=334 Identities=17% Similarity=0.169 Sum_probs=213.0
Q ss_pred CCCCCCCHHHHHHHHHHHhhhc--CCCCCCCcchhhhH-HHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhccc
Q psy15216 4 SATTPIDPRVVDKMIPYLRVQF--GNPASRNHIYGWTA-EKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAH 80 (2602)
Q Consensus 4 a~~~~~p~~v~~a~~~~l~~~~--~~p~~~~~~~~~~~-~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~ 80 (2602)
++..+.++.+.+++.+.+...+ ++++. .+..+... ....+.+++++++++|+++ ..++++|+++|+..++.++.
T Consensus 39 ~~~~~~~~~v~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~v~~~~Gs~a~~~al~~~~- 115 (425)
T 3ecd_A 39 ASENIVSRAVLDAQGSVLTNKYAEGYPGK-RYYGGCEFADEVEALAIERVKRLFNAGH-ANVQPHSGAQANGAVMLALA- 115 (425)
T ss_dssp TTCCCCCHHHHHHHTSGGGSSCTTC-------------CCHHHHHHHHHHHHHHTCSE-EECCCSSHHHHHHHHHHHHC-
T ss_pred cccCCCCHHHHHHHhhhhhcccccCCCcc-hhcCCChHHHHHHHHHHHHHHHHhCCCC-ceeecCchHHHHHHHHHHcc-
Confidence 3445679999999998875433 23322 11111111 1234445688999999864 23568899999999999887
Q ss_pred ccccCCCEEEEcCCCCcccHHHHHHH--HhCCcEEEEeccCC-CCccChHHHHhhcc-CCceEEEEecccCcccccccHH
Q psy15216 81 FYKKRGKHIITVQTEHKSVLDSIRKL--ENDGFRVTYLKPKN-NGLITLSQLEEKIC-SDTILVSVMLVNNEIGVIQPIL 156 (2602)
Q Consensus 81 ~~~~~gd~Vlv~~~~~~s~~~~~~~~--~~~G~~v~~v~~~~-~~~ld~e~l~~~i~-~~tklv~i~~~~npTG~~~~l~ 156 (2602)
++||+|+++.++|++........ ...+..++.++.++ ++.+|+++|+++++ +++++|++++++| |...+++
T Consensus 116 ---~~gd~Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~--~~~~~l~ 190 (425)
T 3ecd_A 116 ---KPGDTVLGMSLDAGGHLTHGAKPALSGKWFNALQYGVSRDTMLIDYDQVEALAQQHKPSLIIAGFSAY--PRKLDFA 190 (425)
T ss_dssp ---CTTCEEEEECC------------------CEEEEECCCTTTSSCCHHHHHHHHHHHCCSEEEEECSCC--CSCCCHH
T ss_pred ---CCCCEEEEcccccccceecchhhhhcccceeeeecCCCcccCccCHHHHHHHHhhcCCcEEEEccccC--CCcCCHH
Confidence 89999999999999833222221 12234666676653 47899999999997 6899999998888 5678999
Q ss_pred HHHHHHHhcCCEEEEecccccccccccC--CC-CCccEEEecccccc-CCCCcEEEEEec-CCCCcccceecCCCccccc
Q psy15216 157 EIGELCRSKGVIFHCDAAQAVGKIDINI--QN-YKVDLMSFSAHKIY-GPKGIGALYIRR-NPRTRIEAQIHGGGHEYGL 231 (2602)
Q Consensus 157 ~I~~la~~~g~~livD~a~a~g~~~~dl--~~-~~~D~~~~S~~K~~-Gp~G~G~l~~~~-~~~~~l~~~~~g~~~~~~~ 231 (2602)
+|.++|++||+++|+|++|+.|...... .. ..+|++++|+||.+ ||. .|+++.++ .+.+.+.+....+
T Consensus 191 ~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~~~~di~~~s~sK~l~g~~-~g~~~~~~~~~~~~~~~~~~~~------ 263 (425)
T 3ecd_A 191 RFRAIADSVGAKLMVDMAHIAGVIAAGRHANPVEHAHVVTSTTHKTLRGPR-GGFVLTNDEEIAKKINSAVFPG------ 263 (425)
T ss_dssp HHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGGTCSEEEEESSGGGCCCS-CEEEEESCHHHHHHHHHHHC--------
T ss_pred HHHHHHHHcCCEEEEECcChHhhhhcccccCchhcCcEEEecCCcccCCCC-cEEEEeCCHHHHHHHHhhhCcc------
Confidence 9999999999999999998765432110 00 12689999999965 666 49999884 4444444332111
Q ss_pred cccCcchhHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc--cChhHHHH
Q psy15216 232 RSGTLATHQIVGMGEAFRL-ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF--IEGESLLM 308 (2602)
Q Consensus 232 ~~gt~~~~~~~al~~al~~-~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~ 308 (2602)
..++++...+.++.+++.. ...++++..++..++++++.+.|.+ .++.+..+... ...+.+.++. .+...+..
T Consensus 264 ~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~--~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 339 (425)
T 3ecd_A 264 LQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKA--GGVDLVTGGTD--NHLLLVDLRPKGLKGAQVEQ 339 (425)
T ss_dssp ---CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH--TTCEEGGGSCS--SSEEEEECGGGTCCHHHHHH
T ss_pred ccCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh--CCCeeccCCCC--ceEEEEEeCCCCCCHHHHHH
Confidence 1235666666666666653 3356788899999999999999987 57887754321 2344444442 34455555
Q ss_pred Hh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCC----CHHHHHHHHHHHHhh
Q psy15216 309 AI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFT----TEKEIDFTIKLLKMK 369 (2602)
Q Consensus 309 ~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~----t~edid~li~~L~~~ 369 (2602)
.| +||.++++...... ......+.+|++++.++ +++++++++++|++.
T Consensus 340 ~l~~~gi~v~~~~~p~~~-------------~~~~~~~~iRi~~~~~~~~~~~~e~i~~~~~~l~~~ 393 (425)
T 3ecd_A 340 ALERAGITCNKNGIPFDP-------------EKPTITSGIRLGTPAGTTRGFGAAEFREVGRLILEV 393 (425)
T ss_dssp HHHHTTEECEECCCTTCS-------------SCTTTCSEEEEESHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHcCCEecccccCCCC-------------CCCCCccceeccchhheeccCCHHHHHHHHHHHHHH
Confidence 55 69999854321100 00012368999955444 499999999999874
|
| >3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.79 E-value=5.2e-19 Score=234.03 Aligned_cols=332 Identities=13% Similarity=0.164 Sum_probs=221.9
Q ss_pred CCCCHHHHHHHHHHHhhcc--CCCCCccchhHHHHHHHHHHHH-HHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhc
Q psy15216 1403 TPIDPRVVDKMIPYLRVQF--GNPASRNHIYGWTAEKAIEKAR-NEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYK 1479 (2602)
Q Consensus 1403 ~~~~~~v~eal~~~l~~~~--~np~~~~~~~~~~~~~~~~~lr-~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~ 1479 (2602)
.+.++.+++++.+.+.+.+ ++|++..+ .+.......+++. +++++++|++. ..++++|+++|+..++.++.
T Consensus 55 ~~~~~~v~~a~~~~~~~~~~~g~~~~~~~-~g~~~~~~~e~~a~~~la~~~g~~~-~~v~~~sGs~a~~~a~~~~~---- 128 (447)
T 3h7f_A 55 NFVPRAVLQAQGSVLTNKYAEGLPGRRYY-GGCEHVDVVENLARDRAKALFGAEF-ANVQPHSGAQANAAVLHALM---- 128 (447)
T ss_dssp CCCCHHHHHHHTSGGGGCCCCEETTEESS-SCCHHHHHHHHHHHHHHHHHHTCSE-EECCCSSHHHHHHHHHHHHC----
T ss_pred CCCCHHHHHHHHHHhcCCccccCCccccc-CccHHHHHHHHHHHHHHHHHcCCCc-eEEEeCCHHHHHHHHHHHhc----
Confidence 4558899999998886433 44544222 2223333344444 99999999874 23337888999999999887
Q ss_pred cCCCEEEEcCCCCcchHHH---HHHHHhCCcEEEEeccC-CCCCcChhHHHhhcc-CCceEEEEeccccccccccChHHH
Q psy15216 1480 KRGKHIITVQTEHKSVLDS---IRKLENDGFRVTYLKPK-NNGLITLSQLEEKIC-SDTILVSVMLVNNEIGVIQPILEI 1554 (2602)
Q Consensus 1480 ~~gd~Vlv~~~~~~s~~~~---~~~~~~~G~~v~~v~~~-~~~~id~d~l~~~i~-~~t~lv~l~~~~n~tG~~~~l~~I 1554 (2602)
++||+|++++++|+++... .... ..+..+..++++ .++.+|+++|++++. .++++|++++++||++. ++++|
T Consensus 129 ~~Gd~Vl~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~i~~~~~~~~~~~--~l~~i 205 (447)
T 3h7f_A 129 SPGERLLGLDLANGGHLTHGMRLNFS-GKLYENGFYGVDPATHLIDMDAVRATALEFRPKVIIAGWSAYPRVL--DFAAF 205 (447)
T ss_dssp CTTCEEEEECGGGTCCGGGTCTTSHH-HHSSEEEEECCCTTTCSCCHHHHHHHHHHHCCSEEEEECSSCCSCC--CHHHH
T ss_pred CCCCEEEecCcccccccchhhhhhhc-CCeeEEEEcCcCcccCCcCHHHHHHHHHhcCCeEEEEcCCCCCCcc--CHHHH
Confidence 8999999999999883221 1111 125567777766 357799999999995 57899999999998876 99999
Q ss_pred HHHhhhcCCEEEEecccccCccc----ccCCCCCccEEEEcccc-ccCCCceEEEEEecCCCCccccccccCCccccCCC
Q psy15216 1555 GELCRSKGVIFHCDAAQAVGKID----INIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRS 1629 (2602)
Q Consensus 1555 ~~ia~~~gi~vivD~a~~~g~~~----~~l~~~~~D~~v~S~~K-~~gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~ 1629 (2602)
.++|++||+++|+|++|+.|... .+.. .++|++++|+|| +.||+| |+++.++++.+.+.+...+ +..
T Consensus 206 ~~l~~~~g~lli~Dea~~~g~~~~g~~~~~~-~~~di~~~s~sK~l~G~~g-G~i~~~~~~~~~l~~~~~~------~~~ 277 (447)
T 3h7f_A 206 RSIADEVGAKLLVDMAHFAGLVAAGLHPSPV-PHADVVSTTVHKTLGGGRS-GLIVGKQQYAKAINSAVFP------GQQ 277 (447)
T ss_dssp HHHHHHHTCEEEEECTTTHHHHHTTSSCCST-TTCSEEEEESSGGGCCCSC-EEEEECGGGHHHHHHHHTT------TTC
T ss_pred HHHHHHcCCEEEEECCchhhhhcCCCCCCCC-CCCcEEEecCCcCCCCCCe-EEEEECHHHHHHHhhhcCC------ccc
Confidence 99999999999999998765321 1111 246899999999 556887 9999988766655543321 234
Q ss_pred CCcchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhc---CCcEEEeCCCCCCCCceEEEEEec--CCcHHHH
Q psy15216 1630 GTLATHQIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMES---IEEIYINGDMNNRIPHNLNISFNF--IEGESLL 1703 (2602)
Q Consensus 1630 gt~~~~~~~al~~aL~~~-~~~~~~~~~~~~~l~~~l~~~L~~~---~~gl~i~~~~~~~~~~~~~~~~~~--~~~~~~~ 1703 (2602)
++++...+.++.+++... ..+++...++..++++++.+.|.+. .+|+.+...+.. .....+.+.. .+...+.
T Consensus 278 ~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 355 (447)
T 3h7f_A 278 GGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMAPDVAKAGVSVVSGGTD--VHLVLVDLRDSPLDGQAAE 355 (447)
T ss_dssp SSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTSHHHHHTTCEEGGGSCS--SSEEEEECTTSSCCHHHHH
T ss_pred CCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEecCCCC--CCEEEEEcCCCCCCHHHHH
Confidence 566666677777777643 3356788889999999999999762 136776542211 2233333322 2334444
Q ss_pred Hhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCC----CCHHHHHHHHHHHHHhh
Q psy15216 1704 MAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRF----TTEKEIDFTIKLLKMKE 1766 (2602)
Q Consensus 1704 ~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~----~t~edid~li~~L~~~~ 1766 (2602)
..| +||.++........ ......+++|+++... .+++|+++++++|++..
T Consensus 356 ~~l~~~GI~v~~~~i~~~~-------------~~p~~~~~lRig~~~~~~~~~~~eei~~~~~~l~~~l 411 (447)
T 3h7f_A 356 DLLHEVGITVNRNAVPNDP-------------RPPMVTSGLRIGTPALATRGFGDTEFTEVADIIATAL 411 (447)
T ss_dssp HHHHHTTEECBC--------------------------CEEEEECHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHCCeEEecccCCCCC-------------CCCCCCCceeccCHHHhhCCCCHHHHHHHHHHHHHHH
Confidence 444 69998732111100 0001136799987543 57899999999998743
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 | Back alignment and structure |
|---|
Probab=99.79 E-value=3.1e-19 Score=238.53 Aligned_cols=331 Identities=18% Similarity=0.195 Sum_probs=212.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhccc
Q psy15216 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAH 80 (2602)
Q Consensus 1 Ld~a~~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~ 80 (2602)
||+.++.+. +.+.+++.+.+... . . .|. ......+++++++++++. +++++|+|+|+|+++++.++.
T Consensus 46 lD~~~~~~~-~~v~~a~~~~~~~~--~--~-~y~----~~~~~~~l~~~la~~~~~--~~v~~t~ggt~A~~~al~~~~- 112 (467)
T 1ax4_A 46 IDLLTDSGT-NAMSDHQWAAMITG--D--E-AYA----GSRNYYDLKDKAKELFNY--DYIIPAHQGRGAENILFPVLL- 112 (467)
T ss_dssp EECSCSSSC-CCEEHHHHHHHHTC--C--C-CSS----SCHHHHHHHHHHHHHHCC--CEEEEESSHHHHHHHHHHHHH-
T ss_pred eecccCcCC-HHHHHHHHHHHhhc--c--c-ccc----cCccHHHHHHHHHHHcCC--CcEEEcCCcHHHHHHHHHHHH-
Confidence 466565554 56677777766431 1 0 111 113467889999999986 589999999999999999987
Q ss_pred cccc----CCCE---EEEcCCCCcccHHHHHHHHhCCcEEEEeccC----------CCCccChHHHHhhccC----CceE
Q psy15216 81 FYKK----RGKH---IITVQTEHKSVLDSIRKLENDGFRVTYLKPK----------NNGLITLSQLEEKICS----DTIL 139 (2602)
Q Consensus 81 ~~~~----~gd~---Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~----------~~~~ld~e~l~~~i~~----~tkl 139 (2602)
+ +||+ |+++.+.|+++...+.. .|++++.++.. .++.+|+++|++++++ +|++
T Consensus 113 ---~~~~~~Gd~~~~viv~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~~~~ 186 (467)
T 1ax4_A 113 ---KYKQKEGKAKNPVFISNFHFDTTAAHVEL---NGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVA 186 (467)
T ss_dssp ---HHHHHTTCCSSCEEEESSCCHHHHHHHHH---TTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEE
T ss_pred ---HhhccCCCccceEEEeccccchhhHHHhc---cCCceecccccccccccccCCcccccCHHHHHHHHHhcCCCCeeE
Confidence 6 8998 88885444554544444 48888876532 1456899999999974 7999
Q ss_pred EEEecccCcc-ccccc---HHHHHHHHHhcCCEEEEeccccc-----------ccccccCCC------CCccEEEecccc
Q psy15216 140 VSVMLVNNEI-GVIQP---ILEIGELCRSKGVIFHCDAAQAV-----------GKIDINIQN------YKVDLMSFSAHK 198 (2602)
Q Consensus 140 v~i~~~~npT-G~~~~---l~~I~~la~~~g~~livD~a~a~-----------g~~~~dl~~------~~~D~~~~S~~K 198 (2602)
|++++++||| |.++| +++|.++|++||+++|+|++|++ +...+++.. ..+|++++|+||
T Consensus 187 vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK 266 (467)
T 1ax4_A 187 IVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKK 266 (467)
T ss_dssp EEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTS
T ss_pred EEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCCCchhhhhhhhccccceEEEeccc
Confidence 9999999999 88876 57899999999999999998765 222222211 136888999999
Q ss_pred ccCCC-CcEEEEEe-c-CCCCcccceec--CCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy15216 199 IYGPK-GIGALYIR-R-NPRTRIEAQIH--GGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGL 273 (2602)
Q Consensus 199 ~~Gp~-G~G~l~~~-~-~~~~~l~~~~~--g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L 273 (2602)
.+|++ | |+++.+ + ++++.+.+... ++. ...++.+...+.++..+++.... ++..++..++++++.+.|
T Consensus 267 ~~g~~~G-g~~~~~d~~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~l~~~L 339 (467)
T 1ax4_A 267 DPLLNIG-GLVAIRDNEEIFTLARQRCVPMEGF----VTYGGLAGRDMAAMVQGLEEGTE--EEYLHYRIGQVKYLGDRL 339 (467)
T ss_dssp TTCCSSC-EEEEESSCHHHHHHHHHHHHHHTCS----TTTTTCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHH
T ss_pred cCCCCcc-eEEEeCCHHHHHHHHHhhccccccc----cccCCccchHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHH
Confidence 88876 4 777777 5 56555443221 111 11234444444444445542111 223344456677888888
Q ss_pred hhccCceEEeCCCCCCCCceEEEE-------Ecc--cChhHHHHHh---CCeEEcc-cccCCCCCCChHHHHHHcCCCcc
Q psy15216 274 MESIEEIYINGDMNNRIPHNLNIS-------FNF--IEGESLLMAI---KDIAVSS-GSACTSASLEPSYVLRALGCNDE 340 (2602)
Q Consensus 274 ~~~~~g~~l~~~~~~~~~~~~~~~-------~~~--~~~~~~~~~L---~gI~v~~-g~~~~~~~~~~~~~~~~~g~~~~ 340 (2602)
.+ +++.+..+.. ..++.+. ++. .+..++...| +||.+.+ |..+... .+ ..|....
T Consensus 340 ~~--~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~~g~~~~~~--~~-----~~g~~~~ 407 (467)
T 1ax4_A 340 RE--AGIPIQYPTG---GHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGR--DP-----ATGEQKH 407 (467)
T ss_dssp HH--TTCCBCSSCC---SSEEEEESTTTCTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCB--CT-----TTCSBCC
T ss_pred Hh--CCCCcccCCC---ceEEEEehhhhccccccCCCCHHHHHHHHHHhcCceeeecCcccccc--cc-----ccccccc
Confidence 76 4666553322 2233333 211 2345566655 5999987 5432110 00 0011111
Q ss_pred CCCCeEEEecCCC-CCHHHHHHHHHHHHhh
Q psy15216 341 LAHSSIRFTIGRF-TTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 341 ~~~~~iRis~~~~-~t~edid~li~~L~~~ 369 (2602)
...+++||+++.+ +|++|+++++++|++.
T Consensus 408 ~~~~~iRls~~~~~~t~e~i~~~~~~l~~~ 437 (467)
T 1ax4_A 408 ADMEFMRLTIARRVYTNDHMDYIADALIGL 437 (467)
T ss_dssp CSCCEEEEECCTTSSCHHHHHHHHHHHHTT
T ss_pred cccceEEEecccccCCHHHHHHHHHHHHHH
Confidence 1237999999854 8999999999999964
|
| >2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A | Back alignment and structure |
|---|
Probab=99.79 E-value=9.5e-20 Score=228.79 Aligned_cols=226 Identities=15% Similarity=0.131 Sum_probs=151.8
Q ss_pred eeCHHHHHHHHHHHHHHHHHHhhccccceEEEeeCCC-CCHH--HH--HHHHH--------H----HHHcCCceeEeech
Q psy15216 2135 IKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAY-FNDI--QR--QFTKN--------A----AKLAGLNVLRLLNE 2197 (2602)
Q Consensus 2135 ~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~-f~~~--qr--~~l~~--------A----a~~AGl~~~~li~E 2197 (2602)
.+++..+++.+ +.|++ +. ..+.+ ..+|+++|.. |... || +++.+ + ++.++++.+.++.|
T Consensus 73 ~~~~~~l~~i~-~aL~~-~~-~~~~~-~~lv~glP~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~e 148 (320)
T 2zgy_A 73 QYSDVNVVAVH-HALLT-SG-LPVSE-VDIVCTLPLTEYYDRNNQPNTENIERKKANFRKKITLNGGDTFTIKDVKVMPE 148 (320)
T ss_dssp GGSHHHHHHHH-HHHHH-HS-CCSCE-EEEEEEECHHHHBCTTSSBCHHHHHHHHHHTTSCEEETTBCCCEEEEEEEEES
T ss_pred cchHHHHHHHH-HHHHH-cC-CCCce-EEEEEcCCHHHHccCCCcccHHHHHHHHHhhcCcEecCCCcEEEEEEEEEecC
Confidence 56777777654 55543 21 11222 3699999987 6541 21 11221 1 34456678999999
Q ss_pred hHHHHHHhhhccCCCCceEEEEEeCCceEEEEEEEEeCCEEEEEEEecCCCCchhHHHHHHHHHHHHHHhhhcCChhHHH
Q psy15216 2198 PTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLSYKDVN 2277 (2602)
Q Consensus 2198 P~AAAl~y~~~~~~~~~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~ 2277 (2602)
|.||+++|... ...+..++|+|+||||+|+++++ ++.+.+.+..++..+||.+||+.|.+++.++ .....
T Consensus 149 ~~aa~~~~~~~-~~~~~~~~vvDiGggttd~~v~~--~g~~~v~~~~~~~~lGg~~~~~~I~~~l~~~----~~~i~--- 218 (320)
T 2zgy_A 149 SIPAGYEVLQE-LDELDSLLIIDLGGTTLDISQVM--GKLSGISKIYGDSSLGVSLVTSAVKDALSLA----RTKGS--- 218 (320)
T ss_dssp SHHHHHHHHHH-SCTTCEEEEEEECSSCEEEEEEE--GGGCCEEEEEEECSCCTHHHHHHHHHHTTCC----SBGGG---
T ss_pred cHHHHHhhhcc-ccCCCCEEEEEcCCCeEEEEEEe--CCeeEEeeecCCccccHHHHHHHHHHHHHHc----CCCCC---
Confidence 99999988633 23456899999999999999997 4555677777888999999999999888642 11111
Q ss_pred HHHHHHHHH-HHHhcccceEEEEEEecCCceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccceEEEEeCcc
Q psy15216 2278 ILMIKSREI-KELLSYQSSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGST 2356 (2602)
Q Consensus 2278 ~l~~~~e~~-K~~ls~~~~~~~~i~~~~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s 2356 (2602)
...+|++ |..- . ...........-+++++.+++++.++++.+.|.+.+++. .+++.|+|+||+|
T Consensus 219 --~~~ae~~lk~~~-~--------~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~i~~~i~~~----~~~~~vvl~GGga 283 (320)
T 2zgy_A 219 --SYLADDIIIHRK-D--------NNYLKQRINDENKISIVTEAMNEALRKLEQRVLNTLNEF----SGYTHVMVIGGGA 283 (320)
T ss_dssp --HHHHHHHHHTTT-C--------HHHHHHHSSSSCTHHHHHHHHHHHHHHHHHHHHHHHTTC----CCCCEEEEESTTH
T ss_pred --HHHHHHHHHHhh-h--------hhcccceecCchhhHHHHHHHHHHHHHHHHHHHHHHHhh----cCCCeEEEECChH
Confidence 1234444 3220 0 000000000112456666777777777777777666652 5789999999999
Q ss_pred chHHHHHHHHhhcCC---cccCCCCccchhhhHHHHHh
Q psy15216 2357 RMKHIHEGVSNFFKT---TLLTSIDPDKAVVFGAAIQA 2391 (2602)
Q Consensus 2357 ~~p~v~~~l~~~f~~---~~~~~~~p~~aVa~GAa~~a 2391 (2602)
++ +++.|++.|+. ++..+.||++|+|+||++++
T Consensus 284 ~l--l~~~l~~~~~~~~~~~~~~~~P~~a~A~G~~~~~ 319 (320)
T 2zgy_A 284 EL--ICDAVKKHTQIRDERFFKTNNSQYDLVNGMYLIG 319 (320)
T ss_dssp HH--HHHHHHHTSCCCGGGEECCSCGGGHHHHHHHHHH
T ss_pred HH--HHHHHHHHhCCCCCceeeCCCcHHHHHHHHHHhc
Confidence 98 99999999987 57889999999999999876
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=6.2e-21 Score=248.74 Aligned_cols=315 Identities=15% Similarity=0.156 Sum_probs=221.7
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHh----C--CCCCcEEEeCCHHHHHHHHHHhhhhh
Q psy15216 1404 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI----Y--ADPREIIWTSGATESNNLAIKGAAHF 1477 (2602)
Q Consensus 1404 ~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~----g--~~~~~iv~t~gaT~al~~al~~l~~~ 1477 (2602)
+.++.+.+++.+.+... .+.+... ..++|+.+++++ | +++++|++|+|+++|+.+++.++.
T Consensus 44 ~~~~~v~~a~~~~~~~~-------~~~y~~~----~~~l~~~la~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~-- 110 (392)
T 3b1d_A 44 EVMPEVKQAIHDYAEQL-------VYGYTYA----SDELLQAVLDWEKSEHQYSFDKEDIVFVEGVVPAISIAIQAFT-- 110 (392)
Confidence 45667788887776431 0111111 445666666654 5 567899999999999999999987
Q ss_pred hccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCC---CCCcChhHHHhhcc-CCceEEEEeccccccccccC---
Q psy15216 1478 YKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN---NGLITLSQLEEKIC-SDTILVSVMLVNNEIGVIQP--- 1550 (2602)
Q Consensus 1478 ~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~---~~~id~d~l~~~i~-~~t~lv~l~~~~n~tG~~~~--- 1550 (2602)
++||+|+++.+.|+++...+... |++++.++.++ ++.+|+++++++++ +++++|++++|+||||.++|
T Consensus 111 --~~gd~vl~~~p~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~ 185 (392)
T 3b1d_A 111 --KEGEAVLINSPVYPPFARSVRLN---NRKLVSNSLKEENGLFQIDFEQLENDIVENDVKLYLLCNPHNPGGRVWEREV 185 (392)
Confidence 79999999999999988766555 88888888753 24589999999998 78899999999999999988
Q ss_pred hHHHHHHhhhcCCEEEEecccccCcc----cccC---CC--CCccEEEEccccccCCCc--eEEEEEecC-CCCcccccc
Q psy15216 1551 ILEIGELCRSKGVIFHCDAAQAVGKI----DINI---QN--YKVDLMSFSAHKIYGPKG--IGALYIRRN-PRTRIEAQI 1618 (2602)
Q Consensus 1551 l~~I~~ia~~~gi~vivD~a~~~g~~----~~~l---~~--~~~D~~v~S~~K~~gp~G--~G~l~~~~~-~~~~l~~~~ 1618 (2602)
+++|.++|++||+++|+|++|+.... ..++ .. .+..+++.|+||.+|++| +||++++++ +++.+....
T Consensus 186 l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~ 265 (392)
T 3b1d_A 186 LEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTVSPDFKDFALVLSSATKTFNIAGTKNSYAIIENPTLCAQFKHQQ 265 (392)
Confidence 88999999999999999999875321 1122 11 345688899999887666 799998754 776665432
Q ss_pred ccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEec--
Q psy15216 1619 HGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-- 1696 (2602)
Q Consensus 1619 ~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~-- 1696 (2602)
. .+..++++...+.++.++|+.....+++.++++.++++++.+.|.+.++++.+..+.... ...+.++.
T Consensus 266 ~------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~---~~~i~~~~~~ 336 (392)
T 3b1d_A 266 L------VNNHHEVSSLGYIATETAYRYGKPWLVALKAVLEENIQFAVEYFAQEAPRLKVMKPQGTY---LIWLDFSDYG 336 (392)
Confidence 1 111234555556656566664344567788888888999988887634676655332211 11123332
Q ss_pred CCcHHHHHhc---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1697 IEGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1697 ~~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
.+..++...| +||.+++|..|... ..+++||+++. +.+++++++++|++
T Consensus 337 ~~~~~l~~~l~~~~gi~v~~g~~f~~~-----------------~~~~iRi~~~~--~~e~i~~~l~~l~~ 388 (392)
T 3b1d_A 337 LTDDALFTLLHDQAKVILNRGSDYGSE-----------------GELHARLNIAA--PKSLVEEICKRIVC 388 (392)
Confidence 2344555554 58999888766421 12789999875 57899999999886
|
| >3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=3.4e-18 Score=221.32 Aligned_cols=306 Identities=13% Similarity=0.074 Sum_probs=206.0
Q ss_pred cchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHHH--HHhCC
Q psy15216 33 HIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRK--LENDG 110 (2602)
Q Consensus 33 ~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~--~~~~G 110 (2602)
+.+++...+..+++++++++++|.+ .+++++|+++|+.+ +.++. ++||+|+++.+.|++....+.. +.+.|
T Consensus 59 ~~y~r~~~p~~~~l~~~la~l~g~~--~~~~~~sG~~Ai~~-~~~l~----~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g 131 (400)
T 3nmy_A 59 FEYSRTHNPTRFAYERCVAALEGGT--RAFAFASGMAATST-VMELL----DAGSHVVAMDDLYGGTFRLFERVRRRTAG 131 (400)
T ss_dssp CCBTTTCCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHH-HHTTS----CTTCEEEEESSCCHHHHHHHHHTHHHHHC
T ss_pred cccccCCCHHHHHHHHHHHHHhCCC--CEEEecCHHHHHHH-HHHHc----CCCCEEEEeCCCchHHHHHHHHhhHhhcC
Confidence 4455555667889999999999975 67777888999998 45555 7999999999999976665543 45569
Q ss_pred cEEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHhcCCEEEEecccccccccccCCCCCcc
Q psy15216 111 FRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVD 190 (2602)
Q Consensus 111 ~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~~g~~livD~a~a~g~~~~dl~~~~~D 190 (2602)
+++++++.+ |+++++++++++|++|++++|+||||.+.|+++|+++|++||+++|+|++|+.+..... ..+++|
T Consensus 132 ~~~~~v~~~-----d~~~l~~~i~~~~~~v~~e~~~np~G~~~~l~~i~~la~~~g~~livDe~~~~~~~~~~-~~~g~d 205 (400)
T 3nmy_A 132 LDFSFVDLT-----DPAAFKAAIRADTKMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVVDNTFASPMLQRP-LSLGAD 205 (400)
T ss_dssp CEEEEECTT-----SHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTHHHHCCG-GGGTCS
T ss_pred eEEEEECCC-----CHHHHHHHhccCCCEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCcccccCCh-hhcCCc
Confidence 999999865 89999999999999999999999999999999999999999999999999986543211 235789
Q ss_pred EEEeccccccCCCC--c-E-EEEE-ecCCCCcccceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy15216 191 LMSFSAHKIYGPKG--I-G-ALYI-RRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFL 265 (2602)
Q Consensus 191 ~~~~S~~K~~Gp~G--~-G-~l~~-~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l 265 (2602)
+++.|++|++|.+| + | +++. ++++.+.+..... ....+.+....+.+..+++ .+....++..++
T Consensus 206 iv~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~~~~~-------~~g~~~~~~~a~~~l~~l~----~l~~r~~~~~~~ 274 (400)
T 3nmy_A 206 LVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQN-------SIGGVQGPFDSFLALRGLK----TLPLRMRAHCEN 274 (400)
T ss_dssp EEEEETTTTTTCSSSCCCEEEEECSCHHHHHHHHHHHH-------HHCCBCCHHHHHHHHHHHT----THHHHHHHHHHH
T ss_pred EEEecCccccCCCCCcceeEEEEeCCHHHHHHHHHHHH-------hcCCCCCHHHHHHHHHhHh----HHHHHHHHHHHH
Confidence 99999999766443 3 5 3443 3434444433221 1112333333332223333 345566677888
Q ss_pred HHHHHHHHhhccCceEEe-CCC--CC-----------CCCceEEEEEccc--ChhHHHHHh--CCeEEcccccCCC---C
Q psy15216 266 QKRLYNGLMESIEEIYIN-GDM--NN-----------RIPHNLNISFNFI--EGESLLMAI--KDIAVSSGSACTS---A 324 (2602)
Q Consensus 266 ~~~l~~~L~~~~~g~~l~-~~~--~~-----------~~~~~~~~~~~~~--~~~~~~~~L--~gI~v~~g~~~~~---~ 324 (2602)
+..+.+.|.+ .|.+..+ -|. +. ....++.|.++.. ....++..+ .++.++.|..++- +
T Consensus 275 a~~l~~~L~~-~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~~~~~~~~~~~~~l~~~~~~~s~G~~~sl~~~p 353 (400)
T 3nmy_A 275 ALALAQWLET-HPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLKGGFDAAKRFCEKTELFTLAESLGGVESLVNHP 353 (400)
T ss_dssp HHHHHHHHTT-CTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHHHHHHHHHHHCSSSEECSCCCSSSCEEECT
T ss_pred HHHHHHHHHc-CCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeCCcHHHHHHHHHcCCcceEecCCCCCcceeeCc
Confidence 8888888877 5766533 221 11 1123444555431 234566666 3555555544321 1
Q ss_pred ----C-CChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHH
Q psy15216 325 ----S-LEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK 367 (2602)
Q Consensus 325 ----~-~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~ 367 (2602)
+ ..+.......|+++ +.+|+|+|..+.++.++.+.++|+
T Consensus 354 ~~~~~~~~~~~~~~~~gi~~----~liRlsvGle~~~dli~dl~~al~ 397 (400)
T 3nmy_A 354 AVMTHASIPVARREQLGISD----ALVRLSVGIEDLGDLRGDLERALV 397 (400)
T ss_dssp TTTTTTTSCHHHHHHHTCCT----TEEEEECCSSCHHHHHHHHHHHHC
T ss_pred cccccccCCHHHHHhcCCCc----CeEEEEeCcCCHHHHHHHHHHHHh
Confidence 1 11333455667763 899999999887777777766665
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.3e-18 Score=232.57 Aligned_cols=360 Identities=17% Similarity=0.159 Sum_probs=222.1
Q ss_pred cHHHHHHHHHhcCCCccccceeeeeceeeeccCCCCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHH
Q psy15216 1368 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVA 1447 (2602)
Q Consensus 1368 ~~~~v~~aL~~~g~~~~~~ei~~iP~~~v~L~~~~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia 1447 (2602)
.+......++..|..+.....+ ..|+|.......+.+.+++.+.+.... . .|.. .....++|++++
T Consensus 21 ~~~~~~~~~~~~g~~~~~~~~g-----~~ylD~~~~~~~~~v~~a~~~~~~~~~--~---~y~~----~~~~~~l~~~la 86 (467)
T 1ax4_A 21 SREEREAALKEAGYNPFLLPSS-----AVYIDLLTDSGTNAMSDHQWAAMITGD--E---AYAG----SRNYYDLKDKAK 86 (467)
T ss_dssp CHHHHHHHHHHTTSCGGGSCGG-----GCSEECSCSSSCCCEEHHHHHHHHTCC--C---CSSS----CHHHHHHHHHHH
T ss_pred chhHHHHHHHhcCcCcccCCCC-----ceeeecccCcCCHHHHHHHHHHHhhcc--c---cccc----CccHHHHHHHHH
Confidence 3455556777777776543322 234443222222566677766654311 0 1111 123568899999
Q ss_pred HHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCE---EEEcCCCCcchHHHHHHHHhCCcEEEEeccC---------
Q psy15216 1448 QLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKH---IITVQTEHKSVLDSIRKLENDGFRVTYLKPK--------- 1515 (2602)
Q Consensus 1448 ~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~---Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~--------- 1515 (2602)
++++. ++++||+|+|+|+++++.++......+||+ |+++.+.|+++...+... |.+++.++..
T Consensus 87 ~~~~~--~~v~~t~ggt~A~~~al~~~~~~~~~~Gd~~~~viv~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~ 161 (467)
T 1ax4_A 87 ELFNY--DYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVELN---GCKAINIVTEKAFDSETYD 161 (467)
T ss_dssp HHHCC--CEEEEESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEESSCCHHHHHHHHHT---TCEEEECBCGGGGCTTSCC
T ss_pred HHcCC--CcEEEcCCcHHHHHHHHHHHHHhhccCCCccceEEEeccccchhhHHHhcc---CCceecccccccccccccC
Confidence 99986 589999999999999999987100118998 999855555555555443 8888876532
Q ss_pred -CCCCcChhHHHhhccC----CceEEEEecccccc-ccccC---hHHHHHHhhhcCCEEEEeccccc-----------Cc
Q psy15216 1516 -NNGLITLSQLEEKICS----DTILVSVMLVNNEI-GVIQP---ILEIGELCRSKGVIFHCDAAQAV-----------GK 1575 (2602)
Q Consensus 1516 -~~~~id~d~l~~~i~~----~t~lv~l~~~~n~t-G~~~~---l~~I~~ia~~~gi~vivD~a~~~-----------g~ 1575 (2602)
.++.+|+++|++++++ +|++|++++++||+ |.++| +++|.++|++||+++|+|++|+. +.
T Consensus 162 ~~~~~~d~~~le~~i~~~~~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~ 241 (467)
T 1ax4_A 162 DWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKY 241 (467)
T ss_dssp TTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGG
T ss_pred CcccccCHHHHHHHHHhcCCCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcchhcccccccc
Confidence 1456899999999974 78999999999999 88876 67899999999999999998765 22
Q ss_pred ccccCCC------CCccEEEEccccccCCC-ceEEEEEe-c-CCCCccccccc--cCCccccCCCCCcchhHHHHHHHHH
Q psy15216 1576 IDINIQN------YKVDLMSFSAHKIYGPK-GIGALYIR-R-NPRTRIEAQIH--GGGHEYGLRSGTLATHQIVGMGEAF 1644 (2602)
Q Consensus 1576 ~~~~l~~------~~~D~~v~S~~K~~gp~-G~G~l~~~-~-~~~~~l~~~~~--g~~~~~~~~~gt~~~~~~~al~~aL 1644 (2602)
...++.. ..+|++++|+||.+|++ | |+++.+ + ++++.+..... ++. ...++.+...+.++..++
T Consensus 242 ~~~~~~~~~~~~~~~~d~~~~s~sK~~g~~~G-g~~~~~d~~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~a~~~~l 316 (467)
T 1ax4_A 242 KNATIKEVIFDMYKYADALTMSAKKDPLLNIG-GLVAIRDNEEIFTLARQRCVPMEGF----VTYGGLAGRDMAAMVQGL 316 (467)
T ss_dssp TTCCHHHHHHHHGGGCSEEEEETTSTTCCSSC-EEEEESSCHHHHHHHHHHHHHHTCS----TTTTTCCHHHHHHHHHHH
T ss_pred CCCchhhhhhhhccccceEEEeccccCCCCcc-eEEEeCCHHHHHHHHHhhccccccc----cccCCccchHHHHHHHHH
Confidence 2222211 13688899999988876 5 777777 4 55554433211 111 123445555555554455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEE-------Eec--CCcHHHHHhc---CCEEEc
Q psy15216 1645 RLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNIS-------FNF--IEGESLLMAI---KDIAVS 1712 (2602)
Q Consensus 1645 ~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~-------~~~--~~~~~~~~~L---~gI~v~ 1712 (2602)
+.... ++...+..++++++.+.|.+ +++.+..+.. .....+. ++. .+..++...| +||.+.
T Consensus 317 ~~~~~--~~~~~~~~~~~~~l~~~L~~--~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~ 389 (467)
T 1ax4_A 317 EEGTE--EEYLHYRIGQVKYLGDRLRE--AGIPIQYPTG---GHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAV 389 (467)
T ss_dssp HHTTC--HHHHHHHHHHHHHHHHHHHH--TTCCBCSSCC---SSEEEEESTTTCTTSCGGGCHHHHHHHHHHHHHCEECE
T ss_pred HHhhh--hhHHHHHHHHHHHHHHHHHh--CCCCcccCCC---ceEEEEehhhhccccccCCCCHHHHHHHHHHhcCceee
Confidence 42211 12333444667788888876 4665543321 1222233 211 1234555554 699998
Q ss_pred c-ccccCCCCCChhHHHHHcCCCccccCCeEEEecCCC-CCHHHHHHHHHHHHHh
Q psy15216 1713 S-GSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRF-TTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1713 ~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~-~t~edid~li~~L~~~ 1765 (2602)
+ |..+.... + ..|.......+++||+++.+ +|.+|+++++++|++.
T Consensus 390 ~~g~~~~~~~--~-----~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~ 437 (467)
T 1ax4_A 390 EIGSFLLGRD--P-----ATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGL 437 (467)
T ss_dssp EESHHHHCBC--T-----TTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHHHTT
T ss_pred ecCccccccc--c-----ccccccccccceEEEecccccCCHHHHHHHHHHHHHH
Confidence 7 54321100 0 00111111237999999854 8999999999999873
|
| >2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ... | Back alignment and structure |
|---|
Probab=99.78 E-value=2.7e-19 Score=233.80 Aligned_cols=310 Identities=15% Similarity=0.081 Sum_probs=212.0
Q ss_pred CCCCHHHHHHHHHHHhhc--cCCCCCccchhHHHHHHHHHHHHHHHHHHh---C---CCCCcEEE--eCCHHHHHHHHHH
Q psy15216 1403 TPIDPRVVDKMIPYLRVQ--FGNPASRNHIYGWTAEKAIEKARNEVAQLI---Y---ADPREIIW--TSGATESNNLAIK 1472 (2602)
Q Consensus 1403 ~~~~~~v~eal~~~l~~~--~~np~~~~~~~~~~~~~~~~~lr~~ia~~~---g---~~~~~iv~--t~gaT~al~~al~ 1472 (2602)
.+.++.+.+++.+.++.. ..++. .....++|+++++++ + +++++|++ |+|+++|+++++.
T Consensus 43 ~~~~~~v~~a~~~~~~~~~~~~y~~----------~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~~~g~~~a~~~~~~ 112 (396)
T 2q7w_A 43 TPVLTSVKKAEQYLLENETTKNYLG----------IDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAAD 112 (396)
T ss_dssp CCCCHHHHHHHHHHHHHCCCCCCCC----------TTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHH
T ss_pred ccCcHHHHHHHHhhcCcccccCCCC----------CCCCHHHHHHHHHHHhcCCCCccccccEEEEecccchhhHHHHHH
Confidence 356788999998877542 11111 112467899999988 2 24778998 9999999999988
Q ss_pred hhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccC--CCCCcChhHHHhhccC---CceEEEEecccccccc
Q psy15216 1473 GAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK--NNGLITLSQLEEKICS---DTILVSVMLVNNEIGV 1547 (2602)
Q Consensus 1473 ~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~--~~~~id~d~l~~~i~~---~t~lv~l~~~~n~tG~ 1547 (2602)
++. .+.+||+|+++.|+|+++...+... |++++.++.+ .++.+|++++++++++ +++++++++|+||||.
T Consensus 113 ~~~--~~~~gd~Vl~~~p~y~~~~~~~~~~---g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~ 187 (396)
T 2q7w_A 113 FLA--KNTSVKRVWVSNPSWPNHKSVFNSA---GLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGI 187 (396)
T ss_dssp HHH--HHSCCCEEEEEESCCTHHHHHHHHT---TCEEEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCC
T ss_pred HHH--HhCCCCEEEEcCCCchhHHHHHHHc---CCceEEEecccCCCCCcCHHHHHHHHHhCCCCCEEEEeCCCCCCCCC
Confidence 764 1269999999999999987766554 9999999885 4677999999999975 4788999999999999
Q ss_pred ccC---hHHHHHHhhhcCCEEEEecccccCcc-------ccc-CCCC-CccEEEEccccccCCCc--eEEEEE---ecCC
Q psy15216 1548 IQP---ILEIGELCRSKGVIFHCDAAQAVGKI-------DIN-IQNY-KVDLMSFSAHKIYGPKG--IGALYI---RRNP 1610 (2602)
Q Consensus 1548 ~~~---l~~I~~ia~~~gi~vivD~a~~~g~~-------~~~-l~~~-~~D~~v~S~~K~~gp~G--~G~l~~---~~~~ 1610 (2602)
++| +++|.++|++||+++|+|++|+.... ++. +... ..++++.|+||.+|++| +||+++ +++.
T Consensus 188 ~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~ 267 (396)
T 2q7w_A 188 DPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSXNFGLYNERVGACTLVAADSET 267 (396)
T ss_dssp CCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTTCGGGCCEEEEEECSSHHH
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEecccccccCCccchhHHHHHHHhcCCcEEEEEeccccccccccccceEEEEcCCHHH
Confidence 998 55799999999999999999864321 111 2111 24578889999999888 799997 3322
Q ss_pred CCccccccccCCccccCCCCCcchhHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHhhcCC--cEEEeCCC
Q psy15216 1611 RTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLA------RIEMKEELKRILFLQKRLYNGLMESIE--EIYINGDM 1682 (2602)
Q Consensus 1611 ~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~------~~~~~~~~~~~~~l~~~l~~~L~~~~~--gl~i~~~~ 1682 (2602)
++.+....... .....++++...+.++.++|+.. ..++++..+++.++++++.+.|.+..+ ++.+..+.
T Consensus 268 ~~~~~~~~~~~---~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 344 (396)
T 2q7w_A 268 VDRAFSQMKAA---IRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQ 344 (396)
T ss_dssp HHHHHHHHHHH---HHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTCCSCCTHHHHC
T ss_pred HHHHHHHHHHH---HhhccCCCCcHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceecCC
Confidence 22221111000 01122345666666666766532 245677888889999999999987211 24333221
Q ss_pred CCCCCceEEEEEecCCcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHH
Q psy15216 1683 NNRIPHNLNISFNFIEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIK 1760 (2602)
Q Consensus 1683 ~~~~~~~~~~~~~~~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~ 1760 (2602)
..++.+...+...+...+ +||.+++ .+||+++.. |.++++++++
T Consensus 345 ------~~~~~~~~~~~~~~~~~l~~~gv~v~~---------------------------~~Ris~~~~-~~e~i~~~~~ 390 (396)
T 2q7w_A 345 ------NGMFSFSGLTKEQVLRLREEFGVYAVA---------------------------SGRVNVAGM-TPDNMAPLCE 390 (396)
T ss_dssp ------CSSEEECCCCHHHHHHHHHHHCEECCT---------------------------TCEEEGGGC-CTTTHHHHHH
T ss_pred ------CceEEEecCCHHHHHHHHHhcCeeecC---------------------------CceEEEeec-CHHHHHHHHH
Confidence 112233333333343333 5888752 269999854 8899999999
Q ss_pred HHHH
Q psy15216 1761 LLKM 1764 (2602)
Q Consensus 1761 ~L~~ 1764 (2602)
+|++
T Consensus 391 ~l~~ 394 (396)
T 2q7w_A 391 AIVA 394 (396)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9986
|
| >1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-17 Score=220.08 Aligned_cols=317 Identities=8% Similarity=0.024 Sum_probs=214.3
Q ss_pred CCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhcc----
Q psy15216 1405 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKK---- 1480 (2602)
Q Consensus 1405 ~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~---- 1480 (2602)
.++.+++++.+.++....++.. .+. .....+++++++++++.++++|+||+|+++|++.++.++.. ..+
T Consensus 60 ~~p~v~~a~~~~~~~~~~~~~~-~~~-----~~~~~~l~~~la~~~~~~~~~v~~~~ggtea~~~ai~~~~~-~~~~~g~ 132 (429)
T 1s0a_A 60 NHPQLNAAMKSQIDAMSHVMFG-GIT-----HAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQ-YWQAKGE 132 (429)
T ss_dssp SCHHHHHHHHHHHHHCSCCCCS-SEE-----CHHHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHH-HHHHHTC
T ss_pred CCHHHHHHHHHHHHhccccccc-ccC-----CHHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHH-HhcccCC
Confidence 5789999999998764333221 111 12356788899999998888999999999999999987541 112
Q ss_pred CCCEEEEcCCCCcchHHHHHHHHh-----------CCcEEEEeccCC-----C-CCcChhHHHhhcc---CCceEEEEec
Q psy15216 1481 RGKHIITVQTEHKSVLDSIRKLEN-----------DGFRVTYLKPKN-----N-GLITLSQLEEKIC---SDTILVSVML 1540 (2602)
Q Consensus 1481 ~gd~Vlv~~~~~~s~~~~~~~~~~-----------~G~~v~~v~~~~-----~-~~id~d~l~~~i~---~~t~lv~l~~ 1540 (2602)
||++|+++++.|+.+......+.. ....+..++.+. . +.+|+++|+++++ +++++|++++
T Consensus 133 ~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~vi~~p 212 (429)
T 1s0a_A 133 ARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEP 212 (429)
T ss_dssp CCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHTTTEEEEEECS
T ss_pred CCCeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeCCCcccccccchHHHHHHHHHHHHhCCCCEEEEEEee
Confidence 689999999988775443322100 001344555431 2 3589999999997 5677887777
Q ss_pred c-ccccccccC----hHHHHHHhhhcCCEEEEecccc-cCcc----cccCCCCCccEEEEccccc-cCC-CceEEEEEec
Q psy15216 1541 V-NNEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKI----DINIQNYKVDLMSFSAHKI-YGP-KGIGALYIRR 1608 (2602)
Q Consensus 1541 ~-~n~tG~~~~----l~~I~~ia~~~gi~vivD~a~~-~g~~----~~~l~~~~~D~~v~S~~K~-~gp-~G~G~l~~~~ 1608 (2602)
+ +||||.+.| +++|.++|++||+++|+|++|+ +|.. .++.....+|++ |++|. .|+ -++|++++++
T Consensus 213 ~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g~~g~~~~~~~~~~~~d~~--t~sK~l~~G~~~iG~~~~~~ 290 (429)
T 1s0a_A 213 IVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPDIL--CLGKALTGGTMTLSATLTTR 290 (429)
T ss_dssp SEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGTSSSCCEEEEECH
T ss_pred cccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCcccchHHHhhhcCCCCCEE--EecccccCCCccceEEEeCH
Confidence 7 899998887 9999999999999999999997 4422 122223457776 45694 443 4589999987
Q ss_pred CCCCccccccccCCccccC-C--CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCcEEEeCCCC
Q psy15216 1609 NPRTRIEAQIHGGGHEYGL-R--SGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMES--IEEIYINGDMN 1683 (2602)
Q Consensus 1609 ~~~~~l~~~~~g~~~~~~~-~--~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~--~~gl~i~~~~~ 1683 (2602)
++++.+.+. + ...+ . ..+.+...+.+..++++.... +...++..++++++.++|.+. .+++....+ .
T Consensus 291 ~~~~~l~~~---~--~~~~~~~~t~~~n~~~~~a~~aal~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~-~ 362 (429)
T 1s0a_A 291 EVAETISNG---E--AGCFMHGPTFMGNPLACAAANASLAILES--GDWQQQVADIEVQLREQLAPARDAEMVADVRV-L 362 (429)
T ss_dssp HHHHHHHTS---T--TSSCSCCCTTTTCHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHGGGGGCTTEEEEEE-E
T ss_pred HHHHHhhcC---C--CcccccCCCCCCCHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHHHhcCCCEEEEEE-e
Confidence 765544321 0 0111 1 224566777777788875543 346677888899999998762 245542211 1
Q ss_pred CCCCceEEEEEec-CCcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHH
Q psy15216 1684 NRIPHNLNISFNF-IEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIK 1760 (2602)
Q Consensus 1684 ~~~~~~~~~~~~~-~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~ 1760 (2602)
..+..+.++. .+...+...| +||.+++. .+++||+++..+|++|++++++
T Consensus 363 ---g~~~~~~~~~~~~~~~l~~~l~~~Gi~v~~~------------------------~~~iRis~~~~~t~e~i~~~~~ 415 (429)
T 1s0a_A 363 ---GAIGVVETTHPVNMAALQKFFVEQGVWIRPF------------------------GKLIYLMPPYIILPQQLQRLTA 415 (429)
T ss_dssp ---TTEEEEEESSCBCHHHHHHHHHHTTEECCCB------------------------TTEEEECCCTTCCHHHHHHHHH
T ss_pred ---eEEEEEEECCcccHHHHHHHHHHCCCEEecc------------------------CCEEEEECCCCCCHHHHHHHHH
Confidence 1233444442 2455666655 78988642 1689999999999999999999
Q ss_pred HHHHh
Q psy15216 1761 LLKMK 1765 (2602)
Q Consensus 1761 ~L~~~ 1765 (2602)
+|++.
T Consensus 416 ~l~~~ 420 (429)
T 1s0a_A 416 AVNRA 420 (429)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99973
|
| >1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=4e-19 Score=233.35 Aligned_cols=309 Identities=13% Similarity=0.042 Sum_probs=212.3
Q ss_pred CCCCHHHHHHHHH-HHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHh-C-----CCCCcEEE--eCCHHHHHHHHHHh
Q psy15216 1403 TPIDPRVVDKMIP-YLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI-Y-----ADPREIIW--TSGATESNNLAIKG 1473 (2602)
Q Consensus 1403 ~~~~~~v~eal~~-~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~-g-----~~~~~iv~--t~gaT~al~~al~~ 1473 (2602)
.+.++.+.+++.+ .++.. ..+ .|.. .....++|+.+++++ + +++++|++ |+|+++|+++++..
T Consensus 46 ~~~~~~v~~a~~~~~~~~~--~~~--~y~~----~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~t~g~~~a~~~~~~~ 117 (412)
T 1yaa_A 46 PWVLPSVKAAEKLIHNDSS--YNH--EYLG----ITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKF 117 (412)
T ss_dssp BCCCHHHHHHHHHHHTCTT--CCC--CCCC----TTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHhhhcCcc--ccc--CCCC----CCCcHHHHHHHHHHHhcCCCCCCCcceEEEEeccchHhHHHHHHHH
Confidence 4567889999988 76521 000 0110 112567889999988 3 25789999 99999999998543
Q ss_pred hhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEecc-CC-CCCcChhHHHhhccCC---ceEEEEeccccccccc
Q psy15216 1474 AAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP-KN-NGLITLSQLEEKICSD---TILVSVMLVNNEIGVI 1548 (2602)
Q Consensus 1474 l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~-~~-~~~id~d~l~~~i~~~---t~lv~l~~~~n~tG~~ 1548 (2602)
+. .+++||+|++++|+|+++...+.. .|++++.++. ++ ++.+|+++|+++++++ +.++++++|+||||.+
T Consensus 118 ~~--~~~~gd~Vl~~~p~~~~~~~~~~~---~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~p~nPtG~~ 192 (412)
T 1yaa_A 118 FS--KFFPDKLVYLSKPTWANHMAIFEN---QGLKTATYPYWANETKSLDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLD 192 (412)
T ss_dssp HH--HHCTTCCEEEEESCCTTHHHHHHT---TTCCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEECSSCTTTCCC
T ss_pred HH--HhCCCCEEEEeCCCCccHHHHHHH---cCceEEEEeeecCCCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCC
Confidence 32 126999999999999998766554 4999999987 43 6779999999999753 4566669999999999
Q ss_pred cC---hHHHHHHhhhcCCEEEEecccccCc--------ccc-cCCCCC----ccEEEEccccccCCCc--eEEEE--E--
Q psy15216 1549 QP---ILEIGELCRSKGVIFHCDAAQAVGK--------IDI-NIQNYK----VDLMSFSAHKIYGPKG--IGALY--I-- 1606 (2602)
Q Consensus 1549 ~~---l~~I~~ia~~~gi~vivD~a~~~g~--------~~~-~l~~~~----~D~~v~S~~K~~gp~G--~G~l~--~-- 1606 (2602)
+| +++|.++|++||+++|+|++|+... .++ ++...+ .++++.|+||.+||+| +||++ .
T Consensus 193 ~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~GlriG~~~~~~~~ 272 (412)
T 1yaa_A 193 PTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYGERVGCFHLALTK 272 (412)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTSCCGGGCEEEEEEECCS
T ss_pred CCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHhcCCCCcceEEEeccCCCCCCcCCcceEEEEEecC
Confidence 88 5578899999999999999985321 122 222222 3577889999999888 79998 6
Q ss_pred ---ecC----CCCccccccccCCccccCCCCCcchhHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy15216 1607 ---RRN----PRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLA------RIEMKEELKRILFLQKRLYNGLMESI 1673 (2602)
Q Consensus 1607 ---~~~----~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~------~~~~~~~~~~~~~l~~~l~~~L~~~~ 1673 (2602)
+++ +++.+.... .....+++...+.++..+|+.. ..++++.++++.++++++.+.|.+..
T Consensus 273 ~~~~~~~~~~l~~~l~~~~-------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 345 (412)
T 1yaa_A 273 QAQNKTIKPAVTSQLAKII-------RSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLG 345 (412)
T ss_dssp CTTHHHHHHHHHHHHHHHH-------HTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHH-------hhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 443 343333211 1122355666677777777632 24678888999999999999998732
Q ss_pred C--cEEEeCCCCCCCCceEEEEEecCCcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCC
Q psy15216 1674 E--EIYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRF 1749 (2602)
Q Consensus 1674 ~--gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~ 1749 (2602)
+ ++.+..+.. .++.+...+...+...+ +||.+++ ++|||++.
T Consensus 346 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~gi~v~~---------------------------~~Ris~~~- 391 (412)
T 1yaa_A 346 TPGNWDHIVNQC------GMFSFTGLTPQMVKRLEETHAVYLVA---------------------------SGRASIAG- 391 (412)
T ss_dssp CSSCCTHHHHCC------SSEEECCCCHHHHHHHHHHHCEECCT---------------------------TSEEEGGG-
T ss_pred CCCCeeeeccCc------eEEEeeCCCHHHHHHHHHhCCEEecc---------------------------CcEEEEcc-
Confidence 1 244332211 12333344444443333 5888762 37999984
Q ss_pred CCHHHHHHHHHHHHHh
Q psy15216 1750 TTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1750 ~t~edid~li~~L~~~ 1765 (2602)
.+.+++++++++|++.
T Consensus 392 ~~~~~i~~~~~~l~~~ 407 (412)
T 1yaa_A 392 LNQGNVEYVAKAIDEV 407 (412)
T ss_dssp CCTTTHHHHHHHHHHH
T ss_pred CCHhHHHHHHHHHHHH
Confidence 5889999999999873
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=8.3e-18 Score=219.52 Aligned_cols=304 Identities=13% Similarity=0.133 Sum_probs=213.3
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCC
Q psy15216 1404 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK 1483 (2602)
Q Consensus 1404 ~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd 1483 (2602)
..++.+.+++.+.++... +... .+ ......+++++++++++++++++++|+|+++|+..++.++.. +.+|+
T Consensus 61 ~~~~~v~~a~~~~~~~~~-~~~~-~~-----~~~~~~~l~~~la~~~~~~~~~v~~~~gg~~a~~~al~~~~~--~~~~~ 131 (395)
T 1vef_A 61 HGNPEVVEAVKRQAETLM-AMPQ-TL-----PTPMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARA--HTGRK 131 (395)
T ss_dssp BTCHHHHHHHHHHHHHCC-CCCT-TS-----CCHHHHHHHHHHHHTSCTTEEEEEEESSHHHHHHHHHHHHHH--HHSCC
T ss_pred CCCHHHHHHHHHHHHhCC-CCcc-cc-----CCHHHHHHHHHHHHhcCCCcCEEEEcCcHHHHHHHHHHHHHH--HhCCC
Confidence 478899999999987532 2211 11 124678899999999988778999999999999999987631 24789
Q ss_pred EEEEcCCCCcchH-HHHHHHHhCCcE------------EEEeccCCCCCcChhHHHhhccCCceEEEEeccccccccccC
Q psy15216 1484 HIITVQTEHKSVL-DSIRKLENDGFR------------VTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP 1550 (2602)
Q Consensus 1484 ~Vlv~~~~~~s~~-~~~~~~~~~G~~------------v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~ 1550 (2602)
+|+++++.|++.. ...... |.+ +..++ ..|+++|++++++++++|++++++||||.+.|
T Consensus 132 ~vi~~~~~y~~~~~~~~~~~---g~~~~~~~~~p~~~~~~~~~-----~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~ 203 (395)
T 1vef_A 132 KFVAAMRGFSGRTMGSLSVT---WEPKYREPFLPLVEPVEFIP-----YNDVEALKRAVDEETAAVILEPVQGEGGVRPA 203 (395)
T ss_dssp EEEEETTCCCCSSHHHHHTC---CCHHHHGGGCSCSSCEEEEC-----TTCHHHHHHHCCTTEEEEEECSEETTTTSEEC
T ss_pred eEEEEcCCcCCCchhhhhhc---CCcccccccCCCCCCeeEeC-----CCcHHHHHHHhccCEEEEEEeCccCCCCccCC
Confidence 9999999887643 333322 433 22332 14899999999999999999999999999888
Q ss_pred ----hHHHHHHhhhcCCEEEEecccc-cCcc----cccCCCCCccEEEEccccccC-CCceEEEEEecCCCCcccccccc
Q psy15216 1551 ----ILEIGELCRSKGVIFHCDAAQA-VGKI----DINIQNYKVDLMSFSAHKIYG-PKGIGALYIRRNPRTRIEAQIHG 1620 (2602)
Q Consensus 1551 ----l~~I~~ia~~~gi~vivD~a~~-~g~~----~~~l~~~~~D~~v~S~~K~~g-p~G~G~l~~~~~~~~~l~~~~~g 1620 (2602)
+++|.++|++||+++|+|++|+ ++.. +++.....+|++ |+||.++ +.++|++++++++++.+.+.
T Consensus 204 ~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~g~~~G~~~~~~~~~~~l~~~--- 278 (395)
T 1vef_A 204 TPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPDIL--TLAKALGGGVPLGVAVMREEVARSMPKG--- 278 (395)
T ss_dssp CHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEE--EECGGGGTTSSCEEEEEEHHHHHTSCTT---
T ss_pred CHHHHHHHHHHHHHcCCEEEEEecccCCccCCchhHhhhcCCCCCEE--EEcccccCCCceEEEEehHHHHhhhccC---
Confidence 9999999999999999999998 3221 122223457866 6799554 34589999998765555431
Q ss_pred CCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc--EEEeCCCCCCCCceEEEEEecCC
Q psy15216 1621 GGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEE--IYINGDMNNRIPHNLNISFNFIE 1698 (2602)
Q Consensus 1621 ~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g--l~i~~~~~~~~~~~~~~~~~~~~ 1698 (2602)
. .....+++...+.++.++++.... +...++..++++++.+.|.+ ++. +... ++ ...+..+.++. +
T Consensus 279 ~----~~~~~~~~~~~~~a~~~al~~~~~--~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~-~~---~g~~~~~~~~~-~ 346 (395)
T 1vef_A 279 G----HGTTFGGNPLAMAAGVAAIRYLER--TRLWERAAELGPWFMEKLRA-IPSPKIREV-RG---MGLMVGLELKE-K 346 (395)
T ss_dssp S----SCCSSTTCHHHHHHHHHHHHHHHH--HTTHHHHHHHHHHHHHHHHT-SCCTTEEEE-EE---ETTEEEEEESS-C
T ss_pred C----cCCCcCCCHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHH-hhcCceEEE-EE---EEEEEEEEEcC-h
Confidence 0 111234566677777778875543 45678888899999999977 322 1111 10 12333444442 2
Q ss_pred cHHHHHhc---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1699 GESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1699 ~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
..++...| +||.++++. .+++||+++.+++.+++++++++|++
T Consensus 347 ~~~l~~~l~~~~gi~v~~~~-----------------------~~~iRi~~~~~~~~~~i~~~~~~l~~ 392 (395)
T 1vef_A 347 AAPYIARLEKEHRVLALQAG-----------------------PTVIRFLPPLVIEKEDLERVVEAVRA 392 (395)
T ss_dssp SHHHHHHHHHHHCEECEESS-----------------------TTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCeEEecCC-----------------------CCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 45555544 488887641 27899999989999999999999986
|
| >1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-18 Score=204.10 Aligned_cols=123 Identities=60% Similarity=0.942 Sum_probs=119.7
Q ss_pred eccccccceEEeeccEEEEEEecCCcCCCCcEEEEEeecccccceeEEEeecCcccccCCceeEEEEeeCCCCCCCCccE
Q psy15216 2407 LDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRAR 2486 (2602)
Q Consensus 2407 ~d~~~~~~gi~~~~~~~~~ii~k~t~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~~~~~~~g~~~ 2486 (2602)
.|++|++|||++.+|.|.+||+||++||++++..|+|..|||+.+.|.||||++..+.+|..||+|.|+|+||.|+|.++
T Consensus 1 ~Dv~p~slGie~~~g~~~~li~rnt~iP~~k~~~f~t~~d~Q~~v~i~v~qGe~~~~~~n~~Lg~f~l~gi~~~p~G~~~ 80 (227)
T 1u00_A 1 MDVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDCRSLARFALRGIPALPAGGAH 80 (227)
T ss_dssp CCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEECSSTTCCCEEEEEEECSSSBGGGSEEEEEEEECCCCCCSTTCSC
T ss_pred CCcccceEEEEEeCCEEEEEEeCcCccCceEEEEEEecCCCceEEEEEEEecCCccCCCCCEEEEEEEeCCCCCCCCceE
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEcCCccEEEEEEeecCCcEEEEEEecCCCCChHHHhc
Q psy15216 2487 IKVTYQVDADGLLSIFAYEKISGKKKFITIKPFYNMNLDEIKN 2529 (2602)
Q Consensus 2487 i~v~f~id~~g~l~V~a~~~~tg~~~~~~i~~~~~l~~~ei~~ 2529 (2602)
|+|+|+||.||+|+|+|.++.||++..++|...++||++||++
T Consensus 81 I~Vtf~iD~nGiL~V~a~d~~tg~~~~i~i~~~~~Ls~eei~~ 123 (227)
T 1u00_A 81 IRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYGLTDSEIAS 123 (227)
T ss_dssp EEEEEEECTTCCEEEEEEETTTCCEEEEEECCCSCCCHHHHHH
T ss_pred EEEEEEECCCCcEEEEeecccccccceEEEEeccCCCHHHHHH
Confidence 9999999999999999999999999999999988899999996
|
| >1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-17 Score=220.27 Aligned_cols=314 Identities=13% Similarity=0.111 Sum_probs=212.9
Q ss_pred CCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHh-CCCCCcEEEeCCHHHHHHHHHH---hccccc
Q psy15216 7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI-YADPREIIWTSGATESNNLAIK---GAAHFY 82 (2602)
Q Consensus 7 ~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~-g~~~~~Iv~t~g~T~al~~~~~---~l~~~~ 82 (2602)
+.+++.+.+++.+.+... .+... .+.......++++++++++ |..+++|++++|+++|+++++. ++.
T Consensus 56 g~~~~~v~~a~~~~~~~~-~~~~~-----~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~a~~~~--- 126 (426)
T 1sff_A 56 GHLHPKVVAAVEAQLKKL-SHTCF-----QVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAAT--- 126 (426)
T ss_dssp CBTCHHHHHHHHHHTTTC-SCCCT-----TTEECHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHH---
T ss_pred CCCCHHHHHHHHHHHHhC-CCccc-----cccCCHHHHHHHHHHHHhCCcccccEEEEeCchHHHHHHHHHHHHHhh---
Confidence 347889999999988642 11111 1222346788999999999 5233789999999999999988 454
Q ss_pred ccCCCEEEEcCCCCcccHH-HHHHHHhC-----Cc-----EEEEeccCC-----CCccChHHHHhhcc-----CCceEEE
Q psy15216 83 KKRGKHIITVQTEHKSVLD-SIRKLEND-----GF-----RVTYLKPKN-----NGLITLSQLEEKIC-----SDTILVS 141 (2602)
Q Consensus 83 ~~~gd~Vlv~~~~~~s~~~-~~~~~~~~-----G~-----~v~~v~~~~-----~~~ld~e~l~~~i~-----~~tklv~ 141 (2602)
++| .|++.++.|+++.. ++...... +. .++.++.+. ++.+|+++|+++++ +++++|+
T Consensus 127 -~~~-~vi~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~ 204 (426)
T 1sff_A 127 -KRS-GTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIV 204 (426)
T ss_dssp -TCC-EEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred -CCC-eEEEECCCcCCCchHhhhhcCCccccccccCCCCCCcEEeCCCccccccchHHHHHHHHHHHHhccCCCceEEEE
Confidence 565 88999999987654 33332110 11 266666643 23478999999986 4678887
Q ss_pred Eec-ccCccccccc----HHHHHHHHHhcCCEEEEecccc-cccc----cccCCCCCccEEEeccccccCCCC--cEEEE
Q psy15216 142 VML-VNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKI----DINIQNYKVDLMSFSAHKIYGPKG--IGALY 209 (2602)
Q Consensus 142 i~~-~~npTG~~~~----l~~I~~la~~~g~~livD~a~a-~g~~----~~dl~~~~~D~~~~S~~K~~Gp~G--~G~l~ 209 (2602)
+++ ++| ||.+.+ +++|.++|++||+++|+|++|+ ++.. .++.....+|++ |++|.+|+ | +||++
T Consensus 205 ~~p~~~n-tG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~di~--s~sK~~~~-GlriG~~~ 280 (426)
T 1sff_A 205 IEPVQGE-GGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAPDLT--TFAKSIAG-GFPLAGVT 280 (426)
T ss_dssp ECSBCTT-TTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTSCCSEE--EECGGGGT-SSCCEEEE
T ss_pred EecccCC-CCcccCCHHHHHHHHHHHHHcCCEEEEechhhccCcccchhhhhhcCCCCCEE--EEcccccC-CCceEEEE
Confidence 754 456 997777 9999999999999999999998 3211 122223346765 77898887 7 69999
Q ss_pred EecCCCCcccceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhc---cCceEEeCCC
Q psy15216 210 IRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMES---IEEIYINGDM 286 (2602)
Q Consensus 210 ~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~---~~g~~l~~~~ 286 (2602)
+++++++.+.+... ....+.+..+.+++.++|++... +...++..++++++.++|.+. ++.+....+.
T Consensus 281 ~~~~~~~~l~~~~~-------~~~~~~~~~~~~a~~aal~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 351 (426)
T 1sff_A 281 GRAEVMDAVAPGGL-------GGTYAGNPIACVAALEVLKVFEQ--ENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGL 351 (426)
T ss_dssp EEHHHHTTSCTTSB-------CCSSSSCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEE
T ss_pred EcHHHHhhhccCCc-------CcCCCCCHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEE
Confidence 99887776653211 11234567777777788886543 245667777788888877652 3333322111
Q ss_pred CCCCCceEEEEEcc---------cChhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCC
Q psy15216 287 NNRIPHNLNISFNF---------IEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTT 355 (2602)
Q Consensus 287 ~~~~~~~~~~~~~~---------~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t 355 (2602)
..++.+.+.. .+..++...| +||.++++..+ .+++||+++..++
T Consensus 352 ----g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~---------------------~~~iRi~~~~~~~ 406 (426)
T 1sff_A 352 ----GAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPY---------------------YNVLRILVPLTIE 406 (426)
T ss_dssp ----TTEEEEEEBGGGCTTSBCHHHHHHHHHHHHHTTEECEEESTT---------------------SCEEEECCCTTCC
T ss_pred ----EEEEEEEEecCccccCCChHHHHHHHHHHHHCCcEEecCCCC---------------------CCEEEEECCccCC
Confidence 2344555532 1234566655 79999877532 2789999998999
Q ss_pred HHHHHHHHHHHHhh
Q psy15216 356 EKEIDFTIKLLKMK 369 (2602)
Q Consensus 356 ~edid~li~~L~~~ 369 (2602)
++|+++++++|++.
T Consensus 407 ~~~i~~~~~~l~~~ 420 (426)
T 1sff_A 407 DAQIRQGLEIISQC 420 (426)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999864
|
| >1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=2.7e-18 Score=225.51 Aligned_cols=313 Identities=14% Similarity=0.070 Sum_probs=213.3
Q ss_pred CCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHh-CC-----CCCcEEE--eCCHHHHHHHHHHhh
Q psy15216 1403 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI-YA-----DPREIIW--TSGATESNNLAIKGA 1474 (2602)
Q Consensus 1403 ~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~-g~-----~~~~iv~--t~gaT~al~~al~~l 1474 (2602)
...++.+.+++.+.++.. ...+ .|. ......++|+++++++ +. ++++|++ |+|+++|+++++..+
T Consensus 47 ~~~~~~v~~a~~~~~~~~-~~~~--~y~----~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~ 119 (412)
T 1ajs_A 47 PWVLPVVRKVEQRIANNS-SLNH--EYL----PILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFL 119 (412)
T ss_dssp CCCCHHHHHHHHHHHTCT-TCCC--CCC----CTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHhhhCh-hhcc--CCC----CCCCCHHHHHHHHHHHhcCCCCccCCCcEEEEECCCcHHHHHHHHHHH
Confidence 346678899988877321 0000 010 0112468899999998 54 6789999 999999999996533
Q ss_pred hhhhccCC-----CEEEEcCCCCcchHHHHHHHHhCCcE-EEEeccC--CCCCcChhHHHhhccC---CceEEEEecccc
Q psy15216 1475 AHFYKKRG-----KHIITVQTEHKSVLDSIRKLENDGFR-VTYLKPK--NNGLITLSQLEEKICS---DTILVSVMLVNN 1543 (2602)
Q Consensus 1475 ~~~~~~~g-----d~Vlv~~~~~~s~~~~~~~~~~~G~~-v~~v~~~--~~~~id~d~l~~~i~~---~t~lv~l~~~~n 1543 (2602)
. .+++| |+|+++.|+|+++...+... |++ ++.++.+ .++.+|++++++++++ +++++++++|+|
T Consensus 120 ~--~~~~g~~~~~d~Vl~~~p~y~~~~~~~~~~---g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~n 194 (412)
T 1ajs_A 120 A--RWYNGTNNKDTPVYVSSPTWENHNGVFTTA---GFKDIRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHN 194 (412)
T ss_dssp H--HHSSSSSCCCSCEEEEESCCTHHHHHHHHT---TCSCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEESSSCT
T ss_pred H--HhCcCcCCCCCeEEEcCCCcHHHHHHHHHc---CCceeEEEeeecCCCCccCHHHHHHHHHhCCCCcEEEEECCCCC
Confidence 2 12689 99999999999987666554 888 9888874 4567999999999874 778898999999
Q ss_pred ccccccC---hHHHHHHhhhcCCEEEEeccccc-Ccc-------ccc-CCC-CCccEEEEccccccCCCc--eEEEEE--
Q psy15216 1544 EIGVIQP---ILEIGELCRSKGVIFHCDAAQAV-GKI-------DIN-IQN-YKVDLMSFSAHKIYGPKG--IGALYI-- 1606 (2602)
Q Consensus 1544 ~tG~~~~---l~~I~~ia~~~gi~vivD~a~~~-g~~-------~~~-l~~-~~~D~~v~S~~K~~gp~G--~G~l~~-- 1606 (2602)
|||.++| +++|.++|++||+++|+|++|.. +.. ++. +.. .+..+++.|+||.+|++| +||+++
T Consensus 195 ptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~ 274 (412)
T 1ajs_A 195 PTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNERVGNLTVVA 274 (412)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCEEEEEEEC
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHHHHhccCCcEEEEEecccccCCCCcceEEEEEec
Confidence 9999988 56899999999999999999652 221 111 211 123488899999999888 899999
Q ss_pred -ecCCCCccccccccCCccccCCCCCcchhHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHhhcCC---cE
Q psy15216 1607 -RRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLA------RIEMKEELKRILFLQKRLYNGLMESIE---EI 1676 (2602)
Q Consensus 1607 -~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~------~~~~~~~~~~~~~l~~~l~~~L~~~~~---gl 1676 (2602)
+++.++.+...... ......++++...+.++.++|+.. ...+++.+++++++++++.+.|.+ .. ++
T Consensus 275 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~ 350 (412)
T 1ajs_A 275 KEPDSILRVLSQMQK---IVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEA-LKTPGTW 350 (412)
T ss_dssp SSHHHHHHHHHHHHH---HHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCSSCC
T ss_pred CCHHHHHHHHHHHHH---HHhcccCCCChHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-hCCCCCe
Confidence 55422222111100 011222345666666777778733 345788889999999999999987 32 24
Q ss_pred EEeCCCCCCCCceEEEEEecCCcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHH
Q psy15216 1677 YINGDMNNRIPHNLNISFNFIEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKE 1754 (2602)
Q Consensus 1677 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~ed 1754 (2602)
.+..+. ...+.+...+...+...+ +||.+++ .+|++++. .+.++
T Consensus 351 ~~~~~~------~~~~~~~~~~~~~~~~~l~~~gv~v~~---------------------------~~Ris~~~-~~~~~ 396 (412)
T 1ajs_A 351 NHITDQ------IGMFSFTGLNPKQVEYLINQKHIYLLP---------------------------SGRINMCG-LTTKN 396 (412)
T ss_dssp HHHHHC------CSSEEECCCCHHHHHHHHHTTCEECCT---------------------------TSEEEGGG-CCTTT
T ss_pred eEEcCC------CceEEEeCCCHHHHHHHHHhCCEEecC---------------------------CcEEEeee-CCHHH
Confidence 333221 112333333333333333 6888762 15999984 48899
Q ss_pred HHHHHHHHHHh
Q psy15216 1755 IDFTIKLLKMK 1765 (2602)
Q Consensus 1755 id~li~~L~~~ 1765 (2602)
+++++++|++.
T Consensus 397 i~~~~~~l~~~ 407 (412)
T 1ajs_A 397 LDYVATSIHEA 407 (412)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999873
|
| >2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=4.2e-18 Score=226.81 Aligned_cols=301 Identities=17% Similarity=0.113 Sum_probs=199.3
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCC-cccHHHHHHHHhCCcEEEEeccC
Q psy15216 41 KAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEH-KSVLDSIRKLENDGFRVTYLKPK 119 (2602)
Q Consensus 41 ~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~-~s~~~~~~~~~~~G~~v~~v~~~ 119 (2602)
....++|+++++++|.+ ++++++|+++|+++++.++. ++|| +++.++| +++...+.. .|++++.++++
T Consensus 75 ~~~~~l~~~la~~~~~~--~~~~~~~gt~a~~~al~~l~----~~gd--i~~~~~~~~~~~~~~~~---~G~~~~~v~~~ 143 (456)
T 2ez2_A 75 ENFYHLERTVQELFGFK--HIVPTHQGRGAENLLSQLAI----KPGQ--YVAGNMYFTTTRYHQEK---NGAVFVDIVRD 143 (456)
T ss_dssp HHHHHHHHHHHHHHCCS--EEEEESSHHHHHHHHHHHHC----CTTC--EEEESSCCHHHHHHHHH---TTCEEEECBCG
T ss_pred hhHHHHHHHHHHHhCCC--cEEEeCCcHHHHHHHHHHhC----CCCC--EeccccccchhHHHHHH---cCCEEEEeccc
Confidence 35678999999999965 89999999999999999986 7999 7778888 666555554 49999999876
Q ss_pred C----------CCccChHHHHhhccCCc----eEEEEecccC-ccccccc---HHHHHHHHHhcCCEEEEecccccc---
Q psy15216 120 N----------NGLITLSQLEEKICSDT----ILVSVMLVNN-EIGVIQP---ILEIGELCRSKGVIFHCDAAQAVG--- 178 (2602)
Q Consensus 120 ~----------~~~ld~e~l~~~i~~~t----klv~i~~~~n-pTG~~~~---l~~I~~la~~~g~~livD~a~a~g--- 178 (2602)
+ ++.+|+++|++++++++ ++|++++|+| |||.++| +++|.++|++||+++|+|++|+.|
T Consensus 144 ~~~~~~~~~~~~~~~d~~~l~~~i~~~t~~~~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~ 223 (456)
T 2ez2_A 144 EAHDAGLNIAFKGDIDLKKLQKLIDEKGAENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCVENAY 223 (456)
T ss_dssp GGGCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHH
T ss_pred ccccccccccccCCCCHHHHHHHHHhccccceeEEEEeccCCCCCCccCCHHHHHHHHHHHHHcCCeEEEEccccccccc
Confidence 3 26789999999998766 8999999999 9999998 999999999999999999999875
Q ss_pred ------cccccCC--------CCCccEEEeccccccCCCCcEEEEE-ecCCCCcccceecCCCccccccccCcchhHHHH
Q psy15216 179 ------KIDINIQ--------NYKVDLMSFSAHKIYGPKGIGALYI-RRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVG 243 (2602)
Q Consensus 179 ------~~~~dl~--------~~~~D~~~~S~~K~~Gp~G~G~l~~-~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~a 243 (2602)
....+.. ....|++++|+||+++++..|+++. ++++++.+.+....+.. .. ..+..+...+.+
T Consensus 224 ~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~S~kk~~~~~~gG~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~a 301 (456)
T 2ez2_A 224 FIKEQEQGFENKSIAEIVHEMFSYADGCTMSGKKDCLVNIGGFLCMNDDEMFSSAKELVVVYEG-MP-SYGGLAGRDMEA 301 (456)
T ss_dssp HHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTCCSSCEEEEESCHHHHHHHHHHHHHHTC-CT-TTTTCCHHHHHH
T ss_pred cccccccccCCcchhhhhhhhcccCCEEEEeCcccCCCCceeEEEECCHHHHHHHHHHHhhccC-cc-cccCcchhHHHH
Confidence 1111110 1235888888999776433699988 45665555432211000 00 011222223322
Q ss_pred HHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEc----ccChhHH-----HHHh---
Q psy15216 244 MGEAFRLARIEM-KEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN----FIEGESL-----LMAI--- 310 (2602)
Q Consensus 244 l~~al~~~~~~~-~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~----~~~~~~~-----~~~L--- 310 (2602)
+ ++... ..+ +...++..++.+++.+.|.+ .++.+..+.. .....+.+. ..+..++ ...|
T Consensus 302 ~--a~~~~-~~~~~~~~~~~~~~~~~l~~~L~~--~g~~~~~p~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 373 (456)
T 2ez2_A 302 M--AIGLR-EAMQYEYIEHRVKQVRYLGDKLKA--AGVPIVEPVG---GHAVFLDARRFCEHLTQDEFPAQSLAASIYVE 373 (456)
T ss_dssp H--HHHHH-HHTCHHHHHHHHHHHHHHHHHHHH--TTCCBCSSCC---SSEEEEEHHHHTTTSCGGGCHHHHHHHHHHHH
T ss_pred H--HHHHH-HHhHHHHHHHHHHHHHHHHHHHhc--CCCccccCCC---ceEEEEEhHHhcCCCChhhccHHHHHHHHHHh
Confidence 1 22222 223 46667777888889999877 3665554322 233333332 2334444 4444
Q ss_pred CCeEEcc-cccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCC-CCHHHHHHHHHHHHhh
Q psy15216 311 KDIAVSS-GSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRF-TTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 311 ~gI~v~~-g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~-~t~edid~li~~L~~~ 369 (2602)
+||.+.+ |..|.+. .+. .|.......+++||+++.+ ++++|+++++++|++.
T Consensus 374 ~gv~~~~~g~~~~~~--~~~-----~g~~~~~~~~~iRis~~~~~~t~e~i~~~~~~l~~~ 427 (456)
T 2ez2_A 374 TGVRSMERGIISAGR--NNV-----TGEHHRPKLETVRLTIPRRVYTYAHMDVVADGIIKL 427 (456)
T ss_dssp HSEECEEESHHHHCB--CTT-----TCSBCCCSCCEEEEECCTTTCCHHHHHHHHHHHHHH
T ss_pred cCeeeeccccccccc--Ccc-----ccccccCCCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 4887543 4433221 000 0111111237899999876 8999999999999864
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.3e-18 Score=228.10 Aligned_cols=277 Identities=11% Similarity=0.058 Sum_probs=198.7
Q ss_pred HHHHHHHHHHHhC------CCCCcEEEeCCHHHHHHHHHHhc--------ccccccCCCEEEEcCCCCcccHHHHHHHHh
Q psy15216 43 IEKARNEVAQLIY------ADPREIIWTSGATESNNLAIKGA--------AHFYKKRGKHIITVQTEHKSVLDSIRKLEN 108 (2602)
Q Consensus 43 ~~~~r~~lA~~~g------~~~~~Iv~t~g~T~al~~~~~~l--------~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~ 108 (2602)
..++|+++|++++ +++++|++|+|+++|+++++.++ . ++||+|+++.|.|+++...++..
T Consensus 102 ~~~lr~aia~~~~~~~~~~~~~~~iv~t~G~~~al~~~~~~l~~~~~~~~~----~~Gd~Vlv~~P~y~~~~~~~~~~-- 175 (427)
T 2hox_A 102 SFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPD----APESKVVAHAPFYPVFREQTKYF-- 175 (427)
T ss_dssp CHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTT----SCCEEEEECSSCCHHHHHHHHHS--
T ss_pred hHHHHHHHHHHHHHhCCcCCCCCEEEEeCCHHHHHHHHHHHHhhccccccC----CCCCEEEEeCCCcccHHHHHHHc--
Confidence 4567888888775 57889999999999999999998 6 79999999999999987777655
Q ss_pred CCcEEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHhcCCEEEEeccccccccc-ccCCCC
Q psy15216 109 DGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKID-INIQNY 187 (2602)
Q Consensus 109 ~G~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~~g~~livD~a~a~g~~~-~dl~~~ 187 (2602)
|++++. +.+|+++|++++++++++|++++||||||.+++ + +++ ++..+.|+++..+..+ ..+. .
T Consensus 176 -g~~~~~------~~~d~~~l~~~~~~~~k~v~l~~p~NPtG~~~~-~----~l~--~~~~i~d~~~~~~~~s~~~~~-~ 240 (427)
T 2hox_A 176 -DKKGYV------WAGNAANYVNVSNPEQYIEMVTSPNNPEGLLRH-A----VIK--GCKSIYDMVYYWPHYTPIKYK-A 240 (427)
T ss_dssp -CBTTEE------EEEEGGGGTTCSCGGGEEEEEESSCTTTCCCCC-C----SST--TCEEEEECTTCSTTTSCCCSC-B
T ss_pred -CCeeee------ecCCHHHHHHhhcCCceEEEEcCCCCCcccccH-H----HHc--CCCEEEeecccCCCCCccccC-C
Confidence 766553 346889999999889999999999999999999 4 333 5678889876532211 2222 4
Q ss_pred CccEEEeccccccCCCC--cEEEEEe-cCCCCcccceecCCCccccccccCcchhHHHHHHHHHHHHH-----------H
Q psy15216 188 KVDLMSFSAHKIYGPKG--IGALYIR-RNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLAR-----------I 253 (2602)
Q Consensus 188 ~~D~~~~S~~K~~Gp~G--~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~-----------~ 253 (2602)
+.+++++|+||.+|++| +||++++ +++++.+..... ....+++.....++..+|+... .
T Consensus 241 ~~~i~~~S~SK~~g~~G~RiG~~~~~~~~l~~~l~~~~~-------~~~~~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~ 313 (427)
T 2hox_A 241 DEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMT-------KNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRD 313 (427)
T ss_dssp CCSEEEEEHHHHTSCGGGCCEEEEECCHHHHHHHHHHHH-------HHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTS
T ss_pred CceEEEEeChhcCCCCCceEEEEEECCHHHHHHHHHHHH-------hcCCCCCHHHHHHHHHHhhcchhhhccccchhHH
Confidence 57899999999999888 8999994 677666654331 1112344444444556665321 2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhccCceEE--eC-CCC--------CCCCceEEEEEcccChhHHHHHh---CCeEEcccc
Q psy15216 254 EMKEELKRILFLQKRLYNGLMESIEEIYI--NG-DMN--------NRIPHNLNISFNFIEGESLLMAI---KDIAVSSGS 319 (2602)
Q Consensus 254 ~~~~~~~~~~~l~~~l~~~L~~~~~g~~l--~~-~~~--------~~~~~~~~~~~~~~~~~~~~~~L---~gI~v~~g~ 319 (2602)
.+++.+++++++++++.+.|.+ .+++.+ +. +.. .....++++.++. +..++...+ +||.+++|.
T Consensus 314 ~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~-~~~~~~~~ll~~~gI~v~pg~ 391 (427)
T 2hox_A 314 LNTFGFKKLRERWVNITALLDQ-SDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEW-EEDKDCYQTFQNGRINTQNGV 391 (427)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-SSSEECCCCCSCEEETTTTEEECCCCSEEEEEECS-GGGCSHHHHHHHTTEECEEGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-CcCccccccccccccccccccCCCCceEEEEECCC-cHHHHHHHHHHHCCEEEcCCC
Confidence 3456778888899999999987 678775 22 210 1112333444443 333444443 699999998
Q ss_pred cCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 320 ACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 320 ~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
.|.. ..+++|||++ +++++++.++++|++.
T Consensus 392 ~f~~------------------~~~~~Ris~~--~~~e~l~~~l~~l~~~ 421 (427)
T 2hox_A 392 GFEA------------------SSRYVRLSLI--KTQDDFDQLMYYLKDM 421 (427)
T ss_dssp GGTS------------------CTTEEEEECS--SCHHHHHHHHHHHHHH
T ss_pred ccCC------------------CCCEEEEEec--CCHHHHHHHHHHHHHH
Confidence 7742 1389999998 4889999999999863
|
| >2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.3e-17 Score=218.79 Aligned_cols=308 Identities=15% Similarity=0.171 Sum_probs=211.6
Q ss_pred CCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccc---
Q psy15216 7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYK--- 83 (2602)
Q Consensus 7 ~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~--- 83 (2602)
+..++.+.+++.+.+.... +... .+ ..+..+++++++++++| ++++++++|+++|+++++.++.....
T Consensus 72 G~~~p~v~~ai~~~~~~~~-~~~~-~~-----~~~~~~~l~~~la~~~g--~~~v~~~~ggteA~~~al~~~~~~~~~~~ 142 (420)
T 2pb2_A 72 GHCHPALVEALKSQGETLW-HTSN-VF-----TNEPALRLGRKLIDATF--AERVLFMNSGTEANETAFKLARHYACVRH 142 (420)
T ss_dssp CBTCHHHHHHHHHHHTTCC-CCCT-TS-----CCHHHHHHHHHHHHHSS--CSEEEEESSHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHhcc-cccC-cc-----CCHHHHHHHHHHHhhCC--CCeEEEeCCHHHHHHHHHHHHHHHhhhcc
Confidence 3468999999999886532 2111 11 23467889999999998 46899999999999999998761000
Q ss_pred cCC-CEEEEcCCCCcccHHHHHHHHhCCcE------------EEEeccCCCCccChHHHHhhccCCceEEEEecccCccc
Q psy15216 84 KRG-KHIITVQTEHKSVLDSIRKLENDGFR------------VTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIG 150 (2602)
Q Consensus 84 ~~g-d~Vlv~~~~~~s~~~~~~~~~~~G~~------------v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG 150 (2602)
.+| ++|+++++.|++....+..+ .|.. +..++. .|+++|++++++++++|++++++|++|
T Consensus 143 ~~g~~~vi~~~~~yh~~~~~~~~~--~g~~~~~~~~~p~~~~~~~~~~-----~d~~~le~~i~~~~~~vi~~p~~~~gG 215 (420)
T 2pb2_A 143 SPFKTKIIAFHNAFHGRSLFTVSV--GGQPKYSDGFGPKPADIIHVPF-----NDLHAVKAVMDDHTCAVVVEPIQGEGG 215 (420)
T ss_dssp CTTCCEEEEETTCCCCSSHHHHHH--SSCHHHHTTSSSCCSCEEEECT-----TCHHHHHHHCCTTEEEEEECSEETTTT
T ss_pred CCCCCEEEEEeCCcCCcCHHHHHh--cCCccccccCCCCCCCeEEecC-----CCHHHHHHHhccCceEEEEeCCcCCCC
Confidence 056 59999999998764443322 1221 445543 389999999999999999999999888
Q ss_pred c----cccHHHHHHHHHhcCCEEEEecccc-cccc--c--ccCCCCCccEEEeccccccCCCC--cEEEEEecCCCCccc
Q psy15216 151 V----IQPILEIGELCRSKGVIFHCDAAQA-VGKI--D--INIQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIE 219 (2602)
Q Consensus 151 ~----~~~l~~I~~la~~~g~~livD~a~a-~g~~--~--~dl~~~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~ 219 (2602)
. ..++++|.++|++||+++|+|++|. ++.. . ++.....+|++ |++|.+| .| +|++++++++++.+.
T Consensus 216 ~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~~~~~~~~~~~~dii--t~sK~l~-~G~~iG~~~~~~~l~~~l~ 292 (420)
T 2pb2_A 216 VQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFAYMHYGVTPDIL--TSAKALG-GGFPVSAMLTTQEIASAFH 292 (420)
T ss_dssp SEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE--EECGGGG-TTSCCEEEEECHHHHTTCC
T ss_pred eecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCcHHHHHhcCCCCCeE--Eeccccc-CCCceEEEEEhHHHHHhhc
Confidence 6 2358899999999999999999995 2211 1 12223357877 5689766 34 899999987766665
Q ss_pred ceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhc---cCceEEeCCCCCCCCceEEE
Q psy15216 220 AQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMES---IEEIYINGDMNNRIPHNLNI 296 (2602)
Q Consensus 220 ~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~---~~g~~l~~~~~~~~~~~~~~ 296 (2602)
+...+ ...+.+..+.+++.++|+.... ++..++.+++++++.+.|.+. ++.+....+ ...++.+
T Consensus 293 ~~~~~-------~t~~~~~~~~aa~~a~L~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~----~g~~~~v 359 (420)
T 2pb2_A 293 VGSHG-------STYGGNPLACAVAGAAFDIINT--PEVLQGIHTKRQQFVQHLQAIDEQFDIFSDIRG----MGLLIGA 359 (420)
T ss_dssp ----C-------CEECCCHHHHHHHHHHHHHHSS--HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEE----ETTEEEE
T ss_pred CCCcC-------cccCcCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEe----cceEEEE
Confidence 42111 1224566667777777875433 567778888888888888662 233332211 1234445
Q ss_pred EEccc---ChhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 297 SFNFI---EGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 297 ~~~~~---~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
.++.. +..++...| +||.++++. .+++|++++...+++|+++++++|++.
T Consensus 360 ~~~~~~~~~~~~l~~~l~~~Gi~v~~~~-----------------------~~~iRl~~~~~~t~eei~~~~~~l~~~ 414 (420)
T 2pb2_A 360 ELKPKYKGRARDFLYAGAEAGVMVLNAG-----------------------ADVMRFAPSLVVEEADIHEGMQRFAQA 414 (420)
T ss_dssp EECGGGTTCHHHHHHHHHHTTEECEESS-----------------------TTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred EECCCchHHHHHHHHHHHHCCCEEEeCC-----------------------CCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 55432 355676666 799887642 278999998889999999999999864
|
| >2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.5e-17 Score=221.51 Aligned_cols=352 Identities=16% Similarity=0.090 Sum_probs=220.9
Q ss_pred cHHHHHHHHHhcCCCccccceeeeeceeeeccC----CCCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHH
Q psy15216 1368 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKD----ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKAR 1443 (2602)
Q Consensus 1368 ~~~~v~~aL~~~g~~~~~~ei~~iP~~~v~L~~----~~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr 1443 (2602)
.+....+.|+..|..+.....+ ..|+|. +..+.++.+.+++... .. .|.. .....++|
T Consensus 20 ~~~~~~~~~~~~g~~~~~l~~~-----~~ylD~~~~~~~~~~~~~~~~a~~~~------~~---~y~~----~~~~~~l~ 81 (456)
T 2ez2_A 20 PRDERLKKMQEAGYNTFLLNSK-----DIYIDLLTDSGTNAMSDKQWAGMMMG------DE---AYAG----SENFYHLE 81 (456)
T ss_dssp CHHHHHHHHHHTTTCGGGSCGG-----GCSEECSCSSSCCCCCHHHHHHHTTC------CC---CSSS----CHHHHHHH
T ss_pred CHHHHHHHHHHCCCCcccCCcc-----cceeeeccccCCccCCHHHHHHhhcc------hh---hccc----ChhHHHHH
Confidence 3445556778888776554322 233332 1224456666665411 10 1111 23467899
Q ss_pred HHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCC-cchHHHHHHHHhCCcEEEEeccCC------
Q psy15216 1444 NEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEH-KSVLDSIRKLENDGFRVTYLKPKN------ 1516 (2602)
Q Consensus 1444 ~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~-~s~~~~~~~~~~~G~~v~~v~~~~------ 1516 (2602)
++++++++.+ ++++|+|+|+|++.++.++. ++|| +++.++| +++...+... |++++.+++++
T Consensus 82 ~~la~~~~~~--~~~~~~~gt~a~~~al~~l~----~~gd--i~~~~~~~~~~~~~~~~~---G~~~~~v~~~~~~~~~~ 150 (456)
T 2ez2_A 82 RTVQELFGFK--HIVPTHQGRGAENLLSQLAI----KPGQ--YVAGNMYFTTTRYHQEKN---GAVFVDIVRDEAHDAGL 150 (456)
T ss_dssp HHHHHHHCCS--EEEEESSHHHHHHHHHHHHC----CTTC--EEEESSCCHHHHHHHHHT---TCEEEECBCGGGGCTTC
T ss_pred HHHHHHhCCC--cEEEeCCcHHHHHHHHHHhC----CCCC--EeccccccchhHHHHHHc---CCEEEEecccccccccc
Confidence 9999999964 79999999999999999886 7999 7788888 7766555444 99999998763
Q ss_pred ----CCCcChhHHHhhccCCc----eEEEEecccc-ccccccC---hHHHHHHhhhcCCEEEEecccccC---------c
Q psy15216 1517 ----NGLITLSQLEEKICSDT----ILVSVMLVNN-EIGVIQP---ILEIGELCRSKGVIFHCDAAQAVG---------K 1575 (2602)
Q Consensus 1517 ----~~~id~d~l~~~i~~~t----~lv~l~~~~n-~tG~~~~---l~~I~~ia~~~gi~vivD~a~~~g---------~ 1575 (2602)
++.+|+++|+++++++| ++|++++|+| |||.++| +++|.++|++||+++|+|++|+.| .
T Consensus 151 ~~~~~~~~d~~~l~~~i~~~t~~~~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~ 230 (456)
T 2ez2_A 151 NIAFKGDIDLKKLQKLIDEKGAENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQ 230 (456)
T ss_dssp CCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHST
T ss_pred cccccCCCCHHHHHHHHHhccccceeEEEEeccCCCCCCccCCHHHHHHHHHHHHHcCCeEEEEcccccccccccccccc
Confidence 26789999999998766 8999999999 9999998 999999999999999999999875 1
Q ss_pred ccccCC--------CCCccEEEEccccccCCCceEEEEE-ecCCCCccccccccCCccccCCCCCcchhHHHHHHHHHHH
Q psy15216 1576 IDINIQ--------NYKVDLMSFSAHKIYGPKGIGALYI-RRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRL 1646 (2602)
Q Consensus 1576 ~~~~l~--------~~~~D~~v~S~~K~~gp~G~G~l~~-~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~ 1646 (2602)
...+.. ....|++++|+||+++++.+|+++. ++++++.+......+.. . ...+..+...+.++ ++..
T Consensus 231 ~~~g~~~~~~~~~~~~~~d~~~~S~kk~~~~~~gG~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~a~--a~~~ 306 (456)
T 2ez2_A 231 GFENKSIAEIVHEMFSYADGCTMSGKKDCLVNIGGFLCMNDDEMFSSAKELVVVYEG-M-PSYGGLAGRDMEAM--AIGL 306 (456)
T ss_dssp TCTTSCHHHHHHHHHTTCSEEEEETTTTTCCSSCEEEEESCHHHHHHHHHHHHHHTC-C-TTTTTCCHHHHHHH--HHHH
T ss_pred ccCCcchhhhhhhhcccCCEEEEeCcccCCCCceeEEEECCHHHHHHHHHHHhhccC-c-ccccCcchhHHHHH--HHHH
Confidence 111111 1236888888999766432699988 45555554432211000 0 01122232233321 2222
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEe----cCCcHHH-----HHhc---CCEEEcc
Q psy15216 1647 ARIEM-KEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN----FIEGESL-----LMAI---KDIAVSS 1713 (2602)
Q Consensus 1647 ~~~~~-~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~----~~~~~~~-----~~~L---~gI~v~~ 1713 (2602)
. ..+ +...++...+.+++.+.|.+ .++.+..+.. .....+.+. ..+..++ ...| +||.+.+
T Consensus 307 ~-~~~~~~~~~~~~~~~~~l~~~L~~--~g~~~~~p~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~ 380 (456)
T 2ez2_A 307 R-EAMQYEYIEHRVKQVRYLGDKLKA--AGVPIVEPVG---GHAVFLDARRFCEHLTQDEFPAQSLAASIYVETGVRSME 380 (456)
T ss_dssp H-HHTCHHHHHHHHHHHHHHHHHHHH--TTCCBCSSCC---SSEEEEEHHHHTTTSCGGGCHHHHHHHHHHHHHSEECEE
T ss_pred H-HHhHHHHHHHHHHHHHHHHHHHhc--CCCccccCCC---ceEEEEEhHHhcCCCChhhccHHHHHHHHHHhcCeeeec
Confidence 2 222 45666777788889999987 3665543321 222333331 2233444 4433 5887544
Q ss_pred -ccccCCCCCChhHHHHHcCCCccccCCeEEEecCCC-CCHHHHHHHHHHHHHh
Q psy15216 1714 -GSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRF-TTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1714 -g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~-~t~edid~li~~L~~~ 1765 (2602)
|..|.+. .+. ++.......+++||+++.+ ++.+++++++++|++.
T Consensus 381 ~g~~~~~~--~~~-----~g~~~~~~~~~iRis~~~~~~t~e~i~~~~~~l~~~ 427 (456)
T 2ez2_A 381 RGIISAGR--NNV-----TGEHHRPKLETVRLTIPRRVYTYAHMDVVADGIIKL 427 (456)
T ss_dssp ESHHHHCB--CTT-----TCSBCCCSCCEEEEECCTTTCCHHHHHHHHHHHHHH
T ss_pred cccccccc--Ccc-----ccccccCCCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 4433211 000 0111111237899999987 8999999999999973
|
| >3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.4e-18 Score=221.30 Aligned_cols=286 Identities=15% Similarity=0.122 Sum_probs=195.3
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCC--EEEEcCCCCcccHHHHHHHHhCCcEEEEecc
Q psy15216 41 KAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK--HIITVQTEHKSVLDSIRKLENDGFRVTYLKP 118 (2602)
Q Consensus 41 ~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd--~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~ 118 (2602)
+...++++++++++|.+ ..++++|+++|+.+++.++. .+|| +|+++.+.|++...........|++++.++.
T Consensus 47 ~~~~~l~~~la~~~~~~--~~i~~~~G~~a~~~al~~~~----~~gd~~~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~ 120 (357)
T 3lws_A 47 AIIEPFEQKFADVLGMD--DAVFFPSGTMAQQVALRIWS----DETDNRTVAYHPLCHLEIHEQDGLKELHPIETILVGA 120 (357)
T ss_dssp TTHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHHH----HHHTCCEEEECTTCHHHHSSTTHHHHHSSCEEEECSC
T ss_pred hHHHHHHHHHHHHhCCC--cEEEecCcHHHHHHHHHHHh----hcCCCcEEEecccceeeeeccchhhhccCcEEEEecC
Confidence 35678999999999974 34666888999999998887 6777 7888877776654322223345999999984
Q ss_pred CCCCccChHHHHhhccCCceEEEEecccCcc-ccccc---HHHHHHHHHhcCCEEEEecccccc------cccccCCCCC
Q psy15216 119 KNNGLITLSQLEEKICSDTILVSVMLVNNEI-GVIQP---ILEIGELCRSKGVIFHCDAAQAVG------KIDINIQNYK 188 (2602)
Q Consensus 119 ~~~~~ld~e~l~~~i~~~tklv~i~~~~npT-G~~~~---l~~I~~la~~~g~~livD~a~a~g------~~~~dl~~~~ 188 (2602)
+++.+|+++|+++. +++++++++|+||| |.++| +++|.++|++||+++|+|++|..+ ....++. ..
T Consensus 121 -~~~~~d~~~l~~~~--~~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~-~~ 196 (357)
T 3lws_A 121 -ADRLMTLDEIKALP--DIACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKTAAEIA-GL 196 (357)
T ss_dssp -TTSCCCHHHHHTCC--SCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCHHHHH-TT
T ss_pred -CCCCcCHHHHhcCc--CcceEEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCChHHHH-hc
Confidence 56779999999884 49999999999998 99887 888999999999999999998621 1111111 23
Q ss_pred ccEEEecccccc-CCCCcEEEEEecCCCCcccceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy15216 189 VDLMSFSAHKIY-GPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQK 267 (2602)
Q Consensus 189 ~D~~~~S~~K~~-Gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~ 267 (2602)
.|++++|+||.+ ||.| |+++.++++++.+.......+ ....+.+..+.+++ ++++. +. +..+++.++++
T Consensus 197 ~d~~~~s~sK~~~~~~g-g~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-~~l~~---~~-~~~~~~~~~~~ 266 (357)
T 3lws_A 197 FDSIYISFYKGLGGIAG-AILAGPAAFCQTARIWKRRYG----GDLISLYPYIVSAD-YYYEL---RK-DRMGQYYEQAK 266 (357)
T ss_dssp SSEEEEESSSTTCCSSC-EEEEECHHHHHHHHHHHHHTT----CCCSCCHHHHHHHH-HHHHH---HT-TCHHHHHHHHH
T ss_pred CCEEEEeccccCCCCce-EEEEcCHHHHHHHHHHHHHhc----CCcccchHHHHHHH-HHHHH---HH-HHHHHHHHHHH
Confidence 688899999976 7887 999998877766653221000 00111222222222 34432 22 22334567788
Q ss_pred HHHHHHhhccCceEEe-CCCCCCCCceEEEEEccc---ChhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccC
Q psy15216 268 RLYNGLMESIEEIYIN-GDMNNRIPHNLNISFNFI---EGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDEL 341 (2602)
Q Consensus 268 ~l~~~L~~~~~g~~l~-~~~~~~~~~~~~~~~~~~---~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~ 341 (2602)
++.+.|.+ ++++++. .++. .+++.+.++.. +...+.+.| +||.+++|..+.++
T Consensus 267 ~l~~~L~~-~~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~g~~~~~~----------------- 325 (357)
T 3lws_A 267 QLAEQFNA-LPGVHTTPEVPV---SNMFHLHFDGQAADISPKLEQVQEETGLGFVGYLVDKDG----------------- 325 (357)
T ss_dssp HHHHHHHT-STTEEEESSSCS---SSEEEEEEESCHHHHHHHHHHHHHHHCEESCSCCEECSS-----------------
T ss_pred HHHHHHHh-CCCCeeccCCCc---ceEEEEEecCChHHHHHHHHHHHHhcCeEEecccccCCC-----------------
Confidence 89999987 7899884 3332 23455555542 234555555 79999988543321
Q ss_pred CCCeEEEecCCC---CCHHHHHHHHHHHHh
Q psy15216 342 AHSSIRFTIGRF---TTEKEIDFTIKLLKM 368 (2602)
Q Consensus 342 ~~~~iRis~~~~---~t~edid~li~~L~~ 368 (2602)
..++|++++.. .+.++++.+++.|.+
T Consensus 326 -~~~~r~~i~~~~~~~~~~~l~~al~~l~~ 354 (357)
T 3lws_A 326 -YCSTEISVGDAYGELDQQTRDAGFARLRQ 354 (357)
T ss_dssp -EEEEEEEBCTTGGGSCHHHHHHHHHHHHH
T ss_pred -ceEEEEEecchhhhcCHHHHHHHHHHHHH
Confidence 25899998743 578889988888875
|
| >2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.76 E-value=4.1e-17 Score=214.27 Aligned_cols=305 Identities=15% Similarity=0.126 Sum_probs=207.3
Q ss_pred CHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCC-CCcEEEeCCHHHHHHHHHHhcccccccCCCE
Q psy15216 10 DPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYAD-PREIIWTSGATESNNLAIKGAAHFYKKRGKH 88 (2602)
Q Consensus 10 p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~-~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~ 88 (2602)
++.+.+++.+.+.....+... .+ ..+...++++++++++|.+ +++|++++|+++|++.++.++.. -+||+
T Consensus 61 ~p~v~~a~~~~~~~~~~~~~~-~~-----~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~ea~~~ai~~~~~---~~~~~ 131 (419)
T 2eo5_A 61 HPEVIKIGIEQMQKLAHAAAN-DF-----YNIPQLELAKKLVTYSPGNFQKKVFFSNSGTEAIEASIKVVKN---TGRKY 131 (419)
T ss_dssp CHHHHHHHHHHHTTSCCCSCS-CS-----CCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHT---TSCCE
T ss_pred CHHHHHHHHHHHhhCcccccc-cc-----CCHHHHHHHHHHHHhCCCCcCCEEEEeCchHHHHHHHHHHHHH---hhCCc
Confidence 799999999988653211100 01 1234577889999999987 78999999999999999987651 13899
Q ss_pred EEEcCCCCcccHHHHHHHH------hC-----CcEEEEeccCCCCc----------------cChHHHH-hhcc-----C
Q psy15216 89 IITVQTEHKSVLDSIRKLE------ND-----GFRVTYLKPKNNGL----------------ITLSQLE-EKIC-----S 135 (2602)
Q Consensus 89 Vlv~~~~~~s~~~~~~~~~------~~-----G~~v~~v~~~~~~~----------------ld~e~l~-~~i~-----~ 135 (2602)
|++++|.|++....+..+. +. +..++.++.+..+. +|+++|+ ++++ +
T Consensus 132 vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~ 211 (419)
T 2eo5_A 132 IIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSELVNRVIEFIEDYIFVNLVPPE 211 (419)
T ss_dssp EEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCCCSSSCTTCCCTTTCHHHHHHHHHHHHHHTHHHHTCCGG
T ss_pred EEEECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEECCCccccccccccccccchhhHHHHHHHHHHHHHhhccCCC
Confidence 9999999886554443321 11 13567777654322 4688999 8886 3
Q ss_pred CceEEEEecccCccccccc----HHHHHHHHHhcCCEEEEecccc-ccccc----ccCCCCCccEEEeccccccCC--CC
Q psy15216 136 DTILVSVMLVNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKID----INIQNYKVDLMSFSAHKIYGP--KG 204 (2602)
Q Consensus 136 ~tklv~i~~~~npTG~~~~----l~~I~~la~~~g~~livD~a~a-~g~~~----~dl~~~~~D~~~~S~~K~~Gp--~G 204 (2602)
++++++++.++|+||.+.+ +++|.++|++||+++|+|++|+ ++... ++.....+|++ |++|.+|+ -+
T Consensus 212 ~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~~g~~g~~~~~~~~~~~~d~~--t~sK~~~~G~~r 289 (419)
T 2eo5_A 212 EVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGKLFAIENFNTVPDVI--TLAKALGGGIMP 289 (419)
T ss_dssp GEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGTTTSC
T ss_pred CEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCcchhhHHhcCCCCCEE--EecccccCCccc
Confidence 5666666555577898777 9999999999999999999997 44221 22223456766 67796653 44
Q ss_pred cEEEEEecCCCCcccceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeC
Q psy15216 205 IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYING 284 (2602)
Q Consensus 205 ~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~ 284 (2602)
+|+++++++++ .+ +... ....+.+.++++++.++|+.... ..++.+++++++.+.|.+ + +....
T Consensus 290 iG~~~~~~~~~-~~-~~~~-------~~t~~~n~~~~~aa~aal~~~~~----~~~~~~~~~~~l~~~L~~-~--~~~~~ 353 (419)
T 2eo5_A 290 IGATIFRKDLD-FK-PGMH-------SNTFGGNALACAIGSKVIDIVKD----LLPHVNEIGKIFAEELQG-L--ADDVR 353 (419)
T ss_dssp CEEEEEEGGGC-CC--------------CCCCCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHTT-S--SSEEE
T ss_pred eEEEEEchHhh-cC-Cccc-------CCCCCCCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH-h--hhheE
Confidence 79999998876 55 2110 11234577777777788875432 778888999999999976 3 11111
Q ss_pred CCCCCCCceEEEEE-cc-cChhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHH
Q psy15216 285 DMNNRIPHNLNISF-NF-IEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEID 360 (2602)
Q Consensus 285 ~~~~~~~~~~~~~~-~~-~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid 360 (2602)
+ ...++.+.+ +. .... +...| +||.++++. .+++||+++..++++|++
T Consensus 354 ~----~g~~~~i~~~~~~~~~~-~~~~l~~~Gv~v~~~~-----------------------~~~lRis~~~~~t~e~i~ 405 (419)
T 2eo5_A 354 G----IGLAWGLEYNEKKVRDR-IIGESFKRGLLLLPAG-----------------------RSAIRVIPPLVISEEEAK 405 (419)
T ss_dssp E----ETTEEEEECSCHHHHHH-HHHHHHHTTEECEEET-----------------------TTEEEECCCTTCCHHHHH
T ss_pred e----eeEEEEEEEecCccHHH-HHHHHHHCCCEEecCC-----------------------CCEEEEECCCCCCHHHHH
Confidence 1 123333444 21 1233 55555 799888642 178999999889999999
Q ss_pred HHHHHHHhh
Q psy15216 361 FTIKLLKMK 369 (2602)
Q Consensus 361 ~li~~L~~~ 369 (2602)
+++++|++.
T Consensus 406 ~~l~~l~~~ 414 (419)
T 2eo5_A 406 QGLDILKKV 414 (419)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999863
|
| >3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1e-17 Score=216.09 Aligned_cols=281 Identities=13% Similarity=0.079 Sum_probs=194.6
Q ss_pred HHHHHHHHHHhh-hcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEE--eCCHHHHHHHHHHhcccccccCCCE
Q psy15216 12 RVVDKMIPYLRV-QFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIW--TSGATESNNLAIKGAAHFYKKRGKH 88 (2602)
Q Consensus 12 ~v~~a~~~~l~~-~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~--t~g~T~al~~~~~~l~~~~~~~gd~ 88 (2602)
.|++++.++... ...++.. .|.++.. ..+++++.+|+++|++. .+++ ++|+++|+.+++.++. +|||+
T Consensus 33 ~vl~a~~~~~~~~~~~~~~~-~~~y~~~---~~~~Le~~lA~l~g~e~-alv~p~~~sGt~Ai~~al~all----~~GD~ 103 (409)
T 3jzl_A 33 KVLDAFQENKVSDFHFHPST-GYGYDDE---GRDTLERVYATVFKTEA-ALVRPQIISGTHAISTVLFGIL----RPDDE 103 (409)
T ss_dssp HHHHHHHHTTCCGGGGCCCC-TTCTTCH---HHHHHHHHHHHHHTCSE-EEEETTSCSHHHHHHHHHHHHC----CTTCE
T ss_pred HHHHHHHHhhhhhhccCCCc-CCCCChh---HHHHHHHHHHHHhCCCc-EEEECCCccHHHHHHHHHHHhc----CCCCE
Confidence 456666665422 1122322 3444433 36788999999999863 3443 8899999999999987 89999
Q ss_pred EEEcC-CCCcccHHHH-------HHHHhCCcEEEEeccCCCCccChHHHHhhccCCceEEEEec----ccCcccccccHH
Q psy15216 89 IITVQ-TEHKSVLDSI-------RKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVML----VNNEIGVIQPIL 156 (2602)
Q Consensus 89 Vlv~~-~~~~s~~~~~-------~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~----~~npTG~~~~l~ 156 (2602)
|+++. +.|+++...+ ..++..|++++.++.++++.+|+++++++++++|++|++++ |+||||.+.|++
T Consensus 104 Vl~~~~~~y~~~~~~~~~~g~~~~~l~~~G~~~~~v~~~~~g~~d~e~l~~ai~~~tklV~i~~s~g~p~nptg~v~~l~ 183 (409)
T 3jzl_A 104 LLYITGQPYDTLEEIVGIRKQGQGSLKDFHIGYSSVPLLENGDVDFPRIAKKMTPKTKMIGIQRSRGYADRPSFTIEKIK 183 (409)
T ss_dssp EEECSSSCCTTHHHHHTSSSSSSSCTGGGTCEEEECCCCTTSCCCHHHHHHHCCTTEEEEEEECSCTTSSSCCCCHHHHH
T ss_pred EEEeCCCCcHhHHHHHhcccchhhHHHHcCCEEEEeCCCCCCCcCHHHHHHhccCCCeEEEEECCCCCCCCCcCccccHH
Confidence 99998 9999987655 34456699999999988899999999999999999999999 999999999999
Q ss_pred HHHHHHHh--cCCEEEEecccccccccccCCCCCccEEEeccccccCCCC---cEEEEEecCCCCcccceecCCCccccc
Q psy15216 157 EIGELCRS--KGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKG---IGALYIRRNPRTRIEAQIHGGGHEYGL 231 (2602)
Q Consensus 157 ~I~~la~~--~g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K~~Gp~G---~G~l~~~~~~~~~l~~~~~g~~~~~~~ 231 (2602)
+|+++||+ ||+++++|++|+.+....+...+++|++++|+||.+|+.| .|+++.++++++.+.......+. ..
T Consensus 184 ~I~~la~~~~~~~~livD~a~~~~~~~~~p~~~g~Div~~S~sK~lgg~~~~~GG~v~~~~~li~~l~~~~~~~~~--g~ 261 (409)
T 3jzl_A 184 EMIVFVKNINPEVIVFVDNCYGEFVEYQEPPEVGADIIAGSLIKNPGGGLAKTGGYIAGKEALVDLCGYRLTTPGI--GR 261 (409)
T ss_dssp HHHHHHHHHCTTCEEEEECTTCTTTSSCCSGGGTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHHHHHSCTTT--GG
T ss_pred HHHHHHHhhCCCCEEEEeCCcccccccCCccccCCeEEEECccccCCccCCceEEEEEeCHHHHHHHHHHhccccc--cc
Confidence 99999999 9999999999987763333445678999999999776543 49999998887777542211000 01
Q ss_pred cccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCC-CCCceEEEEEccc-ChhHHHHH
Q psy15216 232 RSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNN-RIPHNLNISFNFI-EGESLLMA 309 (2602)
Q Consensus 232 ~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~-~~~~~~~~~~~~~-~~~~~~~~ 309 (2602)
..+ +......++..+++. .....++..+++.++.+.|.+ .++.+++.+++ +...+..+.+... ....+.+.
T Consensus 262 ~~g-~~~~~~~~~l~gl~~----~~~r~~~~~~~a~~la~~L~~--~g~~v~p~~~~~~~~~i~~i~l~~~~~~~~~~~~ 334 (409)
T 3jzl_A 262 EAG-ASLYSLLEMYQGFFL----APHVTAQAIKGARFTAAMLAE--FGVEADPVWDAPRTDLIQSVSFHNKEKMVAFAQA 334 (409)
T ss_dssp GCC-CCTTCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH--TTCEEESCTTSCCSSSCCEEECSCHHHHHHHHHH
T ss_pred ccc-ccHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHHh--CCCcccCCCCCCCccEEEEEEeCCHHHHHHHHHH
Confidence 111 111112223333332 345666778888889999987 35666543222 2222444444321 22345555
Q ss_pred h
Q psy15216 310 I 310 (2602)
Q Consensus 310 L 310 (2602)
|
T Consensus 335 L 335 (409)
T 3jzl_A 335 I 335 (409)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=9.5e-18 Score=216.67 Aligned_cols=256 Identities=14% Similarity=0.056 Sum_probs=184.8
Q ss_pred HHHHHHHHHHHh-hhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEE--eCCHHHHHHHHHHhcccccccCCC
Q psy15216 11 PRVVDKMIPYLR-VQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIW--TSGATESNNLAIKGAAHFYKKRGK 87 (2602)
Q Consensus 11 ~~v~~a~~~~l~-~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~--t~g~T~al~~~~~~l~~~~~~~gd 87 (2602)
+.|++++.++.. ....++. ..|.++.. ..+++++.+|+++|++.. +++ ++|+++|+.+++.++. +|||
T Consensus 46 ~~Vl~A~~~~~~~~~~~~~~-~gy~y~~~---~~~~Le~~lA~l~g~e~a-lv~p~~~sGt~Ai~~al~all----~pGD 116 (427)
T 3i16_A 46 LKVLNAFQEERISEAHFTNS-SGYGYGDI---GRDSLDAVYARVFNTESA-LVRPHFVNGTHALGAALFGNL----RPGN 116 (427)
T ss_dssp HHHHHHHHHTTCCGGGSCCC-CTTCTTCH---HHHHHHHHHHHHHTCSEE-EEETTCCSHHHHHHHHHHHHC----CTTC
T ss_pred HHHHHHHHHhchhHHhcCCC-CCCCCCHH---HHHHHHHHHHHHhCCcce-EEeCCCccHHHHHHHHHHHHh----CCCC
Confidence 346666665431 1122222 23444433 377889999999998633 554 8889999999999987 8999
Q ss_pred EEEEcC-CCCcccHHHH--------HHHHhCCcEEEEeccCCCCccChHHHHhhcc--CCceEEEEec----ccCccccc
Q psy15216 88 HIITVQ-TEHKSVLDSI--------RKLENDGFRVTYLKPKNNGLITLSQLEEKIC--SDTILVSVML----VNNEIGVI 152 (2602)
Q Consensus 88 ~Vlv~~-~~~~s~~~~~--------~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~--~~tklv~i~~----~~npTG~~ 152 (2602)
+|++++ +.|+++...+ ..+...|++++.++.++++.+|+++++++++ ++|++|++++ |+||||.+
T Consensus 117 ~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~~~~g~~D~e~l~~~l~~~~~tklV~i~~s~~~p~nptg~i 196 (427)
T 3i16_A 117 TMLSVCGEPYDTLHDVIGITENSNMGSLKEFGINYKQVDLKEDGKPNLEEIEKVLKEDESITLVHIQRSTGYGWRRALLI 196 (427)
T ss_dssp EEEESSSSCCGGGHHHHTCSCCCSSCCTGGGTCEEEECCCCTTSSCCHHHHHHHHHTCTTEEEEEEECSCCSSSSCCCCH
T ss_pred EEEEeCCCccHHHHHHHhccccchHHHHHHcCCEEEEecCccCCCcCHHHHHHHhhCCCCCEEEEEEcCCCCCCCCcccH
Confidence 999998 9999887655 4445669999999998888999999999998 8999999999 99999999
Q ss_pred ccHHHHHHHHHh--cCCEEEEecccccccccccCCCCCccEEEeccccccCCC---CcEEEEEecCCCCcccceecCCCc
Q psy15216 153 QPILEIGELCRS--KGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPK---GIGALYIRRNPRTRIEAQIHGGGH 227 (2602)
Q Consensus 153 ~~l~~I~~la~~--~g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K~~Gp~---G~G~l~~~~~~~~~l~~~~~g~~~ 227 (2602)
.|+++|+++|++ +|+++++|++|+.+........+++|++++|+||.+|+. ..|+++++++++++++......
T Consensus 197 ~dl~~i~~la~~~~~g~~livD~a~~~~~~~~~p~~~gaDiv~~S~sK~lgg~g~~~gG~i~~~~~li~~l~~~~~~~-- 274 (427)
T 3i16_A 197 EDIKSIVDCVKNIRKDIICFVDNCYGEFMDTKEPTDVGADLIAGSLIKNIGGGIAPTGGYLAGTKDCIEKTSYRLTVP-- 274 (427)
T ss_dssp HHHHHHHHHHHHHCTTSEEEEECTTTTTSSSSCGGGGTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHHHHSCT--
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCCccccccCCccccCCeEEEecCcccCCCCCCceEEEEEECHHHHHHHHHhcccC--
Confidence 999999999999 999999999998776333333467899999999977753 3599999988887776532110
Q ss_pred ccccccc-CcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCC
Q psy15216 228 EYGLRSG-TLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGD 285 (2602)
Q Consensus 228 ~~~~~~g-t~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~ 285 (2602)
.+... .+.......+..+++ ......++..+++.++.+.|.+ .++.+++.
T Consensus 275 --~~g~~~~~~~~~a~~~l~gl~----~~~~r~~~~~~~a~~la~~L~~--~g~~V~p~ 325 (427)
T 3i16_A 275 --GIGGECGSTFGVVRSMYQGLF----LAPHISMEALKGAILCSRIMEL--AGFEVMPK 325 (427)
T ss_dssp --TTGGGCCCCTTCHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH--TTCEEESC
T ss_pred --ccCccCCccHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHh--CCCeecCC
Confidence 00000 111211222223332 2346667778888888888877 35566543
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=8.2e-18 Score=226.03 Aligned_cols=286 Identities=12% Similarity=0.032 Sum_probs=187.6
Q ss_pred CCcEEEeCCHHHHHHHHHHhccc-ccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCC--CCccChHHHHhhcc
Q psy15216 58 PREIIWTSGATESNNLAIKGAAH-FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKIC 134 (2602)
Q Consensus 58 ~~~Iv~t~g~T~al~~~~~~l~~-~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~ld~e~l~~~i~ 134 (2602)
+++|++|+|+++|+.+++.++.. .+.++||.|++++|.|+.+...+.. ...|++++.++.++ ++.+|+++|+++++
T Consensus 165 ~~~I~~t~G~~eal~~~~~~l~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~-~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~ 243 (546)
T 2zy4_A 165 SVNLFAVEGGTAAMAYIFESLKLNGLLKAGDKVAIGMPVFTPYIEIPEL-AQYALEEVAINADPSLNWQYPDSELDKLKD 243 (546)
T ss_dssp GEEEEEEEHHHHHHHHHHHHHHHTTSSCTTCEEEEEESCCHHHHHHHHS-TTSCCEEEEEECBGGGTTBCCHHHHGGGGS
T ss_pred cceEEEECCHHHHHHHHHHHhhhhhcCCCCCEEEEeCCCCccHHHHHHH-cCCCcEEEEEecCcccCCCCCHHHHHHhhC
Confidence 57899999999999999988410 0137999999999999998766543 34578999998765 35689999999998
Q ss_pred CCceEEEEecccCcccccccH---HHHHHHH--HhcCCEEEEecccccccc-cccCCC--CCccEEEeccccccCCCC--
Q psy15216 135 SDTILVSVMLVNNEIGVIQPI---LEIGELC--RSKGVIFHCDAAQAVGKI-DINIQN--YKVDLMSFSAHKIYGPKG-- 204 (2602)
Q Consensus 135 ~~tklv~i~~~~npTG~~~~l---~~I~~la--~~~g~~livD~a~a~g~~-~~dl~~--~~~D~~~~S~~K~~Gp~G-- 204 (2602)
++++++++++|+||||.+++. ++|.++| +++|+++|+|++|+.... +..+.. .+.++++.|+||.+|++|
T Consensus 244 ~~~k~v~l~~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~~~s~~~~~~~~~i~~~S~SK~~g~~GlR 323 (546)
T 2zy4_A 244 PAIKIFFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADDFQSLFAICPENTLLVYSFSKYFGATGWR 323 (546)
T ss_dssp TTEEEEEEESSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTTCCCHHHHCGGGEEEEEESTTTTTCGGGC
T ss_pred CCCeEEEEECCCCCCCccCCHHHHHHHHHHHHhccCCcEEEEeCcchhhcccCcCHHHhCCCCEEEEEeCccccCCCCcc
Confidence 899999999999999999984 5577888 789999999999974332 111111 135688999999999888
Q ss_pred cEEEEEecC-CCCcccc------------eecCCCc-cc----------------cccccCcchhHHHHHH-HHH-HHH-
Q psy15216 205 IGALYIRRN-PRTRIEA------------QIHGGGH-EY----------------GLRSGTLATHQIVGMG-EAF-RLA- 251 (2602)
Q Consensus 205 ~G~l~~~~~-~~~~l~~------------~~~g~~~-~~----------------~~~~gt~~~~~~~al~-~al-~~~- 251 (2602)
+||++++++ +++.+.. .+..+.. +. .....+.+.+...++. .++ .+.
T Consensus 324 iG~~~~~~~~l~~~l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~a~~a~~all~ 403 (546)
T 2zy4_A 324 LGVVAAHQQNVFDLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMALFSLFALMD 403 (546)
T ss_dssp EEEEEEESSCHHHHHHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGCSSCHHHHHHHHHHHHHHHHC
T ss_pred eEEEEECCHHHHHHHHhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhccCCCCcHHHHHHHHHHHHHHHh
Confidence 799999885 5444421 0000000 00 0111233333333321 111 222
Q ss_pred --HHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc-----------------cChhHH-HHHh-
Q psy15216 252 --RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-----------------IEGESL-LMAI- 310 (2602)
Q Consensus 252 --~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~-----------------~~~~~~-~~~L- 310 (2602)
..+.++.++.++++++.+.+.|. . ++....+ . ....+.+.++. .+..++ ...+
T Consensus 404 ~~~~~~~~~r~~~~~r~~~l~~~L~--~-~~~~~~~-~--~~~~l~~~l~~~~~~~~~~~~~~wl~~~~~~~~~l~~ll~ 477 (546)
T 2zy4_A 404 EADEYKHTLKQLIRRRETTLYRELG--M-PPLRDEN-A--VDYYTLIDLQDVTAKLYGEAFSEWAVKQSSTGDMLFRIAD 477 (546)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHGGGT--S-SCCCCTT-B--CCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhcC--C-CcccCCC-C--eeEEEEEEHHHhhcccccHHHHHHhhccCCHHHHHHHHHH
Confidence 23456667777777777777763 1 2221111 1 11222333321 112232 3333
Q ss_pred -CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 311 -KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 311 -~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
+||.+.+|..|..+ .+++||+++ ..+++++++++++|++.
T Consensus 478 ~~gV~v~pG~~F~~~------------------~~~iRis~~-~~~~e~i~~~~~~l~~~ 518 (546)
T 2zy4_A 478 ETGIVLLPGRGFGSN------------------RPSGRASLA-NLNEYEYAAIGRALRKM 518 (546)
T ss_dssp HHSCCCEESSCTTCS------------------SCEEEEESS-SSCHHHHHHHHHHHHHH
T ss_pred HCCEEEeCccccCCC------------------CCeEEEEec-cCCHHHHHHHHHHHHHH
Confidence 69999999877542 378999997 45789999999999964
|
| >4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1.3e-17 Score=218.75 Aligned_cols=307 Identities=14% Similarity=0.132 Sum_probs=211.2
Q ss_pred CCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhh---ccC
Q psy15216 1405 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFY---KKR 1481 (2602)
Q Consensus 1405 ~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~---~~~ 1481 (2602)
.++.+.+++.+.+.....++.. + ......+++++++++++.+ ++++|+|+|+|++.++.++.... -++
T Consensus 56 ~~p~v~~a~~~~~~~~~~~~~~--~-----~~~~~~~l~~~la~~~~~~--~v~~~~gg~~a~~~al~~~~~~~~~~~~~ 126 (406)
T 4adb_A 56 AHPELREALNEQASKFWHTGNG--Y-----TNEPVLRLAKKLIDATFAD--RVFFCNSGAEANEAALKLARKFAHDRYGS 126 (406)
T ss_dssp TCHHHHHHHHHHHTTCSCCCTT--S-----CCHHHHHHHHHHHHHSSCS--EEEEESSHHHHHHHHHHHHHHHHHHHTCT
T ss_pred CCHHHHHHHHHHHHhcccccCC--c-----CCHHHHHHHHHHHhhCCCC--eEEEeCcHHHHHHHHHHHHHHHHHhcCCC
Confidence 4788999999988764322211 1 1234678999999999854 89999999999999999875100 005
Q ss_pred C-CEEEEcCCCCcchHHHHHHHHhC----------CcEEEEeccCCCCCcChhHHHhhccCCceEEEEecccccccccc-
Q psy15216 1482 G-KHIITVQTEHKSVLDSIRKLEND----------GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQ- 1549 (2602)
Q Consensus 1482 g-d~Vlv~~~~~~s~~~~~~~~~~~----------G~~v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~- 1549 (2602)
| |+|+++++.|+++......+... +..+..++. .|+++|++++++++++|+++ |+||+|.++
T Consensus 127 g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~l~~~~~~v~~~-p~np~g~~~~ 200 (406)
T 4adb_A 127 HKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAY-----NDINSASALIDDSTCAVIVE-PIQGEGGVVP 200 (406)
T ss_dssp TCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECT-----TCHHHHHTTCSTTEEEEEEC-SEETTTTSEE
T ss_pred CCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCC-----CcHHHHHHHhcCCeEEEEEe-CCcCCCCCcc
Confidence 5 99999999999986555544211 023333332 48999999999999999999 899999776
Q ss_pred ----ChHHHHHHhhhcCCEEEEecccc-cCcc----cccCCCCCccEEEEccccccCCCc--eEEEEEecCCCCcccccc
Q psy15216 1550 ----PILEIGELCRSKGVIFHCDAAQA-VGKI----DINIQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQI 1618 (2602)
Q Consensus 1550 ----~l~~I~~ia~~~gi~vivD~a~~-~g~~----~~~l~~~~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~ 1618 (2602)
++++|.++|++||+++|+|++|+ ++.. ..+.....+|++ ++||.++ +| +|++++++++++.+.+..
T Consensus 201 ~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~--t~sK~~~-~G~r~G~~~~~~~~~~~~~~~~ 277 (406)
T 4adb_A 201 ASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDLL--TTAKALG-GGFPVGALLATEECARVMTVGT 277 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE--EECGGGG-TTSCCEEEEECHHHHHTCCTTS
T ss_pred CCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhHHHHhcCCCCCEE--Eechhhc-CCCCeEEEEEcHHHHhhhccCC
Confidence 48999999999999999999996 3211 112223346777 4689766 45 899999987766665432
Q ss_pred ccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---CcEEEeCCCCCCCCceEEEEEe
Q psy15216 1619 HGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESI---EEIYINGDMNNRIPHNLNISFN 1695 (2602)
Q Consensus 1619 ~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~---~gl~i~~~~~~~~~~~~~~~~~ 1695 (2602)
.+ ...+.+...+.++.++++.... ++..++++++++++.+.|.+.. +.+.-.. ..+....+.++
T Consensus 278 ~~-------~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~----~~g~~~~~~~~ 344 (406)
T 4adb_A 278 HG-------TTYGGNPLASAVAGKVLELINT--PEMLNGVKQRHDWFVERLNTINHRYGLFSEVR----GLGLLIGCVLN 344 (406)
T ss_dssp SC-------CSSTTCHHHHHHHHHHHHHHSS--HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEE----EETTEEEEEEC
T ss_pred cC-------CCCCCCHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHHhCCCceEEE----EEEEEEEEEEe
Confidence 11 1224556666666677765432 5677778888888888887621 1111110 01234444554
Q ss_pred cC---CcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1696 FI---EGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1696 ~~---~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
.. +..++...| +||.++++. .+++|++++..+|.+++++++++|++.
T Consensus 345 ~~~~~~~~~~~~~l~~~gi~v~~~~-----------------------~~~iRi~~~~~~~~e~i~~~~~~l~~~ 396 (406)
T 4adb_A 345 ADYAGQAKQISQEAAKAGVMVLIAG-----------------------GNVVRFAPALNVSEEEVTTGLDRFAAA 396 (406)
T ss_dssp TTTTTCHHHHHHHHHHTTEECEESS-----------------------TTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHCCcEEeecC-----------------------CCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 32 355666666 799987643 178999999999999999999999973
|
| >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=4.8e-17 Score=212.40 Aligned_cols=305 Identities=17% Similarity=0.168 Sum_probs=209.1
Q ss_pred CCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhc--cC-
Q psy15216 1405 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYK--KR- 1481 (2602)
Q Consensus 1405 ~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~--~~- 1481 (2602)
.++.+.+++.+.++.. .++.. .+ ......++++++++++| ++++++++|+++|+..++.++..... ++
T Consensus 57 ~~~~v~~a~~~~~~~~-~~~~~-~~-----~~~~~~~l~~~la~~~g--~~~v~~~~gg~~a~~~al~~~~~~~~~~~~~ 127 (397)
T 2ord_A 57 SHPRLVEAIKDQAEKL-IHCSN-LF-----WNRPQMELAELLSKNTF--GGKVFFANTGTEANEAAIKIARKYGKKKSEK 127 (397)
T ss_dssp TCHHHHHHHHHHHHHC-SCCCT-TS-----EEHHHHHHHHHHHHTTT--SCEEEEESSHHHHHHHHHHHHHHHHHHHCTT
T ss_pred CCHHHHHHHHHHHHhc-ccCcc-cc-----CCHHHHHHHHHHHHhcC--CCeEEEeCCHHHHHHHHHHHHHHHhhcCCCC
Confidence 5788999999988763 22221 11 12457889999999998 46899999999999999988751000 04
Q ss_pred CCEEEEcCCCCcch-HHHHHHHHhCCcE------------EEEeccCCCCCcChhHHHhhccCCceEEEEecccccccc-
Q psy15216 1482 GKHIITVQTEHKSV-LDSIRKLENDGFR------------VTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGV- 1547 (2602)
Q Consensus 1482 gd~Vlv~~~~~~s~-~~~~~~~~~~G~~------------v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~- 1547 (2602)
+++|+++++.|++. ..++... |.+ +..++. .|+++|++++++++++|++++++||||.
T Consensus 128 ~~~vi~~~~~yh~~~~~~~~~~---g~~~~~~~~~p~~~~~~~~~~-----~d~~~l~~~l~~~~~~v~~~~~~nptG~~ 199 (397)
T 2ord_A 128 KYRILSAHNSFHGRTLGSLTAT---GQPKYQKPFEPLVPGFEYFEF-----NNVEDLRRKMSEDVCAVFLEPIQGESGIV 199 (397)
T ss_dssp CCEEEEEBTCCCCSSHHHHHHS---BCHHHHGGGCSCCTTEEEECT-----TCHHHHHHHCCTTEEEEEECSEECTTTCE
T ss_pred CceEEEEcCCcCCCchhhhhcc---CChhhccccCCCCCCeeEecC-----CCHHHHHHHhhcCeEEEEEecccCCCCcc
Confidence 47899888888654 3344433 443 556654 2899999999999999999999999999
Q ss_pred cc---ChHHHHHHhhhcCCEEEEecccc-cCcc--cccCC--CCCccEEEEccccccCC-CceEEEEEecCCCCcccccc
Q psy15216 1548 IQ---PILEIGELCRSKGVIFHCDAAQA-VGKI--DINIQ--NYKVDLMSFSAHKIYGP-KGIGALYIRRNPRTRIEAQI 1618 (2602)
Q Consensus 1548 ~~---~l~~I~~ia~~~gi~vivD~a~~-~g~~--~~~l~--~~~~D~~v~S~~K~~gp-~G~G~l~~~~~~~~~l~~~~ 1618 (2602)
++ ++++|.++|++||+++|+|++|+ ++.. +..+. ...+|++ |++|.+++ .++|+++++++++ .+.+..
T Consensus 200 ~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~G~r~G~~~~~~~~~-~l~~~~ 276 (397)
T 2ord_A 200 PATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLFAYQKYGVVPDVL--TTAKGLGGGVPIGAVIVNERAN-VLEPGD 276 (397)
T ss_dssp ECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE--EECGGGGTTSCCEEEEECSTTC-CCCTTS
T ss_pred cCCHHHHHHHHHHHHHcCCEEEEEecccCCccCccchhhhhhCCCCCee--eeccccCCCcCeEEEEEchHhc-ccCCCC
Confidence 44 48899999999999999999997 2211 11111 1236766 66896652 2389999998876 554311
Q ss_pred ccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---CCcEEEeCCCCCCCCceEEEEEe
Q psy15216 1619 HGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMES---IEEIYINGDMNNRIPHNLNISFN 1695 (2602)
Q Consensus 1619 ~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~---~~gl~i~~~~~~~~~~~~~~~~~ 1695 (2602)
.....+.+...+.++.++|+.... ++..++.+++++++.+.|.+. ++.+....+ ...+..+.++
T Consensus 277 -------~~~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~----~g~~~~~~~~ 343 (397)
T 2ord_A 277 -------HGTTFGGNPLACRAGVTVIKELTK--EGFLEEVEEKGNYLMKKLQEMKEEYDVVADVRG----MGLMIGIQFR 343 (397)
T ss_dssp -------SCCSSTTCHHHHHHHHHHHHHHTS--TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEE----ETTEEEEEEC
T ss_pred -------cCCCCCCCHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHHHHHhCCceEEEEE----EeEEEEEEEC
Confidence 111224566666767677775433 456778888888888888762 233221111 1233444554
Q ss_pred c-CCcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1696 F-IEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1696 ~-~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
. .+..++...| +||.++++. + +++|++++..++.+++++++++|++.
T Consensus 344 ~~~~~~~l~~~l~~~gi~v~~~~----~-------------------~~iRis~~~~~~~e~i~~~~~~l~~~ 393 (397)
T 2ord_A 344 EEVSNREVATKCFENKLLVVPAG----N-------------------NTIRFLPPLTVEYGEIDLAVETLKKV 393 (397)
T ss_dssp TTSCHHHHHHHHHHTTEECEEET----T-------------------TEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHCCCEEccCC----C-------------------CEEEEECCcCCCHHHHHHHHHHHHHH
Confidence 3 2355666665 799988652 1 68999998889999999999999873
|
| >3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.76 E-value=6.9e-18 Score=217.22 Aligned_cols=289 Identities=16% Similarity=0.154 Sum_probs=195.0
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCE--EEEcCCCCcccHHHHHHHHhCCcEEEEecc
Q psy15216 41 KAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKH--IITVQTEHKSVLDSIRKLENDGFRVTYLKP 118 (2602)
Q Consensus 41 ~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~--Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~ 118 (2602)
+..+++++++++++|.+. .++++|+++|+.+++.++. .+||. |+++.+.|++...........|++++.++.
T Consensus 48 ~~~~~l~~~la~~~~~~~--~i~~~~g~~a~~~a~~~~~----~~g~~~vvi~~~~~~~~~~~~~~~~~~~g~~~~~v~~ 121 (359)
T 3pj0_A 48 AVIEDFETKIAKILGKQS--AVFFPSGTMAQQIALRIWA----DRKENRRVAYHPLSHLEIHEQDGLKELQQITPLLLGT 121 (359)
T ss_dssp HHHHHHHHHHHHHHTCSE--EEEESCHHHHHHHHHHHHH----HHHTCCEEEECTTCHHHHSSTTHHHHHHCCEEEECSC
T ss_pred HHHHHHHHHHHHHhCCCc--EEEeCCHHHHHHHHHHHHH----hcCCCcEEEEeccceeeehhcchHHHhcCceEEecCC
Confidence 467899999999999863 3666889999999999887 67776 666655554432211111223999999986
Q ss_pred CCCCccChHHHHhhccCCceEEEEecccCcc-cccccHHHH---HHHHHhcCCEEEEecccccccc------cccCCCCC
Q psy15216 119 KNNGLITLSQLEEKICSDTILVSVMLVNNEI-GVIQPILEI---GELCRSKGVIFHCDAAQAVGKI------DINIQNYK 188 (2602)
Q Consensus 119 ~~~~~ld~e~l~~~i~~~tklv~i~~~~npT-G~~~~l~~I---~~la~~~g~~livD~a~a~g~~------~~dl~~~~ 188 (2602)
+++.+|+++|+++ .+++++|++++|+||+ |.++|.++| .++|++||+++|+|++|..+.. +.++. .+
T Consensus 122 -~~~~~d~~~l~~~-~~~~~~v~~~~p~n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~-~~ 198 (359)
T 3pj0_A 122 -ANQLLTIDDIKSL-REPVSSVLIELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGARLWEITPFYQKSAEEIC-AL 198 (359)
T ss_dssp -TTSCCCHHHHHTC-SSCCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETTCGGGHHHHTCCHHHHH-TT
T ss_pred -cCCCcCHHHHHhc-cCCceEEEEEecccCCCcccCCHHHHHHHHHHHHHcCCEEEEECcchhcchhhhCCCHHHhh-cc
Confidence 5678999999999 8899999999999998 799986665 9999999999999999865432 11121 35
Q ss_pred ccEEEecccccc-CCCCcEEEEEecCCCCcccceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy15216 189 VDLMSFSAHKIY-GPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQK 267 (2602)
Q Consensus 189 ~D~~~~S~~K~~-Gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~ 267 (2602)
.|+++.|+||.+ +|.| |+++.++++++.+.......+ ....+.+....+++ .+++. .. +..++..++++
T Consensus 199 ~d~~~~s~sK~~~~~~g-g~~~~~~~l~~~~~~~~~~~~----~~~~~~~~~~~a~~-~~l~~---~~-~~~~~~~~~~~ 268 (359)
T 3pj0_A 199 FDSVYVSFYKGIGGIAG-AILAGNDDFVQEAKIWKRRYG----GDLISLYPYILSAD-YYFEK---RI-GKMAEYFEAAK 268 (359)
T ss_dssp CSEEEEESSSTTCCSSC-EEEEECHHHHHHHHHHHHHTT----CCCSCCHHHHHHHH-HHHHH---HG-GGHHHHHHHHH
T ss_pred CCEEEEeccccCCCcce-EEEECCHHHHHHHHHHHHHhC----CCcchhHHHHHHHH-HHHHH---HH-HHhHHHHHHHH
Confidence 689999999955 4555 888888877776654221000 00111222222222 33332 22 33445677888
Q ss_pred HHHHHHhhccCceEEeCCCCCCCCceEEEEEccc---ChhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCC
Q psy15216 268 RLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI---EGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELA 342 (2602)
Q Consensus 268 ~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~ 342 (2602)
++.+.|.+ ++++++...+. ..++..+.++.. +...+.+.| +||.+++|..+..+ .
T Consensus 269 ~l~~~L~~-~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~g~~~~~~-----------------~ 328 (359)
T 3pj0_A 269 GLAERFNS-CSGVKTVPEVP--VSNMFHVYFENSADEIGAILTKIQDETGVGISGYLQEKSA-----------------D 328 (359)
T ss_dssp HHHHHHHT-STTEEEESSSC--SSSEEEEEESSCHHHHHHHHHHHHHHHCEECCSCCEEEET-----------------T
T ss_pred HHHHHHhh-CCCceeeccCC--cceEEEEEecCccchhHHHHHHHHHhcCcEecCCccccCC-----------------C
Confidence 99999987 78998853222 134455666532 244555555 79999988654321 1
Q ss_pred CCeEEEecCC---CCCHHHHHHHHHHHHh
Q psy15216 343 HSSIRFTIGR---FTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 343 ~~~iRis~~~---~~t~edid~li~~L~~ 368 (2602)
.+++|++++. ..+.++++.+++.|.+
T Consensus 329 ~~~~r~~i~~~~~~~~~e~l~~~l~~l~~ 357 (359)
T 3pj0_A 329 VCAFEVSVGDAFAEIPAKNLELVFRCLEK 357 (359)
T ss_dssp EEEEEEECCTTGGGSCHHHHHHHHHHHHH
T ss_pred ceEEEEEecCccccCCHHHHHHHHHHHHh
Confidence 2689998863 3578899999888875
|
| >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.3e-17 Score=215.20 Aligned_cols=309 Identities=17% Similarity=0.186 Sum_probs=210.7
Q ss_pred CCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccc---cC
Q psy15216 9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYK---KR 85 (2602)
Q Consensus 9 ~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~---~~ 85 (2602)
.+|.+.+++.+.+........ ....+..+++++++++++| ++++++++|+++|+..++.++..... .+
T Consensus 53 ~~p~v~~a~~~~~~~~~~~~~-------~~~~~~~~~l~~~la~~~~--~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~ 123 (395)
T 3nx3_A 53 NHAKFNAKIKAQVDKLLHTSN-------LYYNENIAAAAKNLAKASA--LERVFFTNSGTESIEGAMKTARKYAFNKGVK 123 (395)
T ss_dssp SCHHHHHHHHHHHTTCSCCCT-------TSBCHHHHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHHHHHHHHHHTTCT
T ss_pred CCHHHHHHHHHHHHhcccccc-------ccCCHHHHHHHHHHHHhcC--CCeEEEeCCHHHHHHHHHHHHHHHhhccCCC
Confidence 589999999998865321111 1123467889999999998 56999999999999999987752100 25
Q ss_pred CCEEEEcCCCCcccHHHHHHHH----------hCCcEEEEeccCCCCccChHHHHhhccCCceEEEEecccCccccccc-
Q psy15216 86 GKHIITVQTEHKSVLDSIRKLE----------NDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP- 154 (2602)
Q Consensus 86 gd~Vlv~~~~~~s~~~~~~~~~----------~~G~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~- 154 (2602)
+++|++.++.|+++......+. ..+..+..++.+ |+++|++++++++++|++.+++|++|.+.|
T Consensus 124 ~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~~~~~~v~~~~~~~~~G~~~~~ 198 (395)
T 3nx3_A 124 GGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKYN-----DISSVEKLVNEKTCAIILESVQGEGGINPAN 198 (395)
T ss_dssp TCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECTT-----CHHHHHTTCCTTEEEEEEESEECTTSCEECC
T ss_pred CCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCCC-----CHHHHHHhccCCeEEEEEeCccCCCCcccCC
Confidence 7999999999988654433220 112345555432 799999999999999999999999999988
Q ss_pred ---HHHHHHHHHhcCCEEEEecccc-ccccc----ccCCCCCccEEEeccccccCC-CCcEEEEEecCC-CCcccceecC
Q psy15216 155 ---ILEIGELCRSKGVIFHCDAAQA-VGKID----INIQNYKVDLMSFSAHKIYGP-KGIGALYIRRNP-RTRIEAQIHG 224 (2602)
Q Consensus 155 ---l~~I~~la~~~g~~livD~a~a-~g~~~----~dl~~~~~D~~~~S~~K~~Gp-~G~G~l~~~~~~-~~~l~~~~~g 224 (2602)
+++|.++|++||+++|+|++|+ +|... .+.....+|++ +++|.+|+ .++|++++++++ ++.+.+...+
T Consensus 199 ~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~~d~~--t~sK~~~~G~~~G~~~~~~~~~~~~~~~~~~~ 276 (395)
T 3nx3_A 199 KDFYKALRKLCDEKDILLIADEIQCGMGRSGKFFAYEHAQILPDIM--TSAKALGCGLSVGAFVINQKVASNSLEAGDHG 276 (395)
T ss_dssp HHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGTTTSCCEEEEECHHHHHHHSCTTCCS
T ss_pred HHHHHHHHHHHHHcCCEEEEEecccCCCcCCcchhHHhcCCCCCEE--EecccccCCCceEEEEEchhhhhhhcCCcccC
Confidence 9999999999999999999987 43221 12222345666 45695543 348999999887 6666543221
Q ss_pred CCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhh---ccCceEEeCCCCCCCCceEEEEEccc
Q psy15216 225 GGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLME---SIEEIYINGDMNNRIPHNLNISFNFI 301 (2602)
Q Consensus 225 ~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~---~~~g~~l~~~~~~~~~~~~~~~~~~~ 301 (2602)
...+.+..+.++..++++.... ++..++.+++.+++++.|.+ ..+.+....+ ...++.+.++..
T Consensus 277 -------~~~~~~~~~~~aa~aal~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~g~~~~~~~~~~ 343 (395)
T 3nx3_A 277 -------STYGGNPLVCAGVNAVFEIFKE--EKILENVNKLTPYLEQSLDELINEFDFCKKRKG----LGFMQGLSLDKS 343 (395)
T ss_dssp -------SCBSCCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEE----ETTEEEEEECTT
T ss_pred -------CCCCCCHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEe----EEEEEEEEeCCc
Confidence 1234566777777778875432 23444455555555555543 1344433321 123445555543
Q ss_pred -ChhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 302 -EGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 302 -~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
+...+...| +||.++++. .+++||+++...|++|+++++++|++.
T Consensus 344 ~~~~~~~~~l~~~Gi~v~~~~-----------------------~~~iRi~~~~~~t~e~i~~~l~~l~~~ 391 (395)
T 3nx3_A 344 VKVAKVIQKCQENALLLISCG-----------------------ENDLRFLPPLILQKEHIDEMSEKLRKA 391 (395)
T ss_dssp SCHHHHHHHHHHTTEECEEET-----------------------TTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHCCCEEecCC-----------------------CCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 456666666 799887652 278999999899999999999999864
|
| >3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.1e-17 Score=213.82 Aligned_cols=299 Identities=13% Similarity=0.074 Sum_probs=197.5
Q ss_pred HHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHH--HHhCCcEEEEec
Q psy15216 1436 EKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRK--LENDGFRVTYLK 1513 (2602)
Q Consensus 1436 ~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~--~~~~G~~v~~v~ 1513 (2602)
.....++++++++++|.+ ++++++|+++|+.. +.++. ++||+|+++++.|++....+.. +...|+++++++
T Consensus 66 ~p~~~~l~~~la~l~g~~--~~~~~~sG~~Ai~~-~~~l~----~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~ 138 (400)
T 3nmy_A 66 NPTRFAYERCVAALEGGT--RAFAFASGMAATST-VMELL----DAGSHVVAMDDLYGGTFRLFERVRRRTAGLDFSFVD 138 (400)
T ss_dssp CHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHH-HHTTS----CTTCEEEEESSCCHHHHHHHHHTHHHHHCCEEEEEC
T ss_pred CHHHHHHHHHHHHHhCCC--CEEEecCHHHHHHH-HHHHc----CCCCEEEEeCCCchHHHHHHHHhhHhhcCeEEEEEC
Confidence 345788999999999965 67778888999987 45554 7999999999999976655433 344599999998
Q ss_pred cCCCCCcChhHHHhhccCCceEEEEeccccccccccChHHHHHHhhhcCCEEEEecccccCcccccCCCCCccEEEEccc
Q psy15216 1514 PKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAH 1593 (2602)
Q Consensus 1514 ~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~ 1593 (2602)
.+ |+++++++++++|++|++++|+||||.+.|+++|.++|++||+++|+|++|+.+.....+ .+++|+++.|+|
T Consensus 139 ~~-----d~~~l~~~i~~~~~~v~~e~~~np~G~~~~l~~i~~la~~~g~~livDe~~~~~~~~~~~-~~g~div~~S~s 212 (400)
T 3nmy_A 139 LT-----DPAAFKAAIRADTKMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVVDNTFASPMLQRPL-SLGADLVVHSAT 212 (400)
T ss_dssp TT-----SHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTHHHHCCGG-GGTCSEEEEETT
T ss_pred CC-----CHHHHHHHhccCCCEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCcccccCChh-hcCCcEEEecCc
Confidence 65 899999999999999999999999999999999999999999999999999865432222 357899999999
Q ss_pred cccCCCc--e-E-EEEEe-cCCCCccccccccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15216 1594 KIYGPKG--I-G-ALYIR-RNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNG 1668 (2602)
Q Consensus 1594 K~~gp~G--~-G-~l~~~-~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~ 1668 (2602)
|++|.+| + | +++++ +++.+.+...... ...+.+....+.+...++ .+....++..+++.++.+.
T Consensus 213 K~l~g~g~~~gG~~vv~~~~~~~~~l~~~~~~-------~g~~~~~~~a~~~l~~l~----~l~~r~~~~~~~a~~l~~~ 281 (400)
T 3nmy_A 213 KYLNGHSDMVGGIAVVGDNAELAEQMAFLQNS-------IGGVQGPFDSFLALRGLK----TLPLRMRAHCENALALAQW 281 (400)
T ss_dssp TTTTCSSSCCCEEEEECSCHHHHHHHHHHHHH-------HCCBCCHHHHHHHHHHHT----THHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCcceeEEEEeCCHHHHHHHHHHHHh-------cCCCCCHHHHHHHHHhHh----HHHHHHHHHHHHHHHHHHH
Confidence 9665332 3 5 34443 3333333322110 111233222222222332 2445666777888888888
Q ss_pred HhhcCCcEEEeCCCC--------------CCCCceEEEEEecC--CcHHHHHhc--CCEEEccccccCC--------CCC
Q psy15216 1669 LMESIEEIYINGDMN--------------NRIPHNLNISFNFI--EGESLLMAI--KDIAVSSGSACTS--------ASL 1722 (2602)
Q Consensus 1669 L~~~~~gl~i~~~~~--------------~~~~~~~~~~~~~~--~~~~~~~~L--~gI~v~~g~~~~~--------~~~ 1722 (2602)
|.+ .|.+.-...+. .....+..|.+++. ....++..+ .++.++.|..++- ...
T Consensus 282 L~~-~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~~~~~~~~~~~~~l~~~~~~~s~G~~~sl~~~p~~~~~~~ 360 (400)
T 3nmy_A 282 LET-HPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLKGGFDAAKRFCEKTELFTLAESLGGVESLVNHPAVMTHAS 360 (400)
T ss_dssp HTT-CTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHHHHHHHHHHHCSSSEECSCCCSSSCEEECTTTTTTTT
T ss_pred HHc-CCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeCCcHHHHHHHHHcCCcceEecCCCCCcceeeCcccccccc
Confidence 877 67765332111 11223344444321 134556665 3455555543321 111
Q ss_pred ChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHH
Q psy15216 1723 EPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK 1763 (2602)
Q Consensus 1723 ~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~ 1763 (2602)
.+......+|+++ +.+|+|++..++++.++.+-++|+
T Consensus 361 ~~~~~~~~~gi~~----~liRlsvGle~~~dli~dl~~al~ 397 (400)
T 3nmy_A 361 IPVARREQLGISD----ALVRLSVGIEDLGDLRGDLERALV 397 (400)
T ss_dssp SCHHHHHHHTCCT----TEEEEECCSSCHHHHHHHHHHHHC
T ss_pred CCHHHHHhcCCCc----CeEEEEeCcCCHHHHHHHHHHHHh
Confidence 2333445567664 899999999877776666666664
|
| >3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=4.6e-17 Score=215.54 Aligned_cols=313 Identities=13% Similarity=0.090 Sum_probs=206.6
Q ss_pred CCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCC-CcEEEeCCHHHHHHHHHHhcccccccCCC
Q psy15216 9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADP-REIIWTSGATESNNLAIKGAAHFYKKRGK 87 (2602)
Q Consensus 9 ~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~-~~Iv~t~g~T~al~~~~~~l~~~~~~~gd 87 (2602)
.++.+.+++.+.+.....+. ......+..++++++++++++... +++++++|+++|+..++.++.. ..+++
T Consensus 60 ~~p~v~~a~~~~~~~~~~~~------~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~ggsea~~~al~~~~~--~~~~~ 131 (439)
T 3dxv_A 60 GHPAIVAAVSAAAANPAGAT------ILSASNAPAVTLAERLLASFPGEGTHKIWFGHSGSDANEAAYRAIVK--ATGRS 131 (439)
T ss_dssp SCHHHHHHHHHHHHSCSCSC------SSSSEEHHHHHHHHHHHHTTTCTTTEEEEEESSHHHHHHHHHHHHHH--HHSCC
T ss_pred CCHHHHHHHHHHHHhccCcc------ccccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCHHHHHHHHHHHHHH--HhCCC
Confidence 78999999999887532111 111223467889999999997655 6999999999999999998531 13567
Q ss_pred EEEEcCCCCcccHHHHHHHHhCCcE--------------EEEeccCCCCcc-----ChHHHHhhc----cCCceEEEEec
Q psy15216 88 HIITVQTEHKSVLDSIRKLENDGFR--------------VTYLKPKNNGLI-----TLSQLEEKI----CSDTILVSVML 144 (2602)
Q Consensus 88 ~Vlv~~~~~~s~~~~~~~~~~~G~~--------------v~~v~~~~~~~l-----d~e~l~~~i----~~~tklv~i~~ 144 (2602)
.|++.++.|++.......+ .+.. +..++.+..+.. |+++|++++ .+++++|+++.
T Consensus 132 ~vi~~~~~yhg~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p 209 (439)
T 3dxv_A 132 GVIAFAGAYHGCTVGSMAF--SGHSVQADAAKADGLILLPYPDPYRPYRNDPTGDAILTLLTEKLAAVPAGSIGAAFIEP 209 (439)
T ss_dssp EEEEETTCCCCSSHHHHCC---------------CEEEECCCCSSSCBTTBTTSHHHHHHHHHHHHTSCTTCEEEEEECS
T ss_pred EEEEECCCCCCCcHHHHhh--cCCCchhhccccCCCCCCcEEcCCCcccccccHHHHHHHHHHHHHhcCCCCEEEEEEcc
Confidence 7777777776654433222 1111 123333222222 689999999 56789999999
Q ss_pred ccCccccccc----HHHHHHHHHhcCCEEEEecccc-ccc----ccccCCCCCccEEEeccccccCCCC--cEEEEEecC
Q psy15216 145 VNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGK----IDINIQNYKVDLMSFSAHKIYGPKG--IGALYIRRN 213 (2602)
Q Consensus 145 ~~npTG~~~~----l~~I~~la~~~g~~livD~a~a-~g~----~~~dl~~~~~D~~~~S~~K~~Gp~G--~G~l~~~~~ 213 (2602)
++|++|.+.| +++|.++|++||+++|+|++|+ ++. ...+.....+|++ |++|.+|+ | +|+++++++
T Consensus 210 ~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~g~~~~~~~~~~~~di~--s~sK~~~~-G~riG~~~~~~~ 286 (439)
T 3dxv_A 210 IQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLHCFEHEGFVPDIL--VLGKGLGG-GLPLSAVIAPAE 286 (439)
T ss_dssp SBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTTSSSSGGGGTTCCCSEE--EECGGGGT-TSCCEEEEEEHH
T ss_pred ccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhcCCCCCEE--EEcchhcC-CcceEEEEECHH
Confidence 9999999999 9999999999999999999996 221 1223333446776 77896653 4 799999998
Q ss_pred CCCcccceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhc---cCceEEeCCCCCCC
Q psy15216 214 PRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMES---IEEIYINGDMNNRI 290 (2602)
Q Consensus 214 ~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~---~~g~~l~~~~~~~~ 290 (2602)
+++.+.+...+ ... .+..+++++.++++.... ++..++.+++.+++++.|.+. .+.+....+.
T Consensus 287 ~~~~~~~~~~~-------~t~-~~~~~~~aa~aal~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---- 352 (439)
T 3dxv_A 287 ILDCASAFAMQ-------TLH-GNPISAAAGLAVLETIDR--DDLPAMAERKGRLLRDGLSELAKRHPLIGDIRGR---- 352 (439)
T ss_dssp HHTSCSSSSCC-------TTT-TCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEE----
T ss_pred HHhhhcCCCcC-------CCc-ccHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEE----
Confidence 87777654211 122 455666666677775433 344555666666666666541 3444333221
Q ss_pred CceEEEEEc--------c-cChhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHH
Q psy15216 291 PHNLNISFN--------F-IEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEI 359 (2602)
Q Consensus 291 ~~~~~~~~~--------~-~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edi 359 (2602)
..++.+.+. . .....+...| +||.++++... .+++||+++...+++|+
T Consensus 353 g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~---------------------~~~iRi~~~~~~t~e~i 411 (439)
T 3dxv_A 353 GLACGMELVCDRQSREPARAETAKLIYRAYQLGLVVYYVGMN---------------------GNVLEFTPPLTITETDI 411 (439)
T ss_dssp TTEEEEEEEEETTTTEECHHHHHHHHHHHHHHTEECEEESTT---------------------SCEEEECCCTTCCHHHH
T ss_pred EEEEEEEEecCccccCCCHHHHHHHHHHHHHCCcEEeecCCC---------------------CCEEEEECCCCCCHHHH
Confidence 123333331 1 1233455555 69988866321 27899999888999999
Q ss_pred HHHHHHHHhh
Q psy15216 360 DFTIKLLKMK 369 (2602)
Q Consensus 360 d~li~~L~~~ 369 (2602)
++++++|++.
T Consensus 412 ~~~l~~l~~~ 421 (439)
T 3dxv_A 412 HKALDLLDRA 421 (439)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999964
|
| >1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=3.1e-17 Score=216.41 Aligned_cols=312 Identities=13% Similarity=0.104 Sum_probs=209.1
Q ss_pred CCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHh-CCCCCcEEEeCCHHHHHHHHHH---hhhhhhcc
Q psy15216 1405 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI-YADPREIIWTSGATESNNLAIK---GAAHFYKK 1480 (2602)
Q Consensus 1405 ~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~-g~~~~~iv~t~gaT~al~~al~---~l~~~~~~ 1480 (2602)
.++.+.+++.+.++... +... .+.......++++++++++ +..+++|++|+|+++|+..++. ++. +
T Consensus 58 ~~~~v~~a~~~~~~~~~-~~~~-----~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~a~~~~----~ 127 (426)
T 1sff_A 58 LHPKVVAAVEAQLKKLS-HTCF-----QVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAAT----K 127 (426)
T ss_dssp TCHHHHHHHHHHTTTCS-CCCT-----TTEECHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHH----T
T ss_pred CCHHHHHHHHHHHHhCC-Cccc-----cccCCHHHHHHHHHHHHhCCcccccEEEEeCchHHHHHHHHHHHHHhh----C
Confidence 57789999998886521 2111 1112245678999999999 5223789999999999999988 444 5
Q ss_pred CCCEEEEcCCCCcchHH-HHHHHHhC-----Cc-----EEEEeccCC-----CCCcChhHHHhhcc-----CCceEEEEe
Q psy15216 1481 RGKHIITVQTEHKSVLD-SIRKLEND-----GF-----RVTYLKPKN-----NGLITLSQLEEKIC-----SDTILVSVM 1539 (2602)
Q Consensus 1481 ~gd~Vlv~~~~~~s~~~-~~~~~~~~-----G~-----~v~~v~~~~-----~~~id~d~l~~~i~-----~~t~lv~l~ 1539 (2602)
+| +|++.++.|+++.. ........ +. .++.++.+. ++.+|+++|+++++ +++++|+++
T Consensus 128 ~~-~vi~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~ 206 (426)
T 1sff_A 128 RS-GTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIE 206 (426)
T ss_dssp CC-EEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGEEEEEEC
T ss_pred CC-eEEEECCCcCCCchHhhhhcCCccccccccCCCCCCcEEeCCCccccccchHHHHHHHHHHHHhccCCCceEEEEEe
Confidence 66 89999999887543 33332110 11 266676653 23478999999986 467788775
Q ss_pred c-cccccccccC----hHHHHHHhhhcCCEEEEecccc-cCcc----cccCCCCCccEEEEccccccCCCc--eEEEEEe
Q psy15216 1540 L-VNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKI----DINIQNYKVDLMSFSAHKIYGPKG--IGALYIR 1607 (2602)
Q Consensus 1540 ~-~~n~tG~~~~----l~~I~~ia~~~gi~vivD~a~~-~g~~----~~~l~~~~~D~~v~S~~K~~gp~G--~G~l~~~ 1607 (2602)
+ ++| ||...+ +++|.++|++||+++|+|++|+ ++.. .++.....+|++ |++|.+|+ | +|+++++
T Consensus 207 p~~~n-tG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~di~--s~sK~~~~-GlriG~~~~~ 282 (426)
T 1sff_A 207 PVQGE-GGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAPDLT--TFAKSIAG-GFPLAGVTGR 282 (426)
T ss_dssp SBCTT-TTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTSCCSEE--EECGGGGT-SSCCEEEEEE
T ss_pred cccCC-CCcccCCHHHHHHHHHHHHHcCCEEEEechhhccCcccchhhhhhcCCCCCEE--EEcccccC-CCceEEEEEc
Confidence 4 455 997777 9999999999999999999998 3211 122223346765 77898877 7 6999999
Q ss_pred cCCCCccccccccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---CCcEEEeCCCCC
Q psy15216 1608 RNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMES---IEEIYINGDMNN 1684 (2602)
Q Consensus 1608 ~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~---~~gl~i~~~~~~ 1684 (2602)
+++++.+.+... ....+.+...+.++.++|+.... ....++..+++++++++|.+. ++.+....+ .
T Consensus 283 ~~~~~~l~~~~~-------~~~~~~~~~~~~a~~aal~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~- 351 (426)
T 1sff_A 283 AEVMDAVAPGGL-------GGTYAGNPIACVAALEVLKVFEQ--ENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRG-L- 351 (426)
T ss_dssp HHHHTTSCTTSB-------CCSSSSCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEE-E-
T ss_pred HHHHhhhccCCc-------CcCCCCCHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEE-E-
Confidence 877666653211 11234566777777788886543 245667777788888777652 333332211 1
Q ss_pred CCCceEEEEEec---------CCcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHH
Q psy15216 1685 RIPHNLNISFNF---------IEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEK 1753 (2602)
Q Consensus 1685 ~~~~~~~~~~~~---------~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~e 1753 (2602)
..+..+.+.. .+..++...| +||.+++|..+ .+++||+++..++.+
T Consensus 352 --g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~---------------------~~~iRi~~~~~~~~~ 408 (426)
T 1sff_A 352 --GAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPY---------------------YNVLRILVPLTIEDA 408 (426)
T ss_dssp --TTEEEEEEBGGGCTTSBCHHHHHHHHHHHHHTTEECEEESTT---------------------SCEEEECCCTTCCHH
T ss_pred --EEEEEEEEecCccccCCChHHHHHHHHHHHHCCcEEecCCCC---------------------CCEEEEECCccCCHH
Confidence 2334445531 1234555555 79999877642 278999999899999
Q ss_pred HHHHHHHHHHHh
Q psy15216 1754 EIDFTIKLLKMK 1765 (2602)
Q Consensus 1754 did~li~~L~~~ 1765 (2602)
++++++++|++.
T Consensus 409 ~i~~~~~~l~~~ 420 (426)
T 1sff_A 409 QIRQGLEIISQC 420 (426)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999873
|
| >3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.3e-18 Score=220.22 Aligned_cols=289 Identities=16% Similarity=0.154 Sum_probs=193.5
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCE--EEEcCCCCcchHHHHHHHHhCCcEEEEecc
Q psy15216 1437 KAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKH--IITVQTEHKSVLDSIRKLENDGFRVTYLKP 1514 (2602)
Q Consensus 1437 ~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~--Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~ 1514 (2602)
....++++++++++|.+. .++++|+++|+..++.++. ++||+ |+++.+.|++...........|++++.++.
T Consensus 48 ~~~~~l~~~la~~~~~~~--~i~~~~g~~a~~~a~~~~~----~~g~~~vvi~~~~~~~~~~~~~~~~~~~g~~~~~v~~ 121 (359)
T 3pj0_A 48 AVIEDFETKIAKILGKQS--AVFFPSGTMAQQIALRIWA----DRKENRRVAYHPLSHLEIHEQDGLKELQQITPLLLGT 121 (359)
T ss_dssp HHHHHHHHHHHHHHTCSE--EEEESCHHHHHHHHHHHHH----HHHTCCEEEECTTCHHHHSSTTHHHHHHCCEEEECSC
T ss_pred HHHHHHHHHHHHHhCCCc--EEEeCCHHHHHHHHHHHHH----hcCCCcEEEEeccceeeehhcchHHHhcCceEEecCC
Confidence 357889999999999753 4666899999999999887 57776 666655555432211111223899999987
Q ss_pred CCCCCcChhHHHhhccCCceEEEEecccccc-ccccChHHH---HHHhhhcCCEEEEecccccCcc------cccCCCCC
Q psy15216 1515 KNNGLITLSQLEEKICSDTILVSVMLVNNEI-GVIQPILEI---GELCRSKGVIFHCDAAQAVGKI------DINIQNYK 1584 (2602)
Q Consensus 1515 ~~~~~id~d~l~~~i~~~t~lv~l~~~~n~t-G~~~~l~~I---~~ia~~~gi~vivD~a~~~g~~------~~~l~~~~ 1584 (2602)
.++.+|+++|+++ ++++++|++++|+||+ |.++|.++| .++|++||+++|+|++|..+.. +.++. .+
T Consensus 122 -~~~~~d~~~l~~~-~~~~~~v~~~~p~n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~-~~ 198 (359)
T 3pj0_A 122 -ANQLLTIDDIKSL-REPVSSVLIELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGARLWEITPFYQKSAEEIC-AL 198 (359)
T ss_dssp -TTSCCCHHHHHTC-SSCCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETTCGGGHHHHTCCHHHHH-TT
T ss_pred -cCCCcCHHHHHhc-cCCceEEEEEecccCCCcccCCHHHHHHHHHHHHHcCCEEEEECcchhcchhhhCCCHHHhh-cc
Confidence 4678999999999 8899999999999998 799886555 9999999999999999865432 11121 35
Q ss_pred ccEEEEcccc-ccCCCceEEEEEecCCCCccccccccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15216 1585 VDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQK 1663 (2602)
Q Consensus 1585 ~D~~v~S~~K-~~gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~ 1663 (2602)
.|++++|+|| +.+|.| |+++.++++++.+.......+ ......+.....++ .+++. .. +..+++.++++
T Consensus 199 ~d~~~~s~sK~~~~~~g-g~~~~~~~l~~~~~~~~~~~~----~~~~~~~~~~~a~~-~~l~~---~~-~~~~~~~~~~~ 268 (359)
T 3pj0_A 199 FDSVYVSFYKGIGGIAG-AILAGNDDFVQEAKIWKRRYG----GDLISLYPYILSAD-YYFEK---RI-GKMAEYFEAAK 268 (359)
T ss_dssp CSEEEEESSSTTCCSSC-EEEEECHHHHHHHHHHHHHTT----CCCSCCHHHHHHHH-HHHHH---HG-GGHHHHHHHHH
T ss_pred CCEEEEeccccCCCcce-EEEECCHHHHHHHHHHHHHhC----CCcchhHHHHHHHH-HHHHH---HH-HHhHHHHHHHH
Confidence 6899999999 455655 888888877666643211000 00011122222222 33332 12 34445677888
Q ss_pred HHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecC---CcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCcccc
Q psy15216 1664 RLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI---EGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELA 1738 (2602)
Q Consensus 1664 ~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~ 1738 (2602)
++.+.|.+ ++++.+...+.. ..+..+.++.. +...+...| +||.+++|..+..+ .
T Consensus 269 ~l~~~L~~-~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~g~~~~~~-----------------~ 328 (359)
T 3pj0_A 269 GLAERFNS-CSGVKTVPEVPV--SNMFHVYFENSADEIGAILTKIQDETGVGISGYLQEKSA-----------------D 328 (359)
T ss_dssp HHHHHHHT-STTEEEESSSCS--SSEEEEEESSCHHHHHHHHHHHHHHHCEECCSCCEEEET-----------------T
T ss_pred HHHHHHhh-CCCceeeccCCc--ceEEEEEecCccchhHHHHHHHHHhcCcEecCCccccCC-----------------C
Confidence 99999987 789988522221 23444555432 234555555 79999988765422 1
Q ss_pred CCeEEEecCC---CCCHHHHHHHHHHHHH
Q psy15216 1739 HSSIRFTIGR---FTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1739 ~~~iRls~~~---~~t~edid~li~~L~~ 1764 (2602)
.+++|++++. ..+.++++.+++.|.+
T Consensus 329 ~~~~r~~i~~~~~~~~~e~l~~~l~~l~~ 357 (359)
T 3pj0_A 329 VCAFEVSVGDAFAEIPAKNLELVFRCLEK 357 (359)
T ss_dssp EEEEEEECCTTGGGSCHHHHHHHHHHHHH
T ss_pred ceEEEEEecCccccCCHHHHHHHHHHHHh
Confidence 2689998864 3578999999988875
|
| >3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-17 Score=214.74 Aligned_cols=286 Identities=15% Similarity=0.137 Sum_probs=194.4
Q ss_pred HHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCC--EEEEcCCCCcchHHHHHHHHhCCcEEEEeccC
Q psy15216 1438 AIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK--HIITVQTEHKSVLDSIRKLENDGFRVTYLKPK 1515 (2602)
Q Consensus 1438 ~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd--~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~ 1515 (2602)
...++++++++++|.+ ..++++|+|+|+..++.++. ++|| +|+++.+.|++...........|++++.++.
T Consensus 48 ~~~~l~~~la~~~~~~--~~i~~~~G~~a~~~al~~~~----~~gd~~~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~- 120 (357)
T 3lws_A 48 IIEPFEQKFADVLGMD--DAVFFPSGTMAQQVALRIWS----DETDNRTVAYHPLCHLEIHEQDGLKELHPIETILVGA- 120 (357)
T ss_dssp THHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHHH----HHHTCCEEEECTTCHHHHSSTTHHHHHSSCEEEECSC-
T ss_pred HHHHHHHHHHHHhCCC--cEEEecCcHHHHHHHHHHHh----hcCCCcEEEecccceeeeeccchhhhccCcEEEEecC-
Confidence 4678999999999974 45666888999999998887 6777 7888877776654322223344899998884
Q ss_pred CCCCcChhHHHhhccCCceEEEEecccccc-ccccC---hHHHHHHhhhcCCEEEEecccccC------cccccCCCCCc
Q psy15216 1516 NNGLITLSQLEEKICSDTILVSVMLVNNEI-GVIQP---ILEIGELCRSKGVIFHCDAAQAVG------KIDINIQNYKV 1585 (2602)
Q Consensus 1516 ~~~~id~d~l~~~i~~~t~lv~l~~~~n~t-G~~~~---l~~I~~ia~~~gi~vivD~a~~~g------~~~~~l~~~~~ 1585 (2602)
+++.+|+++|+++. ++++|++++|+||| |.++| +++|.++|++||+++|+|++|..+ ....++. ...
T Consensus 121 ~~~~~d~~~l~~~~--~~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~-~~~ 197 (357)
T 3lws_A 121 ADRLMTLDEIKALP--DIACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKTAAEIA-GLF 197 (357)
T ss_dssp TTSCCCHHHHHTCC--SCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCHHHHH-TTS
T ss_pred CCCCcCHHHHhcCc--CcceEEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCChHHHH-hcC
Confidence 45679999999984 49999999999998 99887 889999999999999999998621 1111111 246
Q ss_pred cEEEEcccccc-CCCceEEEEEecCCCCccccccccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15216 1586 DLMSFSAHKIY-GPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKR 1664 (2602)
Q Consensus 1586 D~~v~S~~K~~-gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~ 1664 (2602)
|++++|+||.+ ||.| |+++.++++++.+.......+ ....+.+.....++ .+++. . .+..+++.+++++
T Consensus 198 d~~~~s~sK~~~~~~g-g~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-~~l~~---~-~~~~~~~~~~~~~ 267 (357)
T 3lws_A 198 DSIYISFYKGLGGIAG-AILAGPAAFCQTARIWKRRYG----GDLISLYPYIVSAD-YYYEL---R-KDRMGQYYEQAKQ 267 (357)
T ss_dssp SEEEEESSSTTCCSSC-EEEEECHHHHHHHHHHHHHTT----CCCSCCHHHHHHHH-HHHHH---H-TTCHHHHHHHHHH
T ss_pred CEEEEeccccCCCCce-EEEEcCHHHHHHHHHHHHHhc----CCcccchHHHHHHH-HHHHH---H-HHHHHHHHHHHHH
Confidence 88899999966 7887 999998876666543221000 00011222222222 33332 2 2233445777888
Q ss_pred HHHHHhhcCCcEEEeCCCCCCCCceEEEEEecC---CcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccC
Q psy15216 1665 LYNGLMESIEEIYINGDMNNRIPHNLNISFNFI---EGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAH 1739 (2602)
Q Consensus 1665 l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 1739 (2602)
+.+.|.+ ++++.+...+.. ..+..+.++.. +...+...| +||.+++|..+.++ .
T Consensus 268 l~~~L~~-~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~g~~~~~~------------------~ 326 (357)
T 3lws_A 268 LAEQFNA-LPGVHTTPEVPV--SNMFHLHFDGQAADISPKLEQVQEETGLGFVGYLVDKDG------------------Y 326 (357)
T ss_dssp HHHHHHT-STTEEEESSSCS--SSEEEEEEESCHHHHHHHHHHHHHHHCEESCSCCEECSS------------------E
T ss_pred HHHHHHh-CCCCeeccCCCc--ceEEEEEecCChHHHHHHHHHHHHhcCeEEecccccCCC------------------c
Confidence 9999987 789988422222 23444555532 134555555 79999988654321 2
Q ss_pred CeEEEecCCC---CCHHHHHHHHHHHHH
Q psy15216 1740 SSIRFTIGRF---TTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1740 ~~iRls~~~~---~t~edid~li~~L~~ 1764 (2602)
+++|++++.. .+.++++.+++.|.+
T Consensus 327 ~~~r~~i~~~~~~~~~~~l~~al~~l~~ 354 (357)
T 3lws_A 327 CSTEISVGDAYGELDQQTRDAGFARLRQ 354 (357)
T ss_dssp EEEEEEBCTTGGGSCHHHHHHHHHHHHH
T ss_pred eEEEEEecchhhhcCHHHHHHHHHHHHH
Confidence 5899998753 588899999988876
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=3.3e-18 Score=224.20 Aligned_cols=276 Identities=11% Similarity=0.055 Sum_probs=196.2
Q ss_pred HHHHHHHHHHHhC------CCCCcEEEeCCHHHHHHHHHHhh--------hhhhccCCCEEEEcCCCCcchHHHHHHHHh
Q psy15216 1439 IEKARNEVAQLIY------ADPREIIWTSGATESNNLAIKGA--------AHFYKKRGKHIITVQTEHKSVLDSIRKLEN 1504 (2602)
Q Consensus 1439 ~~~lr~~ia~~~g------~~~~~iv~t~gaT~al~~al~~l--------~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~ 1504 (2602)
..++|++++++++ +++++|++|+|+++++++++.++ . ++||+|+++.|.|+++...++..
T Consensus 102 ~~~lr~aia~~~~~~~~~~~~~~~iv~t~G~~~al~~~~~~l~~~~~~~~~----~~Gd~Vlv~~P~y~~~~~~~~~~-- 175 (427)
T 2hox_A 102 SFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPD----APESKVVAHAPFYPVFREQTKYF-- 175 (427)
T ss_dssp CHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTT----SCCEEEEECSSCCHHHHHHHHHS--
T ss_pred hHHHHHHHHHHHHHhCCcCCCCCEEEEeCCHHHHHHHHHHHHhhccccccC----CCCCEEEEeCCCcccHHHHHHHc--
Confidence 4678888888885 57889999999999999999998 6 79999999999999988776655
Q ss_pred CCcEEEEeccCCCCCcChhHHHhhccCCceEEEEeccccccccccChHHHHHHhhhcCCEEEEecccccCccc-ccCCCC
Q psy15216 1505 DGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKID-INIQNY 1583 (2602)
Q Consensus 1505 ~G~~v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~~ia~~~gi~vivD~a~~~g~~~-~~l~~~ 1583 (2602)
|++++. +.+|+++|++++++++++|++++|+||||.+++ + +++ ++..+.|+++..+..+ .++. .
T Consensus 176 -g~~~~~------~~~d~~~l~~~~~~~~k~v~l~~p~NPtG~~~~-~----~l~--~~~~i~d~~~~~~~~s~~~~~-~ 240 (427)
T 2hox_A 176 -DKKGYV------WAGNAANYVNVSNPEQYIEMVTSPNNPEGLLRH-A----VIK--GCKSIYDMVYYWPHYTPIKYK-A 240 (427)
T ss_dssp -CBTTEE------EEEEGGGGTTCSCGGGEEEEEESSCTTTCCCCC-C----SST--TCEEEEECTTCSTTTSCCCSC-B
T ss_pred -CCeeee------ecCCHHHHHHhhcCCceEEEEcCCCCCcccccH-H----HHc--CCCEEEeecccCCCCCccccC-C
Confidence 766553 336889999999989999999999999999999 4 333 5678889876532211 1222 4
Q ss_pred CccEEEEccccccCCCc--eEEEEEe-cCCCCccccccccCCccccCCCCCcchhHHHHHHHHHHHHH-----------H
Q psy15216 1584 KVDLMSFSAHKIYGPKG--IGALYIR-RNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLAR-----------I 1649 (2602)
Q Consensus 1584 ~~D~~v~S~~K~~gp~G--~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~-----------~ 1649 (2602)
+.+++++|+||.+|++| +||++++ +++++.+...... .. .+.+...+.++..+|+... .
T Consensus 241 ~~~i~~~S~SK~~g~~G~RiG~~~~~~~~l~~~l~~~~~~------~~-~~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~ 313 (427)
T 2hox_A 241 DEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTK------NT-EGTPRETQLRSLKVLKEVVAMVKTQKGTMRD 313 (427)
T ss_dssp CCSEEEEEHHHHTSCGGGCCEEEEECCHHHHHHHHHHHHH------HT-SSCCHHHHHHHHHHHHHHHHHHHHHTTSTTS
T ss_pred CceEEEEeChhcCCCCCceEEEEEECCHHHHHHHHHHHHh------cC-CCCCHHHHHHHHHHhhcchhhhccccchhHH
Confidence 57899999999999888 8999995 6666666543211 11 2344444444546665321 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCcEEE--eC-CCC--------CCCCceEEEEEecCCcHHHHHhc---CCEEEcccc
Q psy15216 1650 EMKEELKRILFLQKRLYNGLMESIEEIYI--NG-DMN--------NRIPHNLNISFNFIEGESLLMAI---KDIAVSSGS 1715 (2602)
Q Consensus 1650 ~~~~~~~~~~~l~~~l~~~L~~~~~gl~i--~~-~~~--------~~~~~~~~~~~~~~~~~~~~~~L---~gI~v~~g~ 1715 (2602)
.++..+++++++++++.+.|.+ .+++.+ .. +.. ........+.++. +..++...| +||.+++|.
T Consensus 314 ~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~-~~~~~~~~ll~~~gI~v~pg~ 391 (427)
T 2hox_A 314 LNTFGFKKLRERWVNITALLDQ-SDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEW-EEDKDCYQTFQNGRINTQNGV 391 (427)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-SSSEECCCCCSCEEETTTTEEECCCCSEEEEEECS-GGGCSHHHHHHHTTEECEEGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-CcCccccccccccccccccccCCCCceEEEEECCC-cHHHHHHHHHHHCCEEEcCCC
Confidence 3456778888999999999987 678775 21 110 0012222233332 233343332 799999998
Q ss_pred ccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1716 ACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1716 ~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
.|... .+++|||++ ++.++++.++++|++
T Consensus 392 ~f~~~------------------~~~~Ris~~--~~~e~l~~~l~~l~~ 420 (427)
T 2hox_A 392 GFEAS------------------SRYVRLSLI--KTQDDFDQLMYYLKD 420 (427)
T ss_dssp GGTSC------------------TTEEEEECS--SCHHHHHHHHHHHHH
T ss_pred ccCCC------------------CCEEEEEec--CCHHHHHHHHHHHHH
Confidence 77431 289999998 488999999999986
|
| >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-16 Score=210.85 Aligned_cols=308 Identities=15% Similarity=0.134 Sum_probs=205.1
Q ss_pred CCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhccccc-----c
Q psy15216 9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFY-----K 83 (2602)
Q Consensus 9 ~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~-----~ 83 (2602)
.+|.+.+++.+.+.... .... .+ ..+...++++++++++| .+++++++|+++|+..++.++.... +
T Consensus 82 ~~p~v~~ai~~~~~~~~-~~~~-~~-----~~~~~~~l~~~la~~~g--~~~v~~~~sGseA~~~al~~a~~~~~~~~g~ 152 (433)
T 1z7d_A 82 CHPNILNAMINQAKNLT-ICSR-AF-----FSVPLGICERYLTNLLG--YDKVLMMNTGAEANETAYKLCRKWGYEVKKI 152 (433)
T ss_dssp TCHHHHHHHHHHHTTCS-CCCT-TS-----EEHHHHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHHHHHHHHHHTSCC
T ss_pred CCHHHHHHHHHHHHhCC-CccC-Cc-----CCHHHHHHHHHHHhhcC--CCeEEEeCCHHHHHHHHHHHHHHHhhhccCC
Confidence 78999999999886532 2111 11 22456788999999998 4689999999999999998764110 1
Q ss_pred cCC-CEEEEcCCCCcccHHH-HHHHHh----CC-----cEEEEeccCCCCccChHHHHhhc-cCCceEEEEecccCcccc
Q psy15216 84 KRG-KHIITVQTEHKSVLDS-IRKLEN----DG-----FRVTYLKPKNNGLITLSQLEEKI-CSDTILVSVMLVNNEIGV 151 (2602)
Q Consensus 84 ~~g-d~Vlv~~~~~~s~~~~-~~~~~~----~G-----~~v~~v~~~~~~~ld~e~l~~~i-~~~tklv~i~~~~npTG~ 151 (2602)
.+| ++|++.++.|++.... +..... .+ ..+..++. .|+++|++++ ++++++|+++.+++++|.
T Consensus 153 ~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~-----~d~~~le~~l~~~~~~~vi~ep~~~~~G~ 227 (433)
T 1z7d_A 153 PENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPY-----DDLEALEEELKDPNVCAFIVEPIQGEAGV 227 (433)
T ss_dssp CTTCCEEEEETTC--------------------------CEEEECT-----TCHHHHHHHHTSTTEEEEEECSSBSTTTS
T ss_pred CCCCCeEEEEeCCcCCcchhhhcccCCccccccCCCCCCCeEEeCC-----CCHHHHHHHhCCCCEEEEEEECCCCCCCc
Confidence 367 9999999998875433 222210 01 23444443 3899999999 578899888888888998
Q ss_pred cc----cHHHHHHHHHhcCCEEEEecccc-ccccc----ccCCCCCccEEEeccccccCCCC---cEEEEEecCCCCccc
Q psy15216 152 IQ----PILEIGELCRSKGVIFHCDAAQA-VGKID----INIQNYKVDLMSFSAHKIYGPKG---IGALYIRRNPRTRIE 219 (2602)
Q Consensus 152 ~~----~l~~I~~la~~~g~~livD~a~a-~g~~~----~dl~~~~~D~~~~S~~K~~Gp~G---~G~l~~~~~~~~~l~ 219 (2602)
+. ++++|.++|++||+++|+|++|. ++... .+.....+|++ |++|.+| .| +|++++++++++.+.
T Consensus 228 ~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~g~~~~~~~~~~~~di~--t~sK~l~-~G~~~~G~v~~~~~~~~~l~ 304 (433)
T 1z7d_A 228 IVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYNVKPDVI--LLGKALS-GGHYPISAVLANDDIMLVIK 304 (433)
T ss_dssp BCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGG-TTSSCCEEEEECHHHHTTCC
T ss_pred cCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcCCcchhhHhcCCCCCEE--EECcccc-CCCCCeEEEEECHHHHhhhc
Confidence 76 69999999999999999999996 32211 12223357876 6779766 34 899999988777765
Q ss_pred ceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhc---cCceEEeCCCCCCCCceEEE
Q psy15216 220 AQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMES---IEEIYINGDMNNRIPHNLNI 296 (2602)
Q Consensus 220 ~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~---~~g~~l~~~~~~~~~~~~~~ 296 (2602)
+...+ ...+.+..+.+++.++|+.... ++..++..++.+++.++|.+. ++.+....+ ...++.+
T Consensus 305 ~~~~~-------~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~----~g~~~~i 371 (433)
T 1z7d_A 305 PGEHG-------STYGGNPLAASICVEALNVLIN--EKLCENAEKLGGPFLENLKRELKDSKIVRDVRG----KGLLCAI 371 (433)
T ss_dssp TTCCC-------CTTTTCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEE----ETTEEEE
T ss_pred ccccc-------ccCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEe----eeeEEEE
Confidence 42211 1224566667777778875543 256677788888888888652 233222211 1234455
Q ss_pred EEccc--ChhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 297 SFNFI--EGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 297 ~~~~~--~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
.++.. +..++...| +||.++++. .+++|++++..++++|+++++++|++.
T Consensus 372 ~~~~~~~~~~~~~~~l~~~Gv~v~~~~-----------------------~~~iRi~~~~~~t~e~i~~~l~~l~~~ 425 (433)
T 1z7d_A 372 EFKNELVNVLDICLKLKENGLITRDVH-----------------------DKTIRLTPPLCITKEQLDECTEIIVKT 425 (433)
T ss_dssp EECTTTCCHHHHHHHHHHTTEECCEET-----------------------TTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred EEccChhHHHHHHHHHHHCCeEEecCC-----------------------CCEEEEECCcCCCHHHHHHHHHHHHHH
Confidence 55532 355666666 799887541 278999998889999999999999864
|
| >3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.9e-17 Score=213.48 Aligned_cols=255 Identities=12% Similarity=0.089 Sum_probs=183.3
Q ss_pred HHHHHHHHHHHhh-ccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEE--eCCHHHHHHHHHHhhhhhhccCCC
Q psy15216 1407 PRVVDKMIPYLRV-QFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIW--TSGATESNNLAIKGAAHFYKKRGK 1483 (2602)
Q Consensus 1407 ~~v~eal~~~l~~-~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~--t~gaT~al~~al~~l~~~~~~~gd 1483 (2602)
.++++++.+.... ...++.. .|.++.. ...++++.+++++|++. .+++ ++|+++|+..++.++. ++||
T Consensus 32 ~~vl~a~~~~~~~~~~~~~~~-~~~y~~~---~~~~Le~~lA~l~g~e~-alv~p~~~sGt~Ai~~al~all----~~GD 102 (409)
T 3jzl_A 32 AKVLDAFQENKVSDFHFHPST-GYGYDDE---GRDTLERVYATVFKTEA-ALVRPQIISGTHAISTVLFGIL----RPDD 102 (409)
T ss_dssp HHHHHHHHHTTCCGGGGCCCC-TTCTTCH---HHHHHHHHHHHHHTCSE-EEEETTSCSHHHHHHHHHHHHC----CTTC
T ss_pred HHHHHHHHHhhhhhhccCCCc-CCCCChh---HHHHHHHHHHHHhCCCc-EEEECCCccHHHHHHHHHHHhc----CCCC
Confidence 3567777775422 1223322 3444332 36788999999999753 3443 8899999999999887 8999
Q ss_pred EEEEcC-CCCcchHHHH-------HHHHhCCcEEEEeccCCCCCcChhHHHhhccCCceEEEEec----cccccccccCh
Q psy15216 1484 HIITVQ-TEHKSVLDSI-------RKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVML----VNNEIGVIQPI 1551 (2602)
Q Consensus 1484 ~Vlv~~-~~~~s~~~~~-------~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~----~~n~tG~~~~l 1551 (2602)
+|++++ +.|+.+...+ ..++..|++++.++.++++.+|+++++++++++|++|++++ |+||||.+.|+
T Consensus 103 ~Vl~~~~~~y~~~~~~~~~~g~~~~~l~~~G~~~~~v~~~~~g~~d~e~l~~ai~~~tklV~i~~s~g~p~nptg~v~~l 182 (409)
T 3jzl_A 103 ELLYITGQPYDTLEEIVGIRKQGQGSLKDFHIGYSSVPLLENGDVDFPRIAKKMTPKTKMIGIQRSRGYADRPSFTIEKI 182 (409)
T ss_dssp EEEECSSSCCTTHHHHHTSSSSSSSCTGGGTCEEEECCCCTTSCCCHHHHHHHCCTTEEEEEEECSCTTSSSCCCCHHHH
T ss_pred EEEEeCCCCcHhHHHHHhcccchhhHHHHcCCEEEEeCCCCCCCcCHHHHHHhccCCCeEEEEECCCCCCCCCcCccccH
Confidence 999998 9999887655 33455699999999988899999999999999999999999 99999999999
Q ss_pred HHHHHHhhh--cCCEEEEecccccCcccccCCCCCccEEEEccccccCCCc---eEEEEEecCCCCccccccccCCcccc
Q psy15216 1552 LEIGELCRS--KGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKG---IGALYIRRNPRTRIEAQIHGGGHEYG 1626 (2602)
Q Consensus 1552 ~~I~~ia~~--~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K~~gp~G---~G~l~~~~~~~~~l~~~~~g~~~~~~ 1626 (2602)
++|.++|++ ||+++++|++|+.+........+++|++++|+||.+|+.| .|+++.++++++.+.......+. +
T Consensus 183 ~~I~~la~~~~~~~~livD~a~~~~~~~~~p~~~g~Div~~S~sK~lgg~~~~~GG~v~~~~~li~~l~~~~~~~~~--g 260 (409)
T 3jzl_A 183 KEMIVFVKNINPEVIVFVDNCYGEFVEYQEPPEVGADIIAGSLIKNPGGGLAKTGGYIAGKEALVDLCGYRLTTPGI--G 260 (409)
T ss_dssp HHHHHHHHHHCTTCEEEEECTTCTTTSSCCSGGGTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHHHHHSCTTT--G
T ss_pred HHHHHHHHhhCCCCEEEEeCCcccccccCCccccCCeEEEECccccCCccCCceEEEEEeCHHHHHHHHHHhccccc--c
Confidence 999999999 9999999999987763333345678999999999665433 49999998877766542211000 0
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEe
Q psy15216 1627 LRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYIN 1679 (2602)
Q Consensus 1627 ~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~ 1679 (2602)
...+. ......++..++.. ...++++..+.+.++.+.|.+ . ++.+.
T Consensus 261 ~~~g~-~~~~~~~~l~gl~~----~~~r~~~~~~~a~~la~~L~~-~-g~~v~ 306 (409)
T 3jzl_A 261 REAGA-SLYSLLEMYQGFFL----APHVTAQAIKGARFTAAMLAE-F-GVEAD 306 (409)
T ss_dssp GGCCC-CTTCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH-T-TCEEE
T ss_pred ccccc-cHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHHh-C-CCccc
Confidence 11111 11112222233332 345667778888899999987 3 45554
|
| >3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.9e-17 Score=213.81 Aligned_cols=255 Identities=15% Similarity=0.068 Sum_probs=182.0
Q ss_pred HHHHHHHHHHHh-hccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEE--eCCHHHHHHHHHHhhhhhhccCCC
Q psy15216 1407 PRVVDKMIPYLR-VQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIW--TSGATESNNLAIKGAAHFYKKRGK 1483 (2602)
Q Consensus 1407 ~~v~eal~~~l~-~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~--t~gaT~al~~al~~l~~~~~~~gd 1483 (2602)
.++++++.+... ....++.. .|.++.. ...++++.+++++|++.. +++ ++|+++|+..++.++. +|||
T Consensus 46 ~~Vl~A~~~~~~~~~~~~~~~-gy~y~~~---~~~~Le~~lA~l~g~e~a-lv~p~~~sGt~Ai~~al~all----~pGD 116 (427)
T 3i16_A 46 LKVLNAFQEERISEAHFTNSS-GYGYGDI---GRDSLDAVYARVFNTESA-LVRPHFVNGTHALGAALFGNL----RPGN 116 (427)
T ss_dssp HHHHHHHHHTTCCGGGSCCCC-TTCTTCH---HHHHHHHHHHHHHTCSEE-EEETTCCSHHHHHHHHHHHHC----CTTC
T ss_pred HHHHHHHHHhchhHHhcCCCC-CCCCCHH---HHHHHHHHHHHHhCCcce-EEeCCCccHHHHHHHHHHHHh----CCCC
Confidence 367777766531 12222322 3433332 277889999999998643 444 8999999999999987 8999
Q ss_pred EEEEcC-CCCcchHHHH--------HHHHhCCcEEEEeccCCCCCcChhHHHhhcc--CCceEEEEec----cccccccc
Q psy15216 1484 HIITVQ-TEHKSVLDSI--------RKLENDGFRVTYLKPKNNGLITLSQLEEKIC--SDTILVSVML----VNNEIGVI 1548 (2602)
Q Consensus 1484 ~Vlv~~-~~~~s~~~~~--------~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~--~~t~lv~l~~----~~n~tG~~ 1548 (2602)
+|++++ +.|+++...+ ..+...|++++.++.++++.+|+++++++++ ++|++|++++ |+||||.+
T Consensus 117 ~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~~~~g~~D~e~l~~~l~~~~~tklV~i~~s~~~p~nptg~i 196 (427)
T 3i16_A 117 TMLSVCGEPYDTLHDVIGITENSNMGSLKEFGINYKQVDLKEDGKPNLEEIEKVLKEDESITLVHIQRSTGYGWRRALLI 196 (427)
T ss_dssp EEEESSSSCCGGGHHHHTCSCCCSSCCTGGGTCEEEECCCCTTSSCCHHHHHHHHHTCTTEEEEEEECSCCSSSSCCCCH
T ss_pred EEEEeCCCccHHHHHHHhccccchHHHHHHcCCEEEEecCccCCCcCHHHHHHHhhCCCCCEEEEEEcCCCCCCCCcccH
Confidence 999999 9999887555 3445569999999998888999999999999 8999999999 99999999
Q ss_pred cChHHHHHHhhh--cCCEEEEecccccCcccccCCCCCccEEEEccccccCCC---ceEEEEEecCCCCccccccccCCc
Q psy15216 1549 QPILEIGELCRS--KGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPK---GIGALYIRRNPRTRIEAQIHGGGH 1623 (2602)
Q Consensus 1549 ~~l~~I~~ia~~--~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K~~gp~---G~G~l~~~~~~~~~l~~~~~g~~~ 1623 (2602)
.|+++|+++|++ ||+++++|++|+.+........+++|++++|+||.+|+. ..|+++.++++++.+.........
T Consensus 197 ~dl~~i~~la~~~~~g~~livD~a~~~~~~~~~p~~~gaDiv~~S~sK~lgg~g~~~gG~i~~~~~li~~l~~~~~~~~~ 276 (427)
T 3i16_A 197 EDIKSIVDCVKNIRKDIICFVDNCYGEFMDTKEPTDVGADLIAGSLIKNIGGGIAPTGGYLAGTKDCIEKTSYRLTVPGI 276 (427)
T ss_dssp HHHHHHHHHHHHHCTTSEEEEECTTTTTSSSSCGGGGTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHHHHSCTTT
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCCccccccCCccccCCeEEEecCcccCCCCCCceEEEEEECHHHHHHHHHhcccCcc
Confidence 999999999999 999999999998776333333467899999999966542 249999998877776553211000
Q ss_pred cccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEe
Q psy15216 1624 EYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYIN 1679 (2602)
Q Consensus 1624 ~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~ 1679 (2602)
+... .+.......+..++.. ...++++..+.+.++.+.|.+ . ++.+.
T Consensus 277 --g~~~-~~~~~~a~~~l~gl~~----~~~r~~~~~~~a~~la~~L~~-~-g~~V~ 323 (427)
T 3i16_A 277 --GGEC-GSTFGVVRSMYQGLFL----APHISMEALKGAILCSRIMEL-A-GFEVM 323 (427)
T ss_dssp --GGGC-CCCTTCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH-T-TCEEE
T ss_pred --CccC-CccHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHh-C-CCeec
Confidence 0000 1111101112123322 355667778888888888887 3 44554
|
| >2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.3e-16 Score=207.18 Aligned_cols=305 Identities=14% Similarity=0.117 Sum_probs=205.5
Q ss_pred CHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCC-CCcEEEeCCHHHHHHHHHHhhhhhhccCCCE
Q psy15216 1406 DPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYAD-PREIIWTSGATESNNLAIKGAAHFYKKRGKH 1484 (2602)
Q Consensus 1406 ~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~-~~~iv~t~gaT~al~~al~~l~~~~~~~gd~ 1484 (2602)
++.+.+++.+.++....+... .+. .....++++++++++|.+ +++|+||+|+++|++.++.++.. -+|++
T Consensus 61 ~p~v~~a~~~~~~~~~~~~~~-~~~-----~~~~~~l~~~la~~~~~~~~~~v~~~~gg~ea~~~ai~~~~~---~~~~~ 131 (419)
T 2eo5_A 61 HPEVIKIGIEQMQKLAHAAAN-DFY-----NIPQLELAKKLVTYSPGNFQKKVFFSNSGTEAIEASIKVVKN---TGRKY 131 (419)
T ss_dssp CHHHHHHHHHHHTTSCCCSCS-CSC-----CHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHT---TSCCE
T ss_pred CHHHHHHHHHHHhhCcccccc-ccC-----CHHHHHHHHHHHHhCCCCcCCEEEEeCchHHHHHHHHHHHHH---hhCCc
Confidence 789999999998653211101 111 134577889999999987 78999999999999999998651 13899
Q ss_pred EEEcCCCCcchHHHHHHHH------hC-----CcEEEEeccCCCCC----------------cChhHHH-hhcc-----C
Q psy15216 1485 IITVQTEHKSVLDSIRKLE------ND-----GFRVTYLKPKNNGL----------------ITLSQLE-EKIC-----S 1531 (2602)
Q Consensus 1485 Vlv~~~~~~s~~~~~~~~~------~~-----G~~v~~v~~~~~~~----------------id~d~l~-~~i~-----~ 1531 (2602)
|++++|.|+++......+. +. ...++.++.+.++. +|+++|+ ++++ +
T Consensus 132 vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~ 211 (419)
T 2eo5_A 132 IIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSELVNRVIEFIEDYIFVNLVPPE 211 (419)
T ss_dssp EEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCCCSSSCTTCCCTTTCHHHHHHHHHHHHHHTHHHHTCCGG
T ss_pred EEEECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEECCCccccccccccccccchhhHHHHHHHHHHHHHhhccCCC
Confidence 9999999886544333221 11 12566777654322 4688999 9887 4
Q ss_pred CceEEEEeccccccccccC----hHHHHHHhhhcCCEEEEecccc-cCcc----cccCCCCCccEEEEccccccCC--Cc
Q psy15216 1532 DTILVSVMLVNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKI----DINIQNYKVDLMSFSAHKIYGP--KG 1600 (2602)
Q Consensus 1532 ~t~lv~l~~~~n~tG~~~~----l~~I~~ia~~~gi~vivD~a~~-~g~~----~~~l~~~~~D~~v~S~~K~~gp--~G 1600 (2602)
++++|+++..+|+||.+.| +++|.++|++||+++|+|++|+ ++.. .++.....+|++ |++|.+|+ -+
T Consensus 212 ~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~~g~~g~~~~~~~~~~~~d~~--t~sK~~~~G~~r 289 (419)
T 2eo5_A 212 EVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGKLFAIENFNTVPDVI--TLAKALGGGIMP 289 (419)
T ss_dssp GEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGTTTSC
T ss_pred CEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCcchhhHHhcCCCCCEE--EecccccCCccc
Confidence 5667777666677898777 9999999999999999999997 4422 122223456766 57795543 44
Q ss_pred eEEEEEecCCCCccccccccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeC
Q psy15216 1601 IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYING 1680 (2602)
Q Consensus 1601 ~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~ 1680 (2602)
+|+++++++++ .+ ... . ....+.+...+.+..++|+.... ..++.+++++++.+.|.+ + +....
T Consensus 290 iG~~~~~~~~~-~~-~~~------~-~~t~~~n~~~~~aa~aal~~~~~----~~~~~~~~~~~l~~~L~~-~--~~~~~ 353 (419)
T 2eo5_A 290 IGATIFRKDLD-FK-PGM------H-SNTFGGNALACAIGSKVIDIVKD----LLPHVNEIGKIFAEELQG-L--ADDVR 353 (419)
T ss_dssp CEEEEEEGGGC-CC--------------CCCCCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHTT-S--SSEEE
T ss_pred eEEEEEchHhh-cC-Ccc------c-CCCCCCCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH-h--hhheE
Confidence 89999998866 55 211 1 11234566777777788875432 778888999999999976 3 11110
Q ss_pred CCCCCCCceEEEEE-ec-CCcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHH
Q psy15216 1681 DMNNRIPHNLNISF-NF-IEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEID 1756 (2602)
Q Consensus 1681 ~~~~~~~~~~~~~~-~~-~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid 1756 (2602)
+ ...+..+.+ +. .... +...| +||.++++. . +++||+++...|+++++
T Consensus 354 ~----~g~~~~i~~~~~~~~~~-~~~~l~~~Gv~v~~~~----~-------------------~~lRis~~~~~t~e~i~ 405 (419)
T 2eo5_A 354 G----IGLAWGLEYNEKKVRDR-IIGESFKRGLLLLPAG----R-------------------SAIRVIPPLVISEEEAK 405 (419)
T ss_dssp E----ETTEEEEECSCHHHHHH-HHHHHHHTTEECEEET----T-------------------TEEEECCCTTCCHHHHH
T ss_pred e----eeEEEEEEEecCccHHH-HHHHHHHCCCEEecCC----C-------------------CEEEEECCCCCCHHHHH
Confidence 0 122333333 21 1133 55555 799988642 1 78999999889999999
Q ss_pred HHHHHHHHh
Q psy15216 1757 FTIKLLKMK 1765 (2602)
Q Consensus 1757 ~li~~L~~~ 1765 (2602)
+++++|++.
T Consensus 406 ~~l~~l~~~ 414 (419)
T 2eo5_A 406 QGLDILKKV 414 (419)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999873
|
| >3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.74 E-value=7.6e-17 Score=213.97 Aligned_cols=323 Identities=12% Similarity=0.067 Sum_probs=212.2
Q ss_pred CCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccc---
Q psy15216 7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYK--- 83 (2602)
Q Consensus 7 ~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~--- 83 (2602)
++.++.+.+++.+.+.... .+. +. + ...+...+++++++++++.++++|++++|+++|+++++.++.....
T Consensus 65 G~~~~~v~~a~~~~~~~~~--~~~--~~-~-~~~~~~~~l~~~la~~~~~~~~~v~~~~ggsea~~~al~~~~~~~~~~g 138 (449)
T 3a8u_X 65 GHTRKEIQEAVAKQLSTLD--YSP--GF-Q-YGHPLSFQLAEKITDLTPGNLNHVFFTDSGSECALTAVKMVRAYWRLKG 138 (449)
T ss_dssp CBSCHHHHHHHHHHTTTCS--CCC--SS-S-CCCHHHHHHHHHHHTTSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHhCC--Ccc--cc-c-cCCHHHHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHHHHHHhcC
Confidence 3458999999999886532 111 00 1 1123567889999999988788999999999999999988761100
Q ss_pred -cCCCEEEEcCCCCcccHH-HHHHHH----hCC-----cEEEEeccCCCC-----ccC--------hHHHHhhcc----C
Q psy15216 84 -KRGKHIITVQTEHKSVLD-SIRKLE----NDG-----FRVTYLKPKNNG-----LIT--------LSQLEEKIC----S 135 (2602)
Q Consensus 84 -~~gd~Vlv~~~~~~s~~~-~~~~~~----~~G-----~~v~~v~~~~~~-----~ld--------~e~l~~~i~----~ 135 (2602)
.+||+|++.++.|++... ++.... +.+ ..++.++.+..+ .+| +++|+++++ +
T Consensus 139 ~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~ 218 (449)
T 3a8u_X 139 QATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADELLKLIELHDAS 218 (449)
T ss_dssp CTTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCCCCGGGTTCSSSCSSSHHHHHHHHHHHHHHHCGG
T ss_pred CCCCCEEEEECCCcCCCChhhhhccCChhhccccCCCCCCCeEecCCccccCccccCChHHHHHHHHHHHHHHHHhcCCC
Confidence 167999999999987644 333221 000 123444433211 146 999999987 4
Q ss_pred CceEEEEecccCccccccc----HHHHHHHHHhcCCEEEEeccc-cccccc----ccCCCCCccEEEeccccccCCCC--
Q psy15216 136 DTILVSVMLVNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQ-AVGKID----INIQNYKVDLMSFSAHKIYGPKG-- 204 (2602)
Q Consensus 136 ~tklv~i~~~~npTG~~~~----l~~I~~la~~~g~~livD~a~-a~g~~~----~dl~~~~~D~~~~S~~K~~Gp~G-- 204 (2602)
++++|++++.+|+||.+.| +++|.++|++||+++|+|++| ++|... ++.....+|++ |++|.++. |
T Consensus 219 ~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~~di~--s~sK~l~~-G~~ 295 (449)
T 3a8u_X 219 NIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTGSMFGADSFGVTPDLM--CIAKQVTN-GAI 295 (449)
T ss_dssp GEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE--EECGGGGT-TSS
T ss_pred CEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCccccCcchhhhhcCCCCCEE--EEcccccC-CCC
Confidence 6778777777788999888 999999999999999999999 465321 12222346866 66796664 4
Q ss_pred -cEEEEEecCCCCcccceecCCCccccc---cccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhc--cC
Q psy15216 205 -IGALYIRRNPRTRIEAQIHGGGHEYGL---RSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMES--IE 278 (2602)
Q Consensus 205 -~G~l~~~~~~~~~l~~~~~g~~~~~~~---~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~--~~ 278 (2602)
+|++++++++++.+.+...+. ....+ ...+.+..+++++.++|+.... ++..++.+++.++++++|.+. ++
T Consensus 296 ~~G~~~~~~~~~~~l~~~~~~~-~~~~~~~~~t~~~~~~~~aa~~aal~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~ 372 (449)
T 3a8u_X 296 PMGAVIASTEIYQTFMNQPTPE-YAVEFPHGYTYSAHPVACAAGLAALCLLQK--ENLVQSVAEVAPHFEKALHGIKGAK 372 (449)
T ss_dssp CCEEEEEEHHHHHHHHTCSSCT-TSCSSCCCCTTTTCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHTTTTST
T ss_pred ceEEEEECHHHHHHhhccCccc-ccccccccCCCcccHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHhcCC
Confidence 899999987766554321000 00011 1234566777777788875543 356778888888888888761 22
Q ss_pred ceEEeCCCCCCCCceEEEEEcccC-h-----hHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEec
Q psy15216 279 EIYINGDMNNRIPHNLNISFNFIE-G-----ESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTI 350 (2602)
Q Consensus 279 g~~l~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~ 350 (2602)
.+....+ ...++.+.++... . .++...| +||.++++. +++||++
T Consensus 373 ~~~~~~~----~g~~~~i~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g------------------------~~iRis~ 424 (449)
T 3a8u_X 373 NVIDIRN----FGLAGAIQIAPRDGDAIVRPFEAGMALWKAGFYVRFGG------------------------DTLQFGP 424 (449)
T ss_dssp TEEEEEE----ETTEEEEEECCBTTBSSHHHHHHHHHHHHHTEECEEET------------------------TEEEECC
T ss_pred CeEEEee----eEEEEEEEEecCcccccccHHHHHHHHHHCCcEEecCC------------------------CEEEEEC
Confidence 2221111 1234455554321 1 1466555 688887541 5799999
Q ss_pred CCCCCHHHHHHHHHHHHhh
Q psy15216 351 GRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 351 ~~~~t~edid~li~~L~~~ 369 (2602)
+..++++|+++++++|++.
T Consensus 425 ~~~~t~~~i~~~l~~l~~~ 443 (449)
T 3a8u_X 425 TFNSKPQDLDRLFDAVGEV 443 (449)
T ss_dssp CTTCCHHHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHHH
Confidence 8889999999999999864
|
| >4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.1e-17 Score=216.71 Aligned_cols=281 Identities=14% Similarity=0.071 Sum_probs=190.5
Q ss_pred HHHHHHHHHHHh-CCC-----CCcEE--EeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEE
Q psy15216 43 IEKARNEVAQLI-YAD-----PREII--WTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVT 114 (2602)
Q Consensus 43 ~~~~r~~lA~~~-g~~-----~~~Iv--~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~ 114 (2602)
..++|+.+++++ |.. +++|. .+.++++++.++...+. .+.++||+|+++.|.|+++...++.. |++++
T Consensus 81 ~~~lr~~ia~~~~~~~~~~~~~~~i~~~~~~~g~ga~~~~~~~~~-~~~~~gd~Vlv~~p~y~~~~~~~~~~---g~~~~ 156 (409)
T 4eu1_A 81 IASFVEEAQKLCFGPTCAALRDGRIASCQTLGGTGALRIGGDLLN-RFVANCNRIYGPDVGYPNHESIFAKA---GMELT 156 (409)
T ss_dssp CHHHHHHHHHHHHCSSCHHHHTTCEEEEEESHHHHHHHHHHHHGG-GTSSSCCEEEEESSCCTHHHHHHHHT---TCEEE
T ss_pred cHHHHHHHHHHHcCCCchhhccCceeeeecccchHHHHHHHHHHH-HhcCCCCEEEEeCCCcHhHHHHHHHc---CCeEE
Confidence 467888999876 665 67784 49999999988754332 22378999999999999987776655 99999
Q ss_pred Eecc--CCCCccChHHHHhhcc---CCceEEEEecccCcccccccHHH---HHHHHHhcCCEEEEecccccccc------
Q psy15216 115 YLKP--KNNGLITLSQLEEKIC---SDTILVSVMLVNNEIGVIQPILE---IGELCRSKGVIFHCDAAQAVGKI------ 180 (2602)
Q Consensus 115 ~v~~--~~~~~ld~e~l~~~i~---~~tklv~i~~~~npTG~~~~l~~---I~~la~~~g~~livD~a~a~g~~------ 180 (2602)
.++. ++++.+|+++++++++ ++++++++++|+||||.+++.++ |+++|++||+++|+|++|+....
T Consensus 157 ~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~ 236 (409)
T 4eu1_A 157 PYSYYDPATKGLNLAGMLECLDKAPEGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYD 236 (409)
T ss_dssp EECCEETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHH
T ss_pred EEEeecCcCCcCcHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccCCcccc
Confidence 9987 3467899999999995 35678888999999999999554 89999999999999999764321
Q ss_pred --cc-cC-CCCCccEEEeccccccCCCC--cEEE--EEe-cC----CCCcccceecCCCccccccccCcchhHHHHHHHH
Q psy15216 181 --DI-NI-QNYKVDLMSFSAHKIYGPKG--IGAL--YIR-RN----PRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEA 247 (2602)
Q Consensus 181 --~~-dl-~~~~~D~~~~S~~K~~Gp~G--~G~l--~~~-~~----~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~a 247 (2602)
++ .+ ......+++.|++|.+|++| +||+ ++. ++ +.+.+.... .....+++.....++..+
T Consensus 237 ~~~~~~~~~~~~~~i~~~S~SK~~g~~G~riG~~~~v~~~~~~~~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~ 309 (409)
T 4eu1_A 237 AFVPRHLVDMVPNLIVAQSFSKNFGLYGHRCGALHISTASAEEAKRLVSQLALLI-------RPMYNNPPLYGAWVVSSI 309 (409)
T ss_dssp THHHHHHHTTSSCCEEEEECTTTSSCGGGCCEEEEEECSSHHHHHHHHHHHHHHH-------HHHHSSCCHHHHHHHHHH
T ss_pred hHHHHHHHhhCCcEEEEecCcccccCccCCceEEEEEeCCHHHHHHHHHHHHHHH-------hhhcCCCChHHHHHHHHH
Confidence 11 11 11233478889999999888 7987 444 33 333332211 011234555566666666
Q ss_pred HHHH------HHhHHHHHHHHHHHHHHHHHHHhhc-cCc-eEEeCCCCCCCCceEEEEEcccChhHHHHHh---CCeEEc
Q psy15216 248 FRLA------RIEMKEELKRILFLQKRLYNGLMES-IEE-IYINGDMNNRIPHNLNISFNFIEGESLLMAI---KDIAVS 316 (2602)
Q Consensus 248 l~~~------~~~~~~~~~~~~~l~~~l~~~L~~~-~~g-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L---~gI~v~ 316 (2602)
++.. ....++.++++.++++++.+.|.+. .++ +.+..+... .+.+...+.+ +...+ +||.+.
T Consensus 310 l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~------~~~~~~~~~~-~~~~ll~~~gv~v~ 382 (409)
T 4eu1_A 310 LKDPQLTALWKKELKQMSSRIAEVRKRLVSELKACGSVHDWSHIERQVG------MMAYTGLTRE-QVELLRSEYHIYMT 382 (409)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHSCS------SEEECCCCHH-HHHHHHHHHCEECC
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceecCCce------EEEEeCCCHH-HHHHHHHcCCEEEc
Confidence 6621 2336778889999999999999772 111 333322221 1222333333 33333 488776
Q ss_pred ccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 317 SGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 317 ~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
++ .||+++.. +++++++++++|++.
T Consensus 383 p~---------------------------~Ri~~~~~-~~~~i~~~~~~l~~~ 407 (409)
T 4eu1_A 383 LN---------------------------GRAAVSGL-NSTNVEYVSQAIHNV 407 (409)
T ss_dssp TT---------------------------CEEEGGGC-CTTTHHHHHHHHHHH
T ss_pred CC---------------------------CEEEEEec-CHhhHHHHHHHHHHH
Confidence 32 48888755 456699999999863
|
| >3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.74 E-value=5.2e-17 Score=209.78 Aligned_cols=228 Identities=12% Similarity=0.061 Sum_probs=171.0
Q ss_pred HHHHHHHHHHHhCCCCCcEEE--eCCHHHHHHHHHHhcccccccCCCEEEEcC-CCCcccHHHH--------HHHHhCCc
Q psy15216 43 IEKARNEVAQLIYADPREIIW--TSGATESNNLAIKGAAHFYKKRGKHIITVQ-TEHKSVLDSI--------RKLENDGF 111 (2602)
Q Consensus 43 ~~~~r~~lA~~~g~~~~~Iv~--t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~-~~~~s~~~~~--------~~~~~~G~ 111 (2602)
.+++++.+|+++|++. .+++ ++|+++|+.+++.++. +|||+|++++ +.|+++...+ ..++..|+
T Consensus 76 ~~~Le~~lA~l~g~e~-alv~p~~~sGt~A~~~al~all----~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~ 150 (427)
T 3hvy_A 76 RDSLDRVYANIFNTES-AFVRPHFVNGTHAIGAALFGNL----RPNDTMMSICGMPYDTLHDIIGMDDSKKVGSLREYGV 150 (427)
T ss_dssp HHHHHHHHHHHHTCSE-EEEETTCCSHHHHHHHHHHHTC----CTTCEEEECSSSCCGGGHHHHTCCTTCCSCCTGGGTC
T ss_pred HHHHHHHHHHHhCCCc-eEEeCCCCcHHHHHHHHHHHhc----CCCCEEEEeCCCCchhHHHHhccccchhhhHHHHcCC
Confidence 7888999999999863 2443 7889999999999987 8999999998 9999876554 33455699
Q ss_pred EEEEeccCCCCccChHHHHhhcc--CCceEEEEec----ccCcccccccHHHHHHHHHh--cCCEEEEeccccccccccc
Q psy15216 112 RVTYLKPKNNGLITLSQLEEKIC--SDTILVSVML----VNNEIGVIQPILEIGELCRS--KGVIFHCDAAQAVGKIDIN 183 (2602)
Q Consensus 112 ~v~~v~~~~~~~ld~e~l~~~i~--~~tklv~i~~----~~npTG~~~~l~~I~~la~~--~g~~livD~a~a~g~~~~d 183 (2602)
+++.++. +++.+|+++++++++ ++||+|++++ |+||||.+.|+++|+++|++ +|+++++|++|+.+.....
T Consensus 151 ~~~~v~~-~~~~~d~e~l~~~i~~~~~tklV~i~~s~gyp~nptg~v~dl~~i~~ia~~~~~g~~livD~a~~~~~~~~~ 229 (427)
T 3hvy_A 151 KYKMVDL-KDGKVDINTVKEELKKDDSIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIREVNENVIVFVDNCYGEFVEEKE 229 (427)
T ss_dssp EEEECCC-BTTBCCHHHHHHHHHHCTTEEEEEEESSCCSSSSCCCCHHHHHHHHHHHHHHCSSSEEEEECTTCTTTSSSC
T ss_pred EEEEecC-CCCCcCHHHHHHHhhCCCCCEEEEEECCCCCCCCccccHHHHHHHHHHHHHhCCCCEEEEECCccccccCCC
Confidence 9999998 678899999999998 8999999999 99999999999999999999 8999999999987763223
Q ss_pred CCCCCccEEEeccccccCCC---CcEEEEEecCCCCcccceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHH
Q psy15216 184 IQNYKVDLMSFSAHKIYGPK---GIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELK 260 (2602)
Q Consensus 184 l~~~~~D~~~~S~~K~~Gp~---G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~ 260 (2602)
...+++|++++|+||.+|+. ..|++++++++++.++......+. .... .++......+...+.. .....+
T Consensus 230 p~~~gaDiv~~S~sK~lgg~g~~~GG~i~~~~~li~~l~~~~~~~~~--g~~~-~~~~~~a~~~~~gl~~----~~~r~~ 302 (427)
T 3hvy_A 230 PTDVGADIIAGSLIKNIGGGIATTGGYIAGKEEYVTQATFRVTVPGI--GGEC-GSTFGVMRSLYEGLFM----APHVTI 302 (427)
T ss_dssp GGGGTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHHHHSCTTT--GGGC-CCCTTCHHHHHHHHHH----HHHHHH
T ss_pred CcccCCeEEEECCcccccccccceEEEEEECHHHHHHHHHHhhcCCc--cccc-CCCHHHHHHHHHhHhH----HHHHHH
Confidence 33467899999999977652 249999998887777653210000 0011 1212212222233332 345666
Q ss_pred HHHHHHHHHHHHHhhccCceEEeCC
Q psy15216 261 RILFLQKRLYNGLMESIEEIYINGD 285 (2602)
Q Consensus 261 ~~~~l~~~l~~~L~~~~~g~~l~~~ 285 (2602)
+..+++.++.+.|.+ .++++++.
T Consensus 303 ~~~~~a~~la~~L~~--~g~~V~p~ 325 (427)
T 3hvy_A 303 EAVKGAVFCARIMEL--AGFDVLPK 325 (427)
T ss_dssp HHHHHHHHHHHHHHH--TTCEEESC
T ss_pred HHHHHHHHHHHHHHh--CCCeecCC
Confidence 778888888888877 35566543
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.5e-17 Score=221.33 Aligned_cols=286 Identities=13% Similarity=0.028 Sum_probs=187.6
Q ss_pred CCcEEEeCCHHHHHHHHHHhhhh-hhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCC--CCCcChhHHHhhcc
Q psy15216 1454 PREIIWTSGATESNNLAIKGAAH-FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKIC 1530 (2602)
Q Consensus 1454 ~~~iv~t~gaT~al~~al~~l~~-~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~id~d~l~~~i~ 1530 (2602)
+++|++|+|+++++..++.++.. ..+++||+|++++|.|+.+...... ...|++++.++.++ ++.+|+++|+++++
T Consensus 165 ~~~I~~t~G~~eal~~~~~~l~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~-~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~ 243 (546)
T 2zy4_A 165 SVNLFAVEGGTAAMAYIFESLKLNGLLKAGDKVAIGMPVFTPYIEIPEL-AQYALEEVAINADPSLNWQYPDSELDKLKD 243 (546)
T ss_dssp GEEEEEEEHHHHHHHHHHHHHHHTTSSCTTCEEEEEESCCHHHHHHHHS-TTSCCEEEEEECBGGGTTBCCHHHHGGGGS
T ss_pred cceEEEECCHHHHHHHHHHHhhhhhcCCCCCEEEEeCCCCccHHHHHHH-cCCCcEEEEEecCcccCCCCCHHHHHHhhC
Confidence 57899999999999999988410 1137999999999999998765433 23478999998765 35689999999998
Q ss_pred CCceEEEEeccccccccccC---hHHHHHHh--hhcCCEEEEecccccCcc-cccCCC--CCccEEEEccccccCCCc--
Q psy15216 1531 SDTILVSVMLVNNEIGVIQP---ILEIGELC--RSKGVIFHCDAAQAVGKI-DINIQN--YKVDLMSFSAHKIYGPKG-- 1600 (2602)
Q Consensus 1531 ~~t~lv~l~~~~n~tG~~~~---l~~I~~ia--~~~gi~vivD~a~~~g~~-~~~l~~--~~~D~~v~S~~K~~gp~G-- 1600 (2602)
+++++|++++|+||||.++| +++|+++| ++||+++|+|++|+.... +.++.. .+..+++.|+||.+|++|
T Consensus 244 ~~~k~v~l~~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~~~s~~~~~~~~~i~~~S~SK~~g~~GlR 323 (546)
T 2zy4_A 244 PAIKIFFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADDFQSLFAICPENTLLVYSFSKYFGATGWR 323 (546)
T ss_dssp TTEEEEEEESSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTTCCCHHHHCGGGEEEEEESTTTTTCGGGC
T ss_pred CCCeEEEEECCCCCCCccCCHHHHHHHHHHHHhccCCcEEEEeCcchhhcccCcCHHHhCCCCEEEEEeCccccCCCCcc
Confidence 99999999999999999998 56678888 789999999999874321 111111 135688999999988888
Q ss_pred eEEEEEecC-CCCcccc------------ccccCCc-cc----------------cCCCCCcchhHHHHHHH-HH-HHH-
Q psy15216 1601 IGALYIRRN-PRTRIEA------------QIHGGGH-EY----------------GLRSGTLATHQIVGMGE-AF-RLA- 1647 (2602)
Q Consensus 1601 ~G~l~~~~~-~~~~l~~------------~~~g~~~-~~----------------~~~~gt~~~~~~~al~~-aL-~~~- 1647 (2602)
+||++++++ +++.+.. .+..+.. +. .....+.+.+.+.++.. ++ .++
T Consensus 324 iG~~~~~~~~l~~~l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~a~~a~~all~ 403 (546)
T 2zy4_A 324 LGVVAAHQQNVFDLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMALFSLFALMD 403 (546)
T ss_dssp EEEEEEESSCHHHHHHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGCSSCHHHHHHHHHHHHHHHHC
T ss_pred eEEEEECCHHHHHHHHhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhccCCCCcHHHHHHHHHHHHHHHh
Confidence 899999875 4444311 1110000 00 01112344444443311 11 122
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEec-----------------CCcHH-HHHhc-
Q psy15216 1648 --RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-----------------IEGES-LLMAI- 1706 (2602)
Q Consensus 1648 --~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~-----------------~~~~~-~~~~L- 1706 (2602)
....+..++.++++++.+.+.|.. ++... ++.. .-...+.++. .+..+ +...+
T Consensus 404 ~~~~~~~~~r~~~~~r~~~l~~~L~~---~~~~~-~~~~--~~~l~~~l~~~~~~~~~~~~~~wl~~~~~~~~~l~~ll~ 477 (546)
T 2zy4_A 404 EADEYKHTLKQLIRRRETTLYRELGM---PPLRD-ENAV--DYYTLIDLQDVTAKLYGEAFSEWAVKQSSTGDMLFRIAD 477 (546)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHGGGTS---SCCCC-TTBC--CSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhcCC---CcccC-CCCe--eEEEEEEHHHhhcccccHHHHHHhhccCCHHHHHHHHHH
Confidence 234566677777777777777731 22111 1111 1111222221 11223 23333
Q ss_pred -CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1707 -KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1707 -~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
+||.+.+|..|..+ .+++||+++ ..+.+++++++++|++.
T Consensus 478 ~~gV~v~pG~~F~~~------------------~~~iRis~~-~~~~e~i~~~~~~l~~~ 518 (546)
T 2zy4_A 478 ETGIVLLPGRGFGSN------------------RPSGRASLA-NLNEYEYAAIGRALRKM 518 (546)
T ss_dssp HHSCCCEESSCTTCS------------------SCEEEEESS-SSCHHHHHHHHHHHHHH
T ss_pred HCCEEEeCccccCCC------------------CCeEEEEec-cCCHHHHHHHHHHHHHH
Confidence 79999999987542 278999997 35789999999999873
|
| >1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.4e-16 Score=210.66 Aligned_cols=321 Identities=14% Similarity=0.089 Sum_probs=210.1
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCC
Q psy15216 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK 87 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd 87 (2602)
..++.+.+++.+.+.... +... ++ ..+...+++++++++++.++++|++++|+++|++.++.++.. ...++
T Consensus 59 ~~~p~v~~a~~~~~~~~~-~~~~-----~~-~~~~~~~l~~~la~~~~~~~~~v~~~~gg~ea~~~a~~~~~~--~~~~~ 129 (433)
T 1zod_A 59 HCHPEIVSVIGEYAGKLD-HLFS-----EM-LSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKL--VTGKY 129 (433)
T ss_dssp BTCHHHHHHHHHHHHHCC-CCCT-----TC-CCHHHHHHHHHHHHHSCTTCCEEEEESCHHHHHHHHHHHHHH--HHTCC
T ss_pred CCCHHHHHHHHHHHHhCc-cccc-----cc-CCHHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHH--hhCCC
Confidence 358999999999887532 1111 11 123567888999999998888999999999999999987541 12468
Q ss_pred EEEEcCCCCcccHHHHHHHHh------C---CcEEEEeccCC----CC--------ccChHHHHhhcc----CCceEEEE
Q psy15216 88 HIITVQTEHKSVLDSIRKLEN------D---GFRVTYLKPKN----NG--------LITLSQLEEKIC----SDTILVSV 142 (2602)
Q Consensus 88 ~Vlv~~~~~~s~~~~~~~~~~------~---G~~v~~v~~~~----~~--------~ld~e~l~~~i~----~~tklv~i 142 (2602)
.|++.++.|++.......+.. . ...++.++.+. .+ .+|+++|+++++ +++++|++
T Consensus 130 ~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~ 209 (433)
T 1zod_A 130 EIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIA 209 (433)
T ss_dssp EEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEEE
T ss_pred eEEEECCCcCCCChhHHhhcCCccccccCCCCCCceEecCCcccccccCCchhhhHHHHHHHHHHHHHhcCCCCeEEEEE
Confidence 999999988876544332210 0 01234443321 11 246999999986 56777777
Q ss_pred ecccCccccccc----HHHHHHHHHhcCCEEEEecccc-ccccc----ccCCCCCccEEEeccccccCC-CCcEEEEEec
Q psy15216 143 MLVNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKID----INIQNYKVDLMSFSAHKIYGP-KGIGALYIRR 212 (2602)
Q Consensus 143 ~~~~npTG~~~~----l~~I~~la~~~g~~livD~a~a-~g~~~----~dl~~~~~D~~~~S~~K~~Gp-~G~G~l~~~~ 212 (2602)
+.++||||.+.+ +++|.++|++||+++|+|++|+ ++... ++.....+|++ |++|.+|+ -.+|++++++
T Consensus 210 ~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~g~~g~~~~~~~~~~~~di~--s~sK~~~~G~~ig~~~~~~ 287 (433)
T 1zod_A 210 EPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGVTPDIL--TLSKTLGAGLPLAAIVTSA 287 (433)
T ss_dssp CSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEE--EECHHHHTTSSCEEEEECH
T ss_pred ccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCchHhHHhhcCCCCCEE--EecccccCCCCeeEEEEhH
Confidence 666788998776 9999999999999999999998 44221 12123346765 67796654 2389999998
Q ss_pred CCCCcccceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhc---cCceEEeCCCCCC
Q psy15216 213 NPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMES---IEEIYINGDMNNR 289 (2602)
Q Consensus 213 ~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~---~~g~~l~~~~~~~ 289 (2602)
++++.+.+... ......+.+..+.+++.++++.... +...++.++++++++++|.+. .+.+....+.
T Consensus 288 ~~~~~~~~~~~-----~~~~t~~~~~~~~~a~~aal~~~~~--~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~--- 357 (433)
T 1zod_A 288 AIEERAHELGY-----LFYTTHVSDPLPAAVGLRVLDVVQR--DGLVARANVMGDRLRRGLLDLMERFDCIGDVRGR--- 357 (433)
T ss_dssp HHHHHHHHTTC-----CCCCTTTTCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEE---
T ss_pred HHHHhhccCCC-----CCCCCCCcCHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEE---
Confidence 77666644110 0001234466677777788875443 245667777777787777652 2443332221
Q ss_pred CCceEEEEEccc---------ChhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHH
Q psy15216 290 IPHNLNISFNFI---------EGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKE 358 (2602)
Q Consensus 290 ~~~~~~~~~~~~---------~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~ed 358 (2602)
..++.+.++.. ...++...| +||.++++..+.. .+++||+++...+++|
T Consensus 358 -g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~-------------------~~~lRi~~~~~~t~~~ 417 (433)
T 1zod_A 358 -GLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIVQLPGM-------------------GGVFRIAPPLTVSEDE 417 (433)
T ss_dssp -TTEEEEEEEEETTTTEECTTHHHHHHHHHHHTTEECCEECCTTS-------------------CCEEEECCCTTCCHHH
T ss_pred -EEEEEEEEecCccccCCChHHHHHHHHHHHHCCCeEeccCCCCC-------------------CCEEEEECCcCCCHHH
Confidence 23334444421 134566655 7999987753321 2789999988899999
Q ss_pred HHHHHHHHHhh
Q psy15216 359 IDFTIKLLKMK 369 (2602)
Q Consensus 359 id~li~~L~~~ 369 (2602)
+++++++|++.
T Consensus 418 i~~~l~~l~~~ 428 (433)
T 1zod_A 418 IDLGLSLLGQA 428 (433)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999864
|
| >3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.73 E-value=4.1e-17 Score=215.35 Aligned_cols=327 Identities=13% Similarity=0.049 Sum_probs=196.3
Q ss_pred CCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccc----c
Q psy15216 9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYK----K 84 (2602)
Q Consensus 9 ~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~----~ 84 (2602)
.+|.+.+++.+.+.....+... ....+...+++++++++++.++++|++++|+++|+..++.++..... .
T Consensus 46 ~~p~v~~a~~~~~~~~~~~~~~------~~~~~~~~~l~~~la~~~~~~~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~ 119 (430)
T 3i4j_A 46 GRAEVGERMAAQAARLPFVHGS------QFSSDVLEEYAGRLARFVGLPTFRFWAVSGGSEATESAVKLARQYHVERGEP 119 (430)
T ss_dssp CCHHHHHHHHHHHHHCCCCCTT------TCEEHHHHHHHHHHHHHTTCTTCEEEEESSHHHHHHHHHHHHHHHHHHTTCT
T ss_pred CCHHHHHHHHHHHHhccccccc------ccCCHHHHHHHHHHHHhCCCCCCEEEEeCcHHHHHHHHHHHHHHHHHhcCCC
Confidence 4899999999988763211111 11224567889999999998888999999999999999998762100 2
Q ss_pred CCCEEEEcCCCCcccHHHHHHHHhCCc------------EEEEeccCCC---CccChHHHHhhcc----CCceEEEEecc
Q psy15216 85 RGKHIITVQTEHKSVLDSIRKLENDGF------------RVTYLKPKNN---GLITLSQLEEKIC----SDTILVSVMLV 145 (2602)
Q Consensus 85 ~gd~Vlv~~~~~~s~~~~~~~~~~~G~------------~v~~v~~~~~---~~ld~e~l~~~i~----~~tklv~i~~~ 145 (2602)
+++.|++.++.|+.+......+..... .+..++.+.. +..|+++|+++++ +++++|++..+
T Consensus 120 ~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~ 199 (430)
T 3i4j_A 120 GRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDPARNGAEDAEGLRALLEREGPETVAAFMAEPV 199 (430)
T ss_dssp TCCEEEEETTC-------------------------CGGGSCEECCCCTTSCHHHHHTHHHHHHHHHCGGGEEEEEECSS
T ss_pred CCcEEEEEeCCcCCCCcccccccCccccccccCCcCCCCCceEcCCCcccchhhHHHHHHHHHHHhcCCCCEEEEEEcCc
Confidence 478999999999987654443311100 2223332222 2346789999886 45567777676
Q ss_pred cC-ccccccc----HHHHHHHHHhcCCEEEEecccc-cccc--c--ccCC-CCCccEEEeccccccCCCC---cEEEEEe
Q psy15216 146 NN-EIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKI--D--INIQ-NYKVDLMSFSAHKIYGPKG---IGALYIR 211 (2602)
Q Consensus 146 ~n-pTG~~~~----l~~I~~la~~~g~~livD~a~a-~g~~--~--~dl~-~~~~D~~~~S~~K~~Gp~G---~G~l~~~ 211 (2602)
+| ++|.+.+ +++|.++|++||+++|+|++|+ ++.. . .+.. ...+|+++ ++|.+|. | +|+++++
T Consensus 200 ~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~g~~~~~~~~~~~~~di~t--~sK~l~~-G~~r~G~~~~~ 276 (430)
T 3i4j_A 200 VGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGSPLALSRWSGVTPDIAV--LGKGLAA-GYAPLAGLLAA 276 (430)
T ss_dssp CCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTTCCCSEEE--ECGGGTT-TSSCCEEEEEC
T ss_pred ccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhhhhcCCCCcEEE--EcccccC-CccccEEEEEC
Confidence 77 8998887 9999999999999999999987 4321 1 1112 33467664 6696664 4 7999999
Q ss_pred cCCCCcccceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhh---ccCceEEeCCCCC
Q psy15216 212 RNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLME---SIEEIYINGDMNN 288 (2602)
Q Consensus 212 ~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~---~~~g~~l~~~~~~ 288 (2602)
+++++.+.+..... ......+.+..+.+++.++|+.... ++..++.+++.+++++.|.+ .++++....+.
T Consensus 277 ~~i~~~~~~~~~~~---~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-- 349 (430)
T 3i4j_A 277 PQVYETVMGGSGAF---MHGFTYAGHPVSVAAGLSVLDIVER--EDLTGAAKERGAQLLAGLQALQARFPQMMQVRGT-- 349 (430)
T ss_dssp HHHHHHHHHTTCBC---CCCCTTTTCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEE--
T ss_pred HHHHHHHhccCCcc---cccCCCCCCHHHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEE--
Confidence 88777665420000 0011235566777777788875432 23344444444444444433 24555544322
Q ss_pred CCCceEEEEEccc----------ChhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCH
Q psy15216 289 RIPHNLNISFNFI----------EGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTE 356 (2602)
Q Consensus 289 ~~~~~~~~~~~~~----------~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~ 356 (2602)
..+..+.+... ...++...| +||.++++..+..+ ...+++||+++...++
T Consensus 350 --g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~----------------~~~~~iRi~~~~~~t~ 411 (430)
T 3i4j_A 350 --GLLLGVVLGDLATGQAFETPGIASRIGAAALKRGLITYPGSGAEPN----------------GRGDHLLLGPPLSITA 411 (430)
T ss_dssp --TTEEEEEEC------------CHHHHHHHHHHTTEECC---------------------------CEEEECCCTTCCH
T ss_pred --EEEEEEEeccccccCCCccHHHHHHHHHHHHhCCCEEEecccccCC----------------CCCCEEEEECCCCCCH
Confidence 12333444321 124455555 79999876422211 1137899999988999
Q ss_pred HHHHHHHHHHHhh
Q psy15216 357 KEIDFTIKLLKMK 369 (2602)
Q Consensus 357 edid~li~~L~~~ 369 (2602)
+++++++++|++.
T Consensus 412 e~i~~~l~~l~~~ 424 (430)
T 3i4j_A 412 AEVDGLLALLAGA 424 (430)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999964
|
| >2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=2.6e-16 Score=206.47 Aligned_cols=307 Identities=15% Similarity=0.178 Sum_probs=207.1
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhc---c
Q psy15216 1404 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYK---K 1480 (2602)
Q Consensus 1404 ~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~---~ 1480 (2602)
..++.+.+++.+.++... +... .+ ..+...++++++++++| .++++|++|+++|+..++.++..... .
T Consensus 73 ~~~p~v~~ai~~~~~~~~-~~~~-~~-----~~~~~~~l~~~la~~~g--~~~v~~~~ggteA~~~al~~~~~~~~~~~~ 143 (420)
T 2pb2_A 73 HCHPALVEALKSQGETLW-HTSN-VF-----TNEPALRLGRKLIDATF--AERVLFMNSGTEANETAFKLARHYACVRHS 143 (420)
T ss_dssp BTCHHHHHHHHHHHTTCC-CCCT-TS-----CCHHHHHHHHHHHHHSS--CSEEEEESSHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHhcc-cccC-cc-----CCHHHHHHHHHHHhhCC--CCeEEEeCCHHHHHHHHHHHHHHHhhhccC
Confidence 357889999999887532 2211 11 12457889999999998 46899999999999999998761100 0
Q ss_pred CC-CEEEEcCCCCcchHHHHHHHHhCCcE------------EEEeccCCCCCcChhHHHhhccCCceEEEEecccccccc
Q psy15216 1481 RG-KHIITVQTEHKSVLDSIRKLENDGFR------------VTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGV 1547 (2602)
Q Consensus 1481 ~g-d~Vlv~~~~~~s~~~~~~~~~~~G~~------------v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~ 1547 (2602)
+| ++|+++++.|++....+..+ .|.. +..++. .|+++|++++++++++|++++++|++|.
T Consensus 144 ~g~~~vi~~~~~yh~~~~~~~~~--~g~~~~~~~~~p~~~~~~~~~~-----~d~~~le~~i~~~~~~vi~~p~~~~gG~ 216 (420)
T 2pb2_A 144 PFKTKIIAFHNAFHGRSLFTVSV--GGQPKYSDGFGPKPADIIHVPF-----NDLHAVKAVMDDHTCAVVVEPIQGEGGV 216 (420)
T ss_dssp TTCCEEEEETTCCCCSSHHHHHH--SSCHHHHTTSSSCCSCEEEECT-----TCHHHHHHHCCTTEEEEEECSEETTTTS
T ss_pred CCCCEEEEEeCCcCCcCHHHHHh--cCCccccccCCCCCCCeEEecC-----CCHHHHHHHhccCceEEEEeCCcCCCCe
Confidence 56 59999999987764433222 1221 444443 3899999999999999999999998886
Q ss_pred -c---cChHHHHHHhhhcCCEEEEecccc-cCcc--c--ccCCCCCccEEEEccccccCCCc--eEEEEEecCCCCcccc
Q psy15216 1548 -I---QPILEIGELCRSKGVIFHCDAAQA-VGKI--D--INIQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEA 1616 (2602)
Q Consensus 1548 -~---~~l~~I~~ia~~~gi~vivD~a~~-~g~~--~--~~l~~~~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~ 1616 (2602)
+ .++++|.++|++||+++|+|++|+ ++.. . ++.....+|++ |++|.+| .| +|++++++++++.+.+
T Consensus 217 ~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~~~~~~~~~~~~dii--t~sK~l~-~G~~iG~~~~~~~l~~~l~~ 293 (420)
T 2pb2_A 217 QAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFAYMHYGVTPDIL--TSAKALG-GGFPVSAMLTTQEIASAFHV 293 (420)
T ss_dssp EECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE--EECGGGG-TTSCCEEEEECHHHHTTCC-
T ss_pred ecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCcHHHHHhcCCCCCeE--Eeccccc-CCCceEEEEEhHHHHHhhcC
Confidence 2 348999999999999999999995 2211 1 11223357877 5679665 24 8999999876665543
Q ss_pred ccccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---CCcEEEeCCCCCCCCceEEEE
Q psy15216 1617 QIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMES---IEEIYINGDMNNRIPHNLNIS 1693 (2602)
Q Consensus 1617 ~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~---~~gl~i~~~~~~~~~~~~~~~ 1693 (2602)
...+ ...+.+...+.++.++|+.... ++..++.+++++++.+.|.+. .+.+....+ ...+..+.
T Consensus 294 ~~~~-------~t~~~~~~~~aa~~a~L~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~----~g~~~~v~ 360 (420)
T 2pb2_A 294 GSHG-------STYGGNPLACAVAGAAFDIINT--PEVLQGIHTKRQQFVQHLQAIDEQFDIFSDIRG----MGLLIGAE 360 (420)
T ss_dssp ---C-------CEECCCHHHHHHHHHHHHHHSS--HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEE----ETTEEEEE
T ss_pred CCcC-------cccCcCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEe----cceEEEEE
Confidence 2111 1123455666666677775432 456777888888888888662 233322211 12334455
Q ss_pred EecC---CcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1694 FNFI---EGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1694 ~~~~---~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
++.. +..++...| +||.++++. + +++||+++...|.+|+++++++|++.
T Consensus 361 ~~~~~~~~~~~l~~~l~~~Gi~v~~~~----~-------------------~~iRl~~~~~~t~eei~~~~~~l~~~ 414 (420)
T 2pb2_A 361 LKPKYKGRARDFLYAGAEAGVMVLNAG----A-------------------DVMRFAPSLVVEEADIHEGMQRFAQA 414 (420)
T ss_dssp ECGGGTTCHHHHHHHHHHTTEECEESS----T-------------------TEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred ECCCchHHHHHHHHHHHHCCCEEEeCC----C-------------------CEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5432 345666665 799887652 1 68999998889999999999999874
|
| >3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.7e-16 Score=195.68 Aligned_cols=355 Identities=13% Similarity=0.170 Sum_probs=226.6
Q ss_pred CcccHHHHHHHHHhcCCCccccceeeeeceeeeccCCCCCCCHHHHHHHHHHHhhcc--CCCCCccchhHHHHHHHHHHH
Q psy15216 1365 SPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDATTPIDPRVVDKMIPYLRVQF--GNPASRNHIYGWTAEKAIEKA 1442 (2602)
Q Consensus 1365 ~~~~~~~v~~aL~~~g~~~~~~ei~~iP~~~v~L~~~~~~~~~~v~eal~~~l~~~~--~np~~~~~~~~~~~~~~~~~l 1442 (2602)
||+-+..+.+.++.+ ...|.+++.. .-.++.+++++-..+.+.+ |+|+...|........+..-+
T Consensus 39 Dpei~~~i~~E~~RQ-----~~~ieLIASE--------N~~S~aV~~a~gS~ltnKYaEGyPg~RyYgGce~vD~iE~la 105 (490)
T 3ou5_A 39 DPEMWELLQREKDRQ-----CRGLELIASE--------NFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLC 105 (490)
T ss_dssp CHHHHHHHHHHHHHH-----HHSEECCTTC--------CCCCHHHHHHHTSGGGTCCCCC----------CHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH-----HcCceEecCC--------CcCCHHHHHHhcCcccccccCCCCCccccCCChHHHHHHHHH
Confidence 466666666655432 3445666643 3556789999999998854 788876666555666677778
Q ss_pred HHHHHHHhCCCCCc--EEEe-CCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHH-----HHHhCCcEEEEe--
Q psy15216 1443 RNEVAQLIYADPRE--IIWT-SGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIR-----KLENDGFRVTYL-- 1512 (2602)
Q Consensus 1443 r~~ia~~~g~~~~~--iv~t-~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~-----~~~~~G~~v~~v-- 1512 (2602)
+++.+++||+++.. |=+. .|++.|+..++.+++ +|||+|+..+..|..+..... .....|.-+..+
T Consensus 106 ~~rak~lF~a~~A~w~VNVQP~SGs~AN~avy~All----~PGD~ilg~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~Y 181 (490)
T 3ou5_A 106 QRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALL----QPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPY 181 (490)
T ss_dssp HHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHC----C-CCCEECBC----------------------------CB
T ss_pred HHHHHHHhCCCccccCCCCCcCCHHHHHHHHHHHHc----CCCCEEEecccCCCCcccccccCCCccccccccccccccc
Confidence 88999999998763 2223 488999999999998 999999999999888765431 111223333333
Q ss_pred ccCC-CCCcChhHHHhhcc-CCceEEEEeccccccccccChHHHHHHhhhcCCEEEEecccccCc-----ccccCCCCCc
Q psy15216 1513 KPKN-NGLITLSQLEEKIC-SDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGK-----IDINIQNYKV 1585 (2602)
Q Consensus 1513 ~~~~-~~~id~d~l~~~i~-~~t~lv~l~~~~n~tG~~~~l~~I~~ia~~~gi~vivD~a~~~g~-----~~~~l~~~~~ 1585 (2602)
.+++ ++.||+|++++... .++++|++-.-. .-..+|++++.+||++.|+++++|.||..|. .|-++. .+
T Consensus 182 ~vd~~t~~IDyd~~~~~A~~~kPklIi~G~Sa--Y~r~id~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~~psP~~--~A 257 (490)
T 3ou5_A 182 KLNPKTGLIDYNQLALTARLFRPRLIIAGTSA--YARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFK--HA 257 (490)
T ss_dssp CEETTTTEECHHHHHHHHHHHCCSEEEECCSS--CCSCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGG--TC
T ss_pred ccCCCCCcccHHHHHHHHhhcCCCeEEECCcc--CccccCHHHHHHHHhhcccEEEechhhhhhhhcccccCCccc--cc
Confidence 3453 57899999999886 478887775433 3356799999999999999999999997654 333333 27
Q ss_pred cEEEEcccc-ccCCCceEEEEEecCC---------------CCccccccccCCccccCCCCCcchhHHHHHHHHHHH-HH
Q psy15216 1586 DLMSFSAHK-IYGPKGIGALYIRRNP---------------RTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRL-AR 1648 (2602)
Q Consensus 1586 D~~v~S~~K-~~gp~G~G~l~~~~~~---------------~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~-~~ 1648 (2602)
|++++|.|| +.||+| |+++.+++. .+++....+.| ..|.|..+.++|.+.|+.. ..
T Consensus 258 DvVTtTTHKTLrGPrG-G~Il~~~~~~~~~~k~~~~~~~~~~kkin~aVFPg------~qggp~~h~IAAkAVaf~Ea~~ 330 (490)
T 3ou5_A 258 DIVTTTTHKTLRGARS-GLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPS------LQGGPHNHAIAAVAVALKQACT 330 (490)
T ss_dssp SEEEEESSSTTCSCSC-EEEEEECSEEEECC--CCEEECCCHHHHHHHHTTT------TCSSCCHHHHHHHHHHHHHHHS
T ss_pred eEEeccccccccCCCc-eEEEeccccccccccccchhHHHHHHHHHhhcCcc------ccccchHHHHHHHHHHHHHHHh
Confidence 999999999 889997 999988742 22233333323 2367888999999888873 55
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEec--CCcHHHHHhc--CCEEEccccccCCCCCCh
Q psy15216 1649 IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF--IEGESLLMAI--KDIAVSSGSACTSASLEP 1724 (2602)
Q Consensus 1649 ~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~L--~gI~v~~g~~~~~~~~~~ 1724 (2602)
..+..+.++...+++.|.+.|.+ .|+.+..-. .-.++..+.+.. ..+......| .+|.+.....+...
T Consensus 331 p~fk~Ya~qVv~NAkaLA~~L~~--~G~~vvsGg--TdnHlvLvDl~~~g~tG~~ae~~Le~agItvNkN~iP~D~---- 402 (490)
T 3ou5_A 331 PMFREYSLQVLKNARAMADALLE--RGYSLVSGG--TDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDR---- 402 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--TTCEEGGGS--CSSSEEEEECGGGTCCHHHHHHHHHHTTEECEEECCTTCC----
T ss_pred HhHHHHHHHHHHHHHHHHHHHHh--CCCeeecCC--CCceEEEEeccccCCCHHHHHHHHHHcCcEECCCCCCCCC----
Confidence 66889999999999999999988 688887422 223444454432 3444444444 68877643322211
Q ss_pred hHHHHHcCCCccccCCeEEEecCC----CCCHHHHHHHHHHHHHh
Q psy15216 1725 SYVLRALGCNDELAHSSIRFTIGR----FTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1725 ~~~~~~~~~~~~~~~~~iRls~~~----~~t~edid~li~~L~~~ 1765 (2602)
.....+.|||+... -..++|++.+.+.|.+.
T Consensus 403 ----------sp~~~SGiRiGTpa~TtRG~~e~dm~~IA~~I~~~ 437 (490)
T 3ou5_A 403 ----------SAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEG 437 (490)
T ss_dssp ----------CSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred ----------CCCCCCeeEECCHHHHhCCCCHHHHHHHHHHHHHH
Confidence 11224789998543 35779999998888763
|
| >2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=5e-16 Score=204.61 Aligned_cols=308 Identities=15% Similarity=0.139 Sum_probs=210.4
Q ss_pred CCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhccccc-----c
Q psy15216 9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFY-----K 83 (2602)
Q Consensus 9 ~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~-----~ 83 (2602)
.+|.+.+++.+.+.... .... .+ ..+...++++++++++| .+++++++|+++|+..++.++.... .
T Consensus 93 ~~p~v~~Ai~~~~~~~~-~~~~-~~-----~~~~~~~l~~~la~~~g--~~~v~~~~sGseA~~~al~~~~~~~~~~~g~ 163 (439)
T 2oat_A 93 CHPKIVNALKSQVDKLT-LTSR-AF-----YNNVLGEYEEYITKLFN--YHKVLPMNTGVEAGETACKLARKWGYTVKGI 163 (439)
T ss_dssp TCHHHHHHHHHHHTTCS-CCCT-TS-----EESSHHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHhcC-cccC-cc-----CCHHHHHHHHHHHHhcC--CCEEEEeCCHHHHHHHHHHHHHHHhhhccCC
Confidence 78999999999886532 1111 11 12346788899999997 4689999999999999998865110 1
Q ss_pred cCC-CEEEEcCCCCcccHH-HHHHHH----hCC-----cEEEEeccCCCCccChHHHHhhc-cCCceEEEEecccCcccc
Q psy15216 84 KRG-KHIITVQTEHKSVLD-SIRKLE----NDG-----FRVTYLKPKNNGLITLSQLEEKI-CSDTILVSVMLVNNEIGV 151 (2602)
Q Consensus 84 ~~g-d~Vlv~~~~~~s~~~-~~~~~~----~~G-----~~v~~v~~~~~~~ld~e~l~~~i-~~~tklv~i~~~~npTG~ 151 (2602)
.+| |+|++.++.|++... ++.... +.+ ..+..++. .|+++|++++ ++++++|++..+++++|.
T Consensus 164 ~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~-----~d~~~le~~l~~~~~~~vi~ep~~~~~G~ 238 (439)
T 2oat_A 164 QKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPY-----NDLPALERALQDPNVAAFMVEPIQGEAGV 238 (439)
T ss_dssp CTTCCEEEEETTCCCCSSHHHHTTCCCHHHHTTSCSCCTTEEEECS-----SCHHHHHHHTTSTTEEEEEECSSBTTTTS
T ss_pred CCCCCeEEEEcCCCCCCCHhHhhcCCChhcccCCCCCCCCeEEeCC-----CCHHHHHHHhCCCCEEEEEEECCCCCCCC
Confidence 356 899999998877543 332211 001 34555553 2899999999 477888888887788998
Q ss_pred cc----cHHHHHHHHHhcCCEEEEecccc-cccc--c--ccCCCCCccEEEeccccccCCCC---cEEEEEecCCCCccc
Q psy15216 152 IQ----PILEIGELCRSKGVIFHCDAAQA-VGKI--D--INIQNYKVDLMSFSAHKIYGPKG---IGALYIRRNPRTRIE 219 (2602)
Q Consensus 152 ~~----~l~~I~~la~~~g~~livD~a~a-~g~~--~--~dl~~~~~D~~~~S~~K~~Gp~G---~G~l~~~~~~~~~l~ 219 (2602)
+. ++++|.++|++||+++|+|++|. ++.. . ++.....+|++ |++|.+|. | +|++++++++++.+.
T Consensus 239 ~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~g~~~~~~~~~~~~Di~--t~sK~l~~-G~~~~G~v~~~~~~~~~l~ 315 (439)
T 2oat_A 239 VVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPDIV--LLGKALSG-GLYPVSAVLCDDDIMLTIK 315 (439)
T ss_dssp BCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGT-TSSCCEEEEECHHHHTTSC
T ss_pred cCCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCcchhHHHhCCCCcEE--EecccccC-CCCCeEEEEECHHHHhccC
Confidence 77 69999999999999999999995 3211 1 12223347876 77896653 4 899999988777765
Q ss_pred ceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhc-cCceEEeCCCCCCCCceEEEEE
Q psy15216 220 AQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMES-IEEIYINGDMNNRIPHNLNISF 298 (2602)
Q Consensus 220 ~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~-~~g~~l~~~~~~~~~~~~~~~~ 298 (2602)
+...+ ...+.+..+.+++.++++.... ++..++..++.+++.+.|.+. ++.+....+ ...+..+.+
T Consensus 316 ~~~~~-------~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~----~g~~~~v~l 382 (439)
T 2oat_A 316 PGEHG-------STYGGNPLGCRVAIAALEVLEE--ENLAENADKLGIILRNELMKLPSDVVTAVRG----KGLLNAIVI 382 (439)
T ss_dssp TTSSC-------CSSTTCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHTTSCTTTEEEEEE----ETTEEEEEE
T ss_pred CCCcc-------cCCCcCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHhcCCCcEEEEe----eeeEEEEEE
Confidence 42211 1224556666667778875543 356788889999999999772 121111111 123444555
Q ss_pred ccc---ChhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 299 NFI---EGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 299 ~~~---~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
+.. +..++...| +||.++++. .+++|++++..++++|+++++++|++.
T Consensus 383 ~~~~~~~~~~l~~~l~~~Gv~v~~~~-----------------------~~~iRi~~~~~~t~e~i~~~l~~l~~~ 435 (439)
T 2oat_A 383 KETKDWDAWKVCLRLRDNGLLAKPTH-----------------------GDIIRFAPPLVIKEDELRESIEIINKT 435 (439)
T ss_dssp CCCSSCCHHHHHHHHHHTTEECCBSS-----------------------SSEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred ecCccHHHHHHHHHHHHCCeEEecCC-----------------------CCEEEEECccCCCHHHHHHHHHHHHHH
Confidence 432 355666666 799887521 278999998889999999999999864
|
| >2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=9.5e-18 Score=224.13 Aligned_cols=330 Identities=17% Similarity=0.153 Sum_probs=205.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhccc
Q psy15216 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAH 80 (2602)
Q Consensus 1 Ld~a~~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~ 80 (2602)
||++++.++ +.+.+++.+.+... .. .|. ..+...++++++++++|. +++++++|+|+|+++++.++.
T Consensus 44 lD~~~~~~~-~~v~~a~~~~l~~~--~~---~y~----~~~~~~~l~~~la~~~~~--~~v~~t~~gt~A~~~al~~~~- 110 (467)
T 2oqx_A 44 IDLLTDSGT-GAVTQSMQAAMMRG--DE---AYS----GSRSYYALAESVKNIFGY--QYTIPTHQGRGAEQIYIPVLI- 110 (467)
T ss_dssp EECSCCSSC-SCCCHHHHHHTTSC--CC---CSS----SCHHHHHHHHHHHHHHCC--SEEEEEC--CCSHHHHHHHHH-
T ss_pred EecccCCCc-HHHHHHHHHHhccC--cc---eec----cCchhHHHHHHHHHHhCc--CcEEEcCCcHHHHHHHHHHHh-
Confidence 466666655 77788888776421 10 111 112467889999999986 589999999999999999987
Q ss_pred ccccC-----C----CEEEEcCCCCcc-cHHHHHHHHhCCcEEEEe------ccC----CCCccChHHHHhhcc----CC
Q psy15216 81 FYKKR-----G----KHIITVQTEHKS-VLDSIRKLENDGFRVTYL------KPK----NNGLITLSQLEEKIC----SD 136 (2602)
Q Consensus 81 ~~~~~-----g----d~Vlv~~~~~~s-~~~~~~~~~~~G~~v~~v------~~~----~~~~ld~e~l~~~i~----~~ 136 (2602)
++ | |+|+++ ..|.. +...+. ..|+.+... +.+ .++.+|+++|+++++ ++
T Consensus 111 ---~~~~~~~G~~~~d~Ii~~-~~h~~t~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~i~~~~~~~ 183 (467)
T 2oqx_A 111 ---KKREQEKGLDRSKMVAFS-NYFFDTTQGHSQ---INGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNN 183 (467)
T ss_dssp ---HHHHHHHCCCTTTCEEEE-SSCCHHHHHHHH---HTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGG
T ss_pred ---ccccccCCCCccceEEec-ccccccchhhhh---ccCcceeeccccccccCCCCCCccCCcCHHHHHHHHHhcCCCc
Confidence 56 7 888877 44533 222222 236665543 112 345789999999997 47
Q ss_pred ceEEEEecccCcc-ccccc---HHHHHHHHHhcCCEEEEeccccc-----------ccccccCCC------CCccEEEec
Q psy15216 137 TILVSVMLVNNEI-GVIQP---ILEIGELCRSKGVIFHCDAAQAV-----------GKIDINIQN------YKVDLMSFS 195 (2602)
Q Consensus 137 tklv~i~~~~npT-G~~~~---l~~I~~la~~~g~~livD~a~a~-----------g~~~~dl~~------~~~D~~~~S 195 (2602)
|++|++++++||+ |.++| +++|.++|++||+++|+|++|+. +....+... ..+|++++|
T Consensus 184 ~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~s 263 (467)
T 2oqx_A 184 VPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMS 263 (467)
T ss_dssp CCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEE
T ss_pred eeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCccHHHHhhhhhccCCeEEEe
Confidence 9999999999998 88766 67899999999999999988766 222222211 236788999
Q ss_pred cccccCCC-CcEEEEEecC-CCC---ccccee-cCCCccccccccCcchhHHHHHHHHHHHHHHhH-HHHHHHHHHHHHH
Q psy15216 196 AHKIYGPK-GIGALYIRRN-PRT---RIEAQI-HGGGHEYGLRSGTLATHQIVGMGEAFRLARIEM-KEELKRILFLQKR 268 (2602)
Q Consensus 196 ~~K~~Gp~-G~G~l~~~~~-~~~---~l~~~~-~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~-~~~~~~~~~l~~~ 268 (2602)
+||.+|++ | |+++.+++ +++ .+++.. .+++. ...++.+...+.++..++ .... +...++..+++++
T Consensus 264 ~sK~~g~~~G-g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~al~~~l---~~~~~~~~~~~~~~~~~~ 336 (467)
T 2oqx_A 264 AKKDAMVPMG-GLLCMKDDSFFDVYTECRTLCVVQEGF---PTYGGLEGGAMERLAVGL---YDGMNLDWLAYRIAQVQY 336 (467)
T ss_dssp SSSTTCCSSC-EEEEECSGGGHHHHHHHHHHHHHTTSS---CCCCCCCHHHHHHHHHHH---HHTTCHHHHHHHHHHHHH
T ss_pred cccccCCCCc-eEEEecChhHHHHHHHHHHhhhccCCc---ccccchhhhHHHHHHHhh---HhhhhHHHHHHHHHHHHH
Confidence 99988766 5 78887765 333 333321 11111 112333333333332222 2222 2344556778888
Q ss_pred HHHHHhhccCceEEeCCCCCCCCceEEEEEc----ccChhH-----HHHHh---CCeEEcccccCCCCCCChHHHHHHcC
Q psy15216 269 LYNGLMESIEEIYINGDMNNRIPHNLNISFN----FIEGES-----LLMAI---KDIAVSSGSACTSASLEPSYVLRALG 336 (2602)
Q Consensus 269 l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~----~~~~~~-----~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g 336 (2602)
+.+.|.+ . ++.+. +.. ..++.+.++ ..+..+ +...| +||.+.++..|..+. .+. .|
T Consensus 337 l~~~L~~-~-~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~~~~~~~~-~~~-----~g 404 (467)
T 2oqx_A 337 LVDGLEE-I-GVVCQ-QAG---GHAAFVDAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGR-DPK-----TG 404 (467)
T ss_dssp HHHHHHH-T-TCCEE-EEC---SSCEEEEHHHHSTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCB-CTT-----TC
T ss_pred HHHHHHH-C-CCeee-cCC---ceEEEEechhhcccCCcccccHHHHHHHHHHhcCceecccccccccc-ccc-----cc
Confidence 9999977 3 66655 322 234445553 223222 24444 599998754432110 000 01
Q ss_pred CCccCCCCeEEEecCCC-CCHHHHHHHHHHHHhh
Q psy15216 337 CNDELAHSSIRFTIGRF-TTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 337 ~~~~~~~~~iRis~~~~-~t~edid~li~~L~~~ 369 (2602)
.......++||++++.. ++++|+++++++|++.
T Consensus 405 ~~~~~~~~~iRl~~~~~~~t~e~i~~~~~~l~~~ 438 (467)
T 2oqx_A 405 KQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHV 438 (467)
T ss_dssp SBCCCSCCEEEECCCTTTSCHHHHHHHHHHHHHH
T ss_pred ccccCccCeEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 11112247899999988 9999999999999864
|
| >3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.6e-16 Score=205.48 Aligned_cols=340 Identities=13% Similarity=0.044 Sum_probs=213.4
Q ss_pred cccHHHHHHHHHhc-CCCccccceeeeeceeeeccCCCCCCCHHHHHHHHHHH-hh--ccCCCCCccchhHHHHHHHHHH
Q psy15216 1366 PSKFIEIKNSLEMT-GFKAESSGIVMRPYTNIVFKDATTPIDPRVVDKMIPYL-RV--QFGNPASRNHIYGWTAEKAIEK 1441 (2602)
Q Consensus 1366 ~~~~~~v~~aL~~~-g~~~~~~ei~~iP~~~v~L~~~~~~~~~~v~eal~~~l-~~--~~~np~~~~~~~~~~~~~~~~~ 1441 (2602)
|+.+.++.+.+++. ..++.+..++..|+. +...+.++.+.++.. .+ +. ...|+.. ....+
T Consensus 13 ~~~i~~~~~~~~~~~~~~~I~l~~G~~~d~-----~~~~~~~~~v~~a~~-~~~~~~~~~~Y~~~----------~G~~~ 76 (405)
T 3k7y_A 13 VDNILKTAREFKEDTCEEKINLSIGVCCND-----DGDLHIFDSVLNADK-LVTENYKEKPYLLG----------NGTED 76 (405)
T ss_dssp CCHHHHHHHHHTTSSCSSCEECSCSSCBCT-----TSSBCCCHHHHHHHH-HHHHHCCCCCCCTT----------SSCHH
T ss_pred CChHHHHHHHHhcCCCcCcEEeeeeeeECC-----CCCCcccHHHHHHHH-HhcCCCCCCCCCCC----------CCcHH
Confidence 44456666666553 234455555532211 112355677888776 43 22 1122221 12467
Q ss_pred HHHHHHHHh-CC-----CCCc--EEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEec
Q psy15216 1442 ARNEVAQLI-YA-----DPRE--IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLK 1513 (2602)
Q Consensus 1442 lr~~ia~~~-g~-----~~~~--iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~ 1513 (2602)
+|+++++++ +. ++++ +++|+|+++|+.+++..+.. +.+ |+|++++|.|+.+...++.+ |++++.++
T Consensus 77 lr~aia~~~~~~~~~~~~~~~i~i~~t~G~~~al~~~~~~l~~--~~~-d~Vlv~~P~y~~~~~~~~~~---g~~~~~v~ 150 (405)
T 3k7y_A 77 FSTLTQNLIFGNNSKYIEDKKICTIQCIGGTGAIFVLLEFLKM--LNV-ETLYVTNPPYINHVNMIESR---GFNLKYIN 150 (405)
T ss_dssp HHHHHHHHHHCSSCTTTTTTCEEEEEEEHHHHHHHHHHHHHHT--TTC-CEEEEESSCCHHHHHHHHTT---TCEEEEEC
T ss_pred HHHHHHHHHcCCCCccccccceEEEEcCchHHHHHHHHHHHHh--cCC-CEEEEeCCCCHhHHHHHHHc---CCeEEEEe
Confidence 888888877 22 3344 58999999999999998871 128 99999999999988776655 99999998
Q ss_pred c-CC-CCCcChhHHHhhcc--CCceEEEEecc-ccccccccC---hHHHHHHhhhcCCEEEEecccccCcc--------c
Q psy15216 1514 P-KN-NGLITLSQLEEKIC--SDTILVSVMLV-NNEIGVIQP---ILEIGELCRSKGVIFHCDAAQAVGKI--------D 1577 (2602)
Q Consensus 1514 ~-~~-~~~id~d~l~~~i~--~~t~lv~l~~~-~n~tG~~~~---l~~I~~ia~~~gi~vivD~a~~~g~~--------~ 1577 (2602)
. ++ ++.+|+++++++++ +++++++++.+ |||||.+++ +++|+++|++||+++|+|++|.--.. +
T Consensus 151 ~~~~~~~~~d~~~l~~~l~~~~~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~ 230 (405)
T 3k7y_A 151 FFDYNLIDINYDLFLNDLRNIPNGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLL 230 (405)
T ss_dssp CEETTTTEECHHHHHHHHHHSCSSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHH
T ss_pred ccccccCCcCHHHHHHHHHhCCCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHH
Confidence 7 33 47799999999997 46778888765 899999999 66788899999999999999752110 0
Q ss_pred c-cC-CCCCccEEEEccccccCCCc--eEEEEEe---cCCCCccccccccCCccccCCCCCcchhHHHHHHHHHHHH---
Q psy15216 1578 I-NI-QNYKVDLMSFSAHKIYGPKG--IGALYIR---RNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLA--- 1647 (2602)
Q Consensus 1578 ~-~l-~~~~~D~~v~S~~K~~gp~G--~G~l~~~---~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~--- 1647 (2602)
+ .+ .....-+++.||+|.||++| +||+++. +++++.+....... .+....+++...+.++..+|...
T Consensus 231 ~~~~~~~~~~~i~~~S~SK~~~l~GlRiG~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~q~~~~~~l~~~~l~ 307 (405)
T 3k7y_A 231 IRKFEEKNIAFSVCQSFSKNMSLYGERAGALHIVCKNQEEKKIVFNNLCFI---VRKFYSSPVIHTNRILCQLLNNQNLK 307 (405)
T ss_dssp HHHHHTTTCCEEEEEECTTTSCCTTTTEEEEEEECSSHHHHHHHHHHHHHH---HHTTTSSCCHHHHHHHHHHHHCHHHH
T ss_pred HHHHHhcCCcEEEEeeCCccCCCccccceEEEEEeCCHHHHHHHHHHHHHH---HhcccCCCcHHHHHHHHHHhCCHHHH
Confidence 1 11 11123477789999998888 8999762 22222222111000 00112234555555555666521
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHh----hcC-C-cEEEeCCCCCCCCceEEEEEecCCcHHHHHhc--CCEEEccccc
Q psy15216 1648 ---RIEMKEELKRILFLQKRLYNGLM----ESI-E-EIYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDIAVSSGSA 1716 (2602)
Q Consensus 1648 ---~~~~~~~~~~~~~l~~~l~~~L~----~~~-~-gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~v~~g~~ 1716 (2602)
...+...+++++++++++.+.|. +.. + ++.+..+ ...+|.+...+. +++..| +||.+.++
T Consensus 308 ~~~~~~l~~~~~~~~~~R~~l~~~L~~~~~~~g~~~~~~~~~p------~gg~f~~~~l~~-~~~~~L~~~gV~v~p~-- 378 (405)
T 3k7y_A 308 LNWIKELSQLSQRITNNRILFFNKLETYQKKYNLNYDWNVYKK------QRGLFSFVPLLA-KIAEHLKTHHIYIINN-- 378 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCGGGGSS------CCSSEEECGGGG-GGTTTTTTTTEECCTT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCccccC------CceEEEecCCCH-HHHHHHHHCCEeecCC--
Confidence 23356677788999999999998 621 1 1222222 222244433332 223333 57776531
Q ss_pred cCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1717 CTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1717 ~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
+ |||++.. +.++|++++++|++.
T Consensus 379 -----------------------~--Ris~a~~-~~~~i~~~~~~i~~~ 401 (405)
T 3k7y_A 379 -----------------------G--RINVSGI-TKNNVDYIADKICLS 401 (405)
T ss_dssp -----------------------S--EEEGGGC-CTTHHHHHHHHHHHH
T ss_pred -----------------------C--eEEEecc-CHHHHHHHHHHHHHH
Confidence 2 9998643 558999999999974
|
| >3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.71 E-value=9.8e-17 Score=207.21 Aligned_cols=253 Identities=14% Similarity=0.092 Sum_probs=179.5
Q ss_pred HHHHHHHHHHHhh--ccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEE--eCCHHHHHHHHHHhhhhhhccCC
Q psy15216 1407 PRVVDKMIPYLRV--QFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIW--TSGATESNNLAIKGAAHFYKKRG 1482 (2602)
Q Consensus 1407 ~~v~eal~~~l~~--~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~--t~gaT~al~~al~~l~~~~~~~g 1482 (2602)
.++++++.+.... .+.+ .. .|.++.. ...++++.+++++|++. .+++ ++|+|+|+..++.+++ +||
T Consensus 47 ~~Vl~a~~~~~~~~~~~~~-~~-gy~Y~~~---g~~~Le~~lA~l~g~e~-alv~p~~~sGt~A~~~al~all----~pG 116 (427)
T 3hvy_A 47 LKVLKAFQEERISESHFTN-SS-GYGYNDI---GRDSLDRVYANIFNTES-AFVRPHFVNGTHAIGAALFGNL----RPN 116 (427)
T ss_dssp HHHHHHHHHTTCCGGGSCC-CC-TTCTTCH---HHHHHHHHHHHHHTCSE-EEEETTCCSHHHHHHHHHHHTC----CTT
T ss_pred HHHHHHHHHHHHHHHhccc-Cc-CCCCCch---hHHHHHHHHHHHhCCCc-eEEeCCCCcHHHHHHHHHHHhc----CCC
Confidence 4677777765432 1222 21 2333322 27888999999999763 2433 7899999999999987 899
Q ss_pred CEEEEcC-CCCcchHHHH--------HHHHhCCcEEEEeccCCCCCcChhHHHhhcc--CCceEEEEec----ccccccc
Q psy15216 1483 KHIITVQ-TEHKSVLDSI--------RKLENDGFRVTYLKPKNNGLITLSQLEEKIC--SDTILVSVML----VNNEIGV 1547 (2602)
Q Consensus 1483 d~Vlv~~-~~~~s~~~~~--------~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~--~~t~lv~l~~----~~n~tG~ 1547 (2602)
|+|++++ +.|+.+...+ ..+...|++++.++. +++.+|+++++++++ ++|++|++++ |+||||.
T Consensus 117 D~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~-~~~~~d~e~l~~~i~~~~~tklV~i~~s~gyp~nptg~ 195 (427)
T 3hvy_A 117 DTMMSICGMPYDTLHDIIGMDDSKKVGSLREYGVKYKMVDL-KDGKVDINTVKEELKKDDSIKLIHIQRSTGYGWRKSLR 195 (427)
T ss_dssp CEEEECSSSCCGGGHHHHTCCTTCCSCCTGGGTCEEEECCC-BTTBCCHHHHHHHHHHCTTEEEEEEESSCCSSSSCCCC
T ss_pred CEEEEeCCCCchhHHHHhccccchhhhHHHHcCCEEEEecC-CCCCcCHHHHHHHhhCCCCCEEEEEECCCCCCCCcccc
Confidence 9999998 9998876544 334455999999998 678899999999999 8999999999 9999999
Q ss_pred ccChHHHHHHhhh--cCCEEEEecccccCcccccCCCCCccEEEEccccccCC----CceEEEEEecCCCCccccccccC
Q psy15216 1548 IQPILEIGELCRS--KGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGP----KGIGALYIRRNPRTRIEAQIHGG 1621 (2602)
Q Consensus 1548 ~~~l~~I~~ia~~--~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K~~gp----~G~G~l~~~~~~~~~l~~~~~g~ 1621 (2602)
+.|+++|.++|++ ||+++++|++|+.+........+++|++++|+||.+|+ .| |+++.++++++.+.......
T Consensus 196 v~dl~~i~~ia~~~~~g~~livD~a~~~~~~~~~p~~~gaDiv~~S~sK~lgg~g~~~G-G~i~~~~~li~~l~~~~~~~ 274 (427)
T 3hvy_A 196 IAEIAEIIKSIREVNENVIVFVDNCYGEFVEEKEPTDVGADIIAGSLIKNIGGGIATTG-GYIAGKEEYVTQATFRVTVP 274 (427)
T ss_dssp HHHHHHHHHHHHHHCSSSEEEEECTTCTTTSSSCGGGGTCSEEEEETTSGGGTTTCCSC-EEEEECHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCccccccCCCCcccCCeEEEECCcccccccccceE-EEEEECHHHHHHHHHHhhcC
Confidence 9999999999999 89999999999877632233346789999999996654 44 99999988777765432100
Q ss_pred CccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeC
Q psy15216 1622 GHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYING 1680 (2602)
Q Consensus 1622 ~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~ 1680 (2602)
+. +...+ ++......+...+.. ...+.++..+.+.++.+.|.+ .++.+.+
T Consensus 275 ~~--g~~~~-~~~~~a~~~~~gl~~----~~~r~~~~~~~a~~la~~L~~--~g~~V~p 324 (427)
T 3hvy_A 275 GI--GGECG-STFGVMRSLYEGLFM----APHVTIEAVKGAVFCARIMEL--AGFDVLP 324 (427)
T ss_dssp TT--GGGCC-CCTTCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH--TTCEEES
T ss_pred Cc--ccccC-CCHHHHHHHHHhHhH----HHHHHHHHHHHHHHHHHHHHh--CCCeecC
Confidence 00 00111 212111222233332 345667778888888888887 3445543
|
| >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.71 E-value=6.2e-16 Score=201.70 Aligned_cols=309 Identities=17% Similarity=0.180 Sum_probs=206.9
Q ss_pred CCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhc---cC
Q psy15216 1405 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYK---KR 1481 (2602)
Q Consensus 1405 ~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~---~~ 1481 (2602)
.++.+.+++.+.++.....+.. + ......+++++++++++ +++++|++|+++|+..++..+..... .+
T Consensus 53 ~~p~v~~a~~~~~~~~~~~~~~--~-----~~~~~~~l~~~la~~~~--~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~ 123 (395)
T 3nx3_A 53 NHAKFNAKIKAQVDKLLHTSNL--Y-----YNENIAAAAKNLAKASA--LERVFFTNSGTESIEGAMKTARKYAFNKGVK 123 (395)
T ss_dssp SCHHHHHHHHHHHTTCSCCCTT--S-----BCHHHHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHHHHHHHHHHTTCT
T ss_pred CCHHHHHHHHHHHHhccccccc--c-----CCHHHHHHHHHHHHhcC--CCeEEEeCCHHHHHHHHHHHHHHHhhccCCC
Confidence 4789999999988753221111 1 12457889999999998 56899999999999999987752100 35
Q ss_pred CCEEEEcCCCCcchHHHHHHHH----------hCCcEEEEeccCCCCCcChhHHHhhccCCceEEEEeccccccccccC-
Q psy15216 1482 GKHIITVQTEHKSVLDSIRKLE----------NDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP- 1550 (2602)
Q Consensus 1482 gd~Vlv~~~~~~s~~~~~~~~~----------~~G~~v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~- 1550 (2602)
+++|+++++.|+++......+. ..+..+..++. .|+++|++++++++++|++.+++|++|.+.|
T Consensus 124 ~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~l~~~~~~v~~~~~~~~~G~~~~~ 198 (395)
T 3nx3_A 124 GGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKY-----NDISSVEKLVNEKTCAIILESVQGEGGINPAN 198 (395)
T ss_dssp TCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECT-----TCHHHHHTTCCTTEEEEEEESEECTTSCEECC
T ss_pred CCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCC-----CCHHHHHHhccCCeEEEEEeCccCCCCcccCC
Confidence 7999999999987653332221 11234445543 2799999999999999999999999999988
Q ss_pred ---hHHHHHHhhhcCCEEEEecccc-cCcc----cccCCCCCccEEEEccccccCC-CceEEEEEecCC-CCcccccccc
Q psy15216 1551 ---ILEIGELCRSKGVIFHCDAAQA-VGKI----DINIQNYKVDLMSFSAHKIYGP-KGIGALYIRRNP-RTRIEAQIHG 1620 (2602)
Q Consensus 1551 ---l~~I~~ia~~~gi~vivD~a~~-~g~~----~~~l~~~~~D~~v~S~~K~~gp-~G~G~l~~~~~~-~~~l~~~~~g 1620 (2602)
+++|.++|++||+++|+|++|+ +|.. ..+.....+|+++ ++|.+++ .++|++++++++ .+.+.+...+
T Consensus 199 ~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~~d~~t--~sK~~~~G~~~G~~~~~~~~~~~~~~~~~~~ 276 (395)
T 3nx3_A 199 KDFYKALRKLCDEKDILLIADEIQCGMGRSGKFFAYEHAQILPDIMT--SAKALGCGLSVGAFVINQKVASNSLEAGDHG 276 (395)
T ss_dssp HHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEE--ECGGGTTTSCCEEEEECHHHHHHHSCTTCCS
T ss_pred HHHHHHHHHHHHHcCCEEEEEecccCCCcCCcchhHHhcCCCCCEEE--ecccccCCCceEEEEEchhhhhhhcCCcccC
Confidence 9999999999999999999987 4321 1122233467664 5694432 248999999876 5555543211
Q ss_pred CCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cCCcEEEeCCCCCCCCceEEEEEecC
Q psy15216 1621 GGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLME---SIEEIYINGDMNNRIPHNLNISFNFI 1697 (2602)
Q Consensus 1621 ~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~---~~~gl~i~~~~~~~~~~~~~~~~~~~ 1697 (2602)
+ ..+.+...+.+..++++.... +...++.+++.+++++.|.+ ..+.+..... ...+..+.++..
T Consensus 277 ~-------~~~~~~~~~~aa~aal~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~g~~~~~~~~~~ 343 (395)
T 3nx3_A 277 S-------TYGGNPLVCAGVNAVFEIFKE--EKILENVNKLTPYLEQSLDELINEFDFCKKRKG----LGFMQGLSLDKS 343 (395)
T ss_dssp S-------CBSCCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEE----ETTEEEEEECTT
T ss_pred C-------CCCCCHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEe----EEEEEEEEeCCc
Confidence 1 123455666666677775432 23344444555555555443 1344433211 123444555432
Q ss_pred -CcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1698 -EGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1698 -~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
+...+...| +||.++++. .+++|++++...|++++++++++|++.
T Consensus 344 ~~~~~~~~~l~~~Gi~v~~~~-----------------------~~~iRi~~~~~~t~e~i~~~l~~l~~~ 391 (395)
T 3nx3_A 344 VKVAKVIQKCQENALLLISCG-----------------------ENDLRFLPPLILQKEHIDEMSEKLRKA 391 (395)
T ss_dssp SCHHHHHHHHHHTTEECEEET-----------------------TTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHCCCEEecCC-----------------------CCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 455666665 799988653 178999999999999999999999873
|
| >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-15 Score=201.00 Aligned_cols=308 Identities=15% Similarity=0.127 Sum_probs=202.3
Q ss_pred CCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhh-----c
Q psy15216 1405 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFY-----K 1479 (2602)
Q Consensus 1405 ~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~-----~ 1479 (2602)
.++.+.+++.+.++... +.+.+ + ..+...++++++++++| .++++|++|+++|+..++..+.... +
T Consensus 82 ~~p~v~~ai~~~~~~~~-~~~~~-~-----~~~~~~~l~~~la~~~g--~~~v~~~~sGseA~~~al~~a~~~~~~~~g~ 152 (433)
T 1z7d_A 82 CHPNILNAMINQAKNLT-ICSRA-F-----FSVPLGICERYLTNLLG--YDKVLMMNTGAEANETAYKLCRKWGYEVKKI 152 (433)
T ss_dssp TCHHHHHHHHHHHTTCS-CCCTT-S-----EEHHHHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHHHHHHHHHHTSCC
T ss_pred CCHHHHHHHHHHHHhCC-CccCC-c-----CCHHHHHHHHHHHhhcC--CCeEEEeCCHHHHHHHHHHHHHHHhhhccCC
Confidence 67899999999887632 22211 1 12456788899999998 4689999999999999998764110 1
Q ss_pred cCC-CEEEEcCCCCcchHHH-HHHHHh----CC-----cEEEEeccCCCCCcChhHHHhhc-cCCceEEEEecccccccc
Q psy15216 1480 KRG-KHIITVQTEHKSVLDS-IRKLEN----DG-----FRVTYLKPKNNGLITLSQLEEKI-CSDTILVSVMLVNNEIGV 1547 (2602)
Q Consensus 1480 ~~g-d~Vlv~~~~~~s~~~~-~~~~~~----~G-----~~v~~v~~~~~~~id~d~l~~~i-~~~t~lv~l~~~~n~tG~ 1547 (2602)
++| ++|+++++.|++.... +..... .+ ..+..++. .|+++|++++ ++++++|+++++++++|.
T Consensus 153 ~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~-----~d~~~le~~l~~~~~~~vi~ep~~~~~G~ 227 (433)
T 1z7d_A 153 PENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPY-----DDLEALEEELKDPNVCAFIVEPIQGEAGV 227 (433)
T ss_dssp CTTCCEEEEETTC--------------------------CEEEECT-----TCHHHHHHHHTSTTEEEEEECSSBSTTTS
T ss_pred CCCCCeEEEEeCCcCCcchhhhcccCCccccccCCCCCCCeEEeCC-----CCHHHHHHHhCCCCEEEEEEECCCCCCCc
Confidence 367 9999999998875432 222210 01 23344443 3899999999 678899988888888998
Q ss_pred cc----ChHHHHHHhhhcCCEEEEecccc-cCcc----cccCCCCCccEEEEccccccCCCc---eEEEEEecCCCCccc
Q psy15216 1548 IQ----PILEIGELCRSKGVIFHCDAAQA-VGKI----DINIQNYKVDLMSFSAHKIYGPKG---IGALYIRRNPRTRIE 1615 (2602)
Q Consensus 1548 ~~----~l~~I~~ia~~~gi~vivD~a~~-~g~~----~~~l~~~~~D~~v~S~~K~~gp~G---~G~l~~~~~~~~~l~ 1615 (2602)
+. ++++|.++|++||+++|+|++|+ +|.. .++.....+|++ |++|.+|+ | +|++++++++++.+.
T Consensus 228 ~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~g~~~~~~~~~~~~di~--t~sK~l~~-G~~~~G~v~~~~~~~~~l~ 304 (433)
T 1z7d_A 228 IVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYNVKPDVI--LLGKALSG-GHYPISAVLANDDIMLVIK 304 (433)
T ss_dssp BCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGT-TSSCCEEEEECHHHHTTCC
T ss_pred cCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcCCcchhhHhcCCCCCEE--EECccccC-CCCCeEEEEECHHHHhhhc
Confidence 76 59999999999999999999996 3211 112223357876 67796652 4 899999987766665
Q ss_pred cccccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---CCcEEEeCCCCCCCCceEEE
Q psy15216 1616 AQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMES---IEEIYINGDMNNRIPHNLNI 1692 (2602)
Q Consensus 1616 ~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~---~~gl~i~~~~~~~~~~~~~~ 1692 (2602)
+... .. ..+.+...+++..++|+.+.. ++..++..++.+++.+.|.+. .+.+..... ...+..+
T Consensus 305 ~~~~------~~-t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~----~g~~~~i 371 (433)
T 1z7d_A 305 PGEH------GS-TYGGNPLAASICVEALNVLIN--EKLCENAEKLGGPFLENLKRELKDSKIVRDVRG----KGLLCAI 371 (433)
T ss_dssp TTCC------CC-TTTTCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEE----ETTEEEE
T ss_pred cccc------cc-cCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEe----eeeEEEE
Confidence 4211 11 123455666666677775543 256677778888888888652 233222111 1234444
Q ss_pred EEecC--CcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1693 SFNFI--EGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1693 ~~~~~--~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
.++.. +..++...| +||.++++. .+++|++++..+|++|+++++++|++.
T Consensus 372 ~~~~~~~~~~~~~~~l~~~Gv~v~~~~-----------------------~~~iRi~~~~~~t~e~i~~~l~~l~~~ 425 (433)
T 1z7d_A 372 EFKNELVNVLDICLKLKENGLITRDVH-----------------------DKTIRLTPPLCITKEQLDECTEIIVKT 425 (433)
T ss_dssp EECTTTCCHHHHHHHHHHTTEECCEET-----------------------TTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred EEccChhHHHHHHHHHHHCCeEEecCC-----------------------CCEEEEECCcCCCHHHHHHHHHHHHHH
Confidence 55432 345566655 799887541 178999999889999999999999874
|
| >3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.4e-16 Score=206.19 Aligned_cols=280 Identities=14% Similarity=0.071 Sum_probs=184.3
Q ss_pred HHHHHHHHHHHh-CC-----CCCc--EEEeCCHHHHHHHHHHhccccccc--CCCEEEEcCCCCcccHHHHHHHHhCCcE
Q psy15216 43 IEKARNEVAQLI-YA-----DPRE--IIWTSGATESNNLAIKGAAHFYKK--RGKHIITVQTEHKSVLDSIRKLENDGFR 112 (2602)
Q Consensus 43 ~~~~r~~lA~~~-g~-----~~~~--Iv~t~g~T~al~~~~~~l~~~~~~--~gd~Vlv~~~~~~s~~~~~~~~~~~G~~ 112 (2602)
..++|+++++++ +. ++++ ++.|.|+++|+.+++.++. . | |+|++++|.|+.+...++.+ |++
T Consensus 74 ~~~lr~aia~~~~~~~~~~~~~~~i~i~~t~G~~~al~~~~~~l~----~~~~-d~Vlv~~P~y~~~~~~~~~~---g~~ 145 (405)
T 3k7y_A 74 TEDFSTLTQNLIFGNNSKYIEDKKICTIQCIGGTGAIFVLLEFLK----MLNV-ETLYVTNPPYINHVNMIESR---GFN 145 (405)
T ss_dssp CHHHHHHHHHHHHCSSCTTTTTTCEEEEEEEHHHHHHHHHHHHHH----TTTC-CEEEEESSCCHHHHHHHHTT---TCE
T ss_pred cHHHHHHHHHHHcCCCCccccccceEEEEcCchHHHHHHHHHHHH----hcCC-CEEEEeCCCCHhHHHHHHHc---CCe
Confidence 456777777776 21 3344 6999999999999999887 5 7 99999999999988777655 999
Q ss_pred EEEecc-CC-CCccChHHHHhhcc--CCceEEEEecc-cCccccccc---HHHHHHHHHhcCCEEEEecccccccc----
Q psy15216 113 VTYLKP-KN-NGLITLSQLEEKIC--SDTILVSVMLV-NNEIGVIQP---ILEIGELCRSKGVIFHCDAAQAVGKI---- 180 (2602)
Q Consensus 113 v~~v~~-~~-~~~ld~e~l~~~i~--~~tklv~i~~~-~npTG~~~~---l~~I~~la~~~g~~livD~a~a~g~~---- 180 (2602)
++.+++ ++ ++.+|++++++.++ +++++++++.+ |||||.+++ +++|+++|++|++++|+|++|..-..
T Consensus 146 ~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~ 225 (405)
T 3k7y_A 146 LKYINFFDYNLIDINYDLFLNDLRNIPNGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLE 225 (405)
T ss_dssp EEEECCEETTTTEECHHHHHHHHHHSCSSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTT
T ss_pred EEEEeccccccCCcCHHHHHHHHHhCCCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEecCcccccCCCcc
Confidence 999987 33 57899999999996 45778888765 899999999 45678889999999999999852111
Q ss_pred ----cc-cC-CCCCccEEEeccccccCCCC--cEEEEE---ecCCCCcccceecCCCccccccccCcchhHHHHHHHHHH
Q psy15216 181 ----DI-NI-QNYKVDLMSFSAHKIYGPKG--IGALYI---RRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFR 249 (2602)
Q Consensus 181 ----~~-dl-~~~~~D~~~~S~~K~~Gp~G--~G~l~~---~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~ 249 (2602)
++ .+ .....-+++.|+||.||++| +||+++ ++++++.+...+.. ..+....+++..+..++..++.
T Consensus 226 ~~~~~~~~~~~~~~~~i~~~S~SK~~~l~GlRiG~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~q~~~~~~l~ 302 (405)
T 3k7y_A 226 EDVLLIRKFEEKNIAFSVCQSFSKNMSLYGERAGALHIVCKNQEEKKIVFNNLCF---IVRKFYSSPVIHTNRILCQLLN 302 (405)
T ss_dssp GGGHHHHHHHTTTCCEEEEEECTTTSCCTTTTEEEEEEECSSHHHHHHHHHHHHH---HHHTTTSSCCHHHHHHHHHHHH
T ss_pred cchHHHHHHHhcCCcEEEEeeCCccCCCccccceEEEEEeCCHHHHHHHHHHHHH---HHhcccCCCcHHHHHHHHHHhC
Confidence 01 11 11123477889999999888 899875 23333223211100 0001122345555555555665
Q ss_pred H---HH---HhHHHHHHHHHHHHHHHHHHHh----hccC---ceEEeCCCCCCCCceEEEEEcccChhHHHHHh--CCeE
Q psy15216 250 L---AR---IEMKEELKRILFLQKRLYNGLM----ESIE---EIYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDIA 314 (2602)
Q Consensus 250 ~---~~---~~~~~~~~~~~~l~~~l~~~L~----~~~~---g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~ 314 (2602)
. .. ..+...+++++++++++.+.|. + .. ++....+.. +.++++. .+. +++..| +||.
T Consensus 303 ~~~l~~~~~~~l~~~~~~~~~~R~~l~~~L~~~~~~-~g~~~~~~~~~p~g-----g~f~~~~-l~~-~~~~~L~~~gV~ 374 (405)
T 3k7y_A 303 NQNLKLNWIKELSQLSQRITNNRILFFNKLETYQKK-YNLNYDWNVYKKQR-----GLFSFVP-LLA-KIAEHLKTHHIY 374 (405)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG-GTCCCCGGGGSSCC-----SSEEECG-GGG-GGTTTTTTTTEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-cCCCCCCccccCCc-----eEEEecC-CCH-HHHHHHHHCCEe
Confidence 2 11 2345667778999999999998 5 31 133332221 2223332 222 233333 5666
Q ss_pred EcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 315 VSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 315 v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
+.++ + |||++. .+++++++++++|++.
T Consensus 375 v~p~-------------------------~--Ris~a~-~~~~~i~~~~~~i~~~ 401 (405)
T 3k7y_A 375 IINN-------------------------G--RINVSG-ITKNNVDYIADKICLS 401 (405)
T ss_dssp CCTT-------------------------S--EEEGGG-CCTTHHHHHHHHHHHH
T ss_pred ecCC-------------------------C--eEEEec-cCHHHHHHHHHHHHHH
Confidence 6531 2 999964 3568899999999974
|
| >2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=4.7e-17 Score=217.44 Aligned_cols=353 Identities=16% Similarity=0.125 Sum_probs=213.7
Q ss_pred HHHHHHHHHhcCCCccccceeeeeceeeeccCC-CCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHH
Q psy15216 1369 FIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDA-TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVA 1447 (2602)
Q Consensus 1369 ~~~v~~aL~~~g~~~~~~ei~~iP~~~v~L~~~-~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia 1447 (2602)
+......|+..|..+.....+ ..|+|.. +.+. +.+.+++.+.+... .. .|.. .....++|++++
T Consensus 20 ~~~~~~~~~~~g~~~~~~~~~-----~~ylD~~~~~~~-~~v~~a~~~~l~~~--~~---~y~~----~~~~~~l~~~la 84 (467)
T 2oqx_A 20 RAYREEAIIKSGMNPFLLDSE-----DVFIDLLTDSGT-GAVTQSMQAAMMRG--DE---AYSG----SRSYYALAESVK 84 (467)
T ss_dssp HHHHHHHHHHTTSCGGGSCGG-----GCSEECSCCSSC-SCCCHHHHHHTTSC--CC---CSSS----CHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCceeccCC-----CeeEecccCCCc-HHHHHHHHHHhccC--cc---eecc----CchhHHHHHHHH
Confidence 344456777777766544333 2344432 2222 67777887776431 11 1111 123568899999
Q ss_pred HHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccC-----C----CEEEEcCCCCcc-hHHHHHHHHhCCcEEEEec----
Q psy15216 1448 QLIYADPREIIWTSGATESNNLAIKGAAHFYKKR-----G----KHIITVQTEHKS-VLDSIRKLENDGFRVTYLK---- 1513 (2602)
Q Consensus 1448 ~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~-----g----d~Vlv~~~~~~s-~~~~~~~~~~~G~~v~~v~---- 1513 (2602)
++++. ++++||+|+|+|++.++.++. ++ | |+|+++ ..|.. +..... ..|+.+....
T Consensus 85 ~~~~~--~~v~~t~~gt~A~~~al~~~~----~~~~~~~G~~~~d~Ii~~-~~h~~t~~~~~~---~~~~~~~~~~~~~~ 154 (467)
T 2oqx_A 85 NIFGY--QYTIPTHQGRGAEQIYIPVLI----KKREQEKGLDRSKMVAFS-NYFFDTTQGHSQ---INGCTVRNVYIKEA 154 (467)
T ss_dssp HHHCC--SEEEEEC--CCSHHHHHHHHH----HHHHHHHCCCTTTCEEEE-SSCCHHHHHHHH---HTTCEEEECBCTTT
T ss_pred HHhCc--CcEEEcCCcHHHHHHHHHHHh----ccccccCCCCccceEEec-ccccccchhhhh---ccCcceeecccccc
Confidence 99986 589999999999999999987 55 7 888877 44533 333332 2356655431
Q ss_pred --cC----CCCCcChhHHHhhcc----CCceEEEEecccccc-ccccC---hHHHHHHhhhcCCEEEEeccccc------
Q psy15216 1514 --PK----NNGLITLSQLEEKIC----SDTILVSVMLVNNEI-GVIQP---ILEIGELCRSKGVIFHCDAAQAV------ 1573 (2602)
Q Consensus 1514 --~~----~~~~id~d~l~~~i~----~~t~lv~l~~~~n~t-G~~~~---l~~I~~ia~~~gi~vivD~a~~~------ 1573 (2602)
.+ .++.+|+++|+++|+ ++|++|++++++||+ |.++| +++|.++|++||+++|+|++|+.
T Consensus 155 ~~~~~~~~~~~~~d~~~Le~~i~~~~~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~ 234 (467)
T 2oqx_A 155 FDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFI 234 (467)
T ss_dssp TCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHH
T ss_pred ccCCCCCCccCCcCHHHHHHHHHhcCCCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhc
Confidence 22 245689999999998 479999999999998 88766 77999999999999999988766
Q ss_pred -----CcccccCCC------CCccEEEEccccccCCC-ceEEEEEecC-CCC---cccccc-ccCCccccCCCCCcchhH
Q psy15216 1574 -----GKIDINIQN------YKVDLMSFSAHKIYGPK-GIGALYIRRN-PRT---RIEAQI-HGGGHEYGLRSGTLATHQ 1636 (2602)
Q Consensus 1574 -----g~~~~~l~~------~~~D~~v~S~~K~~gp~-G~G~l~~~~~-~~~---~l~~~~-~g~~~~~~~~~gt~~~~~ 1636 (2602)
+....+... ..+|++++|+||.+|++ | |+++.+++ +++ .+.+.. .+++. ...++.+...
T Consensus 235 ~~~~~~~~g~~~~~~~~~~~~~~d~~~~s~sK~~g~~~G-g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 310 (467)
T 2oqx_A 235 KQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPMG-GLLCMKDDSFFDVYTECRTLCVVQEGF---PTYGGLEGGA 310 (467)
T ss_dssp HHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCCSSC-EEEEECSGGGHHHHHHHHHHHHHTTSS---CCCCCCCHHH
T ss_pred ccccccccCccHHHHhhhhhccCCeEEEecccccCCCCc-eEEEecChhHHHHHHHHHHhhhccCCc---ccccchhhhH
Confidence 222222111 23678899999977755 5 78887765 333 333321 11111 1223444444
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEe----cCCcHH-----HHHhc
Q psy15216 1637 IVGMGEAFRLARIEM-KEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN----FIEGES-----LLMAI 1706 (2602)
Q Consensus 1637 ~~al~~aL~~~~~~~-~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~----~~~~~~-----~~~~L 1706 (2602)
+.++..++. ..+ +...++..++++++.+.|.+ . ++.+. +.. ..+..+.++ ..+..+ +...|
T Consensus 311 ~~al~~~l~---~~~~~~~~~~~~~~~~~l~~~L~~-~-~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~L 381 (467)
T 2oqx_A 311 MERLAVGLY---DGMNLDWLAYRIAQVQYLVDGLEE-I-GVVCQ-QAG---GHAAFVDAGKLLPHIPADQFPAQALACEL 381 (467)
T ss_dssp HHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHHHH-T-TCCEE-EEC---SSCEEEEHHHHSTTSCGGGCHHHHHHHHH
T ss_pred HHHHHHhhH---hhhhHHHHHHHHHHHHHHHHHHHH-C-CCeee-cCC---ceEEEEechhhcccCCcccccHHHHHHHH
Confidence 444433322 112 23445556778888899987 3 55554 321 233444442 123222 24443
Q ss_pred ---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCC-CCHHHHHHHHHHHHHh
Q psy15216 1707 ---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRF-TTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1707 ---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~-~t~edid~li~~L~~~ 1765 (2602)
+||.+.++..|..+. .++ .+.......+++|++++.. +|.+++++++++|++.
T Consensus 382 ~~~~gv~~~~~~~~~~~~-~~~-----~g~~~~~~~~~iRl~~~~~~~t~e~i~~~~~~l~~~ 438 (467)
T 2oqx_A 382 YKVAGIRAVEIGSFLLGR-DPK-----TGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHV 438 (467)
T ss_dssp HHHHCEECEEESHHHHCB-CTT-----TCSBCCCSCCEEEECCCTTTSCHHHHHHHHHHHHHH
T ss_pred HHhcCceecccccccccc-ccc-----ccccccCccCeEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 699998754331110 000 0111112237899999998 9999999999999974
|
| >1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=5.2e-16 Score=205.09 Aligned_cols=320 Identities=14% Similarity=0.104 Sum_probs=207.6
Q ss_pred CCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCE
Q psy15216 1405 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKH 1484 (2602)
Q Consensus 1405 ~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~ 1484 (2602)
.++.+.+++.+.++... +...+ +. .....+++++++++++.++++|+||+|+++|+..++..+.. ...+++
T Consensus 60 ~~p~v~~a~~~~~~~~~-~~~~~-~~-----~~~~~~l~~~la~~~~~~~~~v~~~~gg~ea~~~a~~~~~~--~~~~~~ 130 (433)
T 1zod_A 60 CHPEIVSVIGEYAGKLD-HLFSE-ML-----SRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKL--VTGKYE 130 (433)
T ss_dssp TCHHHHHHHHHHHHHCC-CCCTT-CC-----CHHHHHHHHHHHHHSCTTCCEEEEESCHHHHHHHHHHHHHH--HHTCCE
T ss_pred CCHHHHHHHHHHHHhCc-ccccc-cC-----CHHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHH--hhCCCe
Confidence 47899999999887632 11111 11 13467888999999998888999999999999999987541 124689
Q ss_pred EEEcCCCCcchHHHHHHHHh---------CCcEEEEeccCCC----C--------CcChhHHHhhcc----CCceEEEEe
Q psy15216 1485 IITVQTEHKSVLDSIRKLEN---------DGFRVTYLKPKNN----G--------LITLSQLEEKIC----SDTILVSVM 1539 (2602)
Q Consensus 1485 Vlv~~~~~~s~~~~~~~~~~---------~G~~v~~v~~~~~----~--------~id~d~l~~~i~----~~t~lv~l~ 1539 (2602)
|++.++.|++.......+.. ....+..++.+.. + .+|+++|+++++ +++++|+++
T Consensus 131 vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~ 210 (433)
T 1zod_A 131 IVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAE 210 (433)
T ss_dssp EEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEEEC
T ss_pred EEEECCCcCCCChhHHhhcCCccccccCCCCCCceEecCCcccccccCCchhhhHHHHHHHHHHHHHhcCCCCeEEEEEc
Confidence 99999988775443322210 0012344443211 1 246899999997 567788777
Q ss_pred ccccccccccC----hHHHHHHhhhcCCEEEEecccc-cCccc----ccCCCCCccEEEEccccccCC-CceEEEEEecC
Q psy15216 1540 LVNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKID----INIQNYKVDLMSFSAHKIYGP-KGIGALYIRRN 1609 (2602)
Q Consensus 1540 ~~~n~tG~~~~----l~~I~~ia~~~gi~vivD~a~~-~g~~~----~~l~~~~~D~~v~S~~K~~gp-~G~G~l~~~~~ 1609 (2602)
.++|+||...| +++|.++|++||+++|+|++|+ ++... ++.....+|++ |++|.+|+ -.+|+++++++
T Consensus 211 p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~g~~g~~~~~~~~~~~~di~--s~sK~~~~G~~ig~~~~~~~ 288 (433)
T 1zod_A 211 PILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGVTPDIL--TLSKTLGAGLPLAAIVTSAA 288 (433)
T ss_dssp SEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEE--EECHHHHTTSSCEEEEECHH
T ss_pred cccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCchHhHHhhcCCCCCEE--EecccccCCCCeeEEEEhHH
Confidence 77788998766 9999999999999999999998 54221 12223346765 67795543 23899999987
Q ss_pred CCCccccccccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---CCcEEEeCCCCCCC
Q psy15216 1610 PRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMES---IEEIYINGDMNNRI 1686 (2602)
Q Consensus 1610 ~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~---~~gl~i~~~~~~~~ 1686 (2602)
+++.+.+... ... ...+.+...+.+..++++.... +...++..+++++++++|.+. .+.+....+ .
T Consensus 289 ~~~~~~~~~~----~~~-~t~~~~~~~~~a~~aal~~~~~--~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~-~--- 357 (433)
T 1zod_A 289 IEERAHELGY----LFY-TTHVSDPLPAAVGLRVLDVVQR--DGLVARANVMGDRLRRGLLDLMERFDCIGDVRG-R--- 357 (433)
T ss_dssp HHHHHHHTTC----CCC-CTTTTCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEE-E---
T ss_pred HHHhhccCCC----CCC-CCCCcCHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEE-E---
Confidence 6655543100 000 1223456666666678875543 245667777777777777652 344432211 1
Q ss_pred CceEEEEEecC---------CcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHH
Q psy15216 1687 PHNLNISFNFI---------EGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEI 1755 (2602)
Q Consensus 1687 ~~~~~~~~~~~---------~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edi 1755 (2602)
..+..+.++.. ....+...| +||.+.++..+.. .+++||+++...|++++
T Consensus 358 g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~-------------------~~~lRi~~~~~~t~~~i 418 (433)
T 1zod_A 358 GLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIVQLPGM-------------------GGVFRIAPPLTVSEDEI 418 (433)
T ss_dssp TTEEEEEEEEETTTTEECTTHHHHHHHHHHHTTEECCEECCTTS-------------------CCEEEECCCTTCCHHHH
T ss_pred EEEEEEEEecCccccCCChHHHHHHHHHHHHCCCeEeccCCCCC-------------------CCEEEEECCcCCCHHHH
Confidence 22333444421 134555555 7999988764321 27899999988999999
Q ss_pred HHHHHHHHHh
Q psy15216 1756 DFTIKLLKMK 1765 (2602)
Q Consensus 1756 d~li~~L~~~ 1765 (2602)
++++++|++.
T Consensus 419 ~~~l~~l~~~ 428 (433)
T 1zod_A 419 DLGLSLLGQA 428 (433)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999873
|
| >3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.5e-16 Score=207.61 Aligned_cols=321 Identities=13% Similarity=0.080 Sum_probs=208.5
Q ss_pred CCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhc----c
Q psy15216 1405 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYK----K 1480 (2602)
Q Consensus 1405 ~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~----~ 1480 (2602)
.++.+.+++.+.++... .+. .+.+ ......++++.++++++.++++|+||+|+++|++.++.++..... .
T Consensus 67 ~~~~v~~a~~~~~~~~~--~~~-~~~~---~~~~~~~l~~~la~~~~~~~~~v~~~~ggsea~~~al~~~~~~~~~~g~~ 140 (449)
T 3a8u_X 67 TRKEIQEAVAKQLSTLD--YSP-GFQY---GHPLSFQLAEKITDLTPGNLNHVFFTDSGSECALTAVKMVRAYWRLKGQA 140 (449)
T ss_dssp SCHHHHHHHHHHTTTCS--CCC-SSSC---CCHHHHHHHHHHHTTSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCT
T ss_pred CCHHHHHHHHHHHHhCC--Ccc-cccc---CCHHHHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHHHHHHhcCCC
Confidence 47899999999886532 111 0011 123467889999999987788999999999999999988762100 1
Q ss_pred CCCEEEEcCCCCcchHH-HHHHHH----hCC-----cEEEEeccCCCC-----CcC--------hhHHHhhcc----CCc
Q psy15216 1481 RGKHIITVQTEHKSVLD-SIRKLE----NDG-----FRVTYLKPKNNG-----LIT--------LSQLEEKIC----SDT 1533 (2602)
Q Consensus 1481 ~gd~Vlv~~~~~~s~~~-~~~~~~----~~G-----~~v~~v~~~~~~-----~id--------~d~l~~~i~----~~t 1533 (2602)
+||+|++.++.|++... .+.... +.+ ..+..++.+..+ .+| +++|+++++ +++
T Consensus 141 ~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~ 220 (449)
T 3a8u_X 141 TKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADELLKLIELHDASNI 220 (449)
T ss_dssp TCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCCCCGGGTTCSSSCSSSHHHHHHHHHHHHHHHCGGGE
T ss_pred CCCEEEEECCCcCCCChhhhhccCChhhccccCCCCCCCeEecCCccccCccccCChHHHHHHHHHHHHHHHHhcCCCCE
Confidence 67999999999887643 333221 000 123445433211 146 999999997 567
Q ss_pred eEEEEeccccccccccC----hHHHHHHhhhcCCEEEEeccc-ccCccc----ccCCCCCccEEEEccccccCCCc---e
Q psy15216 1534 ILVSVMLVNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQ-AVGKID----INIQNYKVDLMSFSAHKIYGPKG---I 1601 (2602)
Q Consensus 1534 ~lv~l~~~~n~tG~~~~----l~~I~~ia~~~gi~vivD~a~-~~g~~~----~~l~~~~~D~~v~S~~K~~gp~G---~ 1601 (2602)
++|++++.+|+||.+.| +++|.++|++||+++|+|++| .+|... ++.....+|++ |++|.+++ | +
T Consensus 221 ~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~~di~--s~sK~l~~-G~~~~ 297 (449)
T 3a8u_X 221 AAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTGSMFGADSFGVTPDLM--CIAKQVTN-GAIPM 297 (449)
T ss_dssp EEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE--EECGGGGT-TSSCC
T ss_pred EEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCccccCcchhhhhcCCCCCEE--EEcccccC-CCCce
Confidence 78888777788999888 999999999999999999999 465321 12222346866 66796554 4 8
Q ss_pred EEEEEecCCCCccccccccCCccccC---CCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCcE
Q psy15216 1602 GALYIRRNPRTRIEAQIHGGGHEYGL---RSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMES--IEEI 1676 (2602)
Q Consensus 1602 G~l~~~~~~~~~l~~~~~g~~~~~~~---~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~--~~gl 1676 (2602)
|++++++++++.+.+...+ .....+ ...+.+...++++.++|+.... +...++.+++.+++++.|.+. ++.+
T Consensus 298 G~~~~~~~~~~~l~~~~~~-~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~ 374 (449)
T 3a8u_X 298 GAVIASTEIYQTFMNQPTP-EYAVEFPHGYTYSAHPVACAAGLAALCLLQK--ENLVQSVAEVAPHFEKALHGIKGAKNV 374 (449)
T ss_dssp EEEEEEHHHHHHHHTCSSC-TTSCSSCCCCTTTTCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHTTTTSTTE
T ss_pred EEEEECHHHHHHhhccCcc-cccccccccCCCcccHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHhcCCCe
Confidence 9999998765554331100 000111 1223455666677778875543 356778888888888888761 2222
Q ss_pred EEeCCCCCCCCceEEEEEecCC-c-----HHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCC
Q psy15216 1677 YINGDMNNRIPHNLNISFNFIE-G-----ESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGR 1748 (2602)
Q Consensus 1677 ~i~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~ 1748 (2602)
..... ...+..+.++... . .++...| +||.++++. +++||+++.
T Consensus 375 ~~~~~----~g~~~~i~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g------------------------~~iRis~~~ 426 (449)
T 3a8u_X 375 IDIRN----FGLAGAIQIAPRDGDAIVRPFEAGMALWKAGFYVRFGG------------------------DTLQFGPTF 426 (449)
T ss_dssp EEEEE----ETTEEEEEECCBTTBSSHHHHHHHHHHHHHTEECEEET------------------------TEEEECCCT
T ss_pred EEEee----eEEEEEEEEecCcccccccHHHHHHHHHHCCcEEecCC------------------------CEEEEECCC
Confidence 21110 1233444454321 1 1455555 688887541 579999988
Q ss_pred CCCHHHHHHHHHHHHHh
Q psy15216 1749 FTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1749 ~~t~edid~li~~L~~~ 1765 (2602)
.+|++++++++++|++.
T Consensus 427 ~~t~~~i~~~l~~l~~~ 443 (449)
T 3a8u_X 427 NSKPQDLDRLFDAVGEV 443 (449)
T ss_dssp TCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 89999999999999974
|
| >2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A | Back alignment and structure |
|---|
Probab=99.70 E-value=2.9e-16 Score=207.70 Aligned_cols=319 Identities=13% Similarity=0.096 Sum_probs=211.4
Q ss_pred CCCHHHH-H-HHHH---HHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhC-CCCCcEEEeCCHHHHHHHHHHhcccc
Q psy15216 8 PIDPRVV-D-KMIP---YLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIY-ADPREIIWTSGATESNNLAIKGAAHF 81 (2602)
Q Consensus 8 ~~p~~v~-~-a~~~---~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g-~~~~~Iv~t~g~T~al~~~~~~l~~~ 81 (2602)
..+|.+. + ++.+ .+.... +.+ . .+ ..+...+++++++++++ .++++|+|++|+++|++.++.++...
T Consensus 70 ~~~p~v~~~~A~~~~~~~~~~~~---~~~-~--~~-~~~~~~~la~~la~~~~~~~~~~v~~~~~gseA~~~aik~a~~~ 142 (449)
T 2cjg_A 70 MNPPALVDDREFHAELMQAALNK---PSN-S--DV-YSVAMARFVETFARVLGDPALPHLFFVEGGALAVENALKAAFDW 142 (449)
T ss_dssp BSCHHHHTCHHHHHHHHHHHTCC---CCT-T--TC-CCHHHHHHHHHHHHHHCCTTCCEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcC---CCC-c--cc-CCHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHHH
Confidence 4589999 8 9999 554421 111 0 11 12346788899999997 56789999999999999999865311
Q ss_pred cc---------c-CCCEEEEcCCCCcccHHHHHHHH------hCCc-----EEEEeccCC--CC--------ccChHHHH
Q psy15216 82 YK---------K-RGKHIITVQTEHKSVLDSIRKLE------NDGF-----RVTYLKPKN--NG--------LITLSQLE 130 (2602)
Q Consensus 82 ~~---------~-~gd~Vlv~~~~~~s~~~~~~~~~------~~G~-----~v~~v~~~~--~~--------~ld~e~l~ 130 (2602)
.- + +|++|++.++.|+++...+..+. +.+. .+..++.++ .. ..++++|+
T Consensus 143 ~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~le 222 (449)
T 2cjg_A 143 KSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQAR 222 (449)
T ss_dssp HHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCCSCHHHHTTSCCCCCCEECCCCCCTTCCHHHHHHHHHHHHHHHH
T ss_pred hcccccccccccCCCCEEEEECCCcCCcccchhhhcCCchhhcccCCCCCCCcEEEcCCCchhhccccchhhHHHHHHHH
Confidence 11 1 28999999999987644322110 1122 456666543 11 25667798
Q ss_pred hhcc---CCceEEEEecccCccccccc----HHHHHHHHHhcCCEEEEecccc-ccccc----ccCCCCCccEEEecccc
Q psy15216 131 EKIC---SDTILVSVMLVNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKID----INIQNYKVDLMSFSAHK 198 (2602)
Q Consensus 131 ~~i~---~~tklv~i~~~~npTG~~~~----l~~I~~la~~~g~~livD~a~a-~g~~~----~dl~~~~~D~~~~S~~K 198 (2602)
++++ +++++|+++.++|++|.+.+ +++|.++|++||+++|+|++|+ +|... .+.....+|++ +++|
T Consensus 223 ~~i~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~~~~di~--t~sK 300 (449)
T 2cjg_A 223 AAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTGTAWAYQQLDVAPDIV--AFGK 300 (449)
T ss_dssp HHHHHSTTTEEEEEECSEETTTTCEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEE--EECG
T ss_pred HHHHhcCCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccccCCCccCcceeecccCCCceEE--EecC
Confidence 8884 67899888888899998777 9999999999999999999998 43221 11122356776 4669
Q ss_pred ccCCCCcEEEEEecCCCCcccceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhc--
Q psy15216 199 IYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMES-- 276 (2602)
Q Consensus 199 ~~Gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~-- 276 (2602)
.+ + +|++++++++++.+.+...+... .....+.+..+.+++.++|+.... ++..++..++.++++++|.+.
T Consensus 301 ~l--~-iG~~~~~~~~~~~l~~~~~~~~~--~~~t~~~n~~~~~aa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~l~~ 373 (449)
T 2cjg_A 301 KT--Q-VCGVMAGRRVDEVADNVFAVPSR--LNSTWGGNLTDMVRARRILEVIEA--EGLFERAVQHGKYLRARLDELAA 373 (449)
T ss_dssp GG--S-SEEEEECGGGGGSTTCTTTSTTS--SCCSSSSCHHHHHHHHHHHHHHHH--HTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cc--c-EEEEEECHHHhhhhhhcccCCcc--cccCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHh
Confidence 76 3 79999998887765542211100 111234566777777788885543 356677788888888888652
Q ss_pred -cCc-eEEeCCCCCCCCceEEEEEcc-cChhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecC
Q psy15216 277 -IEE-IYINGDMNNRIPHNLNISFNF-IEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIG 351 (2602)
Q Consensus 277 -~~g-~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~ 351 (2602)
++. +....+. ..++.+.++. .+..++...| +||.++++. .++||++++
T Consensus 374 ~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g-----------------------~~~iRi~~~ 426 (449)
T 2cjg_A 374 DFPAVVLDPRGR----GLMCAFSLPTTADRDELIRQLWQRAVIVLPAG-----------------------ADTVRFRPP 426 (449)
T ss_dssp HSTTTSEEEEEE----TTEEEEECSSHHHHHHHHHHHHHTTEECEEET-----------------------TTEEEECCC
T ss_pred hCCCceeeEeec----cEEEEEEECChHHHHHHHHHHHHCCeEEecCC-----------------------CCEEEEECC
Confidence 343 3322211 2233344432 1244566666 788887641 178999999
Q ss_pred CCCCHHHHHHHHHHHHhh
Q psy15216 352 RFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 352 ~~~t~edid~li~~L~~~ 369 (2602)
..++++|+++++++|++.
T Consensus 427 ~~~t~e~i~~~l~~l~~~ 444 (449)
T 2cjg_A 427 LTVSTAEIDAAIAAVRSA 444 (449)
T ss_dssp TTCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999999864
|
| >3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=5.6e-16 Score=205.09 Aligned_cols=313 Identities=13% Similarity=0.090 Sum_probs=203.3
Q ss_pred CCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCC-CcEEEeCCHHHHHHHHHHhhhhhhccCCC
Q psy15216 1405 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADP-REIIWTSGATESNNLAIKGAAHFYKKRGK 1483 (2602)
Q Consensus 1405 ~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~-~~iv~t~gaT~al~~al~~l~~~~~~~gd 1483 (2602)
.++.+.+++.+.++....+... ........+++++++++++... ++++|++|+++|+..++..+.. ..+++
T Consensus 60 ~~p~v~~a~~~~~~~~~~~~~~------~~~~~~~~~l~~~la~~~~~~~~~~v~~~~ggsea~~~al~~~~~--~~~~~ 131 (439)
T 3dxv_A 60 GHPAIVAAVSAAAANPAGATIL------SASNAPAVTLAERLLASFPGEGTHKIWFGHSGSDANEAAYRAIVK--ATGRS 131 (439)
T ss_dssp SCHHHHHHHHHHHHSCSCSCSS------SSEEHHHHHHHHHHHHTTTCTTTEEEEEESSHHHHHHHHHHHHHH--HHSCC
T ss_pred CCHHHHHHHHHHHHhccCcccc------ccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCHHHHHHHHHHHHHH--HhCCC
Confidence 5789999999988764221111 1122467889999999997655 6899999999999999998631 13567
Q ss_pred EEEEcCCCCcchHHHHHHHHhCCcE--------------EEEeccCCCCCc-----ChhHHHhhc----cCCceEEEEec
Q psy15216 1484 HIITVQTEHKSVLDSIRKLENDGFR--------------VTYLKPKNNGLI-----TLSQLEEKI----CSDTILVSVML 1540 (2602)
Q Consensus 1484 ~Vlv~~~~~~s~~~~~~~~~~~G~~--------------v~~v~~~~~~~i-----d~d~l~~~i----~~~t~lv~l~~ 1540 (2602)
.|++.++.|++.......+. +.. +..++.+..+.. |+++|++++ .+++++|++..
T Consensus 132 ~vi~~~~~yhg~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p 209 (439)
T 3dxv_A 132 GVIAFAGAYHGCTVGSMAFS--GHSVQADAAKADGLILLPYPDPYRPYRNDPTGDAILTLLTEKLAAVPAGSIGAAFIEP 209 (439)
T ss_dssp EEEEETTCCCCSSHHHHCC---------------CEEEECCCCSSSCBTTBTTSHHHHHHHHHHHHTSCTTCEEEEEECS
T ss_pred EEEEECCCCCCCcHHHHhhc--CCCchhhccccCCCCCCcEEcCCCcccccccHHHHHHHHHHHHHhcCCCCEEEEEEcc
Confidence 88888888766443332221 111 122332222222 689999999 56788999999
Q ss_pred cccccccccC----hHHHHHHhhhcCCEEEEecccc-cCc----ccccCCCCCccEEEEccccccCCCc--eEEEEEecC
Q psy15216 1541 VNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGK----IDINIQNYKVDLMSFSAHKIYGPKG--IGALYIRRN 1609 (2602)
Q Consensus 1541 ~~n~tG~~~~----l~~I~~ia~~~gi~vivD~a~~-~g~----~~~~l~~~~~D~~v~S~~K~~gp~G--~G~l~~~~~ 1609 (2602)
++|++|.+.| +++|.++|++||+++|+|++|+ ++. ...+.....+|++ |++|.+|+ | +|+++++++
T Consensus 210 ~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~g~~~~~~~~~~~~di~--s~sK~~~~-G~riG~~~~~~~ 286 (439)
T 3dxv_A 210 IQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLHCFEHEGFVPDIL--VLGKGLGG-GLPLSAVIAPAE 286 (439)
T ss_dssp SBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTTSSSSGGGGTTCCCSEE--EECGGGGT-TSCCEEEEEEHH
T ss_pred ccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhcCCCCCEE--EEcchhcC-CcceEEEEECHH
Confidence 9999999999 9999999999999999999996 221 1222333446776 67796553 4 799999988
Q ss_pred CCCccccccccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---CCcEEEeCCCCCCC
Q psy15216 1610 PRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMES---IEEIYINGDMNNRI 1686 (2602)
Q Consensus 1610 ~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~---~~gl~i~~~~~~~~ 1686 (2602)
+++.+.+... .. .. .+...+.+..++++.... +...++.+++.+++++.|.+. .+.+....+.
T Consensus 287 ~~~~~~~~~~------~~-t~-~~~~~~~aa~aal~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---- 352 (439)
T 3dxv_A 287 ILDCASAFAM------QT-LH-GNPISAAAGLAVLETIDR--DDLPAMAERKGRLLRDGLSELAKRHPLIGDIRGR---- 352 (439)
T ss_dssp HHTSCSSSSC------CT-TT-TCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEE----
T ss_pred HHhhhcCCCc------CC-Cc-ccHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEE----
Confidence 7776654321 11 12 455555555567765433 344556666666666666542 3444333211
Q ss_pred CceEEEEEe--------c-CCcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHH
Q psy15216 1687 PHNLNISFN--------F-IEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEI 1755 (2602)
Q Consensus 1687 ~~~~~~~~~--------~-~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edi 1755 (2602)
..+..+.+. . .....+...| +||.++++... .+++||+++...|++++
T Consensus 353 g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~---------------------~~~iRi~~~~~~t~e~i 411 (439)
T 3dxv_A 353 GLACGMELVCDRQSREPARAETAKLIYRAYQLGLVVYYVGMN---------------------GNVLEFTPPLTITETDI 411 (439)
T ss_dssp TTEEEEEEEEETTTTEECHHHHHHHHHHHHHHTEECEEESTT---------------------SCEEEECCCTTCCHHHH
T ss_pred EEEEEEEEecCccccCCCHHHHHHHHHHHHHCCcEEeecCCC---------------------CCEEEEECCCCCCHHHH
Confidence 122233331 1 1123455444 69998876321 27899999988999999
Q ss_pred HHHHHHHHHh
Q psy15216 1756 DFTIKLLKMK 1765 (2602)
Q Consensus 1756 d~li~~L~~~ 1765 (2602)
++++++|++.
T Consensus 412 ~~~l~~l~~~ 421 (439)
T 3dxv_A 412 HKALDLLDRA 421 (439)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999974
|
| >3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.5e-15 Score=198.12 Aligned_cols=327 Identities=12% Similarity=0.089 Sum_probs=208.8
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccc-c--
Q psy15216 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYK-K-- 84 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~-~-- 84 (2602)
..+|.+.+++.+.+......+. ....+...+++++++++++.+.+ |+|++|+++|++.++.++..... .
T Consensus 65 ~~~p~v~~A~~~~~~~~~~~~~-------~~~~~~~~~la~~l~~~~~~~~~-v~~~~ggseA~~~al~~~~~~~~~~g~ 136 (452)
T 3n5m_A 65 YGRKELAEAAYKQLQTLSYFPM-------SQSHEPAIKLAEKLNEWLGGEYV-IFFSNSGSEANETAFKIARQYYAQKGE 136 (452)
T ss_dssp BCCHHHHHHHHHHHTTCCCCCT-------TSEEHHHHHHHHHHHHHHTSCEE-EEEESSHHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCHHHHHHHHHHHHhcCCccc-------ccCCHHHHHHHHHHHHhCCCCce-EEEeCchHHHHHHHHHHHHHHHHhcCC
Confidence 4589999999998865321111 11234577899999999987666 99999999999999998762100 2
Q ss_pred -CCCEEEEcCCCCcccHHHHHHHHhC----------CcEEEEeccCCCCc---cC---------hHHHHhhcc----CCc
Q psy15216 85 -RGKHIITVQTEHKSVLDSIRKLEND----------GFRVTYLKPKNNGL---IT---------LSQLEEKIC----SDT 137 (2602)
Q Consensus 85 -~gd~Vlv~~~~~~s~~~~~~~~~~~----------G~~v~~v~~~~~~~---ld---------~e~l~~~i~----~~t 137 (2602)
+++.|++.++.|+++......+... ...+..++...... -| +++|+++++ +++
T Consensus 137 ~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~ 216 (452)
T 3n5m_A 137 PHRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIYDVECVKEVDRVMTWELSETI 216 (452)
T ss_dssp TTCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCCTTTSTTTTTSCGGGCHHHHHHHHHHHHHCGGGE
T ss_pred CCCCEEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCccccCccCCchhhHHHHHHHHHHHHHHhcCCCCE
Confidence 6799999999999875544433100 01234444321111 12 899999987 567
Q ss_pred eEEEEecc-cCccccccc----HHHHHHHHHhcCCEEEEecccc-cccc----cccCCCCCccEEEeccccccCC--CCc
Q psy15216 138 ILVSVMLV-NNEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKI----DINIQNYKVDLMSFSAHKIYGP--KGI 205 (2602)
Q Consensus 138 klv~i~~~-~npTG~~~~----l~~I~~la~~~g~~livD~a~a-~g~~----~~dl~~~~~D~~~~S~~K~~Gp--~G~ 205 (2602)
++|+++.+ +| ||.+.| +++|.++|++||+++|+|++|. +|.. ..+.....+|+++ ++|.+|+ ..+
T Consensus 217 ~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~~~~~~~~~~di~t--~sK~l~~G~~~i 293 (452)
T 3n5m_A 217 AAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISDEVICGFGRTGKAFGFMNYDVKPDIIT--MAKGITSAYLPL 293 (452)
T ss_dssp EEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTCCCSEEE--ECGGGGTTSSCC
T ss_pred EEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEecchhCCCcccccchhhhcCCCCCEEe--ecccccCCCcce
Confidence 88888888 89 999887 9999999999999999999986 4321 1222233467765 5694432 347
Q ss_pred EEEEEecCCCCcccceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhh---ccCceEE
Q psy15216 206 GALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLME---SIEEIYI 282 (2602)
Q Consensus 206 G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~---~~~g~~l 282 (2602)
|++++++++++.+.+....... ......+.+..+.+++.++|+.... +...++.+++.+++++.|.+ ..+.+..
T Consensus 294 g~~~~~~~i~~~~~~~~~~~~~-~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 370 (452)
T 3n5m_A 294 SATAVKREIYEAFKGKGEYEFF-RHINTFGGNPAACALALKNLEIIEN--ENLIERSAQMGSLLLEQLKEEIGEHPLVGD 370 (452)
T ss_dssp EEEEEEHHHHGGGCSSSTTCSC-CCCCSSTTCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHTTCTTEEE
T ss_pred EEEEECHHHHHHHhhccCCCCc-cccCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHhcCCCeEE
Confidence 9999999887776431000000 0011234566667777778875432 33445555555555555543 1344433
Q ss_pred eCCCCCCCCceEEEEEccc-C---------hhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEec
Q psy15216 283 NGDMNNRIPHNLNISFNFI-E---------GESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTI 350 (2602)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~-~---------~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~ 350 (2602)
..+. ..+..+.+... . ...+...+ +||.++++..+.++ ..++|||++
T Consensus 371 ~~~~----g~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~-----------------~~~~iRi~~ 429 (452)
T 3n5m_A 371 IRGK----GLLVGIELVNDKETKEPIDNDKIASVVNACKEKGLIIGRNGMTTAG-----------------YNNILTLAP 429 (452)
T ss_dssp EEES----SSCEEEEEEEETTTTEECCHHHHHHHHHHHHHTTEECEECTTSSTT-----------------CCCEEEECC
T ss_pred EEEE----EEEEEEEEecCCcccCCCCHHHHHHHHHHHHHCCcEEeecCcccCC-----------------CCCEEEEEC
Confidence 3221 12233433211 0 12444444 79999987655332 137899999
Q ss_pred CCCCCHHHHHHHHHHHHhh
Q psy15216 351 GRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 351 ~~~~t~edid~li~~L~~~ 369 (2602)
+...|++|+++++++|++.
T Consensus 430 ~~~~t~e~i~~~l~~l~~~ 448 (452)
T 3n5m_A 430 PLVISSEEIAFVIGTLKTA 448 (452)
T ss_dssp CTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 8889999999999999864
|
| >3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=5.9e-16 Score=209.09 Aligned_cols=310 Identities=13% Similarity=0.079 Sum_probs=206.5
Q ss_pred HHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCC
Q psy15216 42 AIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN 121 (2602)
Q Consensus 42 ~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~ 121 (2602)
.+.++++.+|+++|++ ..+++++|++.|+..++.++. +|||+|+++.+.|.|+...+... |+++++++++.+
T Consensus 196 ~i~eaE~~lA~~fGa~-~a~~v~nGts~An~~ai~al~----~pGD~VLv~r~~H~S~~~~l~ls---Ga~pv~v~~~~~ 267 (715)
T 3n75_A 196 PHKEAEQYIARVFNAD-RSYMVTNGTSTANKIVGMYSA----PAGSTILIDRNCHKSLTHLMMMS---DVTPIYFRPTRN 267 (715)
T ss_dssp HHHHHHHHHHHHHTCS-EEEEESSHHHHHHHHHHHHHC----CTTCEEEEESSCCHHHHHHHHHS---CCEEEEECCCBC
T ss_pred HHHHHHHHHHHHhCCC-CceEECcHHHHHHHHHHHHhC----CCCCEEEECCCccHHHHHHHHHc---CCEEEEEecccc
Confidence 4678999999999985 356677777899999999988 89999999999999998876655 999999987532
Q ss_pred -C----cc-----ChHHHHhhccC--Cce---EEEEecccCcccccccHHHHHHHHHhcCCEEEEeccccccc--ccc--
Q psy15216 122 -G----LI-----TLSQLEEKICS--DTI---LVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGK--IDI-- 182 (2602)
Q Consensus 122 -~----~l-----d~e~l~~~i~~--~tk---lv~i~~~~npTG~~~~l~~I~~la~~~g~~livD~a~a~g~--~~~-- 182 (2602)
+ .+ |+++|++++++ ++| ++++++| |++|.++|+++|+++|++++ +++|+||+.+. .+.
T Consensus 268 ~~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p-n~~G~v~dl~~I~ela~~~~--livDEAH~~~~~f~~~~~ 344 (715)
T 3n75_A 268 AYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLYNTDFIKKTLDVKS--IHFDSAWVPYTNFSPIYE 344 (715)
T ss_dssp TTCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS-CTTSEEECHHHHHHHCCCSE--EEEECTTCTTGGGSGGGT
T ss_pred ccccccCcccccCCHHHHHHHHhhCcCccCceEEEEECC-CCCCccCCHHHHHHHhCcCc--EEEccccccccccCCccc
Confidence 2 23 89999999973 445 8999999 99999999999999998774 79999998653 111
Q ss_pred cCC--CCC--ccEE---Eecccc-ccCCCCcEEEEEecCCCC-cccceecCCCccccccccCcchhHHHHHHHHHHHHHH
Q psy15216 183 NIQ--NYK--VDLM---SFSAHK-IYGPKGIGALYIRRNPRT-RIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARI 253 (2602)
Q Consensus 183 dl~--~~~--~D~~---~~S~~K-~~Gp~G~G~l~~~~~~~~-~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~ 253 (2602)
+.. ..+ +|++ +.|+|| +.|+.+.|+++++++... .+.... ..+.+++|+++.++++.+|++++..
T Consensus 345 ~~~al~~g~~aD~vii~~~S~hKtL~gltqgs~i~v~~~i~~~~~~~~~------~~~~STSpsy~~~AsldaA~~~~~~ 418 (715)
T 3n75_A 345 GKCGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGDVNEETFNEAY------MMHTTTSPHYGIVASTETAAAMMKG 418 (715)
T ss_dssp TSSTTSSSCCTTCEEEEEECHHHHSSCCTTCEEEEEESCCCHHHHHHHH------HHTSCSSCCHHHHHHHHHHHHHHSH
T ss_pred cccccccCcCCCEEEEEEecccccccCCCCeeEEEeCchhhHHHHHHHH------HhhcCCCchHHHHHHHHHHHHHHHh
Confidence 111 112 5755 889999 556878899999876321 121111 1234678999999999999987653
Q ss_pred -hHHHHHHHHHHHHHHHHHHHhhccCc------eEEeCCCCCCCCceEEEE-------EcccChhHHHHHhCCeEEcc-c
Q psy15216 254 -EMKEELKRILFLQKRLYNGLMESIEE------IYINGDMNNRIPHNLNIS-------FNFIEGESLLMAIKDIAVSS-G 318 (2602)
Q Consensus 254 -~~~~~~~~~~~l~~~l~~~L~~~~~g------~~l~~~~~~~~~~~~~~~-------~~~~~~~~~~~~L~gI~v~~-g 318 (2602)
...+..++..++++++++.|.+ +++ ++++.+..-.....+.+. |..........+--++.+.. |
T Consensus 419 ~~g~~~~~~l~~~a~~~r~~L~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~gf~~~~~~~~~~Dp~Kl~i~~~~ 497 (715)
T 3n75_A 419 NAGKRLINGSIERAIKFRKEIKR-LRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLDPIKVTLLTPG 497 (715)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHHHSSSCCCEESSCSCCCSCSCEECCTTCCTTCCTTCCSSSEEECTTEEEEECSC
T ss_pred hccHHHHHHHHHHHHHHHHHHHH-hhhhcccceeeccCcccccchhhhccCcccccccccccccCcccCCCeEEEEEcCC
Confidence 4567888999999999999977 443 566654321111110000 00000000000001233322 2
Q ss_pred ccCCC-----CC--CChHHHHHHcCCCccCC-CCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 319 SACTS-----AS--LEPSYVLRALGCNDELA-HSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 319 ~~~~~-----~~--~~~~~~~~~~g~~~~~~-~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
....+ +. ......++..|+..+.. ...|=+-++..+|.+++++++++|.+.
T Consensus 498 ~~~~G~~~~~Gi~g~~~~~~L~~~~I~~E~~d~~~vl~l~s~g~~~~~~~~L~~aL~~~ 556 (715)
T 3n75_A 498 MEKDGTMSDFGIPASIVAKYLDEHGIVVEKTGPYNLLFLFSIGIDKTKALSLLRALTDF 556 (715)
T ss_dssp BCTTSCBCSSCCCHHHHHHHHHHTTCCCSEEETTEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCccccCCCcHHHHHHHHHHCCCEEEecCCCcEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 11000 00 01122345557655543 355666666778999999999999864
|
| >4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.3e-16 Score=206.73 Aligned_cols=282 Identities=13% Similarity=0.067 Sum_probs=190.8
Q ss_pred HHHHHHHHHHHh-CCC-----CCcEE--EeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEE
Q psy15216 1439 IEKARNEVAQLI-YAD-----PREII--WTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVT 1510 (2602)
Q Consensus 1439 ~~~lr~~ia~~~-g~~-----~~~iv--~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~ 1510 (2602)
..++|+++++++ |.+ +++|. .|.++++++..+...+. ...++||+|++++|.|+++...++.. |++++
T Consensus 81 ~~~lr~~ia~~~~~~~~~~~~~~~i~~~~~~~g~ga~~~~~~~~~-~~~~~gd~Vlv~~p~y~~~~~~~~~~---g~~~~ 156 (409)
T 4eu1_A 81 IASFVEEAQKLCFGPTCAALRDGRIASCQTLGGTGALRIGGDLLN-RFVANCNRIYGPDVGYPNHESIFAKA---GMELT 156 (409)
T ss_dssp CHHHHHHHHHHHHCSSCHHHHTTCEEEEEESHHHHHHHHHHHHGG-GTSSSCCEEEEESSCCTHHHHHHHHT---TCEEE
T ss_pred cHHHHHHHHHHHcCCCchhhccCceeeeecccchHHHHHHHHHHH-HhcCCCCEEEEeCCCcHhHHHHHHHc---CCeEE
Confidence 467899999976 665 67784 49999999988755332 23479999999999999987776665 99999
Q ss_pred Eecc--CCCCCcChhHHHhhcc---CCceEEEEeccccccccccC---hHHHHHHhhhcCCEEEEecccccCcc------
Q psy15216 1511 YLKP--KNNGLITLSQLEEKIC---SDTILVSVMLVNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQAVGKI------ 1576 (2602)
Q Consensus 1511 ~v~~--~~~~~id~d~l~~~i~---~~t~lv~l~~~~n~tG~~~~---l~~I~~ia~~~gi~vivD~a~~~g~~------ 1576 (2602)
.++. +.++.+|+++++++++ ++++++++++|+||||.++| +++|+++|++||+++|+|++|+....
T Consensus 157 ~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~ 236 (409)
T 4eu1_A 157 PYSYYDPATKGLNLAGMLECLDKAPEGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYD 236 (409)
T ss_dssp EECCEETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHH
T ss_pred EEEeecCcCCcCcHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccCCcccc
Confidence 9987 3457799999999996 35677788999999999999 45599999999999999999763221
Q ss_pred --cc-cC-CCCCccEEEEccccccCCCc--eEEE--EEec-C----CCCccccccccCCccccCCCCCcchhHHHHHHHH
Q psy15216 1577 --DI-NI-QNYKVDLMSFSAHKIYGPKG--IGAL--YIRR-N----PRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEA 1643 (2602)
Q Consensus 1577 --~~-~l-~~~~~D~~v~S~~K~~gp~G--~G~l--~~~~-~----~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~a 1643 (2602)
++ .+ ......+++.|++|.+|++| +||+ ++.+ + +++.+..... ....+++.....++..+
T Consensus 237 ~~~~~~~~~~~~~~i~~~S~SK~~g~~G~riG~~~~v~~~~~~~~~l~~~~~~~~~-------~~~~~~~~~~~~~~~~~ 309 (409)
T 4eu1_A 237 AFVPRHLVDMVPNLIVAQSFSKNFGLYGHRCGALHISTASAEEAKRLVSQLALLIR-------PMYNNPPLYGAWVVSSI 309 (409)
T ss_dssp THHHHHHHTTSSCCEEEEECTTTSSCGGGCCEEEEEECSSHHHHHHHHHHHHHHHH-------HHHSSCCHHHHHHHHHH
T ss_pred hHHHHHHHhhCCcEEEEecCcccccCccCCceEEEEEeCCHHHHHHHHHHHHHHHh-------hhcCCCChHHHHHHHHH
Confidence 11 11 11223477889999998888 7997 5543 3 3333322110 01124455556566666
Q ss_pred HHHH------HHHHHHHHHHHHHHHHHHHHHHhhc-CCc-EEEeCCCCCCCCceEEEEEecCCcHHHHHhc--CCEEEcc
Q psy15216 1644 FRLA------RIEMKEELKRILFLQKRLYNGLMES-IEE-IYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDIAVSS 1713 (2602)
Q Consensus 1644 L~~~------~~~~~~~~~~~~~l~~~l~~~L~~~-~~g-l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~v~~ 1713 (2602)
|+.. ...+++.++++.++++++.+.|.+. .++ +.+..+. ..++.+...+.+.+...+ +||.+.+
T Consensus 310 l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~------~~~~~~~~~~~~~~~~ll~~~gv~v~p 383 (409)
T 4eu1_A 310 LKDPQLTALWKKELKQMSSRIAEVRKRLVSELKACGSVHDWSHIERQ------VGMMAYTGLTREQVELLRSEYHIYMTL 383 (409)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHS------CSSEEECCCCHHHHHHHHHHHCEECCT
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceecCC------ceEEEEeCCCHHHHHHHHHcCCEEEcC
Confidence 6621 2346778889999999999999872 111 3332221 112334433333322222 5888763
Q ss_pred ccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1714 GSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1714 g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
+ .||+++.. +.+++++++++|++.
T Consensus 384 ~---------------------------~Ri~~~~~-~~~~i~~~~~~l~~~ 407 (409)
T 4eu1_A 384 N---------------------------GRAAVSGL-NSTNVEYVSQAIHNV 407 (409)
T ss_dssp T---------------------------CEEEGGGC-CTTTHHHHHHHHHHH
T ss_pred C---------------------------CEEEEEec-CHhhHHHHHHHHHHH
Confidence 2 38888765 456799999999863
|
| >3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.69 E-value=6.2e-16 Score=204.07 Aligned_cols=327 Identities=13% Similarity=0.055 Sum_probs=193.5
Q ss_pred CCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhc----c
Q psy15216 1405 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYK----K 1480 (2602)
Q Consensus 1405 ~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~----~ 1480 (2602)
.++.+.+++.+.++....+... .+ ......+++++++++++.++++|+||+|+++|+..++..+..... .
T Consensus 46 ~~p~v~~a~~~~~~~~~~~~~~-~~-----~~~~~~~l~~~la~~~~~~~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~ 119 (430)
T 3i4j_A 46 GRAEVGERMAAQAARLPFVHGS-QF-----SSDVLEEYAGRLARFVGLPTFRFWAVSGGSEATESAVKLARQYHVERGEP 119 (430)
T ss_dssp CCHHHHHHHHHHHHHCCCCCTT-TC-----EEHHHHHHHHHHHHHTTCTTCEEEEESSHHHHHHHHHHHHHHHHHHTTCT
T ss_pred CCHHHHHHHHHHHHhccccccc-cc-----CCHHHHHHHHHHHHhCCCCCCEEEEeCcHHHHHHHHHHHHHHHHHhcCCC
Confidence 3789999999988763211111 11 123567889999999998888999999999999999998762100 2
Q ss_pred CCCEEEEcCCCCcchHHHHHHHHhCCc------------EEEEeccCCC---CCcChhHHHhhcc----CCceEEEEecc
Q psy15216 1481 RGKHIITVQTEHKSVLDSIRKLENDGF------------RVTYLKPKNN---GLITLSQLEEKIC----SDTILVSVMLV 1541 (2602)
Q Consensus 1481 ~gd~Vlv~~~~~~s~~~~~~~~~~~G~------------~v~~v~~~~~---~~id~d~l~~~i~----~~t~lv~l~~~ 1541 (2602)
++++|++.++.|+++......+..... .+..++.+.. +..|+++|+++++ +++++|+++.+
T Consensus 120 ~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~ 199 (430)
T 3i4j_A 120 GRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDPARNGAEDAEGLRALLEREGPETVAAFMAEPV 199 (430)
T ss_dssp TCCEEEEETTC-------------------------CGGGSCEECCCCTTSCHHHHHTHHHHHHHHHCGGGEEEEEECSS
T ss_pred CCcEEEEEeCCcCCCCcccccccCccccccccCCcCCCCCceEcCCCcccchhhHHHHHHHHHHHhcCCCCEEEEEEcCc
Confidence 478999999999886654433311100 1222332211 2246689999987 45667777777
Q ss_pred cc-ccccccC----hHHHHHHhhhcCCEEEEecccc-cCcc----cccCC-CCCccEEEEccccccCCCc---eEEEEEe
Q psy15216 1542 NN-EIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKI----DINIQ-NYKVDLMSFSAHKIYGPKG---IGALYIR 1607 (2602)
Q Consensus 1542 ~n-~tG~~~~----l~~I~~ia~~~gi~vivD~a~~-~g~~----~~~l~-~~~~D~~v~S~~K~~gp~G---~G~l~~~ 1607 (2602)
++ ++|...+ +++|.++|++||+++|+|++|+ ++.. ..... ...+|+++ ++|.+++ | +|+++++
T Consensus 200 ~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~g~~~~~~~~~~~~~di~t--~sK~l~~-G~~r~G~~~~~ 276 (430)
T 3i4j_A 200 VGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGSPLALSRWSGVTPDIAV--LGKGLAA-GYAPLAGLLAA 276 (430)
T ss_dssp CCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTTCCCSEEE--ECGGGTT-TSSCCEEEEEC
T ss_pred ccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhhhhcCCCCcEEE--EcccccC-CccccEEEEEC
Confidence 77 8998777 9999999999999999999986 4321 11222 33467664 5696553 4 7999999
Q ss_pred cCCCCccccccccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cCCcEEEeCCCCC
Q psy15216 1608 RNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLME---SIEEIYINGDMNN 1684 (2602)
Q Consensus 1608 ~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~---~~~gl~i~~~~~~ 1684 (2602)
+++++.+.+..... ......+.+...+.+..++|+.... ++..++.+++.+++++.|.+ ..+++....+.
T Consensus 277 ~~i~~~~~~~~~~~---~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-- 349 (430)
T 3i4j_A 277 PQVYETVMGGSGAF---MHGFTYAGHPVSVAAGLSVLDIVER--EDLTGAAKERGAQLLAGLQALQARFPQMMQVRGT-- 349 (430)
T ss_dssp HHHHHHHHHTTCBC---CCCCTTTTCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEE--
T ss_pred HHHHHHHhccCCcc---cccCCCCCCHHHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEE--
Confidence 87766654320000 0011224555666666677775433 23344444444444444433 14555443221
Q ss_pred CCCceEEEEEecC----------CcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCH
Q psy15216 1685 RIPHNLNISFNFI----------EGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTE 1752 (2602)
Q Consensus 1685 ~~~~~~~~~~~~~----------~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~ 1752 (2602)
..+..+.+... ...++...| +||.++++..+..+ ...+++||+++...|+
T Consensus 350 --g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~----------------~~~~~iRi~~~~~~t~ 411 (430)
T 3i4j_A 350 --GLLLGVVLGDLATGQAFETPGIASRIGAAALKRGLITYPGSGAEPN----------------GRGDHLLLGPPLSITA 411 (430)
T ss_dssp --TTEEEEEEC------------CHHHHHHHHHHTTEECC---------------------------CEEEECCCTTCCH
T ss_pred --EEEEEEEeccccccCCCccHHHHHHHHHHHHhCCCEEEecccccCC----------------CCCCEEEEECCCCCCH
Confidence 12233333211 113455555 89999876432211 1137899999988999
Q ss_pred HHHHHHHHHHHHh
Q psy15216 1753 KEIDFTIKLLKMK 1765 (2602)
Q Consensus 1753 edid~li~~L~~~ 1765 (2602)
+++++++++|++.
T Consensus 412 e~i~~~l~~l~~~ 424 (430)
T 3i4j_A 412 AEVDGLLALLAGA 424 (430)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999974
|
| >2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=3.3e-15 Score=196.75 Aligned_cols=308 Identities=15% Similarity=0.142 Sum_probs=207.6
Q ss_pred CCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhh-----c
Q psy15216 1405 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFY-----K 1479 (2602)
Q Consensus 1405 ~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~-----~ 1479 (2602)
.++.+.+++.+.++... +.+.. + ..+...++++++++++| .++++|++|+++|+..++.++.... .
T Consensus 93 ~~p~v~~Ai~~~~~~~~-~~~~~-~-----~~~~~~~l~~~la~~~g--~~~v~~~~sGseA~~~al~~~~~~~~~~~g~ 163 (439)
T 2oat_A 93 CHPKIVNALKSQVDKLT-LTSRA-F-----YNNVLGEYEEYITKLFN--YHKVLPMNTGVEAGETACKLARKWGYTVKGI 163 (439)
T ss_dssp TCHHHHHHHHHHHTTCS-CCCTT-S-----EESSHHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHhcC-cccCc-c-----CCHHHHHHHHHHHHhcC--CCEEEEeCCHHHHHHHHHHHHHHHhhhccCC
Confidence 67899999999887632 11111 1 12346788899999998 4689999999999999998875210 1
Q ss_pred cCC-CEEEEcCCCCcchHH-HHHHHH----hCC-----cEEEEeccCCCCCcChhHHHhhc-cCCceEEEEecccccccc
Q psy15216 1480 KRG-KHIITVQTEHKSVLD-SIRKLE----NDG-----FRVTYLKPKNNGLITLSQLEEKI-CSDTILVSVMLVNNEIGV 1547 (2602)
Q Consensus 1480 ~~g-d~Vlv~~~~~~s~~~-~~~~~~----~~G-----~~v~~v~~~~~~~id~d~l~~~i-~~~t~lv~l~~~~n~tG~ 1547 (2602)
.+| ++|+++++.|++... .+.... ..+ ..+..++. .|+++|++++ ++++++|++.++++++|.
T Consensus 164 ~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~-----~d~~~le~~l~~~~~~~vi~ep~~~~~G~ 238 (439)
T 2oat_A 164 QKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPY-----NDLPALERALQDPNVAAFMVEPIQGEAGV 238 (439)
T ss_dssp CTTCCEEEEETTCCCCSSHHHHTTCCCHHHHTTSCSCCTTEEEECS-----SCHHHHHHHTTSTTEEEEEECSSBTTTTS
T ss_pred CCCCCeEEEEcCCCCCCCHhHhhcCCChhcccCCCCCCCCeEEeCC-----CCHHHHHHHhCCCCEEEEEEECCCCCCCC
Confidence 356 899999999877533 332211 001 34555553 3899999999 578888888888888998
Q ss_pred cc----ChHHHHHHhhhcCCEEEEecccc-cCcc----cccCCCCCccEEEEccccccCCCc---eEEEEEecCCCCccc
Q psy15216 1548 IQ----PILEIGELCRSKGVIFHCDAAQA-VGKI----DINIQNYKVDLMSFSAHKIYGPKG---IGALYIRRNPRTRIE 1615 (2602)
Q Consensus 1548 ~~----~l~~I~~ia~~~gi~vivD~a~~-~g~~----~~~l~~~~~D~~v~S~~K~~gp~G---~G~l~~~~~~~~~l~ 1615 (2602)
+. ++++|.++|++||+++|+|++|. +|.. .++.....+|++ |++|.+|+ | +|++++++++++.+.
T Consensus 239 ~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~g~~~~~~~~~~~~Di~--t~sK~l~~-G~~~~G~v~~~~~~~~~l~ 315 (439)
T 2oat_A 239 VVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPDIV--LLGKALSG-GLYPVSAVLCDDDIMLTIK 315 (439)
T ss_dssp BCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGT-TSSCCEEEEECHHHHTTSC
T ss_pred cCCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCcchhHHHhCCCCcEE--EecccccC-CCCCeEEEEECHHHHhccC
Confidence 77 59999999999999999999995 3211 112223347876 67795543 4 799999987766665
Q ss_pred cccccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCcEEEeCCCCCCCCceEEEEE
Q psy15216 1616 AQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMES-IEEIYINGDMNNRIPHNLNISF 1694 (2602)
Q Consensus 1616 ~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~-~~gl~i~~~~~~~~~~~~~~~~ 1694 (2602)
+... .. ..+.+...+++..++|+.... +...++..++.+++.+.|.+. .+.+... + ....+..+.+
T Consensus 316 ~~~~------~~-t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~-~---~~g~~~~v~l 382 (439)
T 2oat_A 316 PGEH------GS-TYGGNPLGCRVAIAALEVLEE--ENLAENADKLGIILRNELMKLPSDVVTAV-R---GKGLLNAIVI 382 (439)
T ss_dssp TTSS------CC-SSTTCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHTTSCTTTEEEE-E---EETTEEEEEE
T ss_pred CCCc------cc-CCCcCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHhcCCCcEEE-E---eeeeEEEEEE
Confidence 4211 11 123455566666677775543 356778888999999999772 1211111 0 0123334444
Q ss_pred ecC---CcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1695 NFI---EGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1695 ~~~---~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
+.. +..++...| +||.++++. .+++|++++...|++|+++++++|++.
T Consensus 383 ~~~~~~~~~~l~~~l~~~Gv~v~~~~-----------------------~~~iRi~~~~~~t~e~i~~~l~~l~~~ 435 (439)
T 2oat_A 383 KETKDWDAWKVCLRLRDNGLLAKPTH-----------------------GDIIRFAPPLVIKEDELRESIEIINKT 435 (439)
T ss_dssp CCCSSCCHHHHHHHHHHTTEECCBSS-----------------------SSEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred ecCccHHHHHHHHHHHHCCeEEecCC-----------------------CCEEEEECccCCCHHHHHHHHHHHHHH
Confidence 432 245666665 799887531 278999999889999999999999873
|
| >3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=8e-16 Score=207.81 Aligned_cols=309 Identities=13% Similarity=0.088 Sum_probs=205.1
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCC
Q psy15216 1437 KAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN 1516 (2602)
Q Consensus 1437 ~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~ 1516 (2602)
..+.++++.+|+++|++ ..+++++|++.|+..+++++. ++||+|+++.+.|.|+...+... |+++++++.+.
T Consensus 195 g~i~eaE~~lA~~fGa~-~a~~v~nGts~An~~ai~al~----~pGD~VLv~r~~H~S~~~~l~ls---Ga~pv~v~~~~ 266 (715)
T 3n75_A 195 GPHKEAEQYIARVFNAD-RSYMVTNGTSTANKIVGMYSA----PAGSTILIDRNCHKSLTHLMMMS---DVTPIYFRPTR 266 (715)
T ss_dssp THHHHHHHHHHHHHTCS-EEEEESSHHHHHHHHHHHHHC----CTTCEEEEESSCCHHHHHHHHHS---CCEEEEECCCB
T ss_pred HHHHHHHHHHHHHhCCC-CceEECcHHHHHHHHHHHHhC----CCCCEEEECCCccHHHHHHHHHc---CCEEEEEeccc
Confidence 35789999999999985 245566676899999999987 89999999999999998876554 99999998753
Q ss_pred C-CC----c-----ChhHHHhhccC--Cce---EEEEeccccccccccChHHHHHHhhhcCCEEEEecccccCcc--cc-
Q psy15216 1517 N-GL----I-----TLSQLEEKICS--DTI---LVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKI--DI- 1578 (2602)
Q Consensus 1517 ~-~~----i-----d~d~l~~~i~~--~t~---lv~l~~~~n~tG~~~~l~~I~~ia~~~gi~vivD~a~~~g~~--~~- 1578 (2602)
+ +. + |+++|++++.+ +++ ++++++| |++|.++|+++|+++|++++ +++|+||+.+.. +.
T Consensus 267 ~~~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p-n~~G~v~dl~~I~ela~~~~--livDEAH~~~~~f~~~~ 343 (715)
T 3n75_A 267 NAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLYNTDFIKKTLDVKS--IHFDSAWVPYTNFSPIY 343 (715)
T ss_dssp CTTCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS-CTTSEEECHHHHHHHCCCSE--EEEECTTCTTGGGSGGG
T ss_pred cccccccCcccccCCHHHHHHHHhhCcCccCceEEEEECC-CCCCccCCHHHHHHHhCcCc--EEEccccccccccCCcc
Confidence 2 22 3 89999999973 344 8999999 99999999999999998774 799999986531 11
Q ss_pred -cCCCC--C--ccEE---EEcccc-ccCCCceEEEEEecCCCC-ccccccccCCccccCCCCCcchhHHHHHHHHHHHHH
Q psy15216 1579 -NIQNY--K--VDLM---SFSAHK-IYGPKGIGALYIRRNPRT-RIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLAR 1648 (2602)
Q Consensus 1579 -~l~~~--~--~D~~---v~S~~K-~~gp~G~G~l~~~~~~~~-~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~ 1648 (2602)
+...+ + +|++ +.|+|| +.|+++.|+++++++... .+.... ..+.+++++++.++++.+|++++.
T Consensus 344 ~~~~al~~g~~aD~vii~~~S~hKtL~gltqgs~i~v~~~i~~~~~~~~~------~~~~STSpsy~~~AsldaA~~~~~ 417 (715)
T 3n75_A 344 EGKCGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGDVNEETFNEAY------MMHTTTSPHYGIVASTETAAAMMK 417 (715)
T ss_dssp TTSSTTSSSCCTTCEEEEEECHHHHSSCCTTCEEEEEESCCCHHHHHHHH------HHTSCSSCCHHHHHHHHHHHHHHS
T ss_pred ccccccccCcCCCEEEEEEecccccccCCCCeeEEEeCchhhHHHHHHHH------HhhcCCCchHHHHHHHHHHHHHHH
Confidence 11112 2 5755 889999 667878899999876321 111111 234567899999999999998765
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHhhcCCc------EEEeCCCCCCCCceEEEE-------EecCCcHH-HHHhcCCEEEcc
Q psy15216 1649 I-EMKEELKRILFLQKRLYNGLMESIEE------IYINGDMNNRIPHNLNIS-------FNFIEGES-LLMAIKDIAVSS 1713 (2602)
Q Consensus 1649 ~-~~~~~~~~~~~l~~~l~~~L~~~~~g------l~i~~~~~~~~~~~~~~~-------~~~~~~~~-~~~~L~gI~v~~ 1713 (2602)
. ...+.+++..++.++++++|.+ +++ +.++.+..-.....+.+. |....... .++- -++.+..
T Consensus 418 ~~~g~~~~~~l~~~a~~~r~~L~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~gf~~~~~~~~~~Dp-~Kl~i~~ 495 (715)
T 3n75_A 418 GNAGKRLINGSIERAIKFRKEIKR-LRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLDP-IKVTLLT 495 (715)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHSSSCCCEESSCSCCCSCSCEECCTTCCTTCCTTCCSSSEEECT-TEEEEEC
T ss_pred hhccHHHHHHHHHHHHHHHHHHHH-hhhhcccceeeccCcccccchhhhccCcccccccccccccCcccCCC-eEEEEEc
Confidence 3 4566788889999999999977 443 466654321101110000 00000000 0011 2333332
Q ss_pred -ccccCC---CCCChh----HHHHHcCCCccccC-CeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1714 -GSACTS---ASLEPS----YVLRALGCNDELAH-SSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1714 -g~~~~~---~~~~~~----~~~~~~~~~~~~~~-~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
|..... ..-.+. .++...++..+.+. ..|=+-++..+|.+++++++++|.+
T Consensus 496 ~~~~~~G~~~~~Gi~g~~~~~~L~~~~I~~E~~d~~~vl~l~s~g~~~~~~~~L~~aL~~ 555 (715)
T 3n75_A 496 PGMEKDGTMSDFGIPASIVAKYLDEHGIVVEKTGPYNLLFLFSIGIDKTKALSLLRALTD 555 (715)
T ss_dssp SCBCTTSCBCSSCCCHHHHHHHHHHTTCCCSEEETTEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred CCCCCCCccccCCCcHHHHHHHHHHCCCEEEecCCCcEEEEeCCCCCHHHHHHHHHHHHH
Confidence 211000 000111 12344566554432 5566667777899999999999987
|
| >3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.3e-16 Score=203.83 Aligned_cols=254 Identities=14% Similarity=0.083 Sum_probs=175.8
Q ss_pred HHHHHHHHHHHHhCCCCCc--EEEeCCHHHHHHHHHHhcccccccCCCEEEEcC-CCCcccHHHHH-------HHHhCCc
Q psy15216 42 AIEKARNEVAQLIYADPRE--IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQ-TEHKSVLDSIR-------KLENDGF 111 (2602)
Q Consensus 42 ~~~~~r~~lA~~~g~~~~~--Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~-~~~~s~~~~~~-------~~~~~G~ 111 (2602)
..+++++++++++|++... ++++ |+|+|+..++.++. ++||+|+++. +.|+++...+. .++..|+
T Consensus 66 ~~~~l~~~la~~~g~~~~~~~i~~~-sGt~Ai~~al~al~----~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~G~ 140 (431)
T 3ht4_A 66 GRDTLEKVYADVFGAEAGLVRPQII-SGTHAISTALFGIL----RPGDELLYITGKPYDTLEEIVGVRGKGVGSFKEYNI 140 (431)
T ss_dssp HHHHHHHHHHHHTTCSEECCBTTSC-SHHHHHHHHHHTTC----CTTCEEEECSSSCCTTHHHHTTSSSCSSSCSGGGTC
T ss_pred hHHHHHHHHHHHhCCCcccccceee-CHHHHHHHHHHHhC----CCCCEEEEeCCCCchhHHHHHhhcccccchHHHcCC
Confidence 3788999999999986432 2244 77999999999887 8999999998 99999876652 3345699
Q ss_pred EEEEeccCCCCccChHHHHhhccCCceEEEEec-ccCc---ccccccHHHHHHHHHh--cCCEEEEecccccccccccCC
Q psy15216 112 RVTYLKPKNNGLITLSQLEEKICSDTILVSVML-VNNE---IGVIQPILEIGELCRS--KGVIFHCDAAQAVGKIDINIQ 185 (2602)
Q Consensus 112 ~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~-~~np---TG~~~~l~~I~~la~~--~g~~livD~a~a~g~~~~dl~ 185 (2602)
+++.++.++++.+|+++|+++++++|++|++++ ++|| +|...++++|+++|++ +|+++++|++|+.+.......
T Consensus 141 ~~~~v~~~~~~~~d~e~l~~~l~~~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livDea~~~~~~~~~~~ 220 (431)
T 3ht4_A 141 GYNAVPLTEGGLVDFEAVAAAIHSNTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIEEQEPC 220 (431)
T ss_dssp EEEECCBCTTSSBCHHHHHHHCCTTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTSSSCCGG
T ss_pred EEEEeCCCCCCCcCHHHHHhhcCCCCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEeCCChhhccCCCcc
Confidence 999999988899999999999999999999996 4444 5556678899999999 999999999998876433444
Q ss_pred CCCccEEEecccccc----CCCCcEEEEEecCCCCcccceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHH
Q psy15216 186 NYKVDLMSFSAHKIY----GPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKR 261 (2602)
Q Consensus 186 ~~~~D~~~~S~~K~~----Gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~ 261 (2602)
.+++|++++|+||.+ +++| |++++++++++.+.......+. ....+ +++.....+..++.. .....++
T Consensus 221 ~~g~Di~~~S~sK~lgg~~~~~G-G~v~~~~~li~~l~~~~~~~~~--g~~~~-~~~~~~~~~~~~l~~----~~~~~~~ 292 (431)
T 3ht4_A 221 HVGADLMAGSLIKNPGGGIVKTG-GYIVGKEQYVEACAYRLTSPGI--GAEAG-ASLYSLQEMYQGFFL----APHVAGQ 292 (431)
T ss_dssp GTTCSEEEEETTSGGGTTTCSSC-EEEEECHHHHHHHHHHHSCTTT--TTSCS-CCCSCSHHHHHHHHH----HHHHHHH
T ss_pred ccCCeEEEcCccccCCCCCCCce-EEEEecHHHHHHHHHHhccCCc--ccccC-ccHHHHHHHHhHhhh----HHHHHHH
Confidence 567899999999953 3677 9999998877776543211100 00111 111111222233332 3456667
Q ss_pred HHHHHHHHHHHHhhccCceEEeCCCCC-CCCceEEEEEcc-cChhHHHHHh
Q psy15216 262 ILFLQKRLYNGLMESIEEIYINGDMNN-RIPHNLNISFNF-IEGESLLMAI 310 (2602)
Q Consensus 262 ~~~l~~~l~~~L~~~~~g~~l~~~~~~-~~~~~~~~~~~~-~~~~~~~~~L 310 (2602)
..+++.++.+.|++ .++.+++.++. +...+..+.+.. ....++++.|
T Consensus 293 ~~~~a~~l~~~L~~--~g~~v~p~~~~~~~~li~~i~l~~~~~~~~~~~~l 341 (431)
T 3ht4_A 293 ALKGAIFTAAFLEK--LGMNTSPAWNAPRTDLIQSVQFDDKDRMIAFCQAI 341 (431)
T ss_dssp HHHHHHHHHHHHHH--HTCCEESCTTSCCSSSCCEEECCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CcCEecCCCCCCCccEEEEEEeCCHHHHHHHHHHH
Confidence 77888888888877 34555433222 222344455442 1233455555
|
| >2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A | Back alignment and structure |
|---|
Probab=99.67 E-value=1.7e-15 Score=200.40 Aligned_cols=318 Identities=13% Similarity=0.106 Sum_probs=207.4
Q ss_pred CCHHHH-H-HHHH---HHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhC-CCCCcEEEeCCHHHHHHHHHHhhhhhh
Q psy15216 1405 IDPRVV-D-KMIP---YLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIY-ADPREIIWTSGATESNNLAIKGAAHFY 1478 (2602)
Q Consensus 1405 ~~~~v~-e-al~~---~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g-~~~~~iv~t~gaT~al~~al~~l~~~~ 1478 (2602)
.++.++ + ++.+ .+....... . .+ ..+...+++++++++++ .++++|+|++|+++|++.++..+....
T Consensus 71 ~~p~v~~~~A~~~~~~~~~~~~~~~-~-~~-----~~~~~~~la~~la~~~~~~~~~~v~~~~~gseA~~~aik~a~~~~ 143 (449)
T 2cjg_A 71 NPPALVDDREFHAELMQAALNKPSN-S-DV-----YSVAMARFVETFARVLGDPALPHLFFVEGGALAVENALKAAFDWK 143 (449)
T ss_dssp SCHHHHTCHHHHHHHHHHHTCCCCT-T-TC-----CCHHHHHHHHHHHHHHCCTTCCEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCC-c-cc-----CCHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHHHh
Confidence 478899 8 9988 554421111 1 11 12346788899999997 567899999999999999998653111
Q ss_pred c---------c-CCCEEEEcCCCCcchHHHHHHHH------hCCc-----EEEEeccCC--CC--------CcChhHHHh
Q psy15216 1479 K---------K-RGKHIITVQTEHKSVLDSIRKLE------NDGF-----RVTYLKPKN--NG--------LITLSQLEE 1527 (2602)
Q Consensus 1479 ~---------~-~gd~Vlv~~~~~~s~~~~~~~~~------~~G~-----~v~~v~~~~--~~--------~id~d~l~~ 1527 (2602)
- + +|++|+++++.|+++...+..+. +.+. .+..++.+. .. ..++++|++
T Consensus 144 ~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~le~ 223 (449)
T 2cjg_A 144 SRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQARA 223 (449)
T ss_dssp HHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCCSCHHHHTTSCCCCCCEECCCCCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccCCCCEEEEECCCcCCcccchhhhcCCchhhcccCCCCCCCcEEEcCCCchhhccccchhhHHHHHHHHH
Confidence 1 1 28999999999887544221110 1122 455555433 11 245667999
Q ss_pred hcc---CCceEEEEeccccccccccC----hHHHHHHhhhcCCEEEEecccc-cCcc----cccCCCCCccEEEEccccc
Q psy15216 1528 KIC---SDTILVSVMLVNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKI----DINIQNYKVDLMSFSAHKI 1595 (2602)
Q Consensus 1528 ~i~---~~t~lv~l~~~~n~tG~~~~----l~~I~~ia~~~gi~vivD~a~~-~g~~----~~~l~~~~~D~~v~S~~K~ 1595 (2602)
++. +++++|++++++|++|...+ +++|.++|++||+++|+|++|+ +|.. .++.....+|++ +++|.
T Consensus 224 ~i~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~~~~di~--t~sK~ 301 (449)
T 2cjg_A 224 AFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTGTAWAYQQLDVAPDIV--AFGKK 301 (449)
T ss_dssp HHHHSTTTEEEEEECSEETTTTCEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEE--EECGG
T ss_pred HHHhcCCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccccCCCccCcceeecccCCCceEE--EecCc
Confidence 884 68899999888899997667 9999999999999999999998 4322 112223356876 45696
Q ss_pred cCCCceEEEEEecCCCCccccccccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---
Q psy15216 1596 YGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMES--- 1672 (2602)
Q Consensus 1596 ~gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~--- 1672 (2602)
+ + +|++++++++++.+.+...+... .. ...+.+...+.+..++|+.... +...++..+++++++++|.+.
T Consensus 302 l--~-iG~~~~~~~~~~~l~~~~~~~~~-~~-~t~~~n~~~~~aa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~ 374 (449)
T 2cjg_A 302 T--Q-VCGVMAGRRVDEVADNVFAVPSR-LN-STWGGNLTDMVRARRILEVIEA--EGLFERAVQHGKYLRARLDELAAD 374 (449)
T ss_dssp G--S-SEEEEECGGGGGSTTCTTTSTTS-SC-CSSSSCHHHHHHHHHHHHHHHH--HTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred c--c-EEEEEECHHHhhhhhhcccCCcc-cc-cCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHhh
Confidence 6 3 79999998877765442211110 11 1224456667777788875543 356677788888888888752
Q ss_pred CCc-EEEeCCCCCCCCceEEEEEec-CCcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCC
Q psy15216 1673 IEE-IYINGDMNNRIPHNLNISFNF-IEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGR 1748 (2602)
Q Consensus 1673 ~~g-l~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~ 1748 (2602)
.+. +....+ ...+..+.++. ....++...| +||.++++. .+++|++++.
T Consensus 375 ~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g-----------------------~~~iRi~~~~ 427 (449)
T 2cjg_A 375 FPAVVLDPRG----RGLMCAFSLPTTADRDELIRQLWQRAVIVLPAG-----------------------ADTVRFRPPL 427 (449)
T ss_dssp STTTSEEEEE----ETTEEEEECSSHHHHHHHHHHHHHTTEECEEET-----------------------TTEEEECCCT
T ss_pred CCCceeeEee----ccEEEEEEECChHHHHHHHHHHHHCCeEEecCC-----------------------CCEEEEECCC
Confidence 343 322211 12233333332 1234565555 799887642 1789999999
Q ss_pred CCCHHHHHHHHHHHHHh
Q psy15216 1749 FTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1749 ~~t~edid~li~~L~~~ 1765 (2602)
.+|++++++++++|++.
T Consensus 428 ~~t~e~i~~~l~~l~~~ 444 (449)
T 2cjg_A 428 TVSTAEIDAAIAAVRSA 444 (449)
T ss_dssp TCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999999874
|
| >4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.3e-15 Score=194.31 Aligned_cols=349 Identities=12% Similarity=0.044 Sum_probs=221.3
Q ss_pred CcccHHHHHHHHHhcCCCccccceeeeeceeeecc-CCCCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHH
Q psy15216 1365 SPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFK-DATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKAR 1443 (2602)
Q Consensus 1365 ~~~~~~~v~~aL~~~g~~~~~~ei~~iP~~~v~L~-~~~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr 1443 (2602)
+|+.+..+.+++++..-+..+..++ +|.+ +...+..+.|.++....++.... +. |. +.....++|
T Consensus 28 p~d~i~~l~~~~~~d~~~kinLgvG------~y~d~~g~~~vl~~Vk~A~~~~~~~~~~--~~--Y~----p~~G~p~lr 93 (420)
T 4h51_A 28 APDVIFDLAKRAAAAKGPKANLVIG------AYRDEQGRPYPLRVVRKAEQLLLDMNLD--YE--YL----PISGYQPFI 93 (420)
T ss_dssp CCCHHHHHHHHHHHCCSSCEECCSC------CCBCTTSCBCCCHHHHHHHHHHHHTTCC--CC--CC----CTTCCHHHH
T ss_pred CCChHHHHHHHHhcCCCCCEEeecC------cccCCCCCCCCCHHHHHHHHHHhcCCCC--CC--CC----CcCChHHHH
Confidence 3455667777777764444444444 2333 23345667888888777765321 10 11 112356788
Q ss_pred HHHHHHh-CC--CCCc--EEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEE-EEecc-C-
Q psy15216 1444 NEVAQLI-YA--DPRE--IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRV-TYLKP-K- 1515 (2602)
Q Consensus 1444 ~~ia~~~-g~--~~~~--iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v-~~v~~-~- 1515 (2602)
+++++++ |- ..+. .+-|.|+|.|+..++..+.....+|||+|++++|.|++|...++.+ |++. ...+. +
T Consensus 94 ~aia~~~~g~~~~~~~~~~~qt~ggtga~~~a~~~l~~~~~~pgd~V~ip~P~w~~y~~i~~~a---G~~~V~~~~~~~~ 170 (420)
T 4h51_A 94 DEAVKIIYGNTVELENLVAVQTLSGTGAVSLGAKLLTRVFDAETTPIYLSDPTWPNHYGVVKAA---GWKNICTYAYYDP 170 (420)
T ss_dssp HHHHHHHHC---CGGGEEEEEEEHHHHHHHHHHHHHTTTSCTTTSCEEEEESCCTHHHHHHHHT---TCCCEEEEECEEG
T ss_pred HHHHHHhcCCCccccccceeeecCchHHHHHHHHHHHHhcCCCCCEEEEecCCchhHHHHHHHc---CCeEEEeeccccc
Confidence 8888875 32 2223 3458899999998888776555689999999999999998887776 7653 33332 2
Q ss_pred CCCCcChhHHHhhc---cCCceEEEEeccccccccccC---hHHHHHHhhhcCCEEEEeccccc---Cccccc-------
Q psy15216 1516 NNGLITLSQLEEKI---CSDTILVSVMLVNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQAV---GKIDIN------- 1579 (2602)
Q Consensus 1516 ~~~~id~d~l~~~i---~~~t~lv~l~~~~n~tG~~~~---l~~I~~ia~~~gi~vivD~a~~~---g~~~~~------- 1579 (2602)
.++.+|.+.+.+.+ ++++++++++.|+||||..++ +++|+++|++|+++++.|+++.. +....+
T Consensus 171 ~~~~~d~~~~~~~l~~~~~~~~vll~~~p~NPtG~~~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~ 250 (420)
T 4h51_A 171 KTVSLNFEGMKKDILAAPDGSVFILHQCAHNPTGVDPSQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLF 250 (420)
T ss_dssp GGTEECHHHHHHHHHHSCSSCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHH
T ss_pred cccCCCHHHHHHHHhccCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhH
Confidence 34567888887766 477889999999999999998 77889999999999999999742 111100
Q ss_pred CCCCCccEEEEccccccCCCc--eEEEEEecCCCCccccccccCCccccCCCCCcchhHHHHHHHHHH--H----HHHHH
Q psy15216 1580 IQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFR--L----ARIEM 1651 (2602)
Q Consensus 1580 l~~~~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~--~----~~~~~ 1651 (2602)
......-+++.||+|.|+++| +|++++..+..+........-....+....+++..+...+...+. . ....+
T Consensus 251 ~~~~~~~i~~~s~SK~~~~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~r~~~s~~p~~~a~~~~~~l~d~~l~~~~~~~~ 330 (420)
T 4h51_A 251 ARRGIEVLLAQSFSKNMGLYSERAGTLSLLLKDKTKRADVKSVMDSLIREEYTCPPAHGARLAHLILSNNELRKEWEAEL 330 (420)
T ss_dssp HHTTCCCEEEEECTTTSCCGGGCEEEEEEECSCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred HhhCceEEEEeccccccccccCceEEEEecccCHHHHHHHHHHHHHhhhcccCcchHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 111123477789999888888 999999876544332211000000112234555555555555554 1 12346
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCc--EEEeCCCCCCCCceEEEEEecCCcHHHHHhc--CCEEEccccccCCCCCChhHH
Q psy15216 1652 KEELKRILFLQKRLYNGLMESIEE--IYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDIAVSSGSACTSASLEPSYV 1727 (2602)
Q Consensus 1652 ~~~~~~~~~l~~~l~~~L~~~~~g--l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~ 1727 (2602)
+.+++++..+++.+.+.|.+..+. +.... +....|.+.+.+.+. ++.| ++|.+.++
T Consensus 331 ~~m~~r~~~~R~~l~~~L~~~g~~~~~~~i~------~q~GmF~~~gls~e~-v~~L~e~~Vy~~~~------------- 390 (420)
T 4h51_A 331 SAMAERIRTMRRTVYDELLRLQTPGSWEHVI------NQIGMFSFLGLSKAQ-CEYCQNHNIFITVS------------- 390 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSSCCTHHH------HCCSSEEECCCCHHH-HHHHHHTTEECCTT-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCeec------CCCceEEecCcCHHH-HHHHHhCCEEEcCC-------------
Confidence 778889999999999999872111 10000 111235555555443 3344 67765421
Q ss_pred HHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1728 LRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1728 ~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
+ |||+.. .+.+.|++++++|.++
T Consensus 391 ------------g--Ris~Ag-l~~~ni~~~a~aI~~v 413 (420)
T 4h51_A 391 ------------G--RANMAG-LTHETALMLAQTINDA 413 (420)
T ss_dssp ------------C--EEEGGG-CCHHHHHHHHHHHHHH
T ss_pred ------------C--EEEecc-CCHHHHHHHHHHHHHH
Confidence 2 999865 4679999999999874
|
| >3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=6.4e-15 Score=195.67 Aligned_cols=329 Identities=10% Similarity=0.008 Sum_probs=208.0
Q ss_pred CCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccc---
Q psy15216 7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYK--- 83 (2602)
Q Consensus 7 ~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~--- 83 (2602)
+..++.+.+++.+.+......... .....+...+++++++++++.++++|+|++|+++|+..++.++.....
T Consensus 66 G~~~p~v~~A~~~~~~~~~~~~~~-----~~~~~~~~~~la~~l~~~~~~~~~~v~~~~gGseA~~~al~~~~~~~~~~g 140 (460)
T 3gju_A 66 GYGRQKIADAIATQAKNLAYYHAY-----VGHGTEASITLAKMIIDRAPKGMSRVYFGLSGSDANETNIKLIWYYNNVLG 140 (460)
T ss_dssp CBCCHHHHHHHHHHHHHHSCCCCC-----TTCCCHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHhccccccc-----cccCCHHHHHHHHHHHhhCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcC
Confidence 345799999999988764211111 011123567889999999887778999999999999999998861100
Q ss_pred -cCCCEEEEcCCCCcccHHHHHHHHh----------CCcEEEEeccCC-----CCccC--------hHHHHhhcc----C
Q psy15216 84 -KRGKHIITVQTEHKSVLDSIRKLEN----------DGFRVTYLKPKN-----NGLIT--------LSQLEEKIC----S 135 (2602)
Q Consensus 84 -~~gd~Vlv~~~~~~s~~~~~~~~~~----------~G~~v~~v~~~~-----~~~ld--------~e~l~~~i~----~ 135 (2602)
.+++.|++.++.|+.+......+.. ....+..++... +...+ +++|+++++ +
T Consensus 141 ~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~~~~~ 220 (460)
T 3gju_A 141 RPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEMILAEGPE 220 (460)
T ss_dssp CTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHHHHHHHHHHHHHHHHHCGG
T ss_pred CCCCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCCEEeCCCccccCCccccChhHHHHHHHHHHHHHHHhcCCC
Confidence 2468999999999987655544411 011344454322 11122 688998886 5
Q ss_pred CceEEEEecccCccccccc----HHHHHHHHHhcCCEEEEecccc-ccccc----ccCCCCCccEEEeccccccCC--CC
Q psy15216 136 DTILVSVMLVNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKID----INIQNYKVDLMSFSAHKIYGP--KG 204 (2602)
Q Consensus 136 ~tklv~i~~~~npTG~~~~----l~~I~~la~~~g~~livD~a~a-~g~~~----~dl~~~~~D~~~~S~~K~~Gp--~G 204 (2602)
++++|++..++|++|.+.+ +++|.++|++||+++|+|++|. +|... .+.....+|+++ ++|.++. -.
T Consensus 221 ~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t--~sK~l~gG~~~ 298 (460)
T 3gju_A 221 TIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRLGTMFGSDHYGIKPDLIT--IAKGLTSAYAP 298 (460)
T ss_dssp GEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCCCSEEE--ECGGGTTTSSC
T ss_pred CEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccccchHhhcCCCCCeee--eehhhcCCCCC
Confidence 6788888888888898776 9999999999999999999987 43221 111223467765 5695543 23
Q ss_pred cEEEEEecCCCCcccceecCCCccccccccCcchhHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHhhccCceEE
Q psy15216 205 IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARI--EMKEELKRILFLQKRLYNGLMESIEEIYI 282 (2602)
Q Consensus 205 ~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~--~~~~~~~~~~~l~~~l~~~L~~~~~g~~l 282 (2602)
+|++++++++++.+.+....+..-......+.+..+.++..++|+.... ..++..+....+++.+.+.+.+ .+.+..
T Consensus 299 lg~v~~~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~ 377 (460)
T 3gju_A 299 LSGVIVADRVWQVLVQGSDKLGSLGHGWTYSAHPICVAAGVANLELIDEMDLVTNAGETGAYFRAELAKAVGG-HKNVGE 377 (460)
T ss_dssp CEEEEEEHHHHHHHHHHHHHHCSCSCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTT-STTEEE
T ss_pred eEEEEECHHHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhc-CCCeEE
Confidence 7999999887776642100000000011234566677777788885432 2344444445555555555544 454443
Q ss_pred eCCCCCCCCceEEEEEcccC------------hhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEE
Q psy15216 283 NGDMNNRIPHNLNISFNFIE------------GESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRF 348 (2602)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~------------~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi 348 (2602)
..+. ..+..+.+.... ...+...+ +||.++++. . .+++||
T Consensus 378 ~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~---~-------------------~~~iRi 431 (460)
T 3gju_A 378 VRGD----GMLAAVEFVADKDDRVFFDASQKIGPQVATALAASGVIGRAMP---Q-------------------GDILGF 431 (460)
T ss_dssp EEEE----TTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECEECS---S-------------------SCEEEE
T ss_pred Eeee----eEEEEEEEccCccccccccchHHHHHHHHHHHHHCCeEEecCC---C-------------------CCEEEE
Confidence 3221 123334443211 22444544 788887643 1 278999
Q ss_pred ecCCCCCHHHHHHHHHHHHhh
Q psy15216 349 TIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 349 s~~~~~t~edid~li~~L~~~ 369 (2602)
+++...|++++++++++|++.
T Consensus 432 ~~~~~~t~e~i~~~l~~l~~~ 452 (460)
T 3gju_A 432 APPLCLTREQADIVVSKTADA 452 (460)
T ss_dssp CCCTTCCHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHH
Confidence 998889999999999999964
|
| >3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.3e-14 Score=192.00 Aligned_cols=324 Identities=13% Similarity=0.079 Sum_probs=195.6
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCC-
Q psy15216 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRG- 86 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~g- 86 (2602)
..++.+.+++.+.+.....+... ....+...+++++++++++...++|+|++|+++|+..++.++......+|
T Consensus 60 ~~~p~v~~A~~~~~~~~~~~~~~------~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~al~~~~~~~~~~G~ 133 (448)
T 3dod_A 60 HRKKELDDAIKKQLGKIAHSTLL------GMTNVPATQLAETLIDISPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIGK 133 (448)
T ss_dssp BSCHHHHHHHHHHHTTCSCCCCS------SSEEHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHhccCcccc------ccCCHHHHHHHHHHHHhCCCCCCEEEEeCchHHHHHHHHHHHHHHHHhhCC
Confidence 45899999999988753211111 11123567889999999977667999999999999999999872211144
Q ss_pred ---CEEEEcCCCCcccHHHHHHHHhC----------CcEEEEeccCCCCc-----------cChHHHHhhcc---CCceE
Q psy15216 87 ---KHIITVQTEHKSVLDSIRKLEND----------GFRVTYLKPKNNGL-----------ITLSQLEEKIC---SDTIL 139 (2602)
Q Consensus 87 ---d~Vlv~~~~~~s~~~~~~~~~~~----------G~~v~~v~~~~~~~-----------ld~e~l~~~i~---~~tkl 139 (2602)
|+|++.++.|++.......+... ...+..++.+..+. .|+++|+++++ +++++
T Consensus 134 ~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~ 213 (448)
T 3dod_A 134 PEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPYVYRSESGDPDECRDQCLRELAQLLEEHHEEIAA 213 (448)
T ss_dssp TTCCEEEEEC-----------------------------CEEECCCCCTTSSSCCHHHHHHHHHHHHHHHHHHHGGGEEE
T ss_pred CCCCEEEEECCCCCCccHHHHHhcCCccccccccCCCCCceEeCCCccccCCccchhhhhHHHHHHHHHHHHhCCCCEEE
Confidence 99999999998765443332110 11233444333222 24889999986 56778
Q ss_pred EEEeccc-Cccccccc----HHHHHHHHHhcCCEEEEecccc-cccc----cccCCCCCccEEEeccccccCC--CCcEE
Q psy15216 140 VSVMLVN-NEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKI----DINIQNYKVDLMSFSAHKIYGP--KGIGA 207 (2602)
Q Consensus 140 v~i~~~~-npTG~~~~----l~~I~~la~~~g~~livD~a~a-~g~~----~~dl~~~~~D~~~~S~~K~~Gp--~G~G~ 207 (2602)
|++..++ |++|.+.+ +++|.++|++||+++|+|++|+ +|.. ..+.....+|+++ ++|.+|+ -.+|+
T Consensus 214 vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~a~~~~~~~~di~t--~sK~l~~G~~~ig~ 291 (448)
T 3dod_A 214 LSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGKMFACEHENVQPDLMA--AGKGITGGYLPIAV 291 (448)
T ss_dssp EEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEE--ECGGGGTTSSCCEE
T ss_pred EEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEEeccccCCCcccchhhhhhcCCCCCEEE--ecccccCCcCceEE
Confidence 8888887 99998877 9999999999999999999987 3321 1122233467664 5695543 23799
Q ss_pred EEEecCCCCcccceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhh--ccCceEEeCC
Q psy15216 208 LYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLME--SIEEIYINGD 285 (2602)
Q Consensus 208 l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~--~~~g~~l~~~ 285 (2602)
+++++++++.+.+.......-......+.+..+.+++.++|+.... ++..++.+++.+++++.|.+ ..+.+....+
T Consensus 292 v~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 369 (448)
T 3dod_A 292 TFATEDIYKAFYDDYENLKTFFHGHSYTGNQLGCAVALENLALFES--ENIVEQVAEKSKKLHFLLQDLHALPHVGDIRQ 369 (448)
T ss_dssp EEEEHHHHHTTCSCGGGCCCCCCCCTTTTCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHTTSTTEEEEEE
T ss_pred EEECHHHHHHhhhccccCCcccccCCCCcCHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 9999887777654100000000011234566667777788875432 23444455555555555543 1343332211
Q ss_pred CCCCCCceEEEEEccc-C-----------hhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecC
Q psy15216 286 MNNRIPHNLNISFNFI-E-----------GESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIG 351 (2602)
Q Consensus 286 ~~~~~~~~~~~~~~~~-~-----------~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~ 351 (2602)
...+..+.++.. . ...+...| +||.++++. +++|++++
T Consensus 370 ----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~------------------------~~iRi~~~ 421 (448)
T 3dod_A 370 ----LGFMCGAELVRSKETKEPYPADRRIGYKVSLKMRELGMLTRPLG------------------------DVIAFLPP 421 (448)
T ss_dssp ----ETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECCEET------------------------TEEEECCC
T ss_pred ----eeEEEEEEEccCcccccccchhhHHHHHHHHHHHHCCcEEeccC------------------------CEEEEECC
Confidence 122333444321 1 13455555 788887541 67999988
Q ss_pred CCCCHHHHHHHHHHHHhh
Q psy15216 352 RFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 352 ~~~t~edid~li~~L~~~ 369 (2602)
...+++++++++++|++.
T Consensus 422 ~~~t~e~i~~~l~~l~~~ 439 (448)
T 3dod_A 422 LASTAEELSEMVAIMKQA 439 (448)
T ss_dssp TTCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 889999999999999974
|
| >3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.4e-14 Score=190.08 Aligned_cols=327 Identities=13% Similarity=0.092 Sum_probs=206.0
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhh-cc--
Q psy15216 1404 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFY-KK-- 1480 (2602)
Q Consensus 1404 ~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~-~~-- 1480 (2602)
..++.+.+++.+.++.....+.. + ..+...+++++++++++.+.+ |+||+|+|+|+..++..+.... ..
T Consensus 65 ~~~p~v~~A~~~~~~~~~~~~~~--~-----~~~~~~~la~~l~~~~~~~~~-v~~~~ggseA~~~al~~~~~~~~~~g~ 136 (452)
T 3n5m_A 65 YGRKELAEAAYKQLQTLSYFPMS--Q-----SHEPAIKLAEKLNEWLGGEYV-IFFSNSGSEANETAFKIARQYYAQKGE 136 (452)
T ss_dssp BCCHHHHHHHHHHHTTCCCCCTT--S-----EEHHHHHHHHHHHHHHTSCEE-EEEESSHHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCHHHHHHHHHHHHhcCCcccc--c-----CCHHHHHHHHHHHHhCCCCce-EEEeCchHHHHHHHHHHHHHHHHhcCC
Confidence 34789999999988753221111 1 124567889999999987666 9999999999999999876210 03
Q ss_pred -CCCEEEEcCCCCcchHHHHHHHHhC----------CcEEEEeccCCCCC---cC---------hhHHHhhcc----CCc
Q psy15216 1481 -RGKHIITVQTEHKSVLDSIRKLEND----------GFRVTYLKPKNNGL---IT---------LSQLEEKIC----SDT 1533 (2602)
Q Consensus 1481 -~gd~Vlv~~~~~~s~~~~~~~~~~~----------G~~v~~v~~~~~~~---id---------~d~l~~~i~----~~t 1533 (2602)
++++|++.++.|+++......+... ...+..++...... -| +++|+++++ +++
T Consensus 137 ~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~ 216 (452)
T 3n5m_A 137 PHRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIYDVECVKEVDRVMTWELSETI 216 (452)
T ss_dssp TTCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCCTTTSTTTTTSCGGGCHHHHHHHHHHHHHCGGGE
T ss_pred CCCCEEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCccccCccCCchhhHHHHHHHHHHHHHHhcCCCCE
Confidence 6899999999998865444333110 01233444321111 12 899999997 667
Q ss_pred eEEEEecc-ccccccccC----hHHHHHHhhhcCCEEEEecccc-cCcc----cccCCCCCccEEEEccccccCC--Cce
Q psy15216 1534 ILVSVMLV-NNEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKI----DINIQNYKVDLMSFSAHKIYGP--KGI 1601 (2602)
Q Consensus 1534 ~lv~l~~~-~n~tG~~~~----l~~I~~ia~~~gi~vivD~a~~-~g~~----~~~l~~~~~D~~v~S~~K~~gp--~G~ 1601 (2602)
++|+++.+ +| +|.+.| +++|.++|++||+++|+|++|+ +|.. ..+.....+|+++ ++|.+++ -.+
T Consensus 217 ~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~~~~~~~~~~di~t--~sK~l~~G~~~i 293 (452)
T 3n5m_A 217 AAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISDEVICGFGRTGKAFGFMNYDVKPDIIT--MAKGITSAYLPL 293 (452)
T ss_dssp EEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTCCCSEEE--ECGGGGTTSSCC
T ss_pred EEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEecchhCCCcccccchhhhcCCCCCEEe--ecccccCCCcce
Confidence 88888888 89 999887 9999999999999999999986 4321 1222333467765 5694432 347
Q ss_pred EEEEEecCCCCccccccccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---CCcEEE
Q psy15216 1602 GALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMES---IEEIYI 1678 (2602)
Q Consensus 1602 G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~---~~gl~i 1678 (2602)
|++++++++++.+.+.......... ...+.+...+++..++|+.... +...++.+++.+++++.|.+. .+.+..
T Consensus 294 g~~~~~~~i~~~~~~~~~~~~~~~~-~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 370 (452)
T 3n5m_A 294 SATAVKREIYEAFKGKGEYEFFRHI-NTFGGNPAACALALKNLEIIEN--ENLIERSAQMGSLLLEQLKEEIGEHPLVGD 370 (452)
T ss_dssp EEEEEEHHHHGGGCSSSTTCSCCCC-CSSTTCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHTTCTTEEE
T ss_pred EEEEECHHHHHHHhhccCCCCcccc-CCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHhcCCCeEE
Confidence 9999998877666431000000001 1123455566666677775433 334455555555665555431 344433
Q ss_pred eCCCCCCCCceEEEEEecC-C---------cHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEec
Q psy15216 1679 NGDMNNRIPHNLNISFNFI-E---------GESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTI 1746 (2602)
Q Consensus 1679 ~~~~~~~~~~~~~~~~~~~-~---------~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~ 1746 (2602)
.... ..+..+.+... . ...+...| +||.++++..+... ..+++||++
T Consensus 371 ~~~~----g~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~-----------------~~~~iRi~~ 429 (452)
T 3n5m_A 371 IRGK----GLLVGIELVNDKETKEPIDNDKIASVVNACKEKGLIIGRNGMTTAG-----------------YNNILTLAP 429 (452)
T ss_dssp EEES----SSCEEEEEEEETTTTEECCHHHHHHHHHHHHHTTEECEECTTSSTT-----------------CCCEEEECC
T ss_pred EEEE----EEEEEEEEecCCcccCCCCHHHHHHHHHHHHHCCcEEeecCcccCC-----------------CCCEEEEEC
Confidence 3111 12233333211 0 12344444 89999987765332 137899999
Q ss_pred CCCCCHHHHHHHHHHHHHh
Q psy15216 1747 GRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1747 ~~~~t~edid~li~~L~~~ 1765 (2602)
+...|++++++++++|++.
T Consensus 430 ~~~~t~e~i~~~l~~l~~~ 448 (452)
T 3n5m_A 430 PLVISSEEIAFVIGTLKTA 448 (452)
T ss_dssp CTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9889999999999999874
|
| >3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.1e-15 Score=201.87 Aligned_cols=322 Identities=13% Similarity=0.046 Sum_probs=212.1
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhccccc---cc
Q psy15216 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFY---KK 84 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~---~~ 84 (2602)
-.+|.+.+++.+.+........ +....+...+++++++++++.+.++|+|++|+++|++.++..+.... -.
T Consensus 91 h~~p~v~~A~~~~~~~~~~~~~------~~~~~~~~~~L~e~la~~~~~~~~~v~~~~sGseA~~~Alk~a~~~~~~~g~ 164 (457)
T 3tfu_A 91 HGHPALDQALTTQLRVMNHVMF------GGLTHEPAARLAKLLVDITPAGLDTVFFSDSGSVSVEVAAKMALQYWRGRGL 164 (457)
T ss_dssp BTCHHHHHHHHHHHHHCSCCCS------SSEECHHHHHHHHHHHHHSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHhccCccc------cccCCHHHHHHHHHHHHhCCCCcCEEEEeCcHHHHHHHHHHHHHHHHHhcCC
Confidence 4689999999998876322110 11122456789999999998777899999999999999998876110 00
Q ss_pred CC-CEEEEcCCCCcccHHHHHHHH-----------hCCcEEEEeccCC--CCccChHHHHhhcc---CCceEEEEec-cc
Q psy15216 85 RG-KHIITVQTEHKSVLDSIRKLE-----------NDGFRVTYLKPKN--NGLITLSQLEEKIC---SDTILVSVML-VN 146 (2602)
Q Consensus 85 ~g-d~Vlv~~~~~~s~~~~~~~~~-----------~~G~~v~~v~~~~--~~~ld~e~l~~~i~---~~tklv~i~~-~~ 146 (2602)
+| +.|++.++.|++.......+. .....+..++... ....|+++|+++++ +++++|++.. ++
T Consensus 165 ~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~~le~~l~~~~~~~aavi~ep~~~ 244 (457)
T 3tfu_A 165 PGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQLAQHAGELAAVVVEPVVQ 244 (457)
T ss_dssp TTCCEEEEETTCCCCSSHHHHTTSCCC----------CCCCEEECCCCSSCCHHHHHHHHHHHHHHGGGEEEEEECSSEE
T ss_pred CCCceEEEEcCCcCCccHHhhcccCCcccccccccCCCCCceEecCCCcccCHHHHHHHHHHHHhCCCCEEEEEEeCCCc
Confidence 44 589998888887644333220 0011223333322 22358899999997 6788999999 99
Q ss_pred Cccccccc----HHHHHHHHHhcCCEEEEecccc-ccccc----ccCCCCCccEEEeccccccCC--CCcEEEEEecCCC
Q psy15216 147 NEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKID----INIQNYKVDLMSFSAHKIYGP--KGIGALYIRRNPR 215 (2602)
Q Consensus 147 npTG~~~~----l~~I~~la~~~g~~livD~a~a-~g~~~----~dl~~~~~D~~~~S~~K~~Gp--~G~G~l~~~~~~~ 215 (2602)
|++|.+.| +++|.++|++||+++|+|++|. +|... .+.....+|++ +++|.+|. ..+|+++++++++
T Consensus 245 ~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~gr~G~~~a~~~~~~~pdii--t~sK~l~gG~~~lG~v~~~~~i~ 322 (457)
T 3tfu_A 245 GAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADHAGVSPDIM--CVGKALTGGYLSLAATLCTADVA 322 (457)
T ss_dssp CTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEE--EECGGGGTTSSCCEEEEEEHHHH
T ss_pred CCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCccCCccccchhHhHhcCCCceEE--EEChhhhCCCcceEEEEEcHHHH
Confidence 99999887 9999999999999999999986 33211 12223346777 66794432 2489999998877
Q ss_pred CcccceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhc--cCceEEeCCCCCCCCce
Q psy15216 216 TRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMES--IEEIYINGDMNNRIPHN 293 (2602)
Q Consensus 216 ~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~--~~g~~l~~~~~~~~~~~ 293 (2602)
+.+.....+.. ......+.+..+.++..++|+.... +...++.+++.+++++.|.+. .+++...... ..+
T Consensus 323 ~~~~~~~~~~~--~~~~t~~~n~~a~aaa~aaL~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~~v~~vr~~----G~~ 394 (457)
T 3tfu_A 323 HTISAGAAGAL--MHGPTFMANPLACAVSVASVELLLG--QDWRTRITELAAGLTAGLDTARALPAVTDVRVC----GAI 394 (457)
T ss_dssp HHHHHSSSCSC--CCCCTTTTCHHHHHHHHHHHHHHHT--SCHHHHHHHHHHHHHHHHGGGGGSTTEEEEEEC----SSC
T ss_pred HHhhccCCCce--eEecCCCcCHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHHhcCCCeeeeecC----CeE
Confidence 66631100000 0001234566677777788875443 355667777778888887652 2444332211 233
Q ss_pred EEEEEcc-cChhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 294 LNISFNF-IEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 294 ~~~~~~~-~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
..+.++. .+..++...| +||.+++. .+++|+++....|++|+++++++|++.
T Consensus 395 ~~i~l~~~~~~~~~~~~l~~~Gv~v~~~------------------------~~~lRi~p~~~~t~eei~~~l~~L~~~ 449 (457)
T 3tfu_A 395 GVIECDRPVDLAVATPAALDRGVWLRPF------------------------RNLVYAMPPYICTPAEITQITSAMVEV 449 (457)
T ss_dssp EEEEESSCCCHHHHHHHHHHTTEECCCB------------------------TTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred EEEEECCcccHHHHHHHHHHCCeEEEec------------------------CCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4445543 2355666666 78888742 167999988888999999999999974
|
| >4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=5.2e-15 Score=196.52 Aligned_cols=317 Identities=15% Similarity=0.078 Sum_probs=203.9
Q ss_pred CCCHHHHHHHHHHHhhhc-CCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccc---
Q psy15216 8 PIDPRVVDKMIPYLRVQF-GNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYK--- 83 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~-~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~--- 83 (2602)
..+|.+.+++.+.+.... .++.. ....+...+++++++++++.+.++|+|++|+++|+..++.++.....
T Consensus 66 ~~~p~v~~A~~~~~~~~~~~~~~~------~~~~~~~~~la~~l~~~~~~~~~~v~~~~ggseA~~~al~~~~~~~~~~g 139 (459)
T 4a6r_A 66 YGRKDFAEAARRQMEELPFYNTFF------KTTHPAVVELSSLLAEVTPAGFDRVFYTNSGSESVDTMIRMVRRYWDVQG 139 (459)
T ss_dssp BCCHHHHHHHHHHHHHCSCCCTTS------SSCCHHHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHhcccccccc------ccCCHHHHHHHHHHHHhCCCCCCEEEEeCchHHHHHHHHHHHHHHHHhcC
Confidence 458999999999987632 11111 11234567889999999988788999999999999999999872100
Q ss_pred -cCCCEEEEcCCCCcccHHHHHHHHhC----------CcEEEEeccCC-----CCccC--------hHHHHhhcc----C
Q psy15216 84 -KRGKHIITVQTEHKSVLDSIRKLEND----------GFRVTYLKPKN-----NGLIT--------LSQLEEKIC----S 135 (2602)
Q Consensus 84 -~~gd~Vlv~~~~~~s~~~~~~~~~~~----------G~~v~~v~~~~-----~~~ld--------~e~l~~~i~----~ 135 (2602)
.+++.|++.++.|+++......+... ...+..++... ++ .| +++|+++++ +
T Consensus 140 ~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~d~~~~~~~~~~~le~~i~~~~~~ 218 (459)
T 4a6r_A 140 KPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKD-MTPDEFGVVAARWLEEKILEIGAD 218 (459)
T ss_dssp CTTCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSSEEEECCCCHHHHCTT-CCHHHHHHHHHHHHHHHHHHHCGG
T ss_pred CCCCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCCCEEeCCCccccCCcc-cCHHHHHHHHHHHHHHHHHHcCCC
Confidence 15789999999999877655544111 01233444221 11 34 788988886 4
Q ss_pred CceEEEEecccCccccccc----HHHHHHHHHhcCCEEEEecccc-ccccc----ccCCCCCccEEEeccccccCC--CC
Q psy15216 136 DTILVSVMLVNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKID----INIQNYKVDLMSFSAHKIYGP--KG 204 (2602)
Q Consensus 136 ~tklv~i~~~~npTG~~~~----l~~I~~la~~~g~~livD~a~a-~g~~~----~dl~~~~~D~~~~S~~K~~Gp--~G 204 (2602)
++++|++..+++++|.+.+ +++|.++|++||+++|+|++|. +|... .+.....+|+++ ++|.++. -.
T Consensus 219 ~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~pdi~t--~sK~l~gg~~~ 296 (459)
T 4a6r_A 219 KVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTGEWFGHQHFGFQPDLFT--AAKGLSSGYLP 296 (459)
T ss_dssp GEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEE--ECGGGGTTSSC
T ss_pred CEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccccchHhhcCCCCCeee--hhhhhcCCCCC
Confidence 5677777777777888777 9999999999999999999986 33221 111223467775 5695443 23
Q ss_pred cEEEEEecCCCCcccc---eecCCCccccccccCcchhHHHHHHHHHHHHHH-h-HHHHH-HHHHHHHHHHHHHHhhccC
Q psy15216 205 IGALYIRRNPRTRIEA---QIHGGGHEYGLRSGTLATHQIVGMGEAFRLARI-E-MKEEL-KRILFLQKRLYNGLMESIE 278 (2602)
Q Consensus 205 ~G~l~~~~~~~~~l~~---~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~-~-~~~~~-~~~~~l~~~l~~~L~~~~~ 278 (2602)
+|++++++++++.+.+ ... ....+.+..+.+++.++|+.... . .++.. +....+++.+.+.|.. .+
T Consensus 297 lg~v~~~~~i~~~~~~~~~~~~-------~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~ 368 (459)
T 4a6r_A 297 IGAVFVGKRVAEGLIAGGDFNH-------GFTYSGHPVCAAVAHANVAALRDEGIVQRVKDDIGPYMQKRWRETFSR-FE 368 (459)
T ss_dssp CEEEEECHHHHHHHHHHCTTHH-------HHHHCSCHHHHHHHHHHHHHHHHTCHHHHHHHTHHHHHHHHHHHHHTT-CT
T ss_pred ccceeeCHHHHHHhhcCCCccc-------CCCCCCCHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhc-CC
Confidence 8999999887776652 111 01234566667777788875432 1 33333 3444444444444443 45
Q ss_pred ceEEeCCCCCCCCceEEEEEcccC------------hhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCC
Q psy15216 279 EIYINGDMNNRIPHNLNISFNFIE------------GESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHS 344 (2602)
Q Consensus 279 g~~l~~~~~~~~~~~~~~~~~~~~------------~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~ 344 (2602)
.+....+. ..+..+.+.... ...+...+ +||.++++. +
T Consensus 369 ~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g------------------------~ 420 (459)
T 4a6r_A 369 HVDDVRGV----GMVQAFTLVKNKAKRELFPDFGEIGTLCRDIFFRNNLIMRACG------------------------D 420 (459)
T ss_dssp TEEEEEEE----TTEEEEEECSBTTTTBCCSSTTHHHHHHHHHHHHTTEECEEET------------------------T
T ss_pred CeEEEEEE----EEEEEEEEecCccccccccchHHHHHHHHHHHHHCCeEEecCC------------------------C
Confidence 44433221 123334443211 23444544 788887541 5
Q ss_pred eEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 345 SIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 345 ~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
++||+++...+++++++++++|++.
T Consensus 421 ~iRi~~~~~~t~e~i~~~l~~l~~~ 445 (459)
T 4a6r_A 421 HIVSAPPLVMTRAEVDEMLAVAERC 445 (459)
T ss_dssp EEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 7999998889999999999999974
|
| >4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A | Back alignment and structure |
|---|
Probab=99.65 E-value=3.5e-16 Score=192.34 Aligned_cols=218 Identities=15% Similarity=0.136 Sum_probs=139.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcCccceE-EEEEcCCCCHHHHHHHHHHHHHcCCceEEEechhHHHHHHhhhccCcccceEE
Q psy15216 743 IEISAQIFITLKKIAENAVNNRIFGA-VITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFA 821 (2602)
Q Consensus 743 ~ev~a~~L~~l~~~a~~~~~~~~~~~-ViTVPa~f~~~qr~~~~~Aa~~AGl~~~~li~EPtAAAl~y~~~~~~~~~~vl 821 (2602)
.++++.+|+.+++.+.... .++ .+++..+ ...++...++.|+||+|+++++..... ....
T Consensus 36 ~e~a~~vl~~~~~~a~~~~----~~~~~~a~t~~------------~~~a~~~~~~~Vne~~aha~a~~~~~~---~~~~ 96 (276)
T 4ehu_A 36 TTGPSRVLEKLYGKTGLAR----EDIKKVVVTGY------------GRMNYSDADKQISELSCHARGVNFIIP---ETRT 96 (276)
T ss_dssp SSHHHHHHHHHHHHHCCCG----GGEEEEEEEST------------TGGGCCSCSEECCHHHHHHHHHHHHST---TCCE
T ss_pred HHHHHHHHHHHHHHCCCcc----hhccccccCch------------HHHHhhCCCcccchHHHHHHHHHHhCC---CCCe
Confidence 3566677777777664332 222 2222221 124677889999999999998766543 3457
Q ss_pred EEEeCCceEEEEEEEEECCEEEEEEEecCCCCcchHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHH--Hcccccc
Q psy15216 822 VYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKE--LLSYQSS 899 (2602)
Q Consensus 822 V~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~l~~~~e~~K~--~LS~~~~ 899 (2602)
|+|+|||+++++++. .++.+++....++...|+.+|++.+.+++...+... ..+ +.++|. .+++...
T Consensus 97 vl~lgG~~~~~~~~~-~~g~~~~~~~~~~~~~g~G~f~d~~a~~l~~~~~~~-------~~~---~~~a~~~~~i~~~~~ 165 (276)
T 4ehu_A 97 IIDIGGQDAKVLKLD-NNGRLLNFLMNDKCAAGTGRFLDVMAKIIEVDVSEL-------GSI---SMNSQNEVSISSTCT 165 (276)
T ss_dssp EEEECSSCEEEEEEC-TTSCEEEEEEECSCSTTSHHHHHHHHHHHTCCGGGH-------HHH---HTTCSSCCCCCCCSH
T ss_pred EEEEcCCCceEEEEE-ecCceEEEEeCCCcCcchhhHHHHHHHHhccChhhh-------HHH---HhcCCCCCCcCCccc
Confidence 999999999999885 577888999999999999999999988875443210 000 000000 0000000
Q ss_pred eEEEEEecCCceEEEEeCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccceEEEecCccchHHHHHHHHhhccCcccC
Q psy15216 900 VKLNVKLSDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLT 979 (2602)
Q Consensus 900 ~~~~i~~~~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~a~~~~~~i~~V~LvGG~sr~P~v~~~l~~~f~~~~~~ 979 (2602)
. +..-......-.....++++..+.+.+.+.+.....+. ..++.|+|+||.+++|.||+.+++.|+.++..
T Consensus 166 ~-----f~~s~~~~~~~~~~~~~di~a~~~~~v~~~l~~~~~~~----~~~~~vvl~GGva~n~~lr~~l~~~~g~~~~~ 236 (276)
T 4ehu_A 166 V-----FAESEVISHLSENAKIEDIVAGIHTSVAKRVSSLVKRI----GVQRNVVMVGGVARNSGIVRAMAREINTEIIV 236 (276)
T ss_dssp H-----HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHH----CCCSSEEEESGGGGCHHHHHHHHHHHTSCEEC
T ss_pred h-----hhhhHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHhc----ccCCeEEEecCccchHHHHHHHHHHHCCCeee
Confidence 0 00000000000001124555555555555544444433 46788999999999999999999999999999
Q ss_pred cCCcchHhHHHHHHHhHHhc
Q psy15216 980 SIDPDKAVVFGAAIQANFLS 999 (2602)
Q Consensus 980 ~~~p~~aVa~GAa~~a~~l~ 999 (2602)
+.||++++|+|||++|....
T Consensus 237 p~~p~~~~A~GAAl~A~~~~ 256 (276)
T 4ehu_A 237 PDIPQLTGALGAALYAFDEA 256 (276)
T ss_dssp CSSGGGHHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHH
Confidence 99999999999999996543
|
| >3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.64 E-value=3e-15 Score=197.81 Aligned_cols=308 Identities=12% Similarity=0.109 Sum_probs=196.6
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCC
Q psy15216 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK 87 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd 87 (2602)
..+|.+.+++.+.+.....+ . + +.+...+++++++++++ .+++|+|++|+|+|++.++..+.. ..+++
T Consensus 71 ~~~p~v~~a~~~~~~~~~~~--~--~-----~~~~~~~l~~~la~~~~-~~~~v~~~~sGsea~~~ai~~a~~--~~~~~ 138 (434)
T 3l44_A 71 HAHPHITKAITTAAENGVLY--G--T-----PTALEVKFAKMLKEAMP-ALDKVRFVNSGTEAVMTTIRVARA--YTGRT 138 (434)
T ss_dssp BTCHHHHHHHHHHHHHCSCC--S--S-----CCHHHHHHHHHHHHHCT-TCSEEEEESSHHHHHHHHHHHHHH--HHCCC
T ss_pred CCCHHHHHHHHHHHHhCcCC--C--C-----CCHHHHHHHHHHHHhCC-CCCEEEEeCchHHHHHHHHHHHHH--hhCCC
Confidence 35899999999988763111 0 1 12356778889999987 678999999999999999988761 13678
Q ss_pred EEEEcCCCCcccHHHHHHHHhCCc-----------------EEEEeccCCCCccChHHHHhhcc---CCceEEEEecccC
Q psy15216 88 HIITVQTEHKSVLDSIRKLENDGF-----------------RVTYLKPKNNGLITLSQLEEKIC---SDTILVSVMLVNN 147 (2602)
Q Consensus 88 ~Vlv~~~~~~s~~~~~~~~~~~G~-----------------~v~~v~~~~~~~ld~e~l~~~i~---~~tklv~i~~~~n 147 (2602)
+|++.++.|+++......+...+. .+..++. .|+++|+++++ +++++|+++.++|
T Consensus 139 ~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~~~vi~ep~~~ 213 (434)
T 3l44_A 139 KIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVITVPF-----NNVETLKEALDKWGHEVAAILVEPIVG 213 (434)
T ss_dssp EEEEETTCCCCSSGGGGBC-------CCCBSSTTCCHHHHTTEEEECT-----TCHHHHHHHHHHHGGGEEEEEECSSBC
T ss_pred EEEEEcCccCCCcHHHHhhcCCcccccCCCCcCCCCCcCCCceEecCc-----ccHHHHHHHHHhCCCCEEEEEEcCCCC
Confidence 999999999876433222111011 1112221 18999999886 4677888888888
Q ss_pred ccccccc----HHHHHHHHHhcCCEEEEeccccc---ccc-cccCCCCCccEEEeccccccC-CCCcEEEEEecCCCCcc
Q psy15216 148 EIGVIQP----ILEIGELCRSKGVIFHCDAAQAV---GKI-DINIQNYKVDLMSFSAHKIYG-PKGIGALYIRRNPRTRI 218 (2602)
Q Consensus 148 pTG~~~~----l~~I~~la~~~g~~livD~a~a~---g~~-~~dl~~~~~D~~~~S~~K~~G-p~G~G~l~~~~~~~~~l 218 (2602)
++|.+.| +++|.++|++||+++|+|++|.. |.. ..+.....+|++ +++|.+| +-.+|++++++++++.+
T Consensus 214 ~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~~~g~~~~~~~~~~~~di~--t~sK~~~~G~~iG~~~~~~~i~~~~ 291 (434)
T 3l44_A 214 NFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAFRFMYGGAQDLLGVTPDLT--ALGKVIGGGLPIGAYGGKKEIMEQV 291 (434)
T ss_dssp TTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTSSSSCHHHHHTCCCSEE--EEEGGGGTTSSCEEEEECHHHHTTB
T ss_pred CCCCccCCHHHHHHHHHHHHHcCCEEEEeccccceeccccHHHHHcCCCCCee--ehhhhhcCCcCeeeEEEcHHHHHhh
Confidence 8888888 99999999999999999999962 111 011122345655 5679554 22389999998887776
Q ss_pred cceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhc---cCceEEeCCCCCCCCceEE
Q psy15216 219 EAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMES---IEEIYINGDMNNRIPHNLN 295 (2602)
Q Consensus 219 ~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~---~~g~~l~~~~~~~~~~~~~ 295 (2602)
.+... .......+.+..+.+++.++++.... ++..++.+++.+++++.|.+. .+.+..... ...++.
T Consensus 292 ~~~~~----~~~~~t~~~~~~a~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~----~g~~~~ 361 (434)
T 3l44_A 292 APLGP----AYQAGTMAGNPASMASGIACLEVLQQ--EGLYEKLDELGATLEKGILEQAAKHNIDITLNR----LKGALT 361 (434)
T ss_dssp TTTSS----BCCCCTTTTCHHHHHHHHHHHHHHTS--TTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEE----ETTEEE
T ss_pred ccCCC----cccCCCCCcCHHHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEe----eccEEE
Confidence 54210 00111335666777777778875433 345556666666666666541 222111111 123344
Q ss_pred EEEcccC--------------hhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHH
Q psy15216 296 ISFNFIE--------------GESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEI 359 (2602)
Q Consensus 296 ~~~~~~~--------------~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edi 359 (2602)
+.+.... ...+...| +||.++++.. +.+|+++ ..|++|+
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-----------------------~~~rl~~--~~t~e~i 416 (434)
T 3l44_A 362 VYFTTNTIEDYDAAQDTDGEMFGKFFKLMLQEGVNLAPSKY-----------------------EAWFLTT--EHTKEDI 416 (434)
T ss_dssp EEESSSCCCSHHHHHHSCHHHHHHHHHHHHHTTEECCSSTT-----------------------CCEECCT--TCCHHHH
T ss_pred EEEecCcccchhhccccCHHHHHHHHHHHHHCCeEEeecCC-----------------------CcEEEec--ccCHHHH
Confidence 4442111 13455555 7888875531 4588864 4699999
Q ss_pred HHHHHHHHhh
Q psy15216 360 DFTIKLLKMK 369 (2602)
Q Consensus 360 d~li~~L~~~ 369 (2602)
++++++|++.
T Consensus 417 ~~~l~~l~~~ 426 (434)
T 3l44_A 417 EYTIEAVGRA 426 (434)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999974
|
| >3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=2.1e-14 Score=190.09 Aligned_cols=324 Identities=13% Similarity=0.083 Sum_probs=192.4
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCC-
Q psy15216 1404 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRG- 1482 (2602)
Q Consensus 1404 ~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~g- 1482 (2602)
..++.+.+++.+.++....+... .+ ..+...+++++++++++.+.++|+|++|+++|+..++..+.....++|
T Consensus 60 ~~~p~v~~A~~~~~~~~~~~~~~-~~-----~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~al~~~~~~~~~~G~ 133 (448)
T 3dod_A 60 HRKKELDDAIKKQLGKIAHSTLL-GM-----TNVPATQLAETLIDISPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIGK 133 (448)
T ss_dssp BSCHHHHHHHHHHHTTCSCCCCS-SS-----EEHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHhccCcccc-cc-----CCHHHHHHHHHHHHhCCCCCCEEEEeCchHHHHHHHHHHHHHHHHhhCC
Confidence 34789999999988764211111 11 123467888999999876667999999999999999998873211244
Q ss_pred ---CEEEEcCCCCcchHHHHHHHHhC----------CcEEEEeccCCCCCc-----------ChhHHHhhcc---CCceE
Q psy15216 1483 ---KHIITVQTEHKSVLDSIRKLEND----------GFRVTYLKPKNNGLI-----------TLSQLEEKIC---SDTIL 1535 (2602)
Q Consensus 1483 ---d~Vlv~~~~~~s~~~~~~~~~~~----------G~~v~~v~~~~~~~i-----------d~d~l~~~i~---~~t~l 1535 (2602)
|+|++.++.|+++......+... ...+..++.+..+.. |+++|++++. +++++
T Consensus 134 ~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~ 213 (448)
T 3dod_A 134 PEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPYVYRSESGDPDECRDQCLRELAQLLEEHHEEIAA 213 (448)
T ss_dssp TTCCEEEEEC-----------------------------CEEECCCCCTTSSSCCHHHHHHHHHHHHHHHHHHHGGGEEE
T ss_pred CCCCEEEEECCCCCCccHHHHHhcCCccccccccCCCCCceEeCCCccccCCccchhhhhHHHHHHHHHHHHhCCCCEEE
Confidence 99999999998765433322110 012233443322222 4889999987 56678
Q ss_pred EEEeccc-cccccccC----hHHHHHHhhhcCCEEEEecccc-cCcc----cccCCCCCccEEEEccccccCC--CceEE
Q psy15216 1536 VSVMLVN-NEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKI----DINIQNYKVDLMSFSAHKIYGP--KGIGA 1603 (2602)
Q Consensus 1536 v~l~~~~-n~tG~~~~----l~~I~~ia~~~gi~vivD~a~~-~g~~----~~~l~~~~~D~~v~S~~K~~gp--~G~G~ 1603 (2602)
|++..++ |++|.+.| +++|.++|++||+++|+|++|+ +|.. ..+.....+|+++ ++|.+|+ -.+|+
T Consensus 214 vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~a~~~~~~~~di~t--~sK~l~~G~~~ig~ 291 (448)
T 3dod_A 214 LSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGKMFACEHENVQPDLMA--AGKGITGGYLPIAV 291 (448)
T ss_dssp EEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEE--ECGGGGTTSSCCEE
T ss_pred EEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEEeccccCCCcccchhhhhhcCCCCCEEE--ecccccCCcCceEE
Confidence 8888887 89998777 9999999999999999999987 3321 1222233467665 5694432 13799
Q ss_pred EEEecCCCCccccccccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCCcEEEeCC
Q psy15216 1604 LYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLME--SIEEIYINGD 1681 (2602)
Q Consensus 1604 l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~--~~~gl~i~~~ 1681 (2602)
+++++++++.+.+..............+.+...+.+..++|+.... ++..++.+++.+++++.|.+ ..+.+.....
T Consensus 292 v~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 369 (448)
T 3dod_A 292 TFATEDIYKAFYDDYENLKTFFHGHSYTGNQLGCAVALENLALFES--ENIVEQVAEKSKKLHFLLQDLHALPHVGDIRQ 369 (448)
T ss_dssp EEEEHHHHHTTCSCGGGCCCCCCCCTTTTCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHTTSTTEEEEEE
T ss_pred EEECHHHHHHhhhccccCCcccccCCCCcCHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 9999887666654100000000011223455566666677775433 23344445555555555543 1343332211
Q ss_pred CCCCCCceEEEEEecC-C-----------cHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecC
Q psy15216 1682 MNNRIPHNLNISFNFI-E-----------GESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIG 1747 (2602)
Q Consensus 1682 ~~~~~~~~~~~~~~~~-~-----------~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~ 1747 (2602)
...+..+.++.. . ...+...| +||.++++. +++||+++
T Consensus 370 ----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~------------------------~~iRi~~~ 421 (448)
T 3dod_A 370 ----LGFMCGAELVRSKETKEPYPADRRIGYKVSLKMRELGMLTRPLG------------------------DVIAFLPP 421 (448)
T ss_dssp ----ETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECCEET------------------------TEEEECCC
T ss_pred ----eeEEEEEEEccCcccccccchhhHHHHHHHHHHHHCCcEEeccC------------------------CEEEEECC
Confidence 112233333321 1 13455555 788887541 67999998
Q ss_pred CCCCHHHHHHHHHHHHHh
Q psy15216 1748 RFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1748 ~~~t~edid~li~~L~~~ 1765 (2602)
...|++++++++++|++.
T Consensus 422 ~~~t~e~i~~~l~~l~~~ 439 (448)
T 3dod_A 422 LASTAEELSEMVAIMKQA 439 (448)
T ss_dssp TTCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 889999999999999974
|
| >4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.64 E-value=3.9e-14 Score=187.33 Aligned_cols=318 Identities=13% Similarity=0.060 Sum_probs=200.8
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCC-CCcEEEeCCHHHHHHHHHHhcccccccCC
Q psy15216 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYAD-PREIIWTSGATESNNLAIKGAAHFYKKRG 86 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~-~~~Iv~t~g~T~al~~~~~~l~~~~~~~g 86 (2602)
..++.+.+++.+.+.....+.. .....+...+++++++++++.+ +++|+|++|+|+|++.++..+.. ...+
T Consensus 80 h~~p~v~~A~~~~~~~~~~~~~------~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~alk~a~~--~~g~ 151 (453)
T 4ffc_A 80 ASHPAVAAAIADQATHFTHTCF------MVTPYEQYVQVAELLNALTPGDHDKRTALFNSGAEAVENAIKVARL--ATGR 151 (453)
T ss_dssp TTCHHHHHHHHHHHHHCSCCTT------TTSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHH--HHCC
T ss_pred CCCHHHHHHHHHHHHhcccccc------CcCCCHHHHHHHHHHHHhCCCCCCcEEEEeCcHHHHHHHHHHHHHH--hcCC
Confidence 4589999999999876422211 1112345678899999999764 46899999999999999987651 1256
Q ss_pred CEEEEcCCCCcccHHHHHHHHhC-----------CcEEEEeccCC----CCcc--------ChHHHHhhccCCceEEEEe
Q psy15216 87 KHIITVQTEHKSVLDSIRKLEND-----------GFRVTYLKPKN----NGLI--------TLSQLEEKICSDTILVSVM 143 (2602)
Q Consensus 87 d~Vlv~~~~~~s~~~~~~~~~~~-----------G~~v~~v~~~~----~~~l--------d~e~l~~~i~~~tklv~i~ 143 (2602)
+.|++.++.|++.......+... ...+..++... .... +++.|++.+.+++.+++++
T Consensus 152 ~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~i~~~~~aavi~ 231 (453)
T 4ffc_A 152 PAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQIGAQSLAAIII 231 (453)
T ss_dssp CEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHHHHHTCGGGEEEEEE
T ss_pred CEEEEEcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCccccCccccchHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 89999999999876655544110 11345555431 1111 2467777776666555555
Q ss_pred cccCcc-ccccc----HHHHHHHHHhcCCEEEEecccc-ccccc----ccCCCCCccEEEeccccccCC-CCcEEEEEec
Q psy15216 144 LVNNEI-GVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKID----INIQNYKVDLMSFSAHKIYGP-KGIGALYIRR 212 (2602)
Q Consensus 144 ~~~npT-G~~~~----l~~I~~la~~~g~~livD~a~a-~g~~~----~dl~~~~~D~~~~S~~K~~Gp-~G~G~l~~~~ 212 (2602)
.|.|++ |.+.+ +++|.++|++||+++|+|++|. ++... .+.....+|+++ ++|.+|+ -.+|++++++
T Consensus 232 ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~a~~~~~~~pdi~t--~sK~~~~G~~~G~~~~~~ 309 (453)
T 4ffc_A 232 EPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTGAWFASEHEGIVPDIVT--MAKGIAGGMPLSAVTGRA 309 (453)
T ss_dssp CSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEE--ECGGGGTTSSCEEEEEEH
T ss_pred cCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCCCcccccchhhhcCCCcchHh--hhhhhcCCcCeEEEEECH
Confidence 666655 55655 8999999999999999999986 33211 111123456664 5696544 2289999999
Q ss_pred CCCCcccceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhh---ccCceEEeCCCCCC
Q psy15216 213 NPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLME---SIEEIYINGDMNNR 289 (2602)
Q Consensus 213 ~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~---~~~g~~l~~~~~~~ 289 (2602)
++++.+.+...+ ...+.+..+.++..++|+.... ++..++.+++.+++++.|.+ ..+.+....+.
T Consensus 310 ~i~~~~~~~~~~-------~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~--- 377 (453)
T 4ffc_A 310 ELMDAVYAGGLG-------GTYGGNPVTCAAAVAALGVMRE--LDLPARARAIEASVTSRLSALAEEVDIIGEVRGR--- 377 (453)
T ss_dssp HHHTTSCTTSSC-------CSSSSCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHHHCSSEEEEEEE---
T ss_pred HHHhhhcccCcC-------CCCCcCHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEee---
Confidence 887777653321 1234566666666678875432 23444444555555555443 14444333211
Q ss_pred CCceEEEEEcc-----c---ChhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHH
Q psy15216 290 IPHNLNISFNF-----I---EGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEI 359 (2602)
Q Consensus 290 ~~~~~~~~~~~-----~---~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edi 359 (2602)
..+..+.+.. . ....+...+ +||.++++..+ .+++|++++...+++|+
T Consensus 378 -g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~---------------------~~~iRi~~~~~~t~e~i 435 (453)
T 4ffc_A 378 -GAMLAIEIVKPGTLEPDAALTKSIAAEALSQGVLILTCGTF---------------------GNVIRLLPPLVIGDDLL 435 (453)
T ss_dssp -TTEEEEEEBCTTSCCBCHHHHHHHHHHHHHTTEECCEECTT---------------------SCEEEECCCTTCCHHHH
T ss_pred -ceEEEEEEecCcccCCCHHHHHHHHHHHHhCCCEEecCCCC---------------------CCEEEEECCCCCCHHHH
Confidence 1233344421 1 123455554 79998875321 26899999988999999
Q ss_pred HHHHHHHHhh
Q psy15216 360 DFTIKLLKMK 369 (2602)
Q Consensus 360 d~li~~L~~~ 369 (2602)
++++++|++.
T Consensus 436 ~~~l~~l~~~ 445 (453)
T 4ffc_A 436 DEGITALSDI 445 (453)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999964
|
| >3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=4.1e-16 Score=205.54 Aligned_cols=306 Identities=14% Similarity=0.077 Sum_probs=193.9
Q ss_pred CCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCE
Q psy15216 9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKH 88 (2602)
Q Consensus 9 ~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~ 88 (2602)
.+|.+.+++.+.+.....+ ++ ..+...+++++++++++ ++++|++++|+++|+..++..+.. ...++.
T Consensus 69 ~~p~v~~a~~~~~~~~~~~--------~~-~~~~~~~la~~l~~~~~-~~~~v~~~~ggsea~~~al~~a~~--~~~~~~ 136 (427)
T 3fq8_A 69 AHPEVIEALKVAMEKGTSF--------GA-PCALENVLAEMVNDAVP-SIEMVRFVNSGTEACMAVLRIMRA--YTGRDK 136 (427)
T ss_dssp TCHHHHHHHHHHHTTCSCC--------SS-CCHHHHHHHHHHHHHST-TCSEEEEESSHHHHHHHHHHHHHH--HHCCCE
T ss_pred CCHHHHHHHHHHHHhCCCc--------CC-CCHHHHHHHHHHHHhCC-CCCEEEEeCCHHHHHHHHHHHHHH--hhCCCE
Confidence 5899999999988653211 11 23467788999999998 678999999999999999955431 124578
Q ss_pred EEEcCCCCcccHHHHHHHHh-----------CC------cEEEEeccCCCCccChHHHHhhccC---CceEEEEecccCc
Q psy15216 89 IITVQTEHKSVLDSIRKLEN-----------DG------FRVTYLKPKNNGLITLSQLEEKICS---DTILVSVMLVNNE 148 (2602)
Q Consensus 89 Vlv~~~~~~s~~~~~~~~~~-----------~G------~~v~~v~~~~~~~ld~e~l~~~i~~---~tklv~i~~~~np 148 (2602)
|++.++.|++.......+.. .| ..+..++.+ |+++|++++++ ++++|+++.++|+
T Consensus 137 vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~~vi~~p~~~~ 211 (427)
T 3fq8_A 137 IIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYN-----DLEAVKALFAENPGEIAGVILEPIVGN 211 (427)
T ss_dssp EEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEETT-----CHHHHHHHHHHSTTTEEEEEECSSBCT
T ss_pred EEEECCCcCCCCHHHHHhcCCcccccCCCCCCCCCCcccCceeecCCC-----CHHHHHHHHHhCCCCEEEEEEcCCcCC
Confidence 88888888764322111100 00 012222221 89999999864 6889999999999
Q ss_pred cccccc----HHHHHHHHHhcCCEEEEeccccc---cc-ccccCCCCCccEEEeccccccCCCC--cEEEEEecCCCCcc
Q psy15216 149 IGVIQP----ILEIGELCRSKGVIFHCDAAQAV---GK-IDINIQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRI 218 (2602)
Q Consensus 149 TG~~~~----l~~I~~la~~~g~~livD~a~a~---g~-~~~dl~~~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l 218 (2602)
+|.+.| +++|.++|++||+++|+|++|+. |. ...+.....+|++ |++|.+| .| +|++++++++++.+
T Consensus 212 ~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~~~g~~~~~~~~~~~~di~--t~sK~~~-~G~~~G~~~~~~~~~~~~ 288 (427)
T 3fq8_A 212 SGFIVPDAGFLEGLREITLEHDALLVFDEVITGFRIAYGGVQEKFGVTPDLT--TLGKIIG-GGLPVGAYGGKREIMQLV 288 (427)
T ss_dssp TSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBTTTBTTHHHHHTTCCCSEE--EECGGGG-TTSSCEEEEECHHHHTTB
T ss_pred CCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCcchhhHhcCCCCChh--hhhhhhh-CCcceEEEEEcHHHHHhh
Confidence 999999 99999999999999999999971 11 1112223346765 5569766 35 89999998887777
Q ss_pred cceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhc---cCceEEeCCCCCCCCceEE
Q psy15216 219 EAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMES---IEEIYINGDMNNRIPHNLN 295 (2602)
Q Consensus 219 ~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~---~~g~~l~~~~~~~~~~~~~ 295 (2602)
.+.... ......+.+..+++++.++++.... ++..++.+++.+++++.|.+. .+....... ...+..
T Consensus 289 ~~~~~~----~~~~t~~~~~~~~aa~~aal~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~g~~~~ 358 (427)
T 3fq8_A 289 APAGPM----YQAGTLSGNPLAMTAGIKTLELLRQ--PGTYEYLDQITKRLSDGLLAIAQETGHAACGGQ----VSGMFG 358 (427)
T ss_dssp TTTSSB----CCCCTTTTCHHHHHHHHHHHHHHTS--TTHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEE----ETTEEE
T ss_pred ccCCCc----cccCCCCcCHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEE----eeeEEE
Confidence 642100 0011224567777777778875432 345556666666666666541 111101100 112333
Q ss_pred EEEcccC--------------hhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHH
Q psy15216 296 ISFNFIE--------------GESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEI 359 (2602)
Q Consensus 296 ~~~~~~~--------------~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edi 359 (2602)
+.+.... ...+...| +||.++++.. . |++++...+++|+
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gi~v~~~~~-----------------------~--r~~~~~~~t~e~i 413 (427)
T 3fq8_A 359 FFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLAPSQF-----------------------E--AGFTSLAHTEEDI 413 (427)
T ss_dssp EESSSCCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSSTT-----------------------S--CEECCTTCCHHHH
T ss_pred EEEecCccccccccccccHHHHHHHHHHHHHCCcEEecCCC-----------------------C--CEEeeCcCCHHHH
Confidence 3332211 12455555 7888875431 1 4455566899999
Q ss_pred HHHHHHHHhh
Q psy15216 360 DFTIKLLKMK 369 (2602)
Q Consensus 360 d~li~~L~~~ 369 (2602)
++++++|++.
T Consensus 414 ~~~l~~l~~~ 423 (427)
T 3fq8_A 414 DATLAAARTV 423 (427)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999864
|
| >3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.1e-14 Score=193.14 Aligned_cols=320 Identities=13% Similarity=0.058 Sum_probs=206.3
Q ss_pred CCCCHHHHHHHHHHHhhhc-CCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccc--
Q psy15216 7 TPIDPRVVDKMIPYLRVQF-GNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYK-- 83 (2602)
Q Consensus 7 ~~~p~~v~~a~~~~l~~~~-~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~-- 83 (2602)
+..+|.+.+++.+.+.... .++.. ....+...++.++++++++.+.++|+|++|+++|+..++..+.....
T Consensus 70 Gh~~p~v~~A~~~~~~~~~~~~~~~------~~~~~~~~~lae~l~~~~~~~~~~v~~~~sGseA~~~aik~a~~~~~~~ 143 (472)
T 3hmu_A 70 GYGRDELAEVAARQMRELPYYNTFF------KTTHVPAIALAQKLAELAPGDLNHVFFAGGGSEANDTNIRMVRTYWQNK 143 (472)
T ss_dssp CBCCHHHHHHHHHHHHHCSCCCSSS------SEECHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHhcccccccc------ccCCHHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHHHHHhc
Confidence 3458999999999987632 11111 11224567889999999987777999999999999999998872100
Q ss_pred --cCCCEEEEcCCCCcccHHHHHHHHhC---------CcEEEEeccCCCCc----cC--------hHHHHhhcc----CC
Q psy15216 84 --KRGKHIITVQTEHKSVLDSIRKLEND---------GFRVTYLKPKNNGL----IT--------LSQLEEKIC----SD 136 (2602)
Q Consensus 84 --~~gd~Vlv~~~~~~s~~~~~~~~~~~---------G~~v~~v~~~~~~~----ld--------~e~l~~~i~----~~ 136 (2602)
.+++.|++.++.|+.+......+... ...+..++....+. .| +++|+++++ ++
T Consensus 144 g~~~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~ 223 (472)
T 3hmu_A 144 GQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLIPDVHHINQPNWWAEGGDMDPEEFGLARARELEEAILELGENR 223 (472)
T ss_dssp TCTTCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTCCCSSEEEECCCCHHHHCTTCCHHHHHHHHHHHHHHHHHHHCGGG
T ss_pred CCCCCCEEEEEcCcCCCccHHhhhccCChhhccccCCCCCcEEeCCCccccCCcccCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 14689999999999876555444110 01244444322111 23 788888886 56
Q ss_pred ceEEEEecccCccccccc----HHHHHHHHHhcCCEEEEecccc-ccccc----ccCCCCCccEEEeccccccCC--CCc
Q psy15216 137 TILVSVMLVNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKID----INIQNYKVDLMSFSAHKIYGP--KGI 205 (2602)
Q Consensus 137 tklv~i~~~~npTG~~~~----l~~I~~la~~~g~~livD~a~a-~g~~~----~dl~~~~~D~~~~S~~K~~Gp--~G~ 205 (2602)
+++|++..+++++|.+.| +++|.++|++||+++|+|++|. +|... .......+|+++ ++|.+|. -.+
T Consensus 224 ~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~a~~~~~v~pdi~t--~sK~l~gg~~pl 301 (472)
T 3hmu_A 224 VAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTGNWFGTQTMGIRPHIMT--IAKGLSSGYAPI 301 (472)
T ss_dssp EEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCCCSEEE--ECGGGTTTSSCC
T ss_pred EEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccccCCcccCccchhHHhCCCCceee--echhhhcCCcce
Confidence 788888888888999887 9999999999999999999986 43221 111233478875 4595543 237
Q ss_pred EEEEEecCCCCcccceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHhhc--cCceEE
Q psy15216 206 GALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRIL-FLQKRLYNGLMES--IEEIYI 282 (2602)
Q Consensus 206 G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~-~l~~~l~~~L~~~--~~g~~l 282 (2602)
|++++++++++.+.+... ......+.+..+.++..++|+.... +...++.+ ++.+++++.|.+. .+.+..
T Consensus 302 G~v~~~~~i~~~~~~~~~-----~~~~t~~~np~a~aAa~aaL~~~~~--~~~~~~~~~~~~~~l~~~L~~l~~~~~v~~ 374 (472)
T 3hmu_A 302 GGSIVCDEVAHVIGKDEF-----NHGYTYSGHPVAAAVALENLRILEE--ENILDHVRNVAAPYLKEKWEALTDHPLVGE 374 (472)
T ss_dssp EEEEEEHHHHHHHTTSCB-----CCCCTTTTCHHHHHHHHHHHHHHHH--TTHHHHHHHTHHHHHHHHHHGGGGSTTEEE
T ss_pred EEEEECHHHHHhcccCCc-----cccCCCCCCHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHhcCCCeEE
Confidence 999999887766632100 0001234566677777788875443 34555566 6666666666441 344433
Q ss_pred eCCCCCCCCceEEEEEcccC-------------hhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEE
Q psy15216 283 NGDMNNRIPHNLNISFNFIE-------------GESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIR 347 (2602)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iR 347 (2602)
..+. ..+..+.+.... ...+...| +||.++++. ++||
T Consensus 375 vr~~----G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g------------------------~~iR 426 (472)
T 3hmu_A 375 AKIV----GMMASIALTPNKASRAKFASEPGTIGYICRERCFANNLIMRHVG------------------------DRMI 426 (472)
T ss_dssp EEEE----TTEEEEEECSCGGGTCCBSSCTTHHHHHHHHHHHHTTBCCEEET------------------------TEEE
T ss_pred EEec----CceEEEEEecCccccccccchhHHHHHHHHHHHHHCCcEEEecC------------------------CEEE
Confidence 2211 223334443210 22344444 687776431 5799
Q ss_pred EecCCCCCHHHHHHHHHHHHhh
Q psy15216 348 FTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 348 is~~~~~t~edid~li~~L~~~ 369 (2602)
|++....|++|+++++++|++.
T Consensus 427 i~p~~~~t~e~i~~~l~~l~~~ 448 (472)
T 3hmu_A 427 ISPPLVITPAEIDEMFVRIRKS 448 (472)
T ss_dssp ECCCTTCCHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHH
Confidence 9988889999999999999974
|
| >1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B* | Back alignment and structure |
|---|
Probab=99.63 E-value=5.7e-17 Score=208.90 Aligned_cols=212 Identities=17% Similarity=0.179 Sum_probs=92.0
Q ss_pred eEEEEEcCCCCHHHHHHHHHHH-HHcCCceEEEechhHHHHHHhhhccCcccceEEEEEeCCceEEEEEEEEECCEEEEE
Q psy15216 767 GAVITVPAYFNDIQRQFTKNAA-KLAGLNVLRLLNEPTSAAIAYKLDKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVL 845 (2602)
Q Consensus 767 ~~ViTVPa~f~~~qr~~~~~Aa-~~AGl~~~~li~EPtAAAl~y~~~~~~~~~~vlV~D~GGGT~Dvsv~~~~~~~~~v~ 845 (2602)
.++||+|+.++..+|+++.+.+ +.+|++.+.+++||.||+++++.. +.+|+|+|+|||+++.+. +|.. +.
T Consensus 106 ~vllt~p~~~~~~~r~~~~e~~fe~~~~~~~~~~~~~~~a~~a~g~~------~~lVVDiG~g~T~v~pv~--~G~~-~~ 176 (394)
T 1k8k_B 106 KILLTEPPMNPTKNREKIVEVMFETYQFSGVYVAIQAVLTLYAQGLL------TGVVVDSGDGVTHICPVY--EGFS-LP 176 (394)
T ss_dssp ------------------------------------------------------CCEEEECSSCEEEECEE--TTEE-CS
T ss_pred cEEEEECCCCCHHHHHHHHHHhhhccCCCeEEEEhhHHHHHHhCCCc------eEEEEEcCCCceEeeeeE--CCEE-cc
Confidence 5999999999999999999865 788999999999999999988763 459999999999998663 4433 21
Q ss_pred EEecCCCCcchHHHHHHHHHHHHHH-hhcc-CCHHHHHHHHHHHHHHHHHcccc--------------cceEEEEEecCC
Q psy15216 846 SVGGDSNLGGDDFDYCLFSWIVKNA-FLKK-LSYKDVNILMIKSREIKELLSYQ--------------SSVKLNVKLSDK 909 (2602)
Q Consensus 846 ~~~g~~~lGG~~~D~~l~~~l~~~~-~~~~-~~~~~~~~l~~~~e~~K~~LS~~--------------~~~~~~i~~~~~ 909 (2602)
.......+||+++|+.|.+++.++. .... .+ ...+|++|+.+... ......+++.+|
T Consensus 177 ~~~~~~~~GG~~lt~~l~~~l~~~~~~~~~~~~-------~~~ae~iK~~~~~v~~d~~~~~~~~~~~~~~~~~~~lpdg 249 (394)
T 1k8k_B 177 HLTRRLDIAGRDITRYLIKLLLLRGYAFNHSAD-------FETVRMIKEKLCYVGYNIEQEQKLALETTVLVESYTLPDG 249 (394)
T ss_dssp TTCEEESCCHHHHHHHHHHHHHHTTCCCCTTTT-------HHHHHHHHHHHCCCCSSHHHHHHHHHHCSTTCEEEECTTS
T ss_pred cceEEeeccHHHHHHHHHHHHHhcCCCCCcHHH-------HHHHHHHHHhheeEecCHHHHHHhhccCCcCceEEECCCC
Confidence 1123468999999999999997651 1100 12 23455566554321 111223445555
Q ss_pred ceEEEEeCHHHH---HHHHHHH-----HHHHHHHHHHHHHHcCCC--ccccceEEEecCccchHHHHHHHHhhccC----
Q psy15216 910 KIVNITIDMKQF---FTITQHL-----VNRTILLSSKALMDANLT--IKDINNVILVGGSTRMKHIHEGVSNFFKT---- 975 (2602)
Q Consensus 910 ~~~~~~itr~~f---e~l~~~~-----~~~~~~~i~~~l~~a~~~--~~~i~~V~LvGG~sr~P~v~~~l~~~f~~---- 975 (2602)
. .++|++++| |.+++|. ...+.++|.+.|..+..+ ..-.+.|+|+||+|.+|.+.++|++.++.
T Consensus 250 ~--~i~i~~erf~~~E~Lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvLtGG~s~~~G~~~rl~~el~~~~~~ 327 (394)
T 1k8k_B 250 R--IIKVGGERFEAPEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKHIVLSGGSTMYPGLPSRLERELKQLYLE 327 (394)
T ss_dssp C--EEEECTHHHHTGGGGTCGGGGTCCSCCHHHHHHHHHHHSCTTTHHHHHTTCEEESGGGCSTTHHHHHHHHHHHHHHH
T ss_pred C--EEEECchhhcChHhhCCchhccCCCCCHHHHHHHHHHhCCHHHHHHHHhCEEEeCcccccccHHHHHHHHHHHHHhh
Confidence 5 456777777 3344442 234677888888877433 33457899999999999999999877642
Q ss_pred ---------------cccCcCCcchHhHHHHHHHhH
Q psy15216 976 ---------------TLLTSIDPDKAVVFGAAIQAN 996 (2602)
Q Consensus 976 ---------------~~~~~~~p~~aVa~GAa~~a~ 996 (2602)
++..+.+|..++.+|++++|.
T Consensus 328 ~~~~~~~~~p~~~~v~v~~~~~~~~~~w~Ggsilas 363 (394)
T 1k8k_B 328 RVLKGDVEKLSKFKIRIEDPPRRKHMVFLGGAVLAD 363 (394)
T ss_dssp HTCSSCCCTTCCCCC---------------------
T ss_pred hhcccccCCCCceEEEEecCCCcceeEEhhhHHhhC
Confidence 223356788999999999885
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 2602 | ||||
| d1p3wa_ | 391 | c.67.1.3 (A:) Cysteine desulfurase IscS {Escherich | 1e-107 | |
| d1p3wa_ | 391 | c.67.1.3 (A:) Cysteine desulfurase IscS {Escherich | 1e-105 | |
| d1eg5a_ | 376 | c.67.1.3 (A:) NifS-like protein/selenocysteine lya | 1e-79 | |
| d1eg5a_ | 376 | c.67.1.3 (A:) NifS-like protein/selenocysteine lya | 1e-77 | |
| d1t3ia_ | 408 | c.67.1.3 (A:) Probable cysteine desulfurase SufS { | 5e-73 | |
| d1t3ia_ | 408 | c.67.1.3 (A:) Probable cysteine desulfurase SufS { | 4e-71 | |
| d1jf9a_ | 405 | c.67.1.3 (A:) NifS-like protein/selenocysteine lya | 5e-73 | |
| d1jf9a_ | 405 | c.67.1.3 (A:) NifS-like protein/selenocysteine lya | 3e-71 | |
| d1dkgd1 | 183 | c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPas | 1e-53 | |
| d1dkgd1 | 183 | c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPas | 1e-53 | |
| d1bupa1 | 185 | c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPas | 4e-49 | |
| d1bupa1 | 185 | c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPas | 4e-49 | |
| d1dkgd2 | 198 | c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATP | 2e-42 | |
| d1dkgd2 | 198 | c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATP | 2e-42 | |
| d1bupa2 | 193 | c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATP | 7e-42 | |
| d1bupa2 | 193 | c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATP | 7e-42 | |
| d1kona_ | 244 | e.39.1.1 (A:) Hypothetical protein YebC {Escherich | 6e-39 | |
| d1yuwa1 | 159 | b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus | 4e-36 | |
| d1yuwa1 | 159 | b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus | 4e-36 | |
| d1lfpa_ | 243 | e.39.1.1 (A:) Hypothetical protein aq1575 {Aquifex | 2e-34 | |
| d1r9pa_ | 134 | d.224.1.2 (A:) NifU-like protein HI0377 {Haemophil | 2e-34 | |
| d1r9pa_ | 134 | d.224.1.2 (A:) NifU-like protein HI0377 {Haemophil | 2e-34 | |
| d1qz9a_ | 404 | c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescen | 4e-34 | |
| d1qz9a_ | 404 | c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescen | 4e-33 | |
| d1dkza2 | 118 | b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxI | 4e-34 | |
| d1dkza2 | 118 | b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxI | 4e-34 | |
| d1c4ka2 | 462 | c.67.1.5 (A:108-569) Ornithine decarboxylase major | 2e-32 | |
| d1c4ka2 | 462 | c.67.1.5 (A:108-569) Ornithine decarboxylase major | 2e-32 | |
| d1wfza_ | 130 | d.224.1.2 (A:) Iron-sulfur cluster protein U (IscU | 6e-32 | |
| d1wfza_ | 130 | d.224.1.2 (A:) Iron-sulfur cluster protein U (IscU | 6e-32 | |
| d1u00a2 | 115 | b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc6 | 5e-31 | |
| d1u00a2 | 115 | b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc6 | 5e-31 | |
| d2bkwa1 | 382 | c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransfe | 6e-30 | |
| d2bkwa1 | 382 | c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransfe | 6e-30 | |
| d1svva_ | 340 | c.67.1.1 (A:) Low-specificity threonine aldolase { | 9e-30 | |
| d1svva_ | 340 | c.67.1.1 (A:) Low-specificity threonine aldolase { | 2e-29 | |
| d1ax4a_ | 465 | c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanas | 2e-29 | |
| d1ax4a_ | 465 | c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanas | 2e-29 | |
| d1pmma_ | 450 | c.67.1.6 (A:) Glutamate decarboxylase beta, GadB { | 9e-28 | |
| d1pmma_ | 450 | c.67.1.6 (A:) Glutamate decarboxylase beta, GadB { | 9e-28 | |
| d1vjoa_ | 377 | c.67.1.3 (A:) Alanine-glyoxylate aminotransferase | 2e-26 | |
| d1vjoa_ | 377 | c.67.1.3 (A:) Alanine-glyoxylate aminotransferase | 2e-26 | |
| d1mw7a_ | 220 | e.39.1.1 (A:) Hypothetical protein HP0162 {Helicob | 6e-26 | |
| d1m32a_ | 361 | c.67.1.3 (A:) 2-aminoethylphosphonate transaminase | 3e-25 | |
| d1m32a_ | 361 | c.67.1.3 (A:) 2-aminoethylphosphonate transaminase | 3e-25 | |
| d1h0ca_ | 388 | c.67.1.3 (A:) Alanine-glyoxylate aminotransferase | 3e-25 | |
| d1h0ca_ | 388 | c.67.1.3 (A:) Alanine-glyoxylate aminotransferase | 3e-25 | |
| d2ch1a1 | 388 | c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminas | 2e-24 | |
| d2ch1a1 | 388 | c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminas | 2e-24 | |
| d1elua_ | 381 | c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocyst | 4e-24 | |
| d1elua_ | 381 | c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocyst | 1e-22 | |
| d1jcea1 | 137 | c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB | 3e-23 | |
| d1jcea1 | 137 | c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB | 3e-23 | |
| d2v1pa1 | 467 | c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptop | 4e-23 | |
| d2v1pa1 | 467 | c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptop | 4e-23 | |
| d1xjsa_ | 147 | d.224.1.2 (A:) NifU {Bacillus subtilis [TaxId: 142 | 2e-21 | |
| d1xjsa_ | 147 | d.224.1.2 (A:) NifU {Bacillus subtilis [TaxId: 142 | 2e-21 | |
| d1v72a1 | 345 | c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Ps | 3e-21 | |
| d1v72a1 | 345 | c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Ps | 8e-21 | |
| d1jcea2 | 196 | c.55.1.1 (A:141-336) Prokaryotic actin homolog Mre | 3e-20 | |
| d1jcea2 | 196 | c.55.1.1 (A:141-336) Prokaryotic actin homolog Mre | 3e-20 | |
| d1i7ha_ | 109 | d.15.4.1 (A:) Adrenodoxin-like ferredoxin {Escheri | 4e-19 | |
| d1i7ha_ | 109 | d.15.4.1 (A:) Adrenodoxin-like ferredoxin {Escheri | 2e-16 | |
| d1su0b_ | 136 | d.224.1.2 (B:) IscU homolog SPy0289 {Streptococcus | 5e-19 | |
| d1su0b_ | 136 | d.224.1.2 (B:) IscU homolog SPy0289 {Streptococcus | 5e-19 | |
| d3bc8a1 | 445 | c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase | 5e-18 | |
| d3bc8a1 | 445 | c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase | 5e-18 | |
| d2e7ja1 | 364 | c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase ( | 2e-17 | |
| d2e7ja1 | 364 | c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase ( | 6e-17 | |
| d2z67a1 | 434 | c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase ( | 1e-16 | |
| d2z67a1 | 434 | c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase ( | 1e-16 | |
| d1c7ga_ | 456 | c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbi | 3e-16 | |
| d1c7ga_ | 456 | c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbi | 3e-16 | |
| d1l5pa_ | 93 | d.15.4.1 (A:) 2Fe-2S ferredoxin {Trichomonas vagin | 8e-16 | |
| d1l5pa_ | 93 | d.15.4.1 (A:) 2Fe-2S ferredoxin {Trichomonas vagin | 1e-13 | |
| d2bt6a1 | 104 | d.15.4.1 (A:5-108) Adrenodoxin {Cow (Bos taurus) [ | 6e-15 | |
| d2bt6a1 | 104 | d.15.4.1 (A:5-108) Adrenodoxin {Cow (Bos taurus) [ | 3e-12 | |
| d1js3a_ | 476 | c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) | 8e-15 | |
| d1js3a_ | 476 | c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) | 3e-14 | |
| d2zgya2 | 163 | c.55.1.1 (A:158-320) Plasmid segregation protein P | 2e-14 | |
| d2zgya2 | 163 | c.55.1.1 (A:158-320) Plasmid segregation protein P | 2e-14 | |
| d1xlqa1 | 106 | d.15.4.1 (A:1-106) 2Fe-2S ferredoxin {Pseudomonas | 2e-13 | |
| d1xlqa1 | 106 | d.15.4.1 (A:1-106) 2Fe-2S ferredoxin {Pseudomonas | 8e-11 | |
| d1b9ra_ | 105 | d.15.4.1 (A:) 2Fe-2S ferredoxin {Pseudomonas sp., | 2e-13 | |
| d1b9ra_ | 105 | d.15.4.1 (A:) 2Fe-2S ferredoxin {Pseudomonas sp., | 1e-10 | |
| d1bjna_ | 360 | c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT | 1e-12 | |
| d1bjna_ | 360 | c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT | 1e-12 | |
| d2fsja1 | 161 | c.55.1.12 (A:165-325) Hypothetical protein Ta0583 | 7e-12 | |
| d2fsja1 | 161 | c.55.1.12 (A:165-325) Hypothetical protein Ta0583 | 7e-12 | |
| d1e9ma_ | 106 | d.15.4.1 (A:) 2Fe-2S ferredoxin {Rhodobacter capsu | 1e-11 | |
| d1e9ma_ | 106 | d.15.4.1 (A:) 2Fe-2S ferredoxin {Rhodobacter capsu | 3e-09 | |
| d1s98a_ | 97 | b.124.1.1 (A:) Fe-S scaffold protein IscA (YfhF) { | 3e-11 | |
| d1s98a_ | 97 | b.124.1.1 (A:) Fe-S scaffold protein IscA (YfhF) { | 3e-11 | |
| d2fug33 | 95 | d.15.4.2 (3:1-95) Nadh-quinone oxidoreductase chai | 4e-10 | |
| d2fug33 | 95 | d.15.4.2 (3:1-95) Nadh-quinone oxidoreductase chai | 1e-07 | |
| d1nwba_ | 101 | b.124.1.1 (A:) Hypothetical protein Aq_1857 {Aquif | 4e-07 | |
| d1nwba_ | 101 | b.124.1.1 (A:) Hypothetical protein Aq_1857 {Aquif | 4e-07 | |
| d1doia_ | 128 | d.15.4.1 (A:) 2Fe-2S ferredoxin {Archaeon Haloarcu | 3e-06 | |
| d1doia_ | 128 | d.15.4.1 (A:) 2Fe-2S ferredoxin {Archaeon Haloarcu | 0.001 | |
| d1v2da_ | 368 | c.67.1.1 (A:) Glutamine aminotransferase {Thermus | 6e-06 | |
| d1v2da_ | 368 | c.67.1.1 (A:) Glutamine aminotransferase {Thermus | 6e-06 | |
| d1krha3 | 104 | d.15.4.2 (A:2-105) Benzoate dioxygenase reductase, | 6e-06 | |
| d1krha3 | 104 | d.15.4.2 (A:2-105) Benzoate dioxygenase reductase, | 0.001 | |
| d1fpoa1 | 76 | a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) doma | 7e-05 | |
| d1fpoa1 | 76 | a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) doma | 7e-05 | |
| d1a70a_ | 97 | d.15.4.1 (A:) 2Fe-2S ferredoxin {Spinach (Spinacia | 1e-04 | |
| d1a70a_ | 97 | d.15.4.1 (A:) 2Fe-2S ferredoxin {Spinach (Spinacia | 0.002 | |
| d1jq4a_ | 98 | d.15.4.2 (A:) Methane monooxygenase reductase N-te | 2e-04 | |
| d1m6sa_ | 343 | c.67.1.1 (A:) Low-specificity threonine aldolase { | 3e-04 | |
| d1m6sa_ | 343 | c.67.1.1 (A:) Low-specificity threonine aldolase { | 0.001 | |
| d1frda_ | 98 | d.15.4.1 (A:) 2Fe-2S ferredoxin {Cyanobacterium (A | 0.003 | |
| d1frra_ | 95 | d.15.4.1 (A:) 2Fe-2S ferredoxin {Equisetum arvense | 0.004 |
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} Length = 391 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Score = 344 bits (884), Expect = e-107
Identities = 245/369 (66%), Positives = 317/369 (85%), Gaps = 3/369 (0%)
Query: 1 MDYSATTPIDPRVVDKMIPYLRVQ--FGNPASRNHIYGWTAEKAIEKARNEVAQLIYADP 58
+DYSATTP+DPRV +KM+ ++ + FGNPASR+H +GW AE+A++ ARN++A L+ ADP
Sbjct: 6 LDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADP 65
Query: 59 REIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP 118
REI++TSGATES+NLAIKGAA+FY+K+GKHIIT +TEHK+VLD+ R+LE +GF VTYL P
Sbjct: 66 REIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAP 125
Query: 119 KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVG 178
+ NG+I L +LE + DTILVS+M VNNEIGV+Q I IGE+CR++G+I+H DA Q+VG
Sbjct: 126 QRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVG 185
Query: 179 KIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLAT 238
K+ I++ KVDLMSFS HKIYGPKGIGALY+RR PR RIEAQ+HGGGHE G+RSGTL
Sbjct: 186 KLPIDLSQLKVDLMSFSGHKIYGPKGIGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPV 245
Query: 239 HQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISF 298
HQIVGMGEA+R+A+ EM E++R+ L+ RL+NG+ + IEE+Y+NGD+ + P+ LN+SF
Sbjct: 246 HQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGI-KDIEEVYLNGDLEHGAPNILNVSF 304
Query: 299 NFIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKE 358
N++EGESL+MA+KD+AVSSGSACTSASLEPSYVLRALG NDELAHSSIRF++GRFTTE+E
Sbjct: 305 NYVEGESLIMALKDLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEE 364
Query: 359 IDFTIKLLK 367
ID+TI+L++
Sbjct: 365 IDYTIELVR 373
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} Length = 391 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Score = 339 bits (870), Expect = e-105
Identities = 242/365 (66%), Positives = 313/365 (85%), Gaps = 3/365 (0%)
Query: 1401 ATTPIDPRVVDKMIPYLRVQ--FGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREII 1458
ATTP+DPRV +KM+ ++ + FGNPASR+H +GW AE+A++ ARN++A L+ ADPREI+
Sbjct: 10 ATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIV 69
Query: 1459 WTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNG 1518
+TSGATES+NLAIKGAA+FY+K+GKHIIT +TEHK+VLD+ R+LE +GF VTYL P+ NG
Sbjct: 70 FTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNG 129
Query: 1519 LITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDI 1578
+I L +LE + DTILVS+M VNNEIGV+Q I IGE+CR++G+I+H DA Q+VGK+ I
Sbjct: 130 IIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLPI 189
Query: 1579 NIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIV 1638
++ KVDLMSFS HKIYGPKGIGALY+RR PR RIEAQ+HGGGHE G+RSGTL HQIV
Sbjct: 190 DLSQLKVDLMSFSGHKIYGPKGIGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIV 249
Query: 1639 GMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIE 1698
GMGEA+R+A+ EM E++R+ L+ RL+NG+ + IEE+Y+NGD+ + P+ LN+SFN++E
Sbjct: 250 GMGEAYRIAKEEMATEMERLRGLRNRLWNGI-KDIEEVYLNGDLEHGAPNILNVSFNYVE 308
Query: 1699 GESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFT 1758
GESL+MA+KD+AVSSGSACTSASLEPSYVLRALG NDELAHSSIRF++GRFTTE+EID+T
Sbjct: 309 GESLIMALKDLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYT 368
Query: 1759 IKLLK 1763
I+L++
Sbjct: 369 IELVR 373
|
| >d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} Length = 376 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Thermotoga maritima [TaxId: 2336]
Score = 266 bits (679), Expect = 1e-79
Identities = 145/371 (39%), Positives = 225/371 (60%), Gaps = 9/371 (2%)
Query: 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
D +ATT +D RV+++MI + R ++GNP + H G A +EKAR +VA+++ P E
Sbjct: 5 FDNNATTRVDDRVLEEMIVFYREKYGNP-NSAHGMGIEANLHMEKAREKVAKVLGVSPSE 63
Query: 61 IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN 120
I +TS ATES N +K A ++KR + IIT EHK+VL++++ L GF+V Y+ +
Sbjct: 64 IFFTSCATESINWILKTVAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDS 123
Query: 121 NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGEL--CRSKGVIFHCDAAQAVG 178
G++ L +LE+ + DT LVS+M NNE+G IQP+ ++ + ++K + H DA Q +G
Sbjct: 124 RGVVKLEELEKLVDEDTFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQTIG 183
Query: 179 KIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLAT 238
KI +++ +VD SFSAHK +GPKG+G YIR+ I IHGGG E GLRSGT
Sbjct: 184 KIPFSLEKLEVDYASFSAHKFHGPKGVGITYIRKGV--PIRPLIHGGGQERGLRSGTQNV 241
Query: 239 HQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISF 298
IVG A +A E+ E K + L+ +L +GLM +I + +P+ L++SF
Sbjct: 242 PGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLM--NLGAHIITPLEISLPNTLSVSF 299
Query: 299 NFIEGESL--LMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTE 356
I G +L L++ I VS+ SACTS +VL A+G + +A +IR ++ ++ TE
Sbjct: 300 PNIRGSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTE 359
Query: 357 KEIDFTIKLLK 367
+E+D+ +K ++
Sbjct: 360 EEVDYFLKKIE 370
|
| >d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} Length = 376 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Thermotoga maritima [TaxId: 2336]
Score = 261 bits (666), Expect = 1e-77
Identities = 144/367 (39%), Positives = 223/367 (60%), Gaps = 9/367 (2%)
Query: 1401 ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWT 1460
ATT +D RV+++MI + R ++GNP + H G A +EKAR +VA+++ P EI +T
Sbjct: 9 ATTRVDDRVLEEMIVFYREKYGNP-NSAHGMGIEANLHMEKAREKVAKVLGVSPSEIFFT 67
Query: 1461 SGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLI 1520
S ATES N +K A ++KR + IIT EHK+VL++++ L GF+V Y+ + G++
Sbjct: 68 SCATESINWILKTVAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVV 127
Query: 1521 TLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGEL--CRSKGVIFHCDAAQAVGKIDI 1578
L +LE+ + DT LVS+M NNE+G IQP+ ++ + ++K + H DA Q +GKI
Sbjct: 128 KLEELEKLVDEDTFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQTIGKIPF 187
Query: 1579 NIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIV 1638
+++ +VD SFSAHK +GPKG+G YIR+ I IHGGG E GLRSGT IV
Sbjct: 188 SLEKLEVDYASFSAHKFHGPKGVGITYIRKGV--PIRPLIHGGGQERGLRSGTQNVPGIV 245
Query: 1639 GMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIE 1698
G A +A E+ E K + L+ +L +GLM +I + +P+ L++SF I
Sbjct: 246 GAARAMEIAVEELSEAAKHMEKLRSKLVSGLM--NLGAHIITPLEISLPNTLSVSFPNIR 303
Query: 1699 GESL--LMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEID 1756
G +L L++ I VS+ SACTS +VL A+G + +A +IR ++ ++ TE+E+D
Sbjct: 304 GSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVD 363
Query: 1757 FTIKLLK 1763
+ +K ++
Sbjct: 364 YFLKKIE 370
|
| >d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} Length = 408 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Probable cysteine desulfurase SufS species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Score = 248 bits (634), Expect = 5e-73
Identities = 90/393 (22%), Positives = 147/393 (37%), Gaps = 32/393 (8%)
Query: 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
+D +AT+ V++K++ Y N H A A E RN+VA+ I A
Sbjct: 26 LDNAATSQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPR 85
Query: 61 I-IWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDS-IRKLENDGFRVTYLKP 118
++T ATE+ NL K G IIT EH S L G + +++
Sbjct: 86 EIVYTRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQL 145
Query: 119 KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVG 178
L + + T LV+V+ ++N +G + P EI +L G DA Q+
Sbjct: 146 DEQESFDLEHFKTLLSEKTKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAP 205
Query: 179 KIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGH----------- 227
+++Q D + S HK+ P GIG LY + + GG
Sbjct: 206 HYPLDVQLIDCDWLVASGHKMCAPTGIGFLYGKEEILEAMPPFFGGGEMIAEVFFDHFTT 265
Query: 228 ---EYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYING 284
+ +GT A + + +G A E + + I ++ + G
Sbjct: 266 GELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQIPQLRLYG 325
Query: 285 DMNNRIPHNLNISFNF----IEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDE 340
SFN + ++ IA+ SG CT +P + L
Sbjct: 326 PNPKHGDRAALASFNVAGLHASDVATMVDQDGIAIRSGHHCT----QPLHRLFD------ 375
Query: 341 LAHSSIRFTIGRFTTEKEIDFTIKLLK-MKEFF 372
A S R ++ + T++EID ++ L+ FF
Sbjct: 376 -ASGSARASLYFYNTKEEIDLFLQSLQATIRFF 407
|
| >d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} Length = 408 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Probable cysteine desulfurase SufS species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Score = 242 bits (619), Expect = 4e-71
Identities = 89/389 (22%), Positives = 144/389 (37%), Gaps = 32/389 (8%)
Query: 1401 ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREI-IW 1459
AT+ V++K++ Y N H A A E RN+VA+ I A ++
Sbjct: 30 ATSQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVY 89
Query: 1460 TSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDS-IRKLENDGFRVTYLKPKNNG 1518
T ATE+ NL K G IIT EH S L G + +++
Sbjct: 90 TRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQE 149
Query: 1519 LITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDI 1578
L + + T LV+V+ ++N +G + P EI +L G DA Q+ +
Sbjct: 150 SFDLEHFKTLLSEKTKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHYPL 209
Query: 1579 NIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGH--------------E 1624
++Q D + S HK+ P GIG LY + + GG
Sbjct: 210 DVQLIDCDWLVASGHKMCAPTGIGFLYGKEEILEAMPPFFGGGEMIAEVFFDHFTTGELP 269
Query: 1625 YGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNN 1684
+ +GT A + + +G A E + + I ++ + G
Sbjct: 270 HKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQIPQLRLYGPNPK 329
Query: 1685 RIPHNLNISFNF----IEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHS 1740
SFN + ++ IA+ SG CT +P + L A
Sbjct: 330 HGDRAALASFNVAGLHASDVATMVDQDGIAIRSGHHCT----QPLHRLFD-------ASG 378
Query: 1741 SIRFTIGRFTTEKEIDFTIKLLK-MKEFF 1768
S R ++ + T++EID ++ L+ FF
Sbjct: 379 SARASLYFYNTKEEIDLFLQSLQATIRFF 407
|
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} Length = 405 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Score = 248 bits (634), Expect = 5e-73
Identities = 80/384 (20%), Positives = 139/384 (36%), Gaps = 28/384 (7%)
Query: 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
+D +A+ +V+D + R + H A + +E R + I A E
Sbjct: 26 LDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAE 85
Query: 61 IIW-TSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDGFRVTYLKP 118
+ G TE NL + + G +II Q EH + + + L G + +
Sbjct: 86 ELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPL 145
Query: 119 KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVG 178
+G + L L T L+++ V+N +G P+ E+ L G D AQAV
Sbjct: 146 NPDGTLQLETLPTLFDEKTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVM 205
Query: 179 KIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGH----------- 227
+++Q D FS HK+YGP GIG LY++ + GG
Sbjct: 206 HHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKEALLQEMPPWEGGGSMIATVSLSEGTT 265
Query: 228 ----EYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYIN 283
+ +GT T I+G+G A + +ES+ ++ +
Sbjct: 266 WTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESVPDLTLY 325
Query: 284 GDMNNRIPHNLNISFNFIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAH 343
G N N+ + + IAV +G C ++
Sbjct: 326 GPQNRLGVIAFNLGKHHAYDVGSFLDNYGIAVRTGHHCAMP------LMAYYN-----VP 374
Query: 344 SSIRFTIGRFTTEKEIDFTIKLLK 367
+ R ++ + T +E+D + L+
Sbjct: 375 AMCRASLAMYNTHEEVDRLVTGLQ 398
|
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} Length = 405 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Score = 243 bits (620), Expect = 3e-71
Identities = 79/380 (20%), Positives = 136/380 (35%), Gaps = 28/380 (7%)
Query: 1401 ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIW- 1459
A+ +V+D + R + H A + +E R + I A E +
Sbjct: 30 ASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVF 89
Query: 1460 TSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDGFRVTYLKPKNNG 1518
G TE NL + + G +II Q EH + + + L G + + +G
Sbjct: 90 VRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDG 149
Query: 1519 LITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDI 1578
+ L L T L+++ V+N +G P+ E+ L G D AQAV +
Sbjct: 150 TLQLETLPTLFDEKTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHHPV 209
Query: 1579 NIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGH--------------- 1623
++Q D FS HK+YGP GIG LY++ + GG
Sbjct: 210 DVQALDCDFYVFSGHKLYGPTGIGILYVKEALLQEMPPWEGGGSMIATVSLSEGTTWTKA 269
Query: 1624 EYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMN 1683
+ +GT T I+G+G A + +ES+ ++ + G N
Sbjct: 270 PWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQN 329
Query: 1684 NRIPHNLNISFNFIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIR 1743
N+ + + IAV +G C ++ + R
Sbjct: 330 RLGVIAFNLGKHHAYDVGSFLDNYGIAVRTGHHCAMP------LMAYYN-----VPAMCR 378
Query: 1744 FTIGRFTTEKEIDFTIKLLK 1763
++ + T +E+D + L+
Sbjct: 379 ASLAMYNTHEEVDRLVTGLQ 398
|
| >d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Escherichia coli, gene dnaK [TaxId: 562]
Score = 184 bits (468), Expect = 1e-53
Identities = 77/180 (42%), Positives = 107/180 (59%), Gaps = 5/180 (2%)
Query: 640 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 699
IGID GTTNS VAI+ P VL++ G PSI+ Y DG+ VG+ AK +P+N
Sbjct: 3 IGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQN 62
Query: 700 TISSIKRFIARDLKNINTNS----FPYDF-QNKFGMLHIKTISGIKSPIEISAQIFITLK 754
T+ +IKR I R ++ P+ G ++ +P +ISA++ +K
Sbjct: 63 TLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMK 122
Query: 755 KIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKN 814
K AE+ + + AVITVPAYFND QRQ TK+A ++AGL V R++NEPT+AA+AY LDK
Sbjct: 123 KTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDKG 182
|
| >d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Escherichia coli, gene dnaK [TaxId: 562]
Score = 184 bits (468), Expect = 1e-53
Identities = 77/180 (42%), Positives = 107/180 (59%), Gaps = 5/180 (2%)
Query: 2036 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 2095
IGID GTTNS VAI+ P VL++ G PSI+ Y DG+ VG+ AK +P+N
Sbjct: 3 IGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQN 62
Query: 2096 TISSIKRFIARDLKNINTNS----FPYDF-QNKFGMLHIKTISGIKSPIEISAQIFITLK 2150
T+ +IKR I R ++ P+ G ++ +P +ISA++ +K
Sbjct: 63 TLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMK 122
Query: 2151 KIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKLDKN 2210
K AE+ + + AVITVPAYFND QRQ TK+A ++AGL V R++NEPT+AA+AY LDK
Sbjct: 123 KTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDKG 182
|
| >d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Cow (Bos taurus) [TaxId: 9913]
Score = 171 bits (434), Expect = 4e-49
Identities = 69/182 (37%), Positives = 101/182 (55%), Gaps = 9/182 (4%)
Query: 640 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 699
+GID G+T S V + ++ E++ + G PS V D + +G AK ++P N
Sbjct: 4 VGIDLGSTYSCVGVFQHGKVEIIANDQGNRTTPSYV-AFTDTERLIGDAAKNQVAMNPTN 62
Query: 700 TISSIKRFIARDLKNINTNS----FPYDFQNKFGMLHIKTISGIK----SPIEISAQIFI 751
T+ KR I R + S +P+ N G ++ + P E+S+ +
Sbjct: 63 TVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSMVLT 122
Query: 752 TLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKL 811
+K+IAE + + AV+TVPAYFND QRQ TK+A +AGLNVLR++NEPT+AAIAY L
Sbjct: 123 KMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGL 182
Query: 812 DK 813
DK
Sbjct: 183 DK 184
|
| >d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Cow (Bos taurus) [TaxId: 9913]
Score = 171 bits (434), Expect = 4e-49
Identities = 69/182 (37%), Positives = 101/182 (55%), Gaps = 9/182 (4%)
Query: 2036 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKN 2095
+GID G+T S V + ++ E++ + G PS V D + +G AK ++P N
Sbjct: 4 VGIDLGSTYSCVGVFQHGKVEIIANDQGNRTTPSYV-AFTDTERLIGDAAKNQVAMNPTN 62
Query: 2096 TISSIKRFIARDLKNINTNS----FPYDFQNKFGMLHIKTISGIK----SPIEISAQIFI 2147
T+ KR I R + S +P+ N G ++ + P E+S+ +
Sbjct: 63 TVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSMVLT 122
Query: 2148 TLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAYKL 2207
+K+IAE + + AV+TVPAYFND QRQ TK+A +AGLNVLR++NEPT+AAIAY L
Sbjct: 123 KMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGL 182
Query: 2208 DK 2209
DK
Sbjct: 183 DK 184
|
| >d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Escherichia coli, gene dnaK [TaxId: 562]
Score = 152 bits (386), Expect = 2e-42
Identities = 72/203 (35%), Positives = 110/203 (54%), Gaps = 21/203 (10%)
Query: 812 DKNIFEGIFAVYDLGGGTFDISILKFK----NGVFKVLSVGGDSNLGGDDFDYCLFSWIV 867
++ I AVYDLGGGTFDISI++ F+VL+ GD++LGG+DFD L +++V
Sbjct: 2 NRTI-----AVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLV 56
Query: 868 KNAFLKKLSY------KDVNILMIKSREIKELLSYQSSVKLNVK-----LSDKKIVNITI 916
+ F K + L + + K LS +N+ + K +NI +
Sbjct: 57 EE-FKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKV 115
Query: 917 DMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTT 976
+ ++ + LVNR+I L AL DA L++ DI++VILVGG TRM + + V+ FF
Sbjct: 116 TRAKLESLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKE 175
Query: 977 LLTSIDPDKAVVFGAAIQANFLS 999
++PD+AV GAA+Q L+
Sbjct: 176 PRKDVNPDEAVAIGAAVQGGVLT 198
|
| >d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Escherichia coli, gene dnaK [TaxId: 562]
Score = 152 bits (386), Expect = 2e-42
Identities = 72/203 (35%), Positives = 110/203 (54%), Gaps = 21/203 (10%)
Query: 2208 DKNIFEGIFAVYDLGGGTFDISILKFK----NGVFKVLSVGGDSNLGGDDFDYCLFSWIV 2263
++ I AVYDLGGGTFDISI++ F+VL+ GD++LGG+DFD L +++V
Sbjct: 2 NRTI-----AVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLV 56
Query: 2264 KNAFLKKLSY------KDVNILMIKSREIKELLSYQSSVKLNVK-----LSDKKIVNITI 2312
+ F K + L + + K LS +N+ + K +NI +
Sbjct: 57 EE-FKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKV 115
Query: 2313 DMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTT 2372
+ ++ + LVNR+I L AL DA L++ DI++VILVGG TRM + + V+ FF
Sbjct: 116 TRAKLESLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKE 175
Query: 2373 LLTSIDPDKAVVFGAAIQANFLS 2395
++PD+AV GAA+Q L+
Sbjct: 176 PRKDVNPDEAVAIGAAVQGGVLT 198
|
| >d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Length = 193 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Cow (Bos taurus) [TaxId: 9913]
Score = 150 bits (381), Expect = 7e-42
Identities = 66/195 (33%), Positives = 104/195 (53%), Gaps = 12/195 (6%)
Query: 812 DKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAF 871
++N+ ++DLGGGTFD+SIL ++G+F+V S GD++LGG+DFD + + +
Sbjct: 4 ERNV-----LIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFK 58
Query: 872 LK-----KLSYKDVNILMIKSREIKELLSYQSSVKLNV-KLSDKKIVNITIDMKQFFTIT 925
K + + V L K LS + + + L + +I +F +
Sbjct: 59 RKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELN 118
Query: 926 QHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFK-TTLLTSIDPD 984
L T+ KAL DA L I++++LVGGSTR+ I + + +FF L SI+PD
Sbjct: 119 ADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPD 178
Query: 985 KAVVFGAAIQANFLS 999
+AV +GAA+QA LS
Sbjct: 179 EAVAYGAAVQAAILS 193
|
| >d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Length = 193 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Cow (Bos taurus) [TaxId: 9913]
Score = 150 bits (381), Expect = 7e-42
Identities = 66/195 (33%), Positives = 104/195 (53%), Gaps = 12/195 (6%)
Query: 2208 DKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAF 2267
++N+ ++DLGGGTFD+SIL ++G+F+V S GD++LGG+DFD + + +
Sbjct: 4 ERNV-----LIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFK 58
Query: 2268 LK-----KLSYKDVNILMIKSREIKELLSYQSSVKLNV-KLSDKKIVNITIDMKQFFTIT 2321
K + + V L K LS + + + L + +I +F +
Sbjct: 59 RKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELN 118
Query: 2322 QHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFK-TTLLTSIDPD 2380
L T+ KAL DA L I++++LVGGSTR+ I + + +FF L SI+PD
Sbjct: 119 ADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPD 178
Query: 2381 KAVVFGAAIQANFLS 2395
+AV +GAA+QA LS
Sbjct: 179 EAVAYGAAVQAAILS 193
|
| >d1kona_ e.39.1.1 (A:) Hypothetical protein YebC {Escherichia coli [TaxId: 562]} Length = 244 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: YebC-like superfamily: YebC-like family: YebC-like domain: Hypothetical protein YebC species: Escherichia coli [TaxId: 562]
Score = 144 bits (364), Expect = 6e-39
Identities = 76/210 (36%), Positives = 125/210 (59%), Gaps = 11/210 (5%)
Query: 1206 DAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDANIPKNNIFRAIQKNNSNI 1264
DAKRGKI T+I+REL A G +PD N +LR A++KAL N+ ++ + RAI +
Sbjct: 16 DAKRGKIFTKIIRELVTAAKLGGGDPDANPRLRAAVDKALSNNMTRDTLNRAIARGVGG- 74
Query: 1265 KNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNKNGGNLSKEGSVLFMFK 1324
+++ N + YEGY G AI+++C+++NR RTV+ +R+ F+K GGNL +GSV ++F
Sbjct: 75 -DDDANMETIIYEGYGPGGTAIMIECLSDNRNRTVAEVRHAFSKCGGNLGTDGSVAYLFS 133
Query: 1325 HCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPSKFIEIKNSLEMTGFKAE 1384
G + F ++T+++ ALE GAED + D I + T+ + +++++LE G KA+
Sbjct: 134 KKGVISFEKGD-EDTIMEAALEAGAEDVVTYDDGAIDVYTAWEEMGKVRDALEAAGLKAD 192
Query: 1385 SSGIVMRPYTNIVFKDATTPIDPRVVDKMI 1414
S+ + M P T +D K++
Sbjct: 193 SAEVSMIPSTKA-------DMDAETAPKLM 215
|
| >d1yuwa1 b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: DnaK species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 133 bits (335), Expect = 4e-36
Identities = 57/125 (45%), Positives = 80/125 (64%)
Query: 1006 DNFLLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDE 1065
+ LLLDV PLSLGIET GG++ +I RNTTIP + FTT+ DNQ + I+V +GE
Sbjct: 5 QDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERA 64
Query: 1066 LVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYEKISGKKKFITIKPFYN 1125
+ K+ +L FEL IPP P G +I+VT+ +DA+G+L++ A +K +GK+ ITI
Sbjct: 65 MTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITITNDKG 124
Query: 1126 MNLDE 1130
E
Sbjct: 125 RLSKE 129
|
| >d1yuwa1 b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: DnaK species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 133 bits (335), Expect = 4e-36
Identities = 57/125 (45%), Positives = 80/125 (64%)
Query: 2402 DNFLLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDE 2461
+ LLLDV PLSLGIET GG++ +I RNTTIP + FTT+ DNQ + I+V +GE
Sbjct: 5 QDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERA 64
Query: 2462 LVKNCQVLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYEKISGKKKFITIKPFYN 2521
+ K+ +L FEL IPP P G +I+VT+ +DA+G+L++ A +K +GK+ ITI
Sbjct: 65 MTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITITNDKG 124
Query: 2522 MNLDE 2526
E
Sbjct: 125 RLSKE 129
|
| >d1lfpa_ e.39.1.1 (A:) Hypothetical protein aq1575 {Aquifex aeolicus [TaxId: 63363]} Length = 243 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: YebC-like superfamily: YebC-like family: YebC-like domain: Hypothetical protein aq1575 species: Aquifex aeolicus [TaxId: 63363]
Score = 131 bits (331), Expect = 2e-34
Identities = 68/199 (34%), Positives = 104/199 (52%), Gaps = 3/199 (1%)
Query: 1206 DAKRGKICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDANIPKNNIFRAIQKNNSNI 1264
DA+RGK+ ++++RE+ VA G NP+ N +LR AIE+A AN+P NI RAI
Sbjct: 14 DAQRGKLFSKLIREIIVATRLGGPNPEFNPRLRTAIEQAKKANMPWENIERAI--KKGAG 71
Query: 1265 KNENINYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNKNGGNLSKEGSVLFMFK 1324
+ E + EV YEGY+ G A++V T+NR RT S +R++F K+GGNL G V ++F+
Sbjct: 72 ELEGEQFEEVIYEGYAPGGVAVMVLATTDNRNRTTSEVRHVFTKHGGNLGASGCVSYLFE 131
Query: 1325 HCGQLLFLPNTKKNTLLDLALEKGAEDFLIDKDNKITIITSPSKFIEIKNSLEMTGFKAE 1384
G + L + + + + I T P + E+K +LE G E
Sbjct: 132 RKGYIEVPAKEVSEEELLEKAIEVGAEDVQPGEEVHIIYTVPEELYEVKENLEKLGVPIE 191
Query: 1385 SSGIVMRPYTNIVFKDATT 1403
+ I +P + + D T
Sbjct: 192 KAQITWKPISTVQINDEET 210
|
| >d1r9pa_ d.224.1.2 (A:) NifU-like protein HI0377 {Haemophilus influenzae [TaxId: 727]} Length = 134 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: SufE/NifU superfamily: SufE/NifU family: NifU/IscU domain domain: NifU-like protein HI0377 species: Haemophilus influenzae [TaxId: 727]
Score = 127 bits (320), Expect = 2e-34
Identities = 77/97 (79%), Positives = 89/97 (91%)
Query: 373 MSYSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKT 432
M+YSEKV+DHYENPRNVG +K D+ VGTGMVGAPACGDVM+LQIKV+ NG+I DAKFKT
Sbjct: 1 MAYSEKVIDHYENPRNVGSLDKKDSNVGTGMVGAPACGDVMQLQIKVDDNGIIEDAKFKT 60
Query: 433 YGCGSAIASSSLVTEWVKGKTLDEAMSIKNTDIAEEL 469
YGCGSAIASSSL+TEWVKGK+L+EA +IKN+ IAEEL
Sbjct: 61 YGCGSAIASSSLITEWVKGKSLEEAGAIKNSQIAEEL 97
|
| >d1r9pa_ d.224.1.2 (A:) NifU-like protein HI0377 {Haemophilus influenzae [TaxId: 727]} Length = 134 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: SufE/NifU superfamily: SufE/NifU family: NifU/IscU domain domain: NifU-like protein HI0377 species: Haemophilus influenzae [TaxId: 727]
Score = 127 bits (320), Expect = 2e-34
Identities = 77/97 (79%), Positives = 89/97 (91%)
Query: 1769 MSYSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKT 1828
M+YSEKV+DHYENPRNVG +K D+ VGTGMVGAPACGDVM+LQIKV+ NG+I DAKFKT
Sbjct: 1 MAYSEKVIDHYENPRNVGSLDKKDSNVGTGMVGAPACGDVMQLQIKVDDNGIIEDAKFKT 60
Query: 1829 YGCGSAIASSSLVTEWVKGKTLDEAMSIKNTDIAEEL 1865
YGCGSAIASSSL+TEWVKGK+L+EA +IKN+ IAEEL
Sbjct: 61 YGCGSAIASSSLITEWVKGKSLEEAGAIKNSQIAEEL 97
|
| >d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]} Length = 404 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Kynureninase species: Pseudomonas fluorescens [TaxId: 294]
Score = 135 bits (339), Expect = 4e-34
Identities = 58/391 (14%), Positives = 121/391 (30%), Gaps = 50/391 (12%)
Query: 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
+D ++ + + + ++GN R+ E+ N +A LI A E
Sbjct: 31 LDGNSLGARPVAALARAQAVIAEEWGNGLIRSW-NSAGWRDLSERLGNRLATLIGARDGE 89
Query: 61 IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN 120
++ T + + + A R + TE + + + +
Sbjct: 90 VVVTDTTSINLFKVLSAALRVQATRSPERRVIVTETSNFP-TDLYIAEGLADMLQQGYTL 148
Query: 121 NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKI 180
+ + +L + I DT +V + VN + G + + + L G + D A + G +
Sbjct: 149 RLVDSPEELPQAIDQDTAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGAV 208
Query: 181 DINIQNYKVDLMSFSAHKI--YGPKGIGALYIRRNPRTRIEAQIHGGGHE---------- 228
+++ D +K GP +++ + + G
Sbjct: 209 PVDLHQAGADYAIGCTYKYLNGGPGSQAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRY 268
Query: 229 ------YGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLME---SIEE 279
GT + + + L+R L+ L+E + E
Sbjct: 269 EPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQRCAAHE 328
Query: 280 IYING--DMNNRIPHNLNISFNFIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGC 337
+ + + R H +SF EG +++ A+ D V G
Sbjct: 329 LTLVTPREHAKRGSH---VSFEHPEGYAVIQALIDRGV-IGDYR---------------- 368
Query: 338 NDELAHSSIRFTIGRF-TTEKEIDFTIKLLK 367
+RF TT E+ +++L
Sbjct: 369 ----EPRIMRFGFTPLYTTFTEVWDAVQILG 395
|
| >d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]} Length = 404 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Kynureninase species: Pseudomonas fluorescens [TaxId: 294]
Score = 132 bits (331), Expect = 4e-33
Identities = 57/387 (14%), Positives = 118/387 (30%), Gaps = 50/387 (12%)
Query: 1401 ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWT 1460
+ + + + ++GN R+ E+ N +A LI A E++ T
Sbjct: 35 SLGARPVAALARAQAVIAEEWGNGLIRSW-NSAGWRDLSERLGNRLATLIGARDGEVVVT 93
Query: 1461 SGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLI 1520
+ + + A R + TE + + + + +
Sbjct: 94 DTTSINLFKVLSAALRVQATRSPERRVIVTETSNFP-TDLYIAEGLADMLQQGYTLRLVD 152
Query: 1521 TLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINI 1580
+ +L + I DT +V + VN + G + + + L G + D A + G + +++
Sbjct: 153 SPEELPQAIDQDTAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGAVPVDL 212
Query: 1581 QNYKVDLMSFSAHKI--YGPKGIGALYIRRNPRTRIEAQIHGGGHE-------------- 1624
D +K GP +++ + + G
Sbjct: 213 HQAGADYAIGCTYKYLNGGPGSQAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSN 272
Query: 1625 --YGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLME---SIEEIYIN 1679
GT + + + L+R L+ L+E + E+ +
Sbjct: 273 GIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQRCAAHELTLV 332
Query: 1680 G--DMNNRIPHNLNISFNFIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDEL 1737
+ R H +SF EG +++ A+ D V G
Sbjct: 333 TPREHAKRGSH---VSFEHPEGYAVIQALIDRGV-IGDYR-------------------- 368
Query: 1738 AHSSIRFTIGRF-TTEKEIDFTIKLLK 1763
+RF TT E+ +++L
Sbjct: 369 EPRIMRFGFTPLYTTFTEVWDAVQILG 395
|
| >d1dkza2 b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxId: 562]} Length = 118 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: DnaK species: Escherichia coli [TaxId: 562]
Score = 125 bits (316), Expect = 4e-34
Identities = 57/114 (50%), Positives = 81/114 (71%)
Query: 1009 LLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVK 1068
LLLDV PLSLGIET+GG++ +I +NTTIP +S F+T +DNQ+A++I V+QGE +
Sbjct: 2 LLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVSIHVLQGERKRAA 61
Query: 1069 NCQVLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYEKISGKKKFITIKP 1122
+ + L F L I P P G +I+VT+ +DADG+L + A +K SGK++ ITIK
Sbjct: 62 DNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKA 115
|
| >d1dkza2 b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxId: 562]} Length = 118 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: DnaK species: Escherichia coli [TaxId: 562]
Score = 125 bits (316), Expect = 4e-34
Identities = 57/114 (50%), Positives = 81/114 (71%)
Query: 2405 LLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVK 2464
LLLDV PLSLGIET+GG++ +I +NTTIP +S F+T +DNQ+A++I V+QGE +
Sbjct: 2 LLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVSIHVLQGERKRAA 61
Query: 2465 NCQVLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYEKISGKKKFITIKP 2518
+ + L F L I P P G +I+VT+ +DADG+L + A +K SGK++ ITIK
Sbjct: 62 DNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKA 115
|
| >d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} Length = 462 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Ornithine decarboxylase major domain domain: Ornithine decarboxylase major domain species: Lactobacillus sp., strain 30a [TaxId: 1591]
Score = 131 bits (330), Expect = 2e-32
Identities = 50/402 (12%), Positives = 102/402 (25%), Gaps = 72/402 (17%)
Query: 38 TAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHK 97
E A A++ AD + + G + + N + A G ++ + HK
Sbjct: 63 IHEGPAVAAEKHAARVYNAD--KTYFVLGGSSNANNTVTSALV---SNGDLVLFDRNNHK 117
Query: 98 SVLDSIRKLENDGFRVTYLKPKNNG-----------------LITLSQLEEKICSDTILV 140
SV +S + G L E +
Sbjct: 118 SVYNSALAMAGGRPVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRL 177
Query: 141 SVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQ-------------NY 187
+V+ + G I E+ + D+A + I +
Sbjct: 178 AVIQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPED 237
Query: 188 KVDLMSFSAHKIYGPKGIGALYIRRN----PRTRIEAQIHGGGHEYGLRSGTLATHQIVG 243
++ S HK + +++ + R H S +
Sbjct: 238 PGIIVVQSVHKQQAGFSQTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSPFYPMYAA 297
Query: 244 MGEAFRLARIEMKEEL-KRILFLQKRLYNGLME---------------------SIEEIY 281
+ + E +L +L L++ E++
Sbjct: 298 LDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMA 357
Query: 282 INGDMNNRIPHNLNISFNFIEGESLLM-------AIKDIAVSSGSACTS--ASLEPSYVL 332
N D ++ + I +G + + L
Sbjct: 358 NNIDYWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYL 417
Query: 333 RALGCNDELA-HSSIRFTIGRFTTEKEIDFTIK-LLKMKEFF 372
R G E + +SI F + T +++ I LL+++
Sbjct: 418 RDHGIIPEKSDLNSILFLMTPAETPAKMNNLITQLLQLQRLI 459
|
| >d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} Length = 462 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Ornithine decarboxylase major domain domain: Ornithine decarboxylase major domain species: Lactobacillus sp., strain 30a [TaxId: 1591]
Score = 131 bits (330), Expect = 2e-32
Identities = 50/402 (12%), Positives = 102/402 (25%), Gaps = 72/402 (17%)
Query: 1434 TAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHK 1493
E A A++ AD + + G + + N + A G ++ + HK
Sbjct: 63 IHEGPAVAAEKHAARVYNAD--KTYFVLGGSSNANNTVTSALV---SNGDLVLFDRNNHK 117
Query: 1494 SVLDSIRKLENDGFRVTYLKPKNNG-----------------LITLSQLEEKICSDTILV 1536
SV +S + G L E +
Sbjct: 118 SVYNSALAMAGGRPVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRL 177
Query: 1537 SVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQ-------------NY 1583
+V+ + G I E+ + D+A + I +
Sbjct: 178 AVIQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPED 237
Query: 1584 KVDLMSFSAHKIYGPKGIGALYIRRN----PRTRIEAQIHGGGHEYGLRSGTLATHQIVG 1639
++ S HK + +++ + R H S +
Sbjct: 238 PGIIVVQSVHKQQAGFSQTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSPFYPMYAA 297
Query: 1640 MGEAFRLARIEMKEEL-KRILFLQKRLYNGLME---------------------SIEEIY 1677
+ + E +L +L L++ E++
Sbjct: 298 LDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMA 357
Query: 1678 INGDMNNRIPHNLNISFNFIEGESLLM-------AIKDIAVSSGSACTS--ASLEPSYVL 1728
N D ++ + I +G + + L
Sbjct: 358 NNIDYWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYL 417
Query: 1729 RALGCNDELA-HSSIRFTIGRFTTEKEIDFTIK-LLKMKEFF 1768
R G E + +SI F + T +++ I LL+++
Sbjct: 418 RDHGIIPEKSDLNSILFLMTPAETPAKMNNLITQLLQLQRLI 459
|
| >d1wfza_ d.224.1.2 (A:) Iron-sulfur cluster protein U (IscU) {Mouse (Mus musculus), mitochondrial [TaxId: 10090]} Length = 130 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: SufE/NifU superfamily: SufE/NifU family: NifU/IscU domain domain: Iron-sulfur cluster protein U (IscU) species: Mouse (Mus musculus), mitochondrial [TaxId: 10090]
Score = 120 bits (301), Expect = 6e-32
Identities = 64/89 (71%), Positives = 76/89 (85%)
Query: 381 DHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKTYGCGSAIA 440
ENPRNVG +K VGTG+VGAPACGDVMKLQI+V++ G I DA+FKT+GCGSAIA
Sbjct: 5 SSGENPRNVGSLDKTSKNVGTGLVGAPACGDVMKLQIQVDEKGKIVDARFKTFGCGSAIA 64
Query: 441 SSSLVTEWVKGKTLDEAMSIKNTDIAEEL 469
SSSL TEWVKGKT++EA++IKNTDIA+EL
Sbjct: 65 SSSLATEWVKGKTVEEALTIKNTDIAKEL 93
|
| >d1wfza_ d.224.1.2 (A:) Iron-sulfur cluster protein U (IscU) {Mouse (Mus musculus), mitochondrial [TaxId: 10090]} Length = 130 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: SufE/NifU superfamily: SufE/NifU family: NifU/IscU domain domain: Iron-sulfur cluster protein U (IscU) species: Mouse (Mus musculus), mitochondrial [TaxId: 10090]
Score = 120 bits (301), Expect = 6e-32
Identities = 64/89 (71%), Positives = 76/89 (85%)
Query: 1777 DHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKTYGCGSAIA 1836
ENPRNVG +K VGTG+VGAPACGDVMKLQI+V++ G I DA+FKT+GCGSAIA
Sbjct: 5 SSGENPRNVGSLDKTSKNVGTGLVGAPACGDVMKLQIQVDEKGKIVDARFKTFGCGSAIA 64
Query: 1837 SSSLVTEWVKGKTLDEAMSIKNTDIAEEL 1865
SSSL TEWVKGKT++EA++IKNTDIA+EL
Sbjct: 65 SSSLATEWVKGKTVEEALTIKNTDIAKEL 93
|
| >d1u00a2 b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]} Length = 115 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: Chaperone protein hscA (Hsc66) species: Escherichia coli [TaxId: 562]
Score = 117 bits (293), Expect = 5e-31
Identities = 72/114 (63%), Positives = 92/114 (80%)
Query: 1011 LDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNC 1070
+DVIPLSLG+ET+GGLVEK+I RNTTIP + + +FTTFKD QTA++I V+QGE ELV++C
Sbjct: 1 MDVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDC 60
Query: 1071 QVLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYEKISGKKKFITIKPFY 1124
+ LA F LR IP +PAG A I+VT+QVDADGLLS+ A EK +G + I +KP Y
Sbjct: 61 RSLARFALRGIPALPAGGAHIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSY 114
|
| >d1u00a2 b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]} Length = 115 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: Chaperone protein hscA (Hsc66) species: Escherichia coli [TaxId: 562]
Score = 117 bits (293), Expect = 5e-31
Identities = 72/114 (63%), Positives = 92/114 (80%)
Query: 2407 LDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNC 2466
+DVIPLSLG+ET+GGLVEK+I RNTTIP + + +FTTFKD QTA++I V+QGE ELV++C
Sbjct: 1 MDVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDC 60
Query: 2467 QVLANFELRDIPPMPAGRARIKVTYQVDADGLLSIFAYEKISGKKKFITIKPFY 2520
+ LA F LR IP +PAG A I+VT+QVDADGLLS+ A EK +G + I +KP Y
Sbjct: 61 RSLARFALRGIPALPAGGAHIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSY 114
|
| >d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 382 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 122 bits (305), Expect = 6e-30
Identities = 38/388 (9%), Positives = 93/388 (23%), Gaps = 53/388 (13%)
Query: 7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSG 66
+ V + + + ++ ++ R + + +
Sbjct: 12 IILSGAVQKALDVPS------LGHTSPEFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGS 65
Query: 67 ATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITL 126
T ++ K+++ V T S + K + L
Sbjct: 66 GTLGWDIFASNFILSKAP-NKNVLVVSTGTFSDRFADCLRSYGAQVDVVRPLKIGESVPL 124
Query: 127 SQLEEKICSDTILVSVMLVN---NEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDIN 183
+ EK+ ++ + + + S F DA ++G +
Sbjct: 125 ELITEKLSQNSYGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCEEFE 184
Query: 184 IQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGH--------------- 227
+ VD ++ K I P G+ G
Sbjct: 185 FDEWGVDFALTASQKAIGAPAGLSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIME 244
Query: 228 ----EYGLRSGTLATHQIVGMGEAFRLARIEMKE-ELKRILFLQKRLYNGLMESIEEIYI 282
G T I + A + E + + L+ ++ +
Sbjct: 245 NYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGLQLTSV 304
Query: 283 NGDMNNRIPHNLNISFNFIEGESLLMAIKD--IAVSSGSACTSASLEPSYVLRALGCNDE 340
+ +N H L + + ++ +K + ++ G +
Sbjct: 305 SRYPSNMSAHGLT-AVYVADPPDVIAFLKSHGVVIAGGIHK------------------D 345
Query: 341 LAHSSIRF-TIGRFTTEKEIDFTIKLLK 367
+ IR +G K + +
Sbjct: 346 IGPKYIRIGHMGVTACNKNLPYMKNCFD 373
|
| >d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 382 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 122 bits (305), Expect = 6e-30
Identities = 38/388 (9%), Positives = 93/388 (23%), Gaps = 53/388 (13%)
Query: 1403 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSG 1462
+ V + + + ++ ++ R + + +
Sbjct: 12 IILSGAVQKALDVPS------LGHTSPEFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGS 65
Query: 1463 ATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITL 1522
T ++ K+++ V T S + K + L
Sbjct: 66 GTLGWDIFASNFILSKAP-NKNVLVVSTGTFSDRFADCLRSYGAQVDVVRPLKIGESVPL 124
Query: 1523 SQLEEKICSDTILVSVMLVN---NEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDIN 1579
+ EK+ ++ + + + S F DA ++G +
Sbjct: 125 ELITEKLSQNSYGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCEEFE 184
Query: 1580 IQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGH--------------- 1623
+ VD ++ K I P G+ G
Sbjct: 185 FDEWGVDFALTASQKAIGAPAGLSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIME 244
Query: 1624 ----EYGLRSGTLATHQIVGMGEAFRLARIEMKE-ELKRILFLQKRLYNGLMESIEEIYI 1678
G T I + A + E + + L+ ++ +
Sbjct: 245 NYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGLQLTSV 304
Query: 1679 NGDMNNRIPHNLNISFNFIEGESLLMAIKD--IAVSSGSACTSASLEPSYVLRALGCNDE 1736
+ +N H L + + ++ +K + ++ G +
Sbjct: 305 SRYPSNMSAHGLT-AVYVADPPDVIAFLKSHGVVIAGGIHK------------------D 345
Query: 1737 LAHSSIRF-TIGRFTTEKEIDFTIKLLK 1763
+ IR +G K + +
Sbjct: 346 IGPKYIRIGHMGVTACNKNLPYMKNCFD 373
|
| >d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} Length = 340 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Leishmania major [TaxId: 5664]
Score = 120 bits (301), Expect = 9e-30
Identities = 48/369 (13%), Positives = 104/369 (28%), Gaps = 40/369 (10%)
Query: 2 DYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREI 61
DYS + P+++D M + G+ + KA + +L+ ++
Sbjct: 7 DYSV--GMHPKILDLMAR---------DNMTQHAGYGQDSHCAKAARLIGELLERPDADV 55
Query: 62 IWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN 121
+ SG T++N +A A ++ + + H++ + K +
Sbjct: 56 HFISGGTQTNLIACSLALRPWEAVIATQLGHISTHETGAIEATGHKVVTAPCPDGKLRVA 115
Query: 122 GLITLSQLEEKICSDTILVSVMLVNNEIGVIQPI---LEIGELCRSKGVIFHCDAAQAVG 178
+ + + + E+G +I C+ G+ D A+
Sbjct: 116 DIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQELEDISASCKEHGLYLFLDGARLAS 175
Query: 179 KIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLAT 238
+ + + + ++ Y +A H R +A
Sbjct: 176 ALSSPVNDLTLADIARLTDMFYIGATKAGGMFGEALIILNDALKPNARHLIKQRGALMAK 235
Query: 239 HQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISF 298
++G+ + E + L GL + P N F
Sbjct: 236 GWLLGIQFEVLMKDNLFFELGAHSNKMAAILKAGLEACGIRLA--------WPSASNQLF 287
Query: 299 NFIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKE 358
+E A L + + + + +R T EKE
Sbjct: 288 PILENT-----------------MIAELNNDFDMYTVEPLKD-GTCIMRLCTSWATEEKE 329
Query: 359 IDFTIKLLK 367
+++LK
Sbjct: 330 CHRFVEVLK 338
|
| >d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} Length = 340 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Leishmania major [TaxId: 5664]
Score = 119 bits (298), Expect = 2e-29
Identities = 46/367 (12%), Positives = 103/367 (28%), Gaps = 38/367 (10%)
Query: 1400 DATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIW 1459
D + + P+++D M + G+ + KA + +L+ ++ +
Sbjct: 7 DYSVGMHPKILDLMAR---------DNMTQHAGYGQDSHCAKAARLIGELLERPDADVHF 57
Query: 1460 TSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGL 1519
SG T++N +A A ++ + + H++ + K + +
Sbjct: 58 ISGGTQTNLIACSLALRPWEAVIATQLGHISTHETGAIEATGHKVVTAPCPDGKLRVADI 117
Query: 1520 ITLSQLEEKICSDTILVSVMLVNNEIGVIQPI---LEIGELCRSKGVIFHCDAAQAVGKI 1576
+ + + E+G +I C+ G+ D A+ +
Sbjct: 118 ESALHENRSEHMVIPKLVYISNTTEVGTQYTKQELEDISASCKEHGLYLFLDGARLASAL 177
Query: 1577 DINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQ 1636
+ + + ++ Y +A H R +A
Sbjct: 178 SSPVNDLTLADIARLTDMFYIGATKAGGMFGEALIILNDALKPNARHLIKQRGALMAKGW 237
Query: 1637 IVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF 1696
++G+ + E + L GL + P N F
Sbjct: 238 LLGIQFEVLMKDNLFFELGAHSNKMAAILKAGLEACGIRLA--------WPSASNQLFPI 289
Query: 1697 IEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEID 1756
+E A L + + + + +R T EKE
Sbjct: 290 LENT-----------------MIAELNNDFDMYTVEPLKD-GTCIMRLCTSWATEEKECH 331
Query: 1757 FTIKLLK 1763
+++LK
Sbjct: 332 RFVEVLK 338
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} Length = 465 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Score = 122 bits (306), Expect = 2e-29
Identities = 70/434 (16%), Positives = 118/434 (27%), Gaps = 68/434 (15%)
Query: 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYG-------WTAEKAIEKARNEVAQLIYADPRE 60
P I L N S + + + +++ +L D
Sbjct: 35 PFLLPSSAVYIDLLTDSGTNAMSDHQWAAMITGDEAYAGSRNYYDLKDKAKELFNYD--Y 92
Query: 61 IIWTSGATESNNLAIKGAAHFYKKRG--KHIITVQTEHKSVLDSI--------RKLENDG 110
II + N+ + +K G K+ + + H + + +
Sbjct: 93 IIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVELNGCKAINIVTEK 152
Query: 111 FRVTYLKPKNNGLITLSQLEEKI---CSDTILVSVMLVNNEIGVIQP-----ILEIGELC 162
+ G + +L+E I +D I+ V V QP + E+ E+
Sbjct: 153 AFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIA 212
Query: 163 RSKGVIFHCDAAQAVGKIDINIQNYK-----------------VDLMSFSAHKIYGPKGI 205
+ G+ D+A+ D ++ SA K
Sbjct: 213 KQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIG 272
Query: 206 GALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFL 265
G + IR N A+ E + G LA + M + E L +
Sbjct: 273 GLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEY--LHYRIGQ 330
Query: 266 QKRLYNGLMESIEEI-------YINGDMNNRIPHNLNISFNFIEGESLLMAIKDIAVSSG 318
K L + L E+ I + D +P F + L SG
Sbjct: 331 VKYLGDRLREAGIPIQYPTGGHAVFVDCKKLVPQIPGDQFPAQAVINALYL------ESG 384
Query: 319 SACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFT-TEKEIDFTIKLLK--------MK 369
A G +R TI R T +D+ L +K
Sbjct: 385 VRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKEKFATLK 444
Query: 370 EFFMSYSEKVLDHY 383
Y VL H+
Sbjct: 445 GLEFEYEPPVLRHF 458
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} Length = 465 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Score = 122 bits (306), Expect = 2e-29
Identities = 70/434 (16%), Positives = 118/434 (27%), Gaps = 68/434 (15%)
Query: 1404 PIDPRVVDKMIPYLRVQFGNPASRNHIYG-------WTAEKAIEKARNEVAQLIYADPRE 1456
P I L N S + + + +++ +L D
Sbjct: 35 PFLLPSSAVYIDLLTDSGTNAMSDHQWAAMITGDEAYAGSRNYYDLKDKAKELFNYD--Y 92
Query: 1457 IIWTSGATESNNLAIKGAAHFYKKRG--KHIITVQTEHKSVLDSI--------RKLENDG 1506
II + N+ + +K G K+ + + H + + +
Sbjct: 93 IIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVELNGCKAINIVTEK 152
Query: 1507 FRVTYLKPKNNGLITLSQLEEKI---CSDTILVSVMLVNNEIGVIQP-----ILEIGELC 1558
+ G + +L+E I +D I+ V V QP + E+ E+
Sbjct: 153 AFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIA 212
Query: 1559 RSKGVIFHCDAAQAVGKIDINIQNYK-----------------VDLMSFSAHKIYGPKGI 1601
+ G+ D+A+ D ++ SA K
Sbjct: 213 KQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIG 272
Query: 1602 GALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFL 1661
G + IR N A+ E + G LA + M + E L +
Sbjct: 273 GLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEY--LHYRIGQ 330
Query: 1662 QKRLYNGLMESIEEI-------YINGDMNNRIPHNLNISFNFIEGESLLMAIKDIAVSSG 1714
K L + L E+ I + D +P F + L SG
Sbjct: 331 VKYLGDRLREAGIPIQYPTGGHAVFVDCKKLVPQIPGDQFPAQAVINALYL------ESG 384
Query: 1715 SACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFT-TEKEIDFTIKLLK--------MK 1765
A G +R TI R T +D+ L +K
Sbjct: 385 VRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKEKFATLK 444
Query: 1766 EFFMSYSEKVLDHY 1779
Y VL H+
Sbjct: 445 GLEFEYEPPVLRHF 458
|
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} Length = 450 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Score = 117 bits (293), Expect = 9e-28
Identities = 58/400 (14%), Positives = 108/400 (27%), Gaps = 58/400 (14%)
Query: 5 ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEK-ARNEVAQLIYADPREI-- 61
T D V M + + + Y +A I+ N VA L +A +
Sbjct: 62 CQTWDDENVHKLMDLSINKNWIDK----EEYPQSAA--IDLRCVNMVADLWHAPAPKNGQ 115
Query: 62 ---IWTSGATESNNLAIKGAAHFYKKRGKH--------IITVQTEHKSVLDSIRKLENDG 110
T G++E+ L ++KR + + R + +
Sbjct: 116 AVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGPVQICWHKFARYWDVEL 175
Query: 111 FRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP------ILEIGELCRS 164
+ + ++ E +TI V G + L+ +
Sbjct: 176 REIPM--RPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTG 233
Query: 165 KGVIFHCDAAQAVGKIDINIQNYK-------VDLMSFSAHKI-YGPKGIGALYIRR---- 212
+ H DAA + V +S S HK P G G + R
Sbjct: 234 IDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEAL 293
Query: 213 NPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIE-MKEELKRILFLQKRLYN 271
GG + + Q++ F E + + L +
Sbjct: 294 PQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLAD 353
Query: 272 GLMESIE-EIYINGDMNNRIPHNLNISFNFIEGESLLMAIKDIA---VSSGSACTSASLE 327
+ + E G + IP + F +GE + D++ G
Sbjct: 354 EIAKLGPYEFICTGRPDEGIP---AVCFKLKDGEDPGYTLYDLSERLRLRGWQV------ 404
Query: 328 PSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK 367
P++ L + +R R + ++ K
Sbjct: 405 PAFTLGGEATD----IVVMRIMCRRGFEMDFAELLLEDYK 440
|
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} Length = 450 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Score = 117 bits (293), Expect = 9e-28
Identities = 58/400 (14%), Positives = 108/400 (27%), Gaps = 58/400 (14%)
Query: 1401 ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEK-ARNEVAQLIYADPREI-- 1457
T D V M + + + Y +A I+ N VA L +A +
Sbjct: 62 CQTWDDENVHKLMDLSINKNWIDK----EEYPQSAA--IDLRCVNMVADLWHAPAPKNGQ 115
Query: 1458 ---IWTSGATESNNLAIKGAAHFYKKRGKH--------IITVQTEHKSVLDSIRKLENDG 1506
T G++E+ L ++KR + + R + +
Sbjct: 116 AVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGPVQICWHKFARYWDVEL 175
Query: 1507 FRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP------ILEIGELCRS 1560
+ + ++ E +TI V G + L+ +
Sbjct: 176 REIPM--RPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTG 233
Query: 1561 KGVIFHCDAAQAVGKIDINIQNYK-------VDLMSFSAHKI-YGPKGIGALYIRR---- 1608
+ H DAA + V +S S HK P G G + R
Sbjct: 234 IDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEAL 293
Query: 1609 NPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIE-MKEELKRILFLQKRLYN 1667
GG + + Q++ F E + + L +
Sbjct: 294 PQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLAD 353
Query: 1668 GLMESIE-EIYINGDMNNRIPHNLNISFNFIEGESLLMAIKDIA---VSSGSACTSASLE 1723
+ + E G + IP + F +GE + D++ G
Sbjct: 354 EIAKLGPYEFICTGRPDEGIP---AVCFKLKDGEDPGYTLYDLSERLRLRGWQV------ 404
Query: 1724 PSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK 1763
P++ L + +R R + ++ K
Sbjct: 405 PAFTLGGEATD----IVVMRIMCRRGFEMDFAELLLEDYK 440
|
| >d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} Length = 377 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]
Score = 111 bits (278), Expect = 2e-26
Identities = 53/381 (13%), Positives = 114/381 (29%), Gaps = 52/381 (13%)
Query: 7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-DPREIIWTS 65
+ P V+ M N + H +++ ++ + + +P I +
Sbjct: 27 SNAHPSVLQAM---------NVSPVGH-LDPAFLALMDEIQSLLRYVWQTENPLTIAVSG 76
Query: 66 GATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLIT 125
T + I + G ++ + T KP
Sbjct: 77 TGTAAMEATIAN----AVEPGDVVLIGVAGYFGNRLVDMAGRYGADVRTISKPWGEVFSL 132
Query: 126 LSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQ 185
+++++ G QP+ +GELCR G + D ++G + I +
Sbjct: 133 EELRTALETHRPAILALVHAETSTGARQPLEGVGELCREFGTLLLVDTVTSLGGVPIFLD 192
Query: 186 NYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGL-----------RSG 234
+ VDL + K G + + + + + L
Sbjct: 193 AWGVDLAYSCSQKGLGCSPGASPFTMSSRAIEKLQRRRTKVANWYLDMNLLGKYWGSERV 252
Query: 235 TLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEI--YINGDMNNRIPH 292
T I R+ +E L ++ L E +E+I ++ + R+P
Sbjct: 253 YHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDIGLSLHVEKEYRLPT 312
Query: 293 NLNISF-NFIEGESLLMAIKD---IAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRF 348
+ + ++G+++ + + I V G LA R
Sbjct: 313 LTTVCIPDGVDGKAVARRLLNEHNIEVGGGLGE-------------------LAGKVWRV 353
Query: 349 -TIGRFTTEKEIDFTIKLLKM 368
+G + ++ +D I L+
Sbjct: 354 GLMGFNSRKESVDQLIPALEQ 374
|
| >d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} Length = 377 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]
Score = 111 bits (278), Expect = 2e-26
Identities = 53/381 (13%), Positives = 114/381 (29%), Gaps = 52/381 (13%)
Query: 1403 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-DPREIIWTS 1461
+ P V+ M N + H +++ ++ + + +P I +
Sbjct: 27 SNAHPSVLQAM---------NVSPVGH-LDPAFLALMDEIQSLLRYVWQTENPLTIAVSG 76
Query: 1462 GATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLIT 1521
T + I + G ++ + T KP
Sbjct: 77 TGTAAMEATIAN----AVEPGDVVLIGVAGYFGNRLVDMAGRYGADVRTISKPWGEVFSL 132
Query: 1522 LSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQ 1581
+++++ G QP+ +GELCR G + D ++G + I +
Sbjct: 133 EELRTALETHRPAILALVHAETSTGARQPLEGVGELCREFGTLLLVDTVTSLGGVPIFLD 192
Query: 1582 NYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGL-----------RSG 1630
+ VDL + K G + + + + + L
Sbjct: 193 AWGVDLAYSCSQKGLGCSPGASPFTMSSRAIEKLQRRRTKVANWYLDMNLLGKYWGSERV 252
Query: 1631 TLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEI--YINGDMNNRIPH 1688
T I R+ +E L ++ L E +E+I ++ + R+P
Sbjct: 253 YHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDIGLSLHVEKEYRLPT 312
Query: 1689 NLNISF-NFIEGESLLMAIKD---IAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRF 1744
+ + ++G+++ + + I V G LA R
Sbjct: 313 LTTVCIPDGVDGKAVARRLLNEHNIEVGGGLGE-------------------LAGKVWRV 353
Query: 1745 -TIGRFTTEKEIDFTIKLLKM 1764
+G + ++ +D I L+
Sbjct: 354 GLMGFNSRKESVDQLIPALEQ 374
|
| >d1mw7a_ e.39.1.1 (A:) Hypothetical protein HP0162 {Helicobacter pylori [TaxId: 210]} Length = 220 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: YebC-like superfamily: YebC-like family: YebC-like domain: Hypothetical protein HP0162 species: Helicobacter pylori [TaxId: 210]
Score = 105 bits (264), Expect = 6e-26
Identities = 59/199 (29%), Positives = 99/199 (49%), Gaps = 11/199 (5%)
Query: 1211 KICTRIMRELRVAI-NFGNNPDTNIKLRLAIEKALDANIPKNNIFRAIQKNNSNIKNENI 1269
K+ ++ + + +A + G+ PDTN KLR AI A N+PK+NI AI++ + ++
Sbjct: 1 KVFPKLAKAITLAAKDGGSEPDTNAKLRTAILNAKAQNMPKDNIDAAIKRAS----SKEG 56
Query: 1270 NYIEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNKN-GGNLSKEGSVLFMFKHCGQ 1328
N E+ YEG + G II++C+T+N RT++N+++ FNK G ++ GS+ FMF
Sbjct: 57 NLSEITYEGKANFGVLIIMECMTDNPTRTIANLKSYFNKTQGASIVPNGSLEFMFNRKSV 116
Query: 1329 LLFLPNTKKNTLLDL-ALEKGAEDFLIDK----DNKITIITSPSKFIEIKNSLEMTGFKA 1383
L N +N L L LE D+ +++ ++KI I + F + E
Sbjct: 117 FECLKNEVENLKLSLEDLEFALIDYGLEELEEVEDKIIIRGDYNSFKLLNEGFESLKLPI 176
Query: 1384 ESSGIVMRPYTNIVFKDAT 1402
+ + T I D
Sbjct: 177 LKASLQRIATTPIELNDEQ 195
|
| >d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 2-aminoethylphosphonate transaminase species: Salmonella typhimurium [TaxId: 90371]
Score = 107 bits (268), Expect = 3e-25
Identities = 43/381 (11%), Positives = 91/381 (23%), Gaps = 52/381 (13%)
Query: 7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE--IIWT 64
V + M+ +E+ R ++ L A ++
Sbjct: 9 LTTSRTVKEAMLFDSC----------TWDDDYNIGVVEQIRQQLTALATASEGYTSVLLQ 58
Query: 65 SGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLI 124
+ + + A K +I + + + + L +
Sbjct: 59 GSGSYAVEAVLGSALGPQD---KVLIVSNGAYGARMVEMAGLMGIAHHAYDCGEVARPDV 115
Query: 125 TLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINI 184
++++ G++ PI E+G L G + DA + G I ++I
Sbjct: 116 QAIDAILNADPTISHIAMVHSETTTGMLNPIDEVGALAHRYGKTYIVDAMSSFGGIPMDI 175
Query: 185 QNYKVDLMSFSAHKIY-GPKGIGALYIRRNPRTRIE-----------AQIHGGGHEYGLR 232
+D + SA+K G G + R + AQ +G
Sbjct: 176 AALHIDYLISSANKCIQGVPGFAFVIAREQKLAACKGHSRSLSLDLYAQWRCMEDNHGKW 235
Query: 233 SGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPH 292
T TH ++ +A + E + + Q + D P
Sbjct: 236 RFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRALGFNTLLDDELHSPI 295
Query: 293 NLNISFNFIEGESL-----LMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIR 347
+ + + G R
Sbjct: 296 ITAFYSPEDPQYRFSEFYRRLKEQGFVIYPGKVS--------------------QSDCFR 335
Query: 348 FTIGRFTTEKEIDFTIKLLKM 368
+I + ++
Sbjct: 336 IGNIGEVYAADITALLTAIRT 356
|
| >d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 2-aminoethylphosphonate transaminase species: Salmonella typhimurium [TaxId: 90371]
Score = 107 bits (268), Expect = 3e-25
Identities = 43/381 (11%), Positives = 91/381 (23%), Gaps = 52/381 (13%)
Query: 1403 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE--IIWT 1460
V + M+ +E+ R ++ L A ++
Sbjct: 9 LTTSRTVKEAMLFDSC----------TWDDDYNIGVVEQIRQQLTALATASEGYTSVLLQ 58
Query: 1461 SGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLI 1520
+ + + A K +I + + + + L +
Sbjct: 59 GSGSYAVEAVLGSALGPQD---KVLIVSNGAYGARMVEMAGLMGIAHHAYDCGEVARPDV 115
Query: 1521 TLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINI 1580
++++ G++ PI E+G L G + DA + G I ++I
Sbjct: 116 QAIDAILNADPTISHIAMVHSETTTGMLNPIDEVGALAHRYGKTYIVDAMSSFGGIPMDI 175
Query: 1581 QNYKVDLMSFSAHKIY-GPKGIGALYIRRNPRTRIE-----------AQIHGGGHEYGLR 1628
+D + SA+K G G + R + AQ +G
Sbjct: 176 AALHIDYLISSANKCIQGVPGFAFVIAREQKLAACKGHSRSLSLDLYAQWRCMEDNHGKW 235
Query: 1629 SGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPH 1688
T TH ++ +A + E + + Q + D P
Sbjct: 236 RFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRALGFNTLLDDELHSPI 295
Query: 1689 NLNISFNFIEGESL-----LMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIR 1743
+ + + G R
Sbjct: 296 ITAFYSPEDPQYRFSEFYRRLKEQGFVIYPGKVS--------------------QSDCFR 335
Query: 1744 FTIGRFTTEKEIDFTIKLLKM 1764
+I + ++
Sbjct: 336 IGNIGEVYAADITALLTAIRT 356
|
| >d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 108 bits (269), Expect = 3e-25
Identities = 40/384 (10%), Positives = 104/384 (27%), Gaps = 56/384 (14%)
Query: 7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-DPREIIWTS 65
+ + PR++ + +++ + + + +P ++ +
Sbjct: 28 SNLPPRIMAAG---------GLQMIGS-MSKDMYQIMDEIKEGIQYVFQTRNPLTLVISG 77
Query: 66 GATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLIT 125
+ A+ + G + K
Sbjct: 78 SGHCALEAAL----VNVLEPGDSFLVGANGIWGQRAVDIGERIGARVHPMTKDPGGHYTL 133
Query: 126 LSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQ 185
E +L+ + + GV+QP+ GELC + D+ ++G + +
Sbjct: 134 QEVEEGLAQHKPVLLFLTHGESSTGVLQPLDGFGELCHRYKCLLLVDSVASLGGTPLYMD 193
Query: 186 NYKVDLMSFSAHKIYGPKGIGALYIRRNPR-----------------TRIEAQIHGGGHE 228
+D++ + K +L + + A G +
Sbjct: 194 RQGIDILYSGSQKALNAPPGTSLISFSDKAKKKMYSRKTKPFSFYLDIKWLANFWGCDDQ 253
Query: 229 YGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNN 288
+ T+ + + E+ L + E R +G ++++ D
Sbjct: 254 PRMYHHTIPVISLYSLRESLALIAEQGLENSWRQHREAAAYLHGRLQALGLQLFVKDPAL 313
Query: 289 RIPHNLNISF-NFIEGESLLMAIKD---IAVSSGSACTSASLEPSYVLRALGCNDELAHS 344
R+P ++ + ++ + D I + G
Sbjct: 314 RLPTVTTVAVPAGYDWRDIVSYVIDHFDIEIMGGLGP-------------------STGK 354
Query: 345 SIRF-TIGRFTTEKEIDFTIKLLK 367
+R +G T + +D + L+
Sbjct: 355 VLRIGLLGCNATRENVDRVTEALR 378
|
| >d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 108 bits (269), Expect = 3e-25
Identities = 40/384 (10%), Positives = 104/384 (27%), Gaps = 56/384 (14%)
Query: 1403 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-DPREIIWTS 1461
+ + PR++ + +++ + + + +P ++ +
Sbjct: 28 SNLPPRIMAAG---------GLQMIGS-MSKDMYQIMDEIKEGIQYVFQTRNPLTLVISG 77
Query: 1462 GATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLIT 1521
+ A+ + G + K
Sbjct: 78 SGHCALEAAL----VNVLEPGDSFLVGANGIWGQRAVDIGERIGARVHPMTKDPGGHYTL 133
Query: 1522 LSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQ 1581
E +L+ + + GV+QP+ GELC + D+ ++G + +
Sbjct: 134 QEVEEGLAQHKPVLLFLTHGESSTGVLQPLDGFGELCHRYKCLLLVDSVASLGGTPLYMD 193
Query: 1582 NYKVDLMSFSAHKIYGPKGIGALYIRRNPR-----------------TRIEAQIHGGGHE 1624
+D++ + K +L + + A G +
Sbjct: 194 RQGIDILYSGSQKALNAPPGTSLISFSDKAKKKMYSRKTKPFSFYLDIKWLANFWGCDDQ 253
Query: 1625 YGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNN 1684
+ T+ + + E+ L + E R +G ++++ D
Sbjct: 254 PRMYHHTIPVISLYSLRESLALIAEQGLENSWRQHREAAAYLHGRLQALGLQLFVKDPAL 313
Query: 1685 RIPHNLNISF-NFIEGESLLMAIKD---IAVSSGSACTSASLEPSYVLRALGCNDELAHS 1740
R+P ++ + ++ + D I + G
Sbjct: 314 RLPTVTTVAVPAGYDWRDIVSYVIDHFDIEIMGGLGP-------------------STGK 354
Query: 1741 SIRF-TIGRFTTEKEIDFTIKLLK 1763
+R +G T + +D + L+
Sbjct: 355 VLRIGLLGCNATRENVDRVTEALR 378
|
| >d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} Length = 388 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 3-hydroxykynurenine transaminase species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]
Score = 105 bits (263), Expect = 2e-24
Identities = 41/385 (10%), Positives = 104/385 (27%), Gaps = 56/385 (14%)
Query: 7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSG 66
+ RV+ M + + + +++ ++ + + + R + SG
Sbjct: 26 SNCSKRVLTAMTNTV----------LSNFHAELFRTMDEVKDGLRYIFQTENRATMCVSG 75
Query: 67 -ATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLIT 125
A + + + + T P +
Sbjct: 76 SAHAGMEAMLSNLLEEGDRV----LIAVNGIWAERAVEMSERYGADVRTIEGPPDRPFSL 131
Query: 126 LSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQ 185
+ + + ++ G++QP+ +G++C + DA ++ + +
Sbjct: 132 ETLARAIELHQPKCLFLTHGDSSSGLLQPLEGVGQICHQHDCLLIVDAVASLCGVPFYMD 191
Query: 186 NYKVDLMSFSAHKIYGPKGIGALYIRRNPR-----------------TRIEAQIHGGGHE 228
+++D + A K+ G + G E
Sbjct: 192 KWEIDAVYTGAQKVLGAPPGITPISISPKALDVIRNRRTKSKVFYWDLLLLGNYWGCYDE 251
Query: 229 YGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNN 288
T+A++ I + EA E E + ++ + + D +
Sbjct: 252 PKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKMGLDIFVKDPRH 311
Query: 289 RIPHNLNISF-NFIEGESLLMAIKD---IAVSSGSACTSASLEPSYVLRALGCNDELAHS 344
R+P I ++ + + + V G
Sbjct: 312 RLPTVTGIMIPKGVDWWKVSQYAMNNFSLEVQGGLGP-------------------TFGK 352
Query: 345 SIRF-TIGRFTTEKEIDFTIKLLKM 368
+ R +G +T ++I F + K
Sbjct: 353 AWRVGIMGECSTVQKIQFYLYGFKE 377
|
| >d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} Length = 388 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 3-hydroxykynurenine transaminase species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]
Score = 105 bits (263), Expect = 2e-24
Identities = 41/385 (10%), Positives = 104/385 (27%), Gaps = 56/385 (14%)
Query: 1403 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSG 1462
+ RV+ M + + + +++ ++ + + + R + SG
Sbjct: 26 SNCSKRVLTAMTNTV----------LSNFHAELFRTMDEVKDGLRYIFQTENRATMCVSG 75
Query: 1463 -ATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLIT 1521
A + + + + T P +
Sbjct: 76 SAHAGMEAMLSNLLEEGDRV----LIAVNGIWAERAVEMSERYGADVRTIEGPPDRPFSL 131
Query: 1522 LSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQ 1581
+ + + ++ G++QP+ +G++C + DA ++ + +
Sbjct: 132 ETLARAIELHQPKCLFLTHGDSSSGLLQPLEGVGQICHQHDCLLIVDAVASLCGVPFYMD 191
Query: 1582 NYKVDLMSFSAHKIYGPKGIGALYIRRNPR-----------------TRIEAQIHGGGHE 1624
+++D + A K+ G + G E
Sbjct: 192 KWEIDAVYTGAQKVLGAPPGITPISISPKALDVIRNRRTKSKVFYWDLLLLGNYWGCYDE 251
Query: 1625 YGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNN 1684
T+A++ I + EA E E + ++ + + D +
Sbjct: 252 PKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKMGLDIFVKDPRH 311
Query: 1685 RIPHNLNISF-NFIEGESLLMAIKD---IAVSSGSACTSASLEPSYVLRALGCNDELAHS 1740
R+P I ++ + + + V G
Sbjct: 312 RLPTVTGIMIPKGVDWWKVSQYAMNNFSLEVQGGLGP-------------------TFGK 352
Query: 1741 SIRF-TIGRFTTEKEIDFTIKLLKM 1764
+ R +G +T ++I F + K
Sbjct: 353 AWRVGIMGECSTVQKIQFYLYGFKE 377
|
| >d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} Length = 381 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystine C-S lyase C-des species: Synechocystis sp. [TaxId: 1143]
Score = 104 bits (260), Expect = 4e-24
Identities = 54/397 (13%), Positives = 125/397 (31%), Gaps = 60/397 (15%)
Query: 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE 60
++ + ++ + N + ++ I + R +A+ DP
Sbjct: 11 FNFGGQGILPTVALEAITAMYGYLQENG-PFSIAANQHIQQLIAQLRQALAETFNVDPNT 69
Query: 61 IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDG---FRVTYLK 117
I T T ++ + +G I+ EH ++ ++ + +R +
Sbjct: 70 ITITDNVTTGCDIVLW---GLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVA 126
Query: 118 PKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGEL----CRSKGVIFHCDA 173
N + L + T LV + + G + P+ EI + + V D
Sbjct: 127 ATLNQGDAAAVLANHLGPKTRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDG 186
Query: 174 AQAVGKIDINIQNYKVDLMSFSAHKIYGP-KGIGALYIRRNPRTRIEAQIHGGG------ 226
AQ+ G + ++ +VD +F+ HK + G+G LYI + I G
Sbjct: 187 AQSAGSLPLDFSRLEVDYYAFTGHKWFAGPAGVGGLYIHGDCLGEINPTYVGWRSITYGA 246
Query: 227 -----------HEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLME 275
+ + + + + + +E + I + L+ G +
Sbjct: 247 KGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRG-LN 305
Query: 276 SIEEIYINGDMNNRIPHNLNISFNF---IEGESLLMAIKD--IAVSSGSACTSASLEPSY 330
+ ++ + +SF + +++ +++ I + + +
Sbjct: 306 QLPHVHCLATSAPQAG---LVSFTVDSPLGHRAIVQKLEEQRIYLRTIA----------- 351
Query: 331 VLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK 367
IR T E+EI+ + L
Sbjct: 352 -----------DPDCIRACCHYITDEEEINHLLARLA 377
|
| >d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} Length = 381 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystine C-S lyase C-des species: Synechocystis sp. [TaxId: 1143]
Score = 100 bits (248), Expect = 1e-22
Identities = 54/393 (13%), Positives = 123/393 (31%), Gaps = 60/393 (15%)
Query: 1401 ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWT 1460
+ ++ + N + ++ I + R +A+ DP I T
Sbjct: 15 GQGILPTVALEAITAMYGYLQENG-PFSIAANQHIQQLIAQLRQALAETFNVDPNTITIT 73
Query: 1461 SGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDG---FRVTYLKPKNN 1517
T ++ + +G I+ EH ++ ++ + +R + N
Sbjct: 74 DNVTTGCDIVLW---GLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLN 130
Query: 1518 GLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGEL----CRSKGVIFHCDAAQAV 1573
+ L + T LV + + G + P+ EI + + V D AQ+
Sbjct: 131 QGDAAAVLANHLGPKTRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSA 190
Query: 1574 GKIDINIQNYKVDLMSFSAHKIYGP-KGIGALYIRRNPRTRIEAQIHGGG---------- 1622
G + ++ +VD +F+ HK + G+G LYI + I G
Sbjct: 191 GSLPLDFSRLEVDYYAFTGHKWFAGPAGVGGLYIHGDCLGEINPTYVGWRSITYGAKGEP 250
Query: 1623 -------HEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEE 1675
+ + + + + + +E + I + L+ G + +
Sbjct: 251 TGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRG-LNQLPH 309
Query: 1676 IYINGDMNNRIPHNLNISFNF---IEGESLLMAIKD--IAVSSGSACTSASLEPSYVLRA 1730
++ + +SF + +++ +++ I + + +
Sbjct: 310 VHCLATSAPQAG---LVSFTVDSPLGHRAIVQKLEEQRIYLRTIA--------------- 351
Query: 1731 LGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK 1763
IR T E+EI+ + L
Sbjct: 352 -------DPDCIRACCHYITDEEEINHLLARLA 377
|
| >d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Length = 137 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Prokaryotic actin homolog MreB species: Thermotoga maritima [TaxId: 2336]
Score = 95.6 bits (237), Expect = 3e-23
Identities = 34/169 (20%), Positives = 55/169 (32%), Gaps = 38/169 (22%)
Query: 640 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPD-GKIYVGKKAKITQNIDPK 698
IGID GT N+LV + I PS++ G+I
Sbjct: 3 IGIDLGTANTLVFLRGKGIVVN---------EPSVIAIDSTTGEILKVGLEAKNMIGKTP 53
Query: 699 NTISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAE 758
TI +I+ + ++ + A+
Sbjct: 54 ATIKAIRPMRDGV----------------------------IADYTVALVMLRYFINKAK 85
Query: 759 NAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAI 807
+N VI VP D++R+ +A AG + + L+ EP +AAI
Sbjct: 86 GGMNLFKPRVVIGVPIGITDVERRAILDAGLEAGASKVFLIEEPMAAAI 134
|
| >d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Length = 137 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Prokaryotic actin homolog MreB species: Thermotoga maritima [TaxId: 2336]
Score = 95.6 bits (237), Expect = 3e-23
Identities = 34/169 (20%), Positives = 55/169 (32%), Gaps = 38/169 (22%)
Query: 2036 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPD-GKIYVGKKAKITQNIDPK 2094
IGID GT N+LV + I PS++ G+I
Sbjct: 3 IGIDLGTANTLVFLRGKGIVVN---------EPSVIAIDSTTGEILKVGLEAKNMIGKTP 53
Query: 2095 NTISSIKRFIARDLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAE 2154
TI +I+ + ++ + A+
Sbjct: 54 ATIKAIRPMRDGV----------------------------IADYTVALVMLRYFINKAK 85
Query: 2155 NAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVLRLLNEPTSAAI 2203
+N VI VP D++R+ +A AG + + L+ EP +AAI
Sbjct: 86 GGMNLFKPRVVIGVPIGITDVERRAILDAGLEAGASKVFLIEEPMAAAI 134
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} Length = 467 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Score = 103 bits (257), Expect = 4e-23
Identities = 55/429 (12%), Positives = 110/429 (25%), Gaps = 55/429 (12%)
Query: 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAE-------KAIEKARNEVAQLIYADPRE 60
P D I L +++ ++ V +
Sbjct: 34 PFLLDSEDVFIDLLTDSGTGAVTQSMQAAMMRGDEAFSGSRSYYALAESVKNIFGYQ--Y 91
Query: 61 IIWTSGATESNNLAIKGAAHFYKKRGK----------HIITVQTEHKSVLD--SIRKLEN 108
I T + + I ++ + T+ S ++ ++R +
Sbjct: 92 TIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTVRNVYI 151
Query: 109 DGFRVTYLKPKNNGLITLSQLEEKI----CSDTILVSVMLVNNEIGVIQPILE----IGE 160
T ++ G L LE I ++ + + +N G L +
Sbjct: 152 KEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYS 211
Query: 161 LCRSKGVIFHCDAAQAVGKIDINIQNYK-----------------VDLMSFSAHKIYGPK 203
+ + + D+A+ Q D+++ SA K
Sbjct: 212 IAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVP 271
Query: 204 GIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRIL 263
G L ++ + + + A L + L +
Sbjct: 272 MGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRI 331
Query: 264 FLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIKDIAVSSGSACTS 323
+ L +GL E G + + + ++ +G
Sbjct: 332 AQVQYLVDGLEEIGVVCQQAGGHAAFVDAGKLLPHIPADQFPAQALACELYKVAGIRAVE 391
Query: 324 ASLEPSYVLRALGCNDELAHSSIRFTIGRFT-TEKEIDFTIKLLK--------MKEFFMS 374
G +R TI R T T+ +DF I+ K +K +
Sbjct: 392 IGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKENAANIKGLTFT 451
Query: 375 YSEKVLDHY 383
Y KVL H+
Sbjct: 452 YEPKVLRHF 460
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} Length = 467 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Score = 103 bits (257), Expect = 4e-23
Identities = 55/429 (12%), Positives = 110/429 (25%), Gaps = 55/429 (12%)
Query: 1404 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAE-------KAIEKARNEVAQLIYADPRE 1456
P D I L +++ ++ V +
Sbjct: 34 PFLLDSEDVFIDLLTDSGTGAVTQSMQAAMMRGDEAFSGSRSYYALAESVKNIFGYQ--Y 91
Query: 1457 IIWTSGATESNNLAIKGAAHFYKKRGK----------HIITVQTEHKSVLD--SIRKLEN 1504
I T + + I ++ + T+ S ++ ++R +
Sbjct: 92 TIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTVRNVYI 151
Query: 1505 DGFRVTYLKPKNNGLITLSQLEEKI----CSDTILVSVMLVNNEIGVIQPILE----IGE 1556
T ++ G L LE I ++ + + +N G L +
Sbjct: 152 KEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYS 211
Query: 1557 LCRSKGVIFHCDAAQAVGKIDINIQNYK-----------------VDLMSFSAHKIYGPK 1599
+ + + D+A+ Q D+++ SA K
Sbjct: 212 IAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVP 271
Query: 1600 GIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRIL 1659
G L ++ + + + A L + L +
Sbjct: 272 MGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRI 331
Query: 1660 FLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIKDIAVSSGSACTS 1719
+ L +GL E G + + + ++ +G
Sbjct: 332 AQVQYLVDGLEEIGVVCQQAGGHAAFVDAGKLLPHIPADQFPAQALACELYKVAGIRAVE 391
Query: 1720 ASLEPSYVLRALGCNDELAHSSIRFTIGRFT-TEKEIDFTIKLLK--------MKEFFMS 1770
G +R TI R T T+ +DF I+ K +K +
Sbjct: 392 IGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKENAANIKGLTFT 451
Query: 1771 YSEKVLDHY 1779
Y KVL H+
Sbjct: 452 YEPKVLRHF 460
|
| >d1xjsa_ d.224.1.2 (A:) NifU {Bacillus subtilis [TaxId: 1423]} Length = 147 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: SufE/NifU superfamily: SufE/NifU family: NifU/IscU domain domain: NifU species: Bacillus subtilis [TaxId: 1423]
Score = 90.4 bits (224), Expect = 2e-21
Identities = 36/120 (30%), Positives = 67/120 (55%), Gaps = 15/120 (12%)
Query: 375 YSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKTYG 434
Y + ++DHY+NPRN GV + + P CGD ++L +K++ ++ DAKF+ G
Sbjct: 11 YRQVIMDHYKNPRNKGVLNDSI----VVDMNNPTCGDRIRLTMKLD-GDIVEDAKFEGEG 65
Query: 435 CGSAIASSSLVTEWVKGKTLDEA----------MSIKNTDIAEELVTKKAAKYINKYIQK 484
C ++AS+S++T+ +KGK ++ A M K D + +L +A + ++K+ +
Sbjct: 66 CSISMASASMMTQAIKGKDIETALSMSKIFSDMMQGKEYDDSIDLGDIEALQGVSKFPAR 125
|
| >d1xjsa_ d.224.1.2 (A:) NifU {Bacillus subtilis [TaxId: 1423]} Length = 147 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: SufE/NifU superfamily: SufE/NifU family: NifU/IscU domain domain: NifU species: Bacillus subtilis [TaxId: 1423]
Score = 90.4 bits (224), Expect = 2e-21
Identities = 36/120 (30%), Positives = 67/120 (55%), Gaps = 15/120 (12%)
Query: 1771 YSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKTYG 1830
Y + ++DHY+NPRN GV + + P CGD ++L +K++ ++ DAKF+ G
Sbjct: 11 YRQVIMDHYKNPRNKGVLNDSI----VVDMNNPTCGDRIRLTMKLD-GDIVEDAKFEGEG 65
Query: 1831 CGSAIASSSLVTEWVKGKTLDEA----------MSIKNTDIAEELVTKKAAKYINKYIQK 1880
C ++AS+S++T+ +KGK ++ A M K D + +L +A + ++K+ +
Sbjct: 66 CSISMASASMMTQAIKGKDIETALSMSKIFSDMMQGKEYDDSIDLGDIEALQGVSKFPAR 125
|
| >d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} Length = 345 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Phenylserine aldolase PSALD species: Pseudomonas putida [TaxId: 303]
Score = 96.1 bits (237), Expect = 3e-21
Identities = 36/375 (9%), Positives = 91/375 (24%), Gaps = 53/375 (14%)
Query: 1400 DATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIW 1459
D P V ++ S + ++ + + + ++ D E+
Sbjct: 10 DNIAGASPEVAQALVK---------HSSGQAGPYGTDELTAQVKRKFCEIFERD-VEVFL 59
Query: 1460 TSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGL 1519
T +N L + +I H + +
Sbjct: 60 VPTGTAANALCLSAMTP----PWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGPAAK 115
Query: 1520 ITL----------SQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDA 1569
+ + + ++ I + I IG++C+S + H D
Sbjct: 116 LDIVRLRERTREKVGDVHTTQPACVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDG 175
Query: 1570 AQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRS 1629
++ + + + + + +
Sbjct: 176 SRFANALVSLGCSPAEMTWKAGVDALSFGATKNGVLAAEAIVLFNTSLATEMSYRRKRAG 235
Query: 1630 GTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHN 1689
+ + + L ++ +RL GL + + + G
Sbjct: 236 HLSSKMRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEG-LGGVEVLG------GTE 288
Query: 1690 LNISFNFIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCN-DELAHSSIRFTIGR 1748
NI F +++ A+ G D + +RF
Sbjct: 289 ANILF-CRLDSAMIDALLK--------------------AGFGFYHDRWGPNVVRFVTSF 327
Query: 1749 FTTEKEIDFTIKLLK 1763
TT +++D + ++
Sbjct: 328 ATTAEDVDHLLNQVR 342
|
| >d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} Length = 345 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Phenylserine aldolase PSALD species: Pseudomonas putida [TaxId: 303]
Score = 94.5 bits (233), Expect = 8e-21
Identities = 35/373 (9%), Positives = 90/373 (24%), Gaps = 53/373 (14%)
Query: 6 TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTS 65
P V ++ S + ++ + + + ++ D E+
Sbjct: 12 IAGASPEVAQALVK---------HSSGQAGPYGTDELTAQVKRKFCEIFERD-VEVFLVP 61
Query: 66 GATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLIT 125
T +N L + +I H + + +
Sbjct: 62 TGTAANALCLSAMTP----PWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGPAAKLD 117
Query: 126 L----------SQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQ 175
+ + ++ I + I IG++C+S + H D ++
Sbjct: 118 IVRLRERTREKVGDVHTTQPACVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSR 177
Query: 176 AVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGT 235
+ + + + + +
Sbjct: 178 FANALVSLGCSPAEMTWKAGVDALSFGATKNGVLAAEAIVLFNTSLATEMSYRRKRAGHL 237
Query: 236 LATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLN 295
+ + + L ++ +RL GL + + + G N
Sbjct: 238 SSKMRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEG-LGGVEVLG------GTEAN 290
Query: 296 ISFNFIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCN-DELAHSSIRFTIGRFT 354
I F +++ A+ G D + +RF T
Sbjct: 291 ILF-CRLDSAMIDALLK--------------------AGFGFYHDRWGPNVVRFVTSFAT 329
Query: 355 TEKEIDFTIKLLK 367
T +++D + ++
Sbjct: 330 TAEDVDHLLNQVR 342
|
| >d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Length = 196 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Prokaryotic actin homolog MreB species: Thermotoga maritima [TaxId: 2336]
Score = 88.8 bits (219), Expect = 3e-20
Identities = 29/187 (15%), Positives = 66/187 (35%), Gaps = 7/187 (3%)
Query: 821 AVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLSYKDV 880
V D+GGGT +++++ + V + Y ++ V K
Sbjct: 10 MVVDIGGGTTEVAVISLGSIVTWESIRIAGDEMDEAIVQYVRETYRVAIGERTAERVKIE 69
Query: 881 NILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNRTILLSSKAL 940
+ S+E EL + S + L S +T+ + + +V + L
Sbjct: 70 IGNVFPSKENDELETTVSGIDL----STGLPRKLTLKGGEVREALRSVVVAIVESVRTTL 125
Query: 941 MDANLTIK---DINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANF 997
+ + L GG + ++ + + +++ S +P AV GA + +
Sbjct: 126 EKTPPELVSDIIERGIFLTGGGSLLRGLDTLLQKETGISVIRSEEPLTAVAKGAGMVLDK 185
Query: 998 LSGNRGI 1004
++ + +
Sbjct: 186 VNILKKL 192
|
| >d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Length = 196 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Prokaryotic actin homolog MreB species: Thermotoga maritima [TaxId: 2336]
Score = 88.8 bits (219), Expect = 3e-20
Identities = 29/187 (15%), Positives = 66/187 (35%), Gaps = 7/187 (3%)
Query: 2217 AVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLSYKDV 2276
V D+GGGT +++++ + V + Y ++ V K
Sbjct: 10 MVVDIGGGTTEVAVISLGSIVTWESIRIAGDEMDEAIVQYVRETYRVAIGERTAERVKIE 69
Query: 2277 NILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNRTILLSSKAL 2336
+ S+E EL + S + L S +T+ + + +V + L
Sbjct: 70 IGNVFPSKENDELETTVSGIDL----STGLPRKLTLKGGEVREALRSVVVAIVESVRTTL 125
Query: 2337 MDANLTIK---DINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANF 2393
+ + L GG + ++ + + +++ S +P AV GA + +
Sbjct: 126 EKTPPELVSDIIERGIFLTGGGSLLRGLDTLLQKETGISVIRSEEPLTAVAKGAGMVLDK 185
Query: 2394 LSGNRGI 2400
++ + +
Sbjct: 186 VNILKKL 192
|
| >d1i7ha_ d.15.4.1 (A:) Adrenodoxin-like ferredoxin {Escherichia coli [TaxId: 562]} Length = 109 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: 2Fe-2S ferredoxin-like family: 2Fe-2S ferredoxin-related domain: Adrenodoxin-like ferredoxin species: Escherichia coli [TaxId: 562]
Score = 82.7 bits (204), Expect = 4e-19
Identities = 50/89 (56%), Positives = 64/89 (71%), Gaps = 4/89 (4%)
Query: 2514 ITIKPFYNMNLDEIKNGAIFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGF 2573
I I P + D +GA+ NSG ++ DA L+N I IEHACEKSCAC TCH I+REGF
Sbjct: 3 IVILP----HQDLCPDGAVLEANSGETILDAALRNGIEIEHACEKSCACTTCHCIVREGF 58
Query: 2574 NEINKANEVEEDMLNKAWGLEENSRLSCQ 2602
+ + +++E E+DML+KAWGLE SRLSCQ
Sbjct: 59 DSLPESSEQEDDMLDKAWGLEPESRLSCQ 87
|
| >d1i7ha_ d.15.4.1 (A:) Adrenodoxin-like ferredoxin {Escherichia coli [TaxId: 562]} Length = 109 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: 2Fe-2S ferredoxin-like family: 2Fe-2S ferredoxin-related domain: Adrenodoxin-like ferredoxin species: Escherichia coli [TaxId: 562]
Score = 75.0 bits (184), Expect = 2e-16
Identities = 49/91 (53%), Positives = 64/91 (70%), Gaps = 4/91 (4%)
Query: 1118 ITIKPFYNMNLDEIKNGAIFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGF 1177
I I P + D +GA+ NSG ++ DA L+N I IEHACEKSCAC TCH I+REGF
Sbjct: 3 IVILP----HQDLCPDGAVLEANSGETILDAALRNGIEIEHACEKSCACTTCHCIVREGF 58
Query: 1178 NEINKANEVEEDMLNKAWGLEENSRLSFDAK 1208
+ + +++E E+DML+KAWGLE SRLS A+
Sbjct: 59 DSLPESSEQEDDMLDKAWGLEPESRLSCQAR 89
|
| >d1su0b_ d.224.1.2 (B:) IscU homolog SPy0289 {Streptococcus pyogenes [TaxId: 1314]} Length = 136 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: SufE/NifU superfamily: SufE/NifU family: NifU/IscU domain domain: IscU homolog SPy0289 species: Streptococcus pyogenes [TaxId: 1314]
Score = 83.5 bits (206), Expect = 5e-19
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 5/92 (5%)
Query: 375 YSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKTYG 434
Y V DH + P + G + + + P CGDV+ L +K + I D F G
Sbjct: 5 YMAVVADHSKRPHHHGQLDGVE----AVQLNNPTCGDVISLTVKFD-EDKIEDIAFAGNG 59
Query: 435 CGSAIASSSLVTEWVKGKTLDEAMSIKNTDIA 466
C + ASSS++T+ V GK+ +EA+++ +
Sbjct: 60 CTISTASSSMMTDAVIGKSKEEALALADIFSE 91
|
| >d1su0b_ d.224.1.2 (B:) IscU homolog SPy0289 {Streptococcus pyogenes [TaxId: 1314]} Length = 136 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: SufE/NifU superfamily: SufE/NifU family: NifU/IscU domain domain: IscU homolog SPy0289 species: Streptococcus pyogenes [TaxId: 1314]
Score = 83.5 bits (206), Expect = 5e-19
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 5/92 (5%)
Query: 1771 YSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKTYG 1830
Y V DH + P + G + + + P CGDV+ L +K + I D F G
Sbjct: 5 YMAVVADHSKRPHHHGQLDGVE----AVQLNNPTCGDVISLTVKFD-EDKIEDIAFAGNG 59
Query: 1831 CGSAIASSSLVTEWVKGKTLDEAMSIKNTDIA 1862
C + ASSS++T+ V GK+ +EA+++ +
Sbjct: 60 CTISTASSSMMTDAVIGKSKEEALALADIFSE 91
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} Length = 445 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 87.3 bits (215), Expect = 5e-18
Identities = 38/326 (11%), Positives = 88/326 (26%), Gaps = 32/326 (9%)
Query: 64 TSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGL 123
AT + + + K+II + + KS S+ + + + +
Sbjct: 118 VPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGFEPVVIENVLEGDELR 177
Query: 124 ITLSQLEEKICSDT----ILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVG- 178
L +E KI + + V + E+ +C + + + A +
Sbjct: 178 TDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQS 237
Query: 179 -----KIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIR-RNPRTRIEAQIHGGGHEYGL 231
I + ++D S K P G + I G
Sbjct: 238 SKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKMYPGRAS---- 293
Query: 232 RSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIY---INGDMNN 288
+ + +L + + ++ + E + + +N
Sbjct: 294 ------ASPSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHN 347
Query: 289 RIPHNLNI----SFNFIEGESLLMAIKDIAVSSGSACTSASLEP--SYVLRALGCN-DEL 341
I + + + L + VS A +++ + R + D
Sbjct: 348 PISLAMTLKTIDGHHDKAVTQLGSMLFTRQVSGARAVPLGNVQTVSGHTFRGFMSHADNY 407
Query: 342 AHSSIRFTIGRFTTEKEIDFTIKLLK 367
+ + +++D IK L
Sbjct: 408 PCAYLNAAAAIGMKMQDVDLFIKRLD 433
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} Length = 445 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 87.3 bits (215), Expect = 5e-18
Identities = 38/326 (11%), Positives = 88/326 (26%), Gaps = 32/326 (9%)
Query: 1460 TSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGL 1519
AT + + + K+II + + KS S+ + + + +
Sbjct: 118 VPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGFEPVVIENVLEGDELR 177
Query: 1520 ITLSQLEEKICSDT----ILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVG- 1574
L +E KI + + V + E+ +C + + + A +
Sbjct: 178 TDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQS 237
Query: 1575 -----KIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIR-RNPRTRIEAQIHGGGHEYGL 1627
I + ++D S K P G + I G
Sbjct: 238 SKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKMYPGRAS---- 293
Query: 1628 RSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIY---INGDMNN 1684
+ + +L + + ++ + E + + +N
Sbjct: 294 ------ASPSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHN 347
Query: 1685 RIPHNLNI----SFNFIEGESLLMAIKDIAVSSGSACTSASLEP--SYVLRALGCN-DEL 1737
I + + + L + VS A +++ + R + D
Sbjct: 348 PISLAMTLKTIDGHHDKAVTQLGSMLFTRQVSGARAVPLGNVQTVSGHTFRGFMSHADNY 407
Query: 1738 AHSSIRFTIGRFTTEKEIDFTIKLLK 1763
+ + +++D IK L
Sbjct: 408 PCAYLNAAAAIGMKMQDVDLFIKRLD 433
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 364 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 84.9 bits (208), Expect = 2e-17
Identities = 48/388 (12%), Positives = 118/388 (30%), Gaps = 39/388 (10%)
Query: 1393 YTNIVFKDATTPIDPRVVDKMIPYLRVQFGNPASRN----HIYGWTAEKAIEKARNEVAQ 1448
+ NI + ++ + G + + N++ +
Sbjct: 2 FINIDPLQTGGKLTEEARQALLEWG---DGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPK 58
Query: 1449 LIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFR 1508
+ D T+GA E+ + A K+ ++ + H S +
Sbjct: 59 FLGCD--VARVTNGAREAKFAVMHSLA----KKDAWVVMDENCHYSS-YVAAERAGLNIA 111
Query: 1509 VTYLKPKNNGLITLSQLEE-----KICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGV 1563
+ + IT + K + +L + + G + + +I ++C V
Sbjct: 112 LVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDV 171
Query: 1564 IFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKG-IGALYIRRN-PRTRIEAQIHGG 1621
+ A A+G++ ++++ D + S HK G IG + ++ +
Sbjct: 172 PLLVNGAYAIGRMPVSLKEIGADFIVGSGHKSMAASGPIGVMGMKEEWAEIVLRRSEKYK 231
Query: 1622 GHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGD 1681
E L T I+ + +F E + + +R + + +
Sbjct: 232 NKEVELLGCTARGATIITLMASFP-HVRERIKRWDEEVEKARRFAAEMEK------LGIK 284
Query: 1682 MNNRIPHNLNISFNFIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSS 1741
PHN ++ F E + G L+ + + +
Sbjct: 285 QLGDNPHNHDLMFFHAEVLYEI----SKKAKGGRFFLYRELKSRKIHGI-----KPGLTR 335
Query: 1742 IRFTIGRFTTEKEIDFTIKLLK--MKEF 1767
+++E+D+ + K ++++
Sbjct: 336 YFKLSTYGLSDEEVDYVLNAFKEIIEKY 363
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 364 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 82.9 bits (203), Expect = 6e-17
Identities = 45/352 (12%), Positives = 111/352 (31%), Gaps = 32/352 (9%)
Query: 29 ASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKH 88
+ + + N++ + + D T+GA E+ + A K+
Sbjct: 35 CTTGRLDEIKTPPIHDFIHNQLPKFLGCD--VARVTNGAREAKFAVMHSLA----KKDAW 88
Query: 89 IITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEE-----KICSDTILVSVM 143
++ + H S + + + IT + K + +L +
Sbjct: 89 VVMDENCHYSS-YVAAERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALIT 147
Query: 144 LVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPK 203
+ G + + +I ++C V + A A+G++ ++++ D + S HK
Sbjct: 148 YPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMPVSLKEIGADFIVGSGHKSMAAS 207
Query: 204 G-IGALYIRRN-PRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKR 261
G IG + ++ + E L T I+ + +F E +
Sbjct: 208 GPIGVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFP-HVRERIKRWDE 266
Query: 262 ILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIKDIAVSSGSAC 321
+ +R + + + PHN ++ F E + G
Sbjct: 267 EVEKARRFAAEMEK------LGIKQLGDNPHNHDLMFFHAEVLYEI----SKKAKGGRFF 316
Query: 322 TSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK--MKEF 371
L+ + + + +++E+D+ + K ++++
Sbjct: 317 LYRELKSRKIHGI-----KPGLTRYFKLSTYGLSDEEVDYVLNAFKEIIEKY 363
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} Length = 434 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Score = 82.7 bits (203), Expect = 1e-16
Identities = 47/315 (14%), Positives = 98/315 (31%), Gaps = 28/315 (8%)
Query: 64 TSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGL 123
T +T + AA +I HKS + ++ + + V + +
Sbjct: 135 TPISTGMSISLCLSAARKKYGS-NVVIYPYASHKSPIKAVSFVGMNMRLVETVLDGDRVY 193
Query: 124 ITLSQLEEKICSD-----TILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAV- 177
+ + +E I + V L I+EI ++C + + + A A+
Sbjct: 194 VPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQ 253
Query: 178 ----GKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLR 232
+ Y+VD + S+ K + P G G +Y + + + G
Sbjct: 254 NNYYLEKLKKAFKYRVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEISLSYPGRASATPV 313
Query: 233 SGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPH 292
TL + +G E +K +K L L + + + ++ P
Sbjct: 314 VNTLVSLLSMG--------SKNYLELVKNQKNSKKLLDELLND-LSKKTGGKFLDVESPI 364
Query: 293 NLNISFNFIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGR 352
IS N + + + ++ V +G + H I
Sbjct: 365 ASCISVN-SDPVEIAAKLYNLRV-TGPRGIKKTDHFGNCYLGTY-----THDYIVMNAAI 417
Query: 353 FTTEKEIDFTIKLLK 367
++I ++ L+
Sbjct: 418 GVRTEDIVNSVSKLE 432
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} Length = 434 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Score = 82.7 bits (203), Expect = 1e-16
Identities = 47/315 (14%), Positives = 98/315 (31%), Gaps = 28/315 (8%)
Query: 1460 TSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGL 1519
T +T + AA +I HKS + ++ + + V + +
Sbjct: 135 TPISTGMSISLCLSAARKKYGS-NVVIYPYASHKSPIKAVSFVGMNMRLVETVLDGDRVY 193
Query: 1520 ITLSQLEEKICSD-----TILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAV- 1573
+ + +E I + V L I+EI ++C + + + A A+
Sbjct: 194 VPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQ 253
Query: 1574 ----GKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLR 1628
+ Y+VD + S+ K + P G G +Y + + + G
Sbjct: 254 NNYYLEKLKKAFKYRVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEISLSYPGRASATPV 313
Query: 1629 SGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPH 1688
TL + +G E +K +K L L + + + ++ P
Sbjct: 314 VNTLVSLLSMG--------SKNYLELVKNQKNSKKLLDELLND-LSKKTGGKFLDVESPI 364
Query: 1689 NLNISFNFIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGR 1748
IS N + + + ++ V +G + H I
Sbjct: 365 ASCISVN-SDPVEIAAKLYNLRV-TGPRGIKKTDHFGNCYLGTY-----THDYIVMNAAI 417
Query: 1749 FTTEKEIDFTIKLLK 1763
++I ++ L+
Sbjct: 418 GVRTEDIVNSVSKLE 432
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} Length = 456 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Score = 81.8 bits (201), Expect = 3e-16
Identities = 56/367 (15%), Positives = 109/367 (29%), Gaps = 54/367 (14%)
Query: 61 IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLD------SIRKLENDGFRVT 114
I+ T + NL K G+++ + + + D
Sbjct: 93 IVPTHQGRGAENLLS----QLAIKPGQYVAGNMYFTTTRFHQEKNGATFVDIVRDEAHDA 148
Query: 115 YLKPKNNGLITLSQLEEKI----CSDTILVSVMLVNNEIGVIQPILE----IGELCRSKG 166
L G I L++L I + + + + N G + + E+ + G
Sbjct: 149 SLNLPFKGDIDLNKLATLIKEKGAENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYG 208
Query: 167 VIFHCDAAQAVG---KIDINIQNYK--------------VDLMSFSAHKIYGPKGIGALY 209
+ DA + V I Y+ D + S K G L
Sbjct: 209 IKIFYDATRCVENAYFIKEQEAGYENVSIKDIVHEMFSYADGCTMSGKKDCLVNIGGFLC 268
Query: 210 IRRN---PRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIE-MKEELKRILFL 265
+ + ++ G YG +G +G+ EA + IE ++++ +
Sbjct: 269 MNDEEMFSAAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQYEYIEHRVKQVRYLGDK 328
Query: 266 QKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIKDIAVSSGSACTSAS 325
+ ++E + D PH F +SL + I + +G
Sbjct: 329 LREAGVPIVEPTGGHAVFLDARRFCPHLTQDQFP---AQSLAAS---IYMETGVRSMERG 382
Query: 326 LEPSYVLRALGCNDELAHSSIRFTIGRFT-TEKEIDFTIKLLK--------MKEFFMSYS 376
+ + + G N ++R TI R T +D + ++ Y
Sbjct: 383 IVSAGRSKETGENHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQHKEDIRGLTFVYE 442
Query: 377 EKVLDHY 383
K L +
Sbjct: 443 PKQLRFF 449
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} Length = 456 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Score = 81.8 bits (201), Expect = 3e-16
Identities = 56/367 (15%), Positives = 109/367 (29%), Gaps = 54/367 (14%)
Query: 1457 IIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLD------SIRKLENDGFRVT 1510
I+ T + NL K G+++ + + + D
Sbjct: 93 IVPTHQGRGAENLLS----QLAIKPGQYVAGNMYFTTTRFHQEKNGATFVDIVRDEAHDA 148
Query: 1511 YLKPKNNGLITLSQLEEKI----CSDTILVSVMLVNNEIGVIQPILE----IGELCRSKG 1562
L G I L++L I + + + + N G + + E+ + G
Sbjct: 149 SLNLPFKGDIDLNKLATLIKEKGAENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYG 208
Query: 1563 VIFHCDAAQAVG---KIDINIQNYK--------------VDLMSFSAHKIYGPKGIGALY 1605
+ DA + V I Y+ D + S K G L
Sbjct: 209 IKIFYDATRCVENAYFIKEQEAGYENVSIKDIVHEMFSYADGCTMSGKKDCLVNIGGFLC 268
Query: 1606 IRRN---PRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIE-MKEELKRILFL 1661
+ + ++ G YG +G +G+ EA + IE ++++ +
Sbjct: 269 MNDEEMFSAAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQYEYIEHRVKQVRYLGDK 328
Query: 1662 QKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIKDIAVSSGSACTSAS 1721
+ ++E + D PH F +SL + I + +G
Sbjct: 329 LREAGVPIVEPTGGHAVFLDARRFCPHLTQDQFP---AQSLAAS---IYMETGVRSMERG 382
Query: 1722 LEPSYVLRALGCNDELAHSSIRFTIGRFT-TEKEIDFTIKLLK--------MKEFFMSYS 1772
+ + + G N ++R TI R T +D + ++ Y
Sbjct: 383 IVSAGRSKETGENHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQHKEDIRGLTFVYE 442
Query: 1773 EKVLDHY 1779
K L +
Sbjct: 443 PKQLRFF 449
|
| >d1l5pa_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Trichomonas vaginalis [TaxId: 5722]} Length = 93 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: 2Fe-2S ferredoxin-like family: 2Fe-2S ferredoxin-related domain: 2Fe-2S ferredoxin species: Trichomonas vaginalis [TaxId: 5722]
Score = 72.7 bits (178), Expect = 8e-16
Identities = 16/79 (20%), Positives = 28/79 (35%), Gaps = 8/79 (10%)
Query: 2527 IKNGAI--FNENSGISLCDALLKNSIF-IEHACEKSCACATCHVIIREGFNEINKANEVE 2583
+K G +L L + + + C+ + AC C G A + E
Sbjct: 6 VKGGVKKQLKFEDDQTLFTVLTEAGLMSADDTCQGNKACGKCICKHVSGKV--AAAEDDE 63
Query: 2584 EDMLNKAWGLEENSRLSCQ 2602
++ L N+RL+C
Sbjct: 64 KEFL---EDQPANARLACA 79
|
| >d1l5pa_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Trichomonas vaginalis [TaxId: 5722]} Length = 93 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: 2Fe-2S ferredoxin-like family: 2Fe-2S ferredoxin-related domain: 2Fe-2S ferredoxin species: Trichomonas vaginalis [TaxId: 5722]
Score = 67.0 bits (163), Expect = 1e-13
Identities = 15/81 (18%), Positives = 27/81 (33%), Gaps = 8/81 (9%)
Query: 1131 IKNGAI--FNENSGISLCDALLKNSIF-IEHACEKSCACATCHVIIREGFNEINKANEVE 1187
+K G +L L + + + C+ + AC C G A + E
Sbjct: 6 VKGGVKKQLKFEDDQTLFTVLTEAGLMSADDTCQGNKACGKCICKHVSGKV--AAAEDDE 63
Query: 1188 EDMLNKAWGLEENSRLSFDAK 1208
++ L N+RL+
Sbjct: 64 KEFL---EDQPANARLACAIT 81
|
| >d2bt6a1 d.15.4.1 (A:5-108) Adrenodoxin {Cow (Bos taurus) [TaxId: 9913]} Length = 104 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: 2Fe-2S ferredoxin-like family: 2Fe-2S ferredoxin-related domain: Adrenodoxin species: Cow (Bos taurus) [TaxId: 9913]
Score = 70.8 bits (173), Expect = 6e-15
Identities = 28/70 (40%), Positives = 44/70 (62%), Gaps = 3/70 (4%)
Query: 2536 NSGISLCDALLKNSIFIE--HACEKSCACATCHVIIREG-FNEINKANEVEEDMLNKAWG 2592
G SL D +++N++ I+ ACE + AC+TCH+I + F ++ + E DML+ A+G
Sbjct: 20 KIGDSLLDVVVQNNLDIDGFGACEGTLACSTCHLIFEQHIFEKLEAITDEENDMLDLAYG 79
Query: 2593 LEENSRLSCQ 2602
L + SRL CQ
Sbjct: 80 LTDRSRLGCQ 89
|
| >d2bt6a1 d.15.4.1 (A:5-108) Adrenodoxin {Cow (Bos taurus) [TaxId: 9913]} Length = 104 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: 2Fe-2S ferredoxin-like family: 2Fe-2S ferredoxin-related domain: Adrenodoxin species: Cow (Bos taurus) [TaxId: 9913]
Score = 63.1 bits (153), Expect = 3e-12
Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 3/68 (4%)
Query: 1140 NSGISLCDALLKNSIFIE--HACEKSCACATCHVIIREG-FNEINKANEVEEDMLNKAWG 1196
G SL D +++N++ I+ ACE + AC+TCH+I + F ++ + E DML+ A+G
Sbjct: 20 KIGDSLLDVVVQNNLDIDGFGACEGTLACSTCHLIFEQHIFEKLEAITDEENDMLDLAYG 79
Query: 1197 LEENSRLS 1204
L + SRL
Sbjct: 80 LTDRSRLG 87
|
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} Length = 476 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Score = 77.6 bits (190), Expect = 8e-15
Identities = 51/437 (11%), Positives = 113/437 (25%), Gaps = 86/437 (19%)
Query: 1389 VMRPYTNIVFKDATTPIDPRVVDKMIP---------YLRVQFGNPASRNHIYGWTAEKAI 1439
+++ I+ T P + + +
Sbjct: 56 ILQDVEKIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELE 115
Query: 1440 EKARNEVAQLIYADPREI---------IWTSGATESNNLAIKGAAHFYKKRGKH------ 1484
+ + +++ + + A+E+ +A+ A +R +
Sbjct: 116 TVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLT 175
Query: 1485 ---------IITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDT-- 1533
H SV + G ++ + + S L+E + D
Sbjct: 176 QGAVLEKLVAYASDQAHSSVERAGL---IGGVKLKAIPSDGKFAMRASALQEALERDKAA 232
Query: 1534 ----ILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYK----- 1584
V L +LE+G +C + + H DAA A +
Sbjct: 233 GLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVE 292
Query: 1585 -VDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSG----TLATHQIVG 1639
D +F+ HK + + A + G T H +
Sbjct: 293 FADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLP 352
Query: 1640 MGEAFRLARIEM----------KEELKRILFLQKRLYNGLMESIE-EIYINGDMNNRIPH 1688
+G FR ++ + +++ + L +++ E+ +
Sbjct: 353 LGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLG----- 407
Query: 1689 NLNISFNFIEGESLLMAIKDIAVSSGSA-CTSASLEPSYVLRALGCNDELAHSSIRFTIG 1747
+ F + L A+ + S+ L +VL RF I
Sbjct: 408 --LVCFRLKGSDGLNEALLERINSARKIHLVPCRLRGQFVL--------------RFAIC 451
Query: 1748 -RFTTEKEIDFTIKLLK 1763
R + + ++
Sbjct: 452 SRKVESGHVRLAWEHIR 468
|
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} Length = 476 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Score = 76.0 bits (186), Expect = 3e-14
Identities = 49/404 (12%), Positives = 108/404 (26%), Gaps = 77/404 (19%)
Query: 17 MIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREI---------IWTSGA 67
M+ + + + + + +++ + + A
Sbjct: 89 MLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSA 148
Query: 68 TESNNLAIKGAAHFYKKRGKH---------------IITVQTEHKSVLDSIRKLENDGFR 112
+E+ +A+ A +R + H SV + G +
Sbjct: 149 SEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGL---IGGVK 205
Query: 113 VTYLKPKNNGLITLSQLEEKICSDT------ILVSVMLVNNEIGVIQPILEIGELCRSKG 166
+ + + S L+E + D V L +LE+G +C +
Sbjct: 206 LKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEED 265
Query: 167 VIFHCDAAQAVGKIDINIQNYK------VDLMSFSAHKIYGPKGIGALYIRRNPRTRIEA 220
+ H DAA A + D +F+ HK + + A
Sbjct: 266 IWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGA 325
Query: 221 QIHGGGHEYGLRSG----TLATHQIVGMGEAFRLARIEM----------KEELKRILFLQ 266
+ G T H + +G FR ++ + +++ + L
Sbjct: 326 FKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLS 385
Query: 267 KRLYNGLMESIE-EIYINGDMNNRIPHNLNISFNFIEGESLLMAIKDIAVSSGSA-CTSA 324
+++ E+ + + F + L A+ + S+
Sbjct: 386 HEFEAFVLQDPRFEVCAEVTLG-------LVCFRLKGSDGLNEALLERINSARKIHLVPC 438
Query: 325 SLEPSYVLRALGCNDELAHSSIRFTIG-RFTTEKEIDFTIKLLK 367
L +VL RF I R + + ++
Sbjct: 439 RLRGQFVL--------------RFAICSRKVESGHVRLAWEHIR 468
|
| >d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]} Length = 163 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Plasmid segregation protein ParM species: Escherichia coli [TaxId: 562]
Score = 71.5 bits (174), Expect = 2e-14
Identities = 26/188 (13%), Positives = 61/188 (32%), Gaps = 29/188 (15%)
Query: 812 DKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAF 871
+ + + + + DLGG T DIS + + + GDS+LG
Sbjct: 2 ELDELDSL-LIIDLGGTTLDISQ--VMGKLSGISKIYGDSSLGVSLVT------------ 46
Query: 872 LKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNR 931
+ + + S + + + D + I+ + +I +N
Sbjct: 47 ---------SAVKDALSLARTKGSSYLADDIIIHRKDNNYLKQRINDENKISIVTEAMNE 97
Query: 932 TILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSI---DPDKAVV 988
+ + +++ +V+++GG + I + V + + +V
Sbjct: 98 ALRKLEQRVLNTLNEFSGYTHVMVIGGGAEL--ICDAVKKHTQIRDERFFKTNNSQYDLV 155
Query: 989 FGAAIQAN 996
G + N
Sbjct: 156 NGMYLIGN 163
|
| >d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]} Length = 163 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Plasmid segregation protein ParM species: Escherichia coli [TaxId: 562]
Score = 71.5 bits (174), Expect = 2e-14
Identities = 26/188 (13%), Positives = 61/188 (32%), Gaps = 29/188 (15%)
Query: 2208 DKNIFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAF 2267
+ + + + + DLGG T DIS + + + GDS+LG
Sbjct: 2 ELDELDSL-LIIDLGGTTLDISQ--VMGKLSGISKIYGDSSLGVSLVT------------ 46
Query: 2268 LKKLSYKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNR 2327
+ + + S + + + D + I+ + +I +N
Sbjct: 47 ---------SAVKDALSLARTKGSSYLADDIIIHRKDNNYLKQRINDENKISIVTEAMNE 97
Query: 2328 TILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSI---DPDKAVV 2384
+ + +++ +V+++GG + I + V + + +V
Sbjct: 98 ALRKLEQRVLNTLNEFSGYTHVMVIGGGAEL--ICDAVKKHTQIRDERFFKTNNSQYDLV 155
Query: 2385 FGAAIQAN 2392
G + N
Sbjct: 156 NGMYLIGN 163
|
| >d1xlqa1 d.15.4.1 (A:1-106) 2Fe-2S ferredoxin {Pseudomonas putida, putidaredoxin [TaxId: 303]} Length = 106 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: 2Fe-2S ferredoxin-like family: 2Fe-2S ferredoxin-related domain: 2Fe-2S ferredoxin species: Pseudomonas putida, putidaredoxin [TaxId: 303]
Score = 66.6 bits (162), Expect = 2e-13
Identities = 29/70 (41%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 2536 NSGISLCDALLKNSIF-IEHACEKSCACATCHVIIREG-FNEINKANEVEEDMLNK-AWG 2592
G+SL A + N I+ I C S +CATCHV + E +++ ANE E ML
Sbjct: 18 ADGVSLMQAAVSNGIYDIVGDCGGSASCATCHVYVNEAFTDKVPAANEREIGMLESVTAE 77
Query: 2593 LEENSRLSCQ 2602
L+ NSRL CQ
Sbjct: 78 LKPNSRLCCQ 87
|
| >d1xlqa1 d.15.4.1 (A:1-106) 2Fe-2S ferredoxin {Pseudomonas putida, putidaredoxin [TaxId: 303]} Length = 106 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: 2Fe-2S ferredoxin-like family: 2Fe-2S ferredoxin-related domain: 2Fe-2S ferredoxin species: Pseudomonas putida, putidaredoxin [TaxId: 303]
Score = 58.9 bits (142), Expect = 8e-11
Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 1140 NSGISLCDALLKNSIF-IEHACEKSCACATCHVIIREG-FNEINKANEVEEDMLNK-AWG 1196
G+SL A + N I+ I C S +CATCHV + E +++ ANE E ML
Sbjct: 18 ADGVSLMQAAVSNGIYDIVGDCGGSASCATCHVYVNEAFTDKVPAANEREIGMLESVTAE 77
Query: 1197 LEENSRLS 1204
L+ NSRL
Sbjct: 78 LKPNSRLC 85
|
| >d1b9ra_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Pseudomonas sp., terpredoxin [TaxId: 306]} Length = 105 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: 2Fe-2S ferredoxin-like family: 2Fe-2S ferredoxin-related domain: 2Fe-2S ferredoxin species: Pseudomonas sp., terpredoxin [TaxId: 306]
Score = 66.2 bits (161), Expect = 2e-13
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 2538 GISLCDALLKNSIF-IEHACEKSCACATCHVIIREGFNE-INKANEVEEDMLNKAW-GLE 2594
G SL + +N + I C SC CATC + I + + E + +AN E D+L +
Sbjct: 20 GQSLMEVATQNGVPGIVAECGGSCVCATCRIEIEDAWVEIVGEANPDENDLLQSTGEPMT 79
Query: 2595 ENSRLSCQ 2602
+RLSCQ
Sbjct: 80 AGTRLSCQ 87
|
| >d1b9ra_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Pseudomonas sp., terpredoxin [TaxId: 306]} Length = 105 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: 2Fe-2S ferredoxin-like family: 2Fe-2S ferredoxin-related domain: 2Fe-2S ferredoxin species: Pseudomonas sp., terpredoxin [TaxId: 306]
Score = 58.5 bits (141), Expect = 1e-10
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 1142 GISLCDALLKNSIF-IEHACEKSCACATCHVIIREGFNE-INKANEVEEDMLNKAW-GLE 1198
G SL + +N + I C SC CATC + I + + E + +AN E D+L +
Sbjct: 20 GQSLMEVATQNGVPGIVAECGGSCVCATCRIEIEDAWVEIVGEANPDENDLLQSTGEPMT 79
Query: 1199 ENSRLS 1204
+RLS
Sbjct: 80 AGTRLS 85
|
| >d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]} Length = 360 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Escherichia coli [TaxId: 562]
Score = 69.8 bits (169), Expect = 1e-12
Identities = 43/380 (11%), Positives = 93/380 (24%), Gaps = 41/380 (10%)
Query: 7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAE--KAIEKARNEVAQLIYA-DPREIIW 63
+ V+ + LR G S + E + E+A + L+ ++++
Sbjct: 10 AMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVPSNYKVLF 69
Query: 64 TSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGL 123
G A K +I++ + +
Sbjct: 70 CHGGGR----GQFAAVPLNILGDKTTADYVDAGYWAASAIKEAKKYCTPNVFDAKVTVDG 125
Query: 124 ITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDIN 183
+ + + + NE I E V+ D + + I+
Sbjct: 126 LRAVKPMREWQLSDNAAYMHYCPNETIDGIAIDETP--DFGADVVVAADFSSTILSRPID 183
Query: 184 IQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEY----GLRSGTLATH 239
+ Y V + I + + I + +
Sbjct: 184 VSRYGVIYAGAQKNIGPAGLTIVIVREDLLGKANIACPSILDYSILNDNGSMFNTPPTFA 243
Query: 240 QIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN 299
+ L E+ +I + L G++++ + + NR +N+ F
Sbjct: 244 WYLSGLVFKWLKANGGVAEMDKINQQKAELLYGVIDNSDFYRNDVAKRNR--SRMNVPFQ 301
Query: 300 FIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSS---IRFTIGRFTTE 356
+ K A G + H +R +I
Sbjct: 302 LADSA----LDKLFLE---------------ESFAAGLHALKGHRVVGGMRASIYNAMPL 342
Query: 357 KEIDFTIKLLK-MKEFFMSY 375
+ + L M EF +
Sbjct: 343 EGVK---ALTDFMVEFERRH 359
|
| >d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]} Length = 360 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Escherichia coli [TaxId: 562]
Score = 69.8 bits (169), Expect = 1e-12
Identities = 43/380 (11%), Positives = 93/380 (24%), Gaps = 41/380 (10%)
Query: 1403 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAE--KAIEKARNEVAQLIYA-DPREIIW 1459
+ V+ + LR G S + E + E+A + L+ ++++
Sbjct: 10 AMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVPSNYKVLF 69
Query: 1460 TSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGL 1519
G A K +I++ + +
Sbjct: 70 CHGGGR----GQFAAVPLNILGDKTTADYVDAGYWAASAIKEAKKYCTPNVFDAKVTVDG 125
Query: 1520 ITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDIN 1579
+ + + + NE I E V+ D + + I+
Sbjct: 126 LRAVKPMREWQLSDNAAYMHYCPNETIDGIAIDETP--DFGADVVVAADFSSTILSRPID 183
Query: 1580 IQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEY----GLRSGTLATH 1635
+ Y V + I + + I + +
Sbjct: 184 VSRYGVIYAGAQKNIGPAGLTIVIVREDLLGKANIACPSILDYSILNDNGSMFNTPPTFA 243
Query: 1636 QIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN 1695
+ L E+ +I + L G++++ + + NR +N+ F
Sbjct: 244 WYLSGLVFKWLKANGGVAEMDKINQQKAELLYGVIDNSDFYRNDVAKRNR--SRMNVPFQ 301
Query: 1696 FIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSS---IRFTIGRFTTE 1752
+ K A G + H +R +I
Sbjct: 302 LADSA----LDKLFLE---------------ESFAAGLHALKGHRVVGGMRASIYNAMPL 342
Query: 1753 KEIDFTIKLLK-MKEFFMSY 1771
+ + L M EF +
Sbjct: 343 EGVK---ALTDFMVEFERRH 359
|
| >d2fsja1 c.55.1.12 (A:165-325) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Ta0583-like domain: Hypothetical protein Ta0583 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 63.6 bits (154), Expect = 7e-12
Identities = 29/176 (16%), Positives = 48/176 (27%), Gaps = 29/176 (16%)
Query: 817 EGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLS 876
G V D+G T D+ + + V+ + +G D L I K
Sbjct: 5 PGYGVVIDVGSRTTDVLTINLMDMEP-VVELSFSLQIGVGDAISALSRKIAKETGFVVPF 63
Query: 877 YKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNRTILLS 936
+ + +K V + L NR I
Sbjct: 64 DLAQEA------------------LSHPVMFRQKQVGGPEVSGPIL---EDLANRIIENI 102
Query: 937 SKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSI--DPDKAVVFG 990
L + + ++I VGG + + I + TL+ D A G
Sbjct: 103 RLNLRGE---VDRVTSLIPVGGGSNL--IGDRFEEIAPGTLVKIKPEDLQFANALG 153
|
| >d2fsja1 c.55.1.12 (A:165-325) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Ta0583-like domain: Hypothetical protein Ta0583 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 63.6 bits (154), Expect = 7e-12
Identities = 29/176 (16%), Positives = 48/176 (27%), Gaps = 29/176 (16%)
Query: 2213 EGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLS 2272
G V D+G T D+ + + V+ + +G D L I K
Sbjct: 5 PGYGVVIDVGSRTTDVLTINLMDMEP-VVELSFSLQIGVGDAISALSRKIAKETGFVVPF 63
Query: 2273 YKDVNILMIKSREIKELLSYQSSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNRTILLS 2332
+ + +K V + L NR I
Sbjct: 64 DLAQEA------------------LSHPVMFRQKQVGGPEVSGPIL---EDLANRIIENI 102
Query: 2333 SKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSI--DPDKAVVFG 2386
L + + ++I VGG + + I + TL+ D A G
Sbjct: 103 RLNLRGE---VDRVTSLIPVGGGSNL--IGDRFEEIAPGTLVKIKPEDLQFANALG 153
|
| >d1e9ma_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Rhodobacter capsulatus, ferredoxin VI [TaxId: 1061]} Length = 106 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: 2Fe-2S ferredoxin-like family: 2Fe-2S ferredoxin-related domain: 2Fe-2S ferredoxin species: Rhodobacter capsulatus, ferredoxin VI [TaxId: 1061]
Score = 61.2 bits (148), Expect = 1e-11
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 2536 NSGISLCDALLKNSI-FIEHACEKSCACATCHVIIREGFNE-INKANEVEEDMLNKAWGL 2593
G+++ +A N + I+ C +CAC+TCH + + + + KA E DM++ A+
Sbjct: 18 KPGLTVMEAARDNGVPGIDADCGGACACSTCHAYVDPAWVDKLPKALPTETDMIDFAYEP 77
Query: 2594 -EENSRLSCQ 2602
SRL+CQ
Sbjct: 78 NPATSRLTCQ 87
|
| >d1e9ma_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Rhodobacter capsulatus, ferredoxin VI [TaxId: 1061]} Length = 106 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: 2Fe-2S ferredoxin-like family: 2Fe-2S ferredoxin-related domain: 2Fe-2S ferredoxin species: Rhodobacter capsulatus, ferredoxin VI [TaxId: 1061]
Score = 54.7 bits (131), Expect = 3e-09
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 1140 NSGISLCDALLKNSI-FIEHACEKSCACATCHVIIREGFNE-INKANEVEEDMLNKAWGL 1197
G+++ +A N + I+ C +CAC+TCH + + + + KA E DM++ A+
Sbjct: 18 KPGLTVMEAARDNGVPGIDADCGGACACSTCHAYVDPAWVDKLPKALPTETDMIDFAYEP 77
Query: 1198 -EENSRLSFDAK 1208
SRL+ K
Sbjct: 78 NPATSRLTCQIK 89
|
| >d1s98a_ b.124.1.1 (A:) Fe-S scaffold protein IscA (YfhF) {Escherichia coli [TaxId: 562]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: HesB-like domain superfamily: HesB-like domain family: HesB-like domain domain: Fe-S scaffold protein IscA (YfhF) species: Escherichia coli [TaxId: 562]
Score = 59.6 bits (144), Expect = 3e-11
Identities = 30/73 (41%), Positives = 47/73 (64%)
Query: 470 VTKKAAKYINKYIQKRGKGIGLRLGVYNRGCSGLSYKLEYVDEKRKEDQVFKLNGVQIFI 529
++ AA +N ++ RGKG GLRLGV GCSG++Y LE+VDE ED VF+ GV++ +
Sbjct: 4 LSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVV 63
Query: 530 NEKDLLYFNDNFI 542
+ K + + + +
Sbjct: 64 DGKSMQFLDGTQL 76
|
| >d1s98a_ b.124.1.1 (A:) Fe-S scaffold protein IscA (YfhF) {Escherichia coli [TaxId: 562]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: HesB-like domain superfamily: HesB-like domain family: HesB-like domain domain: Fe-S scaffold protein IscA (YfhF) species: Escherichia coli [TaxId: 562]
Score = 59.6 bits (144), Expect = 3e-11
Identities = 30/73 (41%), Positives = 47/73 (64%)
Query: 1866 VTKKAAKYINKYIQKRGKGIGLRLGVYNRGCSGLSYKLEYVDEKRKEDQVFKLNGVQIFI 1925
++ AA +N ++ RGKG GLRLGV GCSG++Y LE+VDE ED VF+ GV++ +
Sbjct: 4 LSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVV 63
Query: 1926 NEKDLLYFNDNFI 1938
+ K + + + +
Sbjct: 64 DGKSMQFLDGTQL 76
|
| >d2fug33 d.15.4.2 (3:1-95) Nadh-quinone oxidoreductase chain 3, Nqo3, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 95 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: 2Fe-2S ferredoxin-like family: 2Fe-2S ferredoxin domains from multidomain proteins domain: Nadh-quinone oxidoreductase chain 3, Nqo3, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Score = 56.4 bits (135), Expect = 4e-10
Identities = 15/79 (18%), Positives = 22/79 (27%), Gaps = 6/79 (7%)
Query: 2529 NGAIFNENSGISLCDALLKNSIFIEHAC-----EKSCACATCHVIIREGFNEINKANEVE 2583
N I G S+ DA+ + C AC C V I + +
Sbjct: 7 NDRIVEVPPGTSVMDAVFHAGYDVPLFCSEKHLSPIGACRMCLVRIGLPKKGPDGKPLLN 66
Query: 2584 EDMLNKAWGLEENSRLSCQ 2602
E + + SC
Sbjct: 67 EKGEPEIQW-QPKLAASCV 84
|
| >d2fug33 d.15.4.2 (3:1-95) Nadh-quinone oxidoreductase chain 3, Nqo3, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 95 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: 2Fe-2S ferredoxin-like family: 2Fe-2S ferredoxin domains from multidomain proteins domain: Nadh-quinone oxidoreductase chain 3, Nqo3, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Score = 49.5 bits (117), Expect = 1e-07
Identities = 14/77 (18%), Positives = 21/77 (27%), Gaps = 6/77 (7%)
Query: 1133 NGAIFNENSGISLCDALLKNSIFIEHAC-----EKSCACATCHVIIREGFNEINKANEVE 1187
N I G S+ DA+ + C AC C V I + +
Sbjct: 7 NDRIVEVPPGTSVMDAVFHAGYDVPLFCSEKHLSPIGACRMCLVRIGLPKKGPDGKPLLN 66
Query: 1188 EDMLNKAWGLEENSRLS 1204
E + + S
Sbjct: 67 EKGEPEIQW-QPKLAAS 82
|
| >d1nwba_ b.124.1.1 (A:) Hypothetical protein Aq_1857 {Aquifex aeolicus [TaxId: 63363]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: HesB-like domain superfamily: HesB-like domain family: HesB-like domain domain: Hypothetical protein Aq 1857 species: Aquifex aeolicus [TaxId: 63363]
Score = 48.2 bits (114), Expect = 4e-07
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 470 VTKKAAKYINKYIQKRG-KGIGLRLGVYNRGCSGLSYKLEYVDEKRKEDQVFKLNGVQIF 528
VT KA + I K Q+ + LR+ V GCSG Y + + D + D VF+ +GV++
Sbjct: 12 VTDKAVEEIKKVAQENNIENPILRIRVVPGGCSGFQYAMGFDDTVEEGDHVFEYDGVKVV 71
Query: 529 INEKDLLYFNDNFIQKSKID 548
I+ + Y + +++D
Sbjct: 72 IDPFSMPY-----VNGAELD 86
|
| >d1nwba_ b.124.1.1 (A:) Hypothetical protein Aq_1857 {Aquifex aeolicus [TaxId: 63363]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: HesB-like domain superfamily: HesB-like domain family: HesB-like domain domain: Hypothetical protein Aq 1857 species: Aquifex aeolicus [TaxId: 63363]
Score = 48.2 bits (114), Expect = 4e-07
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 1866 VTKKAAKYINKYIQKRG-KGIGLRLGVYNRGCSGLSYKLEYVDEKRKEDQVFKLNGVQIF 1924
VT KA + I K Q+ + LR+ V GCSG Y + + D + D VF+ +GV++
Sbjct: 12 VTDKAVEEIKKVAQENNIENPILRIRVVPGGCSGFQYAMGFDDTVEEGDHVFEYDGVKVV 71
Query: 1925 INEKDLLYFNDNFIQKSKID 1944
I+ + Y + +++D
Sbjct: 72 IDPFSMPY-----VNGAELD 86
|
| >d1doia_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 128 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: 2Fe-2S ferredoxin-like family: 2Fe-2S ferredoxin-related domain: 2Fe-2S ferredoxin species: Archaeon Haloarcula marismortui [TaxId: 2238]
Score = 46.4 bits (110), Expect = 3e-06
Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Query: 2536 NSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVEEDMLNKAWGLEE 2595
N G + +A +C ++ ACA C I+ EG + + +L+ ++
Sbjct: 43 NEGEYILEAAEAQGYDWPFSC-RAGACANCAAIVLEG-----DIDMDMQQILSDEEVEDK 96
Query: 2596 NSRLSCQ 2602
N RL+C
Sbjct: 97 NVRLTCI 103
|
| >d1doia_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 128 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: 2Fe-2S ferredoxin-like family: 2Fe-2S ferredoxin-related domain: 2Fe-2S ferredoxin species: Archaeon Haloarcula marismortui [TaxId: 2238]
Score = 39.5 bits (92), Expect = 0.001
Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
Query: 1140 NSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVEEDMLNKAWGLEE 1199
N G + +A +C ++ ACA C I+ EG + + +L+ ++
Sbjct: 43 NEGEYILEAAEAQGYDWPFSC-RAGACANCAAIVLEG-----DIDMDMQQILSDEEVEDK 96
Query: 1200 NSRLS 1204
N RL+
Sbjct: 97 NVRLT 101
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} Length = 368 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Score = 49.0 bits (115), Expect = 6e-06
Identities = 51/338 (15%), Positives = 99/338 (29%), Gaps = 25/338 (7%)
Query: 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGA 67
P P +++ + L R Y A + R +A+ +P ++ TSGA
Sbjct: 38 PPPPFLLEAVRRAL--------GRQDQYAPPA--GLPALREALAEEFAVEPESVVVTSGA 87
Query: 68 TESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLS 127
TE+ + G ++ ++ L V + LS
Sbjct: 88 TEA----LYVLLQSLVGPGDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLS 143
Query: 128 QLEEKICSDTILVSVMLVNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQAVGKIDINI 184
LE+ + T + + N G++ + I L R+ + D
Sbjct: 144 ALEKALTPRTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERP 203
Query: 185 QNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGM 244
+ + + K + A R + + S + T G+
Sbjct: 204 RRLREFAPERTFTVGSAGKRLEATGYRVGWIVGPKEFMPRLAGMRQWTSFSAPTPLQAGV 263
Query: 245 GEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGE 304
EA +LAR E E R + ++R + + +P + G
Sbjct: 264 AEALKLARREGFYEALREGYRRRRDLLAGGLRAMGLRVY------VPEGTYFLMAELPGW 317
Query: 305 SLLMAIKD--IAVSSGSACTSASLEPSYVLRALGCNDE 340
+++ +A+ SA A +E
Sbjct: 318 DAFRLVEEARVALIPASAFYLEDPPKDLFRFAFCKTEE 355
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} Length = 368 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Score = 49.0 bits (115), Expect = 6e-06
Identities = 51/338 (15%), Positives = 99/338 (29%), Gaps = 25/338 (7%)
Query: 1404 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGA 1463
P P +++ + L R Y A + R +A+ +P ++ TSGA
Sbjct: 38 PPPPFLLEAVRRAL--------GRQDQYAPPA--GLPALREALAEEFAVEPESVVVTSGA 87
Query: 1464 TESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLS 1523
TE+ + G ++ ++ L V + LS
Sbjct: 88 TEA----LYVLLQSLVGPGDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLS 143
Query: 1524 QLEEKICSDTILVSVMLVNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQAVGKIDINI 1580
LE+ + T + + N G++ + I L R+ + D
Sbjct: 144 ALEKALTPRTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERP 203
Query: 1581 QNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGM 1640
+ + + K + A R + + S + T G+
Sbjct: 204 RRLREFAPERTFTVGSAGKRLEATGYRVGWIVGPKEFMPRLAGMRQWTSFSAPTPLQAGV 263
Query: 1641 GEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGE 1700
EA +LAR E E R + ++R + + +P + G
Sbjct: 264 AEALKLARREGFYEALREGYRRRRDLLAGGLRAMGLRVY------VPEGTYFLMAELPGW 317
Query: 1701 SLLMAIKD--IAVSSGSACTSASLEPSYVLRALGCNDE 1736
+++ +A+ SA A +E
Sbjct: 318 DAFRLVEEARVALIPASAFYLEDPPKDLFRFAFCKTEE 355
|
| >d1krha3 d.15.4.2 (A:2-105) Benzoate dioxygenase reductase, N-terminal domain {Acinetobacter sp. [TaxId: 472]} Length = 104 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: 2Fe-2S ferredoxin-like family: 2Fe-2S ferredoxin domains from multidomain proteins domain: Benzoate dioxygenase reductase, N-terminal domain species: Acinetobacter sp. [TaxId: 472]
Score = 44.9 bits (106), Expect = 6e-06
Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
Query: 2536 NSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVEEDMLNKAWGLEE 2595
G +L DA + I I C + C TC G ++ + N +E+ + ++
Sbjct: 20 AQGETLSDAAYRQQINIPMDC-REGECGTCRAFCESGNYDMPEDNYIEDAL--TPEEAQQ 76
Query: 2596 NSRLSCQ 2602
L+CQ
Sbjct: 77 GYVLACQ 83
|
| >d1krha3 d.15.4.2 (A:2-105) Benzoate dioxygenase reductase, N-terminal domain {Acinetobacter sp. [TaxId: 472]} Length = 104 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: 2Fe-2S ferredoxin-like family: 2Fe-2S ferredoxin domains from multidomain proteins domain: Benzoate dioxygenase reductase, N-terminal domain species: Acinetobacter sp. [TaxId: 472]
Score = 38.0 bits (88), Expect = 0.001
Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 3/65 (4%)
Query: 1140 NSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVEEDMLNKAWGLEE 1199
G +L DA + I I C + C TC G ++ + N +E+ + ++
Sbjct: 20 AQGETLSDAAYRQQINIPMDC-REGECGTCRAFCESGNYDMPEDNYIEDAL--TPEEAQQ 76
Query: 1200 NSRLS 1204
L+
Sbjct: 77 GYVLA 81
|
| >d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 76 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Long alpha-hairpin superfamily: Chaperone J-domain family: Chaperone J-domain domain: HSC20 (HSCB), N-terminal (J) domain species: Escherichia coli [TaxId: 562]
Score = 41.2 bits (96), Expect = 7e-05
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 534 LLYFNDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKLNG 581
Y D F S+ +Q A+V+ S +N+A+ L+ P +R+ YL L+G
Sbjct: 29 RQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLHG 76
|
| >d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 76 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Long alpha-hairpin superfamily: Chaperone J-domain family: Chaperone J-domain domain: HSC20 (HSCB), N-terminal (J) domain species: Escherichia coli [TaxId: 562]
Score = 41.2 bits (96), Expect = 7e-05
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 1930 LLYFNDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKLNG 1977
Y D F S+ +Q A+V+ S +N+A+ L+ P +R+ YL L+G
Sbjct: 29 RQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLHG 76
|
| >d1a70a_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 97 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: 2Fe-2S ferredoxin-like family: 2Fe-2S ferredoxin-related domain: 2Fe-2S ferredoxin species: Spinach (Spinacia oleracea) [TaxId: 3562]
Score = 40.8 bits (95), Expect = 1e-04
Identities = 12/70 (17%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Query: 2533 FNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVEEDMLNKAWG 2592
F + + DA + I + + ++ +C++C ++ G N+ ++ L+
Sbjct: 16 FQCPDDVYILDAAEEEGIDLPY-SCRAGSCSSCAGKLKTG-----SLNQDDQSFLDDDQ- 68
Query: 2593 LEENSRLSCQ 2602
++E L+C
Sbjct: 69 IDEGWVLTCA 78
|
| >d1a70a_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 97 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: 2Fe-2S ferredoxin-like family: 2Fe-2S ferredoxin-related domain: 2Fe-2S ferredoxin species: Spinach (Spinacia oleracea) [TaxId: 3562]
Score = 37.3 bits (86), Expect = 0.002
Identities = 10/61 (16%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 1137 FNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVEEDMLNKAWG 1196
F + + DA + I + + ++ +C++C ++ G + + +++D +++ W
Sbjct: 16 FQCPDDVYILDAAEEEGIDLPY-SCRAGSCSSCAGKLKTGSLNQDDQSFLDDDQIDEGWV 74
Query: 1197 L 1197
L
Sbjct: 75 L 75
|
| >d1jq4a_ d.15.4.2 (A:) Methane monooxygenase reductase N-terminal domain {Methylococcus capsulatus [TaxId: 414]} Length = 98 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: 2Fe-2S ferredoxin-like family: 2Fe-2S ferredoxin domains from multidomain proteins domain: Methane monooxygenase reductase N-terminal domain species: Methylococcus capsulatus [TaxId: 414]
Score = 40.7 bits (95), Expect = 2e-04
Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
Query: 2533 FNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVEEDMLNKAWG 2592
F S + A L+ +IF+ +C + CATC + EG ++ + + G
Sbjct: 19 FECRSDEDVITAALRQNIFLMSSC-REGGCATCKALCSEGDYDLKGCSVQALPPEEEEEG 77
Query: 2593 LEENSRLSCQ 2602
L L C+
Sbjct: 78 L----VLLCR 83
|
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} Length = 343 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Score = 43.2 bits (100), Expect = 3e-04
Identities = 43/380 (11%), Positives = 103/380 (27%), Gaps = 56/380 (14%)
Query: 1400 DATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIW 1459
D T + M + + G+ YG + I + A+ + ++
Sbjct: 7 DTVTKPTEEMRKAMA---QAEVGDDV-----YG--EDPTINELERLAAETFGKE--AALF 54
Query: 1460 TSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGL 1519
T N ++I + ++ + + + + + P NG
Sbjct: 55 VPSGTMGNQVSIMAHTQRG-----DEVILEADSHIFWYEVGAMAVLSGVMPHPVPGKNGA 109
Query: 1520 ITLSQLEEKICS------DTILVSVMLVNNEIGV----IQPILEIGELCRSKGVIFHCDA 1569
+ + + I T L+++ +N G ++ I EI + + G+ H D
Sbjct: 110 MDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDG 169
Query: 1570 AQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRS 1629
A+ + K + KG+ A R + +
Sbjct: 170 ARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAPVGSVVVGDRDFIERARKARKMLGGG 229
Query: 1630 GTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHN 1689
A L +++ K + ++ G N
Sbjct: 230 MRQAGV-----------LAAAGIIALTKMVDRLKEDHENARFLALKLKEIGYSVNPEDVK 278
Query: 1690 LNISFNFIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRF 1749
N+ + + + A + A+ + IR +
Sbjct: 279 TNMVILRTDNLKV----------NAHGFIEALRNSGVLANAVS------DTEIRLVTHKD 322
Query: 1750 TTEKEIDFTIKLLK--MKEF 1767
+ +I+ + + + ++F
Sbjct: 323 VSRNDIEEALNIFEKLFRKF 342
|
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} Length = 343 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Score = 41.7 bits (96), Expect = 0.001
Identities = 42/377 (11%), Positives = 102/377 (27%), Gaps = 56/377 (14%)
Query: 7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSG 66
T + M + + G+ YG + I + A+ + ++
Sbjct: 10 TKPTEEMRKAMA---QAEVGDDV-----YG--EDPTINELERLAAETFGKE--AALFVPS 57
Query: 67 ATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITL 126
T N ++I + ++ + + + + + P NG +
Sbjct: 58 GTMGNQVSIMAHTQRG-----DEVILEADSHIFWYEVGAMAVLSGVMPHPVPGKNGAMDP 112
Query: 127 SQLEEKICS------DTILVSVMLVNNEIGV----IQPILEIGELCRSKGVIFHCDAAQA 176
+ + I T L+++ +N G ++ I EI + + G+ H D A+
Sbjct: 113 DDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARI 172
Query: 177 VGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTL 236
+ K + KG+ A R + +
Sbjct: 173 FNASIASGVPVKEYAGYADSVMFCLSKGLCAPVGSVVVGDRDFIERARKARKMLGGGMRQ 232
Query: 237 ATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNI 296
A L +++ K + ++ G N N+
Sbjct: 233 AGV-----------LAAAGIIALTKMVDRLKEDHENARFLALKLKEIGYSVNPEDVKTNM 281
Query: 297 SFNFIEGESLLMAIKDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTE 356
+ + + A + A+ + IR + +
Sbjct: 282 VILRTDNLKV----------NAHGFIEALRNSGVLANAVS------DTEIRLVTHKDVSR 325
Query: 357 KEIDFTIKLLK--MKEF 371
+I+ + + + ++F
Sbjct: 326 NDIEEALNIFEKLFRKF 342
|
| >d1frda_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Cyanobacterium (Anabaena sp.), pcc 7119 and 7120 [TaxId: 1167]} Length = 98 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: 2Fe-2S ferredoxin-like family: 2Fe-2S ferredoxin-related domain: 2Fe-2S ferredoxin species: Cyanobacterium (Anabaena sp.), pcc 7119 and 7120 [TaxId: 1167]
Score = 36.9 bits (85), Expect = 0.003
Identities = 11/67 (16%), Positives = 28/67 (41%), Gaps = 7/67 (10%)
Query: 2536 NSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVEEDMLNKAWGLEE 2595
+ ++ D +N I + +C S +C++C + EG + + +++ + +
Sbjct: 21 DEETTILDGAEENGIELPFSC-HSGSCSSCVGKVVEGEVDQSDQIFLDD------EQMGK 73
Query: 2596 NSRLSCQ 2602
L C
Sbjct: 74 GFALLCV 80
|
| >d1frra_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Equisetum arvense [TaxId: 3258]} Length = 95 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: 2Fe-2S ferredoxin-like family: 2Fe-2S ferredoxin-related domain: 2Fe-2S ferredoxin species: Equisetum arvense [TaxId: 3258]
Score = 36.5 bits (84), Expect = 0.004
Identities = 10/70 (14%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Query: 2533 FNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVEEDMLNKAWG 2592
+ G ++ DA + + +C ++ AC++C + G + ++ + +++ + + +
Sbjct: 15 LDVPEGTTILDAAEEAGYDLPFSC-RAGACSSCLGKVVSGSVDESEGSFLDDGQMEEGF- 72
Query: 2593 LEENSRLSCQ 2602
L+C
Sbjct: 73 -----VLTCI 77
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2602 | |||
| d1kona_ | 244 | Hypothetical protein YebC {Escherichia coli [TaxId | 100.0 | |
| d1lfpa_ | 243 | Hypothetical protein aq1575 {Aquifex aeolicus [Tax | 100.0 | |
| d1mw7a_ | 220 | Hypothetical protein HP0162 {Helicobacter pylori [ | 100.0 | |
| d1p3wa_ | 391 | Cysteine desulfurase IscS {Escherichia coli [TaxId | 100.0 | |
| d1jf9a_ | 405 | NifS-like protein/selenocysteine lyase {Escherichi | 100.0 | |
| d1p3wa_ | 391 | Cysteine desulfurase IscS {Escherichia coli [TaxId | 100.0 | |
| d1t3ia_ | 408 | Probable cysteine desulfurase SufS {Synechocystis | 100.0 | |
| d1jf9a_ | 405 | NifS-like protein/selenocysteine lyase {Escherichi | 100.0 | |
| d1eg5a_ | 376 | NifS-like protein/selenocysteine lyase {Thermotoga | 100.0 | |
| d1t3ia_ | 408 | Probable cysteine desulfurase SufS {Synechocystis | 100.0 | |
| d1eg5a_ | 376 | NifS-like protein/selenocysteine lyase {Thermotoga | 100.0 | |
| d1elua_ | 381 | Cystine C-S lyase C-des {Synechocystis sp. [TaxId: | 100.0 | |
| d1elua_ | 381 | Cystine C-S lyase C-des {Synechocystis sp. [TaxId: | 100.0 | |
| d1dkgd1 | 183 | Heat shock protein 70kDa, ATPase fragment {Escheri | 99.97 | |
| d1bupa2 | 193 | Heat shock protein 70kDa, ATPase fragment {Cow (Bo | 99.97 | |
| d1dkgd2 | 198 | Heat shock protein 70kDa, ATPase fragment {Escheri | 99.97 | |
| d1dkgd1 | 183 | Heat shock protein 70kDa, ATPase fragment {Escheri | 99.97 | |
| d1bupa1 | 185 | Heat shock protein 70kDa, ATPase fragment {Cow (Bo | 99.97 | |
| d1bupa2 | 193 | Heat shock protein 70kDa, ATPase fragment {Cow (Bo | 99.96 | |
| d1dkgd2 | 198 | Heat shock protein 70kDa, ATPase fragment {Escheri | 99.96 | |
| d1bupa1 | 185 | Heat shock protein 70kDa, ATPase fragment {Cow (Bo | 99.96 | |
| d1qz9a_ | 404 | Kynureninase {Pseudomonas fluorescens [TaxId: 294] | 99.95 | |
| d1qz9a_ | 404 | Kynureninase {Pseudomonas fluorescens [TaxId: 294] | 99.94 | |
| d1h0ca_ | 388 | Alanine-glyoxylate aminotransferase {Human (Homo s | 99.94 | |
| d1m32a_ | 361 | 2-aminoethylphosphonate transaminase {Salmonella t | 99.94 | |
| d1h0ca_ | 388 | Alanine-glyoxylate aminotransferase {Human (Homo s | 99.94 | |
| d1m32a_ | 361 | 2-aminoethylphosphonate transaminase {Salmonella t | 99.93 | |
| d1yuwa1 | 159 | DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.92 | |
| d2bkwa1 | 382 | Alanine-glyoxylate aminotransferase {Baker's yeast | 99.92 | |
| d2bkwa1 | 382 | Alanine-glyoxylate aminotransferase {Baker's yeast | 99.92 | |
| d1j32a_ | 388 | Aspartate aminotransferase, AAT {Phormidium lapide | 99.92 | |
| d1vjoa_ | 377 | Alanine-glyoxylate aminotransferase {Cyanobacteria | 99.91 | |
| d1b5pa_ | 382 | Aspartate aminotransferase, AAT {Thermus thermophi | 99.91 | |
| d2ch1a1 | 388 | 3-hydroxykynurenine transaminase {Malaria mosquito | 99.91 | |
| d1iuga_ | 348 | Subgroup IV putative aspartate aminotransferase {T | 99.91 | |
| d1vjoa_ | 377 | Alanine-glyoxylate aminotransferase {Cyanobacteria | 99.91 | |
| d1iuga_ | 348 | Subgroup IV putative aspartate aminotransferase {T | 99.91 | |
| d1v2da_ | 368 | Glutamine aminotransferase {Thermus thermophilus [ | 99.91 | |
| d1j32a_ | 388 | Aspartate aminotransferase, AAT {Phormidium lapide | 99.9 | |
| d2ch1a1 | 388 | 3-hydroxykynurenine transaminase {Malaria mosquito | 99.9 | |
| d1yuwa1 | 159 | DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.9 | |
| d1b5pa_ | 382 | Aspartate aminotransferase, AAT {Thermus thermophi | 99.9 | |
| d2e7ja1 | 364 | Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl | 99.9 | |
| d1v2da_ | 368 | Glutamine aminotransferase {Thermus thermophilus [ | 99.9 | |
| d2e7ja1 | 364 | Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl | 99.9 | |
| d1dkza2 | 118 | DnaK {Escherichia coli [TaxId: 562]} | 99.89 | |
| d1gdea_ | 388 | Aromatic aminoacid aminotransferase, AroAT {Archae | 99.89 | |
| d1u00a2 | 115 | Chaperone protein hscA (Hsc66) {Escherichia coli [ | 99.89 | |
| d1gdea_ | 388 | Aromatic aminoacid aminotransferase, AroAT {Archae | 99.88 | |
| d1fg7a_ | 354 | Histidinol-phosphate aminotransferase HisC {Escher | 99.88 | |
| d1dkza2 | 118 | DnaK {Escherichia coli [TaxId: 562]} | 99.88 | |
| d1xi9a_ | 395 | Putative alanine aminotransferase {Pyrococcus furi | 99.88 | |
| d1u00a2 | 115 | Chaperone protein hscA (Hsc66) {Escherichia coli [ | 99.87 | |
| d1lc5a_ | 355 | L-threonine-O-3-phosphate decarboxylase CobD {Salm | 99.87 | |
| d1bw0a_ | 412 | Tyrosine aminotransferase (TAT) {Trypanosoma cruzi | 99.87 | |
| d1d2fa_ | 361 | Modulator in mal gene expression, MalY {Escherichi | 99.87 | |
| d1pmma_ | 450 | Glutamate decarboxylase beta, GadB {Escherichia co | 99.86 | |
| d1xi9a_ | 395 | Putative alanine aminotransferase {Pyrococcus furi | 99.86 | |
| d1bw0a_ | 412 | Tyrosine aminotransferase (TAT) {Trypanosoma cruzi | 99.86 | |
| d1o4sa_ | 375 | Aspartate aminotransferase, AAT {Thermotoga mariti | 99.86 | |
| d1pmma_ | 450 | Glutamate decarboxylase beta, GadB {Escherichia co | 99.86 | |
| d1c7na_ | 394 | Cystalysin {Treponema denticola [TaxId: 158]} | 99.86 | |
| d1c7na_ | 394 | Cystalysin {Treponema denticola [TaxId: 158]} | 99.86 | |
| d1fg7a_ | 354 | Histidinol-phosphate aminotransferase HisC {Escher | 99.86 | |
| d1r9pa_ | 134 | NifU-like protein HI0377 {Haemophilus influenzae [ | 99.86 | |
| d1lc5a_ | 355 | L-threonine-O-3-phosphate decarboxylase CobD {Salm | 99.85 | |
| d1d2fa_ | 361 | Modulator in mal gene expression, MalY {Escherichi | 99.85 | |
| d2gb3a1 | 389 | AAT homologue TM1698 {Thermotoga maritima [TaxId: | 99.85 | |
| d2r5ea1 | 418 | Kynurenine--oxoglutarate transaminase I {Yellowfev | 99.84 | |
| d1o4sa_ | 375 | Aspartate aminotransferase, AAT {Thermotoga mariti | 99.84 | |
| d1u08a_ | 382 | Putative methionine aminotransferase YdbL {Escheri | 99.83 | |
| d2f8ja1 | 334 | Histidinol-phosphate aminotransferase HisC {Thermo | 99.83 | |
| d1r9pa_ | 134 | NifU-like protein HI0377 {Haemophilus influenzae [ | 99.83 | |
| d1u08a_ | 382 | Putative methionine aminotransferase YdbL {Escheri | 99.83 | |
| d2r5ea1 | 418 | Kynurenine--oxoglutarate transaminase I {Yellowfev | 99.83 | |
| d2gb3a1 | 389 | AAT homologue TM1698 {Thermotoga maritima [TaxId: | 99.83 | |
| d2c0ra1 | 361 | Phosphoserine aminotransferase, PSAT {Bacillus cir | 99.82 | |
| d1iaya_ | 428 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 99.82 | |
| d1w7la_ | 418 | Kynurenine--oxoglutarate transaminase I {Human (Ho | 99.82 | |
| d1iaya_ | 428 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 99.82 | |
| d1mdoa_ | 376 | Aminotransferase ArnB {Salmonella typhimurium [Tax | 99.82 | |
| d1m7ya_ | 431 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 99.81 | |
| d1w7la_ | 418 | Kynurenine--oxoglutarate transaminase I {Human (Ho | 99.81 | |
| d2f8ja1 | 334 | Histidinol-phosphate aminotransferase HisC {Thermo | 99.81 | |
| d1m7ya_ | 431 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 99.81 | |
| d2c0ra1 | 361 | Phosphoserine aminotransferase, PSAT {Bacillus cir | 99.8 | |
| d1wsta1 | 403 | Multiple substrate aminotransferase, MSAT {Thermoc | 99.8 | |
| d1mdoa_ | 376 | Aminotransferase ArnB {Salmonella typhimurium [Tax | 99.8 | |
| d1w23a_ | 360 | Phosphoserine aminotransferase, PSAT {Bacillus alc | 99.79 | |
| d1bs0a_ | 383 | PLP-dependent acyl-CoA synthase (8-amino-7-oxonano | 99.79 | |
| d1wfza_ | 130 | Iron-sulfur cluster protein U (IscU) {Mouse (Mus m | 99.79 | |
| d1bjna_ | 360 | Phosphoserine aminotransferase, PSAT {Escherichia | 99.79 | |
| d1js3a_ | 476 | DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823] | 99.78 | |
| d1vp4a_ | 420 | Putative aminotransferase TM1131 {Thermotoga marit | 99.78 | |
| d1bjna_ | 360 | Phosphoserine aminotransferase, PSAT {Escherichia | 99.78 | |
| d1w23a_ | 360 | Phosphoserine aminotransferase, PSAT {Bacillus alc | 99.78 | |
| d1wsta1 | 403 | Multiple substrate aminotransferase, MSAT {Thermoc | 99.78 | |
| d1jcea1 | 137 | Prokaryotic actin homolog MreB {Thermotoga maritim | 99.78 | |
| d1js3a_ | 476 | DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823] | 99.77 | |
| d1wfza_ | 130 | Iron-sulfur cluster protein U (IscU) {Mouse (Mus m | 99.77 | |
| d1vp4a_ | 420 | Putative aminotransferase TM1131 {Thermotoga marit | 99.77 | |
| d1c4ka2 | 462 | Ornithine decarboxylase major domain {Lactobacillu | 99.76 | |
| d1c4ka2 | 462 | Ornithine decarboxylase major domain {Lactobacillu | 99.76 | |
| d1bs0a_ | 383 | PLP-dependent acyl-CoA synthase (8-amino-7-oxonano | 99.76 | |
| d2bwna1 | 396 | 5-aminolevulinate synthase {Rhodobacter capsulatus | 99.75 | |
| d1gc0a_ | 392 | Methionine gamma-lyase, MGL {Pseudomonas putida [T | 99.75 | |
| d1jcea1 | 137 | Prokaryotic actin homolog MreB {Thermotoga maritim | 99.75 | |
| d2z67a1 | 434 | Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco | 99.75 | |
| d2z67a1 | 434 | Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco | 99.74 | |
| d1fc4a_ | 401 | 2-amino-3-ketobutyrate CoA ligase {Escherichia col | 99.74 | |
| d2hoxa1 | 425 | Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | 99.73 | |
| d1su0b_ | 136 | IscU homolog SPy0289 {Streptococcus pyogenes [TaxI | 99.73 | |
| d2hoxa1 | 425 | Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | 99.73 | |
| d3bc8a1 | 445 | Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu | 99.73 | |
| d1su0b_ | 136 | IscU homolog SPy0289 {Streptococcus pyogenes [TaxI | 99.73 | |
| d1fc4a_ | 401 | 2-amino-3-ketobutyrate CoA ligase {Escherichia col | 99.72 | |
| d2bwna1 | 396 | 5-aminolevulinate synthase {Rhodobacter capsulatus | 99.72 | |
| d1y4ia1 | 397 | Methionine gamma-lyase, MGL {Citrobacter freundii | 99.72 | |
| d3bc8a1 | 445 | Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu | 99.72 | |
| d1b9ha_ | 384 | 3-amino-5-hydroxybenzoic acid synthase (AHBA synth | 99.72 | |
| d1jcea2 | 196 | Prokaryotic actin homolog MreB {Thermotoga maritim | 99.72 | |
| d1dfoa_ | 416 | Serine hydroxymethyltransferase {Escherichia coli | 99.7 | |
| d1b9ha_ | 384 | 3-amino-5-hydroxybenzoic acid synthase (AHBA synth | 99.7 | |
| d1xjsa_ | 147 | NifU {Bacillus subtilis [TaxId: 1423]} | 99.69 | |
| d2aeua1 | 366 | Hypothetical protein MJ0158 {Archaeon Methanococcu | 99.69 | |
| d1kl1a_ | 405 | Serine hydroxymethyltransferase {Bacillus stearoth | 99.69 | |
| d1jcea2 | 196 | Prokaryotic actin homolog MreB {Thermotoga maritim | 99.69 | |
| d2fnua1 | 371 | Spore coat polysaccharide biosynthesis protein C { | 99.69 | |
| d1xjsa_ | 147 | NifU {Bacillus subtilis [TaxId: 1423]} | 99.69 | |
| d1gc0a_ | 392 | Methionine gamma-lyase, MGL {Pseudomonas putida [T | 99.69 | |
| d2fnua1 | 371 | Spore coat polysaccharide biosynthesis protein C { | 99.69 | |
| d2aeua1 | 366 | Hypothetical protein MJ0158 {Archaeon Methanococcu | 99.68 | |
| d1v72a1 | 345 | Phenylserine aldolase PSALD {Pseudomonas putida [T | 99.68 | |
| d7aata_ | 401 | Aspartate aminotransferase, AAT {Chicken (Gallus g | 99.67 | |
| d7aata_ | 401 | Aspartate aminotransferase, AAT {Chicken (Gallus g | 99.67 | |
| d1o69a_ | 374 | Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam | 99.66 | |
| d1y4ia1 | 397 | Methionine gamma-lyase, MGL {Citrobacter freundii | 99.66 | |
| d1o69a_ | 374 | Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam | 99.65 | |
| d1ibja_ | 380 | Cystathionine beta-lyase, CBL {Thale cress (Arabid | 99.65 | |
| d1qgna_ | 398 | Cystathionine gamma-synthase, CGS {Common tobacco | 99.65 | |
| d2a7va1 | 463 | Serine hydroxymethyltransferase {Human (Homo sapie | 99.65 | |
| d1cs1a_ | 384 | Cystathionine gamma-synthase, CGS {Escherichia col | 99.65 | |
| d1cl1a_ | 391 | Cystathionine beta-lyase, CBL {Escherichia coli [T | 99.63 | |
| d1v72a1 | 345 | Phenylserine aldolase PSALD {Pseudomonas putida [T | 99.63 | |
| d1ajsa_ | 412 | Aspartate aminotransferase, AAT {Pig (Sus scrofa), | 99.63 | |
| d1rv3a_ | 470 | Serine hydroxymethyltransferase {Rabbit (Oryctolag | 99.63 | |
| d2bt6a1 | 104 | Adrenodoxin {Cow (Bos taurus) [TaxId: 9913]} | 99.63 | |
| d1xlqa1 | 106 | 2Fe-2S ferredoxin {Pseudomonas putida, putidaredox | 99.63 | |
| d1b9ra_ | 105 | 2Fe-2S ferredoxin {Pseudomonas sp., terpredoxin [T | 99.62 | |
| d1ajsa_ | 412 | Aspartate aminotransferase, AAT {Pig (Sus scrofa), | 99.62 | |
| d1e5ea_ | 394 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.62 | |
| d2ctza1 | 421 | O-acetyl-L-homoserine sulfhydrylase {Thermus therm | 99.62 | |
| d1svva_ | 340 | Low-specificity threonine aldolase {Leishmania maj | 99.61 | |
| d1pffa_ | 331 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.61 | |
| d3tata_ | 397 | Aromatic aminoacid aminotransferase, AroAT {Escher | 99.61 | |
| d3tata_ | 397 | Aromatic aminoacid aminotransferase, AroAT {Escher | 99.61 | |
| d1s98a_ | 97 | Fe-S scaffold protein IscA (YfhF) {Escherichia col | 99.61 | |
| d1s98a_ | 97 | Fe-S scaffold protein IscA (YfhF) {Escherichia col | 99.6 | |
| d1e9ma_ | 106 | 2Fe-2S ferredoxin {Rhodobacter capsulatus, ferredo | 99.59 | |
| d2q7wa1 | 396 | Aspartate aminotransferase, AAT {Escherichia coli | 99.58 | |
| d1yaaa_ | 412 | Aspartate aminotransferase, AAT {Baker's yeast (Sa | 99.58 | |
| d1svva_ | 340 | Low-specificity threonine aldolase {Leishmania maj | 99.58 | |
| d1ibja_ | 380 | Cystathionine beta-lyase, CBL {Thale cress (Arabid | 99.58 | |
| d2q7wa1 | 396 | Aspartate aminotransferase, AAT {Escherichia coli | 99.57 | |
| d2ay1a_ | 394 | Aromatic aminoacid aminotransferase, AroAT {Paraco | 99.56 | |
| d1m6sa_ | 343 | Low-specificity threonine aldolase {Thermotoga mar | 99.56 | |
| d1cs1a_ | 384 | Cystathionine gamma-synthase, CGS {Escherichia col | 99.56 | |
| d1kl1a_ | 405 | Serine hydroxymethyltransferase {Bacillus stearoth | 99.55 | |
| d1dfoa_ | 416 | Serine hydroxymethyltransferase {Escherichia coli | 99.55 | |
| d1n8pa_ | 393 | Cystathionine gamma-lyase (CYS3) {Baker's yeast (S | 99.54 | |
| d1yaaa_ | 412 | Aspartate aminotransferase, AAT {Baker's yeast (Sa | 99.54 | |
| d1qgna_ | 398 | Cystathionine gamma-synthase, CGS {Common tobacco | 99.54 | |
| d1pffa_ | 331 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.54 | |
| d1c7ga_ | 456 | Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5 | 99.54 | |
| d1l5pa_ | 93 | 2Fe-2S ferredoxin {Trichomonas vaginalis [TaxId: 5 | 99.53 | |
| d2ctza1 | 421 | O-acetyl-L-homoserine sulfhydrylase {Thermus therm | 99.53 | |
| d1nwba_ | 101 | Hypothetical protein Aq_1857 {Aquifex aeolicus [Ta | 99.52 | |
| d1e5ea_ | 394 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.52 | |
| d2ay1a_ | 394 | Aromatic aminoacid aminotransferase, AroAT {Paraco | 99.52 | |
| d1cl1a_ | 391 | Cystathionine beta-lyase, CBL {Escherichia coli [T | 99.52 | |
| d1nwba_ | 101 | Hypothetical protein Aq_1857 {Aquifex aeolicus [Ta | 99.51 | |
| d1i7ha_ | 109 | Adrenodoxin-like ferredoxin {Escherichia coli [Tax | 99.5 | |
| d1c7ga_ | 456 | Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5 | 99.49 | |
| d1m6sa_ | 343 | Low-specificity threonine aldolase {Thermotoga mar | 99.48 | |
| d2a7va1 | 463 | Serine hydroxymethyltransferase {Human (Homo sapie | 99.45 | |
| d1rv3a_ | 470 | Serine hydroxymethyltransferase {Rabbit (Oryctolag | 99.43 | |
| d1n8pa_ | 393 | Cystathionine gamma-lyase (CYS3) {Baker's yeast (S | 99.42 | |
| d2bt6a1 | 104 | Adrenodoxin {Cow (Bos taurus) [TaxId: 9913]} | 99.4 | |
| d1wyua1 | 437 | Glycine dehydrogenase (decarboxylating) subunit 1 | 99.38 | |
| d1xlqa1 | 106 | 2Fe-2S ferredoxin {Pseudomonas putida, putidaredox | 99.37 | |
| d1b9ra_ | 105 | 2Fe-2S ferredoxin {Pseudomonas sp., terpredoxin [T | 99.37 | |
| d2v1pa1 | 467 | Tryptophan indol-lyase (tryptophanase) {Escherichi | 99.36 | |
| d1wyua1 | 437 | Glycine dehydrogenase (decarboxylating) subunit 1 | 99.36 | |
| d2v1pa1 | 467 | Tryptophan indol-lyase (tryptophanase) {Escherichi | 99.33 | |
| d1e9ma_ | 106 | 2Fe-2S ferredoxin {Rhodobacter capsulatus, ferredo | 99.32 | |
| d1ax4a_ | 465 | Tryptophan indol-lyase (tryptophanase) {Proteus vu | 99.3 | |
| d1ax4a_ | 465 | Tryptophan indol-lyase (tryptophanase) {Proteus vu | 99.29 | |
| d2zgya2 | 163 | Plasmid segregation protein ParM {Escherichia coli | 99.2 | |
| d1l5pa_ | 93 | 2Fe-2S ferredoxin {Trichomonas vaginalis [TaxId: 5 | 99.18 | |
| d1i7ha_ | 109 | Adrenodoxin-like ferredoxin {Escherichia coli [Tax | 99.16 | |
| d2zgya2 | 163 | Plasmid segregation protein ParM {Escherichia coli | 99.16 | |
| d1vefa1 | 387 | Acetylornithine/acetyl-lysine aminotransferase Arg | 99.07 | |
| d1e4ft2 | 191 | Cell division protein FtsA {Thermotoga maritima [T | 99.04 | |
| d1vefa1 | 387 | Acetylornithine/acetyl-lysine aminotransferase Arg | 99.03 | |
| d1wyub1 | 471 | Glycine dehydrogenase subunit 2 (P-protein) {Therm | 99.03 | |
| d1wyub1 | 471 | Glycine dehydrogenase subunit 2 (P-protein) {Therm | 98.99 | |
| d1e4ft2 | 191 | Cell division protein FtsA {Thermotoga maritima [T | 98.98 | |
| d2byla1 | 404 | Ornithine aminotransferase {Human (Homo sapiens) [ | 98.97 | |
| d2byla1 | 404 | Ornithine aminotransferase {Human (Homo sapiens) [ | 98.9 | |
| d1z7da1 | 404 | Ornithine aminotransferase {Plasmodium yoelii yoel | 98.86 | |
| d1sffa_ | 425 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 98.84 | |
| d1sffa_ | 425 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 98.82 | |
| d2fsja1 | 161 | Hypothetical protein Ta0583 {Archaeon Thermoplasma | 98.78 | |
| d1z7da1 | 404 | Ornithine aminotransferase {Plasmodium yoelii yoel | 98.78 | |
| d2fsja1 | 161 | Hypothetical protein Ta0583 {Archaeon Thermoplasma | 98.76 | |
| d2fug33 | 95 | Nadh-quinone oxidoreductase chain 3, Nqo3, N-termi | 98.75 | |
| d2gsaa_ | 427 | Glutamate-1-semialdehyde aminomutase (aminotransfe | 98.75 | |
| d1s0aa_ | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 98.71 | |
| d1zoda1 | 431 | Dialkylglycine decarboxylase {Pseudomonas cepacia | 98.68 | |
| d2gsaa_ | 427 | Glutamate-1-semialdehyde aminomutase (aminotransfe | 98.66 | |
| d1s0aa_ | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 98.64 | |
| d1zoda1 | 431 | Dialkylglycine decarboxylase {Pseudomonas cepacia | 98.57 | |
| d1ohwa_ | 461 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 98.48 | |
| d1ohwa_ | 461 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 98.44 | |
| d1fpoa1 | 76 | HSC20 (HSCB), N-terminal (J) domain {Escherichia c | 98.38 | |
| d1krha3 | 104 | Benzoate dioxygenase reductase, N-terminal domain | 98.23 | |
| d1fpoa2 | 95 | HSC20 (HSCB), C-terminal oligomerisation domain {E | 98.23 | |
| d1fpoa1 | 76 | HSC20 (HSCB), N-terminal (J) domain {Escherichia c | 98.2 | |
| d1fpoa2 | 95 | HSC20 (HSCB), C-terminal oligomerisation domain {E | 98.13 | |
| d1huxa_ | 259 | Hydroxyglutaryl-CoA dehydratase component A {Acida | 98.09 | |
| d1huxa_ | 259 | Hydroxyglutaryl-CoA dehydratase component A {Acida | 98.06 | |
| d1iuea_ | 98 | 2Fe-2S ferredoxin {Malaria parasite (Plasmodium fa | 97.98 | |
| d1jq4a_ | 98 | Methane monooxygenase reductase N-terminal domain | 97.97 | |
| d1doia_ | 128 | 2Fe-2S ferredoxin {Archaeon Haloarcula marismortui | 97.96 | |
| d1a70a_ | 97 | 2Fe-2S ferredoxin {Spinach (Spinacia oleracea) [Ta | 97.92 | |
| d2fug33 | 95 | Nadh-quinone oxidoreductase chain 3, Nqo3, N-termi | 97.9 | |
| d1frda_ | 98 | 2Fe-2S ferredoxin {Cyanobacterium (Anabaena sp.), | 97.89 | |
| d1awda_ | 94 | 2Fe-2S ferredoxin {Chlorella fusca [TaxId: 3073]} | 97.86 | |
| d1frra_ | 95 | 2Fe-2S ferredoxin {Equisetum arvense [TaxId: 3258] | 97.85 | |
| d1czpa_ | 98 | 2Fe-2S ferredoxin {Cyanobacterium (Anabaena sp.), | 97.76 | |
| d2piaa3 | 98 | Phthalate dioxygenase reductase, C-terminal domain | 97.46 | |
| d1nbwa3 | 202 | ATPase domain of the glycerol dehydratase reactiva | 97.2 | |
| d1krha3 | 104 | Benzoate dioxygenase reductase, N-terminal domain | 97.18 | |
| d1nbwa3 | 202 | ATPase domain of the glycerol dehydratase reactiva | 97.14 | |
| d2d0oa3 | 203 | Diol dehydratase-reactivating factor large subunit | 97.07 | |
| d2fxua2 | 225 | Actin {Cow (Bos taurus) [TaxId: 9913]} | 97.0 | |
| d2fxua2 | 225 | Actin {Cow (Bos taurus) [TaxId: 9913]} | 96.99 | |
| d1k8ka2 | 258 | Actin-related protein 3, Arp3 {Cow (Bos taurus) [T | 96.97 | |
| d1jq4a_ | 98 | Methane monooxygenase reductase N-terminal domain | 96.93 | |
| d1k8ka2 | 258 | Actin-related protein 3, Arp3 {Cow (Bos taurus) [T | 96.93 | |
| d2d0oa3 | 203 | Diol dehydratase-reactivating factor large subunit | 96.87 | |
| d1doia_ | 128 | 2Fe-2S ferredoxin {Archaeon Haloarcula marismortui | 96.78 | |
| d1frda_ | 98 | 2Fe-2S ferredoxin {Cyanobacterium (Anabaena sp.), | 96.74 | |
| d1wria_ | 93 | 2Fe-2S ferredoxin {Equisetum arvense [TaxId: 3258] | 96.62 | |
| d1czpa_ | 98 | 2Fe-2S ferredoxin {Cyanobacterium (Anabaena sp.), | 96.45 | |
| d1a70a_ | 97 | 2Fe-2S ferredoxin {Spinach (Spinacia oleracea) [Ta | 96.4 | |
| d1awda_ | 94 | 2Fe-2S ferredoxin {Chlorella fusca [TaxId: 3073]} | 96.29 | |
| d1iuea_ | 98 | 2Fe-2S ferredoxin {Malaria parasite (Plasmodium fa | 96.21 | |
| d1frra_ | 95 | 2Fe-2S ferredoxin {Equisetum arvense [TaxId: 3258] | 96.09 | |
| d1k8kb1 | 190 | Actin-related protein 2, Arp2 {Cow (Bos taurus) [T | 95.72 | |
| d1k8kb1 | 190 | Actin-related protein 2, Arp2 {Cow (Bos taurus) [T | 95.19 | |
| d2piaa3 | 98 | Phthalate dioxygenase reductase, C-terminal domain | 95.12 | |
| d1wjza_ | 94 | CSL-type zinc finger-containing protein 3 (J-domai | 94.75 | |
| d2p2ea1 | 118 | Putative Fe-S biosynthesis protein LSL1730 {Lactob | 92.72 | |
| d1xbla_ | 75 | DnaJ chaperone, N-terminal (J) domain {Escherichia | 92.53 | |
| d2i7na2 | 212 | Pantothenate kinase 1, PANK1 {Human (Homo sapiens) | 92.37 | |
| d1r59o2 | 235 | Glycerol kinase {Enterococcus casseliflavus [TaxId | 92.33 | |
| d1e4ft1 | 193 | Cell division protein FtsA {Thermotoga maritima [T | 92.11 | |
| d1r59o2 | 235 | Glycerol kinase {Enterococcus casseliflavus [TaxId | 91.86 | |
| d2p2ea1 | 118 | Putative Fe-S biosynthesis protein LSL1730 {Lactob | 91.75 | |
| d1nz6a_ | 98 | Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} | 91.66 | |
| d1hdja_ | 77 | HSP40 {Human (Homo sapiens) [TaxId: 9606]} | 91.43 | |
| d1wjza_ | 94 | CSL-type zinc finger-containing protein 3 (J-domai | 91.1 | |
| d2i7na2 | 212 | Pantothenate kinase 1, PANK1 {Human (Homo sapiens) | 90.96 | |
| d2p3ra2 | 247 | Glycerol kinase {Escherichia coli [TaxId: 562]} | 90.83 | |
| d2p3ra2 | 247 | Glycerol kinase {Escherichia coli [TaxId: 562]} | 90.59 | |
| d2fxua1 | 140 | Actin {Cow (Bos taurus) [TaxId: 9913]} | 89.82 | |
| d1xbla_ | 75 | DnaJ chaperone, N-terminal (J) domain {Escherichia | 88.68 | |
| d1k8ka1 | 158 | Actin-related protein 3, Arp3 {Cow (Bos taurus) [T | 88.23 | |
| d1hdja_ | 77 | HSP40 {Human (Homo sapiens) [TaxId: 9606]} | 88.15 | |
| d1nz6a_ | 98 | Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} | 88.01 | |
| d1fafa_ | 79 | Large T antigen, the N-terminal J domain {Murine p | 87.65 | |
| d2fxua1 | 140 | Actin {Cow (Bos taurus) [TaxId: 9913]} | 87.39 | |
| d1e4ft1 | 193 | Cell division protein FtsA {Thermotoga maritima [T | 87.1 | |
| d1wria_ | 93 | 2Fe-2S ferredoxin {Equisetum arvense [TaxId: 3258] | 86.33 | |
| d1k8ka1 | 158 | Actin-related protein 3, Arp3 {Cow (Bos taurus) [T | 84.93 | |
| d3c8ya2 | 126 | Fe-only hydrogenase, N-terminal domain {Clostridiu | 84.46 | |
| d2fsja2 | 164 | Hypothetical protein Ta0583 {Archaeon Thermoplasma | 80.91 | |
| d1sz2a1 | 319 | Glucokinase Glk {Escherichia coli [TaxId: 562]} | 80.89 | |
| d2fsja2 | 164 | Hypothetical protein Ta0583 {Archaeon Thermoplasma | 80.31 |
| >d1kona_ e.39.1.1 (A:) Hypothetical protein YebC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: YebC-like superfamily: YebC-like family: YebC-like domain: Hypothetical protein YebC species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.9e-57 Score=526.24 Aligned_cols=225 Identities=36% Similarity=0.615 Sum_probs=204.4
Q ss_pred cccCcccccccccccchhhHHHHHHHHHHHHHhc-CCCCCCChHHHHHHHHHHHcCCChhHHHHHHHhccCCCCCCCcce
Q psy15216 1193 KAWGLEENSRLSFDAKRGKICTRIMRELRVAINF-GNNPDTNIKLRLAIEKALDANIPKNNIFRAIQKNNSNIKNENINY 1271 (2602)
Q Consensus 1193 ~~~~~~~~srl~~d~~~~~~~~~~~~~i~~a~~~-g~~p~~n~~l~~~~~~a~~~~~p~~~i~~ai~~~~~~~~~~~~~~ 1271 (2602)
++|.+++|.|.+.|++|+|+|+||+|+|++|+|. ||||+.|+|||+||++||++||||||||||||||+|+. ++.+|
T Consensus 3 sKW~nIkh~K~a~D~~k~k~f~k~~k~I~~A~k~GG~DP~~N~~L~~ai~~Ak~~nmPkd~IeraIkk~~g~~--~~~~~ 80 (244)
T d1kona_ 3 SKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPDANPRLRAAVDKALSNNMTRDTLNRAIARGVGGD--DDANM 80 (244)
T ss_dssp CSGGGTSSSTTTTTSCHHHHHHHHHHHHHHHHHC-----CCSTTTHHHHHHHHHTTCCHHHHHHHHSCC--------CCC
T ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHHHHHHHHcCCchHHHHHHHHhccCCC--CCCce
Confidence 4899999999999999999999999999999975 57999999999999999999999999999999999875 36789
Q ss_pred EEEEEEEeccCCcEEEEEEecCCchhhHHHHHHhhhccCccccCCcceeEeeceeEEEEECCCCChhHHHHHHHhcCCce
Q psy15216 1272 IEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNKNGGNLSKEGSVLFMFKHCGQLLFLPNTKKNTLLDLALEKGAED 1351 (2602)
Q Consensus 1272 ~~~~ye~~~p~g~~~~v~~~tdn~~r~~~~~r~~~~k~~g~~~~~g~v~~~f~~~g~~~~~~~~~~~~~~~~~~~~g~~d 1351 (2602)
++++|||||||||+|||||||||+|||+++||++|+|+||+||++|||+|||+|||+|.+++. ++|++||.|||+||+|
T Consensus 81 ~e~~yEg~gp~gvaiiVe~lTDN~nRt~~~vR~~f~K~gG~lg~~GsV~~~F~~kG~i~~~~~-~~d~l~e~aie~gAeD 159 (244)
T d1kona_ 81 ETIIYEGYGPGGTAIMIECLSDNRNRTVAEVRHAFSKCGGNLGTDGSVAYLFSKKGVISFEKG-DEDTIMEAALEAGAED 159 (244)
T ss_dssp EEEEEEEEETTTEEEEEEEEESCHHHHHHHHHHHHHTTTCEECCTTSSGGGEEEEEEEEESSS-CHHHHHHHHHHHTCSE
T ss_pred EEEEEEEEcCCccEEEEEEecCcHHHHHHHHHHHHHHcCCeeCCCccHhhhhheeceeccCCC-CHHHHHHHHHHhccch
Confidence 999999999999999999999999999999999999999999999999999999999999864 8999999999999999
Q ss_pred eeeccCceEEEEeCcccHHHHHHHHHhcCCCccccceeeeeceeeeccCCCCCCCHHHHHHHHHHHhhc
Q psy15216 1352 FLIDKDNKITIITSPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDATTPIDPRVVDKMIPYLRVQ 1420 (2602)
Q Consensus 1352 ~~~~~~~~~~~~~~~~~~~~v~~aL~~~g~~~~~~ei~~iP~~~v~L~~~~~~~~~~v~eal~~~l~~~ 1420 (2602)
+++.+++.++|+|+|++|..|+++|+++|+.+.++++.|+|.+++.++.........++++|++..+.+
T Consensus 160 v~~~d~~~~~i~~~~~dl~~v~~~Le~~g~~~~~aei~~~P~~~v~l~~e~~~k~~kLid~Led~DDVq 228 (244)
T d1kona_ 160 VVTYDDGAIDVYTAWEEMGKVRDALEAAGLKADSAEVSMIPSTKADMDAETAPKLMRLIDMLEDCDDVQ 228 (244)
T ss_dssp EEECTTSCEEEEEEGGGHHHHHHHHHHTTCCCSEEEEEEEESSCCCCCTTTSHHHHHHHHHHHHSSSEE
T ss_pred hcccCCCceEEEecchhHHHHHHHHHhcCCCceeeeEEEEeCCccccCHHHHHHHHHHHHHHhcccCcc
Confidence 977777889999999999999999999999999999999999999998877777778888888877664
|
| >d1lfpa_ e.39.1.1 (A:) Hypothetical protein aq1575 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: YebC-like superfamily: YebC-like family: YebC-like domain: Hypothetical protein aq1575 species: Aquifex aeolicus [TaxId: 63363]
Probab=100.00 E-value=5.3e-56 Score=518.19 Aligned_cols=224 Identities=34% Similarity=0.552 Sum_probs=205.2
Q ss_pred cccCcccccccccccchhhHHHHHHHHHHHHHh-cCCCCCCChHHHHHHHHHHHcCCChhHHHHHHHhccCCCCCCCcce
Q psy15216 1193 KAWGLEENSRLSFDAKRGKICTRIMRELRVAIN-FGNNPDTNIKLRLAIEKALDANIPKNNIFRAIQKNNSNIKNENINY 1271 (2602)
Q Consensus 1193 ~~~~~~~~srl~~d~~~~~~~~~~~~~i~~a~~-~g~~p~~n~~l~~~~~~a~~~~~p~~~i~~ai~~~~~~~~~~~~~~ 1271 (2602)
++|.+++|.|.+.|++|+|+|+||+|+|++|+| |||||+.||+||+||++||++||||++||||||||+|.. ++.+|
T Consensus 1 SkW~nIkh~K~~~D~~r~k~f~k~~r~I~~A~k~GG~DP~~N~~L~~ai~~Ak~~nmPk~~Ie~AIkk~~g~~--~~~~~ 78 (243)
T d1lfpa_ 1 SHWAQIKHKKAKVDAQRGKLFSKLIREIIVATRLGGPNPEFNPRLRTAIEQAKKANMPWENIERAIKKGAGEL--EGEQF 78 (243)
T ss_dssp CCSCCSSSSSSCTTTSHHHHHHHHHHHHHHHHHHHCSCGGGCHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCS--SSCCC
T ss_pred CCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHcCCcHHHHHHHHHhccccc--ccccc
Confidence 589999999999999999999999999999996 568999999999999999999999999999999999975 35789
Q ss_pred EEEEEEEeccCCcEEEEEEecCCchhhHHHHHHhhhccCccccCCcceeEeeceeEEEEECC-CCChhHHHHHHHhcCCc
Q psy15216 1272 IEVRYEGYSVNGAAIIVDCITNNRMRTVSNIRNIFNKNGGNLSKEGSVLFMFKHCGQLLFLP-NTKKNTLLDLALEKGAE 1350 (2602)
Q Consensus 1272 ~~~~ye~~~p~g~~~~v~~~tdn~~r~~~~~r~~~~k~~g~~~~~g~v~~~f~~~g~~~~~~-~~~~~~~~~~~~~~g~~ 1350 (2602)
++++|||||||||||||||||||+|||+++||++|+|+||+||++|||+|||+|||+|.++. ..++|++++.++|+|||
T Consensus 79 ~~~~yEg~gP~GvaiiVe~lTDN~nRt~~~vr~~f~K~gG~l~~~GsV~~~F~~kG~i~~~~~~~~ed~l~~~~ie~gae 158 (243)
T d1lfpa_ 79 EEVIYEGYAPGGVAVMVLATTDNRNRTTSEVRHVFTKHGGNLGASGCVSYLFERKGYIEVPAKEVSEEELLEKAIEVGAE 158 (243)
T ss_dssp EEEEEEEEETTTEEEEEEEEESCHHHHHHHHHHHHHHTTCEECCTTSSGGGEEEEEEEEEEGGGSCHHHHHHHHHHHTCS
T ss_pred eEEEEEEEecCCcEEEEEEeccchhhhHHHHHHHHHhcCCccccccceeeeecccceeccccCccchHHHHHHHhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999976 46899999999999999
Q ss_pred eeeeccCceEEEEeCcccHHHHHHHHHhcCCCccccceeeeeceeeeccCCC-CCCCHHHHHHHHHHHhh
Q psy15216 1351 DFLIDKDNKITIITSPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDAT-TPIDPRVVDKMIPYLRV 1419 (2602)
Q Consensus 1351 d~~~~~~~~~~~~~~~~~~~~v~~aL~~~g~~~~~~ei~~iP~~~v~L~~~~-~~~~~~v~eal~~~l~~ 1419 (2602)
|+ +++++.++|+|+|++|.+++++|+++|+++.++++.|+|++++.+++.. ......++++|.+..+.
T Consensus 159 d~-e~~~~~~~i~~~~~~l~~v~~~Le~~g~~i~~sei~~~P~~~v~l~dee~~~kv~kLid~Led~DDV 227 (243)
T d1lfpa_ 159 DV-QPGEEVHIIYTVPEELYEVKENLEKLGVPIEKAQITWKPISTVQINDEETAQKVIKLLNALEELDDV 227 (243)
T ss_dssp EE-ECCSSEEEEEECGGGHHHHHHHHHTTTCCCSEEEEEEEESSCEECCCHHHHHHHHHHHHHHHTSTTE
T ss_pred cc-cccccccceeccHHHHHHHHHHHHhcCCChhhcceeEecCCceecCCHHHHHHHHHHHHHhhcccCc
Confidence 99 4667789999999999999999999999999999999999999885433 34455666666665554
|
| >d1mw7a_ e.39.1.1 (A:) Hypothetical protein HP0162 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: YebC-like superfamily: YebC-like family: YebC-like domain: Hypothetical protein HP0162 species: Helicobacter pylori [TaxId: 210]
Probab=100.00 E-value=1.1e-53 Score=489.08 Aligned_cols=204 Identities=28% Similarity=0.430 Sum_probs=181.5
Q ss_pred hHHHHHHHHHHHHHhc-CCCCCCChHHHHHHHHHHHcCCChhHHHHHHHhccCCCCCCCcceEEEEEEEeccCCcEEEEE
Q psy15216 1211 KICTRIMRELRVAINF-GNNPDTNIKLRLAIEKALDANIPKNNIFRAIQKNNSNIKNENINYIEVRYEGYSVNGAAIIVD 1289 (2602)
Q Consensus 1211 ~~~~~~~~~i~~a~~~-g~~p~~n~~l~~~~~~a~~~~~p~~~i~~ai~~~~~~~~~~~~~~~~~~ye~~~p~g~~~~v~ 1289 (2602)
|+|+||+|||++|+|. ||||++|||||+||++||++|||||+||||||||+|+ +.+|++++||||||||||||||
T Consensus 1 k~f~kl~reI~vAak~GG~Dp~~N~~L~~ai~~Ak~~nmPkd~IerAIkk~~~~----~~~~~e~~YEg~gp~gvaiiVe 76 (220)
T d1mw7a_ 1 KVFPKLAKAITLAAKDGGSEPDTNAKLRTAILNAKAQNMPKDNIDAAIKRASSK----EGNLSEITYEGKANFGVLIIME 76 (220)
T ss_dssp CCHHHHHHHHHHHHHTTCSCGGGCHHHHHHHHHHHHHTCCHHHHHHHHHHTTST----TCCCEEEEEEEEETTTEEEEEE
T ss_pred ChhHHHHHHHHHHHHcCCCCcccCHHHHHHHHHHHHhCCCccHHHHHHHhhccc----CCCceEEEEEEecCCceEEEEE
Confidence 7899999999999976 5799999999999999999999999999999999876 3479999999999999999999
Q ss_pred EecCCchhhHHHHHHhhhcc-CccccCCcceeEeeceeEEEEECC------CCChhHHHHHHHhcCCceeeeccCceEEE
Q psy15216 1290 CITNNRMRTVSNIRNIFNKN-GGNLSKEGSVLFMFKHCGQLLFLP------NTKKNTLLDLALEKGAEDFLIDKDNKITI 1362 (2602)
Q Consensus 1290 ~~tdn~~r~~~~~r~~~~k~-~g~~~~~g~v~~~f~~~g~~~~~~------~~~~~~~~~~~~~~g~~d~~~~~~~~~~~ 1362 (2602)
|||||+|||+++||++|+|+ ||+||++|||+|||+|||+|.+.+ ..++|++++.|||+||||++ ++|+.++|
T Consensus 77 ~lTDN~nRt~~~vr~~f~K~~Gg~lg~~GsV~~~F~~kG~i~~~~~~~~~~~~~~d~~~~~aie~GaeDve-~~ed~~~i 155 (220)
T d1mw7a_ 77 CMTDNPTRTIANLKSYFNKTQGASIVPNGSLEFMFNRKSVFECLKNEVENLKLSLEDLEFALIDYGLEELE-EVEDKIII 155 (220)
T ss_dssp EEESCHHHHHHHHHHHHTTSTTCEEECTTTTTTSEEEEEEEEEEHHHHHHTTCCHHHHHHHHGGGTEEEEE-EETTEEEE
T ss_pred EecCchhhHHHHHHHHHhhcccccccCCCcchhhheeeeeeeecCCccchhhcchhhhhHHhhhccccccc-ccCCccee
Confidence 99999999999999999996 889999999999999999999865 24678999999999999995 45677999
Q ss_pred EeCcccHHHHHHHHHhcCCCccccceeeeeceeeeccCCCCCCCHHHHHHHHHHHhh
Q psy15216 1363 ITSPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDATTPIDPRVVDKMIPYLRV 1419 (2602)
Q Consensus 1363 ~~~~~~~~~v~~aL~~~g~~~~~~ei~~iP~~~v~L~~~~~~~~~~v~eal~~~l~~ 1419 (2602)
+|+|++|..++++|++.|+.+.++++.|+|.+++.++........+++++|.+..+.
T Consensus 156 ~t~~~~~~~v~~aL~~~~~~~~~aei~~~p~~~v~l~~e~~~~~~kLid~LEd~DDV 212 (220)
T d1mw7a_ 156 RGDYNSFKLLNEGFESLKLPILKASLQRIATTPIELNDEQMELTEKLLDRIEDDDDV 212 (220)
T ss_dssp EEEGGGHHHHHHHHHHTTCCCSEEEEEEEESSCBCCCHHHHHHHHHHHHHHHTSTTE
T ss_pred ecchhhhhhhhHHHHhhccccceeeEEEecCCceecCHHHHHHHHHHHHHHhcccCc
Confidence 999999999999999999999999999999998877544444444555555544443
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.6e-39 Score=418.94 Aligned_cols=368 Identities=67% Similarity=1.114 Sum_probs=330.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhh--hcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhc
Q psy15216 1 MDYSATTPIDPRVVDKMIPYLRV--QFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGA 78 (2602)
Q Consensus 1 Ld~a~~~~~p~~v~~a~~~~l~~--~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l 78 (2602)
||+++++|.++.|+++|.+++.. .++||++..|..++.....++++|+.+|+++|+++++|+||+|+|++++.++.++
T Consensus 6 lD~aa~~p~~~~v~ea~~~~~~~~~~~~np~~~~~~~~~~~~~~~~~~R~~iA~~lg~~~~~I~~~~~~t~~l~~~~~~~ 85 (391)
T d1p3wa_ 6 LDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSGATESDNLAIKGA 85 (391)
T ss_dssp CBTTTCCCCCHHHHHHHHTTTSTTSCCCCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHH
T ss_pred eeCccccCCCHHHHHHHHHHHHhccccCCCchhhhHHHHHHHHHHHHHHHHHHHHcCCCCCcEEEECCHHHHHHHHHhhh
Confidence 79999999999999999998853 5678988788888888899999999999999999999999999999999999987
Q ss_pred ccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHH
Q psy15216 79 AHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEI 158 (2602)
Q Consensus 79 ~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I 158 (2602)
....+++||+|++++++|+++..+++.++..|++++.++.+.++.+|+++++++++++|++|++++++|+||.++|+++|
T Consensus 86 ~~~~~~~gd~Vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~~~~~i~~~T~lv~is~~~n~tG~~~~~~~I 165 (391)
T d1p3wa_ 86 ANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAI 165 (391)
T ss_dssp HHHHGGGCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCTTSCCCHHHHHHHCCTTEEEEECCSBCTTTCCBCCHHHH
T ss_pred hhhhcCCCCEEEEeccccchHHHHHHHHHHcCCEEEEeCCCCCCeEcHHHHHHhCCCCcEEEEEECCCCCCeeECCHHHH
Confidence 64456899999999999999999998888889999999999889999999999999999999999999999999999999
Q ss_pred HHHHHhcCCEEEEecccccccccccCCCCCccEEEeccccccCCCCcEEEEEecCCCCcccceecCCCccccccccCcch
Q psy15216 159 GELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLAT 238 (2602)
Q Consensus 159 ~~la~~~g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K~~Gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~ 238 (2602)
+++||+||+++++|++|++|..++|+..+++|++++|+||++||+|+|+++++++......|...||..+.++..++.+.
T Consensus 166 ~~~~~~~~~~~ivD~~~~~g~~~~d~~~~~~D~~~~s~~k~~g~~g~g~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~ 245 (391)
T d1p3wa_ 166 GEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKIYGPKGIGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPV 245 (391)
T ss_dssp HHHHHHHTCEEEEECTTTBTTBCCCTTTSCCSEEEEESTTTTSCSSCEEEEECBTTBCCCCCSSCSSCTTTTTSCSCCCH
T ss_pred HHHhccCCcEEEEeeccccCCccccchhccccccccccccccCCCceEEEEEecchhcccCCcccCCccccCcccCcchh
Confidence 99999999999999999999999999999999999999999999999999999999999999888888888888999999
Q ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcccChhHHHHHhCCeEEccc
Q psy15216 239 HQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIKDIAVSSG 318 (2602)
Q Consensus 239 ~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~gI~v~~g 318 (2602)
....++..++...........++..++..++.+.|.. +++..+......+.+.+..+.++..+...+...|+++.++.|
T Consensus 246 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~v~~G 324 (391)
T d1p3wa_ 246 HQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIKD-IEEVYLNGDLEHGAPNILNVSFNYVEGESLIMALKDLAVSSG 324 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT-STTEEECSCTTTSCTTEEEEEETTSCHHHHHHHTTTEECBCC
T ss_pred hhhhhhhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHh-hcCeeecccccccCceEEEEEeCCCChHHHHHHhCCCEEEcc
Confidence 9998887777765556667778888999999999987 677777766666677888888998899999999999999999
Q ss_pred ccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 319 SACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 319 ~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
.+|.++...+++++..+|+++....++||||+|+|||.+||++++++|++.
T Consensus 325 ~~c~~~~~~~~~~l~~~g~~~~~~~g~iRiS~~~~nt~edid~l~~~l~~~ 375 (391)
T d1p3wa_ 325 SACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKS 375 (391)
T ss_dssp CC------CCCHHHHHHTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred ccccCCccchhHHHHHcCCCccccCCEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 999988888889999999987777789999999999999999999999873
|
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.7e-38 Score=409.32 Aligned_cols=355 Identities=23% Similarity=0.347 Sum_probs=315.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCC-CCcEEEeCCHHHHHHHHHHhcc
Q psy15216 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYAD-PREIIWTSGATESNNLAIKGAA 79 (2602)
Q Consensus 1 Ld~a~~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~-~~~Iv~t~g~T~al~~~~~~l~ 79 (2602)
|||++++|+|+.|++++.+++...++||+++.|..+......++++|+.+|+++|+. +++|+|++|+|++++.++.++.
T Consensus 26 ld~a~~~~~p~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~R~~ia~~l~~~~~~~i~~~~~~T~~~~~~~~~~~ 105 (405)
T d1jf9a_ 26 LDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVANSWG 105 (405)
T ss_dssp CCTTTCCCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHHH
T ss_pred EeCccccCCCHHHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHHHHHHHHHcCCCCcccccccCcHHHHHHHHHhccc
Confidence 799999999999999999999999999988788888888889999999999999974 5799999999999999998865
Q ss_pred cccccCCCEEEEcCCCCcccHHHHHHH-HhCCcEEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHH
Q psy15216 80 HFYKKRGKHIITVQTEHKSVLDSIRKL-ENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEI 158 (2602)
Q Consensus 80 ~~~~~~gd~Vlv~~~~~~s~~~~~~~~-~~~G~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I 158 (2602)
...+.+||+|++++.+|+++..+|+.+ ++.|++++++|+++++.+|++.++++++++|++|++++++|.||.++|+++|
T Consensus 106 ~~~~~~g~~il~~~~e~~s~~~~~~~~a~~~g~~v~~~~~~~~g~~~~~~~~~~i~~~t~lv~~~~v~~~tG~~~pi~~i 185 (405)
T d1jf9a_ 106 NSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFDEKTRLLAITHVSNVLGTENPLAEM 185 (405)
T ss_dssp HHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCTTSCBCGGGHHHHCCTTEEEEEEESBCTTTCCBCCHHHH
T ss_pred ccccCCCCEEEEEeCcccchHHHHHHHHHHcCcEEEEECCCCCCcCCHHHHHHhccCCcEEEEEecCCCcccccCchHHh
Confidence 555789999999999999999999877 6679999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCEEEEecccccccccccCCCCCccEEEeccccccCCCCcEEEEEecCCCCcccceecCCCc-----------
Q psy15216 159 GELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGH----------- 227 (2602)
Q Consensus 159 ~~la~~~g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K~~Gp~G~G~l~~~~~~~~~l~~~~~g~~~----------- 227 (2602)
+++||++|+++++|++|++|..++|+..+++|++++|+|||+||+|+|+++++++..+.+.|...++..
T Consensus 186 ~~~~~~~g~~~~vD~~q~~g~~~id~~~~~~D~~~~s~hK~~Gp~G~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (405)
T d1jf9a_ 186 ITLAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKEALLQEMPPWEGGGSMIATVSLSEGTT 265 (405)
T ss_dssp HHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGTTSCSSCEEEEECHHHHTTCCCSSCSSSSEEECCTTTCCE
T ss_pred hhHHHHcCCeeecccceeccccccchhhcCCceeeccccccccCCCceeeeechhhhcccCcccccccccCccccccccc
Confidence 999999999999999999999999999999999999999999999999999999887777765544322
Q ss_pred ----cccccccCcchhHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcccC
Q psy15216 228 ----EYGLRSGTLATHQIVGMGEAFRLAR-IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIE 302 (2602)
Q Consensus 228 ----~~~~~~gt~~~~~~~al~~al~~~~-~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~~ 302 (2602)
+.+++.||+++..++++.+|+++.. .+++.+.++...+.+++.+.+.. .+...+..+.. +. .++.|.+++.+
T Consensus 266 ~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~L~~~~~~~l~~-~~~~~~~~~~~-r~-~ivsf~~~~~~ 342 (405)
T d1jf9a_ 266 WTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLES-VPDLTLYGPQN-RL-GVIAFNLGKHH 342 (405)
T ss_dssp ECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT-STTEEEESCTT-CC-SEEEEEETTCC
T ss_pred cccchhhhcCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhhhhc-CCcccccCCcC-cC-cEEEEEcCCCC
Confidence 4567889999999999999999655 46899999999999999999987 67777776543 33 45667788778
Q ss_pred hhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 303 GESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 303 ~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
+.++...| +||.++.|++|+. ..+..++.+ ++||||+|+|||.+||++++++|++.
T Consensus 343 ~~~~~~~L~~~gI~v~~G~~c~~------~~~~~~~~~-----g~iRiS~~~ynt~eDid~l~~~l~~i 400 (405)
T d1jf9a_ 343 AYDVGSFLDNYGIAVRTGHHCAM------PLMAYYNVP-----AMCRASLAMYNTHEEVDRLVTGLQRI 400 (405)
T ss_dssp HHHHHHHHHHTTEECEEECTTCH------HHHHHTTCS-----CEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCcEEEccchhhh------hHHHhcCCC-----CEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 87777766 8999999999975 356667764 89999999999999999999999974
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=8.6e-38 Score=404.50 Aligned_cols=370 Identities=66% Similarity=1.094 Sum_probs=330.5
Q ss_pred eeeccC-CCCCCCHHHHHHHHHHHhh--ccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHH
Q psy15216 1395 NIVFKD-ATTPIDPRVVDKMIPYLRV--QFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAI 1471 (2602)
Q Consensus 1395 ~v~L~~-~~~~~~~~v~eal~~~l~~--~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al 1471 (2602)
+||||+ ++++.++.+++++.+++.. .++||++..|..++...+.++++|+.+++++|+++++|+||+|+|++++.++
T Consensus 3 ~iYlD~aa~~p~~~~v~ea~~~~~~~~~~~~np~~~~~~~~~~~~~~~~~~R~~iA~~lg~~~~~I~~~~~~t~~l~~~~ 82 (391)
T d1p3wa_ 3 PIYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSGATESDNLAI 82 (391)
T ss_dssp SEECBTTTCCCCCHHHHHHHHTTTSTTSCCCCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHH
T ss_pred eEEeeCccccCCCHHHHHHHHHHHHhccccCCCchhhhHHHHHHHHHHHHHHHHHHHHcCCCCCcEEEECCHHHHHHHHH
Confidence 479974 6679999999999998864 5789998888888888899999999999999999999999999999999999
Q ss_pred HhhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccCCceEEEEeccccccccccCh
Q psy15216 1472 KGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPI 1551 (2602)
Q Consensus 1472 ~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l 1551 (2602)
.++....+++||+|++++++|+++...++.++..|++++.++.+.++.+|+++++++++++|++|++++++|+||.++|+
T Consensus 83 ~~~~~~~~~~gd~Vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~~~~~i~~~T~lv~is~~~n~tG~~~~~ 162 (391)
T d1p3wa_ 83 KGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDI 162 (391)
T ss_dssp HHHHHHHGGGCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCTTSCCCHHHHHHHCCTTEEEEECCSBCTTTCCBCCH
T ss_pred hhhhhhhcCCCCEEEEeccccchHHHHHHHHHHcCCEEEEeCCCCCCeEcHHHHHHhCCCCcEEEEEECCCCCCeeECCH
Confidence 98765556899999999999999999998888889999999999888999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCEEEEecccccCcccccCCCCCccEEEEccccccCCCceEEEEEecCCCCccccccccCCccccCCCCC
Q psy15216 1552 LEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGT 1631 (2602)
Q Consensus 1552 ~~I~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K~~gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt 1631 (2602)
++|.++||+||+++++|++|++|..++|+..+++|++++|+||++||+|+|+++++++......+...||..+.++..++
T Consensus 163 ~~I~~~~~~~~~~~ivD~~~~~g~~~~d~~~~~~D~~~~s~~k~~g~~g~g~~~~~~~~~~~~~~~~~gg~~~~~~~~~~ 242 (391)
T d1p3wa_ 163 AAIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKIYGPKGIGALYVRRKPRVRIEAQMHGGGHERGMRSGT 242 (391)
T ss_dssp HHHHHHHHHHTCEEEEECTTTBTTBCCCTTTSCCSEEEEESTTTTSCSSCEEEEECBTTBCCCCCSSCSSCTTTTTSCSC
T ss_pred HHHHHHhccCCcEEEEeeccccCCccccchhccccccccccccccCCCceEEEEEecchhcccCCcccCCccccCcccCc
Confidence 99999999999999999999999999999999999999999999999999999999999889999888888888888999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecCCcHHHHHhcCCEEE
Q psy15216 1632 LATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIKDIAV 1711 (2602)
Q Consensus 1632 ~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~L~gI~v 1711 (2602)
.+.+...++..++...........++...+..++.++|.. +++..+........+....+.++......+...|.++.+
T Consensus 243 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~v 321 (391)
T d1p3wa_ 243 LPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIKD-IEEVYLNGDLEHGAPNILNVSFNYVEGESLIMALKDLAV 321 (391)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT-STTEEECSCTTTSCTTEEEEEETTSCHHHHHHHTTTEEC
T ss_pred chhhhhhhhhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHh-hcCeeecccccccCceEEEEEeCCCChHHHHHHhCCCEE
Confidence 9999999888888765556667778888999999999987 778887766666678888888888888888889999999
Q ss_pred ccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1712 SSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1712 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
+.|.+|......+++++..+|+.+....++||+|++.|||.+||++++++|++.
T Consensus 322 ~~G~~c~~~~~~~~~~l~~~g~~~~~~~g~iRiS~~~~nt~edid~l~~~l~~~ 375 (391)
T d1p3wa_ 322 SSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKS 375 (391)
T ss_dssp BCCCC------CCCHHHHHHTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred EccccccCCccchhHHHHHcCCCccccCCEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 999999887777788889999987777789999999999999999999999984
|
| >d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Probable cysteine desulfurase SufS species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=100.00 E-value=1.9e-37 Score=401.76 Aligned_cols=357 Identities=25% Similarity=0.366 Sum_probs=314.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCC-CCcEEEeCCHHHHHHHHHHhcc
Q psy15216 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYAD-PREIIWTSGATESNNLAIKGAA 79 (2602)
Q Consensus 1 Ld~a~~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~-~~~Iv~t~g~T~al~~~~~~l~ 79 (2602)
|||++++|+|+.|++++.+++...++||+++.|..+......++++|+.+|+++|++ ++.+++++|+|+++++++.++.
T Consensus 26 ld~a~~~~~p~~v~~~~~~~~~~~~~n~~s~~~~~~~~~~~~~e~aR~~ia~llga~~~~~i~~~~~tt~~~n~~~~~~~ 105 (408)
T d1t3ia_ 26 LDNAATSQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNATEAINLVAYSWG 105 (408)
T ss_dssp CBTTTCCCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTH
T ss_pred eeCccccCCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCcccEEeecchHHHHHHHHhhcc
Confidence 799999999999999999999999999988788888888899999999999999996 5779999999999999998865
Q ss_pred cccccCCCEEEEcCCCCcccHHHHHHH-HhCCcEEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHH
Q psy15216 80 HFYKKRGKHIITVQTEHKSVLDSIRKL-ENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEI 158 (2602)
Q Consensus 80 ~~~~~~gd~Vlv~~~~~~s~~~~~~~~-~~~G~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I 158 (2602)
...+++|++|++++.+|+++..+|+.+ ++.|++++.++.+.++..+.+.++++++++|++|++++++|.||.+.|+++|
T Consensus 106 ~~~~~~g~~il~s~~e~~s~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~l~~~~~~~t~lv~i~~~~~~tG~~~p~~~i 185 (408)
T d1t3ia_ 106 MNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQESFDLEHFKTLLSEKTKLVTVVHISNTLGCVNPAEEI 185 (408)
T ss_dssp HHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCTTSSBCHHHHHHHCCTTEEEEEEESBCTTTCBBCCHHHH
T ss_pred ccccCCCCEEEeecccchhhhhhhhhhhhccCceEeeeeccccccccHHHhhhccCCCceEEEEecccccccccCcHHHH
Confidence 445689999999999999999999765 6679999999998899999999999999999999999999999999999999
Q ss_pred HHHHHhcCCEEEEecccccccccccCCCCCccEEEeccccccCCCCcEEEEEecCCCCcccceecCCCc-----------
Q psy15216 159 GELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGH----------- 227 (2602)
Q Consensus 159 ~~la~~~g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K~~Gp~G~G~l~~~~~~~~~l~~~~~g~~~----------- 227 (2602)
.++||++|+++++|++|++|..++|+..+++|++++|+||++||+|+|+++++++....++|...||..
T Consensus 186 ~~~~~~~g~~~ivDa~q~~g~~~id~~~~~~D~~~~s~hK~~gp~G~g~l~v~~~~~~~~~p~~~g~~~~~~~~~~~~~~ 265 (408)
T d1t3ia_ 186 AQLAHQAGAKVLVDACQSAPHYPLDVQLIDCDWLVASGHKMCAPTGIGFLYGKEEILEAMPPFFGGGEMIAEVFFDHFTT 265 (408)
T ss_dssp HHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGTTSCTTCEEEEECHHHHHHSCCCSCSTTSEEEECSSCEEE
T ss_pred hhhhhccCceeeeccceecccccccccccCCceEEeccccccCCCCccccccchhhhhcCCceecCCccccccccccccc
Confidence 999999999999999999999999999999999999999999999999999999877777766655432
Q ss_pred ---cccccccCcchhHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCC--CCCceEEEEEccc
Q psy15216 228 ---EYGLRSGTLATHQIVGMGEAFRLAR-IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNN--RIPHNLNISFNFI 301 (2602)
Q Consensus 228 ---~~~~~~gt~~~~~~~al~~al~~~~-~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~--~~~~~~~~~~~~~ 301 (2602)
+.+++.||++++.++++..|+++.. .+++++.++...+.+++.+.+.+ .+++.++++... ....++.|.+++.
T Consensus 266 ~~~~~r~e~Gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~~~~~~~iv~f~~~~~ 344 (408)
T d1t3ia_ 266 GELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQ-IPQLRLYGPNPKHGDRAALASFNVAGL 344 (408)
T ss_dssp CCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHT-CTTEEEESCCGGGSCBCSEEEEEETTB
T ss_pred CCchhhhcCCcHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhHHhhhhcc-CccccccCCCccccCcceEEEEEeCCC
Confidence 3568899999999999999999655 57899999999999999999987 789998875433 2345677778888
Q ss_pred ChhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 302 EGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 302 ~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
++.+++..| +||.++.|++|+.+ .+..++.. ++||||+|+|||.+|||+++++|++.
T Consensus 345 ~~~~v~~~L~~~gI~v~~G~~c~~~------~~~~~~~~-----g~vRiS~~~ynt~~did~li~~L~~~ 403 (408)
T d1t3ia_ 345 HASDVATMVDQDGIAIRSGHHCTQP------LHRLFDAS-----GSARASLYFYNTKEEIDLFLQSLQAT 403 (408)
T ss_dssp CHHHHHHHHHTTTEECBCSCTTCHH------HHHHTTCC-----CCEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhhCCcEEecCcccccH------HHHhhcCC-----ccEEEECCCCCCHHHHHHHHHHHHHH
Confidence 888888777 89999999999753 33444443 78999999999999999999999963
|
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.2e-36 Score=393.66 Aligned_cols=358 Identities=22% Similarity=0.336 Sum_probs=312.3
Q ss_pred eeeeccC-CCCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCC-CCCcEEEeCCHHHHHHHHH
Q psy15216 1394 TNIVFKD-ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA-DPREIIWTSGATESNNLAI 1471 (2602)
Q Consensus 1394 ~~v~L~~-~~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~-~~~~iv~t~gaT~al~~al 1471 (2602)
..+|||+ ++++.|..+++++.+++.+.++||+++.|..+....+.++++|+.+++++|+ ++++++|++|+|+|++.++
T Consensus 22 ~~iYld~a~~~~~p~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~R~~ia~~l~~~~~~~i~~~~~~T~~~~~~~ 101 (405)
T d1jf9a_ 22 PLAYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVA 101 (405)
T ss_dssp ECEECCTTTCCCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHH
T ss_pred CeEEEeCccccCCCHHHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHHHHHHHHHcCCCCcccccccCcHHHHHHHHH
Confidence 4579985 5578999999999999999999999878888888889999999999999997 4578999999999999999
Q ss_pred HhhhhhhccCCCEEEEcCCCCcchHHHHHHH-HhCCcEEEEeccCCCCCcChhHHHhhccCCceEEEEeccccccccccC
Q psy15216 1472 KGAAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP 1550 (2602)
Q Consensus 1472 ~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~-~~~G~~v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~ 1550 (2602)
.++....+.+||+|++++.+|++...+|+.+ ++.|++++++|+++++.+|++.++++++++|++|+++|++|.||.++|
T Consensus 102 ~~~~~~~~~~g~~il~~~~e~~s~~~~~~~~a~~~g~~v~~~~~~~~g~~~~~~~~~~i~~~t~lv~~~~v~~~tG~~~p 181 (405)
T d1jf9a_ 102 NSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFDEKTRLLAITHVSNVLGTENP 181 (405)
T ss_dssp HHHHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCTTSCBCGGGHHHHCCTTEEEEEEESBCTTTCCBCC
T ss_pred hcccccccCCCCEEEEEeCcccchHHHHHHHHHHcCcEEEEECCCCCCcCCHHHHHHhccCCcEEEEEecCCCcccccCc
Confidence 8865455789999999999999999999877 556999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhcCCEEEEecccccCcccccCCCCCccEEEEccccccCCCceEEEEEecCCCCccccccccCC--------
Q psy15216 1551 ILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGG-------- 1622 (2602)
Q Consensus 1551 l~~I~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K~~gp~G~G~l~~~~~~~~~l~~~~~g~~-------- 1622 (2602)
+++|.++||++|+++++|++|++|..++++.++++|++++|+||++||+|+|+++++++.++.+.|...++.
T Consensus 182 i~~i~~~~~~~g~~~~vD~~q~~g~~~id~~~~~~D~~~~s~hK~~Gp~G~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~ 261 (405)
T d1jf9a_ 182 LAEMITLAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKEALLQEMPPWEGGGSMIATVSLS 261 (405)
T ss_dssp HHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGTTSCSSCEEEEECHHHHTTCCCSSCSSSSEEECCTT
T ss_pred hHHhhhHHHHcCCeeecccceeccccccchhhcCCceeeccccccccCCCceeeeechhhhcccCcccccccccCccccc
Confidence 999999999999999999999999999999999999999999999999999999999987776666443332
Q ss_pred -------ccccCCCCCcchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEE
Q psy15216 1623 -------HEYGLRSGTLATHQIVGMGEAFRLAR-IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISF 1694 (2602)
Q Consensus 1623 -------~~~~~~~gt~~~~~~~al~~aL~~~~-~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~ 1694 (2602)
.+.+++.||+++..++++..|+++.. .+++.+.++...+.+++.+.+.. .+.+.+.++.. + .....|.+
T Consensus 262 ~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~L~~~~~~~l~~-~~~~~~~~~~~-r-~~ivsf~~ 338 (405)
T d1jf9a_ 262 EGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLES-VPDLTLYGPQN-R-LGVIAFNL 338 (405)
T ss_dssp TCCEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT-STTEEEESCTT-C-CSEEEEEE
T ss_pred cccccccchhhhcCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhhhhc-CCcccccCCcC-c-CcEEEEEc
Confidence 24567889999999999999999655 47899999999999999999987 77887776543 3 34556777
Q ss_pred ecCCcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1695 NFIEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1695 ~~~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
++.+...+...| +||.++.|++|..+ ....++.+ ++||+|+++|||.+|||+++++|++.
T Consensus 339 ~~~~~~~~~~~L~~~gI~v~~G~~c~~~------~~~~~~~~-----g~iRiS~~~ynt~eDid~l~~~l~~i 400 (405)
T d1jf9a_ 339 GKHHAYDVGSFLDNYGIAVRTGHHCAMP------LMAYYNVP-----AMCRASLAMYNTHEEVDRLVTGLQRI 400 (405)
T ss_dssp TTCCHHHHHHHHHHTTEECEEECTTCHH------HHHHTTCS-----CEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHCCcEEEccchhhhh------HHHhcCCC-----CEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 777777766666 89999999998653 45556654 89999999999999999999999873
|
| >d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=3.9e-36 Score=386.88 Aligned_cols=364 Identities=40% Similarity=0.635 Sum_probs=311.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhccc
Q psy15216 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAH 80 (2602)
Q Consensus 1 Ld~a~~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~ 80 (2602)
|||++++|+|+.|++++.+++...++||++ .|..+......++++|+++|+++|+++++|+|++|+|++++.++.++..
T Consensus 5 ld~a~~~~~p~~v~ea~~~~~~~~~~np~~-~~~~~~~~~~~~~~aR~~ia~l~~~~~~~i~~~~~~T~~l~~~~~~~~~ 83 (376)
T d1eg5a_ 5 FDNNATTRVDDRVLEEMIVFYREKYGNPNS-AHGMGIEANLHMEKAREKVAKVLGVSPSEIFFTSCATESINWILKTVAE 83 (376)
T ss_dssp CBTTTCCCCCHHHHHHHHHHHHTCCCCTTC-SSHHHHHHHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHHHHHHHHH
T ss_pred EECcccccCCHHHHHHHHHHHHHcCCCCcc-ccHHHHHHHHHHHHHHHHHHHHcCCCCCcEEEECCHHHHHHhhhhcccc
Confidence 899999999999999999999999999986 6777888888999999999999999999999999999999999987654
Q ss_pred ccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHH
Q psy15216 81 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGE 160 (2602)
Q Consensus 81 ~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~ 160 (2602)
..+.+|+.|+++..+|+++..+++.+++.|++++++|+++++.+|+++++++++++|++|+++|++|+||.+.|++++.+
T Consensus 84 ~~~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~v~~vp~~~~~~id~~~l~~~i~~~t~lv~is~v~~~tG~~~~~~~i~~ 163 (376)
T d1eg5a_ 84 TFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVDEDTFLVSIMAANNEVGTIQPVEDVTR 163 (376)
T ss_dssp HTTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCCTTEEEEEEESBCTTTCBBCCHHHHHH
T ss_pred cccccCcccccccccchhhHHHHHHHHhcCCEEEEEcCCCCCeECHHHHHHhcCCCceEEEEECCccccceeeeehhhhh
Confidence 44688999999999999999999988889999999999999999999999999999999999999999999999999999
Q ss_pred HHHhc--CCEEEEecccccccccccCCCCCccEEEeccccccCCCCcEEEEEecCCCCcccceecCCCccccccccCcch
Q psy15216 161 LCRSK--GVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLAT 238 (2602)
Q Consensus 161 la~~~--g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K~~Gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~ 238 (2602)
+++.+ ++++++|++|++|..++++.++++|++++|+|||+||+|.|+++++++. .++|...+|+....+..|+.+.
T Consensus 164 ~~~~~~~~~~~~vD~~q~~g~~~~d~~~~~~D~~~~s~~K~~gp~G~~~l~~~~~~--~~~p~~~g~~~~~~~~~~~~~~ 241 (376)
T d1eg5a_ 164 IVKKKNKETLVHVDAVQTIGKIPFSLEKLEVDYASFSAHKFHGPKGVGITYIRKGV--PIRPLIHGGGQERGLRSGTQNV 241 (376)
T ss_dssp HHHHHCTTCEEEEECTTTTTTSCCCCTTTCCSEEEEEGGGGTSCTTCEEEEECTTS--CCCCSBCSSCTTTTTBCSCCCH
T ss_pred hhhhcccCceeEEEeeeccccccccccccCccceecccceeecCCCceeEEeccCc--ccCCcccCCCCcccccCCcccc
Confidence 98654 8999999999999999999999999999999999999999999998863 5778888888878888899999
Q ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcccChhHHHHHh--CCeEEc
Q psy15216 239 HQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDIAVS 316 (2602)
Q Consensus 239 ~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~v~ 316 (2602)
........+.............+...+..++.+.|.. ....+.............+.++..++..+...| +||.++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~vr 319 (376)
T d1eg5a_ 242 PGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMN--LGAHIITPLEISLPNTLSVSFPNIRGSTLQNLLSGYGIYVS 319 (376)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHT--TTCEECSCTTSBCTTEEEEECTTCCHHHHHHHHHHTTEECB
T ss_pred hhhhhHHHHhhccccchhhhhhhhhhhhhhhcccccc--ccccccccccccccceeeeccCCCCHHHHHHHHhhCCeEEe
Confidence 8888877777765556677777888888889999876 344455444445566777888888888877777 899999
Q ss_pred ccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 317 SGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 317 ~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
+|.+|.++...+++.+..+|++.....++||||+++|||.+|||+++++|++.
T Consensus 320 ~G~~c~~~~~~~~~~l~~~gi~~~~~~~~iRiS~~~ynt~edid~l~~~L~~i 372 (376)
T d1eg5a_ 320 TSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIEEI 372 (376)
T ss_dssp C------------CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred CcchhcCCccchhHHHHHcCCCcccCCCEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 99999887777778889999987666789999999999999999999999974
|
| >d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Probable cysteine desulfurase SufS species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=100.00 E-value=5.4e-36 Score=387.95 Aligned_cols=359 Identities=25% Similarity=0.361 Sum_probs=311.1
Q ss_pred eeeccC-CCCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCC-CCcEEEeCCHHHHHHHHHH
Q psy15216 1395 NIVFKD-ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYAD-PREIIWTSGATESNNLAIK 1472 (2602)
Q Consensus 1395 ~v~L~~-~~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~-~~~iv~t~gaT~al~~al~ 1472 (2602)
.+|||+ ++++.|..+++++.+++.+.++||+++.|..+......++++|+.+++++|++ ++.+++++|+|+++++++.
T Consensus 23 ~iYld~a~~~~~p~~v~~~~~~~~~~~~~n~~s~~~~~~~~~~~~~e~aR~~ia~llga~~~~~i~~~~~tt~~~n~~~~ 102 (408)
T d1t3ia_ 23 LVYLDNAATSQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNATEAINLVAY 102 (408)
T ss_dssp CEECBTTTCCCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHH
T ss_pred eEEeeCccccCCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCcccEEeecchHHHHHHHHh
Confidence 589975 55788999999999999999999998888999999999999999999999996 5779999999999999998
Q ss_pred hhhhhhccCCCEEEEcCCCCcchHHHHHHH-HhCCcEEEEeccCCCCCcChhHHHhhccCCceEEEEeccccccccccCh
Q psy15216 1473 GAAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPI 1551 (2602)
Q Consensus 1473 ~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~-~~~G~~v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l 1551 (2602)
++....+++|++|++++.+|++...++..+ ++.|..+++++.+.++..+.+.++++++++|++|+++|++|.||.++|+
T Consensus 103 ~~~~~~~~~g~~il~s~~e~~s~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~l~~~~~~~t~lv~i~~~~~~tG~~~p~ 182 (408)
T d1t3ia_ 103 SWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQESFDLEHFKTLLSEKTKLVTVVHISNTLGCVNPA 182 (408)
T ss_dssp HTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCTTSSBCHHHHHHHCCTTEEEEEEESBCTTTCBBCCH
T ss_pred hccccccCCCCEEEeecccchhhhhhhhhhhhccCceEeeeeccccccccHHHhhhccCCCceEEEEecccccccccCcH
Confidence 865445689999999999999999888765 5569999999998888899999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCEEEEecccccCcccccCCCCCccEEEEccccccCCCceEEEEEecCCCCccccccccCCc--------
Q psy15216 1552 LEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGH-------- 1623 (2602)
Q Consensus 1552 ~~I~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K~~gp~G~G~l~~~~~~~~~l~~~~~g~~~-------- 1623 (2602)
++|.++|+++|+++++|++|++|..++|+.++++|++++|+||++||+|+|+++++++....+.|...||..
T Consensus 183 ~~i~~~~~~~g~~~ivDa~q~~g~~~id~~~~~~D~~~~s~hK~~gp~G~g~l~v~~~~~~~~~p~~~g~~~~~~~~~~~ 262 (408)
T d1t3ia_ 183 EEIAQLAHQAGAKVLVDACQSAPHYPLDVQLIDCDWLVASGHKMCAPTGIGFLYGKEEILEAMPPFFGGGEMIAEVFFDH 262 (408)
T ss_dssp HHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGTTSCTTCEEEEECHHHHHHSCCCSCSTTSEEEECSSC
T ss_pred HHHhhhhhccCceeeeccceecccccccccccCCceEEeccccccCCCCccccccchhhhhcCCceecCCcccccccccc
Confidence 999999999999999999999999999999999999999999999999999999998876666665554432
Q ss_pred ------cccCCCCCcchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCC--CCCceEEEEE
Q psy15216 1624 ------EYGLRSGTLATHQIVGMGEAFRLAR-IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNN--RIPHNLNISF 1694 (2602)
Q Consensus 1624 ------~~~~~~gt~~~~~~~al~~aL~~~~-~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~--~~~~~~~~~~ 1694 (2602)
+.+++.||++++.++++..+++++. .+++++.++...+.+++.+.+.+ .+++.+.++... ....+..|.+
T Consensus 263 ~~~~~~~~r~e~Gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~~~~~~~iv~f~~ 341 (408)
T d1t3ia_ 263 FTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQ-IPQLRLYGPNPKHGDRAALASFNV 341 (408)
T ss_dssp EEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHT-CTTEEEESCCGGGSCBCSEEEEEE
T ss_pred cccCCchhhhcCCcHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhHHhhhhcc-CccccccCCCccccCcceEEEEEe
Confidence 3578899999999999999999655 57899999999999999999987 789988875433 2345667777
Q ss_pred ecCCcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1695 NFIEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1695 ~~~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
++.+..++...| +||.++.|++|..+ ....++.. +.||||+++|||.+|||+++++|++.
T Consensus 342 ~~~~~~~v~~~L~~~gI~v~~G~~c~~~------~~~~~~~~-----g~vRiS~~~ynt~~did~li~~L~~~ 403 (408)
T d1t3ia_ 342 AGLHASDVATMVDQDGIAIRSGHHCTQP------LHRLFDAS-----GSARASLYFYNTKEEIDLFLQSLQAT 403 (408)
T ss_dssp TTBCHHHHHHHHHTTTEECBCSCTTCHH------HHHHTTCC-----CCEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhhCCcEEecCcccccH------HHHhhcCC-----ccEEEECCCCCCHHHHHHHHHHHHHH
Confidence 887888887776 89999999999753 22334433 78999999999999999999999973
|
| >d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=2.7e-34 Score=369.57 Aligned_cols=366 Identities=40% Similarity=0.637 Sum_probs=308.9
Q ss_pred eeeccC-CCCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHh
Q psy15216 1395 NIVFKD-ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKG 1473 (2602)
Q Consensus 1395 ~v~L~~-~~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~ 1473 (2602)
.+|||+ +++++|+.++|++.+++.+.++||++ .|..+....+.++++|+++++++|+++++|+|++|+|++++.++.+
T Consensus 2 ~iyld~a~~~~~p~~v~ea~~~~~~~~~~np~~-~~~~~~~~~~~~~~aR~~ia~l~~~~~~~i~~~~~~T~~l~~~~~~ 80 (376)
T d1eg5a_ 2 RVYFDNNATTRVDDRVLEEMIVFYREKYGNPNS-AHGMGIEANLHMEKAREKVAKVLGVSPSEIFFTSCATESINWILKT 80 (376)
T ss_dssp CEECBTTTCCCCCHHHHHHHHHHHHTCCCCTTC-SSHHHHHHHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHHHHHH
T ss_pred EEEEECcccccCCHHHHHHHHHHHHHcCCCCcc-ccHHHHHHHHHHHHHHHHHHHHcCCCCCcEEEECCHHHHHHhhhhc
Confidence 378975 45789999999999999999999986 6777888888999999999999999999999999999999999987
Q ss_pred hhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccCCceEEEEeccccccccccChHH
Q psy15216 1474 AAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILE 1553 (2602)
Q Consensus 1474 l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~ 1553 (2602)
+....+.+|+.|+++..+|+++..+++.++..|++++++|+++++.+|+++++++|+++|++|+++|++|+||...|+++
T Consensus 81 ~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~v~~vp~~~~~~id~~~l~~~i~~~t~lv~is~v~~~tG~~~~~~~ 160 (376)
T d1eg5a_ 81 VAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVDEDTFLVSIMAANNEVGTIQPVED 160 (376)
T ss_dssp HHHHTTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCCTTEEEEEEESBCTTTCBBCCHHH
T ss_pred ccccccccCcccccccccchhhHHHHHHHHhcCCEEEEEcCCCCCeECHHHHHHhcCCCceEEEEECCccccceeeeehh
Confidence 65445689999999999999999999988888999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhc--CCEEEEecccccCcccccCCCCCccEEEEccccccCCCceEEEEEecCCCCccccccccCCccccCCCCC
Q psy15216 1554 IGELCRSK--GVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGT 1631 (2602)
Q Consensus 1554 I~~ia~~~--gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K~~gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt 1631 (2602)
|.++++.+ ++++++|++|++|..++++.++++|++++|+||++||+|.|+++++++. .+.|.+.||+....+..|+
T Consensus 161 i~~~~~~~~~~~~~~vD~~q~~g~~~~d~~~~~~D~~~~s~~K~~gp~G~~~l~~~~~~--~~~p~~~g~~~~~~~~~~~ 238 (376)
T d1eg5a_ 161 VTRIVKKKNKETLVHVDAVQTIGKIPFSLEKLEVDYASFSAHKFHGPKGVGITYIRKGV--PIRPLIHGGGQERGLRSGT 238 (376)
T ss_dssp HHHHHHHHCTTCEEEEECTTTTTTSCCCCTTTCCSEEEEEGGGGTSCTTCEEEEECTTS--CCCCSBCSSCTTTTTBCSC
T ss_pred hhhhhhhcccCceeEEEeeeccccccccccccCccceecccceeecCCCceeEEeccCc--ccCCcccCCCCcccccCCc
Confidence 99998655 9999999999999999999999999999999999999999999998763 4778888888878888899
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecCCcHHHHHhc--CCE
Q psy15216 1632 LATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDI 1709 (2602)
Q Consensus 1632 ~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI 1709 (2602)
.+.........+.............+......++.+.|.. ..................+.++..++..+...| +||
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI 316 (376)
T d1eg5a_ 239 QNVPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMN--LGAHIITPLEISLPNTLSVSFPNIRGSTLQNLLSGYGI 316 (376)
T ss_dssp CCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHT--TTCEECSCTTSBCTTEEEEECTTCCHHHHHHHHHHTTE
T ss_pred ccchhhhhHHHHhhccccchhhhhhhhhhhhhhhcccccc--ccccccccccccccceeeeccCCCCHHHHHHHHhhCCe
Confidence 9988888877777665556677777788888889999876 333444444444566777788888887777666 899
Q ss_pred EEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1710 AVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1710 ~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
.+++|.+|..+...+++++..+|+......++||+|+++|||.+|||+++++|++.
T Consensus 317 ~vr~G~~c~~~~~~~~~~l~~~gi~~~~~~~~iRiS~~~ynt~edid~l~~~L~~i 372 (376)
T d1eg5a_ 317 YVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIEEI 372 (376)
T ss_dssp ECBC------------CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred EEeCcchhcCCccchhHHHHHcCCCcccCCCEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 99999999877666677788889887666789999999999999999999999983
|
| >d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystine C-S lyase C-des species: Synechocystis sp. [TaxId: 1143]
Probab=100.00 E-value=8.8e-33 Score=356.18 Aligned_cols=341 Identities=18% Similarity=0.259 Sum_probs=284.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhccc
Q psy15216 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAH 80 (2602)
Q Consensus 1 Ld~a~~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~ 80 (2602)
||+++.+|.|..|++++.+++...+.++.. .+..+......++++|+.+|+++|+++++|++|+|+|+|+++++.++.
T Consensus 11 ld~~~~~~~p~~v~ea~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~r~~la~~~~~~~~~i~~~~g~t~a~~~~~~~l~- 88 (381)
T d1elua_ 11 FNFGGQGILPTVALEAITAMYGYLQENGPF-SIAANQHIQQLIAQLRQALAETFNVDPNTITITDNVTTGCDIVLWGLD- 88 (381)
T ss_dssp CCTTTCCCCCHHHHHHHHHHHHHHHHHCSS-SHHHHHHHHHHHHHHHHHHHHHTTSCGGGEEEESSHHHHHHHHHHHSC-
T ss_pred eeCCcccCCCHHHHHHHHHHHHHhhcCCCc-cchhhHHHHHHHHHHHHHHHHHhCCCcccEEEECChHHHhhhcchhhh-
Confidence 799999999999999999998776555544 344455666788999999999999999999999999999999999986
Q ss_pred ccccCCCEEEEcCCCCcccHHHHHHH-HhCCcEEEEeccCCCCc--cChHHHHhhccCCceEEEEecccCcccccccHHH
Q psy15216 81 FYKKRGKHIITVQTEHKSVLDSIRKL-ENDGFRVTYLKPKNNGL--ITLSQLEEKICSDTILVSVMLVNNEIGVIQPILE 157 (2602)
Q Consensus 81 ~~~~~gd~Vlv~~~~~~s~~~~~~~~-~~~G~~v~~v~~~~~~~--ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~ 157 (2602)
+++||+|++++++|+++..+|..+ ++.|++++.++.+.... ...+.++++++++|+++++++++|+||.+.|+++
T Consensus 89 --~~~g~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~i~~~t~~v~i~~~~n~tG~~~~~~~ 166 (381)
T d1elua_ 89 --WHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLGPKTRLVILSHLLWNTGQVLPLAE 166 (381)
T ss_dssp --CCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCCTTEEEEEEESBCTTTCCBCCHHH
T ss_pred --hcCCceEEEeccccceeeeccccccccccccccccccccccccchHHHHHHhhhcccccccccccccccccccchhhH
Confidence 589999999999999999888776 55699999998765433 2367888999999999999999999999999999
Q ss_pred HHHHHHhc----CCEEEEecccccccccccCCCCCccEEEeccccc-cCCCCcEEEEEecCCCCcccceecCCCc-----
Q psy15216 158 IGELCRSK----GVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKI-YGPKGIGALYIRRNPRTRIEAQIHGGGH----- 227 (2602)
Q Consensus 158 I~~la~~~----g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K~-~Gp~G~G~l~~~~~~~~~l~~~~~g~~~----- 227 (2602)
|.++||++ ++++++|++|++|..++++..+++|++++|+||+ ++|.|+|+++++++..+.+.|...+|+.
T Consensus 167 I~~l~~~~~~~~~~~~~vD~~~~~g~~~~~~~~~~~D~~~~s~~K~~~~p~G~g~l~~~~~~~~~~~p~~~~~~~~~~~~ 246 (381)
T d1elua_ 167 IMAVCRRHQGNYPVRVLVDGAQSAGSLPLDFSRLEVDYYAFTGHKWFAGPAGVGGLYIHGDCLGEINPTYVGWRSITYGA 246 (381)
T ss_dssp HHHHHHHCCSSSCCEEEEECTTTBTTBCCCTTTSCCSEEEEESSSTTCCCTTCEEEEECTTTGGGCCCCSCCTTTEEECT
T ss_pred HHHHHhhcccccccccccccccccccccccccccccccccccccccccccchhhHHHhhHHHHHhcCccccccccccccc
Confidence 99999984 6999999999999999999999999999999995 5689999999999999888887766642
Q ss_pred ----------cccccccCcchhHHHHHHHHHHHHH-Hh-HHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEE
Q psy15216 228 ----------EYGLRSGTLATHQIVGMGEAFRLAR-IE-MKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLN 295 (2602)
Q Consensus 228 ----------~~~~~~gt~~~~~~~al~~al~~~~-~~-~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~ 295 (2602)
..++..||++...++++.+|++... .+ .+.+.++..++++++.++|++ ++++++++++.++. .++.
T Consensus 247 ~~~~~~~~~~~~~~~~gt~~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~-~~vs 324 (381)
T d1elua_ 247 KGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQ-LPHVHCLATSAPQA-GLVS 324 (381)
T ss_dssp TSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH-STTEEESCSSCCSS-SEEE
T ss_pred ccccccccccccccccccccchhhhhhhhhhhhHHHhcccccchhhhhhHHHHHHHHHhc-CCCeEecCCCCccc-cEEE
Confidence 2345678999999999999999544 33 356678889999999999988 89999997765543 3455
Q ss_pred EEEccc-ChhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 296 ISFNFI-EGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 296 ~~~~~~-~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
|.+++. +.+.+...| +||.++. +.. +++||||+|+|||.+|||+++++|++.
T Consensus 325 f~~~~~~~~~~i~~~L~~~gi~v~~---~~~-------------------~~~lRis~~~~nt~edid~ll~~l~e~ 379 (381)
T d1elua_ 325 FTVDSPLGHRAIVQKLEEQRIYLRT---IAD-------------------PDCIRACCHYITDEEEINHLLARLADF 379 (381)
T ss_dssp EEECSSSCHHHHHHHHHHTTEECEE---ETT-------------------TTEEEEECCTTCCHHHHHHHHHHHTTC
T ss_pred EEcCCCCCHHHHHHHHHhCCcEEEe---cCC-------------------CCEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 555553 445666666 7888763 111 278999999999999999999999963
|
| >d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystine C-S lyase C-des species: Synechocystis sp. [TaxId: 1143]
Probab=100.00 E-value=3e-31 Score=341.79 Aligned_cols=343 Identities=19% Similarity=0.258 Sum_probs=282.2
Q ss_pred eeeeccCC-CCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHH
Q psy15216 1394 TNIVFKDA-TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIK 1472 (2602)
Q Consensus 1394 ~~v~L~~~-~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~ 1472 (2602)
+.+|||.+ .++.|..+++++.++++..+.++.. .+..+......++++|+.+++++|+++++|+||+|+|+|+++++.
T Consensus 7 ~~~yld~~~~~~~p~~v~ea~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~r~~la~~~~~~~~~i~~~~g~t~a~~~~~~ 85 (381)
T d1elua_ 7 NKTYFNFGGQGILPTVALEAITAMYGYLQENGPF-SIAANQHIQQLIAQLRQALAETFNVDPNTITITDNVTTGCDIVLW 85 (381)
T ss_dssp TSEECCTTTCCCCCHHHHHHHHHHHHHHHHHCSS-SHHHHHHHHHHHHHHHHHHHHHTTSCGGGEEEESSHHHHHHHHHH
T ss_pred CCEEeeCCcccCCCHHHHHHHHHHHHHhhcCCCc-cchhhHHHHHHHHHHHHHHHHHhCCCcccEEEECChHHHhhhcch
Confidence 45788754 4678888999999998876555544 344556667788999999999999999999999999999999999
Q ss_pred hhhhhhccCCCEEEEcCCCCcchHHHHHHH-HhCCcEEEEeccCCCCC--cChhHHHhhccCCceEEEEecccccccccc
Q psy15216 1473 GAAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDGFRVTYLKPKNNGL--ITLSQLEEKICSDTILVSVMLVNNEIGVIQ 1549 (2602)
Q Consensus 1473 ~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~-~~~G~~v~~v~~~~~~~--id~d~l~~~i~~~t~lv~l~~~~n~tG~~~ 1549 (2602)
++. +++||+|++++++|+++..++..+ ++.|++++.++.+.+.. .+.+.++++++++|+++++++++|+||.+.
T Consensus 86 ~l~---~~~g~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~i~~~t~~v~i~~~~n~tG~~~ 162 (381)
T d1elua_ 86 GLD---WHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLGPKTRLVILSHLLWNTGQVL 162 (381)
T ss_dssp HSC---CCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCCTTEEEEEEESBCTTTCCBC
T ss_pred hhh---hcCCceEEEeccccceeeeccccccccccccccccccccccccchHHHHHHhhhcccccccccccccccccccc
Confidence 985 589999999999999998888766 44599999998765433 236788899999999999999999999999
Q ss_pred ChHHHHHHhhhc----CCEEEEecccccCcccccCCCCCccEEEEcccc-ccCCCceEEEEEecCCCCccccccccCCc-
Q psy15216 1550 PILEIGELCRSK----GVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGH- 1623 (2602)
Q Consensus 1550 ~l~~I~~ia~~~----gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K-~~gp~G~G~l~~~~~~~~~l~~~~~g~~~- 1623 (2602)
|+++|.++||+| ++++++|++|++|..++++.++++|++++|+|| +++|.|+|+++++++..+.+.|...+|..
T Consensus 163 ~~~~I~~l~~~~~~~~~~~~~vD~~~~~g~~~~~~~~~~~D~~~~s~~K~~~~p~G~g~l~~~~~~~~~~~p~~~~~~~~ 242 (381)
T d1elua_ 163 PLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPLDFSRLEVDYYAFTGHKWFAGPAGVGGLYIHGDCLGEINPTYVGWRSI 242 (381)
T ss_dssp CHHHHHHHHHHCCSSSCCEEEEECTTTBTTBCCCTTTSCCSEEEEESSSTTCCCTTCEEEEECTTTGGGCCCCSCCTTTE
T ss_pred hhhHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccchhhHHHhhHHHHHhcCccccccccc
Confidence 999999999985 699999999999999999999999999999999 45799999999999988888877666542
Q ss_pred --------------cccCCCCCcchhHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCC
Q psy15216 1624 --------------EYGLRSGTLATHQIVGMGEAFRLARI-E-MKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIP 1687 (2602)
Q Consensus 1624 --------------~~~~~~gt~~~~~~~al~~aL~~~~~-~-~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~ 1687 (2602)
..++..||++...++++.+|++.... + .+.+.++..++++++.++|.+ ++++.+++++....
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~- 320 (381)
T d1elua_ 243 TYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQ-LPHVHCLATSAPQA- 320 (381)
T ss_dssp EECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH-STTEEESCSSCCSS-
T ss_pred ccccccccccccccccccccccccchhhhhhhhhhhhHHHhcccccchhhhhhHHHHHHHHHhc-CCCeEecCCCCccc-
Confidence 23467789999999999999995543 3 455668889999999999998 89999987655433
Q ss_pred ceEEEEEecC-CcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1688 HNLNISFNFI-EGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1688 ~~~~~~~~~~-~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
.+..|.+++. +.+.+...| +||.++. +..+ ++||+|++.|||.+|||+++++|++
T Consensus 321 ~~vsf~~~~~~~~~~i~~~L~~~gi~v~~---~~~~-------------------~~lRis~~~~nt~edid~ll~~l~e 378 (381)
T d1elua_ 321 GLVSFTVDSPLGHRAIVQKLEEQRIYLRT---IADP-------------------DCIRACCHYITDEEEINHLLARLAD 378 (381)
T ss_dssp SEEEEEECSSSCHHHHHHHHHHTTEECEE---ETTT-------------------TEEEEECCTTCCHHHHHHHHHHHTT
T ss_pred cEEEEEcCCCCCHHHHHHHHHhCCcEEEe---cCCC-------------------CEEEEecCCCCCHHHHHHHHHHHHh
Confidence 3444555543 345666666 7888763 2222 7899999999999999999999996
|
| >d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Escherichia coli, gene dnaK [TaxId: 562]
Probab=99.97 E-value=5.2e-32 Score=307.17 Aligned_cols=176 Identities=44% Similarity=0.655 Sum_probs=163.9
Q ss_pred EEEEEcCcccEEEEEEECCeeEEEeCCCCCccccEEEEEecCCcEEEcHHHHhhhccCCCCchhhhhhhhCCCCCCCC--
Q psy15216 639 SIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNIN-- 716 (2602)
Q Consensus 639 vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~v~~~~~~~~~vG~~A~~~~~~~p~~~~~~~K~~lg~~~~~~~-- 716 (2602)
|||||||||||+||++.+++++++.|.+|++.+||+++|.+++++++|+.|+.+..++|.++++++||+||+++.+..
T Consensus 2 VvGIDfGTt~s~va~~~~~~~~ii~n~~~~~~~ps~v~~~~~~~~~~G~~A~~~~~~~p~~~i~~~KrllG~~~~~~~~~ 81 (183)
T d1dkgd1 2 IIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQ 81 (183)
T ss_dssp CCEEECCSSEEEEEEEETTEEEECCCTTSCSEEECEEEECTTSCEEESHHHHTTSTTCGGGEEECGGGTTTCBSCSHHHH
T ss_pred EEEEEcChhcEEEEEEECCEEEEEEcCCCcccccceeeecCCCCEEccHHHHHhhhcCCccEEeeeHHHcCCCCCcHHHH
Confidence 589999999999999999999999999999999999999988889999999999999999999999999999877642
Q ss_pred --CCCCCeeee-cCCCceEEEEeCceeCHHHHHHHHHHHHHHHHHHhhcCccceEEEEEcCCCCHHHHHHHHHHHHHcCC
Q psy15216 717 --TNSFPYDFQ-NKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGL 793 (2602)
Q Consensus 717 --~~~~~~~~~-~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~~~~Aa~~AGl 793 (2602)
...+||++. .+++...+...++.++|+++++++|++|++.+++++|.++.++|||||++|++.||++|++||++|||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~a~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~~r~~l~~Aa~~AG~ 161 (183)
T d1dkgd1 82 RDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGL 161 (183)
T ss_dssp HHTTTCSSEEEECSSSBEEEEETTEEECHHHHHHHHHHHHHHHHHHHHSSCCCEEEECBCTTCCHHHHHHHHHHHHHTTC
T ss_pred hhhhcCCEEEEEcCCCcEEEEECCEEECHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 236788887 66788888888899999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEechhHHHHHHhhhccC
Q psy15216 794 NVLRLLNEPTSAAIAYKLDKN 814 (2602)
Q Consensus 794 ~~~~li~EPtAAAl~y~~~~~ 814 (2602)
++++||+||+|||++|+++++
T Consensus 162 ~~~~li~EP~AAAl~Ygl~k~ 182 (183)
T d1dkgd1 162 EVKRIINEPTAAALAYGLDKG 182 (183)
T ss_dssp EESCCCBHHHHHHHHHTCCC-
T ss_pred CEEEEecCHHHHHHHhcccCC
Confidence 999999999999999998754
|
| >d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.97 E-value=1.2e-30 Score=299.08 Aligned_cols=184 Identities=36% Similarity=0.561 Sum_probs=172.5
Q ss_pred ccceEEEEEeCCceEEEEEEEEECCEEEEEEEecCCCCcchHHHHHHHHHHHHHHhhcc-----CCHHHHHHHHHHHHHH
Q psy15216 816 FEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKK-----LSYKDVNILMIKSREI 890 (2602)
Q Consensus 816 ~~~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~~-----~~~~~~~~l~~~~e~~ 890 (2602)
.+++|||||+||||||+|++++.++.++++++.|+..+||.+||++|++|+.++|..+. .+++.+.+|+.+||++
T Consensus 3 ~e~~VlV~D~GggT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~ 82 (193)
T d1bupa2 3 AERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRLRTACERA 82 (193)
T ss_dssp SCEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHHSCCCTTCHHHHHHHHHHHHHH
T ss_pred CCcEEEEEEeCCCeEEEEEEEEeCCEEEEEEecCCCCcchhHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999886543 5788999999999999
Q ss_pred HHHcccccceEEEEE-ecCCceEEEEeCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccceEEEecCccchHHHHHHH
Q psy15216 891 KELLSYQSSVKLNVK-LSDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGV 969 (2602)
Q Consensus 891 K~~LS~~~~~~~~i~-~~~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~a~~~~~~i~~V~LvGG~sr~P~v~~~l 969 (2602)
|+.||.+.++.+.++ +..+.+...+|||++|+++++|+++++.++++++|+++++.+.+|+.|+||||+||+|+|++.|
T Consensus 83 K~~ls~~~~~~~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~sr~p~v~~~i 162 (193)
T d1bupa2 83 KRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLL 162 (193)
T ss_dssp HHHHTTSSEEEEEEEEEETTEEEEEEEEHHHHHHHTHHHHHHTHHHHHHHHHHHTCCGGGCCEEEEESGGGGCHHHHHHH
T ss_pred hhccCCCceEEEEEecccCCCccceEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCccccHHHHHHH
Confidence 999999999999988 5678899999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhcc-CcccCcCCcchHhHHHHHHHhHHhc
Q psy15216 970 SNFFK-TTLLTSIDPDKAVVFGAAIQANFLS 999 (2602)
Q Consensus 970 ~~~f~-~~~~~~~~p~~aVa~GAa~~a~~l~ 999 (2602)
+++|+ .++..+.||++|||+|||++|++++
T Consensus 163 ~~~f~~~~i~~~~~p~~aVa~GaA~~aa~ls 193 (193)
T d1bupa2 163 QDFFNGKELNKSINPDEAVAYGAAVQAAILS 193 (193)
T ss_dssp HHHTTTCCCBCSSCGGGHHHHHHHHHHHHHC
T ss_pred HHHcCCCCCCCCCChHHHHHHHHHHHHHhhC
Confidence 99995 6677889999999999999999875
|
| >d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Escherichia coli, gene dnaK [TaxId: 562]
Probab=99.97 E-value=7.6e-31 Score=300.66 Aligned_cols=183 Identities=38% Similarity=0.600 Sum_probs=168.2
Q ss_pred cceEEEEEeCCceEEEEEEEEE----CCEEEEEEEecCCCCcchHHHHHHHHHHHHHHhhcc-----CCHHHHHHHHHHH
Q psy15216 817 EGIFAVYDLGGGTFDISILKFK----NGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKK-----LSYKDVNILMIKS 887 (2602)
Q Consensus 817 ~~~vlV~D~GGGT~Dvsv~~~~----~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~~-----~~~~~~~~l~~~~ 887 (2602)
+++|||||+||||||+|++++. ++.++++++.++..+||++||++|++|+.++|..+. .+++.+.+|+.+|
T Consensus 2 ~~~vlV~D~GggT~Dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~rL~~~~ 81 (198)
T d1dkgd2 2 NRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAA 81 (198)
T ss_dssp EEEEEEEEECSSCEEEEEEEEEC----CCCEEEEEEEESSCSHHHHHHHHHHHHHHHHHHHHCCCSTTCHHHHHHHHHHH
T ss_pred CeEEEEEEcCCCcEEEEEEEEEccCCCcEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHH
Confidence 3589999999999999999997 457999999999999999999999999999886654 4788999999999
Q ss_pred HHHHHHcccccceEEEEEe-----cCCceEEEEeCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccceEEEecCccch
Q psy15216 888 REIKELLSYQSSVKLNVKL-----SDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRM 962 (2602)
Q Consensus 888 e~~K~~LS~~~~~~~~i~~-----~~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~a~~~~~~i~~V~LvGG~sr~ 962 (2602)
|++|+.||.+.++++.++. .++.+++++|||++|+++++|+++++.++|+++|+++++++.+|+.|+|+||+||+
T Consensus 82 e~~K~~Ls~~~~~~i~~~~~~~~~~~~~~~~~~itr~~~~~~~~~~~~~~~~~i~~~l~~a~~~~~~Id~v~lvGG~sr~ 161 (198)
T d1dkgd2 82 EKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTRM 161 (198)
T ss_dssp HHHHHHTTSSSEEEEEEEEEEEETTEEEEEEEEEEHHHHHHHSHHHHHHHHHHHHHHHHTTTCCTTTCCEEEEESGGGGS
T ss_pred HHHHHHhcCCCeEEEEEeeeecCCCCCceEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHCcEEEEEcCccCC
Confidence 9999999999999888873 22357889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCcccCcCCcchHhHHHHHHHhHHhc
Q psy15216 963 KHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLS 999 (2602)
Q Consensus 963 P~v~~~l~~~f~~~~~~~~~p~~aVa~GAa~~a~~l~ 999 (2602)
|+|+++|+++|+.++..+.||++|||+|||++|++||
T Consensus 162 p~l~~~i~~~f~~~~~~~~~p~~aVa~GAa~~aa~lS 198 (198)
T d1dkgd2 162 PMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLT 198 (198)
T ss_dssp HHHHHHHHHHHSSCCBCSSCTTTHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHCCCCCCCCChHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999875
|
| >d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Escherichia coli, gene dnaK [TaxId: 562]
Probab=99.97 E-value=1.1e-30 Score=296.07 Aligned_cols=175 Identities=44% Similarity=0.661 Sum_probs=162.4
Q ss_pred EEEEEcCcccEEEEEEECCeEEEEeCCCCCccccEEEEEecCCcEEecHHHHhhhccCCCCchhhhhhhcCCCCCCCC--
Q psy15216 2035 SIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNIN-- 2112 (2602)
Q Consensus 2035 vvGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~~~~~~vG~~A~~~~~~~p~~~~~~~K~~lg~~~~~~~-- 2112 (2602)
|||||||||||+||++.+++++++.|++|++.+||+++|.+++++++|+.|..+..++|+++++++|||||++..+..
T Consensus 2 VvGIDfGTt~s~va~~~~~~~~ii~n~~~~~~~ps~v~~~~~~~~~~G~~A~~~~~~~p~~~i~~~KrllG~~~~~~~~~ 81 (183)
T d1dkgd1 2 IIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQ 81 (183)
T ss_dssp CCEEECCSSEEEEEEEETTEEEECCCTTSCSEEECEEEECTTSCEEESHHHHTTSTTCGGGEEECGGGTTTCBSCSHHHH
T ss_pred EEEEEcChhcEEEEEEECCEEEEEEcCCCcccccceeeecCCCCEEccHHHHHhhhcCCccEEeeeHHHcCCCCCcHHHH
Confidence 689999999999999999999999999999999999999888899999999999999999999999999999876642
Q ss_pred --CCCCCeee-ecCCCceEEEecCceeCHHHHHHHHHHHHHHHHHHhhccccceEEEeeCCCCCHHHHHHHHHHHHHcCC
Q psy15216 2113 --TNSFPYDF-QNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGL 2189 (2602)
Q Consensus 2113 --~~~~~~~~-~~~~g~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~l~~Aa~~AGl 2189 (2602)
...+||++ ..+++...+...++.++|+++++++|++|++.++++++.++.++|||||++|++.||++|++||+.|||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~a~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~~r~~l~~Aa~~AG~ 161 (183)
T d1dkgd1 82 RDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGL 161 (183)
T ss_dssp HHTTTCSSEEEECSSSBEEEEETTEEECHHHHHHHHHHHHHHHHHHHHSSCCCEEEECBCTTCCHHHHHHHHHHHHHTTC
T ss_pred hhhhcCCEEEEEcCCCcEEEEECCEEECHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 34567776 356677878888889999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEeechhHHHHHHhhhcc
Q psy15216 2190 NVLRLLNEPTSAAIAYKLDK 2209 (2602)
Q Consensus 2190 ~~~~li~EP~AAAl~y~~~~ 2209 (2602)
++++||+||+|||++|++++
T Consensus 162 ~~~~li~EP~AAAl~Ygl~k 181 (183)
T d1dkgd1 162 EVKRIINEPTAAALAYGLDK 181 (183)
T ss_dssp EESCCCBHHHHHHHHHTCCC
T ss_pred CEEEEecCHHHHHHHhcccC
Confidence 99999999999999999865
|
| >d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.97 E-value=1.6e-30 Score=295.52 Aligned_cols=175 Identities=38% Similarity=0.592 Sum_probs=157.3
Q ss_pred eEEEEEcCcccEEEEEEECCeeEEEeCCCCCccccEEEEEecCCcEEEcHHHHhhhccCCCCchhhhhhhhCCCCCCCC-
Q psy15216 638 VSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNIN- 716 (2602)
Q Consensus 638 ~vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~v~~~~~~~~~vG~~A~~~~~~~p~~~~~~~K~~lg~~~~~~~- 716 (2602)
.|||||||||||+||++++|+++++.|.+|++.+||+|+|.++ ++++|..|+.+...+|.++++++||+||+++.+..
T Consensus 2 ~vvGIDfGTt~s~va~~~~g~~~ii~~~~~~r~~Ps~i~~~~~-~~~vG~~a~~~~~~~p~~~i~~~KrllG~~~~~~~~ 80 (185)
T d1bupa1 2 PAVGIDLGSTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFDDAVV 80 (185)
T ss_dssp CCEEEEECSSEEEEEEEETTEEEECCCTTSCSSEECCEEECSS-CEEETHHHHTTTTTCGGGEECCHHHHTTCCTTCHHH
T ss_pred CEEEEEcChhcEEEEEEECCEEEEEECCCCCccceeEEEECCC-cEEEeechHHHhhcCcccchhHHHHHhCCCCccHHH
Confidence 4799999999999999999999999999999999999999754 68999999999999999999999999999887742
Q ss_pred ---CCCCCeeeecCCCceEEEEe----CceeCHHHHHHHHHHHHHHHHHHhhcCccceEEEEEcCCCCHHHHHHHHHHHH
Q psy15216 717 ---TNSFPYDFQNKFGMLHIKTI----SGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAK 789 (2602)
Q Consensus 717 ---~~~~~~~~~~~~~~~~~~~~----~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~~~~Aa~ 789 (2602)
...+|+.+..+.+....... ...++|+++++++|++|++.++++++.++.++|||||++|++.||++|++||+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~el~a~~l~~l~~~a~~~~~~~~~~~VitvPa~f~~~qr~~~~~Aa~ 160 (185)
T d1bupa1 81 QSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGT 160 (185)
T ss_dssp HHHHTTCSSEEEEETTEEEEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHTSCCCEEEEEECTTCCHHHHHHHHHHHH
T ss_pred HHHhhcCCceEEcCCCCccEEEEEcCCceEEcHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCHHHHHHHHHHHH
Confidence 23677777766665544432 35789999999999999999999999999999999999999999999999999
Q ss_pred HcCCceEEEechhHHHHHHhhhcc
Q psy15216 790 LAGLNVLRLLNEPTSAAIAYKLDK 813 (2602)
Q Consensus 790 ~AGl~~~~li~EPtAAAl~y~~~~ 813 (2602)
+|||++++||+||+|||++|++++
T Consensus 161 ~AGl~~~~li~EP~AAAl~Ygldk 184 (185)
T d1bupa1 161 IAGLNVLRIINEPTAAAIAYGLDK 184 (185)
T ss_dssp HTTCEEEEEEEHHHHHHHHTTTTS
T ss_pred HcCCCeEEEEcCHHHHHHHhcccC
Confidence 999999999999999999999865
|
| >d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.96 E-value=5.2e-29 Score=285.49 Aligned_cols=183 Identities=36% Similarity=0.569 Sum_probs=167.7
Q ss_pred CceEEEEEeCCceEEEEEEEEeCCEEEEEEEecCCCCchhHHHHHHHHHHHHHHhhhc-----CChhHHHHHHHHHHHHH
Q psy15216 2213 EGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKK-----LSYKDVNILMIKSREIK 2287 (2602)
Q Consensus 2213 ~~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~~-----~~~~~~~~l~~~~e~~K 2287 (2602)
+++|||||+||||||+|++++.++.++++++.|+..+||.+||++|++|+.+++..+. ...+.+.+|+.+||++|
T Consensus 4 e~~VlV~D~GggT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K 83 (193)
T d1bupa2 4 ERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRLRTACERAK 83 (193)
T ss_dssp CEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHHSCCCTTCHHHHHHHHHHHHHHH
T ss_pred CcEEEEEEeCCCeEEEEEEEEeCCEEEEEEecCCCCcchhHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHh
Confidence 5789999999999999999999999999999999999999999999999998743321 23456778999999999
Q ss_pred HHhcccceEEEEEE-ecCCceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccceEEEEeCccchHHHHHHHH
Q psy15216 2288 ELLSYQSSVKLNVK-LSDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVS 2366 (2602)
Q Consensus 2288 ~~ls~~~~~~~~i~-~~~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~ 2366 (2602)
+.||.+.++.+.++ +..+.+..++|||++|+++++|+++++.++++++|+++++.+.+|+.|+||||+||+|+|++.|+
T Consensus 84 ~~ls~~~~~~~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~sr~p~v~~~i~ 163 (193)
T d1bupa2 84 RTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQ 163 (193)
T ss_dssp HHHTTSSEEEEEEEEEETTEEEEEEEEHHHHHHHTHHHHHHTHHHHHHHHHHHTCCGGGCCEEEEESGGGGCHHHHHHHH
T ss_pred hccCCCceEEEEEecccCCCccceEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCccccHHHHHHHH
Confidence 99999999999988 56777899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcC-CcccCCCCccchhhhHHHHHhHHhc
Q psy15216 2367 NFFK-TTLLTSIDPDKAVVFGAAIQANFLS 2395 (2602)
Q Consensus 2367 ~~f~-~~~~~~~~p~~aVa~GAa~~a~~~~ 2395 (2602)
++|+ .++..+.||++|||+|||++|+.++
T Consensus 164 ~~f~~~~i~~~~~p~~aVa~GaA~~aa~ls 193 (193)
T d1bupa2 164 DFFNGKELNKSINPDEAVAYGAAVQAAILS 193 (193)
T ss_dssp HHTTTCCCBCSSCGGGHHHHHHHHHHHHHC
T ss_pred HHcCCCCCCCCCChHHHHHHHHHHHHHhhC
Confidence 9996 5677889999999999999999875
|
| >d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Escherichia coli, gene dnaK [TaxId: 562]
Probab=99.96 E-value=3.3e-29 Score=286.97 Aligned_cols=182 Identities=38% Similarity=0.615 Sum_probs=163.5
Q ss_pred CceEEEEEeCCceEEEEEEEEe----CCEEEEEEEecCCCCchhHHHHHHHHHHHHHHhhhcC------ChhHHHHHHHH
Q psy15216 2213 EGIFAVYDLGGGTFDISILKFK----NGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKL------SYKDVNILMIK 2282 (2602)
Q Consensus 2213 ~~~vlV~D~GGGT~Dvsv~~~~----~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~~~------~~~~~~~l~~~ 2282 (2602)
+++|||||+||||||+|++++. ++.++++++.++..+||++||++|++|+.+++ .+++ ....+.+|+.+
T Consensus 2 ~~~vlV~D~GggT~Dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~~D~~l~~~~~~~~-~~~~~~~~~~~~~~~~rL~~~ 80 (198)
T d1dkgd2 2 NRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEF-KKDQGIDLRNDPLAMQRLKEA 80 (198)
T ss_dssp EEEEEEEEECSSCEEEEEEEEEC----CCCEEEEEEEESSCSHHHHHHHHHHHHHHHH-HHHHCCCSTTCHHHHHHHHHH
T ss_pred CeEEEEEEcCCCcEEEEEEEEEccCCCcEEEEEEecCCCCCCHHHHHHHHHHHHHHHH-HHHhCCCCccCHHHHHHHHHH
Confidence 3579999999999999999997 45689999999999999999999999999874 3322 23567789999
Q ss_pred HHHHHHHhcccceEEEEEEe-----cCCceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccceEEEEeCccc
Q psy15216 2283 SREIKELLSYQSSVKLNVKL-----SDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTR 2357 (2602)
Q Consensus 2283 ~e~~K~~ls~~~~~~~~i~~-----~~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~ 2357 (2602)
||++|+.||...+++++++. .++.+++++|||++|+++++|+++++.++|.++|+++++++.+|+.|+||||+||
T Consensus 81 ~e~~K~~Ls~~~~~~i~~~~~~~~~~~~~~~~~~itr~~~~~~~~~~~~~~~~~i~~~l~~a~~~~~~Id~v~lvGG~sr 160 (198)
T d1dkgd2 81 AEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTR 160 (198)
T ss_dssp HHHHHHHTTSSSEEEEEEEEEEEETTEEEEEEEEEEHHHHHHHSHHHHHHHHHHHHHHHHTTTCCTTTCCEEEEESGGGG
T ss_pred HHHHHHHhcCCCeEEEEEeeeecCCCCCceEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHCcEEEEEcCccC
Confidence 99999999999998888872 2334678999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhcCCcccCCCCccchhhhHHHHHhHHhc
Q psy15216 2358 MKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFLS 2395 (2602)
Q Consensus 2358 ~p~v~~~l~~~f~~~~~~~~~p~~aVa~GAa~~a~~~~ 2395 (2602)
+|+|+++|++.|+.++..+.||++|||+|||++|+.+|
T Consensus 161 ~p~l~~~i~~~f~~~~~~~~~p~~aVa~GAa~~aa~lS 198 (198)
T d1dkgd2 161 MPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLT 198 (198)
T ss_dssp SHHHHHHHHHHHSSCCBCSSCTTTHHHHHHHHHTTTTC
T ss_pred CHHHHHHHHHHHCCCCCCCCChHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999998765
|
| >d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.96 E-value=1.8e-29 Score=286.76 Aligned_cols=175 Identities=39% Similarity=0.600 Sum_probs=156.3
Q ss_pred eEEEEEcCcccEEEEEEECCeEEEEeCCCCCccccEEEEEecCCcEEecHHHHhhhccCCCCchhhhhhhcCCCCCCCC-
Q psy15216 2034 VSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNIN- 2112 (2602)
Q Consensus 2034 ~vvGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~~~~~~vG~~A~~~~~~~p~~~~~~~K~~lg~~~~~~~- 2112 (2602)
.|||||||||||+||++++|+++++.|.+|++.+||+|+|. ++++++|..|+.+...+|.++++++|||||+++.+..
T Consensus 2 ~vvGIDfGTt~s~va~~~~g~~~ii~~~~~~r~~Ps~i~~~-~~~~~vG~~a~~~~~~~p~~~i~~~KrllG~~~~~~~~ 80 (185)
T d1bupa1 2 PAVGIDLGSTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFDDAVV 80 (185)
T ss_dssp CCEEEEECSSEEEEEEEETTEEEECCCTTSCSSEECCEEEC-SSCEEETHHHHTTTTTCGGGEECCHHHHTTCCTTCHHH
T ss_pred CEEEEEcChhcEEEEEEECCEEEEEECCCCCccceeEEEEC-CCcEEEeechHHHhhcCcccchhHHHHHhCCCCccHHH
Confidence 38999999999999999999999999999999999999996 5678999999999999999999999999999887642
Q ss_pred ---CCCCCeeeecCCCceEEEe----cCceeCHHHHHHHHHHHHHHHHHHhhccccceEEEeeCCCCCHHHHHHHHHHHH
Q psy15216 2113 ---TNSFPYDFQNKFGMLHIKT----ISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAK 2185 (2602)
Q Consensus 2113 ---~~~~~~~~~~~~g~~~~~~----~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~l~~Aa~ 2185 (2602)
.+.+++.+..+.+...... ....++|+++++++|++|++.++.+++.++.++|||||++|++.||++|++||+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~el~a~~l~~l~~~a~~~~~~~~~~~VitvPa~f~~~qr~~~~~Aa~ 160 (185)
T d1bupa1 81 QSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGT 160 (185)
T ss_dssp HHHHTTCSSEEEEETTEEEEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHTSCCCEEEEEECTTCCHHHHHHHHHHHH
T ss_pred HHHhhcCCceEEcCCCCccEEEEEcCCceEEcHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCHHHHHHHHHHHH
Confidence 3456777766555444332 234689999999999999999999999999999999999999999999999999
Q ss_pred HcCCceeEeechhHHHHHHhhhcc
Q psy15216 2186 LAGLNVLRLLNEPTSAAIAYKLDK 2209 (2602)
Q Consensus 2186 ~AGl~~~~li~EP~AAAl~y~~~~ 2209 (2602)
.|||++++||+||+|||++|++++
T Consensus 161 ~AGl~~~~li~EP~AAAl~Ygldk 184 (185)
T d1bupa1 161 IAGLNVLRIINEPTAAAIAYGLDK 184 (185)
T ss_dssp HTTCEEEEEEEHHHHHHHHTTTTS
T ss_pred HcCCCeEEEEcCHHHHHHHhcccC
Confidence 999999999999999999998764
|
| >d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Kynureninase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.95 E-value=9.8e-28 Score=311.46 Aligned_cols=340 Identities=15% Similarity=0.118 Sum_probs=259.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhccc
Q psy15216 1 MDYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAH 80 (2602)
Q Consensus 1 Ld~a~~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~ 80 (2602)
||+++++|+|..|++++.+++...++++.. .+..+..+.+.++++|+++|+++|+++++|+|++|+|++++.++.+...
T Consensus 31 Ld~as~g~~p~~v~~a~~~~l~~~~~~~~~-~~~~~~~~~~~~e~~R~~iA~llga~~~ei~~~~~~T~~~~~~~~~~~~ 109 (404)
T d1qz9a_ 31 LDGNSLGARPVAALARAQAVIAEEWGNGLI-RSWNSAGWRDLSERLGNRLATLIGARDGEVVVTDTTSINLFKVLSAALR 109 (404)
T ss_dssp CCTTTSCCCBTTHHHHHHHHHHTCCCCCGG-GHHHHTSGGGHHHHHHHHHHTTTTCCTTSEEECSCHHHHHHHHHHHHHH
T ss_pred cCCcccccCCHHHHHHHHHHHHHHhcccCc-ccccchhHHHHHHHHHHHHHHHhCCCCCcEEEecCchHHHHHHhhhhhh
Confidence 799999999999999999999877777653 2233334446788999999999999999999999999999988764421
Q ss_pred --ccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHH
Q psy15216 81 --FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEI 158 (2602)
Q Consensus 81 --~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I 158 (2602)
....+++.|++++.+|++....+... +.++..++.+..+..+++.++++++++|++|+++|++|.||.++|+++|
T Consensus 110 ~~~~~~~~~~vi~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~T~lV~i~~v~~~tG~~~pv~~i 186 (404)
T d1qz9a_ 110 VQATRSPERRVIVTETSNFPTDLYIAEG---LADMLQQGYTLRLVDSPEELPQAIDQDTAVVMLTHVNYKTGYMHDMQAL 186 (404)
T ss_dssp HHHHHSTTCCEEEEETTSCHHHHHHHHH---HHHHHCSSCEEEEESSGGGHHHHCSTTEEEEEEESBCTTTCBBCCHHHH
T ss_pred hhcccCCCcEEEEeccccchHHHHHHhh---hheeeeeceeccccccchhHHHhcCCCceEEEEecccccccceecHHHH
Confidence 12367888888888888766555443 3334444444456678999999999999999999999999999999999
Q ss_pred HHHHHhcCCEEEEecccccccccccCCCCCccEEEeccccc-cCCCC-cEEEEEecCCCCcccceecCCCc---------
Q psy15216 159 GELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKI-YGPKG-IGALYIRRNPRTRIEAQIHGGGH--------- 227 (2602)
Q Consensus 159 ~~la~~~g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K~-~Gp~G-~G~l~~~~~~~~~l~~~~~g~~~--------- 227 (2602)
+++||++|+++++|++|++|..++++..+++|++++|+||+ ++|+| +|+++.+++..+.+++...+++.
T Consensus 187 ~~~~~~~~~~~~vD~~q~~g~~~~~~~~~~~d~~~~s~~K~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (404)
T d1qz9a_ 187 TALSHECGALAIWDLAHSAGAVPVDLHQAGADYAIGCTYKYLNGGPGSQAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEP 266 (404)
T ss_dssp HHHHHHHTCEEEEECTTTTTTSCCCHHHHTCSEEEECSSSTTCCCTTCCCEEEECTTTTTTSCCSCCCGGGBCTTSCCCS
T ss_pred hccccccccceeEEeeccccccccccccccceEEEEechhhcccCCceEEEEEechhhhhhCCccccccCCccccccccc
Confidence 99999999999999999999999999999999999999994 45555 79999998887777654433321
Q ss_pred -------cccccccCcchhHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHH---HHHhhccCceEEeCCCCCCCCceEEE
Q psy15216 228 -------EYGLRSGTLATHQIVGMGEAFRLAR-IEMKEELKRILFLQKRLY---NGLMESIEEIYINGDMNNRIPHNLNI 296 (2602)
Q Consensus 228 -------~~~~~~gt~~~~~~~al~~al~~~~-~~~~~~~~~~~~l~~~l~---~~L~~~~~g~~l~~~~~~~~~~~~~~ 296 (2602)
...++.++++..+...+..++.... .+...+.++...+...+. ..+.. .+++++++|.... .....+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~-~~~~~i~~p~~~~-~r~~~v 344 (404)
T d1qz9a_ 267 RYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQRCA-AHELTLVTPREHA-KRGSHV 344 (404)
T ss_dssp SCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHT-TSCCEECSCSSGG-GBCSEE
T ss_pred cccccccchhhhhhhccchhHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHhhcc-CCCEEEECCCCcc-ceeeEE
Confidence 2345668888888888888877443 334555555555554444 44444 5899998765432 223345
Q ss_pred EEcccChhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecC-CCCCHHHHHHHHHHHHhh
Q psy15216 297 SFNFIEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIG-RFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 297 ~~~~~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~-~~~t~edid~li~~L~~~ 369 (2602)
+|...++.++.+.| +||.+. .+. ++.||||++ +|||++||++++++|++.
T Consensus 345 sf~~~~~~~v~~~L~~~gi~~~---~r~--------------------~~~lRiS~~h~ynt~~did~~~~~L~~v 397 (404)
T d1qz9a_ 345 SFEHPEGYAVIQALIDRGVIGD---YRE--------------------PRIMRFGFTPLYTTFTEVWDAVQILGEI 397 (404)
T ss_dssp EEECTTHHHHHHHHHTTTEECE---EET--------------------TTEEEEECCTTTCCHHHHHHHHHHHHHH
T ss_pred EEecCCHHHHHHHHHHCCCEEe---ecC--------------------CCeEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 66666788888888 677543 221 278999995 689999999999999975
|
| >d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Kynureninase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.94 E-value=6e-27 Score=303.95 Aligned_cols=347 Identities=15% Similarity=0.117 Sum_probs=261.5
Q ss_pred eeceeeeccCC-CCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHH
Q psy15216 1391 RPYTNIVFKDA-TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNL 1469 (2602)
Q Consensus 1391 iP~~~v~L~~~-~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~ 1469 (2602)
.|...+|||++ .++.|..+++++.+++.+.+++++. .+..+..+.+.++++|+.+++++|+++++++||+|+|++++.
T Consensus 24 ~~~~~iYLd~as~g~~p~~v~~a~~~~l~~~~~~~~~-~~~~~~~~~~~~e~~R~~iA~llga~~~ei~~~~~~T~~~~~ 102 (404)
T d1qz9a_ 24 LPEGVIYLDGNSLGARPVAALARAQAVIAEEWGNGLI-RSWNSAGWRDLSERLGNRLATLIGARDGEVVVTDTTSINLFK 102 (404)
T ss_dssp CCTTCEECCTTTSCCCBTTHHHHHHHHHHTCCCCCGG-GHHHHTSGGGHHHHHHHHHHTTTTCCTTSEEECSCHHHHHHH
T ss_pred CCCCCEEcCCcccccCCHHHHHHHHHHHHHHhcccCc-ccccchhHHHHHHHHHHHHHHHhCCCCCcEEEecCchHHHHH
Confidence 46678999864 4788999999999999887777754 233333445678899999999999999999999999999998
Q ss_pred HHHhhhh--hhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccCCceEEEEecccccccc
Q psy15216 1470 AIKGAAH--FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGV 1547 (2602)
Q Consensus 1470 al~~l~~--~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~ 1547 (2602)
++.+... ..+.++++|++++.+|++....+... +.++..++.+.++..+++.++++|+++|++|+++|++|.||.
T Consensus 103 ~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~T~lV~i~~v~~~tG~ 179 (404)
T d1qz9a_ 103 VLSAALRVQATRSPERRVIVTETSNFPTDLYIAEG---LADMLQQGYTLRLVDSPEELPQAIDQDTAVVMLTHVNYKTGY 179 (404)
T ss_dssp HHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHH---HHHHHCSSCEEEEESSGGGHHHHCSTTEEEEEEESBCTTTCB
T ss_pred HhhhhhhhhcccCCCcEEEEeccccchHHHHHHhh---hheeeeeceeccccccchhHHHhcCCCceEEEEecccccccc
Confidence 8765431 12468899999988888766555443 233334444445667899999999999999999999999999
Q ss_pred ccChHHHHHHhhhcCCEEEEecccccCcccccCCCCCccEEEEcccc-ccCCCc-eEEEEEecCCCCccccccccCCc--
Q psy15216 1548 IQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKG-IGALYIRRNPRTRIEAQIHGGGH-- 1623 (2602)
Q Consensus 1548 ~~~l~~I~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K-~~gp~G-~G~l~~~~~~~~~l~~~~~g~~~-- 1623 (2602)
++|+++|+++|+++|+++++|++|++|..++++..+++|++++|+|| +++|+| +|+++.+++..+.+.+...+++.
T Consensus 180 ~~pv~~i~~~~~~~~~~~~vD~~q~~g~~~~~~~~~~~d~~~~s~~K~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~ 259 (404)
T d1qz9a_ 180 MHDMQALTALSHECGALAIWDLAHSAGAVPVDLHQAGADYAIGCTYKYLNGGPGSQAFVWVSPQLCDLVPQPLSGWFGHS 259 (404)
T ss_dssp BCCHHHHHHHHHHHTCEEEEECTTTTTTSCCCHHHHTCSEEEECSSSTTCCCTTCCCEEEECTTTTTTSCCSCCCGGGBC
T ss_pred eecHHHHhccccccccceeEEeeccccccccccccccceEEEEechhhcccCCceEEEEEechhhhhhCCccccccCCcc
Confidence 99999999999999999999999999999999999999999999999 445555 79999998877766543332221
Q ss_pred --------------cccCCCCCcchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH---HHHHHhhcCCcEEEeCCCCCC
Q psy15216 1624 --------------EYGLRSGTLATHQIVGMGEAFRLAR-IEMKEELKRILFLQKR---LYNGLMESIEEIYINGDMNNR 1685 (2602)
Q Consensus 1624 --------------~~~~~~gt~~~~~~~al~~aL~~~~-~~~~~~~~~~~~l~~~---l~~~L~~~~~gl~i~~~~~~~ 1685 (2602)
...++.++++...+..+..++.... .+...+.++...+... +.+.+.. .+++.+.++....
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~-~~~~~i~~p~~~~ 338 (404)
T d1qz9a_ 260 RQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQRCA-AHELTLVTPREHA 338 (404)
T ss_dssp TTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHT-TSCCEECSCSSGG
T ss_pred ccccccccccccccchhhhhhhccchhHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHhhcc-CCCEEEECCCCcc
Confidence 2345678888888888888877443 3344444444444444 4444444 6889998765431
Q ss_pred CCceEEEEEecCCcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecC-CCCCHHHHHHHHHHH
Q psy15216 1686 IPHNLNISFNFIEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIG-RFTTEKEIDFTIKLL 1762 (2602)
Q Consensus 1686 ~~~~~~~~~~~~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~-~~~t~edid~li~~L 1762 (2602)
.....++|...++.++...| +||.+. .+. .+.||||++ .|||.+||++++++|
T Consensus 339 -~r~~~vsf~~~~~~~v~~~L~~~gi~~~---~r~--------------------~~~lRiS~~h~ynt~~did~~~~~L 394 (404)
T d1qz9a_ 339 -KRGSHVSFEHPEGYAVIQALIDRGVIGD---YRE--------------------PRIMRFGFTPLYTTFTEVWDAVQIL 394 (404)
T ss_dssp -GBCSEEEEECTTHHHHHHHHHTTTEECE---EET--------------------TTEEEEECCTTTCCHHHHHHHHHHH
T ss_pred -ceeeEEEEecCCHHHHHHHHHHCCCEEe---ecC--------------------CCeEEEECCCCCCCHHHHHHHHHHH
Confidence 22334566666777887777 677542 221 278999996 689999999999999
Q ss_pred HHhh
Q psy15216 1763 KMKE 1766 (2602)
Q Consensus 1763 ~~~~ 1766 (2602)
++..
T Consensus 395 ~~vl 398 (404)
T d1qz9a_ 395 GEIL 398 (404)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9854
|
| >d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=2.2e-26 Score=296.85 Aligned_cols=330 Identities=13% Similarity=0.207 Sum_probs=264.4
Q ss_pred CCCCCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCC-cEEEeCCHHHHHHHHHHhccccc
Q psy15216 4 SATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPR-EIIWTSGATESNNLAIKGAAHFY 82 (2602)
Q Consensus 4 a~~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~-~Iv~t~g~T~al~~~~~~l~~~~ 82 (2602)
.|-++.|+.|+++|.... .+..+..+.+.++++|+.+++++|++.+ .|+|++|+|++++.++.++.
T Consensus 25 pGP~~~~~~Vl~am~~~~----------i~HRs~~f~~i~~ea~~~l~~llg~~~~~~ii~~gsgT~a~~~~i~~l~--- 91 (388)
T d1h0ca_ 25 PGPSNLPPRIMAAGGLQM----------IGSMSKDMYQIMDEIKEGIQYVFQTRNPLTLVISGSGHCALEAALVNVL--- 91 (388)
T ss_dssp SSCCCCCHHHHHHHTCCC----------CCTTSHHHHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHHC---
T ss_pred CCCCCCCHHHHHHhCcCC----------CCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHhh---
Confidence 455577888877764211 1224667788999999999999999644 69999999999999999998
Q ss_pred ccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhcc-CCceEEEEecccCcccccccHHHHHHH
Q psy15216 83 KKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKIC-SDTILVSVMLVNNEIGVIQPILEIGEL 161 (2602)
Q Consensus 83 ~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~-~~tklv~i~~~~npTG~~~~l~~I~~l 161 (2602)
.+|+.+++...+|.+.. ++......+..+..+..++...+|.+.+++.+. +++++++++|.+|.||.+.|+++|+++
T Consensus 92 -~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~n~tG~i~pi~~i~~~ 169 (388)
T d1h0ca_ 92 -EPGDSFLVGANGIWGQR-AVDIGERIGARVHPMTKDPGGHYTLQEVEEGLAQHKPVLLFLTHGESSTGVLQPLDGFGEL 169 (388)
T ss_dssp -CSSCCEEECBSSHHHHH-HHHHHHHHC--CBCCBCCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHH
T ss_pred -ccCCceeeecccceeee-eccccccccccccccccCCccccchHHHHHHhccCCcceEEEeeeeeccccccCHHHHHHH
Confidence 79999999998888864 444455567788888878788889888877664 589999999999999999999999999
Q ss_pred HHhcCCEEEEecccccccccccCCCCCccEEEecccc-ccCCCCcEEEEEecCCCCcccceecCC---------------
Q psy15216 162 CRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGG--------------- 225 (2602)
Q Consensus 162 a~~~g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K-~~Gp~G~G~l~~~~~~~~~l~~~~~g~--------------- 225 (2602)
||+||+++++|++|++|..+++++++++|++++|.|| ++||.|+|+++++++.++.+.+...++
T Consensus 170 ~~~~g~~~~vD~~qs~g~~~~d~~~~~~D~~~~s~~K~~~gp~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (388)
T d1h0ca_ 170 CHRYKCLLLVDSVASLGGTPLYMDRQGIDILYSGSQKALNAPPGTSLISFSDKAKKKMYSRKTKPFSFYLDIKWLANFWG 249 (388)
T ss_dssp HHTTTCEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCTTCEEEEECHHHHHHHTTCSSCCSCSTTCHHHHHHHTT
T ss_pred hhcccccceeccccccccccccccccccceecccccccccCCCceEEEeecHHHHHhhhhccccccccccccchhhhhhh
Confidence 9999999999999999999999999999999999999 557888999999987655443322111
Q ss_pred -CccccccccCcchhHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHhhccCceEEe-CCCCCCCCceEEEEEc-cc
Q psy15216 226 -GHEYGLRSGTLATHQIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIEEIYIN-GDMNNRIPHNLNISFN-FI 301 (2602)
Q Consensus 226 -~~~~~~~~gt~~~~~~~al~~al~~~-~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~-~~~~~~~~~~~~~~~~-~~ 301 (2602)
....++..+|++...++++.+++++. ..+++.+.++..++.+++++.+.. .++.+. ..+..+.+.++.|.++ +.
T Consensus 250 ~~~~~~~~~~t~~~~~~~~~~~al~~~~~~g~~~~~~~~~~l~~~l~~~~~~--~g~~~~~~~~~~rs~~i~~~~~p~~~ 327 (388)
T d1h0ca_ 250 CDDQPRMYHHTIPVISLYSLRESLALIAEQGLENSWRQHREAAAYLHGRLQA--LGLQLFVKDPALRLPTVTTVAVPAGY 327 (388)
T ss_dssp CSSSCCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH--HTCCBSSCSGGGBCTTEEEEECCTTC
T ss_pred hccccccccccccHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHhh--cCcccccCCHHHcCCeEEEEECCCCC
Confidence 12334567899999999999999854 456899999999999999999977 344443 3445566777778885 46
Q ss_pred ChhHHHHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEe-cCCCCCHHHHHHHHHHHHhh
Q psy15216 302 EGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFT-IGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 302 ~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis-~~~~~t~edid~li~~L~~~ 369 (2602)
+..++...| ++|.++.|..|..+ +.|||| +|+++|.+|||+++++|++.
T Consensus 328 ~~~~~~~~L~~~~gI~v~~G~~~~~~-------------------~~iRis~~g~~~t~edid~li~aL~~~ 380 (388)
T d1h0ca_ 328 DWRDIVSYVIDHFDIEIMGGLGPSTG-------------------KVLRIGLLGCNATRENVDRVTEALRAA 380 (388)
T ss_dssp CHHHHHHHHHHHHCEECEECCGGGTT-------------------TEEEEECCGGGCSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCEEEeCCchhhcC-------------------CEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 778887776 49999988776543 789999 78999999999999999974
|
| >d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 2-aminoethylphosphonate transaminase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.94 E-value=1e-25 Score=287.61 Aligned_cols=329 Identities=14% Similarity=0.122 Sum_probs=245.7
Q ss_pred CCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCc--EEEeCCHHHHHHHHHHhccccccc
Q psy15216 7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE--IIWTSGATESNNLAIKGAAHFYKK 84 (2602)
Q Consensus 7 ~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~--Iv~t~g~T~al~~~~~~l~~~~~~ 84 (2602)
.+.|+.|++++.+ .+ .+..+..+...++++|+.+++++|+++++ +++++|+|++++.++.++. ..
T Consensus 9 ~~~~~~V~~A~~~----~~------~~~~~~~~~~~~~~~r~~l~~l~~~~~~~~~i~~t~s~T~~~~~~~~~l~---~~ 75 (361)
T d1m32a_ 9 LTTSRTVKEAMLF----DS------CTWDDDYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSAL---GP 75 (361)
T ss_dssp CCCCHHHHHTTCC----CC------CTTSHHHHTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHSC---CT
T ss_pred CCCCHHHHHHhhh----hc------cCCCcHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCHHHHHHHHHHHhh---hh
Confidence 3566666665432 11 12334455678899999999999998775 7889999999999999998 33
Q ss_pred CCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCC--CCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHH
Q psy15216 85 RGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELC 162 (2602)
Q Consensus 85 ~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la 162 (2602)
.++.+++...+|+.....+.. ..+.....+.... ....+.+.......+++++++++|.+|.||.+.|+++|+++|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tG~~~~i~~i~~~~ 153 (361)
T d1m32a_ 76 QDKVLIVSNGAYGARMVEMAG--LMGIAHHAYDCGEVARPDVQAIDAILNADPTISHIAMVHSETTTGMLNPIDEVGALA 153 (361)
T ss_dssp TCCEEEEESSHHHHHHHHHHH--HHTCCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECCHHHHHHHH
T ss_pred ccccceeeehhhhhhHHHHhh--hhhcccccccccccCCccchhhHHHHHhccCccceEEEeeecccccchhhhhhhhhh
Confidence 344555555444443333322 2244444443333 333455556666788999999999999999999999999999
Q ss_pred HhcCCEEEEecccccccccccCCCCCccEEEecccc-ccCCCCcEEEEEecCCCCcccceecCCCc-----------ccc
Q psy15216 163 RSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGH-----------EYG 230 (2602)
Q Consensus 163 ~~~g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K-~~Gp~G~G~l~~~~~~~~~l~~~~~g~~~-----------~~~ 230 (2602)
|+||+++++|++|++|..++|+.++++|++++|+|| ++||+|+|+++++++..++..+...++.. ...
T Consensus 154 ~~~g~~~~vDa~qs~G~~~~d~~~~~~D~~~~s~~K~l~gp~G~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (361)
T d1m32a_ 154 HRYGKTYIVDAMSSFGGIPMDIAALHIDYLISSANKCIQGVPGFAFVIAREQKLAACKGHSRSLSLDLYAQWRCMEDNHG 233 (361)
T ss_dssp HHHTCEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCSSEEEEEEEHHHHTTCTTCCSCSTTCHHHHHHHHHHTTT
T ss_pred cccceeeEeecccccCcccccccccccceEEeeecccccCCCCceEEEechhhhhhhccccccccccchhhhcccccccc
Confidence 999999999999999999999999999999999999 56899999999999988888877766543 123
Q ss_pred ccccCcchhHHHHHHHHHHH-HHHh-HHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc---cChhH
Q psy15216 231 LRSGTLATHQIVGMGEAFRL-ARIE-MKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF---IEGES 305 (2602)
Q Consensus 231 ~~~gt~~~~~~~al~~al~~-~~~~-~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~---~~~~~ 305 (2602)
...+|++.....++..++.. ..++ .+....+...+++.+++.+.. .++.+..++..+.+.++.+..|. .+..+
T Consensus 234 ~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~~~~~~rs~~v~~~~~p~~~~~~~~~ 311 (361)
T d1m32a_ 234 KWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRA--LGFNTLLDDELHSPIITAFYSPEDPQYRFSE 311 (361)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH--TTCCBSSCGGGBCSSEEEEECCCCTTCCHHH
T ss_pred ccCCCCCchhhhHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHhh--cCCcccCChhhcCCcEEEEECCCCCCCCHHH
Confidence 34578899888888888873 3343 456667778888888888876 56666666666666666666653 34567
Q ss_pred HHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhhhhh
Q psy15216 306 LLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKEFF 372 (2602)
Q Consensus 306 ~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~~~~ 372 (2602)
+.+.| ++|.+.+|..+.+ +++|||+..|++++||++++++|++...|
T Consensus 312 ~~~~l~~~gi~i~~G~~~~~--------------------~~~Ris~~g~~~~~di~~lv~al~~~L~~ 360 (361)
T d1m32a_ 312 FYRRLKEQGFVIYPGKVSQS--------------------DCFRIGNIGEVYAADITALLTAIRTAMYW 360 (361)
T ss_dssp HHHHHHHTTEECEECCCSSS--------------------CEEEEECCSSCCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHCCcEEECCCcCCC--------------------CEEEEeCCCCCCHHHHHHHHHHHHHHcCC
Confidence 77777 8999887754432 78999976689999999999999987555
|
| >d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=3.2e-26 Score=295.27 Aligned_cols=338 Identities=13% Similarity=0.199 Sum_probs=267.0
Q ss_pred eeceeeeccCCCCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCC-cEEEeCCHHHHHHH
Q psy15216 1391 RPYTNIVFKDATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPR-EIIWTSGATESNNL 1469 (2602)
Q Consensus 1391 iP~~~v~L~~~~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~-~iv~t~gaT~al~~ 1469 (2602)
+|.. ..+....++.++.+++++... . .++.+..+.++++++|+.+++++|++.+ .|+|++|+|++++.
T Consensus 17 ~~~~-~l~~pGP~~~~~~Vl~am~~~--------~--i~HRs~~f~~i~~ea~~~l~~llg~~~~~~ii~~gsgT~a~~~ 85 (388)
T d1h0ca_ 17 IPNQ-LLLGPGPSNLPPRIMAAGGLQ--------M--IGSMSKDMYQIMDEIKEGIQYVFQTRNPLTLVISGSGHCALEA 85 (388)
T ss_dssp CCCC-EECSSSCCCCCHHHHHHHTCC--------C--CCTTSHHHHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHH
T ss_pred CCcC-ccccCCCCCCCHHHHHHhCcC--------C--CCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHH
Confidence 3543 445566778888888877421 1 1234678889999999999999999644 58999999999999
Q ss_pred HHHhhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhcc-CCceEEEEeccccccccc
Q psy15216 1470 AIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKIC-SDTILVSVMLVNNEIGVI 1548 (2602)
Q Consensus 1470 al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~-~~t~lv~l~~~~n~tG~~ 1548 (2602)
++.++. .+|+++++...+|.+.... ..+...+..+..+..++...+|.+++++.+. +++++++++|.+|.||.+
T Consensus 86 ~i~~l~----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~n~tG~i 160 (388)
T d1h0ca_ 86 ALVNVL----EPGDSFLVGANGIWGQRAV-DIGERIGARVHPMTKDPGGHYTLQEVEEGLAQHKPVLLFLTHGESSTGVL 160 (388)
T ss_dssp HHHHHC----CSSCCEEECBSSHHHHHHH-HHHHHHC--CBCCBCCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEE
T ss_pred HHHHhh----ccCCceeeecccceeeeec-cccccccccccccccCCccccchHHHHHHhccCCcceEEEeeeeeccccc
Confidence 999987 8999999999988886543 3344457777777777777889888877664 689999999999999999
Q ss_pred cChHHHHHHhhhcCCEEEEecccccCcccccCCCCCccEEEEcccc-ccCCCceEEEEEecCCCCcccccccc-------
Q psy15216 1549 QPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHG------- 1620 (2602)
Q Consensus 1549 ~~l~~I~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K-~~gp~G~G~l~~~~~~~~~l~~~~~g------- 1620 (2602)
+|+++|.++|++||+++++|++|++|..++++.++++|++++|.|| ++||.|+|+++++++.++.+.+...+
T Consensus 161 ~pi~~i~~~~~~~g~~~~vD~~qs~g~~~~d~~~~~~D~~~~s~~K~~~gp~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (388)
T d1h0ca_ 161 QPLDGFGELCHRYKCLLLVDSVASLGGTPLYMDRQGIDILYSGSQKALNAPPGTSLISFSDKAKKKMYSRKTKPFSFYLD 240 (388)
T ss_dssp CCCTTHHHHHHTTTCEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCTTCEEEEECHHHHHHHTTCSSCCSCSTTC
T ss_pred cCHHHHHHHhhcccccceeccccccccccccccccccceecccccccccCCCceEEEeecHHHHHhhhhccccccccccc
Confidence 9999999999999999999999999999999999999999999999 56788999999987654433221111
Q ss_pred ---------CCccccCCCCCcchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeC-CCCCCCCce
Q psy15216 1621 ---------GGHEYGLRSGTLATHQIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIEEIYING-DMNNRIPHN 1689 (2602)
Q Consensus 1621 ---------~~~~~~~~~gt~~~~~~~al~~aL~~~-~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~-~~~~~~~~~ 1689 (2602)
.....++..+|++...++++.+++.+. ..+++.+.++...+.+++++.+.. .++.+.. .+..+.+.+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~al~~~~~~g~~~~~~~~~~l~~~l~~~~~~--~g~~~~~~~~~~rs~~i 318 (388)
T d1h0ca_ 241 IKWLANFWGCDDQPRMYHHTIPVISLYSLRESLALIAEQGLENSWRQHREAAAYLHGRLQA--LGLQLFVKDPALRLPTV 318 (388)
T ss_dssp HHHHHHHTTCSSSCCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH--HTCCBSSCSGGGBCTTE
T ss_pred cchhhhhhhhccccccccccccHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHhh--cCcccccCCHHHcCCeE
Confidence 122345667899999999999999854 456899999999999999999987 3444433 334456777
Q ss_pred EEEEEe-cCCcHHHHHhc---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEe-cCCCCCHHHHHHHHHHHHH
Q psy15216 1690 LNISFN-FIEGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFT-IGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1690 ~~~~~~-~~~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls-~~~~~t~edid~li~~L~~ 1764 (2602)
+.|.+| +.+..++...| ++|.++.|..+... +.|||| +++++|.+|||+++++|++
T Consensus 319 ~~~~~p~~~~~~~~~~~L~~~~gI~v~~G~~~~~~-------------------~~iRis~~g~~~t~edid~li~aL~~ 379 (388)
T d1h0ca_ 319 TTVAVPAGYDWRDIVSYVIDHFDIEIMGGLGPSTG-------------------KVLRIGLLGCNATRENVDRVTEALRA 379 (388)
T ss_dssp EEEECCTTCCHHHHHHHHHHHHCEECEECCGGGTT-------------------TEEEEECCGGGCSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhcCCEEEeCCchhhcC-------------------CEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 778876 46677777666 59999988776543 789999 7889999999999999998
Q ss_pred h
Q psy15216 1765 K 1765 (2602)
Q Consensus 1765 ~ 1765 (2602)
.
T Consensus 380 ~ 380 (388)
T d1h0ca_ 380 A 380 (388)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 2-aminoethylphosphonate transaminase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.93 E-value=1.7e-25 Score=285.57 Aligned_cols=330 Identities=14% Similarity=0.127 Sum_probs=246.4
Q ss_pred CCCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCc--EEEeCCHHHHHHHHHHhhhhhh
Q psy15216 1401 ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE--IIWTSGATESNNLAIKGAAHFY 1478 (2602)
Q Consensus 1401 ~~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~--iv~t~gaT~al~~al~~l~~~~ 1478 (2602)
...+.++.+++++.+. + .++.+..+.+.++++|+.+++++|+++++ +++|+|+|+++++++.++.
T Consensus 7 GP~~~~~~V~~A~~~~----~------~~~~~~~~~~~~~~~r~~l~~l~~~~~~~~~i~~t~s~T~~~~~~~~~l~--- 73 (361)
T d1m32a_ 7 GPLTTSRTVKEAMLFD----S------CTWDDDYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSAL--- 73 (361)
T ss_dssp SSCCCCHHHHHTTCCC----C------CTTSHHHHTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHSC---
T ss_pred CCCCCCHHHHHHhhhh----c------cCCCcHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCHHHHHHHHHHHhh---
Confidence 3456777777665321 1 12335566778899999999999997765 7788999999999999987
Q ss_pred ccCCCEEEEc-CCCCcchHHHHHHHHhCCcEEEEeccCC--CCCcChhHHHhhccCCceEEEEeccccccccccChHHHH
Q psy15216 1479 KKRGKHIITV-QTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIG 1555 (2602)
Q Consensus 1479 ~~~gd~Vlv~-~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~ 1555 (2602)
.+++.+++. ...|+.....+.... +.....+.... ....+.+.....+.+++++++++|.+|.||...|+++|.
T Consensus 74 -~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tG~~~~i~~i~ 150 (361)
T d1m32a_ 74 -GPQDKVLIVSNGAYGARMVEMAGLM--GIAHHAYDCGEVARPDVQAIDAILNADPTISHIAMVHSETTTGMLNPIDEVG 150 (361)
T ss_dssp -CTTCCEEEEESSHHHHHHHHHHHHH--TCCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECCHHHHH
T ss_pred -hhccccceeeehhhhhhHHHHhhhh--hcccccccccccCCccchhhHHHHHhccCccceEEEeeecccccchhhhhhh
Confidence 455555444 444444333333322 33444444333 333455666667789999999999999999999999999
Q ss_pred HHhhhcCCEEEEecccccCcccccCCCCCccEEEEcccc-ccCCCceEEEEEecCCCCccccccccCCc-----------
Q psy15216 1556 ELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGH----------- 1623 (2602)
Q Consensus 1556 ~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K-~~gp~G~G~l~~~~~~~~~l~~~~~g~~~----------- 1623 (2602)
++|++||+++++|++|++|..++++.++++|++++|+|| ++||+|+|+++++++..+...+...++..
T Consensus 151 ~~~~~~g~~~~vDa~qs~G~~~~d~~~~~~D~~~~s~~K~l~gp~G~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (361)
T d1m32a_ 151 ALAHRYGKTYIVDAMSSFGGIPMDIAALHIDYLISSANKCIQGVPGFAFVIAREQKLAACKGHSRSLSLDLYAQWRCMED 230 (361)
T ss_dssp HHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCSSEEEEEEEHHHHTTCTTCCSCSTTCHHHHHHHHHH
T ss_pred hhhcccceeeEeecccccCcccccccccccceEEeeecccccCCCCceEEEechhhhhhhccccccccccchhhhccccc
Confidence 999999999999999999999999999999999999999 66899999999999888777776655433
Q ss_pred cccCCCCCcchhHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEec---CC
Q psy15216 1624 EYGLRSGTLATHQIVGMGEAFRL-ARIE-MKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF---IE 1698 (2602)
Q Consensus 1624 ~~~~~~gt~~~~~~~al~~aL~~-~~~~-~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~---~~ 1698 (2602)
......+|++...+.++..++.. ..++ ......+...+.+.+++.+.. .+..+..++..+++....+.+|. .+
T Consensus 231 ~~~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~~~~~~rs~~v~~~~~p~~~~~~ 308 (361)
T d1m32a_ 231 NHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRA--LGFNTLLDDELHSPIITAFYSPEDPQYR 308 (361)
T ss_dssp TTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH--TTCCBSSCGGGBCSSEEEEECCCCTTCC
T ss_pred cccccCCCCCchhhhHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHhh--cCCcccCChhhcCCcEEEEECCCCCCCC
Confidence 23345678999899888888873 3333 556667778888888888876 45555555555566666666653 34
Q ss_pred cHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHhhhh
Q psy15216 1699 GESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKEFF 1768 (2602)
Q Consensus 1699 ~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~~~~ 1768 (2602)
..++...| ++|.+.+|..+.. +.+|||+..|++.+||++++++|++.+.|
T Consensus 309 ~~~~~~~l~~~gi~i~~G~~~~~--------------------~~~Ris~~g~~~~~di~~lv~al~~~L~~ 360 (361)
T d1m32a_ 309 FSEFYRRLKEQGFVIYPGKVSQS--------------------DCFRIGNIGEVYAADITALLTAIRTAMYW 360 (361)
T ss_dssp HHHHHHHHHHTTEECEECCCSSS--------------------CEEEEECCSSCCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHCCcEEECCCcCCC--------------------CEEEEeCCCCCCHHHHHHHHHHHHHHcCC
Confidence 45676666 8999887754322 78999987789999999999999987665
|
| >d1yuwa1 b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: DnaK species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.92 E-value=1e-25 Score=241.84 Aligned_cols=138 Identities=42% Similarity=0.683 Sum_probs=130.0
Q ss_pred CCceeeeccccccceEeeeccEEEEEEecCCCCCCCcEEEEEeccccccceeeeEeecCccccccCceeeeeEecCCCCC
Q psy15216 1005 DDNFLLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPM 1084 (2602)
Q Consensus 1005 ~~~~~~~dv~~~~~gi~~~~~~~~~ii~~~t~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~i~~~ 1084 (2602)
.+++++.||+|+||||++.+|.|.++||||++||+++++.|+|..|||+.+.|+|||||+..+.+|.+||+|.|+|+||+
T Consensus 4 v~~~~l~DV~p~slGie~~gg~~~~iI~rnt~iP~~~~~~f~T~~d~Q~~v~i~i~qGe~~~~~~n~~lg~f~l~~ip~~ 83 (159)
T d1yuwa1 4 VQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPA 83 (159)
T ss_dssp TTSSCCCCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCSEEEEEEEESSSSBGGGSEEEEEEEEECCCCC
T ss_pred cceEEEEEecCCceEEEEcCCEEEEEEcCCcccceeeeEEEeeccCCCcEEEEEEEcCchhhccCccEEEEEEECCCCcC
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccEEEEEEEECCCeeEEEEEEEecCCceEEEEEecCCC-CCHHHHHhhhhccccCCCc
Q psy15216 1085 PAGRARIKVTYQVDADGLLSIFAYEKISGKKKFITIKPFYN-MNLDEIKNGAIFNENSGIS 1144 (2602)
Q Consensus 1085 ~~g~~~i~v~f~~d~~g~l~v~a~~~~~g~~~~~~~~~~~~-l~~~~i~~~~~~~~~~g~~ 1144 (2602)
|+|.++|+|+|+||.||+|+|+|++..||++..++|....+ ||++||++++ ++++-..
T Consensus 84 ~~G~~~I~Vtf~id~nGil~V~A~d~~Tg~~~~i~I~~~~~~Ls~eEIek~i--~eae~~~ 142 (159)
T d1yuwa1 84 PRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITITNDKGRLSKEDIERMV--QEAEKYK 142 (159)
T ss_dssp STTCCCEEEEEEECTTCCEEEEEEETTTCCEEEEEECCCSSCSCHHHHHHHH--HHHHHTT
T ss_pred CCCCceEEEEEEEcCCCeEEEEEEEcCCCCeEEEEEecCCCCCCHHHHHHHH--HHHHHHH
Confidence 99999999999999999999999999999999999998765 9999999986 5444433
|
| >d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.92 E-value=1.1e-24 Score=279.85 Aligned_cols=332 Identities=13% Similarity=0.131 Sum_probs=254.3
Q ss_pred CCCCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCC----CCCcEEEeCCHHHHHHHHHHhhh
Q psy15216 1400 DATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA----DPREIIWTSGATESNNLAIKGAA 1475 (2602)
Q Consensus 1400 ~~~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~----~~~~iv~t~gaT~al~~al~~l~ 1475 (2602)
+..++.++.|+++|.. +.. ++.+..+...+.++++.+++++++ +++.|+||+|+|+++++++.++.
T Consensus 9 PGP~~v~~~V~~Am~~--------~~~--~hr~~~f~~~~~~~~~~~r~~~~~~~~~~~~~i~~t~sgT~a~~~~~~~l~ 78 (382)
T d2bkwa1 9 PGPIILSGAVQKALDV--------PSL--GHTSPEFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFI 78 (382)
T ss_dssp SSSCCCCHHHHHTTSC--------CCC--CTTSHHHHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHS
T ss_pred CCCCCCCHHHHHHhCc--------ccC--CCCcHHHHHHHHHHHHHHHHHHhhhcCCCCeEEEEeCcHHHHHHHHHHHHH
Confidence 3446778888877621 221 122456777888889999998875 55679999999999999999986
Q ss_pred hhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccC-CCCCcChhHHHhhcc-CCceEEEEeccccccccccChHH
Q psy15216 1476 HFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK-NNGLITLSQLEEKIC-SDTILVSVMLVNNEIGVIQPILE 1553 (2602)
Q Consensus 1476 ~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~-~~~~id~d~l~~~i~-~~t~lv~l~~~~n~tG~~~~l~~ 1553 (2602)
..+++||+|++...+|++.... ..+...|..+..+... ++...+.+.+++++. +++++++++|.+|.||...|+++
T Consensus 79 -~~~~~gd~vlv~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tg~~~~~~~ 156 (382)
T d2bkwa1 79 -LSKAPNKNVLVVSTGTFSDRFA-DCLRSYGAQVDVVRPLKIGESVPLELITEKLSQNSYGAVTVTHVDTSTAVLSDLKA 156 (382)
T ss_dssp -CTTCSCCEEEEECSSHHHHHHH-HHHHHTTCEEEEECCSSTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCHHH
T ss_pred -HhcCCCCceEEEEechhhhhhh-hhccccccccccccccCCCCccchhHHHHHhhhccchheeeeeccccccccccchh
Confidence 2357899999999888886543 3445567777777644 445578888887775 67899999999999999999999
Q ss_pred HHHHhhhc--CCEEEEecccccCcccccCCCCCccEEEEcccc-ccCCCceEEEEEecCCCCccccccccCCc-------
Q psy15216 1554 IGELCRSK--GVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGH------- 1623 (2602)
Q Consensus 1554 I~~ia~~~--gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K-~~gp~G~G~l~~~~~~~~~l~~~~~g~~~------- 1623 (2602)
+.++|++| ++++++|++|++|..|+++.++++|++++|.|| ++||+|+|+++++++.++.+.+...++..
T Consensus 157 ~~~~~~~~~~~~~~~vDa~qs~g~~pid~~~~giD~~~~s~~K~l~gP~G~g~l~vs~~~~~~~~~~~~~~~~~~~~~~~ 236 (382)
T d2bkwa1 157 ISQAIKQTSPETFFVVDAVCSIGCEEFEFDEWGVDFALTASQKAIGAPAGLSISLCSSRFMDYALNDSKNGHVHGYFSSL 236 (382)
T ss_dssp HHHHHHHHCTTSEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCSCEEEEEECHHHHHHHTCHHHHCCCSCSTTCH
T ss_pred hhhhccccccceeeeeecccccccccccccccCeeEEeecccccCcCCCchhhhhccHHHHhhhhhcccCCCcccchhhh
Confidence 99988776 599999999999999999999999999999999 55999999999998876655443322211
Q ss_pred ------------cccCCCCCcchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCC--CCCCCc
Q psy15216 1624 ------------EYGLRSGTLATHQIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDM--NNRIPH 1688 (2602)
Q Consensus 1624 ------------~~~~~~gt~~~~~~~al~~aL~~~-~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~--~~~~~~ 1688 (2602)
..+...+|+++..++++.+||+++ ..+++.+.++++++++++++.+.+ ..++...... ....+.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~aL~~~~~~g~~~~~~~~~~l~~~l~~~l~~-~~~~~~~~~~~~~~~s~~ 315 (382)
T d2bkwa1 237 RRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVN-GLQLTSVSRYPSNMSAHG 315 (382)
T ss_dssp HHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHT-TTCCEESSCSSSTTBCSS
T ss_pred hhhhhhhhcccccccccccCCcHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhh-cccccccccCchhccCCc
Confidence 234567899999999999999954 467889999999999999999987 5566665432 223334
Q ss_pred eEEEEEecCCcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEe-cCCCCCHHHHHHHHHHHHH
Q psy15216 1689 NLNISFNFIEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFT-IGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1689 ~~~~~~~~~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls-~~~~~t~edid~li~~L~~ 1764 (2602)
++ .+...++.++...| +||.++.|.++.. ..+.+||| +|..++.+++++++++|..
T Consensus 316 v~--~~~~~~~~~~~~~L~~~gi~i~~G~~~~~------------------~~~~~Ri~~~G~~~~~e~i~~l~~~l~~ 374 (382)
T d2bkwa1 316 LT--AVYVADPPDVIAFLKSHGVVIAGGIHKDI------------------GPKYIRIGHMGVTACNKNLPYMKNCFDL 374 (382)
T ss_dssp CE--EEECSCHHHHHHHHHHTTEECBCCCCTTT------------------GGGEEEECCCGGGTSSTTCTHHHHHHHH
T ss_pred EE--EEcCCCHHHHHHHHHHCCeEEECCCChhh------------------cCCEEEEeCCcCCCCHHHHHHHHHHHHH
Confidence 43 44445667777666 8999988765422 23789999 6666678889988888875
|
| >d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.92 E-value=1.4e-24 Score=279.02 Aligned_cols=310 Identities=13% Similarity=0.144 Sum_probs=243.7
Q ss_pred hhhHHHHHHHHHHHHHHHhCC----CCCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHHHHHhCCc
Q psy15216 36 GWTAEKAIEKARNEVAQLIYA----DPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGF 111 (2602)
Q Consensus 36 ~~~~~~~~~~~r~~lA~~~g~----~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~ 111 (2602)
+......++++++.+.++++. +++.|+||+|+|++++.++.++. ..+++||+|++...++++.. +...+++.|.
T Consensus 31 ~~~f~~~~~~~~~~~r~~~~~~~~~~~~~i~~t~sgT~a~~~~~~~l~-~~~~~gd~vlv~~~~~~~~~-~~~~~~~~~~ 108 (382)
T d2bkwa1 31 SPEFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFI-LSKAPNKNVLVVSTGTFSDR-FADCLRSYGA 108 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHS-CTTCSCCEEEEECSSHHHHH-HHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHHHHHHhhhcCCCCeEEEEeCcHHHHHHHHHHHHH-HhcCCCCceEEEEechhhhh-hhhhcccccc
Confidence 445667788888888888874 55679999999999999999986 23578999999998888864 3444566788
Q ss_pred EEEEeccCC-CCccChHHHHhhcc-CCceEEEEecccCcccccccHHHHHHHHHhc--CCEEEEecccccccccccCCCC
Q psy15216 112 RVTYLKPKN-NGLITLSQLEEKIC-SDTILVSVMLVNNEIGVIQPILEIGELCRSK--GVIFHCDAAQAVGKIDINIQNY 187 (2602)
Q Consensus 112 ~v~~v~~~~-~~~ld~e~l~~~i~-~~tklv~i~~~~npTG~~~~l~~I~~la~~~--g~~livD~a~a~g~~~~dl~~~ 187 (2602)
.+..+...+ +...+.+.+++++. ++++++++++.+|.||...|++++.++|+++ ++++++|++|++|..|+|+.++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~vDa~qs~g~~pid~~~~ 188 (382)
T d2bkwa1 109 QVDVVRPLKIGESVPLELITEKLSQNSYGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCEEFEFDEW 188 (382)
T ss_dssp EEEEECCSSTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCHHHHHHHHHHHCTTSEEEEECTTTTTTSCCCTTTT
T ss_pred ccccccccCCCCccchhHHHHHhhhccchheeeeeccccccccccchhhhhhccccccceeeeeeccccccccccccccc
Confidence 887776544 45678888887774 6789999999999999999999999998876 5999999999999999999999
Q ss_pred CccEEEecccccc-CCCCcEEEEEecCCCCcccceecCCCc-------------------cccccccCcchhHHHHHHHH
Q psy15216 188 KVDLMSFSAHKIY-GPKGIGALYIRRNPRTRIEAQIHGGGH-------------------EYGLRSGTLATHQIVGMGEA 247 (2602)
Q Consensus 188 ~~D~~~~S~~K~~-Gp~G~G~l~~~~~~~~~l~~~~~g~~~-------------------~~~~~~gt~~~~~~~al~~a 247 (2602)
++|++++|.||++ ||+|+|++++++++.+.+.+...++.. ..+...+||++..++++..|
T Consensus 189 giD~~~~s~~K~l~gP~G~g~l~vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~a 268 (382)
T d2bkwa1 189 GVDFALTASQKAIGAPAGLSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVA 268 (382)
T ss_dssp TCSEEEEESSSTTCCCSCEEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHH
T ss_pred CeeEEeecccccCcCCCchhhhhccHHHHhhhhhcccCCCcccchhhhhhhhhhhhcccccccccccCCcHHHHHHHHHH
Confidence 9999999999954 899999999999877666554332211 12345689999999999999
Q ss_pred HHHH-HHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCC--CCCCCceEEEEEcccChhHHHHHh--CCeEEcccccCC
Q psy15216 248 FRLA-RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDM--NNRIPHNLNISFNFIEGESLLMAI--KDIAVSSGSACT 322 (2602)
Q Consensus 248 l~~~-~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~L--~gI~v~~g~~~~ 322 (2602)
|++. .++++.+.++++++++++++.+.. .+++..+... ..+.+.++ .+...++.++...| +||.++.|.++.
T Consensus 269 L~~~~~~g~~~~~~~~~~l~~~l~~~l~~-~~~~~~~~~~~~~~~s~~v~--~~~~~~~~~~~~~L~~~gi~i~~G~~~~ 345 (382)
T d2bkwa1 269 LKEILEEGLHKRWDLHREMSDWFKDSLVN-GLQLTSVSRYPSNMSAHGLT--AVYVADPPDVIAFLKSHGVVIAGGIHKD 345 (382)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHT-TTCCEESSCSSSTTBCSSCE--EEECSCHHHHHHHHHHTTEECBCCCCTT
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHhhh-cccccccccCchhccCCcEE--EEcCCCHHHHHHHHHHCCeEEECCCChh
Confidence 9954 567899999999999999999977 5666665432 22333333 44445677777777 799998876542
Q ss_pred CCCCChHHHHHHcCCCccCCCCeEEEe-cCCCCCHHHHHHHHHHHHh
Q psy15216 323 SASLEPSYVLRALGCNDELAHSSIRFT-IGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 323 ~~~~~~~~~~~~~g~~~~~~~~~iRis-~~~~~t~edid~li~~L~~ 368 (2602)
- .++.+||| +|+.++.+++++++++|+.
T Consensus 346 ~------------------~~~~~Ri~~~G~~~~~e~i~~l~~~l~~ 374 (382)
T d2bkwa1 346 I------------------GPKYIRIGHMGVTACNKNLPYMKNCFDL 374 (382)
T ss_dssp T------------------GGGEEEECCCGGGTSSTTCTHHHHHHHH
T ss_pred h------------------cCCEEEEeCCcCCCCHHHHHHHHHHHHH
Confidence 2 23789999 7777788889988888875
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Probab=99.92 E-value=1.5e-24 Score=278.20 Aligned_cols=337 Identities=14% Similarity=0.101 Sum_probs=246.5
Q ss_pred HHHHHHHHHhcCCCccccceeeeeceeeeccCCCCCCCHHHHHHHHHHHhhc-cCCCCCccchhHHHHHHHHHHHHHHHH
Q psy15216 1369 FIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDATTPIDPRVVDKMIPYLRVQ-FGNPASRNHIYGWTAEKAIEKARNEVA 1447 (2602)
Q Consensus 1369 ~~~v~~aL~~~g~~~~~~ei~~iP~~~v~L~~~~~~~~~~v~eal~~~l~~~-~~np~~~~~~~~~~~~~~~~~lr~~ia 1447 (2602)
+.+..++|++.|.++.+..++ .| +.+.|+.+++++.+.++.. .+|+.. ....++|++++
T Consensus 18 i~~~a~~~~~~g~~vi~l~~G-~p---------~~~~p~~v~~a~~~~~~~~~~~Y~~~----------~G~~~lR~aia 77 (388)
T d1j32a_ 18 IDAKAKAMKAEGIDVCSFSAG-EP---------DFNTPKHIVEAAKAALEQGKTRYGPA----------AGEPRLREAIA 77 (388)
T ss_dssp THHHHHHHHTTTCCCEECCCS-SC---------SSCCCHHHHHHHHHHHHTTCCSCCCT----------TCCHHHHHHHH
T ss_pred HHHHHHHHHHCCCCeEECCCC-CC---------CCCCCHHHHHHHHHHHhcCCCCCCCC----------CCCHHHHHHHH
Confidence 466778888889888777766 34 2477889999999988752 223222 11345666666
Q ss_pred HHh----C--CCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCC--CCC
Q psy15216 1448 QLI----Y--ADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGL 1519 (2602)
Q Consensus 1448 ~~~----g--~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~ 1519 (2602)
+++ | +++++|++|+|+++|+..++.++. +|||+|++++|.|+.+...+... |.+++.++.+. ++.
T Consensus 78 ~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~~----~~gd~Vlv~~P~y~~~~~~~~~~---~~~~v~~~~~~~~~~~ 150 (388)
T d1j32a_ 78 QKLQRDNGLCYGADNILVTNGGKQSIFNLMLAMI----EPGDEVIIPAPFWVSYPEMVKLA---EGTPVILPTTVETQFK 150 (388)
T ss_dssp HHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHC----CTTCEEEEESSCCTHHHHHHHHT---TCEEEEECCCGGGTTC
T ss_pred HHHHHhcccCCCCceEEEcCCHHHHHHHHHHHHh----CCCCEEEEcCCCcHHHHHHHHHh---cCeEEEEecccccccC
Confidence 654 4 478899999999999999999987 89999999999999988776655 88888888654 466
Q ss_pred cChhHHHhhccCCceEEEEeccccccccccC---hHHHHHHhhhcCCEEEEecccccCcc----cccCCCC-----CccE
Q psy15216 1520 ITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQAVGKI----DINIQNY-----KVDL 1587 (2602)
Q Consensus 1520 id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~---l~~I~~ia~~~gi~vivD~a~~~g~~----~~~l~~~-----~~D~ 1587 (2602)
+|+++++++++++++++++++|+||||.+++ +++|+++|++||+++|+|++|+.... +..+... ...+
T Consensus 151 ~d~~~l~~~~~~~~~~~~~~~P~NPTG~~~~~~~~~~l~~~~~~~~~~iI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~i 230 (388)
T d1j32a_ 151 VSPEQIRQAITPKTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSV 230 (388)
T ss_dssp CCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEE
T ss_pred CCHHHHHHhCCCCCeEEEECCCCCCCCcccchhhhhhhhcccccCCeEEEchhhhhcccccCCCCCCHHHhCccccccee
Confidence 9999999999999999999999999999999 67788889999999999999853221 1111111 1357
Q ss_pred EEEccccccCCCc--eEEEEEecCCCCccccccccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15216 1588 MSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRL 1665 (2602)
Q Consensus 1588 ~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l 1665 (2602)
++.|++|.++++| +||++.++++++.+.... .....+++...+.++..++......+.+.+.++++.++++
T Consensus 231 ~~~S~SK~~~~~GlRvG~~~~~~~~~~~~~~~~-------~~~~~~~~~~~q~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (388)
T d1j32a_ 231 VCSGFAKTYAMTGWRVGFLAGPVPLVKAATKIQ-------GHSTSNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYM 303 (388)
T ss_dssp EEEESTTTTTCTTTCCEEEECCHHHHHHHHHHH-------HTTTCSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHH
T ss_pred EecCChhhhhcchhHeEEEEECHHHHHHHHHhh-------hhccccccHHHHHHHhhcccchHHHHHHHHHHHHHHHHHH
Confidence 8889999888778 899999877665543322 1122345555555555555544456788888899999999
Q ss_pred HHHHhhcCCcEEEeCCCCCCCCceEEEEEec--CCcHHHHHhc---CCEEEccccccCCCCCChhHHHHHcCCCccccCC
Q psy15216 1666 YNGLMESIEEIYINGDMNNRIPHNLNISFNF--IEGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHS 1740 (2602)
Q Consensus 1666 ~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 1740 (2602)
.+.|.+ .+++.+..|... ....+.++. .+..++...| +||.+.+|..|+.. +
T Consensus 304 ~~~l~~-~~g~~~~~p~gg---~~l~~~l~~~~~~~~~~~~~ll~~~gV~v~pG~~F~~~-------------------~ 360 (388)
T d1j32a_ 304 LDALNA-MPGLECPKPDGA---FYMFPSIAKTGRSSLDFCSELLDQHQVATVPGAAFGAD-------------------D 360 (388)
T ss_dssp HHHHHT-CTTCBCCCCCBT---TEECCBCGGGTCCHHHHHHHHHHHHCEECEEGGGGTCT-------------------T
T ss_pred HHHHHh-CCCCEecCCCce---EEEEEECCCCCCCHHHHHHHHHHhCCEEEEeccccCCC-------------------C
Confidence 999987 677766533221 111122222 3445565554 59999999988643 7
Q ss_pred eEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1741 SIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1741 ~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
++|++++ ++.++++.++++|++
T Consensus 361 ~~Rls~~--~~~e~l~~al~rl~~ 382 (388)
T d1j32a_ 361 CIRLSYA--TDLDTIKRGMERLEK 382 (388)
T ss_dssp BEEEECC--SCHHHHHHHHHHHHH
T ss_pred eEEEEEe--CCHHHHHHHHHHHHH
Confidence 9999997 578999999999987
|
| >d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]
Probab=99.91 E-value=4.9e-24 Score=273.68 Aligned_cols=332 Identities=15% Similarity=0.178 Sum_probs=261.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCC-CcEEEeCCHHHHHHHHHHhccc
Q psy15216 2 DYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADP-REIIWTSGATESNNLAIKGAAH 80 (2602)
Q Consensus 2 d~a~~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~-~~Iv~t~g~T~al~~~~~~l~~ 80 (2602)
.+.|-++.|+.|+++|.... .+..+..+.+.++++|+.+++++|++. ..|+|++|+|++++.++.++.
T Consensus 22 ~~PGP~~v~~~Vl~am~~~~----------~~hr~~ef~~i~~~~r~~l~~ll~~~~~~~i~~~g~gT~~~~~~~~~~~- 90 (377)
T d1vjoa_ 22 LGPGPSNAHPSVLQAMNVSP----------VGHLDPAFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANAV- 90 (377)
T ss_dssp CSSSCCCCCHHHHHHHSSCC----------CCTTSHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHC-
T ss_pred ecCCCCCCCHHHHHHhCcCC----------CCCCCHHHHHHHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHHHHhcc-
Confidence 45566788888887764311 233467788899999999999999954 468888999999999999988
Q ss_pred ccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHh-hccCCceEEEEecccCcccccccHHHHH
Q psy15216 81 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEE-KICSDTILVSVMLVNNEIGVIQPILEIG 159 (2602)
Q Consensus 81 ~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~-~i~~~tklv~i~~~~npTG~~~~l~~I~ 159 (2602)
.+|+.+++....|.+.. +.......+.....+....+...+.+..+. ...++++++++++.+|.||.+.|+++|.
T Consensus 91 ---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tg~~~~i~~i~ 166 (377)
T d1vjoa_ 91 ---EPGDVVLIGVAGYFGNR-LVDMAGRYGADVRTISKPWGEVFSLEELRTALETHRPAILALVHAETSTGARQPLEGVG 166 (377)
T ss_dssp ---CTTCEEEEEESSHHHHH-HHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHH
T ss_pred ---ccccccceeeechhhhh-hhhhhhhhcccccccccCCCCcccchhhhhhhhcCcceeeeeeeeeccceeeechhhhh
Confidence 89999999988888753 334455667777777666555555555544 4457899999999999999999999999
Q ss_pred HHHHhcCCEEEEecccccccccccCCCCCccEEEecccc-ccCCCCcEEEEEecCCCCcccceecCCCc-----------
Q psy15216 160 ELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGH----------- 227 (2602)
Q Consensus 160 ~la~~~g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K-~~Gp~G~G~l~~~~~~~~~l~~~~~g~~~----------- 227 (2602)
++||++|+++++|++|++|..+++++.+++|++++|.|| ++||+|+|+++.+++.++...+...++..
T Consensus 167 ~~~~~~g~~~~vDa~~~~g~~~~~~~~~~~d~~~~s~~K~~~gp~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (377)
T d1vjoa_ 167 ELCREFGTLLLVDTVTSLGGVPIFLDAWGVDLAYSCSQKGLGCSPGASPFTMSSRAIEKLQRRRTKVANWYLDMNLLGKY 246 (377)
T ss_dssp HHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEECCSSSTTCSCSSCEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHH
T ss_pred hhhhhccceEEEecchhhhhhhhcccccccceeeecccccccCCCEEEEecchhhHHhhhhccCCCCcceeeccchhhhc
Confidence 999999999999999999999999999999999999999 67899999999998766554443322211
Q ss_pred --cccccccCcchhHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEc-ccCh
Q psy15216 228 --EYGLRSGTLATHQIVGMGEAFRL-ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN-FIEG 303 (2602)
Q Consensus 228 --~~~~~~gt~~~~~~~al~~al~~-~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~-~~~~ 303 (2602)
...+..+++++....++..++.. ...+.+...++.+++..++++.+.+ .++.++.++..+.+.++.+.++ +.++
T Consensus 247 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~--~~~~~~~~~~~rs~~v~~~~~p~~~~~ 324 (377)
T d1vjoa_ 247 WGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLED--IGLSLHVEKEYRLPTLTTVCIPDGVDG 324 (377)
T ss_dssp HSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH--TTCCBSSCGGGBCSSEEEEECCTTCCH
T ss_pred cCcccccccccceechhhhHHHHhhhhhcCchHHHHHHHHHhhhhhhhhhc--cCceeecChHhcCCeEEEEECCCCCCH
Confidence 23345567777777777777664 4456889999999999999999987 5666666666677777777775 4678
Q ss_pred hHHHHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEe-cCCCCCHHHHHHHHHHHHhh
Q psy15216 304 ESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFT-IGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 304 ~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis-~~~~~t~edid~li~~L~~~ 369 (2602)
.++...| ++|.++.|..+.. ++.+||| +|+++|.|||++++++|++.
T Consensus 325 ~~l~~~L~~~~gI~v~~G~~~~~-------------------~~~~Ris~~g~~~t~edi~~lv~al~~~ 375 (377)
T d1vjoa_ 325 KAVARRLLNEHNIEVGGGLGELA-------------------GKVWRVGLMGFNSRKESVDQLIPALEQV 375 (377)
T ss_dssp HHHHHHHHHHHCEECEECCGGGT-------------------TTEEEEECCGGGCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCEEEecCccccc-------------------CCEEEEecCcCCCCHHHHHHHHHHHHHH
Confidence 8887776 5999988876543 2789999 58889999999999999974
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Probab=99.91 E-value=1.3e-23 Score=269.31 Aligned_cols=336 Identities=14% Similarity=0.077 Sum_probs=240.0
Q ss_pred HHHHHHHHhcCCCccccceeeeeceeeeccCCCCCCCHHHHHHHHHHHhh-ccCCCCCccchhHHHHHHHHHHHHHHHHH
Q psy15216 1370 IEIKNSLEMTGFKAESSGIVMRPYTNIVFKDATTPIDPRVVDKMIPYLRV-QFGNPASRNHIYGWTAEKAIEKARNEVAQ 1448 (2602)
Q Consensus 1370 ~~v~~aL~~~g~~~~~~ei~~iP~~~v~L~~~~~~~~~~v~eal~~~l~~-~~~np~~~~~~~~~~~~~~~~~lr~~ia~ 1448 (2602)
.+....|+..|.++....++ .| +.+.|+.+.+++.+.+.. ..+|+... ...++|+.+++
T Consensus 20 ~~~a~~~~~~G~~vi~l~~g-~p---------~~~~p~~i~~a~~~~~~~~~~~Y~~~~----------G~~~lR~~ia~ 79 (382)
T d1b5pa_ 20 NAKALELRRQGVDLVALTAG-EP---------DFDTPEHVKEAARRALAQGKTKYAPPA----------GIPELREALAE 79 (382)
T ss_dssp HHHHHHHHHTTCCCEECCCS-SC---------SSCCCHHHHHHHHHHHHTTCCSCCCTT----------CCHHHHHHHHH
T ss_pred HHHHHHHHhCCCCeEECCCC-CC---------CCCCCHHHHHHHHHHHhcCCcCCCCCC----------CCHHHHHHHHh
Confidence 34445678888887766665 34 347788999999998875 23343321 13567777777
Q ss_pred Hh------CCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCC--CCCc
Q psy15216 1449 LI------YADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLI 1520 (2602)
Q Consensus 1449 ~~------g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~i 1520 (2602)
++ ++++++|++|+|+++|+..++.++. ++||.|++++|.|+.+....+.+ |.+++.++..+ ++.+
T Consensus 80 ~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~----~~gd~vl~~~P~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~ 152 (382)
T d1b5pa_ 80 KFRRENGLSVTPEETIVTVGGSQALFNLFQAIL----DPGDEVIVLSPYWVSYPEMVRFA---GGVVVEVETLPEEGFVP 152 (382)
T ss_dssp HHHHTTCCCCCGGGEEEESHHHHHHHHHHHHHC----CTTCEEEEEESCCTHHHHHHHHT---TCEEEEEECCGGGTTCC
T ss_pred hhhhhcccccccccceecCCHHHHHHHHHHHhC----CCCCEEEECCCCcHHHHHHHHHh---cCeEEEEecccccccCC
Confidence 76 4578899999999999999999997 89999999999999988776665 99999998764 4568
Q ss_pred ChhHHHhhccCCceEEEEeccccccccccC---hHHHHHHhhhcCCEEEEecccccCc---ccc-cC-CCCCccEEEEcc
Q psy15216 1521 TLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQAVGK---IDI-NI-QNYKVDLMSFSA 1592 (2602)
Q Consensus 1521 d~d~l~~~i~~~t~lv~l~~~~n~tG~~~~---l~~I~~ia~~~gi~vivD~a~~~g~---~~~-~l-~~~~~D~~v~S~ 1592 (2602)
|+++++++++++++++++++||||||.+++ +++|+++|++||+++|+|++|+.-. .+. .. ......+++.|+
T Consensus 153 d~~~l~~~~~~~~~~i~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~s~ 232 (382)
T d1b5pa_ 153 DPERVRRAITPRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGA 232 (382)
T ss_dssp CHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTTTEEEEEES
T ss_pred CHHHHHHhCCCCCeEEEECCCCCCcchhCCHHHHHHHHHHHHHcCeEEEEEccccceecCCCCCCHHHcCCCCEEEEecc
Confidence 999999999999999999999999999999 7788999999999999999986321 111 11 111234778899
Q ss_pred ccccCCCc--eEEEEEecCCCCccccccccCCccccCCCCCcchhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q psy15216 1593 HKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFR---LARIEMKEELKRILFLQKRLYN 1667 (2602)
Q Consensus 1593 ~K~~gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~---~~~~~~~~~~~~~~~l~~~l~~ 1667 (2602)
+|.++.+| +||+++++++++.+.... .....+++.....++..++. .........++.++..++.+.+
T Consensus 233 SK~~~~~GlR~G~~~~~~~~i~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (382)
T d1b5pa_ 233 AKAFAMTGWRIGYACGPKEVIKAMASVS-------RQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLE 305 (382)
T ss_dssp TTTTTCGGGCCEEEECCHHHHHHHHHHH-------HTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccCcHhheEEEEECHHHHHHHHHHH-------HhcccCcccccccccccccccccchhHHHHHHHHHHHhhhhHHHH
Confidence 99888788 899999887665554322 11223444444443334443 2334466677777888888888
Q ss_pred HHhhcCCcEEEeCCCCCCCCceEEEEEec--CCcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEE
Q psy15216 1668 GLMESIEEIYINGDMNNRIPHNLNISFNF--IEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIR 1743 (2602)
Q Consensus 1668 ~L~~~~~gl~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iR 1743 (2602)
.+.. .++.+..|... ....+.++. .+...+...| +||.+.+|..|+.. +++|
T Consensus 306 ~l~~--~g~~~~~p~gg---~~~~~~~~~~~~~~~~~~~~l~e~gV~v~PG~~F~~~-------------------~~iR 361 (382)
T d1b5pa_ 306 GLTA--LGLKAVRPSGA---FYVLMDTSPIAPDEVRAAERLLEAGVAVVPGTDFAAF-------------------GHVR 361 (382)
T ss_dssp HHHH--HTCCBCCCSBT---TEEEEECTTTCSSHHHHHHHHHHTTEECEESGGGTCT-------------------TEEE
T ss_pred HHhh--cCCeEecCCce---EEEeEeCCCCCCCHHHHHHHHHHCCEEEEeCcccCCC-------------------CeEE
Confidence 8877 35544322211 112222322 2344455445 89999999988653 8999
Q ss_pred EecCCCCCHHHHHHHHHHHHHh
Q psy15216 1744 FTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1744 ls~~~~~t~edid~li~~L~~~ 1765 (2602)
++++ .++++++.++++|++.
T Consensus 362 is~~--~~~e~l~~al~rl~~~ 381 (382)
T d1b5pa_ 362 LSYA--TSEENLRKALERFARV 381 (382)
T ss_dssp EECC--SCHHHHHHHHHHGGGG
T ss_pred EEEc--CCHHHHHHHHHHHHHh
Confidence 9997 4789999999998863
|
| >d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 3-hydroxykynurenine transaminase species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]
Probab=99.91 E-value=8.6e-24 Score=272.36 Aligned_cols=331 Identities=16% Similarity=0.215 Sum_probs=255.9
Q ss_pred CCCCCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCC-cEEEeCCHHHHHHHHHHhccccc
Q psy15216 4 SATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPR-EIIWTSGATESNNLAIKGAAHFY 82 (2602)
Q Consensus 4 a~~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~-~Iv~t~g~T~al~~~~~~l~~~~ 82 (2602)
.|-++.++.|+++|.+. . .+..+..+.+.++++|+.+++++|++.. .|++++|+|.+++.++.++.
T Consensus 23 PGP~~~~~~V~~Am~~~--------~--~~hr~~ef~~i~~~~r~~L~~ll~~~~~~~i~~~gsgT~a~ea~~~~l~--- 89 (388)
T d2ch1a1 23 PGPSNCSKRVLTAMTNT--------V--LSNFHAELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNLL--- 89 (388)
T ss_dssp SSSCCCCHHHHHHTTSC--------C--CCTTCHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHC---
T ss_pred CCCCCCCHHHHHHhCcC--------C--CCCCCHHHHHHHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHHHHHhc---
Confidence 44456688887775322 1 1234677888999999999999999655 47778899999999999998
Q ss_pred ccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhc-cCCceEEEEecccCcccccccHHHHHHH
Q psy15216 83 KKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKI-CSDTILVSVMLVNNEIGVIQPILEIGEL 161 (2602)
Q Consensus 83 ~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i-~~~tklv~i~~~~npTG~~~~l~~I~~l 161 (2602)
.+|+.+++....+.+. .+...+.+.+.....+...+....+.+.++..+ ..++++++++|.+|.||.+.|+++|+++
T Consensus 90 -~~~~~vl~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~t~tG~~~~~~~i~~~ 167 (388)
T d2ch1a1 90 -EEGDRVLIAVNGIWAE-RAVEMSERYGADVRTIEGPPDRPFSLETLARAIELHQPKCLFLTHGDSSSGLLQPLEGVGQI 167 (388)
T ss_dssp -CTTCEEEEEESSHHHH-HHHHHHHHTTCEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHH
T ss_pred -cccccccccccccccc-cchhhhhhhcccccccccccccccchhhhhhhhccCCcceeeeeecccccccccchhhhcch
Confidence 7899999988888775 445556677888888887777777777777666 4678999999999999999999999999
Q ss_pred HHhcCCEEEEecccccccccccCCCCCccEEEecccc-ccCCCCcEEEEEecCCCCcccceecCC---------------
Q psy15216 162 CRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGG--------------- 225 (2602)
Q Consensus 162 a~~~g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K-~~Gp~G~G~l~~~~~~~~~l~~~~~g~--------------- 225 (2602)
||++|+++++|++|++|..++|++++++|++++|.|| ++||+|+|+++++++..+.+.+...++
T Consensus 168 ~~~~~~~~~vD~~ss~g~~pid~~~~~~d~~~~s~~K~~~gp~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (388)
T d2ch1a1 168 CHQHDCLLIVDAVASLCGVPFYMDKWEIDAVYTGAQKVLGAPPGITPISISPKALDVIRNRRTKSKVFYWDLLLLGNYWG 247 (388)
T ss_dssp HHHTTCEEEEECTTTBTTBCCCTTTTTCCEEECCCC-CCCCCSSCEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTT
T ss_pred hccccceeeeeeeecccccccchhccCceEEEEccccccCCCCeEEEEeccHHHHHhhhcccCccccccccchhhhhhhc
Confidence 9999999999999999999999999999999999999 668999999999987555433322111
Q ss_pred -CccccccccCcchhHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEc-ccC
Q psy15216 226 -GHEYGLRSGTLATHQIVGMGEAFRLAR-IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN-FIE 302 (2602)
Q Consensus 226 -~~~~~~~~gt~~~~~~~al~~al~~~~-~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~-~~~ 302 (2602)
........++++...+.++..+++... .+.....++......+++..+.. .....+...+..+.+.++.|.++ +.+
T Consensus 248 ~~~~~~~~~~t~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~rs~~v~~~~~p~g~~ 326 (388)
T d2ch1a1 248 CYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGK-MGLDIFVKDPRHRLPTVTGIMIPKGVD 326 (388)
T ss_dssp CSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-HTCCBSSCSGGGBCTTEEEEECCTTCC
T ss_pred ccccccccCccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhh-cccccccCCHHHhCCeEEEEECCCCCC
Confidence 112233467888899998988888543 45666677777776667776655 22222234455566777778885 567
Q ss_pred hhHHHHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEe-cCCCCCHHHHHHHHHHHHhh
Q psy15216 303 GESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFT-IGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 303 ~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis-~~~~~t~edid~li~~L~~~ 369 (2602)
..++...| ++|.++.|.++..+ +.+||| +|.++|.|||++++++|++.
T Consensus 327 ~~~l~~~l~~~~gI~v~~G~~~~~~-------------------~~~RIs~~g~~~t~edI~~ll~alke~ 378 (388)
T d2ch1a1 327 WWKVSQYAMNNFSLEVQGGLGPTFG-------------------KAWRVGIMGECSTVQKIQFYLYGFKES 378 (388)
T ss_dssp HHHHHHHHHHHHCBCCBCCCGGGTT-------------------TEEEEECCGGGCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCEEEeCCCccccC-------------------CEEEEcCCcCCCCHHHHHHHHHHHHHH
Confidence 78887776 48999988776443 789999 68899999999999999974
|
| >d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Subgroup IV putative aspartate aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.91 E-value=3.3e-23 Score=259.16 Aligned_cols=325 Identities=12% Similarity=0.077 Sum_probs=254.1
Q ss_pred CCCCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhc
Q psy15216 1400 DATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYK 1479 (2602)
Q Consensus 1400 ~~~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~ 1479 (2602)
+..++.++.+++++.+.. .++.+..+.++++++++.++++++++++.+++++|+|.|+++++.++.
T Consensus 6 PGP~~v~~~V~~am~~~~----------~~hr~~~f~~i~~~~~~~l~~ll~~~~~~i~~~gsgT~a~e~~~~nl~---- 71 (348)
T d1iuga_ 6 PGPVRLHPKALEALARPQ----------LHHRTEAAREVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNLF---- 71 (348)
T ss_dssp SSSCCCCHHHHHHHHSCC----------CCTTSHHHHHHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHHC----
T ss_pred CCCCCCCHHHHHHhcCCC----------CCCCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHhcc----
Confidence 344677888888875422 122356788899999999999999987778999999999999999987
Q ss_pred cCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccCCceEEEEeccccccccccChHHHHHHhh
Q psy15216 1480 KRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCR 1559 (2602)
Q Consensus 1480 ~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~~ia~ 1559 (2602)
.+|++|++...++.+. .+...+++.|..+..++.+++..+++++ ...+++++++++|.+|.||.+.|+++|.++|+
T Consensus 72 ~~g~~vlv~~~G~f~~-~~~~~a~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~v~~~h~eTstG~~~~i~~i~~~~~ 147 (348)
T d1iuga_ 72 APGERVLVPVYGKFSE-RFYEIALEAGLVVERLDYPYGDTPRPED---VAKEGYAGLLLVHSETSTGALADLPALARAFK 147 (348)
T ss_dssp CTTCEEEEEECSHHHH-HHHHHHHHTTCEEEEEECCTTCCCCTTT---SCCSSCSEEEEESEETTTTEECCHHHHHHHHH
T ss_pred cccccceeecchHHHH-HHHHHHHhcCcccccccccCCCcccccc---ccccCCCeeEEEecchhhhhhccHHHHHHHHH
Confidence 7999999988887664 3556667778888888877655555544 34678899999999999999999999999999
Q ss_pred hcC--CEEEEecccccCcccccCCCCCccEEEEcccc-ccCCCceEEEEEecCCCCccccccccC-------CccccCCC
Q psy15216 1560 SKG--VIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGG-------GHEYGLRS 1629 (2602)
Q Consensus 1560 ~~g--i~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K-~~gp~G~G~l~~~~~~~~~l~~~~~g~-------~~~~~~~~ 1629 (2602)
+|+ .++++|+++++|..+++++.+++|++++|.|| ++||+|+|+++++++.++++.+.-+.. ....+..+
T Consensus 148 ~~~~~~l~~vDavss~g~~~i~~d~~~iD~~~~~sqK~l~gppG~~~v~~s~~~le~~~~~~~~~dl~~~~~~~~~~~~~ 227 (348)
T d1iuga_ 148 EKNPEGLVGADMVTSLLVGEVALEAMGVDAAASGSQKGLMCPPGLGFVALSPRALERLKPRGYYLDLARELKAQKEGESA 227 (348)
T ss_dssp HHCTTCEEEEECTTTBTTBCCCSGGGTCSEEEEESSSTTCCCSCEEEEEECHHHHHTCCCCSSTTCHHHHHHHHTTTCCS
T ss_pred hhhccceeechhhhcccccccccccccCCEEEeccccceecCCceeeeeechHHHhhhcccccccchhhhhhhhccCccc
Confidence 874 78999999999999999999999999999999 669999999999988776665421111 11344567
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEe-cCCcHHHHHhc--
Q psy15216 1630 GTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN-FIEGESLLMAI-- 1706 (2602)
Q Consensus 1630 gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~L-- 1706 (2602)
+||+++.++++.+||+.......+..++.+.....++..+.. .++.+.. ..+++..+.+.+| +.+..++...|
T Consensus 228 ~Tp~v~~i~~l~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~--~gl~~~~--~~~s~~v~~~~~P~g~~~~~~~~~l~~ 303 (348)
T d1iuga_ 228 WTPAINLVLAVAAVLEEVLPRLEEHLALKAWQNALLYGVGEE--GGLRPVP--KRFSPAVAAFYLPEGVPYARVKEAFAQ 303 (348)
T ss_dssp SCCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHH--TTCEESC--SSBCTTCEEEECCTTCCHHHHHHHHHT
T ss_pred ccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhh--hhhccCh--hhcCCeEEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999865544555555555555555555554 5777653 3356677778886 46777777766
Q ss_pred CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1707 KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1707 ~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
+||.+.+|..... ...+||+...+++.+|+++++++|++.
T Consensus 304 ~gi~i~~G~~~l~-------------------~~~~RIg~mG~~~~~d~~~~~~~l~~~ 343 (348)
T d1iuga_ 304 RGAVIAGGQGPLK-------------------GKVFRLSLMGAYDRYEALGVAGMFREV 343 (348)
T ss_dssp TTEECEECCGGGT-------------------TTEEEECCCSSCCHHHHHHHHHHHHHH
T ss_pred CCeEEEcCccccC-------------------CCEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 7999987764332 268999988899999999999999975
|
| >d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]
Probab=99.91 E-value=1.3e-23 Score=269.69 Aligned_cols=334 Identities=15% Similarity=0.186 Sum_probs=260.1
Q ss_pred eeccCCCCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCC-CcEEEeCCHHHHHHHHHHhh
Q psy15216 1396 IVFKDATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADP-REIIWTSGATESNNLAIKGA 1474 (2602)
Q Consensus 1396 v~L~~~~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~-~~iv~t~gaT~al~~al~~l 1474 (2602)
..+....++.++.|++++.... .++.+..+.+.++++|+.+++++|++. ..|+|++|+|++++.++.++
T Consensus 20 ~l~~PGP~~v~~~Vl~am~~~~----------~~hr~~ef~~i~~~~r~~l~~ll~~~~~~~i~~~g~gT~~~~~~~~~~ 89 (377)
T d1vjoa_ 20 LLLGPGPSNAHPSVLQAMNVSP----------VGHLDPAFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANA 89 (377)
T ss_dssp EECSSSCCCCCHHHHHHHSSCC----------CCTTSHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHH
T ss_pred eeecCCCCCCCHHHHHHhCcCC----------CCCCCHHHHHHHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHHHHhc
Confidence 3445677888999888763211 234567888999999999999999954 46778899999999999998
Q ss_pred hhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHH-hhccCCceEEEEeccccccccccChHH
Q psy15216 1475 AHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLE-EKICSDTILVSVMLVNNEIGVIQPILE 1553 (2602)
Q Consensus 1475 ~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~-~~i~~~t~lv~l~~~~n~tG~~~~l~~ 1553 (2602)
. .+|+.+++....|++... ...+...+.....+....+...+.+..+ +...+++++++++|.+|.||.+.|+++
T Consensus 90 ~----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tg~~~~i~~ 164 (377)
T d1vjoa_ 90 V----EPGDVVLIGVAGYFGNRL-VDMAGRYGADVRTISKPWGEVFSLEELRTALETHRPAILALVHAETSTGARQPLEG 164 (377)
T ss_dssp C----CTTCEEEEEESSHHHHHH-HHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTT
T ss_pred c----ccccccceeeechhhhhh-hhhhhhhcccccccccCCCCcccchhhhhhhhcCcceeeeeeeeeccceeeechhh
Confidence 7 899999999988887543 3344555777777766655555555444 445678999999999999999999999
Q ss_pred HHHHhhhcCCEEEEecccccCcccccCCCCCccEEEEcccc-ccCCCceEEEEEecCCCCccccccccCC----------
Q psy15216 1554 IGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGG---------- 1622 (2602)
Q Consensus 1554 I~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K-~~gp~G~G~l~~~~~~~~~l~~~~~g~~---------- 1622 (2602)
|.++||++|+++++|++|++|..+++++++++|++++|.|| ++||+|+|+++.+++.++...+...++.
T Consensus 165 i~~~~~~~g~~~~vDa~~~~g~~~~~~~~~~~d~~~~s~~K~~~gp~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (377)
T d1vjoa_ 165 VGELCREFGTLLLVDTVTSLGGVPIFLDAWGVDLAYSCSQKGLGCSPGASPFTMSSRAIEKLQRRRTKVANWYLDMNLLG 244 (377)
T ss_dssp HHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEECCSSSTTCSCSSCEEEEECHHHHHHHHTCSSCCSCSTTCHHHHH
T ss_pred hhhhhhhccceEEEecchhhhhhhhcccccccceeeecccccccCCCEEEEecchhhHHhhhhccCCCCcceeeccchhh
Confidence 99999999999999999999999999999999999999999 6789999999999865544333222211
Q ss_pred ---ccccCCCCCcchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEe-cC
Q psy15216 1623 ---HEYGLRSGTLATHQIVGMGEAFRL-ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN-FI 1697 (2602)
Q Consensus 1623 ---~~~~~~~gt~~~~~~~al~~aL~~-~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~-~~ 1697 (2602)
....+..+++++..+.++..++.. ...+.+...++.+++..++++.+.+ .++.++.++..+++....|.++ +.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~--~~~~~~~~~~~rs~~v~~~~~p~~~ 322 (377)
T d1vjoa_ 245 KYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLED--IGLSLHVEKEYRLPTLTTVCIPDGV 322 (377)
T ss_dssp HHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH--TTCCBSSCGGGBCSSEEEEECCTTC
T ss_pred hccCcccccccccceechhhhHHHHhhhhhcCchHHHHHHHHHhhhhhhhhhc--cCceeecChHhcCCeEEEEECCCCC
Confidence 123455667787777777777664 4456888899999999999999987 4566655566667777777776 35
Q ss_pred CcHHHHHhc---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEe-cCCCCCHHHHHHHHHHHHHh
Q psy15216 1698 EGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFT-IGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1698 ~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls-~~~~~t~edid~li~~L~~~ 1765 (2602)
+..++...| ++|.++.|..+..+ +.+|+| +++++|.|||++++++|++.
T Consensus 323 ~~~~l~~~L~~~~gI~v~~G~~~~~~-------------------~~~Ris~~g~~~t~edi~~lv~al~~~ 375 (377)
T d1vjoa_ 323 DGKAVARRLLNEHNIEVGGGLGELAG-------------------KVWRVGLMGFNSRKESVDQLIPALEQV 375 (377)
T ss_dssp CHHHHHHHHHHHHCEECEECCGGGTT-------------------TEEEEECCGGGCSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCEEEecCcccccC-------------------CEEEEecCcCCCCHHHHHHHHHHHHHH
Confidence 777777666 59999888765432 789999 57788999999999999974
|
| >d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Subgroup IV putative aspartate aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.91 E-value=5.2e-23 Score=257.36 Aligned_cols=325 Identities=12% Similarity=0.080 Sum_probs=253.1
Q ss_pred CCCCCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccc
Q psy15216 4 SATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYK 83 (2602)
Q Consensus 4 a~~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~ 83 (2602)
.|-++.|+.|+++|.+.. .+..+......++++++.++++++++++.+++++|+|.+++.++.++.
T Consensus 6 PGP~~v~~~V~~am~~~~----------~~hr~~~f~~i~~~~~~~l~~ll~~~~~~i~~~gsgT~a~e~~~~nl~---- 71 (348)
T d1iuga_ 6 PGPVRLHPKALEALARPQ----------LHHRTEAAREVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNLF---- 71 (348)
T ss_dssp SSSCCCCHHHHHHHHSCC----------CCTTSHHHHHHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHHC----
T ss_pred CCCCCCCHHHHHHhcCCC----------CCCCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHhcc----
Confidence 445577888887765422 122355677899999999999999987789999999999999999987
Q ss_pred cCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHH
Q psy15216 84 KRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCR 163 (2602)
Q Consensus 84 ~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~ 163 (2602)
.+|++|++....+.+. .+...+++.|..+..++.++...++++++ ..++++.++++|.+|+||.+.|+++|.++|+
T Consensus 72 ~~g~~vlv~~~G~f~~-~~~~~a~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~v~~~h~eTstG~~~~i~~i~~~~~ 147 (348)
T d1iuga_ 72 APGERVLVPVYGKFSE-RFYEIALEAGLVVERLDYPYGDTPRPEDV---AKEGYAGLLLVHSETSTGALADLPALARAFK 147 (348)
T ss_dssp CTTCEEEEEECSHHHH-HHHHHHHHTTCEEEEEECCTTCCCCTTTS---CCSSCSEEEEESEETTTTEECCHHHHHHHHH
T ss_pred cccccceeecchHHHH-HHHHHHHhcCcccccccccCCCccccccc---cccCCCeeEEEecchhhhhhccHHHHHHHHH
Confidence 7999999888776664 56677788899999888776655555443 4578899999999999999999999999999
Q ss_pred hc--CCEEEEecccccccccccCCCCCccEEEecccc-ccCCCCcEEEEEecCCCCcccceecCC-------Cccccccc
Q psy15216 164 SK--GVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGG-------GHEYGLRS 233 (2602)
Q Consensus 164 ~~--g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K-~~Gp~G~G~l~~~~~~~~~l~~~~~g~-------~~~~~~~~ 233 (2602)
++ +.++++|+++++|..+++++.+++|++++|.|| ++||+|+|+++++++++++++|.-+.+ ....+..+
T Consensus 148 ~~~~~~l~~vDavss~g~~~i~~d~~~iD~~~~~sqK~l~gppG~~~v~~s~~~le~~~~~~~~~dl~~~~~~~~~~~~~ 227 (348)
T d1iuga_ 148 EKNPEGLVGADMVTSLLVGEVALEAMGVDAAASGSQKGLMCPPGLGFVALSPRALERLKPRGYYLDLARELKAQKEGESA 227 (348)
T ss_dssp HHCTTCEEEEECTTTBTTBCCCSGGGTCSEEEEESSSTTCCCSCEEEEEECHHHHHTCCCCSSTTCHHHHHHHHTTTCCS
T ss_pred hhhccceeechhhhcccccccccccccCCEEEeccccceecCCceeeeeechHHHhhhcccccccchhhhhhhhccCccc
Confidence 87 489999999999999999999999999999999 569999999999998877776521111 11234456
Q ss_pred cCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEc-ccChhHHHHHh--
Q psy15216 234 GTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN-FIEGESLLMAI-- 310 (2602)
Q Consensus 234 gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~L-- 310 (2602)
+||++..++++.+||+.......+..++.+.....++..+.. .|+.+... .+++.++.+.+| +.+..++...|
T Consensus 228 ~Tp~v~~i~~l~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~--~gl~~~~~--~~s~~v~~~~~P~g~~~~~~~~~l~~ 303 (348)
T d1iuga_ 228 WTPAINLVLAVAAVLEEVLPRLEEHLALKAWQNALLYGVGEE--GGLRPVPK--RFSPAVAAFYLPEGVPYARVKEAFAQ 303 (348)
T ss_dssp SCCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHH--TTCEESCS--SBCTTCEEEECCTTCCHHHHHHHHHT
T ss_pred ccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhh--hhhccChh--hcCCeEEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999865544555555555555555555544 57877643 345667778876 46778887777
Q ss_pred CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 311 KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 311 ~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
+||.+.+|..... +..+||+...+++.+|+++++++|++.
T Consensus 304 ~gi~i~~G~~~l~-------------------~~~~RIg~mG~~~~~d~~~~~~~l~~~ 343 (348)
T d1iuga_ 304 RGAVIAGGQGPLK-------------------GKVFRLSLMGAYDRYEALGVAGMFREV 343 (348)
T ss_dssp TTEECEECCGGGT-------------------TTEEEECCCSSCCHHHHHHHHHHHHHH
T ss_pred CCeEEEcCccccC-------------------CCEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 7999887754322 368999977789999999999999974
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.91 E-value=2.2e-23 Score=266.09 Aligned_cols=315 Identities=17% Similarity=0.141 Sum_probs=239.4
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCC
Q psy15216 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK 87 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd 87 (2602)
|+|+.+++++.+++.....|+.. ....++|+++|+++++++++|++|+|+++|++.++.++. .+||
T Consensus 38 ~~p~~i~~al~~~l~~~~~Y~~~----------~G~~elr~aiA~~~~~~~~~Iiit~G~~~al~~~~~~l~----~~~d 103 (368)
T d1v2da_ 38 PPPPFLLEAVRRALGRQDQYAPP----------AGLPALREALAEEFAVEPESVVVTSGATEALYVLLQSLV----GPGD 103 (368)
T ss_dssp CCCHHHHHHHHHHTTTSCSCCCT----------TCCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHHC----CTTC
T ss_pred CCCHHHHHHHHHHhhcccCCCCC----------cCCHHHHHHHHhhcccCCcceeeccchHHHHHHHhhccc----cccc
Confidence 67899999999988765445443 124678999999999999999999999999999999998 8999
Q ss_pred EEEEcCCCCcccHHHHHHHHhCCcEEEEeccC---CCCccChHHHHhhccCCceEEEEecccCccccccc---HHHHHHH
Q psy15216 88 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPK---NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIGEL 161 (2602)
Q Consensus 88 ~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~---~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~---l~~I~~l 161 (2602)
.|++++|.|+.+...+..+ |..++.++++ ..+.+|++.++++++++++++++++||||||.+++ +++|+++
T Consensus 104 ~v~~~~p~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~~~~p~NPtG~~~~~~~l~~l~~~ 180 (368)
T d1v2da_ 104 EVVVLEPFFDVYLPDAFLA---GAKARLVRLDLTPEGFRLDLSALEKALTPRTRALLLNTPMNPTGLVFGERELEAIARL 180 (368)
T ss_dssp EEEEEESCCTTHHHHHHHT---TCEEEEEECEEETTEEECCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHH
T ss_pred cccccCCcchhhhhHHHhc---CCccceeccccccccccCCHHHHHHhhccCceEEEEcCCCCcccccCCHHHHHHHHHH
Confidence 9999999999998877766 8888877764 34679999999999999999999999999999998 6678888
Q ss_pred HHhcCCEEEEecccccccccccC-----CCCCccEEEeccccccCCCC--cEEEEEecCCCCcccceecCCCcccccccc
Q psy15216 162 CRSKGVIFHCDAAQAVGKIDINI-----QNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSG 234 (2602)
Q Consensus 162 a~~~g~~livD~a~a~g~~~~dl-----~~~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~g 234 (2602)
|++||+++++|+++......... ......+++.|++|.++++| +||++.++++++.+..... ....
T Consensus 181 a~~~~i~ii~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sk~~~~~G~R~g~~~~~~~~~~~~~~~~~-------~~~~ 253 (368)
T d1v2da_ 181 ARAHDLFLISDEVYDELYYGERPRRLREFAPERTFTVGSAGKRLEATGYRVGWIVGPKEFMPRLAGMRQ-------WTSF 253 (368)
T ss_dssp HHHTTCEEEEECTTTTCBSSSCCCCHHHHCTTTEEEEEEHHHHTTCGGGCCEEEECCTTTHHHHHHHHH-------HHTS
T ss_pred HHHcCCeeeechhhhhhcccccccccccccccccceeecccccccccccccccccccccccchhhhhhh-------cccc
Confidence 99999999999988654322211 11223567788999777666 8999999887766654321 1123
Q ss_pred CcchhHHHHHHHHHHHH--HHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcccChhHHHHHhCC
Q psy15216 235 TLATHQIVGMGEAFRLA--RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIKD 312 (2602)
Q Consensus 235 t~~~~~~~al~~al~~~--~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~g 312 (2602)
.++.....++..++... ..+++..+.+++++++++.+.|.+ .|+++..+... ..+++.++..+..+++.+ +|
T Consensus 254 ~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~g~~~~~p~g~---~~~~~~l~~~~~~~ll~~-~g 327 (368)
T d1v2da_ 254 SAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRA--MGLRVYVPEGT---YFLMAELPGWDAFRLVEE-AR 327 (368)
T ss_dssp SCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH--TTCCEECCSBS---SEEEEECTTCCHHHHHHH-TC
T ss_pred ccccccccccccccccccchhhHHHHHHHHHHhhhhhhhhHHh--cCcEEecCCce---eEEEEeCCccHHHHHHHh-CC
Confidence 34444444444565532 245788888889999999999987 58887755432 344555666665555443 79
Q ss_pred eEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 313 IAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 313 I~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
|.+++|..|... +..++++|||++ ++++++++++++|++.
T Consensus 328 I~v~pg~~F~~~---------------~~~~~~iRis~~--~~~e~i~~ai~rL~~~ 367 (368)
T d1v2da_ 328 VALIPASAFYLE---------------DPPKDLFRFAFC--KTEEELHLALERLGRV 367 (368)
T ss_dssp EECEEGGGGCSS---------------SCCTTEEEEECC--SCHHHHHHHHHHHHHH
T ss_pred EEEEechhhCCC---------------CCCCCEEEEEec--CCHHHHHHHHHHHHHh
Confidence 999999887542 123489999987 5889999999999863
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Probab=99.90 E-value=2.9e-23 Score=265.97 Aligned_cols=317 Identities=13% Similarity=0.072 Sum_probs=228.4
Q ss_pred CCCHHHHHHHHHHHhhhc-CCCCCCCcchhhhHHHHHHHHHHHHHHHhC--CCCCcEEEeCCHHHHHHHHHHhccccccc
Q psy15216 8 PIDPRVVDKMIPYLRVQF-GNPASRNHIYGWTAEKAIEKARNEVAQLIY--ADPREIIWTSGATESNNLAIKGAAHFYKK 84 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~-~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g--~~~~~Iv~t~g~T~al~~~~~~l~~~~~~ 84 (2602)
++|+.+.+++.+++.... .|+.. ....++.+.+.+++.+.+| +++++|++|+|+++|+..++.++. +
T Consensus 43 ~~p~~v~~a~~~~~~~~~~~Y~~~------~G~~~lR~aia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~~----~ 112 (388)
T d1j32a_ 43 NTPKHIVEAAKAALEQGKTRYGPA------AGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAMI----E 112 (388)
T ss_dssp CCCHHHHHHHHHHHHTTCCSCCCT------TCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHC----C
T ss_pred CCCHHHHHHHHHHHhcCCCCCCCC------CCCHHHHHHHHHHHHHhcccCCCCceEEEcCCHHHHHHHHHHHHh----C
Confidence 678999999999887521 12211 1112233334444444445 477899999999999999999998 8
Q ss_pred CCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCC--CCccChHHHHhhccCCceEEEEecccCccccccc---HHHHH
Q psy15216 85 RGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIG 159 (2602)
Q Consensus 85 ~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~---l~~I~ 159 (2602)
|||.|++++|.|+.+...+... |.+++.++... ++.+|++++++.++++++++++++||||||.+++ +++|+
T Consensus 113 ~gd~Vlv~~P~y~~~~~~~~~~---~~~~v~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~P~NPTG~~~~~~~~~~l~ 189 (388)
T d1j32a_ 113 PGDEVIIPAPFWVSYPEMVKLA---EGTPVILPTTVETQFKVSPEQIRQAITPKTKLLVFNTPSNPTGMVYTPDEVRAIA 189 (388)
T ss_dssp TTCEEEEESSCCTHHHHHHHHT---TCEEEEECCCGGGTTCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred CCCEEEEcCCCcHHHHHHHHHh---cCeEEEEecccccccCCCHHHHHHhCCCCCeEEEECCCCCCCCcccchhhhhhhh
Confidence 9999999999999988777655 88888888654 4579999999999999999999999999999999 55677
Q ss_pred HHHHhcCCEEEEeccccccccc----ccCCCC-----CccEEEeccccccCCCC--cEEEEEecCCCCcccceecCCCcc
Q psy15216 160 ELCRSKGVIFHCDAAQAVGKID----INIQNY-----KVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHE 228 (2602)
Q Consensus 160 ~la~~~g~~livD~a~a~g~~~----~dl~~~-----~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g~~~~ 228 (2602)
++|++||+++|+|++|+..... ..+... +..+++.|+||.||++| +||++.++++++.+.....
T Consensus 190 ~~~~~~~~~iI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~GlRvG~~~~~~~~~~~~~~~~~----- 264 (388)
T d1j32a_ 190 QVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWRVGFLAGPVPLVKAATKIQG----- 264 (388)
T ss_dssp HHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTTCCEEEECCHHHHHHHHHHHH-----
T ss_pred cccccCCeEEEchhhhhcccccCCCCCCHHHhCcccccceeEecCChhhhhcchhHeEEEEECHHHHHHHHHhhh-----
Confidence 8899999999999998532211 111111 23588899999998888 8999998876665543221
Q ss_pred ccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc--cChhHH
Q psy15216 229 YGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF--IEGESL 306 (2602)
Q Consensus 229 ~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~--~~~~~~ 306 (2602)
.....++.....++..++.....++++.+.++++.++.+.+.|.+ .+++.+..|... ..+++.++. .+..++
T Consensus 265 --~~~~~~~~~~q~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~g~~~~~p~gg---~~l~~~l~~~~~~~~~~ 338 (388)
T d1j32a_ 265 --HSTSNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNA-MPGLECPKPDGA---FYMFPSIAKTGRSSLDF 338 (388)
T ss_dssp --TTTCSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHT-CTTCBCCCCCBT---TEECCBCGGGTCCHHHH
T ss_pred --hccccccHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHh-CCCCEecCCCce---EEEEEECCCCCCCHHHH
Confidence 112344445555554555433456788888999999999999987 677776544322 222333432 345566
Q ss_pred HHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 307 LMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 307 ~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
...| +||.+.+|..|... +++|++++ +++++++..+++|++.
T Consensus 339 ~~~ll~~~gV~v~pG~~F~~~-------------------~~~Rls~~--~~~e~l~~al~rl~~~ 383 (388)
T d1j32a_ 339 CSELLDQHQVATVPGAAFGAD-------------------DCIRLSYA--TDLDTIKRGMERLEKF 383 (388)
T ss_dssp HHHHHHHHCEECEEGGGGTCT-------------------TBEEEECC--SCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCEEEEeccccCCC-------------------CeEEEEEe--CCHHHHHHHHHHHHHH
Confidence 6655 59999999877542 89999997 5889999999998863
|
| >d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 3-hydroxykynurenine transaminase species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]
Probab=99.90 E-value=2.2e-23 Score=268.42 Aligned_cols=337 Identities=17% Similarity=0.234 Sum_probs=257.0
Q ss_pred eceeeeccCCCCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCc-EEEeCCHHHHHHHH
Q psy15216 1392 PYTNIVFKDATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE-IIWTSGATESNNLA 1470 (2602)
Q Consensus 1392 P~~~v~L~~~~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~-iv~t~gaT~al~~a 1470 (2602)
|.. ..+....+..++++++++.. +.. ++.+..+.++++++|+.+++++|++..+ |+|++|+|.+++.+
T Consensus 16 ~~~-~l~~PGP~~~~~~V~~Am~~--------~~~--~hr~~ef~~i~~~~r~~L~~ll~~~~~~~i~~~gsgT~a~ea~ 84 (388)
T d2ch1a1 16 PEK-IMMGPGPSNCSKRVLTAMTN--------TVL--SNFHAELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAM 84 (388)
T ss_dssp CCC-BCCSSSSCCCCHHHHHHTTS--------CCC--CTTCHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHH
T ss_pred Ccc-eeeeCCCCCCCHHHHHHhCc--------CCC--CCCCHHHHHHHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHH
Confidence 543 34455667778888887632 211 3346788899999999999999996554 66778999999999
Q ss_pred HHhhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhc-cCCceEEEEecccccccccc
Q psy15216 1471 IKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKI-CSDTILVSVMLVNNEIGVIQ 1549 (2602)
Q Consensus 1471 l~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i-~~~t~lv~l~~~~n~tG~~~ 1549 (2602)
+.++. .+|+++++....+.+.. ....+...+.....+...+....+.+.+++.+ ..++++++++|.+|.||...
T Consensus 85 ~~~l~----~~~~~vl~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~t~tG~~~ 159 (388)
T d2ch1a1 85 LSNLL----EEGDRVLIAVNGIWAER-AVEMSERYGADVRTIEGPPDRPFSLETLARAIELHQPKCLFLTHGDSSSGLLQ 159 (388)
T ss_dssp HHHHC----CTTCEEEEEESSHHHHH-HHHHHHHTTCEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEESEETTTTEEC
T ss_pred HHHhc----ccccccccccccccccc-chhhhhhhcccccccccccccccchhhhhhhhccCCcceeeeeeccccccccc
Confidence 99997 78999999988887754 34445566888888887777677777777766 46899999999999999999
Q ss_pred ChHHHHHHhhhcCCEEEEecccccCcccccCCCCCccEEEEcccc-ccCCCceEEEEEecCCCCccccccc---------
Q psy15216 1550 PILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIH--------- 1619 (2602)
Q Consensus 1550 ~l~~I~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K-~~gp~G~G~l~~~~~~~~~l~~~~~--------- 1619 (2602)
|+++|.++||++|+++++|++|++|..++++.++++|++++|.|| ++||+|+|+++++++..+.+.+...
T Consensus 160 ~~~~i~~~~~~~~~~~~vD~~ss~g~~pid~~~~~~d~~~~s~~K~~~gp~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (388)
T d2ch1a1 160 PLEGVGQICHQHDCLLIVDAVASLCGVPFYMDKWEIDAVYTGAQKVLGAPPGITPISISPKALDVIRNRRTKSKVFYWDL 239 (388)
T ss_dssp CCTTHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCCEEECCCC-CCCCCSSCEEEEECHHHHHHHHTCSSCCSCGGGCH
T ss_pred chhhhcchhccccceeeeeeeecccccccchhccCceEEEEccccccCCCCeEEEEeccHHHHHhhhcccCccccccccc
Confidence 999999999999999999999999999999999999999999999 6789999999999765443222111
Q ss_pred -------cCCccccCCCCCcchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcCCcEEE-eCCCCCCCCceE
Q psy15216 1620 -------GGGHEYGLRSGTLATHQIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIEEIYI-NGDMNNRIPHNL 1690 (2602)
Q Consensus 1620 -------g~~~~~~~~~gt~~~~~~~al~~aL~~~-~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i-~~~~~~~~~~~~ 1690 (2602)
..........+|++...+.++..+++.. ..+......+......+++..+.. .++.. ...+..+++..+
T Consensus 240 ~~~~~~~~~~~~~~~~~~t~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~rs~~v~ 317 (388)
T d2ch1a1 240 LLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGK--MGLDIFVKDPRHRLPTVT 317 (388)
T ss_dssp HHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH--HTCCBSSCSGGGBCTTEE
T ss_pred hhhhhhhcccccccccCccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhh--cccccccCCHHHhCCeEE
Confidence 1112234456788999999998888844 345666666666666666666655 22332 233444567777
Q ss_pred EEEEe-cCCcHHHHHhc---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEe-cCCCCCHHHHHHHHHHHHHh
Q psy15216 1691 NISFN-FIEGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFT-IGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1691 ~~~~~-~~~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls-~~~~~t~edid~li~~L~~~ 1765 (2602)
.|.+| +.+..++...| ++|.+++|.++... +.+||| ++.++|.|||++++++|++.
T Consensus 318 ~~~~p~g~~~~~l~~~l~~~~gI~v~~G~~~~~~-------------------~~~RIs~~g~~~t~edI~~ll~alke~ 378 (388)
T d2ch1a1 318 GIMIPKGVDWWKVSQYAMNNFSLEVQGGLGPTFG-------------------KAWRVGIMGECSTVQKIQFYLYGFKES 378 (388)
T ss_dssp EEECCTTCCHHHHHHHHHHHHCBCCBCCCGGGTT-------------------TEEEEECCGGGCSHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHhhcCCEEEeCCCccccC-------------------CEEEEcCCcCCCCHHHHHHHHHHHHHH
Confidence 78886 46777777666 58999988776443 689999 67889999999999999984
|
| >d1yuwa1 b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: DnaK species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.90 E-value=5.9e-24 Score=228.02 Aligned_cols=128 Identities=45% Similarity=0.729 Sum_probs=124.3
Q ss_pred ceeeeccccccceEEeeccEEEEEEecCCcCCCCcEEEEEeecccccceeEEEeecCcccccCCceeEEEEeeCCCCCCC
Q psy15216 2403 NFLLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPA 2482 (2602)
Q Consensus 2403 ~~~~~d~~~~~~gi~~~~~~~~~ii~k~t~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~~~~~~~ 2482 (2602)
++++.||+|+|+||++.+|.|.++|+||++||+++++.|+|..|||+.+.|.|||||+..+.+|.+||+|.|+++||.|+
T Consensus 6 ~~~l~DV~p~slGie~~gg~~~~iI~rnt~iP~~~~~~f~T~~d~Q~~v~i~i~qGe~~~~~~n~~lg~f~l~~ip~~~~ 85 (159)
T d1yuwa1 6 DLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPR 85 (159)
T ss_dssp SSCCCCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCSEEEEEEEESSSSBGGGSEEEEEEEEECCCCCST
T ss_pred eEEEEEecCCceEEEEcCCEEEEEEcCCcccceeeeEEEeeccCCCcEEEEEEEcCchhhccCccEEEEEEECCCCcCCC
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEEEEEcCCccEEEEEEeecCCcEEEEEEecC-CCCChHHHhcc
Q psy15216 2483 GRARIKVTYQVDADGLLSIFAYEKISGKKKFITIKPF-YNMNLDEIKNG 2530 (2602)
Q Consensus 2483 g~~~i~v~f~id~~g~l~V~a~~~~tg~~~~~~i~~~-~~l~~~ei~~~ 2530 (2602)
|.++|+|+|+||.||+|+|+|+++.||++.+++|... +.||++||++.
T Consensus 86 G~~~I~Vtf~id~nGil~V~A~d~~Tg~~~~i~I~~~~~~Ls~eEIek~ 134 (159)
T d1yuwa1 86 GVPQIEVTFDIDANGILNVSAVDKSTGKENKITITNDKGRLSKEDIERM 134 (159)
T ss_dssp TCCCEEEEEEECTTCCEEEEEEETTTCCEEEEEECCCSSCSCHHHHHHH
T ss_pred CCceEEEEEEEcCCCeEEEEEEEcCCCCeEEEEEecCCCCCCHHHHHHH
Confidence 9999999999999999999999999999999999987 66999999963
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Probab=99.90 E-value=3.4e-23 Score=265.34 Aligned_cols=312 Identities=14% Similarity=0.083 Sum_probs=224.2
Q ss_pred CCCHHHHHHHHHHHhh-hcCCCCCCCcchhhhHHHHHHHHHHHHHHHh----C--CCCCcEEEeCCHHHHHHHHHHhccc
Q psy15216 8 PIDPRVVDKMIPYLRV-QFGNPASRNHIYGWTAEKAIEKARNEVAQLI----Y--ADPREIIWTSGATESNNLAIKGAAH 80 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~-~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~----g--~~~~~Iv~t~g~T~al~~~~~~l~~ 80 (2602)
|+|+.+.+++.+++.+ .++|+.. . ...++|+.+++++ | +++++|++|+|+++|+..++.++.
T Consensus 44 ~~p~~i~~a~~~~~~~~~~~Y~~~------~----G~~~lR~~ia~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~- 112 (382)
T d1b5pa_ 44 DTPEHVKEAARRALAQGKTKYAPP------A----GIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAIL- 112 (382)
T ss_dssp CCCHHHHHHHHHHHHTTCCSCCCT------T----CCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHhcCCcCCCCC------C----CCHHHHHHHHhhhhhhcccccccccceecCCHHHHHHHHHHHhC-
Confidence 6789999999998865 2233322 1 1234556666555 4 478899999999999999999998
Q ss_pred ccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCC--CCccChHHHHhhccCCceEEEEecccCccccccc---H
Q psy15216 81 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---I 155 (2602)
Q Consensus 81 ~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~---l 155 (2602)
++||.|++++|.|+.+...++.+ |.+++.++..+ ++.+|+++++++++++++++++++||||||.+++ +
T Consensus 113 ---~~gd~vl~~~P~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~i~~~~P~NPTG~~~s~~~~ 186 (382)
T d1b5pa_ 113 ---DPGDEVIVLSPYWVSYPEMVRFA---GGVVVEVETLPEEGFVPDPERVRRAITPRTKALVVNSPNNPTGAVYPKEVL 186 (382)
T ss_dssp ---CTTCEEEEEESCCTHHHHHHHHT---TCEEEEEECCGGGTTCCCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHH
T ss_pred ---CCCCEEEECCCCcHHHHHHHHHh---cCeEEEEecccccccCCCHHHHHHhCCCCCeEEEECCCCCCcchhCCHHHH
Confidence 89999999999999988777666 99999998754 4578999999999999999999999999999998 5
Q ss_pred HHHHHHHHhcCCEEEEecccccccc---cc-cC-CCCCccEEEeccccccCCCC--cEEEEEecCCCCcccceecCCCcc
Q psy15216 156 LEIGELCRSKGVIFHCDAAQAVGKI---DI-NI-QNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHE 228 (2602)
Q Consensus 156 ~~I~~la~~~g~~livD~a~a~g~~---~~-dl-~~~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g~~~~ 228 (2602)
++|+++|++||+++|+|++|+.-.. +. .. ......+++.|++|.|+.+| +||+++++++++.+.....
T Consensus 187 ~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~GlR~G~~~~~~~~i~~~~~~~~----- 261 (382)
T d1b5pa_ 187 EALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFAMTGWRIGYACGPKEVIKAMASVSR----- 261 (382)
T ss_dssp HHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTTTEEEEEESTTTTTCGGGCCEEEECCHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHcCeEEEEEccccceecCCCCCCHHHcCCCCEEEEecchhhccCcHhheEEEEECHHHHHHHHHHHH-----
Confidence 6688889999999999999863211 11 01 11123478889999999888 8999998876665543221
Q ss_pred ccccccCcchhHHHHHHHHHH---HHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc--cCh
Q psy15216 229 YGLRSGTLATHQIVGMGEAFR---LARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF--IEG 303 (2602)
Q Consensus 229 ~~~~~gt~~~~~~~al~~al~---~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~--~~~ 303 (2602)
....+++.....++..++. .........++.++..++.+.+.+.. .++.+..|.. ....++.++. .+.
T Consensus 262 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~g~~~~~p~g---g~~~~~~~~~~~~~~ 334 (382)
T d1b5pa_ 262 --QSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTA--LGLKAVRPSG---AFYVLMDTSPIAPDE 334 (382)
T ss_dssp --TTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTCCBCCCSB---TTEEEEECTTTCSSH
T ss_pred --hcccCcccccccccccccccccchhHHHHHHHHHHHhhhhHHHHHHhh--cCCeEecCCc---eEEEeEeCCCCCCCH
Confidence 1123344444333334443 23344567777778888888888876 4555543322 2233344433 244
Q ss_pred hHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 304 ESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 304 ~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
..+.+.| +||.+.+|..|... +++||+++ .++++++..+++|++.
T Consensus 335 ~~~~~~l~e~gV~v~PG~~F~~~-------------------~~iRis~~--~~~e~l~~al~rl~~~ 381 (382)
T d1b5pa_ 335 VRAAERLLEAGVAVVPGTDFAAF-------------------GHVRLSYA--TSEENLRKALERFARV 381 (382)
T ss_dssp HHHHHHHHHTTEECEESGGGTCT-------------------TEEEEECC--SCHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHCCEEEEeCcccCCC-------------------CeEEEEEc--CCHHHHHHHHHHHHHh
Confidence 4555555 89999999877543 79999997 4789999999999863
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.90 E-value=1e-22 Score=259.85 Aligned_cols=267 Identities=15% Similarity=0.176 Sum_probs=195.1
Q ss_pred CCCCCHHHHHHHHHHHhhhcC--CCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccc
Q psy15216 6 TTPIDPRVVDKMIPYLRVQFG--NPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYK 83 (2602)
Q Consensus 6 ~~~~p~~v~~a~~~~l~~~~~--~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~ 83 (2602)
.+..++.+.+++.++...... +...+. .......+..+.+++.+|+++|++ ++++|+|+|+|+.+++.++.
T Consensus 11 ~~~l~~~a~~a~~~~~~g~~~~~~~~~~~-~~~~~~~~l~~~~~~~~A~~~g~e--~~~~t~g~t~a~~~~~~al~---- 83 (364)
T d2e7ja1 11 GGKLTEEARQALLEWGDGYSVCDFCTTGR-LDEIKTPPIHDFIHNQLPKFLGCD--VARVTNGAREAKFAVMHSLA---- 83 (364)
T ss_dssp TCCCCHHHHHHHHHC---------------------CCHHHHHHTHHHHHTTSS--EEEEESSHHHHHHHHHHHHC----
T ss_pred CCcCCHHHHHHHHHHhcCCchhccccccc-cccccChHHHHHHHHHHHHHhCcC--EEEEECcHHHHHHHHHHHHh----
Confidence 356778889988875432110 000000 000111236778999999999974 79999999999999999998
Q ss_pred cCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCC--CCccChHHHHhhccC-----CceEEEEecccCcccccccHH
Q psy15216 84 KRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICS-----DTILVSVMLVNNEIGVIQPIL 156 (2602)
Q Consensus 84 ~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~ld~e~l~~~i~~-----~tklv~i~~~~npTG~~~~l~ 156 (2602)
+|||+|+++.++|+++...+..+ |++++.+|+++ ++.+|++++++++++ ++++|++++++|+||.+.|++
T Consensus 84 ~~gd~Vi~~~~~h~s~~~~~~~~---g~~v~~v~~~~~~~~~i~~~~l~~~i~~~~k~~~~~lv~i~~~~n~tG~~~~l~ 160 (364)
T d2e7ja1 84 KKDAWVVMDENCHYSSYVAAERA---GLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVK 160 (364)
T ss_dssp CTTCEEEEETTCCHHHHHHHHHT---TCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCCHH
T ss_pred CCCcEEEeecccccccchHHHhc---cceEEEeeeccccccccCHHHHHhhhhhhcccCCceEEEeecCCCCCceeecch
Confidence 89999999999999988776655 99999999864 568999999999953 356999999999999999999
Q ss_pred HHHHHHHhcCCEEEEecccccccccccCCCCCccEEEeccccccCCC-CcEEEEEecCCCCcccceecCC-Ccccccccc
Q psy15216 157 EIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPK-GIGALYIRRNPRTRIEAQIHGG-GHEYGLRSG 234 (2602)
Q Consensus 157 ~I~~la~~~g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K~~Gp~-G~G~l~~~~~~~~~l~~~~~g~-~~~~~~~~g 234 (2602)
+|+++|++||+++++|++|+.|..++++.++++|++++|+||++|++ |+|+++.+++..+.+.+....+ .....+..+
T Consensus 161 ~I~~ia~~~~i~livD~a~~~g~~~~~~~~~g~D~~~~S~~K~~~~~g~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (364)
T d2e7ja1 161 KIAKVCSEYDVPLLVNGAYAIGRMPVSLKEIGADFIVGSGHKSMAASGPIGVMGMKEEWAEIVLRRSEKYKNKEVELLGC 240 (364)
T ss_dssp HHHHHHHTTTCCEEEECTTTBTTBCCCHHHHTCSEEEEEHHHHSSCCSSCEEEEECTTTTTTTTCBCSSCTTSBGGGTTC
T ss_pred hheeccccccchhhccccchhhhhhhcccccccceeeeccccccCCCCCEEEEEECHHHHHHHHhhccccCccccccccc
Confidence 99999999999999999999999999888889999999999977755 5899999998877664432221 112223334
Q ss_pred CcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCC
Q psy15216 235 TLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGD 285 (2602)
Q Consensus 235 t~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~ 285 (2602)
+......+++.++++...+..+.... ..+.++++.+.+.+ .++..+..
T Consensus 241 ~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~l~~--~g~~~~~~ 288 (364)
T d2e7ja1 241 TARGATIITLMASFPHVRERIKRWDE-EVEKARRFAAEMEK--LGIKQLGD 288 (364)
T ss_dssp CCCSHHHHHHHHHHHHHHHHGGGHHH-HHHHHHHHHHHHHH--TTCEEESS
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH--cCCeecCC
Confidence 55555566666677654444333332 34566678888876 35666544
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.90 E-value=6.3e-23 Score=261.77 Aligned_cols=316 Identities=17% Similarity=0.145 Sum_probs=237.8
Q ss_pred CCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCC
Q psy15216 1403 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRG 1482 (2602)
Q Consensus 1403 ~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~g 1482 (2602)
.++|+.+++++.+.++....|+... ...++|+++++++++++++|++|+|++++++.++.++. ++|
T Consensus 37 ~~~p~~i~~al~~~l~~~~~Y~~~~----------G~~elr~aiA~~~~~~~~~Iiit~G~~~al~~~~~~l~----~~~ 102 (368)
T d1v2da_ 37 NPPPPFLLEAVRRALGRQDQYAPPA----------GLPALREALAEEFAVEPESVVVTSGATEALYVLLQSLV----GPG 102 (368)
T ss_dssp SCCCHHHHHHHHHHTTTSCSCCCTT----------CCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHHC----CTT
T ss_pred CCCCHHHHHHHHHHhhcccCCCCCc----------CCHHHHHHHHhhcccCCcceeeccchHHHHHHHhhccc----ccc
Confidence 4678899999999887654455431 24678999999999999999999999999999999987 899
Q ss_pred CEEEEcCCCCcchHHHHHHHHhCCcEEEEeccC---CCCCcChhHHHhhccCCceEEEEeccccccccccC---hHHHHH
Q psy15216 1483 KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK---NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIGE 1556 (2602)
Q Consensus 1483 d~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~---~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~---l~~I~~ 1556 (2602)
|.|++++|.|+.+...+..+ |..++.++.+ .++.+|++.++++++++++++++++|+||||.+++ +++|++
T Consensus 103 d~v~~~~p~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~~~~p~NPtG~~~~~~~l~~l~~ 179 (368)
T d1v2da_ 103 DEVVVLEPFFDVYLPDAFLA---GAKARLVRLDLTPEGFRLDLSALEKALTPRTRALLLNTPMNPTGLVFGERELEAIAR 179 (368)
T ss_dssp CEEEEEESCCTTHHHHHHHT---TCEEEEEECEEETTEEECCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred ccccccCCcchhhhhHHHhc---CCccceeccccccccccCCHHHHHHhhccCceEEEEcCCCCcccccCCHHHHHHHHH
Confidence 99999999999998877766 8888887764 24569999999999999999999999999999998 778899
Q ss_pred HhhhcCCEEEEecccccCcccccCC-----CCCccEEEEccccccCCCc--eEEEEEecCCCCccccccccCCccccCCC
Q psy15216 1557 LCRSKGVIFHCDAAQAVGKIDINIQ-----NYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRS 1629 (2602)
Q Consensus 1557 ia~~~gi~vivD~a~~~g~~~~~l~-----~~~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~ 1629 (2602)
+|++||+++++|+++.......... .....+++.|++|.++++| +||++.++++++.+..... ...
T Consensus 180 ~a~~~~i~ii~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sk~~~~~G~R~g~~~~~~~~~~~~~~~~~-------~~~ 252 (368)
T d1v2da_ 180 LARAHDLFLISDEVYDELYYGERPRRLREFAPERTFTVGSAGKRLEATGYRVGWIVGPKEFMPRLAGMRQ-------WTS 252 (368)
T ss_dssp HHHHTTCEEEEECTTTTCBSSSCCCCHHHHCTTTEEEEEEHHHHTTCGGGCCEEEECCTTTHHHHHHHHH-------HHT
T ss_pred HHHHcCCeeeechhhhhhcccccccccccccccccceeecccccccccccccccccccccccchhhhhhh-------ccc
Confidence 9999999999999886543222111 1224567778888666666 8999999887665543321 112
Q ss_pred CCcchhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecCCcHHHHHhcC
Q psy15216 1630 GTLATHQIVGMGEAFRLA--RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAIK 1707 (2602)
Q Consensus 1630 gt~~~~~~~al~~aL~~~--~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 1707 (2602)
.+.+...+.++..++... ...++..+++++++++++.+.|.+ .|+.+..+... ....+.++..+..+++.+ +
T Consensus 253 ~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~g~~~~~p~g~---~~~~~~l~~~~~~~ll~~-~ 326 (368)
T d1v2da_ 253 FSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRA--MGLRVYVPEGT---YFLMAELPGWDAFRLVEE-A 326 (368)
T ss_dssp SSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH--TTCCEECCSBS---SEEEEECTTCCHHHHHHH-T
T ss_pred cccccccccccccccccccchhhHHHHHHHHHHhhhhhhhhHHh--cCcEEecCCce---eEEEEeCCccHHHHHHHh-C
Confidence 234444444455666532 235778888889999999999988 47777644322 223344455555555444 8
Q ss_pred CEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1708 DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1708 gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
||.+++|+.|... ....+++|||++ ++++++++++++|++.
T Consensus 327 gI~v~pg~~F~~~---------------~~~~~~iRis~~--~~~e~i~~ai~rL~~~ 367 (368)
T d1v2da_ 327 RVALIPASAFYLE---------------DPPKDLFRFAFC--KTEEELHLALERLGRV 367 (368)
T ss_dssp CEECEEGGGGCSS---------------SCCTTEEEEECC--SCHHHHHHHHHHHHHH
T ss_pred CEEEEechhhCCC---------------CCCCCEEEEEec--CCHHHHHHHHHHHHHh
Confidence 9999999988542 112489999986 5889999999999863
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.90 E-value=2.3e-22 Score=256.62 Aligned_cols=266 Identities=14% Similarity=0.159 Sum_probs=192.1
Q ss_pred CCCCHHHHHHHHHHHhhccC--CCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhcc
Q psy15216 1403 TPIDPRVVDKMIPYLRVQFG--NPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKK 1480 (2602)
Q Consensus 1403 ~~~~~~v~eal~~~l~~~~~--np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~ 1480 (2602)
...+++..+++.++.+.... +...+... ......+.+.+++.+|+++|+ +++++|+|+|+|+..++.++. +
T Consensus 12 ~~l~~~a~~a~~~~~~g~~~~~~~~~~~~~-~~~~~~l~~~~~~~~A~~~g~--e~~~~t~g~t~a~~~~~~al~----~ 84 (364)
T d2e7ja1 12 GKLTEEARQALLEWGDGYSVCDFCTTGRLD-EIKTPPIHDFIHNQLPKFLGC--DVARVTNGAREAKFAVMHSLA----K 84 (364)
T ss_dssp CCCCHHHHHHHHHC---------------------CCHHHHHHTHHHHHTTS--SEEEEESSHHHHHHHHHHHHC----C
T ss_pred CcCCHHHHHHHHHHhcCCchhccccccccc-cccChHHHHHHHHHHHHHhCc--CEEEEECcHHHHHHHHHHHHh----C
Confidence 35667788888765432110 00000000 011113577799999999996 479999999999999999997 8
Q ss_pred CCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCC--CCCcChhHHHhhccCC-----ceEEEEeccccccccccChHH
Q psy15216 1481 RGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSD-----TILVSVMLVNNEIGVIQPILE 1553 (2602)
Q Consensus 1481 ~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~id~d~l~~~i~~~-----t~lv~l~~~~n~tG~~~~l~~ 1553 (2602)
|||+|+++.++|+++...+..+ |++++.+|.+. ++.+|+++++++++++ +++|+++|++|+||.+.|+++
T Consensus 85 ~gd~Vi~~~~~h~s~~~~~~~~---g~~v~~v~~~~~~~~~i~~~~l~~~i~~~~k~~~~~lv~i~~~~n~tG~~~~l~~ 161 (364)
T d2e7ja1 85 KDAWVVMDENCHYSSYVAAERA---GLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKK 161 (364)
T ss_dssp TTCEEEEETTCCHHHHHHHHHT---TCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCCHHH
T ss_pred CCcEEEeecccccccchHHHhc---cceEEEeeeccccccccCHHHHHhhhhhhcccCCceEEEeecCCCCCceeecchh
Confidence 9999999999999987776554 99999999763 5779999999999643 468999999999999999999
Q ss_pred HHHHhhhcCCEEEEecccccCcccccCCCCCccEEEEccccccC-CCceEEEEEecCCCCccccccccC-CccccCCCCC
Q psy15216 1554 IGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYG-PKGIGALYIRRNPRTRIEAQIHGG-GHEYGLRSGT 1631 (2602)
Q Consensus 1554 I~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K~~g-p~G~G~l~~~~~~~~~l~~~~~g~-~~~~~~~~gt 1631 (2602)
|.++|++||+++++|++|+.|..++++.++++|++++|+||++| |.|+|+++.++++++.+......+ .....+..++
T Consensus 162 I~~ia~~~~i~livD~a~~~g~~~~~~~~~g~D~~~~S~~K~~~~~g~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (364)
T d2e7ja1 162 IAKVCSEYDVPLLVNGAYAIGRMPVSLKEIGADFIVGSGHKSMAASGPIGVMGMKEEWAEIVLRRSEKYKNKEVELLGCT 241 (364)
T ss_dssp HHHHHHTTTCCEEEECTTTBTTBCCCHHHHTCSEEEEEHHHHSSCCSSCEEEEECTTTTTTTTCBCSSCTTSBGGGTTCC
T ss_pred heeccccccchhhccccchhhhhhhcccccccceeeeccccccCCCCCEEEEEECHHHHHHHHhhccccCcccccccccc
Confidence 99999999999999999999999998888899999999999666 445899999988777654332211 1122233445
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCC
Q psy15216 1632 LATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGD 1681 (2602)
Q Consensus 1632 ~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~ 1681 (2602)
......+++.+++....+.++... ...+.+.++.+.+.+ .++.+...
T Consensus 242 ~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~l~~--~g~~~~~~ 288 (364)
T d2e7ja1 242 ARGATIITLMASFPHVRERIKRWD-EEVEKARRFAAEMEK--LGIKQLGD 288 (364)
T ss_dssp CCSHHHHHHHHHHHHHHHHGGGHH-HHHHHHHHHHHHHHH--TTCEEESS
T ss_pred cchhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH--cCCeecCC
Confidence 555566666667765444333333 234566678888877 35555543
|
| >d1dkza2 b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: DnaK species: Escherichia coli [TaxId: 562]
Probab=99.89 E-value=1.5e-23 Score=212.40 Aligned_cols=118 Identities=48% Similarity=0.733 Sum_probs=114.0
Q ss_pred eeeeccccccceEeeeccEEEEEEecCCCCCCCcEEEEEeccccccceeeeEeecCccccccCceeeeeEecCCCCCCCC
Q psy15216 1008 FLLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAG 1087 (2602)
Q Consensus 1008 ~~~~dv~~~~~gi~~~~~~~~~ii~~~t~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~i~~~~~g 1087 (2602)
+++.||+|+||||++.+|.|.++|+||++||+++++.|+|..|||+.+.|+|||||++.+++|.+||+|.|+++||.|+|
T Consensus 1 i~l~DV~p~slGIe~~~g~~~~iI~rnt~iP~~~t~~f~T~~dnQ~~i~i~v~qGe~~~~~~n~~lg~~~i~~ip~~p~G 80 (118)
T d1dkza2 1 VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVSIHVLQGERKRAADNKSLGQFNLDGINPAPRG 80 (118)
T ss_dssp CCCCCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCSCCTT
T ss_pred CEEEeecCCceeEEEcCCEEEEEEeccccCCCcceEEEEcccCCCceEEEEEeeeeeccccCceEEEEEEEcCCccCCCC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEEEEECCCeeEEEEEEEecCCceEEEEEecCCC
Q psy15216 1088 RARIKVTYQVDADGLLSIFAYEKISGKKKFITIKPFYN 1125 (2602)
Q Consensus 1088 ~~~i~v~f~~d~~g~l~v~a~~~~~g~~~~~~~~~~~~ 1125 (2602)
.++|+|+|+||.||+|+|+|+++.||++.+++|+..++
T Consensus 81 ~~~I~Vtf~iD~nGiL~V~a~d~~tg~~~~~~i~~~~G 118 (118)
T d1dkza2 81 MPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSG 118 (118)
T ss_dssp CSCEEEEEEECTTCCEEEEEEETTTCCEEEEEECTTCS
T ss_pred CcEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEcCCC
Confidence 99999999999999999999999999999999987653
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.89 E-value=2e-22 Score=259.17 Aligned_cols=314 Identities=12% Similarity=0.094 Sum_probs=227.3
Q ss_pred CCCHHHHHHHHHHHhhh-cCCCCCCCcchhhhHHHHHHHHHHHHHHHh----C---CCCCcEEEeCCHHHHHHHHHHhcc
Q psy15216 8 PIDPRVVDKMIPYLRVQ-FGNPASRNHIYGWTAEKAIEKARNEVAQLI----Y---ADPREIIWTSGATESNNLAIKGAA 79 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~-~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~----g---~~~~~Iv~t~g~T~al~~~~~~l~ 79 (2602)
++|+.+.+++.+++... ..|+.. ....++|+++|+++ + .++++|++|+|+++++.+++.++.
T Consensus 38 ~~p~~v~~~~~~a~~~~~~~Y~~~----------~G~~~lr~aia~~~~~~~~~~~~~~~~i~~t~G~~~~l~~~~~~l~ 107 (388)
T d1gdea_ 38 DTPQHIKEYAKEALDKGLTHYGPN----------IGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFL 107 (388)
T ss_dssp CCCHHHHHHHHHHHHTTCCSCCCT----------TCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHHHHTTTC
T ss_pred CCCHHHHHHHHHHHhcCccCCCCC----------cCCHHHHHHHHHHHHhhccccCCChheeeeccCcchHHHHHHHHhc
Confidence 67899999999988752 223222 12355677777665 2 355689999999999999999998
Q ss_pred cccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCC--CCccChHHHHhhccCCceEEEEecccCccccccc---
Q psy15216 80 HFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP--- 154 (2602)
Q Consensus 80 ~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~--- 154 (2602)
+|||.|+++.|.|+.+...+..+ |++++.++.++ ++.+|+++|+++++++++++++++||||||.+++
T Consensus 108 ----~~gd~vlv~~P~y~~~~~~~~~~---g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~~~~P~NPtG~~~s~~~ 180 (388)
T d1gdea_ 108 ----KDGEEVLIPTPAFVSYAPAVILA---GGKPVEVPTYEEDEFRLNVDELKKYVTDKTRALIINSPCNPTGAVLTKKD 180 (388)
T ss_dssp ----CTTCEEEEEESCCTTHHHHHHHH---TCEEEEEECCGGGTTCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHH
T ss_pred ----CCCCEEEECCCCcHHHHHHHHHc---CCEEEEeecccccCCCCCHHHHHHhCccCCeEEEECCCcCCCCCcCCHHH
Confidence 89999999999999998888777 99999998764 4579999999999999999999999999999998
Q ss_pred HHHHHHHHHhcCCEEEEecccccccc----c---ccCCC-CCccEEEeccccccCCCC--cEEEEEecCCCCcccceecC
Q psy15216 155 ILEIGELCRSKGVIFHCDAAQAVGKI----D---INIQN-YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHG 224 (2602)
Q Consensus 155 l~~I~~la~~~g~~livD~a~a~g~~----~---~dl~~-~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g 224 (2602)
+++|+++|++|+++||+|++|+.... . ..+.. .+..+++.|+||.||.+| +||+++++++...+.....
T Consensus 181 ~~~l~~~a~~~~~~vi~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~ii~~~~~~~~~~~~~~- 259 (388)
T d1gdea_ 181 LEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLGFVAAPSWIIERMVKFQM- 259 (388)
T ss_dssp HHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGGCCEEEECCHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHcCCEEEEEcCChhhhhccCCCCChhhccCCCCeEEEEeCChhhccCccccEEEEEeeccchhhhhhccc-
Confidence 56688889999999999999864211 1 11222 234588889999988888 8999999876666544321
Q ss_pred CCccccccccCcchhHHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc--
Q psy15216 225 GGHEYGLRSGTLATHQIVGMGEAFR--LARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-- 300 (2602)
Q Consensus 225 ~~~~~~~~~gt~~~~~~~al~~al~--~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~-- 300 (2602)
....+++.....++..+++ ...........++.+.+..+.+.+.. .++....|.. ...+++.++.
T Consensus 260 ------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~p~g---g~fl~~~l~~~~ 328 (388)
T d1gdea_ 260 ------YNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNE--MGLPTVKPKG---AFYIFPRIRDTG 328 (388)
T ss_dssp ------TTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTCCCCCCCB---TTEECCBCGGGT
T ss_pred ------cccccccccchhhHHHHHhhccchhHHHHHHHHHHHhhhhhhhhhhh--ccccccCCCc---eEEEEEECCCCC
Confidence 1223444444444545664 22234566777778888888888876 3444332321 1223333332
Q ss_pred cChhHHHHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 301 IEGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 301 ~~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
.+..++.+.| +||.+.||..|... .++++||+++ +++++++.++++|++.
T Consensus 329 ~~~~~~~~~ll~e~gV~v~PG~~F~~~-----------------~~~~iRis~~--~~~e~l~~al~rL~~~ 381 (388)
T d1gdea_ 329 LTSKKFSELMLKEARVAVVPGSAFGKA-----------------GEGYVRISYA--TAYEKLEEAMDRMERV 381 (388)
T ss_dssp CCHHHHHHHHHHHTCEECEEGGGGCGG-----------------GTTBEEEECC--SCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCEEEEechhhCCC-----------------CCCEEEEEec--CCHHHHHHHHHHHHHH
Confidence 4566766665 69999999887542 1389999997 4788999999998863
|
| >d1u00a2 b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: Chaperone protein hscA (Hsc66) species: Escherichia coli [TaxId: 562]
Probab=99.89 E-value=4.2e-23 Score=208.55 Aligned_cols=115 Identities=63% Similarity=0.985 Sum_probs=112.2
Q ss_pred eccccccceEeeeccEEEEEEecCCCCCCCcEEEEEeccccccceeeeEeecCccccccCceeeeeEecCCCCCCCCccE
Q psy15216 1011 LDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRAR 1090 (2602)
Q Consensus 1011 ~dv~~~~~gi~~~~~~~~~ii~~~t~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~i~~~~~g~~~ 1090 (2602)
.||+|+||||++.+|.|.++|+||++||+++++.|+|..|+|+.+.|+|||||+..+.+|.+||+|.|+++||+|+|.++
T Consensus 1 lDV~p~slGIe~~gg~~~~iI~rnt~iP~~~t~~f~T~~d~Q~~v~i~V~qGe~~~~~~N~~lg~~~l~~ip~~p~G~~~ 80 (115)
T d1u00a2 1 MDVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDCRSLARFALRGIPALPAGGAH 80 (115)
T ss_dssp CCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEECSSTTCCCEEEEEEECSSSBGGGSEEEEEEEECCCCCCSTTCSC
T ss_pred CCccCcceeEEEcCCEEEEEEcCCCCCCceeeeeEEcCCCCceEEEEEEhhccCcccccceEeeEEEEeCcccCcccccc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCCeeEEEEEEEecCCceEEEEEecCCC
Q psy15216 1091 IKVTYQVDADGLLSIFAYEKISGKKKFITIKPFYN 1125 (2602)
Q Consensus 1091 i~v~f~~d~~g~l~v~a~~~~~g~~~~~~~~~~~~ 1125 (2602)
|+|+|+||.||+|+|+|+++.||++.+++|+.+++
T Consensus 81 I~Vtf~id~nGiL~V~A~d~~tg~~~~i~i~~~~g 115 (115)
T d1u00a2 81 IRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYG 115 (115)
T ss_dssp EEEEEEECTTCCEEEEEEETTTCCEEEEEECCCSC
T ss_pred EEEEEEccCCceEEEEEEECCCCCEeEEEEeCCCC
Confidence 99999999999999999999999999999998764
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.88 E-value=5.3e-22 Score=255.17 Aligned_cols=315 Identities=12% Similarity=0.084 Sum_probs=228.5
Q ss_pred CCCCHHHHHHHHHHHhhc-cCCCCCccchhHHHHHHHHHHHHHHHHHHhC-------CCCCcEEEeCCHHHHHHHHHHhh
Q psy15216 1403 TPIDPRVVDKMIPYLRVQ-FGNPASRNHIYGWTAEKAIEKARNEVAQLIY-------ADPREIIWTSGATESNNLAIKGA 1474 (2602)
Q Consensus 1403 ~~~~~~v~eal~~~l~~~-~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g-------~~~~~iv~t~gaT~al~~al~~l 1474 (2602)
.+.|+.+.+++.+.++.. .+|+.. ....++|++++++++ .++++|++|+|+++++.++++++
T Consensus 37 ~~~p~~v~~~~~~a~~~~~~~Y~~~----------~G~~~lr~aia~~~~~~~~~~~~~~~~i~~t~G~~~~l~~~~~~l 106 (388)
T d1gdea_ 37 FDTPQHIKEYAKEALDKGLTHYGPN----------IGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAF 106 (388)
T ss_dssp SCCCHHHHHHHHHHHHTTCCSCCCT----------TCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHhcCccCCCCC----------cCCHHHHHHHHHHHHhhccccCCChheeeeccCcchHHHHHHHHh
Confidence 467889999999998762 233332 124577888887762 35668999999999999999998
Q ss_pred hhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCC--CCCcChhHHHhhccCCceEEEEeccccccccccC--
Q psy15216 1475 AHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP-- 1550 (2602)
Q Consensus 1475 ~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~-- 1550 (2602)
. ++||+|++++|.|+.+......+ |++++.++.++ ++.+|+++|+++++++++++++++|+||||.+++
T Consensus 107 ~----~~gd~vlv~~P~y~~~~~~~~~~---g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~~~~P~NPtG~~~s~~ 179 (388)
T d1gdea_ 107 L----KDGEEVLIPTPAFVSYAPAVILA---GGKPVEVPTYEEDEFRLNVDELKKYVTDKTRALIINSPCNPTGAVLTKK 179 (388)
T ss_dssp C----CTTCEEEEEESCCTTHHHHHHHH---TCEEEEEECCGGGTTCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHH
T ss_pred c----CCCCEEEECCCCcHHHHHHHHHc---CCEEEEeecccccCCCCCHHHHHHhCccCCeEEEECCCcCCCCCcCCHH
Confidence 7 89999999999999998888777 99999998764 4679999999999999999999999999999998
Q ss_pred -hHHHHHHhhhcCCEEEEecccccCcc----c---ccCCCC-CccEEEEccccccCCCc--eEEEEEecCCCCccccccc
Q psy15216 1551 -ILEIGELCRSKGVIFHCDAAQAVGKI----D---INIQNY-KVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIH 1619 (2602)
Q Consensus 1551 -l~~I~~ia~~~gi~vivD~a~~~g~~----~---~~l~~~-~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~~ 1619 (2602)
+++|+++|++|++++|+|++|+.... . ..+... +..+++.|++|.+|.+| +||++++++.+..+....
T Consensus 180 ~~~~l~~~a~~~~~~vi~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~ii~~~~~~~~~~~~~- 258 (388)
T d1gdea_ 180 DLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLGFVAAPSWIIERMVKFQ- 258 (388)
T ss_dssp HHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGGCCEEEECCHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHcCCEEEEEcCChhhhhccCCCCChhhccCCCCeEEEEeCChhhccCccccEEEEEeeccchhhhhhcc-
Confidence 67788899999999999999863211 1 112222 24578889999888777 899999887665554332
Q ss_pred cCCccccCCCCCcchhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEe--
Q psy15216 1620 GGGHEYGLRSGTLATHQIVGMGEAFR--LARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN-- 1695 (2602)
Q Consensus 1620 g~~~~~~~~~gt~~~~~~~al~~aL~--~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~-- 1695 (2602)
.....+.+.....++..++. ...........++.+.+..+.+.|.. .++....|... ....+.++
T Consensus 259 ------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~p~gg---~fl~~~l~~~ 327 (388)
T d1gdea_ 259 ------MYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNE--MGLPTVKPKGA---FYIFPRIRDT 327 (388)
T ss_dssp ------HTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTCCCCCCCBT---TEECCBCGGG
T ss_pred ------ccccccccccchhhHHHHHhhccchhHHHHHHHHHHHhhhhhhhhhhh--ccccccCCCce---EEEEEECCCC
Confidence 11223444455555556665 22334566777778888888888876 23333322111 11112222
Q ss_pred cCCcHHHHHhc---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1696 FIEGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1696 ~~~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
..+..++...| +||.+.+|..|+.. ..+++||+++ ++.++++.++++|++.
T Consensus 328 ~~~~~~~~~~ll~e~gV~v~PG~~F~~~-----------------~~~~iRis~~--~~~e~l~~al~rL~~~ 381 (388)
T d1gdea_ 328 GLTSKKFSELMLKEARVAVVPGSAFGKA-----------------GEGYVRISYA--TAYEKLEEAMDRMERV 381 (388)
T ss_dssp TCCHHHHHHHHHHHTCEECEEGGGGCGG-----------------GTTBEEEECC--SCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCEEEEechhhCCC-----------------CCCEEEEEec--CCHHHHHHHHHHHHHH
Confidence 23456666654 69999999988542 1379999997 4789999999999873
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Probab=99.88 E-value=5.8e-22 Score=250.97 Aligned_cols=281 Identities=18% Similarity=0.178 Sum_probs=208.5
Q ss_pred HHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCC-EEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCC
Q psy15216 44 EKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK-HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNG 122 (2602)
Q Consensus 44 ~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd-~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~ 122 (2602)
.++|+++|+++|+++++|++|+|+++++.++++++. +||| .|+++.|.|+.+...+... |.+++.++.++++
T Consensus 59 ~~Lr~~ia~~~gv~pe~I~it~Gs~eai~~~~~~~~----~pgd~~Vl~~~P~y~~~~~~~~~~---g~~v~~~~~~~~~ 131 (354)
T d1fg7a_ 59 KAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAFC----EPGKDAILYCPPTYGMYSVSAETI---GVECRTVPTLDNW 131 (354)
T ss_dssp HHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHC----CTTTCEEEECSSSCTHHHHHHHHH---TCEEEECCCCTTS
T ss_pred HHHHHHHHHHhCCChHHeeeccCchHHHHHHHHHhh----ccccccccccccccccchhhhhcc---Cceeecccccccc
Confidence 478999999999999999999999999999999998 8998 6889999999998888877 9999999988889
Q ss_pred ccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHH--HhcCCEEEEeccccccc----ccccCCCCCccEEEecc
Q psy15216 123 LITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELC--RSKGVIFHCDAAQAVGK----IDINIQNYKVDLMSFSA 196 (2602)
Q Consensus 123 ~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la--~~~g~~livD~a~a~g~----~~~dl~~~~~D~~~~S~ 196 (2602)
.+|+++++..+ ++++++++++||||||.+++.+++..++ .+++.++++|+++.... .+.........+++.|+
T Consensus 132 ~~d~~~l~~~~-~~~~~v~~~~pnNPtG~~~~~~~~~~~~~~~~~~~~~iidd~~~~f~~~~~~~~~~~~~~~~iv~~S~ 210 (354)
T d1fg7a_ 132 QLDLQGISDKL-DGVKVVYVCSPNNPTGQLINPQDFRTLLELTRGKAIVVADEAYIEFCPQASLAGWLAEYPHLAILRTL 210 (354)
T ss_dssp CCCHHHHHTSC-TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTTCEEEEECTTGGGSGGGCSGGGTTTCTTEEEEEES
T ss_pred ccchhhhhhcc-cccceeeccCCCccceeEeeecccccccccccccccccccccchhhccccccchhhcccccceEEeCC
Confidence 99999999887 5799999999999999999966654443 24677788887754221 11112233345778899
Q ss_pred ccccCCCC--cEEEEEecCCCCcccceecCCCccccccccCcchhHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHH
Q psy15216 197 HKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGL 273 (2602)
Q Consensus 197 ~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~-~~~~~~~~~~~~~~~l~~~l~~~L 273 (2602)
||.||++| +||+++++++++.+..... .+..+.+....+.+++. ..........+++.+.++++.+.+
T Consensus 211 SK~~~laGlRiGy~i~~~~~i~~l~~~~~---------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l 281 (354)
T d1fg7a_ 211 SKAFALAGLRCGFTLANEEVINLLMKVIA---------PYPLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAAL 281 (354)
T ss_dssp SSTTCCGGGCCEEEEECHHHHHHHHHHSC---------SSCSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCccccccccccchhhhhhhhhcC---------ccchhhHHHHHHHHHHhhhccccccccchhhhhHHHHHHHHH
Confidence 99999888 8999999887777654331 22333333333323332 122334566677788888899998
Q ss_pred hhccCceEEeCCCCCCCCceEEEEEcccChhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecC
Q psy15216 274 MESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIG 351 (2602)
Q Consensus 274 ~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~ 351 (2602)
.+ ++++....+... +++ ++...++.++.+.| +||.++++..+.. . ++++|||++
T Consensus 282 ~~-~~~~~~~~p~~~---~f~--~~~~~~~~~~~~~L~~~gIlvr~~~~~~~-------------~-----~~~lRisig 337 (354)
T d1fg7a_ 282 KE-IPCVEQVFDSET---NYI--LARFKASSAVFKSLWDQGIILRDQNKQPS-------------L-----SGCLRITVG 337 (354)
T ss_dssp HH-STTEEEECCCSS---SEE--EEEETTHHHHHHHHHHTTEECEECTTSTT-------------C-----TTEEEEECC
T ss_pred Hh-CCCcceeCCCCc---eEE--EEeCCCHHHHHHHHHHCCcEEecCCCCCC-------------C-----CCEEEEEeC
Confidence 87 677654433221 233 33334667777777 8999987765422 1 389999998
Q ss_pred CCCCHHHHHHHHHHHHh
Q psy15216 352 RFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 352 ~~~t~edid~li~~L~~ 368 (2602)
+++|+++++++||.
T Consensus 338 ---t~ee~~~~l~aLka 351 (354)
T d1fg7a_ 338 ---TREESQRVIDALRA 351 (354)
T ss_dssp ---CHHHHHHHHHHHHT
T ss_pred ---CHHHHHHHHHHHhh
Confidence 89999999999983
|
| >d1dkza2 b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: DnaK species: Escherichia coli [TaxId: 562]
Probab=99.88 E-value=9.8e-23 Score=206.47 Aligned_cols=117 Identities=49% Similarity=0.738 Sum_probs=113.4
Q ss_pred eeeeccccccceEEeeccEEEEEEecCCcCCCCcEEEEEeecccccceeEEEeecCcccccCCceeEEEEeeCCCCCCCC
Q psy15216 2404 FLLLDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAG 2483 (2602)
Q Consensus 2404 ~~~~d~~~~~~gi~~~~~~~~~ii~k~t~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~~~~~~~g 2483 (2602)
+++.|++|+|+||++.+|.|.++|+||++||+++++.|+|..|||+.+.|+|||||++.+++|.+||+|.|+++||.|+|
T Consensus 1 i~l~DV~p~slGIe~~~g~~~~iI~rnt~iP~~~t~~f~T~~dnQ~~i~i~v~qGe~~~~~~n~~lg~~~i~~ip~~p~G 80 (118)
T d1dkza2 1 VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVSIHVLQGERKRAADNKSLGQFNLDGINPAPRG 80 (118)
T ss_dssp CCCCCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCSCCTT
T ss_pred CEEEeecCCceeEEEcCCEEEEEEeccccCCCcceEEEEcccCCCceEEEEEeeeeeccccCceEEEEEEEcCCccCCCC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEEEEEcCCccEEEEEEeecCCcEEEEEEecCC
Q psy15216 2484 RARIKVTYQVDADGLLSIFAYEKISGKKKFITIKPFY 2520 (2602)
Q Consensus 2484 ~~~i~v~f~id~~g~l~V~a~~~~tg~~~~~~i~~~~ 2520 (2602)
.++|+|+|+||.||+|+|+|+|+.||++.+++|+...
T Consensus 81 ~~~I~Vtf~iD~nGiL~V~a~d~~tg~~~~~~i~~~~ 117 (118)
T d1dkza2 81 MPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASS 117 (118)
T ss_dssp CSCEEEEEEECTTCCEEEEEEETTTCCEEEEEECTTC
T ss_pred CcEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEcCC
Confidence 9999999999999999999999999999999998764
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.88 E-value=3.9e-22 Score=256.06 Aligned_cols=341 Identities=13% Similarity=0.108 Sum_probs=239.9
Q ss_pred HHHHHhcCCCccccceeeeeceeeeccCCCCCCCHHHHHHHHHHHhhc-cCCCCCccchhHHHHHHHHHHHHHHHHHHh-
Q psy15216 1373 KNSLEMTGFKAESSGIVMRPYTNIVFKDATTPIDPRVVDKMIPYLRVQ-FGNPASRNHIYGWTAEKAIEKARNEVAQLI- 1450 (2602)
Q Consensus 1373 ~~aL~~~g~~~~~~ei~~iP~~~v~L~~~~~~~~~~v~eal~~~l~~~-~~np~~~~~~~~~~~~~~~~~lr~~ia~~~- 1450 (2602)
++.|++.|.++.+..++ .|.. .+.++|+.+++++.+.++.. .+|+... ...++|+++++++
T Consensus 22 a~~l~~~G~~vi~l~~G-~P~~------~df~~p~~i~~a~~~a~~~~~~~Y~~~~----------G~~~LR~aia~~~~ 84 (395)
T d1xi9a_ 22 ARELEKKGIKVIRLNIG-DPVK------FDFQPPEHMKEAYCKAIKEGHNYYGDSE----------GLPELRKAIVEREK 84 (395)
T ss_dssp HHHHHHTTCCCEECCCC-CGGG------TTCCCCHHHHHHHHHHHHTTCCSCCCTT----------CCHHHHHHHHHHHH
T ss_pred HHHHHHCCCCeEECCCC-CCCC------CCCCCCHHHHHHHHHHHhcCCCCCCCCC----------CCHHHHHHHHHhhh
Confidence 46688888888777766 3422 13577889999999998763 2343331 1345566666654
Q ss_pred ---CC--CCCcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccC--CCCCcChh
Q psy15216 1451 ---YA--DPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK--NNGLITLS 1523 (2602)
Q Consensus 1451 ---g~--~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~--~~~~id~d 1523 (2602)
|. ++++|++|+|+++++.+++.++. ++||+|++++|.|+.+....+.+ |++++.++.. .++.+|++
T Consensus 85 ~~~g~~~~~~~i~i~~G~~~~~~~~~~~~~----~~Gd~vlv~~P~y~~~~~~~~~~---g~~~v~v~~~~~~~~~~d~~ 157 (395)
T d1xi9a_ 85 RKNGVDITPDDVRVTAAVTEALQLIFGALL----DPGDEILVPGPSYPPYTGLVKFY---GGKPVEYRTIEEEDWQPDID 157 (395)
T ss_dssp HHHCCCCCGGGEEEESHHHHHHHHHHHHHC----CTTCEEEEEESCCHHHHHHHHHT---TCEEEEEEEEGGGTSEECHH
T ss_pred hcccccccccccccccccchhhhhhhhhhc----CCCCEEEEcCCccccchhhhhhc---CCEEEEEeccccccccchHH
Confidence 54 77899999999999999999987 89999999999999988776666 9999888754 35679999
Q ss_pred HHHhhccCCceEEEEeccccccccccC---hHHHHHHhhhcCCEEEEecccccCcc------cccCCCCCccEEEEcccc
Q psy15216 1524 QLEEKICSDTILVSVMLVNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQAVGKI------DINIQNYKVDLMSFSAHK 1594 (2602)
Q Consensus 1524 ~l~~~i~~~t~lv~l~~~~n~tG~~~~---l~~I~~ia~~~gi~vivD~a~~~g~~------~~~l~~~~~D~~v~S~~K 1594 (2602)
++++++.++++++++++||||||.+++ +++|+++|++|+++++.|+++..... +..+.....-+++.|++|
T Consensus 158 ~~~~~~~~~~~~v~l~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~vi~~~S~SK 237 (395)
T d1xi9a_ 158 DIRKKITDRTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSK 237 (395)
T ss_dssp HHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSSSCEEEEEESTT
T ss_pred HHHHhhcccccEEEecCCCCCccchhhHHHHHHHHhhhhhcCeeEEeccccccccccccccchhhcCCCCCEEEEeCcch
Confidence 999999999999999999999999999 67888999999999999999754221 111222223477889999
Q ss_pred ccCCCc--eEEEEEecC--CCCccccccccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15216 1595 IYGPKG--IGALYIRRN--PRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLM 1670 (2602)
Q Consensus 1595 ~~gp~G--~G~l~~~~~--~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~ 1670 (2602)
.++++| +||+++... .+..+...... .... ...++...+.++..++.....++++.++.++++++.+.+.|.
T Consensus 238 ~~~~~GlRvG~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~ 313 (395)
T d1xi9a_ 238 VYFATGWRLGYMYFVDPENKLSEVREAIDR---LARI-RLCPNTPAQFAAIAGLTGPMDYLKEYMKKLKERRDYIYKRLN 313 (395)
T ss_dssp TTCCGGGCCEEEEEECTTCTTHHHHHHHHH---HHHH-TCCSCSHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccchhhcEeeEecCHHHHHHHHHHHHHH---hhcC-CCCcCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888778 899887532 22222211100 0011 123344445555456653345677888889999999999998
Q ss_pred hcCCcEEEeCCCCCCCCceEEEEEec---CCcHHHHHhc---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEE
Q psy15216 1671 ESIEEIYINGDMNNRIPHNLNISFNF---IEGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRF 1744 (2602)
Q Consensus 1671 ~~~~gl~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRl 1744 (2602)
+ .+++.+..|... ....+.++. .+..++...| +||.+.||..|+.. ..+++||
T Consensus 314 ~-~~~~~~~~p~gg---~~~~~~l~~~~~~~~~~~~~~ll~~~gV~v~PG~~Fg~~-----------------~~~~~Ri 372 (395)
T d1xi9a_ 314 E-IPGISTTKPQGA---FYIFPKIEVGPWKNDKEFVLDVLHNAHVLFVHGSGFGEY-----------------GAGHFRA 372 (395)
T ss_dssp T-STTEECCCCCBS---SEECCEECSCSCSSHHHHHHHHHHHHCEECEEGGGGCGG-----------------GTTBEEE
T ss_pred h-CCCceecCCCee---EEEeEECCCCCCCCHHHHHHHHHHhCCEEEEcChhhCCC-----------------CCCEEEE
Confidence 7 666666533221 112223332 2444555544 69999999988542 1379999
Q ss_pred ecCCCCCHHHHHHHHHHHHH
Q psy15216 1745 TIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1745 s~~~~~t~edid~li~~L~~ 1764 (2602)
+++ ++.++++.++++|++
T Consensus 373 s~~--~~~e~l~eal~rl~~ 390 (395)
T d1xi9a_ 373 VFL--PPIEILEEAMDRFEK 390 (395)
T ss_dssp ECC--SCHHHHHHHHHHHHH
T ss_pred Eec--CCHHHHHHHHHHHHH
Confidence 986 478999999998886
|
| >d1u00a2 b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: Chaperone protein hscA (Hsc66) species: Escherichia coli [TaxId: 562]
Probab=99.87 E-value=3.2e-22 Score=202.03 Aligned_cols=114 Identities=63% Similarity=0.992 Sum_probs=111.4
Q ss_pred eccccccceEEeeccEEEEEEecCCcCCCCcEEEEEeecccccceeEEEeecCcccccCCceeEEEEeeCCCCCCCCccE
Q psy15216 2407 LDVIPLSLGIETIGGLVEKIIFRNTTIPCSYSGEFTTFKDNQTAIAIKVVQGEDELVKNCQVLANFELRDIPPMPAGRAR 2486 (2602)
Q Consensus 2407 ~d~~~~~~gi~~~~~~~~~ii~k~t~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~~~~lg~~~l~~~~~~~~g~~~ 2486 (2602)
.||+|+|+||++.+|.|.++|+||++||+++++.|+|..|+|+.+.|+|||||+..+++|.+||+|.|+++||.|+|.++
T Consensus 1 lDV~p~slGIe~~gg~~~~iI~rnt~iP~~~t~~f~T~~d~Q~~v~i~V~qGe~~~~~~N~~lg~~~l~~ip~~p~G~~~ 80 (115)
T d1u00a2 1 MDVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDCRSLARFALRGIPALPAGGAH 80 (115)
T ss_dssp CCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEECSSTTCCCEEEEEEECSSSBGGGSEEEEEEEECCCCCCSTTCSC
T ss_pred CCccCcceeEEEcCCEEEEEEcCCCCCCceeeeeEEcCCCCceEEEEEEhhccCcccccceEeeEEEEeCcccCcccccc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEcCCccEEEEEEeecCCcEEEEEEecCC
Q psy15216 2487 IKVTYQVDADGLLSIFAYEKISGKKKFITIKPFY 2520 (2602)
Q Consensus 2487 i~v~f~id~~g~l~V~a~~~~tg~~~~~~i~~~~ 2520 (2602)
|+|+|+||.||+|+|+|+|+.||++.+++|+.++
T Consensus 81 I~Vtf~id~nGiL~V~A~d~~tg~~~~i~i~~~~ 114 (115)
T d1u00a2 81 IRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSY 114 (115)
T ss_dssp EEEEEEECTTCCEEEEEEETTTCCEEEEEECCCS
T ss_pred EEEEEEccCCceEEEEEEECCCCCEeEEEEeCCC
Confidence 9999999999999999999999999999998874
|
| >d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: L-threonine-O-3-phosphate decarboxylase CobD species: Salmonella enterica [TaxId: 28901]
Probab=99.87 E-value=4.2e-21 Score=243.34 Aligned_cols=306 Identities=15% Similarity=0.111 Sum_probs=219.8
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCC
Q psy15216 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK 87 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd 87 (2602)
++|+.+++++.+.+.....||+.+ ..++|+++|+++|+++++|++++|+++++.+++..+. ++
T Consensus 35 ~~p~~~~~a~~~~~~~~~~Yp~~~-----------~~~Lr~aia~~~~v~~~~I~~~~g~~~~~~~~~~~~~------~~ 97 (355)
T d1lc5a_ 35 GMPVSVKRALIDNLDCIERYPDAD-----------YFHLHQALARHHQVPASWILAGNGETESIFTVASGLK------PR 97 (355)
T ss_dssp CCCHHHHHHHHHTGGGGGSCCCTT-----------CHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHHC------CS
T ss_pred CCCHHHHHHHHHHHHHhccCCCCC-----------hHHHHHHHHHHhCCCHHHEEecccHHHHHHHHHhhhc------cc
Confidence 678889999999877665566541 2468999999999999999999999999988877654 44
Q ss_pred EEEEcCCCCcccHHHHHHHHhCCcEEEEeccCC-CCccChHHHHhhccCCceEEEEecccCccccccc---HHHHHHHHH
Q psy15216 88 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIGELCR 163 (2602)
Q Consensus 88 ~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~-~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~---l~~I~~la~ 163 (2602)
.+++..|.|+.+....... ++.++.++++. ++....+.+.+.+.++++++++++||||||.+++ +.+|+++|+
T Consensus 98 ~~~v~~p~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~l~nP~NPtG~~~~~e~l~~i~~~a~ 174 (355)
T d1lc5a_ 98 RAMIVTPGFAEYGRALAQS---GCEIRRWSLREADGWQLTDAILEALTPDLDCLFLCTPNNPTGLLPERPLLQAIADRCK 174 (355)
T ss_dssp EEEEEESCCTHHHHHHHHT---TCEEEEEECCGGGTTCCCTTHHHHCCTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHH
T ss_pred cccccCCccceeccccccc---cccceeeeeeccCCccceeeeeeccccccceeeeecccCcccccchhhhhhhhhhhcc
Confidence 5555667787776555444 78888888754 3333346677888999999999999999999999 556778888
Q ss_pred hcCCEEEEecccccccc----cc-cCCCCCccEEEeccccccCCCC--cEEEEEecCCC-CcccceecCCCccccccccC
Q psy15216 164 SKGVIFHCDAAQAVGKI----DI-NIQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPR-TRIEAQIHGGGHEYGLRSGT 235 (2602)
Q Consensus 164 ~~g~~livD~a~a~g~~----~~-dl~~~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~-~~l~~~~~g~~~~~~~~~gt 235 (2602)
+|++++++|+++..... .. .....+..+++.|++|.+|++| +||++++++.+ +.+.... .+++
T Consensus 175 ~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~GlR~G~~i~~~~~~~~~~~~~~---------~~~~ 245 (355)
T d1lc5a_ 175 SLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSDDAAMARMRRQQ---------MPWS 245 (355)
T ss_dssp HHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTTTCTTTCCEEEECCCHHHHHHHHHHS---------CTTC
T ss_pred ccccccccccceeeeeeecccccccccccccceeecccccccccccccccceeccchhhhHHHHhhc---------CCcc
Confidence 99999999999863211 11 1122334588889999999888 89999886533 2232211 1234
Q ss_pred cchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcccChhHHHHHh--CCe
Q psy15216 236 LATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDI 313 (2602)
Q Consensus 236 ~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI 313 (2602)
.+..+..++.++++. ..++.+.++++++.++++.+.|.+ ++++.+.+... ..+++.++. +..++.+.| +||
T Consensus 246 ~~~~~~~~a~~~l~~-~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~p~~~----~f~~~~~~~-~~~~~~~~L~~~gv 318 (355)
T d1lc5a_ 246 VNALAALAGEVALQD-SAWQQATWHWLREEGARFYQALCQ-LPLLTVYPGRA----NYLLLRCER-EDIDLQRRLLTQRI 318 (355)
T ss_dssp SCHHHHHHHHHGGGC-HHHHHHHHHHHHHHHHHHHHHHHT-STTEEECCCSS----SEEEEEESC-TTCCHHHHHHTTTE
T ss_pred ccccccccccccccc-cchhHHHHHHHHHHHHHHHHHHhh-cCCcEECCCCC----EEEEEECCC-CHHHHHHHHHHCCc
Confidence 555555555566652 234667777888888899999987 77888753321 233444443 445666666 799
Q ss_pred EEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 314 AVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 314 ~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
.++++..|... ..+++|||++ +++|+++++++|++.
T Consensus 319 ~vr~~~~f~~~-----------------~~~~iRis~~---~~~e~~~li~aL~~i 354 (355)
T d1lc5a_ 319 LIRSCANYPGL-----------------DSRYYRVAIR---SAAQNERLLAALRNV 354 (355)
T ss_dssp ECEECTTSTTC-----------------CTTEEEEECC---CHHHHHHHHHHHHHH
T ss_pred EEEeCccCCCC-----------------CCCEEEEEeC---CHHHHHHHHHHHHHh
Confidence 99988766431 1389999998 899999999999964
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.87 E-value=2.1e-21 Score=251.34 Aligned_cols=318 Identities=13% Similarity=0.049 Sum_probs=221.7
Q ss_pred CCCHHHHHHHHHHHhhh--cCCCCCCCcchhhhHHHHHHHHHHHHHHHh------------CCCCCcEEEeCCHHHHHHH
Q psy15216 8 PIDPRVVDKMIPYLRVQ--FGNPASRNHIYGWTAEKAIEKARNEVAQLI------------YADPREIIWTSGATESNNL 73 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~--~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~------------g~~~~~Iv~t~g~T~al~~ 73 (2602)
++++.+++++.+.+... .+|+.. . ...++|+++|+++ ++++++|++|+|+++|+..
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~Y~~~------~----G~~~LReaia~~~~~~~~~~~~~~~~~~~~~I~it~G~~~al~~ 116 (412)
T d1bw0a_ 47 LTSAAQIKKLKEAIDSQECNGYFPT------V----GSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILM 116 (412)
T ss_dssp CCCHHHHHHHHHHHHTTCSSSCCCT------T----CCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEESHHHHHHHH
T ss_pred cccHHHHHHHHHHhhCCCCCCCCCC------c----CCHHHHHHHHHHHHHhcCcccccCCCCCCCeEEEecccccchhh
Confidence 45677888888776542 223221 1 1344555555554 2467899999999999999
Q ss_pred HHHhcccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCC--CCccChHHHHhhccCCceEEEEecccCcccc
Q psy15216 74 AIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGV 151 (2602)
Q Consensus 74 ~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~ld~e~l~~~i~~~tklv~i~~~~npTG~ 151 (2602)
++.++. ++||.|++++|.|+.+...++.. |++++.+++++ ++.++++++++.+.++++++++++||||||.
T Consensus 117 ~~~~l~----~~Gd~Vlv~~P~y~~~~~~~~~~---G~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~l~np~NPtG~ 189 (412)
T d1bw0a_ 117 AITAIC----DAGDYALVPQPGFPHYETVCKAY---GIGMHFYNCRPENDWEADLDEIRRLKDDKTKLLIVTNPSNPCGS 189 (412)
T ss_dssp HHHHHC----CTTCEEEEEESCCTHHHHHHHHT---TCEEEEEEEEGGGTTEECHHHHHHHCCTTEEEEEEESSCTTTCC
T ss_pred hhhhhh----ccccceeeeeccchhhhhhhhcc---CccccccccccccccchhhHHHHhhhhccccccccccccccccc
Confidence 999998 89999999999999988777665 99999998764 4578999999999999999999999999999
Q ss_pred ccc---HHHHHHHHHhcCCEEEEeccccccc----ccc-------cCCCCCccEEEeccccccCCCC--cEEEEEecCCC
Q psy15216 152 IQP---ILEIGELCRSKGVIFHCDAAQAVGK----IDI-------NIQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPR 215 (2602)
Q Consensus 152 ~~~---l~~I~~la~~~g~~livD~a~a~g~----~~~-------dl~~~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~ 215 (2602)
+++ +++|+++|++|+++||+|++|+.-. .+. ++.....-+++.|++|.+|.+| +||+++++...
T Consensus 190 ~~~~~~~~~i~~~~~~~~~~vi~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~~~~~G~RvG~~~~~~~~~ 269 (412)
T d1bw0a_ 190 NFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNLVVPGWRLGWLLYVDPHG 269 (412)
T ss_dssp CCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTTSCGGGCCEEEEEECTTC
T ss_pred cchhhhccccccccccCCeeeechhhHHHhccCCCCCccccccccccccccccccccccCccCccCCCCcccccccchhh
Confidence 998 5567788889999999999986321 111 1111123467779999888888 89999987765
Q ss_pred CcccceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEE
Q psy15216 216 TRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLN 295 (2602)
Q Consensus 216 ~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~ 295 (2602)
.......... .......++.+..+..+...+.....++..+.++++.+.++++.+.|.+ .+|+....|... ..++
T Consensus 270 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~-~~g~~~~~p~gg---~~l~ 344 (412)
T d1bw0a_ 270 NGPSFLEGLK-RVGMLVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGE-CIGLAPTMPRGA---MYLM 344 (412)
T ss_dssp SCHHHHHHHH-HHHHHHTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHTT-STTEEECCCCBT---TEEE
T ss_pred cchhhhhhhc-cccccccCCchhhhhhcccccccccccccccccchhHHHHHHHHHHHHH-hcCceecCCCCc---eEEE
Confidence 4321110000 0001111222222222222222223456788889999999999999977 678887654332 2334
Q ss_pred EEEcc------cChhHHHHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHH
Q psy15216 296 ISFNF------IEGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLL 366 (2602)
Q Consensus 296 ~~~~~------~~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L 366 (2602)
+.++. .+..++...| .||.+.||..|..+ +++|||++ .++++++..+++|
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~Fg~~-------------------g~iRis~~--~~~e~l~eal~Rl 403 (412)
T d1bw0a_ 345 SRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFHAP-------------------GFTRLTTT--RPVEVYREAVERI 403 (412)
T ss_dssp EEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGTCT-------------------TEEEEECC--SCHHHHHHHHHHH
T ss_pred EeCChhhcCCCCCHHHHHHHHHHhCCEEEEeccccCCC-------------------CeEEEEEc--CCHHHHHHHHHHH
Confidence 44542 2345666665 59999999877543 89999997 4788898888888
Q ss_pred Hh
Q psy15216 367 KM 368 (2602)
Q Consensus 367 ~~ 368 (2602)
++
T Consensus 404 ~~ 405 (412)
T d1bw0a_ 404 KA 405 (412)
T ss_dssp HH
T ss_pred HH
Confidence 75
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Probab=99.87 E-value=7.9e-21 Score=241.43 Aligned_cols=320 Identities=10% Similarity=0.082 Sum_probs=223.5
Q ss_pred CCCHHHHHHHHHHHhh-hcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCC--CCCcEEEeCCHHHHHHHHHHhccccccc
Q psy15216 8 PIDPRVVDKMIPYLRV-QFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA--DPREIIWTSGATESNNLAIKGAAHFYKK 84 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~-~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~--~~~~Iv~t~g~T~al~~~~~~l~~~~~~ 84 (2602)
|+|+.+.+++.+++.. .++|+.. .. .++.+.+.+++++.+|. ++++|++|+|+++++..++.++. +
T Consensus 12 ~~p~~i~eal~~~~~~~~~~Y~~~------~g-~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~~l~~~~~~l~----~ 80 (361)
T d1d2fa_ 12 ATAPCIIEALNQRLMHGVFGYSRW------KN-DEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWS----E 80 (361)
T ss_dssp CCCHHHHHHHHHHHTTCCCCCCCS------CC-HHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHSS----C
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCC------CC-HHHHHHHHHHHHHHhCCCCCcceEEEeCCHHHHHHHHhhhcc----c
Confidence 7889999999998864 2233322 11 23455566666666675 67899999999999999999998 8
Q ss_pred CCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccC---CCCccChHHHHhhcc-CCceEEEEecccCccccccc---HHH
Q psy15216 85 RGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK---NNGLITLSQLEEKIC-SDTILVSVMLVNNEIGVIQP---ILE 157 (2602)
Q Consensus 85 ~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~---~~~~ld~e~l~~~i~-~~tklv~i~~~~npTG~~~~---l~~ 157 (2602)
|||+|++++|.|+++...+... |..++.++.+ +++.+|++.+++.+. ++++++++++|+||||.+++ +++
T Consensus 81 ~gd~Vlv~~P~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~~d~~~~~~~~~~~~~~~i~l~~p~NPTG~~~s~~~~~~ 157 (361)
T d1d2fa_ 81 TGEGVVIHTPAYDAFYKAIEGN---QRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDELEI 157 (361)
T ss_dssp TTCEEEEEESCCHHHHHHHHHT---TCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEESSCTTTCCCCCTTHHHH
T ss_pred cccccccccccccchhHHHHhh---cceEEeecccccccccccccccchhhcccCCceeEEecccccccccccchhhhhh
Confidence 9999999999999987777665 8888877754 234689999999885 68999999999999999998 668
Q ss_pred HHHHHHhcCCEEEEeccccccc----ccccCC--CCCccEEEeccccccCCCC--cEEEEEecCCC-CcccceecCCCcc
Q psy15216 158 IGELCRSKGVIFHCDAAQAVGK----IDINIQ--NYKVDLMSFSAHKIYGPKG--IGALYIRRNPR-TRIEAQIHGGGHE 228 (2602)
Q Consensus 158 I~~la~~~g~~livD~a~a~g~----~~~dl~--~~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~-~~l~~~~~g~~~~ 228 (2602)
|+++|+++|+++|+|++|+... .+..+. ..+..+++.|++|.++.+| +||+++..... ........
T Consensus 158 i~~~~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~v~~~s~SK~~~~~g~R~g~~~~~~~~~~~~~~~~~~----- 232 (361)
T d1d2fa_ 158 MADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVARGDWALLTSGSKSFNIPALTGAYGIIENSSSRDAYLSALK----- 232 (361)
T ss_dssp HHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCCSSEEEEECSHHHHTCGGGCCEEEEECSHHHHHHHHHHHH-----
T ss_pred hhhhhhhhheeeeecccccccccccccccccccccccccccccccccccccccccceeeecchhHHHHHHhhhcc-----
Confidence 8999999999999999986422 111111 1223477789999777665 78888764321 11111110
Q ss_pred ccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEc--ccChhHH
Q psy15216 229 YGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN--FIEGESL 306 (2602)
Q Consensus 229 ~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~--~~~~~~~ 306 (2602)
.....++++...+.+...++.....+.++.+..+.++++.+.+.+.+..+++.+..|.. ....++.++ ..+..++
T Consensus 233 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~g---g~~~~~~l~~~~~~~~~~ 309 (361)
T d1d2fa_ 233 GRDGLSSPSVLALTAHIAAYQQGAPWLDALRIYLKDNLTYIADKMNAAFPELNWQIPQS---TYLAWLDLRPLNIDDNAL 309 (361)
T ss_dssp TTSCCCSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCCCCSB---CSEEEEECGGGCCCHHHH
T ss_pred cccccccchhhhHHHHHHHhhccchhhhcccccchhhHHHHHHHhhhhcccccccccCc---eeEEEEEccCCCCCHHHH
Confidence 11112345555555444455544455677777778888888887776566666554432 223334443 3467777
Q ss_pred HHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 307 LMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 307 ~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
..+| +||.+.+|..|... ..+++|||++ .+++++++.+++|++
T Consensus 310 ~~~Ll~~~gv~v~pG~~F~~~-----------------~~~~vRis~~--~~~e~l~~al~rl~~ 355 (361)
T d1d2fa_ 310 QKALIEQEKVAIMPGYTYGEE-----------------GRGFVRLNAG--CPRSKLEKGVAGLIN 355 (361)
T ss_dssp HHHHHHTTCEECEEGGGGCGG-----------------GTTEEEEECC--SCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCEEEEeccccCCC-----------------CCCEEEEEEc--CCHHHHHHHHHHHHH
Confidence 7776 59999999877532 2379999987 478888888888875
|
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Probab=99.86 E-value=2.6e-20 Score=239.76 Aligned_cols=339 Identities=14% Similarity=-0.001 Sum_probs=246.6
Q ss_pred CCCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCC-----cEEEeCCHHHHHHHHHHhccc
Q psy15216 6 TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPR-----EIIWTSGATESNNLAIKGAAH 80 (2602)
Q Consensus 6 ~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~-----~Iv~t~g~T~al~~~~~~l~~ 80 (2602)
+|.+++.+.+.+.+++.....+.+ ..+...++..++.+++++++|++.. .-++|+|+|+|+.+++.+...
T Consensus 63 ~t~~~~~~~~l~~~~~~~N~~~~~-----~~P~~~~lE~~~v~~la~L~~~p~~~~~~~~G~~t~GgSeA~~~a~~aar~ 137 (450)
T d1pmma_ 63 QTWDDENVHKLMDLSINKNWIDKE-----EYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKW 137 (450)
T ss_dssp CCCCCHHHHHHHHHTTTCBTTCTT-----TSHHHHHHHHHHHHHHHHHTTCCCCTTSCCSEEEESSHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHhcCCCCcc-----cCccHHHHHHHHHHHHHHHhCCCccccCCCcCeeeCchHHHHHHHHHHHHH
Confidence 457788888888887765333322 2344567888899999999998432 269999999999999988753
Q ss_pred cc--------ccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCC-CCccChHHHHhhccCCceEEEEecccCcccc
Q psy15216 81 FY--------KKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NGLITLSQLEEKICSDTILVSVMLVNNEIGV 151 (2602)
Q Consensus 81 ~~--------~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~-~~~ld~e~l~~~i~~~tklv~i~~~~npTG~ 151 (2602)
.. ......++++...|.++..+++.+ |++++.+++++ ++.+|+++|+++++++|.+|+.++++|.||.
T Consensus 138 ~~~~~~~~~g~~~~~~~~~~~~~H~s~~Kaa~~~---gi~~~~v~~~~~~~~~d~~~L~~~i~~~t~~Vv~t~gtt~tG~ 214 (450)
T d1pmma_ 138 RWRKRMEAAGKPTDKPNLVCGPVQICWHKFARYW---DVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGN 214 (450)
T ss_dssp HHHHHHHHHTCCCSCCEEEESSCCHHHHHHHHHT---TCEEEECCCBTTBCSCCHHHHHHHCCTTEEEEECBBSCTTTCB
T ss_pred HHHHHhhhcCCCCCCceEEecccHHHHHHHHHHc---CCCceEeeecCCCCcCcHHHHHHHhhhCceEEEeeeeeccCCC
Confidence 21 012235777888899988888777 99999999886 5899999999999999999999999999999
Q ss_pred cccHHHHHHHH------HhcCCEEEEecccccccccccCCC-------CCccEEEeccccc-cCCCCcEEEEEecCCC-C
Q psy15216 152 IQPILEIGELC------RSKGVIFHCDAAQAVGKIDINIQN-------YKVDLMSFSAHKI-YGPKGIGALYIRRNPR-T 216 (2602)
Q Consensus 152 ~~~l~~I~~la------~~~g~~livD~a~a~g~~~~dl~~-------~~~D~~~~S~~K~-~Gp~G~G~l~~~~~~~-~ 216 (2602)
+.|+++|.++| +++|+|+|||+|++.+..+++... .++|++.+|+||+ ++|.|+|+++++++.. .
T Consensus 215 ~dpv~~i~~i~~~~~~a~~~~i~lHVDAA~gG~~~p~~~~~~~~~~~~~~aDSi~~s~HK~~~~p~g~g~l~~r~~~~~~ 294 (450)
T d1pmma_ 215 YEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALP 294 (450)
T ss_dssp BCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSSCEEEEESSGGGSC
T ss_pred ccccchhhHHHHHHHHHhccCcEEEeehhhccceeeeechhhhhhhcccceeEeecChhhccCCCCCeeEEEecChhhhh
Confidence 99999888775 568999999999987766543322 3589999999995 5799999999986532 1
Q ss_pred c---ccceecCCCccccccccCcchhHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCC-CC
Q psy15216 217 R---IEAQIHGGGHEYGLRSGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNR-IP 291 (2602)
Q Consensus 217 ~---l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~-~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~-~~ 291 (2602)
. +.+.+.++........++.+...+.++.+++. +...++.++.++..++++++.++|.+ .++++++.+.... .-
T Consensus 295 ~~~~~~~~yl~~~~~~~~~~~sr~~~~~~~~~~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~-~~~~el~~~~~p~~~l 373 (450)
T d1pmma_ 295 QELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAK-LGPYEFICTGRPDEGI 373 (450)
T ss_dssp GGGCEEEEETTEEEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSCEEEEEECCTTTBS
T ss_pred hhcccccCcCCCCcCCCcccCccchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEeCCCCCCce
Confidence 1 12233333333333445666666666666666 56678999999999999999999988 7889887543221 11
Q ss_pred ceEEEEEcc-----cChhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHH
Q psy15216 292 HNLNISFNF-----IEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIK 364 (2602)
Q Consensus 292 ~~~~~~~~~-----~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~ 364 (2602)
..+.|.+.. .+..++...| +|+.+..... ++ +. .....+|+++...+|.+++++|++
T Consensus 374 ~~V~Fr~~~~~~~~~~~~~l~~~L~~~Gw~v~~~~~--p~-----------~~---~~~~~lRvvv~~~~t~e~~d~lv~ 437 (450)
T d1pmma_ 374 PAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTL--GG-----------EA---TDIVVMRIMCRRGFEMDFAELLLE 437 (450)
T ss_dssp SEEEEEECTTCCCSSCHHHHHHHHHTTTCBCCEEEC--CT-----------TC---TTCEEEEEECCTTCCHHHHHHHHH
T ss_pred EEEEEecCCcccCCCCHHHHHHHHHHcCCeeeccCc--CC-----------Cc---CCcEEEEEEccCCCCHHHHHHHHH
Confidence 234555532 3344666666 6766542211 11 00 012579999999999999999999
Q ss_pred HHHhh
Q psy15216 365 LLKMK 369 (2602)
Q Consensus 365 ~L~~~ 369 (2602)
.|++.
T Consensus 438 dl~~~ 442 (450)
T d1pmma_ 438 DYKAS 442 (450)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99863
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.86 E-value=3.3e-21 Score=247.32 Aligned_cols=321 Identities=12% Similarity=0.075 Sum_probs=225.6
Q ss_pred CCCHHHHHHHHHHHhhhc-CCCCCCCcchhhhHHHHHHHHHHHHHHHhCC--CCCcEEEeCCHHHHHHHHHHhccccccc
Q psy15216 8 PIDPRVVDKMIPYLRVQF-GNPASRNHIYGWTAEKAIEKARNEVAQLIYA--DPREIIWTSGATESNNLAIKGAAHFYKK 84 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~-~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~--~~~~Iv~t~g~T~al~~~~~~l~~~~~~ 84 (2602)
++|+.+.+++.+++.... .|+.. ....++.+.+.+++.+.+|. ++++|++++|+++++.+++.++. .
T Consensus 46 ~~p~~i~~a~~~a~~~~~~~Y~~~------~G~~~LR~aia~~~~~~~g~~~~~~~i~i~~G~~~~~~~~~~~~~----~ 115 (395)
T d1xi9a_ 46 QPPEHMKEAYCKAIKEGHNYYGDS------EGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEALQLIFGALL----D 115 (395)
T ss_dssp CCCHHHHHHHHHHHHTTCCSCCCT------TCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHC----C
T ss_pred CCCHHHHHHHHHHHhcCCCCCCCC------CCCHHHHHHHHHhhhhcccccccccccccccccchhhhhhhhhhc----C
Confidence 678899999999986532 23332 11223444444445555565 67899999999999999999998 8
Q ss_pred CCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccC--CCCccChHHHHhhccCCceEEEEecccCccccccc---HHHHH
Q psy15216 85 RGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK--NNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIG 159 (2602)
Q Consensus 85 ~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~--~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~---l~~I~ 159 (2602)
+||.|++++|.|+.+...+..+ |++++.++.. .++.+|++++++.+.++++++++++||||||.+++ +++|+
T Consensus 116 ~Gd~vlv~~P~y~~~~~~~~~~---g~~~v~v~~~~~~~~~~d~~~~~~~~~~~~~~v~l~~P~NPTG~~~s~~~~~~l~ 192 (395)
T d1xi9a_ 116 PGDEILVPGPSYPPYTGLVKFY---GGKPVEYRTIEEEDWQPDIDDIRKKITDRTKAIAVINPNNPTGALYDKKTLEEIL 192 (395)
T ss_dssp TTCEEEEEESCCHHHHHHHHHT---TCEEEEEEEEGGGTSEECHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred CCCEEEEcCCccccchhhhhhc---CCEEEEEeccccccccchHHHHHHhhcccccEEEecCCCCCccchhhHHHHHHHH
Confidence 9999999999999987777666 9999888754 35679999999999999999999999999999999 55678
Q ss_pred HHHHhcCCEEEEecccccccc------cccCCCCCccEEEeccccccCCCC--cEEEEEecC--CCCcccceecCCCccc
Q psy15216 160 ELCRSKGVIFHCDAAQAVGKI------DINIQNYKVDLMSFSAHKIYGPKG--IGALYIRRN--PRTRIEAQIHGGGHEY 229 (2602)
Q Consensus 160 ~la~~~g~~livD~a~a~g~~------~~dl~~~~~D~~~~S~~K~~Gp~G--~G~l~~~~~--~~~~l~~~~~g~~~~~ 229 (2602)
++|++|+++++.|+++..... +..+.....-+++.|+||.|+++| +||+++... ....+...... .
T Consensus 193 ~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRvG~~~~~~~~~~~~~~~~~~~~----~ 268 (395)
T d1xi9a_ 193 NIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVYFATGWRLGYMYFVDPENKLSEVREAIDR----L 268 (395)
T ss_dssp HHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSSSCEEEEEESTTTTCCGGGCCEEEEEECTTCTTHHHHHHHHH----H
T ss_pred hhhhhcCeeEEeccccccccccccccchhhcCCCCCEEEEeCcchhcccchhhcEeeEecCHHHHHHHHHHHHHH----h
Confidence 889999999999999864221 111222223477889999988888 899887532 22222211100 0
Q ss_pred cccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc---cChhHH
Q psy15216 230 GLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF---IEGESL 306 (2602)
Q Consensus 230 ~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~---~~~~~~ 306 (2602)
......++..+..++..++.....++++.+++++++++.+.+.|.+ .+++.+..|... ..+++.++. .+..++
T Consensus 269 ~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~p~gg---~~~~~~l~~~~~~~~~~~ 344 (395)
T d1xi9a_ 269 ARIRLCPNTPAQFAAIAGLTGPMDYLKEYMKKLKERRDYIYKRLNE-IPGISTTKPQGA---FYIFPKIEVGPWKNDKEF 344 (395)
T ss_dssp HHHTCCSCSHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHT-STTEECCCCCBS---SEECCEECSCSCSSHHHH
T ss_pred hcCCCCcCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHh-CCCceecCCCee---EEEeEECCCCCCCCHHHH
Confidence 0012234444555555555533456788888899999999999987 666665544322 233344542 245556
Q ss_pred HHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 307 LMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 307 ~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
...+ +||.+.||..|... ..+++||+++ ++.++++..+++|++
T Consensus 345 ~~~ll~~~gV~v~PG~~Fg~~-----------------~~~~~Ris~~--~~~e~l~eal~rl~~ 390 (395)
T d1xi9a_ 345 VLDVLHNAHVLFVHGSGFGEY-----------------GAGHFRAVFL--PPIEILEEAMDRFEK 390 (395)
T ss_dssp HHHHHHHHCEECEEGGGGCGG-----------------GTTBEEEECC--SCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCEEEEcChhhCCC-----------------CCCEEEEEec--CCHHHHHHHHHHHHH
Confidence 5554 59999999887542 1389999986 478889988888885
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.86 E-value=9e-21 Score=245.29 Aligned_cols=318 Identities=14% Similarity=0.055 Sum_probs=223.6
Q ss_pred CCCHHHHHHHHHHHhhc--cCCCCCccchhHHHHHHHHHHHHHHHHHHh------------CCCCCcEEEeCCHHHHHHH
Q psy15216 1404 PIDPRVVDKMIPYLRVQ--FGNPASRNHIYGWTAEKAIEKARNEVAQLI------------YADPREIIWTSGATESNNL 1469 (2602)
Q Consensus 1404 ~~~~~v~eal~~~l~~~--~~np~~~~~~~~~~~~~~~~~lr~~ia~~~------------g~~~~~iv~t~gaT~al~~ 1469 (2602)
..++.+++++.+.++.. .+|+.. ....++|+++++++ +.++++|++|+|+++|+..
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~Y~~~----------~G~~~LReaia~~~~~~~~~~~~~~~~~~~~~I~it~G~~~al~~ 116 (412)
T d1bw0a_ 47 LTSAAQIKKLKEAIDSQECNGYFPT----------VGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILM 116 (412)
T ss_dssp CCCHHHHHHHHHHHHTTCSSSCCCT----------TCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEESHHHHHHHH
T ss_pred cccHHHHHHHHHHhhCCCCCCCCCC----------cCCHHHHHHHHHHHHHhcCcccccCCCCCCCeEEEecccccchhh
Confidence 34567888888877642 233322 11346677777765 2477899999999999999
Q ss_pred HHHhhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCC--CCCcChhHHHhhccCCceEEEEecccccccc
Q psy15216 1470 AIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGV 1547 (2602)
Q Consensus 1470 al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~ 1547 (2602)
++.++. ++||+|++++|.|+.+...++.+ |++++.++.++ ++.+++++++++++++++++++++|+||||.
T Consensus 117 ~~~~l~----~~Gd~Vlv~~P~y~~~~~~~~~~---G~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~l~np~NPtG~ 189 (412)
T d1bw0a_ 117 AITAIC----DAGDYALVPQPGFPHYETVCKAY---GIGMHFYNCRPENDWEADLDEIRRLKDDKTKLLIVTNPSNPCGS 189 (412)
T ss_dssp HHHHHC----CTTCEEEEEESCCTHHHHHHHHT---TCEEEEEEEEGGGTTEECHHHHHHHCCTTEEEEEEESSCTTTCC
T ss_pred hhhhhh----ccccceeeeeccchhhhhhhhcc---CccccccccccccccchhhHHHHhhhhccccccccccccccccc
Confidence 999987 89999999999999988777665 99999999764 4568999999999999999999999999999
Q ss_pred ccC---hHHHHHHhhhcCCEEEEecccccC----cccc-------cCCCCCccEEEEccccccCCCc--eEEEEEecCCC
Q psy15216 1548 IQP---ILEIGELCRSKGVIFHCDAAQAVG----KIDI-------NIQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPR 1611 (2602)
Q Consensus 1548 ~~~---l~~I~~ia~~~gi~vivD~a~~~g----~~~~-------~l~~~~~D~~v~S~~K~~gp~G--~G~l~~~~~~~ 1611 (2602)
+++ +++|+++|++|++++|+|++|+.- ..+. +......-+++.|++|.++++| +||+++++...
T Consensus 190 ~~~~~~~~~i~~~~~~~~~~vi~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~~~~~G~RvG~~~~~~~~~ 269 (412)
T d1bw0a_ 190 NFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNLVVPGWRLGWLLYVDPHG 269 (412)
T ss_dssp CCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTTSCGGGCCEEEEEECTTC
T ss_pred cchhhhccccccccccCCeeeechhhHHHhccCCCCCccccccccccccccccccccccCccCccCCCCcccccccchhh
Confidence 998 678888889999999999998531 1111 1111123466779999887777 89999997765
Q ss_pred CccccccccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEE
Q psy15216 1612 TRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLN 1691 (2602)
Q Consensus 1612 ~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~ 1691 (2602)
........ .........++....+..+...+.......+.+.++++.+.++++.+.|.+ .+|+.+..+... ....
T Consensus 270 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~-~~g~~~~~p~gg---~~l~ 344 (412)
T d1bw0a_ 270 NGPSFLEG-LKRVGMLVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGE-CIGLAPTMPRGA---MYLM 344 (412)
T ss_dssp SCHHHHHH-HHHHHHHHTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHTT-STTEEECCCCBT---TEEE
T ss_pred cchhhhhh-hccccccccCCchhhhhhcccccccccccccccccchhHHHHHHHHHHHHH-hcCceecCCCCc---eEEE
Confidence 43211100 000001112223333332222222233456788889999999999999987 678887644322 1122
Q ss_pred EEEec------CCcHHHHHhc---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHH
Q psy15216 1692 ISFNF------IEGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLL 1762 (2602)
Q Consensus 1692 ~~~~~------~~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L 1762 (2602)
..++. .+..++...| +||.+.||..|+.+ +++|||+. .+.+++++++++|
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~Fg~~-------------------g~iRis~~--~~~e~l~eal~Rl 403 (412)
T d1bw0a_ 345 SRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFHAP-------------------GFTRLTTT--RPVEVYREAVERI 403 (412)
T ss_dssp EEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGTCT-------------------TEEEEECC--SCHHHHHHHHHHH
T ss_pred EeCChhhcCCCCCHHHHHHHHHHhCCEEEEeccccCCC-------------------CeEEEEEc--CCHHHHHHHHHHH
Confidence 33331 1345666655 59999999988643 89999986 4789999999999
Q ss_pred HH
Q psy15216 1763 KM 1764 (2602)
Q Consensus 1763 ~~ 1764 (2602)
++
T Consensus 404 ~~ 405 (412)
T d1bw0a_ 404 KA 405 (412)
T ss_dssp HH
T ss_pred HH
Confidence 86
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Probab=99.86 E-value=1.8e-21 Score=248.74 Aligned_cols=333 Identities=15% Similarity=0.138 Sum_probs=235.2
Q ss_pred cHHHHHHHHHhcCCCccccceeeeeceeeeccCCCCCCCHHHHHHHHHHHhhc-cCCCCCccchhHHHHHHHHHHHHHHH
Q psy15216 1368 KFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDATTPIDPRVVDKMIPYLRVQ-FGNPASRNHIYGWTAEKAIEKARNEV 1446 (2602)
Q Consensus 1368 ~~~~v~~aL~~~g~~~~~~ei~~iP~~~v~L~~~~~~~~~~v~eal~~~l~~~-~~np~~~~~~~~~~~~~~~~~lr~~i 1446 (2602)
++.+..++++++|.++.+..++ .|+ .+.|+.+.+++.+.+.+. .+|+... ...++|+++
T Consensus 15 ~~~~~a~~~~~~G~~vI~l~~G-~p~---------~~~p~~i~~~~~~~~~~~~~~Y~~~~----------G~~~lR~ai 74 (375)
T d1o4sa_ 15 ELDAKAKALIKKGEDVINLTAG-EPD---------FPTPEPVVEEAVRFLQKGEVKYTDPR----------GIYELREGI 74 (375)
T ss_dssp HHHHHHHHHHHTTCCCEECCCS-SCS---------SCCCHHHHHHHHHHHTTCCCCCCCTT----------CCHHHHHHH
T ss_pred HHHHHHHHHHHCCCCeEECCCc-CCC---------CCCCHHHHHHHHHHHhcCCcCCCCCc----------CCHHHHHHH
Confidence 3567777888889888777777 342 366788999999988652 2333321 134566666
Q ss_pred HHHh----C--CCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCC--CC
Q psy15216 1447 AQLI----Y--ADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NG 1518 (2602)
Q Consensus 1447 a~~~----g--~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~ 1518 (2602)
++++ + .+++++++|+|+++|+..++.++. ++||+|++++|.|+.+....... |.....++.+. ++
T Consensus 75 a~~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~----~~gd~vlv~~P~y~~~~~~~~~~---~~~~~~~~~~~~~~~ 147 (375)
T d1o4sa_ 75 AKRIGERYKKDISPDQVVVTNGAKQALFNAFMALL----DPGDEVIVFSPVWVSYIPQIILA---GGTVNVVETFMSKNF 147 (375)
T ss_dssp HHHHHHHHTCCCCGGGEEEESHHHHHHHHHHHHHC----CTTCEEEEEESCCTTHHHHHHHT---TCEEEEEECCGGGTT
T ss_pred HhhhhhccccccccccccccCcHHHHHHHHHHHHh----CCCCEEEEccCccccchhhhhcc---ccccccccccccccc
Confidence 6655 3 477899999999999999999998 89999999999999987766655 77887777654 56
Q ss_pred CcChhHHHhhccCCceEEEEeccccccccccC---hHHHHHHhhhcCCEEEEecccccCccc------cc-CCCCCccEE
Q psy15216 1519 LITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQAVGKID------IN-IQNYKVDLM 1588 (2602)
Q Consensus 1519 ~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~---l~~I~~ia~~~gi~vivD~a~~~g~~~------~~-l~~~~~D~~ 1588 (2602)
.+|.+.++....++++++++++|+||||.+++ +++|+++|++|+++||.|+++...... +. ....+.-++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~l~nP~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~ 227 (375)
T d1o4sa_ 148 QPSLEEVEGLLVGKTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVY 227 (375)
T ss_dssp CCCHHHHHHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEE
T ss_pred cchhHHHHHhhccCccEEEEeCCCCCccCCCCHHHHHHHHHhHHHcCCceehHhhhccccccccccccccccCCCCCEEE
Confidence 68999999999999999999999999999998 667888899999999999987643221 11 122334588
Q ss_pred EEccccccCCCc--eEEEEEecCCCCccccccccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15216 1589 SFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLY 1666 (2602)
Q Consensus 1589 v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~ 1666 (2602)
+.|++|.+|++| +||++.+++.++.+...... ............ +............+.+...++.+.
T Consensus 228 ~~S~SK~~~l~G~R~G~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~r~~~~~ 297 (375)
T d1o4sa_ 228 INGFSKSHSMTGWRVGYLISSEKVATAVSKIQSH-------TTSCINTVAQYA---ALKALEVDNSYMVQTFKERKNFVV 297 (375)
T ss_dssp EEESTTTTTCGGGCCEEEECCHHHHHHHHHHHHH-------HTCSCCHHHHHH---HHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred EeechhhccCCccccccccccccchhhhhhhhcc-------ccccccccchhh---hhhhcccchhhhHHHHHHHHHHHH
Confidence 889999888778 89999988665544322110 011222222221 222222334556667778888888
Q ss_pred HHHhhcCCcEEEeCCCCCCCCceEEEEEecCCcHHHHHhc---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEE
Q psy15216 1667 NGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIR 1743 (2602)
Q Consensus 1667 ~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iR 1743 (2602)
+.|.+ .|+.+..|... ....+.++. +..++...| +||.+++|..|..+ +++|
T Consensus 298 ~~l~~--~g~~~~~p~gg---~f~~~~~~~-~~~~~~~~ll~~~gV~v~pG~~F~~~-------------------g~iR 352 (375)
T d1o4sa_ 298 ERLKK--MGVKFVEPEGA---FYLFFKVRG-DDVKFCERLLEEKKVALVPGSAFLKP-------------------GFVR 352 (375)
T ss_dssp HHHHH--TTCCCCCCSBS---SEEEEECSS-CHHHHHHHHHHHHCEECEEGGGGTCT-------------------TEEE
T ss_pred HHHHh--cCceEecCCcc---EEEEEECCC-CHHHHHHHHHHhCCEEEEEccccCCC-------------------CeEE
Confidence 88887 46665533221 112222332 344555544 69999999988654 8999
Q ss_pred EecCCCCCHHHHHHHHHHHHH
Q psy15216 1744 FTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1744 ls~~~~~t~edid~li~~L~~ 1764 (2602)
|+++ ++.++++.++++|++
T Consensus 353 is~~--~~~e~l~~al~rl~~ 371 (375)
T d1o4sa_ 353 LSFA--TSIERLTEALDRIED 371 (375)
T ss_dssp EECC--SCHHHHHHHHHHHHH
T ss_pred EEEc--CCHHHHHHHHHHHHH
Confidence 9997 478999999999987
|
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Probab=99.86 E-value=3.4e-20 Score=238.72 Aligned_cols=337 Identities=13% Similarity=-0.012 Sum_probs=245.8
Q ss_pred CCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCC-----cEEEeCCHHHHHHHHHHhhhhh
Q psy15216 1403 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPR-----EIIWTSGATESNNLAIKGAAHF 1477 (2602)
Q Consensus 1403 ~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~-----~iv~t~gaT~al~~al~~l~~~ 1477 (2602)
+..++.+.+.+.+.+.....+. ...+...++..++.+++++++|++.. .-++|+|+|+|+.+++.+....
T Consensus 64 t~~~~~~~~l~~~~~~~N~~~~-----~~~P~~~~lE~~~v~~la~L~~~p~~~~~~~~G~~t~GgSeA~~~a~~aar~~ 138 (450)
T d1pmma_ 64 TWDDENVHKLMDLSINKNWIDK-----EEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWR 138 (450)
T ss_dssp CCCCHHHHHHHHHTTTCBTTCT-----TTSHHHHHHHHHHHHHHHHHTTCCCCTTSCCSEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhcCCCCc-----ccCccHHHHHHHHHHHHHHHhCCCccccCCCcCeeeCchHHHHHHHHHHHHHH
Confidence 4556677777777665533322 23456678889999999999998432 2689999999999999887632
Q ss_pred hc--------cCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCC-CCCcChhHHHhhccCCceEEEEeccccccccc
Q psy15216 1478 YK--------KRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NGLITLSQLEEKICSDTILVSVMLVNNEIGVI 1548 (2602)
Q Consensus 1478 ~~--------~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~-~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~ 1548 (2602)
.. .....++++...|.++..+++++ |+.++.|++++ ++.+|+++|+++++++|.+|+.++++|.||.+
T Consensus 139 ~~~~~~~~g~~~~~~~~~~~~~H~s~~Kaa~~~---gi~~~~v~~~~~~~~~d~~~L~~~i~~~t~~Vv~t~gtt~tG~~ 215 (450)
T d1pmma_ 139 WRKRMEAAGKPTDKPNLVCGPVQICWHKFARYW---DVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNY 215 (450)
T ss_dssp HHHHHHHHTCCCSCCEEEESSCCHHHHHHHHHT---TCEEEECCCBTTBCSCCHHHHHHHCCTTEEEEECBBSCTTTCBB
T ss_pred HHHHhhhcCCCCCCceEEecccHHHHHHHHHHc---CCCceEeeecCCCCcCcHHHHHHHhhhCceEEEeeeeeccCCCc
Confidence 11 12335788888899888877777 99999999886 58999999999999999999999999999999
Q ss_pred cChHHHHHHh------hhcCCEEEEecccccCcccccCCC-------CCccEEEEcccc-ccCCCceEEEEEecCCC-Cc
Q psy15216 1549 QPILEIGELC------RSKGVIFHCDAAQAVGKIDINIQN-------YKVDLMSFSAHK-IYGPKGIGALYIRRNPR-TR 1613 (2602)
Q Consensus 1549 ~~l~~I~~ia------~~~gi~vivD~a~~~g~~~~~l~~-------~~~D~~v~S~~K-~~gp~G~G~l~~~~~~~-~~ 1613 (2602)
.|+++|.++| +++|+|+|||+|++.+..++.... .++|++++|+|| +++|.|+|+++++++.. ..
T Consensus 216 dpv~~i~~i~~~~~~a~~~~i~lHVDAA~gG~~~p~~~~~~~~~~~~~~aDSi~~s~HK~~~~p~g~g~l~~r~~~~~~~ 295 (450)
T d1pmma_ 216 EFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQ 295 (450)
T ss_dssp CCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSSCEEEEESSGGGSCG
T ss_pred cccchhhHHHHHHHHHhccCcEEEeehhhccceeeeechhhhhhhcccceeEeecChhhccCCCCCeeEEEecChhhhhh
Confidence 9999888775 668999999999987766554332 359999999999 56799999999986532 11
Q ss_pred ---cccccccCCccccCCCCCcchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCC-CCCc
Q psy15216 1614 ---IEAQIHGGGHEYGLRSGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNN-RIPH 1688 (2602)
Q Consensus 1614 ---l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~-~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~-~~~~ 1688 (2602)
..+.+.++........++.+...+.++..++. +...++.++.++..++++++.+.|.+ .+++++..+... ..-.
T Consensus 296 ~~~~~~~yl~~~~~~~~~~~sr~~~~~~~~~~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~-~~~~el~~~~~p~~~l~ 374 (450)
T d1pmma_ 296 ELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAK-LGPYEFICTGRPDEGIP 374 (450)
T ss_dssp GGCEEEEETTEEEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSCEEEEEECCTTTBSS
T ss_pred hcccccCcCCCCcCCCcccCccchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEeCCCCCCceE
Confidence 12333444444444556666666666666666 66788999999999999999999998 788888753322 1112
Q ss_pred eEEEEEec-----CCcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHH
Q psy15216 1689 NLNISFNF-----IEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKL 1761 (2602)
Q Consensus 1689 ~~~~~~~~-----~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~ 1761 (2602)
.+.|.+.. .+..++...| +|+.+........ ......+|+.+...+|.+++|++++.
T Consensus 375 ~V~Fr~~~~~~~~~~~~~l~~~L~~~Gw~v~~~~~p~~----------------~~~~~~lRvvv~~~~t~e~~d~lv~d 438 (450)
T d1pmma_ 375 AVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGE----------------ATDIVVMRIMCRRGFEMDFAELLLED 438 (450)
T ss_dssp EEEEEECTTCCCSSCHHHHHHHHHTTTCBCCEEECCTT----------------CTTCEEEEEECCTTCCHHHHHHHHHH
T ss_pred EEEEecCCcccCCCCHHHHHHHHHHcCCeeeccCcCCC----------------cCCcEEEEEEccCCCCHHHHHHHHHH
Confidence 34455432 2334566666 6665532211100 01125799999999999999999999
Q ss_pred HHH
Q psy15216 1762 LKM 1764 (2602)
Q Consensus 1762 L~~ 1764 (2602)
|++
T Consensus 439 l~~ 441 (450)
T d1pmma_ 439 YKA 441 (450)
T ss_dssp HHH
T ss_pred HHH
Confidence 986
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Probab=99.86 E-value=3.5e-21 Score=247.39 Aligned_cols=340 Identities=12% Similarity=0.086 Sum_probs=228.7
Q ss_pred HHHHHHHHHhcCCCccccceeeeeceeeeccCCCCCCCHHHHHHHHHHHhhc-cCCCCCccchhHHHHHHHHHHHHHHHH
Q psy15216 1369 FIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDATTPIDPRVVDKMIPYLRVQ-FGNPASRNHIYGWTAEKAIEKARNEVA 1447 (2602)
Q Consensus 1369 ~~~v~~aL~~~g~~~~~~ei~~iP~~~v~L~~~~~~~~~~v~eal~~~l~~~-~~np~~~~~~~~~~~~~~~~~lr~~ia 1447 (2602)
.+.+.+.+.+.|.++....++ .| +.+.|+.+++++.+.++.. ++|+.. ..++|++++
T Consensus 19 ~~~~~~~~~~~g~~vi~l~~g-~p---------df~~p~~v~~al~~~~~~~~~~Y~~g------------~~~Lr~aia 76 (394)
T d1c7na_ 19 WDLMYSQNPEVGNEVVPLSVA-DM---------EFKNPPELIEGLKKYLDETVLGYTGP------------TEEYKKTVK 76 (394)
T ss_dssp HHHHHHHCTTCCTTCCCCCSS-SC---------SSCCCHHHHHHHHHHHHHCCCSSBCC------------CHHHHHHHH
T ss_pred HHHHHHHhHhcCCCeEEccCC-CC---------CCCCCHHHHHHHHHHHhCCCcCCCCC------------CHHHHHHHH
Confidence 344445555666676666665 34 2488899999999998763 334321 124556666
Q ss_pred HHh----CC--CCCcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCC---CC
Q psy15216 1448 QLI----YA--DPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN---NG 1518 (2602)
Q Consensus 1448 ~~~----g~--~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~---~~ 1518 (2602)
+++ |. ++++|++|+|+++|+..+++++. +|||+|+++.|.|+.+......+ |...+.++... .+
T Consensus 77 ~~~~~~~g~~~~~~~I~vt~G~~~al~~~~~~~~----~pgd~vi~~~p~~~~~~~~~~~~---g~~~v~~~~~~~~~~~ 149 (394)
T d1c7na_ 77 KWMKDRHQWDIQTDWIINTAGVVPAVFNAVREFT----KPGDGVIIITPVYYPFFMAIKNQ---ERKIIECELLEKDGYY 149 (394)
T ss_dssp HHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHC----CTTCEEEECSSCCTHHHHHHHTT---TCEEEECCCEEETTEE
T ss_pred HHHHHhcCCCCCCcceEeeccchhhhhhhhcccc----ccccccccccCcccchhhHHhhh---hhcccccccccccccc
Confidence 654 54 77899999999999999999987 89999999999998887666555 88888776542 34
Q ss_pred CcChhHHHhhcc-CCceEEEEeccccccccccC---hHHHHHHhhhcCCEEEEecccccCcc----cccCCC-----CCc
Q psy15216 1519 LITLSQLEEKIC-SDTILVSVMLVNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQAVGKI----DINIQN-----YKV 1585 (2602)
Q Consensus 1519 ~id~d~l~~~i~-~~t~lv~l~~~~n~tG~~~~---l~~I~~ia~~~gi~vivD~a~~~g~~----~~~l~~-----~~~ 1585 (2602)
.+|.+.++.++. ++|+++++++||||||.+++ +++|+++|++|++++|+|++|..-.. ...... ...
T Consensus 150 ~~d~~~~~~~~~~~~~~~i~l~~P~NPTG~v~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~ 229 (394)
T d1c7na_ 150 TIDFQKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADK 229 (394)
T ss_dssp ECCHHHHHHHHTCTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTT
T ss_pred cchhhhhhhhhccccceEEEecccccccceeccHHHhhhhhccccccceeEeccccccccccCCccccchhhhhcccccc
Confidence 578898888774 67999999999999999999 66788999999999999999853211 001010 123
Q ss_pred cEEEEccccccCCCc--eEEEEEecCCC-CccccccccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15216 1586 DLMSFSAHKIYGPKG--IGALYIRRNPR-TRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQ 1662 (2602)
Q Consensus 1586 D~~v~S~~K~~gp~G--~G~l~~~~~~~-~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~ 1662 (2602)
-+++.|++|.++++| +|++++++..+ +.+..... ....++.......+...+........++...++.+.+
T Consensus 230 ~i~~~s~SK~~~~~G~R~g~~~~~~~~i~~~~~~~~~------~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 303 (394)
T d1c7na_ 230 TITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRD------ATSGMPFTTLGYKACEICYKECGKWLDGCIKVIDKNQ 303 (394)
T ss_dssp EEEEECSHHHHTCGGGCCEEEECCCHHHHHHHHHHHH------HTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred eeecccccccccccccccccccccChhhhhhhhhhhh------hccccccccccchhhhhhhcchhhhhcccccccchhh
Confidence 477889999887777 78888876433 22222110 0111222222333332333333445667777777777
Q ss_pred HHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEec--CCcHHHHHhc---CCEEEccccccCCCCCChhHHHHHcCCCccc
Q psy15216 1663 KRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF--IEGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDEL 1737 (2602)
Q Consensus 1663 ~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~ 1737 (2602)
+.+.+.+....+++.+..+... ....+.++. .+..++...| .||.+.+|..|+..
T Consensus 304 ~~~~~~l~~~~~~~~~~~p~g~---~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~----------------- 363 (394)
T d1c7na_ 304 RIVKDFFEVNHPEIKAPLIEGT---YLQWIDFRALKMDHKAMEEFMIHKAQIFFDEGYIFGDG----------------- 363 (394)
T ss_dssp HHHHHHHHHHCTTSBCCCCSBS---SEEEEECGGGCCCHHHHHHHHHHTTCCCCEEGGGGCGG-----------------
T ss_pred hhhhhhhhccccceeecCCCce---eEEEEECCCCCCCHHHHHHHHHHhCCEEEEcchhhCCC-----------------
Confidence 8888777764556554422211 122233332 3566776665 59999999988642
Q ss_pred cCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1738 AHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1738 ~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
..+++|||++ .++++++.++++|++.
T Consensus 364 ~~~~iRis~~--~~~e~i~eal~rl~~~ 389 (394)
T d1c7na_ 364 GIGFERINLA--APSSVIQESLERLNKA 389 (394)
T ss_dssp GTTEEEEECC--SCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEe--CCHHHHHHHHHHHHHH
Confidence 2389999987 4788999999988863
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Probab=99.86 E-value=5.5e-21 Score=245.46 Aligned_cols=319 Identities=12% Similarity=0.079 Sum_probs=217.3
Q ss_pred CCCHHHHHHHHHHHhhh-cCCCCCCCcchhhhHHHHHHHHHHHHHHHhCC--CCCcEEEeCCHHHHHHHHHHhccccccc
Q psy15216 8 PIDPRVVDKMIPYLRVQ-FGNPASRNHIYGWTAEKAIEKARNEVAQLIYA--DPREIIWTSGATESNNLAIKGAAHFYKK 84 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~-~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~--~~~~Iv~t~g~T~al~~~~~~l~~~~~~ 84 (2602)
|+|+.+++++.+++... ++|+. + ..++.+.+.+++++.+|. ++++|++|+|+++|+.++++++. +
T Consensus 44 ~~p~~v~~al~~~~~~~~~~Y~~------g--~~~Lr~aia~~~~~~~g~~~~~~~I~vt~G~~~al~~~~~~~~----~ 111 (394)
T d1c7na_ 44 KNPPELIEGLKKYLDETVLGYTG------P--TEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREFT----K 111 (394)
T ss_dssp CCCHHHHHHHHHHHHHCCCSSBC------C--CHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHC----C
T ss_pred CCCHHHHHHHHHHHhCCCcCCCC------C--CHHHHHHHHHHHHHhcCCCCCCcceEeeccchhhhhhhhcccc----c
Confidence 78999999999998752 22322 1 123444445555555565 67899999999999999999998 8
Q ss_pred CCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCC---CCccChHHHHhhcc-CCceEEEEecccCccccccc---HHH
Q psy15216 85 RGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN---NGLITLSQLEEKIC-SDTILVSVMLVNNEIGVIQP---ILE 157 (2602)
Q Consensus 85 ~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~---~~~ld~e~l~~~i~-~~tklv~i~~~~npTG~~~~---l~~ 157 (2602)
|||.|+++.|.|+.+......+ |...+.++... .+.+|.+.++.++. ++++++++++||||||.+++ +++
T Consensus 112 pgd~vi~~~p~~~~~~~~~~~~---g~~~v~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~l~~P~NPTG~v~s~~~l~~ 188 (394)
T d1c7na_ 112 PGDGVIIITPVYYPFFMAIKNQ---ERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQK 188 (394)
T ss_dssp TTCEEEECSSCCTHHHHHHHTT---TCEEEECCCEEETTEEECCHHHHHHHHTCTTEEEEEEESSBTTTTBCCCHHHHHH
T ss_pred cccccccccCcccchhhHHhhh---hhcccccccccccccccchhhhhhhhhccccceEEEecccccccceeccHHHhhh
Confidence 9999999999999887766655 88888877532 34578888888774 67999999999999999999 456
Q ss_pred HHHHHHhcCCEEEEecccccccc------cccCCC---CCccEEEeccccccCCCC--cEEEEEecCCC-CcccceecCC
Q psy15216 158 IGELCRSKGVIFHCDAAQAVGKI------DINIQN---YKVDLMSFSAHKIYGPKG--IGALYIRRNPR-TRIEAQIHGG 225 (2602)
Q Consensus 158 I~~la~~~g~~livD~a~a~g~~------~~dl~~---~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~-~~l~~~~~g~ 225 (2602)
|+++|++|+++||+|++|..-.. +..... ...-+++.|++|.||++| +||+++++..+ +.+.....
T Consensus 189 l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~R~g~~~~~~~~i~~~~~~~~~-- 266 (394)
T d1c7na_ 189 IKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRD-- 266 (394)
T ss_dssp HHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEECCCHHHHHHHHHHHH--
T ss_pred hhccccccceeEeccccccccccCCccccchhhhhcccccceeecccccccccccccccccccccChhhhhhhhhhhh--
Confidence 78889999999999999863211 111000 123477889999888777 78888876433 22322110
Q ss_pred CccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc--cCh
Q psy15216 226 GHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF--IEG 303 (2602)
Q Consensus 226 ~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~--~~~ 303 (2602)
.....+.+.....++..+......+.++...++.+.++.+.+.+....+++....+.. ....++.++. .++
T Consensus 267 ----~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~g---~~~~~~~~~~~~~~~ 339 (394)
T d1c7na_ 267 ----ATSGMPFTTLGYKACEICYKECGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLIEG---TYLQWIDFRALKMDH 339 (394)
T ss_dssp ----HTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSBCCCCSB---SSEEEEECGGGCCCH
T ss_pred ----hccccccccccchhhhhhhcchhhhhcccccccchhhhhhhhhhhccccceeecCCCc---eeEEEEECCCCCCCH
Confidence 0011222222333332333333455677777777778888877766456665543332 2234445553 466
Q ss_pred hHHHHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 304 ESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 304 ~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
.++.+.| .||.+.+|..|..+ ..+++|||++ +++++++..+++|++.
T Consensus 340 ~~~~~~Ll~~~gV~v~pG~~Fg~~-----------------~~~~iRis~~--~~~e~i~eal~rl~~~ 389 (394)
T d1c7na_ 340 KAMEEFMIHKAQIFFDEGYIFGDG-----------------GIGFERINLA--APSSVIQESLERLNKA 389 (394)
T ss_dssp HHHHHHHHHTTCCCCEEGGGGCGG-----------------GTTEEEEECC--SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCEEEEcchhhCCC-----------------CCCEEEEEEe--CCHHHHHHHHHHHHHH
Confidence 7777766 49999999887542 2389999997 4788899988888863
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Probab=99.86 E-value=1.5e-20 Score=237.70 Aligned_cols=280 Identities=19% Similarity=0.185 Sum_probs=205.1
Q ss_pred HHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCC-EEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCC
Q psy15216 1440 EKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK-HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNG 1518 (2602)
Q Consensus 1440 ~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd-~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~ 1518 (2602)
.++|+++++++|+++++|++|+|+++++.++++++. +||| .|++++|.|+.+...+..+ |.+++.++.++++
T Consensus 59 ~~Lr~~ia~~~gv~pe~I~it~Gs~eai~~~~~~~~----~pgd~~Vl~~~P~y~~~~~~~~~~---g~~v~~~~~~~~~ 131 (354)
T d1fg7a_ 59 KAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAFC----EPGKDAILYCPPTYGMYSVSAETI---GVECRTVPTLDNW 131 (354)
T ss_dssp HHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHC----CTTTCEEEECSSSCTHHHHHHHHH---TCEEEECCCCTTS
T ss_pred HHHHHHHHHHhCCChHHeeeccCchHHHHHHHHHhh----ccccccccccccccccchhhhhcc---Cceeecccccccc
Confidence 478999999999999999999999999999999997 8998 6889999999998888877 9999999988888
Q ss_pred CcChhHHHhhccCCceEEEEeccccccccccChHH---HHHHhhhcCCEEEEecccccCc----ccccCCCCCccEEEEc
Q psy15216 1519 LITLSQLEEKICSDTILVSVMLVNNEIGVIQPILE---IGELCRSKGVIFHCDAAQAVGK----IDINIQNYKVDLMSFS 1591 (2602)
Q Consensus 1519 ~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~---I~~ia~~~gi~vivD~a~~~g~----~~~~l~~~~~D~~v~S 1591 (2602)
.+|++++++++ +++++|++++||||||.+++.++ +...+ +++.++++|+++.-.. .+.........+++.|
T Consensus 132 ~~d~~~l~~~~-~~~~~v~~~~pnNPtG~~~~~~~~~~~~~~~-~~~~~~iidd~~~~f~~~~~~~~~~~~~~~~iv~~S 209 (354)
T d1fg7a_ 132 QLDLQGISDKL-DGVKVVYVCSPNNPTGQLINPQDFRTLLELT-RGKAIVVADEAYIEFCPQASLAGWLAEYPHLAILRT 209 (354)
T ss_dssp CCCHHHHHTSC-TTEEEEEEESSCTTTCCCCCHHHHHHHHHHH-TTTCEEEEECTTGGGSGGGCSGGGTTTCTTEEEEEE
T ss_pred ccchhhhhhcc-cccceeeccCCCccceeEeeecccccccccc-cccccccccccchhhccccccchhhcccccceEEeC
Confidence 99999999887 57999999999999999999544 44444 3566777777653211 1111222334577789
Q ss_pred cccccCCCc--eEEEEEecCCCCccccccccCCccccCCCCCcchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q psy15216 1592 AHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNG 1668 (2602)
Q Consensus 1592 ~~K~~gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~-~~~~~~~~~~~~~~~l~~~l~~~ 1668 (2602)
|+|.+|++| +||++++++.++.+.... .....+.+.+.++.+++. ..........+++.+.++++.+.
T Consensus 210 ~SK~~~laGlRiGy~i~~~~~i~~l~~~~---------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~r~~l~~~ 280 (354)
T d1fg7a_ 210 LSKAFALAGLRCGFTLANEEVINLLMKVI---------APYPLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAA 280 (354)
T ss_dssp SSSTTCCGGGCCEEEEECHHHHHHHHHHS---------CSSCSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccCCCccccccccccchhhhhhhhhc---------CccchhhHHHHHHHHHHhhhccccccccchhhhhHHHHHHHH
Confidence 999999888 899999988776664432 112233333332323332 22233455667778888899999
Q ss_pred HhhcCCcEEEeCCCCCCCCceEEEEEecCCcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEec
Q psy15216 1669 LMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTI 1746 (2602)
Q Consensus 1669 L~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~ 1746 (2602)
+.+ ++++....++.. . ++++...+..++...| +||.++++..+... .+++|||+
T Consensus 281 l~~-~~~~~~~~p~~~---~--f~~~~~~~~~~~~~~L~~~gIlvr~~~~~~~~------------------~~~lRisi 336 (354)
T d1fg7a_ 281 LKE-IPCVEQVFDSET---N--YILARFKASSAVFKSLWDQGIILRDQNKQPSL------------------SGCLRITV 336 (354)
T ss_dssp HHH-STTEEEECCCSS---S--EEEEEETTHHHHHHHHHHTTEECEECTTSTTC------------------TTEEEEEC
T ss_pred HHh-CCCcceeCCCCc---e--EEEEeCCCHHHHHHHHHHCCcEEecCCCCCCC------------------CCEEEEEe
Confidence 988 677754433222 2 2334444667777766 89999987654321 28999999
Q ss_pred CCCCCHHHHHHHHHHHHH
Q psy15216 1747 GRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1747 ~~~~t~edid~li~~L~~ 1764 (2602)
+ |++|+++++++|+.
T Consensus 337 g---t~ee~~~~l~aLka 351 (354)
T d1fg7a_ 337 G---TREESQRVIDALRA 351 (354)
T ss_dssp C---CHHHHHHHHHHHHT
T ss_pred C---CHHHHHHHHHHHhh
Confidence 7 88999999999984
|
| >d1r9pa_ d.224.1.2 (A:) NifU-like protein HI0377 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: SufE/NifU superfamily: SufE/NifU family: NifU/IscU domain domain: NifU-like protein HI0377 species: Haemophilus influenzae [TaxId: 727]
Probab=99.86 E-value=2e-22 Score=210.58 Aligned_cols=96 Identities=79% Similarity=1.266 Sum_probs=91.3
Q ss_pred hhhhhhhhhhhcCCCCcCcccCCCCcceeeeecCCCCccEEEEEEEEcCCCcEEeeeeeccccchhHhhHHHHHHHHcCC
Q psy15216 1769 MSYSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKTYGCGSAIASSSLVTEWVKGK 1848 (2602)
Q Consensus 1769 ~~y~~~i~dh~~~p~~~g~~~~~~~~~~~~~~~~~~cgd~~~~~~~~~~~~~i~~~~~~~~gc~~~~a~~s~~~~~~~g~ 1848 (2602)
|+|+++|+|||+||||.|.+++++..+..++.+||.|||.|+||++|+++++|+|++|+++||++++|||||+||+++||
T Consensus 1 m~Y~e~Ildh~~~Prn~g~l~~~d~~~~~~~~~np~CGD~v~i~l~i~~~~~I~di~f~~~GCais~Asas~~~e~i~Gk 80 (134)
T d1r9pa_ 1 MAYSEKVIDHYENPRNVGSLDKKDSNVGTGMVGAPACGDVMQLQIKVDDNGIIEDAKFKTYGCGSAIASSSLITEWVKGK 80 (134)
T ss_dssp CCSCCSCCCSCSCCCCCSSSSSCCSSEEEEEEEETTTTEEEEEEEEECSSSBEEEEEEEEESSSSHHHHHHHHHHHSSSS
T ss_pred CCcHHHHHHHhhCcCCCCCCCCCCcchhhhccCCCCcccEEEEEEEEcCCceEEEEEEEeccCcccHhHHHHHHHHHHhC
Confidence 68999999999999999999999988888899999999999999999877899999999999999999999999999999
Q ss_pred Chhhhhcccccchhhh
Q psy15216 1849 TLDEAMSIKNTDIAEE 1864 (2602)
Q Consensus 1849 ~~~~~~~i~~~~i~~~ 1864 (2602)
|++||..|++..+.+.
T Consensus 81 t~~ea~~i~~~~i~e~ 96 (134)
T d1r9pa_ 81 SLEEAGAIKNSQIAEE 96 (134)
T ss_dssp BHHHHTTSHHHHHHHH
T ss_pred CHHHHHHhcchHHHHh
Confidence 9999999998887765
|
| >d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: L-threonine-O-3-phosphate decarboxylase CobD species: Salmonella enterica [TaxId: 28901]
Probab=99.85 E-value=3.7e-20 Score=234.55 Aligned_cols=316 Identities=15% Similarity=0.109 Sum_probs=222.6
Q ss_pred eeeeccC--CCCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHH
Q psy15216 1394 TNIVFKD--ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAI 1471 (2602)
Q Consensus 1394 ~~v~L~~--~~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al 1471 (2602)
..+.|+. +..++|+.+++++.+.......||+.+ ..++|+++++++|+++++|++++|+++++.+++
T Consensus 23 ~~idls~~~np~~~p~~~~~a~~~~~~~~~~Yp~~~-----------~~~Lr~aia~~~~v~~~~I~~~~g~~~~~~~~~ 91 (355)
T d1lc5a_ 23 QLLDFSANINPLGMPVSVKRALIDNLDCIERYPDAD-----------YFHLHQALARHHQVPASWILAGNGETESIFTVA 91 (355)
T ss_dssp GSEECSSCCCTTCCCHHHHHHHHHTGGGGGSCCCTT-----------CHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHH
T ss_pred heEEccCCCCCCCCCHHHHHHHHHHHHHhccCCCCC-----------hHHHHHHHHHHhCCCHHHEEecccHHHHHHHHH
Confidence 3444542 335678889999999887765666542 246899999999999999999999999988776
Q ss_pred HhhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCC-CCCcChhHHHhhccCCceEEEEeccccccccccC
Q psy15216 1472 KGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP 1550 (2602)
Q Consensus 1472 ~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~-~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~ 1550 (2602)
..+ .++.+++..|.|+.+....... ++.+..++++. ++....+.+.+++++++++|++++|+||||.+++
T Consensus 92 ~~~------~~~~~~v~~p~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~l~nP~NPtG~~~~ 162 (355)
T d1lc5a_ 92 SGL------KPRRAMIVTPGFAEYGRALAQS---GCEIRRWSLREADGWQLTDAILEALTPDLDCLFLCTPNNPTGLLPE 162 (355)
T ss_dssp HHH------CCSEEEEEESCCTHHHHHHHHT---TCEEEEEECCGGGTTCCCTTHHHHCCTTCCEEEEESSCTTTCCCCC
T ss_pred hhh------ccccccccCCccceeccccccc---cccceeeeeeccCCccceeeeeeccccccceeeeecccCcccccch
Confidence 654 3455666677887776554444 78888888764 3334446788889999999999999999999999
Q ss_pred ---hHHHHHHhhhcCCEEEEecccccCc----cccc-CCCCCccEEEEccccccCCCc--eEEEEEecCCCC-ccccccc
Q psy15216 1551 ---ILEIGELCRSKGVIFHCDAAQAVGK----IDIN-IQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRT-RIEAQIH 1619 (2602)
Q Consensus 1551 ---l~~I~~ia~~~gi~vivD~a~~~g~----~~~~-l~~~~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~-~l~~~~~ 1619 (2602)
+.+|+++|++|++++++|+++.... .... ....+..+++.|++|.+|++| +||++++++.+. .+....
T Consensus 163 ~e~l~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~GlR~G~~i~~~~~~~~~~~~~~- 241 (355)
T d1lc5a_ 163 RPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSDDAAMARMRRQQ- 241 (355)
T ss_dssp HHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTTTCTTTCCEEEECCCHHHHHHHHHHS-
T ss_pred hhhhhhhhhhccccccccccccceeeeeeecccccccccccccceeecccccccccccccccceeccchhhhHHHHhhc-
Confidence 6678888899999999999986321 1111 222234588889999988888 899998865332 222111
Q ss_pred cCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecCCc
Q psy15216 1620 GGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEG 1699 (2602)
Q Consensus 1620 g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~ 1699 (2602)
.+.+.+.....++.++++. ...+.+.++++++.++++.+.|.+ ++++.+.+ ... ....+.++ .+.
T Consensus 242 --------~~~~~~~~~~~~a~~~l~~-~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~p-~~~---~f~~~~~~-~~~ 306 (355)
T d1lc5a_ 242 --------MPWSVNALAALAGEVALQD-SAWQQATWHWLREEGARFYQALCQ-LPLLTVYP-GRA---NYLLLRCE-RED 306 (355)
T ss_dssp --------CTTCSCHHHHHHHHHGGGC-HHHHHHHHHHHHHHHHHHHHHHHT-STTEEECC-CSS---SEEEEEES-CTT
T ss_pred --------CCccccccccccccccccc-cchhHHHHHHHHHHHHHHHHHHhh-cCCcEECC-CCC---EEEEEECC-CCH
Confidence 1234445555555556552 234667777888888999999987 77887653 221 22333333 244
Q ss_pred HHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1700 ESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1700 ~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
.++...| +||.++++..|... ..+++|||++ +++|+++++++|++.
T Consensus 307 ~~~~~~L~~~gv~vr~~~~f~~~-----------------~~~~iRis~~---~~~e~~~li~aL~~i 354 (355)
T d1lc5a_ 307 IDLQRRLLTQRILIRSCANYPGL-----------------DSRYYRVAIR---SAAQNERLLAALRNV 354 (355)
T ss_dssp CCHHHHHHTTTEECEECTTSTTC-----------------CTTEEEEECC---CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCcEEEeCccCCCC-----------------CCCEEEEEeC---CHHHHHHHHHHHHHh
Confidence 5566555 89999998776432 1379999997 789999999999973
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Probab=99.85 E-value=3.6e-20 Score=235.26 Aligned_cols=323 Identities=11% Similarity=0.088 Sum_probs=221.3
Q ss_pred CCCCCHHHHHHHHHHHhh-ccCCCCCccchhHHHHHHHHHHHHHHHHHHhCC--CCCcEEEeCCHHHHHHHHHHhhhhhh
Q psy15216 1402 TTPIDPRVVDKMIPYLRV-QFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA--DPREIIWTSGATESNNLAIKGAAHFY 1478 (2602)
Q Consensus 1402 ~~~~~~~v~eal~~~l~~-~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~--~~~~iv~t~gaT~al~~al~~l~~~~ 1478 (2602)
+.+.|+.+.+++.+.+.. ..+|+..+ + .++.+.+.+++++.+|. ++++|++|+|+++++..++.++.
T Consensus 10 df~~p~~i~eal~~~~~~~~~~Y~~~~----g---~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~~l~~~~~~l~--- 79 (361)
T d1d2fa_ 10 DFATAPCIIEALNQRLMHGVFGYSRWK----N---DEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWS--- 79 (361)
T ss_dssp SSCCCHHHHHHHHHHHTTCCCCCCCSC----C---HHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHSS---
T ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCC----C---HHHHHHHHHHHHHHhCCCCCcceEEEeCCHHHHHHHHhhhcc---
Confidence 457889999999998865 23344331 1 12344444555555565 77899999999999999999997
Q ss_pred ccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCC---CCCcChhHHHhhcc-CCceEEEEeccccccccccC---h
Q psy15216 1479 KKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN---NGLITLSQLEEKIC-SDTILVSVMLVNNEIGVIQP---I 1551 (2602)
Q Consensus 1479 ~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~---~~~id~d~l~~~i~-~~t~lv~l~~~~n~tG~~~~---l 1551 (2602)
+|||+|++++|.|+++...+..+ |..++.++.+. ++.+|++.+++.+. ++++++++++|+||||.+++ +
T Consensus 80 -~~gd~Vlv~~P~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~~d~~~~~~~~~~~~~~~i~l~~p~NPTG~~~s~~~~ 155 (361)
T d1d2fa_ 80 -ETGEGVVIHTPAYDAFYKAIEGN---QRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDEL 155 (361)
T ss_dssp -CTTCEEEEEESCCHHHHHHHHHT---TCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEESSCTTTCCCCCTTHH
T ss_pred -ccccccccccccccchhHHHHhh---cceEEeecccccccccccccccchhhcccCCceeEEecccccccccccchhhh
Confidence 89999999999999988777665 88888887642 34589999999985 68999999999999999998 7
Q ss_pred HHHHHHhhhcCCEEEEecccccCc----ccccCCC--CCccEEEEccccccCCCc--eEEEEEecCCC-CccccccccCC
Q psy15216 1552 LEIGELCRSKGVIFHCDAAQAVGK----IDINIQN--YKVDLMSFSAHKIYGPKG--IGALYIRRNPR-TRIEAQIHGGG 1622 (2602)
Q Consensus 1552 ~~I~~ia~~~gi~vivD~a~~~g~----~~~~l~~--~~~D~~v~S~~K~~gp~G--~G~l~~~~~~~-~~l~~~~~g~~ 1622 (2602)
++|+++|++||+++|+|++|+... .+..+.. ....+++.|++|.++++| +||+++..... ........
T Consensus 156 ~~i~~~~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~v~~~s~SK~~~~~g~R~g~~~~~~~~~~~~~~~~~~--- 232 (361)
T d1d2fa_ 156 EIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVARGDWALLTSGSKSFNIPALTGAYGIIENSSSRDAYLSALK--- 232 (361)
T ss_dssp HHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCCSSEEEEECSHHHHTCGGGCCEEEEECSHHHHHHHHHHHH---
T ss_pred hhhhhhhhhhheeeeecccccccccccccccccccccccccccccccccccccccccceeeecchhHHHHHHhhhcc---
Confidence 789999999999999999986421 1111111 223477789999666555 79988764311 11111110
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEe--cCCcH
Q psy15216 1623 HEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN--FIEGE 1700 (2602)
Q Consensus 1623 ~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~--~~~~~ 1700 (2602)
......+++...+.+...++.......+..+..+.++++.+.+.+.+..+++.+..+... ....+.++ ..+..
T Consensus 233 --~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~gg---~~~~~~l~~~~~~~~ 307 (361)
T d1d2fa_ 233 --GRDGLSSPSVLALTAHIAAYQQGAPWLDALRIYLKDNLTYIADKMNAAFPELNWQIPQST---YLAWLDLRPLNIDDN 307 (361)
T ss_dssp --TTSCCCSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCCCCSBC---SEEEEECGGGCCCHH
T ss_pred --cccccccchhhhHHHHHHHhhccchhhhcccccchhhHHHHHHHhhhhcccccccccCce---eEEEEEccCCCCCHH
Confidence 111123445455554444444444456677777777888888877765666655433221 12222332 34667
Q ss_pred HHHHhc---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1701 SLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1701 ~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
++...| +||.+.+|..|+.. ..+++|||++ .+++++++++++|++.
T Consensus 308 ~~~~~Ll~~~gv~v~pG~~F~~~-----------------~~~~vRis~~--~~~e~l~~al~rl~~~ 356 (361)
T d1d2fa_ 308 ALQKALIEQEKVAIMPGYTYGEE-----------------GRGFVRLNAG--CPRSKLEKGVAGLINA 356 (361)
T ss_dssp HHHHHHHHTTCEECEEGGGGCGG-----------------GTTEEEEECC--SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCEEEEeccccCCC-----------------CCCEEEEEEc--CCHHHHHHHHHHHHHH
Confidence 777665 59999999887542 2379999986 4778999988888863
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Probab=99.85 E-value=1.2e-20 Score=242.22 Aligned_cols=342 Identities=13% Similarity=0.085 Sum_probs=239.2
Q ss_pred HHHHHHHHHhcCCCccccceeeeeceeeeccCCCCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHH
Q psy15216 1369 FIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQ 1448 (2602)
Q Consensus 1369 ~~~v~~aL~~~g~~~~~~ei~~iP~~~v~L~~~~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~ 1448 (2602)
+.+..+.+++.|.++.+..++ .|+ .+.|+.+++++.+.......||.. ....++|+++++
T Consensus 16 l~~~a~~~~~~g~~vi~l~~G-~p~---------~~~p~~~~~al~~~~~~~~~Y~~~----------~G~~~LR~aia~ 75 (389)
T d2gb3a1 16 LVPFAEMAKKRGVRIHHLNIG-QPD---------LKTPEVFFERIYENKPEVVYYSHS----------AGIWELREAFAS 75 (389)
T ss_dssp GHHHHHHHHHTTCEEEECSSC-CCC---------SCCCTHHHHHHHHTCCSSCCCCCT----------TCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEECCCC-CCC---------CCCCHHHHHHHHhcCCCCCCCCCC----------cCCHHHHHHHHH
Confidence 455566777778887777766 342 356778888887765444444433 124567777777
Q ss_pred Hh----C--CCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCC-CCcC
Q psy15216 1449 LI----Y--ADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN-GLIT 1521 (2602)
Q Consensus 1449 ~~----g--~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~-~~id 1521 (2602)
++ | +++++|++|+|+++++..++.++. ++||.|+++.|.|+.+....... |..+..++.+.+ +..+
T Consensus 76 ~~~~~~g~~~~~~~I~it~G~~~~l~~~~~~l~----~~gd~V~i~~P~y~~~~~~~~~~---g~~~~~~~~~~~~~~~~ 148 (389)
T d2gb3a1 76 YYKRRQRVDVKPENVLVTNGGSEAILFSFAVIA----NPGDEILVLEPFYANYNAFAKIA---GVKLIPVTRRMEEGFAI 148 (389)
T ss_dssp HHHHTSCCCCCGGGEEEESHHHHHHHHHHHHHC----CTTCEEEEEESCCTHHHHHHHHH---TCEEEEEECCGGGTSCC
T ss_pred HHHHhcCCCcccceEEecccccccccccccccc----cCCCeEEEeCCCCcccccccccc---Cccccccccccccccch
Confidence 66 4 478899999999999999999997 89999999999999988877776 888888887653 4456
Q ss_pred hhHHHhhccCCceEEEEeccccccccccC---hHHHHHHhhhcCCEEEEecccccCccc-----ccCCCCCccEEEEccc
Q psy15216 1522 LSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQAVGKID-----INIQNYKVDLMSFSAH 1593 (2602)
Q Consensus 1522 ~d~l~~~i~~~t~lv~l~~~~n~tG~~~~---l~~I~~ia~~~gi~vivD~a~~~g~~~-----~~l~~~~~D~~v~S~~ 1593 (2602)
.+.+...++++++++++++|+||||.+++ +++|.++|++|++++|.|+++..-... .-.......+++.|++
T Consensus 149 ~~~~~~~~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~v~~s~s 228 (389)
T d2gb3a1 149 PQNLESFINERTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSIESDKVVVIDSVS 228 (389)
T ss_dssp CTTGGGGCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCCTTEEEEEEST
T ss_pred hhhhhhhcccCccEEEeCCCCccccccchHHHHHHHHhhcccCCEEEEEecccccccccccccccccccccccccccccc
Confidence 67788888999999999999999999999 778899999999999999997532211 0011123457778999
Q ss_pred cccCCCc--eEEEEEecCCCCccccccccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15216 1594 KIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLME 1671 (2602)
Q Consensus 1594 K~~gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~ 1671 (2602)
|.++.+| +||++++++.+....... .....+++.....+...++......++..+++++++++.+.+.|.+
T Consensus 229 K~~~~~GlRiG~~~~~~~~i~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~ 301 (389)
T d2gb3a1 229 KKFSACGARVGCLITRNEELISHAMKL-------AQGRLAPPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEE 301 (389)
T ss_dssp TTTTCGGGCCEEEECSCHHHHHHHHHH-------HHHSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCcccceeeeeccchhHHHHHhhh-------hhccccccccccccccccccccchhcccccccccccchhhhhhhhh
Confidence 9777777 899998764332211111 0112234445555554555534456788888999999999999988
Q ss_pred cCCcEEEeCCCCCCCCceEEEEEecCCcHHHHHhc--------CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEE
Q psy15216 1672 SIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI--------KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIR 1743 (2602)
Q Consensus 1672 ~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~L--------~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iR 1743 (2602)
.+..... .+.. .....+.++..++.++...| ++|.+.+|..|... +....+++|
T Consensus 302 -~~~~~~~-~p~~--g~~~~~~lp~~~~~~~~~~ll~e~~l~~~~v~v~pg~~f~~~--------------~~~~~~~iR 363 (389)
T d2gb3a1 302 -HGLKRFT-KPSG--AFYITAELPVEDAEEFARWMLTDFNMDGETTMVAPLRGFYLT--------------PGLGKKEIR 363 (389)
T ss_dssp -TTCCCBC-CCSB--SSEEEEECSSSCHHHHHHHHHHSCCBTTEEEECEEGGGGCSS--------------TTTTSSEEE
T ss_pred -hcccccc-CCCc--eEEEEEeCCCCCHHHHHHHHHHhhhhhhCCEEEEeCcccccC--------------CCCCCCEEE
Confidence 4333222 2221 12333444555666666544 37888888877542 112248999
Q ss_pred EecCCCCCHHHHHHHHHHHHH
Q psy15216 1744 FTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1744 ls~~~~~t~edid~li~~L~~ 1764 (2602)
|++. .+.+++++++++|++
T Consensus 364 is~~--~~~~~l~~a~~~L~~ 382 (389)
T d2gb3a1 364 IACV--LEKDLLSRAIDVLME 382 (389)
T ss_dssp EECC--SCHHHHHHHHHHHHH
T ss_pred EEEc--CCHHHHHHHHHHHHH
Confidence 9986 578899998888886
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Probab=99.84 E-value=1.8e-20 Score=242.69 Aligned_cols=326 Identities=13% Similarity=0.135 Sum_probs=225.0
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCC--C-CCcEEEeCCHHHHHHHHHHhccccccc
Q psy15216 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA--D-PREIIWTSGATESNNLAIKGAAHFYKK 84 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~--~-~~~Iv~t~g~T~al~~~~~~l~~~~~~ 84 (2602)
++|+.+.+++.+++.... +....|.......++.+.+.+++++.+|. + .++|++|+|+++|+.+++.++. +
T Consensus 39 ~~p~~i~eal~~a~~~~~--~~~~~Y~~~~G~~~lReaiA~~~~~~~g~~~~p~~~I~it~G~~~al~~~~~~l~----~ 112 (418)
T d2r5ea1 39 HAPKYALNALAAAANSPD--PLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYATIQGHV----D 112 (418)
T ss_dssp CCCHHHHHHHHHHHTCSC--GGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHC----C
T ss_pred CCCHHHHHHHHHHHhCCC--ccCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCccceEEEcCCCchhhhhhhhhcc----c
Confidence 467889999999886421 10001111111223444444555555565 4 3689999999999999999998 8
Q ss_pred CCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCC----------CccChHHHHhhccCCceEEEEecccCccccccc
Q psy15216 85 RGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN----------GLITLSQLEEKICSDTILVSVMLVNNEIGVIQP 154 (2602)
Q Consensus 85 ~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~----------~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~ 154 (2602)
+||.|++++|.|+++...+... |.+++.++++++ +.++++++.+...++++++++++||||||.+++
T Consensus 113 ~gd~vlv~~P~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~p~NPtG~~~s 189 (418)
T d2r5ea1 113 EGDEVIIIEPFFDCYEPMVKAA---GGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEKTKMIIINTPHNPLGKVMD 189 (418)
T ss_dssp TTCEEEEEESCCTTHHHHHHHT---TCEEEEEECEESCCSSCEEGGGEECCHHHHHHHCCTTEEEEEEESSCTTTCCCCC
T ss_pred cccceeccccccchhhHHHHHc---CCeEEEEEecccccccchhhhhhhhhHHHHhhhhhccccceecCCcCcccccccc
Confidence 9999999999999998888776 999999887542 347889999999999999999999999999999
Q ss_pred H---HHHHHHHHhcCCEEEEeccccccccc-------ccCCC-CCccEEEeccccccCCCC--cEEEEEecCCCCcccce
Q psy15216 155 I---LEIGELCRSKGVIFHCDAAQAVGKID-------INIQN-YKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQ 221 (2602)
Q Consensus 155 l---~~I~~la~~~g~~livD~a~a~g~~~-------~dl~~-~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~ 221 (2602)
. ++|+++|++|++++|.|++|...... ..+.. ...-+++.|++|.++++| +||+++++++++.+...
T Consensus 190 ~e~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~pGlRiG~~~~~~~~i~~~~~~ 269 (418)
T d2r5ea1 190 RAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTGWKIGWAYGPEALLKNLQMV 269 (418)
T ss_dssp HHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCGGGCCEEEESCHHHHHHHHHH
T ss_pred HHHHHHHhhhhhcCCeeeecccchhhhccCCCccccccccccccceeeeeecCCccccCCCcccccccccchhhhhhhhc
Confidence 4 55788899999999999998643211 11211 223477889999888777 89999998877666543
Q ss_pred ecCCCccccccccCcchhHHHHHHHHHHH-------HHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceE
Q psy15216 222 IHGGGHEYGLRSGTLATHQIVGMGEAFRL-------ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNL 294 (2602)
Q Consensus 222 ~~g~~~~~~~~~gt~~~~~~~al~~al~~-------~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~ 294 (2602)
.. ....++++..+.+ +...+.. ...++.+.+++++..++++.+.|.+ .|+.+..|... ..+
T Consensus 270 ~~------~~~~~~~~~~q~a-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~--~g~~~~~P~gg---~f~ 337 (418)
T d2r5ea1 270 HQ------NCVYTCATPIQEA-IAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAE--VGMNPTVPQGG---YFM 337 (418)
T ss_dssp HT------TTTCSCCHHHHHH-HHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHH--TTCEEEECSBS---SEE
T ss_pred cc------ccccccccchhhh-ccccccccccccccchhhHHHHHHHHHHhhhhHHhhHhh--cCCcccCCCce---eEE
Confidence 31 1112333333333 3233321 1234678888889999999999988 47776654332 233
Q ss_pred EEEEcc-------------cChhHHHHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHH
Q psy15216 295 NISFNF-------------IEGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKE 358 (2602)
Q Consensus 295 ~~~~~~-------------~~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~ed 358 (2602)
++.++. .+..++...| .||.+.||..|.... ......+++|||+. .++++
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~------------~~~~g~~~iRis~~--~~~e~ 403 (418)
T d2r5ea1 338 VADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEP------------NKHLGEDFVRYCFF--KKDEN 403 (418)
T ss_dssp EEECGGGSTTCCGGGCCCSSHHHHHHHHHHHHHSEECBCGGGGSCGG------------GHHHHTTEEEEECC--SCHHH
T ss_pred EEEcccccccccchhcccccCHHHHHHHHHHHCCEEEeCchhhCCCC------------CccCCCCEEEEEec--CCHHH
Confidence 344432 1233455555 499999998875420 00112379999996 47899
Q ss_pred HHHHHHHHHh
Q psy15216 359 IDFTIKLLKM 368 (2602)
Q Consensus 359 id~li~~L~~ 368 (2602)
++..+++|++
T Consensus 404 l~~a~~rl~~ 413 (418)
T d2r5ea1 404 LQKAAEILRK 413 (418)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999986
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Probab=99.84 E-value=2.3e-20 Score=238.46 Aligned_cols=312 Identities=14% Similarity=0.125 Sum_probs=219.0
Q ss_pred CCCHHHHHHHHHHHhhh-cCCCCCCCcchhhhHHHHHHHHHHHHHHHhCC--CCCcEEEeCCHHHHHHHHHHhccccccc
Q psy15216 8 PIDPRVVDKMIPYLRVQ-FGNPASRNHIYGWTAEKAIEKARNEVAQLIYA--DPREIIWTSGATESNNLAIKGAAHFYKK 84 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~-~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~--~~~~Iv~t~g~T~al~~~~~~l~~~~~~ 84 (2602)
++|+.+.+++.+.+... .+|+.. ....++.+.+.+++.+..|. +++++++|+|+++|+..++.++. +
T Consensus 41 ~~p~~i~~~~~~~~~~~~~~Y~~~------~G~~~lR~aia~~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~----~ 110 (375)
T d1o4sa_ 41 PTPEPVVEEAVRFLQKGEVKYTDP------RGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMALL----D 110 (375)
T ss_dssp CCCHHHHHHHHHHHTTCCCCCCCT------TCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHHHHHHHHC----C
T ss_pred CCCHHHHHHHHHHHhcCCcCCCCC------cCCHHHHHHHHhhhhhccccccccccccccCcHHHHHHHHHHHHh----C
Confidence 57889999999887642 223322 11123344444444444454 67899999999999999999998 8
Q ss_pred CCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCC--CCccChHHHHhhccCCceEEEEecccCccccccc---HHHHH
Q psy15216 85 RGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIG 159 (2602)
Q Consensus 85 ~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~---l~~I~ 159 (2602)
+||.|++++|.|+.+....... |.....++.++ .+.++.+.++....++++++++++|+||||.+++ +++|+
T Consensus 111 ~gd~vlv~~P~y~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~nP~NPTG~~~s~~~~~~i~ 187 (375)
T d1o4sa_ 111 PGDEVIVFSPVWVSYIPQIILA---GGTVNVVETFMSKNFQPSLEEVEGLLVGKTKAVLINSPNNPTGVVYRREFLEGLV 187 (375)
T ss_dssp TTCEEEEEESCCTTHHHHHHHT---TCEEEEEECCGGGTTCCCHHHHHHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred CCCEEEEccCccccchhhhhcc---ccccccccccccccccchhHHHHHhhccCccEEEEeCCCCCccCCCCHHHHHHHH
Confidence 9999999999999987766655 77777777654 5678999999999999999999999999999998 55678
Q ss_pred HHHHhcCCEEEEeccccccccc------cc-CCCCCccEEEeccccccCCCC--cEEEEEecCCCCcccceecCCCcccc
Q psy15216 160 ELCRSKGVIFHCDAAQAVGKID------IN-IQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYG 230 (2602)
Q Consensus 160 ~la~~~g~~livD~a~a~g~~~------~d-l~~~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~ 230 (2602)
++|++|+++||.|+++...... +. ....+.-+++.|++|.+|++| +||++.+++.++.+.....
T Consensus 188 ~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~G~R~G~~~~~~~~~~~~~~~~~------- 260 (375)
T d1o4sa_ 188 RLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRVGYLISSEKVATAVSKIQS------- 260 (375)
T ss_dssp HHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGGGCCEEEECCHHHHHHHHHHHH-------
T ss_pred HhHHHcCCceehHhhhccccccccccccccccCCCCCEEEEeechhhccCCccccccccccccchhhhhhhhc-------
Confidence 8899999999999987643221 11 122345588899999988888 8999998876655432221
Q ss_pred ccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcccChhHHHHHh
Q psy15216 231 LRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI 310 (2602)
Q Consensus 231 ~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L 310 (2602)
..+......... .+............+.+.+.++.+.+.|.+ .|+.+..|... .+.++.++. +..++...|
T Consensus 261 --~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~l~~--~g~~~~~p~gg---~f~~~~~~~-~~~~~~~~l 331 (375)
T d1o4sa_ 261 --HTTSCINTVAQY-AALKALEVDNSYMVQTFKERKNFVVERLKK--MGVKFVEPEGA---FYLFFKVRG-DDVKFCERL 331 (375)
T ss_dssp --HHTCSCCHHHHH-HHHHHTTCCCHHHHHHHHHHHHHHHHHHHH--TTCCCCCCSBS---SEEEEECSS-CHHHHHHHH
T ss_pred --cccccccccchh-hhhhhcccchhhhHHHHHHHHHHHHHHHHh--cCceEecCCcc---EEEEEECCC-CHHHHHHHH
Confidence 111111122111 222233344566677788888888999877 57766544321 223333443 444555554
Q ss_pred ---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 311 ---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 311 ---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
+||.+.+|..|..+ +++||+++ +++++++.++++|++.
T Consensus 332 l~~~gV~v~pG~~F~~~-------------------g~iRis~~--~~~e~l~~al~rl~~~ 372 (375)
T d1o4sa_ 332 LEEKKVALVPGSAFLKP-------------------GFVRLSFA--TSIERLTEALDRIEDF 372 (375)
T ss_dssp HHHHCEECEEGGGGTCT-------------------TEEEEECC--SCHHHHHHHHHHHHHH
T ss_pred HHhCCEEEEEccccCCC-------------------CeEEEEEc--CCHHHHHHHHHHHHHH
Confidence 59999999887543 79999997 4889999999999863
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Probab=99.83 E-value=1.2e-19 Score=231.73 Aligned_cols=319 Identities=13% Similarity=0.066 Sum_probs=228.4
Q ss_pred CCCHHHHHHHHHHHhhhc-CCCCCCCcchhhhHHHHHHHHHHHHHHHhCC--CCC-cEEEeCCHHHHHHHHHHhcccccc
Q psy15216 8 PIDPRVVDKMIPYLRVQF-GNPASRNHIYGWTAEKAIEKARNEVAQLIYA--DPR-EIIWTSGATESNNLAIKGAAHFYK 83 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~-~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~--~~~-~Iv~t~g~T~al~~~~~~l~~~~~ 83 (2602)
++|+.+.+++.+++.... +|+. .....++.+.+.+++.+.+|. +++ +|++|+|+++|+.+++.++.
T Consensus 39 ~~p~~i~~a~~~~~~~~~~~Y~~------~~G~~~LReaia~~~~~~~g~~~~~~~~I~vt~G~~~al~~~~~~l~---- 108 (382)
T d1u08a_ 39 DGPRYLQERLAHHVAQGANQYAP------MTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITALV---- 108 (382)
T ss_dssp CCCHHHHHHHHHHHHTTCCSCCC------TTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHHHHHHHC----
T ss_pred CCCHHHHHHHHHHHhcCCCCCCC------CcCCHHHHHHHHHHHHHHhCCCCCCCceEEeccchHHHHHHHHhhcc----
Confidence 578888899998886522 2222 111223444444444445565 444 59999999999999999998
Q ss_pred cCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCC-CCccChHHHHhhccCCceEEEEecccCcccccccHH---HHH
Q psy15216 84 KRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPIL---EIG 159 (2602)
Q Consensus 84 ~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~-~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~---~I~ 159 (2602)
++||.|++++|.|+.+....... |+.+..++.+. .+.+|++++++.++++++++++++||||||++++.+ +|+
T Consensus 109 ~~gd~vl~~~p~y~~~~~~~~~~---g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPtG~v~~~~~~~~l~ 185 (382)
T d1u08a_ 109 RNGDEVICFDPSYDSYAPAIALS---GGIVKRMALQPPHFRVDWQEFAALLSERTRLVILNTPHNPSATVWQQADFAALW 185 (382)
T ss_dssp CTTCEEEEEESCCTTHHHHHHHT---TCEEEEEECCTTTCCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred cccceEEEecccccchhhhhhhc---cccceecccccccccCCHHHHhhhhccCccEEEECCCCcccccccccccchhhh
Confidence 89999999999999987766655 88887777665 456899999999999999999999999999999954 566
Q ss_pred HHHHhcCCEEEEeccccccccc----ccCC----CCCccEEEeccccccCCCC--cEEEEEecCCCCcccceecCCCccc
Q psy15216 160 ELCRSKGVIFHCDAAQAVGKID----INIQ----NYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEY 229 (2602)
Q Consensus 160 ~la~~~g~~livD~a~a~g~~~----~dl~----~~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~ 229 (2602)
++|++++++++.|+.+...... .... ....-+++.|++|.++.+| +||+++++++++.+....
T Consensus 186 ~~~~~~~~~ii~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~pG~RiG~~v~~~~~~~~~~~~~------- 258 (382)
T d1u08a_ 186 QAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVGYCVAPAPISAEIRKVH------- 258 (382)
T ss_dssp HHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGCCEEEECCHHHHHHHHHHH-------
T ss_pred hhhccccceeeeecchhhccccccccccccccccccCcEEEEeeccccccCCcccchhhhccchhHHHHHhhh-------
Confidence 7778899999999887542211 1110 0112488889999888777 899999887766654332
Q ss_pred cccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc---cChhHH
Q psy15216 230 GLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF---IEGESL 306 (2602)
Q Consensus 230 ~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~---~~~~~~ 306 (2602)
......++.+...++..+++....+..+.+.++++.++.+.+.+.. .++.+..+... ..+++.++. .+..++
T Consensus 259 ~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~~p~gg---~~~~~~~~~~~~~d~~e~ 333 (382)
T d1u08a_ 259 QYLTFSVNTPAQLALADMLRAEPEHYLALPDFYRQKRDILVNALNE--SRLEILPCEGT---YFLLVDYSAVSTLDDVEF 333 (382)
T ss_dssp HHHTSSCCHHHHHHHHHHHHHCTHHHHTHHHHHHHHHHHHHHHTTS--SSCEECCCCBS---SEEEEECTTTCCSCHHHH
T ss_pred cccccccccccccccccccccchHHHHHHHHHHHhhhhhhhhhhcc--CCcEEecCCce---EEEEEecCCCCCCCHHHH
Confidence 1112345555555565777644566788888899999999988865 67877654332 334455553 456667
Q ss_pred HHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 307 LMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 307 ~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
...| +||.+.||..|... ...++++|||++ +++++++..+++|++
T Consensus 334 ~~~ll~e~gV~v~PG~~F~~~---------------~~~~~~~Ris~~--~~~e~l~~al~RL~~ 381 (382)
T d1u08a_ 334 CQWLTQEHGVAAIPLSVFCAD---------------PFPHKLIRLCFA--KKESTLLAAAERLRQ 381 (382)
T ss_dssp HHHHHHHSCEECEEGGGGCSS---------------CCCSCEEEEECC--SCHHHHHHHHHHHTT
T ss_pred HHHHHHHCCEEEEcchhhCCC---------------CCCCCEEEEEEe--CCHHHHHHHHHHHhC
Confidence 6665 69999999887542 112479999996 478999999999885
|
| >d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Thermotoga maritima [TaxId: 2336]
Probab=99.83 E-value=5.8e-20 Score=230.07 Aligned_cols=296 Identities=16% Similarity=0.087 Sum_probs=215.9
Q ss_pred CCCCCC-CCCHHHHHHHHHHHhhh--cCCCCCCCcchhhhHHHHHHHHHHHHHHHhC---CCCCcEEEeCCHHHHHHHHH
Q psy15216 2 DYSATT-PIDPRVVDKMIPYLRVQ--FGNPASRNHIYGWTAEKAIEKARNEVAQLIY---ADPREIIWTSGATESNNLAI 75 (2602)
Q Consensus 2 d~a~~~-~~p~~v~~a~~~~l~~~--~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g---~~~~~Iv~t~g~T~al~~~~ 75 (2602)
+.+.+. |+|+.+.+++.+.+... ..+|.. ...++|+++|++++ +++++|++|+|+++++.+++
T Consensus 25 ~~~enp~~~p~~i~~~~~~~~~~~~~~~yp~~-----------g~~~Lr~aia~~~~~~~v~~d~I~it~G~~~~l~~l~ 93 (334)
T d2f8ja1 25 ALNENPFPFPEDLVDEVFRRLNSDALRIYYDS-----------PDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVMM 93 (334)
T ss_dssp SSCCCSSCCCHHHHHHHHHHCCTTGGGSCCCS-----------SCHHHHHHHHHHHTCSSCCGGGEEEEEHHHHHHHHHH
T ss_pred ECCCCCCCCCHHHHHHHHHHhhcchhcCCCCC-----------CcHHHHHHHHHHhcccCCCcceEEecCcchhHHHHHh
Confidence 334444 77889999988887542 123332 23568899999886 47789999999999988765
Q ss_pred HhcccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccH
Q psy15216 76 KGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPI 155 (2602)
Q Consensus 76 ~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l 155 (2602)
. +||+|++++|.|+.+...+..+ |++++.++.++++..+ +...++++++++++|+||||.+++.
T Consensus 94 ~--------~~d~v~i~~P~y~~~~~~~~~~---g~~~v~v~~~~~~~~~-----~~~~~~~~~l~l~nP~NPtG~~~s~ 157 (334)
T d2f8ja1 94 L--------MFDRSVFFPPTYSCYRIFAKAV---GAKFLEVPLTKDLRIP-----EVNVGEGDVVFIPNPNNPTGHVFER 157 (334)
T ss_dssp H--------HSSEEEECSSCCHHHHHHHHHH---TCCEEECCCCTTSCCC-----CCCCCTTEEEEEESSCTTTCCCCCH
T ss_pred h--------hccccccccccccccccchhcc---CCcccccccccccccc-----ccccccceEEEecccccccceeecH
Confidence 3 4689999999999998888887 9999999988766443 3345789999999999999999999
Q ss_pred HHHHHHHHhcCCEEEEecccccccc---cccCCCCCccEEEeccccccCCCC--cEEEEEecCCCCcccceecCCCcccc
Q psy15216 156 LEIGELCRSKGVIFHCDAAQAVGKI---DINIQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYG 230 (2602)
Q Consensus 156 ~~I~~la~~~g~~livD~a~a~g~~---~~dl~~~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~ 230 (2602)
++|.+++ ++++++|+|+++..... .......+.-+++.|++|.+|.+| +||++++++++..+.....
T Consensus 158 ~~l~~~~-~~~~~ii~Dd~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~~~~~~~~i~~l~~~~~------- 229 (334)
T d2f8ja1 158 EEIERIL-KTGAFVALDEAYYEFHGESYVDFLKKYENLAVIRTFSKAFSLAAQRVGYVVASEKFIDAYNRVRL------- 229 (334)
T ss_dssp HHHHHHH-TTTCEEEEECTTGGGTCCCCGGGGGTCSSEEEEEESTTTSSCTTTCEEEEEECHHHHHHHHHHSC-------
T ss_pred HHhhccc-cceeEEeecccchhhcccccccccccCceEEEEecCccccchhhhhhhhcccchHHHHHHHHhhc-------
Confidence 9887764 67999999988643221 111122234588889999888787 8999999888777654431
Q ss_pred ccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcccChhHHHHHh
Q psy15216 231 LRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI 310 (2602)
Q Consensus 231 ~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L 310 (2602)
....+.....++.+.+.. .++.++..+++.+.++++.+.|.+ .|+++..+.. .++.+.++..+..++.+.|
T Consensus 230 --~~~~s~~~~~~a~~~l~~-~~~~~~~~~~~~~~r~~l~~~L~~--~g~~~~~~~g----~f~~~~~~~~~~~~~~~~L 300 (334)
T d2f8ja1 230 --PFNVSYVSQMFAKVALDH-REIFEERTKFIVEERERMKSALRE--MGYRITDSRG----NFVFVFMEKEEKERLLEHL 300 (334)
T ss_dssp --TTCSCHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHH--HTCEECCCCS----SEEEEECCHHHHHHHHHHH
T ss_pred --ccccchhhhhhccccccc-ccchhhHHHHHHHHHHHHHHHHHH--CCCeECCCCc----eEEEEECCCCCHHHHHHHH
Confidence 223444444444445542 355677788888999999999988 3787764322 2344555555667777776
Q ss_pred --CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 311 --KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 311 --~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
+||.+++. +++||||++ +.+|+++++++|++
T Consensus 301 ~~~GI~vr~~------------------------~~~vRis~g---~~ee~~~l~~~l~~ 333 (334)
T d2f8ja1 301 RTKNVAVRSF------------------------REGVRITIG---KREENDMILRELEV 333 (334)
T ss_dssp HHTTEECEEE------------------------TTEEEEECC---CHHHHHHHHHHHHH
T ss_pred HHCCCEECCC------------------------CCeEEEEcC---CHHHHHHHHHHHhc
Confidence 89988631 278999998 88999999999984
|
| >d1r9pa_ d.224.1.2 (A:) NifU-like protein HI0377 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: SufE/NifU superfamily: SufE/NifU family: NifU/IscU domain domain: NifU-like protein HI0377 species: Haemophilus influenzae [TaxId: 727]
Probab=99.83 E-value=1.1e-21 Score=204.96 Aligned_cols=96 Identities=79% Similarity=1.266 Sum_probs=90.0
Q ss_pred hhhhHhhhhcccCCCCCCCCCCCCCcceeeeeCCCCcccEEEEEEEEcCCCceEeeeeeccccchhHhhHHHHHHHHcCC
Q psy15216 373 MSYSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKTYGCGSAIASSSLVTEWVKGK 452 (2602)
Q Consensus 373 ~~y~~~~~~hy~~p~n~g~~~~~~~~~~~~~~~~~~cgd~~~~~~~~~~~~~i~~~~~~~~gc~~~~a~~s~~~~~~~g~ 452 (2602)
++|+++++|||++|+|.|.|+++|..+..+..+||+|||.|+|+++|+++++|+|++|+++||++++||||+++++++||
T Consensus 1 m~Y~e~Ildh~~~Prn~g~l~~~d~~~~~~~~~np~CGD~v~i~l~i~~~~~I~di~f~~~GCais~Asas~~~e~i~Gk 80 (134)
T d1r9pa_ 1 MAYSEKVIDHYENPRNVGSLDKKDSNVGTGMVGAPACGDVMQLQIKVDDNGIIEDAKFKTYGCGSAIASSSLITEWVKGK 80 (134)
T ss_dssp CCSCCSCCCSCSCCCCCSSSSSCCSSEEEEEEEETTTTEEEEEEEEECSSSBEEEEEEEEESSSSHHHHHHHHHHHSSSS
T ss_pred CCcHHHHHHHhhCcCCCCCCCCCCcchhhhccCCCCcccEEEEEEEEcCCceEEEEEEEeccCcccHhHHHHHHHHHHhC
Confidence 47999999999999999999999987778888999999999999999877899999999999999999999999999999
Q ss_pred Chhhhhhccccchhhh
Q psy15216 453 TLDEAMSIKNTDIAEE 468 (2602)
Q Consensus 453 ~~~e~~~i~~~~i~~~ 468 (2602)
|++||..|++..+.+.
T Consensus 81 t~~ea~~i~~~~i~e~ 96 (134)
T d1r9pa_ 81 SLEEAGAIKNSQIAEE 96 (134)
T ss_dssp BHHHHTTSHHHHHHHH
T ss_pred CHHHHHHhcchHHHHh
Confidence 9999999998777654
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Probab=99.83 E-value=1.2e-19 Score=231.78 Aligned_cols=328 Identities=14% Similarity=0.079 Sum_probs=234.5
Q ss_pred CCccccceeeeeceeeeccCCCCCCCHHHHHHHHHHHhhc-cCCCCCccchhHHHHHHHHHHHHHHHHHHh----CC--C
Q psy15216 1381 FKAESSGIVMRPYTNIVFKDATTPIDPRVVDKMIPYLRVQ-FGNPASRNHIYGWTAEKAIEKARNEVAQLI----YA--D 1453 (2602)
Q Consensus 1381 ~~~~~~ei~~iP~~~v~L~~~~~~~~~~v~eal~~~l~~~-~~np~~~~~~~~~~~~~~~~~lr~~ia~~~----g~--~ 1453 (2602)
.++.+..++ .|+ .++|+.+.+++.+.++.. .+|+.. ....++|+.+++++ |. +
T Consensus 26 ~~~i~l~~G-~Pd---------~~~p~~i~~a~~~~~~~~~~~Y~~~----------~G~~~LReaia~~~~~~~g~~~~ 85 (382)
T d1u08a_ 26 HQAINLSQG-FPD---------FDGPRYLQERLAHHVAQGANQYAPM----------TGVQALREAIAQKTERLYGYQPD 85 (382)
T ss_dssp TTCEECCCS-SCS---------SCCCHHHHHHHHHHHHTTCCSCCCT----------TCCHHHHHHHHHHHHHHHSCCCC
T ss_pred CCCEEccCC-CCC---------CCCCHHHHHHHHHHHhcCCCCCCCC----------cCCHHHHHHHHHHHHHHhCCCCC
Confidence 455666666 353 366888999999888763 233322 11345666666654 65 4
Q ss_pred CC-cEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCC-CCCcChhHHHhhccC
Q psy15216 1454 PR-EIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NGLITLSQLEEKICS 1531 (2602)
Q Consensus 1454 ~~-~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~-~~~id~d~l~~~i~~ 1531 (2602)
++ +|++|+|+++|+.++++++. ++||.|++++|.|+.+....... |..+..++.+. .+.+|++++++++++
T Consensus 86 ~~~~I~vt~G~~~al~~~~~~l~----~~gd~vl~~~p~y~~~~~~~~~~---g~~~~~~~~~~~~~~~d~~~l~~~~~~ 158 (382)
T d1u08a_ 86 ADSDITVTAGATEALYAAITALV----RNGDEVICFDPSYDSYAPAIALS---GGIVKRMALQPPHFRVDWQEFAALLSE 158 (382)
T ss_dssp TTTTEEEESSHHHHHHHHHHHHC----CTTCEEEEEESCCTTHHHHHHHT---TCEEEEEECCTTTCCCCHHHHHHHCCT
T ss_pred CCceEEeccchHHHHHHHHhhcc----cccceEEEecccccchhhhhhhc---cccceecccccccccCCHHHHhhhhcc
Confidence 55 59999999999999999998 89999999999999987766555 88887777765 456899999999999
Q ss_pred CceEEEEeccccccccccC---hHHHHHHhhhcCCEEEEecccccCccc----ccCCC----CCccEEEEccccccCCCc
Q psy15216 1532 DTILVSVMLVNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQAVGKID----INIQN----YKVDLMSFSAHKIYGPKG 1600 (2602)
Q Consensus 1532 ~t~lv~l~~~~n~tG~~~~---l~~I~~ia~~~gi~vivD~a~~~g~~~----~~l~~----~~~D~~v~S~~K~~gp~G 1600 (2602)
+++++++++||||||.+++ +++|.++|++++++++.|+.+...... ..... ...-+++.|++|.++.+|
T Consensus 159 ~~~~i~l~~P~NPtG~v~~~~~~~~l~~~~~~~~~~ii~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~pG 238 (382)
T d1u08a_ 159 RTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTG 238 (382)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGG
T ss_pred CccEEEECCCCcccccccccccchhhhhhhccccceeeeecchhhccccccccccccccccccCcEEEEeeccccccCCc
Confidence 9999999999999999999 567778888999999999887542211 11100 112478889999777777
Q ss_pred --eEEEEEecCCCCccccccccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEE
Q psy15216 1601 --IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYI 1678 (2602)
Q Consensus 1601 --~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i 1678 (2602)
+||+++++++++.+.... .....+.+.+.+.++..++......+...+.++.+.++.+.+.+.. .++.+
T Consensus 239 ~RiG~~v~~~~~~~~~~~~~-------~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~ 309 (382)
T d1u08a_ 239 WKVGYCVAPAPISAEIRKVH-------QYLTFSVNTPAQLALADMLRAEPEHYLALPDFYRQKRDILVNALNE--SRLEI 309 (382)
T ss_dssp GCCEEEECCHHHHHHHHHHH-------HHHTSSCCHHHHHHHHHHHHHCTHHHHTHHHHHHHHHHHHHHHTTS--SSCEE
T ss_pred ccchhhhccchhHHHHHhhh-------cccccccccccccccccccccchHHHHHHHHHHHhhhhhhhhhhcc--CCcEE
Confidence 899999887666554322 1112345555555666777754556778888889999999988865 67777
Q ss_pred eCCCCCCCCceEEEEEec---CCcHHHHHhc---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCH
Q psy15216 1679 NGDMNNRIPHNLNISFNF---IEGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTE 1752 (2602)
Q Consensus 1679 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~ 1752 (2602)
..+... ....+.++. .+..++..+| +||.+.||..|... ....+++|||+. +++
T Consensus 310 ~~p~gg---~~~~~~~~~~~~~d~~e~~~~ll~e~gV~v~PG~~F~~~---------------~~~~~~~Ris~~--~~~ 369 (382)
T d1u08a_ 310 LPCEGT---YFLLVDYSAVSTLDDVEFCQWLTQEHGVAAIPLSVFCAD---------------PFPHKLIRLCFA--KKE 369 (382)
T ss_dssp CCCCBS---SEEEEECTTTCCSCHHHHHHHHHHHSCEECEEGGGGCSS---------------CCCSCEEEEECC--SCH
T ss_pred ecCCce---EEEEEecCCCCCCCHHHHHHHHHHHCCEEEEcchhhCCC---------------CCCCCEEEEEEe--CCH
Confidence 643222 122233442 3456666655 69999999988642 112479999996 478
Q ss_pred HHHHHHHHHHHH
Q psy15216 1753 KEIDFTIKLLKM 1764 (2602)
Q Consensus 1753 edid~li~~L~~ 1764 (2602)
++++.++++|++
T Consensus 370 e~l~~al~RL~~ 381 (382)
T d1u08a_ 370 STLLAAAERLRQ 381 (382)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhC
Confidence 999999999885
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Probab=99.83 E-value=3.8e-20 Score=239.57 Aligned_cols=318 Identities=13% Similarity=0.121 Sum_probs=222.4
Q ss_pred CCCHHHHHHHHHHHhhc----cCCCCCccchhHHHHHHHHHHHHHHHHHH----hCC--C-CCcEEEeCCHHHHHHHHHH
Q psy15216 1404 PIDPRVVDKMIPYLRVQ----FGNPASRNHIYGWTAEKAIEKARNEVAQL----IYA--D-PREIIWTSGATESNNLAIK 1472 (2602)
Q Consensus 1404 ~~~~~v~eal~~~l~~~----~~np~~~~~~~~~~~~~~~~~lr~~ia~~----~g~--~-~~~iv~t~gaT~al~~al~ 1472 (2602)
+.|+.+++++.+.+.+. .+|+.. ....++|+++|++ +|. + .++|++|+|+++|+..+++
T Consensus 39 ~~p~~i~eal~~a~~~~~~~~~~Y~~~----------~G~~~lReaiA~~~~~~~g~~~~p~~~I~it~G~~~al~~~~~ 108 (418)
T d2r5ea1 39 HAPKYALNALAAAANSPDPLANQYTRG----------FGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYATIQ 108 (418)
T ss_dssp CCCHHHHHHHHHHHTCSCGGGGSCCCT----------TCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCccCcCCCCC----------CCCHHHHHHHHHHHHHHhCCCCCccceEEEcCCCchhhhhhhh
Confidence 56788999999988642 122221 1134556665555 454 4 3689999999999999999
Q ss_pred hhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCC----------CCcChhHHHhhccCCceEEEEeccc
Q psy15216 1473 GAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN----------GLITLSQLEEKICSDTILVSVMLVN 1542 (2602)
Q Consensus 1473 ~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~----------~~id~d~l~~~i~~~t~lv~l~~~~ 1542 (2602)
++. ++||.|++++|.|+.+....... |.+++.++.+++ +.++.+++.+...++++++++++||
T Consensus 109 ~l~----~~gd~vlv~~P~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~p~ 181 (418)
T d2r5ea1 109 GHV----DEGDEVIIIEPFFDCYEPMVKAA---GGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEKTKMIIINTPH 181 (418)
T ss_dssp HHC----CTTCEEEEEESCCTTHHHHHHHT---TCEEEEEECEESCCSSCEEGGGEECCHHHHHHHCCTTEEEEEEESSC
T ss_pred hcc----ccccceeccccccchhhHHHHHc---CCeEEEEEecccccccchhhhhhhhhHHHHhhhhhccccceecCCcC
Confidence 998 89999999999999998877776 999999987542 3468899999999999999999999
Q ss_pred cccccccC---hHHHHHHhhhcCCEEEEecccccCccc-------ccCCCC-CccEEEEccccccCCCc--eEEEEEecC
Q psy15216 1543 NEIGVIQP---ILEIGELCRSKGVIFHCDAAQAVGKID-------INIQNY-KVDLMSFSAHKIYGPKG--IGALYIRRN 1609 (2602)
Q Consensus 1543 n~tG~~~~---l~~I~~ia~~~gi~vivD~a~~~g~~~-------~~l~~~-~~D~~v~S~~K~~gp~G--~G~l~~~~~ 1609 (2602)
||||.+++ +++|+++|++||+++|.|++|...... ..+... ..-+++.|++|.++++| +||++++++
T Consensus 182 NPtG~~~s~e~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~pGlRiG~~~~~~~ 261 (418)
T d2r5ea1 182 NPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTGWKIGWAYGPEA 261 (418)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCGGGCCEEEESCHH
T ss_pred ccccccccHHHHHHHhhhhhcCCeeeecccchhhhccCCCccccccccccccceeeeeecCCccccCCCcccccccccch
Confidence 99999999 667888999999999999998643211 112222 23477789999888777 899999887
Q ss_pred CCCccccccccCCccccCCCCCcchhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCC
Q psy15216 1610 PRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRL-------ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDM 1682 (2602)
Q Consensus 1610 ~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~-------~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~ 1682 (2602)
+++.+..... ....++++..+ .++...+.. ....+.+.+++++..++++.+.|.+ .|+.+..|.
T Consensus 262 ~i~~~~~~~~------~~~~~~~~~~q-~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~--~g~~~~~P~ 332 (418)
T d2r5ea1 262 LLKNLQMVHQ------NCVYTCATPIQ-EAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAE--VGMNPTVPQ 332 (418)
T ss_dssp HHHHHHHHHT------TTTCSCCHHHH-HHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHH--TTCEEEECS
T ss_pred hhhhhhhccc------ccccccccchh-hhccccccccccccccchhhHHHHHHHHHHhhhhHHhhHhh--cCCcccCCC
Confidence 7666544321 11122333333 333333331 1234678888899999999999988 377665432
Q ss_pred CCCCCceEEEEEec-------------CCcHHHHHhc---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEec
Q psy15216 1683 NNRIPHNLNISFNF-------------IEGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTI 1746 (2602)
Q Consensus 1683 ~~~~~~~~~~~~~~-------------~~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~ 1746 (2602)
.. ....+.++. .+..++...| +||.+.||..|.... ......+++|||+
T Consensus 333 gg---~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~------------~~~~g~~~iRis~ 397 (418)
T d2r5ea1 333 GG---YFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEP------------NKHLGEDFVRYCF 397 (418)
T ss_dssp BS---SEEEEECGGGSTTCCGGGCCCSSHHHHHHHHHHHHHSEECBCGGGGSCGG------------GHHHHTTEEEEEC
T ss_pred ce---eEEEEEcccccccccchhcccccCHHHHHHHHHHHCCEEEeCchhhCCCC------------CccCCCCEEEEEe
Confidence 22 112222221 1223455554 599999999886420 0011237999999
Q ss_pred CCCCCHHHHHHHHHHHHH
Q psy15216 1747 GRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1747 ~~~~t~edid~li~~L~~ 1764 (2602)
. .+++++++++++|++
T Consensus 398 ~--~~~e~l~~a~~rl~~ 413 (418)
T d2r5ea1 398 F--KKDENLQKAAEILRK 413 (418)
T ss_dssp C--SCHHHHHHHHHHHHH
T ss_pred c--CCHHHHHHHHHHHHH
Confidence 6 478999999999997
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Probab=99.83 E-value=1.1e-19 Score=233.32 Aligned_cols=321 Identities=12% Similarity=0.046 Sum_probs=221.6
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCC--CCCcEEEeCCHHHHHHHHHHhcccccccC
Q psy15216 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA--DPREIIWTSGATESNNLAIKGAAHFYKKR 85 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~--~~~~Iv~t~g~T~al~~~~~~l~~~~~~~ 85 (2602)
|+|+.+.+++.++......||.. ....++.+.+.+++.+.+|. ++++|++|+|+++++..++.++. ++
T Consensus 41 ~~p~~~~~al~~~~~~~~~Y~~~------~G~~~LR~aia~~~~~~~g~~~~~~~I~it~G~~~~l~~~~~~l~----~~ 110 (389)
T d2gb3a1 41 KTPEVFFERIYENKPEVVYYSHS------AGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVIA----NP 110 (389)
T ss_dssp CCCTHHHHHHHHTCCSSCCCCCT------TCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHHHHHHHHC----CT
T ss_pred CCCHHHHHHHHhcCCCCCCCCCC------cCCHHHHHHHHHHHHHhcCCCcccceEEecccccccccccccccc----cC
Confidence 46888888887765443334432 11122333344444444454 67899999999999999999998 89
Q ss_pred CCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCC-CCccChHHHHhhccCCceEEEEecccCccccccc---HHHHHHH
Q psy15216 86 GKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIGEL 161 (2602)
Q Consensus 86 gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~-~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~---l~~I~~l 161 (2602)
||.|+++.|.|+.+....... |+.++.++.+. ++..+.+.+...+.++++++++++||||||.+++ +++|.++
T Consensus 111 gd~V~i~~P~y~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~ 187 (389)
T d2gb3a1 111 GDEILVLEPFYANYNAFAKIA---GVKLIPVTRRMEEGFAIPQNLESFINERTKGIVLSNPCNPTGVVYGKDEMRYLVEI 187 (389)
T ss_dssp TCEEEEEESCCTHHHHHHHHH---TCEEEEEECCGGGTSCCCTTGGGGCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHH
T ss_pred CCeEEEeCCCCcccccccccc---CccccccccccccccchhhhhhhhcccCccEEEeCCCCccccccchHHHHHHHHhh
Confidence 999999999999988877776 88988888765 3455667788888999999999999999999998 6678889
Q ss_pred HHhcCCEEEEeccccccccc-----ccCCCCCccEEEeccccccCCCC--cEEEEEecCCCCcccceecCCCcccccccc
Q psy15216 162 CRSKGVIFHCDAAQAVGKID-----INIQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSG 234 (2602)
Q Consensus 162 a~~~g~~livD~a~a~g~~~-----~dl~~~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~g 234 (2602)
|++|++++|+|+++..-... .........+++.|++|.++.+| +||++++++.+....... .....
T Consensus 188 a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~v~~s~sK~~~~~GlRiG~~~~~~~~i~~~~~~~-------~~~~~ 260 (389)
T d2gb3a1 188 AERHGLFLIVDEVYSEIVFRGEFASALSIESDKVVVIDSVSKKFSACGARVGCLITRNEELISHAMKL-------AQGRL 260 (389)
T ss_dssp HHHTTCEEEEECTTTTCBCSSCCCCGGGSCCTTEEEEEESTTTTTCGGGCCEEEECSCHHHHHHHHHH-------HHHSC
T ss_pred cccCCEEEEEeccccccccccccccccccccccccccccccccccCcccceeeeeccchhHHHHHhhh-------hhccc
Confidence 99999999999998542211 11111234577889999887777 899998764332221111 01123
Q ss_pred CcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcccChhHHHHHh----
Q psy15216 235 TLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI---- 310 (2602)
Q Consensus 235 t~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L---- 310 (2602)
.++.....++..++.....+++..+++++++++.+.+.|.+ .++.....|.. ...+++.++..++.++...|
T Consensus 261 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~-~~~~~~~~p~~---g~~~~~~lp~~~~~~~~~~ll~e~ 336 (389)
T d2gb3a1 261 APPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEE-HGLKRFTKPSG---AFYITAELPVEDAEEFARWMLTDF 336 (389)
T ss_dssp CCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHH-TTCCCBCCCSB---SSEEEEECSSSCHHHHHHHHHHSC
T ss_pred cccccccccccccccccchhcccccccccccchhhhhhhhh-hccccccCCCc---eEEEEEeCCCCCHHHHHHHHHHhh
Confidence 44445555554555434456788888999999999999988 43333332222 23445556666777766554
Q ss_pred ----CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 311 ----KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 311 ----~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
+++.+.+|..|... +....+++||+++ .+++++++.+++|++
T Consensus 337 ~l~~~~v~v~pg~~f~~~--------------~~~~~~~iRis~~--~~~~~l~~a~~~L~~ 382 (389)
T d2gb3a1 337 NMDGETTMVAPLRGFYLT--------------PGLGKKEIRIACV--LEKDLLSRAIDVLME 382 (389)
T ss_dssp CBTTEEEECEEGGGGCSS--------------TTTTSSEEEEECC--SCHHHHHHHHHHHHH
T ss_pred hhhhCCEEEEeCcccccC--------------CCCCCCEEEEEEc--CCHHHHHHHHHHHHH
Confidence 36788888766432 1223489999986 578888888888875
|
| >d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]
Probab=99.82 E-value=7e-20 Score=232.68 Aligned_cols=332 Identities=12% Similarity=0.080 Sum_probs=224.9
Q ss_pred CCCCCCHHHHHHHHHHHhhhcCCCCCCCcc---hhhhHHHHHHHHHHHHHHHhCCCCC-cEEEeCCHHHHHHHHHHhccc
Q psy15216 5 ATTPIDPRVVDKMIPYLRVQFGNPASRNHI---YGWTAEKAIEKARNEVAQLIYADPR-EIIWTSGATESNNLAIKGAAH 80 (2602)
Q Consensus 5 ~~~~~p~~v~~a~~~~l~~~~~~p~~~~~~---~~~~~~~~~~~~r~~lA~~~g~~~~-~Iv~t~g~T~al~~~~~~l~~ 80 (2602)
|-++.|+.|+++|.+.+.+.. +.+.+.+. .+..+.+.++++|+.+++++|++.+ .|++++|++.+...++....
T Consensus 10 GP~~vp~~V~eam~~~~~~~~-~~~~~~~~~sHRs~ef~~~~~~~r~~l~~l~~~~~~~~i~~~~gs~t~~~ea~~~~l- 87 (361)
T d2c0ra1 10 GPAALPLEVLERAQAEFVDYQ-HTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQFAMIPMNF- 87 (361)
T ss_dssp SSCCCCHHHHHHHHHTSSSST-TSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHHHHHHHH-
T ss_pred CCcCCCHHHHHHHHHHHhhhc-ccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhcc-
Confidence 334779999999999876532 32222222 2466788999999999999999644 68887777766655544433
Q ss_pred ccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHH
Q psy15216 81 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGE 160 (2602)
Q Consensus 81 ~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~ 160 (2602)
+.+|+.+++....+. ...+...+++.|..++.+..++...++++.+++.+..++ +++++|.||...|+.+|.+
T Consensus 88 --~~~~~~~l~~~~g~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~tg~~~~~~~i~~ 160 (361)
T d2c0ra1 88 --LKEGQTANYVMTGSW-ASKALKEAKLIGDTHVAASSEASNYMTLPKLQEIQLQDN----AAYLHLTSNETIEGAQFKA 160 (361)
T ss_dssp --CCTTCEEEEEECSHH-HHHHHHHHHHHSCEEEEEECGGGTTCSCCCGGGCCCCTT----EEEEEEESEETTTTEECSS
T ss_pred --ccCCCceEEEeechh-hhhhhhhhhhcCceeeeeccccccccchhhhhhhcccCc----ceEEEEecccceecceEEE
Confidence 378888887643332 234455567789999999888888889999988887654 3456778999999999999
Q ss_pred HHHhcCCEEEEecccccccccccCCCCCccEEEeccccccCCCCcEEEEEecCCCCccccee-cCCCc----cccccccC
Q psy15216 161 LCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQI-HGGGH----EYGLRSGT 235 (2602)
Q Consensus 161 la~~~g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K~~Gp~G~G~l~~~~~~~~~l~~~~-~g~~~----~~~~~~gt 235 (2602)
+|+++|+++++|+++++|+.++++.+++ +.++|++|.+|++|.+++++..+......+.. ..+.. .......+
T Consensus 161 ~~~~~~al~~vDavss~g~~~id~~~~d--i~~~s~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (361)
T d2c0ra1 161 FPDTGSVPLIGDMSSDILSRPFDLNQFG--LVYAGAQKNLGPSGVTVVIVREDLVAESPKHLPTMLRYDTYVKNNSLYNT 238 (361)
T ss_dssp CCCCTTSCEEEECTTTTTSSCCCGGGCS--EEEEETTTTTCCSSCEEEEEEGGGSSSCCTTSCGGGCHHHHHHTTTCSSC
T ss_pred eeccCCceEEEEeeccccccccccccce--eEEEecccccccccCcEEEEEhHHhhhCcccccccccccccccccccccc
Confidence 9999999999999999999999998875 55567899777666555555443333322211 11111 01111233
Q ss_pred cchhHHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc-cChhHHHHHh--
Q psy15216 236 LATHQIVGMGEAFR--LARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGESLLMAI-- 310 (2602)
Q Consensus 236 ~~~~~~~al~~al~--~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~L-- 310 (2602)
++......+..+.. ...........+++..+..+................+..+++..+.+.++. .+..++...|
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rS~~~~~~~~~~~~~~~~~~~~L~~ 318 (361)
T d2c0ra1 239 PPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDVDSRSDMNITFRLASEELEKEFVKASEQ 318 (361)
T ss_dssp CCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSCGGGBCSSEEEEECSCHHHHHHHHHHHHH
T ss_pred ccceeeehhhhHHHhhhhccchHHHHHHHHHHHHHhhhhhhhcccccccCCChhhccceEEEEECCCcccHHHHHHHHHH
Confidence 33333333333333 222334566666666666666666553444455555666666666666653 4556677767
Q ss_pred CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 311 KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 311 ~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
+||.++.|..+. +.+|||+..+++.|||++|+++|++
T Consensus 319 ~GI~~~~G~~~~---------------------g~~RIs~~~~~~~edv~~Lv~~l~~ 355 (361)
T d2c0ra1 319 EGFVGLKGHRSV---------------------GGLRASIYNAVPYESCEALVQFMEH 355 (361)
T ss_dssp TTEESCBCCTTT---------------------CSEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEecCCCcC---------------------CeEEEEecCCCCHHHHHHHHHHHHH
Confidence 899998875442 3499999999999999999999995
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Probab=99.82 E-value=1.2e-19 Score=235.29 Aligned_cols=289 Identities=17% Similarity=0.177 Sum_probs=202.2
Q ss_pred HHHHHHHHHHHh----C----CCCCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEE
Q psy15216 43 IEKARNEVAQLI----Y----ADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVT 114 (2602)
Q Consensus 43 ~~~~r~~lA~~~----g----~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~ 114 (2602)
..++|+++|+++ | .++++|++|+|+++|+.+++.++. +|||.|++++|.|+++...+.. ..|++++
T Consensus 85 ~~~LR~aiA~~l~~~~~~~~~~~~e~Ivit~G~~~al~~~~~~l~----~~Gd~Vlv~~P~y~~~~~~~~~--~~g~~~v 158 (428)
T d1iaya_ 85 LPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLA----DPGDAFLVPSPYYPAFNRDLRW--RTGVQLI 158 (428)
T ss_dssp CHHHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHHC----CTTCEEEEESSCCTTHHHHTTT--TTCCEEE
T ss_pred hHHHHHHHHHHHHHHhCCCCCCChhhEEEcCCHHHHHHHHHHHhC----CCCCEEEEccCCchHHHHHHHH--hcCCeEE
Confidence 356677777765 3 367899999999999999999998 8999999999999998765542 3489999
Q ss_pred EeccCC--CCccChHHHHhhc------cCCceEEEEecccCccccccc---HHHHHHHHHhcCCEEEEeccccccccc--
Q psy15216 115 YLKPKN--NGLITLSQLEEKI------CSDTILVSVMLVNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQAVGKID-- 181 (2602)
Q Consensus 115 ~v~~~~--~~~ld~e~l~~~i------~~~tklv~i~~~~npTG~~~~---l~~I~~la~~~g~~livD~a~a~g~~~-- 181 (2602)
.++.+. ++.+|+++++.++ .++++++++++||||||.+++ +++|+++|++||++||+|++|+.....
T Consensus 159 ~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~vI~De~Y~~~~~~~~ 238 (428)
T d1iaya_ 159 PIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTP 238 (428)
T ss_dssp EECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSS
T ss_pred EeecccccccccccccccchhhhhhccCCCceEEEEccCCCcccccccccccchhheeeccCcEEEEecccccccccCcc
Confidence 998764 4678998886553 467899999999999999998 567888999999999999998642110
Q ss_pred --c------c-----CCCCCccEEEeccccccCCCC--cEEEEEecCC-CCcccceecCCCccccccccCcchhHHHHHH
Q psy15216 182 --I------N-----IQNYKVDLMSFSAHKIYGPKG--IGALYIRRNP-RTRIEAQIHGGGHEYGLRSGTLATHQIVGMG 245 (2602)
Q Consensus 182 --~------d-----l~~~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~-~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~ 245 (2602)
. + ....+..+++.|++|.|+.+| +||++..++. .+.+.... ..+..+.....++.
T Consensus 239 ~~~s~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~GlRiG~~~~~~~~l~~~~~~~~---------~~~~~~~~~~~~~~ 309 (428)
T d1iaya_ 239 QFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARKMS---------SFGLVSTQTQYFLA 309 (428)
T ss_dssp CCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGGGCEEEEEESCHHHHHHHHHHH---------TTSCCCHHHHHHHH
T ss_pred cccccccccchhhccccccceEEEEecCCCcccCCCcccccccccccchhhhhhhhh---------cccccccccccchh
Confidence 0 0 111123478889999888777 8999986543 33222111 12223333333333
Q ss_pred HHHH---HHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEccc-------ChhHHHHHh---CC
Q psy15216 246 EAFR---LARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI-------EGESLLMAI---KD 312 (2602)
Q Consensus 246 ~al~---~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~-------~~~~~~~~L---~g 312 (2602)
+.+. +...++++.++++.++++.+.+.|.. +|+.+..+.. ...+++.++.. +..++.+.| +|
T Consensus 310 a~l~~~~~~~~~~~~~~~~l~~r~~~~~~~L~~--~gi~~~~p~g---g~f~w~~l~~~~~~~~~~~~~~l~~~Ll~~~g 384 (428)
T d1iaya_ 310 AMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEV--VGIKCLKNNA---GLFCWMDLRPLLRESTFDSEMSLWRVIINDVK 384 (428)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTCCBCCCSS---SSEEEEECGGGCSSSSHHHHHHHHHHHHHTSC
T ss_pred hhhhhhccccccccccccccchhHHHHHHHHHh--CCCEEecCCc---ceEEEEECccccccCCCCCHHHHHHHHHHhCC
Confidence 3332 33455677788888888999999976 6877664432 22334444321 122344444 59
Q ss_pred eEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 313 IAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 313 I~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
|.+.||..|... .++++||+++ ..++++++..+++|++.
T Consensus 385 V~v~PG~~F~~~-----------------~~g~~Ris~a-~~~~~~l~~al~Rl~~~ 423 (428)
T d1iaya_ 385 LNVSPGSSFECQ-----------------EPGWFRVCFA-NMDDGTVDIALARIRRF 423 (428)
T ss_dssp EECEEGGGGTCS-----------------SSSEEEEECS-SSCHHHHHHHHHHHHHH
T ss_pred EEEEcchhcCCC-----------------CCCEEEEEeC-CCCHHHHHHHHHHHHHH
Confidence 999999887542 1389999986 34677899999999863
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=1.6e-19 Score=233.41 Aligned_cols=323 Identities=13% Similarity=0.069 Sum_probs=224.7
Q ss_pred CCCHHHHHHHHHHHhhh---cCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCC---CcEEEeCCHHHHHHHHHHhcccc
Q psy15216 8 PIDPRVVDKMIPYLRVQ---FGNPASRNHIYGWTAEKAIEKARNEVAQLIYADP---REIIWTSGATESNNLAIKGAAHF 81 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~---~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~---~~Iv~t~g~T~al~~~~~~l~~~ 81 (2602)
|+|+.+.+++.+++... ..|+.. ....++.+.+.+++.+.+|.+. ++|++|+|+++|+.++++++.
T Consensus 38 ~~p~~v~~a~~~al~~~~~~~~Y~~~------~G~~~LReaia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~l~-- 109 (418)
T d1w7la_ 38 PPPDFAVEAFQHAVSGDFMLNQYTKT------FGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALV-- 109 (418)
T ss_dssp CCCHHHHHHHHHHTSSCGGGGSCCCT------TCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHHHhCCCcccCCCCC------cCCHHHHHHHHHHHHHHhCCCCCcccceeeccCcHHHHHHHHHhhc--
Confidence 56888999999888631 122222 1112334444444444457642 479999999999999999998
Q ss_pred cccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCC------------CCccChHHHHhhccCCceEEEEecccCcc
Q psy15216 82 YKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN------------NGLITLSQLEEKICSDTILVSVMLVNNEI 149 (2602)
Q Consensus 82 ~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~------------~~~ld~e~l~~~i~~~tklv~i~~~~npT 149 (2602)
++||.|++++|.|+.+...+... |++++.++..+ ++.+|.+++....+++++++++++|||||
T Consensus 110 --~~g~~vlv~~p~~~~y~~~~~~~---g~~~v~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~i~~~~p~NPt 184 (418)
T d1w7la_ 110 --DEGDEVIIIEPFFDCYEPMTMMA---GGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTSRTKALVLNTPNNPL 184 (418)
T ss_dssp --CTTCEEEEEESCCTTHHHHHHHT---TCEEEEEECEECC---CCSEEGGGEECCHHHHHHHCCTTEEEEEEESSCTTT
T ss_pred --cCCceeeccccccchhHHHHHHc---CCEeeccccccccccccccccccCcccchhhhhccccccccceeccCcCCcc
Confidence 89999999999999998888776 88888777542 34578888999999999999999999999
Q ss_pred ccccc---HHHHHHHHHhcCCEEEEeccccccc----cc---ccCCCC-CccEEEeccccccCCCC--cEEEEEecCCCC
Q psy15216 150 GVIQP---ILEIGELCRSKGVIFHCDAAQAVGK----ID---INIQNY-KVDLMSFSAHKIYGPKG--IGALYIRRNPRT 216 (2602)
Q Consensus 150 G~~~~---l~~I~~la~~~g~~livD~a~a~g~----~~---~dl~~~-~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~ 216 (2602)
|.+++ +++|+++|++|++++|+|++|..-. .+ ..+... +..+++.|++|.++.+| +||++++++++.
T Consensus 185 G~~~s~~~~~~i~~~a~~~~v~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~pG~RvG~~v~~~~~~~ 264 (418)
T d1w7la_ 185 GKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSATGWKVGWVLGPDHIMK 264 (418)
T ss_dssp CCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCGGGCCEEEECCHHHHH
T ss_pred cccccHHHHHHHHHHHHhcCCCchhhhhhHHhhcCCCCCCCHHHccccccccceecccCccccCCCCcccccccchhhhh
Confidence 99998 5578888999999999999985421 11 122222 24588889999887777 899999987776
Q ss_pred cccceecCCCccccccccCcchhHHHHHHHHHHHH-------HHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCC
Q psy15216 217 RIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLA-------RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNR 289 (2602)
Q Consensus 217 ~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~-------~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~ 289 (2602)
.+..... .....++.....++..++... ..+......+++++++.+.+.|.+ .|+.+..|...
T Consensus 265 ~l~~~~~-------~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~--~g~~~~~P~gg- 334 (418)
T d1w7la_ 265 HLRTVHQ-------NSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQS--VGLKPLIPQGS- 334 (418)
T ss_dssp HHHHHHH-------TTTSCCCHHHHHHHHHHHHHHHHTTTSTTSHHHHHHHHHHHHHHHHHHHHHT--TTCEEEECSBS-
T ss_pred hhccccc-------cccccccchhhHHHHHHhhhccccccccccccccchhhhhhhhhhhhhhhhh--cCCcccCCCce-
Confidence 6654431 112233334444444555422 124567788888899999999977 57777654322
Q ss_pred CCceEEEEEcc--------------cChhHHHHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCC
Q psy15216 290 IPHNLNISFNF--------------IEGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGR 352 (2602)
Q Consensus 290 ~~~~~~~~~~~--------------~~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~ 352 (2602)
..+++.++. ....++..+| +||.+.||..|... . .. ...+++||||++
T Consensus 335 --~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~------~-~~-----~~~~~~iRis~~- 399 (418)
T d1w7la_ 335 --YFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSV------P-HQ-----KHFDHYIRFCFV- 399 (418)
T ss_dssp --SEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCH------H-HH-----TTSCSEEEEECC-
T ss_pred --eEEEEECcccccccchhccccccccHHHHHHHHHHHCCEEEEcchhhcCC------C-cc-----CCCCCEEEEEEc-
Confidence 233333331 1133455555 69999999887542 0 00 112489999986
Q ss_pred CCCHHHHHHHHHHHHhh
Q psy15216 353 FTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 353 ~~t~edid~li~~L~~~ 369 (2602)
+++++++.++++|++.
T Consensus 400 -~~~~~l~~a~~rl~~~ 415 (418)
T d1w7la_ 400 -KDEATLQAMDEKLRKW 415 (418)
T ss_dssp -CCHHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHH
Confidence 5889999999999864
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Probab=99.82 E-value=1.7e-19 Score=233.77 Aligned_cols=289 Identities=16% Similarity=0.170 Sum_probs=201.8
Q ss_pred HHHHHHHHHHHh----C----CCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEE
Q psy15216 1439 IEKARNEVAQLI----Y----ADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVT 1510 (2602)
Q Consensus 1439 ~~~lr~~ia~~~----g----~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~ 1510 (2602)
..++|++||+++ | .++++|++|+|+++++..++.++. ++||+|++++|.|+++...+.. ..|++++
T Consensus 85 ~~~LR~aiA~~l~~~~~~~~~~~~e~Ivit~G~~~al~~~~~~l~----~~Gd~Vlv~~P~y~~~~~~~~~--~~g~~~v 158 (428)
T d1iaya_ 85 LPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLA----DPGDAFLVPSPYYPAFNRDLRW--RTGVQLI 158 (428)
T ss_dssp CHHHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHHC----CTTCEEEEESSCCTTHHHHTTT--TTCCEEE
T ss_pred hHHHHHHHHHHHHHHhCCCCCCChhhEEEcCCHHHHHHHHHHHhC----CCCCEEEEccCCchHHHHHHHH--hcCCeEE
Confidence 457788888776 2 468899999999999999999987 8999999999999998765532 2489999
Q ss_pred EeccCC--CCCcChhHHHhh------ccCCceEEEEeccccccccccC---hHHHHHHhhhcCCEEEEecccccCcc---
Q psy15216 1511 YLKPKN--NGLITLSQLEEK------ICSDTILVSVMLVNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQAVGKI--- 1576 (2602)
Q Consensus 1511 ~v~~~~--~~~id~d~l~~~------i~~~t~lv~l~~~~n~tG~~~~---l~~I~~ia~~~gi~vivD~a~~~g~~--- 1576 (2602)
.++.+. ++.+|+++++.+ ..++++++++++|+||||.+++ +++|+++|++||+++|+|++|+....
T Consensus 159 ~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~vI~De~Y~~~~~~~~ 238 (428)
T d1iaya_ 159 PIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTP 238 (428)
T ss_dssp EECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSS
T ss_pred EeecccccccccccccccchhhhhhccCCCceEEEEccCCCcccccccccccchhheeeccCcEEEEecccccccccCcc
Confidence 998764 467899887655 3578899999999999999999 67899999999999999999863211
Q ss_pred -ccc-----------CCCCCccEEEEccccccCCCc--eEEEEEecCCC-CccccccccCCccccCCCCCcchhHHHHHH
Q psy15216 1577 -DIN-----------IQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPR-TRIEAQIHGGGHEYGLRSGTLATHQIVGMG 1641 (2602)
Q Consensus 1577 -~~~-----------l~~~~~D~~v~S~~K~~gp~G--~G~l~~~~~~~-~~l~~~~~g~~~~~~~~~gt~~~~~~~al~ 1641 (2602)
+.+ .......+++.|++|.++++| +||++..++.+ +.+.... ..+..+.....++.
T Consensus 239 ~~~s~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~GlRiG~~~~~~~~l~~~~~~~~---------~~~~~~~~~~~~~~ 309 (428)
T d1iaya_ 239 QFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARKMS---------SFGLVSTQTQYFLA 309 (428)
T ss_dssp CCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGGGCEEEEEESCHHHHHHHHHHH---------TTSCCCHHHHHHHH
T ss_pred cccccccccchhhccccccceEEEEecCCCcccCCCcccccccccccchhhhhhhhh---------cccccccccccchh
Confidence 000 111123477889999887777 89999865432 2222111 11223333333333
Q ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecC-------CcHHHHHhc---CC
Q psy15216 1642 EAFR---LARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI-------EGESLLMAI---KD 1708 (2602)
Q Consensus 1642 ~aL~---~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~-------~~~~~~~~L---~g 1708 (2602)
+.+. .....+++.++++.++++.+.+.|.. +|+.+..+... ....+.++.. +..++...| +|
T Consensus 310 a~l~~~~~~~~~~~~~~~~l~~r~~~~~~~L~~--~gi~~~~p~gg---~f~w~~l~~~~~~~~~~~~~~l~~~Ll~~~g 384 (428)
T d1iaya_ 310 AMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEV--VGIKCLKNNAG---LFCWMDLRPLLRESTFDSEMSLWRVIINDVK 384 (428)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTCCBCCCSSS---SEEEEECGGGCSSSSHHHHHHHHHHHHHTSC
T ss_pred hhhhhhccccccccccccccchhHHHHHHHHHh--CCCEEecCCcc---eEEEEECccccccCCCCCHHHHHHHHHHhCC
Confidence 3332 34455677788888889999999976 67766543221 1222233211 112344444 69
Q ss_pred EEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1709 IAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1709 I~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
|.+.||..|+.. ..+++|++++. .++++++.++++|++.
T Consensus 385 V~v~PG~~F~~~-----------------~~g~~Ris~a~-~~~~~l~~al~Rl~~~ 423 (428)
T d1iaya_ 385 LNVSPGSSFECQ-----------------EPGWFRVCFAN-MDDGTVDIALARIRRF 423 (428)
T ss_dssp EECEEGGGGTCS-----------------SSSEEEEECSS-SCHHHHHHHHHHHHHH
T ss_pred EEEEcchhcCCC-----------------CCCEEEEEeCC-CCHHHHHHHHHHHHHH
Confidence 999999988642 13899999863 4677899999999873
|
| >d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase ArnB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.82 E-value=1.5e-19 Score=231.07 Aligned_cols=331 Identities=16% Similarity=0.111 Sum_probs=224.7
Q ss_pred CCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCE
Q psy15216 1405 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKH 1484 (2602)
Q Consensus 1405 ~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~ 1484 (2602)
.+.+-++++.+.++..+... | ...+++++++++++|.+ ++++++|||.|+++++.++. +++||+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~-------G----~~v~~~E~~la~~~g~~--~ai~~~sgt~Al~~al~al~---~~~gde 73 (376)
T d1mdoa_ 10 MGAEELAAVKTVLDSGWITT-------G----PKNQELEAAFCRLTGNQ--YAVAVSSATAGMHIALMALG---IGEGDE 73 (376)
T ss_dssp CCHHHHHHHHHHHHHTCCSS-------S----HHHHHHHHHHHHHHCCS--EEEEESCHHHHHHHHHHHTT---CCTTCE
T ss_pred CCHHHHHHHHHHHhcCCCcC-------C----HHHHHHHHHHHHHHCcC--eEEEeCCHHHHHHHHHHHhC---CCCCCE
Confidence 34566788888887633221 2 24678999999999975 78999999999999999985 589999
Q ss_pred EEEcCCCCcchHHHHHHHHhCCcEEEEeccCC-CCCcChhHHHhhccCCceEEEEeccccccccccChHHHHHHhhhcCC
Q psy15216 1485 IITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGV 1563 (2602)
Q Consensus 1485 Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~-~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~~ia~~~gi 1563 (2602)
|++++.+|+++..++..+ |++++++++++ ++.+|+++|+++++++|++|+++|. .|...|+++|.++|++||+
T Consensus 74 Vi~~~~~~~~~~~ai~~~---g~~pv~~d~~~~~~~~d~~~l~~~i~~~tkaIi~~h~---~G~~~~~~~i~~i~~~~~i 147 (376)
T d1mdoa_ 74 VITPSMTWVSTLNMIVLL---GANPVMVDVDRDTLMVTPEHIEAAITPQTKAIIPVHY---AGAPADLDAIYALGERYGI 147 (376)
T ss_dssp EEEESSSCHHHHHHHHHT---TCEEEEECBCTTTCCBCHHHHHHHCCTTEEEECCBCG---GGCCCCHHHHHHHHHHHTC
T ss_pred EEEecccccccccchhcc---ccceeeecccccccCCCHHHHHHhcCCCCeEEEEeCC---CCCccchhHHHHHHHhcCc
Confidence 999999999999998877 99999999987 5779999999999999999999886 8999999999999999999
Q ss_pred EEEEecccccCccccc--CCCCCccEEEEccccccCCCceEEEEEecCC-CCccccccccCCcc--------------cc
Q psy15216 1564 IFHCDAAQAVGKIDIN--IQNYKVDLMSFSAHKIYGPKGIGALYIRRNP-RTRIEAQIHGGGHE--------------YG 1626 (2602)
Q Consensus 1564 ~vivD~a~~~g~~~~~--l~~~~~D~~v~S~~K~~gp~G~G~l~~~~~~-~~~l~~~~~g~~~~--------------~~ 1626 (2602)
++|+|+||++|...-+ ....+..++++..+|.++..+.|+++.+++. .+.++.+...|... ..
T Consensus 148 ~vIeD~a~a~g~~~~~~~~g~~g~~~~Sf~~~K~l~~g~GG~i~t~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 227 (376)
T d1mdoa_ 148 PVIEDAAHATGTSYKGRHIGARGTAIFSFHAIKNITCAEGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEV 227 (376)
T ss_dssp CBCEECTTCTTCEETTEETTSSSEEEEECCTTSSSCSSSCEEEEESCHHHHHHHHHHTBTTEECC-----------CCEE
T ss_pred eEEeccchhccCeeCCeecccccCccccCCCcCCCCCCCCCEEEEechhHHHHHHhhcccCCcccccccccccccccccc
Confidence 9999999999975322 2234444444555685543334877777642 22333222111110 00
Q ss_pred CCCCCc-chhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCC--CCCceEEEEEec----CC
Q psy15216 1627 LRSGTL-ATHQIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNN--RIPHNLNISFNF----IE 1698 (2602)
Q Consensus 1627 ~~~gt~-~~~~~~al~~aL~~~-~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~--~~~~~~~~~~~~----~~ 1698 (2602)
...+.. .... +.+|+... ...+++..++.+++++++.+.|.+ ++.+.+...... .......+.+.. .+
T Consensus 228 ~~~g~n~~~~~---~~Aai~~~qL~~~~~~~~~r~~~~~~~~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (376)
T d1mdoa_ 228 LAPGYKYNLPD---LNAAIALAQLQKLDALNARRAAIAAQYHQAMAD-LPFQPLSLPSWEHIHAWHLFIIRVDEARCGIT 303 (376)
T ss_dssp SSCCCBCCCCH---HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHT-SSCEECCCCSSCEECCCSCEEEECCHHHHSSC
T ss_pred hhcccccccch---hhhhhhhhhhhhhhHHHHHHhhhhhhhhhhccc-ccccccccccccccccccccccccccccchhh
Confidence 011111 1111 22223221 234677888899999999999987 666655543322 122222222221 23
Q ss_pred cHHHHHhc--CCEEEccccccCCCCCChhHHHHHcC-----CCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1699 GESLLMAI--KDIAVSSGSACTSASLEPSYVLRALG-----CNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1699 ~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~-----~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
.+++...| +||.++. ++.+.+.++.+ ..... .++....+.++|+++++.|.+|+++++++|++
T Consensus 304 Rd~l~~~L~~~gI~~~~--~y~~~~~~~~~-~~~~~~~~~p~a~~~~~~~i~LP~~~~lt~~ei~~I~~~i~~ 373 (376)
T d1mdoa_ 304 RDALMASLKTKGIGTGL--HFRAAHTQKYY-RERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQ 373 (376)
T ss_dssp HHHHHHHHHHTTBCCBC--CCCCGGGSHHH-HHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCeee--ECcchhcCHHH-HhhCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHH
Confidence 45677777 7887763 33332223322 22221 12233457899999999999999999999997
|
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Probab=99.81 E-value=2.3e-19 Score=232.79 Aligned_cols=289 Identities=18% Similarity=0.229 Sum_probs=204.1
Q ss_pred HHHHHHHHHHHh----C----CCCCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEE
Q psy15216 43 IEKARNEVAQLI----Y----ADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVT 114 (2602)
Q Consensus 43 ~~~~r~~lA~~~----g----~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~ 114 (2602)
..++|+++|+++ | ++|++|++|+|+++|+.+++.++. +|||.|++++|.|+.+...+.. ..|++++
T Consensus 86 ~~~LR~aiA~~l~~~~~~~~~~~pe~I~it~G~~~al~~~~~~l~----~pGd~Vlv~~P~y~~~~~~~~~--~~g~~~v 159 (431)
T d1m7ya_ 86 LPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLA----DPGEAVLIPTPYYPGFDRDLKW--RTGVEIV 159 (431)
T ss_dssp CHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHC----CTTCEEEEEESCCTTHHHHTTT--TTCCEEE
T ss_pred cHHHHHHHHHHHHHHhCCCCCCCcceEEECCCHHHHHHHHHHHhc----CCCCEEEEeCCCchhHHHHHHH--hcCceec
Confidence 345677776664 3 467899999999999999999998 8999999999999998766643 2478998
Q ss_pred EeccCC--CCccChHHHHhhcc------CCceEEEEecccCccccccc---HHHHHHHHHhcCCEEEEecccccccc---
Q psy15216 115 YLKPKN--NGLITLSQLEEKIC------SDTILVSVMLVNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQAVGKI--- 180 (2602)
Q Consensus 115 ~v~~~~--~~~ld~e~l~~~i~------~~tklv~i~~~~npTG~~~~---l~~I~~la~~~g~~livD~a~a~g~~--- 180 (2602)
.++.+. ++.+|++.+++.+. .+++++++++||||||.+++ +++|.++|++||+++|+|++|+....
T Consensus 160 ~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~nP~NPtG~~~s~~~l~~i~~~a~~~~~~vI~De~Y~~~~~~~~ 239 (431)
T d1m7ya_ 160 PIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSP 239 (431)
T ss_dssp EEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSS
T ss_pred cccccchhcccccHHHhhhhhhhhhhccCcceEEEecCccccccccccccccccccccccccCcceeecccccccccCCC
Confidence 888764 46789999988774 47889999999999999998 66778889999999999999864211
Q ss_pred -cccC-------------CCCCccEEEeccccccCCCC--cEEEEEecCCCCcccceecCCCccccccccCcchhHHHHH
Q psy15216 181 -DINI-------------QNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGM 244 (2602)
Q Consensus 181 -~~dl-------------~~~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al 244 (2602)
++++ ...+.-+++.|++|.+|.+| +||++.+++.+....... ......+.....++
T Consensus 240 ~~~s~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~RiG~~~~~~~~i~~~~~~~--------~~~~~~~~~~~~~~ 311 (431)
T d1m7ya_ 240 SFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKM--------SSFGLVSSQTQHLL 311 (431)
T ss_dssp CCCCHHHHTTTTTCSSSSSGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHHHHHHHH--------GGGSCCCHHHHHHH
T ss_pred CCCCHHHHhhhcccccccccCceEEEEecCcccccCCCCccceeccchhhhHHHHHHH--------hccccccccccchh
Confidence 0000 00112377889999988887 899999876543322111 01122223333333
Q ss_pred HHHHH---HHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEccc-------ChhHHHHHh---C
Q psy15216 245 GEAFR---LARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI-------EGESLLMAI---K 311 (2602)
Q Consensus 245 ~~al~---~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~-------~~~~~~~~L---~ 311 (2602)
.+.+. ....++.+.+.++++.++.+.+.|.+ +|+.+..+.. ...+++.++.. +..++...| +
T Consensus 312 ~a~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~--~gi~~~~p~g---g~f~w~~l~~~~~~~~~~~~~~l~~~ll~~~ 386 (431)
T d1m7ya_ 312 SAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQK--SGISCLNGNA---GLFCWVDMRHLLRSNTFEAEMELWKKIVYEV 386 (431)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TTCEECCCCS---SSEEEEECGGGSSSSSHHHHHHHHHHHHHTS
T ss_pred hhhhccchhhhhhhhhhhhhhhhhhhhhhhhhhc--CCcEEecCCc---eeEEEEECccccccCcccCHHHHHHHHHHHC
Confidence 33333 33456778888888999999999977 7888875532 22334444431 122445554 6
Q ss_pred CeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 312 DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 312 gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
||.+.||..|... .++++||+++. .++++++..+++|++
T Consensus 387 gV~v~PG~~F~~~-----------------~~~~~Ri~~a~-~~e~~l~~al~rL~~ 425 (431)
T d1m7ya_ 387 HLNISPGSSCHCT-----------------EPGWFRVCFAN-LPERTLDLAMQRLKA 425 (431)
T ss_dssp CEECEEGGGGTCS-----------------STTEEEEECSS-SCHHHHHHHHHHHHH
T ss_pred CEEEEeccccCCC-----------------CCCEEEEEeCc-CCHHHHHHHHHHHHH
Confidence 9999999887542 13899999863 467789999999885
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=2.7e-19 Score=231.38 Aligned_cols=332 Identities=14% Similarity=0.085 Sum_probs=229.9
Q ss_pred CCCccccceeeeeceeeeccCCCCCCCHHHHHHHHHHHhhc---cCCCCCccchhHHHHHHHHHHHHHHHHHHh----CC
Q psy15216 1380 GFKAESSGIVMRPYTNIVFKDATTPIDPRVVDKMIPYLRVQ---FGNPASRNHIYGWTAEKAIEKARNEVAQLI----YA 1452 (2602)
Q Consensus 1380 g~~~~~~ei~~iP~~~v~L~~~~~~~~~~v~eal~~~l~~~---~~np~~~~~~~~~~~~~~~~~lr~~ia~~~----g~ 1452 (2602)
+.++.+..++. |+ .+.|+.+.+++.+.+... ..|+.. ....++|+++++++ |.
T Consensus 24 ~~dvI~l~~G~-p~---------~~~p~~v~~a~~~al~~~~~~~~Y~~~----------~G~~~LReaia~~~~~~~g~ 83 (418)
T d1w7la_ 24 EHDVVNLGQGF-PD---------FPPPDFAVEAFQHAVSGDFMLNQYTKT----------FGYPPLTKILASFFGELLGQ 83 (418)
T ss_dssp TSCCEECCCCS-CS---------SCCCHHHHHHHHHHTSSCGGGGSCCCT----------TCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCEECCCCC-CC---------CCCCHHHHHHHHHHHhCCCcccCCCCC----------cCCHHHHHHHHHHHHHHhCC
Confidence 44566666663 43 366888999999988641 123322 11345666666654 65
Q ss_pred C--C-CcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCC------------C
Q psy15216 1453 D--P-REIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN------------N 1517 (2602)
Q Consensus 1453 ~--~-~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~------------~ 1517 (2602)
+ + ++|++|+|+++|+.++++++. ++||.|++++|.|+.+....... |++++.++..+ +
T Consensus 84 ~~~~~~~I~it~G~~~al~~~~~~l~----~~g~~vlv~~p~~~~y~~~~~~~---g~~~v~~~~~~~~~~~~~~~~~~~ 156 (418)
T d1w7la_ 84 EIDPLRNVLVTVGGYGALFTAFQALV----DEGDEVIIIEPFFDCYEPMTMMA---GGRPVFVSLKPGPIQNGELGSSSN 156 (418)
T ss_dssp CCCHHHHEEEESHHHHHHHHHHHHHC----CTTCEEEEEESCCTTHHHHHHHT---TCEEEEEECEECC---CCSEEGGG
T ss_pred CCCcccceeeccCcHHHHHHHHHhhc----cCCceeeccccccchhHHHHHHc---CCEeeccccccccccccccccccC
Confidence 4 2 479999999999999999998 89999999999999998877776 88888777542 3
Q ss_pred CCcChhHHHhhccCCceEEEEeccccccccccC---hHHHHHHhhhcCCEEEEecccccCc----cc---ccCCCC-Ccc
Q psy15216 1518 GLITLSQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQAVGK----ID---INIQNY-KVD 1586 (2602)
Q Consensus 1518 ~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~---l~~I~~ia~~~gi~vivD~a~~~g~----~~---~~l~~~-~~D 1586 (2602)
+.+|.+++....+++++++++++|+||||.+++ +++|+++|++|++++|.|++|..-. .+ ..+.+. ...
T Consensus 157 ~~~d~~~~~~~~~~~~~~i~~~~p~NPtG~~~s~~~~~~i~~~a~~~~v~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~ 236 (418)
T d1w7la_ 157 WQLDPMELAGKFTSRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERT 236 (418)
T ss_dssp EECCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGE
T ss_pred cccchhhhhccccccccceeccCcCCcccccccHHHHHHHHHHHHhcCCCchhhhhhHHhhcCCCCCCCHHHcccccccc
Confidence 457888999999999999999999999999998 6788889999999999999975321 11 122222 235
Q ss_pred EEEEccccccCCCc--eEEEEEecCCCCccccccccCCccccCCCCCcchhHHHHHHHHHHHHH-------HHHHHHHHH
Q psy15216 1587 LMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLAR-------IEMKEELKR 1657 (2602)
Q Consensus 1587 ~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~-------~~~~~~~~~ 1657 (2602)
+++.|++|.++.+| +||++++++++..+..... .. ..+.+.....++..++.... ..+...+.+
T Consensus 237 i~~~S~SK~~~~pG~RvG~~v~~~~~~~~l~~~~~------~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~ 309 (418)
T d1w7la_ 237 LTIGSAGKTFSATGWKVGWVLGPDHIMKHLRTVHQ------NS-VFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQA 309 (418)
T ss_dssp EEEEEHHHHTTCGGGCCEEEECCHHHHHHHHHHHH------TT-TSCCCHHHHHHHHHHHHHHHHTTTSTTSHHHHHHHH
T ss_pred ceecccCccccCCCCcccccccchhhhhhhccccc------cc-cccccchhhHHHHHHhhhccccccccccccccchhh
Confidence 77889999777667 9999999876666554331 11 22333344444445554221 245677888
Q ss_pred HHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEec--------------CCcHHHHHhc---CCEEEccccccCCC
Q psy15216 1658 ILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF--------------IEGESLLMAI---KDIAVSSGSACTSA 1720 (2602)
Q Consensus 1658 ~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~L---~gI~v~~g~~~~~~ 1720 (2602)
++++++.+.+.|.+ .|+.+..|... ....+.++. ....++...| +||.+.||+.|...
T Consensus 310 ~~~~r~~l~~~L~~--~g~~~~~P~gg---~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~ 384 (418)
T d1w7la_ 310 MQRCRDHMIRSLQS--VGLKPLIPQGS---YFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSV 384 (418)
T ss_dssp HHHHHHHHHHHHHT--TTCEEEECSBS---SEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCH
T ss_pred hhhhhhhhhhhhhh--cCCcccCCCce---eEEEEECcccccccchhccccccccHHHHHHHHHHHCCEEEEcchhhcCC
Confidence 88899999999987 47776643221 112222221 1123455554 69999999988642
Q ss_pred CCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1721 SLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1721 ~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
. .. ....++||||+. +++++++.++++|++
T Consensus 385 ------~-~~-----~~~~~~iRis~~--~~~~~l~~a~~rl~~ 414 (418)
T d1w7la_ 385 ------P-HQ-----KHFDHYIRFCFV--KDEATLQAMDEKLRK 414 (418)
T ss_dssp ------H-HH-----TTSCSEEEEECC--CCHHHHHHHHHHHHH
T ss_pred ------C-cc-----CCCCCEEEEEEc--CCHHHHHHHHHHHHH
Confidence 0 00 112389999986 588999999999987
|
| >d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Thermotoga maritima [TaxId: 2336]
Probab=99.81 E-value=7.6e-19 Score=219.81 Aligned_cols=293 Identities=16% Similarity=0.084 Sum_probs=211.7
Q ss_pred CCCCCCHHHHHHHHHHHhhc--cCCCCCccchhHHHHHHHHHHHHHHHHHHhC---CCCCcEEEeCCHHHHHHHHHHhhh
Q psy15216 1401 ATTPIDPRVVDKMIPYLRVQ--FGNPASRNHIYGWTAEKAIEKARNEVAQLIY---ADPREIIWTSGATESNNLAIKGAA 1475 (2602)
Q Consensus 1401 ~~~~~~~~v~eal~~~l~~~--~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g---~~~~~iv~t~gaT~al~~al~~l~ 1475 (2602)
+..+.|+.+++++.+.++.. ..+|..| ..++|++++++++ .++++|++|+|+++++.++++
T Consensus 29 np~~~p~~i~~~~~~~~~~~~~~~yp~~g-----------~~~Lr~aia~~~~~~~v~~d~I~it~G~~~~l~~l~~--- 94 (334)
T d2f8ja1 29 NPFPFPEDLVDEVFRRLNSDALRIYYDSP-----------DEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVMML--- 94 (334)
T ss_dssp CSSCCCHHHHHHHHHHCCTTGGGSCCCSS-----------CHHHHHHHHHHHTCSSCCGGGEEEEEHHHHHHHHHHH---
T ss_pred CCCCCCHHHHHHHHHHhhcchhcCCCCCC-----------cHHHHHHHHHHhcccCCCcceEEecCcchhHHHHHhh---
Confidence 44678889999998888642 2344432 3578999999986 477899999999998877533
Q ss_pred hhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccCCceEEEEeccccccccccChHHHH
Q psy15216 1476 HFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIG 1555 (2602)
Q Consensus 1476 ~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~ 1555 (2602)
+||+|++++|.|+.+...+..+ |++++.++.++++..+ +...++++++++++|+||||.+++.++|.
T Consensus 95 -----~~d~v~i~~P~y~~~~~~~~~~---g~~~v~v~~~~~~~~~-----~~~~~~~~~l~l~nP~NPtG~~~s~~~l~ 161 (334)
T d2f8ja1 95 -----MFDRSVFFPPTYSCYRIFAKAV---GAKFLEVPLTKDLRIP-----EVNVGEGDVVFIPNPNNPTGHVFEREEIE 161 (334)
T ss_dssp -----HSSEEEECSSCCHHHHHHHHHH---TCCEEECCCCTTSCCC-----CCCCCTTEEEEEESSCTTTCCCCCHHHHH
T ss_pred -----hccccccccccccccccchhcc---CCcccccccccccccc-----ccccccceEEEecccccccceeecHHHhh
Confidence 5689999999999998888877 9999999988766543 34567899999999999999999988887
Q ss_pred HHhhhcCCEEEEecccccCcc---cccCCCCCccEEEEccccccCCCc--eEEEEEecCCCCccccccccCCccccCCCC
Q psy15216 1556 ELCRSKGVIFHCDAAQAVGKI---DINIQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSG 1630 (2602)
Q Consensus 1556 ~ia~~~gi~vivD~a~~~g~~---~~~l~~~~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~g 1630 (2602)
++ .++++++++|.++..... .......+.-+++.|++|.++.+| +||++++++++..+..... ..
T Consensus 162 ~~-~~~~~~ii~Dd~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~~~~~~~~i~~l~~~~~---------~~ 231 (334)
T d2f8ja1 162 RI-LKTGAFVALDEAYYEFHGESYVDFLKKYENLAVIRTFSKAFSLAAQRVGYVVASEKFIDAYNRVRL---------PF 231 (334)
T ss_dssp HH-HTTTCEEEEECTTGGGTCCCCGGGGGTCSSEEEEEESTTTSSCTTTCEEEEEECHHHHHHHHHHSC---------TT
T ss_pred cc-ccceeEEeecccchhhcccccccccccCceEEEEecCccccchhhhhhhhcccchHHHHHHHHhhc---------cc
Confidence 75 467899999988643221 111222234588889999888777 8999999877766654321 12
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecCCcHHHHHhc--CC
Q psy15216 1631 TLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI--KD 1708 (2602)
Q Consensus 1631 t~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~g 1708 (2602)
..+.....++.+++.. .+.++..++++.+.++++.+.|.+ .|+.+..+ .. ....+.++..+..++.+.| +|
T Consensus 232 ~~s~~~~~~a~~~l~~-~~~~~~~~~~~~~~r~~l~~~L~~--~g~~~~~~-~g---~f~~~~~~~~~~~~~~~~L~~~G 304 (334)
T d2f8ja1 232 NVSYVSQMFAKVALDH-REIFEERTKFIVEERERMKSALRE--MGYRITDS-RG---NFVFVFMEKEEKERLLEHLRTKN 304 (334)
T ss_dssp CSCHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHH--HTCEECCC-CS---SEEEEECCHHHHHHHHHHHHHTT
T ss_pred ccchhhhhhccccccc-ccchhhHHHHHHHHHHHHHHHHHH--CCCeECCC-Cc---eEEEEECCCCCHHHHHHHHHHCC
Confidence 3344444444445542 345677778888889999999988 36777533 22 2333444545556676666 89
Q ss_pred EEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1709 IAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1709 I~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
|.+++. .++||||++ |.+|+++++++|++
T Consensus 305 I~vr~~------------------------~~~vRis~g---~~ee~~~l~~~l~~ 333 (334)
T d2f8ja1 305 VAVRSF------------------------REGVRITIG---KREENDMILRELEV 333 (334)
T ss_dssp EECEEE------------------------TTEEEEECC---CHHHHHHHHHHHHH
T ss_pred CEECCC------------------------CCeEEEEcC---CHHHHHHHHHHHhc
Confidence 988632 178999997 78999999999985
|
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Probab=99.81 E-value=2.5e-19 Score=232.43 Aligned_cols=289 Identities=18% Similarity=0.232 Sum_probs=203.9
Q ss_pred HHHHHHHHHHHh----C----CCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEE
Q psy15216 1439 IEKARNEVAQLI----Y----ADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVT 1510 (2602)
Q Consensus 1439 ~~~lr~~ia~~~----g----~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~ 1510 (2602)
..++|+++|+++ | +++++|++|+|+++|+..++.++. +|||+|++++|.|+.+...+.. ..|++++
T Consensus 86 ~~~LR~aiA~~l~~~~~~~~~~~pe~I~it~G~~~al~~~~~~l~----~pGd~Vlv~~P~y~~~~~~~~~--~~g~~~v 159 (431)
T d1m7ya_ 86 LPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLA----DPGEAVLIPTPYYPGFDRDLKW--RTGVEIV 159 (431)
T ss_dssp CHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHC----CTTCEEEEEESCCTTHHHHTTT--TTCCEEE
T ss_pred cHHHHHHHHHHHHHHhCCCCCCCcceEEECCCHHHHHHHHHHHhc----CCCCEEEEeCCCchhHHHHHHH--hcCceec
Confidence 456777777765 2 468899999999999999999987 8999999999999998766543 2378998
Q ss_pred EeccCC--CCCcChhHHHhhcc------CCceEEEEeccccccccccC---hHHHHHHhhhcCCEEEEecccccCcc---
Q psy15216 1511 YLKPKN--NGLITLSQLEEKIC------SDTILVSVMLVNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQAVGKI--- 1576 (2602)
Q Consensus 1511 ~v~~~~--~~~id~d~l~~~i~------~~t~lv~l~~~~n~tG~~~~---l~~I~~ia~~~gi~vivD~a~~~g~~--- 1576 (2602)
.++.+. ++.+|++.+++++. .+++++++++|+||||.+++ +++|+++|++||+++|+|++|+.-..
T Consensus 160 ~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~nP~NPtG~~~s~~~l~~i~~~a~~~~~~vI~De~Y~~~~~~~~ 239 (431)
T d1m7ya_ 160 PIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSP 239 (431)
T ss_dssp EEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSS
T ss_pred cccccchhcccccHHHhhhhhhhhhhccCcceEEEecCccccccccccccccccccccccccCcceeecccccccccCCC
Confidence 888765 45689999988774 47889999999999999999 77889999999999999999863211
Q ss_pred -cccC-------------CCCCccEEEEccccccCCCc--eEEEEEecCCCCccccccccCCccccCCCCCcchhHHHHH
Q psy15216 1577 -DINI-------------QNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGM 1640 (2602)
Q Consensus 1577 -~~~l-------------~~~~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al 1640 (2602)
+.++ ...+.-+++.|++|.+|++| +||++.+++.+....... .. ....+.....++
T Consensus 240 ~~~s~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~RiG~~~~~~~~i~~~~~~~-------~~-~~~~~~~~~~~~ 311 (431)
T d1m7ya_ 240 SFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKM-------SS-FGLVSSQTQHLL 311 (431)
T ss_dssp CCCCHHHHTTTTTCSSSSSGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHHHHHHHH-------GG-GSCCCHHHHHHH
T ss_pred CCCCHHHHhhhcccccccccCceEEEEecCcccccCCCCccceeccchhhhHHHHHHH-------hc-cccccccccchh
Confidence 0100 00112377889999888777 899999876543322111 01 112222333333
Q ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEec-C------CcHHHHHhc---C
Q psy15216 1641 GEAFR---LARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-I------EGESLLMAI---K 1707 (2602)
Q Consensus 1641 ~~aL~---~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~-~------~~~~~~~~L---~ 1707 (2602)
.+.+. .....+.+.+.++++.++.+.+.|.+ +|+.+..+... ....+.++. . +..++..+| +
T Consensus 312 ~a~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~--~gi~~~~p~gg---~f~w~~l~~~~~~~~~~~~~~l~~~ll~~~ 386 (431)
T d1m7ya_ 312 SAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQK--SGISCLNGNAG---LFCWVDMRHLLRSNTFEAEMELWKKIVYEV 386 (431)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TTCEECCCCSS---SEEEEECGGGSSSSSHHHHHHHHHHHHHTS
T ss_pred hhhhccchhhhhhhhhhhhhhhhhhhhhhhhhhc--CCcEEecCCce---eEEEEECccccccCcccCHHHHHHHHHHHC
Confidence 33333 33456778888889999999999977 78887644322 122223322 1 122444444 6
Q ss_pred CEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1708 DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1708 gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
||.+.||..|... ..+++||+++. .++++++.++++|++
T Consensus 387 gV~v~PG~~F~~~-----------------~~~~~Ri~~a~-~~e~~l~~al~rL~~ 425 (431)
T d1m7ya_ 387 HLNISPGSSCHCT-----------------EPGWFRVCFAN-LPERTLDLAMQRLKA 425 (431)
T ss_dssp CEECEEGGGGTCS-----------------STTEEEEECSS-SCHHHHHHHHHHHHH
T ss_pred CEEEEeccccCCC-----------------CCCEEEEEeCc-CCHHHHHHHHHHHHH
Confidence 9999999988653 13899999863 466889999999986
|
| >d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]
Probab=99.80 E-value=4.7e-19 Score=224.98 Aligned_cols=335 Identities=12% Similarity=0.072 Sum_probs=222.5
Q ss_pred cCCCCCCCHHHHHHHHHHHhhccCCCCCc--cchhHHHHHHHHHHHHHHHHHHhCCCCC-cEEEeCCHHHHHHHHHHhhh
Q psy15216 1399 KDATTPIDPRVVDKMIPYLRVQFGNPASR--NHIYGWTAEKAIEKARNEVAQLIYADPR-EIIWTSGATESNNLAIKGAA 1475 (2602)
Q Consensus 1399 ~~~~~~~~~~v~eal~~~l~~~~~np~~~--~~~~~~~~~~~~~~lr~~ia~~~g~~~~-~iv~t~gaT~al~~al~~l~ 1475 (2602)
.+...+.|++|++++.+.+.+....+.+. .++.+..+.++++++|+.|+++++++.+ .|+|++|++++.+.++....
T Consensus 8 ~pGP~~vp~~V~eam~~~~~~~~~~~~~~~~~sHRs~ef~~~~~~~r~~l~~l~~~~~~~~i~~~~gs~t~~~ea~~~~l 87 (361)
T d2c0ra1 8 NAGPAALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQFAMIPMNF 87 (361)
T ss_dssp CSSSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCcCCCHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhcc
Confidence 44567889999999999876533222110 1123678889999999999999999544 68888888777665554443
Q ss_pred hhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccCCceEEEEeccccccccccChHHHH
Q psy15216 1476 HFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIG 1555 (2602)
Q Consensus 1476 ~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~ 1555 (2602)
+.+|+.+++....+.+ ..+...+...|..+..+..+....++++.+++.+..++ +.+++|.||...|+.+|.
T Consensus 88 ---~~~~~~~l~~~~g~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~tg~~~~~~~i~ 159 (361)
T d2c0ra1 88 ---LKEGQTANYVMTGSWA-SKALKEAKLIGDTHVAASSEASNYMTLPKLQEIQLQDN----AAYLHLTSNETIEGAQFK 159 (361)
T ss_dssp ---CCTTCEEEEEECSHHH-HHHHHHHHHHSCEEEEEECGGGTTCSCCCGGGCCCCTT----EEEEEEESEETTTTEECS
T ss_pred ---ccCCCceEEEeechhh-hhhhhhhhhcCceeeeeccccccccchhhhhhhcccCc----ceEEEEecccceecceEE
Confidence 4788888876533322 33444456679999999888888889999988887765 355678899999999999
Q ss_pred HHhhhcCCEEEEecccccCcccccCCCCCccEEEEccccccCCCceEEEEEecCCCCccccccc-cCCc----cccCCCC
Q psy15216 1556 ELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIH-GGGH----EYGLRSG 1630 (2602)
Q Consensus 1556 ~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K~~gp~G~G~l~~~~~~~~~l~~~~~-g~~~----~~~~~~g 1630 (2602)
++|++||+++++|+++++|..++++.++++| +++++|.++|+|.+++++..+......+... .+.. .......
T Consensus 160 ~~~~~~~al~~vDavss~g~~~id~~~~di~--~~s~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (361)
T d2c0ra1 160 AFPDTGSVPLIGDMSSDILSRPFDLNQFGLV--YAGAQKNLGPSGVTVVIVREDLVAESPKHLPTMLRYDTYVKNNSLYN 237 (361)
T ss_dssp SCCCCTTSCEEEECTTTTTSSCCCGGGCSEE--EEETTTTTCCSSCEEEEEEGGGSSSCCTTSCGGGCHHHHHHTTTCSS
T ss_pred EeeccCCceEEEEeeccccccccccccceeE--EEecccccccccCcEEEEEhHHhhhCccccccccccccccccccccc
Confidence 9999999999999999999999999877554 5678896665554444444333322222111 1110 1111223
Q ss_pred CcchhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEec-CCcHHHHHhc-
Q psy15216 1631 TLATHQIVGMGEAFR--LARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGESLLMAI- 1706 (2602)
Q Consensus 1631 t~~~~~~~al~~aL~--~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~L- 1706 (2602)
+++.....++..++. ...........+++..+..+................+..+++..+.+.++. .+..++...|
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rS~~~~~~~~~~~~~~~~~~~~L~ 317 (361)
T d2c0ra1 238 TPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDVDSRSDMNITFRLASEELEKEFVKASE 317 (361)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSCGGGBCSSEEEEECSCHHHHHHHHHHHH
T ss_pred cccceeeehhhhHHHhhhhccchHHHHHHHHHHHHHhhhhhhhcccccccCCChhhccceEEEEECCCcccHHHHHHHHH
Confidence 333333333333333 222334555555556666666666553333444444555566666666653 3445666666
Q ss_pred -CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1707 -KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1707 -~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
+||.++.|..+. +.+|||++.++|.|||++|+++|++
T Consensus 318 ~~GI~~~~G~~~~---------------------g~~RIs~~~~~~~edv~~Lv~~l~~ 355 (361)
T d2c0ra1 318 QEGFVGLKGHRSV---------------------GGLRASIYNAVPYESCEALVQFMEH 355 (361)
T ss_dssp HTTEESCBCCTTT---------------------CSEEEECCTTSCHHHHHHHHHHHHH
T ss_pred HCCCEEecCCCcC---------------------CeEEEEecCCCCHHHHHHHHHHHHH
Confidence 899998875432 3499999999999999999999997
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Probab=99.80 E-value=3.8e-19 Score=229.33 Aligned_cols=293 Identities=14% Similarity=0.110 Sum_probs=202.2
Q ss_pred HHHHHHHHHHHh----C--CCCCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEe
Q psy15216 43 IEKARNEVAQLI----Y--ADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYL 116 (2602)
Q Consensus 43 ~~~~r~~lA~~~----g--~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v 116 (2602)
..++|+++|+++ | +++++|++|+|+++++..++.++. ++||.|++++|.|+.+...+..+ |++++.+
T Consensus 73 ~~~lR~aia~~l~~~~g~~~~~~~I~it~G~~~al~~~~~~l~----~~gd~v~~~~P~y~~~~~~~~~~---g~~~~~v 145 (403)
T d1wsta1 73 FTPLRLALARWMEKRYDIPMSKVEIMTVAGSQQALDLIGRVFL----NPGDPIVVEAPTYLAAIQAFKYY---DPEFISI 145 (403)
T ss_dssp CHHHHHHHHHHHHHHHCCCCTTCEEEEESSHHHHHHHHHHHHC----CTTCEEEEEESCCHHHHHHHHTT---CCEEEEE
T ss_pred CHHHHHHHHHHHHHHhCCCCChHHeeecccchHHHHHHHHHHh----hcCCccccCCCcchhhhHHHhhc---cccceeE
Confidence 345566666654 4 578899999999999999999988 89999999999999988877665 9999999
Q ss_pred ccCCCCc--cCh----HHHHhhccCCceEEEEecccCcccccccH---HHHHHHHHhcCCEEEEeccccccc------cc
Q psy15216 117 KPKNNGL--ITL----SQLEEKICSDTILVSVMLVNNEIGVIQPI---LEIGELCRSKGVIFHCDAAQAVGK------ID 181 (2602)
Q Consensus 117 ~~~~~~~--ld~----e~l~~~i~~~tklv~i~~~~npTG~~~~l---~~I~~la~~~g~~livD~a~a~g~------~~ 181 (2602)
+.+..+. ... +......++.+.++++++|+||||.+++. ++|+++|++|+++||+|++|..-. .+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~l~~i~~~a~~~~~~li~De~y~~l~~~~~~~~~ 225 (403)
T d1wsta1 146 PLDDKGMRVDLLEEKLEELRKQGKRVKIVYTVSTFQNPAGVTMSVDRRKKLLELANEYDFLIVEDGPYSELRYSGEPTPP 225 (403)
T ss_dssp EEETTEECHHHHHHHHHHHHHTTCCCCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCC
T ss_pred eecccCCccccccccchhhhhccccccccccccccCCCCCccCCHHHHHHHHHHHHhcCceeccccchhheecCCCCCCc
Confidence 8765431 111 12222334566789999999999999985 568888999999999999985311 11
Q ss_pred c-cCCCCCccEEEeccccccCCCC--cEEEEEecCCCCcccceecCCCccccccccCcchhHHHHHHHHHH--HHHHhHH
Q psy15216 182 I-NIQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFR--LARIEMK 256 (2602)
Q Consensus 182 ~-dl~~~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~--~~~~~~~ 256 (2602)
+ .....+..+++.|++|.++ +| +||+++++++++.+..... .....++.....+..+.+. ....++.
T Consensus 226 ~~~~~~~~~~i~~~S~SK~~~-~G~RiG~~i~~~~~i~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (403)
T d1wsta1 226 IKHFDDYGRVIYLGTFSKILA-PGFRIGWVAAHPHLIRKMEIAKQ-------SIDLCTNTFGQAIAWKYVENGYLDEHIP 297 (403)
T ss_dssp GGGGCSSSCEEEEEESTTTTC-GGGCCEEEEECHHHHHHHHHHHH-------HHHSSCCHHHHHHHHHHHHTTHHHHHHH
T ss_pred ccccCCCCcEEEEccccceec-CcccccccccchHHHHHHHHHHh-------hhccccccchhhhHHhhhhccccchhHH
Confidence 1 1223445688899999775 45 8999998877665543221 1122344444333333333 3445567
Q ss_pred HHHHHHHHHHHHHHHHHhhcc-CceEEeCCCCCCCCceEEEEEcc-cChhHHHHHh--CCeEEcccccCCCCCCChHHHH
Q psy15216 257 EELKRILFLQKRLYNGLMESI-EEIYINGDMNNRIPHNLNISFNF-IEGESLLMAI--KDIAVSSGSACTSASLEPSYVL 332 (2602)
Q Consensus 257 ~~~~~~~~l~~~l~~~L~~~~-~g~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~ 332 (2602)
+.++.+...++.+.+.|.+.. .++....|.. ...+++.++. .+...+.+.| +||.+.||..|...
T Consensus 298 ~~~~~~~~~~~~~~~~L~~~~~~~~~~~~p~g---g~~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~f~~~-------- 366 (403)
T d1wsta1 298 KIIEFYKPRRDAMLEALEEYMPEGVEWTKPEG---GMFVRVTLPEGIDTKLMMERAVAKGVAYVPGEAFFVH-------- 366 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCTTCEECCCSB---SSEEEEECCTTCCTTTTHHHHHHTTEECEEGGGGSTT--------
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCeEEeCCCc---eeEEEEECCCCCCHHHHHHHHHHCCEEEEechhhcCC--------
Confidence 778888888888888887632 2455554432 2334455553 3556666666 89999999877642
Q ss_pred HHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 333 RALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 333 ~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
....+++||+++. .++++++.++++|++.
T Consensus 367 -------~~~~~~iRi~~~~-~~~~~l~~al~rl~~~ 395 (403)
T d1wsta1 367 -------RDKKNTMRLNFTY-VPEETIREGVRRLAET 395 (403)
T ss_dssp -------CCCCSEEEEECSS-SCHHHHHHHHHHHHHH
T ss_pred -------CCCCCEEEEEecC-CCHHHHHHHHHHHHHH
Confidence 0124899999964 5789999999998864
|
| >d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase ArnB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.80 E-value=5.7e-19 Score=225.67 Aligned_cols=332 Identities=16% Similarity=0.108 Sum_probs=228.2
Q ss_pred CCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCE
Q psy15216 9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKH 88 (2602)
Q Consensus 9 ~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~ 88 (2602)
.+++.++++.+.+.+.+.. .| +..+++++++|+++|.+ ++++++|+|.|+++++.++. +++||+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~-------~G----~~v~~~E~~la~~~g~~--~ai~~~sgt~Al~~al~al~---~~~gde 73 (376)
T d1mdoa_ 10 MGAEELAAVKTVLDSGWIT-------TG----PKNQELEAAFCRLTGNQ--YAVAVSSATAGMHIALMALG---IGEGDE 73 (376)
T ss_dssp CCHHHHHHHHHHHHHTCCS-------SS----HHHHHHHHHHHHHHCCS--EEEEESCHHHHHHHHHHHTT---CCTTCE
T ss_pred CCHHHHHHHHHHHhcCCCc-------CC----HHHHHHHHHHHHHHCcC--eEEEeCCHHHHHHHHHHHhC---CCCCCE
Confidence 4567788899988763221 12 35688999999999975 78999999999999999985 589999
Q ss_pred EEEcCCCCcccHHHHHHHHhCCcEEEEeccCC-CCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHhcCC
Q psy15216 89 IITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGV 167 (2602)
Q Consensus 89 Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~-~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~~g~ 167 (2602)
|++++.+|+++..++..+ |++++++++++ ++.+|+++|+++++++|++|+++|. .|...|+++|.++|++||+
T Consensus 74 Vi~~~~~~~~~~~ai~~~---g~~pv~~d~~~~~~~~d~~~l~~~i~~~tkaIi~~h~---~G~~~~~~~i~~i~~~~~i 147 (376)
T d1mdoa_ 74 VITPSMTWVSTLNMIVLL---GANPVMVDVDRDTLMVTPEHIEAAITPQTKAIIPVHY---AGAPADLDAIYALGERYGI 147 (376)
T ss_dssp EEEESSSCHHHHHHHHHT---TCEEEEECBCTTTCCBCHHHHHHHCCTTEEEECCBCG---GGCCCCHHHHHHHHHHHTC
T ss_pred EEEecccccccccchhcc---ccceeeecccccccCCCHHHHHHhcCCCCeEEEEeCC---CCCccchhHHHHHHHhcCc
Confidence 999999999999998877 99999999987 5789999999999999999998875 8999999999999999999
Q ss_pred EEEEecccccccccc--cCCCCCccEEEeccccccCCCCcEEEEEecC-CCCcccceecCCCcc-----------cc--c
Q psy15216 168 IFHCDAAQAVGKIDI--NIQNYKVDLMSFSAHKIYGPKGIGALYIRRN-PRTRIEAQIHGGGHE-----------YG--L 231 (2602)
Q Consensus 168 ~livD~a~a~g~~~~--dl~~~~~D~~~~S~~K~~Gp~G~G~l~~~~~-~~~~l~~~~~g~~~~-----------~~--~ 231 (2602)
++|+|+||++|...- .....+..+++++.+|.++..+.|+++.+++ +.++++.....+... .. +
T Consensus 148 ~vIeD~a~a~g~~~~~~~~g~~g~~~~Sf~~~K~l~~g~GG~i~t~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 227 (376)
T d1mdoa_ 148 PVIEDAAHATGTSYKGRHIGARGTAIFSFHAIKNITCAEGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEV 227 (376)
T ss_dssp CBCEECTTCTTCEETTEETTSSSEEEEECCTTSSSCSSSCEEEEESCHHHHHHHHHHTBTTEECC-----------CCEE
T ss_pred eEEeccchhccCeeCCeecccccCccccCCCcCCCCCCCCCEEEEechhHHHHHHhhcccCCcccccccccccccccccc
Confidence 999999999987532 2233444455556678555433477777654 333343322221110 00 0
Q ss_pred -ccc-CcchhHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCC--CCCceEEEEEcc----cC
Q psy15216 232 -RSG-TLATHQIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNN--RIPHNLNISFNF----IE 302 (2602)
Q Consensus 232 -~~g-t~~~~~~~al~~al~~~-~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~--~~~~~~~~~~~~----~~ 302 (2602)
..+ ...... +.+|+... ...++++.++.+++++++.+.|.+ .+...+...... .......+.++. .+
T Consensus 228 ~~~g~n~~~~~---~~Aai~~~qL~~~~~~~~~r~~~~~~~~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (376)
T d1mdoa_ 228 LAPGYKYNLPD---LNAAIALAQLQKLDALNARRAAIAAQYHQAMAD-LPFQPLSLPSWEHIHAWHLFIIRVDEARCGIT 303 (376)
T ss_dssp SSCCCBCCCCH---HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHT-SSCEECCCCSSCEECCCSCEEEECCHHHHSSC
T ss_pred hhcccccccch---hhhhhhhhhhhhhhHHHHHHhhhhhhhhhhccc-ccccccccccccccccccccccccccccchhh
Confidence 011 111111 22222221 245688888999999999999987 666655433222 112222233221 24
Q ss_pred hhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcC-----CCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 303 GESLLMAI--KDIAVSSGSACTSASLEPSYVLRALG-----CNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 303 ~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g-----~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
.+++.+.| +||.++. ++.+.+.++.+. .... ..+....+.|.++++++.|++|+++++++|++.
T Consensus 304 Rd~l~~~L~~~gI~~~~--~y~~~~~~~~~~-~~~~~~~~p~a~~~~~~~i~LP~~~~lt~~ei~~I~~~i~~i 374 (376)
T d1mdoa_ 304 RDALMASLKTKGIGTGL--HFRAAHTQKYYR-ERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQI 374 (376)
T ss_dssp HHHHHHHHHHTTBCCBC--CCCCGGGSHHHH-HHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCeee--ECcchhcCHHHH-hhCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHH
Confidence 56788877 7888764 333333343332 2121 122334578999999999999999999999963
|
| >d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus alcalophilus [TaxId: 1445]
Probab=99.79 E-value=7.5e-19 Score=223.22 Aligned_cols=335 Identities=10% Similarity=-0.008 Sum_probs=223.9
Q ss_pred CCCCCCCHHHHHHHHHHHhhhcCCCCCCCcc---hhhhHHHHHHHHHHHHHHHhCCCCC-cEEEeCCHHHHHHHHHHhcc
Q psy15216 4 SATTPIDPRVVDKMIPYLRVQFGNPASRNHI---YGWTAEKAIEKARNEVAQLIYADPR-EIIWTSGATESNNLAIKGAA 79 (2602)
Q Consensus 4 a~~~~~p~~v~~a~~~~l~~~~~~p~~~~~~---~~~~~~~~~~~~r~~lA~~~g~~~~-~Iv~t~g~T~al~~~~~~l~ 79 (2602)
+|.++.|++|++++.+.+.+.. +.+.+.+. .+..+...++++|+.+++++|++.+ .|++++|+++++..+.....
T Consensus 9 pGP~~~p~~V~~a~~~~~~~~~-~~~~~~~~~sHRs~~~~~~~~~~r~~l~~l~~~~~~~~i~~~~gt~~~~~~~~~~~~ 87 (360)
T d1w23a_ 9 AGPSALPKPALERAQKELLNFN-DTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQFTMLPMNL 87 (360)
T ss_dssp SSSCCCCHHHHHHHHHTSSSST-TSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCcCCCHHHHHHHHHHHHhhc-ccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHhhh
Confidence 3455889999999999875532 22222211 2556778999999999999999765 58999999888887777666
Q ss_pred cccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHH
Q psy15216 80 HFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIG 159 (2602)
Q Consensus 80 ~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~ 159 (2602)
..+++.+++....+.+ ..++..+.+.+...............++.++...... .++|.+|.||...|+++|.
T Consensus 88 ---~~~~~~v~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~tg~~~~~~~i~ 159 (360)
T d1w23a_ 88 ---LTKGTIGNYVLTGSWS-EKALKEAKLLGETHIAASTKANSYQSIPDFSEFQLNE----NDAYLHITSNNTIYGTQYQ 159 (360)
T ss_dssp ---CCTTCEEEEEECSHHH-HHHHHHHHTTSEEEEEEECGGGTSCSCCCGGGCCCCT----TEEEEEEESEETTTTEECS
T ss_pred ---cccCcccceeeccchh-hhhHHHHHHhhhcceeeccccccccchhhhhhccccc----ccceeEecCCccccceeee
Confidence 4677888877654444 5667777777777777665444444555555544332 3457778899999999999
Q ss_pred HHHHhcCCEEEEecccccccccccCCCCCccEEEeccccccCCCCcEEEEEecCCCCcccceecCCCc----cccccccC
Q psy15216 160 ELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGH----EYGLRSGT 235 (2602)
Q Consensus 160 ~la~~~g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K~~Gp~G~G~l~~~~~~~~~l~~~~~g~~~----~~~~~~gt 235 (2602)
++||++|+++++|++|++|+.++|++++++|+++++.||+++| |.|+++.++...+...+....+.. .......+
T Consensus 160 ~~~~~~g~l~ivDavqs~g~~~id~~~~~vd~~~~~~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (360)
T d1w23a_ 160 NFPEINHAPLIADMSSDILSRPLKVNQFGMIYAGAQKNLGPSG-VTVVIVKKDLLNTKVEQVPTMLQYATHIKSDSLYNT 238 (360)
T ss_dssp SCCCCCSSCEEEECTTTTTSSCCCGGGCSEEEEETTTTTSCTT-CEEEEEEHHHHCSCCTTCCGGGCHHHHHHTTTCSSC
T ss_pred eccccceeeEEeeccccccccccccccccceEEeeccccccCC-cceeeEechhhhcccccCCcchhhhhhhhhhhhccc
Confidence 9999999999999999999999999999998888887775444 467777666544433322211111 11122334
Q ss_pred cchhHHHHHHHHHH-HHHHh-HHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc-cChhHHHHHh--
Q psy15216 236 LATHQIVGMGEAFR-LARIE-MKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGESLLMAI-- 310 (2602)
Q Consensus 236 ~~~~~~~al~~al~-~~~~~-~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~L-- 310 (2602)
+......+...++. ..... ......+....+...............+...+..+++..+.|.++. .+..++...|
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rS~~vvsf~i~~~~~~~~~~~~l~~ 318 (360)
T d1w23a_ 239 PPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGHAEKGSRSLMNVTFNLRNEELNQQFLAKAKE 318 (360)
T ss_dssp CCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTSSEESSCGGGBCSSEEEEECSSHHHHHHHHHHHHH
T ss_pred ccceeeechhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhcccccccCCChhhcceeEEEEEcCCCccHHHHHHHHHH
Confidence 55544444444444 22222 3344444444444444444442233445555566666666666653 3445666666
Q ss_pred CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 311 KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 311 ~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
+||.++.|..|. +.+|+|+..++|.|||++|++.|++.
T Consensus 319 ~GI~~~~G~~~~---------------------ggiRiS~~~~~t~e~V~~Li~~~~~~ 356 (360)
T d1w23a_ 319 QGFVGLNGHRSV---------------------GGCRASIYNAVPIDACIALRELMIQF 356 (360)
T ss_dssp TTEESCBCCTTT---------------------CSEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCeeeeCCCcc---------------------CcEEEEeeCCCCHHHHHHHHHHHHHH
Confidence 899998886653 34999998888999999999999963
|
| >d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) species: Escherichia coli [TaxId: 562]
Probab=99.79 E-value=3.7e-18 Score=215.89 Aligned_cols=323 Identities=13% Similarity=0.110 Sum_probs=234.2
Q ss_pred CCCCCC----CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHh
Q psy15216 2 DYSATT----PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKG 77 (2602)
Q Consensus 2 d~a~~~----~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~ 77 (2602)
|++++. ...|.+.+++.++++.+-..+. ....-....+..+++++.+|+++|.+ ..++.++++.|+..++.+
T Consensus 42 ~f~s~dYLGl~~~p~v~~a~~~a~~~~G~~~~--~sr~~~g~~~~~~~lE~~LA~~~g~e--~al~~~SG~~an~~~i~a 117 (383)
T d1bs0a_ 42 NFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSG--GSGHVSGYSVVHQALEEELAEWLGYS--RALLFISGFAANQAVIAA 117 (383)
T ss_dssp ECSCCCTTSGGGCHHHHHHHHHHHHHHCSCCC--SBTTTTCCCHHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHH
T ss_pred EEEcccccccCCCHHHHHHHHHHHHHhCCCCC--ccccccCcchHHHHHHHHHHHhcCCC--ceEEecccchhhHHHHHh
Confidence 555543 3578999999999986322221 12222233467889999999999964 788899999999999999
Q ss_pred cccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhcc---CCceEEEEecccCccccccc
Q psy15216 78 AAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKIC---SDTILVSVMLVNNEIGVIQP 154 (2602)
Q Consensus 78 l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~---~~tklv~i~~~~npTG~~~~ 154 (2602)
+. +++|.|++....|.++....+. .+++++.++.+ |++++++.+. +++++|++..+++++|.+.|
T Consensus 118 l~----~~~d~v~~d~~~h~si~~g~~~---~~~~~~~~~hn-----d~~~le~~l~~~~~~~~~vv~e~v~s~~G~i~p 185 (383)
T d1bs0a_ 118 MM----AKEDRIAADRLSHASLLEAASL---SPSQLRRFAHN-----DVTHLARLLASPCPGQQMVVTEGVFSMDGDSAP 185 (383)
T ss_dssp HC----CTTCEEEEETTCCHHHHHHHHT---SSSEEEEECTT-----CHHHHHHHHHSCCSSCEEEEEESBCTTTCCBCC
T ss_pred hc----CCCceEEeeccccHHHhhcccc---CCCcceEecch-----HHHHHHHHhcccCCCceEEEecCCCCCCCcccc
Confidence 98 8999999999999998766544 48888888743 7888877763 56789999999999999999
Q ss_pred HHHHHHHHHhcCCEEEEecccccccccccC------CCCCccEEEeccccccCCCCcEEEEEecCCCCcccceecCCCcc
Q psy15216 155 ILEIGELCRSKGVIFHCDAAQAVGKIDINI------QNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHE 228 (2602)
Q Consensus 155 l~~I~~la~~~g~~livD~a~a~g~~~~dl------~~~~~D~~~~S~~K~~Gp~G~G~l~~~~~~~~~l~~~~~g~~~~ 228 (2602)
+++|.++|++||+++++|++|++|....+. .....++++.+++|.+|..| |++..+.+..+.++..-.
T Consensus 186 l~~l~~l~~~~~~~livDeah~~gv~G~~g~G~~~~~~~~~~~~~~t~~ka~g~~G-g~v~~~~~~~~~l~~~~~----- 259 (383)
T d1bs0a_ 186 LAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGFGVSG-AAVLCSSTVADYLLQFAR----- 259 (383)
T ss_dssp HHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSSTTSSCC-EEEEECHHHHHHHHHHCH-----
T ss_pred hhHHHHHHHhcCcEEEeecceeeeecCCcccchHHHcCCccccccccccccccccc-cccccchhHHHHHHhhch-----
Confidence 999999999999999999999988654332 23346788899999998876 788888766665543211
Q ss_pred ccccccCcchhHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc-cChhHH
Q psy15216 229 YGLRSGTLATHQIVGMGEAFRLAR-IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGESL 306 (2602)
Q Consensus 229 ~~~~~gt~~~~~~~al~~al~~~~-~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~-~~~~~~ 306 (2602)
.......++++...++.+++++.. ...+....+..++..++++.|.+ .++.+...+. |.+. +.+.. .....+
T Consensus 260 ~~~~s~~~~p~~~aa~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~l~~--~g~~~~~~~s---~Ii~-v~~g~~~~a~~~ 333 (383)
T d1bs0a_ 260 HLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQD--LPFTLADSCS---AIQP-LIVGDNSRALQL 333 (383)
T ss_dssp HHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTT--SSCEECSCCS---SBCC-EEEESHHHHHHH
T ss_pred hhhhcccccchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh--cCCccCCCCC---CEEE-EEECCHHHHHHH
Confidence 111233455556666667777554 34577888888999999999977 4666654332 2222 22322 223355
Q ss_pred HHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 307 LMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 307 ~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
.+.| +||.+.+......+ .....+|++++.++|++|||+++++|+.
T Consensus 334 ~~~L~~~Gi~v~~~~~PtVp----------------~g~~~lRi~~~a~ht~edid~l~~~L~~ 381 (383)
T d1bs0a_ 334 AEKLRQQGCWVTAIRPPTVP----------------AGTARLRLTLTAAHEMQDIDRLLEVLHG 381 (383)
T ss_dssp HHHHHHTTEECCEECTTSSC----------------TTCEEECCBCCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHCCceEEEEcCCCCC----------------CCCceEEEEeCCCCCHHHHHHHHHHHHh
Confidence 5666 89998765433322 1125699999999999999999999985
|
| >d1wfza_ d.224.1.2 (A:) Iron-sulfur cluster protein U (IscU) {Mouse (Mus musculus), mitochondrial [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: SufE/NifU superfamily: SufE/NifU family: NifU/IscU domain domain: Iron-sulfur cluster protein U (IscU) species: Mouse (Mus musculus), mitochondrial [TaxId: 10090]
Probab=99.79 E-value=4.9e-20 Score=187.52 Aligned_cols=87 Identities=74% Similarity=1.174 Sum_probs=82.4
Q ss_pred hcCCCCcCcccCCCCcceeeeecCCCCccEEEEEEEEcCCCcEEeeeeeccccchhHhhHHHHHHHHcCCChhhhhcccc
Q psy15216 1779 YENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKTYGCGSAIASSSLVTEWVKGKTLDEAMSIKN 1858 (2602)
Q Consensus 1779 ~~~p~~~g~~~~~~~~~~~~~~~~~~cgd~~~~~~~~~~~~~i~~~~~~~~gc~~~~a~~s~~~~~~~g~~~~~~~~i~~ 1858 (2602)
-+||||+|.|+++|..++.|+.+||.|||.|+|||+|+++|+|+|++|+++||++++||+||+||+++|||++|+..|++
T Consensus 7 gkNPrn~G~l~~~d~~~~~g~~gNP~CGD~i~i~l~v~~~~~I~di~F~~~GC~is~AsaS~~tel~~Gkt~~ea~~i~~ 86 (130)
T d1wfza_ 7 GENPRNVGSLDKTSKNVGTGLVGAPACGDVMKLQIQVDEKGKIVDARFKTFGCGSAIASSSLATEWVKGKTVEEALTIKN 86 (130)
T ss_dssp CSCCSSCCCCCTTCSSEEEEEEEETTTTEEEEEEEEECSSSBEEEEEEECCSCHHHHHHHHHHHHHHTTSBHHHHHHCCH
T ss_pred CCCCCCCcCCCCCCcccCccccCCCCcCcEEEEEEEecCCCeEEEEEEEeeCCchhHHHHHHHHHHHhccCHHHHHhcCc
Confidence 47999999999999888999999999999999999998778999999999999999999999999999999999999999
Q ss_pred cchhhhh
Q psy15216 1859 TDIAEEL 1865 (2602)
Q Consensus 1859 ~~i~~~l 1865 (2602)
.++.+.+
T Consensus 87 ~~i~~~l 93 (130)
T d1wfza_ 87 TDIAKEL 93 (130)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 8887763
|
| >d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Escherichia coli [TaxId: 562]
Probab=99.79 E-value=9.1e-19 Score=222.49 Aligned_cols=331 Identities=11% Similarity=-0.048 Sum_probs=229.9
Q ss_pred CCCCHHHHHHHHHHHhhhcCCCCCCCc---chhhhHHHHHHHHHHHHHHHhCCCCC-cEEEeCCHHHHHHHHHHhccccc
Q psy15216 7 TPIDPRVVDKMIPYLRVQFGNPASRNH---IYGWTAEKAIEKARNEVAQLIYADPR-EIIWTSGATESNNLAIKGAAHFY 82 (2602)
Q Consensus 7 ~~~p~~v~~a~~~~l~~~~~~p~~~~~---~~~~~~~~~~~~~r~~lA~~~g~~~~-~Iv~t~g~T~al~~~~~~l~~~~ 82 (2602)
+..|+.|+++|.+.+.+.+ +.+.+.+ ..+..+...++++|+.+++++|++.+ .|++++|++++++.++....
T Consensus 10 ~~~p~~Vl~a~~~~~~~~~-~~~~~~~~~sHRs~ef~~l~~~~r~~l~~l~~~~~~~~v~~~~gs~t~~~~a~~~~~--- 85 (360)
T d1bjna_ 10 AMLPAEVLKQAQQELRDWN-GLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAAVPLNI--- 85 (360)
T ss_dssp CCCCHHHHHHHHHTSSSGG-GSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHH---
T ss_pred cCCCHHHHHHHHHHHhhhc-ccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCchHHHHhhhhhcc---
Confidence 3779999999999887543 2222221 23556778899999999999999654 68999888888777766555
Q ss_pred ccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHH
Q psy15216 83 KKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELC 162 (2602)
Q Consensus 83 ~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la 162 (2602)
..+++.+++....+ ....++..+++.|..+.......+...+.+.+++.+.++++++++++.+|.||+..|+..+. +
T Consensus 86 ~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~t~~~~~~~~i~--~ 162 (360)
T d1bjna_ 86 LGDKTTADYVDAGY-WAASAIKEAKKYCTPNVFDAKVTVDGLRAVKPMREWQLSDNAAYMHYCPNETIDGIAIDETP--D 162 (360)
T ss_dssp CTTCCEEEEEESSH-HHHHHHHHHTTTSEEEEEECEEEETTEEEECCGGGCCCCSSCSCEEECSEETTTTEECCCCC--C
T ss_pred cccccccceecccc-hhhhhHHHHhhcCccceeeccccCCCcchhhhhhhhccCCceeEEEecccccccCcccccee--c
Confidence 46777777765433 33344455567788787777666677788888889999999999999999999999987764 5
Q ss_pred HhcCCEEEEecccccccccccCCCCCccEEEecccc-ccCCCCcEEEEEecCCCCcccceecCCCc----cccccccCcc
Q psy15216 163 RSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGH----EYGLRSGTLA 237 (2602)
Q Consensus 163 ~~~g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K-~~Gp~G~G~l~~~~~~~~~l~~~~~g~~~----~~~~~~gt~~ 237 (2602)
+.+++++++|++++.+..+++.. +.|++++|+|| +++|+|.|+++.++...+........+.. .......+++
T Consensus 163 ~~~~~~v~vDa~~~~~~~~vd~~--~~dv~~~ss~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (360)
T d1bjna_ 163 FGADVVVAADFSSTILSRPIDVS--RYGVIYAGAQKNIGPAGLTIVIVREDLLGKANIACPSILDYSILNDNGSMFNTPP 240 (360)
T ss_dssp CCTTCCEEEECTTTTTSSCCCGG--GCSEEEEETTTTTSSTTCEEEEEEGGGCSCCCTTSCGGGCHHHHHHTTTCSSCCC
T ss_pred ccccceeeeeeeccccceeeeec--cceeEEEEcccccccCCCceeEeeehhhhhccccCCcchhhHHHHhhhhhccccc
Confidence 67899999999999998887765 46899999999 55577778888877655544332222111 1111122333
Q ss_pred h-hHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc-cChhHHHHHh--CC
Q psy15216 238 T-HQIVGMGEAFRLAR-IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGESLLMAI--KD 312 (2602)
Q Consensus 238 ~-~~~~al~~al~~~~-~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~L--~g 312 (2602)
. ....+...++.... .+.+...++..+.+..+...+.. .........+..+.+..+.|.++. .+...+...| +|
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~rs~~v~~f~~~~~~~~~~~~~~l~~~G 319 (360)
T d1bjna_ 241 TFAWYLSGLVFKWLKANGGVAEMDKINQQKAELLYGVIDN-SDFYRNDVAKRNRSRMNVPFQLADSALDKLFLEESFAAG 319 (360)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH-CSSEECCBCGGGBCSSEEEEEESSGGGHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhc-cccccccCCcccccceEEEEEcCCcccHHHHHHHHHHCC
Confidence 3 33333333333333 33555666666666666666555 444444555555666677777753 5566677666 89
Q ss_pred eEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 313 IAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 313 I~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
|.++.|..+. +.+|||++.++|.|||++|+++|++
T Consensus 320 i~~~~G~~~~---------------------g~~Ris~~~~~t~edV~~li~~l~e 354 (360)
T d1bjna_ 320 LHALKGHRVV---------------------GGMRASIYNAMPLEGVKALTDFMVE 354 (360)
T ss_dssp EECCBCCTTT---------------------CSEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEeecCCCcc---------------------CeEEEEecCCCCHHHHHHHHHHHHH
Confidence 9988775432 3499999999999999999999996
|
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.78 E-value=9.7e-18 Score=216.55 Aligned_cols=311 Identities=15% Similarity=0.152 Sum_probs=220.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhCCCC---------CcEEEeCCHHHHHHHHHHhhhhhhcc---------------CCC
Q psy15216 1428 NHIYGWTAEKAIEKARNEVAQLIYADP---------REIIWTSGATESNNLAIKGAAHFYKK---------------RGK 1483 (2602)
Q Consensus 1428 ~~~~~~~~~~~~~~lr~~ia~~~g~~~---------~~iv~t~gaT~al~~al~~l~~~~~~---------------~gd 1483 (2602)
.+..++.......++.+++++++|.+. ...++|+|+|+|+..++.+.....++ +.-
T Consensus 104 ~~~~sp~~t~iE~~v~~wl~~l~g~p~~~~~~~~~~~~G~~~~Ggs~anl~al~~AR~~~~~~~~~~~~g~~~~~~~~~~ 183 (476)
T d1js3a_ 104 SWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKL 183 (476)
T ss_dssp SGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHE
T ss_pred chhhhhhHHHHHHHHHHHHHHHhCCCcccccCCCCCCCceECCcHHHHHHHHHHHHHHHHHHhhcccccCcccccccCce
Confidence 456677788888999999999998843 23789999999999999877643211 112
Q ss_pred EEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccCC------ceEEEEeccccccccccChHHHHHH
Q psy15216 1484 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSD------TILVSVMLVNNEIGVIQPILEIGEL 1557 (2602)
Q Consensus 1484 ~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~~------t~lv~l~~~~n~tG~~~~l~~I~~i 1557 (2602)
.|++++..|.|+..++..+ |..++.|+++.++.+|+++|+++|.+. +-+|+.+.+++.||.+.|+++|+++
T Consensus 184 vv~~s~~~H~Si~ka~~~l---Gl~~~~v~~d~~~~md~~~L~~~i~~~~~~g~~p~~VvataGtt~~G~iDpl~~I~~i 260 (476)
T d1js3a_ 184 VAYASDQAHSSVERAGLIG---GVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPI 260 (476)
T ss_dssp EEEEETTCCHHHHHHHHHH---TCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHH
T ss_pred EEEecccccHHHHHHHHhc---CceEEEeccCCCCCcCHHHHHHHHHHHHhcCCCcEEEeecCCCccceeeccHHHHHHH
Confidence 6899999999999998888 899999999999999999999999653 4589999999999999999999999
Q ss_pred hhhcCCEEEEecccccCcccccCC-----CC-CccEEEEcccc-ccCCCceEEEEEecCCC-C---ccccccc-----cC
Q psy15216 1558 CRSKGVIFHCDAAQAVGKIDINIQ-----NY-KVDLMSFSAHK-IYGPKGIGALYIRRNPR-T---RIEAQIH-----GG 1621 (2602)
Q Consensus 1558 a~~~gi~vivD~a~~~g~~~~~l~-----~~-~~D~~v~S~~K-~~gp~G~G~l~~~~~~~-~---~l~~~~~-----g~ 1621 (2602)
|++||+|+|||+|++......+-. .+ .+|.+++++|| ++.|.++|++++++... . ...+.+. +.
T Consensus 261 ~~~~~~wlHVDAA~Gg~~~~~~~~~~~~~gi~~aDSit~d~HK~l~~P~~~g~~l~r~~~~~~~~~~~~~~~~~~~~~~~ 340 (476)
T d1js3a_ 261 CHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGS 340 (476)
T ss_dssp HHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESCHHHHHGGGC------------C
T ss_pred HHhcCcEEEEecccchhhhhhcchhhhhcCCcccceeeecCccccccCCcceeecccchHHHHHHHhcChhhhccccccc
Confidence 999999999999987655443221 11 47999999999 66788899999986310 0 0011111 00
Q ss_pred Cc----cccCCCCCcchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEec
Q psy15216 1622 GH----EYGLRSGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF 1696 (2602)
Q Consensus 1622 ~~----~~~~~~gt~~~~~~~al~~aL~-~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~ 1696 (2602)
.. ......++.....+ .+..++. +...++.++.++..++++++++.+.+ .+++++..++.. ++++|.+..
T Consensus 341 ~~~~~~~~~~~~~sr~~~al-~lw~~l~~~G~~g~~~~i~~~~~lA~~l~~~l~~-~~~fel~~~p~l---~iV~Fr~~~ 415 (476)
T d1js3a_ 341 GLITDYRHWQLPLGRRFRSL-KMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQ-DPRFEVCAEVTL---GLVCFRLKG 415 (476)
T ss_dssp CSCCCGGGSSSCSCCCCTHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CTTEEECSCCCS---SEEEEEESS
T ss_pred cccccccccccccchhhHHH-HHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhc-CCCeEEECCCce---EEEEEEccC
Confidence 00 00111233343333 3455666 56788999999999999999999998 799999866432 445555543
Q ss_pred CCc--HHHHHhcCCEEEcccccc-CCCCCChhHHHHHcCCCccccCCeEEEecC-CCCCHHHHHHHHHHHHH
Q psy15216 1697 IEG--ESLLMAIKDIAVSSGSAC-TSASLEPSYVLRALGCNDELAHSSIRFTIG-RFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1697 ~~~--~~~~~~L~gI~v~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~iRls~~-~~~t~edid~li~~L~~ 1764 (2602)
.+. ..+.++| ...|..+ .+. .+ ....++|++++ +.+|.+||+.+++.|++
T Consensus 416 ~d~~n~~l~~~l----~~~G~~~~s~t---------~~-----~g~~~lR~~i~n~~Tt~~did~~~~~i~~ 469 (476)
T d1js3a_ 416 SDGLNEALLERI----NSARKIHLVPC---------RL-----RGQFVLRFAICSRKVESGHVRLAWEHIRG 469 (476)
T ss_dssp CHHHHHHHHHHH----HHHTSCBCEEE---------EE-----TTEEEEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHH----HhcCCEEEeee---------eE-----CCEEEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 221 2334443 1112111 110 00 01247999977 67899999999999997
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Probab=99.78 E-value=9.3e-19 Score=226.80 Aligned_cols=293 Identities=13% Similarity=0.090 Sum_probs=197.3
Q ss_pred HHHHHHHHHHHHhC---CCCCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEecc
Q psy15216 42 AIEKARNEVAQLIY---ADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP 118 (2602)
Q Consensus 42 ~~~~~r~~lA~~~g---~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~ 118 (2602)
+.+.+.+++.+.+| +++++|++|+|+++|+.+++.++. +|||.|++++|.|+.+...++.. |++++.++.
T Consensus 85 LR~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~~~----~~Gd~Vlv~~P~y~~~~~~~~~~---g~~~~~~~~ 157 (420)
T d1vp4a_ 85 LKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFL----DDESYCVLDDPAYLGAINAFRQY---LANFVVVPL 157 (420)
T ss_dssp HHHHHHHHHHHHHCCCSCCGGGEEEEEHHHHHHHHHHHHHC----CTTCEEEEEESCCHHHHHHHHTT---TCEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCCCCHHHeEeccchhhhHHHHHHhhh----ccccccccccccccchhHHHHHH---hhhcccccc
Confidence 33444444444445 367899999999999999999988 89999999999999987776655 999999997
Q ss_pred CCCCccChHHHHhhc---------cCCceEEEEecccCccccccc---HHHHHHHHHhcCCEEEEecccccccc------
Q psy15216 119 KNNGLITLSQLEEKI---------CSDTILVSVMLVNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQAVGKI------ 180 (2602)
Q Consensus 119 ~~~~~ld~e~l~~~i---------~~~tklv~i~~~~npTG~~~~---l~~I~~la~~~g~~livD~a~a~g~~------ 180 (2602)
++.+ +|++.+...+ ++.+.++++++||||||.+++ +++|+++|++|++++|+|++++.-..
T Consensus 158 ~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~ 236 (420)
T d1vp4a_ 158 EDDG-MDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVD 236 (420)
T ss_dssp ETTE-ECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCC
T ss_pred cccc-cccchhhhhhhhhHHHhhccccceeeEecCCCCccchhhhhhhhhhhhhhhhcccccccccchhhhccccCcccc
Confidence 6643 6777665543 223457778999999999998 56788999999999999999863211
Q ss_pred c-ccCCCCCccEEEeccccccCCCC--cEEEEEecCCCCcccceecCCCccccccccCcchhHHHHHHHHHH--HHHHhH
Q psy15216 181 D-INIQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFR--LARIEM 255 (2602)
Q Consensus 181 ~-~dl~~~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~--~~~~~~ 255 (2602)
+ ......+.-+++.|++|+++ +| +||+++++++++.+..... .+..+++...+ .++..++. ...+++
T Consensus 237 ~~~~~~~~~~~i~~~s~sk~~~-~G~RiG~~~~~~~~i~~l~~~~~------~~~~~~~~~~q-~~~a~~l~~~~~~~~~ 308 (420)
T d1vp4a_ 237 PIFKIGGPERVVLLNTFSKVLA-PGLRIGMVAGSKEFIRKIVQAKQ------SADLCSPAITH-RLAARYLERYDLLEQL 308 (420)
T ss_dssp CHHHHHCTTTEEEEEESTTTTC-GGGCEEEEECCHHHHHHHHHHHH------HHHSSCCHHHH-HHHHHHHHHSCHHHHT
T ss_pred cccccccccceeEEeccccccc-cccccccccccchhhhhhhhhhh------hccccCchhhh-hhhhhhcccccccccc
Confidence 0 01112233466777888664 55 8999999887776654321 11123333333 33333443 122344
Q ss_pred HHHHHHHHHHHHHHHHHHhhc---cCceEEeCCCCCCCCceEEEEEcc-cChhHHHHHh--CCeEEcccccCCCCCCChH
Q psy15216 256 KEELKRILFLQKRLYNGLMES---IEEIYINGDMNNRIPHNLNISFNF-IEGESLLMAI--KDIAVSSGSACTSASLEPS 329 (2602)
Q Consensus 256 ~~~~~~~~~l~~~l~~~L~~~---~~g~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~ 329 (2602)
.+.++++++.++.+.+.|.+. .+|+++..|... ..+++.++. .+..++.+.| +||.+.||..|...
T Consensus 309 ~~~~~~~~~~~~~~~~~L~~~~~~~~g~~~~~p~gg---~f~~~~~~~~~d~~~~~~~l~~~gV~v~PG~~F~~~----- 380 (420)
T d1vp4a_ 309 KPTIELYRRKRTVMLNALEEYFSDIPGVKWVKSEGG---LFIWLTLPEGFDTWEMFEYAKRKKVFYVPGRVFKVY----- 380 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTSTTCEECCCSBS---SEEEEECCTTCCTTTTHHHHHHHTEECEEGGGGCTT-----
T ss_pred hhHHHHhhhhcccchhhhhhhhccCCCcEEecCCce---EEEEEECCCCCCHHHHHHHHHHCCeEEEechhhCCC-----
Confidence 555666666666666666542 468887755432 334455543 4566666656 79999999887642
Q ss_pred HHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 330 YVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 330 ~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
....+++|||++. .++++++..+++|++.
T Consensus 381 ----------~~~~~~iRls~~~-~~~e~l~~a~~rL~~~ 409 (420)
T d1vp4a_ 381 ----------DEPSPSMRLSFCL-PPDEKIVEGIKRLREV 409 (420)
T ss_dssp ----------CCCCSEEEEECSS-SCHHHHHHHHHHHHHH
T ss_pred ----------CCCCCEEEEEeCc-CCHHHHHHHHHHHHHH
Confidence 1124799999963 5778899999988863
|
| >d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Escherichia coli [TaxId: 562]
Probab=99.78 E-value=1.9e-18 Score=219.39 Aligned_cols=335 Identities=10% Similarity=-0.051 Sum_probs=233.0
Q ss_pred cCCCCCCCHHHHHHHHHHHhhccCCCCCc---cchhHHHHHHHHHHHHHHHHHHhCCCCC-cEEEeCCHHHHHHHHHHhh
Q psy15216 1399 KDATTPIDPRVVDKMIPYLRVQFGNPASR---NHIYGWTAEKAIEKARNEVAQLIYADPR-EIIWTSGATESNNLAIKGA 1474 (2602)
Q Consensus 1399 ~~~~~~~~~~v~eal~~~l~~~~~np~~~---~~~~~~~~~~~~~~lr~~ia~~~g~~~~-~iv~t~gaT~al~~al~~l 1474 (2602)
++.....|++|++++.+.+.++..+ +.+ .++.+..+.++++++|+.|++++|++.+ .|+|++|++++.+.++...
T Consensus 6 ~pGP~~~p~~Vl~a~~~~~~~~~~~-~~~~~~~sHRs~ef~~l~~~~r~~l~~l~~~~~~~~v~~~~gs~t~~~~a~~~~ 84 (360)
T d1bjna_ 6 SSGPAMLPAEVLKQAQQELRDWNGL-GTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAAVPLN 84 (360)
T ss_dssp CSSSCCCCHHHHHHHHHTSSSGGGS-SSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHH
T ss_pred CCCCcCCCHHHHHHHHHHHhhhccc-CccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCchHHHHhhhhhc
Confidence 3455778999999999988765432 221 1234678889999999999999999544 6888999988887776655
Q ss_pred hhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccCCceEEEEeccccccccccChHHH
Q psy15216 1475 AHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEI 1554 (2602)
Q Consensus 1475 ~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I 1554 (2602)
. ..+++.+++....+ ....++..++..|..+......++...+.+.+++.+.+++++++++|.+|.||...|+..+
T Consensus 85 ~---~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~t~~~~~~~~i 160 (360)
T d1bjna_ 85 I---LGDKTTADYVDAGY-WAASAIKEAKKYCTPNVFDAKVTVDGLRAVKPMREWQLSDNAAYMHYCPNETIDGIAIDET 160 (360)
T ss_dssp H---CTTCCEEEEEESSH-HHHHHHHHHTTTSEEEEEECEEEETTEEEECCGGGCCCCSSCSCEEECSEETTTTEECCCC
T ss_pred c---cccccccceecccc-hhhhhHHHHhhcCccceeeccccCCCcchhhhhhhhccCCceeEEEecccccccCccccce
Confidence 5 46777777765433 3344455556667777777766666678888899999999999999999999999998776
Q ss_pred HHHhhhcCCEEEEecccccCcccccCCCCCccEEEEcccc-ccCCCceEEEEEecCCCCccccccccCCc-----cccCC
Q psy15216 1555 GELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGH-----EYGLR 1628 (2602)
Q Consensus 1555 ~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K-~~gp~G~G~l~~~~~~~~~l~~~~~g~~~-----~~~~~ 1628 (2602)
. ++.+++.+++|++++.+..+++.. ++|++++|+|| +++|+|+|+++.++...+........+.. .....
T Consensus 161 ~--~~~~~~~v~vDa~~~~~~~~vd~~--~~dv~~~ss~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (360)
T d1bjna_ 161 P--DFGADVVVAADFSSTILSRPIDVS--RYGVIYAGAQKNIGPAGLTIVIVREDLLGKANIACPSILDYSILNDNGSMF 236 (360)
T ss_dssp C--CCCTTCCEEEECTTTTTSSCCCGG--GCSEEEEETTTTTSSTTCEEEEEEGGGCSCCCTTSCGGGCHHHHHHTTTCS
T ss_pred e--cccccceeeeeeeccccceeeeec--cceeEEEEcccccccCCCceeEeeehhhhhccccCCcchhhHHHHhhhhhc
Confidence 3 577899999999999998877664 57999999999 56677788888877655443322221111 11122
Q ss_pred CCCcchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEec-CCcHHHHHhc
Q psy15216 1629 SGTLATHQIVGMGEAFRLAR-IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGESLLMAI 1706 (2602)
Q Consensus 1629 ~gt~~~~~~~al~~aL~~~~-~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~L 1706 (2602)
..++......+...++.... .+.+...++.......+...+.. .........+..+++..+.|.++. .+...+...|
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~rs~~v~~f~~~~~~~~~~~~~~l 315 (360)
T d1bjna_ 237 NTPPTFAWYLSGLVFKWLKANGGVAEMDKINQQKAELLYGVIDN-SDFYRNDVAKRNRSRMNVPFQLADSALDKLFLEES 315 (360)
T ss_dssp SCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH-CSSEECCBCGGGBCSSEEEEEESSGGGHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhc-cccccccCCcccccceEEEEEcCCcccHHHHHHHH
Confidence 22333333333333333333 23455566666666666666555 445544444555666777777763 4455666666
Q ss_pred --CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1707 --KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1707 --~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
+||.++.|..+. +.+|+|++.++|.|||++++++|++
T Consensus 316 ~~~Gi~~~~G~~~~---------------------g~~Ris~~~~~t~edV~~li~~l~e 354 (360)
T d1bjna_ 316 FAAGLHALKGHRVV---------------------GGMRASIYNAMPLEGVKALTDFMVE 354 (360)
T ss_dssp HHTTEECCBCCTTT---------------------CSEEEECCTTSCHHHHHHHHHHHHH
T ss_pred HHCCCEeecCCCcc---------------------CeEEEEecCCCCHHHHHHHHHHHHH
Confidence 899988775332 3499999999999999999999997
|
| >d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus alcalophilus [TaxId: 1445]
Probab=99.78 E-value=2.2e-18 Score=218.93 Aligned_cols=336 Identities=11% Similarity=0.008 Sum_probs=221.6
Q ss_pred ccCCCCCCCHHHHHHHHHHHhhccCCC---CCccchhHHHHHHHHHHHHHHHHHHhCCCCC-cEEEeCCHHHHHHHHHHh
Q psy15216 1398 FKDATTPIDPRVVDKMIPYLRVQFGNP---ASRNHIYGWTAEKAIEKARNEVAQLIYADPR-EIIWTSGATESNNLAIKG 1473 (2602)
Q Consensus 1398 L~~~~~~~~~~v~eal~~~l~~~~~np---~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~-~iv~t~gaT~al~~al~~ 1473 (2602)
+++...+.|+++++++.+.+-+..+.+ ....|+ +..+...++++|+.++++++++.+ .|++++|++++++.+...
T Consensus 7 F~pGP~~~p~~V~~a~~~~~~~~~~~~~~~~~~sHR-s~~~~~~~~~~r~~l~~l~~~~~~~~i~~~~gt~~~~~~~~~~ 85 (360)
T d1w23a_ 7 FNAGPSALPKPALERAQKELLNFNDTQMSVMELSHR-SQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQFTMLPM 85 (360)
T ss_dssp CCSSSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTT-SHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHH
T ss_pred eCCCCcCCCHHHHHHHHHHHHhhcccCccccccCcC-CHHHHHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHh
Confidence 345667889999999999775432111 111233 677888999999999999999655 478888888888777666
Q ss_pred hhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccCCceEEEEeccccccccccChHH
Q psy15216 1474 AAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILE 1553 (2602)
Q Consensus 1474 l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~ 1553 (2602)
.. ..+++.+++....+.+ ..++..+...+...............++.+++..... .++|.+|.||...|+++
T Consensus 86 ~~---~~~~~~v~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~tg~~~~~~~ 157 (360)
T d1w23a_ 86 NL---LTKGTIGNYVLTGSWS-EKALKEAKLLGETHIAASTKANSYQSIPDFSEFQLNE----NDAYLHITSNNTIYGTQ 157 (360)
T ss_dssp HH---CCTTCEEEEEECSHHH-HHHHHHHHTTSEEEEEEECGGGTSCSCCCGGGCCCCT----TEEEEEEESEETTTTEE
T ss_pred hh---cccCcccceeeccchh-hhhHHHHHHhhhcceeeccccccccchhhhhhccccc----ccceeEecCCcccccee
Confidence 65 4778888887655554 4556666666777666655443334445554444333 35677888999999999
Q ss_pred HHHHhhhcCCEEEEecccccCcccccCCCCCccEEEEccccccCCCceEEEEEecCCCCccccccccCCc----cccCCC
Q psy15216 1554 IGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGH----EYGLRS 1629 (2602)
Q Consensus 1554 I~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K~~gp~G~G~l~~~~~~~~~l~~~~~g~~~----~~~~~~ 1629 (2602)
|.++|+++|+++++|++|++|+.++++.++++|+++++.||+++| |.|+++.++...+...+...++.. ......
T Consensus 158 i~~~~~~~g~l~ivDavqs~g~~~id~~~~~vd~~~~~~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (360)
T d1w23a_ 158 YQNFPEINHAPLIADMSSDILSRPLKVNQFGMIYAGAQKNLGPSG-VTVVIVKKDLLNTKVEQVPTMLQYATHIKSDSLY 236 (360)
T ss_dssp CSSCCCCCSSCEEEECTTTTTSSCCCGGGCSEEEEETTTTTSCTT-CEEEEEEHHHHCSCCTTCCGGGCHHHHHHTTTCS
T ss_pred eeeccccceeeEEeeccccccccccccccccceEEeeccccccCC-cceeeEechhhhcccccCCcchhhhhhhhhhhhc
Confidence 999999999999999999999999999999999988887775444 567777765444333222111111 111223
Q ss_pred CCcchhHHHHHHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEec-CCcHHHHHhc
Q psy15216 1630 GTLATHQIVGMGEAFRLA-RI-EMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGESLLMAI 1706 (2602)
Q Consensus 1630 gt~~~~~~~al~~aL~~~-~~-~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~L 1706 (2602)
.++......+...++... .. .......+....+...................+..+++..+.|.++. .....+...|
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rS~~vvsf~i~~~~~~~~~~~~l 316 (360)
T d1w23a_ 237 NTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGHAEKGSRSLMNVTFNLRNEELNQQFLAKA 316 (360)
T ss_dssp SCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTSSEESSCGGGBCSSEEEEECSSHHHHHHHHHHH
T ss_pred ccccceeeechhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhcccccccCCChhhcceeEEEEEcCCCccHHHHHHHH
Confidence 355555554444444422 22 22333344444444444444432223344444455566656665542 3335666656
Q ss_pred --CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1707 --KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1707 --~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
+||.++.|..|. +.+|+|+..++|.|||++|++.|++
T Consensus 317 ~~~GI~~~~G~~~~---------------------ggiRiS~~~~~t~e~V~~Li~~~~~ 355 (360)
T d1w23a_ 317 KEQGFVGLNGHRSV---------------------GGCRASIYNAVPIDACIALRELMIQ 355 (360)
T ss_dssp HHTTEESCBCCTTT---------------------CSEEEECCTTSCHHHHHHHHHHHHH
T ss_pred HHCCCeeeeCCCcc---------------------CcEEEEeeCCCCHHHHHHHHHHHHH
Confidence 899998886553 3499999888999999999999997
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Probab=99.78 E-value=1.8e-18 Score=222.94 Aligned_cols=293 Identities=14% Similarity=0.104 Sum_probs=201.8
Q ss_pred HHHHHHHHHHHh----C--CCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEe
Q psy15216 1439 IEKARNEVAQLI----Y--ADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYL 1512 (2602)
Q Consensus 1439 ~~~lr~~ia~~~----g--~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v 1512 (2602)
..++|+++++++ | +++++|++|+|+++++..++.++. ++||+|++++|.|+.+...+..+ |++++.+
T Consensus 73 ~~~lR~aia~~l~~~~g~~~~~~~I~it~G~~~al~~~~~~l~----~~gd~v~~~~P~y~~~~~~~~~~---g~~~~~v 145 (403)
T d1wsta1 73 FTPLRLALARWMEKRYDIPMSKVEIMTVAGSQQALDLIGRVFL----NPGDPIVVEAPTYLAAIQAFKYY---DPEFISI 145 (403)
T ss_dssp CHHHHHHHHHHHHHHHCCCCTTCEEEEESSHHHHHHHHHHHHC----CTTCEEEEEESCCHHHHHHHHTT---CCEEEEE
T ss_pred CHHHHHHHHHHHHHHhCCCCChHHeeecccchHHHHHHHHHHh----hcCCccccCCCcchhhhHHHhhc---cccceeE
Confidence 456777777765 3 578899999999999999999987 89999999999999988777655 9999999
Q ss_pred ccCCCCC--cCh----hHHHhhccCCceEEEEeccccccccccC---hHHHHHHhhhcCCEEEEecccccC----c--cc
Q psy15216 1513 KPKNNGL--ITL----SQLEEKICSDTILVSVMLVNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQAVG----K--ID 1577 (2602)
Q Consensus 1513 ~~~~~~~--id~----d~l~~~i~~~t~lv~l~~~~n~tG~~~~---l~~I~~ia~~~gi~vivD~a~~~g----~--~~ 1577 (2602)
+.+..+. ... +...+..++.+.++++++|+||||.+++ +++|+++|++||+++|+|++|..- . .+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~l~~i~~~a~~~~~~li~De~y~~l~~~~~~~~~ 225 (403)
T d1wsta1 146 PLDDKGMRVDLLEEKLEELRKQGKRVKIVYTVSTFQNPAGVTMSVDRRKKLLELANEYDFLIVEDGPYSELRYSGEPTPP 225 (403)
T ss_dssp EEETTEECHHHHHHHHHHHHHTTCCCCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCC
T ss_pred eecccCCccccccccchhhhhccccccccccccccCCCCCccCCHHHHHHHHHHHHhcCceeccccchhheecCCCCCCc
Confidence 8765432 111 1223333456778999999999999999 568888999999999999998531 1 11
Q ss_pred c-cCCCCCccEEEEccccccCCCc--eEEEEEecCCCCccccccccCCccccCCCCCcchhHHHHHHHHHH--HHHHHHH
Q psy15216 1578 I-NIQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFR--LARIEMK 1652 (2602)
Q Consensus 1578 ~-~l~~~~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~--~~~~~~~ 1652 (2602)
+ .....+..+++.|++|.++ +| +||+++++++++.+..... ......+.....+..+.+. .....+.
T Consensus 226 ~~~~~~~~~~i~~~S~SK~~~-~G~RiG~~i~~~~~i~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (403)
T d1wsta1 226 IKHFDDYGRVIYLGTFSKILA-PGFRIGWVAAHPHLIRKMEIAKQ-------SIDLCTNTFGQAIAWKYVENGYLDEHIP 297 (403)
T ss_dssp GGGGCSSSCEEEEEESTTTTC-GGGCCEEEEECHHHHHHHHHHHH-------HHHSSCCHHHHHHHHHHHHTTHHHHHHH
T ss_pred ccccCCCCcEEEEccccceec-CcccccccccchHHHHHHHHHHh-------hhccccccchhhhHHhhhhccccchhHH
Confidence 1 1223445688889999665 45 8999998876655433211 1112344444443433333 3444567
Q ss_pred HHHHHHHHHHHHHHHHHhhcC-CcEEEeCCCCCCCCceEEEEEec-CCcHHHHHhc--CCEEEccccccCCCCCChhHHH
Q psy15216 1653 EELKRILFLQKRLYNGLMESI-EEIYINGDMNNRIPHNLNISFNF-IEGESLLMAI--KDIAVSSGSACTSASLEPSYVL 1728 (2602)
Q Consensus 1653 ~~~~~~~~l~~~l~~~L~~~~-~gl~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~ 1728 (2602)
+.++.+...++.+.+.|.+.. .++....|... ....+.++. .+...+...| +||.+.||+.|...
T Consensus 298 ~~~~~~~~~~~~~~~~L~~~~~~~~~~~~p~gg---~~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~f~~~-------- 366 (403)
T d1wsta1 298 KIIEFYKPRRDAMLEALEEYMPEGVEWTKPEGG---MFVRVTLPEGIDTKLMMERAVAKGVAYVPGEAFFVH-------- 366 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCTTCEECCCSBS---SEEEEECCTTCCTTTTHHHHHHTTEECEEGGGGSTT--------
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCeEEeCCCce---eEEEEECCCCCCHHHHHHHHHHCCEEEEechhhcCC--------
Confidence 777888888888888887633 24555433221 223334442 3455555555 89999999888643
Q ss_pred HHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1729 RALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1729 ~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
....+++||+++. .++++++.++++|++.
T Consensus 367 -------~~~~~~iRi~~~~-~~~~~l~~al~rl~~~ 395 (403)
T d1wsta1 367 -------RDKKNTMRLNFTY-VPEETIREGVRRLAET 395 (403)
T ss_dssp -------CCCCSEEEEECSS-SCHHHHHHHHHHHHHH
T ss_pred -------CCCCCEEEEEecC-CCHHHHHHHHHHHHHH
Confidence 0123899999864 4789999999999873
|
| >d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Prokaryotic actin homolog MreB species: Thermotoga maritima [TaxId: 2336]
Probab=99.78 E-value=4.5e-19 Score=189.89 Aligned_cols=133 Identities=28% Similarity=0.360 Sum_probs=102.6
Q ss_pred EEEEEcCcccEEEEEEECCeeEEEeCCCCCccccEEEEEec-CC-cEEEcHHHHhhhccCCCCchhhhhhhhCCCCCCCC
Q psy15216 639 SIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLP-DG-KIYVGKKAKITQNIDPKNTISSIKRFIARDLKNIN 716 (2602)
Q Consensus 639 vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~v~~~~-~~-~~~vG~~A~~~~~~~p~~~~~~~K~~lg~~~~~~~ 716 (2602)
.||||||||||+||+..++ .++. .|+.+++.. .+ .+.+|..|++....+|.+. ...|++
T Consensus 2 ~iGIDlGTtns~va~~~~~--~v~~-------~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~-~~~k~~--------- 62 (137)
T d1jcea1 2 DIGIDLGTANTLVFLRGKG--IVVN-------EPSVIAIDSTTGEILKVGLEAKNMIGKTPATI-KAIRPM--------- 62 (137)
T ss_dssp EEEEEECSSEEEEEETTTE--EEEE-------EESCEEEETTTCCEEEESHHHHTTTTCCCTTE-EEECCE---------
T ss_pred eEEEEcChhhEEEEEeCCC--EEee-------cCCcceEecCCCeEEEEehHHhhhhhhccccc-eeEEec---------
Confidence 4899999999999875443 3332 255555543 23 3557777766655544433 222221
Q ss_pred CCCCCeeeecCCCceEEEEeCceeCHHHHHHHHHHHHHHHHHHhhcCccceEEEEEcCCCCHHHHHHHHHHHHHcCCceE
Q psy15216 717 TNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVL 796 (2602)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~~~~Aa~~AGl~~~ 796 (2602)
.+..+++.+..++++++++..++...+..+.++|||||++|++.||++|++||+.|||+++
T Consensus 63 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VItVPa~f~~~qR~at~~Aa~~AGl~vv 123 (137)
T d1jcea1 63 -------------------RDGVIADYTVALVMLRYFINKAKGGMNLFKPRVVIGVPIGITDVERRAILDAGLEAGASKV 123 (137)
T ss_dssp -------------------ETTEESSHHHHHHHHHHHHHHHHTSCCSCCCEEEEEECTTCCHHHHHHHHHHHHHTTCSEE
T ss_pred -------------------cCCccCcHHHHHHHHHHHHHHHHhhcCccccceEEEeecccCHHHHHHHHHHHHHcCCCEE
Confidence 2345678899999999999999999999999999999999999999999999999999999
Q ss_pred EEechhHHHHHHh
Q psy15216 797 RLLNEPTSAAIAY 809 (2602)
Q Consensus 797 ~li~EPtAAAl~y 809 (2602)
+||+||+|||+..
T Consensus 124 ~li~EPtAAAiGa 136 (137)
T d1jcea1 124 FLIEEPMAAAIGS 136 (137)
T ss_dssp EEEEHHHHHHHHT
T ss_pred EEeCCHHHHHhCC
Confidence 9999999999853
|
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.77 E-value=1.5e-17 Score=214.69 Aligned_cols=310 Identities=15% Similarity=0.153 Sum_probs=221.0
Q ss_pred CcchhhhHHHHHHHHHHHHHHHhCCCC---------CcEEEeCCHHHHHHHHHHhccccccc---------------CCC
Q psy15216 32 NHIYGWTAEKAIEKARNEVAQLIYADP---------REIIWTSGATESNNLAIKGAAHFYKK---------------RGK 87 (2602)
Q Consensus 32 ~~~~~~~~~~~~~~~r~~lA~~~g~~~---------~~Iv~t~g~T~al~~~~~~l~~~~~~---------------~gd 87 (2602)
.+..+.....+..++-+++++++|.+. ...++|+|+|+|+..++.+....... +.-
T Consensus 104 ~~~~sp~~t~iE~~v~~wl~~l~g~p~~~~~~~~~~~~G~~~~Ggs~anl~al~~AR~~~~~~~~~~~~g~~~~~~~~~~ 183 (476)
T d1js3a_ 104 SWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKL 183 (476)
T ss_dssp SGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHE
T ss_pred chhhhhhHHHHHHHHHHHHHHHhCCCcccccCCCCCCCceECCcHHHHHHHHHHHHHHHHHHhhcccccCcccccccCce
Confidence 355666777788889999999999853 24789999999999999877643210 123
Q ss_pred EEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccCC------ceEEEEecccCcccccccHHHHHHH
Q psy15216 88 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSD------TILVSVMLVNNEIGVIQPILEIGEL 161 (2602)
Q Consensus 88 ~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~~------tklv~i~~~~npTG~~~~l~~I~~l 161 (2602)
.|++++..|.|+..++..+ |..++.+++++++.+|+++|++.|++. +-+|+.+.+++.||.+.|+++|+++
T Consensus 184 vv~~s~~~H~Si~ka~~~l---Gl~~~~v~~d~~~~md~~~L~~~i~~~~~~g~~p~~VvataGtt~~G~iDpl~~I~~i 260 (476)
T d1js3a_ 184 VAYASDQAHSSVERAGLIG---GVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPI 260 (476)
T ss_dssp EEEEETTCCHHHHHHHHHH---TCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHH
T ss_pred EEEecccccHHHHHHHHhc---CceEEEeccCCCCCcCHHHHHHHHHHHHhcCCCcEEEeecCCCccceeeccHHHHHHH
Confidence 6899999999999999988 999999999999999999999999643 4589999999999999999999999
Q ss_pred HHhcCCEEEEecccccccccccC-----CCC-CccEEEecccc-ccCCCCcEEEEEecCCC--Cc--ccceec-----CC
Q psy15216 162 CRSKGVIFHCDAAQAVGKIDINI-----QNY-KVDLMSFSAHK-IYGPKGIGALYIRRNPR--TR--IEAQIH-----GG 225 (2602)
Q Consensus 162 a~~~g~~livD~a~a~g~~~~dl-----~~~-~~D~~~~S~~K-~~Gp~G~G~l~~~~~~~--~~--l~~~~~-----g~ 225 (2602)
|++||+|+|||+|++......+- ... .+|.++.++|| ++.|.++|++++++... .. ..+.+. +.
T Consensus 261 ~~~~~~wlHVDAA~Gg~~~~~~~~~~~~~gi~~aDSit~d~HK~l~~P~~~g~~l~r~~~~~~~~~~~~~~~~~~~~~~~ 340 (476)
T d1js3a_ 261 CHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGS 340 (476)
T ss_dssp HHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESCHHHHHGGGC------------C
T ss_pred HHhcCcEEEEecccchhhhhhcchhhhhcCCcccceeeecCccccccCCcceeecccchHHHHHHHhcChhhhccccccc
Confidence 99999999999998766544321 111 47999999999 55688899999986311 00 111110 00
Q ss_pred Ccccc---c-cccCcchhHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc
Q psy15216 226 GHEYG---L-RSGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF 300 (2602)
Q Consensus 226 ~~~~~---~-~~gt~~~~~~~al~~al~-~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~ 300 (2602)
..... + ..++... ..+.++.+++ +...++.+++++..++++++.+.+.+ .|+++++.++.. ++++|.+..
T Consensus 341 ~~~~~~~~~~~~~sr~~-~al~lw~~l~~~G~~g~~~~i~~~~~lA~~l~~~l~~-~~~fel~~~p~l---~iV~Fr~~~ 415 (476)
T d1js3a_ 341 GLITDYRHWQLPLGRRF-RSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQ-DPRFEVCAEVTL---GLVCFRLKG 415 (476)
T ss_dssp CSCCCGGGSSSCSCCCC-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CTTEEECSCCCS---SEEEEEESS
T ss_pred cccccccccccccchhh-HHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhc-CCCeEEECCCce---EEEEEEccC
Confidence 00000 0 1122332 2344566676 55678999999999999999999988 799999876543 445566543
Q ss_pred cCh--hHHHHHh--CC-eEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecC-CCCCHHHHHHHHHHHHhh
Q psy15216 301 IEG--ESLLMAI--KD-IAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIG-RFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 301 ~~~--~~~~~~L--~g-I~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~-~~~t~edid~li~~L~~~ 369 (2602)
.+. ..+++.+ .| +.+.+.. + . ...++|++++ +.++++||+.+++.|++.
T Consensus 416 ~d~~n~~l~~~l~~~G~~~~s~t~---------------~--~---g~~~lR~~i~n~~Tt~~did~~~~~i~~~ 470 (476)
T d1js3a_ 416 SDGLNEALLERINSARKIHLVPCR---------------L--R---GQFVLRFAICSRKVESGHVRLAWEHIRGL 470 (476)
T ss_dssp CHHHHHHHHHHHHHHTSCBCEEEE---------------E--T---TEEEEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhcCCEEEeeee---------------E--C---CEEEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 322 2344444 12 2221100 0 0 1247999986 778999999999999974
|
| >d1wfza_ d.224.1.2 (A:) Iron-sulfur cluster protein U (IscU) {Mouse (Mus musculus), mitochondrial [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: SufE/NifU superfamily: SufE/NifU family: NifU/IscU domain domain: Iron-sulfur cluster protein U (IscU) species: Mouse (Mus musculus), mitochondrial [TaxId: 10090]
Probab=99.77 E-value=1.3e-19 Score=184.28 Aligned_cols=88 Identities=73% Similarity=1.160 Sum_probs=82.3
Q ss_pred cccCCCCCCCCCCCCCcceeeeeCCCCcccEEEEEEEEcCCCceEeeeeeccccchhHhhHHHHHHHHcCCChhhhhhcc
Q psy15216 382 HYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKTYGCGSAIASSSLVTEWVKGKTLDEAMSIK 461 (2602)
Q Consensus 382 hy~~p~n~g~~~~~~~~~~~~~~~~~~cgd~~~~~~~~~~~~~i~~~~~~~~gc~~~~a~~s~~~~~~~g~~~~e~~~i~ 461 (2602)
...||||+|.|+++|..++.|+.+||.|||.|+|||+|+++|+|+|++|+++||++++||+||++|+++|||++|+..|+
T Consensus 6 ~gkNPrn~G~l~~~d~~~~~g~~gNP~CGD~i~i~l~v~~~~~I~di~F~~~GC~is~AsaS~~tel~~Gkt~~ea~~i~ 85 (130)
T d1wfza_ 6 SGENPRNVGSLDKTSKNVGTGLVGAPACGDVMKLQIQVDEKGKIVDARFKTFGCGSAIASSSLATEWVKGKTVEEALTIK 85 (130)
T ss_dssp CCSCCSSCCCCCTTCSSEEEEEEEETTTTEEEEEEEEECSSSBEEEEEEECCSCHHHHHHHHHHHHHHTTSBHHHHHHCC
T ss_pred CCCCCCCCcCCCCCCcccCccccCCCCcCcEEEEEEEecCCCeEEEEEEEeeCCchhHHHHHHHHHHHhccCHHHHHhcC
Confidence 35799999999999988889999999999999999999777899999999999999999999999999999999999999
Q ss_pred ccchhhhh
Q psy15216 462 NTDIAEEL 469 (2602)
Q Consensus 462 ~~~i~~~l 469 (2602)
+.++.+.+
T Consensus 86 ~~~i~~~l 93 (130)
T d1wfza_ 86 NTDIAKEL 93 (130)
T ss_dssp HHHHHHHH
T ss_pred cHHHHHHc
Confidence 88876654
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Probab=99.77 E-value=1.6e-18 Score=224.45 Aligned_cols=291 Identities=14% Similarity=0.101 Sum_probs=195.1
Q ss_pred HHHHHHHHHHHh----C---CCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEE
Q psy15216 1439 IEKARNEVAQLI----Y---ADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTY 1511 (2602)
Q Consensus 1439 ~~~lr~~ia~~~----g---~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~ 1511 (2602)
..++|++|++++ | +++++|++|+|+++|+.+++.++. ++||+|++++|.|+.+...++.+ |++++.
T Consensus 82 ~~~LR~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~~~----~~Gd~Vlv~~P~y~~~~~~~~~~---g~~~~~ 154 (420)
T d1vp4a_ 82 DPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFL----DDESYCVLDDPAYLGAINAFRQY---LANFVV 154 (420)
T ss_dssp CHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHHHHHHHHHHHC----CTTCEEEEEESCCHHHHHHHHTT---TCEEEE
T ss_pred CHHHHHHHHHHHHHHhCCCCCCHHHeEeccchhhhHHHHHHhhh----ccccccccccccccchhHHHHHH---hhhccc
Confidence 355666666654 4 477899999999999999999987 89999999999999987766555 999999
Q ss_pred eccCCCCCcChhHHHhhc---------cCCceEEEEeccccccccccC---hHHHHHHhhhcCCEEEEecccccCcc---
Q psy15216 1512 LKPKNNGLITLSQLEEKI---------CSDTILVSVMLVNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQAVGKI--- 1576 (2602)
Q Consensus 1512 v~~~~~~~id~d~l~~~i---------~~~t~lv~l~~~~n~tG~~~~---l~~I~~ia~~~gi~vivD~a~~~g~~--- 1576 (2602)
++.++.+ +|++.+...+ ++.+.++++++|+||||.+++ +++|+++|++|++++|+|++++.-..
T Consensus 155 ~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~ 233 (420)
T d1vp4a_ 155 VPLEDDG-MDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGE 233 (420)
T ss_dssp EEEETTE-ECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSC
T ss_pred ccccccc-cccchhhhhhhhhHHHhhccccceeeEecCCCCccchhhhhhhhhhhhhhhhcccccccccchhhhccccCc
Confidence 9987643 6777665443 233457778999999999998 67899999999999999999763211
Q ss_pred ---cc-cCCCCCccEEEEccccccCCCc--eEEEEEecCCCCccccccccCCccccCCCCCcchhHHHHHHHHHH--HHH
Q psy15216 1577 ---DI-NIQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFR--LAR 1648 (2602)
Q Consensus 1577 ---~~-~l~~~~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~--~~~ 1648 (2602)
+. .....+..+++.|++|+++ +| +||+++++++++.+..... ....+++.. .+.++...+. ...
T Consensus 234 ~~~~~~~~~~~~~~i~~~s~sk~~~-~G~RiG~~~~~~~~i~~l~~~~~------~~~~~~~~~-~q~~~a~~l~~~~~~ 305 (420)
T d1vp4a_ 234 TVDPIFKIGGPERVVLLNTFSKVLA-PGLRIGMVAGSKEFIRKIVQAKQ------SADLCSPAI-THRLAARYLERYDLL 305 (420)
T ss_dssp CCCCHHHHHCTTTEEEEEESTTTTC-GGGCEEEEECCHHHHHHHHHHHH------HHHSSCCHH-HHHHHHHHHHHSCHH
T ss_pred ccccccccccccceeEEeccccccc-cccccccccccchhhhhhhhhhh------hccccCchh-hhhhhhhhccccccc
Confidence 00 1112233466667777654 45 8999998877666543321 111223333 3333334443 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc---CCcEEEeCCCCCCCCceEEEEEec-CCcHHHHHhc--CCEEEccccccCCCCC
Q psy15216 1649 IEMKEELKRILFLQKRLYNGLMES---IEEIYINGDMNNRIPHNLNISFNF-IEGESLLMAI--KDIAVSSGSACTSASL 1722 (2602)
Q Consensus 1649 ~~~~~~~~~~~~l~~~l~~~L~~~---~~gl~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~L--~gI~v~~g~~~~~~~~ 1722 (2602)
..+.+.++++++.++.+++.|.+. ++|+.+..|... ....+.++. .+..++...| +||.+.||..|...
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~L~~~~~~~~g~~~~~p~gg---~f~~~~~~~~~d~~~~~~~l~~~gV~v~PG~~F~~~-- 380 (420)
T d1vp4a_ 306 EQLKPTIELYRRKRTVMLNALEEYFSDIPGVKWVKSEGG---LFIWLTLPEGFDTWEMFEYAKRKKVFYVPGRVFKVY-- 380 (420)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHSTTSTTCEECCCSBS---SEEEEECCTTCCTTTTHHHHHHHTEECEEGGGGCTT--
T ss_pred ccchhHHHHhhhhcccchhhhhhhhccCCCcEEecCCce---EEEEEECCCCCCHHHHHHHHHHCCeEEEechhhCCC--
Confidence 334455555666666666665542 467777644322 122333432 3455565555 79999999988643
Q ss_pred ChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1723 EPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1723 ~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
....+++|||++. .+.++++.++++|++
T Consensus 381 -------------~~~~~~iRls~~~-~~~e~l~~a~~rL~~ 408 (420)
T d1vp4a_ 381 -------------DEPSPSMRLSFCL-PPDEKIVEGIKRLRE 408 (420)
T ss_dssp -------------CCCCSEEEEECSS-SCHHHHHHHHHHHHH
T ss_pred -------------CCCCCEEEEEeCc-CCHHHHHHHHHHHHH
Confidence 1124799999864 477899999999987
|
| >d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Ornithine decarboxylase major domain domain: Ornithine decarboxylase major domain species: Lactobacillus sp., strain 30a [TaxId: 1591]
Probab=99.76 E-value=2.2e-18 Score=225.96 Aligned_cols=321 Identities=12% Similarity=0.019 Sum_probs=205.9
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHH-HHHHhhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccC
Q psy15216 1437 KAIEKARNEVAQLIYADPREIIWTSGATESNN-LAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK 1515 (2602)
Q Consensus 1437 ~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~-~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~ 1515 (2602)
..+.++++.+|+++|++ +.+|++|+|++.+ .++.++. +|||+|+++..+|.|+...+..+...+..+..++.+
T Consensus 66 ~~i~eae~~~A~~~ga~--~a~f~~~Gtt~~n~a~i~a~~----~~gd~Vi~~~~~H~Sv~~~~~~l~~~~~~~~~~~~~ 139 (462)
T d1c4ka2 66 GPAVAAEKHAARVYNAD--KTYFVLGGSSNANNTVTSALV----SNGDLVLFDRNNHKSVYNSALAMAGGRPVYLQTNRN 139 (462)
T ss_dssp THHHHHHHHHHHHTTCS--EEEEESSHHHHHHHHHHHHHC----CTTCEEEEETTCCHHHHHHHTTTTCCEEEEECEEEC
T ss_pred HHHHHHHHHHHHHhCCC--eEEEECCchHHHHHHHHHHhc----CCCCeEEecccchHHHHHHHHHHhcCCceeeecccc
Confidence 35788999999999975 6777776666555 4466555 899999999999999887776664334444444555
Q ss_pred CCCC--------cChh---------HHHhhccCCceEEEEeccccccccccChHHHHHHhhhcCCEEEEecccccCcccc
Q psy15216 1516 NNGL--------ITLS---------QLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDI 1578 (2602)
Q Consensus 1516 ~~~~--------id~d---------~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~~ia~~~gi~vivD~a~~~g~~~~ 1578 (2602)
+.+. ++.+ ++++++.+++.++++.+.+|..|.+.|+++|+++|++||+++++|+||+++....
T Consensus 140 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~G~~~dl~~I~~ia~~~g~~l~vD~A~~~~~~~~ 219 (462)
T d1c4ka2 140 PYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFI 219 (462)
T ss_dssp TTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEECHHHHHHHHGGGBSEEEEECTTCCGGGSS
T ss_pred cccccCCCChHHhhHHHHHhhhhhhcHHhhhccCCceeEEEEeeeeccchhhHHHHHHHHHHcCCEEEEechhhcccccc
Confidence 4432 2222 3445566778888888889999999999999999999999999999998876543
Q ss_pred cC-------------CCCCccEEEEccccccC-CCceEEEEEecCCCCccccccccC---CccccCCCCCcchhHHHHHH
Q psy15216 1579 NI-------------QNYKVDLMSFSAHKIYG-PKGIGALYIRRNPRTRIEAQIHGG---GHEYGLRSGTLATHQIVGMG 1641 (2602)
Q Consensus 1579 ~l-------------~~~~~D~~v~S~~K~~g-p~G~G~l~~~~~~~~~l~~~~~g~---~~~~~~~~gt~~~~~~~al~ 1641 (2602)
+. ...++|++++|+||.+| +.|.+++..++..+.......... .....+..+++++..+.++.
T Consensus 220 ~~~~~~~~~~g~~~~~~~~~D~~~~S~HK~lg~~~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~t~sp~~~~~asl~ 299 (462)
T d1c4ka2 220 PMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSPFYPMYAALD 299 (462)
T ss_dssp GGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCTTCEEEEEECGGGTTSTTCCCHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred CcCCcchhhccccccccCCccEEEEecCcccccccceEEEEeccccccccchhhhHHHHHHhhhhcccCCchHHHHHHHH
Confidence 32 12346999999999665 555566666654443221110000 00123567788999999998
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCC----------------------CCceEEEEEecCC
Q psy15216 1642 EAFRLAR-IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNR----------------------IPHNLNISFNFIE 1698 (2602)
Q Consensus 1642 ~aL~~~~-~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~----------------------~~~~~~~~~~~~~ 1698 (2602)
.|..+.. ....+..++..++++++++++.+ +.+.......... .+......+....
T Consensus 300 ~a~~~~~~~~g~~l~~~~~~~a~~~r~~l~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (462)
T d1c4ka2 300 VNAAMQEGEAGRKLWHDLLITTIEARKKLIK-AGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWRFEKGAKWHAYEGYG 378 (462)
T ss_dssp HHHHHHSHHHHHHHHHHHHHHHHHHHHHHHH-TTCSSEESSCSEETTEEGGGSCHHHHTTCGGGGBCCTTCTTTCCTTCC
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-hhhhhhcccccccccccccccchHhhhcccchhccCCcchhccccccC
Confidence 8887554 34677778888889999999987 4333221110000 0000000011000
Q ss_pred cHH-------HHHhcCCEEEccccccCCCC--CChhHHHHHcCCCcccc-CCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1699 GES-------LLMAIKDIAVSSGSACTSAS--LEPSYVLRALGCNDELA-HSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1699 ~~~-------~~~~L~gI~v~~g~~~~~~~--~~~~~~~~~~~~~~~~~-~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
... +.-...++.+..|..|..+. ...+..+...|+..+.. .+.||++++.++|++|+|+++++|++
T Consensus 379 ~~~~~~Dp~k~~l~~~gi~~~~g~~~~~G~~~~~~~~~L~~~gI~~e~~~~~~i~~~~s~~~T~edid~li~aL~e 454 (462)
T d1c4ka2 379 DNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDHGIIPEKSDLNSILFLMTPAETPAKMNNLITQLLQ 454 (462)
T ss_dssp TTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHHTTCCCSEECSSEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred ccceecccceeEEecCCccccccchhhcCCcHHHHHHHHHHcCCeeeccCCCeEEEEecCCCCHHHHHHHHHHHHH
Confidence 000 00001355555555554321 11123445567654433 47899999999999999999999997
|
| >d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Ornithine decarboxylase major domain domain: Ornithine decarboxylase major domain species: Lactobacillus sp., strain 30a [TaxId: 1591]
Probab=99.76 E-value=2.4e-18 Score=225.77 Aligned_cols=322 Identities=12% Similarity=0.020 Sum_probs=206.9
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEeCCH-HHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccC
Q psy15216 41 KAIEKARNEVAQLIYADPREIIWTSGA-TESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK 119 (2602)
Q Consensus 41 ~~~~~~r~~lA~~~g~~~~~Iv~t~g~-T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~ 119 (2602)
..+.++++.+|+++|++ +.+|++|+ |.++.+++.++. +|||+|+++..+|.|+...+..+...+..+..++.+
T Consensus 66 ~~i~eae~~~A~~~ga~--~a~f~~~Gtt~~n~a~i~a~~----~~gd~Vi~~~~~H~Sv~~~~~~l~~~~~~~~~~~~~ 139 (462)
T d1c4ka2 66 GPAVAAEKHAARVYNAD--KTYFVLGGSSNANNTVTSALV----SNGDLVLFDRNNHKSVYNSALAMAGGRPVYLQTNRN 139 (462)
T ss_dssp THHHHHHHHHHHHTTCS--EEEEESSHHHHHHHHHHHHHC----CTTCEEEEETTCCHHHHHHHTTTTCCEEEEECEEEC
T ss_pred HHHHHHHHHHHHHhCCC--eEEEECCchHHHHHHHHHHhc----CCCCeEEecccchHHHHHHHHHHhcCCceeeecccc
Confidence 35788999999999975 55665555 555556666666 899999999999999988776664334444444445
Q ss_pred CCCc--------cChH---------HHHhhccCCceEEEEecccCcccccccHHHHHHHHHhcCCEEEEecccccccccc
Q psy15216 120 NNGL--------ITLS---------QLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDI 182 (2602)
Q Consensus 120 ~~~~--------ld~e---------~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~~g~~livD~a~a~g~~~~ 182 (2602)
+.+. ++.+ ++++++.++++.+++.+.+|..|.+.|+++|+++||+||+++++|+||+.+....
T Consensus 140 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~G~~~dl~~I~~ia~~~g~~l~vD~A~~~~~~~~ 219 (462)
T d1c4ka2 140 PYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFI 219 (462)
T ss_dssp TTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEECHHHHHHHHGGGBSEEEEECTTCCGGGSS
T ss_pred cccccCCCChHHhhHHHHHhhhhhhcHHhhhccCCceeEEEEeeeeccchhhHHHHHHHHHHcCCEEEEechhhcccccc
Confidence 4431 2222 3344556678888888888999999999999999999999999999998776433
Q ss_pred cC-------------CCCCccEEEeccccccCCC-CcEEEEEecCCCCcccceecCC---CccccccccCcchhHHHHHH
Q psy15216 183 NI-------------QNYKVDLMSFSAHKIYGPK-GIGALYIRRNPRTRIEAQIHGG---GHEYGLRSGTLATHQIVGMG 245 (2602)
Q Consensus 183 dl-------------~~~~~D~~~~S~~K~~Gp~-G~G~l~~~~~~~~~l~~~~~g~---~~~~~~~~gt~~~~~~~al~ 245 (2602)
+. ...++|++++|+||++|+. |.+++..+...+.......... .....+..+++++..+.++.
T Consensus 220 ~~~~~~~~~~g~~~~~~~~~D~~~~S~HK~lg~~~~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~t~sp~~~~~asl~ 299 (462)
T d1c4ka2 220 PMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSPFYPMYAALD 299 (462)
T ss_dssp GGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCTTCEEEEEECGGGTTSTTCCCHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred CcCCcchhhccccccccCCccEEEEecCcccccccceEEEEeccccccccchhhhHHHHHHhhhhcccCCchHHHHHHHH
Confidence 22 1234699999999977755 4555666654443222111000 00123456788999999898
Q ss_pred HHHHHHH-HhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCC----------------------CCCceEEEEEcccC
Q psy15216 246 EAFRLAR-IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNN----------------------RIPHNLNISFNFIE 302 (2602)
Q Consensus 246 ~al~~~~-~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~----------------------~~~~~~~~~~~~~~ 302 (2602)
+|..+.. ...++..++..++++++++++.+ +++......... ..+......+....
T Consensus 300 ~a~~~~~~~~g~~l~~~~~~~a~~~r~~l~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (462)
T d1c4ka2 300 VNAAMQEGEAGRKLWHDLLITTIEARKKLIK-AGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWRFEKGAKWHAYEGYG 378 (462)
T ss_dssp HHHHHHSHHHHHHHHHHHHHHHHHHHHHHHH-TTCSSEESSCSEETTEEGGGSCHHHHTTCGGGGBCCTTCTTTCCTTCC
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-hhhhhhcccccccccccccccchHhhhcccchhccCCcchhccccccC
Confidence 8888554 44677788888999999999987 443322111000 00000000011100
Q ss_pred hh-------HHHHHhCCeEEcccccCCCCC--CChHHHHHHcCCCccCC-CCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 303 GE-------SLLMAIKDIAVSSGSACTSAS--LEPSYVLRALGCNDELA-HSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 303 ~~-------~~~~~L~gI~v~~g~~~~~~~--~~~~~~~~~~g~~~~~~-~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
.. .+.-...++.++.+..|..+. ...+..+...|+..+.. .+.||++++.++|++|+|+++++|++.
T Consensus 379 ~~~~~~Dp~k~~l~~~gi~~~~g~~~~~G~~~~~~~~~L~~~gI~~e~~~~~~i~~~~s~~~T~edid~li~aL~ei 455 (462)
T d1c4ka2 379 DNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDHGIIPEKSDLNSILFLMTPAETPAKMNNLITQLLQL 455 (462)
T ss_dssp TTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHHTTCCCSEECSSEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred ccceecccceeEEecCCccccccchhhcCCcHHHHHHHHHHcCCeeeccCCCeEEEEecCCCCHHHHHHHHHHHHHH
Confidence 00 000011455555555554331 12344556678755443 478999999999999999999999974
|
| >d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) species: Escherichia coli [TaxId: 562]
Probab=99.76 E-value=2e-17 Score=209.15 Aligned_cols=317 Identities=13% Similarity=0.098 Sum_probs=228.7
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCC
Q psy15216 1404 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK 1483 (2602)
Q Consensus 1404 ~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd 1483 (2602)
...+.++++..+.++.+...+.. ..........+.++++.|++++|.+ ..++.++++.|+..++.++. .++|
T Consensus 52 ~~~p~v~~a~~~a~~~~G~~~~~--sr~~~g~~~~~~~lE~~LA~~~g~e--~al~~~SG~~an~~~i~al~----~~~d 123 (383)
T d1bs0a_ 52 SHHPQIIRAWQQGAEQFGIGSGG--SGHVSGYSVVHQALEEELAEWLGYS--RALLFISGFAANQAVIAAMM----AKED 123 (383)
T ss_dssp GGCHHHHHHHHHHHHHHCSCCCS--BTTTTCCCHHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHHC----CTTC
T ss_pred CCCHHHHHHHHHHHHHhCCCCCc--cccccCcchHHHHHHHHHHHhcCCC--ceEEecccchhhHHHHHhhc----CCCc
Confidence 45789999999999874322221 2222233457889999999999964 78889999999999999987 8999
Q ss_pred EEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhcc---CCceEEEEeccccccccccChHHHHHHhhh
Q psy15216 1484 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKIC---SDTILVSVMLVNNEIGVIQPILEIGELCRS 1560 (2602)
Q Consensus 1484 ~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~---~~t~lv~l~~~~n~tG~~~~l~~I~~ia~~ 1560 (2602)
.|++....|.+....... .+..++.++- .|++++++.+. +++++|++.++.+++|.+.|+++|.++|++
T Consensus 124 ~v~~d~~~h~si~~g~~~---~~~~~~~~~h-----nd~~~le~~l~~~~~~~~~vv~e~v~s~~G~i~pl~~l~~l~~~ 195 (383)
T d1bs0a_ 124 RIAADRLSHASLLEAASL---SPSQLRRFAH-----NDVTHLARLLASPCPGQQMVVTEGVFSMDGDSAPLAEIQQVTQQ 195 (383)
T ss_dssp EEEEETTCCHHHHHHHHT---SSSEEEEECT-----TCHHHHHHHHHSCCSSCEEEEEESBCTTTCCBCCHHHHHHHHHH
T ss_pred eEEeeccccHHHhhcccc---CCCcceEecc-----hHHHHHHHHhcccCCCceEEEecCCCCCCCcccchhHHHHHHHh
Confidence 999999999998766544 3778877763 37888877764 567899999999999999999999999999
Q ss_pred cCCEEEEecccccCcccccC------CCCCccEEEEccccccCCCceEEEEEecCCCCccccccccCCccccCCCCCcch
Q psy15216 1561 KGVIFHCDAAQAVGKIDINI------QNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLAT 1634 (2602)
Q Consensus 1561 ~gi~vivD~a~~~g~~~~~l------~~~~~D~~v~S~~K~~gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~ 1634 (2602)
||+++++|++|+.|....+. .....++++.++.|.+|..| |++..+.+.++.++..-. ....+...++
T Consensus 196 ~~~~livDeah~~gv~G~~g~G~~~~~~~~~~~~~~t~~ka~g~~G-g~v~~~~~~~~~l~~~~~-----~~~~s~~~~p 269 (383)
T d1bs0a_ 196 HNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGFGVSG-AAVLCSSTVADYLLQFAR-----HLIYSTSMPP 269 (383)
T ss_dssp TTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSSTTSSCC-EEEEECHHHHHHHHHHCH-----HHHSSBCCCH
T ss_pred cCcEEEeecceeeeecCCcccchHHHcCCccccccccccccccccc-cccccchhHHHHHHhhch-----hhhhcccccc
Confidence 99999999999988654322 22346788899999888776 888888766655542210 1112234455
Q ss_pred hHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEec-CCcHHHHHhc--CCEE
Q psy15216 1635 HQIVGMGEAFRLAR-IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGESLLMAI--KDIA 1710 (2602)
Q Consensus 1635 ~~~~al~~aL~~~~-~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~L--~gI~ 1710 (2602)
+...++.+++++.. ...+..+.+..++..++++.|.+ .++.+...+. |.. .+.+.. .....+...| +||.
T Consensus 270 ~~~aa~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~l~~--~g~~~~~~~s---~Ii-~v~~g~~~~a~~~~~~L~~~Gi~ 343 (383)
T d1bs0a_ 270 AQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQD--LPFTLADSCS---AIQ-PLIVGDNSRALQLAEKLRQQGCW 343 (383)
T ss_dssp HHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTT--SSCEECSCCS---SBC-CEEEESHHHHHHHHHHHHHTTEE
T ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh--cCCccCCCCC---CEE-EEEECCHHHHHHHHHHHHHCCce
Confidence 55566667777554 34677788888999999999977 4666553322 221 122222 1223455555 8999
Q ss_pred EccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1711 VSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1711 v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
+.+...+..+ .....+|++++.++|++|||+++++|+.
T Consensus 344 v~~~~~PtVp----------------~g~~~lRi~~~a~ht~edid~l~~~L~~ 381 (383)
T d1bs0a_ 344 VTAIRPPTVP----------------AGTARLRLTLTAAHEMQDIDRLLEVLHG 381 (383)
T ss_dssp CCEECTTSSC----------------TTCEEECCBCCTTCCHHHHHHHHHHHHH
T ss_pred EEEEcCCCCC----------------CCCceEEEEeCCCCCHHHHHHHHHHHHh
Confidence 8765433221 1125699999999999999999999985
|
| >d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 5-aminolevulinate synthase species: Rhodobacter capsulatus [TaxId: 1061]
Probab=99.75 E-value=1.7e-17 Score=207.49 Aligned_cols=319 Identities=16% Similarity=0.115 Sum_probs=225.2
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCC
Q psy15216 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK 87 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd 87 (2602)
...|.++++..+++...-.... ....-....+..+++++++|+++|.+ ..++.+++..|+..++.++.. ..++|
T Consensus 59 ~~~p~v~~a~~~al~~yG~gs~--~Sr~~~G~~~~h~~LE~~lA~~~g~e--~all~~sG~~An~~~i~~l~~--~~~~d 132 (396)
T d2bwna1 59 GQHPVVLAAMHEALEAVGAGSG--GTRNISGTTAYHRRLEAEIAGLHQKE--AALVFSSAYNANDATLSTLRV--LFPGL 132 (396)
T ss_dssp GGCHHHHHHHHHHHHHHCSCCC--SBTTTBCCBHHHHHHHHHHHHHTTCS--EEEEESCHHHHHHHHHHHHHH--HSTTC
T ss_pred CCCHHHHHHHHHHHHHhCCCcc--ccccccCCchHHHHHHHHHHHHhCCC--ceeeeecchHHHHHHHHHHhc--ccCCC
Confidence 4578899999999886322221 22222333457889999999999975 667777788888888887741 25889
Q ss_pred EEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhcc----CCceEEEEecccCcccccccHHHHHHHHH
Q psy15216 88 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKIC----SDTILVSVMLVNNEIGVIQPILEIGELCR 163 (2602)
Q Consensus 88 ~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~----~~tklv~i~~~~npTG~~~~l~~I~~la~ 163 (2602)
.|+.....|.|+...++.. +++++.++.+ |.+++++++. .+.++|++..+.+++|.+.|+++|.++++
T Consensus 133 ~i~~D~~~Hasi~~g~~ls---~a~~~~f~Hn-----d~~~l~~l~~~~~~~~~~~iv~egvySmdGd~apl~~l~~L~~ 204 (396)
T d2bwna1 133 IIYSDSLNHASMIEGIKRN---AGPKRIFRHN-----DVAHLRELIAADDPAAPKLIAFESVYSMDGDFGPIKEICDIAE 204 (396)
T ss_dssp EEEEETTCCHHHHHHHHHS---CCCEEEECTT-----CHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBCCHHHHHHHHH
T ss_pred ceeehhhhhhccchhhhcc---ccCceEeecc-----hHHHhhhHHhhhcccCceeEEEEeeccCcccccccHhHHHHhh
Confidence 9999999999987776654 8888888754 5666666553 34679999999999999999999999999
Q ss_pred hcCCEEEEecccccccccccCC--------CCCccEEEeccccccCCCCcEEEEEecCCCCcccceecCCCccccccccC
Q psy15216 164 SKGVIFHCDAAQAVGKIDINIQ--------NYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGT 235 (2602)
Q Consensus 164 ~~g~~livD~a~a~g~~~~dl~--------~~~~D~~~~S~~K~~Gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt 235 (2602)
+||+++++|+||++|...-... ...+|++++|++|.+|..| |++.++++.++.++..-. ....+.+
T Consensus 205 ~y~~~L~vDeAHs~Gv~G~~G~G~~~~~~~~~~~di~~gTlsKa~g~~G-g~v~~~~~~i~~l~~~~~-----~~ifSta 278 (396)
T d2bwna1 205 EFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGVFG-GYIAASARMVDAVRSYAP-----GFIFSTS 278 (396)
T ss_dssp HHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTCSCC-EEEEECHHHHHHHHHHCH-----HHHTSBC
T ss_pred hhcceeeeccceeeeeeccccccchhhcCCceeeeeeeecccccccccc-cccchhHHHHHHHHhhcc-----hhhhccc
Confidence 9999999999999987542211 1236899999999999886 899998877776653211 0112345
Q ss_pred cchhHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc-cChhHHHHH-h--
Q psy15216 236 LATHQIVGMGEAFRLAR-IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGESLLMA-I-- 310 (2602)
Q Consensus 236 ~~~~~~~al~~al~~~~-~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~-L-- 310 (2602)
++++.+.++.+++++.. ....+.+.+...+.++++..+.+ .|+.+...+ .| +..+.+.. .....+.+. |
T Consensus 279 lpp~~~aa~~~al~i~~~~~~~~~r~~l~~~~~~~~~~l~~--~g~~~~~~~---sp-Ivpv~ig~~~~~~~~a~~lL~e 352 (396)
T d2bwna1 279 LPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKA--LGMPIIDHG---SH-IVPVVIGDPVHTKAVSDMLLSD 352 (396)
T ss_dssp CCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH--HTCCBCCCS---SS-CEEEECCCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHh--cCCCcCCCC---CC-EEEEEeCCHHHHHHHHHHHHHh
Confidence 56666667777787554 33456677777888889988876 355444322 23 22233321 222334444 3
Q ss_pred CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 311 KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 311 ~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
+||.+.+-.....+ .....+||+++..+|.+|||+++++|++
T Consensus 353 ~Gi~v~~i~~PtVp----------------~g~~rlRi~lsa~ht~edId~l~~~L~~ 394 (396)
T d2bwna1 353 YGVYVQPINFPTVP----------------RGTERLRFTPSPVHDLKQIDGLVHAMDL 394 (396)
T ss_dssp HCEECCEECTTTSC----------------TTCCEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCcCC----------------CCCeeEEEEeCccCCHHHHHHHHHHHHH
Confidence 58988765443322 1125699999999999999999999996
|
| >d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Pseudomonas putida [TaxId: 303]
Probab=99.75 E-value=1e-17 Score=206.82 Aligned_cols=310 Identities=15% Similarity=0.121 Sum_probs=211.2
Q ss_pred CcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHHHH-HhCC
Q psy15216 32 NHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDG 110 (2602)
Q Consensus 32 ~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~-~~~G 110 (2602)
.+.|++...+..+.+++.+|++.|.. ..++.+|+..|+..++.++. ++||+|++++..|+.....+... .+.|
T Consensus 50 ~~~Y~R~~nPT~~~LE~~la~LEg~~--~a~~~~SGmaAi~~~l~~l~----~~Gd~vl~~~~~Yg~t~~l~~~~~~~~G 123 (392)
T d1gc0a_ 50 GHFYSRISNPTLNLLEARMASLEGGE--AGLALASGMGAITSTLWTLL----RPGDEVLLGNTLYGCTFAFLHHGIGEFG 123 (392)
T ss_dssp -------CCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHC----CTTCEEEEESSCCSHHHHHHHHTGGGGT
T ss_pred CceecCCCChHHHHHHHHHHHHhCCc--ceeehhhHHHHHHHHHHhhc----cCCCeeecccccchhhhhhhhhhhccCC
Confidence 34566666677899999999999965 66788999999999999988 89999999999999998877655 7789
Q ss_pred cEEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHhcCCEEEEecccccccccccCCCCCcc
Q psy15216 111 FRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVD 190 (2602)
Q Consensus 111 ~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~~g~~livD~a~a~g~~~~dl~~~~~D 190 (2602)
+++.+++.. |++.++++++++|++|++..|.||+..+.|+++|+++||++|+++++|.+.+.|... ..-++|+|
T Consensus 124 i~~~~~d~~-----d~~~~~~ai~~~t~lv~~Esp~NP~l~v~Di~~i~~ia~~~g~~~vvDnT~atP~~~-~Pl~~GaD 197 (392)
T d1gc0a_ 124 VKLRHVDMA-----DLQALEAAMTPATRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYLQ-RPLELGAD 197 (392)
T ss_dssp CEEEEECTT-----CHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHGGGTCEEEEECTTTHHHHC-CGGGGTCS
T ss_pred cccccCCcc-----CHHHHHHhCCCCCeEEEecccccceeeecchHHHHHHHHhcCCEEEEecCccCcccc-ChHHhCCC
Confidence 999999754 799999999999999999999999999999999999999999999999998876542 22246899
Q ss_pred EEEeccccccCCCC---cEEEEEecCCCCcccceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy15216 191 LMSFSAHKIYGPKG---IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQK 267 (2602)
Q Consensus 191 ~~~~S~~K~~Gp~G---~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~ 267 (2602)
+++.|.+|.++..| .|.++++++.+.+++... .+....++++....+.+..+++- +..+.++..+++.
T Consensus 198 ivihS~TKyi~Ghsd~~~G~v~~~~~~~~~~r~~~-----~~~~~G~~~~p~da~ll~rgl~T----L~lRm~~~~~nA~ 268 (392)
T d1gc0a_ 198 LVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQG-----LKDMTGAVLSPHDAALLMRGIKT----LNLRMDRHCANAQ 268 (392)
T ss_dssp EEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTH-----HHHHTCCCCCHHHHHHHHHHHTT----HHHHHHHHHHHHH
T ss_pred EEEEecceeecCCcccccccccchhHHHHHHHHHH-----HHHccCCcCChhhHHHHHhcccc----HHHHHHHHHHHHH
Confidence 99999999776555 688888776554432111 01223445666666655556553 3444555566666
Q ss_pred HHHHHHhhccCceE-EeCC--C---CC--------CCCceEEEEEccc--ChhHHHHHhC--CeEEcccccCCC------
Q psy15216 268 RLYNGLMESIEEIY-INGD--M---NN--------RIPHNLNISFNFI--EGESLLMAIK--DIAVSSGSACTS------ 323 (2602)
Q Consensus 268 ~l~~~L~~~~~g~~-l~~~--~---~~--------~~~~~~~~~~~~~--~~~~~~~~L~--gI~v~~g~~~~~------ 323 (2602)
.+.+.|++ .|.++ ++-| + .. .....+.|.+.+. ....+++.|+ ++..+-|...+-
T Consensus 269 ~lA~~L~~-hp~V~~V~yPgl~s~p~~~~~~~~~~~~gg~~sf~l~~~~~~~~~f~~~L~l~~~a~SlGg~eSLi~~pa~ 347 (392)
T d1gc0a_ 269 VLAEFLAR-QPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGGIGAGRRFMNALQLFSRAVSLGDAESLAQHPAS 347 (392)
T ss_dssp HHHHHHHT-CTTEEEEEEC----------------CCTTEEEEEETTHHHHHHHHHHHCSSSEECSCCSCSSCEEECGGG
T ss_pred HHHHHHHh-CCCccEEeeccccCCcccccccccccCCCcEEEEEEeCCHHHHHHHHHhCCcceEeeccCCcChhhcCccc
Confidence 66666665 45443 2111 1 10 1122344444321 2345677663 344444432210
Q ss_pred -C-CCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHH
Q psy15216 324 -A-SLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK 367 (2602)
Q Consensus 324 -~-~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~ 367 (2602)
. ...+...+..+|+++ +.||||+|..+.++-++.+-++|+
T Consensus 348 ~th~~~~~e~r~~~Gi~~----~liRlSVGlEd~eDLi~Dl~~AL~ 389 (392)
T d1gc0a_ 348 MTHSSYTPEERAHYGISE----GLVRLSVGLEDIDDLLADVQQALK 389 (392)
T ss_dssp TTTSSSCHHHHHHTTCCT----TEEEEECCSSCHHHHHHHHHHHHH
T ss_pred cccccCCHHHHHHcCCCc----CeEEEEeeeCCHHHHHHHHHHHHH
Confidence 0 112334556678774 899999998666555556656555
|
| >d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Prokaryotic actin homolog MreB species: Thermotoga maritima [TaxId: 2336]
Probab=99.75 E-value=1.9e-18 Score=184.90 Aligned_cols=133 Identities=28% Similarity=0.362 Sum_probs=101.9
Q ss_pred EEEEEcCcccEEEEEEECCeEEEEeCCCCCccccEEEEEec-CCc-EEecHHHHhhhccCCCCchhhhhhhcCCCCCCCC
Q psy15216 2035 SIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLP-DGK-IYVGKKAKITQNIDPKNTISSIKRFIARDLKNIN 2112 (2602)
Q Consensus 2035 vvGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~-~~~-~~vG~~A~~~~~~~p~~~~~~~K~~lg~~~~~~~ 2112 (2602)
.||||||||||+||+...+ .++. .|+.+++.. .+. ..+|..++.....+|.+.. ..|++
T Consensus 2 ~iGIDlGTtns~va~~~~~--~v~~-------~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~-~~k~~--------- 62 (137)
T d1jcea1 2 DIGIDLGTANTLVFLRGKG--IVVN-------EPSVIAIDSTTGEILKVGLEAKNMIGKTPATIK-AIRPM--------- 62 (137)
T ss_dssp EEEEEECSSEEEEEETTTE--EEEE-------EESCEEEETTTCCEEEESHHHHTTTTCCCTTEE-EECCE---------
T ss_pred eEEEEcChhhEEEEEeCCC--EEee-------cCCcceEecCCCeEEEEehHHhhhhhhccccce-eEEec---------
Confidence 5999999999999875443 3332 245555543 333 4567777655544443322 22211
Q ss_pred CCCCCeeeecCCCceEEEecCceeCHHHHHHHHHHHHHHHHHHhhccccceEEEeeCCCCCHHHHHHHHHHHHHcCCcee
Q psy15216 2113 TNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIFGAVITVPAYFNDIQRQFTKNAAKLAGLNVL 2192 (2602)
Q Consensus 2113 ~~~~~~~~~~~~g~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~ViTVPa~f~~~qr~~l~~Aa~~AGl~~~ 2192 (2602)
.+..+++.+..+.++++++..++...+.++.++|||||++|++.||+++++||+.||++++
T Consensus 63 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VItVPa~f~~~qR~at~~Aa~~AGl~vv 123 (137)
T d1jcea1 63 -------------------RDGVIADYTVALVMLRYFINKAKGGMNLFKPRVVIGVPIGITDVERRAILDAGLEAGASKV 123 (137)
T ss_dssp -------------------ETTEESSHHHHHHHHHHHHHHHHTSCCSCCCEEEEEECTTCCHHHHHHHHHHHHHTTCSEE
T ss_pred -------------------cCCccCcHHHHHHHHHHHHHHHHhhcCccccceEEEeecccCHHHHHHHHHHHHHcCCCEE
Confidence 2345678899999999999999999999999999999999999999999999999999999
Q ss_pred EeechhHHHHHHh
Q psy15216 2193 RLLNEPTSAAIAY 2205 (2602)
Q Consensus 2193 ~li~EP~AAAl~y 2205 (2602)
+||+||+|||+.+
T Consensus 124 ~li~EPtAAAiGa 136 (137)
T d1jcea1 124 FLIEEPMAAAIGS 136 (137)
T ss_dssp EEEEHHHHHHHHT
T ss_pred EEeCCHHHHHhCC
Confidence 9999999999864
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.75 E-value=1.4e-17 Score=216.66 Aligned_cols=301 Identities=16% Similarity=0.120 Sum_probs=205.8
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEecc--
Q psy15216 1437 KAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP-- 1514 (2602)
Q Consensus 1437 ~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~-- 1514 (2602)
....++..++++++|.+....+...|+++++.+++++... ..++++|+++...|+++...+..+ |+.++.++.
T Consensus 113 ~~~~~~~~~~~~~~g~~~~~~~~~~~t~~~~~~~l~a~r~--~~~~~~vi~s~~~H~s~~k~~~~~---g~~~~~v~~~~ 187 (434)
T d2z67a1 113 ALTNKILESFFKQLGLNVHAIATPISTGMSISLCLSAARK--KYGSNVVIYPYASHKSPIKAVSFV---GMNMRLVETVL 187 (434)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEEESSCHHHHHHHHHHHHHH--HHCCCEEEEECCCCHHHHHHHHHT---TCEEEEECCEE
T ss_pred HHHHHHHHHHHHhcCCCcceeecCcHHHHHHHHHHHHHHH--hhcCceEEEeccCCHHHHHHHHHh---CCcceEEEeec
Confidence 3445566778888887654445555666666667666541 247899999999999998887766 888888864
Q ss_pred -CCCCCcChhHHHhhccC-----CceEEEEeccccccccccChHHHHHHhhhcCCEEEEecccccCcc-----cccCCCC
Q psy15216 1515 -KNNGLITLSQLEEKICS-----DTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKI-----DINIQNY 1583 (2602)
Q Consensus 1515 -~~~~~id~d~l~~~i~~-----~t~lv~l~~~~n~tG~~~~l~~I~~ia~~~gi~vivD~a~~~g~~-----~~~l~~~ 1583 (2602)
+.++.+|+++|+++|.+ ++.+|+++++++++|.+.|+++|+++|++||+|+++|+||+.+.. +......
T Consensus 188 ~~~~~~~d~~~l~~~i~~~~~~~~~~~v~~~~~~~~~g~~~~l~~i~~~~~~~~~~l~vD~a~g~~~~~~~~~~~~~~~~ 267 (434)
T d2z67a1 188 DGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKY 267 (434)
T ss_dssp ETTEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHTS
T ss_pred CCCccCCCHHHHHHHHHhhhhcCCceEEEeccCcCCCccccCHHHHHHHHHHhCCeEEEeccchhhhhhccccccccccC
Confidence 34567999999999963 678999999999999999999999999999999999999976542 2223456
Q ss_pred CccEEEEcccc-ccCCCceEEEEEecC-CCCccccccccCCccccCCCCCcchhHHHHHHHHHH-HHHHHHHHHHHHHHH
Q psy15216 1584 KVDLMSFSAHK-IYGPKGIGALYIRRN-PRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFR-LARIEMKEELKRILF 1660 (2602)
Q Consensus 1584 ~~D~~v~S~~K-~~gp~G~G~l~~~~~-~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~-~~~~~~~~~~~~~~~ 1660 (2602)
++|++++|+|| +++|.|.|+++.+++ .++++.+.. .++........+.+++. +...++....++..+
T Consensus 268 ~~D~~~~s~hK~l~~~~g~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~a~l~~~~~~g~~~~~~~~~~ 337 (434)
T d2z67a1 268 RVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEISLSY----------PGRASATPVVNTLVSLLSMGSKNYLELVKNQKN 337 (434)
T ss_dssp CCSEEEEEHHHHHCCCSSCEEEEESCHHHHHHHHTTS----------CSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcceEEEcCccccccCCCccccccCcHHHHHHHHhhc----------ccccccchHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 89999999999 678999899988753 222332221 23333333444444554 445667888888889
Q ss_pred HHHHHHHHHhhc--CCcEEEeCCCCCCCCceEEEEEecCCcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCcc
Q psy15216 1661 LQKRLYNGLMES--IEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDE 1736 (2602)
Q Consensus 1661 l~~~l~~~L~~~--~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~ 1736 (2602)
+++++++.|.+. ..+..+...+ .+....+.+ ..+..++...| .||..... ..+.. .......+ .
T Consensus 338 ~a~~l~~~L~~l~~~~g~~ll~~~---~~~~~~~~~-~~~~~~l~~~L~~~gI~g~~v---~~~l~--~~g~~~~~---~ 405 (434)
T d2z67a1 338 SKKLLDELLNDLSKKTGGKFLDVE---SPIASCISV-NSDPVEIAAKLYNLRVTGPRG---IKKTD--HFGNCYLG---T 405 (434)
T ss_dssp HHHHHHHHHHHHHHHSSCCBCCCC---CSSEEEEEC-SSCHHHHHHHHHHTTEESCEE---ECTTC--HHHHTCSS---C
T ss_pred HHHHHHHHHHHhhhhcCceecCCC---CCceeeeec-CCCHHHHHHHHHHcCCeeeeh---hhhcc--ccCeeeec---c
Confidence 999998888761 1244443322 223333333 34556666666 67653222 11111 11111111 2
Q ss_pred ccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1737 LAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1737 ~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
..++++|++++.++|.||||+++++|++
T Consensus 406 ~~~~~l~~~~s~~~T~edID~~i~~L~k 433 (434)
T d2z67a1 406 YTHDYIVMNAAIGVRTEDIVNSVSKLEK 433 (434)
T ss_dssp CSCCEEEEECCTTCCHHHHHHHHHHHHT
T ss_pred cCCCeEEEecCCCCCHHHHHHHHHHHhc
Confidence 2348899999999999999999999986
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.74 E-value=2.3e-17 Score=214.43 Aligned_cols=300 Identities=16% Similarity=0.115 Sum_probs=207.2
Q ss_pred HHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEecc---
Q psy15216 42 AIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP--- 118 (2602)
Q Consensus 42 ~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~--- 118 (2602)
+..++..++++++|.+....+...|+++++.+++.+... ..++++|+++...|+++..++..+ |+.++.+++
T Consensus 114 ~~~~~~~~~~~~~g~~~~~~~~~~~t~~~~~~~l~a~r~--~~~~~~vi~s~~~H~s~~k~~~~~---g~~~~~v~~~~~ 188 (434)
T d2z67a1 114 LTNKILESFFKQLGLNVHAIATPISTGMSISLCLSAARK--KYGSNVVIYPYASHKSPIKAVSFV---GMNMRLVETVLD 188 (434)
T ss_dssp HHHHHHHHHHHHTTCCCEEEEESSCHHHHHHHHHHHHHH--HHCCCEEEEECCCCHHHHHHHHHT---TCEEEEECCEEE
T ss_pred HHHHHHHHHHHhcCCCcceeecCcHHHHHHHHHHHHHHH--hhcCceEEEeccCCHHHHHHHHHh---CCcceEEEeecC
Confidence 445566778888898765556666766677777776541 247899999999999998888766 888888864
Q ss_pred CCCCccChHHHHhhcc-----CCceEEEEecccCcccccccHHHHHHHHHhcCCEEEEecccccccc-----cccCCCCC
Q psy15216 119 KNNGLITLSQLEEKIC-----SDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKI-----DINIQNYK 188 (2602)
Q Consensus 119 ~~~~~ld~e~l~~~i~-----~~tklv~i~~~~npTG~~~~l~~I~~la~~~g~~livD~a~a~g~~-----~~dl~~~~ 188 (2602)
+..+.+|+++|+++|. .++.+|+++++++++|.+.|+++|+++||+||+++++|+||+.+.. +......+
T Consensus 189 ~~~~~~d~~~l~~~i~~~~~~~~~~~v~~~~~~~~~g~~~~l~~i~~~~~~~~~~l~vD~a~g~~~~~~~~~~~~~~~~~ 268 (434)
T d2z67a1 189 GDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYR 268 (434)
T ss_dssp TTEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHTSC
T ss_pred CCccCCCHHHHHHHHHhhhhcCCceEEEeccCcCCCccccCHHHHHHHHHHhCCeEEEeccchhhhhhccccccccccCC
Confidence 3457899999999996 3678999999999999999999999999999999999999976432 22233567
Q ss_pred ccEEEecccc-ccCCCCcEEEEEecC-CCCcccceecCCCccccccccCcchhHHHHHHHHHH-HHHHhHHHHHHHHHHH
Q psy15216 189 VDLMSFSAHK-IYGPKGIGALYIRRN-PRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFR-LARIEMKEELKRILFL 265 (2602)
Q Consensus 189 ~D~~~~S~~K-~~Gp~G~G~l~~~~~-~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~-~~~~~~~~~~~~~~~l 265 (2602)
+|++++|+|| +++|.|.|+++.+++ .++++.+.. .++.+......+.+++. +...++.+..++..++
T Consensus 269 ~D~~~~s~hK~l~~~~g~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~a~l~~~~~~g~~~~~~~~~~~ 338 (434)
T d2z67a1 269 VDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEISLSY----------PGRASATPVVNTLVSLLSMGSKNYLELVKNQKNS 338 (434)
T ss_dssp CSEEEEEHHHHHCCCSSCEEEEESCHHHHHHHHTTS----------CSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEcCccccccCCCccccccCcHHHHHHHHhhc----------ccccccchHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 9999999999 667889999888753 233333222 22223333333334444 3446678888888899
Q ss_pred HHHHHHHHhhc--cCceEEeCCCCCCCCceEEEEEcccChhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccC
Q psy15216 266 QKRLYNGLMES--IEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDEL 341 (2602)
Q Consensus 266 ~~~l~~~L~~~--~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~ 341 (2602)
++++.++|++. ..+..++..+. +....+.+ ..+..++...| .||.... +..+.. ...+...+ ..
T Consensus 339 a~~l~~~L~~l~~~~g~~ll~~~~---~~~~~~~~-~~~~~~l~~~L~~~gI~g~~---v~~~l~--~~g~~~~~---~~ 406 (434)
T d2z67a1 339 KKLLDELLNDLSKKTGGKFLDVES---PIASCISV-NSDPVEIAAKLYNLRVTGPR---GIKKTD--HFGNCYLG---TY 406 (434)
T ss_dssp HHHHHHHHHHHHHHSSCCBCCCCC---SSEEEEEC-SSCHHHHHHHHHHTTEESCE---EECTTC--HHHHTCSS---CC
T ss_pred HHHHHHHHHHhhhhcCceecCCCC---Cceeeeec-CCCHHHHHHHHHHcCCeeee---hhhhcc--ccCeeeec---cc
Confidence 99998888661 13555553322 23333333 34566666666 5664322 211111 11111122 22
Q ss_pred CCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 342 AHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 342 ~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
.++++|++++.++|.||||+++++|++
T Consensus 407 ~~~~l~~~~s~~~T~edID~~i~~L~k 433 (434)
T d2z67a1 407 THDYIVMNAAIGVRTEDIVNSVSKLEK 433 (434)
T ss_dssp SCCEEEEECCTTCCHHHHHHHHHHHHT
T ss_pred CCCeEEEecCCCCCHHHHHHHHHHHhc
Confidence 358899999999999999999999986
|
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Probab=99.74 E-value=6.7e-17 Score=205.28 Aligned_cols=324 Identities=14% Similarity=0.137 Sum_probs=227.8
Q ss_pred CCCCCC---C-CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHH
Q psy15216 1 MDYSAT---T-PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIK 76 (2602)
Q Consensus 1 Ld~a~~---~-~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~ 76 (2602)
||++++ + ...|.+++++.++++.....+.. ........+..+++++.+|+++|.+ .+++.++++.|+..++.
T Consensus 48 l~f~s~dYLGl~~hp~v~~a~~~a~~~~g~~~~~--sr~~~g~~~~~~~lE~~lA~~~g~e--~al~~~SG~~An~~~i~ 123 (401)
T d1fc4a_ 48 INFCANNYLGLANHPDLIAAAKAGMDSHGFGMAS--VRFICGTQDSHKELEQKLAAFLGME--DAILYSSCFDANGGLFE 123 (401)
T ss_dssp EECCCSCTTSCTTCHHHHHHHHHHHHHHCSCCCS--CHHHHCCBHHHHHHHHHHHHHHTCS--EEEEESCHHHHHHTTHH
T ss_pred EEEEccccccccCCHHHHHHHHHHHHHhCCCccc--ceeeccCcHHHHHHHHHHHHhhcCC--ceEEecchhhhhHHHHH
Confidence 355554 2 34789999999998764333322 2222223467789999999999964 78999999999999999
Q ss_pred hcccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhcc------CCceEEEEecccCccc
Q psy15216 77 GAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKIC------SDTILVSVMLVNNEIG 150 (2602)
Q Consensus 77 ~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~------~~tklv~i~~~~npTG 150 (2602)
++. +++|.|++....|+++...+... ++++..++. .|.+++++++. +.+.+|++.++.++.|
T Consensus 124 ~l~----~~~d~i~~d~~~h~s~~~G~~~~---~a~~~~~~~-----~d~~~le~~~~~~~~~~~~~~liv~egv~s~~G 191 (401)
T d1fc4a_ 124 TLL----GAEDAIISDALNHASIIDGVRLC---KAKRYRYAN-----NDMQELEARLKEAREAGARHVLIATDGVFSMDG 191 (401)
T ss_dssp HHC----CTTCEEEEETTCCHHHHHHHHTS---CSEEEEECT-----TCHHHHHHHHHHHHHTTCSSEEEEEESEETTTT
T ss_pred Hhc----CCCcEEEeCCcchHHHHcccccc---CceEEEEcC-----CChHHHHHHHHHhhhcccCceEEEEcCCCCCCC
Confidence 988 89999999999999987766544 778777764 36666666552 3457899999999999
Q ss_pred ccccHHHHHHHHHhcCCEEEEecccccccccccCC--------CCCccEEEecccccc-CCCCcEEEEEecCCCCcccce
Q psy15216 151 VIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQ--------NYKVDLMSFSAHKIY-GPKGIGALYIRRNPRTRIEAQ 221 (2602)
Q Consensus 151 ~~~~l~~I~~la~~~g~~livD~a~a~g~~~~dl~--------~~~~D~~~~S~~K~~-Gp~G~G~l~~~~~~~~~l~~~ 221 (2602)
.+.|+++|.++|++||+++++|++|++|....... ...+|++++|++|.+ |+. .|++..++++++.++..
T Consensus 192 ~~~~L~~l~~L~~~~~a~LivDeah~~g~~g~~G~G~~~~~~~~~~~dii~~tl~Ka~gg~~-Gg~v~g~~~~~~~l~~~ 270 (401)
T d1fc4a_ 192 VIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKALGGAS-GGYTAARKEVVEWLRQR 270 (401)
T ss_dssp EECCHHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSSS-CEEEEECHHHHHHHHHH
T ss_pred chhhhhHHHHHHhhcCcEEEehhhhccccccCCCCccchhccCCCCCeEEEeecccccccCC-cccccCCHHHHHHHHcC
Confidence 99999999999999999999999999876432111 124789999999976 555 48888888777655422
Q ss_pred ecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc-
Q psy15216 222 IHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF- 300 (2602)
Q Consensus 222 ~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~- 300 (2602)
-.+ ......++.....++..+++... ..++.+++..++..++++.+.+ .++.+.... .| +..+.+..
T Consensus 271 ~~~-----~~~s~~l~p~~~~aa~~~l~~~~-~~~~~~~~l~~~~~~~~~~l~~--~g~~~~~~~---~p-Iv~v~~~~~ 338 (401)
T d1fc4a_ 271 SRP-----YLFSNSLAPAIVAASIKVLEMVE-AGSELRDRLWANARQFREQMSA--AGFTLAGAD---HA-IIPVMLGDA 338 (401)
T ss_dssp CHH-----HHHSCCCCHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHHH--TTCCBCCSS---SS-EEEEEEECH
T ss_pred Chh-----hhhcCCCCHHHHHHHHhhhcccc-cCHHHHHHHHHHHHHHHhhhcc--cCCccCCCC---CC-EEEEEECCH
Confidence 110 11233445555555656666443 3477888999999999999977 455444322 22 22233322
Q ss_pred cChhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 301 IEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 301 ~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
.....+.+.| +||.+.+-.....+ .....||++++..+|++|||+++++|++.
T Consensus 339 ~~a~~~~~~L~~~Gi~v~~i~~PtVp----------------~g~~~lRi~~~a~hT~edId~~v~al~ev 393 (401)
T d1fc4a_ 339 VVAQKFARELQKEGIYVTGFFYPVVP----------------KGQARIRTQMSAAHTPEQITRAVEAFTRI 393 (401)
T ss_dssp HHHHHHHHHHHHTTEECCEECTTSSC----------------TTCEEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCceEEeECCCCCC----------------CCCceEEEEECCCCCHHHHHHHHHHHHHH
Confidence 2233555666 79998754322221 11245999999999999999999999975
|
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Probab=99.73 E-value=1e-17 Score=212.63 Aligned_cols=281 Identities=11% Similarity=0.051 Sum_probs=187.5
Q ss_pred HHHHHHHHHHh----CC--CCCcEEEeCCHHHHHHHHHHhcccc----cccCCCEEEEcCCCCcccHHHHHHHHhCCcEE
Q psy15216 44 EKARNEVAQLI----YA--DPREIIWTSGATESNNLAIKGAAHF----YKKRGKHIITVQTEHKSVLDSIRKLENDGFRV 113 (2602)
Q Consensus 44 ~~~r~~lA~~~----g~--~~~~Iv~t~g~T~al~~~~~~l~~~----~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v 113 (2602)
.++++.|++++ |+ +..+|++++|+|++|++++++|... ...|||+|+++.|.|+.|....+.+ +.+.
T Consensus 103 ~~L~~~i~~lh~~~gna~t~~~~IvvG~Gsteli~~~~~AL~~~~~~~~~~pg~~Vv~~~P~y~~Y~~~~~~~---~~~~ 179 (425)
T d2hoxa1 103 FELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYF---DKKG 179 (425)
T ss_dssp HHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHS---CBTT
T ss_pred HHHHHHHHHHHhhhCCCCCCCCEEEECCCHHHHHHHHHHHhccccccccCCCCCEEEEecCccccHHHHHHHc---CCCC
Confidence 45666666655 33 4346999999999999999998421 1268999999999999998777665 4332
Q ss_pred EEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHhcCCEEEEecccccccc-cccCCCCCccEE
Q psy15216 114 TYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKI-DINIQNYKVDLM 192 (2602)
Q Consensus 114 ~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~~g~~livD~a~a~g~~-~~dl~~~~~D~~ 192 (2602)
.. +.+|.+.++++++++++++++++||||||.+.. +-.+++.+|.|+++..+.. ++ ......+++
T Consensus 180 ~~------~~~D~~~~~~~~~~~~~ii~l~sPnNPtG~l~~-------~v~~~~~~I~DEaY~~~~f~~~-~~~~~~~Iv 245 (425)
T d2hoxa1 180 YV------WAGNAANYVNVSNPEQYIEMVTSPNNPEGLLRH-------AVIKGCKSIYDMVYYWPHYTPI-KYKADEDIL 245 (425)
T ss_dssp EE------EEEEGGGGTTCSCGGGEEEEEESSCTTTCCCCC-------CSSTTCEEEEECTTCSTTTSCC-CSCBCCSEE
T ss_pred Cc------cCCCHHHHHhhCCCCceEEEEECCCCCCcchhh-------hhhhCCEEEEeccccCccccch-hhhcCCeEE
Confidence 22 346889999999999999999999999998742 2236899999999865432 22 223346799
Q ss_pred EeccccccCCCC--cEEEEEecC-CCCcccceecCCCccccccccCcchhHHHHHHHHHHHHH-----------HhHHHH
Q psy15216 193 SFSAHKIYGPKG--IGALYIRRN-PRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLAR-----------IEMKEE 258 (2602)
Q Consensus 193 ~~S~~K~~Gp~G--~G~l~~~~~-~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~-----------~~~~~~ 258 (2602)
+.|++|.||++| +||++++++ +.+++.... .+...+++.....++.++|+... ...+..
T Consensus 246 l~S~SK~fglaGlRiGw~i~~~~~i~~~~~~~~-------~~~~~~vs~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~~~~ 318 (425)
T d2hoxa1 246 LFTMSKFTGHSGSRFGWALIKDESVYNNLLNYM-------TKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFG 318 (425)
T ss_dssp EEEHHHHTSCGGGCCEEEEECCHHHHHHHHHHH-------HHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHH
T ss_pred EEeCHHhccCcchheeeEEeCCHHHHHHHHHhh-------ccCcccCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHH
Confidence 999999999999 899888754 333343222 11123455555555556665221 124556
Q ss_pred HHHHHHHHHHHHHHHhhccCceEEeCCCCC-----------CCCceEEEEEcccChhHHHHHh--CCeEEcccccCCCCC
Q psy15216 259 LKRILFLQKRLYNGLMESIEEIYINGDMNN-----------RIPHNLNISFNFIEGESLLMAI--KDIAVSSGSACTSAS 325 (2602)
Q Consensus 259 ~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~L--~gI~v~~g~~~~~~~ 325 (2602)
++++++.++++.+.|.+ .+.+.+...+.. ..+....+.+...+.....+.| +||.+++|..|...
T Consensus 319 ~~~l~~r~~~l~~~L~~-~~~~~l~~~p~~~~~~f~~~~~~~~~~f~wl~~~~~~~~~~~~lL~e~gI~v~pGs~FG~~- 396 (425)
T d2hoxa1 319 FKKLRERWVNITALLDQ-SDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKDCYQTFQNGRINTQNGVGFEAS- 396 (425)
T ss_dssp HHHHHHHHHHHHHHHTT-SSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSGGGCSHHHHHHHTTEECEEGGGGTSC-
T ss_pred HHHHHHHHHHHHHHHHh-cCCceeeccCCccceeeeeeccCCCcceeeeeCCCChHHHHHHHHHhCCEEEEechhcCCC-
Confidence 67777788888888876 444443322111 0112222333222222222223 89999999887432
Q ss_pred CChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 326 LEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 326 ~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
++++|||+. .++++++.++++|++.
T Consensus 397 -----------------~~yvRisl~--~~~e~ld~~l~rL~~~ 421 (425)
T d2hoxa1 397 -----------------SRYVRLSLI--KTQDDFDQLMYYLKDM 421 (425)
T ss_dssp -----------------TTEEEEECS--SCHHHHHHHHHHHHHH
T ss_pred -----------------CCEEEEEec--CCHHHHHHHHHHHHHH
Confidence 389999986 4888899999999963
|
| >d1su0b_ d.224.1.2 (B:) IscU homolog SPy0289 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: SufE/NifU superfamily: SufE/NifU family: NifU/IscU domain domain: IscU homolog SPy0289 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.73 E-value=1e-18 Score=183.74 Aligned_cols=86 Identities=33% Similarity=0.560 Sum_probs=79.6
Q ss_pred hhhhhhhhhhhhcCCCCcCcccCCCCcceeeeecCCCCccEEEEEEEEcCCCcEEeeeeeccccchhHhhHHHHHHHHcC
Q psy15216 1768 FMSYSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKTYGCGSAIASSSLVTEWVKG 1847 (2602)
Q Consensus 1768 ~~~y~~~i~dh~~~p~~~g~~~~~~~~~~~~~~~~~~cgd~~~~~~~~~~~~~i~~~~~~~~gc~~~~a~~s~~~~~~~g 1847 (2602)
+.+|+++|+|||+||||.|.+++++ .++.+||.|||.|+||++|+ +++|+|++|++.||++++|||||++++++|
T Consensus 2 ~~lY~~~Ildh~~nP~n~g~l~~~~----~~~~~Np~CGD~i~i~l~i~-~~~I~di~f~~~GCai~~ASasil~e~i~g 76 (136)
T d1su0b_ 2 NHLYMAVVADHSKRPHHHGQLDGVE----AVQLNNPTCGDVISLTVKFD-EDKIEDIAFAGNGCTISTASSSMMTDAVIG 76 (136)
T ss_dssp CHHHHHHHHHHHHSCSSBSCCTTCC----CEEEECSSSCCEEEEEEEES-SSSEEEEEEEEECCHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHhCCCCCCCCCCCC----eeeecCCCCCCEEEEEEEEc-CCeeeEEEEEeccCHHHHHHHHHHHHHHhC
Confidence 5689999999999999999998765 35678999999999999996 679999999999999999999999999999
Q ss_pred CChhhhhcccc
Q psy15216 1848 KTLDEAMSIKN 1858 (2602)
Q Consensus 1848 ~~~~~~~~i~~ 1858 (2602)
|+++++..+.+
T Consensus 77 k~~~e~~~l~~ 87 (136)
T d1su0b_ 77 KSKEEALALAD 87 (136)
T ss_dssp CCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99999988864
|
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Probab=99.73 E-value=8.6e-18 Score=213.26 Aligned_cols=280 Identities=11% Similarity=0.056 Sum_probs=187.0
Q ss_pred HHHHHHHHHHh----CC--CCCcEEEeCCHHHHHHHHHHhhhhh----hccCCCEEEEcCCCCcchHHHHHHHHhCCcEE
Q psy15216 1440 EKARNEVAQLI----YA--DPREIIWTSGATESNNLAIKGAAHF----YKKRGKHIITVQTEHKSVLDSIRKLENDGFRV 1509 (2602)
Q Consensus 1440 ~~lr~~ia~~~----g~--~~~~iv~t~gaT~al~~al~~l~~~----~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v 1509 (2602)
.++++.|++++ |+ +..+|++++|+|+++++++.++... ..+|||+|+++.|.|+.|....+.+ +...
T Consensus 103 ~~L~~~i~~lh~~~gna~t~~~~IvvG~Gsteli~~~~~AL~~~~~~~~~~pg~~Vv~~~P~y~~Y~~~~~~~---~~~~ 179 (425)
T d2hoxa1 103 FELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYF---DKKG 179 (425)
T ss_dssp HHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHS---CBTT
T ss_pred HHHHHHHHHHHhhhCCCCCCCCEEEECCCHHHHHHHHHHHhccccccccCCCCCEEEEecCccccHHHHHHHc---CCCC
Confidence 56777777765 32 4456999999999999999998421 1379999999999999998777665 4332
Q ss_pred EEeccCCCCCcChhHHHhhccCCceEEEEeccccccccccChHHHHHHhhhcCCEEEEecccccCcc-cccCCCCCccEE
Q psy15216 1510 TYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKI-DINIQNYKVDLM 1588 (2602)
Q Consensus 1510 ~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~~ia~~~gi~vivD~a~~~g~~-~~~l~~~~~D~~ 1588 (2602)
.. +.+|.+.++++++++++++++++||||||.+.. +-.+++.+|.|+++..... ++ ......+++
T Consensus 180 ~~------~~~D~~~~~~~~~~~~~ii~l~sPnNPtG~l~~-------~v~~~~~~I~DEaY~~~~f~~~-~~~~~~~Iv 245 (425)
T d2hoxa1 180 YV------WAGNAANYVNVSNPEQYIEMVTSPNNPEGLLRH-------AVIKGCKSIYDMVYYWPHYTPI-KYKADEDIL 245 (425)
T ss_dssp EE------EEEEGGGGTTCSCGGGEEEEEESSCTTTCCCCC-------CSSTTCEEEEECTTCSTTTSCC-CSCBCCSEE
T ss_pred Cc------cCCCHHHHHhhCCCCceEEEEECCCCCCcchhh-------hhhhCCEEEEeccccCccccch-hhhcCCeEE
Confidence 22 346888999999999999999999999998742 2346899999999864432 22 222346799
Q ss_pred EEccccccCCCc--eEEEEEecCCC-CccccccccCCccccCCCCCcchhHHHHHHHHHHHHH-----------HHHHHH
Q psy15216 1589 SFSAHKIYGPKG--IGALYIRRNPR-TRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLAR-----------IEMKEE 1654 (2602)
Q Consensus 1589 v~S~~K~~gp~G--~G~l~~~~~~~-~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~-----------~~~~~~ 1654 (2602)
+.|++|.||++| +||++++++.+ +.+.... .+...+++...+.+..++|+... ..++..
T Consensus 246 l~S~SK~fglaGlRiGw~i~~~~~i~~~~~~~~-------~~~~~~vs~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~~~~ 318 (425)
T d2hoxa1 246 LFTMSKFTGHSGSRFGWALIKDESVYNNLLNYM-------TKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFG 318 (425)
T ss_dssp EEEHHHHTSCGGGCCEEEEECCHHHHHHHHHHH-------HHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHH
T ss_pred EEeCHHhccCcchheeeEEeCCHHHHHHHHHhh-------ccCcccCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHH
Confidence 999999999999 89998876532 3333221 11122344444455556665221 124556
Q ss_pred HHHHHHHHHHHHHHHhhcCCcEEEeCCCCCC-----------CCceEEEEEecCCcHHHHHhc--CCEEEccccccCCCC
Q psy15216 1655 LKRILFLQKRLYNGLMESIEEIYINGDMNNR-----------IPHNLNISFNFIEGESLLMAI--KDIAVSSGSACTSAS 1721 (2602)
Q Consensus 1655 ~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~L--~gI~v~~g~~~~~~~ 1721 (2602)
++++++.++++.+.|.+ ...+.+...+... .+....+.....+.......| +||.+++|..|+..
T Consensus 319 ~~~l~~r~~~l~~~L~~-~~~~~l~~~p~~~~~~f~~~~~~~~~~f~wl~~~~~~~~~~~~lL~e~gI~v~pGs~FG~~- 396 (425)
T d2hoxa1 319 FKKLRERWVNITALLDQ-SDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKDCYQTFQNGRINTQNGVGFEAS- 396 (425)
T ss_dssp HHHHHHHHHHHHHHHTT-SSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSGGGCSHHHHHHHTTEECEEGGGGTSC-
T ss_pred HHHHHHHHHHHHHHHHh-cCCceeeccCCccceeeeeeccCCCcceeeeeCCCChHHHHHHHHHhCCEEEEechhcCCC-
Confidence 67777788888888877 4555443222110 111111222211222222222 89999999988542
Q ss_pred CChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1722 LEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1722 ~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
.+++|||+. .++++++.++++|++
T Consensus 397 -----------------~~yvRisl~--~~~e~ld~~l~rL~~ 420 (425)
T d2hoxa1 397 -----------------SRYVRLSLI--KTQDDFDQLMYYLKD 420 (425)
T ss_dssp -----------------TTEEEEECS--SCHHHHHHHHHHHHH
T ss_pred -----------------CCEEEEEec--CCHHHHHHHHHHHHH
Confidence 279999986 588999999999997
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.73 E-value=6.9e-18 Score=220.50 Aligned_cols=315 Identities=14% Similarity=0.082 Sum_probs=201.2
Q ss_pred HHHHHHHHHHHHHHhCCCC-CcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEecc
Q psy15216 1436 EKAIEKARNEVAQLIYADP-REIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP 1514 (2602)
Q Consensus 1436 ~~~~~~lr~~ia~~~g~~~-~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~ 1514 (2602)
..+..++.+++++++|.+. ...++|+++|++...++....+....++++|+++...|+++..++..+ |+.++.|+.
T Consensus 93 ~~le~~~~~~~~~l~g~~~~~~~~~~~~~t~~~~~~~l~a~~~~~~~~~~vi~~~~~H~s~~~a~~~~---g~~~~~v~~ 169 (445)
T d3bc8a1 93 NKITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTA---GFEPVVIEN 169 (445)
T ss_dssp HHHHHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHT---TCEEEEECC
T ss_pred HHHHHHHHHHHHHHhCCCcccCccccccchHHHHHHHHHHHHHhCCCCCEEEEcCcccHHHHHHHHHc---CCeeEEEEe
Confidence 4456677888999999854 457788888865555444433333457899999999999999888877 999888864
Q ss_pred ---CCCCCcChhHHHhhcc----CCceEEEEeccccccccccChHHHHHHhhhcCCEEEEecccccCcccc------cCC
Q psy15216 1515 ---KNNGLITLSQLEEKIC----SDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDI------NIQ 1581 (2602)
Q Consensus 1515 ---~~~~~id~d~l~~~i~----~~t~lv~l~~~~n~tG~~~~l~~I~~ia~~~gi~vivD~a~~~g~~~~------~l~ 1581 (2602)
+.++.+|+++|+++|. ++|.+|++++++|++|.+.|+++|+++|++||+++|+|+||+.+.... +..
T Consensus 170 ~~~~~~~~id~~~l~~~i~~~~~~~~~~v~~~~~~~~~G~~~~~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~ 249 (445)
T d3bc8a1 170 VLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGAR 249 (445)
T ss_dssp EEETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHH
T ss_pred eccCcccccCHHHHHHHHHhccccCeEEEEEeCCCCCCeeehhHHHHHHHHHHhCCcEEEEccchhhhhhccccchhccC
Confidence 4567899999999985 468899999999999999999999999999999999999998765321 122
Q ss_pred CCCccEEEEcccc-ccCCCceEEEEEecCC-CCccccccccCCccccCCCCCcchhHHHHHHHHHH-HHHHHHHHHHHHH
Q psy15216 1582 NYKVDLMSFSAHK-IYGPKGIGALYIRRNP-RTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFR-LARIEMKEELKRI 1658 (2602)
Q Consensus 1582 ~~~~D~~v~S~~K-~~gp~G~G~l~~~~~~-~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~-~~~~~~~~~~~~~ 1658 (2602)
-.++|++++|+|| +++|.|.|+++.++.. .+.+...+.+ ...+++.. .+..++. +...++.....+.
T Consensus 250 ~~~vd~~~~s~hK~~~~p~g~~~l~~~~~~~~~~~~~~~~~------~~~~~~~~----~~~~~~~~~g~~~~~~~~~~~ 319 (445)
T d3bc8a1 250 VGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKMYPG------RASASPSL----DVLITLLSLGCSGYRKLLKER 319 (445)
T ss_dssp HSCCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHHHHHSCS------CBCSHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcceEEecCccccccCCCCceeeeCChHHHHHHHHHHhh------cccCcchH----HHHHHHHHHhhhcchhhHHHH
Confidence 2358999999999 7789998999987532 2223222211 11122222 2223333 3345566777777
Q ss_pred HHHHHHHHHHHhhc--CCcEEEeCCCCCCCCceEEEEEec------CCcHHHHHhc--CCEEEccccccCCCCCChhHHH
Q psy15216 1659 LFLQKRLYNGLMES--IEEIYINGDMNNRIPHNLNISFNF------IEGESLLMAI--KDIAVSSGSACTSASLEPSYVL 1728 (2602)
Q Consensus 1659 ~~l~~~l~~~L~~~--~~gl~i~~~~~~~~~~~~~~~~~~------~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~ 1728 (2602)
..+.+++.+.|.+. ..+..+...+.. +....+.+.. .+...+...| .+|.......+........+..
T Consensus 320 ~~~~~~~~~~L~~l~~~~~~~~l~~~~~--~~~~~~~l~~~~~~~~~~~~~l~~~L~~~gI~~~~~~~~~~~~~i~~~~~ 397 (445)
T d3bc8a1 320 KEMFVYLSTQLKKLAEAHNERLLQTPHN--PISLAMTLKTIDGHHDKAVTQLGSMLFTRQVSGARAVPLGNVQTVSGHTF 397 (445)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCBCCCTTC--SSEEEEECTTTSSSSSCHHHHHHHHHHHTTCCSCEEECSCCEEEETTEEE
T ss_pred HHHHHHHHHHHHHHHhhcCceeecCCCC--CcceEEEeeeccccCCCCHHHHHHHHHHcCCCcceeeccccccchhhhhh
Confidence 77777777777651 123333332222 2233333322 1223344444 3432111111110000000111
Q ss_pred HHcCC-CccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1729 RALGC-NDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1729 ~~~~~-~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
..++. .+.....++|++++.++|.+|||+++++|++.
T Consensus 398 ~~~g~~~~~~~~~~i~i~~~~~~T~eDID~~v~~L~ki 435 (445)
T d3bc8a1 398 RGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKC 435 (445)
T ss_dssp ETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred hhcCCCCccCCCCeEEEeCcCCCCHHHHHHHHHHHHHH
Confidence 11121 12233467999999999999999999999983
|
| >d1su0b_ d.224.1.2 (B:) IscU homolog SPy0289 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: SufE/NifU superfamily: SufE/NifU family: NifU/IscU domain domain: IscU homolog SPy0289 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.73 E-value=1.3e-18 Score=183.08 Aligned_cols=86 Identities=33% Similarity=0.560 Sum_probs=79.3
Q ss_pred hhhhhHhhhhcccCCCCCCCCCCCCCcceeeeeCCCCcccEEEEEEEEcCCCceEeeeeeccccchhHhhHHHHHHHHcC
Q psy15216 372 FMSYSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKTYGCGSAIASSSLVTEWVKG 451 (2602)
Q Consensus 372 ~~~y~~~~~~hy~~p~n~g~~~~~~~~~~~~~~~~~~cgd~~~~~~~~~~~~~i~~~~~~~~gc~~~~a~~s~~~~~~~g 451 (2602)
.++|++.++|||+||+|.|.+++++ .+..+||.|||.|+|+++|+ +++|+|++|.|+||++++||||+++++++|
T Consensus 2 ~~lY~~~Ildh~~nP~n~g~l~~~~----~~~~~Np~CGD~i~i~l~i~-~~~I~di~f~~~GCai~~ASasil~e~i~g 76 (136)
T d1su0b_ 2 NHLYMAVVADHSKRPHHHGQLDGVE----AVQLNNPTCGDVISLTVKFD-EDKIEDIAFAGNGCTISTASSSMMTDAVIG 76 (136)
T ss_dssp CHHHHHHHHHHHHSCSSBSCCTTCC----CEEEECSSSCCEEEEEEEES-SSSEEEEEEEEECCHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHhCCCCCCCCCCCC----eeeecCCCCCCEEEEEEEEc-CCeeeEEEEEeccCHHHHHHHHHHHHHHhC
Confidence 5799999999999999999998765 24567999999999999995 679999999999999999999999999999
Q ss_pred CChhhhhhccc
Q psy15216 452 KTLDEAMSIKN 462 (2602)
Q Consensus 452 ~~~~e~~~i~~ 462 (2602)
|+++++..+.+
T Consensus 77 k~~~e~~~l~~ 87 (136)
T d1su0b_ 77 KSKEEALALAD 87 (136)
T ss_dssp CCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99999998864
|
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Probab=99.72 E-value=1.9e-16 Score=201.11 Aligned_cols=317 Identities=15% Similarity=0.138 Sum_probs=222.1
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCC
Q psy15216 1404 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK 1483 (2602)
Q Consensus 1404 ~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd 1483 (2602)
...+.++++..+.++.+...+.. ............++++.+++++|.+ .+++++++++|+..++.++. +++|
T Consensus 59 ~~hp~v~~a~~~a~~~~g~~~~~--sr~~~g~~~~~~~lE~~lA~~~g~e--~al~~~SG~~An~~~i~~l~----~~~d 130 (401)
T d1fc4a_ 59 ANHPDLIAAAKAGMDSHGFGMAS--VRFICGTQDSHKELEQKLAAFLGME--DAILYSSCFDANGGLFETLL----GAED 130 (401)
T ss_dssp TTCHHHHHHHHHHHHHHCSCCCS--CHHHHCCBHHHHHHHHHHHHHHTCS--EEEEESCHHHHHHTTHHHHC----CTTC
T ss_pred cCCHHHHHHHHHHHHHhCCCccc--ceeeccCcHHHHHHHHHHHHhhcCC--ceEEecchhhhhHHHHHHhc----CCCc
Confidence 44789999999999875433332 2333333467789999999999964 78999999999999999887 8999
Q ss_pred EEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhcc------CCceEEEEeccccccccccChHHHHHH
Q psy15216 1484 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKIC------SDTILVSVMLVNNEIGVIQPILEIGEL 1557 (2602)
Q Consensus 1484 ~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~------~~t~lv~l~~~~n~tG~~~~l~~I~~i 1557 (2602)
.|++....|+++...+... ++++..++. .|++++++.+. +.+.+|++.++.++.|.+.|+++|.++
T Consensus 131 ~i~~d~~~h~s~~~G~~~~---~a~~~~~~~-----~d~~~le~~~~~~~~~~~~~~liv~egv~s~~G~~~~L~~l~~L 202 (401)
T d1fc4a_ 131 AIISDALNHASIIDGVRLC---KAKRYRYAN-----NDMQELEARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDL 202 (401)
T ss_dssp EEEEETTCCHHHHHHHHTS---CSEEEEECT-----TCHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECCHHHHHHH
T ss_pred EEEeCCcchHHHHcccccc---CceEEEEcC-----CChHHHHHHHHHhhhcccCceEEEEcCCCCCCCchhhhhHHHHH
Confidence 9999999999987655543 777776653 36666666552 345789999999999999999999999
Q ss_pred hhhcCCEEEEecccccCcccccC-------C-CCCccEEEEcccccc-CCCceEEEEEecCCCCccccccccCCccccCC
Q psy15216 1558 CRSKGVIFHCDAAQAVGKIDINI-------Q-NYKVDLMSFSAHKIY-GPKGIGALYIRRNPRTRIEAQIHGGGHEYGLR 1628 (2602)
Q Consensus 1558 a~~~gi~vivD~a~~~g~~~~~l-------~-~~~~D~~v~S~~K~~-gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~ 1628 (2602)
|++||+++++|++|+.|.....- . ...+|+++.|++|.+ |+.| |++..++++++.++..-.+ ...
T Consensus 203 ~~~~~a~LivDeah~~g~~g~~G~G~~~~~~~~~~~dii~~tl~Ka~gg~~G-g~v~g~~~~~~~l~~~~~~-----~~~ 276 (401)
T d1fc4a_ 203 ADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKALGGASG-GYTAARKEVVEWLRQRSRP-----YLF 276 (401)
T ss_dssp HHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSSSC-EEEEECHHHHHHHHHHCHH-----HHH
T ss_pred HhhcCcEEEehhhhccccccCCCCccchhccCCCCCeEEEeecccccccCCc-ccccCCHHHHHHHHcCChh-----hhh
Confidence 99999999999999987643211 0 124799999999955 5655 8888887766555321100 011
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEec-CCcHHHHHhc-
Q psy15216 1629 SGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGESLLMAI- 1706 (2602)
Q Consensus 1629 ~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~L- 1706 (2602)
+...++....+...+++.... .++.+++..++..++++.+.. .++.+.... .| +..+.+.. .....+...|
T Consensus 277 s~~l~p~~~~aa~~~l~~~~~-~~~~~~~l~~~~~~~~~~l~~--~g~~~~~~~---~p-Iv~v~~~~~~~a~~~~~~L~ 349 (401)
T d1fc4a_ 277 SNSLAPAIVAASIKVLEMVEA-GSELRDRLWANARQFREQMSA--AGFTLAGAD---HA-IIPVMLGDAVVAQKFARELQ 349 (401)
T ss_dssp SCCCCHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHH--TTCCBCCSS---SS-EEEEEEECHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHhhhccccc-CHHHHHHHHHHHHHHHhhhcc--cCCccCCCC---CC-EEEEEECCHHHHHHHHHHHH
Confidence 233444555555566664332 467788999999999999987 344433221 12 22233321 1223455555
Q ss_pred -CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1707 -KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1707 -~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
+||.+.+-..+..+ .....||++++..+|.+|||+++++|++.
T Consensus 350 ~~Gi~v~~i~~PtVp----------------~g~~~lRi~~~a~hT~edId~~v~al~ev 393 (401)
T d1fc4a_ 350 KEGIYVTGFFYPVVP----------------KGQARIRTQMSAAHTPEQITRAVEAFTRI 393 (401)
T ss_dssp HTTEECCEECTTSSC----------------TTCEEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred HCCceEEeECCCCCC----------------CCCceEEEEECCCCCHHHHHHHHHHHHHH
Confidence 89998754332211 11256999999999999999999999985
|
| >d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 5-aminolevulinate synthase species: Rhodobacter capsulatus [TaxId: 1061]
Probab=99.72 E-value=6.2e-17 Score=202.37 Aligned_cols=318 Identities=16% Similarity=0.125 Sum_probs=224.3
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCC
Q psy15216 1404 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK 1483 (2602)
Q Consensus 1404 ~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd 1483 (2602)
...+.++++..+.++.+..... ....-........++++++|+++|.+ ..++.+++..|+..++.++.. ..++|
T Consensus 59 ~~~p~v~~a~~~al~~yG~gs~--~Sr~~~G~~~~h~~LE~~lA~~~g~e--~all~~sG~~An~~~i~~l~~--~~~~d 132 (396)
T d2bwna1 59 GQHPVVLAAMHEALEAVGAGSG--GTRNISGTTAYHRRLEAEIAGLHQKE--AALVFSSAYNANDATLSTLRV--LFPGL 132 (396)
T ss_dssp GGCHHHHHHHHHHHHHHCSCCC--SBTTTBCCBHHHHHHHHHHHHHTTCS--EEEEESCHHHHHHHHHHHHHH--HSTTC
T ss_pred CCCHHHHHHHHHHHHHhCCCcc--ccccccCCchHHHHHHHHHHHHhCCC--ceeeeecchHHHHHHHHHHhc--ccCCC
Confidence 5678999999999987432221 22223333457889999999999964 678888899999888888741 26899
Q ss_pred EEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhcc----CCceEEEEeccccccccccChHHHHHHhh
Q psy15216 1484 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKIC----SDTILVSVMLVNNEIGVIQPILEIGELCR 1559 (2602)
Q Consensus 1484 ~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~----~~t~lv~l~~~~n~tG~~~~l~~I~~ia~ 1559 (2602)
.|+.....|.+.....+.. +++++.++-+ |++++++.+. .++++|++.++.++.|.+.|+++|.++++
T Consensus 133 ~i~~D~~~Hasi~~g~~ls---~a~~~~f~Hn-----d~~~l~~l~~~~~~~~~~~iv~egvySmdGd~apl~~l~~L~~ 204 (396)
T d2bwna1 133 IIYSDSLNHASMIEGIKRN---AGPKRIFRHN-----DVAHLRELIAADDPAAPKLIAFESVYSMDGDFGPIKEICDIAE 204 (396)
T ss_dssp EEEEETTCCHHHHHHHHHS---CCCEEEECTT-----CHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBCCHHHHHHHHH
T ss_pred ceeehhhhhhccchhhhcc---ccCceEeecc-----hHHHhhhHHhhhcccCceeEEEEeeccCcccccccHhHHHHhh
Confidence 9999999998877666544 7888877543 5666666553 35679999999999999999999999999
Q ss_pred hcCCEEEEecccccCcccc---------cCCCCCccEEEEccccccCCCceEEEEEecCCCCccccccccCCccccCCCC
Q psy15216 1560 SKGVIFHCDAAQAVGKIDI---------NIQNYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSG 1630 (2602)
Q Consensus 1560 ~~gi~vivD~a~~~g~~~~---------~l~~~~~D~~v~S~~K~~gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~g 1630 (2602)
+||+++++|+||++|..-- ++. ...|+++.|++|.+|..| |++..++++++.++..-. ....++
T Consensus 205 ~y~~~L~vDeAHs~Gv~G~~G~G~~~~~~~~-~~~di~~gTlsKa~g~~G-g~v~~~~~~i~~l~~~~~-----~~ifSt 277 (396)
T d2bwna1 205 EFGALTYIDEVHAVGMYGPRGAGVAERDGLM-HRIDIFNGTLAKAYGVFG-GYIAASARMVDAVRSYAP-----GFIFST 277 (396)
T ss_dssp HHTCEEEEECTTTTTTSSTTSCCHHHHHTCG-GGCSEEEEESSSTTCSCC-EEEEECHHHHHHHHHHCH-----HHHTSB
T ss_pred hhcceeeeccceeeeeeccccccchhhcCCc-eeeeeeeecccccccccc-cccchhHHHHHHHHhhcc-----hhhhcc
Confidence 9999999999999987532 121 236999999999998887 899988876666542110 011234
Q ss_pred CcchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEec-CCcHHHHHh-c-
Q psy15216 1631 TLATHQIVGMGEAFRLAR-IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGESLLMA-I- 1706 (2602)
Q Consensus 1631 t~~~~~~~al~~aL~~~~-~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~-L- 1706 (2602)
.++++...+..++++... ...+..+.+...+.+++++.+.+ .++.+.... .|. ..+.+.. .....+... |
T Consensus 278 alpp~~~aa~~~al~i~~~~~~~~~r~~l~~~~~~~~~~l~~--~g~~~~~~~---spI-vpv~ig~~~~~~~~a~~lL~ 351 (396)
T d2bwna1 278 SLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKA--LGMPIIDHG---SHI-VPVVIGDPVHTKAVSDMLLS 351 (396)
T ss_dssp CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH--HTCCBCCCS---SSC-EEEECCCHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHh--cCCCcCCCC---CCE-EEEEeCCHHHHHHHHHHHHH
Confidence 556666667777777554 33556677778888899998877 344443221 222 2222221 122334444 3
Q ss_pred -CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1707 -KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1707 -~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
+||.+.+...+..+ .....+|++++..+|.+|||+++++|++
T Consensus 352 e~Gi~v~~i~~PtVp----------------~g~~rlRi~lsa~ht~edId~l~~~L~~ 394 (396)
T d2bwna1 352 DYGVYVQPINFPTVP----------------RGTERLRFTPSPVHDLKQIDGLVHAMDL 394 (396)
T ss_dssp HHCEECCEECTTTSC----------------TTCCEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred hCCEEEEEECCCcCC----------------CCCeeEEEEeCccCCHHHHHHHHHHHHH
Confidence 58988765443322 1235699999999999999999999997
|
| >d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Citrobacter freundii [TaxId: 546]
Probab=99.72 E-value=5.7e-16 Score=190.93 Aligned_cols=310 Identities=13% Similarity=0.105 Sum_probs=216.1
Q ss_pred cchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHHH-HHhCCc
Q psy15216 33 HIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDGF 111 (2602)
Q Consensus 33 ~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~-~~~~G~ 111 (2602)
+.|++...+..+.+++.+|.+.|.. ..++.+|+..|+..++.++. ++||+|+++..-|......... +.+.|+
T Consensus 55 ~~Y~R~~nPT~~~LE~~la~LEgg~--~a~~~sSGmaAi~~~l~~ll----~~Gd~vi~~~~~Yg~t~~~~~~~l~~~Gi 128 (397)
T d1y4ia1 55 YIYTRLGNPTTDALEKKLAVLERGE--AGLATASGISAITTTLLTLC----QQGDHIVSASAIYGCTHAFLSHSMPKFGI 128 (397)
T ss_dssp SCCCTTSCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHC----CTTCEEEEESSSCHHHHHHHHTHHHHTTC
T ss_pred ceeeCCCCHHHHHHHHHHHHHhCCc--cceeehHHHHHHHHHHhhcc----CCCCeeeeecccccccchhhhcccCCCce
Confidence 4566666678899999999999965 56788889999999999988 8999999999999998887754 578899
Q ss_pred EEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHhcCCEEEEecccccccccccCCCCCccE
Q psy15216 112 RVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDL 191 (2602)
Q Consensus 112 ~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~~g~~livD~a~a~g~~~~dl~~~~~D~ 191 (2602)
++.+++.. |++.++++++++||+|++..|.||+..+.|+++|+++||++|+++++|.+.+.+...-+ -++|+|+
T Consensus 129 ~~~~vd~~-----d~~~~~~~i~~~Tklv~~Esp~NP~l~v~Di~~i~~iA~~~gi~~vvDnT~atP~~~~P-l~~GaDi 202 (397)
T d1y4ia1 129 NVRFVDAG-----KPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQQP-LQLGADI 202 (397)
T ss_dssp EEEEECTT-----SHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCG-GGGTCSE
T ss_pred EeeccCCC-----CHHHHHHhcCCCCcEEEecCCcccceeecccHHHHHHhhcCCceEEecCcccCcccCcc-hhcCCCE
Confidence 99999754 78999999999999999999999999999999999999999999999999877654322 3468999
Q ss_pred EEeccccccCCCC---cEEEEEecCCCCcccceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy15216 192 MSFSAHKIYGPKG---IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKR 268 (2602)
Q Consensus 192 ~~~S~~K~~Gp~G---~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~ 268 (2602)
++.|.+|..|..+ .|.++++++.+.+.+-.. .+....+.++....+.+..+|+- +.-+.++..+++..
T Consensus 203 vihS~TKyi~Ghsdvl~G~v~~~~~~~~~~r~~~-----~~~~~G~~l~p~~a~l~~rgl~T----L~lRm~~~~~nA~~ 273 (397)
T d1y4ia1 203 VVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVG-----LKDITGGCMSPFNAWLTLRGVKT----LGIRMERHCENALK 273 (397)
T ss_dssp EEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTH-----HHHTTCCCCCHHHHHHHHHHHTT----HHHHHHHHHHHHHH
T ss_pred EEEehhhhcCCCcceeeeccCCCHHHHHHHHHHH-----HHhCcCCcCCHHHHHHHHcCcCc----HHHHHHHHHHHHHH
Confidence 9999999766555 688888876544322100 01122345555555555455553 34455566666677
Q ss_pred HHHHHhhccCceE-EeCCC--CCC-----------CCceEEEEEcc-c-ChhHHHHHhC--CeEEcccccCC----CC--
Q psy15216 269 LYNGLMESIEEIY-INGDM--NNR-----------IPHNLNISFNF-I-EGESLLMAIK--DIAVSSGSACT----SA-- 324 (2602)
Q Consensus 269 l~~~L~~~~~g~~-l~~~~--~~~-----------~~~~~~~~~~~-~-~~~~~~~~L~--gI~v~~g~~~~----~~-- 324 (2602)
+.+.|++ .|.+. ++-|. ++. ....+.|.+.+ . ....+++.|+ ++.++-|..-+ +.
T Consensus 274 lA~~L~~-hp~V~~V~yPgl~s~p~h~~~~~~~~g~gg~~sf~~~~~~~~~~~f~~~L~l~~~a~SlGg~eSLi~~p~~~ 352 (397)
T d1y4ia1 274 IARFLEG-HPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGGLEAGRRMINSVELCLLAVSLGDTETLIQHPASM 352 (397)
T ss_dssp HHHHHHT-CTTEEEEECTTSTTCTTHHHHHHHCSSCCSEEEEEETTHHHHHHHHHHTCSSSEECSCCSCSSCEEECTTTT
T ss_pred HHHHHHh-CCCcCeEeCCCCCCCccccccccccCCCCeEEEEEecCCHHHHHHHHHcCCccceeeccCcccceeeCcccc
Confidence 7777766 56654 32221 110 12233444433 1 2346666663 33334343211 10
Q ss_pred -C-CChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 325 -S-LEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 325 -~-~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
| ..+.......|+++ +.||+|+|....++-++.+-++|++
T Consensus 353 th~~~~~e~r~~~Gi~~----~liRlsvGlEd~~DLi~Dl~~AL~~ 394 (397)
T d1y4ia1 353 THSPVAPEERLKAGITD----GLIRLSVGLEDPEDIINDLEHAIRK 394 (397)
T ss_dssp TTSSSCHHHHHHTTCCT----TEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHcCCCc----CEEEEEeccCCHHHHHHHHHHHHHH
Confidence 1 12334456677764 8999999987766666676666664
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.72 E-value=1.1e-17 Score=218.67 Aligned_cols=319 Identities=14% Similarity=0.086 Sum_probs=203.7
Q ss_pred HHHHHHHHHHHHHhCCCC-CcEEEeCCHHHHHHHH-HHhcccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEecc
Q psy15216 41 KAIEKARNEVAQLIYADP-REIIWTSGATESNNLA-IKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP 118 (2602)
Q Consensus 41 ~~~~~~r~~lA~~~g~~~-~~Iv~t~g~T~al~~~-~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~ 118 (2602)
.+..++.+++++++|.+. ...++++++|++...+ +.++. ....++++|+++...|+++..++..+ |++++.|++
T Consensus 94 ~le~~~~~~~~~l~g~~~~~~~~~~~~~t~~~~~~~l~a~~-~~~~~~~~vi~~~~~H~s~~~a~~~~---g~~~~~v~~ 169 (445)
T d3bc8a1 94 KITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLR-HKRPKAKYIIWPRIDQKSCFKSMVTA---GFEPVVIEN 169 (445)
T ss_dssp HHHHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHH-HHCTTCCEEEEECCCCHHHHHHHHHT---TCEEEEECC
T ss_pred HHHHHHHHHHHHHhCCCcccCccccccchHHHHHHHHHHHH-HhCCCCCEEEEcCcccHHHHHHHHHc---CCeeEEEEe
Confidence 455667788999999865 3577788777655444 44432 22356789999999999999998887 999888864
Q ss_pred ---CCCCccChHHHHhhcc----CCceEEEEecccCcccccccHHHHHHHHHhcCCEEEEeccccccccc------ccCC
Q psy15216 119 ---KNNGLITLSQLEEKIC----SDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKID------INIQ 185 (2602)
Q Consensus 119 ---~~~~~ld~e~l~~~i~----~~tklv~i~~~~npTG~~~~l~~I~~la~~~g~~livD~a~a~g~~~------~dl~ 185 (2602)
++++.+|+++|+++|+ +++.+|++++++|++|.+.|+++|+++|++||+++|+|+||+.+... .+..
T Consensus 170 ~~~~~~~~id~~~l~~~i~~~~~~~~~~v~~~~~~~~~G~~~~~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~ 249 (445)
T d3bc8a1 170 VLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGAR 249 (445)
T ss_dssp EEETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHH
T ss_pred eccCcccccCHHHHHHHHHhccccCeEEEEEeCCCCCCeeehhHHHHHHHHHHhCCcEEEEccchhhhhhccccchhccC
Confidence 4568899999999885 46889999999999999999999999999999999999999876432 1222
Q ss_pred CCCccEEEecccc-ccCCCCcEEEEEecCC-CCcccceecCCCccccccccCcchhHHHHHHHHHH-HHHHhHHHHHHHH
Q psy15216 186 NYKVDLMSFSAHK-IYGPKGIGALYIRRNP-RTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFR-LARIEMKEELKRI 262 (2602)
Q Consensus 186 ~~~~D~~~~S~~K-~~Gp~G~G~l~~~~~~-~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~-~~~~~~~~~~~~~ 262 (2602)
-.++|++++|+|| +++|.|.|+++.++.. .+.+.+.+.++ ..+++... +.+++. +...++.....+.
T Consensus 250 ~~~vd~~~~s~hK~~~~p~g~~~l~~~~~~~~~~~~~~~~~~------~~~~~~~~----~~~~~~~~g~~~~~~~~~~~ 319 (445)
T d3bc8a1 250 VGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKMYPGR------ASASPSLD----VLITLLSLGCSGYRKLLKER 319 (445)
T ss_dssp HSCCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHHHHHSCSC------BCSHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcceEEecCccccccCCCCceeeeCChHHHHHHHHHHhhc------ccCcchHH----HHHHHHHHhhhcchhhHHHH
Confidence 2358999999999 6678898999887532 22333222111 12222222 223333 3335566777777
Q ss_pred HHHHHHHHHHHhhc--cCceEEeCCCCCCCCceEEEEEcc------cChhHHHHHh--CCeEEcccccCCCCCCChHHHH
Q psy15216 263 LFLQKRLYNGLMES--IEEIYINGDMNNRIPHNLNISFNF------IEGESLLMAI--KDIAVSSGSACTSASLEPSYVL 332 (2602)
Q Consensus 263 ~~l~~~l~~~L~~~--~~g~~l~~~~~~~~~~~~~~~~~~------~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~ 332 (2602)
..+++++.+.|.+. ..+..+...+.. +....+.+.. .+...+...| .+|.......+........+.+
T Consensus 320 ~~~~~~~~~~L~~l~~~~~~~~l~~~~~--~~~~~~~l~~~~~~~~~~~~~l~~~L~~~gI~~~~~~~~~~~~~i~~~~~ 397 (445)
T d3bc8a1 320 KEMFVYLSTQLKKLAEAHNERLLQTPHN--PISLAMTLKTIDGHHDKAVTQLGSMLFTRQVSGARAVPLGNVQTVSGHTF 397 (445)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCBCCCTTC--SSEEEEECTTTSSSSSCHHHHHHHHHHHTTCCSCEEECSCCEEEETTEEE
T ss_pred HHHHHHHHHHHHHHHhhcCceeecCCCC--CcceEEEeeeccccCCCCHHHHHHHHHHcCCCcceeeccccccchhhhhh
Confidence 77888888877651 124444433332 2333344332 1223444444 3442211111111000000011
Q ss_pred HHcCCC-ccCCCCeEEEecCCCCCHHHHHHHHHHHHhhhhhhhhhH
Q psy15216 333 RALGCN-DELAHSSIRFTIGRFTTEKEIDFTIKLLKMKEFFMSYSE 377 (2602)
Q Consensus 333 ~~~g~~-~~~~~~~iRis~~~~~t~edid~li~~L~~~~~~~~y~~ 377 (2602)
..++.. +.....++|++++.++|++|||+++++|++. ...|++
T Consensus 398 ~~~g~~~~~~~~~~i~i~~~~~~T~eDID~~v~~L~ki--lk~~rk 441 (445)
T d3bc8a1 398 RGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKC--LNIVRK 441 (445)
T ss_dssp ETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHH--HHHHHH
T ss_pred hhcCCCCccCCCCeEEEeCcCCCCHHHHHHHHHHHHHH--HHHHHh
Confidence 112221 2233467999999999999999999999974 344544
|
| >d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) species: Amycolatopsis mediterranei [TaxId: 33910]
Probab=99.72 E-value=9.2e-17 Score=204.01 Aligned_cols=330 Identities=13% Similarity=0.117 Sum_probs=224.6
Q ss_pred CCHHHHHHHHHHHhhh--cCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCC
Q psy15216 9 IDPRVVDKMIPYLRVQ--FGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRG 86 (2602)
Q Consensus 9 ~p~~v~~a~~~~l~~~--~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~g 86 (2602)
.....++++.+.+.+. +.+.+ +..+++++++|+++|.+ ++++++|+|.||.+++.++. +++|
T Consensus 11 ~~~~~~~~~~~~l~~g~~~~~~g-----------~~v~~fE~~~a~~~g~~--~~v~~~SGt~Al~lal~~l~---~~~g 74 (384)
T d1b9ha_ 11 YDDAERNGLVRALEQGQWWRMGG-----------DEVNSFEREFAAHHGAA--HALAVTNGTHALELALQVMG---VGPG 74 (384)
T ss_dssp CCHHHHHHHHHHHHTSCCBTTTC-----------SHHHHHHHHHHHHTTCS--EEEEESCHHHHHHHHHHHTT---CCTT
T ss_pred CCHHHHHHHHHHHHcCCeeecCC-----------HHHHHHHHHHHHHHCcC--eEEEeCCHHHHHHHHHHHcC---CCCC
Confidence 4566788888888752 12222 25788999999999976 78999999999999999986 5899
Q ss_pred CEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCC-CCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHhc
Q psy15216 87 KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSK 165 (2602)
Q Consensus 87 d~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~-~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~~ 165 (2602)
|+|++|+.+|+++..++... |++++++++++ ++.+|++.+++.++++|++|+++|. .|...++++|.++|+++
T Consensus 75 deVi~p~~t~~a~~~ai~~~---g~~p~~~d~~~~~~~~d~~~~~~~i~~~tk~i~~~~~---~g~~~d~~~i~~~~~~~ 148 (384)
T d1b9ha_ 75 TEVIVPAFTFISSSQAAQRL---GAVTVPVDVDAATYNLDPEAVAAAVTPRTKVIMPVHM---AGLMADMDALAKISADT 148 (384)
T ss_dssp CEEEEESSSCTHHHHHHHHT---TCEEEEECBCTTTCCBCHHHHHHHCCTTEEEECCBCG---GGCCCCHHHHHHHHHHH
T ss_pred CEEEEecccccccccccccc---ccccccccccccccccchhhhcccccccccccccccc---cccccccccchhhhhhh
Confidence 99999999999998888766 99999999876 6789999999999999999987666 89999999999999999
Q ss_pred CCEEEEecccccccccccCCC---CC-ccEEEeccccccCCCCcEEEEEec-CCCCcccceecCC-Cc---ccccc---c
Q psy15216 166 GVIFHCDAAQAVGKIDINIQN---YK-VDLMSFSAHKIYGPKGIGALYIRR-NPRTRIEAQIHGG-GH---EYGLR---S 233 (2602)
Q Consensus 166 g~~livD~a~a~g~~~~dl~~---~~-~D~~~~S~~K~~Gp~G~G~l~~~~-~~~~~l~~~~~g~-~~---~~~~~---~ 233 (2602)
++++|.|++|+.|... +-.. ++ ..++.++.+|..+..+.|+++.++ ++.+.++.....+ .. ...+. .
T Consensus 149 ~i~lieD~a~a~ga~~-~g~~~g~~g~~~~~Sf~~~K~i~~g~GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 227 (384)
T d1b9ha_ 149 GVPLLQDAAHAHGARW-QGKRVGELDSIATFSFQNGKLMTAGEGGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHKIA 227 (384)
T ss_dssp TCCBCEECTTCTTCEE-TTEEGGGSSSCEEEECCTTSSSCSSSCEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCCSC
T ss_pred hhhhhhhhceeccccc-CCEecCcccccceecccccccccccccchhhhhhHHHHHHHHHHHhcCCCCcccccccccccc
Confidence 9999999999998752 2211 12 234445557855433347666654 4444443332211 11 01110 1
Q ss_pred c-CcchhHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCC---CCCceEEEEEccc---ChhH
Q psy15216 234 G-TLATHQIVGMGEAFRL-ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNN---RIPHNLNISFNFI---EGES 305 (2602)
Q Consensus 234 g-t~~~~~~~al~~al~~-~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~---~~~~~~~~~~~~~---~~~~ 305 (2602)
| ......+ .+|+-. ....+++..++.+++.+++.+.|++ ++++.....+.. ...+...+.++.. +.+.
T Consensus 228 G~n~rms~l---~Aaig~~qL~~ld~~~~~R~~~~~~y~~~L~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rd~ 303 (384)
T d1b9ha_ 228 GSNMRLNEF---SASVLRAQLARLDEQIAVRDERWTLLSRLLGA-IDGVVPQGGDVRADRNSHYMAMFRIPGLTEERRNA 303 (384)
T ss_dssp CCBCBCBHH---HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHT-STTCEECCCCTTCCBCCCSEEEEECTTCCHHHHHH
T ss_pred ccccccccc---hhhhhhhhhhhcccchhhhhhhhhhhhhhhhc-ccccccccccccccccccccccceecccccccHHH
Confidence 1 1111112 222221 1245788888899999999999987 788765432221 1223344444433 2346
Q ss_pred HHHHh--CCeEEcccccCCCCCCChHHHHHHcCC--------------CccCCCCeEEEecCCCCC-HHHHHHHHHHHHh
Q psy15216 306 LLMAI--KDIAVSSGSACTSASLEPSYVLRALGC--------------NDELAHSSIRFTIGRFTT-EKEIDFTIKLLKM 368 (2602)
Q Consensus 306 ~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~--------------~~~~~~~~iRis~~~~~t-~edid~li~~L~~ 368 (2602)
+.+.| +||.++.. |.|-|.++.+ ..+|. .+....+.|+++++.+.| ++|++++++.|++
T Consensus 304 l~~~L~~~GI~~~~~--y~plh~~~~~--~~~~~~~~~~~~~~~~~Pna~~l~~~~l~LP~~~~Lt~e~ei~~I~~~i~~ 379 (384)
T d1b9ha_ 304 LVDRLVEAGLPAFAA--FRAIYRTDAF--WELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPELHATAEIIAD 379 (384)
T ss_dssp HHHHHHHTTCCEEEC--CCCGGGSHHH--HHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCeeee--CcchhcCHHH--HhcCCCcccccccccCCHHHHHHHhCEEEccCCCCCCCHHHHHHHHHHHHH
Confidence 78888 78887653 4443344333 22222 222334679999998877 6799999999997
Q ss_pred h
Q psy15216 369 K 369 (2602)
Q Consensus 369 ~ 369 (2602)
.
T Consensus 380 ~ 380 (384)
T d1b9ha_ 380 A 380 (384)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Prokaryotic actin homolog MreB species: Thermotoga maritima [TaxId: 2336]
Probab=99.72 E-value=2.7e-18 Score=197.45 Aligned_cols=178 Identities=13% Similarity=0.145 Sum_probs=130.4
Q ss_pred ccceEEEEEeCCceEEEEEEEEECCEEEEEEEecCCCCcchHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHH-Hc
Q psy15216 816 FEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKE-LL 894 (2602)
Q Consensus 816 ~~~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~l~~~~e~~K~-~L 894 (2602)
++..+||||+||||||+|+++..+. ...+....||.+++..+..++...+...... ............++. ..
T Consensus 5 ~~~gvlV~DiGGGT~Dvsi~~~g~~-----~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 78 (196)
T d1jcea2 5 EPSGNMVVDIGGGTTEVAVISLGSI-----VTWESIRIAGDEMDEAIVQYVRETYRVAIGE-RTAERVKIEIGNVFPSKE 78 (196)
T ss_dssp SSSCEEEEEECSSCEEEEEEETTEE-----EEEEEESCSHHHHHHHHHHHHHHHHCEECCH-HHHHHHHHHHCBCSCCHH
T ss_pred CCCceEEEEcCCCcEEEEEEEcCCE-----eEEeeecCCCcccccchhhhhhhhhcccccc-hhHHHHHHHHhhhhhhhh
Confidence 4568999999999999999986542 2234467899999999999998876433321 111111111110000 00
Q ss_pred ccccceEEEEE-ecCCceEEEEeCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc---ccceEEEecCccchHHHHHHHH
Q psy15216 895 SYQSSVKLNVK-LSDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIK---DINNVILVGGSTRMKHIHEGVS 970 (2602)
Q Consensus 895 S~~~~~~~~i~-~~~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~a~~~~~---~i~~V~LvGG~sr~P~v~~~l~ 970 (2602)
+......+... ..++......+++.++++++.++++++...+.++++.+..... .++.|+||||+|+||.|+++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~IvLvGGsS~ip~v~~~l~ 158 (196)
T d1jcea2 79 NDELETTVSGIDLSTGLPRKLTLKGGEVREALRSVVVAIVESVRTTLEKTPPELVSDIIERGIFLTGGGSLLRGLDTLLQ 158 (196)
T ss_dssp HHHCEEEEEEEETTTTEEEEEEEEHHHHHHHTHHHHHHHHHHHHHHHHTSCHHHHHHHHHHCEEEESGGGCSBTHHHHHH
T ss_pred ccccceeeeeeeccCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccceEEeCchhcchhHHHHHH
Confidence 11112233333 4556777889999999999999999999999999998765432 2567999999999999999999
Q ss_pred hhccCcccCcCCcchHhHHHHHHHhHHhc
Q psy15216 971 NFFKTTLLTSIDPDKAVVFGAAIQANFLS 999 (2602)
Q Consensus 971 ~~f~~~~~~~~~p~~aVa~GAa~~a~~l~ 999 (2602)
+.||.++..+.||++|||+|||+++..+.
T Consensus 159 ~~fg~~v~~~~~P~~aVA~GAai~~~~~~ 187 (196)
T d1jcea2 159 KETGISVIRSEEPLTAVAKGAGMVLDKVN 187 (196)
T ss_dssp HHHSSCEEECSSTTTHHHHHHHHGGGCHH
T ss_pred HHHCcCCccCCChHHHHHHHHHHHHHCHH
Confidence 99999999999999999999999875443
|
| >d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Escherichia coli [TaxId: 562]
Probab=99.70 E-value=7.4e-17 Score=195.95 Aligned_cols=330 Identities=16% Similarity=0.179 Sum_probs=234.6
Q ss_pred CCCCHHHHHHHHHHHhhcc--CCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhcc
Q psy15216 1403 TPIDPRVVDKMIPYLRVQF--GNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKK 1480 (2602)
Q Consensus 1403 ~~~~~~v~eal~~~l~~~~--~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~ 1480 (2602)
.-.++.+++++...+.+.+ |+|+...|.......++..-+.++..++||+...+|-. .|++.|+..++.+++ +
T Consensus 36 N~~S~~v~~a~~S~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~a~~anVqp-~SGs~AN~av~~All----~ 110 (416)
T d1dfoa_ 36 NYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFGADYANVQP-HSGSQANFAVYTALL----E 110 (416)
T ss_dssp CCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCC-SSHHHHHHHHHHHHC----C
T ss_pred ccCCHHHHHHhcCcccCcccCCCCCCcccCCChhHHHHHHHHHHHHHHHhCCCcceeec-ccCccHHHHHHHHhc----C
Confidence 3556789999988887754 57776555555555566666778888899986544433 578999999999997 9
Q ss_pred CCCEEEEcCCCCcchHHHHHHHH--hCCcEEEEeccCCCCCcChhHHHhhcc-CCceEEEEeccccccccccChHHHHHH
Q psy15216 1481 RGKHIITVQTEHKSVLDSIRKLE--NDGFRVTYLKPKNNGLITLSQLEEKIC-SDTILVSVMLVNNEIGVIQPILEIGEL 1557 (2602)
Q Consensus 1481 ~gd~Vlv~~~~~~s~~~~~~~~~--~~G~~v~~v~~~~~~~id~d~l~~~i~-~~t~lv~l~~~~n~tG~~~~l~~I~~i 1557 (2602)
|||.|+..++.|.++........ ....+....++++++.+|++++++.+. .++++|++.. +.....+|++++.++
T Consensus 111 pGD~Il~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~~~IDyd~l~~~a~~~kPklIi~G~--S~y~r~~d~~~~rei 188 (416)
T d1dfoa_ 111 PGDTVLGMNLAHGGHLTHGSPVNFSGKLYNIVPYGIDATGHIDYADLEKQAKEHKPKMIIGGF--SAYSGVVDWAKMREI 188 (416)
T ss_dssp TTCEEEEECTTTTCCGGGTCTTSHHHHHSEEEEECBCSSSSBCHHHHHHHHHHHCCSEEEEEC--SSCCSCCCHHHHHHH
T ss_pred CCCeeeeccccccccccccccccccCceEEEEecccCCccCccHHHHHHHHHHhccceEEecc--cccccccCHHHHHHH
Confidence 99999999999998755432221 113566667777888899999999876 5888888764 345677899999999
Q ss_pred hhhcCCEEEEecccccCcc-----cccCCCCCccEEEEcccc-ccCCCceEEEEEecC---CCCccccccccCCccccCC
Q psy15216 1558 CRSKGVIFHCDAAQAVGKI-----DINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRN---PRTRIEAQIHGGGHEYGLR 1628 (2602)
Q Consensus 1558 a~~~gi~vivD~a~~~g~~-----~~~l~~~~~D~~v~S~~K-~~gp~G~G~l~~~~~---~~~~l~~~~~g~~~~~~~~ 1628 (2602)
|++.|+++++|.+|..|.+ +-++. .+|++++|+|| +.||+| |+++.+++ +.+++....+.+ .
T Consensus 189 ad~vga~l~~D~aH~~GLIa~g~~~sP~~--~aDvvt~tThKtlrGPrg-giI~~~~~~~~~~~~i~~avfPg------~ 259 (416)
T d1dfoa_ 189 ADSIGAYLFVDMAHVAGLVAAGVYPNPVP--HAHVVTTTTHKTLAGPRG-GLILAKGGSEELYKKLNSAVFPG------G 259 (416)
T ss_dssp HHHTTCEEEEECTTTHHHHHHTSSCCCTT--TSSEEEEESSSTTCCCSC-EEEEESSCCHHHHHHHHHHHTTT------T
T ss_pred HHhcCceEEcchhhhhcceeccccCCccc--ccceeeeehhhcccCCCc-eEEEeccchHhHHHHHHhhhCcc------c
Confidence 9999999999999976543 33343 26999999999 889997 88888743 333444433322 2
Q ss_pred CCCcchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEe--cCCcHHHHHh
Q psy15216 1629 SGTLATHQIVGMGEAFRL-ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN--FIEGESLLMA 1705 (2602)
Q Consensus 1629 ~gt~~~~~~~al~~aL~~-~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 1705 (2602)
.|.+..+.++|++.+|.. ....+....++...+++.|.+.|.+ .|+.+..... -.++..+.+. +.++......
T Consensus 260 qggp~~~~iaa~Aval~Ea~~~~fk~Y~~qvv~NA~~La~~L~~--~G~~iv~ggT--dnHlvlvdl~~~~~~G~~a~~~ 335 (416)
T d1dfoa_ 260 QGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLE--RGYKVVSGGT--DNHLFLVDLVDKNLTGKEADAA 335 (416)
T ss_dssp CSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHH--TTCEEGGGSC--SSSEEEEECGGGTCCHHHHHHH
T ss_pred ccCccHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHh--CCcccccCCC--CCceeEEEecccCCCHHHHHHH
Confidence 356778999999888884 4456788999999999999999998 6888874221 2344444443 2344555445
Q ss_pred c--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCC----CCCHHHHHHHHHHHHHh
Q psy15216 1706 I--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGR----FTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1706 L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~----~~t~edid~li~~L~~~ 1765 (2602)
| .||.+..-..+..+ ......+.|||+... -..++|++++.+.|.+.
T Consensus 336 Le~~gI~~Nkn~iP~d~-------------~~~~~~SGiRiGT~a~TtrG~~e~d~~~iA~~I~~~ 388 (416)
T d1dfoa_ 336 LGRANITVNKNSVPNDP-------------KSPFVTSGIRVGTPAITRRGFKEAEAKELAGWMCDV 388 (416)
T ss_dssp HHHTTEECEECCCTTCS-------------SCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHcCeEEeCCcCCCCC-------------CCCCCCCceEeCCHHHHhCCCCHHHHHHHHHHHHHH
Confidence 5 68887643332221 011223789998654 34779999998888764
|
| >d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) species: Amycolatopsis mediterranei [TaxId: 33910]
Probab=99.70 E-value=1.6e-16 Score=201.76 Aligned_cols=331 Identities=13% Similarity=0.099 Sum_probs=221.8
Q ss_pred CHHHHHHHHHHHhhc--cCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCC
Q psy15216 1406 DPRVVDKMIPYLRVQ--FGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK 1483 (2602)
Q Consensus 1406 ~~~v~eal~~~l~~~--~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd 1483 (2602)
..+.++++.+.++.. +.+.+. ...++++++++++|.+ ++++++|||.|+.++++++. +++||
T Consensus 12 ~~~~~~~~~~~l~~g~~~~~~g~-----------~v~~fE~~~a~~~g~~--~~v~~~SGt~Al~lal~~l~---~~~gd 75 (384)
T d1b9ha_ 12 DDAERNGLVRALEQGQWWRMGGD-----------EVNSFEREFAAHHGAA--HALAVTNGTHALELALQVMG---VGPGT 75 (384)
T ss_dssp CHHHHHHHHHHHHTSCCBTTTCS-----------HHHHHHHHHHHHTTCS--EEEEESCHHHHHHHHHHHTT---CCTTC
T ss_pred CHHHHHHHHHHHHcCCeeecCCH-----------HHHHHHHHHHHHHCcC--eEEEeCCHHHHHHHHHHHcC---CCCCC
Confidence 456677888888752 223332 4778999999999976 68999999999999999985 58999
Q ss_pred EEEEcCCCCcchHHHHHHHHhCCcEEEEeccCC-CCCcChhHHHhhccCCceEEEEeccccccccccChHHHHHHhhhcC
Q psy15216 1484 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN-NGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKG 1562 (2602)
Q Consensus 1484 ~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~-~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~~ia~~~g 1562 (2602)
+|++|+.+|+++..++..+ |++++++++++ ++.+|++.+++.++++|++|+++|. .|...++++|.++|++|+
T Consensus 76 eVi~p~~t~~a~~~ai~~~---g~~p~~~d~~~~~~~~d~~~~~~~i~~~tk~i~~~~~---~g~~~d~~~i~~~~~~~~ 149 (384)
T d1b9ha_ 76 EVIVPAFTFISSSQAAQRL---GAVTVPVDVDAATYNLDPEAVAAAVTPRTKVIMPVHM---AGLMADMDALAKISADTG 149 (384)
T ss_dssp EEEEESSSCTHHHHHHHHT---TCEEEEECBCTTTCCBCHHHHHHHCCTTEEEECCBCG---GGCCCCHHHHHHHHHHHT
T ss_pred EEEEecccccccccccccc---ccccccccccccccccchhhhcccccccccccccccc---cccccccccchhhhhhhh
Confidence 9999999999998887776 99999999886 6779999999999999999988777 889999999999999999
Q ss_pred CEEEEecccccCcccccCCCCC--ccEEEE--ccccccCCCceEEEEEecCC-CCccccccccC-Cc---cccC---CCC
Q psy15216 1563 VIFHCDAAQAVGKIDINIQNYK--VDLMSF--SAHKIYGPKGIGALYIRRNP-RTRIEAQIHGG-GH---EYGL---RSG 1630 (2602)
Q Consensus 1563 i~vivD~a~~~g~~~~~l~~~~--~D~~v~--S~~K~~gp~G~G~l~~~~~~-~~~l~~~~~g~-~~---~~~~---~~g 1630 (2602)
+++|.|+||+.|... +-...+ .|+.++ +.+|..+..+.|+++.+++- .+.++.....+ .. ...+ ..|
T Consensus 150 i~lieD~a~a~ga~~-~g~~~g~~g~~~~~Sf~~~K~i~~g~GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~G 228 (384)
T d1b9ha_ 150 VPLLQDAAHAHGARW-QGKRVGELDSIATFSFQNGKLMTAGEGGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHKIAG 228 (384)
T ss_dssp CCBCEECTTCTTCEE-TTEEGGGSSSCEEEECCTTSSSCSSSCEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCCSCC
T ss_pred hhhhhhhceeccccc-CCEecCcccccceecccccccccccccchhhhhhHHHHHHHHHHHhcCCCCccccccccccccc
Confidence 999999999998742 211111 244454 45675443334777777543 33333322211 11 0111 111
Q ss_pred -CcchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCC---CCCceEEEEEecCC---cHHH
Q psy15216 1631 -TLATHQIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNN---RIPHNLNISFNFIE---GESL 1702 (2602)
Q Consensus 1631 -t~~~~~~~al~~aL~~~-~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~---~~~~~~~~~~~~~~---~~~~ 1702 (2602)
..-+..+ .+|+... ...+++..++.+++.+++.+.|.+ ++++.....+.. .......+.++... .+.+
T Consensus 229 ~n~rms~l---~Aaig~~qL~~ld~~~~~R~~~~~~y~~~L~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rd~l 304 (384)
T d1b9ha_ 229 SNMRLNEF---SASVLRAQLARLDEQIAVRDERWTLLSRLLGA-IDGVVPQGGDVRADRNSHYMAMFRIPGLTEERRNAL 304 (384)
T ss_dssp CBCBCBHH---HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHT-STTCEECCCCTTCCBCCCSEEEEECTTCCHHHHHHH
T ss_pred cccccccc---hhhhhhhhhhhcccchhhhhhhhhhhhhhhhc-ccccccccccccccccccccccceecccccccHHHH
Confidence 1111222 2222211 134678888889999999999987 788765543221 22233344443322 3457
Q ss_pred HHhc--CCEEEccccccCCCCCChhHHH------------HHcCCCccccCCeEEEecCCCCC-HHHHHHHHHHHHHh
Q psy15216 1703 LMAI--KDIAVSSGSACTSASLEPSYVL------------RALGCNDELAHSSIRFTIGRFTT-EKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1703 ~~~L--~gI~v~~g~~~~~~~~~~~~~~------------~~~~~~~~~~~~~iRls~~~~~t-~edid~li~~L~~~ 1765 (2602)
...| +||.++. +|.+-+.++.+.. ..++.++......|+|+++.+.| ++|++++++.|++.
T Consensus 305 ~~~L~~~GI~~~~--~y~plh~~~~~~~~~~~~~~~~~~~~~~Pna~~l~~~~l~LP~~~~Lt~e~ei~~I~~~i~~~ 380 (384)
T d1b9ha_ 305 VDRLVEAGLPAFA--AFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPELHATAEIIADA 380 (384)
T ss_dssp HHHHHHTTCCEEE--CCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCeee--eCcchhcCHHHHhcCCCcccccccccCCHHHHHHHhCEEEccCCCCCCCHHHHHHHHHHHHHH
Confidence 7777 7887764 3333222232211 11222223334679999998877 57999999999974
|
| >d1xjsa_ d.224.1.2 (A:) NifU {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: SufE/NifU superfamily: SufE/NifU family: NifU/IscU domain domain: NifU species: Bacillus subtilis [TaxId: 1423]
Probab=99.69 E-value=3.9e-18 Score=181.61 Aligned_cols=89 Identities=35% Similarity=0.713 Sum_probs=80.9
Q ss_pred hhhhhhhhhhhhhhcCCCCcCcccCCCCcceeeeecCCCCccEEEEEEEEcCCCcEEeeeeeccccchhHhhHHHHHHHH
Q psy15216 1766 EFFMSYSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKTYGCGSAIASSSLVTEWV 1845 (2602)
Q Consensus 1766 ~~~~~y~~~i~dh~~~p~~~g~~~~~~~~~~~~~~~~~~cgd~~~~~~~~~~~~~i~~~~~~~~gc~~~~a~~s~~~~~~ 1845 (2602)
++..+|+++|+|||+||||.|.++++ . .++.+||.|||.|+||++|+ +++|+|++|++.||++++||||+++|++
T Consensus 6 ~~~~LY~e~Ildh~~nP~n~g~l~~~--~--~~~~~Np~CGD~i~i~l~i~-~~~I~d~~f~~~GCai~~ASasil~e~~ 80 (147)
T d1xjsa_ 6 NLDTLYRQVIMDHYKNPRNKGVLNDS--I--VVDMNNPTCGDRIRLTMKLD-GDIVEDAKFEGEGCSISMASASMMTQAI 80 (147)
T ss_dssp TTHHHHHHHHHHHHHSCCCCCCCCSS--E--EEEEEETTTTEEEEEEEECC-SSBCCEEEEEEESSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCCCCCCCCC--C--EeecCCCCCCcEEEEEEEEc-CCceEEEEeeecccHHHHHHHHHHHHHH
Confidence 35678999999999999999999743 2 46778999999999999996 6799999999999999999999999999
Q ss_pred cCCChhhhhccccc
Q psy15216 1846 KGKTLDEAMSIKNT 1859 (2602)
Q Consensus 1846 ~g~~~~~~~~i~~~ 1859 (2602)
+|||+++|..+.+.
T Consensus 81 ~gk~~~~a~~l~~~ 94 (147)
T d1xjsa_ 81 KGKDIETALSMSKI 94 (147)
T ss_dssp TTSBHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHH
Confidence 99999999998853
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.69 E-value=2.2e-17 Score=208.51 Aligned_cols=186 Identities=14% Similarity=0.050 Sum_probs=141.8
Q ss_pred HHHHHHHHHHHHhCCCC-CcEEEeCCHHHHHHHHHHhcccccccCCCEEE-Ec-CCCCcccHHHHHHHHhCCcEEEEecc
Q psy15216 42 AIEKARNEVAQLIYADP-REIIWTSGATESNNLAIKGAAHFYKKRGKHII-TV-QTEHKSVLDSIRKLENDGFRVTYLKP 118 (2602)
Q Consensus 42 ~~~~~r~~lA~~~g~~~-~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vl-v~-~~~~~s~~~~~~~~~~~G~~v~~v~~ 118 (2602)
..+++++..++.++.++ +++++++|+++|+..++.++. +|+.|+ ++ .+.|+++...++.+ |++++. .
T Consensus 51 ~~~~l~~~~~~~~~~~~~e~~~~~~~~~~a~~~~l~al~-----~~~~vi~~~~~~~~~~~~~~~~l~---g~~~v~--~ 120 (366)
T d2aeua1 51 FAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILALK-----PKKVIHYLPELPGHPSIERSCKIV---NAKYFE--S 120 (366)
T ss_dssp HHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHC-----CSEEEEECSSSSCCTHHHHHHHHT---TCEEEE--E
T ss_pred hHHHHHHHHHHHccCCCccEEEEeCCHHHHHHHHHHHhC-----CCCEEEEecCCCcchhHHHHHHhc---CCeEEC--C
Confidence 45678888888888754 579999999999999998876 566654 44 57899998887766 877543 3
Q ss_pred CCCCccChHHHHhhccCCceEEEEecccCccc-ccccHHHHHHHHHhcCCEEEEeccccccccccc----CCCCCccEEE
Q psy15216 119 KNNGLITLSQLEEKICSDTILVSVMLVNNEIG-VIQPILEIGELCRSKGVIFHCDAAQAVGKIDIN----IQNYKVDLMS 193 (2602)
Q Consensus 119 ~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG-~~~~l~~I~~la~~~g~~livD~a~a~g~~~~d----l~~~~~D~~~ 193 (2602)
+ |+++++++|+++|+++++++|+||++ .+.++++|+++|++||+++++|++|+.+..... ....++|+++
T Consensus 121 ~-----d~e~l~~~i~~~tk~i~~~~p~n~~~~~~~~l~~i~~ia~~~~~~~i~De~y~~~~~~~~~~~~~~~~~~di~~ 195 (366)
T d2aeua1 121 D-----KVGEILNKIDKDTLVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVV 195 (366)
T ss_dssp S-----CHHHHHTTCCTTEEEEEECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHHTCSEEE
T ss_pred C-----CHHHHHHhcCCCceEEEEEecCCCCcCCHHHHHHHHHHhccCcEEEEEecCccccccccccCCCHhhcCceEEE
Confidence 2 79999999999999999999988754 677899999999999999999999976543221 1235689999
Q ss_pred eccccccCCCCcEEEEEecCCCCcccceecCCCccccccccCcchhHHHHHHHHHH
Q psy15216 194 FSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFR 249 (2602)
Q Consensus 194 ~S~~K~~Gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~ 249 (2602)
+|+||.+|..++||+++++++++.++.... ....+++.+..+++..+|+
T Consensus 196 ~S~sK~~~g~~~G~i~~~~~~i~~~~~~~~-------~~g~~~~~~~~~a~~~aL~ 244 (366)
T d2aeua1 196 TSTDKLMEGPRGGLLAGKKELVDKIYIEGT-------KFGLEAQPPLLAGIYRALK 244 (366)
T ss_dssp EETTSSSSSCSCEEEEEEHHHHHHHHHHHH-------TTTCBCCHHHHHHHHHHHH
T ss_pred ecccccccccceeEEEecHHHHHHHHHHHh-------cccccCCHHHHHHHHHHHH
Confidence 999997765568999999998887765431 1122344445555556665
|
| >d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.69 E-value=8.7e-17 Score=194.17 Aligned_cols=355 Identities=17% Similarity=0.186 Sum_probs=246.8
Q ss_pred CcccHHHHHHHHHhcCCCccccceeeeeceeeeccCCCCCCCHHHHHHHHHHHhhcc--CCCCCccchhHHHHHHHHHHH
Q psy15216 1365 SPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDATTPIDPRVVDKMIPYLRVQF--GNPASRNHIYGWTAEKAIEKA 1442 (2602)
Q Consensus 1365 ~~~~~~~v~~aL~~~g~~~~~~ei~~iP~~~v~L~~~~~~~~~~v~eal~~~l~~~~--~np~~~~~~~~~~~~~~~~~l 1442 (2602)
||+-+.-+.+..+. ....+.++|.. .-.++.+.+++...+.+.+ ++|+...|.......++..-+
T Consensus 8 D~ei~~~i~~e~~r-----q~~~l~LiaSE--------N~~S~~v~~a~~S~l~nkyaeG~pg~ryy~G~~~id~iE~la 74 (405)
T d1kl1a_ 8 DPQVFAAIEQERKR-----QHAKIELIASE--------NFVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELA 74 (405)
T ss_dssp CHHHHHHHHHHHHH-----HHHSEECCTTC--------CCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH-----HHcCceEeccC--------CcCCHHHHHHhcCcccCcCcCCCCCccccCCchhHHHHHHHH
Confidence 45555555444332 23445566643 3556789999998887754 578775566555666666677
Q ss_pred HHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHHH--HhCCcEEEEeccCC-CCC
Q psy15216 1443 RNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL--ENDGFRVTYLKPKN-NGL 1519 (2602)
Q Consensus 1443 r~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~--~~~G~~v~~v~~~~-~~~ 1519 (2602)
.++.+++||+...+|-. .|++.|+..++.+++ +|||.|+..++.+.++....... .....++...++++ ++.
T Consensus 75 ~~ra~~lF~a~~anVqp-~SGs~An~av~~all----~pGD~im~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~~~~ 149 (405)
T d1kl1a_ 75 RERAKQLFGAEHANVQP-HSGAQANMAVYFTVL----EHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHV 149 (405)
T ss_dssp HHHHHHHHCCSEEECCC-SSHHHHHHHHHHHHC----CTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECBCTTTCS
T ss_pred HHHHHHHhCCCcceeec-cCchHHHHHHHHHhc----CCCCEEEEeecccccccccCccccccceEEEEEEeccchhccc
Confidence 78889999986444422 477889999999987 99999999998777754322111 11245677777875 567
Q ss_pred cChhHHHhhcc-CCceEEEEeccccccccccChHHHHHHhhhcCCEEEEecccccCc-----ccccCCCCCccEEEEccc
Q psy15216 1520 ITLSQLEEKIC-SDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGK-----IDINIQNYKVDLMSFSAH 1593 (2602)
Q Consensus 1520 id~d~l~~~i~-~~t~lv~l~~~~n~tG~~~~l~~I~~ia~~~gi~vivD~a~~~g~-----~~~~l~~~~~D~~v~S~~ 1593 (2602)
+|++++++.+. .++++|++-.-. .-..+|++++.++|++.|+++++|.+|..|. .+-++ + .+|++++|.|
T Consensus 150 ID~d~l~~~a~~~kPklIi~G~S~--y~r~~d~~~~reIad~vga~l~~D~aH~~GLIa~g~~~~P~-~-~aDvvt~tTh 225 (405)
T d1kl1a_ 150 IDYDDVREKARLHRPKLIVAAASA--YPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPV-P-YAHFVTTTTH 225 (405)
T ss_dssp BCHHHHHHHHHHHCCSEEEECCSS--CCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCST-T-TCSEEEEESS
T ss_pred ccHHHHHHHHHhhCcceEEecccc--cccccChHHHHHHHhhhCCEEecchhhHhhhhhhhhcCChh-h-hhhheecccc
Confidence 99999999986 577887775443 4456689999999999999999999997654 33344 2 4799999999
Q ss_pred c-ccCCCceEEEEEecCCCCccccccccCCccccCCCCCcchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15216 1594 K-IYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRL-ARIEMKEELKRILFLQKRLYNGLME 1671 (2602)
Q Consensus 1594 K-~~gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~-~~~~~~~~~~~~~~l~~~l~~~L~~ 1671 (2602)
| +.||+| |+++.+++..+++....+.+. .|.+..+.++|++.+|.. ....+..+.++...+++.|.+.|.+
T Consensus 226 KtlrGPrg-g~I~~~~~~~~~i~~avfPg~------qggp~~~~iAa~Aval~Ea~~~~fk~Ya~qvv~NAkaLa~~L~~ 298 (405)
T d1kl1a_ 226 KTLRGPRG-GMILCQEQFAKQIDKAIFPGI------QGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQN 298 (405)
T ss_dssp STTCCCSC-EEEEECHHHHHHHHHHHTTTT------CSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCC-ceEEecchhHHHHHhhhCccc------ccCcchhHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhc
Confidence 9 889997 899888776666665554332 367888999999999884 4566788999999999999999998
Q ss_pred cCCcEEEeCCCCCCCCceEEEEEec--CCcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecC
Q psy15216 1672 SIEEIYINGDMNNRIPHNLNISFNF--IEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIG 1747 (2602)
Q Consensus 1672 ~~~gl~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~ 1747 (2602)
.|+.+...- .-.++..+.+.. ..+......| .||.+..-..+..+ ......+.|||+..
T Consensus 299 --~G~~vv~gg--Td~H~vlvdl~~~~~~g~~ae~~Le~agI~~Nkn~iP~d~-------------~~~~~~SGiRiGT~ 361 (405)
T d1kl1a_ 299 --EGFTLVSGG--TDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDP-------------ESPFVTSGIRIGTA 361 (405)
T ss_dssp --TTCEEGGGS--CSSSEEEEECGGGTCCHHHHHHHHHHHTEECEECCCTTCS-------------SCTTTCSEEEEECH
T ss_pred --CCceeecCC--CccceeeccccccCCcHHHHHHHHHHcCeEEcCCcCCCCC-------------CCCCCCCceeecCH
Confidence 688887421 223454554432 3444443444 58876643322221 01122378999855
Q ss_pred C----CCCHHHHHHHHHHHHHh
Q psy15216 1748 R----FTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1748 ~----~~t~edid~li~~L~~~ 1765 (2602)
. ...++|+.++.+.|.+.
T Consensus 362 a~TtrG~~e~dm~~ia~~I~~~ 383 (405)
T d1kl1a_ 362 AVTTRGFGLEEMDEIAAIIGLV 383 (405)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHH
Confidence 3 35779999999888864
|
| >d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Prokaryotic actin homolog MreB species: Thermotoga maritima [TaxId: 2336]
Probab=99.69 E-value=7.7e-18 Score=193.60 Aligned_cols=178 Identities=13% Similarity=0.167 Sum_probs=130.0
Q ss_pred CCceEEEEEeCCceEEEEEEEEeCCEEEEEEEecCCCCchhHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHH-Hh
Q psy15216 2212 FEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKE-LL 2290 (2602)
Q Consensus 2212 ~~~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~l~~~~e~~K~-~l 2290 (2602)
.+..+||||+||||||+|+++..+ +...+....||.+++..+..++...+ ...................+. ..
T Consensus 5 ~~~gvlV~DiGGGT~Dvsi~~~g~-----~~~~~~~~~gg~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 78 (196)
T d1jcea2 5 EPSGNMVVDIGGGTTEVAVISLGS-----IVTWESIRIAGDEMDEAIVQYVRETY-RVAIGERTAERVKIEIGNVFPSKE 78 (196)
T ss_dssp SSSCEEEEEECSSCEEEEEEETTE-----EEEEEEESCSHHHHHHHHHHHHHHHH-CEECCHHHHHHHHHHHCBCSCCHH
T ss_pred CCCceEEEEcCCCcEEEEEEEcCC-----EeEEeeecCCCcccccchhhhhhhhh-cccccchhHHHHHHHHhhhhhhhh
Confidence 456789999999999999998654 22334478899999999999998763 333322222211111111000 00
Q ss_pred cccceEEEEEE-ecCCceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc---ccceEEEEeCccchHHHHHHHH
Q psy15216 2291 SYQSSVKLNVK-LSDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIK---DINNVILVGGSTRMKHIHEGVS 2366 (2602)
Q Consensus 2291 s~~~~~~~~i~-~~~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~~~~~~~---~i~~V~LvGG~s~~p~v~~~l~ 2366 (2602)
+......+... ..++......+++.++++++.++++++...+.++++.+..... .++.|+||||+|+||.|+++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~IvLvGGsS~ip~v~~~l~ 158 (196)
T d1jcea2 79 NDELETTVSGIDLSTGLPRKLTLKGGEVREALRSVVVAIVESVRTTLEKTPPELVSDIIERGIFLTGGGSLLRGLDTLLQ 158 (196)
T ss_dssp HHHCEEEEEEEETTTTEEEEEEEEHHHHHHHTHHHHHHHHHHHHHHHHTSCHHHHHHHHHHCEEEESGGGCSBTHHHHHH
T ss_pred ccccceeeeeeeccCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccceEEeCchhcchhHHHHHH
Confidence 11122223333 4556667888999999999999999999999999998765532 2567999999999999999999
Q ss_pred hhcCCcccCCCCccchhhhHHHHHhHHhc
Q psy15216 2367 NFFKTTLLTSIDPDKAVVFGAAIQANFLS 2395 (2602)
Q Consensus 2367 ~~f~~~~~~~~~p~~aVa~GAa~~a~~~~ 2395 (2602)
+.||.++....||++|||+|||+++..+.
T Consensus 159 ~~fg~~v~~~~~P~~aVA~GAai~~~~~~ 187 (196)
T d1jcea2 159 KETGISVIRSEEPLTAVAKGAGMVLDKVN 187 (196)
T ss_dssp HHHSSCEEECSSTTTHHHHHHHHGGGCHH
T ss_pred HHHCcCCccCCChHHHHHHHHHHHHHCHH
Confidence 99999999999999999999999875443
|
| >d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Spore coat polysaccharide biosynthesis protein C species: Helicobacter pylori [TaxId: 210]
Probab=99.69 E-value=8.2e-16 Score=194.89 Aligned_cols=332 Identities=12% Similarity=0.061 Sum_probs=227.2
Q ss_pred CCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCC--
Q psy15216 9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRG-- 86 (2602)
Q Consensus 9 ~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~g-- 86 (2602)
...+-++++.+.+.+.+ +..| +..+++++++++++|.+ ++++++|+|.|+.+++.++. ..+|
T Consensus 10 ~~~~~~~~v~~~l~~~~-------~~~G----~~v~~fE~~~~~~~g~k--~ai~~~Sgt~Al~~al~al~---~~~~~~ 73 (371)
T d2fnua1 10 LDKEDKKAVLEVLNSKQ-------LTQG----KRSLLFEEALCEFLGVK--HALVFNSATSALLTLYRNFS---EFSADR 73 (371)
T ss_dssp CCHHHHHHHHHHHTSSC-------CSSS----HHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHSS---CCCTTS
T ss_pred CCHHHHHHHHHHHcCCC-------ccCC----HHHHHHHHHHHHHHCcC--eEEEEecHHHHHHHHHHHhc---ccCCCC
Confidence 45777888989886522 1222 35788999999999986 78999999999999999987 3444
Q ss_pred CEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHhcC
Q psy15216 87 KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKG 166 (2602)
Q Consensus 87 d~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~~g 166 (2602)
++|++|+.+|+++..++... |+++++++++++..++.+++++.++++|++|+++|. .|...++++|.++|+++|
T Consensus 74 ~eVi~p~~t~~a~~~ai~~~---G~~pv~vDi~~~~~~~~~~~~~~~~~~t~avi~vh~---~G~~~~~~~i~~~~~~~~ 147 (371)
T d2fnua1 74 NEIITTPISFVATANMLLES---GYTPVFAGIKNDGNIDELALEKLINERTKAIVSVDY---AGKSVEVESVQKLCKKHS 147 (371)
T ss_dssp CEEEECSSSCTHHHHHHHHT---TCEEEECCBCTTSSBCGGGSGGGCCTTEEEEEEECG---GGCCCCHHHHHHHHHHHT
T ss_pred Ceeecccccccccceeeecc---Ccccccccccccccccchhhhhhccchhhccccccc---cccccccccccccccccc
Confidence 58999999999998888777 999999999998888899999999999999999886 899999999999999999
Q ss_pred CEEEEecccccccccccCCCC--CccEEEecc--ccccCCCCcEEEEEec-CCCCcccceecCCCcc---ccc---ccc-
Q psy15216 167 VIFHCDAAQAVGKIDINIQNY--KVDLMSFSA--HKIYGPKGIGALYIRR-NPRTRIEAQIHGGGHE---YGL---RSG- 234 (2602)
Q Consensus 167 ~~livD~a~a~g~~~~dl~~~--~~D~~~~S~--~K~~Gp~G~G~l~~~~-~~~~~l~~~~~g~~~~---~~~---~~g- 234 (2602)
+++|.|+||+.|...- -... .-|+.++|| .|..+..+.|+++.++ ++.+.++.....+... ... ..|
T Consensus 148 i~lIEDaaqa~Ga~~~-~~~~G~~g~~~~~Sf~~~K~l~~g~GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~G~ 226 (371)
T d2fnua1 148 LSFLSDSSHALGSEYQ-NKKVGGFALASVFSFHAIKPITTAEGGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVKSIGH 226 (371)
T ss_dssp CEEEEECTTCTTCEET-TEETTSSSSEEEEECCTTSSSCCSSCEEEEESCHHHHHHHHHHTBTTEEESSSSCEEESSCCC
T ss_pred hhhccchhhccCceec-cccCCccccccccccccccccccccceEEEeechhhhhhcccccccccccccccccccccccc
Confidence 9999999999987532 1111 125555555 6844433347777664 4444444332222110 000 011
Q ss_pred CcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCC--CCCCceEEEEEccc---ChhHHHHH
Q psy15216 235 TLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMN--NRIPHNLNISFNFI---EGESLLMA 309 (2602)
Q Consensus 235 t~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~--~~~~~~~~~~~~~~---~~~~~~~~ 309 (2602)
......+.|+ .++.. ...+++..++.++++.++.+.|.+ .+++.+..+.. ...++.+.+.+... ..+.+.+.
T Consensus 227 n~r~sel~Aa-igl~q-L~~l~~~~~~R~~~~~~y~~~l~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~r~~~~~~ 303 (371)
T d2fnua1 227 NFRLNEIQSA-LGLSQ-LKKAPFLMQKREEAALTYDRIFKD-NPYFTPLHPLLKDKSSNHLYPILMHQKFFTCKKLILES 303 (371)
T ss_dssp BCCCCHHHHH-HHHHH-HTTHHHHHHHHHHHHHHHHHHHTT-CSSEEESGGGCSSCCCCSCEEEEECGGGGGGHHHHHHH
T ss_pred cccccchhhh-hhhhh-hhhccchhhhhhhhhhhhcccccc-cccccccccccccccccccccccccccchhHHHHHHHH
Confidence 1111122111 22222 245788888889999999999987 78888764322 22333444444432 24567777
Q ss_pred h--CCeEEcccccCCCCCCChHHHHHH----cCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 310 I--KDIAVSSGSACTSASLEPSYVLRA----LGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 310 L--~gI~v~~g~~~~~~~~~~~~~~~~----~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
| +||.++.. +.|-+.++.+.... +...+....+.+.+++++..|.+|++++++.|++
T Consensus 304 L~~~gI~~~~~--y~pl~~~~~~~~~~~~~~~pnae~~~~~~l~LP~~~~lt~~di~~I~~~i~~ 366 (371)
T d2fnua1 304 LHKRGILAQVH--YKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHSVLK 366 (371)
T ss_dssp HHHTTEECBCC--CCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred HHHCCCCccee--CcccccCHHHHhccccCCCHHHHHHHhCeEECcCCCCCCHHHHHHHHHHHHH
Confidence 7 79887644 43433444332211 1111223346799999999999999999999986
|
| >d1xjsa_ d.224.1.2 (A:) NifU {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: SufE/NifU superfamily: SufE/NifU family: NifU/IscU domain domain: NifU species: Bacillus subtilis [TaxId: 1423]
Probab=99.69 E-value=5.2e-18 Score=180.66 Aligned_cols=88 Identities=35% Similarity=0.723 Sum_probs=80.2
Q ss_pred hhhhhhhHhhhhcccCCCCCCCCCCCCCcceeeeeCCCCcccEEEEEEEEcCCCceEeeeeeccccchhHhhHHHHHHHH
Q psy15216 370 EFFMSYSEKVLDHYENPRNVGVFEKNDNTVGTGMVGAPACGDVMKLQIKVNKNGVITDAKFKTYGCGSAIASSSLVTEWV 449 (2602)
Q Consensus 370 ~~~~~y~~~~~~hy~~p~n~g~~~~~~~~~~~~~~~~~~cgd~~~~~~~~~~~~~i~~~~~~~~gc~~~~a~~s~~~~~~ 449 (2602)
++..+|+++++|||+||+|+|.+++. . .++.+||.|||.|+|+++|+ +++|+|++|+++||++++||||++++++
T Consensus 6 ~~~~LY~e~Ildh~~nP~n~g~l~~~--~--~~~~~Np~CGD~i~i~l~i~-~~~I~d~~f~~~GCai~~ASasil~e~~ 80 (147)
T d1xjsa_ 6 NLDTLYRQVIMDHYKNPRNKGVLNDS--I--VVDMNNPTCGDRIRLTMKLD-GDIVEDAKFEGEGCSISMASASMMTQAI 80 (147)
T ss_dssp TTHHHHHHHHHHHHHSCCCCCCCCSS--E--EEEEEETTTTEEEEEEEECC-SSBCCEEEEEEESSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCCCCCCCCC--C--EeecCCCCCCcEEEEEEEEc-CCceEEEEeeecccHHHHHHHHHHHHHH
Confidence 46789999999999999999999743 2 45668999999999999995 6799999999999999999999999999
Q ss_pred cCCChhhhhhccc
Q psy15216 450 KGKTLDEAMSIKN 462 (2602)
Q Consensus 450 ~g~~~~e~~~i~~ 462 (2602)
+|||++++..+.+
T Consensus 81 ~gk~~~~a~~l~~ 93 (147)
T d1xjsa_ 81 KGKDIETALSMSK 93 (147)
T ss_dssp TTSBHHHHHHHHH
T ss_pred cCCCHHHHHHHHH
Confidence 9999999999885
|
| >d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Pseudomonas putida [TaxId: 303]
Probab=99.69 E-value=3.8e-16 Score=192.57 Aligned_cols=308 Identities=14% Similarity=0.118 Sum_probs=207.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHHH-HhCCcE
Q psy15216 1430 IYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDGFR 1508 (2602)
Q Consensus 1430 ~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~-~~~G~~ 1508 (2602)
.|++........+++.++++.|.. ..++++++..|+..++.++. ++||+|++++..|.+....++.. .+.|++
T Consensus 52 ~Y~R~~nPT~~~LE~~la~LEg~~--~a~~~~SGmaAi~~~l~~l~----~~Gd~vl~~~~~Yg~t~~l~~~~~~~~Gi~ 125 (392)
T d1gc0a_ 52 FYSRISNPTLNLLEARMASLEGGE--AGLALASGMGAITSTLWTLL----RPGDEVLLGNTLYGCTFAFLHHGIGEFGVK 125 (392)
T ss_dssp -----CCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHC----CTTCEEEEESSCCSHHHHHHHHTGGGGTCE
T ss_pred eecCCCChHHHHHHHHHHHHhCCc--ceeehhhHHHHHHHHHHhhc----cCCCeeecccccchhhhhhhhhhhccCCcc
Confidence 344444456788999999999964 67788999999999999987 89999999999999988877655 667999
Q ss_pred EEEeccCCCCCcChhHHHhhccCCceEEEEeccccccccccChHHHHHHhhhcCCEEEEecccccCcccccCCCCCccEE
Q psy15216 1509 VTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLM 1588 (2602)
Q Consensus 1509 v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~ 1588 (2602)
+.+++.. |++.++++++++|++|++..|+||+..+.|+++|+++||++|+++++|.+.+.+...-++ ++|+|++
T Consensus 126 ~~~~d~~-----d~~~~~~ai~~~t~lv~~Esp~NP~l~v~Di~~i~~ia~~~g~~~vvDnT~atP~~~~Pl-~~GaDiv 199 (392)
T d1gc0a_ 126 LRHVDMA-----DLQALEAAMTPATRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYLQRPL-ELGADLV 199 (392)
T ss_dssp EEEECTT-----CHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHGGGTCEEEEECTTTHHHHCCGG-GGTCSEE
T ss_pred cccCCcc-----CHHHHHHhCCCCCeEEEecccccceeeecchHHHHHHHHhcCCEEEEecCccCccccChH-HhCCCEE
Confidence 9999753 789999999999999999999999999999999999999999999999998766542222 4689999
Q ss_pred EEccccccCCCc---eEEEEEecCCCCccccccccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15216 1589 SFSAHKIYGPKG---IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRL 1665 (2602)
Q Consensus 1589 v~S~~K~~gp~G---~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l 1665 (2602)
+.|.+|+++..| .|.++++++.+.+++... .+....+++++...+.+..+++- +..++++..+.+..+
T Consensus 200 ihS~TKyi~Ghsd~~~G~v~~~~~~~~~~r~~~-----~~~~~G~~~~p~da~ll~rgl~T----L~lRm~~~~~nA~~l 270 (392)
T d1gc0a_ 200 VHSATKYLSGHGDITAGIVVGSQALVDRIRLQG-----LKDMTGAVLSPHDAALLMRGIKT----LNLRMDRHCANAQVL 270 (392)
T ss_dssp EEETTTTTTCSSSCCCEEEEECHHHHHHHHHTH-----HHHHTCCCCCHHHHHHHHHHHTT----HHHHHHHHHHHHHHH
T ss_pred EEecceeecCCcccccccccchhHHHHHHHHHH-----HHHccCCcCChhhHHHHHhcccc----HHHHHHHHHHHHHHH
Confidence 999999765444 688888765544332110 01122345555555545455543 445566667777777
Q ss_pred HHHHhhcCCcEE-EeCC--CC---C--------CCCceEEEEEecC--CcHHHHHhcC--CEEEccccccCC--------
Q psy15216 1666 YNGLMESIEEIY-INGD--MN---N--------RIPHNLNISFNFI--EGESLLMAIK--DIAVSSGSACTS-------- 1719 (2602)
Q Consensus 1666 ~~~L~~~~~gl~-i~~~--~~---~--------~~~~~~~~~~~~~--~~~~~~~~L~--gI~v~~g~~~~~-------- 1719 (2602)
.+.|++ .|.+. +.-| ++ + ....+..|.+.+. ....|+..|+ .+..+-|....-
T Consensus 271 A~~L~~-hp~V~~V~yPgl~s~p~~~~~~~~~~~~gg~~sf~l~~~~~~~~~f~~~L~l~~~a~SlGg~eSLi~~pa~~t 349 (392)
T d1gc0a_ 271 AEFLAR-QPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGGIGAGRRFMNALQLFSRAVSLGDAESLAQHPASMT 349 (392)
T ss_dssp HHHHHT-CTTEEEEEEC----------------CCTTEEEEEETTHHHHHHHHHHHCSSSEECSCCSCSSCEEECGGGTT
T ss_pred HHHHHh-CCCccEEeeccccCCcccccccccccCCCcEEEEEEeCCHHHHHHHHHhCCcceEeeccCCcChhhcCccccc
Confidence 777776 56554 2211 11 0 1123334444321 1235666663 333333332210
Q ss_pred CCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHH
Q psy15216 1720 ASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK 1763 (2602)
Q Consensus 1720 ~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~ 1763 (2602)
....+.-....+|+++ +.||||+|..+.++-++.+-++|+
T Consensus 350 h~~~~~e~r~~~Gi~~----~liRlSVGlEd~eDLi~Dl~~AL~ 389 (392)
T d1gc0a_ 350 HSSYTPEERAHYGISE----GLVRLSVGLEDIDDLLADVQQALK 389 (392)
T ss_dssp TSSSCHHHHHHTTCCT----TEEEEECCSSCHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHcCCCc----CeEEEEeeeCCHHHHHHHHHHHHH
Confidence 0112333455677774 899999998665555555555554
|
| >d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Spore coat polysaccharide biosynthesis protein C species: Helicobacter pylori [TaxId: 210]
Probab=99.69 E-value=7.6e-16 Score=195.23 Aligned_cols=332 Identities=12% Similarity=0.068 Sum_probs=224.4
Q ss_pred CCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCC--
Q psy15216 1405 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRG-- 1482 (2602)
Q Consensus 1405 ~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~g-- 1482 (2602)
..++-++++.+.++..+ +..| ...+++++++++++|.+ ++++++|+|.|+.+++.++. ..+|
T Consensus 10 ~~~~~~~~v~~~l~~~~-------~~~G----~~v~~fE~~~~~~~g~k--~ai~~~Sgt~Al~~al~al~---~~~~~~ 73 (371)
T d2fnua1 10 LDKEDKKAVLEVLNSKQ-------LTQG----KRSLLFEEALCEFLGVK--HALVFNSATSALLTLYRNFS---EFSADR 73 (371)
T ss_dssp CCHHHHHHHHHHHTSSC-------CSSS----HHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHSS---CCCTTS
T ss_pred CCHHHHHHHHHHHcCCC-------ccCC----HHHHHHHHHHHHHHCcC--eEEEEecHHHHHHHHHHHhc---ccCCCC
Confidence 34667788888886522 2212 24778999999999976 78999999999999999986 3444
Q ss_pred CEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccCCceEEEEeccccccccccChHHHHHHhhhcC
Q psy15216 1483 KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKG 1562 (2602)
Q Consensus 1483 d~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~~ia~~~g 1562 (2602)
++|++|+.+|+++..++..+ |+++++++++++..++.++++++++++|++|+++|. .|...++++|.++|+++|
T Consensus 74 ~eVi~p~~t~~a~~~ai~~~---G~~pv~vDi~~~~~~~~~~~~~~~~~~t~avi~vh~---~G~~~~~~~i~~~~~~~~ 147 (371)
T d2fnua1 74 NEIITTPISFVATANMLLES---GYTPVFAGIKNDGNIDELALEKLINERTKAIVSVDY---AGKSVEVESVQKLCKKHS 147 (371)
T ss_dssp CEEEECSSSCTHHHHHHHHT---TCEEEECCBCTTSSBCGGGSGGGCCTTEEEEEEECG---GGCCCCHHHHHHHHHHHT
T ss_pred Ceeecccccccccceeeecc---Ccccccccccccccccchhhhhhccchhhccccccc---cccccccccccccccccc
Confidence 58999999999999888777 999999999998888889999999999999999987 899999999999999999
Q ss_pred CEEEEecccccCcccccCC-CCCccEEEEcc--ccccCCCceEEEEEecC-CCCccccccccCCcc---c---cCCCCC-
Q psy15216 1563 VIFHCDAAQAVGKIDINIQ-NYKVDLMSFSA--HKIYGPKGIGALYIRRN-PRTRIEAQIHGGGHE---Y---GLRSGT- 1631 (2602)
Q Consensus 1563 i~vivD~a~~~g~~~~~l~-~~~~D~~v~S~--~K~~gp~G~G~l~~~~~-~~~~l~~~~~g~~~~---~---~~~~gt- 1631 (2602)
+++|.|+||+.|...-+.. ...-|+.++|| .|..+..+.|+++.+++ +.+.++.....|... . ....|.
T Consensus 148 i~lIEDaaqa~Ga~~~~~~~G~~g~~~~~Sf~~~K~l~~g~GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~G~n 227 (371)
T d2fnua1 148 LSFLSDSSHALGSEYQNKKVGGFALASVFSFHAIKPITTAEGGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVKSIGHN 227 (371)
T ss_dssp CEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCCSSCEEEEESCHHHHHHHHHHTBTTEEESSSSCEEESSCCCB
T ss_pred hhhccchhhccCceeccccCCccccccccccccccccccccceEEEeechhhhhhccccccccccccccccccccccccc
Confidence 9999999999987532211 11235556665 57444334588877653 333333322211110 0 001121
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCC--CCCCceEEEEEecC---CcHHHHHhc
Q psy15216 1632 LATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMN--NRIPHNLNISFNFI---EGESLLMAI 1706 (2602)
Q Consensus 1632 ~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~--~~~~~~~~~~~~~~---~~~~~~~~L 1706 (2602)
.-+..+.|. .++..+ ..++...++.+++..++.+.|.+ .+++.+..+.. ...+....+.+... ..+.+...|
T Consensus 228 ~r~sel~Aa-igl~qL-~~l~~~~~~R~~~~~~y~~~l~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~r~~~~~~L 304 (371)
T d2fnua1 228 FRLNEIQSA-LGLSQL-KKAPFLMQKREEAALTYDRIFKD-NPYFTPLHPLLKDKSSNHLYPILMHQKFFTCKKLILESL 304 (371)
T ss_dssp CCCCHHHHH-HHHHHH-TTHHHHHHHHHHHHHHHHHHHTT-CSSEEESGGGCSSCCCCSCEEEEECGGGGGGHHHHHHHH
T ss_pred ccccchhhh-hhhhhh-hhccchhhhhhhhhhhhcccccc-cccccccccccccccccccccccccccchhHHHHHHHHH
Confidence 112222221 222222 34677788888899999999987 78888764332 22333333444321 235566666
Q ss_pred --CCEEEccccccCCCCCChhHHHHHcC-----CCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1707 --KDIAVSSGSACTSASLEPSYVLRALG-----CNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1707 --~gI~v~~g~~~~~~~~~~~~~~~~~~-----~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
+||.++.. +.+.+.++.+. .... ..+......+.|++++..|.+|++++++.|++
T Consensus 305 ~~~gI~~~~~--y~pl~~~~~~~-~~~~~~~~pnae~~~~~~l~LP~~~~lt~~di~~I~~~i~~ 366 (371)
T d2fnua1 305 HKRGILAQVH--YKPIYQYQLYQ-QLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHSVLK 366 (371)
T ss_dssp HHTTEECBCC--CCCGGGSHHHH-HHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred HHCCCCccee--CcccccCHHHH-hccccCCCHHHHHHHhCeEECcCCCCCCHHHHHHHHHHHHH
Confidence 89987643 33322233222 1111 12223346899999999999999999999987
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.68 E-value=7.6e-17 Score=203.56 Aligned_cols=186 Identities=14% Similarity=0.052 Sum_probs=139.9
Q ss_pred HHHHHHHHHHHHhCCC-CCcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEE-c-CCCCcchHHHHHHHHhCCcEEEEecc
Q psy15216 1438 AIEKARNEVAQLIYAD-PREIIWTSGATESNNLAIKGAAHFYKKRGKHIIT-V-QTEHKSVLDSIRKLENDGFRVTYLKP 1514 (2602)
Q Consensus 1438 ~~~~lr~~ia~~~g~~-~~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv-~-~~~~~s~~~~~~~~~~~G~~v~~v~~ 1514 (2602)
..+++++..++.++.+ .+++++++|+++|+..++.++. +|++|++ + .+.|+++...++.+ |++++ +.
T Consensus 51 ~~~~l~~~~~~~~~~~~~e~~~~~~~~~~a~~~~l~al~-----~~~~vi~~~~~~~~~~~~~~~~l~---g~~~v--~~ 120 (366)
T d2aeua1 51 FAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILALK-----PKKVIHYLPELPGHPSIERSCKIV---NAKYF--ES 120 (366)
T ss_dssp HHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHC-----CSEEEEECSSSSCCTHHHHHHHHT---TCEEE--EE
T ss_pred hHHHHHHHHHHHccCCCccEEEEeCCHHHHHHHHHHHhC-----CCCEEEEecCCCcchhHHHHHHhc---CCeEE--CC
Confidence 3567888888888764 4578999999999999998865 6666554 3 57899988877665 87754 33
Q ss_pred CCCCCcChhHHHhhccCCceEEEEeccccccc-cccChHHHHHHhhhcCCEEEEecccccCcccccC----CCCCccEEE
Q psy15216 1515 KNNGLITLSQLEEKICSDTILVSVMLVNNEIG-VIQPILEIGELCRSKGVIFHCDAAQAVGKIDINI----QNYKVDLMS 1589 (2602)
Q Consensus 1515 ~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG-~~~~l~~I~~ia~~~gi~vivD~a~~~g~~~~~l----~~~~~D~~v 1589 (2602)
+ |+++++++|+++|++|++++|+||++ ...++++|+++|++||+++++|++|+.+...... .++++|+++
T Consensus 121 ~-----d~e~l~~~i~~~tk~i~~~~p~n~~~~~~~~l~~i~~ia~~~~~~~i~De~y~~~~~~~~~~~~~~~~~~di~~ 195 (366)
T d2aeua1 121 D-----KVGEILNKIDKDTLVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVV 195 (366)
T ss_dssp S-----CHHHHHTTCCTTEEEEEECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHHTCSEEE
T ss_pred C-----CHHHHHHhcCCCceEEEEEecCCCCcCCHHHHHHHHHHhccCcEEEEEecCccccccccccCCCHhhcCceEEE
Confidence 2 79999999999999999999988754 5678999999999999999999999765432211 234689999
Q ss_pred EccccccCCCceEEEEEecCCCCccccccccCCccccCCCCCcchhHHHHHHHHHH
Q psy15216 1590 FSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFR 1645 (2602)
Q Consensus 1590 ~S~~K~~gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~ 1645 (2602)
+|+||.++..++||++.++++++.++.... ....+.+.+.++++..+|+
T Consensus 196 ~S~sK~~~g~~~G~i~~~~~~i~~~~~~~~-------~~g~~~~~~~~~a~~~aL~ 244 (366)
T d2aeua1 196 TSTDKLMEGPRGGLLAGKKELVDKIYIEGT-------KFGLEAQPPLLAGIYRALK 244 (366)
T ss_dssp EETTSSSSSCSCEEEEEEHHHHHHHHHHHH-------TTTCBCCHHHHHHHHHHHH
T ss_pred ecccccccccceeEEEecHHHHHHHHHHHh-------cccccCCHHHHHHHHHHHH
Confidence 999996654457999999988877765431 1122344455555556665
|
| >d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Phenylserine aldolase PSALD species: Pseudomonas putida [TaxId: 303]
Probab=99.68 E-value=4.2e-16 Score=195.62 Aligned_cols=313 Identities=13% Similarity=0.134 Sum_probs=205.4
Q ss_pred CCCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccC
Q psy15216 6 TTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKR 85 (2602)
Q Consensus 6 ~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~ 85 (2602)
+++++|.|++|+.++... +..++...+..+++|+++|+++|.+ .+++||+|+|+|++.++.++. .+
T Consensus 12 ~~g~~P~v~~A~~~a~~~---------~~~~~~~~~~~~~l~~~la~~~g~~-~~v~f~~sGt~An~~a~~~~~----~~ 77 (345)
T d1v72a1 12 IAGASPEVAQALVKHSSG---------QAGPYGTDELTAQVKRKFCEIFERD-VEVFLVPTGTAANALCLSAMT----PP 77 (345)
T ss_dssp GCCCCHHHHHHHHHTTSS---------CCCSTTCSHHHHHHHHHHHHHHTSC-CEEEEESCHHHHHHHHHHTSC----CT
T ss_pred CCCCCHHHHHHHHHHhcc---------CccccCCCHHHHHHHHHHHHHHCCC-cEEEECCchHHHHHHHHHHHH----hc
Confidence 346789999999875321 1122334467899999999999975 579999999999999999887 78
Q ss_pred CCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccCCc------e-EEEEecccCccccccc---H
Q psy15216 86 GKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDT------I-LVSVMLVNNEIGVIQP---I 155 (2602)
Q Consensus 86 gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~~t------k-lv~i~~~~npTG~~~~---l 155 (2602)
++.+++....|.+....+......+..+..++...++..+++.+++.+...+ . .++...+.|+.|...+ +
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (345)
T d1v72a1 78 WGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGPAAKLDIVRLRERTREKVGDVHTTQPACVSITQATEVGSIYTLDEI 157 (345)
T ss_dssp TEEEEECTTSHHHHSSTTHHHHHTTSCEEEECCCGGGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCTTSCCCCHHHH
T ss_pred CCccccccccceeeechhhHHHhcCcccccccccccccccHHHhhhhhcccccccccccceeeeeeccccccccccchhh
Confidence 8999999989888777766666668888888777788899999999997542 2 4445555566666544 6
Q ss_pred HHHHHHHHhcCCEEEEecccccccccccCC-----CC--CccEEEeccccccCCCCcEEEEEecCCCCcccceecCCCcc
Q psy15216 156 LEIGELCRSKGVIFHCDAAQAVGKIDINIQ-----NY--KVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHE 228 (2602)
Q Consensus 156 ~~I~~la~~~g~~livD~a~a~g~~~~dl~-----~~--~~D~~~~S~~K~~Gp~G~G~l~~~~~~~~~l~~~~~g~~~~ 228 (2602)
+++.++|++||+++++|++|..+....+.. .. ..+.+..+.+|.+++. .+.............. ..
T Consensus 158 ~~i~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~------~~ 230 (345)
T d1v72a1 158 EAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKNGVLA-AEAIVLFNTSLATEMS------YR 230 (345)
T ss_dssp HHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGGTCSS-CEEEEESSGGGHHHHH------HH
T ss_pred hhHHHHHHhcCceeeecccccceeccccccCHHHhhccccccccccCcccccccc-ccccccchhhhhhhcc------cc
Confidence 677888999999999999987543322211 11 2344555555533333 3333333211111100 00
Q ss_pred ccccccCcchhHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcccChhHHH
Q psy15216 229 YGLRSGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLL 307 (2602)
Q Consensus 229 ~~~~~gt~~~~~~~al~~al~-~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (2602)
.....++.+....++. +++. .......+...+...+..++.+.+.+ .+++.+..+... +++.+.++ .+..
T Consensus 231 ~~~~~~~~~~~~~aa~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~g~~~~~p~~~---niv~~~~~----~~~~ 301 (345)
T d1v72a1 231 RKRAGHLSSKMRFLSA-QIDAYLTDDLWLRNARKANAAAQRLAQGLEG-LGGVEVLGGTEA---NILFCRLD----SAMI 301 (345)
T ss_dssp HHHTTCCCSSTHHHHH-HHHHHTSTTHHHHHHHHHHHHHHHHHHHHTT-CTTEEEESCCCS---SEEEEEEC----HHHH
T ss_pred ccccccccchhhHHhh-hhHHHHHHhhhhhhccchhhHHHHHHHHHHh-cCCcEeccCCCc---cEEEEEcC----HHHH
Confidence 1112223333333332 3333 22233566777777888888888877 799998866432 34444443 2344
Q ss_pred HHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 308 MAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 308 ~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
+.| +||.+..+. ..++.|||+++.++|+||||+++++|++.
T Consensus 302 ~~L~~~gi~v~~~~---------------------~~~~~lR~~~~~~~T~edid~~le~lr~a 344 (345)
T d1v72a1 302 DALLKAGFGFYHDR---------------------WGPNVVRFVTSFATTAEDVDHLLNQVRLA 344 (345)
T ss_dssp HHHHHTTCBCBCSS---------------------SSTTEEEEECCTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCccccC---------------------CCCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 444 677664221 12378999999999999999999999964
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Probab=99.67 E-value=3.1e-16 Score=201.14 Aligned_cols=343 Identities=11% Similarity=0.043 Sum_probs=212.3
Q ss_pred cccHHHHHHHHHhcC-CCccccceeeeeceeeeccCCCCCCCHHHHHHHHHHHhhcc--CCCCCccchhHHHHHHHHHHH
Q psy15216 1366 PSKFIEIKNSLEMTG-FKAESSGIVMRPYTNIVFKDATTPIDPRVVDKMIPYLRVQF--GNPASRNHIYGWTAEKAIEKA 1442 (2602)
Q Consensus 1366 ~~~~~~v~~aL~~~g-~~~~~~ei~~iP~~~v~L~~~~~~~~~~v~eal~~~l~~~~--~np~~~~~~~~~~~~~~~~~l 1442 (2602)
|+-...+.+.+++.. -...+..++.-++. +...+..+.+.++......... +|+. .....++
T Consensus 12 ~d~i~~~~~~~~~d~~~~~InL~iG~~~d~-----~~~~~~~~~V~~a~~~~~~~~~~~~Y~~----------~~G~~~l 76 (401)
T d7aata_ 12 PDPILGVTEAFKRDTNSKKMNLGVGAYRDD-----NGKPYVLNCVRKAEAMIAAKKMDKEYLP----------IAGLADF 76 (401)
T ss_dssp CCHHHHHHHHHHHCCCTTCEECCCCSCCCT-----TSCCCCCHHHHHHHHHHHHTTCCCCCCC----------TTCCHHH
T ss_pred CChHHHHHHHHhCCCCCCcEEccCCCCcCC-----CCCCCCCHHHHHHHHHHhhCCCCCCCCC----------CCCCHHH
Confidence 333445555555432 22344555521111 2233556778888777765421 1211 1235778
Q ss_pred HHHHHHHhCC------CCCcEEEeCC--HH---HHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEE
Q psy15216 1443 RNEVAQLIYA------DPREIIWTSG--AT---ESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTY 1511 (2602)
Q Consensus 1443 r~~ia~~~g~------~~~~iv~t~g--aT---~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~ 1511 (2602)
|+++++++.- +++.++.+.+ ++ .++..+++++. +|||+|++++|.|+.+...+..+ |++++.
T Consensus 77 r~aia~~~~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~l~----~pGd~Vlv~~P~y~~y~~~~~~~---g~~~~~ 149 (401)
T d7aata_ 77 TRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFF----KFSRDVYLPKPSWGNHTPIFRDA---GLQLQA 149 (401)
T ss_dssp HHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHC----TTCCEEEEEESCCTTHHHHHHHT---TCEEEE
T ss_pred HHHHHHHHhccCCcccCcCceEEeccchHHHHHHHHHHhhHhhc----CCCceEEEecCCCcchhhHHHHc---CCeEEE
Confidence 8888887622 4456655543 22 34455555555 89999999999999998887766 999999
Q ss_pred eccCC--CCCcChhHHHhhc---cCCceEEEEeccccccccccC---hHHHHHHhhhcCCEEEEecccccCccc---c--
Q psy15216 1512 LKPKN--NGLITLSQLEEKI---CSDTILVSVMLVNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQAVGKID---I-- 1578 (2602)
Q Consensus 1512 v~~~~--~~~id~d~l~~~i---~~~t~lv~l~~~~n~tG~~~~---l~~I~~ia~~~gi~vivD~a~~~g~~~---~-- 1578 (2602)
++..+ ++.++.+.+.+.+ +++++++++++||||||.+++ +++|+++|++|++++|.|++|..-... .
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~~p~NPTG~~~s~e~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~ 229 (401)
T d7aata_ 150 YRYYDPKTCSLDFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDA 229 (401)
T ss_dssp EECEETTTTEECHHHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHT
T ss_pred EeccccccccccHHHHHHHHhcCCCceEEEEecCCCCCccccCCHHHHHHHHHHHhcceEEEEEeccchhhhcCCcccch
Confidence 99743 4567888888777 468899999999999999999 778999999999999999998532210 0
Q ss_pred ----cCCCC-CccEEEEccccccCCCc--eEEEEEecCCCCccccccccCCccccCCCCCcchhHHHHHHHHHH------
Q psy15216 1579 ----NIQNY-KVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFR------ 1645 (2602)
Q Consensus 1579 ----~l~~~-~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~------ 1645 (2602)
..... ..-+++.|++|.++++| +||++++.+..+.+................+++.....++...+.
T Consensus 230 ~~~~~~~~~~~~~~~~~s~sk~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~ 309 (401)
T d7aata_ 230 WALRHFIEQGIDVVLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRK 309 (401)
T ss_dssp HHHHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHH
T ss_pred hhhhhhhhhhcccceeEeccccceeeccccceeecchHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHhcCCHHHHH
Confidence 01111 22366779999887777 899999987665443221000000000112333344443434443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCc--EEEeCCCCCCCCceEEEEEecCCcHHHHHhc---CCEEEccccccCCC
Q psy15216 1646 LARIEMKEELKRILFLQKRLYNGLMESIEE--IYINGDMNNRIPHNLNISFNFIEGESLLMAI---KDIAVSSGSACTSA 1720 (2602)
Q Consensus 1646 ~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g--l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~L---~gI~v~~g~~~~~~ 1720 (2602)
......+..++++..+++.+.+.|.+..+. +....+ ...+|.+.+.+. +++.+| +||.+.+|
T Consensus 310 ~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~------~~G~F~~~~ls~-e~~~~L~~e~gV~~~pg------ 376 (401)
T d7aata_ 310 EWLVEVKGMADRIISMRTQLVSNLKKEGSSHNWQHITD------QIGMFCFTGLKP-EQVERLTKEFSIYMTKD------ 376 (401)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHH------CCSSEEECCCCH-HHHHHHHHHHCEECCTT------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceECC------CCeEEEecCCCH-HHHHHHHHhCCEEECCC------
Confidence 122346677788888999999999873221 111111 122344444443 444544 57876533
Q ss_pred CCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1721 SLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1721 ~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
+|||+... ++++|++++++|+++
T Consensus 377 ---------------------~Ris~a~~-~~~~i~~la~ai~~v 399 (401)
T d7aata_ 377 ---------------------GRISVAGV-ASSNVGYLAHAIHQV 399 (401)
T ss_dssp ---------------------CEEEGGGC-CTTTHHHHHHHHHHH
T ss_pred ---------------------cEEEeccC-CHHHHHHHHHHHHHH
Confidence 49998653 557899999999874
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Probab=99.67 E-value=2.7e-16 Score=201.76 Aligned_cols=317 Identities=10% Similarity=0.031 Sum_probs=199.9
Q ss_pred CCCCCCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCC------CCCcEEEeCCHH-----HHH
Q psy15216 3 YSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA------DPREIIWTSGAT-----ESN 71 (2602)
Q Consensus 3 ~a~~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~------~~~~Iv~t~g~T-----~al 71 (2602)
..+.+|.++.|.++..+...... + + +|.+.....++|+++++++.. +++.|+.+.++. .++
T Consensus 41 ~~~~~~~~~~V~~a~~~~~~~~~-~-~------~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~~~~~~~~~g~~~~~ 112 (401)
T d7aata_ 41 DNGKPYVLNCVRKAEAMIAAKKM-D-K------EYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVG 112 (401)
T ss_dssp TTSCCCCCHHHHHHHHHHHHTTC-C-C------CCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHhhCCC-C-C------CCCCCCCCHHHHHHHHHHHhccCCcccCcCceEEeccchHHHHHHHH
Confidence 34455777888888777665421 0 1 111223456677777776521 445565544322 356
Q ss_pred HHHHHhcccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccC--CCCccChHHHHhhc---cCCceEEEEeccc
Q psy15216 72 NLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK--NNGLITLSQLEEKI---CSDTILVSVMLVN 146 (2602)
Q Consensus 72 ~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~--~~~~ld~e~l~~~i---~~~tklv~i~~~~ 146 (2602)
..++.++. +|||+|++++|.|+.+...+..+ |++++.+++. .++.++.+.+.+.+ +++++++++++||
T Consensus 113 ~~~~~~l~----~pGd~Vlv~~P~y~~y~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~~p~ 185 (401)
T d7aata_ 113 ANFLQRFF----KFSRDVYLPKPSWGNHTPIFRDA---GLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHACAH 185 (401)
T ss_dssp HHHHHHHC----TTCCEEEEEESCCTTHHHHHHHT---TCEEEEEECEETTTTEECHHHHHHHHTTSCTTCEEEEESSSC
T ss_pred HHhhHhhc----CCCceEEEecCCCcchhhHHHHc---CCeEEEEeccccccccccHHHHHHHHhcCCCceEEEEecCCC
Confidence 66666666 89999999999999998887766 9999999874 35668888887776 4678999999999
Q ss_pred Cccccccc---HHHHHHHHHhcCCEEEEeccccccccc---------ccCC-CCCccEEEeccccccCCCC--cEEEEEe
Q psy15216 147 NEIGVIQP---ILEIGELCRSKGVIFHCDAAQAVGKID---------INIQ-NYKVDLMSFSAHKIYGPKG--IGALYIR 211 (2602)
Q Consensus 147 npTG~~~~---l~~I~~la~~~g~~livD~a~a~g~~~---------~dl~-~~~~D~~~~S~~K~~Gp~G--~G~l~~~ 211 (2602)
||||.+++ +++|+++|++|++++|.|++|..-... .... ....-+++.|++|.++++| +||++++
T Consensus 186 NPTG~~~s~e~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~RiG~~~~~ 265 (401)
T d7aata_ 186 NPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMGLYGERAGAFTVI 265 (401)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEEE
T ss_pred CCccccCCHHHHHHHHHHHhcceEEEEEeccchhhhcCCcccchhhhhhhhhhhcccceeEeccccceeeccccceeecc
Confidence 99999998 567888999999999999998642210 0011 1122367779999888777 8999999
Q ss_pred cCCCCcccceecCCCccccccccCcchhHHHHHHHHHH---H---HHHhHHHHHHHHHHHHHHHHHHHhhccCc--eEEe
Q psy15216 212 RNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFR---L---ARIEMKEELKRILFLQKRLYNGLMESIEE--IYIN 283 (2602)
Q Consensus 212 ~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~---~---~~~~~~~~~~~~~~l~~~l~~~L~~~~~g--~~l~ 283 (2602)
....+.+.................++......+...+. + .....+..++++.++++.+.+.|.+..+. +...
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~ 345 (401)
T d7aata_ 266 CRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSSHNWQHI 345 (401)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHH
T ss_pred hHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceE
Confidence 87766543321000000000112333333333334443 1 12345677778888888888888773221 1111
Q ss_pred CCCCCCCCceEEEEEcccChhHHHHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHH
Q psy15216 284 GDMNNRIPHNLNISFNFIEGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEID 360 (2602)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid 360 (2602)
.+. .+.+++ .+.+ .+++++| +||.+.+| +|||++. .++++|+
T Consensus 346 ~~~-----~G~F~~-~~ls-~e~~~~L~~e~gV~~~pg---------------------------~Ris~a~-~~~~~i~ 390 (401)
T d7aata_ 346 TDQ-----IGMFCF-TGLK-PEQVERLTKEFSIYMTKD---------------------------GRISVAG-VASSNVG 390 (401)
T ss_dssp HHC-----CSSEEE-CCCC-HHHHHHHHHHHCEECCTT---------------------------CEEEGGG-CCTTTHH
T ss_pred CCC-----CeEEEe-cCCC-HHHHHHHHHhCCEEECCC---------------------------cEEEecc-CCHHHHH
Confidence 121 112233 3333 3445555 57766432 5999864 3567899
Q ss_pred HHHHHHHhh
Q psy15216 361 FTIKLLKMK 369 (2602)
Q Consensus 361 ~li~~L~~~ 369 (2602)
+++++|.++
T Consensus 391 ~la~ai~~v 399 (401)
T d7aata_ 391 YLAHAIHQV 399 (401)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999864
|
| >d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase homolog WlaK (PglE, Cj1121c) species: Campylobacter jejuni [TaxId: 197]
Probab=99.66 E-value=5.4e-16 Score=197.17 Aligned_cols=327 Identities=14% Similarity=0.119 Sum_probs=209.3
Q ss_pred HHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcC
Q psy15216 1410 VDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQ 1489 (2602)
Q Consensus 1410 ~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~ 1489 (2602)
++++.+.++..|... .| ...+++++.+++++|.. .+++++|+|.|+.++++++. +++||+|++|+
T Consensus 4 ~~~~~~~l~~~~~~~------~G----~~~~~fE~~~~~~~~~~--~~~~~~SgT~Al~lal~~l~---~~~gdeVi~p~ 68 (374)
T d1o69a_ 4 LKYIEEVFKSNYIAP------LG----EFVNRFEQSVKDYSKSE--NALALNSATAALHLALRVAG---VKQDDIVLASS 68 (374)
T ss_dssp HHHHHHHHHHTTTSC------TT----HHHHHHHHHHHHHHCCS--EEEEESCHHHHHHHHHHHTT---CCTTCEEEEES
T ss_pred HHHHHHHHhcCCcCC------CC----HHHHHHHHHHHHHHCcC--eEEEeCCHHHHHHHHHHHcC---CCCcCEEEeCC
Confidence 467777777643211 01 35788999999999975 79999999999999999986 58999999999
Q ss_pred CCCcchHHHHHHHHhCCcEEEEeccCCCCCc---ChhHHHhhccCCceEEEEeccccccccccChHHHHHHhhhcCCEEE
Q psy15216 1490 TEHKSVLDSIRKLENDGFRVTYLKPKNNGLI---TLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFH 1566 (2602)
Q Consensus 1490 ~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~i---d~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~~ia~~~gi~vi 1566 (2602)
.+|++...++..+ |+++++++++++... +.+.+...++++|++|+++|. .|...++++|.++|+++|++||
T Consensus 69 ~t~~a~~~~~~~~---g~~pv~~Di~~~~~~~~~~~~~~~~~~~~~~~aii~~~~---~G~~~d~~~i~~~~~~~~i~vI 142 (374)
T d1o69a_ 69 FTFIASVAPICYL---KAKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILTHL---YGNAAKMDEIVEICKENDIVLI 142 (374)
T ss_dssp SSCGGGTHHHHHT---TCEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEECG---GGCCCCHHHHHHHHHHTTCEEE
T ss_pred cchHhhHHHHhhc---cceeEecccccccccccccccccchhccccccccccccc---ccchhhhHHHHHHhhccCcchh
Confidence 9999998888877 999999999875433 334455777899999999988 8999999999999999999999
Q ss_pred EecccccCcccccCCCCC--ccEEEEccc--cccCCCceEEEEEecC-CCCccccccccCCc-ccc---CCCCCc-chhH
Q psy15216 1567 CDAAQAVGKIDINIQNYK--VDLMSFSAH--KIYGPKGIGALYIRRN-PRTRIEAQIHGGGH-EYG---LRSGTL-ATHQ 1636 (2602)
Q Consensus 1567 vD~a~~~g~~~~~l~~~~--~D~~v~S~~--K~~gp~G~G~l~~~~~-~~~~l~~~~~g~~~-~~~---~~~gt~-~~~~ 1636 (2602)
.|+||++|... .-...| .|+.++||| |.++..|.|+++.+++ ..++++.+...+.. ... ...|.. -+..
T Consensus 143 ED~a~a~g~~~-~~~~~G~~gd~~~fSf~~~K~l~tgeGG~i~tnn~~~~~~~~~~~~~g~~~~~~~~~~~~G~N~rm~e 221 (374)
T d1o69a_ 143 EDAAEALGSFY-KNKALGTFGEFGVYSYNGNKIITTSGGGMLIGKNKEKIEKARFYSTQARENCLHYEHLDYGYNYRLSN 221 (374)
T ss_dssp EECTTCTTCEE-TTEETTSSSSEEEEECCTTSSSCCSSCEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSSCCCBCBCCH
T ss_pred hhhhhhhcceE-CCeecCCCCceEEEeccCccccccccceeehhhhHHHHHhhccccccccccccccccccCCccccccc
Confidence 99999998743 211122 488888887 6555444588877653 33333222211111 111 112221 1122
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCC-CCCceEEEEEec------------------
Q psy15216 1637 IVGMGEAFRLAR-IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNN-RIPHNLNISFNF------------------ 1696 (2602)
Q Consensus 1637 ~~al~~aL~~~~-~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~-~~~~~~~~~~~~------------------ 1696 (2602)
+ .+|+...+ ..++...++.+++++++.+.|.+ ...+ +..+... .......+.+..
T Consensus 222 i---~Aaig~~qL~~l~~~i~~r~~i~~~y~~~L~~-~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (374)
T d1o69a_ 222 V---LGAIGVAQMEVLEQRVLKKREIYEWYKEFLGE-YFSF-LDELENSRSNRWLSTALINFDKNELNACQKDINISQKN 296 (374)
T ss_dssp H---HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTT-TEEC-CCCCTTEECCCSSEEEEESCCGGGSCCCCEEEECCCCC
T ss_pred h---hhhhhHHHHhhhhhhcchhHHHHHHHHhhccc-cccc-cccccCCCCChhheeeeeccccccccccccccccchhh
Confidence 2 22232111 34677778888888999999876 2211 1111111 111111111110
Q ss_pred ----CCcHHHHHhc--CCEEEccccccCCCCCChhHHH---HHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1697 ----IEGESLLMAI--KDIAVSSGSACTSASLEPSYVL---RALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1697 ----~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
.....+...| +||.+++.. .+.+.++.+.. ..++.++......|.|++++..|.+|++++++.|++.
T Consensus 297 ~~~~~~r~~l~~~L~~~gI~~r~~y--~pl~~~~~~~~~~~~~~pna~~~~~~~i~LP~~~~lt~~di~~I~~~I~~~ 372 (374)
T d1o69a_ 297 ITLHPKISKLIEDLKNKQIETRPLW--KAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVYEISKLILKS 372 (374)
T ss_dssp CCCCHHHHHHHHHHHHTTCCCBCCC--CCGGGCGGGTTCEEEECSHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHCCCCEEEeC--cchhhChhhhcCCCCCCHHHHHHHhCEEECcCCCCCCHHHHHHHHHHHHHH
Confidence 0124565666 788876533 22222222110 0011122233467999999999999999999999873
|
| >d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Citrobacter freundii [TaxId: 546]
Probab=99.66 E-value=4.6e-15 Score=182.79 Aligned_cols=307 Identities=13% Similarity=0.114 Sum_probs=209.6
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHH-HHhCCcEEE
Q psy15216 1432 GWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDGFRVT 1510 (2602)
Q Consensus 1432 ~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~-~~~~G~~v~ 1510 (2602)
++........+++.++.+.|.. ..++++++..|+..++.+++ ++||+|++++..|......... +.+.|+++.
T Consensus 58 ~R~~nPT~~~LE~~la~LEgg~--~a~~~sSGmaAi~~~l~~ll----~~Gd~vi~~~~~Yg~t~~~~~~~l~~~Gi~~~ 131 (397)
T d1y4ia1 58 TRLGNPTTDALEKKLAVLERGE--AGLATASGISAITTTLLTLC----QQGDHIVSASAIYGCTHAFLSHSMPKFGINVR 131 (397)
T ss_dssp CTTSCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHC----CTTCEEEEESSSCHHHHHHHHTHHHHTTCEEE
T ss_pred eCCCCHHHHHHHHHHHHHhCCc--cceeehHHHHHHHHHHhhcc----CCCCeeeeecccccccchhhhcccCCCceEee
Confidence 3333445788999999999864 57788999999999999987 8999999999999988777754 467799999
Q ss_pred EeccCCCCCcChhHHHhhccCCceEEEEeccccccccccChHHHHHHhhhcCCEEEEecccccCcccccCCCCCccEEEE
Q psy15216 1511 YLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSF 1590 (2602)
Q Consensus 1511 ~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~ 1590 (2602)
+++.. |++.++++|+++|++|++..|.||+..+.|+++|+++||++|+++++|.+-+.+...-++ ++|+|+++.
T Consensus 132 ~vd~~-----d~~~~~~~i~~~Tklv~~Esp~NP~l~v~Di~~i~~iA~~~gi~~vvDnT~atP~~~~Pl-~~GaDivih 205 (397)
T d1y4ia1 132 FVDAG-----KPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQQPL-QLGADIVVH 205 (397)
T ss_dssp EECTT-----SHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCGG-GGTCSEEEE
T ss_pred ccCCC-----CHHHHHHhcCCCCcEEEecCCcccceeecccHHHHHHhhcCCceEEecCcccCcccCcch-hcCCCEEEE
Confidence 99754 789999999999999999999999999999999999999999999999997766543333 468999999
Q ss_pred ccccccCCCc---eEEEEEecCCCCccccccccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15216 1591 SAHKIYGPKG---IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYN 1667 (2602)
Q Consensus 1591 S~~K~~gp~G---~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~ 1667 (2602)
|..|+.+..+ .|.++.+++.+.+.+-.. .+....+++++...+.+..+|+- +.-++++..+.+..+.+
T Consensus 206 S~TKyi~Ghsdvl~G~v~~~~~~~~~~r~~~-----~~~~~G~~l~p~~a~l~~rgl~T----L~lRm~~~~~nA~~lA~ 276 (397)
T d1y4ia1 206 SVTKYINGHGDVIGGIIVGKQEFIDQARFVG-----LKDITGGCMSPFNAWLTLRGVKT----LGIRMERHCENALKIAR 276 (397)
T ss_dssp ETTTTTTCSSCCCCEEEEECHHHHHHHHHTH-----HHHTTCCCCCHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHH
T ss_pred ehhhhcCCCcceeeeccCCCHHHHHHHHHHH-----HHhCcCCcCCHHHHHHHHcCcCc----HHHHHHHHHHHHHHHHH
Confidence 9999665444 688888776544321100 01122345555444444455543 34556667777777788
Q ss_pred HHhhcCCcEE-EeCCCCCCCC-----------ceEEEEEecCC----cHHHHHhcC--CEEEccccccC---CC-----C
Q psy15216 1668 GLMESIEEIY-INGDMNNRIP-----------HNLNISFNFIE----GESLLMAIK--DIAVSSGSACT---SA-----S 1721 (2602)
Q Consensus 1668 ~L~~~~~gl~-i~~~~~~~~~-----------~~~~~~~~~~~----~~~~~~~L~--gI~v~~g~~~~---~~-----~ 1721 (2602)
.|++ .|.+. +.-|.-...| .+..++|.... ...|+..|+ .+.++-|.... .+ .
T Consensus 277 ~L~~-hp~V~~V~yPgl~s~p~h~~~~~~~~g~gg~~sf~~~~~~~~~~~f~~~L~l~~~a~SlGg~eSLi~~p~~~th~ 355 (397)
T d1y4ia1 277 FLEG-HPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGGLEAGRRMINSVELCLLAVSLGDTETLIQHPASMTHS 355 (397)
T ss_dssp HHHT-CTTEEEEECTTSTTCTTHHHHHHHCSSCCSEEEEEETTHHHHHHHHHHTCSSSEECSCCSCSSCEEECTTTTTTS
T ss_pred HHHh-CCCcCeEeCCCCCCCccccccccccCCCCeEEEEEecCCHHHHHHHHHcCCccceeeccCcccceeeCccccccc
Confidence 8877 67764 3322111111 13344443222 235666652 33333332211 00 1
Q ss_pred CChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1722 LEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1722 ~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
..+.......|+++ +.||||+|..+.++-++.+-++|++
T Consensus 356 ~~~~e~r~~~Gi~~----~liRlsvGlEd~~DLi~Dl~~AL~~ 394 (397)
T d1y4ia1 356 PVAPEERLKAGITD----GLIRLSVGLEDPEDIINDLEHAIRK 394 (397)
T ss_dssp SSCHHHHHHTTCCT----TEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHcCCCc----CEEEEEeccCCHHHHHHHHHHHHHH
Confidence 12333445677764 8999999987766666666666665
|
| >d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase homolog WlaK (PglE, Cj1121c) species: Campylobacter jejuni [TaxId: 197]
Probab=99.65 E-value=1.2e-15 Score=193.98 Aligned_cols=329 Identities=13% Similarity=0.092 Sum_probs=210.7
Q ss_pred HHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcC
Q psy15216 14 VDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQ 93 (2602)
Q Consensus 14 ~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~ 93 (2602)
++++.+.+.+.|... .| +..+++++.+++++|.+ .+++++|+|.|+.++++++. +++||+|++|+
T Consensus 4 ~~~~~~~l~~~~~~~------~G----~~~~~fE~~~~~~~~~~--~~~~~~SgT~Al~lal~~l~---~~~gdeVi~p~ 68 (374)
T d1o69a_ 4 LKYIEEVFKSNYIAP------LG----EFVNRFEQSVKDYSKSE--NALALNSATAALHLALRVAG---VKQDDIVLASS 68 (374)
T ss_dssp HHHHHHHHHHTTTSC------TT----HHHHHHHHHHHHHHCCS--EEEEESCHHHHHHHHHHHTT---CCTTCEEEEES
T ss_pred HHHHHHHHhcCCcCC------CC----HHHHHHHHHHHHHHCcC--eEEEeCCHHHHHHHHHHHcC---CCCcCEEEeCC
Confidence 577888887633111 11 35788999999999976 79999999999999999986 58999999999
Q ss_pred CCCcccHHHHHHHHhCCcEEEEeccCCCCcc---ChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHhcCCEEE
Q psy15216 94 TEHKSVLDSIRKLENDGFRVTYLKPKNNGLI---TLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFH 170 (2602)
Q Consensus 94 ~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~l---d~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~~g~~li 170 (2602)
.+|++...++..+ |+++++++++++... +.+.+...++++|++++++|. .|...++++|.++|+++|++||
T Consensus 69 ~t~~a~~~~~~~~---g~~pv~~Di~~~~~~~~~~~~~~~~~~~~~~~aii~~~~---~G~~~d~~~i~~~~~~~~i~vI 142 (374)
T d1o69a_ 69 FTFIASVAPICYL---KAKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILTHL---YGNAAKMDEIVEICKENDIVLI 142 (374)
T ss_dssp SSCGGGTHHHHHT---TCEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEECG---GGCCCCHHHHHHHHHHTTCEEE
T ss_pred cchHhhHHHHhhc---cceeEecccccccccccccccccchhccccccccccccc---ccchhhhHHHHHHhhccCcchh
Confidence 9999998888877 999999999875432 333445677889999999888 8999999999999999999999
Q ss_pred EecccccccccccCCCC--CccEEEeccc--cccCCCCcEEEEEec-CCCCcccceecCCCc-cccc---cccCcchhHH
Q psy15216 171 CDAAQAVGKIDINIQNY--KVDLMSFSAH--KIYGPKGIGALYIRR-NPRTRIEAQIHGGGH-EYGL---RSGTLATHQI 241 (2602)
Q Consensus 171 vD~a~a~g~~~~dl~~~--~~D~~~~S~~--K~~Gp~G~G~l~~~~-~~~~~l~~~~~g~~~-~~~~---~~gt~~~~~~ 241 (2602)
.|+||++|... .-... -.|+.++||| |.++..|.|+++.++ ++++.++.+...+.. .... ..|.---+.-
T Consensus 143 ED~a~a~g~~~-~~~~~G~~gd~~~fSf~~~K~l~tgeGG~i~tnn~~~~~~~~~~~~~g~~~~~~~~~~~~G~N~rm~e 221 (374)
T d1o69a_ 143 EDAAEALGSFY-KNKALGTFGEFGVYSYNGNKIITTSGGGMLIGKNKEKIEKARFYSTQARENCLHYEHLDYGYNYRLSN 221 (374)
T ss_dssp EECTTCTTCEE-TTEETTSSSSEEEEECCTTSSSCCSSCEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSSCCCBCBCCH
T ss_pred hhhhhhhcceE-CCeecCCCCceEEEeccCccccccccceeehhhhHHHHHhhccccccccccccccccccCCccccccc
Confidence 99999998753 22111 1378888876 655444457776654 344444332222111 1111 1121111111
Q ss_pred HHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc--------------------
Q psy15216 242 VGMGEAFRL-ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-------------------- 300 (2602)
Q Consensus 242 ~al~~al~~-~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~-------------------- 300 (2602)
+.+|+-. ....++.+.++.+++++++.+.|.. ...+...........+...+.+..
T Consensus 222 --i~Aaig~~qL~~l~~~i~~r~~i~~~y~~~L~~-~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (374)
T d1o69a_ 222 --VLGAIGVAQMEVLEQRVLKKREIYEWYKEFLGE-YFSFLDELENSRSNRWLSTALINFDKNELNACQKDINISQKNIT 298 (374)
T ss_dssp --HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTT-TEECCCCCTTEECCCSSEEEEESCCGGGSCCCCEEEECCCCCCC
T ss_pred --hhhhhhHHHHhhhhhhcchhHHHHHHHHhhccc-cccccccccCCCCChhheeeeeccccccccccccccccchhhcc
Confidence 1222221 1235677788888899999999866 222111111111111111121110
Q ss_pred --cChhHHHHHh--CCeEEcccccCCCCCCChHHHHH---HcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 301 --IEGESLLMAI--KDIAVSSGSACTSASLEPSYVLR---ALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 301 --~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~---~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
.+...+.+.| +||.+++.. .+.+.++.+... .+...+......|.++++++.|.+|++++++.|++.
T Consensus 299 ~~~~r~~l~~~L~~~gI~~r~~y--~pl~~~~~~~~~~~~~~pna~~~~~~~i~LP~~~~lt~~di~~I~~~I~~~ 372 (374)
T d1o69a_ 299 LHPKISKLIEDLKNKQIETRPLW--KAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVYEISKLILKS 372 (374)
T ss_dssp CCHHHHHHHHHHHHTTCCCBCCC--CCGGGCGGGTTCEEEECSHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHCCCCEEEeC--cchhhChhhhcCCCCCCHHHHHHHhCEEECcCCCCCCHHHHHHHHHHHHHH
Confidence 1234566777 788877543 233333322100 011112223467999999999999999999999863
|
| >d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.65 E-value=2.1e-15 Score=185.87 Aligned_cols=308 Identities=16% Similarity=0.121 Sum_probs=203.5
Q ss_pred CcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHHHH-HhCC
Q psy15216 32 NHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDG 110 (2602)
Q Consensus 32 ~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~-~~~G 110 (2602)
.|.|++...+..+.+++++|.+-|+. ..+.++|+..|+.+ +.++. ++||+|+++..-|.......+.. .+.|
T Consensus 40 ~~~Y~R~~nPt~~~le~~la~LE~~~--~a~~fsSGMaAisa-ll~ll----~~Gd~vv~~~~~Yg~t~~l~~~~~~~~g 112 (380)
T d1ibja_ 40 PYDYTRSGNPTRDALESLLAKLDKAD--RAFCFTSGMAALSA-VTHLI----KNGEEIVAGDDVYGGSDRLLSQVVPRSG 112 (380)
T ss_dssp SCSBTTTCCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHH-HHTTS----CTTCEEEEESSCCHHHHHHHHHTSGGGT
T ss_pred CceeeCCCChHHHHHHHHHHHHcCCc--eEEehhhHHHHHHH-HHHhh----CCCCEEEEEecccccccchhhhhhcccc
Confidence 45566666677899999999999964 56777777888875 44555 79999999999999988877664 6779
Q ss_pred cEEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHhcCCEEEEecccccccccccCCCCCcc
Q psy15216 111 FRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVD 190 (2602)
Q Consensus 111 ~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~~g~~livD~a~a~g~~~~dl~~~~~D 190 (2602)
+++.+++.. +++.++++++++|++|++..|.||+..+.|+++|+++||++|++++||.+.+.+...-.+ ++|+|
T Consensus 113 i~~~~~d~~-----~~~~~~~ai~~~t~li~~EtpsNP~l~v~Di~~i~~iA~~~g~~~vVDnT~atP~~~~Pl-~~GaD 186 (380)
T d1ibja_ 113 VVVKRVNTT-----KLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVLSRPL-ELGAD 186 (380)
T ss_dssp CEEEEECTT-----SHHHHHHHCCSSEEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEECTTTCTTTCCGG-GTTCS
T ss_pred ccccccCcc-----hHHHHHHHhccCccEEEeccccccccccccHHHHHHHHHHcCCeEEeecccccccccccc-ccCCC
Confidence 999998743 789999999999999999999999999999999999999999999999998766543222 46899
Q ss_pred EEEeccccccCCCC---cEEEEEecC-CCCcccceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy15216 191 LMSFSAHKIYGPKG---IGALYIRRN-PRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQ 266 (2602)
Q Consensus 191 ~~~~S~~K~~Gp~G---~G~l~~~~~-~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~ 266 (2602)
+++.|.+|+++..| .|.++.+++ +.+.+.... .....+++....+.+..+++- +..+.+++.+++
T Consensus 187 iVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~~~~~~-------~~~G~~l~p~~a~ll~rgl~T----l~lRm~~~~~nA 255 (380)
T d1ibja_ 187 IVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQ-------NSEGSGLAPFDCWLCLRGIKT----MALRIEKQQENA 255 (380)
T ss_dssp EEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHH-------HHTTCBCCHHHHHHHHHHHTT----HHHHHHHHHHHH
T ss_pred EEEecccceeccccCccccccccchhhHHHHHHhhc-------cccCCcCCHHHHHHHHhcchh----hhhhHHHHHHHH
Confidence 99999999776555 677777643 223332221 222345666666656556653 345555666666
Q ss_pred HHHHHHHhhccCceE-EeCC--CCC---------CCCceEEEEEccc---ChhHHHHHhC--CeEEcccccCC----CC-
Q psy15216 267 KRLYNGLMESIEEIY-INGD--MNN---------RIPHNLNISFNFI---EGESLLMAIK--DIAVSSGSACT----SA- 324 (2602)
Q Consensus 267 ~~l~~~L~~~~~g~~-l~~~--~~~---------~~~~~~~~~~~~~---~~~~~~~~L~--gI~v~~g~~~~----~~- 324 (2602)
..+.+.|++ .|.+. ++-| +++ ....+..+.|... ....+++.|+ .+.++-|...+ +.
T Consensus 256 ~~lA~~L~~-hp~V~~V~yPgl~s~p~~~~a~~~~~~~g~~~s~~~~~~~~a~~f~d~l~l~~~a~SlG~~~SLi~~p~~ 334 (380)
T d1ibja_ 256 RKIAMYLSS-HPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGSVALSKHLVETTKYFSIAVSFGSVKSLISMPCF 334 (380)
T ss_dssp HHHHHHHHT-CTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEECSCHHHHHHHHHHCSSSEECSCCCSSSCEEECTTT
T ss_pred HHHHHHHHh-CCCeeEEeccccccCccccccccccccccccccccccHHHHHHHHHHhCCcCeEeeccCCccccccCchh
Confidence 666677765 45443 2211 111 0111222333222 2345666663 33333332221 10
Q ss_pred --CC-ChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 325 --SL-EPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 325 --~~-~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
|. .+.-.....|++ ++.||||+|....++-++.+-++|+.
T Consensus 335 ~th~~~~~e~r~~~Gi~----~~lvRlSvGlE~~eDLi~Dl~qAl~~ 377 (380)
T d1ibja_ 335 MSHASIPAEVREARGLT----EDLVRISAGIEDVDDLISDLDIAFKT 377 (380)
T ss_dssp TTTCSCCSSSSSSSSCC----TTCEEEECCSSCHHHHHHHHHHHHHS
T ss_pred hhhhcCCHHHHHHcCCC----cCeEEEEeccCCHHHHHHHHHHHHHh
Confidence 00 001111223443 37899999987666666666666653
|
| >d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=99.65 E-value=7.6e-15 Score=181.25 Aligned_cols=308 Identities=15% Similarity=0.109 Sum_probs=207.9
Q ss_pred CcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHHHH-HhCC
Q psy15216 32 NHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDG 110 (2602)
Q Consensus 32 ~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~-~~~G 110 (2602)
.+.|++...+....+++++|++.|.. ..++++|+..|+..++.++. ++||+|+++..-|.......... .+.|
T Consensus 58 ~~~Y~R~~nPt~~~LE~~la~LEgg~--~a~~~sSGMaAi~~~l~~l~----~~Gd~iv~~~~~Yg~t~~l~~~~~~~~g 131 (398)
T d1qgna_ 58 SFEYGRYGNPTTVVLEEKISALEGAE--STLLMASGMCASTVMLLALV----PAGGHIVTTTDCYRKTRIFIETILPKMG 131 (398)
T ss_dssp CCCBGGGCCHHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHHS----CSSCEEEEETTSCHHHHHHHHHTGGGGT
T ss_pred CceecCCCChHHHHHHHHHHHHhCCc--eEEEecCcchHHHHHHhhcc----cccccccccccccchhhhhhcccccccc
Confidence 46677777778899999999999964 67888999999999999987 89999999999999988777655 6779
Q ss_pred cEEEEeccCCCCccChH-HHHhhccCCceEEEEecccCcccccccHHHHHHHHHhcCCEEEEecccccccccccCCCCCc
Q psy15216 111 FRVTYLKPKNNGLITLS-QLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKV 189 (2602)
Q Consensus 111 ~~v~~v~~~~~~~ld~e-~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~~g~~livD~a~a~g~~~~dl~~~~~ 189 (2602)
+++.+++.. +.+ ..++.+.++|++|++..|.||+..+.|+++|+++||++|++++||.+.+.+... +.-++|+
T Consensus 132 i~~~~~~~~-----~~~~~~~~~~~~~t~~v~~EspsNP~l~v~Di~~ia~ia~~~g~~~vVDnT~atP~~~-~Pl~~Ga 205 (398)
T d1qgna_ 132 ITATVIDPA-----DVGALELALNQKKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQ-KALALGA 205 (398)
T ss_dssp CEEEEECSS-----CHHHHHHHHHHSCEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTC-CTTTTTC
T ss_pred ccccccccc-----chhhhhhhhccccceEEEccCccccccccchHHHHHHHHhhcCCEEEecceeeccccC-CchhhCC
Confidence 999998742 344 344566799999999999999999999999999999999999999998766542 3335789
Q ss_pred cEEEeccccccCCCC---cEEEEEecCCCCcccceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy15216 190 DLMSFSAHKIYGPKG---IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQ 266 (2602)
Q Consensus 190 D~~~~S~~K~~Gp~G---~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~ 266 (2602)
|+++.|.+|.+|..| .|.+..+++....++... ....++++....+.+..+++- +.-+.++..+++
T Consensus 206 DiVihS~TKy~~Ghsdv~~G~v~~~~~~~~~~~~~~-------~~~G~~l~p~~a~ll~rgl~T----L~lRm~~~~~nA 274 (398)
T d1qgna_ 206 DLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLH-------HILGGALNPNAAYLIIRGMKT----LHLRVQQQNSTA 274 (398)
T ss_dssp SEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHHH-------HHHCCCCCHHHHHHHHHHGGG----HHHHHHHHHHHH
T ss_pred CEEEEechhhcCcccceeehhhcchhhhhhhhhhhc-------ccCCCcCCHHHHHHHHhcchH----HHHHHHHHHHHH
Confidence 999999999776555 577776665555444322 122345555555545455543 345555666666
Q ss_pred HHHHHHHhhccCceE-EeCC--CCC---------CCCceEEEEEccc----ChhHHHHHhC--CeEEcccccCCCC----
Q psy15216 267 KRLYNGLMESIEEIY-INGD--MNN---------RIPHNLNISFNFI----EGESLLMAIK--DIAVSSGSACTSA---- 324 (2602)
Q Consensus 267 ~~l~~~L~~~~~g~~-l~~~--~~~---------~~~~~~~~~~~~~----~~~~~~~~L~--gI~v~~g~~~~~~---- 324 (2602)
..+.+.|.+ .|.+. ++-| +++ ....+..++|... ....+++.|+ .+..+-|...+--
T Consensus 275 ~~lA~~L~~-hp~V~~V~yPgL~s~p~~~~~~~~~~g~g~~~sf~~~g~~~~a~~f~~~L~l~~~a~SlGg~~SLi~~p~ 353 (398)
T d1qgna_ 275 LRMAEILEA-HPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDLLTTAKFVDALKIPYIAPSFGGCESIVDQPA 353 (398)
T ss_dssp HHHHHHHHT-CTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCHHHHHHHHHHCSSSEECSCCCSSSCEEECHH
T ss_pred HHHHHHHHh-CCCeeecCCCCCCCCcchhhhhhhcCCCCceeeeeecCCHHHHHHHHHcCCcceeeeCCCCCcceeeCcc
Confidence 777777766 56654 3222 111 0111233444321 2345777774 3333334322210
Q ss_pred ---C-CChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHH
Q psy15216 325 ---S-LEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK 367 (2602)
Q Consensus 325 ---~-~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~ 367 (2602)
| ..+.......|+++ +.||+|+|..+.++-++.+-++|+
T Consensus 354 ~~th~~~~~~~~~~~Gi~~----~liRlSvGlEd~eDLi~Dl~~AL~ 396 (398)
T d1qgna_ 354 IMSYWDLSQSDRAKYGIMD----NLVRFSFGVEDFDDLKADILQALD 396 (398)
T ss_dssp HHHSTTSCHHHHHTTTCCS----SEEEEECCSSCHHHHHHHHHHHHH
T ss_pred hhccccCCHHHHHhcCCCc----CEEEEEeccCCHHHHHHHHHHHHh
Confidence 0 11222334566653 889999998665555555555554
|
| >d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=99.65 E-value=2e-15 Score=185.38 Aligned_cols=355 Identities=12% Similarity=0.168 Sum_probs=222.1
Q ss_pred CcccHHHHHHHHHhcCCCccccceeeeeceeeeccCCCCCCCHHHHHHHHHHHhhcc--CCCCCccchhHHHHHHHHHHH
Q psy15216 1365 SPSKFIEIKNSLEMTGFKAESSGIVMRPYTNIVFKDATTPIDPRVVDKMIPYLRVQF--GNPASRNHIYGWTAEKAIEKA 1442 (2602)
Q Consensus 1365 ~~~~~~~v~~aL~~~g~~~~~~ei~~iP~~~v~L~~~~~~~~~~v~eal~~~l~~~~--~np~~~~~~~~~~~~~~~~~l 1442 (2602)
||+-+..+.+..+. ....+.++|.. .-.++.+.+++...+.+.+ ++|+...|.......++..-+
T Consensus 12 D~ei~~~i~~e~~r-----q~~~l~LiaSE--------N~~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la 78 (463)
T d2a7va1 12 DPEMWELLQREKDR-----QCRGLELIASE--------NFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLC 78 (463)
T ss_dssp CHHHHHHHHHHHHH-----HHHSEECCTTC--------CCCCHHHHHHHTSGGGTCCCCC------------CTHHHHHH
T ss_pred CHHHHHHHHHHHHH-----HhcCeeEeccC--------CcCCHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHH
Confidence 44445555444432 23345566643 3567788999988887754 677765555444455666667
Q ss_pred HHHHHHHhCCCCCc--EEE-eCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHH-----HHHhCCc--EEEEe
Q psy15216 1443 RNEVAQLIYADPRE--IIW-TSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIR-----KLENDGF--RVTYL 1512 (2602)
Q Consensus 1443 r~~ia~~~g~~~~~--iv~-t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~-----~~~~~G~--~v~~v 1512 (2602)
+++.+++|++++.. |=+ ..|++.|+..++.+++ +|||+|+..++.+..+...-. .....|. +....
T Consensus 79 ~~ra~~lF~~~~a~w~vNVqp~SGs~An~av~~all----~pgD~Im~l~l~~GGHlshg~~~~~~~~~~~g~~~~~~~Y 154 (463)
T d2a7va1 79 QRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALL----QPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPY 154 (463)
T ss_dssp HHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHC----CSCEECCC-------------------------------C
T ss_pred HHHHHHHhCCCchhccCCccccccHHHHHHHHHHHc----CCCceEEeeccCcCcccccccccccccccceeeEeeeeee
Confidence 88899999998763 222 3478899999999987 999999999888777654331 1111233 23333
Q ss_pred ccCC-CCCcChhHHHhhcc-CCceEEEEeccccccccccChHHHHHHhhhcCCEEEEecccccCcc-----cccCCCCCc
Q psy15216 1513 KPKN-NGLITLSQLEEKIC-SDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKI-----DINIQNYKV 1585 (2602)
Q Consensus 1513 ~~~~-~~~id~d~l~~~i~-~~t~lv~l~~~~n~tG~~~~l~~I~~ia~~~gi~vivD~a~~~g~~-----~~~l~~~~~ 1585 (2602)
.+++ ++.||++++++.+. .++++|++-.-. .-..+|++++.++|++.|+++++|++|..|.+ +-++. .+
T Consensus 155 ~~d~~~~~IDyd~~~~~a~~~kPklIi~G~S~--y~r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sP~~--~a 230 (463)
T d2a7va1 155 KLNPKTGLIDYNQLALTARLFRPRLIIAGTSA--YARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFK--HA 230 (463)
T ss_dssp CBCTTTCSBCHHHHHHHHHHHCCSEEEECCSS--CCSCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGG--TC
T ss_pred eccCCCCcCcHHHHHHHHhhcCCceEEecccc--cccccCHHHHHHHhhcccceEEechhhhhHHhhhhhhcChhh--hh
Confidence 4453 67899999999986 478888775543 33566899999999999999999999976543 33342 36
Q ss_pred cEEEEcccc-ccCCCceEEEEEecCC---------------CCccccccccCCccccCCCCCcchhHHHHHHHHHHH-HH
Q psy15216 1586 DLMSFSAHK-IYGPKGIGALYIRRNP---------------RTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRL-AR 1648 (2602)
Q Consensus 1586 D~~v~S~~K-~~gp~G~G~l~~~~~~---------------~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~-~~ 1648 (2602)
|++++|+|| +.||+| |+++.+++. .+++....+.+ ..|.|..+.++|++.++.. ..
T Consensus 231 Dvvt~tTHKTlrGPrg-GiIl~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg------~qggph~h~iAa~Ava~~ea~~ 303 (463)
T d2a7va1 231 DIVTTTTHKTLRGARS-GLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPS------LQGGPHNHAIAAVAVALKQACT 303 (463)
T ss_dssp SEEEEESSGGGCSCSC-EEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTT------TCCSCCHHHHHHHHHHHHHHHS
T ss_pred hhhhchhhhhhcCCCc-eEEEEcccccccccccCccchhHHHHHhhhhcCcc------cchhhhhhhHHHHHHHHHHhcC
Confidence 999999999 889997 999988742 22333333222 2367888999999999884 44
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEe--cCCcHHHHHhc--CCEEEccccccCCCCCCh
Q psy15216 1649 IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN--FIEGESLLMAI--KDIAVSSGSACTSASLEP 1724 (2602)
Q Consensus 1649 ~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~L--~gI~v~~g~~~~~~~~~~ 1724 (2602)
..++...++..++++.|.+.|.+ .|+.+..... -.++..+.+. +.++......| .||.+..-..+..+
T Consensus 304 ~~fk~Ya~qVv~NAk~La~~L~~--~G~~vv~ggT--dnHlvlvdl~~~~~~G~~ae~~Le~~gI~~Nkn~iP~D~---- 375 (463)
T d2a7va1 304 PMFREYSLQVLKNARAMADALLE--RGYSLVSGGT--DNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDR---- 375 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--TTCEEGGGSC--SSSEEEEECTTTTCCHHHHHHHHHHTTEECEEECCTTCC----
T ss_pred chHHHHHHHHHHHHHHHHHHHHh--CCCeeecCCC--CCceeeeeccccCCCHHHHHHHHHhccCccCCccCCCCC----
Confidence 56889999999999999999998 6888874322 2344445443 23444444444 68877644333221
Q ss_pred hHHHHHcCCCccccCCeEEEecCC----CCCHHHHHHHHHHHHHh
Q psy15216 1725 SYVLRALGCNDELAHSSIRFTIGR----FTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1725 ~~~~~~~~~~~~~~~~~iRls~~~----~~t~edid~li~~L~~~ 1765 (2602)
.....+.|||+... ...++|+.++.+.|.+.
T Consensus 376 ----------~~~~~sGiRiGT~a~TtrG~~e~dm~~iA~~I~~~ 410 (463)
T d2a7va1 376 ----------SAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEG 410 (463)
T ss_dssp ----------CSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred ----------CCCCCCceEeCCHHHHhCCCCHHHHHHHHHHHHHH
Confidence 11223789998654 34679999999888763
|
| >d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Escherichia coli [TaxId: 562]
Probab=99.65 E-value=3.9e-15 Score=183.29 Aligned_cols=309 Identities=14% Similarity=0.083 Sum_probs=210.0
Q ss_pred CcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHHHH-HhCC
Q psy15216 32 NHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDG 110 (2602)
Q Consensus 32 ~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~-~~~G 110 (2602)
.|.|++...+..+.+++.++++-|.. ..++.+|+..|+..++.++. ++||+|++++..|.......... .+.|
T Consensus 41 ~~~Y~R~~nPt~~~le~~la~LEgg~--~a~~~sSGMaAi~~~l~~l~----~~gd~vv~~~~~yg~t~~~~~~~~~~~g 114 (384)
T d1cs1a_ 41 AHDYSRRGNPTRDVVQRALAELEGGA--GAVLTNTGMSAIHLVTTVFL----KPGDLLVAPHDCYGGSYRLFDSLAKRGC 114 (384)
T ss_dssp SCSBTTTCCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHC----CTTCEEEEETTCCHHHHHHHHHHHTTTS
T ss_pred CCcccCCCCHHHHHHHHHHHHHhCCC--ceEEecChHHHHHHHHhhcc----cccceecccccccchhhhhhhhhhcccc
Confidence 35566666778899999999999964 67888888999999999888 89999999999998877776555 5568
Q ss_pred cEEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHhcCCEEEEecccccccccccCCCCCcc
Q psy15216 111 FRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVD 190 (2602)
Q Consensus 111 ~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~~g~~livD~a~a~g~~~~dl~~~~~D 190 (2602)
..+.+++. .|.+.+++++.++|++|++..|.||+..+.|+++|+++||++|++++||.+.+.|... ..-++|+|
T Consensus 115 ~~~~~~d~-----~d~~~~~~~~~~~t~~v~~EspsNP~l~v~Di~~i~~ia~~~g~~~vVDNT~atP~~~-~Pl~~GaD 188 (384)
T d1cs1a_ 115 YRVLFVDQ-----GDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQ-NPLALGAD 188 (384)
T ss_dssp CEEEEECT-----TCHHHHHHHHHTCCSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTC-CGGGGTCS
T ss_pred cccccccC-----CCHHHHHhhccccccEEEEeccccccceeccHHHHhhhhhhcCcEEEEeccccCcccc-cccccCCC
Confidence 88888864 3789999999999999999999999999999999999999999999999998766543 22346899
Q ss_pred EEEeccccccCCCC---cEEEEEecCC-CCcccceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy15216 191 LMSFSAHKIYGPKG---IGALYIRRNP-RTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQ 266 (2602)
Q Consensus 191 ~~~~S~~K~~Gp~G---~G~l~~~~~~-~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~ 266 (2602)
+++.|.+|.++..| .|+++.+.+. ...+.... .....+++....+.+..+|+- +.-+.++..+++
T Consensus 189 iVvhS~TKyi~Ghsdv~~G~vv~~~~~~~~~~~~~~-------~~~G~~~~p~~a~ll~rgL~T----L~lRm~~~~~nA 257 (384)
T d1cs1a_ 189 LVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWA-------NNIGVTGGAFDSYLLLRGLRT----LVPRMELAQRNA 257 (384)
T ss_dssp EEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHH-------HHHTCBCCHHHHHHHHHHHTT----HHHHHHHHHHHH
T ss_pred EEEEccccccccCCCcccccccCCchhhhhhhhhhh-------hhhhhccccccHHHHhhccch----hHHHHHHHHHHH
Confidence 99999999777665 5767765432 22222111 112234454444444445543 445556667777
Q ss_pred HHHHHHHhhccCceEE-eCC--CCCC-----------CCceEEEEEccc--ChhHHHHHhC--CeEEcccccCC----C-
Q psy15216 267 KRLYNGLMESIEEIYI-NGD--MNNR-----------IPHNLNISFNFI--EGESLLMAIK--DIAVSSGSACT----S- 323 (2602)
Q Consensus 267 ~~l~~~L~~~~~g~~l-~~~--~~~~-----------~~~~~~~~~~~~--~~~~~~~~L~--gI~v~~g~~~~----~- 323 (2602)
..+.+.|++ .|.+.- +-| +++. ....+.|.+.+. ....+++.|+ .+.++-|...+ +
T Consensus 258 ~~lA~~L~~-hp~V~~V~yPgL~s~p~h~l~~r~~~g~gg~~sf~l~~~~~~a~~f~~~L~l~~~a~SlGg~eSLi~~p~ 336 (384)
T d1cs1a_ 258 QAIVKYLQT-QPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLRRFLGGLSLFTLAESLGGVESLISHAA 336 (384)
T ss_dssp HHHHHHHTT-CTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSCHHHHHHHHHTCSSSEEBSCCCSSSCEEEEGG
T ss_pred HHHHHhccc-CCceeeeeeccccchhHHHHHHhhcCCCcceeEEeecchHHHHHHHHHhCCcceeccccCCccceecccc
Confidence 777777766 566542 222 1111 122333333321 2345666663 33333332211 0
Q ss_pred --C-CCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 324 --A-SLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 324 --~-~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
. ...+.......|+++ +.||+|+|....++-++.|-++|+.
T Consensus 337 ~~th~~~~~e~r~~~Gi~~----~lvRlSvGlEd~eDLi~Dl~~AL~a 380 (384)
T d1cs1a_ 337 TMTHAGMAPEARAAAGISE----TLLRISTGIEDGEDLIADLENGFRA 380 (384)
T ss_dssp GTTTTTSCHHHHHHHTCCT----TEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred ccccccCCHHHHHhcCCCc----CeEEEEeccCCHHHHHHHHHHHHHH
Confidence 0 112334456678764 8899999987666655566555553
|
| >d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Escherichia coli [TaxId: 562]
Probab=99.63 E-value=1.1e-14 Score=180.29 Aligned_cols=225 Identities=14% Similarity=0.124 Sum_probs=172.8
Q ss_pred cchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHHH-HHhCCc
Q psy15216 33 HIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDGF 111 (2602)
Q Consensus 33 ~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~-~~~~G~ 111 (2602)
+.|++...+..+.+++.++++-|+. ..+..+|+..|+..++.++. ++||+|+++..-|......+.. +.+.|+
T Consensus 50 ~~Y~R~~nPt~~~le~~la~LEg~~--~a~~~~SGMaAi~~~l~~l~----~~Gd~iv~~~~~Yg~T~~l~~~~l~~~Gi 123 (391)
T d1cl1a_ 50 LFYGRRGTLTHFSLQQAMCELEGGA--GCVLFPCGAAAVANSILAFI----EQGDHVLMTNTAYEPSQDFCSKILSKLGV 123 (391)
T ss_dssp CCCTTTCCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHC----CTTCEEEEETTSCHHHHHHHHHTGGGGTC
T ss_pred eEeECCCChhHHHHHHHHHHHhCCc--cEEEeccccceeeehhhccc----CCCCeEEEecccccchhhhhhhccccccc
Confidence 4566666678899999999999964 67888999999999999988 8999999999999998888765 477899
Q ss_pred EEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHh--cCCEEEEecccccccccccCCCCCc
Q psy15216 112 RVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRS--KGVIFHCDAAQAVGKIDINIQNYKV 189 (2602)
Q Consensus 112 ~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~--~g~~livD~a~a~g~~~~dl~~~~~ 189 (2602)
++.+++.. |.++++++++++|++|++..|.||+..+.|+++|+++|++ +|++++||.+.+.+... +.-++|+
T Consensus 124 ~~~~~d~~-----d~~~~~~~i~~~t~~i~~EtpsNP~l~v~Di~~i~~~a~~~~~g~~~vVDnT~atP~~~-~Pl~~Ga 197 (391)
T d1cl1a_ 124 TTSWFDPL-----IGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLF-KALDFGI 197 (391)
T ss_dssp EEEEECTT-----CGGGGGGTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEECTTTTTTSS-CGGGGTC
T ss_pred ccccccCc-----cccccccccccccceeeecccCcccccccccHHHHHHHHhccCCcEEEEeccccchhhh-ccccccc
Confidence 99998753 6889999999999999999999999999999999999976 59999999998776642 2234689
Q ss_pred cEEEeccccccCCCC---cEEEEEecCCCCcccceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy15216 190 DLMSFSAHKIYGPKG---IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQ 266 (2602)
Q Consensus 190 D~~~~S~~K~~Gp~G---~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~ 266 (2602)
|+++.|.+|+++..| .|.++.+++....+.... ....++++....+.+..+++- +..+.++..+++
T Consensus 198 DivvhS~TKy~~GhsdvlgG~vv~~~~~~~~~~~~~-------~~~G~~~~p~~a~ll~rgl~T----L~lR~~~~~~nA 266 (391)
T d1cl1a_ 198 DVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENA-------YLMGQMVDADTAYITSRGLRT----LGVRLRQHHESS 266 (391)
T ss_dssp SEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHH-------HHTTCCCCHHHHHHHHHHHTT----HHHHHHHHHHHH
T ss_pred ceEEeecchhccccccccccceeccccccccchhhh-------hcccccCCchhhhhhhccchh----HHHHHHHHHHHH
Confidence 999999999776555 677777776555443221 122344555444444444543 345555666666
Q ss_pred HHHHHHHhhccCceE
Q psy15216 267 KRLYNGLMESIEEIY 281 (2602)
Q Consensus 267 ~~l~~~L~~~~~g~~ 281 (2602)
..+.+.|++ .|.+.
T Consensus 267 ~~vA~~L~~-hp~V~ 280 (391)
T d1cl1a_ 267 LKVAEWLAE-HPQVA 280 (391)
T ss_dssp HHHHHHHHT-CTTEE
T ss_pred HHHHHHHHh-ccccc
Confidence 677777766 56654
|
| >d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Phenylserine aldolase PSALD species: Pseudomonas putida [TaxId: 303]
Probab=99.63 E-value=2.3e-15 Score=188.80 Aligned_cols=314 Identities=14% Similarity=0.142 Sum_probs=203.3
Q ss_pred CCCCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhc
Q psy15216 1400 DATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYK 1479 (2602)
Q Consensus 1400 ~~~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~ 1479 (2602)
++.++..+++++++.++.... ..++...+..+++|+++++++|.+ ..++||+|+|+|++.++.++.
T Consensus 10 ~n~~g~~P~v~~A~~~a~~~~---------~~~~~~~~~~~~l~~~la~~~g~~-~~v~f~~sGt~An~~a~~~~~---- 75 (345)
T d1v72a1 10 DNIAGASPEVAQALVKHSSGQ---------AGPYGTDELTAQVKRKFCEIFERD-VEVFLVPTGTAANALCLSAMT---- 75 (345)
T ss_dssp GGGCCCCHHHHHHHHHTTSSC---------CCSTTCSHHHHHHHHHHHHHHTSC-CEEEEESCHHHHHHHHHHTSC----
T ss_pred CCCCCCCHHHHHHHHHHhccC---------ccccCCCHHHHHHHHHHHHHHCCC-cEEEECCchHHHHHHHHHHHH----
Confidence 334567889999998754321 111223356789999999999975 579999999999999999887
Q ss_pred cCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccCCc------e-EEEEeccccccccccC--
Q psy15216 1480 KRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDT------I-LVSVMLVNNEIGVIQP-- 1550 (2602)
Q Consensus 1480 ~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~~t------~-lv~l~~~~n~tG~~~~-- 1550 (2602)
.+++.+++....|.++...+......+..+..++...++.++++.+++.+.+.+ . .++...+.|+.|...+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (345)
T d1v72a1 76 PPWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGPAAKLDIVRLRERTREKVGDVHTTQPACVSITQATEVGSIYTLD 155 (345)
T ss_dssp CTTEEEEECTTSHHHHSSTTHHHHHTTSCEEEECCCGGGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCTTSCCCCHH
T ss_pred hcCCccccccccceeeechhhHHHhcCcccccccccccccccHHHhhhhhcccccccccccceeeeeeccccccccccch
Confidence 788999999999888777666666667888888777788899999999997542 2 4445555566665544
Q ss_pred -hHHHHHHhhhcCCEEEEecccccCcccccCCC-----C--CccEEEEccccccCCCceEEEEEecCCCCccccccccCC
Q psy15216 1551 -ILEIGELCRSKGVIFHCDAAQAVGKIDINIQN-----Y--KVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGG 1622 (2602)
Q Consensus 1551 -l~~I~~ia~~~gi~vivD~a~~~g~~~~~l~~-----~--~~D~~v~S~~K~~gp~G~G~l~~~~~~~~~l~~~~~g~~ 1622 (2602)
++++.++|++||+++++|++|..+........ . ..+.++.+.+|.+++.+ +..............
T Consensus 156 ~~~~i~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------ 228 (345)
T d1v72a1 156 EIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKNGVLAA-EAIVLFNTSLATEMS------ 228 (345)
T ss_dssp HHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGGTCSSC-EEEEESSGGGHHHHH------
T ss_pred hhhhHHHHHHhcCceeeecccccceeccccccCHHHhhccccccccccCccccccccc-cccccchhhhhhhcc------
Confidence 67788899999999999999875433222111 1 23455555555333332 334433221111000
Q ss_pred ccccCCCCCcchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecCCcHH
Q psy15216 1623 HEYGLRSGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGES 1701 (2602)
Q Consensus 1623 ~~~~~~~gt~~~~~~~al~~aL~-~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~ 1701 (2602)
.......++.+.....+. .+.. ...........+...+..++.+.+.+ .+++.+..+... ++..+.++ ..
T Consensus 229 ~~~~~~~~~~~~~~~aa~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~g~~~~~p~~~---niv~~~~~----~~ 299 (345)
T d1v72a1 229 YRRKRAGHLSSKMRFLSA-QIDAYLTDDLWLRNARKANAAAQRLAQGLEG-LGGVEVLGGTEA---NILFCRLD----SA 299 (345)
T ss_dssp HHHHHTTCCCSSTHHHHH-HHHHHTSTTHHHHHHHHHHHHHHHHHHHHTT-CTTEEEESCCCS---SEEEEEEC----HH
T ss_pred ccccccccccchhhHHhh-hhHHHHHHhhhhhhccchhhHHHHHHHHHHh-cCCcEeccCCCc---cEEEEEcC----HH
Confidence 001111223333333322 2222 22233556667777888888888887 799988765432 34444443 23
Q ss_pred HHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1702 LLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1702 ~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
+...| +|+.+.++. ...+.+||+++.++|+||||+++++|++
T Consensus 300 ~~~~L~~~gi~v~~~~---------------------~~~~~lR~~~~~~~T~edid~~le~lr~ 343 (345)
T d1v72a1 300 MIDALLKAGFGFYHDR---------------------WGPNVVRFVTSFATTAEDVDHLLNQVRL 343 (345)
T ss_dssp HHHHHHHTTCBCBCSS---------------------SSTTEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCccccC---------------------CCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 33344 677664321 1137899999999999999999999986
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Probab=99.63 E-value=4e-15 Score=191.45 Aligned_cols=350 Identities=12% Similarity=0.028 Sum_probs=212.2
Q ss_pred cccHHHHHHHHHhc-CCCccccceeeeeceeeeccC-CCCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHH
Q psy15216 1366 PSKFIEIKNSLEMT-GFKAESSGIVMRPYTNIVFKD-ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKAR 1443 (2602)
Q Consensus 1366 ~~~~~~v~~aL~~~-g~~~~~~ei~~iP~~~v~L~~-~~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr 1443 (2602)
|.....+...+++. .-+..+..++. |.|+ ...+..+.+.++..........+ + .|. ......++|
T Consensus 14 ~~~i~~l~~~~~~d~~~~~Inl~iG~------~~d~~g~~~~~~~V~~a~~~~~~~~~~~-~--~Y~----p~~G~p~lr 80 (412)
T d1ajsa_ 14 PVLVFKLIADFREDPDPRKVNLGVGA------YRTDDCQPWVLPVVRKVEQRIANNSSLN-H--EYL----PILGLAEFR 80 (412)
T ss_dssp CCHHHHHHHHHHTCCCTTCEECCSCC------CCCTTSCCCCCHHHHHHHHHHHTCTTCC-C--CCC----CTTCCHHHH
T ss_pred CChHHHHHHHHhcCCCCCcEEeeCCC------CcCCCCCCCCcHHHHHHHHHHHhCCCcC-C--CCC----CCCCCHHHH
Confidence 44556666777643 22334555552 2222 23355566777655544322111 1 011 123367788
Q ss_pred HHHHHHhCC------CCCc--EEEeCCHHHHHHHHHHhhhh---hhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEe
Q psy15216 1444 NEVAQLIYA------DPRE--IIWTSGATESNNLAIKGAAH---FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYL 1512 (2602)
Q Consensus 1444 ~~ia~~~g~------~~~~--iv~t~gaT~al~~al~~l~~---~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v 1512 (2602)
+++++++.- .+++ ++.|++++.++..+..++.. ..++|||+|++++|.|++|...++.+ |++++.+
T Consensus 81 eaia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pGd~Vlv~~P~y~~y~~~~~~~---G~~~v~~ 157 (412)
T d1ajsa_ 81 TCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTA---GFKDIRS 157 (412)
T ss_dssp HHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHHHT---TCSCEEE
T ss_pred HHHHHHHhccCCcccccccceeecccchhhHHHHHHHHHHHHhhhcCCCCCEEEEeCCcchhhHHHHHHc---CCeEEEe
Confidence 888887721 2333 55677777777776655431 12489999999999999998888776 7765444
Q ss_pred cc---CCCCCcChhHHHhh---ccCCceEEEEeccccccccccC---hHHHHHHhhhcCCEEEEecccccCccc------
Q psy15216 1513 KP---KNNGLITLSQLEEK---ICSDTILVSVMLVNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQAVGKID------ 1577 (2602)
Q Consensus 1513 ~~---~~~~~id~d~l~~~---i~~~t~lv~l~~~~n~tG~~~~---l~~I~~ia~~~gi~vivD~a~~~g~~~------ 1577 (2602)
+. +..+.+|.+.+++. +.++++++++++||||||.+++ +++|+++|++||++++.|++|..-...
T Consensus 158 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~il~~~P~NPTG~v~s~e~~~~i~~la~~~~~~ii~De~Y~~l~~~~~~~~~ 237 (412)
T d1ajsa_ 158 YRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDA 237 (412)
T ss_dssp EECEETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHT
T ss_pred ecccccccccccHHHHHHHHHhccCCcEEEEecCCCCCcCCCCCHHHHHHHHHHHhhCCEEEEecHhhhhhhcCCcccch
Confidence 32 22345787777665 4678999999999999999999 889999999999999999998532110
Q ss_pred ----ccCCCCCccEEEEccccccCCCc--eEEEEEecCCCCccccccccCCccccCCCCCcchhHHHHHHHHHH------
Q psy15216 1578 ----INIQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFR------ 1645 (2602)
Q Consensus 1578 ----~~l~~~~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~------ 1645 (2602)
.........+++.|++|.++++| +||++++....+.+................+++..+..++...+.
T Consensus 238 ~~~~~~~~~~~~~~~~~s~sk~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (412)
T d1ajsa_ 238 WAIRYFVSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFH 317 (412)
T ss_dssp HHHHHHHHTTCCEEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHH
T ss_pred hhhhhhhhhcccccccccccccccCCCCCccccccchhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhcCHHHHH
Confidence 00112234577789999777777 899999977654433211000000111223445455554444443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCc--EEEeCCCCCCCCceEEEEEecCCcHHHHHhc--CCEEEccccccCCCC
Q psy15216 1646 LARIEMKEELKRILFLQKRLYNGLMESIEE--IYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDIAVSSGSACTSAS 1721 (2602)
Q Consensus 1646 ~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g--l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~v~~g~~~~~~~ 1721 (2602)
.....++..++++.++++.+.+.|.+..+. +.... +....|.+.+.+.+.+...+ +||.+.+|
T Consensus 318 ~~~~~~~~~~~~l~~~r~~l~~~L~~~~~~~~~~~i~------~~~G~F~~~~ls~~~v~~L~~e~gV~~vpg------- 384 (412)
T d1ajsa_ 318 EWTGNVKTMADRILSMRSELRARLEALKTPGTWNHIT------DQIGMFSFTGLNPKQVEYLINQKHIYLLPS------- 384 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHH------HCCSSEEECCCCHHHHHHHHHTTCEECCTT-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeeeec------CCCeEEEecCCCHHHHHHHHHhCCEEEeCC-------
Confidence 223346677888888899999999872111 11111 11223455555544433322 68876533
Q ss_pred CChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1722 LEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1722 ~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
.||++.. .++++|++++++|+++
T Consensus 385 --------------------~Ri~~ag-~~~~~i~~~a~aI~~a 407 (412)
T d1ajsa_ 385 --------------------GRINMCG-LTTKNLDYVATSIHEA 407 (412)
T ss_dssp --------------------SEEEGGG-CCTTTHHHHHHHHHHH
T ss_pred --------------------CeEEecc-CCHHHHHHHHHHHHHH
Confidence 2888754 3568899999999874
|
| >d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=99.63 E-value=3.5e-15 Score=183.90 Aligned_cols=330 Identities=16% Similarity=0.156 Sum_probs=232.0
Q ss_pred CCCCHHHHHHHHHHHhhcc--CCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCc--EEEe-CCHHHHHHHHHHhhhhh
Q psy15216 1403 TPIDPRVVDKMIPYLRVQF--GNPASRNHIYGWTAEKAIEKARNEVAQLIYADPRE--IIWT-SGATESNNLAIKGAAHF 1477 (2602)
Q Consensus 1403 ~~~~~~v~eal~~~l~~~~--~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~--iv~t-~gaT~al~~al~~l~~~ 1477 (2602)
.-.++.+++++...+.+.+ ++|+...|.......++...+.++..++||++++. +-+. .|++.|+..++.+++
T Consensus 41 N~~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~~~~~~~~anVqp~SGs~An~av~~all-- 118 (470)
T d1rv3a_ 41 NFASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALV-- 118 (470)
T ss_dssp CCCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHT--
T ss_pred CcCCHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHHHHHHHHhCCChhhccccccccCCccHHHHHHHHhc--
Confidence 3567789999998887754 67887666666666677777788899999987543 3333 488999999999998
Q ss_pred hccCCCEEEEcCCCCcchHHHHHH-------HHhCCcEEEEeccCC-CCCcChhHHHhhcc-CCceEEEEeccccccccc
Q psy15216 1478 YKKRGKHIITVQTEHKSVLDSIRK-------LENDGFRVTYLKPKN-NGLITLSQLEEKIC-SDTILVSVMLVNNEIGVI 1548 (2602)
Q Consensus 1478 ~~~~gd~Vlv~~~~~~s~~~~~~~-------~~~~G~~v~~v~~~~-~~~id~d~l~~~i~-~~t~lv~l~~~~n~tG~~ 1548 (2602)
+|||.|+..++.+.++...... ......+....++++ ++.+|++++++... .++++|++-.-. .-..
T Consensus 119 --~pgD~im~~~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~v~~~~~~IDyd~l~~~a~~~kPklIi~G~S~--y~r~ 194 (470)
T d1rv3a_ 119 --EPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIAGTSC--YSRN 194 (470)
T ss_dssp --CTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEEECCSS--CCSC
T ss_pred --CCCCeEeeeccccCCcccccccccCCCcccccceeEeeEEEEecccCcccHHHHHHHHHhhCcceEeechhh--cccc
Confidence 9999999988776665432110 001124677777776 47899999999886 478888775443 3456
Q ss_pred cChHHHHHHhhhcCCEEEEecccccCc-----ccccCCCCCccEEEEcccc-ccCCCceEEEEEecCCC-----------
Q psy15216 1549 QPILEIGELCRSKGVIFHCDAAQAVGK-----IDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPR----------- 1611 (2602)
Q Consensus 1549 ~~l~~I~~ia~~~gi~vivD~a~~~g~-----~~~~l~~~~~D~~v~S~~K-~~gp~G~G~l~~~~~~~----------- 1611 (2602)
+|++++.++|++.|+++++|.+|..|. .+-++. .+|++++|+|| +.||+| |+++.+++.-
T Consensus 195 ~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sPl~--~aDvvt~tTHKtlrGPrg-GiI~~~~~~~~~~~~~~~~~~ 271 (470)
T d1rv3a_ 195 LDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFE--HCHVVTTTTHKTLRGCRA-GMIFYRRGVRSVDPKTGKEIL 271 (470)
T ss_dssp CCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGG--TCSEEEEESSGGGCCCSC-EEEEEECSBCC-------CCB
T ss_pred CCHHHHHHHHhccCCeEEecchhhhhhccccccCChhh--eeeeeeeehhhhccCCcc-eEEEEccccccccccccchhH
Confidence 689999999999999999999997654 333443 36999999999 789998 9999887521
Q ss_pred ----CccccccccCCccccCCCCCcchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCC
Q psy15216 1612 ----TRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRL-ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRI 1686 (2602)
Q Consensus 1612 ----~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~-~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~ 1686 (2602)
+++....+.+ ..|.|..+.++|++.++.. ....+..+.++...+++.|.+.|.+ .|+.+..... -
T Consensus 272 ~~~~~~i~~avFPg------~qggph~~~IAa~Ava~~ea~~~~fk~Ya~qvv~NAk~La~~L~~--~G~~v~~ggT--d 341 (470)
T d1rv3a_ 272 YNLESLINSAVFPG------LQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVE--LGYKIVTGGS--D 341 (470)
T ss_dssp CCHHHHHHHHHTTT------TCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH--TTCEEGGGSC--S
T ss_pred HHHHHHHhhhcCcc------ccccchhhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHh--CCceeccCCC--C
Confidence 1122222222 2367888999999999884 3456789999999999999999998 6888864222 2
Q ss_pred CceEEEEEe--cCCcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCC----CCCHHHHHHH
Q psy15216 1687 PHNLNISFN--FIEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGR----FTTEKEIDFT 1758 (2602)
Q Consensus 1687 ~~~~~~~~~--~~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~----~~t~edid~l 1758 (2602)
.++..+.+. +.++......| .||.+..-..+..+ .....+.|||+... ...++|+.++
T Consensus 342 nHlvlvdl~~~g~~g~~ae~~Le~~gI~~Nkn~iP~D~--------------~~~~~sGiRiGT~alTtrG~~e~dm~~i 407 (470)
T d1rv3a_ 342 NHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDK--------------SALRPSGLRLGTPALTSRGLLEKDFQKV 407 (470)
T ss_dssp SSEEEEEGGGGTCCHHHHHHHHHHTTEECEEECCSSCS--------------CTTSCCEEEEECHHHHHTTCCHHHHHHH
T ss_pred CceEEEeecccCCcHHHHHHHHHHcCcEECCCcCCCCC--------------CCCCCCeeEecCHHHHhCCCCHHHHHHH
Confidence 344444443 23454444445 68876643322211 01123789998543 4578999999
Q ss_pred HHHHHHh
Q psy15216 1759 IKLLKMK 1765 (2602)
Q Consensus 1759 i~~L~~~ 1765 (2602)
.+.|.+.
T Consensus 408 A~~I~~~ 414 (470)
T d1rv3a_ 408 AHFIHRG 414 (470)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9888764
|
| >d2bt6a1 d.15.4.1 (A:5-108) Adrenodoxin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: 2Fe-2S ferredoxin-like family: 2Fe-2S ferredoxin-related domain: Adrenodoxin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.63 E-value=2.8e-17 Score=163.77 Aligned_cols=72 Identities=38% Similarity=0.693 Sum_probs=67.4
Q ss_pred cccccCCCchHHHHHhhcCcccc--cccccccccCCceEEEcCCC-CcCCCCCHHHHHHhcccCCCCCCCccCCC
Q psy15216 2531 AIFNENSGISLCDALLKNSIFIE--HACEKSCACATCHVIIREGF-NEINKANEVEEDMLNKAWGLEENSRLSCQ 2602 (2602)
Q Consensus 2531 ~~ve~~~g~~~~~~~~~~~~~~~--~~c~g~~~c~tch~~~~~~~-~~~~~~~~~e~~~l~~~~~~~~~srl~cq 2602 (2602)
++++++.|.+||+++++|+++|. +.|||+|+|+||||||.++| +.+++++++|++||+.+.+++++||||||
T Consensus 15 ~~i~~~~G~tLl~~~~~~gi~i~~~~~CgG~~~C~tC~V~v~~~~~~~l~~~~~~E~~~L~~~~~~~~~sRLaCQ 89 (104)
T d2bt6a1 15 LTTKGKIGDSLLDVVVQNNLDIDGFGACEGTLACSTCHLIFEQHIFEKLEAITDEENDMLDLAYGLTDRSRLGCQ 89 (104)
T ss_dssp EEEEEETTCBHHHHHHHTTCCCTTTTTTSSSSSBSTTEEECCHHHHTTSCCCCHHHHHHHTTCTTCCTTEEEGGG
T ss_pred EEEEeCCCchHHHHHHHcCCCcccccccCCccccceEEEEecccchhhcCCCCHHHHHHhhccCCCCcCeEEeee
Confidence 57888899999999999999765 56999999999999999998 99999999999999999999999999999
|
| >d1xlqa1 d.15.4.1 (A:1-106) 2Fe-2S ferredoxin {Pseudomonas putida, putidaredoxin [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: 2Fe-2S ferredoxin-like family: 2Fe-2S ferredoxin-related domain: 2Fe-2S ferredoxin species: Pseudomonas putida, putidaredoxin [TaxId: 303]
Probab=99.63 E-value=7.1e-17 Score=161.47 Aligned_cols=72 Identities=42% Similarity=0.693 Sum_probs=67.5
Q ss_pred cccccCCCchHHHHHhhcCcc-cccccccccccCCceEEEcCCC-CcCCCCCHHHHHHhcc-cCCCCCCCccCCC
Q psy15216 2531 AIFNENSGISLCDALLKNSIF-IEHACEKSCACATCHVIIREGF-NEINKANEVEEDMLNK-AWGLEENSRLSCQ 2602 (2602)
Q Consensus 2531 ~~ve~~~g~~~~~~~~~~~~~-~~~~c~g~~~c~tch~~~~~~~-~~~~~~~~~e~~~l~~-~~~~~~~srl~cq 2602 (2602)
++++++.|.|||+++++||++ |.+.|||.++|+||||||.++| +.+++++++|.+||+. ..+++++||||||
T Consensus 13 ~~i~~~~G~tLl~aa~~~gi~~i~~~CgG~~~C~tC~V~v~~g~~~~l~~~~~~E~~~L~~~~~~~~~~sRLaCQ 87 (106)
T d1xlqa1 13 RELDVADGVSLMQAAVSNGIYDIVGDCGGSASCATCHVYVNEAFTDKVPAANEREIGMLESVTAELKPNSRLCCQ 87 (106)
T ss_dssp EEEECCTTCBHHHHHHHTTCTTSCCTTCSSSSSCTTEEEECTTTGGGSCCCCHHHHHHHTTCSSCCCTTEEEGGG
T ss_pred EEEEeCCCChHHHHHHHhCcCCchhhhhhccccccceEEecccchhcCCCCCHHHHHHHHhhhccCCCCcEeeee
Confidence 678899999999999999995 9999999999999999999998 8999999999999986 4567899999999
|
| >d1b9ra_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Pseudomonas sp., terpredoxin [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: 2Fe-2S ferredoxin-like family: 2Fe-2S ferredoxin-related domain: 2Fe-2S ferredoxin species: Pseudomonas sp., terpredoxin [TaxId: 306]
Probab=99.62 E-value=3.6e-17 Score=163.11 Aligned_cols=72 Identities=32% Similarity=0.592 Sum_probs=68.0
Q ss_pred cccccCCCchHHHHHhhcCcc-cccccccccccCCceEEEcCCC-CcCCCCCHHHHHHhcccC-CCCCCCccCCC
Q psy15216 2531 AIFNENSGISLCDALLKNSIF-IEHACEKSCACATCHVIIREGF-NEINKANEVEEDMLNKAW-GLEENSRLSCQ 2602 (2602)
Q Consensus 2531 ~~ve~~~g~~~~~~~~~~~~~-~~~~c~g~~~c~tch~~~~~~~-~~~~~~~~~e~~~l~~~~-~~~~~srl~cq 2602 (2602)
++++++.|.+||+++++|+++ |.+.|||.++|+||||+|.++| +.|++++++|++||+... +.+++||||||
T Consensus 13 ~~v~~~~G~tLl~aa~~~gi~~i~~~CgG~g~C~tC~V~v~~g~~~~l~~~~~~E~~~l~~~~~~~~~~sRLaCQ 87 (105)
T d1b9ra_ 13 YAVDAQDGQSLMEVATQNGVPGIVAECGGSCVCATCRIEIEDAWVEIVGEANPDENDLLQSTGEPMTAGTRLSCQ 87 (105)
T ss_dssp EEEECCTTCCTTHHHHHHTCCCCCCSSTTSSCCCCCCCEECTTTHHHHTCCCTTHHHHHHTSCCCCCTTBSCGGG
T ss_pred EEEEECCCCcHHHHHHHcCCCCcccccCCCccccceEEEecccccccCCCCCHHHHHHHHhccccCCCCcEeEee
Confidence 789999999999999999996 9999999999999999999998 889999999999998765 57899999999
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Probab=99.62 E-value=1.6e-15 Score=195.13 Aligned_cols=323 Identities=12% Similarity=0.031 Sum_probs=196.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCC------CCCc--EEEeCCHHHHHHH
Q psy15216 2 DYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA------DPRE--IIWTSGATESNNL 73 (2602)
Q Consensus 2 d~a~~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~------~~~~--Iv~t~g~T~al~~ 73 (2602)
|-.+..|.++.|.++..........+ + +|.+.....++|+++++++.- +++. ++.+.+.+.++..
T Consensus 42 d~~g~~~~~~~V~~a~~~~~~~~~~~-----~--~Y~p~~G~p~lreaia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (412)
T d1ajsa_ 42 TDDCQPWVLPVVRKVEQRIANNSSLN-----H--EYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRI 114 (412)
T ss_dssp CTTSCCCCCHHHHHHHHHHHTCTTCC-----C--CCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHH
T ss_pred CCCCCCCCcHHHHHHHHHHHhCCCcC-----C--CCCCCCCCHHHHHHHHHHHhccCCcccccccceeecccchhhHHHH
Confidence 33445567788877765544321111 1 122233456778888877621 2333 5667777766666
Q ss_pred HHHhccc---ccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEecc---CCCCccChHHHHhh---ccCCceEEEEec
Q psy15216 74 AIKGAAH---FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP---KNNGLITLSQLEEK---ICSDTILVSVML 144 (2602)
Q Consensus 74 ~~~~l~~---~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~---~~~~~ld~e~l~~~---i~~~tklv~i~~ 144 (2602)
+..++.. ..++|||+|++++|.|+++...++.+ |++++.++. +..+.+|.+.+++. +.++++++++++
T Consensus 115 ~~~~l~~~~~~~~~pGd~Vlv~~P~y~~y~~~~~~~---G~~~v~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~il~~~ 191 (412)
T d1ajsa_ 115 GAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTA---GFKDIRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHAC 191 (412)
T ss_dssp HHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHHHT---TCSCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEESS
T ss_pred HHHHHHHHhhhcCCCCCEEEEeCCcchhhHHHHHHc---CCeEEEeecccccccccccHHHHHHHHHhccCCcEEEEecC
Confidence 5554421 12489999999999999998888776 766544332 23445788777665 467899999999
Q ss_pred ccCccccccc---HHHHHHHHHhcCCEEEEeccccccccc----------ccCCCCCccEEEeccccccCCCC--cEEEE
Q psy15216 145 VNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQAVGKID----------INIQNYKVDLMSFSAHKIYGPKG--IGALY 209 (2602)
Q Consensus 145 ~~npTG~~~~---l~~I~~la~~~g~~livD~a~a~g~~~----------~dl~~~~~D~~~~S~~K~~Gp~G--~G~l~ 209 (2602)
||||||.+++ +++|+++|++||++++.|++|..-... .........+++.|++|.++.+| +||++
T Consensus 192 P~NPTG~v~s~e~~~~i~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R~G~~~ 271 (412)
T d1ajsa_ 192 AHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNERVGNLT 271 (412)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCEEEEE
T ss_pred CCCCcCCCCCHHHHHHHHHHHhhCCEEEEecHhhhhhhcCCcccchhhhhhhhhhcccccccccccccccCCCCCccccc
Confidence 9999999999 667889999999999999998642210 00111223577889999887777 89999
Q ss_pred EecCCCCcccceecCCCccccccccCcchhHHHHHHHHHH------HHHHhHHHHHHHHHHHHHHHHHHHhhccC-c-eE
Q psy15216 210 IRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFR------LARIEMKEELKRILFLQKRLYNGLMESIE-E-IY 281 (2602)
Q Consensus 210 ~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~------~~~~~~~~~~~~~~~l~~~l~~~L~~~~~-g-~~ 281 (2602)
+.......+................+++..+..++...+. .....++..+++++++++.+.+.|.+..+ + +.
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~l~~~L~~~~~~~~~~ 351 (412)
T d1ajsa_ 272 VVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALKTPGTWN 351 (412)
T ss_dssp EECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCH
T ss_pred cchhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCee
Confidence 9887655443221000000001123444444444434433 12234567777888888888888876211 1 11
Q ss_pred EeCCCCCCCCceEEEEEcccChhHHHHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHH
Q psy15216 282 INGDMNNRIPHNLNISFNFIEGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKE 358 (2602)
Q Consensus 282 l~~~~~~~~~~~~~~~~~~~~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~ed 358 (2602)
.+.++ .+ .|.+.+.+.+ ++..| +||.+.+| .||+++. .++++
T Consensus 352 ~i~~~-----~G-~F~~~~ls~~-~v~~L~~e~gV~~vpg---------------------------~Ri~~ag-~~~~~ 396 (412)
T d1ajsa_ 352 HITDQ-----IG-MFSFTGLNPK-QVEYLINQKHIYLLPS---------------------------GRINMCG-LTTKN 396 (412)
T ss_dssp HHHHC-----CS-SEEECCCCHH-HHHHHHHTTCEECCTT---------------------------SEEEGGG-CCTTT
T ss_pred eecCC-----Ce-EEEecCCCHH-HHHHHHHhCCEEEeCC---------------------------CeEEecc-CCHHH
Confidence 11111 11 2344444443 33444 57765432 2999853 35688
Q ss_pred HHHHHHHHHhh
Q psy15216 359 IDFTIKLLKMK 369 (2602)
Q Consensus 359 id~li~~L~~~ 369 (2602)
|++++++|+++
T Consensus 397 i~~~a~aI~~a 407 (412)
T d1ajsa_ 397 LDYVATSIHEA 407 (412)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999864
|
| >d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL1 [TaxId: 5722]
Probab=99.62 E-value=5.3e-14 Score=174.34 Aligned_cols=311 Identities=16% Similarity=0.153 Sum_probs=212.4
Q ss_pred CcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHH-HHHhCC
Q psy15216 32 NHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIR-KLENDG 110 (2602)
Q Consensus 32 ~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~-~~~~~G 110 (2602)
.+.|++...+....+++.++++-|+. ..+..+|+..|+..++.++. ++||+|++++.-|........ .+.+.|
T Consensus 50 ~~~YsR~~nPT~~~le~~la~LEg~~--~a~~~sSGmaAi~~~~l~l~----~~gd~vv~~~~~yg~t~~~~~~~~~~~g 123 (394)
T d1e5ea_ 50 GYIYTRLGNPTVSNLEGKIAFLEKTE--ACVATSSGMGAIAATVLTIL----KAGDHLISDECLYGCTHALFEHALTKFG 123 (394)
T ss_dssp SCCBTTTCCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHC----CTTCEEEEESCCCHHHHHHHHTHHHHTT
T ss_pred CceecCCCCHHHHHHHHHHHHHhCCc--ceeeeccchHHHHHHHHhhc----ccccccccccceeehhhHhHHHHhhccc
Confidence 35667666778899999999999965 66788888899999998888 899999999999988776665 457889
Q ss_pred cEEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHH-hcCCEEEEecccccccccccCCCCCc
Q psy15216 111 FRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCR-SKGVIFHCDAAQAVGKIDINIQNYKV 189 (2602)
Q Consensus 111 ~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~-~~g~~livD~a~a~g~~~~dl~~~~~ 189 (2602)
+.+.+++.. |++.++++++++|++|++..|.||+..+.|++++++.++ ++|+++++|.+.+.+... +.-++|+
T Consensus 124 i~~~~~d~~-----d~~~~~~~i~~~t~lv~~Etp~NP~l~v~Di~~~~~~~~~~~g~~vvvDnT~atP~~~-~Pl~~Ga 197 (394)
T d1e5ea_ 124 IQVDFINTA-----IPGEVKKHMKPNTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFCSPMIT-NPVDFGV 197 (394)
T ss_dssp CEEEEECTT-----STTHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHTSTTCEEEEECTTTCTTTC-CGGGGTC
T ss_pred eeeeccCCC-----CHHHHHHhhcccccEEEEeccCCcceeeehhhhhhhccccccCeEEEecCcccCcccC-CchhcCC
Confidence 999999854 678999999999999999999999999999999988776 478999999998766542 3335789
Q ss_pred cEEEeccccccCCCC---cEEEEEecCCCCcccceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy15216 190 DLMSFSAHKIYGPKG---IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQ 266 (2602)
Q Consensus 190 D~~~~S~~K~~Gp~G---~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~ 266 (2602)
|+++.|.+|.++..+ .|.++++++.....+.... ++...++++....+-+..+|+- +.-+.++..+++
T Consensus 198 DiVvhS~TKy~~GhsDv~~G~v~~~~~~~~~~~~~~~-----~~~~G~~lsp~~a~ll~rgl~T----L~lRm~r~~~nA 268 (394)
T d1e5ea_ 198 DVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGI-----KDITGSVISPHDAWLITRGLST----LNIRMKAESENA 268 (394)
T ss_dssp SEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCC-----CCCCCCCCCHHHHHHHHHHHTT----HHHHHHHHHHHH
T ss_pred CEEEechhhhcCCCcccccccccchhhHHHHHHHHHH-----HHhhCCCCChHHHHHHHhhchh----HHHHHHHHHHHH
Confidence 999999999776665 6878877654443321110 1223445665555555555553 345555666677
Q ss_pred HHHHHHHhhccCceE-EeCC--CCCC---------CCceEEEEEcccC----hhHHHHHhC--CeEEcccccCC----C-
Q psy15216 267 KRLYNGLMESIEEIY-INGD--MNNR---------IPHNLNISFNFIE----GESLLMAIK--DIAVSSGSACT----S- 323 (2602)
Q Consensus 267 ~~l~~~L~~~~~g~~-l~~~--~~~~---------~~~~~~~~~~~~~----~~~~~~~L~--gI~v~~g~~~~----~- 323 (2602)
..+.+.|++ .|.+. ++-| +++. ...+..++|.... ...+++.|+ .+.++-|...+ +
T Consensus 269 ~~lA~~L~~-hp~V~~V~yPgl~s~p~~~~~~~~~~~~G~~~sf~~~~~~~~a~~f~~~l~l~~~a~SlGg~eSLi~~p~ 347 (394)
T d1e5ea_ 269 MKVAEYLKS-HPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKSGFEGAKKLLDNLKLITLAVSLGGCESLIQHPA 347 (394)
T ss_dssp HHHHHHHHT-CTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETTHHHHHHHHHHTCSSSEESSCCCSSSCEEECGG
T ss_pred HHHHHHHhh-cCCccEEeCCCcccccchhhhhcccccCCCeeeeeccCCHHHHHHHHHhCCccceeeccCCccceeECcc
Confidence 777777766 56653 3322 1111 0113334443222 345666663 33333332211 1
Q ss_pred --C-CCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 324 --A-SLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 324 --~-~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
. ...+......+|+++ +.||+|+|....++-+..+-++|+.
T Consensus 348 ~~th~~~~~~~r~~~Gi~~----~liRlSVGlEd~eDLi~Dl~qAl~~ 391 (394)
T d1e5ea_ 348 SMTHAVVPKEEREAAGITD----GMIRLSVGIEDADELIADFKQGLDA 391 (394)
T ss_dssp GTTTTTSCHHHHHHTTCCT----TEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred ccccccCCHHHHHhcCCCc----CEEEEEeccCCHHHHHHHHHHHHHH
Confidence 0 112344556778874 8999999986666655566555553
|
| >d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: O-acetyl-L-homoserine sulfhydrylase species: Thermus thermophilus [TaxId: 274]
Probab=99.62 E-value=7.4e-14 Score=173.28 Aligned_cols=312 Identities=16% Similarity=0.141 Sum_probs=204.5
Q ss_pred CcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHHHH-HhCC
Q psy15216 32 NHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDG 110 (2602)
Q Consensus 32 ~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~-~~~G 110 (2602)
.+.|++...+..+.++++++.+-|+. ..+.++|+..|+..++.++. ++||+|+++..-|.......... .+.|
T Consensus 49 ~~~YsR~~nPT~~~LE~~la~LE~~~--~a~~~~SGmaAi~~~~~~l~----~~gd~il~~~~~Yg~t~~l~~~~~~~~g 122 (421)
T d2ctza1 49 GNIYSRIMNPTVDVLEKRLAALEGGK--AALATASGHAAQFLALTTLA----QAGDNIVSTPNLYGGTFNQFKVTLKRLG 122 (421)
T ss_dssp GGSCBTTBCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHC----CTTCEEEECSCCCHHHHHHHHTHHHHTT
T ss_pred CceecCCCCHHHHHHHHHHHHHhCCC--eEEEecChHHHHHHHHHhhc----ccccceeecCCcCCchhHHHHHHHhhcc
Confidence 34566666677889999999999964 56788888899999999988 89999999999999988877654 7889
Q ss_pred cEEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHhcCCEEEEeccccc-ccccccCCCCCc
Q psy15216 111 FRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAV-GKIDINIQNYKV 189 (2602)
Q Consensus 111 ~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~~g~~livD~a~a~-g~~~~dl~~~~~ 189 (2602)
+++.+++.. -..+.+++.++++|++|++..|.|||..+.|+++|+++||++|+++++|.+.+. +.. ...-++|+
T Consensus 123 i~~~~~d~~----~~~~~~~~~~~~~t~li~~EtpsNP~l~v~Di~~i~~iA~~~g~~~vvDnT~a~tP~~-~~Pl~~Ga 197 (421)
T d2ctza1 123 IEVRFTSRE----ERPEEFLALTDEKTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGMGGYL-LRPLAWGA 197 (421)
T ss_dssp CEEEECCTT----CCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGGGGTS-CCGGGGTC
T ss_pred ccceecccc----cCcchhccccCCCceEEEEcCCCcceeEecchHHHHHHHHhcCCceEeccccccccee-ccccccCC
Confidence 999998643 135677788899999999999999999999999999999999999999999873 433 22334789
Q ss_pred cEEEeccccccCCCC---cEEEEEecCCCC-cccc--------eecCCCcc----------------ccccccCcchhHH
Q psy15216 190 DLMSFSAHKIYGPKG---IGALYIRRNPRT-RIEA--------QIHGGGHE----------------YGLRSGTLATHQI 241 (2602)
Q Consensus 190 D~~~~S~~K~~Gp~G---~G~l~~~~~~~~-~l~~--------~~~g~~~~----------------~~~~~gt~~~~~~ 241 (2602)
|+++.|.+|.+|..| .|.++.+++... ..+. .+.+-... .+...+.+++...
T Consensus 198 DiVvhS~TKyl~GHsD~l~G~vv~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~sP~~a 277 (421)
T d2ctza1 198 ALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARVDGLRDQGQALGPFEA 277 (421)
T ss_dssp SEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHH
T ss_pred cEEEEechhhccCCCCeEEEEEEcCCcchhhhcccccccCCchhhhhhHHHHHhccHHHHHHHHHHHHHhccCCCCHHHH
Confidence 999999999777666 677777765332 1110 00000000 0001233444444
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceE-EeCCC--CC----------CCCceEEEEEccc----Chh
Q psy15216 242 VGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIY-INGDM--NN----------RIPHNLNISFNFI----EGE 304 (2602)
Q Consensus 242 ~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~-l~~~~--~~----------~~~~~~~~~~~~~----~~~ 304 (2602)
+-+..+|+- +.-+.++..+++..+.+.|++ .|.+. ++-|. ++ ....+..++|... ...
T Consensus 278 ~l~~rgl~T----L~lRm~~~~~nA~~vA~~L~~-hp~V~~V~yPgL~s~p~~~~a~~~~~g~~G~~~sf~l~~~~~~a~ 352 (421)
T d2ctza1 278 WVVLLGMET----LSLRAERHVENTLHLAHWLLE-QPQVAWVNYPGLPHHPHHDRAQKYFKGKPGAVLTFGLKGGYEAAK 352 (421)
T ss_dssp HHHHHHHTT----HHHHHHHHHHHHHHHHHHHHT-CTTEEEEECTTSTTCTTHHHHHHHHTTCCCSEEEEEETTHHHHHH
T ss_pred HHHhcCCcc----hhhHHHHHHHHHHHHHhhhcc-CCCeeEEecCCcCCCccHHHHHHhcCCCCceEEEEEecCCHHHHH
Confidence 444344442 455566667777777777776 56663 33221 11 0112334444432 134
Q ss_pred HHHHHhC--CeEEcccccCC----CC----CCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHH
Q psy15216 305 SLLMAIK--DIAVSSGSACT----SA----SLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK 367 (2602)
Q Consensus 305 ~~~~~L~--gI~v~~g~~~~----~~----~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~ 367 (2602)
.+++.|+ .+.++-|...+ |. ...+.......|+++ +.||+|+|..+ .+.+++-|+
T Consensus 353 ~f~~~L~l~~~a~SlGg~eSLi~~pa~~th~~~~~e~r~~~GI~~----~liRlSvGlEd----~eDLi~DL~ 417 (421)
T d2ctza1 353 RFISRLKLISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSP----EMVRLSVGLEH----VEDLKAELK 417 (421)
T ss_dssp HHHHTCSSSEECSCCCCSSCEEECGGGTTTTTSCHHHHHHHTCCT----TEEEEECCSSC----HHHHHHHHH
T ss_pred HHHHcCCcCeeccccccccceeeCcccccchhCCHHHHHhcCCCc----CeEEEEeccCC----HHHHHHHHH
Confidence 5666663 33333332211 10 112334455678764 88999999744 444555444
|
| >d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Leishmania major [TaxId: 5664]
Probab=99.61 E-value=4e-15 Score=185.35 Aligned_cols=311 Identities=17% Similarity=0.168 Sum_probs=186.9
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCC
Q psy15216 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK 87 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd 87 (2602)
+++|.|++|+.+..... ..++...+..+++|+++|+++|+++++|+||+|+|+|++.++.++. .+++
T Consensus 11 g~~P~v~eAl~~~~~~~---------~~~y~~~~~~~~lr~~ia~~~g~~~~~v~~tsggtean~~a~~~~~----~~~~ 77 (340)
T d1svva_ 11 GMHPKILDLMARDNMTQ---------HAGYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLAL----RPWE 77 (340)
T ss_dssp CCCHHHHHHHHHHTTCC---------CCSTTCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHHC----CTTE
T ss_pred CCCHHHHHHHHHHhhcC---------CCCCCCCHHHHHHHHHHHHHhCCCcceEEEcCCHHHHHHHHHHHHh----hhcc
Confidence 45789999998865421 1122234567899999999999998899999999999999999888 8999
Q ss_pred EEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhcc------CCceEEEEecccCccccccc---HHHH
Q psy15216 88 HIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKIC------SDTILVSVMLVNNEIGVIQP---ILEI 158 (2602)
Q Consensus 88 ~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~------~~tklv~i~~~~npTG~~~~---l~~I 158 (2602)
.+++....|.++.................+ .. ...+.+....+.. ..+..+++++..|.+|.+.+ +..+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (340)
T d1svva_ 78 AVIATQLGHISTHETGAIEATGHKVVTAPC-PD-GKLRVADIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQELEDI 155 (340)
T ss_dssp EEEEETTSHHHHSSTTHHHHTTCCEEEECC-TT-SCCCHHHHHHHHHHSCSTTSCEEEEEEEESSCTTSCCCCHHHHHHH
T ss_pred ccccccccceeeeecccccccceeeeeccc-cc-ccccchhHHHHhhhhhcccCCcceeeeecccccccccccHHHhhhh
Confidence 999999998887655555433333333333 22 2223333322221 12334444444455666655 5556
Q ss_pred HHHHHhcCCEEEEecccccccccccCCCCC-------ccEEEeccccccCCCCcEEEEEecCCCCcccceecCCCccccc
Q psy15216 159 GELCRSKGVIFHCDAAQAVGKIDINIQNYK-------VDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGL 231 (2602)
Q Consensus 159 ~~la~~~g~~livD~a~a~g~~~~dl~~~~-------~D~~~~S~~K~~Gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~ 231 (2602)
.+.|+++|.++++|+++..+..+.+..... .+....+.+|..+..+.++............+.. ..
T Consensus 156 ~~~~~~~g~~~~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~ 228 (340)
T d1svva_ 156 SASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAGGMFGEALIILNDALKPNARHLI-------KQ 228 (340)
T ss_dssp HHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTTCSSCEEEEECSGGGCTTHHHHH-------HH
T ss_pred hcccccccceeeeeccceeeeecccccccccccccccceeeecCCccccccccccccccchhhhhhhhhhc-------cc
Confidence 788899999999999987655544333221 3455556666544444444444333333222211 11
Q ss_pred cccCcchhHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcccChhHHHHHh
Q psy15216 232 RSGTLATHQIVGMGEAFRLAR-IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI 310 (2602)
Q Consensus 232 ~~gt~~~~~~~al~~al~~~~-~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L 310 (2602)
..++.+.....+ .+++.... .......++...++.++.+.+.. +|+++..|... +++++.++. .....|
T Consensus 229 ~~~~~~~~~~~~-aa~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~g~~~~~p~~~---~~v~~~~~~----~~~~~l 298 (340)
T d1svva_ 229 RGALMAKGWLLG-IQFEVLMKDNLFFELGAHSNKMAAILKAGLEA--CGIRLAWPSAS---NQLFPILEN----TMIAEL 298 (340)
T ss_dssp TTCCCTTTHHHH-HHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHH--TTCCBSSCCSS---SEECBEEEH----HHHHHH
T ss_pred ccCccchhhHHH-HHHHHHhhhhHHHHHHHHHHHHHhhhHHHHhc--CCCeeecCCCc---eEEEEeCCH----HHHHHH
Confidence 122333322222 23333222 23566777888888899999977 68887765432 333333333 233333
Q ss_pred -CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 311 -KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 311 -~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
+...+ .+....+ ..++.||+|+++++|++|||+++++|++
T Consensus 299 ~~~~~~-~~~~~~~-----------------~~~~~vR~s~~~~~t~edid~~l~~l~~ 339 (340)
T d1svva_ 299 NNDFDM-YTVEPLK-----------------DGTCIMRLCTSWATEEKECHRFVEVLKR 339 (340)
T ss_dssp TTTEEC-EEEEEET-----------------TTEEEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred HHhhhh-hcccccC-----------------CCCcEEEEECCCCCCHHHHHHHHHHHhc
Confidence 21111 1111111 1137899999999999999999999986
|
| >d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL2 [TaxId: 5722]
Probab=99.61 E-value=1.3e-14 Score=176.30 Aligned_cols=298 Identities=16% Similarity=0.136 Sum_probs=198.5
Q ss_pred HHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHHH-HHhCCcEEEEeccCCCCc
Q psy15216 45 KARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDGFRVTYLKPKNNGL 123 (2602)
Q Consensus 45 ~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~-~~~~G~~v~~v~~~~~~~ 123 (2602)
.+++.+|++.|.. ..+.++|+..|+..++.++. ++||+|+++..-|.......+. +.+.|+++.+++..
T Consensus 2 aLE~~la~Leg~~--~a~~~sSGMaAi~~~l~~ll----~~Gd~iv~~~~~Yg~t~~~~~~~l~~~gi~~~~~d~~---- 71 (331)
T d1pffa_ 2 ALEGKIAKLEHAE--ACAATASGMGAIAASVWTFL----KAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDMA---- 71 (331)
T ss_dssp HHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHC----CTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT----
T ss_pred HHHHHHHHHhCCC--eEEEECCHHHHHHHHHHHHh----CCCCEEEEeCCCchHHHHHHHHHHHhcCeEEEEeccc----
Confidence 3678899999864 67788899999999998887 8999999999999888777754 47889999999754
Q ss_pred cChHHHHhhccCCceEEEEecccCcccccccHHHHHHHH-HhcCCEEEEecccccccccccCCCCCccEEEeccccccCC
Q psy15216 124 ITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELC-RSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGP 202 (2602)
Q Consensus 124 ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la-~~~g~~livD~a~a~g~~~~dl~~~~~D~~~~S~~K~~Gp 202 (2602)
|++.++++++++|++|++..|.||+..+.|++.+++++ |++|+++++|.+.+.+... +.-++|+|+++.|.+|.++.
T Consensus 72 -d~~~~~~~i~~~t~~i~~Es~~np~~~v~d~~~~~~~~a~~~~~~~vVDnT~atp~~~-~pl~~GaDiVv~S~TKy~~G 149 (331)
T d1pffa_ 72 -VPGNIEKHLKPNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILT-NPLDLGVDIVVHSATKYING 149 (331)
T ss_dssp -STTHHHHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHHC-CGGGGTCSEEEEETTTTTSS
T ss_pred -chhhHhhhcccccceeeeecccccccccccchhhhhhhhcccCceEEeeccccccccc-cccccCCCEEEecchhhcCC
Confidence 78999999999999999999999999999999999885 6789999999998765432 23346899999999997765
Q ss_pred CC---cEEEEEecCCCCcccceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCc
Q psy15216 203 KG---IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEE 279 (2602)
Q Consensus 203 ~G---~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g 279 (2602)
.| .|.++.+++.......... +......++....+.+..+++-+. .+.++..+++..+.+.|++ .|.
T Consensus 150 h~d~~~G~v~~~~~~~~~~~~~~~-----~~~~G~~l~p~~a~ll~rgl~Tl~----~Rm~~~~~nA~~lA~~L~~-hp~ 219 (331)
T d1pffa_ 150 HTDVVAGLVCSRADIIAKVKSQGI-----KDITGAIISPHDAWLITRGTLTLD----MRVKRAAENAQKVAEFLHE-HKA 219 (331)
T ss_dssp SSSCCCEEEEECHHHHHHHHHTCC-----CCCCCCCCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH-CTT
T ss_pred CCccccccccccccchhhhhhhhh-----hhccCCCCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhh-CCc
Confidence 55 6788877654332211100 111233455555555556666443 4444555555555666655 444
Q ss_pred e-EEeCC--CCC-----------CCCceEEEEEcc-cChhHHHHHhC--CeEEcccccCCCC-------C-CChHHHHHH
Q psy15216 280 I-YINGD--MNN-----------RIPHNLNISFNF-IEGESLLMAIK--DIAVSSGSACTSA-------S-LEPSYVLRA 334 (2602)
Q Consensus 280 ~-~l~~~--~~~-----------~~~~~~~~~~~~-~~~~~~~~~L~--gI~v~~g~~~~~~-------~-~~~~~~~~~ 334 (2602)
+ +++-| +++ .....+.|.+.+ ....++++.|+ ++.++-|...+-- | ..+......
T Consensus 220 V~~V~yPgl~s~p~~~~~~~~~~~~g~l~sf~l~~~~~~~~f~d~l~lf~~~~SlG~~~SLi~~p~~~~h~~~~~e~~~~ 299 (331)
T d1pffa_ 220 VKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVDGLEKAKKVLDNCHVVSLAVSLGGPESLIQHPASMTHAGVPKEEREA 299 (331)
T ss_dssp CCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECSSHHHHHHHHHTCSSSEECSSCCSSSCEEECHHHHTSTTSCHHHHHH
T ss_pred EEeeccccccCccHHHHHhhcccccCcccceeeccHHHHHHHHHhCCcceecccCCCCceeEeCccccccccCCHHHHHh
Confidence 4 22211 111 112233444432 12345666664 3334444322210 0 112334456
Q ss_pred cCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 335 LGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 335 ~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
.|+++ +.||+|+|..+.++=++.+-++|+.
T Consensus 300 ~Gi~~----~liRlsvGlE~~~DLi~Dl~~AL~~ 329 (331)
T d1pffa_ 300 AGLTD----NLIRLSVGCENVQDIIDDLKQALDL 329 (331)
T ss_dssp TTCCT----TEEEEECCSSCHHHHHHHHHHHHHT
T ss_pred cCCCc----CeEEEEeeeCCHHHHHHHHHHHHHH
Confidence 77764 7899999987766666666666664
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Probab=99.61 E-value=4.8e-16 Score=199.10 Aligned_cols=318 Identities=12% Similarity=0.050 Sum_probs=194.1
Q ss_pred CCCCCCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCC------CCCcEEEeCCHHHH----HH
Q psy15216 3 YSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA------DPREIIWTSGATES----NN 72 (2602)
Q Consensus 3 ~a~~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~------~~~~Iv~t~g~T~a----l~ 72 (2602)
..+.+|.++.|.+|....... +.. . .+|.+.....++|+++++++.- ++++++.+.+++.+ +.
T Consensus 39 ~~g~~p~~~~V~~A~~~l~~~----~~~-~--~~Y~p~~G~~~lR~aia~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~ 111 (397)
T d3tata_ 39 EDGIIPQLQAVAEAEARLNAQ----PHG-A--SLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVG 111 (397)
T ss_dssp TTSSCCCCHHHHHHHHHHTTS----CCS-S--BCCCCTTCCHHHHHHHHHHHTCSSCHHHHTTCEEECCBSHHHHHHHHH
T ss_pred CCCCCCCcHHHHHHHHHHHhC----ccc-C--CCCCCcccCHHHHHHHHHHHhhccCCcCCcCcEEEecCchhHHHHHHH
Confidence 344456677888876544321 111 1 1222334567788999888742 45677777666654 44
Q ss_pred HHHHhcccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCC--CCccChHHHHhhc---cCCceEEEEecccC
Q psy15216 73 LAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEKI---CSDTILVSVMLVNN 147 (2602)
Q Consensus 73 ~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~ld~e~l~~~i---~~~tklv~i~~~~n 147 (2602)
+++..+. .|||+|++++|.|+++....+.+ |++++.+++.. .+..|.+.+.+.+ .++++++++++|||
T Consensus 112 ~~~~~~~----~pgd~Vlv~~P~y~~y~~~~~~~---G~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~N 184 (397)
T d3tata_ 112 ADFLKRY----FPESGVWVSDPTWENHVAIFAGA---GFEVSTYPWYDEATNGVRFNDLLATLKTLPARSIVLLHPCCHN 184 (397)
T ss_dssp HHHHHHH----CSSCCCEECSSCCTTHHHHHHTT---TCCCEECCCCCTTTSSCCHHHHHHHHTTCCSSCCCEECSSSCS
T ss_pred HHHhhhc----CCCCcceecccCccccHHHHHHc---CCEEEEEecchhhccccchHHHHHHhhhcccccEEEEecCCCC
Confidence 4444444 89999999999999998887766 99999999865 3457887777765 36788999999999
Q ss_pred ccccccc---HHHHHHHHHhcCCEEEEeccccccccc-------c--cCCCCCccEEEeccccccCCCC--cEEEEEecC
Q psy15216 148 EIGVIQP---ILEIGELCRSKGVIFHCDAAQAVGKID-------I--NIQNYKVDLMSFSAHKIYGPKG--IGALYIRRN 213 (2602)
Q Consensus 148 pTG~~~~---l~~I~~la~~~g~~livD~a~a~g~~~-------~--dl~~~~~D~~~~S~~K~~Gp~G--~G~l~~~~~ 213 (2602)
|||.+++ +++|+++|++|+++++.|++|..-... . .......-+++.|++|.++++| +||++++..
T Consensus 185 PTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~~~~~~~ 264 (397)
T d3tata_ 185 PTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYGERVGGLSVMCE 264 (397)
T ss_dssp SSCCCCCHHHHHHHHHHHHHTTCCCEECBSCTTSSSCHHHHHHHHHHHHTTTCCCEECBCCHHHHTBTTTCCBCCEEECS
T ss_pred CCCeeCCHHHHHHHHHHHhhcCeeEEeehhhhhhccCCcccchhhhhhhhcCCceEEEecCcccccccCccccccccchh
Confidence 9999998 556888899999999999998642211 0 0111122477789999888877 899999988
Q ss_pred CCCcccceecCCCccccccccCcchhHHHHHHHHHH---H---HHHhHHHHHHHHHHHHHHHHHHHhhccCc--eEEeCC
Q psy15216 214 PRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFR---L---ARIEMKEELKRILFLQKRLYNGLMESIEE--IYINGD 285 (2602)
Q Consensus 214 ~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~---~---~~~~~~~~~~~~~~l~~~l~~~L~~~~~g--~~l~~~ 285 (2602)
..+..................+++.....++...+. + .....+..++++.++++.+.+.|....+. +....+
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~ 344 (397)
T d3tata_ 265 DAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLAEVEEMRTRILAMRQELVKVLSTEMPERNFDYLLN 344 (397)
T ss_dssp STTHHHHHHHHHHHHTTTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCTTSCTTHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccccccHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEcC
Confidence 776544321000000001112233333333333333 1 11234455566666666777766552222 111111
Q ss_pred CCCCCCceEEEEEcccChhHHHHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHH
Q psy15216 286 MNNRIPHNLNISFNFIEGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFT 362 (2602)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~l 362 (2602)
.. +.++++ .. +.++++.| ++|.+.+| .|||++. .++++|+++
T Consensus 345 ~~-----G~F~~~-~l-s~e~~~~L~~e~~V~l~~g---------------------------~Ri~~a~-~~~~~i~~~ 389 (397)
T d3tata_ 345 QR-----GMFSYT-GL-SAAQVDRLREEFGVYLIAS---------------------------GRMCVAG-LNTANVQRV 389 (397)
T ss_dssp CC-----SSBCCC-CC-CHHHHHHHTTTTCEECCSS---------------------------SCCBTTS-CCTTTHHHH
T ss_pred CC-----ceEEec-Cc-CHHHHHHHHHhCCEEeCCC---------------------------CEEEecc-CCHHHHHHH
Confidence 11 111222 22 23455555 46655422 3888854 467889999
Q ss_pred HHHHHhh
Q psy15216 363 IKLLKMK 369 (2602)
Q Consensus 363 i~~L~~~ 369 (2602)
+++|+++
T Consensus 390 ~~ai~~v 396 (397)
T d3tata_ 390 AKAFAAV 396 (397)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999864
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Probab=99.61 E-value=4.4e-16 Score=199.47 Aligned_cols=318 Identities=12% Similarity=0.063 Sum_probs=196.0
Q ss_pred CCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCC------CCCcEEEeCCHHHHHHHHHHhhhh
Q psy15216 1403 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYA------DPREIIWTSGATESNNLAIKGAAH 1476 (2602)
Q Consensus 1403 ~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~------~~~~iv~t~gaT~al~~al~~l~~ 1476 (2602)
.+.++.+.++........... + +|.+.....++|+++++++.- ++++++.+.+++.+...++..+..
T Consensus 43 ~p~~~~V~~A~~~l~~~~~~~-----~--~Y~p~~G~~~lR~aia~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~ 115 (397)
T d3tata_ 43 IPQLQAVAEAEARLNAQPHGA-----S--LYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFL 115 (397)
T ss_dssp CCCCHHHHHHHHHHTTSCCSS-----B--CCCCTTCCHHHHHHHHHHHTCSSCHHHHTTCEEECCBSHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhCcccC-----C--CCCCcccCHHHHHHHHHHHhhccCCcCCcCcEEEecCchhHHHHHHHHHHh
Confidence 355677777765544321110 1 111223467889999998742 456777777666554333333322
Q ss_pred hhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCC--CCcChhHHHhhc---cCCceEEEEeccccccccccC-
Q psy15216 1477 FYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNN--GLITLSQLEEKI---CSDTILVSVMLVNNEIGVIQP- 1550 (2602)
Q Consensus 1477 ~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~--~~id~d~l~~~i---~~~t~lv~l~~~~n~tG~~~~- 1550 (2602)
..++|||+|++++|.|+++....+.+ |++++.++...+ +.+|.+.+.+.+ .++++++++++||||||.+++
T Consensus 116 ~~~~pgd~Vlv~~P~y~~y~~~~~~~---G~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~NPTG~~~s~ 192 (397)
T d3tata_ 116 KRYFPESGVWVSDPTWENHVAIFAGA---GFEVSTYPWYDEATNGVRFNDLLATLKTLPARSIVLLHPCCHNPTGADLTN 192 (397)
T ss_dssp HHHCSSCCCEECSSCCTTHHHHHHTT---TCCCEECCCCCTTTSSCCHHHHHHHHTTCCSSCCCEECSSSCSSSCCCCCH
T ss_pred hhcCCCCcceecccCccccHHHHHHc---CCEEEEEecchhhccccchHHHHHHhhhcccccEEEEecCCCCCCCeeCCH
Confidence 23489999999999999998887766 999999998653 457887777765 467889999999999999999
Q ss_pred --hHHHHHHhhhcCCEEEEecccccCccc-------c--cCCCCCccEEEEccccccCCCc--eEEEEEecCCCCccccc
Q psy15216 1551 --ILEIGELCRSKGVIFHCDAAQAVGKID-------I--NIQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQ 1617 (2602)
Q Consensus 1551 --l~~I~~ia~~~gi~vivD~a~~~g~~~-------~--~l~~~~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~ 1617 (2602)
+++|+++|++|+++++.|++|..-... . .......-+++.|++|.++++| +||++++....+.....
T Consensus 193 ~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~~~~~~~~~~~~~~~ 272 (397)
T d3tata_ 193 DQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYGERVGGLSVMCEDAEAAGRV 272 (397)
T ss_dssp HHHHHHHHHHHHTTCCCEECBSCTTSSSCHHHHHHHHHHHHTTTCCCEECBCCHHHHTBTTTCCBCCEEECSSTTHHHHH
T ss_pred HHHHHHHHHHhhcCeeEEeehhhhhhccCCcccchhhhhhhhcCCceEEEecCcccccccCccccccccchhHHHHHHHH
Confidence 778899999999999999998632210 0 0111123477789999777777 89999998877654332
Q ss_pred cccCCccccCCCCCcchhHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHhhcCCc--EEEeCCCCCCCCce
Q psy15216 1618 IHGGGHEYGLRSGTLATHQIVGMGEAFR------LARIEMKEELKRILFLQKRLYNGLMESIEE--IYINGDMNNRIPHN 1689 (2602)
Q Consensus 1618 ~~g~~~~~~~~~gt~~~~~~~al~~aL~------~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g--l~i~~~~~~~~~~~ 1689 (2602)
.............+++...+.++...+. ......+..++++..+++.+.+.|....++ +....+...
T Consensus 273 ~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~G----- 347 (397)
T d3tata_ 273 LGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLAEVEEMRTRILAMRQELVKVLSTEMPERNFDYLLNQRG----- 347 (397)
T ss_dssp HHHHHHHTTTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCTTSCTTHHHHCCS-----
T ss_pred HHHHHHHhhcccccccHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEcCCCc-----
Confidence 1100000011122333333333434443 112335566677777777888777663222 111111111
Q ss_pred EEEEEecCCcHHHHHhc---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1690 LNISFNFIEGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1690 ~~~~~~~~~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
.|.+...+ .++..+| ++|.+.+| .|||+.. .+.++|++++++|+++
T Consensus 348 -~F~~~~ls-~e~~~~L~~e~~V~l~~g---------------------------~Ri~~a~-~~~~~i~~~~~ai~~v 396 (397)
T d3tata_ 348 -MFSYTGLS-AAQVDRLREEFGVYLIAS---------------------------GRMCVAG-LNTANVQRVAKAFAAV 396 (397)
T ss_dssp -SBCCCCCC-HHHHHHHTTTTCEECCSS---------------------------SCCBTTS-CCTTTHHHHHHHHHHH
T ss_pred -eEEecCcC-HHHHHHHHHhCCEEeCCC---------------------------CEEEecc-CCHHHHHHHHHHHHHh
Confidence 12222333 3445555 56766533 3888765 3568899999999864
|
| >d1s98a_ b.124.1.1 (A:) Fe-S scaffold protein IscA (YfhF) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: HesB-like domain superfamily: HesB-like domain family: HesB-like domain domain: Fe-S scaffold protein IscA (YfhF) species: Escherichia coli [TaxId: 562]
Probab=99.61 E-value=1.4e-16 Score=156.64 Aligned_cols=85 Identities=36% Similarity=0.686 Sum_probs=79.1
Q ss_pred hhccHHHHHHHHHHHHhcCCCceEEEEEeccCCCcceeeeeeccccCCCCeEEEeCCEEEEEecCccccccccccccchh
Q psy15216 1864 ELVTKKAAKYINKYIQKRGKGIGLRLGVYNRGCSGLSYKLEYVDEKRKEDQVFKLNGVQIFINEKDLLYFNDNFIQKSKI 1943 (2602)
Q Consensus 1864 ~l~t~~A~~~i~~~~~~~~~~~~lr~~v~~~GC~G~~Y~~~~~~~~~~~D~~~~~~~~~v~vd~~s~~~l~~~~~~~~~~ 1943 (2602)
+++|++|+++|+++++++++..+|||+|++||||||+|.|+|++++.++|.+++.+|++|+||+.|++||.|.++||.+.
T Consensus 2 I~iT~~A~~~i~~ll~~~~~~~~lRi~v~~gGCsG~~Y~l~~~~~~~~~D~~~~~~g~~i~id~~s~~~L~G~~IDy~~~ 81 (97)
T d1s98a_ 2 ITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVVDGKSMQFLDGTQLDFVKE 81 (97)
T ss_dssp CEECHHHHHHHHHHHHTTCCCCEEEEEEEEETTTEEEEEEEEESSCCTTEEEEEETTEEEEEEGGGHHHHTTCEEEEECS
T ss_pred EEECHHHHHHHHHHHHhCCCCcEEEEEEEcCCCCcceEEeeecccCCCCcEEEEcCCCEEEEeHHHHHHhCCCEEEEeec
Confidence 46899999999999988777789999999999999999999999999999999999999999999999999999999987
Q ss_pred hhHHH
Q psy15216 1944 DQDAS 1948 (2602)
Q Consensus 1944 ~~~~~ 1948 (2602)
..+..
T Consensus 82 ~~~~g 86 (97)
T d1s98a_ 82 GLNEG 86 (97)
T ss_dssp STTCE
T ss_pred CCcCc
Confidence 66544
|
| >d1s98a_ b.124.1.1 (A:) Fe-S scaffold protein IscA (YfhF) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: HesB-like domain superfamily: HesB-like domain family: HesB-like domain domain: Fe-S scaffold protein IscA (YfhF) species: Escherichia coli [TaxId: 562]
Probab=99.60 E-value=3.5e-16 Score=153.84 Aligned_cols=83 Identities=37% Similarity=0.701 Sum_probs=77.7
Q ss_pred hhccHHHHHHHHHHHHhcCCCeeEEEEEeccccCceeeeeeeccccCCCCEEEEeCCEEEEEeCCccchhhhcccccccc
Q psy15216 468 ELVTKKAAKYINKYIQKRGKGIGLRLGVYNRGCSGLSYKLEYVDEKRKEDQVFKLNGVQIFINEKDLLYFNDNFIQKSKI 547 (2602)
Q Consensus 468 ~l~t~~A~~~~~~~~~~~~~~~~lr~~v~~~GCsg~~y~~~~~~~~~~~D~~~~~~~~~v~vd~~s~~~l~d~~~~~~~~ 547 (2602)
+.+|++|+++|+++++++++..+|||+|++||||||+|.|+|++++.++|.+++.+|++|+||+.|++||.|..+||.+.
T Consensus 2 I~iT~~A~~~i~~ll~~~~~~~~lRi~v~~gGCsG~~Y~l~~~~~~~~~D~~~~~~g~~i~id~~s~~~L~G~~IDy~~~ 81 (97)
T d1s98a_ 2 ITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVVDGKSMQFLDGTQLDFVKE 81 (97)
T ss_dssp CEECHHHHHHHHHHHHTTCCCCEEEEEEEEETTTEEEEEEEEESSCCTTEEEEEETTEEEEEEGGGHHHHTTCEEEEECS
T ss_pred EEECHHHHHHHHHHHHhCCCCcEEEEEEEcCCCCcceEEeeecccCCCCcEEEEcCCCEEEEeHHHHHHhCCCEEEEeec
Confidence 35899999999999998777788999999999999999999999999999999999999999999999999999999986
Q ss_pred cch
Q psy15216 548 DQD 550 (2602)
Q Consensus 548 ~~~ 550 (2602)
...
T Consensus 82 ~~~ 84 (97)
T d1s98a_ 82 GLN 84 (97)
T ss_dssp STT
T ss_pred CCc
Confidence 554
|
| >d1e9ma_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Rhodobacter capsulatus, ferredoxin VI [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: 2Fe-2S ferredoxin-like family: 2Fe-2S ferredoxin-related domain: 2Fe-2S ferredoxin species: Rhodobacter capsulatus, ferredoxin VI [TaxId: 1061]
Probab=99.59 E-value=1.7e-16 Score=159.08 Aligned_cols=72 Identities=31% Similarity=0.632 Sum_probs=67.0
Q ss_pred cccccCCCchHHHHHhhcCcc-cccccccccccCCceEEEcCCC-CcCCCCCHHHHHHhcccCCC-CCCCccCCC
Q psy15216 2531 AIFNENSGISLCDALLKNSIF-IEHACEKSCACATCHVIIREGF-NEINKANEVEEDMLNKAWGL-EENSRLSCQ 2602 (2602)
Q Consensus 2531 ~~ve~~~g~~~~~~~~~~~~~-~~~~c~g~~~c~tch~~~~~~~-~~~~~~~~~e~~~l~~~~~~-~~~srl~cq 2602 (2602)
++++++.|.|||+++++||++ |.+.|||.++|+||||||.++| +.+||++++|.+||+...+. .++||||||
T Consensus 13 ~~i~~~~G~tLl~a~~~~gi~~i~~~CgG~g~C~tC~V~i~~g~~~~l~~~~~~E~~~L~~~~~~~~~~sRLaCQ 87 (106)
T d1e9ma_ 13 HEVEAKPGLTVMEAARDNGVPGIDADCGGACACSTCHAYVDPAWVDKLPKALPTETDMIDFAYEPNPATSRLTCQ 87 (106)
T ss_dssp EEEECCTTSBHHHHHHTTTCTTCCCTTSSSSSSCTTEEEECHHHHTTSCCCCHHHHHHHTTSSSCCTTTEEEGGG
T ss_pred EEEEECCCChHHHHHHHcCCCCcCcccccCceecceEEEeccCccccCCCCCHHHHHHHhhccccCCCceEeeEe
Confidence 578899999999999999996 9999999999999999999998 99999999999999987765 469999999
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Probab=99.58 E-value=4e-15 Score=190.51 Aligned_cols=320 Identities=13% Similarity=0.090 Sum_probs=198.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhC----C--CCCc--EEEeCCHHHHHHH
Q psy15216 2 DYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIY----A--DPRE--IIWTSGATESNNL 73 (2602)
Q Consensus 2 d~a~~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g----~--~~~~--Iv~t~g~T~al~~ 73 (2602)
|..+..|.++.|.+++.+.+..... + +|.+.....++|+++++++. . .++. ++.+.+++.++.+
T Consensus 38 d~~g~~p~~~~V~~A~~~~~~~~~~--~------~Y~p~~G~~~lR~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 109 (396)
T d2q7wa1 38 DETGKTPVLTSVKKAEQYLLENETT--K------NYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRV 109 (396)
T ss_dssp CTTSCCCCCHHHHHHHHHHHHHCCC--C------CCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHhhCCCC--C------CCCCCcCCHHHHHHHHHHHHhhcCCcccccceeeeccchHHHHHHH
Confidence 3445567788999998877654211 1 11122245677777777652 2 2222 4567777666665
Q ss_pred HHHhcccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCC--CCccChHHHHhh---ccCCceEEEEecccCc
Q psy15216 74 AIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEK---ICSDTILVSVMLVNNE 148 (2602)
Q Consensus 74 ~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~ld~e~l~~~---i~~~tklv~i~~~~np 148 (2602)
++..+. .+.+||.|++++|.|+++......+ |++++.++... ++..+...+.+. ..++++++++++||||
T Consensus 110 ~~~~l~--~~~~gd~Vlvp~P~y~~y~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~P~NP 184 (396)
T d2q7wa1 110 AADFLA--KNTSVKRVWVSNPSWPNHKSVFNSA---GLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCCHNP 184 (396)
T ss_dssp HHHHHH--HHSCCCEEEEEESCCTHHHHHHHHT---TCEEEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTT
T ss_pred HHHHHh--hcccceEEEEecCCCccchHHHHHc---CCeeEecccccccccccccchHHHHHHHhccCcEEEEecCCcCC
Confidence 554443 1379999999999999998887766 99999988753 344556555553 4567899999999999
Q ss_pred cccccc---HHHHHHHHHhcCCEEEEeccccccccc-------c--cCCCCCccEEEeccccccCCCC--cEEEEEecCC
Q psy15216 149 IGVIQP---ILEIGELCRSKGVIFHCDAAQAVGKID-------I--NIQNYKVDLMSFSAHKIYGPKG--IGALYIRRNP 214 (2602)
Q Consensus 149 TG~~~~---l~~I~~la~~~g~~livD~a~a~g~~~-------~--dl~~~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~ 214 (2602)
||.+++ +++|+++|++|++++|+|++|+.-... . ........+++.|++|.++.+| +||+++++..
T Consensus 185 TG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R~G~~~~~~~~ 264 (396)
T d2q7wa1 185 TGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSKNFGLYNERVGACTLVAAD 264 (396)
T ss_dssp TCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTTCGGGCCEEEEEECSS
T ss_pred cCeecCHHHHHHHHHHHhcCCeEEEEeccccccccCCccCchHhhhhhhhcccccccccccccccccCCCccccccchhH
Confidence 999998 557888899999999999998632211 0 0011123477779999888777 8999999876
Q ss_pred CCcccceecCCCccccccccCcchhHHHHHHHHHH------HHHHhHHHHHHHHHHHHHHHHHHHhhccCc--eEEeCCC
Q psy15216 215 RTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFR------LARIEMKEELKRILFLQKRLYNGLMESIEE--IYINGDM 286 (2602)
Q Consensus 215 ~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~------~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g--~~l~~~~ 286 (2602)
.+.+................+++..+..++...+. ...+.++..+++++++++.+.+.|.+..+. +..+.++
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~ 344 (396)
T d2q7wa1 265 SETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQ 344 (396)
T ss_dssp HHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTCCSCCTHHHHC
T ss_pred HHHHHHhhhhhhhhhhccccCCCHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceecCC
Confidence 55443211000000011223445554444434432 123446777888888899999999772211 1111111
Q ss_pred CCCCCceEEEEEcccChhHHHHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHH
Q psy15216 287 NNRIPHNLNISFNFIEGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTI 363 (2602)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li 363 (2602)
.+.+. +.+.+ .+++..| +||.+-+| + ||+++.. ++++|++++
T Consensus 345 -----~G~F~-~~~l~-~e~~~~L~~e~gV~~~~g-------------------------~--Ri~~a~l-~~~~i~~~~ 389 (396)
T d2q7wa1 345 -----NGMFS-FSGLT-KEQVLRLREEFGVYAVAS-------------------------G--RVNVAGM-TPDNMAPLC 389 (396)
T ss_dssp -----CSSEE-ECCCC-HHHHHHHHHHHCEECCTT-------------------------C--EEEGGGC-CTTTHHHHH
T ss_pred -----CeEEE-eeCCC-HHHHHHHHHhCCEEECCC-------------------------C--EEEecCC-CHHHHHHHH
Confidence 22223 33333 3444555 57765322 2 9998643 567899999
Q ss_pred HHHHhh
Q psy15216 364 KLLKMK 369 (2602)
Q Consensus 364 ~~L~~~ 369 (2602)
++|+++
T Consensus 390 ~ai~~v 395 (396)
T d2q7wa1 390 EAIVAV 395 (396)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999864
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Probab=99.58 E-value=2.1e-14 Score=184.18 Aligned_cols=345 Identities=12% Similarity=0.059 Sum_probs=208.2
Q ss_pred cHHHHHHHHHhcC-CCccccceeeeeceeeecc-CCCCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHH
Q psy15216 1368 KFIEIKNSLEMTG-FKAESSGIVMRPYTNIVFK-DATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNE 1445 (2602)
Q Consensus 1368 ~~~~v~~aL~~~g-~~~~~~ei~~iP~~~v~L~-~~~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ 1445 (2602)
....+.+++++.. -+..+..++- |.+ +...+..+.+.++......+...+ |. |.......++|++
T Consensus 15 ~i~~~~~~~~~d~~~~kInL~iG~------~~d~~g~~~~~~~V~~A~~~l~~~~~~~-----~~--Y~p~~G~~~lr~a 81 (412)
T d1yaaa_ 15 ALFGIKQRYGQDQRATKVDLGIGA------YRDDNGKPWVLPSVKAAEKLIHNDSSYN-----HE--YLGITGLPSLTSN 81 (412)
T ss_dssp TTHHHHHHHHTCCCSSCEECSSCC------CBCTTSCBCCCHHHHHHHHHHHTCTTCC-----CC--CCCTTCCHHHHHH
T ss_pred hHHHHHHHHhcCCCCCcEEeecCC------CcCCCCCCCCcHHHHHHHHHHHhCcccC-----CC--CCCCCCCHHHHHH
Confidence 3456667776542 2234445541 222 223345577777754443221110 11 1112235788888
Q ss_pred HHHHhC-C-----CCCcEEE--eCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccC--
Q psy15216 1446 VAQLIY-A-----DPREIIW--TSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK-- 1515 (2602)
Q Consensus 1446 ia~~~g-~-----~~~~iv~--t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~-- 1515 (2602)
+++++. . .++.++. +.+++.++..++.... ...+||+|++++|.|+.+......+ |++++.++..
T Consensus 82 ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~gd~Vlip~P~~~~y~~~~~~~---g~~~~~~~~~~~ 156 (412)
T d1yaaa_ 82 AAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFS--KFFPDKLVYLSKPTWANHMAIFENQ---GLKTATYPYWAN 156 (412)
T ss_dssp HHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHH--HHCTTCCEEEEESCCTTHHHHHHTT---TCCEEEEECEET
T ss_pred HHHHHhcccCccccccceeEEecccchhHHHHHHHHHh--ccCCCCEEecccccCchhHHHHHHc---CCceeccccccc
Confidence 888762 1 2223322 3444555444433222 2479999999999999998777665 9999999864
Q ss_pred CCCCcChhHHHhhcc---CCceEEEEeccccccccccC---hHHHHHHhhhcCCEEEEecccccCccc----c-------
Q psy15216 1516 NNGLITLSQLEEKIC---SDTILVSVMLVNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQAVGKID----I------- 1578 (2602)
Q Consensus 1516 ~~~~id~d~l~~~i~---~~t~lv~l~~~~n~tG~~~~---l~~I~~ia~~~gi~vivD~a~~~g~~~----~------- 1578 (2602)
.++.++.+.+.+.+. ++++++++++||||||.+++ +++|+++|++|+++++.|++|..-... .
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~i~i~~P~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~ 236 (412)
T d1yaaa_ 157 ETKSLDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLG 236 (412)
T ss_dssp TTTEECHHHHHHHHHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHH
T ss_pred ccccccchhhhcccccCCCceEEEEecCCCCCccccCCHHHHHHHHhhhccCCEEEeecceeeecccCCcccchhhhhhh
Confidence 345578888877764 56789999999999999998 788999999999999999998532110 0
Q ss_pred --cCCCCCccEEEEccccccCCCc--eEEEEEecCCCCccccccccC----CccccCCCCCcchhHHHHHHHHHH-----
Q psy15216 1579 --NIQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGG----GHEYGLRSGTLATHQIVGMGEAFR----- 1645 (2602)
Q Consensus 1579 --~l~~~~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~~g~----~~~~~~~~gt~~~~~~~al~~aL~----- 1645 (2602)
.......-+++.|++|.++++| +||++++.+.+..+....... .........+++...+.++..++.
T Consensus 237 ~~~~~~~~~~i~~~s~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~ 316 (412)
T d1yaaa_ 237 VEKLSTVSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELT 316 (412)
T ss_dssp HHHTTTTCCEEEEEECTTTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHH
T ss_pred hhccccCCCeEEEEecCCccccCcCceEEEEEchhhhhhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhcChHHH
Confidence 0112223477889999888888 999999988776543211000 000011223444444444445544
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHhhcCCc--EEEeCCCCCCCCceEEEEEecCCcHHHHHhc---CCEEEccccccCC
Q psy15216 1646 -LARIEMKEELKRILFLQKRLYNGLMESIEE--IYINGDMNNRIPHNLNISFNFIEGESLLMAI---KDIAVSSGSACTS 1719 (2602)
Q Consensus 1646 -~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g--l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~L---~gI~v~~g~~~~~ 1719 (2602)
.....++..+.++.++++.+.+.|.+.... +... .+...+|.+.+.+. ++..+| ++|.+.+|
T Consensus 317 ~~~~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~~~------~~~gG~F~~~~ls~-e~~~~L~~e~~V~~~~g----- 384 (412)
T d1yaaa_ 317 EQWHKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHI------VNQCGMFSFTGLTP-QMVKRLEETHAVYLVAS----- 384 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCTHH------HHCCSSEEECCCCH-HHHHHHHHHHCEECCTT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcee------CCCceEEEecCcCH-HHHHHHHHhCCEEECCC-----
Confidence 122346777888888999999999772211 1111 11222355555544 344444 56765422
Q ss_pred CCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1720 ASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1720 ~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
.|||+... +.+.|++++++|++.
T Consensus 385 ----------------------~Ris~~g~-~~~~i~~l~~ai~~v 407 (412)
T d1yaaa_ 385 ----------------------GRASIAGL-NQGNVEYVAKAIDEV 407 (412)
T ss_dssp ----------------------SEEEGGGC-CTTTHHHHHHHHHHH
T ss_pred ----------------------CEEEeccC-CHHHHHHHHHHHHHH
Confidence 38887643 457899999999873
|
| >d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Leishmania major [TaxId: 5664]
Probab=99.58 E-value=1.1e-14 Score=181.45 Aligned_cols=316 Identities=17% Similarity=0.176 Sum_probs=187.8
Q ss_pred cCCCCCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhh
Q psy15216 1399 KDATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFY 1478 (2602)
Q Consensus 1399 ~~~~~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~ 1478 (2602)
|++....+|++++++.+..... .+ ++...+..+++|+++++++|+++++|+||+|+|+|++.++.++.
T Consensus 6 nd~~~g~~P~v~eAl~~~~~~~--~~-------~y~~~~~~~~lr~~ia~~~g~~~~~v~~tsggtean~~a~~~~~--- 73 (340)
T d1svva_ 6 NDYSVGMHPKILDLMARDNMTQ--HA-------GYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLAL--- 73 (340)
T ss_dssp CSCSSCCCHHHHHHHHHHTTCC--CC-------STTCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHHC---
T ss_pred cCCCCCCCHHHHHHHHHHhhcC--CC-------CCCCCHHHHHHHHHHHHHhCCCcceEEEcCCHHHHHHHHHHHHh---
Confidence 3445566789999998865431 11 11223467889999999999998899999999999999999887
Q ss_pred ccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhcc------CCceEEEEeccccccccccC--
Q psy15216 1479 KKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKIC------SDTILVSVMLVNNEIGVIQP-- 1550 (2602)
Q Consensus 1479 ~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~------~~t~lv~l~~~~n~tG~~~~-- 1550 (2602)
.+++++++..+.|.++.............+...+ .. ...+.+....+.. ..+..+++++..|+.|.+.+
T Consensus 74 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (340)
T d1svva_ 74 -RPWEAVIATQLGHISTHETGAIEATGHKVVTAPC-PD-GKLRVADIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQ 150 (340)
T ss_dssp -CTTEEEEEETTSHHHHSSTTHHHHTTCCEEEECC-TT-SCCCHHHHHHHHHHSCSTTSCEEEEEEEESSCTTSCCCCHH
T ss_pred -hhccccccccccceeeeecccccccceeeeeccc-cc-ccccchhHHHHhhhhhcccCCcceeeeecccccccccccHH
Confidence 8999999999998887655544433333333322 22 2223333333321 12334555555555666655
Q ss_pred -hHHHHHHhhhcCCEEEEecccccCcccccCCCCC-------ccEEEEccccccCCCceEEEEEecCCCCccccccccCC
Q psy15216 1551 -ILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYK-------VDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGG 1622 (2602)
Q Consensus 1551 -l~~I~~ia~~~gi~vivD~a~~~g~~~~~l~~~~-------~D~~v~S~~K~~gp~G~G~l~~~~~~~~~l~~~~~g~~ 1622 (2602)
+..+..+|+++|.++++|+++..+....+..... .+....+.+|..+..+.++............+..
T Consensus 151 ~~~~~~~~~~~~g~~~~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 226 (340)
T d1svva_ 151 ELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAGGMFGEALIILNDALKPNARHLI---- 226 (340)
T ss_dssp HHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTTCSSCEEEEECSGGGCTTHHHHH----
T ss_pred HhhhhhcccccccceeeeeccceeeeecccccccccccccccceeeecCCccccccccccccccchhhhhhhhhhc----
Confidence 5567788899999999999987655444333221 3466666666444444444444333332222211
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecCCcHH
Q psy15216 1623 HEYGLRSGTLATHQIVGMGEAFRLAR-IEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGES 1701 (2602)
Q Consensus 1623 ~~~~~~~gt~~~~~~~al~~aL~~~~-~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~ 1701 (2602)
....++.+.....+ .+++.... .......++...++.++.+.|.. +|+.+..|... ++..+.++. +
T Consensus 227 ---~~~~~~~~~~~~~~-aa~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~g~~~~~p~~~---~~v~~~~~~----~ 293 (340)
T d1svva_ 227 ---KQRGALMAKGWLLG-IQFEVLMKDNLFFELGAHSNKMAAILKAGLEA--CGIRLAWPSAS---NQLFPILEN----T 293 (340)
T ss_dssp ---HHTTCCCTTTHHHH-HHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHH--TTCCBSSCCSS---SEECBEEEH----H
T ss_pred ---ccccCccchhhHHH-HHHHHHhhhhHHHHHHHHHHHHHhhhHHHHhc--CCCeeecCCCc---eEEEEeCCH----H
Confidence 11122333322222 23333222 23556677788888899999987 67777654332 233333332 2
Q ss_pred HHHhc-CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1702 LLMAI-KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1702 ~~~~L-~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
....| ....+. +..... ..++.||+|+++++|++|||+++++|++
T Consensus 294 ~~~~l~~~~~~~-~~~~~~-----------------~~~~~vR~s~~~~~t~edid~~l~~l~~ 339 (340)
T d1svva_ 294 MIAELNNDFDMY-TVEPLK-----------------DGTCIMRLCTSWATEEKECHRFVEVLKR 339 (340)
T ss_dssp HHHHHTTTEECE-EEEEET-----------------TTEEEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhh-cccccC-----------------CCCcEEEEECCCCCCHHHHHHHHHHHhc
Confidence 23333 221111 111111 1137899999999999999999999986
|
| >d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.58 E-value=2.2e-14 Score=176.61 Aligned_cols=216 Identities=15% Similarity=0.137 Sum_probs=160.6
Q ss_pred HHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHHH-HhCCcEEEEecc
Q psy15216 1436 EKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDGFRVTYLKP 1514 (2602)
Q Consensus 1436 ~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~-~~~G~~v~~v~~ 1514 (2602)
......++++++.+-|.+ ..+.+++|..|+. ++.+++ ++||+|+++..-|.......+.. .+.|+++.+++.
T Consensus 48 nPt~~~le~~la~LE~~~--~a~~fsSGMaAis-all~ll----~~Gd~vv~~~~~Yg~t~~l~~~~~~~~gi~~~~~d~ 120 (380)
T d1ibja_ 48 NPTRDALESLLAKLDKAD--RAFCFTSGMAALS-AVTHLI----KNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNT 120 (380)
T ss_dssp CHHHHHHHHHHHHHHTCS--EEEEESSHHHHHH-HHHTTS----CTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECT
T ss_pred ChHHHHHHHHHHHHcCCc--eEEehhhHHHHHH-HHHHhh----CCCCEEEEEecccccccchhhhhhccccccccccCc
Confidence 345678899999999964 5677888888886 455655 89999999999999988877664 556999998864
Q ss_pred CCCCCcChhHHHhhccCCceEEEEeccccccccccChHHHHHHhhhcCCEEEEecccccCcccccCCCCCccEEEEcccc
Q psy15216 1515 KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK 1594 (2602)
Q Consensus 1515 ~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K 1594 (2602)
. +++.++++++++|++|++..|+||+..+.|+++|+++||++|+++++|.+.+.+...-++ ++|+|+++.|..|
T Consensus 121 ~-----~~~~~~~ai~~~t~li~~EtpsNP~l~v~Di~~i~~iA~~~g~~~vVDnT~atP~~~~Pl-~~GaDiVvhS~TK 194 (380)
T d1ibja_ 121 T-----KLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVLSRPL-ELGADIVMHSATK 194 (380)
T ss_dssp T-----SHHHHHHHCCSSEEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEECTTTCTTTCCGG-GTTCSEEEEETTT
T ss_pred c-----hHHHHHHHhccCccEEEeccccccccccccHHHHHHHHHHcCCeEEeecccccccccccc-ccCCCEEEecccc
Confidence 3 789999999999999999999999999999999999999999999999998765543333 4689999999999
Q ss_pred ccCCCc---eEEEEEecC-CCCccccccccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15216 1595 IYGPKG---IGALYIRRN-PRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLM 1670 (2602)
Q Consensus 1595 ~~gp~G---~G~l~~~~~-~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~ 1670 (2602)
+++..| .|.++.+++ +.+.+.... .....++++...+.+..+++- +..++++..+++..+.+.|.
T Consensus 195 yi~GhsDv~~G~v~~~~~~~~~~~~~~~-------~~~G~~l~p~~a~ll~rgl~T----l~lRm~~~~~nA~~lA~~L~ 263 (380)
T d1ibja_ 195 FIAGHSDVMAGVLAVKGEKLAKEVYFLQ-------NSEGSGLAPFDCWLCLRGIKT----MALRIEKQQENARKIAMYLS 263 (380)
T ss_dssp TTTCSSCCCCEEEEECSHHHHHHHHHHH-------HHTTCBCCHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHHHHH
T ss_pred eeccccCccccccccchhhHHHHHHhhc-------cccCCcCCHHHHHHHHhcchh----hhhhHHHHHHHHHHHHHHHH
Confidence 665444 577777753 222222211 122334555555545455543 45556666777777777777
Q ss_pred hcCCcE
Q psy15216 1671 ESIEEI 1676 (2602)
Q Consensus 1671 ~~~~gl 1676 (2602)
+ .|.+
T Consensus 264 ~-hp~V 268 (380)
T d1ibja_ 264 S-HPRV 268 (380)
T ss_dssp T-CTTC
T ss_pred h-CCCe
Confidence 6 5554
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Probab=99.57 E-value=3.8e-15 Score=190.66 Aligned_cols=315 Identities=13% Similarity=0.087 Sum_probs=199.3
Q ss_pred CCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhC----C--CCCc--EEEeCCHHHHHHHHHHhh
Q psy15216 1403 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIY----A--DPRE--IIWTSGATESNNLAIKGA 1474 (2602)
Q Consensus 1403 ~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g----~--~~~~--iv~t~gaT~al~~al~~l 1474 (2602)
.+.++.+.+++.+..+...... |. ......++|+++++++. . .++. ++.+.+++.++.+++..+
T Consensus 43 ~p~~~~V~~A~~~~~~~~~~~~----Y~----p~~G~~~lR~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 114 (396)
T d2q7wa1 43 TPVLTSVKKAEQYLLENETTKN----YL----GIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFL 114 (396)
T ss_dssp CCCCHHHHHHHHHHHHHCCCCC----CC----CTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhhCCCCCC----CC----CCcCCHHHHHHHHHHHHhhcCCcccccceeeeccchHHHHHHHHHHHH
Confidence 4566788898888776532110 11 11235778888888762 1 2233 345677776766655544
Q ss_pred hhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCC--CCCcChhHHHh---hccCCceEEEEecccccccccc
Q psy15216 1475 AHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEE---KICSDTILVSVMLVNNEIGVIQ 1549 (2602)
Q Consensus 1475 ~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~id~d~l~~---~i~~~t~lv~l~~~~n~tG~~~ 1549 (2602)
. .+++||+|++++|.|+++......+ |++++.++... ++..+...+.+ .+.++++++++++|+||||.++
T Consensus 115 ~--~~~~gd~Vlvp~P~y~~y~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~P~NPTG~~~ 189 (396)
T d2q7wa1 115 A--KNTSVKRVWVSNPSWPNHKSVFNSA---GLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGIDP 189 (396)
T ss_dssp H--HHSCCCEEEEEESCCTHHHHHHHHT---TCEEEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCC
T ss_pred h--hcccceEEEEecCCCccchHHHHHc---CCeeEecccccccccccccchHHHHHHHhccCcEEEEecCCcCCcCeec
Confidence 3 2389999999999999998887766 99999998753 33455555554 4467889999999999999999
Q ss_pred C---hHHHHHHhhhcCCEEEEecccccCccc-------c--cCCCCCccEEEEccccccCCCc--eEEEEEecCCCCccc
Q psy15216 1550 P---ILEIGELCRSKGVIFHCDAAQAVGKID-------I--NIQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIE 1615 (2602)
Q Consensus 1550 ~---l~~I~~ia~~~gi~vivD~a~~~g~~~-------~--~l~~~~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~ 1615 (2602)
+ +++|+++|++|++++|.|++|..-... . ........+++.|++|.++++| +||++++...++...
T Consensus 190 s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R~G~~~~~~~~~~~~~ 269 (396)
T d2q7wa1 190 TLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSKNFGLYNERVGACTLVAADSETVD 269 (396)
T ss_dssp CHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTTCGGGCCEEEEEECSSHHHHH
T ss_pred CHHHHHHHHHHHhcCCeEEEEeccccccccCCccCchHhhhhhhhcccccccccccccccccCCCccccccchhHHHHHH
Confidence 9 668899999999999999998632210 0 0011223477778999777777 899999987655432
Q ss_pred cccccCCccccCCCCCcchhHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHhhcCCc--EEEeCCCCCCCC
Q psy15216 1616 AQIHGGGHEYGLRSGTLATHQIVGMGEAFR------LARIEMKEELKRILFLQKRLYNGLMESIEE--IYINGDMNNRIP 1687 (2602)
Q Consensus 1616 ~~~~g~~~~~~~~~gt~~~~~~~al~~aL~------~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g--l~i~~~~~~~~~ 1687 (2602)
...............+++..+..++...+. .....++..+++++++++.+.+.|.+..+. +....++
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~----- 344 (396)
T d2q7wa1 270 RAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQ----- 344 (396)
T ss_dssp HHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTCCSCCTHHHHC-----
T ss_pred HhhhhhhhhhhccccCCCHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceecCC-----
Confidence 211000000111223455555555544443 123457778888899999999999873221 1111111
Q ss_pred ceEEEEEecCCcHHHHHhc---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1688 HNLNISFNFIEGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1688 ~~~~~~~~~~~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
.+ .|.+.+.+. ++..+| +||.+.+| + ||++... +.++|++++++|++
T Consensus 345 ~G-~F~~~~l~~-e~~~~L~~e~gV~~~~g-------------------------~--Ri~~a~l-~~~~i~~~~~ai~~ 394 (396)
T d2q7wa1 345 NG-MFSFSGLTK-EQVLRLREEFGVYAVAS-------------------------G--RVNVAGM-TPDNMAPLCEAIVA 394 (396)
T ss_dssp CS-SEEECCCCH-HHHHHHHHHHCEECCTT-------------------------C--EEEGGGC-CTTTHHHHHHHHHH
T ss_pred Ce-EEEeeCCCH-HHHHHHHHhCCEEECCC-------------------------C--EEEecCC-CHHHHHHHHHHHHH
Confidence 11 244444443 334444 57766432 2 8888653 45789999999986
Q ss_pred h
Q psy15216 1765 K 1765 (2602)
Q Consensus 1765 ~ 1765 (2602)
+
T Consensus 395 v 395 (396)
T d2q7wa1 395 V 395 (396)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Probab=99.56 E-value=2.9e-14 Score=182.46 Aligned_cols=342 Identities=13% Similarity=0.052 Sum_probs=205.3
Q ss_pred cccHHHHHHHHHhcCC-Cccccceeeeeceeeecc-CCCCCCCHHHHHHHHHHHhhcc--CCCCCccchhHHHHHHHHHH
Q psy15216 1366 PSKFIEIKNSLEMTGF-KAESSGIVMRPYTNIVFK-DATTPIDPRVVDKMIPYLRVQF--GNPASRNHIYGWTAEKAIEK 1441 (2602)
Q Consensus 1366 ~~~~~~v~~aL~~~g~-~~~~~ei~~iP~~~v~L~-~~~~~~~~~v~eal~~~l~~~~--~np~~~~~~~~~~~~~~~~~ 1441 (2602)
|+...++.+++++... +..+..++. |.+ +...+.++.+.+++.+..+... .|.. .....+
T Consensus 10 ~d~i~~l~~~~~~d~~~~~InL~iG~------~~d~~g~~~~~~~V~~A~~~~~~~~~~~~Y~p----------~~G~~~ 73 (394)
T d2ay1a_ 10 PDKILALMGEFRADPRQGKIDLGVGV------YKDATGHTPIMRAVHAAEQRMLETETTKTYAG----------LSGEPE 73 (394)
T ss_dssp CCSHHHHHHHHHHCCCTTCEECCCCS------CCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCC----------SSCCHH
T ss_pred CChHHHHHHHHhCCCCCCCEEccCCC------ccCCCCCCCCCHHHHHHHHHHhhCCCCCCCCC----------CCCCHH
Confidence 3445667677765422 233444441 222 2334566889999888876532 1211 112567
Q ss_pred HHHHHHHHh----CC-CCCcEEEeCCHHHHHH--HHHHhhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEecc
Q psy15216 1442 ARNEVAQLI----YA-DPREIIWTSGATESNN--LAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP 1514 (2602)
Q Consensus 1442 lr~~ia~~~----g~-~~~~iv~t~gaT~al~--~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~ 1514 (2602)
+|+++++++ +. .+...+++.+++.+.. +.+..+. ++||+|++++|.|+.|...++.+ |.+++.++.
T Consensus 74 lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~gd~V~~p~p~~~~y~~~~~~~---g~~~v~~~~ 146 (394)
T d2ay1a_ 74 FQKAMGELILGDGLKSETTATLATVGGTGALRQALELARMA----NPDLRVFVSDPTWPNHVSIMNFM---GLPVQTYRY 146 (394)
T ss_dssp HHHHHHHHHHGGGCCGGGEEEEEEEHHHHHHHHHHHHHHHH----CTTCCEEEEESCCHHHHHHHHHH---TCCEEEEEC
T ss_pred HHHHHHHHHhccccccccccceeccCchHHHHHHHHHhhhc----CCceEEEEecccccchHHHHHHc---CCEEEEecc
Confidence 888888876 22 1223455555555544 4444444 89999999999999999888888 899998886
Q ss_pred CC--CCCcChhHHHhh---ccCCceEEEEeccccccccccC---hHHHHHHhhhcCCEEEEecccccCccc------c--
Q psy15216 1515 KN--NGLITLSQLEEK---ICSDTILVSVMLVNNEIGVIQP---ILEIGELCRSKGVIFHCDAAQAVGKID------I-- 1578 (2602)
Q Consensus 1515 ~~--~~~id~d~l~~~---i~~~t~lv~l~~~~n~tG~~~~---l~~I~~ia~~~gi~vivD~a~~~g~~~------~-- 1578 (2602)
.. ++..+.+++++. +.++++++++++||||||.+++ +++|+++|++|+++++.|++|..-... .
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~ 226 (394)
T d2ay1a_ 147 FDAETRGVDFEGMKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTR 226 (394)
T ss_dssp EETTTTEECHHHHHHHHHTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHH
T ss_pred cchhcccccchhHHHHHhhcccCcEEEEeCCCCCCCCCCCCHHHHHHHHHHhhcceEEEEEeccchhhcccccccchhhh
Confidence 43 344555555444 4567889999999999999999 778999999999999999998532111 0
Q ss_pred -cCCCCCccEEEEccccccCCCc--eEEEEEecCCCCccccccccCCccccCCCCCcchhHHHHHHHHHH------HHHH
Q psy15216 1579 -NIQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFR------LARI 1649 (2602)
Q Consensus 1579 -~l~~~~~D~~v~S~~K~~gp~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~------~~~~ 1649 (2602)
........+++.|++|.++++| +|++.++....+..................+++......+...+. ....
T Consensus 227 ~~~~~~~~~~~~~s~sk~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 306 (394)
T d2ay1a_ 227 LIASRIPEVLIAASCSKNFGIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMA 306 (394)
T ss_dssp HHHHHCSSEEEEEECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHH
T ss_pred hhhhhcccccccccccccccCCcccccchhhchhHHHHHHHhhhhhHhhhcccccchhHHHHHHHHHhcCCHHHHHHHHH
Confidence 0111112466678899776666 899999987654432211000000011112233333332323332 2234
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCc--EEEeCCCCCCCCceEEEEEecCCcHHHHHhc---CCEEEccccccCCCCCCh
Q psy15216 1650 EMKEELKRILFLQKRLYNGLMESIEE--IYINGDMNNRIPHNLNISFNFIEGESLLMAI---KDIAVSSGSACTSASLEP 1724 (2602)
Q Consensus 1650 ~~~~~~~~~~~l~~~l~~~L~~~~~g--l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~L---~gI~v~~g~~~~~~~~~~ 1724 (2602)
.++..++++..+++.+.+.|.+..+. +... .+....|.+.+.+. ++.++| ++|.+.+|
T Consensus 307 ~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~------~~~~G~F~~~~ls~-~~~~~L~~~~~V~~~~g---------- 369 (394)
T d2ay1a_ 307 ELEAVRSGMLRLREQLAGELRDLSGSDRFGFV------AEHRGMFSRLGATP-EQVKRIKEEFGIYMVGD---------- 369 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSSTTTHH------HHCCSSEEECCCCH-HHHHHHHHHHCEECCTT----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCceeeE------CCCceeEEecCcCH-HHHHHHHHhCCEEecCC----------
Confidence 46677888888899999998762111 0111 11222344444433 344444 57776532
Q ss_pred hHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1725 SYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1725 ~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
.||++..- +.++|+++.++|.++
T Consensus 370 -----------------~Ri~~a~l-~~~~i~~l~~ai~~v 392 (394)
T d2ay1a_ 370 -----------------SRINIAGL-NDNTIPILARAIIEV 392 (394)
T ss_dssp -----------------CEEEGGGC-CTTTHHHHHHHHHHH
T ss_pred -----------------CEEEecCC-CHHHHHHHHHHHHHh
Confidence 48887643 558999999999874
|
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=99.56 E-value=9.8e-15 Score=182.97 Aligned_cols=309 Identities=16% Similarity=0.159 Sum_probs=192.3
Q ss_pred CCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCC
Q psy15216 7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRG 86 (2602)
Q Consensus 7 ~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~g 86 (2602)
|.|+|++++|+.++. .+. ..++. .+...++++++|+++|.+ ++++++|+|+|+.+++.++. ++|
T Consensus 10 t~p~p~v~~A~~~a~------~g~--~~yg~--~p~~~~le~~lA~~~G~~--~~~~~~sGt~A~~~al~a~~----~~g 73 (343)
T d1m6sa_ 10 TKPTEEMRKAMAQAE------VGD--DVYGE--DPTINELERLAAETFGKE--AALFVPSGTMGNQVSIMAHT----QRG 73 (343)
T ss_dssp CCCCHHHHHHHHTCC------CCC--GGGTC--CHHHHHHHHHHHHHTTCS--EEEEESCHHHHHHHHHHHHC----CTT
T ss_pred CCCCHHHHHHHHhhh------cCC--cccCC--CHHHHHHHHHHHHHHCCC--eEEEeCCHHHHHHHHHHHHh----ccC
Confidence 456788999986542 221 12222 245788999999999965 78999999999999999988 899
Q ss_pred CEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccCC------ce-EEEEecccCccccccc---HH
Q psy15216 87 KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSD------TI-LVSVMLVNNEIGVIQP---IL 156 (2602)
Q Consensus 87 d~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~~------tk-lv~i~~~~npTG~~~~---l~ 156 (2602)
|.+++..+.|.++..........+..++.++.+ .+..|++.+++.++.. +. .+..+.++++.|.+.| +.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 152 (343)
T d1m6sa_ 74 DEVILEADSHIFWYEVGAMAVLSGVMPHPVPGK-NGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIK 152 (343)
T ss_dssp CEEEEETTCHHHHSSTTHHHHHTCCEEEEECEE-TTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHH
T ss_pred Cceeccccccceeeecccccccccceeeccccc-cCccCHHHHHHhhhhhhcccccccccccccccccCCceecCHHHHH
Confidence 999999998887665555554556777777643 4567999999999754 33 4555566677777776 45
Q ss_pred HHHHHHHhcCCEEEEecccccccccccCC-----CCCccEEEecccc-ccCCCCcEEEEEecCCCCcccceecCCCcccc
Q psy15216 157 EIGELCRSKGVIFHCDAAQAVGKIDINIQ-----NYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGHEYG 230 (2602)
Q Consensus 157 ~I~~la~~~g~~livD~a~a~g~~~~dl~-----~~~~D~~~~S~~K-~~Gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~ 230 (2602)
+|.++|++||+++++|+++..+....... ....+..+++.+| ..|+. .|+....++......... .
T Consensus 153 ~i~~~~~~~g~~~~~D~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~-------~ 224 (343)
T d1m6sa_ 153 EICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAPV-GSVVVGDRDFIERARKAR-------K 224 (343)
T ss_dssp HHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTCSEEEEESSSTTCCSS-CEEEEECHHHHHHHHHHH-------H
T ss_pred HHHHHHHhcCeEEEeccccccccccccccchhhhccccccccccccccccccc-cccccccHHHHhhhHhhC-------c
Confidence 67777899999999999987543221111 0113455555555 44444 466666554333322111 1
Q ss_pred ccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc--cChhHHHH
Q psy15216 231 LRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF--IEGESLLM 308 (2602)
Q Consensus 231 ~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~ 308 (2602)
...++.......++ +.+..... .........++..++.+.+.. +.+.....+.. .+.+.+.++. .+..++.+
T Consensus 225 ~~~~~~~~~~~~~a-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~v~~~~~~~~~~a~~l~~ 298 (343)
T d1m6sa_ 225 MLGGGMRQAGVLAA-AGIIALTK-MVDRLKEDHENARFLALKLKE-IGYSVNPEDVK---TNMVILRTDNLKVNAHGFIE 298 (343)
T ss_dssp HHTCCCSSTHHHHH-HHHHHHHH-SSTTHHHHHHHHHHHHHHHHH-HTCBCCGGGCC---SSEEEEECTTSSSCHHHHHH
T ss_pred ccccccchhHHHHH-hhhhhhhh-hHHHHHHHHHHHHHhhhHHHH-hccCccCCCCC---ceEEEEEeCCCcccHHHHHH
Confidence 11223333332222 11111111 112223334444555555554 33433332221 2444555443 34567877
Q ss_pred Hh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 309 AI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 309 ~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
.| +||.+++.. .+++|++++..+|+||||+++++|++.
T Consensus 299 ~L~~~Gi~v~~~~-----------------------~~~iRi~~~~~~t~edid~~v~~l~~v 338 (343)
T d1m6sa_ 299 ALRNSGVLANAVS-----------------------DTEIRLVTHKDVSRNDIEEALNIFEKL 338 (343)
T ss_dssp HHHHHTEECEEEE-----------------------TTEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHCCCEEecCC-----------------------CCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 77 799886431 267999999999999999999999974
|
| >d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Escherichia coli [TaxId: 562]
Probab=99.56 E-value=2.1e-13 Score=167.69 Aligned_cols=301 Identities=14% Similarity=0.070 Sum_probs=200.2
Q ss_pred HHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHHH-HhCCcEEEEecc
Q psy15216 1436 EKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDGFRVTYLKP 1514 (2602)
Q Consensus 1436 ~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~-~~~G~~v~~v~~ 1514 (2602)
......+++.++++-|.. ..+.+++|..|+..++.++. ++||+|++++.-|.......... ...|..+.+++.
T Consensus 49 nPt~~~le~~la~LEgg~--~a~~~sSGMaAi~~~l~~l~----~~gd~vv~~~~~yg~t~~~~~~~~~~~g~~~~~~d~ 122 (384)
T d1cs1a_ 49 NPTRDVVQRALAELEGGA--GAVLTNTGMSAIHLVTTVFL----KPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQ 122 (384)
T ss_dssp CHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHC----CTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEECT
T ss_pred CHHHHHHHHHHHHHhCCC--ceEEecChHHHHHHHHhhcc----cccceecccccccchhhhhhhhhhcccccccccccC
Confidence 345778899999999954 67888999999999999887 89999999999998877766555 445788888764
Q ss_pred CCCCCcChhHHHhhccCCceEEEEeccccccccccChHHHHHHhhhcCCEEEEecccccCcccccCCCCCccEEEEcccc
Q psy15216 1515 KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHK 1594 (2602)
Q Consensus 1515 ~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K 1594 (2602)
.|.+.+++++.++|++|++..|+||+..+.|+++|+++||++|++++||.+-+.+...-+ -++|+|+++.|..|
T Consensus 123 -----~d~~~~~~~~~~~t~~v~~EspsNP~l~v~Di~~i~~ia~~~g~~~vVDNT~atP~~~~P-l~~GaDiVvhS~TK 196 (384)
T d1cs1a_ 123 -----GDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQNP-LALGADLVLHSCTK 196 (384)
T ss_dssp -----TCHHHHHHHHHTCCSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCG-GGGTCSEEEEETTT
T ss_pred -----CCHHHHHhhccccccEEEEeccccccceeccHHHHhhhhhhcCcEEEEeccccCcccccc-cccCCCEEEEcccc
Confidence 378999999999999999999999999999999999999999999999999866654333 34689999999999
Q ss_pred ccCCCc---eEEEEEecCCC-CccccccccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15216 1595 IYGPKG---IGALYIRRNPR-TRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLM 1670 (2602)
Q Consensus 1595 ~~gp~G---~G~l~~~~~~~-~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~ 1670 (2602)
+++..| .|.++.+++.. +.+.... .....+.++...+.+..+|+- +.-++++..+.+..+.+.|.
T Consensus 197 yi~Ghsdv~~G~vv~~~~~~~~~~~~~~-------~~~G~~~~p~~a~ll~rgL~T----L~lRm~~~~~nA~~lA~~L~ 265 (384)
T d1cs1a_ 197 YLNGHSDVVAGVVIAKDPDVVTELAWWA-------NNIGVTGGAFDSYLLLRGLRT----LVPRMELAQRNAQAIVKYLQ 265 (384)
T ss_dssp TTTCSSCCCCEEEEESSHHHHHHHHHHH-------HHHTCBCCHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHHHHT
T ss_pred ccccCCCcccccccCCchhhhhhhhhhh-------hhhhhccccccHHHHhhccch----hHHHHHHHHHHHHHHHHhcc
Confidence 776555 57677654322 2221111 111224444443333344442 45566677777888888887
Q ss_pred hcCCcEEE-eCCC--CCC-----------CCceEEEEEecC--CcHHHHHhcC--CEEEccccccC--------CCCCCh
Q psy15216 1671 ESIEEIYI-NGDM--NNR-----------IPHNLNISFNFI--EGESLLMAIK--DIAVSSGSACT--------SASLEP 1724 (2602)
Q Consensus 1671 ~~~~gl~i-~~~~--~~~-----------~~~~~~~~~~~~--~~~~~~~~L~--gI~v~~g~~~~--------~~~~~~ 1724 (2602)
+ .|.+.- .-|. ++. ...+..|.+.+. ....|++.|+ .+.++-|.... .....+
T Consensus 266 ~-hp~V~~V~yPgL~s~p~h~l~~r~~~g~gg~~sf~l~~~~~~a~~f~~~L~l~~~a~SlGg~eSLi~~p~~~th~~~~ 344 (384)
T d1cs1a_ 266 T-QPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLRRFLGGLSLFTLAESLGGVESLISHAATMTHAGMA 344 (384)
T ss_dssp T-CTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSCHHHHHHHHHTCSSSEEBSCCCSSSCEEEEGGGTTTTTSC
T ss_pred c-CCceeeeeeccccchhHHHHHHhhcCCCcceeEEeecchHHHHHHHHHhCCcceeccccCCccceeccccccccccCC
Confidence 6 677643 2221 110 122333333321 1235666663 22332232211 001122
Q ss_pred hHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1725 SYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1725 ~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
.......|+++ +.||||+|..+.++-++.+-++|+.
T Consensus 345 ~e~r~~~Gi~~----~lvRlSvGlEd~eDLi~Dl~~AL~a 380 (384)
T d1cs1a_ 345 PEARAAAGISE----TLLRISTGIEDGEDLIADLENGFRA 380 (384)
T ss_dssp HHHHHHHTCCT----TEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCc----CeEEEEeccCCHHHHHHHHHHHHHH
Confidence 33445677764 8999999987665555555555553
|
| >d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.55 E-value=3.2e-14 Score=171.62 Aligned_cols=331 Identities=17% Similarity=0.207 Sum_probs=228.2
Q ss_pred CCCCCCCHHHHHHHHHHHhhhcC--CCCCCCcchhhhHHHHH-HHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhccc
Q psy15216 4 SATTPIDPRVVDKMIPYLRVQFG--NPASRNHIYGWTAEKAI-EKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAH 80 (2602)
Q Consensus 4 a~~~~~p~~v~~a~~~~l~~~~~--~p~~~~~~~~~~~~~~~-~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~ 80 (2602)
++-..+++.|++++...+.+.|. +|+. .|..|....+.+ .-+.++..++||+...+|-.. |++.|+..++.++.
T Consensus 30 aSEN~~S~~v~~a~~S~l~nkyaeG~pg~-ryy~G~~~id~iE~la~~ra~~lF~a~~anVqp~-SGs~An~av~~all- 106 (405)
T d1kl1a_ 30 ASENFVSRAVMEAQGSVLTNKYAEGYPGR-RYYGGCEYVDIVEELARERAKQLFGAEHANVQPH-SGAQANMAVYFTVL- 106 (405)
T ss_dssp TTCCCCCHHHHHHHTSGGGGCCCCEETTE-ESSSCCHHHHHHHHHHHHHHHHHHCCSEEECCCS-SHHHHHHHHHHHHC-
T ss_pred ccCCcCCHHHHHHhcCcccCcCcCCCCCc-cccCCchhHHHHHHHHHHHHHHHhCCCcceeecc-CchHHHHHHHHHhc-
Confidence 45567899999999988877554 5654 333344444444 445678888999875555554 45678899999998
Q ss_pred ccccCCCEEEEcCCCCcccHHH---HHHHHhCCcEEEEeccCC-CCccChHHHHhhcc-CCceEEEEecccCcccccccH
Q psy15216 81 FYKKRGKHIITVQTEHKSVLDS---IRKLENDGFRVTYLKPKN-NGLITLSQLEEKIC-SDTILVSVMLVNNEIGVIQPI 155 (2602)
Q Consensus 81 ~~~~~gd~Vlv~~~~~~s~~~~---~~~~~~~G~~v~~v~~~~-~~~ld~e~l~~~i~-~~tklv~i~~~~npTG~~~~l 155 (2602)
+|||.|+..+..+...... .... ....++..+++++ ++.+|++++++.+. .++++|++-.-. .-..+|+
T Consensus 107 ---~pGD~im~l~l~~GGHlshg~~~~~~-g~~~~~~~y~~d~~~~~ID~d~l~~~a~~~kPklIi~G~S~--y~r~~d~ 180 (405)
T d1kl1a_ 107 ---EHGDTVLGMNLSHGGHLTHGSPVNFS-GVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASA--YPRIIDF 180 (405)
T ss_dssp ---CTTCEEEEECGGGTCCGGGTCTTSHH-HHHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEEECCSS--CCSCCCH
T ss_pred ---CCCCEEEEeecccccccccCcccccc-ceEEEEEEeccchhcccccHHHHHHHHHhhCcceEEecccc--cccccCh
Confidence 8999999988666554321 1111 1246778888875 57899999999886 578888875544 4456789
Q ss_pred HHHHHHHHhcCCEEEEecccccc-----cccccCCCCCccEEEecccc-ccCCCCcEEEEEecCCCCcccceecCCCccc
Q psy15216 156 LEIGELCRSKGVIFHCDAAQAVG-----KIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGHEY 229 (2602)
Q Consensus 156 ~~I~~la~~~g~~livD~a~a~g-----~~~~dl~~~~~D~~~~S~~K-~~Gp~G~G~l~~~~~~~~~l~~~~~g~~~~~ 229 (2602)
+++.++|++.|++++.|.+|-.| ..|-++ + ++|++.+|.|| +.||+| |+++.+++..+.+....+.+
T Consensus 181 ~~~reIad~vga~l~~D~aH~~GLIa~g~~~~P~-~-~aDvvt~tThKtlrGPrg-g~I~~~~~~~~~i~~avfPg---- 253 (405)
T d1kl1a_ 181 AKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPV-P-YAHFVTTTTHKTLRGPRG-GMILCQEQFAKQIDKAIFPG---- 253 (405)
T ss_dssp HHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCST-T-TCSEEEEESSSTTCCCSC-EEEEECHHHHHHHHHHHTTT----
T ss_pred HHHHHHHhhhCCEEecchhhHhhhhhhhhcCChh-h-hhhheeccccccccCCCC-ceEEecchhHHHHHhhhCcc----
Confidence 99999999999999999999654 334344 2 47999999999 778997 88888876665555433222
Q ss_pred cccccCcchhHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc--cChhHH
Q psy15216 230 GLRSGTLATHQIVGMGEAFRL-ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF--IEGESL 306 (2602)
Q Consensus 230 ~~~~gt~~~~~~~al~~al~~-~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~--~~~~~~ 306 (2602)
..|.|..+.+++...++.. ....+....++..++++.|.+.|.+ .|+.+...... .+.+.+.+.. .++...
T Consensus 254 --~qggp~~~~iAa~Aval~Ea~~~~fk~Ya~qvv~NAkaLa~~L~~--~G~~vv~ggTd--~H~vlvdl~~~~~~g~~a 327 (405)
T d1kl1a_ 254 --IQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQN--EGFTLVSGGTD--NHLLLVDLRPQQLTGKTA 327 (405)
T ss_dssp --TCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHH--TTCEEGGGSCS--SSEEEEECGGGTCCHHHH
T ss_pred --cccCcchhHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhc--CCceeecCCCc--cceeeccccccCCcHHHH
Confidence 2457888888888888874 3456788889999999999999988 69999864332 3455555532 344444
Q ss_pred HHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecC----CCCCHHHHHHHHHHHHhh
Q psy15216 307 LMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIG----RFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 307 ~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~----~~~t~edid~li~~L~~~ 369 (2602)
...| .||.+..-.- |. +.........|||+.. ....++|+.++.+.|.+.
T Consensus 328 e~~Le~agI~~Nkn~i--P~-----------d~~~~~~~SGiRiGT~a~TtrG~~e~dm~~ia~~I~~~ 383 (405)
T d1kl1a_ 328 EKVLDEVGITVNKNTI--PY-----------DPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLV 383 (405)
T ss_dssp HHHHHHHTEECEECCC--TT-----------CSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCeEEcCCcC--CC-----------CCCCCCCCCceeecCHHHHhCCCCHHHHHHHHHHHHHH
Confidence 4445 4777652211 11 0000112368999853 335789999999888864
|
| >d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Escherichia coli [TaxId: 562]
Probab=99.55 E-value=4.2e-14 Score=171.59 Aligned_cols=332 Identities=16% Similarity=0.193 Sum_probs=228.2
Q ss_pred CCCCCCCHHHHHHHHHHHhhhcC--CCCCCCcchhhhHHHHHH-HHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhccc
Q psy15216 4 SATTPIDPRVVDKMIPYLRVQFG--NPASRNHIYGWTAEKAIE-KARNEVAQLIYADPREIIWTSGATESNNLAIKGAAH 80 (2602)
Q Consensus 4 a~~~~~p~~v~~a~~~~l~~~~~--~p~~~~~~~~~~~~~~~~-~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~ 80 (2602)
++-..+++.|++++...+.+.|. +|+. .|..|....+.++ -+.++..++||+...+|-. .|++.|+..++.++.
T Consensus 33 aSEN~~S~~v~~a~~S~l~nkYaeG~pg~-Ryy~G~~~iD~iE~la~~ra~~lF~a~~anVqp-~SGs~AN~av~~All- 109 (416)
T d1dfoa_ 33 ASENYTSPRVMQAQGSQLTNKYAEGYPGK-RYYGGCEYVDIVEQLAIDRAKELFGADYANVQP-HSGSQANFAVYTALL- 109 (416)
T ss_dssp TTCCCCCHHHHHHHTSGGGGCCCCEETTE-ESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCC-SSHHHHHHHHHHHHC-
T ss_pred cCcccCCHHHHHHhcCcccCcccCCCCCC-cccCCChhHHHHHHHHHHHHHHHhCCCcceeec-ccCccHHHHHHHHhc-
Confidence 44557899999999988877654 5554 2333444444444 4567778899986555554 566779999999998
Q ss_pred ccccCCCEEEEcCCCCcccHHHHHHH--HhCCcEEEEeccCCCCccChHHHHhhcc-CCceEEEEecccCcccccccHHH
Q psy15216 81 FYKKRGKHIITVQTEHKSVLDSIRKL--ENDGFRVTYLKPKNNGLITLSQLEEKIC-SDTILVSVMLVNNEIGVIQPILE 157 (2602)
Q Consensus 81 ~~~~~gd~Vlv~~~~~~s~~~~~~~~--~~~G~~v~~v~~~~~~~ld~e~l~~~i~-~~tklv~i~~~~npTG~~~~l~~ 157 (2602)
+|||.|+..+..|.+........ .....+...+++++++.+|++++++... .++|+|++..- .....+|+++
T Consensus 110 ---~pGD~Il~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~~~IDyd~l~~~a~~~kPklIi~G~S--~y~r~~d~~~ 184 (416)
T d1dfoa_ 110 ---EPGDTVLGMNLAHGGHLTHGSPVNFSGKLYNIVPYGIDATGHIDYADLEKQAKEHKPKMIIGGFS--AYSGVVDWAK 184 (416)
T ss_dssp ---CTTCEEEEECTTTTCCGGGTCTTSHHHHHSEEEEECBCSSSSBCHHHHHHHHHHHCCSEEEEECS--SCCSCCCHHH
T ss_pred ---CCCCeeeeccccccccccccccccccCceEEEEecccCCccCccHHHHHHHHHHhccceEEeccc--ccccccCHHH
Confidence 99999999999988864422111 1124677778888888899999998875 58899887653 3567889999
Q ss_pred HHHHHHhcCCEEEEeccccccc-----ccccCCCCCccEEEecccc-ccCCCCcEEEEEec---CCCCcccceecCCCcc
Q psy15216 158 IGELCRSKGVIFHCDAAQAVGK-----IDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRR---NPRTRIEAQIHGGGHE 228 (2602)
Q Consensus 158 I~~la~~~g~~livD~a~a~g~-----~~~dl~~~~~D~~~~S~~K-~~Gp~G~G~l~~~~---~~~~~l~~~~~g~~~~ 228 (2602)
+.++|++.|+++++|.+|..|. .|-++. . +|++.+|+|| +.||+| |+++.++ ++.+++....+.+
T Consensus 185 ~reiad~vga~l~~D~aH~~GLIa~g~~~sP~~-~-aDvvt~tThKtlrGPrg-giI~~~~~~~~~~~~i~~avfPg--- 258 (416)
T d1dfoa_ 185 MREIADSIGAYLFVDMAHVAGLVAAGVYPNPVP-H-AHVVTTTTHKTLAGPRG-GLILAKGGSEELYKKLNSAVFPG--- 258 (416)
T ss_dssp HHHHHHHTTCEEEEECTTTHHHHHHTSSCCCTT-T-SSEEEEESSSTTCCCSC-EEEEESSCCHHHHHHHHHHHTTT---
T ss_pred HHHHHHhcCceEEcchhhhhcceeccccCCccc-c-cceeeeehhhcccCCCc-eEEEeccchHhHHHHHHhhhCcc---
Confidence 9999999999999999997653 333333 2 5999999999 778996 8888764 2333443322211
Q ss_pred ccccccCcchhHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEc--ccChhH
Q psy15216 229 YGLRSGTLATHQIVGMGEAFRL-ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN--FIEGES 305 (2602)
Q Consensus 229 ~~~~~gt~~~~~~~al~~al~~-~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~--~~~~~~ 305 (2602)
..|.|..+.+++...++.. ....+....++..++++.|.+.|.+ .|+.++...+. .+.+.+.+. +.++..
T Consensus 259 ---~qggp~~~~iaa~Aval~Ea~~~~fk~Y~~qvv~NA~~La~~L~~--~G~~iv~ggTd--nHlvlvdl~~~~~~G~~ 331 (416)
T d1dfoa_ 259 ---GQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLE--RGYKVVSGGTD--NHLFLVDLVDKNLTGKE 331 (416)
T ss_dssp ---TCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHH--TTCEEGGGSCS--SSEEEEECGGGTCCHHH
T ss_pred ---cccCccHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHh--CCcccccCCCC--CceeEEEecccCCCHHH
Confidence 2356777888888788874 3345678889999999999999988 69999864333 344455553 234455
Q ss_pred HHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecC----CCCCHHHHHHHHHHHHhh
Q psy15216 306 LLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIG----RFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 306 ~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~----~~~t~edid~li~~L~~~ 369 (2602)
....| .||.+..-. .|. +.........|||+.. .-..++|+..+.+.|.+.
T Consensus 332 a~~~Le~~gI~~Nkn~--iP~-----------d~~~~~~~SGiRiGT~a~TtrG~~e~d~~~iA~~I~~~ 388 (416)
T d1dfoa_ 332 ADAALGRANITVNKNS--VPN-----------DPKSPFVTSGIRVGTPAITRRGFKEAEAKELAGWMCDV 388 (416)
T ss_dssp HHHHHHHTTEECEECC--CTT-----------CSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCeEEeCCc--CCC-----------CCCCCCCCCceEeCCHHHHhCCCCHHHHHHHHHHHHHH
Confidence 55555 588775221 111 0000112368999853 234789999998888764
|
| >d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-lyase (CYS3) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.54 E-value=2.7e-14 Score=176.55 Aligned_cols=308 Identities=15% Similarity=0.148 Sum_probs=198.6
Q ss_pred CcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHHHH-HhCC
Q psy15216 32 NHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDG 110 (2602)
Q Consensus 32 ~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~-~~~G 110 (2602)
.|.|++...+..+.+++.++++.|.. ..++.+|+..|+..++ ++. .+||+|+++...|.......... .+.|
T Consensus 46 ~y~YsR~gnPT~~~lE~~la~LE~~~--~a~~~sSGmaAi~~~l-~~l----~~gd~iv~~~~~yg~t~~~~~~~l~~~g 118 (393)
T d1n8pa_ 46 TYEYSRSQNPNRENLERAVAALENAQ--YGLAFSSGSATTATIL-QSL----PQGSHAVSIGDVYGGTHRYFTKVANAHG 118 (393)
T ss_dssp SCCBTTTCCHHHHHHHHHHHHHTTCS--EEEEESCHHHHHHHHH-HTS----CSSCEEEEESSCCHHHHHHHHHTSTTTC
T ss_pred CeeeeCCCChHHHHHHHHHHHHhCCc--eEEEecCchhHHHhhh-hcc----cCCCeeeeeeeecccchhhhhhhhhccc
Confidence 45677766778899999999999864 5566777778887655 444 58999999999999987777665 6678
Q ss_pred cEEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHH----hcCCEEEEecccccccccccCCC
Q psy15216 111 FRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCR----SKGVIFHCDAAQAVGKIDINIQN 186 (2602)
Q Consensus 111 ~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~----~~g~~livD~a~a~g~~~~dl~~ 186 (2602)
+++.+++. +.++++++++++|++|++..|.||+..+.|+++|+++|| ++|++++||.+.+.+... +.-+
T Consensus 119 i~~~~~~~------~~~~~~~~i~~~t~lv~~EspsNP~l~v~Di~~ia~~a~~~~~~~g~~lvVDnT~atP~~~-~Pl~ 191 (393)
T d1n8pa_ 119 VETSFTND------LLNDLPQLIKENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPYIS-NPLN 191 (393)
T ss_dssp SCCEEESS------HHHHHHHHSCSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEECTTTHHHHC-CGGG
T ss_pred ceeEEeec------chHHHHHHhhhhcceeEecCcchhhhhccchhhhhhhhhhhcccCCceEEEecCccCcccC-Cchh
Confidence 88888752 467899999999999999999999999999999999999 678999999998766532 2234
Q ss_pred CCccEEEeccccccCCCC---cEEEEEecC-CCCcccceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHH
Q psy15216 187 YKVDLMSFSAHKIYGPKG---IGALYIRRN-PRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRI 262 (2602)
Q Consensus 187 ~~~D~~~~S~~K~~Gp~G---~G~l~~~~~-~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~ 262 (2602)
+|+|+++.|.+|.++..| .|.++.+++ +.++++... ....+.++....+.+...++- +..+.++.
T Consensus 192 ~GADiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~l~~~~-------~~~G~~~~p~~a~ll~rgl~T----l~lR~~~~ 260 (393)
T d1n8pa_ 192 FGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQ-------NAIGAIPSPFDAWLTHRGLKT----LHLRVRQA 260 (393)
T ss_dssp GTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHH-------HHHCCCCCHHHHHHHHHHHTT----HHHHHHHH
T ss_pred hCCCEEEEccccccCCCCccccceeeecchhHHHHHHHHH-------hhcCCCCChHHHHHHHhCCcc----hhhHHHHH
Confidence 689999999999776665 576666543 333343211 122344555555545455543 34455555
Q ss_pred HHHHHHHHHHHhhccCceE-EeCC--CCC-------------CCCceEEEEEccc--ChhHHHHHhC--CeEEcccccCC
Q psy15216 263 LFLQKRLYNGLMESIEEIY-INGD--MNN-------------RIPHNLNISFNFI--EGESLLMAIK--DIAVSSGSACT 322 (2602)
Q Consensus 263 ~~l~~~l~~~L~~~~~g~~-l~~~--~~~-------------~~~~~~~~~~~~~--~~~~~~~~L~--gI~v~~g~~~~ 322 (2602)
.+++..+.+.|.+..+.+. ++-| +++ .....+.|.+.+. ....+++.|+ .+..+-|...+
T Consensus 261 ~~nA~~lA~~L~~~~~~V~~V~yP~l~~~~~~~~a~~~~~~~~~G~~~sf~l~~~~~~~~~f~~~l~l~~~~~SlGg~~S 340 (393)
T d1n8pa_ 261 ALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGGAEAASKFASSTRLFTLAESLGGIES 340 (393)
T ss_dssp HHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSCHHHHHHHHHHCSSSEECSCCCCSSC
T ss_pred HHHHHHHHHHHHhccCcEEEEecccccccccchhhhhccccCCCCceEEEEEeCCHHHHHHHHHhCCcceecccCCCcCc
Confidence 6666666666654223333 2211 111 0122344444321 1345667664 33333332211
Q ss_pred ---CCC-----CChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHh
Q psy15216 323 ---SAS-----LEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 368 (2602)
Q Consensus 323 ---~~~-----~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~ 368 (2602)
++. ..+.......|++ ++.||||+|..+.++-++.+-++|++
T Consensus 341 Li~~p~~~~h~~~~~~~r~~~gi~----~~liRlSvGlE~~~DLi~Dl~~AL~~ 390 (393)
T d1n8pa_ 341 LLEVPAVMTHGGIPKEAREASGVF----DDLVRISVGIEDTDDLLEDIKQALKQ 390 (393)
T ss_dssp EEECTTTTTSCSSCTTTTTTTSCC----TTEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred eEeCchhhccccCCHHHHHhcCCC----cCEEEEEeccCCHHHHHHHHHHHHHH
Confidence 110 0001111233443 37899999987776666777777764
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Probab=99.54 E-value=2.4e-14 Score=183.62 Aligned_cols=318 Identities=12% Similarity=0.062 Sum_probs=192.8
Q ss_pred CCCCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhC-C-----CCCcE--EEeCCHHHHHHHHHH
Q psy15216 5 ATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIY-A-----DPREI--IWTSGATESNNLAIK 76 (2602)
Q Consensus 5 ~~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g-~-----~~~~I--v~t~g~T~al~~~~~ 76 (2602)
+..|.++.|.++......... . .+ +|.+.....++|+++++++. . .++.+ +.+.+++.++..++.
T Consensus 44 g~~~~~~~V~~A~~~l~~~~~---~--~~--~Y~p~~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (412)
T d1yaaa_ 44 GKPWVLPSVKAAEKLIHNDSS---Y--NH--EYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAK 116 (412)
T ss_dssp SCBCCCHHHHHHHHHHHTCTT---C--CC--CCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhCcc---c--CC--CCCCCCCCHHHHHHHHHHHhcccCccccccceeEEecccchhHHHHHHH
Confidence 344666888877544332211 0 01 12222345677888877652 1 22232 223444544444432
Q ss_pred hcccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccC--CCCccChHHHHhhcc---CCceEEEEecccCcccc
Q psy15216 77 GAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK--NNGLITLSQLEEKIC---SDTILVSVMLVNNEIGV 151 (2602)
Q Consensus 77 ~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~--~~~~ld~e~l~~~i~---~~tklv~i~~~~npTG~ 151 (2602)
.+. ...|||+|++++|.|+.+......+ |++++.++.. .++.++.+.+.+.+. ++++++++++||||||.
T Consensus 117 ~~~--~~~~gd~Vlip~P~~~~y~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~P~NPTG~ 191 (412)
T d1yaaa_ 117 FFS--KFFPDKLVYLSKPTWANHMAIFENQ---GLKTATYPYWANETKSLDLNGFLNAIQKAPEGSIFVLHSCAHNPTGL 191 (412)
T ss_dssp HHH--HHCTTCCEEEEESCCTTHHHHHHTT---TCCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEECSSCTTTCC
T ss_pred HHh--ccCCCCEEecccccCchhHHHHHHc---CCceecccccccccccccchhhhcccccCCCceEEEEecCCCCCccc
Confidence 221 2379999999999999988777665 9999998864 355678888877664 56789999999999999
Q ss_pred ccc---HHHHHHHHHhcCCEEEEeccccccccc------c-------cCCCCCccEEEeccccccCCCC--cEEEEEecC
Q psy15216 152 IQP---ILEIGELCRSKGVIFHCDAAQAVGKID------I-------NIQNYKVDLMSFSAHKIYGPKG--IGALYIRRN 213 (2602)
Q Consensus 152 ~~~---l~~I~~la~~~g~~livD~a~a~g~~~------~-------dl~~~~~D~~~~S~~K~~Gp~G--~G~l~~~~~ 213 (2602)
+++ +++|+++|++++++++.|++|..-... . .......-+++.|++|.++++| +||++++++
T Consensus 192 ~~s~~~~~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~~~~~~~ 271 (412)
T d1yaaa_ 192 DPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYGERVGCFHLALT 271 (412)
T ss_dssp CCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTSCCGGGCEEEEEEECC
T ss_pred cCCHHHHHHHHhhhccCCEEEeecceeeecccCCcccchhhhhhhhhccccCCCeEEEEecCCccccCcCceEEEEEchh
Confidence 998 667888999999999999998532210 0 0111223477889999888888 999999998
Q ss_pred CCCcccceecCCC----ccccccccCcchhHHHHHHHHHH---H---HHHhHHHHHHHHHHHHHHHHHHHhhccC-c-eE
Q psy15216 214 PRTRIEAQIHGGG----HEYGLRSGTLATHQIVGMGEAFR---L---ARIEMKEELKRILFLQKRLYNGLMESIE-E-IY 281 (2602)
Q Consensus 214 ~~~~l~~~~~g~~----~~~~~~~gt~~~~~~~al~~al~---~---~~~~~~~~~~~~~~l~~~l~~~L~~~~~-g-~~ 281 (2602)
.+..+........ ........+++......+..++. + ....++..+++++++++.+.+.|.+... + +.
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~ 351 (412)
T d1yaaa_ 272 KQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTPGNWD 351 (412)
T ss_dssp SCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCT
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCc
Confidence 7765533210000 00001123444444444444444 1 1234667777888888888888876211 1 11
Q ss_pred EeCCCCCCCCceEEEEEcccChhHHHHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHH
Q psy15216 282 INGDMNNRIPHNLNISFNFIEGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKE 358 (2602)
Q Consensus 282 l~~~~~~~~~~~~~~~~~~~~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~ed 358 (2602)
...+ ....|.+.+.+. ++++.| ++|.+.+| .|||++. .+++.
T Consensus 352 ~~~~------~gG~F~~~~ls~-e~~~~L~~e~~V~~~~g---------------------------~Ris~~g-~~~~~ 396 (412)
T d1yaaa_ 352 HIVN------QCGMFSFTGLTP-QMVKRLEETHAVYLVAS---------------------------GRASIAG-LNQGN 396 (412)
T ss_dssp HHHH------CCSSEEECCCCH-HHHHHHHHHHCEECCTT---------------------------SEEEGGG-CCTTT
T ss_pred eeCC------CceEEEecCcCH-HHHHHHHHhCCEEECCC---------------------------CEEEecc-CCHHH
Confidence 1111 111234444433 345555 56655321 4999854 35678
Q ss_pred HHHHHHHHHhh
Q psy15216 359 IDFTIKLLKMK 369 (2602)
Q Consensus 359 id~li~~L~~~ 369 (2602)
|++++++|.++
T Consensus 397 i~~l~~ai~~v 407 (412)
T d1yaaa_ 397 VEYVAKAIDEV 407 (412)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999864
|
| >d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=99.54 E-value=1.5e-13 Score=169.60 Aligned_cols=307 Identities=15% Similarity=0.107 Sum_probs=201.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHHH-HhCCc
Q psy15216 1429 HIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDGF 1507 (2602)
Q Consensus 1429 ~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~-~~~G~ 1507 (2602)
+.|++........++++++++-|.. ..+++++|..|+..++.++. ++||+|+++..-|.......... .+.|+
T Consensus 59 ~~Y~R~~nPt~~~LE~~la~LEgg~--~a~~~sSGMaAi~~~l~~l~----~~Gd~iv~~~~~Yg~t~~l~~~~~~~~gi 132 (398)
T d1qgna_ 59 FEYGRYGNPTTVVLEEKISALEGAE--STLLMASGMCASTVMLLALV----PAGGHIVTTTDCYRKTRIFIETILPKMGI 132 (398)
T ss_dssp CCBGGGCCHHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHHS----CSSCEEEEETTSCHHHHHHHHHTGGGGTC
T ss_pred ceecCCCChHHHHHHHHHHHHhCCc--eEEEecCcchHHHHHHhhcc----cccccccccccccchhhhhhccccccccc
Confidence 4445545566788999999999954 67889999999999999987 89999999999999987776654 55689
Q ss_pred EEEEeccCCCCCcChh-HHHhhccCCceEEEEeccccccccccChHHHHHHhhhcCCEEEEecccccCcccccCCCCCcc
Q psy15216 1508 RVTYLKPKNNGLITLS-QLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVD 1586 (2602)
Q Consensus 1508 ~v~~v~~~~~~~id~d-~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D 1586 (2602)
++.+++.. +.+ ..++.+.++|++|++..|+||+..+.|+++|+++||++|++++||.+-+.+... ..-++|+|
T Consensus 133 ~~~~~~~~-----~~~~~~~~~~~~~t~~v~~EspsNP~l~v~Di~~ia~ia~~~g~~~vVDnT~atP~~~-~Pl~~GaD 206 (398)
T d1qgna_ 133 TATVIDPA-----DVGALELALNQKKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQ-KALALGAD 206 (398)
T ss_dssp EEEEECSS-----CHHHHHHHHHHSCEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTC-CTTTTTCS
T ss_pred cccccccc-----chhhhhhhhccccceEEEccCccccccccchHHHHHHHHhhcCCEEEecceeeccccC-CchhhCCC
Confidence 99888642 344 444566899999999999999999999999999999999999999987655533 23357899
Q ss_pred EEEEccccccCCCc---eEEEEEecCCCCccccccccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15216 1587 LMSFSAHKIYGPKG---IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQK 1663 (2602)
Q Consensus 1587 ~~v~S~~K~~gp~G---~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~ 1663 (2602)
+++.|..|+++..| .|.+..++++...++... ....++.++...+.+..+++- +.-++++..+.+.
T Consensus 207 iVihS~TKy~~Ghsdv~~G~v~~~~~~~~~~~~~~-------~~~G~~l~p~~a~ll~rgl~T----L~lRm~~~~~nA~ 275 (398)
T d1qgna_ 207 LVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLH-------HILGGALNPNAAYLIIRGMKT----LHLRVQQQNSTAL 275 (398)
T ss_dssp EEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHHH-------HHHCCCCCHHHHHHHHHHGGG----HHHHHHHHHHHHH
T ss_pred EEEEechhhcCcccceeehhhcchhhhhhhhhhhc-------ccCCCcCCHHHHHHHHhcchH----HHHHHHHHHHHHH
Confidence 99999999665444 566666655444433221 111234444444444344442 4556667777777
Q ss_pred HHHHHHhhcCCcEE-EeCCC--CC---------CCCceEEEEEecC-C---cHHHHHhcC--CEEEccccccCCC-----
Q psy15216 1664 RLYNGLMESIEEIY-INGDM--NN---------RIPHNLNISFNFI-E---GESLLMAIK--DIAVSSGSACTSA----- 1720 (2602)
Q Consensus 1664 ~l~~~L~~~~~gl~-i~~~~--~~---------~~~~~~~~~~~~~-~---~~~~~~~L~--gI~v~~g~~~~~~----- 1720 (2602)
.+.+.|.+ .|.+. +.-|. ++ ....+..++|... + ...|++.|+ .+..+-|....--
T Consensus 276 ~lA~~L~~-hp~V~~V~yPgL~s~p~~~~~~~~~~g~g~~~sf~~~g~~~~a~~f~~~L~l~~~a~SlGg~~SLi~~p~~ 354 (398)
T d1qgna_ 276 RMAEILEA-HPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDLLTTAKFVDALKIPYIAPSFGGCESIVDQPAI 354 (398)
T ss_dssp HHHHHHHT-CTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCHHHHHHHHHHCSSSEECSCCCSSSCEEECHHH
T ss_pred HHHHHHHh-CCCeeecCCCCCCCCcchhhhhhhcCCCCceeeeeecCCHHHHHHHHHcCCcceeeeCCCCCcceeeCcch
Confidence 77888876 67764 33221 11 0111334444322 2 235666663 2333323322110
Q ss_pred ---CCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHH
Q psy15216 1721 ---SLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLK 1763 (2602)
Q Consensus 1721 ---~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~ 1763 (2602)
...+.-.....|+++ +.||||+|..+.++-++.+-++|+
T Consensus 355 ~th~~~~~~~~~~~Gi~~----~liRlSvGlEd~eDLi~Dl~~AL~ 396 (398)
T d1qgna_ 355 MSYWDLSQSDRAKYGIMD----NLVRFSFGVEDFDDLKADILQALD 396 (398)
T ss_dssp HHSTTSCHHHHHTTTCCS----SEEEEECCSSCHHHHHHHHHHHHH
T ss_pred hccccCCHHHHHhcCCCc----CEEEEEeccCCHHHHHHHHHHHHh
Confidence 011222334456664 899999998655544444445544
|
| >d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL2 [TaxId: 5722]
Probab=99.54 E-value=2.6e-13 Score=164.80 Aligned_cols=298 Identities=17% Similarity=0.156 Sum_probs=194.7
Q ss_pred HHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHH-HHhCCcEEEEeccCCCCC
Q psy15216 1441 KARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDGFRVTYLKPKNNGL 1519 (2602)
Q Consensus 1441 ~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~-~~~~G~~v~~v~~~~~~~ 1519 (2602)
.++++++.+-|.. ..+.+++|..|+..++++++ ++||+|+++..-|.......+. +.+.|+++.+++..
T Consensus 2 aLE~~la~Leg~~--~a~~~sSGMaAi~~~l~~ll----~~Gd~iv~~~~~Yg~t~~~~~~~l~~~gi~~~~~d~~---- 71 (331)
T d1pffa_ 2 ALEGKIAKLEHAE--ACAATASGMGAIAASVWTFL----KAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDMA---- 71 (331)
T ss_dssp HHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHC----CTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT----
T ss_pred HHHHHHHHHhCCC--eEEEECCHHHHHHHHHHHHh----CCCCEEEEeCCCchHHHHHHHHHHHhcCeEEEEeccc----
Confidence 4678999999854 67888999999999999887 8999999999999887777654 46779999999764
Q ss_pred cChhHHHhhccCCceEEEEeccccccccccChHHHHHHh-hhcCCEEEEecccccCcccccCCCCCccEEEEccccccCC
Q psy15216 1520 ITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELC-RSKGVIFHCDAAQAVGKIDINIQNYKVDLMSFSAHKIYGP 1598 (2602)
Q Consensus 1520 id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~~ia-~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v~S~~K~~gp 1598 (2602)
|++.++++++++|++|++..|+||+..+.|++++.+++ +++|+++++|.+-+.+... +.-++|+|+++.|..|+++.
T Consensus 72 -d~~~~~~~i~~~t~~i~~Es~~np~~~v~d~~~~~~~~a~~~~~~~vVDnT~atp~~~-~pl~~GaDiVv~S~TKy~~G 149 (331)
T d1pffa_ 72 -VPGNIEKHLKPNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILT-NPLDLGVDIVVHSATKYING 149 (331)
T ss_dssp -STTHHHHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHHC-CGGGGTCSEEEEETTTTTSS
T ss_pred -chhhHhhhcccccceeeeecccccccccccchhhhhhhhcccCceEEeeccccccccc-cccccCCCEEEecchhhcCC
Confidence 78999999999999999999999999999999999885 6789999999887654422 22356899999999996654
Q ss_pred Cc---eEEEEEecCCCCccccccccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Q psy15216 1599 KG---IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEE 1675 (2602)
Q Consensus 1599 ~G---~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g 1675 (2602)
.| .|.++.+++......... .......++++...+.+..+++- +..++++..+++..+.+.|.+ .|.
T Consensus 150 h~d~~~G~v~~~~~~~~~~~~~~-----~~~~~G~~l~p~~a~ll~rgl~T----l~~Rm~~~~~nA~~lA~~L~~-hp~ 219 (331)
T d1pffa_ 150 HTDVVAGLVCSRADIIAKVKSQG-----IKDITGAIISPHDAWLITRGTLT----LDMRVKRAAENAQKVAEFLHE-HKA 219 (331)
T ss_dssp SSSCCCEEEEECHHHHHHHHHTC-----CCCCCCCCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH-CTT
T ss_pred CCccccccccccccchhhhhhhh-----hhhccCCCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhhh-CCc
Confidence 44 577777754322211100 01112234454444444455553 344556666666677777766 455
Q ss_pred E-EEe--CCCCCC---------CCceEEEEEecCC---cHHHHHhcC--CEEEccccccCC--------CCCChhHHHHH
Q psy15216 1676 I-YIN--GDMNNR---------IPHNLNISFNFIE---GESLLMAIK--DIAVSSGSACTS--------ASLEPSYVLRA 1730 (2602)
Q Consensus 1676 l-~i~--~~~~~~---------~~~~~~~~~~~~~---~~~~~~~L~--gI~v~~g~~~~~--------~~~~~~~~~~~ 1730 (2602)
+ .+. +-+++. ...+..++|.... ...+++.|+ ++.++-|....- ....+......
T Consensus 220 V~~V~yPgl~s~p~~~~~~~~~~~~g~l~sf~l~~~~~~~~f~d~l~lf~~~~SlG~~~SLi~~p~~~~h~~~~~e~~~~ 299 (331)
T d1pffa_ 220 VKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVDGLEKAKKVLDNCHVVSLAVSLGGPESLIQHPASMTHAGVPKEEREA 299 (331)
T ss_dssp CCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECSSHHHHHHHHHTCSSSEECSSCCSSSCEEECHHHHTSTTSCHHHHHH
T ss_pred EEeeccccccCccHHHHHhhcccccCcccceeeccHHHHHHHHHhCCcceecccCCCCceeEeCccccccccCCHHHHHh
Confidence 4 222 211211 1112334443322 234555553 333333332210 01122334455
Q ss_pred cCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1731 LGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1731 ~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
.|+++ +.||||+|..+.++-++.+-++|+.
T Consensus 300 ~Gi~~----~liRlsvGlE~~~DLi~Dl~~AL~~ 329 (331)
T d1pffa_ 300 AGLTD----NLIRLSVGCENVQDIIDDLKQALDL 329 (331)
T ss_dssp TTCCT----TEEEEECCSSCHHHHHHHHHHHHHT
T ss_pred cCCCc----CeEEEEeeeCCHHHHHHHHHHHHHH
Confidence 67764 8999999986665555555555553
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Probab=99.54 E-value=8.8e-15 Score=188.32 Aligned_cols=301 Identities=18% Similarity=0.135 Sum_probs=182.8
Q ss_pred HHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccC--
Q psy15216 1438 AIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK-- 1515 (2602)
Q Consensus 1438 ~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~-- 1515 (2602)
.+.++++.+++++|.+ .++++++||.|+.++++++. ++||+|+.... +.+....+.. .|+.++.+..+
T Consensus 76 t~~~lE~~~a~l~G~e--~al~~~SGt~An~~a~~~l~----~~Gd~Vi~~~~-f~~~~~~i~~---~g~~~~~~~~~~~ 145 (456)
T d1c7ga_ 76 NFYHLEKTVKELFGFK--HIVPTHQGRGAENLLSQLAI----KPGQYVAGNMY-FTTTRFHQEK---NGATFVDIVRDEA 145 (456)
T ss_dssp HHHHHHHHHHHHHCCS--EEEEESSHHHHHHHHHHHHC----CTTEEEEESSC-CHHHHHHHHH---TTEEEEECBCGGG
T ss_pred hHHHHHHHHHHHhCCC--eEEECCCHHHHHHHHHHHhc----CCCCeEecCcc-hHHHHHHHHH---cCceeeecccccc
Confidence 4678999999999965 78999999999999999987 89999987654 4443344433 38887766432
Q ss_pred --------CCCCcChhHHHhhccCC----ceEEEEeccccccc-cccC---hHHHHHHhhhcCCEEEEecccccCccc--
Q psy15216 1516 --------NNGLITLSQLEEKICSD----TILVSVMLVNNEIG-VIQP---ILEIGELCRSKGVIFHCDAAQAVGKID-- 1577 (2602)
Q Consensus 1516 --------~~~~id~d~l~~~i~~~----t~lv~l~~~~n~tG-~~~~---l~~I~~ia~~~gi~vivD~a~~~g~~~-- 1577 (2602)
..+.+|+++|+++|+++ +.++++.+++|+.| .++| +++|.++|++||+++++|+|+.++...
T Consensus 146 ~~~~~~~~~~~~~d~~~le~~I~~~~~~~~~~i~~e~~~n~~gG~~~~~~~l~~i~~~a~~~~~~~~~D~a~~~~~a~~~ 225 (456)
T d1c7ga_ 146 HDASLNLPFKGDIDLNKLATLIKEKGAENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRCVENAYFI 225 (456)
T ss_dssp GCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHH
T ss_pred ccccccCCccccCCHHHHHHHhhhcCCccceeEEeeecccccccceecHHHHHHHHHHHHHcCCEEEEEcchhhcchhhh
Confidence 24679999999999753 45889999999875 4444 778899999999999999998764311
Q ss_pred ----ccCCC-----------CCccEEEEccccccCCCceEEEEEecC-CCCccccc--cccCCccccCCCCCcchhHHHH
Q psy15216 1578 ----INIQN-----------YKVDLMSFSAHKIYGPKGIGALYIRRN-PRTRIEAQ--IHGGGHEYGLRSGTLATHQIVG 1639 (2602)
Q Consensus 1578 ----~~l~~-----------~~~D~~v~S~~K~~gp~G~G~l~~~~~-~~~~l~~~--~~g~~~~~~~~~gt~~~~~~~a 1639 (2602)
..... ..+|++++|+||.++.++.|+++.+++ +.++++.. ..++. ...+..+...+.+
T Consensus 226 ~~~~~~~~~~~i~~i~~~~~~~ad~~s~s~~K~~~~~~GG~i~~~~~~l~~~~r~~~~~~~g~----~~~g~~~~~~~~a 301 (456)
T d1c7ga_ 226 KEQEAGYENVSIKDIVHEMFSYADGCTMSGKKDCLVNIGGFLCMNDEEMFSAAKELVVVYEGM----PSYGGLAGRDMEA 301 (456)
T ss_dssp HHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTCCSSCEEEEESCHHHHHHHHHHHHHHTCC----TTTTTCCHHHHHH
T ss_pred cccccccCCCChhhhccccccccccEEEeccccccccceeEEEcCCHHHHHHHHHhccccCCC----cccchhhHHHHHH
Confidence 11111 126899999999554333388887754 23333221 11111 1123444455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEE----EecCC-----cHHHHHhc---C
Q psy15216 1640 MGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNIS----FNFIE-----GESLLMAI---K 1707 (2602)
Q Consensus 1640 l~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~----~~~~~-----~~~~~~~L---~ 1707 (2602)
+..++.... ..+..++..+..++|.+.|.+ .++.+..+... +...+. ++... ...+...+ .
T Consensus 302 ~a~~l~e~~--~~~~l~~r~~~~~~L~e~L~~--~g~~vv~p~g~---~~v~vda~~~~~~i~~~~~~~~~~~~~l~~~~ 374 (456)
T d1c7ga_ 302 MAIGLREAM--QYEYIEHRVKQVRYLGDKLRE--AGVPIVEPTGG---HAVFLDARRFCPHLTQDQFPAQSLAASIYMET 374 (456)
T ss_dssp HHHHHHHHT--CHHHHHHHHHHHHHHHHHHHH--TTCCBCSSCCS---SEEEEEHHHHCTTSCGGGCHHHHHHHHHHHHH
T ss_pred HHHHHHHhc--CHHHHHHHHHHHHHHHHHHHh--ccCCcccCCCC---cceeEechhhccCCCcccccHHHHHHHHHHHh
Confidence 544444221 123445556677888888987 35444433221 111111 11111 22333333 4
Q ss_pred CEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCC-CCHHHHHHHHHHHHHh
Q psy15216 1708 DIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRF-TTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1708 gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~-~t~edid~li~~L~~~ 1765 (2602)
||...+...+... .. ...+.........+||+++.. .|.++||+++++|++.
T Consensus 375 GIr~~~~g~~~~~-~~-----~~~g~~~~~~~e~vRLaip~~~~T~e~iD~Vae~i~~v 427 (456)
T d1c7ga_ 375 GVRSMERGIVSAG-RS-----KETGENHRPKLETVRLTIPRRVYTYAHMDVVADGIIKL 427 (456)
T ss_dssp SEECEEESHHHHC-BC-----SSSCCBCCCSCCEEEEECCTTSCCHHHHHHHHHHHHHH
T ss_pred CeeecccCccccc-cC-----CcccCccCCccceEEEecCcccCCHHHHHHHHHHHHHH
Confidence 6643321111000 00 001111112235799998743 3999999999999974
|
| >d1l5pa_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Trichomonas vaginalis [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: 2Fe-2S ferredoxin-like family: 2Fe-2S ferredoxin-related domain: 2Fe-2S ferredoxin species: Trichomonas vaginalis [TaxId: 5722]
Probab=99.53 E-value=1.5e-15 Score=146.75 Aligned_cols=67 Identities=21% Similarity=0.456 Sum_probs=61.9
Q ss_pred cccccCCCchHHHHHhhcCcc-cccccccccccCCceEEEcCCCCcCCCCCHHHHHHhcccCCCCCCCccCCC
Q psy15216 2531 AIFNENSGISLCDALLKNSIF-IEHACEKSCACATCHVIIREGFNEINKANEVEEDMLNKAWGLEENSRLSCQ 2602 (2602)
Q Consensus 2531 ~~ve~~~g~~~~~~~~~~~~~-~~~~c~g~~~c~tch~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~srl~cq 2602 (2602)
+++++..|.+||++++++|++ |.+.|||.++|+||||+|.++ .+++++++|.+||+ ++.++||||||
T Consensus 12 ~~i~~~~G~tLl~al~~~gi~~i~~~CgG~~~C~tC~v~v~~g--~~~~~~~~E~~~l~---~~~~~~RLaCQ 79 (93)
T d1l5pa_ 12 KQLKFEDDQTLFTVLTEAGLMSADDTCQGNKACGKCICKHVSG--KVAAAEDDEKEFLE---DQPANARLACA 79 (93)
T ss_dssp EEEECCTTEEHHHHHHTTTSSCCTTSCSSSSSSCCCEEEEEES--CCCCCCHHHHHHHT---TSCTTEEEGGG
T ss_pred EEEEeCCCchHHHHHHHhCCCCccccccCCCEeCccEEEEcCC--ccCCCChHHHHHhh---ccCCCcEEEEE
Confidence 778899999999999999995 999999999999999999987 58999999999996 46789999999
|
| >d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: O-acetyl-L-homoserine sulfhydrylase species: Thermus thermophilus [TaxId: 274]
Probab=99.53 E-value=9.6e-13 Score=163.15 Aligned_cols=305 Identities=15% Similarity=0.136 Sum_probs=197.7
Q ss_pred HHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHHH-HhCCcEEEEecc
Q psy15216 1436 EKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDGFRVTYLKP 1514 (2602)
Q Consensus 1436 ~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~-~~~G~~v~~v~~ 1514 (2602)
......+++.|+.+-|.. ..+.++++-.|+..++.+++ ++||+|+++..-|.+........ .+.|+.+.+++.
T Consensus 57 nPT~~~LE~~la~LE~~~--~a~~~~SGmaAi~~~~~~l~----~~gd~il~~~~~Yg~t~~l~~~~~~~~gi~~~~~d~ 130 (421)
T d2ctza1 57 NPTVDVLEKRLAALEGGK--AALATASGHAAQFLALTTLA----QAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSR 130 (421)
T ss_dssp CHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHC----CTTCEEEECSCCCHHHHHHHHTHHHHTTCEEEECCT
T ss_pred CHHHHHHHHHHHHHhCCC--eEEEecChHHHHHHHHHhhc----ccccceeecCCcCCchhHHHHHHHhhccccceeccc
Confidence 345778899999999864 67788999999999999987 89999999999999988777644 677999998864
Q ss_pred CCCCCcChhHHHhhccCCceEEEEeccccccccccChHHHHHHhhhcCCEEEEeccccc-CcccccCCCCCccEEEEccc
Q psy15216 1515 KNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAV-GKIDINIQNYKVDLMSFSAH 1593 (2602)
Q Consensus 1515 ~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~~ia~~~gi~vivD~a~~~-g~~~~~l~~~~~D~~v~S~~ 1593 (2602)
+ -..+.+++.++++|++|++..|+||+..+.|+++|+++||++|+++++|.+-+. +.. ...-++|+|+++.|..
T Consensus 131 ~----~~~~~~~~~~~~~t~li~~EtpsNP~l~v~Di~~i~~iA~~~g~~~vvDnT~a~tP~~-~~Pl~~GaDiVvhS~T 205 (421)
T d2ctza1 131 E----ERPEEFLALTDEKTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGMGGYL-LRPLAWGAALVTHSLT 205 (421)
T ss_dssp T----CCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGGGGTS-CCGGGGTCSEEEEETT
T ss_pred c----cCcchhccccCCCceEEEEcCCCcceeEecchHHHHHHHHhcCCceEeccccccccee-ccccccCCcEEEEech
Confidence 3 145677888999999999999999999999999999999999999999999763 432 2223578999999999
Q ss_pred cccCCCc---eEEEEEecCCCC-ccccc--------cccCCcc----------------ccCCCCCcchhHHHHHHHHHH
Q psy15216 1594 KIYGPKG---IGALYIRRNPRT-RIEAQ--------IHGGGHE----------------YGLRSGTLATHQIVGMGEAFR 1645 (2602)
Q Consensus 1594 K~~gp~G---~G~l~~~~~~~~-~l~~~--------~~g~~~~----------------~~~~~gt~~~~~~~al~~aL~ 1645 (2602)
|+++..| .|.++.+++... ..+.. +.+-... .+...++.++...+-+..+|+
T Consensus 206 Kyl~GHsD~l~G~vv~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~sP~~a~l~~rgl~ 285 (421)
T d2ctza1 206 KWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARVDGLRDQGQALGPFEAWVVLLGME 285 (421)
T ss_dssp TTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHT
T ss_pred hhccCCCCeEEEEEEcCCcchhhhcccccccCCchhhhhhHHHHHhccHHHHHHHHHHHHHhccCCCCHHHHHHHhcCCc
Confidence 9766555 677777765332 11110 0000000 000122333333333323333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEE-EeCCC--CC----------CCCceEEEEEecCCc----HHHHHhcC-
Q psy15216 1646 LARIEMKEELKRILFLQKRLYNGLMESIEEIY-INGDM--NN----------RIPHNLNISFNFIEG----ESLLMAIK- 1707 (2602)
Q Consensus 1646 ~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~-i~~~~--~~----------~~~~~~~~~~~~~~~----~~~~~~L~- 1707 (2602)
-+.-++++..+.+..+.+.|.+ .|.+. +.-|. ++ ....+..++|..... ..|+..|+
T Consensus 286 ----TL~lRm~~~~~nA~~vA~~L~~-hp~V~~V~yPgL~s~p~~~~a~~~~~g~~G~~~sf~l~~~~~~a~~f~~~L~l 360 (421)
T d2ctza1 286 ----TLSLRAERHVENTLHLAHWLLE-QPQVAWVNYPGLPHHPHHDRAQKYFKGKPGAVLTFGLKGGYEAAKRFISRLKL 360 (421)
T ss_dssp ----THHHHHHHHHHHHHHHHHHHHT-CTTEEEEECTTSTTCTTHHHHHHHHTTCCCSEEEEEETTHHHHHHHHHHTCSS
T ss_pred ----chhhHHHHHHHHHHHHHhhhcc-CCCeeEEecCCcCCCccHHHHHHhcCCCCceEEEEEecCCHHHHHHHHHcCCc
Confidence 2456677778888888888887 67773 43221 11 001133455543222 34666663
Q ss_pred -CEEEccccccC----C----CCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1708 -DIAVSSGSACT----S----ASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1708 -gI~v~~g~~~~----~----~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
.+..+-|.... + ....+.......|+++ +.||||+|.. |.+.+++-|++
T Consensus 361 ~~~a~SlGg~eSLi~~pa~~th~~~~~e~r~~~GI~~----~liRlSvGlE----d~eDLi~DL~q 418 (421)
T d2ctza1 361 ISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSP----EMVRLSVGLE----HVEDLKAELKE 418 (421)
T ss_dssp SEECSCCCCSSCEEECGGGTTTTTSCHHHHHHHTCCT----TEEEEECCSS----CHHHHHHHHHH
T ss_pred CeeccccccccceeeCcccccchhCCHHHHHhcCCCc----CeEEEEeccC----CHHHHHHHHHH
Confidence 22333232111 0 0112333445677775 8999999974 44445544443
|
| >d1nwba_ b.124.1.1 (A:) Hypothetical protein Aq_1857 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: HesB-like domain superfamily: HesB-like domain family: HesB-like domain domain: Hypothetical protein Aq 1857 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.52 E-value=1e-15 Score=152.09 Aligned_cols=83 Identities=29% Similarity=0.390 Sum_probs=77.2
Q ss_pred hhccHHHHHHHHHHHHhcCC-CceEEEEEeccCCCcceeeeeeccccCCCCeEEEeCCEEEEEecCccccccccccccch
Q psy15216 1864 ELVTKKAAKYINKYIQKRGK-GIGLRLGVYNRGCSGLSYKLEYVDEKRKEDQVFKLNGVQIFINEKDLLYFNDNFIQKSK 1942 (2602)
Q Consensus 1864 ~l~t~~A~~~i~~~~~~~~~-~~~lr~~v~~~GC~G~~Y~~~~~~~~~~~D~~~~~~~~~v~vd~~s~~~l~~~~~~~~~ 1942 (2602)
+.+|++|+++|++++++++. ..+|||+|++|||+||+|.|+|++++.++|.+++.+|++|+||+.|++||.|..+||.+
T Consensus 10 i~iT~~A~~~i~~l~~~~~~~~~~lRi~v~~gGC~G~~Y~l~~~~~~~~~D~v~~~~g~~i~id~~s~~~L~G~~IDy~~ 89 (101)
T d1nwba_ 10 FKVTDKAVEEIKKVAQENNIENPILRIRVVPGGCSGFQYAMGFDDTVEEGDHVFEYDGVKVVIDPFSMPYVNGAELDYVV 89 (101)
T ss_dssp CEECHHHHHHHHHHHHTTTCSSCEEEECCCCCCTTCCCCCCCEECSCCSSCCCCCCSSSEEEECTTTGGGSTTCEEEEEE
T ss_pred EEECHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCceeEEEeeccccccCceEEecCCeeEEECHHHHhHhCCCEEEEee
Confidence 56999999999999987764 67999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhH
Q psy15216 1943 IDQD 1946 (2602)
Q Consensus 1943 ~~~~ 1946 (2602)
...+
T Consensus 90 ~~~~ 93 (101)
T d1nwba_ 90 DFMG 93 (101)
T ss_dssp ETTE
T ss_pred cCCC
Confidence 7544
|
| >d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL1 [TaxId: 5722]
Probab=99.52 E-value=1.2e-12 Score=162.09 Aligned_cols=309 Identities=17% Similarity=0.159 Sum_probs=205.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHH-HHHhCCcE
Q psy15216 1430 IYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIR-KLENDGFR 1508 (2602)
Q Consensus 1430 ~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~-~~~~~G~~ 1508 (2602)
.|++........+++.++++-|.. ..+.++|+..|+..++.++. ++||+|++++.-|........ .+.+.|+.
T Consensus 52 ~YsR~~nPT~~~le~~la~LEg~~--~a~~~sSGmaAi~~~~l~l~----~~gd~vv~~~~~yg~t~~~~~~~~~~~gi~ 125 (394)
T d1e5ea_ 52 IYTRLGNPTVSNLEGKIAFLEKTE--ACVATSSGMGAIAATVLTIL----KAGDHLISDECLYGCTHALFEHALTKFGIQ 125 (394)
T ss_dssp CBTTTCCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHC----CTTCEEEEESCCCHHHHHHHHTHHHHTTCE
T ss_pred eecCCCCHHHHHHHHHHHHHhCCc--ceeeeccchHHHHHHHHhhc----ccccccccccceeehhhHhHHHHhhcccee
Confidence 344444456788999999999964 67788999999999998887 899999999999988766655 44677999
Q ss_pred EEEeccCCCCCcChhHHHhhccCCceEEEEeccccccccccChHHHHHHhh-hcCCEEEEecccccCcccccCCCCCccE
Q psy15216 1509 VTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCR-SKGVIFHCDAAQAVGKIDINIQNYKVDL 1587 (2602)
Q Consensus 1509 v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~~ia~-~~gi~vivD~a~~~g~~~~~l~~~~~D~ 1587 (2602)
+.+++.. |+++++++++++|++|++..|.||+..+.|++++.++++ ++|+++++|.+-+.+... +.-++|+|+
T Consensus 126 ~~~~d~~-----d~~~~~~~i~~~t~lv~~Etp~NP~l~v~Di~~~~~~~~~~~g~~vvvDnT~atP~~~-~Pl~~GaDi 199 (394)
T d1e5ea_ 126 VDFINTA-----IPGEVKKHMKPNTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFCSPMIT-NPVDFGVDV 199 (394)
T ss_dssp EEEECTT-----STTHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHTSTTCEEEEECTTTCTTTC-CGGGGTCSE
T ss_pred eeccCCC-----CHHHHHHhhcccccEEEEeccCCcceeeehhhhhhhccccccCeEEEecCcccCcccC-CchhcCCCE
Confidence 9999754 678999999999999999999999999999999988665 578999999987665533 233578999
Q ss_pred EEEccccccCCCc---eEEEEEecCCCCccccccccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15216 1588 MSFSAHKIYGPKG---IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKR 1664 (2602)
Q Consensus 1588 ~v~S~~K~~gp~G---~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~ 1664 (2602)
++.|..|+++..| .|.++.+++.....+.... .....+++++...+-+..+|+- +.-++++..+.+..
T Consensus 200 VvhS~TKy~~GhsDv~~G~v~~~~~~~~~~~~~~~-----~~~~G~~lsp~~a~ll~rgl~T----L~lRm~r~~~nA~~ 270 (394)
T d1e5ea_ 200 VVHSATKYINGHTDVVAGLICGKADLLQQIRMVGI-----KDITGSVISPHDAWLITRGLST----LNIRMKAESENAMK 270 (394)
T ss_dssp EEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCC-----CCCCCCCCCHHHHHHHHHHHTT----HHHHHHHHHHHHHH
T ss_pred EEechhhhcCCCcccccccccchhhHHHHHHHHHH-----HHhhCCCCChHHHHHHHhhchh----HHHHHHHHHHHHHH
Confidence 9999999766555 6777777654332221100 1122334555444444444442 45566677777888
Q ss_pred HHHHHhhcCCcEE-EeCCC--CCC---------CCceEEEEEecCCc----HHHHHhcC--CEEEccccccC---C----
Q psy15216 1665 LYNGLMESIEEIY-INGDM--NNR---------IPHNLNISFNFIEG----ESLLMAIK--DIAVSSGSACT---S---- 1719 (2602)
Q Consensus 1665 l~~~L~~~~~gl~-i~~~~--~~~---------~~~~~~~~~~~~~~----~~~~~~L~--gI~v~~g~~~~---~---- 1719 (2602)
+.+.|.+ .|.+. +.-|. ++. ...+..++|..... ..+++.|+ .+.++-|.... .
T Consensus 271 lA~~L~~-hp~V~~V~yPgl~s~p~~~~~~~~~~~~G~~~sf~~~~~~~~a~~f~~~l~l~~~a~SlGg~eSLi~~p~~~ 349 (394)
T d1e5ea_ 271 VAEYLKS-HPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKSGFEGAKKLLDNLKLITLAVSLGGCESLIQHPASM 349 (394)
T ss_dssp HHHHHHT-CTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETTHHHHHHHHHHTCSSSEESSCCCSSSCEEECGGGT
T ss_pred HHHHHhh-cCCccEEeCCCcccccchhhhhcccccCCCeeeeeccCCHHHHHHHHHhCCccceeeccCCccceeECcccc
Confidence 8888877 67764 33221 110 11133444443222 34666663 22222222111 0
Q ss_pred -CCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1720 -ASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1720 -~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
....+......+|+++ +.||||+|..+.++-++.+-++|+.
T Consensus 350 th~~~~~~~r~~~Gi~~----~liRlSVGlEd~eDLi~Dl~qAl~~ 391 (394)
T d1e5ea_ 350 THAVVPKEEREAAGITD----GMIRLSVGIEDADELIADFKQGLDA 391 (394)
T ss_dssp TTTTSCHHHHHHTTCCT----TEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHhcCCCc----CEEEEEeccCCHHHHHHHHHHHHHH
Confidence 0122334456677774 8999999986655555555555553
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Probab=99.52 E-value=4.3e-14 Score=180.75 Aligned_cols=318 Identities=13% Similarity=0.053 Sum_probs=190.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHh----CC-CCCcEEEeCCHHHH--HHHH
Q psy15216 2 DYSATTPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLI----YA-DPREIIWTSGATES--NNLA 74 (2602)
Q Consensus 2 d~a~~~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~----g~-~~~~Iv~t~g~T~a--l~~~ 74 (2602)
|..+.+++++.|.+++.+.+..... + .|. +.....++|+++++++ +. .+...+.+.+++.+ +.+.
T Consensus 38 d~~g~~~~~~~V~~A~~~~~~~~~~--~--~Y~----p~~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 109 (394)
T d2ay1a_ 38 DATGHTPIMRAVHAAEQRMLETETT--K--TYA----GLSGEPEFQKAMGELILGDGLKSETTATLATVGGTGALRQALE 109 (394)
T ss_dssp CTTSCCCCCHHHHHHHHHHHHHCCC--C--CCC----CSSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHhhCCCC--C--CCC----CCCCCHHHHHHHHHHHhccccccccccceeccCchHHHHHHHH
Confidence 3445567789999998887764211 1 011 1123456677777765 22 12234445555444 4444
Q ss_pred HHhcccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCC--CCccChHHHHhh---ccCCceEEEEecccCcc
Q psy15216 75 IKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKN--NGLITLSQLEEK---ICSDTILVSVMLVNNEI 149 (2602)
Q Consensus 75 ~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~ld~e~l~~~---i~~~tklv~i~~~~npT 149 (2602)
+..+. ++||.|++++|.|+.+...++.+ |++++.++... .+..+.+.+.+. ..++++++++++|||||
T Consensus 110 ~~~~~----~~gd~V~~p~p~~~~y~~~~~~~---g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~NPT 182 (394)
T d2ay1a_ 110 LARMA----NPDLRVFVSDPTWPNHVSIMNFM---GLPVQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLLHGCCHNPT 182 (394)
T ss_dssp HHHHH----CTTCCEEEEESCCHHHHHHHHHH---TCCEEEEECEETTTTEECHHHHHHHHHTCCTTCEEEEESSSCTTT
T ss_pred Hhhhc----CCceEEEEecccccchHHHHHHc---CCEEEEecccchhcccccchhHHHHHhhcccCcEEEEeCCCCCCC
Confidence 44444 89999999999999998888887 99999888643 344555555544 45678899999999999
Q ss_pred ccccc---HHHHHHHHHhcCCEEEEeccccccccc------c---cCCCCCccEEEeccccccCCCC--cEEEEEecCCC
Q psy15216 150 GVIQP---ILEIGELCRSKGVIFHCDAAQAVGKID------I---NIQNYKVDLMSFSAHKIYGPKG--IGALYIRRNPR 215 (2602)
Q Consensus 150 G~~~~---l~~I~~la~~~g~~livD~a~a~g~~~------~---dl~~~~~D~~~~S~~K~~Gp~G--~G~l~~~~~~~ 215 (2602)
|..++ +++|+++|++|+++++.|++|..-... + .......-+++.|++|.++.+| +||+.++....
T Consensus 183 G~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R~G~~~~~~~~~ 262 (394)
T d2ay1a_ 183 GANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIYRERTGCLLALCADA 262 (394)
T ss_dssp CCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCGGGCEEEEEEECSSH
T ss_pred CCCCCHHHHHHHHHHhhcceEEEEEeccchhhcccccccchhhhhhhhhcccccccccccccccCCcccccchhhchhHH
Confidence 99999 667889999999999999998532211 0 0111112366678999777666 89999988765
Q ss_pred CcccceecCCCccccccccCcchhHHHHHHHHHH------HHHHhHHHHHHHHHHHHHHHHHHHhhccCc--eEEeCCCC
Q psy15216 216 TRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFR------LARIEMKEELKRILFLQKRLYNGLMESIEE--IYINGDMN 287 (2602)
Q Consensus 216 ~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~------~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g--~~l~~~~~ 287 (2602)
+...................++......+...+. .....++..++++.++++.+.+.|.+..+. +....+.
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~- 341 (394)
T d2ay1a_ 263 ATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRDLSGSDRFGFVAEH- 341 (394)
T ss_dssp HHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTTHHHHC-
T ss_pred HHHHHhhhhhHhhhcccccchhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceeeECCC-
Confidence 5433211000000000112233223222222222 122345667778888888888888762111 1111111
Q ss_pred CCCCceEEEEEcccChhHHHHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHH
Q psy15216 288 NRIPHNLNISFNFIEGESLLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIK 364 (2602)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~ 364 (2602)
.+. |.+.+.+ .+++++| ++|.+.+| .||++.. .++++|+++.+
T Consensus 342 ----~G~-F~~~~ls-~~~~~~L~~~~~V~~~~g---------------------------~Ri~~a~-l~~~~i~~l~~ 387 (394)
T d2ay1a_ 342 ----RGM-FSRLGAT-PEQVKRIKEEFGIYMVGD---------------------------SRINIAG-LNDNTIPILAR 387 (394)
T ss_dssp ----CSS-EEECCCC-HHHHHHHHHHHCEECCTT---------------------------CEEEGGG-CCTTTHHHHHH
T ss_pred ----cee-EEecCcC-HHHHHHHHHhCCEEecCC---------------------------CEEEecC-CCHHHHHHHHH
Confidence 122 2332332 3445555 57766532 4999854 35688999999
Q ss_pred HHHhh
Q psy15216 365 LLKMK 369 (2602)
Q Consensus 365 ~L~~~ 369 (2602)
+|.++
T Consensus 388 ai~~v 392 (394)
T d2ay1a_ 388 AIIEV 392 (394)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99875
|
| >d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Escherichia coli [TaxId: 562]
Probab=99.52 E-value=4.5e-13 Score=165.73 Aligned_cols=223 Identities=13% Similarity=0.108 Sum_probs=167.4
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHH-HHhCCcEEE
Q psy15216 1432 GWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRK-LENDGFRVT 1510 (2602)
Q Consensus 1432 ~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~-~~~~G~~v~ 1510 (2602)
++........+++.++++-|.. ..+.+++|..|+..++.++. ++||+|+++..-|......++. +...|+++.
T Consensus 53 ~R~~nPt~~~le~~la~LEg~~--~a~~~~SGMaAi~~~l~~l~----~~Gd~iv~~~~~Yg~T~~l~~~~l~~~Gi~~~ 126 (391)
T d1cl1a_ 53 GRRGTLTHFSLQQAMCELEGGA--GCVLFPCGAAAVANSILAFI----EQGDHVLMTNTAYEPSQDFCSKILSKLGVTTS 126 (391)
T ss_dssp TTTCCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHC----CTTCEEEEETTSCHHHHHHHHHTGGGGTCEEE
T ss_pred ECCCChhHHHHHHHHHHHhCCc--cEEEeccccceeeehhhccc----CCCCeEEEecccccchhhhhhhcccccccccc
Confidence 3333455788899999999864 68889999999999999987 8999999999999998888765 466799999
Q ss_pred EeccCCCCCcChhHHHhhccCCceEEEEeccccccccccChHHHHHHhhh--cCCEEEEecccccCcccccCCCCCccEE
Q psy15216 1511 YLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRS--KGVIFHCDAAQAVGKIDINIQNYKVDLM 1588 (2602)
Q Consensus 1511 ~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~~ia~~--~gi~vivD~a~~~g~~~~~l~~~~~D~~ 1588 (2602)
+++.. |.++++++++++|++|++..|+||+..+.|+++|+++|++ +|++++||.+-+.+...-+ -++|+|++
T Consensus 127 ~~d~~-----d~~~~~~~i~~~t~~i~~EtpsNP~l~v~Di~~i~~~a~~~~~g~~~vVDnT~atP~~~~P-l~~GaDiv 200 (391)
T d1cl1a_ 127 WFDPL-----IGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKA-LDFGIDVS 200 (391)
T ss_dssp EECTT-----CGGGGGGTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEECTTTTTTSSCG-GGGTCSEE
T ss_pred cccCc-----cccccccccccccceeeecccCcccccccccHHHHHHHHhccCCcEEEEeccccchhhhcc-cccccceE
Confidence 98753 6889999999999999999999999999999999999976 5999999999876654322 24689999
Q ss_pred EEccccccCCCc---eEEEEEecCCCCccccccccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15216 1589 SFSAHKIYGPKG---IGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRL 1665 (2602)
Q Consensus 1589 v~S~~K~~gp~G---~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l 1665 (2602)
+.|..|+++..| .|.++.+++....+.... ....++.++...+.+..+++- +.-++++..+.+..+
T Consensus 201 vhS~TKy~~GhsdvlgG~vv~~~~~~~~~~~~~-------~~~G~~~~p~~a~ll~rgl~T----L~lR~~~~~~nA~~v 269 (391)
T d1cl1a_ 201 IQAATKYLVGHSDAMIGTAVCNARCWEQLRENA-------YLMGQMVDADTAYITSRGLRT----LGVRLRQHHESSLKV 269 (391)
T ss_dssp EEETTTTTTCSSSCCCEEEEECTTTHHHHHHHH-------HHTTCCCCHHHHHHHHHHHTT----HHHHHHHHHHHHHHH
T ss_pred Eeecchhccccccccccceeccccccccchhhh-------hcccccCCchhhhhhhccchh----HHHHHHHHHHHHHHH
Confidence 999999665444 577776665444433221 112334444444334344432 455666677777777
Q ss_pred HHHHhhcCCcEEE
Q psy15216 1666 YNGLMESIEEIYI 1678 (2602)
Q Consensus 1666 ~~~L~~~~~gl~i 1678 (2602)
.+.|.+ .|.+.-
T Consensus 270 A~~L~~-hp~V~~ 281 (391)
T d1cl1a_ 270 AEWLAE-HPQVAR 281 (391)
T ss_dssp HHHHHT-CTTEEE
T ss_pred HHHHHh-cccccc
Confidence 788876 676653
|
| >d1nwba_ b.124.1.1 (A:) Hypothetical protein Aq_1857 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: HesB-like domain superfamily: HesB-like domain family: HesB-like domain domain: Hypothetical protein Aq 1857 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.51 E-value=2e-15 Score=149.99 Aligned_cols=81 Identities=30% Similarity=0.404 Sum_probs=75.9
Q ss_pred hhccHHHHHHHHHHHHhcCC-CeeEEEEEeccccCceeeeeeeccccCCCCEEEEeCCEEEEEeCCccchhhhccccccc
Q psy15216 468 ELVTKKAAKYINKYIQKRGK-GIGLRLGVYNRGCSGLSYKLEYVDEKRKEDQVFKLNGVQIFINEKDLLYFNDNFIQKSK 546 (2602)
Q Consensus 468 ~l~t~~A~~~~~~~~~~~~~-~~~lr~~v~~~GCsg~~y~~~~~~~~~~~D~~~~~~~~~v~vd~~s~~~l~d~~~~~~~ 546 (2602)
+.+|++|+++|++++++++. ..+|||+|++|||+||+|.|+|++++.++|.+++.+|++|+||++|++||.|..+||.+
T Consensus 10 i~iT~~A~~~i~~l~~~~~~~~~~lRi~v~~gGC~G~~Y~l~~~~~~~~~D~v~~~~g~~i~id~~s~~~L~G~~IDy~~ 89 (101)
T d1nwba_ 10 FKVTDKAVEEIKKVAQENNIENPILRIRVVPGGCSGFQYAMGFDDTVEEGDHVFEYDGVKVVIDPFSMPYVNGAELDYVV 89 (101)
T ss_dssp CEECHHHHHHHHHHHHTTTCSSCEEEECCCCCCTTCCCCCCCEECSCCSSCCCCCCSSSEEEECTTTGGGSTTCEEEEEE
T ss_pred EEECHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCceeEEEeeccccccCceEEecCCeeEEECHHHHhHhCCCEEEEee
Confidence 56999999999999987764 67899999999999999999999999999999999999999999999999999999987
Q ss_pred cc
Q psy15216 547 ID 548 (2602)
Q Consensus 547 ~~ 548 (2602)
..
T Consensus 90 ~~ 91 (101)
T d1nwba_ 90 DF 91 (101)
T ss_dssp ET
T ss_pred cC
Confidence 54
|
| >d1i7ha_ d.15.4.1 (A:) Adrenodoxin-like ferredoxin {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: 2Fe-2S ferredoxin-like family: 2Fe-2S ferredoxin-related domain: Adrenodoxin-like ferredoxin species: Escherichia coli [TaxId: 562]
Probab=99.50 E-value=4.9e-15 Score=148.99 Aligned_cols=74 Identities=62% Similarity=1.130 Sum_probs=70.8
Q ss_pred cccccccCCCchHHHHHhhcCcccccccccccccCCceEEEcCCCCcCCCCCHHHHHHhcccCCCCCCCccCCC
Q psy15216 2529 NGAIFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVEEDMLNKAWGLEENSRLSCQ 2602 (2602)
Q Consensus 2529 ~~~~ve~~~g~~~~~~~~~~~~~~~~~c~g~~~c~tch~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~srl~cq 2602 (2602)
.++++++..|.+||++++++|++|.+.|||.++|+||||+|.+|+..+++++++|++||+...+..++||||||
T Consensus 14 ~g~~v~~~~G~tLl~aa~~~gi~i~~~CgG~g~CgtC~v~v~~G~~~l~~~~~~E~~~l~~~~~~~~~~RLaCQ 87 (109)
T d1i7ha_ 14 DGAVLEANSGETILDAALRNGIEIEHACEKSCACTTCHCIVREGFDSLPESSEQEDDMLDKAWGLEPESRLSCQ 87 (109)
T ss_dssp TCEEEECCTTCBHHHHHHHTTCCCCCTTSSSSCCSTTEEEEEECGGGSCCCCHHHHHHHTTCTTCCTTEEETTT
T ss_pred CCcEEEeCCCCcHHHHHHHcCCCCCcCCCCcceeCCeEEEeecCccccCCCChHHhhhhhccccCCCCeEEEEe
Confidence 35789999999999999999999999999999999999999999999999999999999998889999999999
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Probab=99.49 E-value=4.3e-14 Score=181.75 Aligned_cols=316 Identities=17% Similarity=0.141 Sum_probs=188.3
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEeccC-
Q psy15216 41 KAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPK- 119 (2602)
Q Consensus 41 ~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~- 119 (2602)
+.+.++++.+|+++|.+ .+++++|+|.|+.+++.++. ++||+|+.... |.+....+. ..|+.++.+..+
T Consensus 75 pt~~~lE~~~a~l~G~e--~al~~~SGt~An~~a~~~l~----~~Gd~Vi~~~~-f~~~~~~i~---~~g~~~~~~~~~~ 144 (456)
T d1c7ga_ 75 ENFYHLEKTVKELFGFK--HIVPTHQGRGAENLLSQLAI----KPGQYVAGNMY-FTTTRFHQE---KNGATFVDIVRDE 144 (456)
T ss_dssp HHHHHHHHHHHHHHCCS--EEEEESSHHHHHHHHHHHHC----CTTEEEEESSC-CHHHHHHHH---HTTEEEEECBCGG
T ss_pred chHHHHHHHHHHHhCCC--eEEECCCHHHHHHHHHHHhc----CCCCeEecCcc-hHHHHHHHH---HcCceeeeccccc
Confidence 45788999999999976 78999999999999999988 89999987653 333322233 348887766432
Q ss_pred ---------CCCccChHHHHhhccCC----ceEEEEecccCccc-cccc---HHHHHHHHHhcCCEEEEeccccccccc-
Q psy15216 120 ---------NNGLITLSQLEEKICSD----TILVSVMLVNNEIG-VIQP---ILEIGELCRSKGVIFHCDAAQAVGKID- 181 (2602)
Q Consensus 120 ---------~~~~ld~e~l~~~i~~~----tklv~i~~~~npTG-~~~~---l~~I~~la~~~g~~livD~a~a~g~~~- 181 (2602)
..+.+|+++|+++|+++ +.++++.+++|+.| .++| +++|.++|++||+.+|+|+++.++...
T Consensus 145 ~~~~~~~~~~~~~~d~~~le~~I~~~~~~~~~~i~~e~~~n~~gG~~~~~~~l~~i~~~a~~~~~~~~~D~a~~~~~a~~ 224 (456)
T d1c7ga_ 145 AHDASLNLPFKGDIDLNKLATLIKEKGAENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRCVENAYF 224 (456)
T ss_dssp GGCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHH
T ss_pred cccccccCCccccCCHHHHHHHhhhcCCccceeEEeeecccccccceecHHHHHHHHHHHHHcCCEEEEEcchhhcchhh
Confidence 24679999999999643 46899999999876 4444 678889999999999999998754311
Q ss_pred -----ccCCC-----------CCccEEEeccccccCCCCcEEEEEecC-CCCccccee--cCCCccccccccCcchhHHH
Q psy15216 182 -----INIQN-----------YKVDLMSFSAHKIYGPKGIGALYIRRN-PRTRIEAQI--HGGGHEYGLRSGTLATHQIV 242 (2602)
Q Consensus 182 -----~dl~~-----------~~~D~~~~S~~K~~Gp~G~G~l~~~~~-~~~~l~~~~--~g~~~~~~~~~gt~~~~~~~ 242 (2602)
..... ..+|++++|++|.++.++.|+++.+++ +.++++... .++. ...|..+...+.
T Consensus 225 ~~~~~~~~~~~~i~~i~~~~~~~ad~~s~s~~K~~~~~~GG~i~~~~~~l~~~~r~~~~~~~g~----~~~g~~~~~~~~ 300 (456)
T d1c7ga_ 225 IKEQEAGYENVSIKDIVHEMFSYADGCTMSGKKDCLVNIGGFLCMNDEEMFSAAKELVVVYEGM----PSYGGLAGRDME 300 (456)
T ss_dssp HHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTCCSSCEEEEESCHHHHHHHHHHHHHHTCC----TTTTTCCHHHHH
T ss_pred hcccccccCCCChhhhccccccccccEEEeccccccccceeEEEcCCHHHHHHHHHhccccCCC----cccchhhHHHHH
Confidence 11111 136899999999665444488877653 333333211 1111 112233333444
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEE----Eccc-----ChhHHHHHh---
Q psy15216 243 GMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNIS----FNFI-----EGESLLMAI--- 310 (2602)
Q Consensus 243 al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~----~~~~-----~~~~~~~~L--- 310 (2602)
++..++. +.......++..++.++|.++|.+ .|+.+..+... +...+. ++.. ....+...+
T Consensus 301 a~a~~l~--e~~~~~~l~~r~~~~~~L~e~L~~--~g~~vv~p~g~---~~v~vda~~~~~~i~~~~~~~~~~~~~l~~~ 373 (456)
T d1c7ga_ 301 AMAIGLR--EAMQYEYIEHRVKQVRYLGDKLRE--AGVPIVEPTGG---HAVFLDARRFCPHLTQDQFPAQSLAASIYME 373 (456)
T ss_dssp HHHHHHH--HHTCHHHHHHHHHHHHHHHHHHHH--TTCCBCSSCCS---SEEEEEHHHHCTTSCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHH--HhcCHHHHHHHHHHHHHHHHHHHh--ccCCcccCCCC---cceeEechhhccCCCcccccHHHHHHHHHHH
Confidence 4433333 222234455666777888899987 35544443322 222221 1111 122333333
Q ss_pred CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCC-CCCHHHHHHHHHHHHhhhh--------hhhhhHhhhh
Q psy15216 311 KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGR-FTTEKEIDFTIKLLKMKEF--------FMSYSEKVLD 381 (2602)
Q Consensus 311 ~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~-~~t~edid~li~~L~~~~~--------~~~y~~~~~~ 381 (2602)
.||...+...+..+ .. ...+.........+|++++. ..|++|||.++++|+++.. .-.|.++++.
T Consensus 374 ~GIr~~~~g~~~~~-~~-----~~~g~~~~~~~e~vRLaip~~~~T~e~iD~Vae~i~~v~~~~~~i~gl~~~~e~~~lr 447 (456)
T d1c7ga_ 374 TGVRSMERGIVSAG-RS-----KETGENHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQHKEDIRGLTFVYEPKQLR 447 (456)
T ss_dssp HSEECEEESHHHHC-BC-----SSSCCBCCCSCCEEEEECCTTSCCHHHHHHHHHHHHHHHTTGGGCCCEEEEECCSSSH
T ss_pred hCeeecccCccccc-cC-----CcccCccCCccceEEEecCcccCCHHHHHHHHHHHHHHHhhhhhcCCceEEeccccce
Confidence 36543211110000 00 00111111123569999863 3499999999999997431 1124556666
Q ss_pred cc
Q psy15216 382 HY 383 (2602)
Q Consensus 382 hy 383 (2602)
||
T Consensus 448 ~f 449 (456)
T d1c7ga_ 448 FF 449 (456)
T ss_dssp HH
T ss_pred ee
Confidence 65
|
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=99.48 E-value=6.2e-14 Score=175.53 Aligned_cols=309 Identities=15% Similarity=0.126 Sum_probs=188.6
Q ss_pred CCCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCC
Q psy15216 1403 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRG 1482 (2602)
Q Consensus 1403 ~~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~g 1482 (2602)
+.+++++++|+.+.. .+.+.|.. .....++++++++++|.+ ++++++|||+|+..++.++. ++|
T Consensus 10 t~p~p~v~~A~~~a~------~g~~~yg~----~p~~~~le~~lA~~~G~~--~~~~~~sGt~A~~~al~a~~----~~g 73 (343)
T d1m6sa_ 10 TKPTEEMRKAMAQAE------VGDDVYGE----DPTINELERLAAETFGKE--AALFVPSGTMGNQVSIMAHT----QRG 73 (343)
T ss_dssp CCCCHHHHHHHHTCC------CCCGGGTC----CHHHHHHHHHHHHHTTCS--EEEEESCHHHHHHHHHHHHC----CTT
T ss_pred CCCCHHHHHHHHhhh------cCCcccCC----CHHHHHHHHHHHHHHCCC--eEEEeCCHHHHHHHHHHHHh----ccC
Confidence 455678898886532 22212221 235788999999999964 78999999999999999887 899
Q ss_pred CEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccCCc------e-EEEEeccccccccccC---hH
Q psy15216 1483 KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDT------I-LVSVMLVNNEIGVIQP---IL 1552 (2602)
Q Consensus 1483 d~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~~t------~-lv~l~~~~n~tG~~~~---l~ 1552 (2602)
|.+++..+.|.++..........+..+..++.+ .+..|++.+++.++..+ . .++...++++.|.+.| +.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 152 (343)
T d1m6sa_ 74 DEVILEADSHIFWYEVGAMAVLSGVMPHPVPGK-NGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIK 152 (343)
T ss_dssp CEEEEETTCHHHHSSTTHHHHHTCCEEEEECEE-TTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHH
T ss_pred Cceeccccccceeeecccccccccceeeccccc-cCccCHHHHHHhhhhhhcccccccccccccccccCCceecCHHHHH
Confidence 999999999887655554554456666666543 45579999999997543 3 5556666677777776 55
Q ss_pred HHHHHhhhcCCEEEEecccccCcccccCCC-----CCccEEEEcccc-ccCCCceEEEEEecCCCCccccccccCCcccc
Q psy15216 1553 EIGELCRSKGVIFHCDAAQAVGKIDINIQN-----YKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIHGGGHEYG 1626 (2602)
Q Consensus 1553 ~I~~ia~~~gi~vivD~a~~~g~~~~~l~~-----~~~D~~v~S~~K-~~gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~ 1626 (2602)
+|.++|++||+++++|+++..+........ ...+..+++.+| ..|+. .|+.+..++......... .
T Consensus 153 ~i~~~~~~~g~~~~~D~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~-------~ 224 (343)
T d1m6sa_ 153 EICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAPV-GSVVVGDRDFIERARKAR-------K 224 (343)
T ss_dssp HHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTCSEEEEESSSTTCCSS-CEEEEECHHHHHHHHHHH-------H
T ss_pred HHHHHHHhcCeEEEeccccccccccccccchhhhccccccccccccccccccc-cccccccHHHHhhhHhhC-------c
Confidence 777788999999999999875432221110 113455566566 55554 466666554332222111 0
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEec--CCcHHHHH
Q psy15216 1627 LRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF--IEGESLLM 1704 (2602)
Q Consensus 1627 ~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~--~~~~~~~~ 1704 (2602)
...++.......+. ..+..... .........++..++.+.+.+ +.+.....+. ..+...+.++. ....++..
T Consensus 225 ~~~~~~~~~~~~~a-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~v~~~~~~~~~~a~~l~~ 298 (343)
T d1m6sa_ 225 MLGGGMRQAGVLAA-AGIIALTK-MVDRLKEDHENARFLALKLKE-IGYSVNPEDV---KTNMVILRTDNLKVNAHGFIE 298 (343)
T ss_dssp HHTCCCSSTHHHHH-HHHHHHHH-SSTTHHHHHHHHHHHHHHHHH-HTCBCCGGGC---CSSEEEEECTTSSSCHHHHHH
T ss_pred ccccccchhHHHHH-hhhhhhhh-hHHHHHHHHHHHHHhhhHHHH-hccCccCCCC---CceEEEEEeCCCcccHHHHHH
Confidence 11122222222222 11111111 112223334444455555554 2333222221 12344444443 34567777
Q ss_pred hc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1705 AI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1705 ~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
.| +||.+++.. .+++|+++++.+|+||||+++++|++.
T Consensus 299 ~L~~~Gi~v~~~~-----------------------~~~iRi~~~~~~t~edid~~v~~l~~v 338 (343)
T d1m6sa_ 299 ALRNSGVLANAVS-----------------------DTEIRLVTHKDVSRNDIEEALNIFEKL 338 (343)
T ss_dssp HHHHHTEECEEEE-----------------------TTEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHCCCEEecCC-----------------------CCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 77 799876432 167999999999999999999999984
|
| >d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=99.45 E-value=1.1e-12 Score=160.83 Aligned_cols=331 Identities=14% Similarity=0.193 Sum_probs=206.5
Q ss_pred CCCCCCCHHHHHHHHHHHhhhc--CCCCCCCcchhhhHHH-HHHHHHHHHHHHhCCCCCc---EEEeCCHHHHHHHHHHh
Q psy15216 4 SATTPIDPRVVDKMIPYLRVQF--GNPASRNHIYGWTAEK-AIEKARNEVAQLIYADPRE---IIWTSGATESNNLAIKG 77 (2602)
Q Consensus 4 a~~~~~p~~v~~a~~~~l~~~~--~~p~~~~~~~~~~~~~-~~~~~r~~lA~~~g~~~~~---Iv~t~g~T~al~~~~~~ 77 (2602)
++-..+++.|++++...+.+.| ++|+. .|..|....+ ...-++++..++||++... =+=..|++.|+..++.+
T Consensus 34 aSEN~~S~~v~~algS~l~nkYaeG~pg~-Ryy~G~~~iD~iE~la~~ra~~lF~~~~a~w~vNVqp~SGs~An~av~~a 112 (463)
T d2a7va1 34 ASENFCSRAALEALGSCLNNKYSEGYPGK-RYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTA 112 (463)
T ss_dssp TTCCCCCHHHHHHHTSGGGTCCCCC-------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHH
T ss_pred ccCCcCCHHHHHHhcchhcccccCCCCCc-cccCCchhHHHHHHHHHHHHHHHhCCCchhccCCccccccHHHHHHHHHH
Confidence 4556789999999988887655 35554 2333333333 3344578889999998762 13445567899999999
Q ss_pred cccccccCCCEEEEcCCCCcccHHHHH-----HHHhCC--cEEEEeccCC-CCccChHHHHhhcc-CCceEEEEecccCc
Q psy15216 78 AAHFYKKRGKHIITVQTEHKSVLDSIR-----KLENDG--FRVTYLKPKN-NGLITLSQLEEKIC-SDTILVSVMLVNNE 148 (2602)
Q Consensus 78 l~~~~~~~gd~Vlv~~~~~~s~~~~~~-----~~~~~G--~~v~~v~~~~-~~~ld~e~l~~~i~-~~tklv~i~~~~np 148 (2602)
+. +|||.|+..+..+.....--. .....| .+...+.+++ ++.+|.+++++... .++++|++-.-.
T Consensus 113 ll----~pgD~Im~l~l~~GGHlshg~~~~~~~~~~~g~~~~~~~Y~~d~~~~~IDyd~~~~~a~~~kPklIi~G~S~-- 186 (463)
T d2a7va1 113 LL----QPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTSA-- 186 (463)
T ss_dssp HC----CSCEECCC-------------------------------CCBCTTTCSBCHHHHHHHHHHHCCSEEEECCSS--
T ss_pred Hc----CCCceEEeeccCcCcccccccccccccccceeeEeeeeeeeccCCCCcCcHHHHHHHHhhcCCceEEecccc--
Confidence 98 899999988777665432111 111112 2344455564 67899999999885 578998876544
Q ss_pred ccccccHHHHHHHHHhcCCEEEEecccccc-----cccccCCCCCccEEEecccc-ccCCCCcEEEEEecCC--------
Q psy15216 149 IGVIQPILEIGELCRSKGVIFHCDAAQAVG-----KIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNP-------- 214 (2602)
Q Consensus 149 TG~~~~l~~I~~la~~~g~~livD~a~a~g-----~~~~dl~~~~~D~~~~S~~K-~~Gp~G~G~l~~~~~~-------- 214 (2602)
.-..+|++++.++|++.|+++++|.+|-.| ..|-++. .+|++.+|.|| +.||+| |+++.+++.
T Consensus 187 y~r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sP~~--~aDvvt~tTHKTlrGPrg-GiIl~~~~~~~~~~~~~ 263 (463)
T d2a7va1 187 YARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFK--HADIVTTTTHKTLRGARS-GLIFYRKGVKAVDPKTG 263 (463)
T ss_dssp CCSCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGG--TCSEEEEESSGGGCSCSC-EEEEEECSEEEEETTTE
T ss_pred cccccCHHHHHHHhhcccceEEechhhhhHHhhhhhhcChhh--hhhhhhchhhhhhcCCCc-eEEEEcccccccccccC
Confidence 445679999999999999999999999654 3333332 36999999999 779996 888887642
Q ss_pred -------CCcccceecCCCccccccccCcchhHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCC
Q psy15216 215 -------RTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRL-ARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDM 286 (2602)
Q Consensus 215 -------~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~-~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~ 286 (2602)
.+++....+.+ ..|.|..+.++|...++.. ....+....++..++++.|.+.|.+ .|+.+....
T Consensus 264 ~~~~~~~~~~i~~avFPg------~qggph~h~iAa~Ava~~ea~~~~fk~Ya~qVv~NAk~La~~L~~--~G~~vv~gg 335 (463)
T d2a7va1 264 REIPYTFEDRINFAVFPS------LQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLE--RGYSLVSGG 335 (463)
T ss_dssp EEEECCCHHHHHHHHTTT------TCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHH--TTCEEGGGS
T ss_pred ccchhHHHHHhhhhcCcc------cchhhhhhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHh--CCCeeecCC
Confidence 22222222111 2357888888888888874 3355788899999999999999988 699998654
Q ss_pred CCCCCceEEEEEc--ccChhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecC----CCCCHHH
Q psy15216 287 NNRIPHNLNISFN--FIEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIG----RFTTEKE 358 (2602)
Q Consensus 287 ~~~~~~~~~~~~~--~~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~----~~~t~ed 358 (2602)
.. .+.+.+.+. +.++......| .+|.+..... |. + ........|||+.. .-..++|
T Consensus 336 Td--nHlvlvdl~~~~~~G~~ae~~Le~~gI~~Nkn~i--P~-----------D-~~~~~~sGiRiGT~a~TtrG~~e~d 399 (463)
T d2a7va1 336 TD--NHLVLVDLRPKGLDGARAERVLELVSITANKNTC--PG-----------D-RSAITPGGLRLGAPALTSRQFREDD 399 (463)
T ss_dssp CS--SSEEEEECTTTTCCHHHHHHHHHHTTEECEEECC--TT-----------C-CCSSSCSEEEEESHHHHHTTCCHHH
T ss_pred CC--CceeeeeccccCCCHHHHHHHHHhccCccCCccC--CC-----------C-CCCCCCCceEeCCHHHHhCCCCHHH
Confidence 33 345555543 24555555555 6777753221 11 0 00112367999853 2346789
Q ss_pred HHHHHHHHHh
Q psy15216 359 IDFTIKLLKM 368 (2602)
Q Consensus 359 id~li~~L~~ 368 (2602)
+..+.+.|.+
T Consensus 400 m~~iA~~I~~ 409 (463)
T d2a7va1 400 FRRVVDFIDE 409 (463)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999888876
|
| >d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=99.43 E-value=3.9e-12 Score=156.52 Aligned_cols=332 Identities=17% Similarity=0.181 Sum_probs=223.7
Q ss_pred CCCCCCCHHHHHHHHHHHhhhc--CCCCCCCcchhhhHH-HHHHHHHHHHHHHhCCCCCc---EEEeCCHHHHHHHHHHh
Q psy15216 4 SATTPIDPRVVDKMIPYLRVQF--GNPASRNHIYGWTAE-KAIEKARNEVAQLIYADPRE---IIWTSGATESNNLAIKG 77 (2602)
Q Consensus 4 a~~~~~p~~v~~a~~~~l~~~~--~~p~~~~~~~~~~~~-~~~~~~r~~lA~~~g~~~~~---Iv~t~g~T~al~~~~~~ 77 (2602)
++-..+++.|++++...+.+.| ++|+.. |..|.... .....+.++..++||+++++ -+=..|++.|+.+++.+
T Consensus 38 aSEN~~S~~v~~algS~l~nkYaeG~pg~R-yy~G~~~iD~iE~la~~ra~~lF~~~~~~~~anVqp~SGs~An~av~~a 116 (470)
T d1rv3a_ 38 ASENFASRAVLEALGSCLNNKYSLGYPGQR-YYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTA 116 (470)
T ss_dssp TTCCCCCHHHHHHHTSGGGTCCCCEETTEE-SSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHH
T ss_pred cCCCcCCHHHHHHhcchhcccccCCCCCcc-ccCCchhHHHHHHHHHHHHHHHhCCChhhccccccccCCccHHHHHHHH
Confidence 4455789999999988887654 466653 33344443 34444667788999987542 24456778899999999
Q ss_pred cccccccCCCEEEEcCCCCcccHHHHHH-------HHhCCcEEEEeccCC-CCccChHHHHhhcc-CCceEEEEecccCc
Q psy15216 78 AAHFYKKRGKHIITVQTEHKSVLDSIRK-------LENDGFRVTYLKPKN-NGLITLSQLEEKIC-SDTILVSVMLVNNE 148 (2602)
Q Consensus 78 l~~~~~~~gd~Vlv~~~~~~s~~~~~~~-------~~~~G~~v~~v~~~~-~~~ld~e~l~~~i~-~~tklv~i~~~~np 148 (2602)
+. +|||.|+..+..+.+...--.. ......+...+++++ ++.+|.+++++... .++++|++-.-.
T Consensus 117 ll----~pgD~im~~~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~v~~~~~~IDyd~l~~~a~~~kPklIi~G~S~-- 190 (470)
T d1rv3a_ 117 LV----EPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIAGTSC-- 190 (470)
T ss_dssp HT----CTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEEECCSS--
T ss_pred hc----CCCCeEeeeccccCCcccccccccCCCcccccceeEeeEEEEecccCcccHHHHHHHHHhhCcceEeechhh--
Confidence 98 9999999977665543221000 001135778888886 47899999999875 588988875544
Q ss_pred ccccccHHHHHHHHHhcCCEEEEecccccc-----cccccCCCCCccEEEecccc-ccCCCCcEEEEEecCCC-------
Q psy15216 149 IGVIQPILEIGELCRSKGVIFHCDAAQAVG-----KIDINIQNYKVDLMSFSAHK-IYGPKGIGALYIRRNPR------- 215 (2602)
Q Consensus 149 TG~~~~l~~I~~la~~~g~~livD~a~a~g-----~~~~dl~~~~~D~~~~S~~K-~~Gp~G~G~l~~~~~~~------- 215 (2602)
.-..+|++++.++|++.|+++++|.+|-.| ..|-++. .+|++.+|.|| +.||+| |+++.+++.-
T Consensus 191 y~r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sPl~--~aDvvt~tTHKtlrGPrg-GiI~~~~~~~~~~~~~~ 267 (470)
T d1rv3a_ 191 YSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFE--HCHVVTTTTHKTLRGCRA-GMIFYRRGVRSVDPKTG 267 (470)
T ss_dssp CCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGG--TCSEEEEESSGGGCCCSC-EEEEEECSBCC------
T ss_pred ccccCCHHHHHHHHhccCCeEEecchhhhhhccccccCChhh--eeeeeeeehhhhccCCcc-eEEEEcccccccccccc
Confidence 445679999999999999999999999654 3333342 35999999999 679997 8888876421
Q ss_pred --------CcccceecCCCccccccccCcchhHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCC
Q psy15216 216 --------TRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLA-RIEMKEELKRILFLQKRLYNGLMESIEEIYINGDM 286 (2602)
Q Consensus 216 --------~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~-~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~ 286 (2602)
+++....+.+ ..|.|..+.++|+..++... ...+.+..++..++++.|.+.|.+ .|+.+....
T Consensus 268 ~~~~~~~~~~i~~avFPg------~qggph~~~IAa~Ava~~ea~~~~fk~Ya~qvv~NAk~La~~L~~--~G~~v~~gg 339 (470)
T d1rv3a_ 268 KEILYNLESLINSAVFPG------LQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVE--LGYKIVTGG 339 (470)
T ss_dssp -CCBCCHHHHHHHHHTTT------TCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH--TTCEEGGGS
T ss_pred chhHHHHHHHHhhhcCcc------ccccchhhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHh--CCceeccCC
Confidence 1122111111 23678888888888888743 345788889999999999999988 689987544
Q ss_pred CCCCCceEEEEEc--ccChhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecC----CCCCHHH
Q psy15216 287 NNRIPHNLNISFN--FIEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIG----RFTTEKE 358 (2602)
Q Consensus 287 ~~~~~~~~~~~~~--~~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~----~~~t~ed 358 (2602)
.. .+.+.+.+. +.++.+....| .+|.+..-. .|. +. .......|||+.. ....++|
T Consensus 340 Td--nHlvlvdl~~~g~~g~~ae~~Le~~gI~~Nkn~--iP~-----------D~-~~~~~sGiRiGT~alTtrG~~e~d 403 (470)
T d1rv3a_ 340 SD--NHLILVDLRSKGTDGGRAEKVLEACSIACNKNT--CPG-----------DK-SALRPSGLRLGTPALTSRGLLEKD 403 (470)
T ss_dssp CS--SSEEEEEGGGGTCCHHHHHHHHHHTTEECEEEC--CSS-----------CS-CTTSCCEEEEECHHHHHTTCCHHH
T ss_pred CC--CceEEEeecccCCcHHHHHHHHHHcCcEECCCc--CCC-----------CC-CCCCCCeeEecCHHHHhCCCCHHH
Confidence 33 355555543 24555555555 577765321 111 00 0112367999752 3457899
Q ss_pred HHHHHHHHHhh
Q psy15216 359 IDFTIKLLKMK 369 (2602)
Q Consensus 359 id~li~~L~~~ 369 (2602)
+.++.+.|.+.
T Consensus 404 m~~iA~~I~~~ 414 (470)
T d1rv3a_ 404 FQKVAHFIHRG 414 (470)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998888763
|
| >d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-lyase (CYS3) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.42 E-value=5.4e-13 Score=164.83 Aligned_cols=301 Identities=16% Similarity=0.157 Sum_probs=188.4
Q ss_pred HHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHHH-HhCCcEEEEec
Q psy15216 1435 AEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDGFRVTYLK 1513 (2602)
Q Consensus 1435 ~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~-~~~G~~v~~v~ 1513 (2602)
.......++++|+++-|.. ..+.+++|..|+..++ .++ .+||+|+++...|.......... .+.|.++.+++
T Consensus 53 gnPT~~~lE~~la~LE~~~--~a~~~sSGmaAi~~~l-~~l----~~gd~iv~~~~~yg~t~~~~~~~l~~~gi~~~~~~ 125 (393)
T d1n8pa_ 53 QNPNRENLERAVAALENAQ--YGLAFSSGSATTATIL-QSL----PQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTN 125 (393)
T ss_dssp CCHHHHHHHHHHHHHTTCS--EEEEESCHHHHHHHHH-HTS----CSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEEES
T ss_pred CChHHHHHHHHHHHHhCCc--eEEEecCchhHHHhhh-hcc----cCCCeeeeeeeecccchhhhhhhhhcccceeEEee
Confidence 3345778899999999854 5677788777876554 444 68999999999999877776655 45588887775
Q ss_pred cCCCCCcChhHHHhhccCCceEEEEeccccccccccChHHHHHHhh----hcCCEEEEecccccCcccccCCCCCccEEE
Q psy15216 1514 PKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCR----SKGVIFHCDAAQAVGKIDINIQNYKVDLMS 1589 (2602)
Q Consensus 1514 ~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~~ia~----~~gi~vivD~a~~~g~~~~~l~~~~~D~~v 1589 (2602)
. +.++++++++++|++|++..|+||+..+.|+++|+++|| ++|++++||.+-+.+...-++ ++|+|+++
T Consensus 126 ~------~~~~~~~~i~~~t~lv~~EspsNP~l~v~Di~~ia~~a~~~~~~~g~~lvVDnT~atP~~~~Pl-~~GADiVv 198 (393)
T d1n8pa_ 126 D------LLNDLPQLIKENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPYISNPL-NFGADIVV 198 (393)
T ss_dssp S------HHHHHHHHSCSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEECTTTHHHHCCGG-GGTCSEEE
T ss_pred c------chHHHHHHhhhhcceeEecCcchhhhhccchhhhhhhhhhhcccCCceEEEecCccCcccCCch-hhCCCEEE
Confidence 2 467899999999999999999999999999999999999 678999999997655432222 46899999
Q ss_pred EccccccCCCc---eEEEEEecC-CCCccccccccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15216 1590 FSAHKIYGPKG---IGALYIRRN-PRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRL 1665 (2602)
Q Consensus 1590 ~S~~K~~gp~G---~G~l~~~~~-~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l 1665 (2602)
.|..|+++..| .|.++.+++ +.++++... ....+++++...+.+...++- +..++++..+.+..+
T Consensus 199 hS~TKyi~GhsDv~~G~v~~~~~~~~~~l~~~~-------~~~G~~~~p~~a~ll~rgl~T----l~lR~~~~~~nA~~l 267 (393)
T d1n8pa_ 199 HSATKYINGHSDVVLGVLATNNKPLYERLQFLQ-------NAIGAIPSPFDAWLTHRGLKT----LHLRVRQAALSANKI 267 (393)
T ss_dssp EETTTTTTCSSCCCCEEEEESCHHHHHHHHHHH-------HHHCCCCCHHHHHHHHHHHTT----HHHHHHHHHHHHHHH
T ss_pred EccccccCCCCccccceeeecchhHHHHHHHHH-------hhcCCCCChHHHHHHHhCCcc----hhhHHHHHHHHHHHH
Confidence 99999766544 566666543 223332211 111234444444434344442 455566667777777
Q ss_pred HHHHhhcCCcEEE-eCC--CCCC---------C--CceEEEEEecC-C---cHHHHHhcC--CEEEccccccC---CCC-
Q psy15216 1666 YNGLMESIEEIYI-NGD--MNNR---------I--PHNLNISFNFI-E---GESLLMAIK--DIAVSSGSACT---SAS- 1721 (2602)
Q Consensus 1666 ~~~L~~~~~gl~i-~~~--~~~~---------~--~~~~~~~~~~~-~---~~~~~~~L~--gI~v~~g~~~~---~~~- 1721 (2602)
.+.|.+..+.+.- .-| +++. . ..+..++|... . ...++..|+ .+..+-|.... .+.
T Consensus 268 A~~L~~~~~~V~~V~yP~l~~~~~~~~a~~~~~~~~~G~~~sf~l~~~~~~~~~f~~~l~l~~~~~SlGg~~SLi~~p~~ 347 (393)
T d1n8pa_ 268 AEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGGAEAASKFASSTRLFTLAESLGGIESLLEVPAV 347 (393)
T ss_dssp HHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSCHHHHHHHHHHCSSSEECSCCCCSSCEEECTTT
T ss_pred HHHHHhccCcEEEEecccccccccchhhhhccccCCCCceEEEEEeCCHHHHHHHHHhCCcceecccCCCcCceEeCchh
Confidence 7777652244432 222 1110 0 11234444432 1 234666663 22222232211 110
Q ss_pred ----CChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy15216 1722 ----LEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKM 1764 (2602)
Q Consensus 1722 ----~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~ 1764 (2602)
..+.......|++ .+.||||+|..+.++-++.+-++|+.
T Consensus 348 ~~h~~~~~~~r~~~gi~----~~liRlSvGlE~~~DLi~Dl~~AL~~ 390 (393)
T d1n8pa_ 348 MTHGGIPKEAREASGVF----DDLVRISVGIEDTDDLLEDIKQALKQ 390 (393)
T ss_dssp TTSCSSCTTTTTTTSCC----TTEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred hccccCCHHHHHhcCCC----cCEEEEEeccCCHHHHHHHHHHHHHH
Confidence 0011111223443 37899999987666666666666664
|
| >d2bt6a1 d.15.4.1 (A:5-108) Adrenodoxin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: 2Fe-2S ferredoxin-like family: 2Fe-2S ferredoxin-related domain: Adrenodoxin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.40 E-value=4.9e-14 Score=140.13 Aligned_cols=76 Identities=34% Similarity=0.584 Sum_probs=69.1
Q ss_pred hccccCCCchhHHHHhcccchh--hhcccccccccCcEEEccCc-cccCCCCHHHHHHhhcccCcccccccccccchhh
Q psy15216 1136 IFNENSGISLCDALLKNSIFIE--HACEKSCACATCHVIIREGF-NEINKANEVEEDMLNKAWGLEENSRLSFDAKRGK 1211 (2602)
Q Consensus 1136 ~~~~~~g~~~~~~~~~~~~~~~--~~c~g~~~c~tch~~~~~~~-~~~~~~~~~e~~~l~~~~~~~~~srl~~d~~~~~ 1211 (2602)
+++..+|.+||+++++|++++. +.|||.++|+||||+|.++| +.+++++++|++||+.+++..++|||+||++-.+
T Consensus 16 ~i~~~~G~tLl~~~~~~gi~i~~~~~CgG~~~C~tC~V~v~~~~~~~l~~~~~~E~~~L~~~~~~~~~sRLaCQi~l~~ 94 (104)
T d2bt6a1 16 TTKGKIGDSLLDVVVQNNLDIDGFGACEGTLACSTCHLIFEQHIFEKLEAITDEENDMLDLAYGLTDRSRLGCQICLTK 94 (104)
T ss_dssp EEEEETTCBHHHHHHHTTCCCTTTTTTSSSSSBSTTEEECCHHHHTTSCCCCHHHHHHHTTCTTCCTTEEEGGGCBCCG
T ss_pred EEEeCCCchHHHHHHHcCCCcccccccCCccccceEEEEecccchhhcCCCCHHHHHHhhccCCCCcCeEEeeeCEeec
Confidence 5678889999999999999764 56999999999999999998 9999999999999999999999999999987543
|
| >d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase (decarboxylating) subunit 1 species: Thermus thermophilus [TaxId: 274]
Probab=99.38 E-value=2.9e-11 Score=150.69 Aligned_cols=304 Identities=13% Similarity=0.086 Sum_probs=208.9
Q ss_pred hhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCCEEEEcCCCCcccHHHHHHH-HhCCcEE
Q psy15216 35 YGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDGFRV 113 (2602)
Q Consensus 35 ~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~-~~~G~~v 113 (2602)
.+....+.+-+++++++++.|.+.-+...-.|++.....++.+.. ....+.++++...||++....... +..|+++
T Consensus 102 ~sQG~Lq~l~e~q~~l~eltGmd~~n~s~~~ga~a~~~~~~~~~~---~~~~~~~~v~~~~~p~~~~v~~t~a~~~g~~v 178 (437)
T d1wyua1 102 VSQGVLQATFEYQTMIAELAGLEIANASMYDGATALAEGVLLALR---ETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKL 178 (437)
T ss_dssp GCHHHHHHHHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHHH---HHTCCEEEEETTSCHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCccccCchHHHHHHHHHHHHHHh---hhcccccccccccChHHhhhhhhhcccceeeE
Confidence 345667788899999999999976667777888887777766654 346678999999999986655443 5569999
Q ss_pred EEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHhcCCEEEEecccccccccccCCCCCccEEE
Q psy15216 114 TYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMS 193 (2602)
Q Consensus 114 ~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~~g~~livD~a~a~g~~~~dl~~~~~D~~~ 193 (2602)
+.++.+.++..+ + .+.+++.+|++++||+ .|.+-++++|++++|+.|.++++|+....-..-....++|+|+++
T Consensus 179 v~v~~~~~~~~~-~----~~~~~~Aavmi~~Pnt-~G~~ed~~~i~~~~h~~G~l~~~~ad~~al~~l~~Pg~~GaDi~~ 252 (437)
T d1wyua1 179 LTLPLEGGRTPL-P----EVGEEVGAVVVQNPNF-LGALEDLGPFAEAAHGAGALFVAVADPLSLGVLKPPGAYGADIAV 252 (437)
T ss_dssp EEECCBTTBCCC-C----CCCTTEEEEEEESSCT-TSBCCCHHHHHHHHHHTTCEEEEECCTTGGGTBCCHHHHTCSEEE
T ss_pred Eeeecccccchh-h----hhccceeEEEEccccc-cccccchHHHHHHhhhccceEEeeechhhhhccccccccccceEe
Confidence 999976544332 2 2678999999999966 899999999999999999998888654322221234457899999
Q ss_pred eccccc-----cCCCCcEEEEEecCCCCcccceecCCCc---------------cc--cccccCc-----chhHHHHHHH
Q psy15216 194 FSAHKI-----YGPKGIGALYIRRNPRTRIEAQIHGGGH---------------EY--GLRSGTL-----ATHQIVGMGE 246 (2602)
Q Consensus 194 ~S~~K~-----~Gp~G~G~l~~~~~~~~~l~~~~~g~~~---------------~~--~~~~gt~-----~~~~~~al~~ 246 (2602)
++.+++ ||.+|.|++.+++++...+...+.|-.. ++ +.+.++. ..........
T Consensus 253 g~~q~fg~p~g~GGP~~G~~a~~~~l~r~lPgrivg~s~d~~G~~~~~l~lqtreqhIrRekatsnict~q~l~a~~a~~ 332 (437)
T d1wyua1 253 GDGQSLGLPMGFGGPHFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAM 332 (437)
T ss_dssp EECTTTTCCCGGGCSCCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHH
T ss_pred eccceeccccCCCcCccccccccchhhccccccccccccccCCcccceeecccccccccccccccchhhHHHHHHHHHHH
Confidence 994443 3455589999999887777654433100 00 0111222 2222222222
Q ss_pred HHH-HHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcccChhHHHHHh--CCeEEcccccCCC
Q psy15216 247 AFR-LARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDIAVSSGSACTS 323 (2602)
Q Consensus 247 al~-~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~v~~g~~~~~ 323 (2602)
.+. +..+++.++.++...++.++.++|.+ ++|++++.+.. ..+-+.+.+ ..+..++.++| +||.... ...+
T Consensus 333 Y~~~lG~~GL~~ia~~a~~~A~yl~~~L~~-~~g~~~~~~~~--~f~ef~v~~-~~~~~~i~k~L~d~G~~~~~--~~~~ 406 (437)
T d1wyua1 333 YLAALGPEGLREVALKSVEMAHKLHALLLE-VPGVRPFTPKP--FFNEFALAL-PKDPEAVRRALAERGFHGAT--PVPR 406 (437)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-STTCEECSCSS--BCSEEEEEC-SSCHHHHHHHHHHTTCCCCE--ECCT
T ss_pred HhhhcCcccHHHHHHHHHHHHHHHHHHhhh-cCCeeccCCCC--eeeEEEEEC-CCCHHHHHHHHHhCCCCCCc--cccc
Confidence 223 44578999999999999999999988 78888764422 123333333 34667777777 6664321 1111
Q ss_pred CCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 324 ASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 324 ~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
...++.+.|++.-.+|.+|+|+++++|++.
T Consensus 407 ----------------~~~~~~lli~~TE~~tkeeiD~~v~al~ei 436 (437)
T d1wyua1 407 ----------------EYGENLALFAATELHEEEDLLALREALKEV 436 (437)
T ss_dssp ----------------TSCSSEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred ----------------CCCCCeEEEecCCCCCHHHHHHHHHHHHHh
Confidence 112378999999899999999999999864
|
| >d1xlqa1 d.15.4.1 (A:1-106) 2Fe-2S ferredoxin {Pseudomonas putida, putidaredoxin [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: 2Fe-2S ferredoxin-like family: 2Fe-2S ferredoxin-related domain: 2Fe-2S ferredoxin species: Pseudomonas putida, putidaredoxin [TaxId: 303]
Probab=99.37 E-value=1.5e-13 Score=136.99 Aligned_cols=75 Identities=37% Similarity=0.538 Sum_probs=68.5
Q ss_pred hccccCCCchhHHHHhccc-chhhhcccccccccCcEEEccCc-cccCCCCHHHHHHhhc-ccCcccccccccccchh
Q psy15216 1136 IFNENSGISLCDALLKNSI-FIEHACEKSCACATCHVIIREGF-NEINKANEVEEDMLNK-AWGLEENSRLSFDAKRG 1210 (2602)
Q Consensus 1136 ~~~~~~g~~~~~~~~~~~~-~~~~~c~g~~~c~tch~~~~~~~-~~~~~~~~~e~~~l~~-~~~~~~~srl~~d~~~~ 1210 (2602)
+++..+|.|||+++++||+ .+.+.|||.++|+||||+|.++| +.+|+++++|.+||+. ..+..++|||+||++-.
T Consensus 14 ~i~~~~G~tLl~aa~~~gi~~i~~~CgG~~~C~tC~V~v~~g~~~~l~~~~~~E~~~L~~~~~~~~~~sRLaCQ~~v~ 91 (106)
T d1xlqa1 14 ELDVADGVSLMQAAVSNGIYDIVGDCGGSASCATCHVYVNEAFTDKVPAANEREIGMLESVTAELKPNSRLCCQIIMT 91 (106)
T ss_dssp EEECCTTCBHHHHHHHTTCTTSCCTTCSSSSSCTTEEEECTTTGGGSCCCCHHHHHHHTTCSSCCCTTEEEGGGCBCC
T ss_pred EEEeCCCChHHHHHHHhCcCCchhhhhhccccccceEEecccchhcCCCCCHHHHHHHHhhhccCCCCcEeeeeeEec
Confidence 5688899999999999999 59999999999999999999998 8999999999999986 45678999999998754
|
| >d1b9ra_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Pseudomonas sp., terpredoxin [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: 2Fe-2S ferredoxin-like family: 2Fe-2S ferredoxin-related domain: 2Fe-2S ferredoxin species: Pseudomonas sp., terpredoxin [TaxId: 306]
Probab=99.37 E-value=8.7e-14 Score=138.36 Aligned_cols=75 Identities=28% Similarity=0.495 Sum_probs=69.0
Q ss_pred hccccCCCchhHHHHhcccc-hhhhcccccccccCcEEEccCc-cccCCCCHHHHHHhhcccC-cccccccccccchh
Q psy15216 1136 IFNENSGISLCDALLKNSIF-IEHACEKSCACATCHVIIREGF-NEINKANEVEEDMLNKAWG-LEENSRLSFDAKRG 1210 (2602)
Q Consensus 1136 ~~~~~~g~~~~~~~~~~~~~-~~~~c~g~~~c~tch~~~~~~~-~~~~~~~~~e~~~l~~~~~-~~~~srl~~d~~~~ 1210 (2602)
+++..+|.+||+++++|+++ +.+.|||.++|+||||+|.++| +.|++++++|++||+..+. ..++|||+||.+-.
T Consensus 14 ~v~~~~G~tLl~aa~~~gi~~i~~~CgG~g~C~tC~V~v~~g~~~~l~~~~~~E~~~l~~~~~~~~~~sRLaCQ~~v~ 91 (105)
T d1b9ra_ 14 AVDAQDGQSLMEVATQNGVPGIVAECGGSCVCATCRIEIEDAWVEIVGEANPDENDLLQSTGEPMTAGTRLSCQVFID 91 (105)
T ss_dssp EEECCTTCCTTHHHHHHTCCCCCCSSTTSSCCCCCCCEECTTTHHHHTCCCTTHHHHHHTSCCCCCTTBSCGGGCCCC
T ss_pred EEEECCCCcHHHHHHHcCCCCcccccCCCccccceEEEecccccccCCCCCHHHHHHHHhccccCCCCcEeEeeeEec
Confidence 67899999999999999996 9999999999999999999998 8999999999999987654 67899999998743
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Probab=99.36 E-value=1.8e-13 Score=178.61 Aligned_cols=308 Identities=16% Similarity=0.096 Sum_probs=178.5
Q ss_pred HHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhh-----hccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEe
Q psy15216 1438 AIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHF-----YKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYL 1512 (2602)
Q Consensus 1438 ~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~-----~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v 1512 (2602)
.+.++++++++++|.+ .+++++++|+|+..++.++... ...+++.+......|......+... |+.++.+
T Consensus 75 ~~~~le~~~a~l~G~~--~~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~---G~~~~~~ 149 (467)
T d2v1pa1 75 SYYALAESVKNIFGYQ--YTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQIN---GCTVRNV 149 (467)
T ss_dssp HHHHHHHHHHHHTCCS--EEEEECSSTTTHHHHHHHHHHHHHHHHCCCTTTCEEEESSCCHHHHHHHHHT---TCEEEEC
T ss_pred hHHHHHHHHHHHHCCC--EEEECCCCHHHHHHHHHHHhhccceEecCCCCcEEEEecccccccHHHHHHc---CCeeeec
Confidence 3578899999999965 7899999999999999998721 1122334555555555544444444 9999988
Q ss_pred ccCC----------CCCcChhHHHhhccC----CceEEEEeccccccc-cccC---hHHHHHHhhhcCCEEEEecccccC
Q psy15216 1513 KPKN----------NGLITLSQLEEKICS----DTILVSVMLVNNEIG-VIQP---ILEIGELCRSKGVIFHCDAAQAVG 1574 (2602)
Q Consensus 1513 ~~~~----------~~~id~d~l~~~i~~----~t~lv~l~~~~n~tG-~~~~---l~~I~~ia~~~gi~vivD~a~~~g 1574 (2602)
+.+. .+.+|++++++.+.+ .+.++++...+|..| .+.| +++|.++|++||+++|+|+||.++
T Consensus 150 ~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia~~~g~~l~~D~a~~~~ 229 (467)
T d2v1pa1 150 YIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAE 229 (467)
T ss_dssp BCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHH
T ss_pred ccccccccccccccccCCCHHHHHHHHhhcCccccceeeecceeeccccccCCHHHHHHHHHHHHHcCCEEEEechhhhc
Confidence 7652 356899999999863 457888888877665 4444 788999999999999999998765
Q ss_pred cccc------cCCC-----------CCccEEEEcccc-ccCCCceEEEEEecCCCCccccccc--cCCccccCCCCCcch
Q psy15216 1575 KIDI------NIQN-----------YKVDLMSFSAHK-IYGPKGIGALYIRRNPRTRIEAQIH--GGGHEYGLRSGTLAT 1634 (2602)
Q Consensus 1575 ~~~~------~l~~-----------~~~D~~v~S~~K-~~gp~G~G~l~~~~~~~~~l~~~~~--g~~~~~~~~~gt~~~ 1634 (2602)
.... .... ..+|++++|.|| +++|.| |++..+++.+........ +.........+....
T Consensus 230 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~K~~~~~~g-g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (467)
T d2v1pa1 230 NAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPMG-GLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEG 308 (467)
T ss_dssp HHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCCSSC-EEEEECSGGGHHHHHHHHHHHHHTTSSCCCCCCCH
T ss_pred cccccccccccccCCcccccchhhcccCCEEEecCCCCCCCCCc-eeEEecchhhhhHHHhhcccccccccCcchhhhHH
Confidence 3211 0000 136899999999 555554 888877654432211110 000011111223333
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEE----ecCCc-----HHHHHh
Q psy15216 1635 HQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISF----NFIEG-----ESLLMA 1705 (2602)
Q Consensus 1635 ~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~----~~~~~-----~~~~~~ 1705 (2602)
..+.++...+.. ....+..++..++.+++.++|.+. +..+.+... +...+.. +.... ..+...
T Consensus 309 ~~~~a~~~~~~~--~~~~~~~~~~~~~~~~l~~~L~~~--~~~v~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (467)
T d2v1pa1 309 GAMERLAVGLYD--GMNLDWLAYRIAQVQYLVDGLEEI--GVVCQQAGG----HAAFVDAGKLLPHIPADQFPAQALACE 380 (467)
T ss_dssp HHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHT--TCCEEEECS----SCEEEEHHHHSTTSCGGGCHHHHHHHH
T ss_pred HHHHHHHHHhHH--hhhHHHHHHHHHHHHHHHHHHHhc--CCcccCCCc----cceeecchhhcCCcchhhhhhHHHHHH
Confidence 344433333332 122455666677888999999873 322222111 1111111 11111 122222
Q ss_pred c---CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCC-CCCHHHHHHHHHHHHHh
Q psy15216 1706 I---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGR-FTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1706 L---~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~-~~t~edid~li~~L~~~ 1765 (2602)
+ .||.......+... .....+.........+||+++. ..|.+|||+++++|++.
T Consensus 381 ll~~~Gi~~~~~g~~~~~------~~~~~~~~~~~~~~~vRlaip~~~~T~eeiD~vv~~l~~v 438 (467)
T d2v1pa1 381 LYKVAGIRAVEIGSFLLG------RDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHV 438 (467)
T ss_dssp HHHHHCEECEEESHHHHC------BCTTTCSBCCCSCCEEEECCCTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHcCCeeecccccccc------cccccCCccCCCcceEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 2 45543211111000 0001111122234689999764 45999999999999984
|
| >d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase (decarboxylating) subunit 1 species: Thermus thermophilus [TaxId: 274]
Probab=99.36 E-value=7.5e-11 Score=146.96 Aligned_cols=304 Identities=13% Similarity=0.074 Sum_probs=205.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCEEEEcCCCCcchHHHHHHH-HhCCcEE
Q psy15216 1431 YGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKHIITVQTEHKSVLDSIRKL-ENDGFRV 1509 (2602)
Q Consensus 1431 ~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~Vlv~~~~~~s~~~~~~~~-~~~G~~v 1509 (2602)
.+++..+.+.++.+.++++.|.+.-+.-.-.|++.....++++.. ......++++...||++....... +..|.++
T Consensus 102 ~sQG~Lq~l~e~q~~l~eltGmd~~n~s~~~ga~a~~~~~~~~~~---~~~~~~~~v~~~~~p~~~~v~~t~a~~~g~~v 178 (437)
T d1wyua1 102 VSQGVLQATFEYQTMIAELAGLEIANASMYDGATALAEGVLLALR---ETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKL 178 (437)
T ss_dssp GCHHHHHHHHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHHH---HHTCCEEEEETTSCHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCccccCchHHHHHHHHHHHHHHh---hhcccccccccccChHHhhhhhhhcccceeeE
Confidence 356777888999999999999875555556677777766666544 245678999999999987665443 5569999
Q ss_pred EEeccCCCCCcChhHHHhhccCCceEEEEeccccccccccChHHHHHHhhhcCCEEEEecccccCcccccCCCCCccEEE
Q psy15216 1510 TYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSKGVIFHCDAAQAVGKIDINIQNYKVDLMS 1589 (2602)
Q Consensus 1510 ~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~~ia~~~gi~vivD~a~~~g~~~~~l~~~~~D~~v 1589 (2602)
+.++.+.++..+ + .+.+++.+|++.+||+ .|.+-++++|.+++|+.|.++++|+....-..-....++|+|+++
T Consensus 179 v~v~~~~~~~~~-~----~~~~~~Aavmi~~Pnt-~G~~ed~~~i~~~~h~~G~l~~~~ad~~al~~l~~Pg~~GaDi~~ 252 (437)
T d1wyua1 179 LTLPLEGGRTPL-P----EVGEEVGAVVVQNPNF-LGALEDLGPFAEAAHGAGALFVAVADPLSLGVLKPPGAYGADIAV 252 (437)
T ss_dssp EEECCBTTBCCC-C----CCCTTEEEEEEESSCT-TSBCCCHHHHHHHHHHTTCEEEEECCTTGGGTBCCHHHHTCSEEE
T ss_pred Eeeecccccchh-h----hhccceeEEEEccccc-cccccchHHHHHHhhhccceEEeeechhhhhccccccccccceEe
Confidence 999876543322 2 2678999999999965 899999999999999999998888654321112234567899999
Q ss_pred Ecccccc-----CCCceEEEEEecCCCCccccccccCCc------------cc----------cCCCCCcchhHHHHHHH
Q psy15216 1590 FSAHKIY-----GPKGIGALYIRRNPRTRIEAQIHGGGH------------EY----------GLRSGTLATHQIVGMGE 1642 (2602)
Q Consensus 1590 ~S~~K~~-----gp~G~G~l~~~~~~~~~l~~~~~g~~~------------~~----------~~~~gt~~~~~~~al~~ 1642 (2602)
++.+++. |.+|.|++.+++++...+.+.+.|-.. +. ....++...........
T Consensus 253 g~~q~fg~p~g~GGP~~G~~a~~~~l~r~lPgrivg~s~d~~G~~~~~l~lqtreqhIrRekatsnict~q~l~a~~a~~ 332 (437)
T d1wyua1 253 GDGQSLGLPMGFGGPHFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAM 332 (437)
T ss_dssp EECTTTTCCCGGGCSCCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHH
T ss_pred eccceeccccCCCcCccccccccchhhccccccccccccccCCcccceeecccccccccccccccchhhHHHHHHHHHHH
Confidence 9944443 334479999998877766654443110 00 01123333322222222
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEecCCcHHHHHhc--CCEEEccccccCC
Q psy15216 1643 AFR-LARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFIEGESLLMAI--KDIAVSSGSACTS 1719 (2602)
Q Consensus 1643 aL~-~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~L--~gI~v~~g~~~~~ 1719 (2602)
.+. +..++++++.++...++.++.++|.+ ++++.+..+ .. ..+-+.+.+ ..+..++.++| +|+... ....+
T Consensus 333 Y~~~lG~~GL~~ia~~a~~~A~yl~~~L~~-~~g~~~~~~-~~-~f~ef~v~~-~~~~~~i~k~L~d~G~~~~--~~~~~ 406 (437)
T d1wyua1 333 YLAALGPEGLREVALKSVEMAHKLHALLLE-VPGVRPFTP-KP-FFNEFALAL-PKDPEAVRRALAERGFHGA--TPVPR 406 (437)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-STTCEECSC-SS-BCSEEEEEC-SSCHHHHHHHHHHTTCCCC--EECCT
T ss_pred HhhhcCcccHHHHHHHHHHHHHHHHHHhhh-cCCeeccCC-CC-eeeEEEEEC-CCCHHHHHHHHHhCCCCCC--ccccc
Confidence 333 56678999999999999999999988 788876533 22 122222222 34566777766 665421 11111
Q ss_pred CCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1720 ASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1720 ~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
....+.+.+++.-.+|.+|||+++++|++.
T Consensus 407 ----------------~~~~~~lli~~TE~~tkeeiD~~v~al~ei 436 (437)
T d1wyua1 407 ----------------EYGENLALFAATELHEEEDLLALREALKEV 436 (437)
T ss_dssp ----------------TSCSSEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred ----------------CCCCCeEEEecCCCCCHHHHHHHHHHHHHh
Confidence 111378999999999999999999999873
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Probab=99.33 E-value=1.3e-13 Score=180.06 Aligned_cols=306 Identities=15% Similarity=0.080 Sum_probs=177.6
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCCC---------EEEEcCCCCcccHHHHHHHHhCCc
Q psy15216 41 KAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK---------HIITVQTEHKSVLDSIRKLENDGF 111 (2602)
Q Consensus 41 ~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~gd---------~Vlv~~~~~~s~~~~~~~~~~~G~ 111 (2602)
+...++++++++++|.+ .+++++|+|+|+.+++.++. ++|+ .++.+...|......+.. .|+
T Consensus 74 ~~~~~le~~~a~l~G~~--~~~~~~sGt~A~~~a~~~~~----~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~G~ 144 (467)
T d2v1pa1 74 RSYYALAESVKNIFGYQ--YTIPTHQGRGAEQIYIPVLI----KKREQEKGLDRSKMVAFSNYFFDTTQGHSQI---NGC 144 (467)
T ss_dssp HHHHHHHHHHHHHTCCS--EEEEECSSTTTHHHHHHHHH----HHHHHHHCCCTTTCEEEESSCCHHHHHHHHH---TTC
T ss_pred chHHHHHHHHHHHHCCC--EEEECCCCHHHHHHHHHHHh----hccceEecCCCCcEEEEecccccccHHHHHH---cCC
Confidence 34678999999999975 78999999999999999987 4443 345554444444444443 499
Q ss_pred EEEEeccCC----------CCccChHHHHhhcc----CCceEEEEecccCccc-ccc---cHHHHHHHHHhcCCEEEEec
Q psy15216 112 RVTYLKPKN----------NGLITLSQLEEKIC----SDTILVSVMLVNNEIG-VIQ---PILEIGELCRSKGVIFHCDA 173 (2602)
Q Consensus 112 ~v~~v~~~~----------~~~ld~e~l~~~i~----~~tklv~i~~~~npTG-~~~---~l~~I~~la~~~g~~livD~ 173 (2602)
.++.++.+. .+.+|++++++.+. +.++++++...+|..| .++ ++++|.++|++||+++|+|+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia~~~g~~l~~D~ 224 (467)
T d2v1pa1 145 TVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDS 224 (467)
T ss_dssp EEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEEC
T ss_pred eeeecccccccccccccccccCCCHHHHHHHHhhcCccccceeeecceeeccccccCCHHHHHHHHHHHHHcCCEEEEec
Confidence 999887653 35689999999986 3467888888888765 444 47788999999999999999
Q ss_pred ccccccccc------cCC-----------CCCccEEEeccccccCCCCcEEEEEecCCCCcccceec--CCCcccccccc
Q psy15216 174 AQAVGKIDI------NIQ-----------NYKVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIH--GGGHEYGLRSG 234 (2602)
Q Consensus 174 a~a~g~~~~------dl~-----------~~~~D~~~~S~~K~~Gp~G~G~l~~~~~~~~~l~~~~~--g~~~~~~~~~g 234 (2602)
+|.++.... ... ...+|++.+|.||.++.++.|++..+++.......... +.........+
T Consensus 225 a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~K~~~~~~gg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (467)
T d2v1pa1 225 ARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYG 304 (467)
T ss_dssp TTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCCSSCEEEEECSGGGHHHHHHHHHHHHHTTSSCCCC
T ss_pred hhhhccccccccccccccCCcccccchhhcccCCEEEecCCCCCCCCCceeEEecchhhhhHHHhhcccccccccCcchh
Confidence 987653211 000 11368999999995544445888877654432211100 00000001111
Q ss_pred CcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEE----cccC-----hhH
Q psy15216 235 TLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISF----NFIE-----GES 305 (2602)
Q Consensus 235 t~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~----~~~~-----~~~ 305 (2602)
..+...+.++...+. .....+..++..++.+++.++|.+ .+..+.+... +...+.. +... ...
T Consensus 305 ~~~~~~~~a~~~~~~--~~~~~~~~~~~~~~~~~l~~~L~~--~~~~v~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 376 (467)
T d2v1pa1 305 GLEGGAMERLAVGLY--DGMNLDWLAYRIAQVQYLVDGLEE--IGVVCQQAGG----HAAFVDAGKLLPHIPADQFPAQA 376 (467)
T ss_dssp CCCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHH--TTCCEEEECS----SCEEEEHHHHSTTSCGGGCHHHH
T ss_pred hhHHHHHHHHHHHhH--HhhhHHHHHHHHHHHHHHHHHHHh--cCCcccCCCc----cceeecchhhcCCcchhhhhhHH
Confidence 222222222222222 222356667778888999999987 2333332211 1111111 1111 112
Q ss_pred HHHHh---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCC-CCCHHHHHHHHHHHHhh
Q psy15216 306 LLMAI---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGR-FTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 306 ~~~~L---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~-~~t~edid~li~~L~~~ 369 (2602)
+...+ .||.......+... .....+.........+|+++.. ..|+||||+++++|+++
T Consensus 377 ~~~~ll~~~Gi~~~~~g~~~~~------~~~~~~~~~~~~~~~vRlaip~~~~T~eeiD~vv~~l~~v 438 (467)
T d2v1pa1 377 LACELYKVAGIRAVEIGSFLLG------RDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHV 438 (467)
T ss_dssp HHHHHHHHHCEECEEESHHHHC------BCTTTCSBCCCSCCEEEECCCTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCeeecccccccc------cccccCCccCCCcceEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 22222 45533211110000 0001111111224679999754 45999999999999975
|
| >d1e9ma_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Rhodobacter capsulatus, ferredoxin VI [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: 2Fe-2S ferredoxin-like family: 2Fe-2S ferredoxin-related domain: 2Fe-2S ferredoxin species: Rhodobacter capsulatus, ferredoxin VI [TaxId: 1061]
Probab=99.32 E-value=3e-13 Score=135.25 Aligned_cols=75 Identities=28% Similarity=0.551 Sum_probs=68.5
Q ss_pred hccccCCCchhHHHHhcccc-hhhhcccccccccCcEEEccCc-cccCCCCHHHHHHhhcccCcc-cccccccccchh
Q psy15216 1136 IFNENSGISLCDALLKNSIF-IEHACEKSCACATCHVIIREGF-NEINKANEVEEDMLNKAWGLE-ENSRLSFDAKRG 1210 (2602)
Q Consensus 1136 ~~~~~~g~~~~~~~~~~~~~-~~~~c~g~~~c~tch~~~~~~~-~~~~~~~~~e~~~l~~~~~~~-~~srl~~d~~~~ 1210 (2602)
+++...|.+||+++++||++ +.+.|||.++|+||||+|.++| +.+|+++++|.+||+..++.. .+|||+||..-.
T Consensus 14 ~i~~~~G~tLl~a~~~~gi~~i~~~CgG~g~C~tC~V~i~~g~~~~l~~~~~~E~~~L~~~~~~~~~~sRLaCQ~~v~ 91 (106)
T d1e9ma_ 14 EVEAKPGLTVMEAARDNGVPGIDADCGGACACSTCHAYVDPAWVDKLPKALPTETDMIDFAYEPNPATSRLTCQIKVT 91 (106)
T ss_dssp EEECCTTSBHHHHHHTTTCTTCCCTTSSSSSSCTTEEEECHHHHTTSCCCCHHHHHHHTTSSSCCTTTEEEGGGCBCC
T ss_pred EEEECCCChHHHHHHHcCCCCcCcccccCceecceEEEeccCccccCCCCCHHHHHHHhhccccCCCceEeeEeCEec
Confidence 46788999999999999995 9999999999999999999998 999999999999999887765 589999999754
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Probab=99.30 E-value=5.1e-12 Score=164.79 Aligned_cols=308 Identities=17% Similarity=0.154 Sum_probs=172.3
Q ss_pred HHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhh---hccCCCEEEEcCCCCcchHHHHHHHHhCCcEEEEecc
Q psy15216 1438 AIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHF---YKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLKP 1514 (2602)
Q Consensus 1438 ~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~---~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~ 1514 (2602)
.+.++++++++++|.+ +++|++|+|+|+..++.++... ....+..++.....|.++...... .|..++.+..
T Consensus 76 ~~~~le~~~a~l~g~~--~~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~i~~~~h~~t~~~~~~~---~g~~~~~~~~ 150 (465)
T d1ax4a_ 76 NYYDLKDKAKELFNYD--YIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVEL---NGCKAINIVT 150 (465)
T ss_dssp HHHHHHHHHHHHHCCC--EEEEESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEESSCCHHHHHHHHH---TTCEEEECBC
T ss_pred HHHHHHHHHHHHHCCC--EEEECCCcHHHHHHHHHHHHHHHHhcCCCCCeEEeccchhhhhHHHHHH---cCCeeecccc
Confidence 4578899999999964 8999999999999999998732 112333455665555554433333 3777776642
Q ss_pred ----------CCCCCcChhHHHhhccC----CceEEEEeccccccc-cccC---hHHHHHHhhhcCCEEEEecccccCcc
Q psy15216 1515 ----------KNNGLITLSQLEEKICS----DTILVSVMLVNNEIG-VIQP---ILEIGELCRSKGVIFHCDAAQAVGKI 1576 (2602)
Q Consensus 1515 ----------~~~~~id~d~l~~~i~~----~t~lv~l~~~~n~tG-~~~~---l~~I~~ia~~~gi~vivD~a~~~g~~ 1576 (2602)
...+.+|+++++++|++ .+.++++..++|..| .+.| +++|.++|++||+++|+|++|..+..
T Consensus 151 ~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~~g~~l~~D~~~~~~~~ 230 (465)
T d1ax4a_ 151 EKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENA 230 (465)
T ss_dssp GGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHH
T ss_pred cccCCCCCCCCccCccCHHHHHHHHHhhccccccceeeccccccCceecCCHHHHHHHHHHHHHcCCEEEEECcchhhhh
Confidence 12567999999999963 344566666655544 3344 77889999999999999999875432
Q ss_pred cc------cCCC-----------CCccEEEEccccccCCCceEEEEEecCCC--CccccccccCCccccCCCCCcchhHH
Q psy15216 1577 DI------NIQN-----------YKVDLMSFSAHKIYGPKGIGALYIRRNPR--TRIEAQIHGGGHEYGLRSGTLATHQI 1637 (2602)
Q Consensus 1577 ~~------~l~~-----------~~~D~~v~S~~K~~gp~G~G~l~~~~~~~--~~l~~~~~g~~~~~~~~~gt~~~~~~ 1637 (2602)
.. .... ...|++++|.||.+++++.|+++.+++.. .........+. .....+......+
T Consensus 231 ~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~k~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 308 (465)
T d1ax4a_ 231 YFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIGGLVAIRDNEEIFTLARQRCVPME--GFVTYGGLAGRDM 308 (465)
T ss_dssp HHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTCCSSCEEEEESSCHHHHHHHHHHHHHHT--CSTTTTTCCHHHH
T ss_pred cccccccccccccchhhhccccccccceeEeecccCcccccceeEeecchHHHHHhhhccccccc--cCCCcchhhHHHH
Confidence 11 0000 11589999999966655569988876421 11111100000 0011122222233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEE----ecCCc-----HHHHHhc--
Q psy15216 1638 VGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISF----NFIEG-----ESLLMAI-- 1706 (2602)
Q Consensus 1638 ~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~----~~~~~-----~~~~~~L-- 1706 (2602)
.++...+. ....+...++..+..++|.+.|.+ .++.+..+.. .....+.. +.... ..+...+
T Consensus 309 ~a~~~~~~--e~~~~~~~~~~~~~~~~l~~~L~~--~g~~~v~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 381 (465)
T d1ax4a_ 309 AAMVQGLE--EGTEEEYLHYRIGQVKYLGDRLRE--AGIPIQYPTG---GHAVFVDCKKLVPQIPGDQFPAQAVINALYL 381 (465)
T ss_dssp HHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHH--TTCCBCSSCC---SSEEEEESTTTCTTSCGGGCHHHHHHHHHHH
T ss_pred HHHhhhhH--HhhhHHHHHHHHHHHHHHHHHHHh--hcCccccCCC---cceeeeehhhhcCCCccccchhHHHHHHHHH
Confidence 32222221 112244556666778889999987 3444443221 12222211 11111 1122222
Q ss_pred -CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCC-CCCHHHHHHHHHHHHHh
Q psy15216 1707 -KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGR-FTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1707 -~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~-~~t~edid~li~~L~~~ 1765 (2602)
.||........... .....+.......+.+|++++. ..|.||||+++++|++.
T Consensus 382 ~~GI~~~~~~~~~~~------~~~~~g~~~~~~~~~vRlalP~~~~T~eeiD~vv~~l~~v 436 (465)
T d1ax4a_ 382 ESGVRAVEIGSFLLG------RDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGL 436 (465)
T ss_dssp HHCEECEEESHHHHC------BCTTTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHHHTT
T ss_pred hcCceeccccccccc------cccccCCccCCCCCceEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 46654322111000 0001122222234689999754 34999999999999974
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Probab=99.29 E-value=3.8e-12 Score=166.07 Aligned_cols=308 Identities=17% Similarity=0.127 Sum_probs=173.7
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccc---cccCCCEEEEcCCCCcccHHHHHHHHhCCcEEEEec
Q psy15216 41 KAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHF---YKKRGKHIITVQTEHKSVLDSIRKLENDGFRVTYLK 117 (2602)
Q Consensus 41 ~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~---~~~~gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~ 117 (2602)
+.+.++++++++++|.+ .+++++|+|+|+..++.++... ....+..++.+...|.++..... ..|..++.+.
T Consensus 75 ~~~~~le~~~a~l~g~~--~~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~i~~~~h~~t~~~~~~---~~g~~~~~~~ 149 (465)
T d1ax4a_ 75 RNYYDLKDKAKELFNYD--YIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVE---LNGCKAINIV 149 (465)
T ss_dssp HHHHHHHHHHHHHHCCC--EEEEESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEESSCCHHHHHHHH---HTTCEEEECB
T ss_pred hHHHHHHHHHHHHHCCC--EEEECCCcHHHHHHHHHHHHHHHHhcCCCCCeEEeccchhhhhHHHHH---HcCCeeeccc
Confidence 35678999999999964 8999999999999999998721 11223345555554444433333 3477777653
Q ss_pred c----------CCCCccChHHHHhhccC----CceEEEEecccCccc-cccc---HHHHHHHHHhcCCEEEEeccccccc
Q psy15216 118 P----------KNNGLITLSQLEEKICS----DTILVSVMLVNNEIG-VIQP---ILEIGELCRSKGVIFHCDAAQAVGK 179 (2602)
Q Consensus 118 ~----------~~~~~ld~e~l~~~i~~----~tklv~i~~~~npTG-~~~~---l~~I~~la~~~g~~livD~a~a~g~ 179 (2602)
. ...+.+|+++++++|++ .+.+++++.++|..| .+.| +++|.++|++||+++|+|++|..+.
T Consensus 150 ~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~~g~~l~~D~~~~~~~ 229 (465)
T d1ax4a_ 150 TEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCEN 229 (465)
T ss_dssp CGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHH
T ss_pred ccccCCCCCCCCccCccCHHHHHHHHHhhccccccceeeccccccCceecCCHHHHHHHHHHHHHcCCEEEEECcchhhh
Confidence 2 12577999999999963 345677777766655 3344 6788899999999999999986542
Q ss_pred ccc------cCCC-----------CCccEEEeccccccCCCCcEEEEEecCCCC--cccceecCCCccccccccCcchhH
Q psy15216 180 IDI------NIQN-----------YKVDLMSFSAHKIYGPKGIGALYIRRNPRT--RIEAQIHGGGHEYGLRSGTLATHQ 240 (2602)
Q Consensus 180 ~~~------dl~~-----------~~~D~~~~S~~K~~Gp~G~G~l~~~~~~~~--~l~~~~~g~~~~~~~~~gt~~~~~ 240 (2602)
... .... ...|++++|.+|.+++++.|+++.++.... ....... .....++.....
T Consensus 230 ~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~k~~~~~~~g~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 304 (465)
T d1ax4a_ 230 AYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIGGLVAIRDNEEIFTLARQRCV-----PMEGFVTYGGLA 304 (465)
T ss_dssp HHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTCCSSCEEEEESSCHHHHHHHHHHHH-----HHTCSTTTTTCC
T ss_pred hcccccccccccccchhhhccccccccceeEeecccCcccccceeEeecchHHHHHhhhcccc-----ccccCCCcchhh
Confidence 210 0000 115899999999777666799988764211 1111000 001111111111
Q ss_pred HHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEc----ccCh-----hHHHHHh
Q psy15216 241 IVGM-GEAFRLARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFN----FIEG-----ESLLMAI 310 (2602)
Q Consensus 241 ~~al-~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~----~~~~-----~~~~~~L 310 (2602)
..++ ..+........+...++..++.+++.+.|.+ .++.+..+.. .+...+... .... ......+
T Consensus 305 ~~~~~a~~~~~~e~~~~~~~~~~~~~~~~l~~~L~~--~g~~~v~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 379 (465)
T d1ax4a_ 305 GRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRLRE--AGIPIQYPTG---GHAVFVDCKKLVPQIPGDQFPAQAVINAL 379 (465)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH--TTCCBCSSCC---SSEEEEESTTTCTTSCGGGCHHHHHHHHH
T ss_pred HHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHh--hcCccccCCC---cceeeeehhhhcCCCccccchhHHHHHHH
Confidence 1111 1112122222355666677778899999987 3555544322 122222211 1111 1122222
Q ss_pred ---CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCC-CCCHHHHHHHHHHHHhh
Q psy15216 311 ---KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGR-FTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 311 ---~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~-~~t~edid~li~~L~~~ 369 (2602)
.||........... .....|.......+.+|+++.. ..|+||||+++++|++.
T Consensus 380 l~~~GI~~~~~~~~~~~------~~~~~g~~~~~~~~~vRlalP~~~~T~eeiD~vv~~l~~v 436 (465)
T d1ax4a_ 380 YLESGVRAVEIGSFLLG------RDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGL 436 (465)
T ss_dssp HHHHCEECEEESHHHHC------BCTTTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHHHTT
T ss_pred HHhcCceeccccccccc------cccccCCccCCCCCceEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 46544321110000 0001111111223689998753 34899999999999974
|
| >d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Plasmid segregation protein ParM species: Escherichia coli [TaxId: 562]
Probab=99.20 E-value=8.4e-12 Score=137.57 Aligned_cols=155 Identities=16% Similarity=0.157 Sum_probs=101.2
Q ss_pred ccceEEEEEeCCceEEEEEEEEECCEEEEEEEecCCCCcchHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHcc
Q psy15216 816 FEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLS 895 (2602)
Q Consensus 816 ~~~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~l~~~~e~~K~~LS 895 (2602)
..+++||+|+||||||+++++ ++...+....++..+||.++++.+.+++...+.... ......+ ++....
T Consensus 5 e~~~ilViDiGggTtDi~v~~--~~~~~~~~~~~~~~~G~~~i~~~i~~~l~~~~~~~~--~~~~~~~------~~~~~~ 74 (163)
T d2zgya2 5 ELDSLLIIDLGGTTLDISQVM--GKLSGISKIYGDSSLGVSLVTSAVKDALSLARTKGS--SYLADDI------IIHRKD 74 (163)
T ss_dssp TTCEEEEEEECSSCEEEEEEE--GGGCCEEEEEEECSCCTHHHHHHHHHHTTCCSBGGG--HHHHHHH------HHTTTC
T ss_pred CCCCEEEEECCCCcEEEEEEc--CCeEEEEEeeccccccchHHHHHHHHhhHHhhchhh--hhhHHHH------HHhhcc
Confidence 346899999999999999875 555667777788899999999999887754332111 1000111 110000
Q ss_pred cccceEEEEEecCCceEEEEeCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccceEEEecCccchHHHHHHHHhhccC
Q psy15216 896 YQSSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKT 975 (2602)
Q Consensus 896 ~~~~~~~~i~~~~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~a~~~~~~i~~V~LvGG~sr~P~v~~~l~~~f~~ 975 (2602)
... . .........++.+++++++.++.+.+.+.+.+ ....+++.|+|+||+|++ +++.|++.|+.
T Consensus 75 ~~~---~------~~~~~~~~~~~~i~~~i~~~~~~i~~~i~~~~----~~~~~~~~iil~GGGs~l--l~~~lk~~~~~ 139 (163)
T d2zgya2 75 NNY---L------KQRINDENKISIVTEAMNEALRKLEQRVLNTL----NEFSGYTHVMVIGGGAEL--ICDAVKKHTQI 139 (163)
T ss_dssp HHH---H------HHHSSSSCTHHHHHHHHHHHHHHHHHHHHHHH----TTCCCCCEEEEESTTHHH--HHHHHHHTSCC
T ss_pred ccc---c------cccchHHHHHHHHHHHHHHHHHHHHHHHHHhh----ccccccceEEEECchHHH--HHHHHHHHhCC
Confidence 000 0 00001122455666666666665555555544 345679999999999964 89999999963
Q ss_pred ---cccCcCCcchHhHHHHHHHh
Q psy15216 976 ---TLLTSIDPDKAVVFGAAIQA 995 (2602)
Q Consensus 976 ---~~~~~~~p~~aVa~GAa~~a 995 (2602)
.+....||..|+|+|+.++|
T Consensus 140 ~~~~v~i~~~P~~A~a~G~~~~g 162 (163)
T d2zgya2 140 RDERFFKTNNSQYDLVNGMYLIG 162 (163)
T ss_dssp CGGGEECCSCGGGHHHHHHHHHH
T ss_pred CCCCeEECCCcHhHHHHHHHHhc
Confidence 46678999999999998876
|
| >d1l5pa_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Trichomonas vaginalis [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: 2Fe-2S ferredoxin-like family: 2Fe-2S ferredoxin-related domain: 2Fe-2S ferredoxin species: Trichomonas vaginalis [TaxId: 5722]
Probab=99.18 E-value=4.7e-12 Score=122.02 Aligned_cols=71 Identities=18% Similarity=0.337 Sum_probs=62.8
Q ss_pred hccccCCCchhHHHHhcccc-hhhhcccccccccCcEEEccCccccCCCCHHHHHHhhcccCcccccccccccchhh
Q psy15216 1136 IFNENSGISLCDALLKNSIF-IEHACEKSCACATCHVIIREGFNEINKANEVEEDMLNKAWGLEENSRLSFDAKRGK 1211 (2602)
Q Consensus 1136 ~~~~~~g~~~~~~~~~~~~~-~~~~c~g~~~c~tch~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~srl~~d~~~~~ 1211 (2602)
+++..+|.+||+++++||++ +.+.|||.+.|+||||+|.++| +++++++|.+||+ +..++|||+||.+-.+
T Consensus 13 ~i~~~~G~tLl~al~~~gi~~i~~~CgG~~~C~tC~v~v~~g~--~~~~~~~E~~~l~---~~~~~~RLaCQi~l~~ 84 (93)
T d1l5pa_ 13 QLKFEDDQTLFTVLTEAGLMSADDTCQGNKACGKCICKHVSGK--VAAAEDDEKEFLE---DQPANARLACAITLSG 84 (93)
T ss_dssp EEECCTTEEHHHHHHTTTSSCCTTSCSSSSSSCCCEEEEEESC--CCCCCHHHHHHHT---TSCTTEEEGGGCEECG
T ss_pred EEEeCCCchHHHHHHHhCCCCccccccCCCEeCccEEEEcCCc--cCCCChHHHHHhh---ccCCCcEEEEEeEecc
Confidence 45778899999999999995 9999999999999999999875 7888999999996 5678999999988543
|
| >d1i7ha_ d.15.4.1 (A:) Adrenodoxin-like ferredoxin {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: 2Fe-2S ferredoxin-like family: 2Fe-2S ferredoxin-related domain: Adrenodoxin-like ferredoxin species: Escherichia coli [TaxId: 562]
Probab=99.16 E-value=8.1e-12 Score=125.22 Aligned_cols=73 Identities=59% Similarity=1.053 Sum_probs=70.1
Q ss_pred hccccCCCchhHHHHhcccchhhhcccccccccCcEEEccCccccCCCCHHHHHHhhcccCcccccccccccc
Q psy15216 1136 IFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVEEDMLNKAWGLEENSRLSFDAK 1208 (2602)
Q Consensus 1136 ~~~~~~g~~~~~~~~~~~~~~~~~c~g~~~c~tch~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~srl~~d~~ 1208 (2602)
+++...|.+||++++++|+.+.+.|||.++|+||||+|.++|+.+++++++|+++|....+..+++||+||++
T Consensus 17 ~v~~~~G~tLl~aa~~~gi~i~~~CgG~g~CgtC~v~v~~G~~~l~~~~~~E~~~l~~~~~~~~~~RLaCQ~~ 89 (109)
T d1i7ha_ 17 VLEANSGETILDAALRNGIEIEHACEKSCACTTCHCIVREGFDSLPESSEQEDDMLDKAWGLEPESRLSCQAR 89 (109)
T ss_dssp EEECCTTCBHHHHHHHTTCCCCCTTSSSSCCSTTEEEEEECGGGSCCCCHHHHHHHTTCTTCCTTEEETTTCB
T ss_pred EEEeCCCCcHHHHHHHcCCCCCcCCCCcceeCCeEEEeecCccccCCCChHHhhhhhccccCCCCeEEEEeeE
Confidence 6789999999999999999999999999999999999999999999999999999999988889999999986
|
| >d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Plasmid segregation protein ParM species: Escherichia coli [TaxId: 562]
Probab=99.16 E-value=7.6e-12 Score=137.93 Aligned_cols=154 Identities=17% Similarity=0.210 Sum_probs=100.3
Q ss_pred CceEEEEEeCCceEEEEEEEEeCCEEEEEEEecCCCCchhHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhcc
Q psy15216 2213 EGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSY 2292 (2602)
Q Consensus 2213 ~~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~ 2292 (2602)
.+++||+|+||||||+++++ ++...+....++..+||.++++.+.+++...+ ... .......+...... +..+..
T Consensus 6 ~~~ilViDiGggTtDi~v~~--~~~~~~~~~~~~~~~G~~~i~~~i~~~l~~~~-~~~-~~~~~~~~~~~~~~-~~~~~~ 80 (163)
T d2zgya2 6 LDSLLIIDLGGTTLDISQVM--GKLSGISKIYGDSSLGVSLVTSAVKDALSLAR-TKG-SSYLADDIIIHRKD-NNYLKQ 80 (163)
T ss_dssp TCEEEEEEECSSCEEEEEEE--GGGCCEEEEEEECSCCTHHHHHHHHHHTTCCS-BGG-GHHHHHHHHHTTTC-HHHHHH
T ss_pred CCCEEEEECCCCcEEEEEEc--CCeEEEEEeeccccccchHHHHHHHHhhHHhh-chh-hhhhHHHHHHhhcc-cccccc
Confidence 46899999999999999875 44556677778899999999999988775431 111 00000111000000 000000
Q ss_pred cceEEEEEEecCCceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccceEEEEeCccchHHHHHHHHhhcCC-
Q psy15216 2293 QSSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKT- 2371 (2602)
Q Consensus 2293 ~~~~~~~i~~~~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~- 2371 (2602)
.......++.+++++++.++.+.+.+.+.+ ....+++.|+|+||+|++ +++.|++.|+.
T Consensus 81 --------------~~~~~~~~~~i~~~i~~~~~~i~~~i~~~~----~~~~~~~~iil~GGGs~l--l~~~lk~~~~~~ 140 (163)
T d2zgya2 81 --------------RINDENKISIVTEAMNEALRKLEQRVLNTL----NEFSGYTHVMVIGGGAEL--ICDAVKKHTQIR 140 (163)
T ss_dssp --------------HSSSSCTHHHHHHHHHHHHHHHHHHHHHHH----TTCCCCCEEEEESTTHHH--HHHHHHHTSCCC
T ss_pred --------------cchHHHHHHHHHHHHHHHHHHHHHHHHHhh----ccccccceEEEECchHHH--HHHHHHHHhCCC
Confidence 001123455566666666665555555444 345679999999999964 89999999963
Q ss_pred --cccCCCCccchhhhHHHHHh
Q psy15216 2372 --TLLTSIDPDKAVVFGAAIQA 2391 (2602)
Q Consensus 2372 --~~~~~~~p~~aVa~GAa~~a 2391 (2602)
.+....||..|+|+|+.++|
T Consensus 141 ~~~v~i~~~P~~A~a~G~~~~g 162 (163)
T d2zgya2 141 DERFFKTNNSQYDLVNGMYLIG 162 (163)
T ss_dssp GGGEECCSCGGGHHHHHHHHHH
T ss_pred CCCeEECCCcHhHHHHHHHHhc
Confidence 46788999999999999876
|
| >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Acetylornithine/acetyl-lysine aminotransferase ArgD species: Thermus thermophilus [TaxId: 274]
Probab=99.07 E-value=6.4e-09 Score=130.08 Aligned_cols=310 Identities=13% Similarity=0.122 Sum_probs=191.4
Q ss_pred CCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCC
Q psy15216 7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRG 86 (2602)
Q Consensus 7 ~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~g 86 (2602)
+-..|.+.+++.+.+......+.. .. .+...++.+.+........+.+.|++|+++|+..+++.... ....
T Consensus 52 Gh~hp~v~~a~~~~~~~~~~~~~~---~~----~~~~~~la~~l~~~~~~~~~~v~f~~sGseA~e~Aik~Ar~--~t~r 122 (387)
T d1vefa1 52 GHGNPEVVEAVKRQAETLMAMPQT---LP----TPMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARA--HTGR 122 (387)
T ss_dssp CBTCHHHHHHHHHHHHHCCCCCTT---SC----CHHHHHHHHHHHHTSCTTEEEEEEESSHHHHHHHHHHHHHH--HHSC
T ss_pred cCCcHHHHHHHHHHHHhhcccccc---cC----CchHHHHHHHhhhhccccceeeccccCchHHHHHHHHHHHh--hccc
Confidence 345789999999998864333321 11 12233333444444333334699999999999999998763 2345
Q ss_pred CEEEEcCCCCcccHHHHHHHH-----hC-----CcEEEEeccCCCCccChHHHHhhccCCceEEEEecccCccccccc--
Q psy15216 87 KHIITVQTEHKSVLDSIRKLE-----ND-----GFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP-- 154 (2602)
Q Consensus 87 d~Vlv~~~~~~s~~~~~~~~~-----~~-----G~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~-- 154 (2602)
..|+.....|+........+- +. -..+..+|. .|++.|++.+.+++.+|++.......|...+
T Consensus 123 ~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~p~~~~~~~~p~-----~d~~~l~~~~~~~iAavi~EPi~g~~G~~~~~~ 197 (387)
T d1vefa1 123 KKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPY-----NDVEALKRAVDEETAAVILEPVQGEGGVRPATP 197 (387)
T ss_dssp CEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECT-----TCHHHHHHHCCTTEEEEEECSEETTTTSEECCH
T ss_pred ceecccccCCCCCccceEeccCCccccCCCCCCCCCceEeCC-----CCHHHHHHhcCCCeEEEEEECCCCCCCCccCCH
Confidence 677777777766433332220 00 012334442 3789999999999999999888877887776
Q ss_pred --HHHHHHHHHhcCCEEEEecccc-cccccc----cCCCCCccEEEecccc-cc-CCCCcEEEEEecCCCCcccceecCC
Q psy15216 155 --ILEIGELCRSKGVIFHCDAAQA-VGKIDI----NIQNYKVDLMSFSAHK-IY-GPKGIGALYIRRNPRTRIEAQIHGG 225 (2602)
Q Consensus 155 --l~~I~~la~~~g~~livD~a~a-~g~~~~----dl~~~~~D~~~~S~~K-~~-Gp~G~G~l~~~~~~~~~l~~~~~g~ 225 (2602)
+++|.++|++||+++|+|+++. +|-... ..-+..+|+++++ | +. |.+ ++.+..+++....+.+...+.
T Consensus 198 ~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~~~~~~~v~PDi~~~g--K~l~gG~~-~~~~~~~~~~~~~~~~~~~g~ 274 (387)
T d1vefa1 198 EFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPDILTLA--KALGGGVP-LGVAVMREEVARSMPKGGHGT 274 (387)
T ss_dssp HHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEEC--GGGGTTSS-CEEEEEEHHHHHTSCTTSSCC
T ss_pred HHHHHHHHHHHHcCceEEecccccccCccCCCcccccCCcCCceeeec--ccCCCCcc-ccccccceeeeeccccCCccc
Confidence 8999999999999999999985 332211 1112347999876 8 33 333 566677766555554433211
Q ss_pred CccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcc-CceEEeCCCCCCCCceEEEEEcccChh
Q psy15216 226 GHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESI-EEIYINGDMNNRIPHNLNISFNFIEGE 304 (2602)
Q Consensus 226 ~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~-~g~~l~~~~~~~~~~~~~~~~~~~~~~ 304 (2602)
..+.++.+.++..+.|+.+.. .+..++..++.+++.++|.+.. +.+.-+. .......+.+......
T Consensus 275 -------T~~gnPla~aaa~a~L~~l~~--~~~~~~v~~~g~~l~~~L~~l~~~~v~~vr----g~Gl~~~ie~~~~~~~ 341 (387)
T d1vefa1 275 -------TFGGNPLAMAAGVAAIRYLER--TRLWERAAELGPWFMEKLRAIPSPKIREVR----GMGLMVGLELKEKAAP 341 (387)
T ss_dssp -------SSTTCHHHHHHHHHHHHHHHH--HTTHHHHHHHHHHHHHHHHTSCCTTEEEEE----EETTEEEEEESSCSHH
T ss_pred -------cCCCCcchhhhcccchhhccc--ccccchHhhhhHHHHHHHHhcCCCceEEEe----ecceEEEEEEeCCchH
Confidence 224466777777778885543 3556667777778888886511 1111110 0112334455443333
Q ss_pred HHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 305 SLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 305 ~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
.+...+ .++.+.+. ..+.+|+++....|++|++.+++++++.
T Consensus 342 ~~~~~~~~~g~l~~~~-----------------------g~~~ir~~Ppl~it~~~ld~~~~~i~~a 385 (387)
T d1vefa1 342 YIARLEKEHRVLALQA-----------------------GPTVIRFLPPLVIEKEDLERVVEAVRAV 385 (387)
T ss_dssp HHHHHHHHHCEECEES-----------------------STTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCeEEec-----------------------CCCEEEEECCccCCHHHHHHHHHHHHHH
Confidence 333332 45544311 1267999988888999999999999864
|
| >d1e4ft2 c.55.1.1 (T:200-390) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Cell division protein FtsA species: Thermotoga maritima [TaxId: 2336]
Probab=99.04 E-value=1.9e-10 Score=129.19 Aligned_cols=157 Identities=20% Similarity=0.183 Sum_probs=112.6
Q ss_pred cceEEEEEeCCceEEEEEEEEECCEEEEEEEecCCCCcchHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHccc
Q psy15216 817 EGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSY 896 (2602)
Q Consensus 817 ~~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~l~~~~e~~K~~LS~ 896 (2602)
+..++|+|+|+||+|+++++ ++.+.-... ..+||++|++.|...+.- -...||++|+.+..
T Consensus 6 ~~Gv~vvDiG~~tt~i~i~~--~G~l~~~~~---i~~GG~~iT~~Ia~~l~i--------------~~~~AE~iK~~~g~ 66 (191)
T d1e4ft2 6 DRGVVVVNLGYNFTGLIAYK--NGVPIKISY---VPVGMKHVIKDVSAVLDT--------------SFEESERLIITHGN 66 (191)
T ss_dssp HHCEEEEEECSSCEEEEEEE--TTEEEEEEE---ESCCHHHHHHHHHHHHTC--------------CHHHHHHHHHHHCC
T ss_pred hCCEEEEEeCCCcEEEEEEE--CCeEEEEEE---EeeChHHHHHHHHHHhcc--------------cHHHHHHHHhhccc
Confidence 45689999999999999965 454433332 569999999998865531 13689999998643
Q ss_pred c-----cceEEEEEecCCceEEEEeCHHHHHHHHHHHHHHHHHHHHHHHHHcCCC------ccccceEEEecCccchHHH
Q psy15216 897 Q-----SSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLT------IKDINNVILVGGSTRMKHI 965 (2602)
Q Consensus 897 ~-----~~~~~~i~~~~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~a~~~------~~~i~~V~LvGG~sr~P~v 965 (2602)
. ....+.+...+ ......+++..+.+++++.++++...+.+.++..... ...+..|+|+||+|++|.+
T Consensus 67 ~~~~~~~~~~i~~~~~~-~~~~~~~~~~~l~~ii~~~~~ei~~~i~~~~~~~~~~~~~~~~~~~~~~IvLtGGgs~l~gl 145 (191)
T d1e4ft2 67 AVYNDLKEEEIQYRGLD-GNTIKTTTAKKLSVIIHARLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRI 145 (191)
T ss_dssp SCCTTCCCCEEEEECTT-SSCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CGGGCEEEESGGGGSTTH
T ss_pred cccccccchhccccccc-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhcccccCceEEEecchhhhhhH
Confidence 2 12223333222 3334578899999999999999998888888764211 1224569999999999999
Q ss_pred HHHHHhhccCcccC-----------------cCCcchHhHHHHHH
Q psy15216 966 HEGVSNFFKTTLLT-----------------SIDPDKAVVFGAAI 993 (2602)
Q Consensus 966 ~~~l~~~f~~~~~~-----------------~~~p~~aVa~GAa~ 993 (2602)
.+.+++.|+.++.. -.+|..++|.|.++
T Consensus 146 ~~~l~~~l~~~Vri~~~~~~~~~~~~~~~~~~~~P~~ata~Gl~l 190 (191)
T d1e4ft2 146 NELATEVFKSPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVF 190 (191)
T ss_dssp HHHHHHHHCSCEEECCGGGSSSCCEETCHHHHTCGGGHHHHHHHT
T ss_pred HHHHHHHHCCCeEEeCCccccccccCCcHHhhcCcHHHHHHHHHh
Confidence 99999999765421 12688899999875
|
| >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Acetylornithine/acetyl-lysine aminotransferase ArgD species: Thermus thermophilus [TaxId: 274]
Probab=99.03 E-value=2.6e-08 Score=124.42 Aligned_cols=308 Identities=14% Similarity=0.143 Sum_probs=188.3
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCC
Q psy15216 1404 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK 1483 (2602)
Q Consensus 1404 ~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd 1483 (2602)
--.+++.+++.+.++.....+.. ... +...++.+.+.+......+.+.|++++++|+..+++.... .....
T Consensus 53 h~hp~v~~a~~~~~~~~~~~~~~-~~~------~~~~~la~~l~~~~~~~~~~v~f~~sGseA~e~Aik~Ar~--~t~r~ 123 (387)
T d1vefa1 53 HGNPEVVEAVKRQAETLMAMPQT-LPT------PMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARA--HTGRK 123 (387)
T ss_dssp BTCHHHHHHHHHHHHHCCCCCTT-SCC------HHHHHHHHHHHHTSCTTEEEEEEESSHHHHHHHHHHHHHH--HHSCC
T ss_pred CCcHHHHHHHHHHHHhhcccccc-cCC------chHHHHHHHhhhhccccceeeccccCchHHHHHHHHHHHh--hcccc
Confidence 34789999999998875433332 111 1223333444444333334699999999999999988753 23456
Q ss_pred EEEEcCCCCcchHHHHHHHH-----hCC-----cEEEEeccCCCCCcChhHHHhhccCCceEEEEeccccccccccC---
Q psy15216 1484 HIITVQTEHKSVLDSIRKLE-----NDG-----FRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQP--- 1550 (2602)
Q Consensus 1484 ~Vlv~~~~~~s~~~~~~~~~-----~~G-----~~v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~--- 1550 (2602)
.|+.....|+........+. ..+ ..+..+|. -|.+.|++.+.+++.+|++..+....|...|
T Consensus 124 ~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~p~~~~~~~~p~-----~d~~~l~~~~~~~iAavi~EPi~g~~G~~~~~~~ 198 (387)
T d1vefa1 124 KFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPY-----NDVEALKRAVDEETAAVILEPVQGEGGVRPATPE 198 (387)
T ss_dssp EEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECT-----TCHHHHHHHCCTTEEEEEECSEETTTTSEECCHH
T ss_pred eecccccCCCCCccceEeccCCccccCCCCCCCCCceEeCC-----CCHHHHHHhcCCCeEEEEEECCCCCCCCccCCHH
Confidence 78887777666432222220 000 12333332 3789999999999999999888888888766
Q ss_pred -hHHHHHHhhhcCCEEEEecccc-cCccc----ccCCCCCccEEEEcccc-cc-CCCceEEEEEecCCCCccccccccCC
Q psy15216 1551 -ILEIGELCRSKGVIFHCDAAQA-VGKID----INIQNYKVDLMSFSAHK-IY-GPKGIGALYIRRNPRTRIEAQIHGGG 1622 (2602)
Q Consensus 1551 -l~~I~~ia~~~gi~vivD~a~~-~g~~~----~~l~~~~~D~~v~S~~K-~~-gp~G~G~l~~~~~~~~~l~~~~~g~~ 1622 (2602)
+++|.++|++||+++|.|+++. +|-.- .......+|+++++ | +. |.+ ++.+..+++....+.+...++
T Consensus 199 ~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~~~~~~~v~PDi~~~g--K~l~gG~~-~~~~~~~~~~~~~~~~~~~g~- 274 (387)
T d1vefa1 199 FLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPDILTLA--KALGGGVP-LGVAVMREEVARSMPKGGHGT- 274 (387)
T ss_dssp HHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEEC--GGGGTTSS-CEEEEEEHHHHHTSCTTSSCC-
T ss_pred HHHHHHHHHHHcCceEEecccccccCccCCCcccccCCcCCceeeec--ccCCCCcc-ccccccceeeeeccccCCccc-
Confidence 9999999999999999999985 33221 11113457998876 8 43 333 566666765554444332211
Q ss_pred ccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CcEE-EeCCCCCCCCceEEEEEecCCcH
Q psy15216 1623 HEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESI-EEIY-INGDMNNRIPHNLNISFNFIEGE 1700 (2602)
Q Consensus 1623 ~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~-~gl~-i~~~~~~~~~~~~~~~~~~~~~~ 1700 (2602)
..+.++.+.++..+.|+.+.. .+..++...+.+++.+.|++.. +.+. +.+ ...+..+.+......
T Consensus 275 ------T~~gnPla~aaa~a~L~~l~~--~~~~~~v~~~g~~l~~~L~~l~~~~v~~vrg-----~Gl~~~ie~~~~~~~ 341 (387)
T d1vefa1 275 ------TFGGNPLAMAAGVAAIRYLER--TRLWERAAELGPWFMEKLRAIPSPKIREVRG-----MGLMVGLELKEKAAP 341 (387)
T ss_dssp ------SSTTCHHHHHHHHHHHHHHHH--HTTHHHHHHHHHHHHHHHHTSCCTTEEEEEE-----ETTEEEEEESSCSHH
T ss_pred ------cCCCCcchhhhcccchhhccc--ccccchHhhhhHHHHHHHHhcCCCceEEEee-----cceEEEEEEeCCchH
Confidence 113355566666677775543 3455666777778888887621 1111 110 122334444433333
Q ss_pred HHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1701 SLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1701 ~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
.+...+ +++.+.+.. .+.+|+++....|.+|++++++++++.
T Consensus 342 ~~~~~~~~~g~l~~~~g-----------------------~~~ir~~Ppl~it~~~ld~~~~~i~~a 385 (387)
T d1vefa1 342 YIARLEKEHRVLALQAG-----------------------PTVIRFLPPLVIEKEDLERVVEAVRAV 385 (387)
T ss_dssp HHHHHHHHHCEECEESS-----------------------TTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCeEEecC-----------------------CCEEEEECCccCCHHHHHHHHHHHHHH
Confidence 333322 455543211 267999988889999999999999875
|
| >d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase subunit 2 (P-protein) species: Thermus thermophilus [TaxId: 274]
Probab=99.03 E-value=1.4e-08 Score=128.18 Aligned_cols=334 Identities=14% Similarity=0.115 Sum_probs=214.5
Q ss_pred CCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCC--
Q psy15216 9 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRG-- 86 (2602)
Q Consensus 9 ~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~g-- 86 (2602)
.+|.+.+.+.+++..+ .|.. ....+....+.+-+++..++++.|.+-.+.-+-.|+|.+-..++.+..- ..+.+
T Consensus 77 y~P~v~~~~~~~~TaY--TPYQ-PaEiSQG~LQalfEfQtmi~eLTGMdvaNaS~yDGatA~aeA~~ma~r~-~~~~~~~ 152 (471)
T d1wyub1 77 YNPKLHEEAARLFADL--HPYQ-DPRTAQGALRLMWELGEYLKALTGMDAITLEPAAGAHGELTGILIIRAY-HEDRGEG 152 (471)
T ss_dssp CCCHHHHHHHHTTSSC--CTTS-CGGGCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHHHH-HHHTTCT
T ss_pred cCcchhhhHHHHHhcc--CCCC-CHHHHHHHHHHHHHHHHHHHHHhCCCccccccchHHHHHHHHHHHHHHH-hhhcccc
Confidence 4567777776543221 2222 1133566778888999999999999755555566777665555554320 00111
Q ss_pred --CEEEEcCCCCcccHHHHHHHHhCCcEEEEeccCCCCccChHHHHhhccCCceEEEEecccCcccccccHHHHHHHHHh
Q psy15216 87 --KHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRS 164 (2602)
Q Consensus 87 --d~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~ld~e~l~~~i~~~tklv~i~~~~npTG~~~~l~~I~~la~~ 164 (2602)
..+++..+.++....... ...+..++.++.+..+..+.+.+......++..+++.+|++.-+.....+++++++|+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~v~v~~p~~~g~~e~~~~~~~~~~h~ 230 (471)
T d1wyub1 153 RTRRVVLVPDSAHGSNPATA--SMAGYQVREIPSGPEGEVDLEALKRELGPHVAALMLTNPNTLGLFERRILEISRLCKE 230 (471)
T ss_dssp TTCCEEEEETTSCTHHHHHH--HHTTCEEEEECBCTTSSBCHHHHHHHCSTTEEEEEECSSCTTSCCCTTHHHHHHHHHH
T ss_pred cccccccCCcccccceeeee--ecccceeecccccccccccchhhhhhhhccccceeeccCCCcccccchhhhhHHHHHh
Confidence 233444444444433332 2347888888888888899999999999999999999998866565669999999999
Q ss_pred cCCEEEEeccccccccc-ccCCCCCccEEEecccccc------CCCCcEEEEEecCCCCcccceecCCCc---------c
Q psy15216 165 KGVIFHCDAAQAVGKID-INIQNYKVDLMSFSAHKIY------GPKGIGALYIRRNPRTRIEAQIHGGGH---------E 228 (2602)
Q Consensus 165 ~g~~livD~a~a~g~~~-~dl~~~~~D~~~~S~~K~~------Gp~G~G~l~~~~~~~~~l~~~~~g~~~---------~ 228 (2602)
.+..+++|.+....... ......+.|+++..-++.+ |.+|+|++.+++++..+++-.+.+.+. +
T Consensus 231 ~g~~~~~~~~~~~~~~~l~~p~~~g~div~vg~~q~~G~P~~~GGP~~G~~a~~~~~~R~~PGRiV~~~~~~~~~~~~RE 310 (471)
T d1wyub1 231 AGVQLYYDGANLNAIMGWARPGDMGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLPVPLVERGEEGFYLDFDRP 310 (471)
T ss_dssp HTCEEEEEGGGGGGTTTTCCHHHHTCSEEECCTTTTTCCCCTTSCCCCCCEEECGGGGGGCCSCEEEECSSCEEEECCCT
T ss_pred ccccccccccchhhhhhccccCcccccccccccccccccccccccccccceeehhhhhccCCCceecCCCccccccCCCc
Confidence 99999999875433221 1122346788888778833 455689999999887777543322211 1
Q ss_pred ---ccccccCcchhHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEcc-cCh
Q psy15216 229 ---YGLRSGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEG 303 (2602)
Q Consensus 229 ---~~~~~gt~~~~~~~al~~al~-~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~-~~~ 303 (2602)
++...+|.+.....++...+. +..+++.+...++..++.++.++|+. +|+++..+. . .-+-+.+.++. .+.
T Consensus 311 qhIrRe~actnqaL~al~A~vYlsllG~~GL~elA~~~~~~A~Yla~~L~~--~G~~~~~~~-~-ff~EFvv~~~~~~~~ 386 (471)
T d1wyub1 311 KSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKE--KGYRVPYDG-P-SMHEFVAQPPEGFRA 386 (471)
T ss_dssp TCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTCBCSSCS-S-CCSCEEEBCSTTCCH
T ss_pred ccccchhhhhhhHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHhh--cCceeccCc-c-eeeEEeecCCCCCCH
Confidence 112224444333333323333 45578999999999999999999965 788875332 2 22334444443 345
Q ss_pred hHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhhh
Q psy15216 304 ESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKE 370 (2602)
Q Consensus 304 ~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~~ 370 (2602)
.++.++| +|+.- +....+ ...++.+-|++.=-+|.+|||+|+++|++..
T Consensus 387 ~~i~k~L~~~G~~~--~~~~~p----------------~~~~~~llv~vTE~~tkedID~lv~aL~~i~ 437 (471)
T d1wyub1 387 LDLAKGLLELGFHP--PTVYFP----------------LIVKEALMVEPTETEAKETLEAFAEAMGALL 437 (471)
T ss_dssp HHHHHHHHHTTCCC--CEESCS----------------TTSTTCEEECCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCC--CcccCc----------------CCCCCeEEEecCCCCCHHHHHHHHHHHHHHH
Confidence 6677766 66642 211111 1224678899988899999999999999854
|
| >d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase subunit 2 (P-protein) species: Thermus thermophilus [TaxId: 274]
Probab=98.99 E-value=2.4e-08 Score=125.85 Aligned_cols=335 Identities=13% Similarity=0.090 Sum_probs=211.7
Q ss_pred CCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhh---hhccC
Q psy15216 1405 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAH---FYKKR 1481 (2602)
Q Consensus 1405 ~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~---~~~~~ 1481 (2602)
.++.+.+.+..++. ...|..+ ...+++..+.+-+....|+++.|.+-.+.-.-.|+|.....++++..- .....
T Consensus 77 y~P~v~~~~~~~~T--aYTPYQP-aEiSQG~LQalfEfQtmi~eLTGMdvaNaS~yDGatA~aeA~~ma~r~~~~~~~~~ 153 (471)
T d1wyub1 77 YNPKLHEEAARLFA--DLHPYQD-PRTAQGALRLMWELGEYLKALTGMDAITLEPAAGAHGELTGILIIRAYHEDRGEGR 153 (471)
T ss_dssp CCCHHHHHHHHTTS--SCCTTSC-GGGCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred cCcchhhhHHHHHh--ccCCCCC-HHHHHHHHHHHHHHHHHHHHHhCCCccccccchHHHHHHHHHHHHHHHhhhccccc
Confidence 44566666655332 2234431 123677788889999999999999855554556777665655555431 00011
Q ss_pred CCEEEEcCCCCcchHHHHHHHHhCCcEEEEeccCCCCCcChhHHHhhccCCceEEEEeccccccccccChHHHHHHhhhc
Q psy15216 1482 GKHIITVQTEHKSVLDSIRKLENDGFRVTYLKPKNNGLITLSQLEEKICSDTILVSVMLVNNEIGVIQPILEIGELCRSK 1561 (2602)
Q Consensus 1482 gd~Vlv~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~id~d~l~~~i~~~t~lv~l~~~~n~tG~~~~l~~I~~ia~~~ 1561 (2602)
...+++..+.|+....... ...+..++.++.+..+..+.+.+.+....++..+++.+|++.-+.-...+++.++++++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~v~v~~p~~~g~~e~~~~~~~~~~h~~ 231 (471)
T d1wyub1 154 TRRVVLVPDSAHGSNPATA--SMAGYQVREIPSGPEGEVDLEALKRELGPHVAALMLTNPNTLGLFERRILEISRLCKEA 231 (471)
T ss_dssp TCCEEEEETTSCTHHHHHH--HHTTCEEEEECBCTTSSBCHHHHHHHCSTTEEEEEECSSCTTSCCCTTHHHHHHHHHHH
T ss_pred ccccccCCcccccceeeee--ecccceeecccccccccccchhhhhhhhccccceeeccCCCcccccchhhhhHHHHHhc
Confidence 1234444444444333322 23478888888887888999999999999999999999977544444588999999999
Q ss_pred CCEEEEecccccCcc-cccCCCCCccEEEEcccccc------CCCceEEEEEecCCCCccccccccCCc-----------
Q psy15216 1562 GVIFHCDAAQAVGKI-DINIQNYKVDLMSFSAHKIY------GPKGIGALYIRRNPRTRIEAQIHGGGH----------- 1623 (2602)
Q Consensus 1562 gi~vivD~a~~~g~~-~~~l~~~~~D~~v~S~~K~~------gp~G~G~l~~~~~~~~~l~~~~~g~~~----------- 1623 (2602)
+..+++|.+...... .......+.|.++.+.|+.+ |.+|+|++.+++++...+...+.+.+.
T Consensus 232 g~~~~~~~~~~~~~~~l~~p~~~g~div~vg~~q~~G~P~~~GGP~~G~~a~~~~~~R~~PGRiV~~~~~~~~~~~~REq 311 (471)
T d1wyub1 232 GVQLYYDGANLNAIMGWARPGDMGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLPVPLVERGEEGFYLDFDRPK 311 (471)
T ss_dssp TCEEEEEGGGGGGTTTTCCHHHHTCSEEECCTTTTTCCCCTTSCCCCCCEEECGGGGGGCCSCEEEECSSCEEEECCCTT
T ss_pred cccccccccchhhhhhccccCcccccccccccccccccccccccccccceeehhhhhccCCCceecCCCccccccCCCcc
Confidence 999999987543221 12223456788888888833 445589999999877766544332211
Q ss_pred -cccCCCCCcchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEeCCCCCCCCceEEEEEec-CCcH
Q psy15216 1624 -EYGLRSGTLATHQIVGMGEAFR-LARIEMKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNF-IEGE 1700 (2602)
Q Consensus 1624 -~~~~~~gt~~~~~~~al~~aL~-~~~~~~~~~~~~~~~l~~~l~~~L~~~~~gl~i~~~~~~~~~~~~~~~~~~-~~~~ 1700 (2602)
-.+...+|.......+....+. +..+++.++.++...++.|+.++|.. +|+.+..+ .. +.+-+.+.++. .+..
T Consensus 312 hIrRe~actnqaL~al~A~vYlsllG~~GL~elA~~~~~~A~Yla~~L~~--~G~~~~~~-~~-ff~EFvv~~~~~~~~~ 387 (471)
T d1wyub1 312 SIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKE--KGYRVPYD-GP-SMHEFVAQPPEGFRAL 387 (471)
T ss_dssp CCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTCBCSSC-SS-CCSCEEEBCSTTCCHH
T ss_pred cccchhhhhhhHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHhh--cCceeccC-cc-eeeEEeecCCCCCCHH
Confidence 1122334444322222223333 56688999999999999999999976 78776532 22 22333333332 3445
Q ss_pred HHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHhh
Q psy15216 1701 SLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMKE 1766 (2602)
Q Consensus 1701 ~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~~ 1766 (2602)
++.+.| +|+.- +....+ ....+.+-+++.--+|.+|||+++++|++..
T Consensus 388 ~i~k~L~~~G~~~--~~~~~p----------------~~~~~~llv~vTE~~tkedID~lv~aL~~i~ 437 (471)
T d1wyub1 388 DLAKGLLELGFHP--PTVYFP----------------LIVKEALMVEPTETEAKETLEAFAEAMGALL 437 (471)
T ss_dssp HHHHHHHHTTCCC--CEESCS----------------TTSTTCEEECCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCC--CcccCc----------------CCCCCeEEEecCCCCCHHHHHHHHHHHHHHH
Confidence 666666 56532 211111 1123678899988899999999999999853
|
| >d1e4ft2 c.55.1.1 (T:200-390) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Cell division protein FtsA species: Thermotoga maritima [TaxId: 2336]
Probab=98.98 E-value=3.8e-10 Score=126.61 Aligned_cols=156 Identities=19% Similarity=0.177 Sum_probs=111.2
Q ss_pred ceEEEEEeCCceEEEEEEEEeCCEEEEEEEecCCCCchhHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhccc
Q psy15216 2214 GIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQ 2293 (2602)
Q Consensus 2214 ~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~ 2293 (2602)
..++|+|+|+||+|+++++ ++.+.-. ....+||++|++.|...+.-. ..+||+.|+.+...
T Consensus 7 ~Gv~vvDiG~~tt~i~i~~--~G~l~~~---~~i~~GG~~iT~~Ia~~l~i~--------------~~~AE~iK~~~g~~ 67 (191)
T d1e4ft2 7 RGVVVVNLGYNFTGLIAYK--NGVPIKI---SYVPVGMKHVIKDVSAVLDTS--------------FEESERLIITHGNA 67 (191)
T ss_dssp HCEEEEEECSSCEEEEEEE--TTEEEEE---EEESCCHHHHHHHHHHHHTCC--------------HHHHHHHHHHHCCS
T ss_pred CCEEEEEeCCCcEEEEEEE--CCeEEEE---EEEeeChHHHHHHHHHHhccc--------------HHHHHHHHhhcccc
Confidence 4689999999999999965 4433222 226799999999888755421 36789999986432
Q ss_pred -----ceEEEEEEecCCceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc------cccceEEEEeCccchHHHH
Q psy15216 2294 -----SSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTI------KDINNVILVGGSTRMKHIH 2362 (2602)
Q Consensus 2294 -----~~~~~~i~~~~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~~~~~~------~~i~~V~LvGG~s~~p~v~ 2362 (2602)
....+.+...++ .....+++..+.+++++.++++...+.+.++...... .-+..|+|+||+|++|.+.
T Consensus 68 ~~~~~~~~~i~~~~~~~-~~~~~~~~~~l~~ii~~~~~ei~~~i~~~~~~~~~~~~~~~~~~~~~~IvLtGGgs~l~gl~ 146 (191)
T d1e4ft2 68 VYNDLKEEEIQYRGLDG-NTIKTTTAKKLSVIIHARLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRIN 146 (191)
T ss_dssp CCTTCCCCEEEEECTTS-SCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CGGGCEEEESGGGGSTTHH
T ss_pred ccccccchhcccccccC-CCcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhcccccCceEEEecchhhhhhHH
Confidence 222233332222 3445788999999999999999988888887542211 1245699999999999999
Q ss_pred HHHHhhcCCcccC-----------------CCCccchhhhHHHH
Q psy15216 2363 EGVSNFFKTTLLT-----------------SIDPDKAVVFGAAI 2389 (2602)
Q Consensus 2363 ~~l~~~f~~~~~~-----------------~~~p~~aVa~GAa~ 2389 (2602)
+.+++.|+.++.. ..+|..++|.|.++
T Consensus 147 ~~l~~~l~~~Vri~~~~~~~~~~~~~~~~~~~~P~~ata~Gl~l 190 (191)
T d1e4ft2 147 ELATEVFKSPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVF 190 (191)
T ss_dssp HHHHHHHCSCEEECCGGGSSSCCEETCHHHHTCGGGHHHHHHHT
T ss_pred HHHHHHHCCCeEEeCCccccccccCCcHHhhcCcHHHHHHHHHh
Confidence 9999999865421 12677888999875
|
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.97 E-value=1.6e-08 Score=127.27 Aligned_cols=311 Identities=15% Similarity=0.152 Sum_probs=192.9
Q ss_pred CCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhccccc----
Q psy15216 7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFY---- 82 (2602)
Q Consensus 7 ~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~---- 82 (2602)
+-.+|.+.+++.+.+......+.. .. .....++.+.++++.+. +.+.+++++++|+..+++......
T Consensus 56 Gh~~p~i~~Av~~q~~~~~~~~~~---~~----~~~~~~~~~~~~~~~~~--~~v~~~~sGseA~e~Aik~ar~~~~~~~ 126 (404)
T d2byla1 56 GHCHPKIVNALKSQVDKLTLTSRA---FY----NNVLGEYEEYITKLFNY--HKVLPMNTGVEAGETACKLARKWGYTVK 126 (404)
T ss_dssp CBTCHHHHHHHHHHHTTCCCCCTT---EE----ESSHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHHHhhCCCcccc---cc----cchHHHHHHhhhhcccc--cccccccCccccchhHHHHHHHHhhhcc
Confidence 446789999999988763222211 11 12345566777888765 589999999999999998865211
Q ss_pred --ccCCCEEEEcCCCCcccHHHHHHH-----HhCC-----cEEEEeccCCCCccChHHHHhhccC-CceEEEEecccCcc
Q psy15216 83 --KKRGKHIITVQTEHKSVLDSIRKL-----ENDG-----FRVTYLKPKNNGLITLSQLEEKICS-DTILVSVMLVNNEI 149 (2602)
Q Consensus 83 --~~~gd~Vlv~~~~~~s~~~~~~~~-----~~~G-----~~v~~v~~~~~~~ld~e~l~~~i~~-~tklv~i~~~~npT 149 (2602)
......++.....|+......... .+.+ ..+..+|. .|++++++.+.+ +..+|++.......
T Consensus 127 ~~~~~~~~i~~~~~~~hg~t~~~~~~~~~~~~~~~~~p~~~~~~~~p~-----~d~~~l~~~l~~~~iAaviiEPi~g~~ 201 (404)
T d2byla1 127 GIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPY-----NDLPALERALQDPNVAAFMVEPIQGEA 201 (404)
T ss_dssp CCCTTCCEEEEETTCCCCCSHHHHTTCCCHHHHTTSCSCCTTEEEECT-----TCHHHHHHHHTSTTEEEEEECSSBTTT
T ss_pred ccccccccccccCCCccccccceeccCCCcccccCCCCCCCCeeEecc-----cCHHHHHHhcCCCCeEEEEECCccCCC
Confidence 012345665555555432222111 0111 11223332 378999999864 56678877777778
Q ss_pred ccccc----HHHHHHHHHhcCCEEEEecccc-ccccc--c--cCCCCCccEEEecccc-cc-CCCCcEEEEEecCCCCcc
Q psy15216 150 GVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKID--I--NIQNYKVDLMSFSAHK-IY-GPKGIGALYIRRNPRTRI 218 (2602)
Q Consensus 150 G~~~~----l~~I~~la~~~g~~livD~a~a-~g~~~--~--dl~~~~~D~~~~S~~K-~~-Gp~G~G~l~~~~~~~~~l 218 (2602)
|.+.| +++|.++|++||+++|+|+++. +|-.. + ......+|++++ .| +. |..-+|.+++++++.+.+
T Consensus 202 G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~a~~~~gv~PDi~~~--gK~l~gG~~p~~av~~~~~i~~~~ 279 (404)
T d2byla1 202 GVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPDIVLL--GKALSGGLYPVSAVLCDDDIMLTI 279 (404)
T ss_dssp TSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEE--CGGGGTTSSCCEEEEECHHHHTTS
T ss_pred CCccCCHHHHHHHHHHHHhcCeEEEeeccccccccccccchhhhcCCCCCEEEE--CchhhCCCccceeeeechhhhhcc
Confidence 87776 8999999999999999999985 33211 1 122234798854 59 43 322379999998887777
Q ss_pred cceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCc-eEEeCCCCCCCCceEEEE
Q psy15216 219 EAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEE-IYINGDMNNRIPHNLNIS 297 (2602)
Q Consensus 219 ~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g-~~l~~~~~~~~~~~~~~~ 297 (2602)
.+...++ ..+.+..++++..++|+.+.+ ++..++..++.+++.+.|.+.... +.-+. . ...+..+.
T Consensus 280 ~~~~~~~-------T~~gnpl~~aaa~a~L~~i~~--~~l~~~~~~~g~~l~~~l~~l~~~~i~~vR---g-~Gl~~~i~ 346 (404)
T d2byla1 280 KPGEHFS-------TYGGNPLGCRVAIAALEVLEE--ENLAENADKLGIILRNELMKLPSDVVTAVR---G-KGLLNAIV 346 (404)
T ss_dssp CTTSSCC-------SSTTCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHTSCTTTEEEEE---E-ETTEEEEE
T ss_pred CCCCCCc-------CCCcCHHHHHHHHHHHHHHHh--cCchhhhhHhhHHHHHHHHhhccccceeee---e-cccEEEEE
Confidence 6543221 234566777777788886554 345566677777788877662111 11000 0 01123344
Q ss_pred Ecc---cChhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 298 FNF---IEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 298 ~~~---~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
+.. .....+..++ +|+.+.+.. .+.||+++....|++|+|+++++|++.
T Consensus 347 ~~~~~~~~~~~~~~~l~~~Gvl~~~~~-----------------------~~~i~l~PpL~it~~~id~~~~~l~~a 400 (404)
T d2byla1 347 IKETKDWDAWKVCLRLRDNGLLAKPTH-----------------------GDIIRFAPPLVIKEDELRESIEIINKT 400 (404)
T ss_dssp ECCCSSCCHHHHHHHHHHTTEECEEEE-----------------------TTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred EecCCchhHHHHHHHHHhCCeEEecCC-----------------------CCEEEEECCcCCCHHHHHHHHHHHHHH
Confidence 432 2334566665 788875321 267999988778999999999999974
|
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.90 E-value=5.6e-08 Score=122.13 Aligned_cols=309 Identities=16% Similarity=0.180 Sum_probs=189.6
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhh-----
Q psy15216 1404 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFY----- 1478 (2602)
Q Consensus 1404 ~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~----- 1478 (2602)
-.++++.+++.+.++.....+.. .+. ....++.+.++++.+. +.+.+++++++|+..+++......
T Consensus 57 h~~p~i~~Av~~q~~~~~~~~~~-~~~------~~~~~~~~~~~~~~~~--~~v~~~~sGseA~e~Aik~ar~~~~~~~~ 127 (404)
T d2byla1 57 HCHPKIVNALKSQVDKLTLTSRA-FYN------NVLGEYEEYITKLFNY--HKVLPMNTGVEAGETACKLARKWGYTVKG 127 (404)
T ss_dssp BTCHHHHHHHHHHHTTCCCCCTT-EEE------SSHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHhhCCCcccc-ccc------chHHHHHHhhhhcccc--cccccccCccccchhHHHHHHHHhhhccc
Confidence 35788999999988764322221 111 1234556677777764 589999999999999998765211
Q ss_pred -ccCCCEEEEcCCCCcch-HHHHHHH----HhCCc-----EEEEeccCCCCCcChhHHHhhccC-CceEEEEeccccccc
Q psy15216 1479 -KKRGKHIITVQTEHKSV-LDSIRKL----ENDGF-----RVTYLKPKNNGLITLSQLEEKICS-DTILVSVMLVNNEIG 1546 (2602)
Q Consensus 1479 -~~~gd~Vlv~~~~~~s~-~~~~~~~----~~~G~-----~v~~v~~~~~~~id~d~l~~~i~~-~t~lv~l~~~~n~tG 1546 (2602)
......++.....|+.. ....... ...+. .+..+|. -|++++++++.+ +..+|++..+....|
T Consensus 128 ~~~~~~~i~~~~~~~hg~t~~~~~~~~~~~~~~~~~p~~~~~~~~p~-----~d~~~l~~~l~~~~iAaviiEPi~g~~G 202 (404)
T d2byla1 128 IQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPY-----NDLPALERALQDPNVAAFMVEPIQGEAG 202 (404)
T ss_dssp CCTTCCEEEEETTCCCCCSHHHHTTCCCHHHHTTSCSCCTTEEEECT-----TCHHHHHHHHTSTTEEEEEECSSBTTTT
T ss_pred cccccccccccCCCccccccceeccCCCcccccCCCCCCCCeeEecc-----cCHHHHHHhcCCCCeEEEEECCccCCCC
Confidence 01234666666665543 2222110 00111 1222322 378899999864 567788877777788
Q ss_pred cccC----hHHHHHHhhhcCCEEEEecccc-cCcc----cccCCCCCccEEEEcccc-cc-CCCceEEEEEecCCCCccc
Q psy15216 1547 VIQP----ILEIGELCRSKGVIFHCDAAQA-VGKI----DINIQNYKVDLMSFSAHK-IY-GPKGIGALYIRRNPRTRIE 1615 (2602)
Q Consensus 1547 ~~~~----l~~I~~ia~~~gi~vivD~a~~-~g~~----~~~l~~~~~D~~v~S~~K-~~-gp~G~G~l~~~~~~~~~l~ 1615 (2602)
...| +++|.++|++||+++|+|+++. +|-. ........+|+++++ | +. |..-+|.+++++++.+.+.
T Consensus 203 ~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~a~~~~gv~PDi~~~g--K~l~gG~~p~~av~~~~~i~~~~~ 280 (404)
T d2byla1 203 VVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPDIVLLG--KALSGGLYPVSAVLCDDDIMLTIK 280 (404)
T ss_dssp SBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEEC--GGGGTTSSCCEEEEECHHHHTTSC
T ss_pred CccCCHHHHHHHHHHHHhcCeEEEeeccccccccccccchhhhcCCCCCEEEEC--chhhCCCccceeeeechhhhhccC
Confidence 7776 9999999999999999999985 3221 112223347988654 9 43 3223799999987766665
Q ss_pred cccccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc-EE-EeCCCCCCCCceEEEE
Q psy15216 1616 AQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMESIEE-IY-INGDMNNRIPHNLNIS 1693 (2602)
Q Consensus 1616 ~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~g-l~-i~~~~~~~~~~~~~~~ 1693 (2602)
+...++ ..+.++.+.++..+.|+.+.+ ++..++..++.+++.+.|.+.... +. +.+ ...+..+.
T Consensus 281 ~~~~~~-------T~~gnpl~~aaa~a~L~~i~~--~~l~~~~~~~g~~l~~~l~~l~~~~i~~vRg-----~Gl~~~i~ 346 (404)
T d2byla1 281 PGEHFS-------TYGGNPLGCRVAIAALEVLEE--ENLAENADKLGIILRNELMKLPSDVVTAVRG-----KGLLNAIV 346 (404)
T ss_dssp TTSSCC-------SSTTCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHTSCTTTEEEEEE-----ETTEEEEE
T ss_pred CCCCCc-------CCCcCHHHHHHHHHHHHHHHh--cCchhhhhHhhHHHHHHHHhhccccceeeee-----cccEEEEE
Confidence 533211 123455666666677876554 345556666777788877762111 11 110 11233344
Q ss_pred Eec---CCcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1694 FNF---IEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1694 ~~~---~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
+.. .....+...+ +|+.+.+.. .+.||+++....|++|+|+++++|+++
T Consensus 347 ~~~~~~~~~~~~~~~l~~~Gvl~~~~~-----------------------~~~i~l~PpL~it~~~id~~~~~l~~a 400 (404)
T d2byla1 347 IKETKDWDAWKVCLRLRDNGLLAKPTH-----------------------GDIIRFAPPLVIKEDELRESIEIINKT 400 (404)
T ss_dssp ECCCSSCCHHHHHHHHHHTTEECEEEE-----------------------TTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred EecCCchhHHHHHHHHHhCCeEEecCC-----------------------CCEEEEECCcCCCHHHHHHHHHHHHHH
Confidence 432 1233455555 788875321 167999988888999999999999974
|
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=98.86 E-value=3.3e-07 Score=115.20 Aligned_cols=316 Identities=15% Similarity=0.133 Sum_probs=180.2
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhccccc-----
Q psy15216 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFY----- 82 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~----- 82 (2602)
-..|.+.+++.+.+......... .. ....+.+.+.++.+.+. +.+.|..++++|+..++.......
T Consensus 55 h~~p~v~~Ai~~q~~~~~~~~~~---~~----~~~~~~~~~~~~~~~~~--~~v~~~~sgs~a~~~a~k~ar~~~~~~~~ 125 (404)
T d1z7da1 55 HCHPNILNAMINQAKNLTICSRA---FF----SVPLGICERYLTNLLGY--DKVLMMNTGAEANETAYKLCRKWGYEVKK 125 (404)
T ss_dssp BTCHHHHHHHHHHHTTCSCCCTT---SE----EHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHHHHHHHHHTSC
T ss_pred cCcHHHHHHHHHHHHhCCCcccc---cc----hHHHHHHHHhhhhcccc--ceeeeeccccchHHHHHHHHHHHHhhccc
Confidence 35789999999988753211111 11 12345566777777775 479999999999999887654211
Q ss_pred -ccCCCEEEEcCCCCcccHHHHHHH-HhCCcEEEEeccCCC----CccChHHHHhhccC-CceEEEEecccCccccccc-
Q psy15216 83 -KKRGKHIITVQTEHKSVLDSIRKL-ENDGFRVTYLKPKNN----GLITLSQLEEKICS-DTILVSVMLVNNEIGVIQP- 154 (2602)
Q Consensus 83 -~~~gd~Vlv~~~~~~s~~~~~~~~-~~~G~~v~~v~~~~~----~~ld~e~l~~~i~~-~tklv~i~~~~npTG~~~~- 154 (2602)
......++.....|+......... .....+....+..+. ..-+.+.++..+.+ ++.+|++.......|.+.|
T Consensus 126 ~~~~~~~~~~~~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iAavi~EPi~g~~G~~~~~ 205 (404)
T d1z7da1 126 IPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYDDLEALEEELKDPNVCAFIVEPIQGEAGVIVPS 205 (404)
T ss_dssp CCTTCCEEEEETTC--------------------------CEEEECTTCHHHHHHHHTSTTEEEEEECSSBSTTTSBCCC
T ss_pred ccccccccccccccCCCCcccccccccccccccCCCCCCccccccccchHHHHHHHhcCCCEEEEEEEEEcCCCCCccCC
Confidence 012235666666666543333222 111111111111111 11256777777754 5678888888888888877
Q ss_pred ---HHHHHHHHHhcCCEEEEecccc-cccc--c--ccCCCCCccEEEecccc-cc-CCCCcEEEEEecCCCCcccceecC
Q psy15216 155 ---ILEIGELCRSKGVIFHCDAAQA-VGKI--D--INIQNYKVDLMSFSAHK-IY-GPKGIGALYIRRNPRTRIEAQIHG 224 (2602)
Q Consensus 155 ---l~~I~~la~~~g~~livD~a~a-~g~~--~--~dl~~~~~D~~~~S~~K-~~-Gp~G~G~l~~~~~~~~~l~~~~~g 224 (2602)
+++|.++|++||+++|+|+++. +|-. . .......+|++++ .| +. |..-+|.+++++++.+.+.+...+
T Consensus 206 ~~fl~~l~~lc~~~g~llI~DEV~tGfgRtG~~~~~e~~gv~PDivt~--gK~l~gG~~p~~~v~~~~~i~~~~~~~~~~ 283 (404)
T d1z7da1 206 DNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYNVKPDVILL--GKALSGGHYPISAVLANDDIMLVIKPGEHG 283 (404)
T ss_dssp TTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEE--CGGGGTTSSCCEEEEECHHHHTTCCTTCCC
T ss_pred HHHHHHHHHHHHHcCCEEEEEcCccCCCcccccccccccCCCCCEEEE--cccccCCCCCcccccchHHHHccCCCCCcC
Confidence 8999999999999999999985 3311 1 1122345898865 59 33 322379999998887777654322
Q ss_pred CCccccccccCcchhHHHHHHHHHHHHHH-h-HHHHHHHHHHHHHHHHHHHhhccCceEEeCCCCCCCCceEEEEEccc-
Q psy15216 225 GGHEYGLRSGTLATHQIVGMGEAFRLARI-E-MKEELKRILFLQKRLYNGLMESIEEIYINGDMNNRIPHNLNISFNFI- 301 (2602)
Q Consensus 225 ~~~~~~~~~gt~~~~~~~al~~al~~~~~-~-~~~~~~~~~~l~~~l~~~L~~~~~g~~l~~~~~~~~~~~~~~~~~~~- 301 (2602)
. ..+.++.++++..+.|++... . .++..+....+.+.+.+.+++ .+.+.-+.. ...+..+.|...
T Consensus 284 ~-------T~~gnpl~~aaa~a~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~v~~vrg----~Gl~~~i~~~~~~ 351 (404)
T d1z7da1 284 S-------TYGGNPLAASICVEALNVLINEKLCENAEKLGGPFLENLKRELKD-SKIVRDVRG----KGLLCAIEFKNEL 351 (404)
T ss_dssp C-------TTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTT-CTTEEEEEE----ETTEEEEEECTTT
T ss_pred c-------CCCCCcchhhhhhhhhhhhhcchhhhhhccchhHHHHHHHHHHhc-CCCeEEEEe----eCcEEEEEEcCCc
Confidence 1 223466677777777875432 2 233333334444444444443 333321110 122344555432
Q ss_pred -ChhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 302 -EGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 302 -~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
...++...+ +|+.+.+.. .+.||+++....|++++++++++|++.
T Consensus 352 ~~~~~~~~~l~~~Gl~~~~~~-----------------------~~~ir~~Ppl~it~~~id~~~~~l~~a 399 (404)
T d1z7da1 352 VNVLDICLKLKENGLITRDVH-----------------------DKTIRLTPPLCITKEQLDECTEIIVKT 399 (404)
T ss_dssp CCHHHHHHHHHHTTEECCEET-----------------------TTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHhCCeEEecCC-----------------------CCEEEEECCcCCCHHHHHHHHHHHHHH
Confidence 233455555 688775321 267999987778999999999999974
|
| >d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Escherichia coli [TaxId: 562]
Probab=98.84 E-value=1.6e-07 Score=119.20 Aligned_cols=318 Identities=15% Similarity=0.153 Sum_probs=183.8
Q ss_pred CCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCC-CCcEEEeCCHHHHHHHHHHhcccccccC
Q psy15216 7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYAD-PREIIWTSGATESNNLAIKGAAHFYKKR 85 (2602)
Q Consensus 7 ~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~-~~~Iv~t~g~T~al~~~~~~l~~~~~~~ 85 (2602)
+-.+|.+.+++.+.+...... .. .. ...+...++-+.+.+++.-+ .+.++|++|+++|+..+++.... ...
T Consensus 55 Gh~~p~i~~ai~~q~~~~~~~-~~--~~---~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~Alk~ar~--~t~ 126 (425)
T d1sffa_ 55 GHLHPKVVAAVEAQLKKLSHT-CF--QV---LAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARA--ATK 126 (425)
T ss_dssp CBTCHHHHHHHHHHTTTCSCC-CT--TT---EECHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHH--HHT
T ss_pred cCCcHHHHHHHHHHHhhcCCc-cc--cc---ccCcHHHHHHHHHHhhhhhcccceeeeeccccchhhhHHHHhhh--hhc
Confidence 346789999999988753211 11 11 11223455667777777533 35799999999999999988763 234
Q ss_pred CCEEEEcCCCCcccHHHHHHH-HhC-----C-----cEEEEeccC--CCCcc------ChHHHHhhc--cCCceEEEEec
Q psy15216 86 GKHIITVQTEHKSVLDSIRKL-END-----G-----FRVTYLKPK--NNGLI------TLSQLEEKI--CSDTILVSVML 144 (2602)
Q Consensus 86 gd~Vlv~~~~~~s~~~~~~~~-~~~-----G-----~~v~~v~~~--~~~~l------d~e~l~~~i--~~~tklv~i~~ 144 (2602)
...|+.....|+........+ ... + ......+.+ ..... +.+.+.... ..++.+|++..
T Consensus 127 r~~ii~~~~~yHG~t~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vaavi~EP 206 (425)
T d1sffa_ 127 RSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEP 206 (425)
T ss_dssp CCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGEEEEEECS
T ss_pred ccceEeecCCCcCccccchhhcCCCCcccCCcccccCCccccCCccccccccchhhHHHHHHHHHhcccccceEEEEecC
Confidence 567777777777755444433 100 0 111111111 11100 111111111 23456888877
Q ss_pred ccCccccccc----HHHHHHHHHhcCCEEEEeccccc-cccc----ccCCCCCccEEEecccc-cc-CCCCcEEEEEecC
Q psy15216 145 VNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQAV-GKID----INIQNYKVDLMSFSAHK-IY-GPKGIGALYIRRN 213 (2602)
Q Consensus 145 ~~npTG~~~~----l~~I~~la~~~g~~livD~a~a~-g~~~----~dl~~~~~D~~~~S~~K-~~-Gp~G~G~l~~~~~ 213 (2602)
.....|.+.| ++.|.++|++||+++|+|+++.. |-.. .......+|+++++ | +. |.| +|.++++++
T Consensus 207 i~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gR~g~~~a~~~~gv~PDi~~~g--K~l~gG~P-~~av~~~~~ 283 (425)
T d1sffa_ 207 VQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAPDLTTFA--KSIAGGFP-LAGVTGRAE 283 (425)
T ss_dssp BCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTSCCSEEEEC--GGGGTSSC-CEEEEEEHH
T ss_pred ccCCCCcccCCHHHHHHHHHHHHHcCceEEeccccccCCCcchhhHHHhcCCCccceecc--cccCCCcc-eEEEEEcHH
Confidence 7777787665 78899999999999999999863 3211 12223458988854 9 33 444 899999998
Q ss_pred CCCcccceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhh---ccCceEEeCCCCCCC
Q psy15216 214 PRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLME---SIEEIYINGDMNNRI 290 (2602)
Q Consensus 214 ~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~---~~~g~~l~~~~~~~~ 290 (2602)
+.+.+.+...+. ..+.+..++++..++|+++.+ ++..++...+.+++.+.+.+ ..+.+.-+.. .
T Consensus 284 i~~~~~~~~~~~-------T~~gnpl~~aaa~a~L~~i~~--~~~~~~~~~~g~~l~~~l~~~~~~~~~v~~vrg----~ 350 (425)
T d1sffa_ 284 VMDAVAPGGLGG-------TYAGNPIACVAALEVLKVFEQ--ENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRG----L 350 (425)
T ss_dssp HHTTSCTTSBCC-------SSSSCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEE----E
T ss_pred HHHhhCCCCCCC-------CCCcCHHHHHHHHHHHHHHHH--hhhhhhhhhhhhhhhhhhhhhHhhCCceEEEEc----c
Confidence 777765443221 234556777777788886553 23344444444444444432 1333221110 1
Q ss_pred CceEEEEEccc------C---hhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHH
Q psy15216 291 PHNLNISFNFI------E---GESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEI 359 (2602)
Q Consensus 291 ~~~~~~~~~~~------~---~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edi 359 (2602)
.....+.|... + ...+...+ +|+.+.+... ..+.||+++....|++||
T Consensus 351 Gl~~~i~f~~~~~~~~~~~~~~~~~~~~l~~~Gvl~~~~g~---------------------~~n~i~~~PpL~it~~ei 409 (425)
T d1sffa_ 351 GAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGP---------------------YYNVLRILVPLTIEDAQI 409 (425)
T ss_dssp TTEEEEEEBGGGCTTSBCHHHHHHHHHHHHHTTEECEEEST---------------------TSCEEEECCCTTCCHHHH
T ss_pred ccEEEEEEeccCccCCccHHHHHHHHHHHHHCCCEEeccCC---------------------CCCEEEEECCCCCCHHHH
Confidence 22334444211 1 12344444 7887764321 126799999888899999
Q ss_pred HHHHHHHHhh
Q psy15216 360 DFTIKLLKMK 369 (2602)
Q Consensus 360 d~li~~L~~~ 369 (2602)
+.++++|++.
T Consensus 410 d~~l~~l~~a 419 (425)
T d1sffa_ 410 RQGLEIISQC 419 (425)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999874
|
| >d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Escherichia coli [TaxId: 562]
Probab=98.82 E-value=4.1e-07 Score=115.23 Aligned_cols=315 Identities=16% Similarity=0.163 Sum_probs=181.1
Q ss_pred CCCHHHHHHHHHHHhhccC-CCCCccchhHHHHHHHHHHHHHHHHHHhCCC-CCcEEEeCCHHHHHHHHHHhhhhhhccC
Q psy15216 1404 PIDPRVVDKMIPYLRVQFG-NPASRNHIYGWTAEKAIEKARNEVAQLIYAD-PREIIWTSGATESNNLAIKGAAHFYKKR 1481 (2602)
Q Consensus 1404 ~~~~~v~eal~~~l~~~~~-np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~-~~~iv~t~gaT~al~~al~~l~~~~~~~ 1481 (2602)
-.++.+.+++.+.++.... .+.. .. .+...++-+.+.+++.-+ .+.+.|++++|+|+..+++.... ...
T Consensus 56 h~~p~i~~ai~~q~~~~~~~~~~~---~~----~~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~Alk~ar~--~t~ 126 (425)
T d1sffa_ 56 HLHPKVVAAVEAQLKKLSHTCFQV---LA----YEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARA--ATK 126 (425)
T ss_dssp BTCHHHHHHHHHHTTTCSCCCTTT---EE----CHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHH--HHT
T ss_pred CCcHHHHHHHHHHHhhcCCccccc---cc----CcHHHHHHHHHHhhhhhcccceeeeeccccchhhhHHHHhhh--hhc
Confidence 3578999999998876321 1111 11 123455667777777432 34689999999999999988763 234
Q ss_pred CCEEEEcCCCCcchHHHHHHHHh-C-----C-----cEEEEeccC--CCCCc------ChhHHHhhc--cCCceEEEEec
Q psy15216 1482 GKHIITVQTEHKSVLDSIRKLEN-D-----G-----FRVTYLKPK--NNGLI------TLSQLEEKI--CSDTILVSVML 1540 (2602)
Q Consensus 1482 gd~Vlv~~~~~~s~~~~~~~~~~-~-----G-----~~v~~v~~~--~~~~i------d~d~l~~~i--~~~t~lv~l~~ 1540 (2602)
...|+.....|+........+.. . + ......+.. ..... +.+++.... ..++.+|++..
T Consensus 127 r~~ii~~~~~yHG~t~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vaavi~EP 206 (425)
T d1sffa_ 127 RSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEP 206 (425)
T ss_dssp CCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGEEEEEECS
T ss_pred ccceEeecCCCcCccccchhhcCCCCcccCCcccccCCccccCCccccccccchhhHHHHHHHHHhcccccceEEEEecC
Confidence 56778877777775443333311 0 0 011111111 01100 011111111 23456888887
Q ss_pred cccccccccC----hHHHHHHhhhcCCEEEEeccccc-Ccc----cccCCCCCccEEEEcccc-cc-CCCceEEEEEecC
Q psy15216 1541 VNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQAV-GKI----DINIQNYKVDLMSFSAHK-IY-GPKGIGALYIRRN 1609 (2602)
Q Consensus 1541 ~~n~tG~~~~----l~~I~~ia~~~gi~vivD~a~~~-g~~----~~~l~~~~~D~~v~S~~K-~~-gp~G~G~l~~~~~ 1609 (2602)
+....|...| ++.|.++|++||+++|+|+++.. |-. ........+|+++++ | +. |.+ +|.++++++
T Consensus 207 i~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gR~g~~~a~~~~gv~PDi~~~g--K~l~gG~P-~~av~~~~~ 283 (425)
T d1sffa_ 207 VQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAPDLTTFA--KSIAGGFP-LAGVTGRAE 283 (425)
T ss_dssp BCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTSCCSEEEEC--GGGGTSSC-CEEEEEEHH
T ss_pred ccCCCCcccCCHHHHHHHHHHHHHcCceEEeccccccCCCcchhhHHHhcCCCccceecc--cccCCCcc-eEEEEEcHH
Confidence 8777787665 88999999999999999999863 321 112223458988865 9 43 443 899999988
Q ss_pred CCCccccccccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cCCcEE-EeCCCCCC
Q psy15216 1610 PRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLME---SIEEIY-INGDMNNR 1685 (2602)
Q Consensus 1610 ~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~---~~~gl~-i~~~~~~~ 1685 (2602)
+.+.+.+...++ ..+.++.+++|..++|+.+.+ ++..++...+.+++.+.+.+ ..+.+. +.+
T Consensus 284 i~~~~~~~~~~~-------T~~gnpl~~aaa~a~L~~i~~--~~~~~~~~~~g~~l~~~l~~~~~~~~~v~~vrg----- 349 (425)
T d1sffa_ 284 VMDAVAPGGLGG-------TYAGNPIACVAALEVLKVFEQ--ENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRG----- 349 (425)
T ss_dssp HHTTSCTTSBCC-------SSSSCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEE-----
T ss_pred HHHhhCCCCCCC-------CCCcCHHHHHHHHHHHHHHHH--hhhhhhhhhhhhhhhhhhhhhHhhCCceEEEEc-----
Confidence 766665432211 123445566666677876543 23334444444444444432 133322 111
Q ss_pred CCceEEEEEecC-----Cc----HHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHH
Q psy15216 1686 IPHNLNISFNFI-----EG----ESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKE 1754 (2602)
Q Consensus 1686 ~~~~~~~~~~~~-----~~----~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~ed 1754 (2602)
...+..+.|... .. ..+...+ +|+.+.+.... .+.||++++...|++|
T Consensus 350 ~Gl~~~i~f~~~~~~~~~~~~~~~~~~~~l~~~Gvl~~~~g~~---------------------~n~i~~~PpL~it~~e 408 (425)
T d1sffa_ 350 LGAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPY---------------------YNVLRILVPLTIEDAQ 408 (425)
T ss_dssp ETTEEEEEEBGGGCTTSBCHHHHHHHHHHHHHTTEECEEESTT---------------------SCEEEECCCTTCCHHH
T ss_pred cccEEEEEEeccCccCCccHHHHHHHHHHHHHCCCEEeccCCC---------------------CCEEEEECCCCCCHHH
Confidence 123444444321 11 2333344 78887643211 2679999988899999
Q ss_pred HHHHHHHHHHh
Q psy15216 1755 IDFTIKLLKMK 1765 (2602)
Q Consensus 1755 id~li~~L~~~ 1765 (2602)
|++++++|++.
T Consensus 409 id~~l~~l~~a 419 (425)
T d1sffa_ 409 IRQGLEIISQC 419 (425)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999875
|
| >d2fsja1 c.55.1.12 (A:165-325) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Ta0583-like domain: Hypothetical protein Ta0583 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.78 E-value=1.9e-09 Score=117.79 Aligned_cols=153 Identities=21% Similarity=0.170 Sum_probs=102.9
Q ss_pred ccceEEEEEeCCceEEEEEEEEECCEEEEEEEecCCCCcchHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHcc
Q psy15216 816 FEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLS 895 (2602)
Q Consensus 816 ~~~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~l~~~~e~~K~~LS 895 (2602)
+++++||+|+||||||++++...+..+. .........|+.+++..+.+++..++..... .. ..+.+. .
T Consensus 4 ~~g~~lviDIG~gTtDi~v~~~~~~~~~-~~~~~~~~~g~~~i~~~i~~~i~~~~~~~~~-~~-------~~~~~~---~ 71 (161)
T d2fsja1 4 QPGYGVVIDVGSRTTDVLTINLMDMEPV-VELSFSLQIGVGDAISALSRKIAKETGFVVP-FD-------LAQEAL---S 71 (161)
T ss_dssp CSSEEEEEEECSSCEEEEEEETTTTEEC-GGGCEEESCCHHHHHHHHHHHHHHHHCCCCC-HH-------HHHHHT---T
T ss_pred CCCcEEEEEcCcCeEEEEEEECCCeEEE-EEEeccHhHHHHHHHHHHHHHHHHHHHhhhh-HH-------HHHHHH---h
Confidence 5678999999999999999886554442 2223335789999999999999888754321 11 111111 1
Q ss_pred cccceEEEEEecCCceEEEEeCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccceEEEecCccchHHHHHHHHhhccC
Q psy15216 896 YQSSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKT 975 (2602)
Q Consensus 896 ~~~~~~~~i~~~~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~a~~~~~~i~~V~LvGG~sr~P~v~~~l~~~f~~ 975 (2602)
. . ... .+... . -++.+.+.++++++.+...+.+.+.. ....++.|+|+||+|.+ +++.+++.|+.
T Consensus 72 -~-~--~~~---~g~~~--~-~~~~i~~~~~~~~~~i~~~i~~~~~~---~~~~i~~iil~GGga~l--l~~~l~~~~~~ 136 (161)
T d2fsja1 72 -H-P--VMF---RQKQV--G-GPEVSGPILEDLANRIIENIRLNLRG---EVDRVTSLIPVGGGSNL--IGDRFEEIAPG 136 (161)
T ss_dssp -S-C--EEE---TTEEE--C-SHHHHHHHHHHHHHHHHHHHHHHHGG---GGGGEEEEEEESTTHHH--HGGGGGGGSTT
T ss_pred -c-c--ccc---ccccc--h-HHHHHHHHHHHHHHHHHHHHHHHHhh---ccccccEEEEECCHHHH--HHHHHHHHccC
Confidence 1 1 111 12111 1 24566677777777777777666543 23578999999999997 78889999975
Q ss_pred cc--cCcCCcchHhHHHHHHHh
Q psy15216 976 TL--LTSIDPDKAVVFGAAIQA 995 (2602)
Q Consensus 976 ~~--~~~~~p~~aVa~GAa~~a 995 (2602)
.. ..+.||+.|+|+|--..|
T Consensus 137 ~~~~~~~~~p~~ana~G~~~~~ 158 (161)
T d2fsja1 137 TLVKIKPEDLQFANALGYRDAA 158 (161)
T ss_dssp CBCCCCTTTTTTHHHHHHHHHH
T ss_pred CeeecCCCCccchHHHHHHHHH
Confidence 43 345799999999976655
|
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=98.78 E-value=1.1e-06 Score=110.28 Aligned_cols=313 Identities=15% Similarity=0.145 Sum_probs=177.8
Q ss_pred CCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhh------
Q psy15216 1405 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFY------ 1478 (2602)
Q Consensus 1405 ~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~------ 1478 (2602)
-.+++.+++.+.++........ .+. .....+.+.++++.+. +.+.|+.++++|+..++.......
T Consensus 56 ~~p~v~~Ai~~q~~~~~~~~~~-~~~------~~~~~~~~~~~~~~~~--~~v~~~~sgs~a~~~a~k~ar~~~~~~~~~ 126 (404)
T d1z7da1 56 CHPNILNAMINQAKNLTICSRA-FFS------VPLGICERYLTNLLGY--DKVLMMNTGAEANETAYKLCRKWGYEVKKI 126 (404)
T ss_dssp TCHHHHHHHHHHHTTCSCCCTT-SEE------HHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHHHHHHHHHTSCC
T ss_pred CcHHHHHHHHHHHHhCCCcccc-cch------HHHHHHHHhhhhcccc--ceeeeeccccchHHHHHHHHHHHHhhcccc
Confidence 4789999999988764222111 111 1234566667777774 478999999999999887654211
Q ss_pred ccCCCEEEEcCCCCcchHHHHHHHH-hCCcEEEEeccCCC----CCcChhHHHhhccC-CceEEEEeccccccccccC--
Q psy15216 1479 KKRGKHIITVQTEHKSVLDSIRKLE-NDGFRVTYLKPKNN----GLITLSQLEEKICS-DTILVSVMLVNNEIGVIQP-- 1550 (2602)
Q Consensus 1479 ~~~gd~Vlv~~~~~~s~~~~~~~~~-~~G~~v~~v~~~~~----~~id~d~l~~~i~~-~t~lv~l~~~~n~tG~~~~-- 1550 (2602)
......++.....|+.......... ....+..+.+..+. ..-+.+.++..+.+ ++.+|++..+....|.+.|
T Consensus 127 ~~~~~~~~~~~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iAavi~EPi~g~~G~~~~~~ 206 (404)
T d1z7da1 127 PENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYDDLEALEEELKDPNVCAFIVEPIQGEAGVIVPSD 206 (404)
T ss_dssp CTTCCEEEEETTC--------------------------CEEEECTTCHHHHHHHHTSTTEEEEEECSSBSTTTSBCCCT
T ss_pred cccccccccccccCCCCcccccccccccccccCCCCCCccccccccchHHHHHHHhcCCCEEEEEEEEEcCCCCCccCCH
Confidence 1122356666666655433222221 11111111111111 11256777777764 5678888888888888877
Q ss_pred --hHHHHHHhhhcCCEEEEecccc-cCcc----cccCCCCCccEEEEcccc-cc-C-CCceEEEEEecCCCCcccccccc
Q psy15216 1551 --ILEIGELCRSKGVIFHCDAAQA-VGKI----DINIQNYKVDLMSFSAHK-IY-G-PKGIGALYIRRNPRTRIEAQIHG 1620 (2602)
Q Consensus 1551 --l~~I~~ia~~~gi~vivD~a~~-~g~~----~~~l~~~~~D~~v~S~~K-~~-g-p~G~G~l~~~~~~~~~l~~~~~g 1620 (2602)
+++|.++|++||+++|+|+++. +|-. ........+|+++++ | +. | ++ +|.+++++++.+.+.+...+
T Consensus 207 ~fl~~l~~lc~~~g~llI~DEV~tGfgRtG~~~~~e~~gv~PDivt~g--K~l~gG~~p-~~~v~~~~~i~~~~~~~~~~ 283 (404)
T d1z7da1 207 NYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYNVKPDVILLG--KALSGGHYP-ISAVLANDDIMLVIKPGEHG 283 (404)
T ss_dssp THHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEEC--GGGGTTSSC-CEEEEECHHHHTTCCTTCCC
T ss_pred HHHHHHHHHHHHcCCEEEEEcCccCCCcccccccccccCCCCCEEEEc--ccccCCCCC-cccccchHHHHccCCCCCcC
Confidence 8999999999999999999985 3211 112223458988655 9 43 3 34 79999998877666543321
Q ss_pred CCccccCCCCCcchhHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHhhcCCcEE-EeCCCCCCCCceEEEEEecC
Q psy15216 1621 GGHEYGLRSGTLATHQIVGMGEAFRLARI-E-MKEELKRILFLQKRLYNGLMESIEEIY-INGDMNNRIPHNLNISFNFI 1697 (2602)
Q Consensus 1621 ~~~~~~~~~gt~~~~~~~al~~aL~~~~~-~-~~~~~~~~~~l~~~l~~~L~~~~~gl~-i~~~~~~~~~~~~~~~~~~~ 1697 (2602)
+ ..+.++.++++..+.|+.+.. . .+...+....+.+.+.+.+.+ .+.+. +.+ ...+..+.|...
T Consensus 284 ~-------T~~gnpl~~aaa~a~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~v~~vrg-----~Gl~~~i~~~~~ 350 (404)
T d1z7da1 284 S-------TYGGNPLAASICVEALNVLINEKLCENAEKLGGPFLENLKRELKD-SKIVRDVRG-----KGLLCAIEFKNE 350 (404)
T ss_dssp C-------TTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTT-CTTEEEEEE-----ETTEEEEEECTT
T ss_pred c-------CCCCCcchhhhhhhhhhhhhcchhhhhhccchhHHHHHHHHHHhc-CCCeEEEEe-----eCcEEEEEEcCC
Confidence 1 112355566666677775433 2 233333334444445444444 33332 111 123444555432
Q ss_pred --CcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1698 --EGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1698 --~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
....+...+ +|+.+.+.. .+.||++++...|++++++++++|+++
T Consensus 351 ~~~~~~~~~~l~~~Gl~~~~~~-----------------------~~~ir~~Ppl~it~~~id~~~~~l~~a 399 (404)
T d1z7da1 351 LVNVLDICLKLKENGLITRDVH-----------------------DKTIRLTPPLCITKEQLDECTEIIVKT 399 (404)
T ss_dssp TCCHHHHHHHHHHTTEECCEET-----------------------TTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHhCCeEEecCC-----------------------CCEEEEECCcCCCHHHHHHHHHHHHHH
Confidence 223455544 788875321 167999988878999999999999974
|
| >d2fsja1 c.55.1.12 (A:165-325) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Ta0583-like domain: Hypothetical protein Ta0583 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.76 E-value=3.4e-09 Score=115.80 Aligned_cols=154 Identities=21% Similarity=0.184 Sum_probs=101.9
Q ss_pred CCCceEEEEEeCCceEEEEEEEEeCCEEEEEEEecCCCCchhHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHh
Q psy15216 2211 IFEGIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELL 2290 (2602)
Q Consensus 2211 ~~~~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~l~~~~e~~K~~l 2290 (2602)
++++++||+|+||||||++++...+..+ +.........|+.+++..|.+++..++ ....... ..+. +
T Consensus 3 ~~~g~~lviDIG~gTtDi~v~~~~~~~~-~~~~~~~~~~g~~~i~~~i~~~i~~~~-~~~~~~~-------~~~~----~ 69 (161)
T d2fsja1 3 QQPGYGVVIDVGSRTTDVLTINLMDMEP-VVELSFSLQIGVGDAISALSRKIAKET-GFVVPFD-------LAQE----A 69 (161)
T ss_dssp CCSSEEEEEEECSSCEEEEEEETTTTEE-CGGGCEEESCCHHHHHHHHHHHHHHHH-CCCCCHH-------HHHH----H
T ss_pred cCCCcEEEEEcCcCeEEEEEEECCCeEE-EEEEeccHhHHHHHHHHHHHHHHHHHH-HhhhhHH-------HHHH----H
Confidence 3567899999999999999988665443 222233468899999999999988763 2222211 1111 1
Q ss_pred cccceEEEEEEecCCceEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccceEEEEeCccchHHHHHHHHhhcC
Q psy15216 2291 SYQSSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFK 2370 (2602)
Q Consensus 2291 s~~~~~~~~i~~~~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~ 2370 (2602)
.... .. . .+. ... .++.+.+.++++++.+.+.+.+.+.. ...+++.|+|+||+|.+ +++.+++.|+
T Consensus 70 ~~~~-~~----~-~g~--~~~-~~~~i~~~~~~~~~~i~~~i~~~~~~---~~~~i~~iil~GGga~l--l~~~l~~~~~ 135 (161)
T d2fsja1 70 LSHP-VM----F-RQK--QVG-GPEVSGPILEDLANRIIENIRLNLRG---EVDRVTSLIPVGGGSNL--IGDRFEEIAP 135 (161)
T ss_dssp TTSC-EE----E-TTE--EEC-SHHHHHHHHHHHHHHHHHHHHHHHGG---GGGGEEEEEEESTTHHH--HGGGGGGGST
T ss_pred Hhcc-cc----c-ccc--cch-HHHHHHHHHHHHHHHHHHHHHHHHhh---ccccccEEEEECCHHHH--HHHHHHHHcc
Confidence 1111 11 1 111 111 24556667777777777766666543 23578999999999987 7889999997
Q ss_pred Ccc--cCCCCccchhhhHHHHHh
Q psy15216 2371 TTL--LTSIDPDKAVVFGAAIQA 2391 (2602)
Q Consensus 2371 ~~~--~~~~~p~~aVa~GAa~~a 2391 (2602)
... ..+.||+.|.|+|--..|
T Consensus 136 ~~~~~~~~~~p~~ana~G~~~~~ 158 (161)
T d2fsja1 136 GTLVKIKPEDLQFANALGYRDAA 158 (161)
T ss_dssp TCBCCCCTTTTTTHHHHHHHHHH
T ss_pred CCeeecCCCCccchHHHHHHHHH
Confidence 643 356899999999987665
|
| >d2fug33 d.15.4.2 (3:1-95) Nadh-quinone oxidoreductase chain 3, Nqo3, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: 2Fe-2S ferredoxin-like family: 2Fe-2S ferredoxin domains from multidomain proteins domain: Nadh-quinone oxidoreductase chain 3, Nqo3, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=98.75 E-value=1.6e-09 Score=106.07 Aligned_cols=72 Identities=19% Similarity=0.210 Sum_probs=48.4
Q ss_pred ccccccCCCchHHHHHhhcCccccccccc-----ccccCCceEEEcCCCCcCCCCCHHHHHHhcccCCCCCCCccCCC
Q psy15216 2530 GAIFNENSGISLCDALLKNSIFIEHACEK-----SCACATCHVIIREGFNEINKANEVEEDMLNKAWGLEENSRLSCQ 2602 (2602)
Q Consensus 2530 ~~~ve~~~g~~~~~~~~~~~~~~~~~c~g-----~~~c~tch~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~srl~cq 2602 (2602)
+++++++.|.++|++++++|++|.+.|+| ..+|+||||.|.+++..+.+....|.+.++... ..++.|||||
T Consensus 8 g~~~~v~~g~tll~a~~~~gi~ip~~C~~~~~~~~G~C~~C~V~v~~g~~~~~~~~~~~~~~~~~~~-~~~~~rlaCq 84 (95)
T d2fug33 8 DRIVEVPPGTSVMDAVFHAGYDVPLFCSEKHLSPIGACRMCLVRIGLPKKGPDGKPLLNEKGEPEIQ-WQPKLAASCV 84 (95)
T ss_dssp SCEEEECTTCBHHHHHHHHTCCCCCCSCCTTSCCCSCSTTSEEEEEC------------------CC-BCSSCEETTT
T ss_pred CEEEEECCCCcHHHHHHhcCCCCCccccCCCcCcccccCCCEEEEccCccccCcccchhhhhhhHhh-cCCCccCcCc
Confidence 47889999999999999999999999964 689999999999998777777788888887654 3578999998
|
| >d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Glutamate-1-semialdehyde aminomutase (aminotransferase) species: Synechococcus sp., strain GR6 [TaxId: 1131]
Probab=98.75 E-value=2.6e-07 Score=117.09 Aligned_cols=242 Identities=14% Similarity=0.093 Sum_probs=148.3
Q ss_pred CCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCC
Q psy15216 7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRG 86 (2602)
Q Consensus 7 ~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~g 86 (2602)
+-..|.+.+++.+.+........ .. .....+.+.+.+.... .+.+.|++++++|+..+++.... ....
T Consensus 67 Gh~hp~i~~ai~~~~~~~~~~~~------~~---~~~~~la~~~~~~~~~-~~~v~f~~sGseA~e~Alk~ar~--~t~r 134 (427)
T d2gsaa_ 67 GHAHPEVIEALKVAMEKGTSFGA------PC---ALENVLAEMVNDAVPS-IEMVRFVNSGTEACMAVLRLMRA--YTGR 134 (427)
T ss_dssp CBTCHHHHHHHHHHHTTCSCCSS------CC---HHHHHHHHHHHHHSTT-CSEEEEESSHHHHHHHHHHHHHH--HHCC
T ss_pred cCCcHHHHHHHHHHHHhcCcccc------ch---hHHHHHHHHHHhhCCc-cccccccCCcHHHHHHHHHHHHH--hcCC
Confidence 34578999999998875321111 11 1234455666666543 36799999999999999987752 2345
Q ss_pred CEEEEcCCCCcccHHHHHH-----HHhCCc------------EEEEeccCCCCccChHHHHhhccC---CceEEEEeccc
Q psy15216 87 KHIITVQTEHKSVLDSIRK-----LENDGF------------RVTYLKPKNNGLITLSQLEEKICS---DTILVSVMLVN 146 (2602)
Q Consensus 87 d~Vlv~~~~~~s~~~~~~~-----~~~~G~------------~v~~v~~~~~~~ld~e~l~~~i~~---~tklv~i~~~~ 146 (2602)
..|+.....|+........ ....+. ....++ .-|++.+++.+.+ +..+|++....
T Consensus 135 ~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-----~~~~~~le~~~~~~~~~iaavi~Epi~ 209 (427)
T d2gsaa_ 135 DKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTP-----YNDLEAVKALFAENPGEIAGVILEPIV 209 (427)
T ss_dssp CEEEEETTCCCCSCGGGCSSCCHHHHHTTCCSCSSSCHHHHTTEEEEC-----TTCHHHHHHHHTTSTTTEEEEEECSSB
T ss_pred CeEEEEecccccCcceeeeecCCcccccCCCCCCCCcccCccceeccC-----cchHHHHHHHHHhCCCCeEEEEEcCCc
Confidence 6788877777753211100 001111 111111 3488999998874 56688888877
Q ss_pred Cccccccc----HHHHHHHHHhcCCEEEEeccccccccc----ccCCCCCccEEEecccc-c-cCCCCcEEEEEecCCCC
Q psy15216 147 NEIGVIQP----ILEIGELCRSKGVIFHCDAAQAVGKID----INIQNYKVDLMSFSAHK-I-YGPKGIGALYIRRNPRT 216 (2602)
Q Consensus 147 npTG~~~~----l~~I~~la~~~g~~livD~a~a~g~~~----~dl~~~~~D~~~~S~~K-~-~Gp~G~G~l~~~~~~~~ 216 (2602)
...|.+.| +++|.++|++||+++|+|+++...... .+.....+|+++++ | + .|.+ +|.+++++++.+
T Consensus 210 g~~G~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~r~g~~~~~~~~gi~PDi~~~g--K~lggG~p-~~a~~~~~~i~~ 286 (427)
T d2gsaa_ 210 GNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGFRIAYGGVQEKFGVTPDLTTLG--KIIGGGLP-VGAYGGKREIMQ 286 (427)
T ss_dssp CSSSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBTTTBTTCHHHHTTCCCSEEEEC--GGGGTTSC-CEEEEECHHHHT
T ss_pred CCCCCccCCHHHHHHHHHHHHHhceeeeeccccccceecccchHHhcCCCHHHHhhh--hccCCCcc-eeeeeehHHHHH
Confidence 77888888 999999999999999999999532110 01122358998876 6 3 3444 467778888777
Q ss_pred cccceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Q psy15216 217 RIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLM 274 (2602)
Q Consensus 217 ~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~ 274 (2602)
.+.+.... ......+.+..++++..++|+++.+ ++..++..++.+++.+.|.
T Consensus 287 ~~~~~~~~----~~~~T~~gnpla~AAala~Le~i~~--~~l~~~~~~~g~~l~~~L~ 338 (427)
T d2gsaa_ 287 LVAPAGPM----YQAGTLSGNPLAMTAGIKTLELLRQ--PGTYEYLDQITKRLSDGLL 338 (427)
T ss_dssp TBTTTSSB----CCCCTTTTCHHHHHHHHHHHHHHTS--TTHHHHHHHHHHHHHHHHH
T ss_pred HhcccCCC----cCCCCCCCCchhhHHHHHhhHHhhh--hhHHhhhhHHHHHHHHHHH
Confidence 76542100 0111234666777777788885543 2334444455555555543
|
| >d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA species: Escherichia coli [TaxId: 562]
Probab=98.71 E-value=2.3e-07 Score=117.17 Aligned_cols=322 Identities=8% Similarity=0.059 Sum_probs=187.6
Q ss_pred CCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccc---c
Q psy15216 8 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYK---K 84 (2602)
Q Consensus 8 ~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~---~ 84 (2602)
-.+|.+.+++.+.+.... +... .... .+...++.+++.+....+.+.+.|++++++|+..++........ .
T Consensus 59 h~~p~i~~Ai~~q~~~~~-~~~~--~~~~---~~~~~~l~~~l~~~~~~~~~~v~f~~sGseA~e~A~k~ar~~~~~~g~ 132 (429)
T d1s0aa_ 59 YNHPQLNAAMKSQIDAMS-HVMF--GGIT---HAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGE 132 (429)
T ss_dssp BSCHHHHHHHHHHHHHCS-CCCC--SSEE---CHHHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHHHhcC-Cccc--CCcc---chHHHHHHHHHHhhhccCcceeeeccccccchhhhhhhhhheeecccc
Confidence 468999999999887632 1111 0111 12234455667777766667899999999999999877652211 2
Q ss_pred CCCEEEEcCCCCcccHHHHHHH-HhC----------CcEEEEeccCC---CCc---cChHHHHhhcc---CCceEEEEec
Q psy15216 85 RGKHIITVQTEHKSVLDSIRKL-END----------GFRVTYLKPKN---NGL---ITLSQLEEKIC---SDTILVSVML 144 (2602)
Q Consensus 85 ~gd~Vlv~~~~~~s~~~~~~~~-~~~----------G~~v~~v~~~~---~~~---ld~e~l~~~i~---~~tklv~i~~ 144 (2602)
++..|+.....|+........+ ... .......+... ... -+++++++.+. +++.++++.-
T Consensus 133 ~~~~ii~~~~~yHG~t~~a~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iaavivEP 212 (429)
T d1s0aa_ 133 ARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEP 212 (429)
T ss_dssp CCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHTTTEEEEEECS
T ss_pred cccEEEEecCCccccchhhhhhcCCccccccccCccccccccccccccccccccchhhhhhhhhhhhhcCCccceeeecc
Confidence 3357777777766643322222 000 01112222211 112 23444444432 4566777765
Q ss_pred cc-Ccccccc-c---HHHHHHHHHhcCCEEEEecccc-ccccc----ccCCCCCccEEEecccc-c-cCCCCcEEEEEec
Q psy15216 145 VN-NEIGVIQ-P---ILEIGELCRSKGVIFHCDAAQA-VGKID----INIQNYKVDLMSFSAHK-I-YGPKGIGALYIRR 212 (2602)
Q Consensus 145 ~~-npTG~~~-~---l~~I~~la~~~g~~livD~a~a-~g~~~----~dl~~~~~D~~~~S~~K-~-~Gp~G~G~l~~~~ 212 (2602)
.. +.-|... | +++|.++|++||+++|+|+++. +|-.. .......+|+++.+ | + .|..-+|.+++++
T Consensus 213 i~~~~gg~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~~~~~~~~~v~PDi~~~g--K~l~gG~~p~~av~~~~ 290 (429)
T d1s0aa_ 213 IVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPDILCLG--KALTGGTMTLSATLTTR 290 (429)
T ss_dssp SEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEEC--GGGGTSSSCCEEEEECH
T ss_pred eeccCCCccCCCHHHHHHHHHHHHHcCcceehhhccccccccccccccccceecccccccc--cccccccccccchhhHH
Confidence 54 4445544 3 8899999999999999999986 33221 11223457998875 8 4 3433378899888
Q ss_pred CCCCcccceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhc--cCceE-EeCCCCCC
Q psy15216 213 NPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMES--IEEIY-INGDMNNR 289 (2602)
Q Consensus 213 ~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~--~~g~~-l~~~~~~~ 289 (2602)
++.+.+.+...+.. ......+.+..+.++..+.|+.... ++..++..++.+++.++|.+. .+.+. +-+
T Consensus 291 ~i~~~~~~~~~~~~--~~~~T~~gnp~~~aaa~a~L~~i~~--~~~~~~~~~~g~~l~~~L~~l~~~~~v~~vrg----- 361 (429)
T d1s0aa_ 291 EVAETISNGEAGCF--MHGPTFMGNPLACAAANASLAILES--GDWQQQVADIEVQLREQLAPARDAEMVADVRV----- 361 (429)
T ss_dssp HHHHHHHTSTTSSC--SCCCTTTTCHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHGGGGGCTTEEEEEE-----
T ss_pred HHHhccCCCCCcce--eecCCCCCCcccchhhhcccccccc--ccccchhhHHHHHHHHHHHHhccCCceEEEee-----
Confidence 76655432111000 0011234566677777788886543 456777777888888888651 11211 100
Q ss_pred CCceEEEEEcc-cChhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHH
Q psy15216 290 IPHNLNISFNF-IEGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLL 366 (2602)
Q Consensus 290 ~~~~~~~~~~~-~~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L 366 (2602)
...+..+.+.. .....+...+ +|+.+++. .+.||+++..-.|++|||+++++|
T Consensus 362 ~Gl~~~~e~~~~~~~~~~~~~~~~~Gl~~~~~------------------------g~~i~~~Ppl~it~~eid~~~~~l 417 (429)
T d1s0aa_ 362 LGAIGVVETTHPVNMAALQKFFVEQGVWIRPF------------------------GKLIYLMPPYIILPQQLQRLTAAV 417 (429)
T ss_dssp ETTEEEEEESSCBCHHHHHHHHHHTTEECCCB------------------------TTEEEECCCTTCCHHHHHHHHHHH
T ss_pred cccEEEEEecCcccHHHHHHHHHHCCcEEEec------------------------CCEEEEeCCcCCCHHHHHHHHHHH
Confidence 11233344443 2344555555 68776532 267999988888999999999999
Q ss_pred Hhhh
Q psy15216 367 KMKE 370 (2602)
Q Consensus 367 ~~~~ 370 (2602)
++..
T Consensus 418 ~~al 421 (429)
T d1s0aa_ 418 NRAV 421 (429)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 9753
|
| >d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Dialkylglycine decarboxylase species: Pseudomonas cepacia [TaxId: 292]
Probab=98.68 E-value=6.7e-07 Score=113.55 Aligned_cols=321 Identities=14% Similarity=0.106 Sum_probs=176.2
Q ss_pred CCCCHHHHHHHHHHHhhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhcccccccCC
Q psy15216 7 TPIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRG 86 (2602)
Q Consensus 7 ~~~p~~v~~a~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~~~~g 86 (2602)
+-.+|.+.+++.+.+..... ... ... .+...++-+++.+...-..+.+.|++|+|+|+..+++.... ....
T Consensus 56 Gh~~p~v~~ai~~q~~~~~~-~~~--~~~----~~~~~~la~~L~~~~~~~~~~v~f~~sGseA~e~Alk~Ar~--~t~r 126 (431)
T d1zoda1 56 GHCHPEIVSVIGEYAGKLDH-LFS--EML----SRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKL--VTGK 126 (431)
T ss_dssp CBTCHHHHHHHHHHHHHCCC-CCT--TCC----CHHHHHHHHHHHHHSCTTCCEEEEESCHHHHHHHHHHHHHH--HHTC
T ss_pred cCCCHHHHHHHHHHHhhccc-ccc--ccc----cHHHHHHHHHHHHhCCcccceeeecccccchHHHHHHHHHH--hcCC
Confidence 34578999999999876321 111 011 12234566667777644456899999999999999998762 2355
Q ss_pred CEEEEcCCCCcccHHHHHHHHhC---------CcEEEEeccCCCC---------ccC---hHHHHhhc----cCCceEEE
Q psy15216 87 KHIITVQTEHKSVLDSIRKLEND---------GFRVTYLKPKNNG---------LIT---LSQLEEKI----CSDTILVS 141 (2602)
Q Consensus 87 d~Vlv~~~~~~s~~~~~~~~~~~---------G~~v~~v~~~~~~---------~ld---~e~l~~~i----~~~tklv~ 141 (2602)
+.|+.....|++.......+... ......++..... ..+ ++.+...+ ..+..+|+
T Consensus 127 ~~i~~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi 206 (431)
T d1zoda1 127 YEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFI 206 (431)
T ss_dssp CEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEE
T ss_pred cceeecccccccccchhhcccccccccccCCcccCceeeeeecccccccccccchhhhhhHHHHHHHHHHhcccccccee
Confidence 67877777777765444332100 0111222211110 011 22332222 34567888
Q ss_pred EecccCccccccc----HHHHHHHHHhcCCEEEEeccccc-ccccc----cCCCCCccEEEecccc-c-cCCCCcEEEEE
Q psy15216 142 VMLVNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQAV-GKIDI----NIQNYKVDLMSFSAHK-I-YGPKGIGALYI 210 (2602)
Q Consensus 142 i~~~~npTG~~~~----l~~I~~la~~~g~~livD~a~a~-g~~~~----dl~~~~~D~~~~S~~K-~-~Gp~G~G~l~~ 210 (2602)
+.......|.+.| +++|.++|++||+++|.|+++.. |-... ......+|+++++ | + .|.+ .+.+++
T Consensus 207 ~EPi~g~~G~~~~~~~yl~~lr~lc~~~gillI~DEV~tG~gRtG~~~~~~~~gv~PDi~~~g--K~l~gG~p-~~av~~ 283 (431)
T d1zoda1 207 AEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGVTPDILTLS--KTLGAGLP-LAAIVT 283 (431)
T ss_dssp ECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEEC--HHHHTTSS-CEEEEE
T ss_pred eccccccCCccCCCHHHHHHHHHHHHhcCceEEeccccccccccccccccccCCCCcchhccc--cccccccc-cceeee
Confidence 8888776777766 89999999999999999999873 42211 1122457998876 8 3 3444 455566
Q ss_pred ecCCCCcccceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhh---ccCceEEeCCCC
Q psy15216 211 RRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLME---SIEEIYINGDMN 287 (2602)
Q Consensus 211 ~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~---~~~g~~l~~~~~ 287 (2602)
+++.......... ......+.+..+.++..+++++..+ +...++..++.+++.+.+.+ ..+-+.-...
T Consensus 284 ~~~~~~~~~~~~~-----~~~~T~~g~pl~~aaa~a~l~~i~~--~~~~~~~~~~g~~l~~~l~~~~~~~~~i~~vrG-- 354 (431)
T d1zoda1 284 SAAIEERAHELGY-----LFYTTHVSDPLPAAVGLRVLDVVQR--DGLVARANVMGDRLRRGLLDLMERFDCIGDVRG-- 354 (431)
T ss_dssp CHHHHHHHHHTTC-----CCCCTTTTCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEE--
T ss_pred eecchhhhhcccc-----cccCCCCCCcchHHHHHHHHHHhhh--hhhhHHHHHHHHHHhhhhhhhhhcCCCeEEEee--
Confidence 5544333221110 0011234566666666677775443 23333444444444444322 1232211100
Q ss_pred CCCCceEEEEEcc--c-----C--hhHHHHHh--CCeEEcccccCCCCCCChHHHHHHcCCCccCCCCeEEEecCCCCCH
Q psy15216 288 NRIPHNLNISFNF--I-----E--GESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTE 356 (2602)
Q Consensus 288 ~~~~~~~~~~~~~--~-----~--~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRis~~~~~t~ 356 (2602)
...+..+.|.. . + ...+...+ +|+....-. . ++ ..+.||+++....|+
T Consensus 355 --~Glm~~ie~~~~~~~~~~~~~~~~~i~~~~~~~Gl~~~~~~-~-~~-----------------~~~~i~l~Ppl~it~ 413 (431)
T d1zoda1 355 --RGLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIVQ-L-PG-----------------MGGVFRIAPPLTVSE 413 (431)
T ss_dssp --ETTEEEEEEEEETTTTEECTTHHHHHHHHHHHTTEECCEEC-C-TT-----------------SCCEEEECCCTTCCH
T ss_pred --cceEEEEEEecCCcccCccHHHHHHHHHHHHHhCcccCeee-e-cC-----------------CCCEEEEECCCCCCH
Confidence 01122333311 1 0 12344444 565532111 1 10 137899999888899
Q ss_pred HHHHHHHHHHHhh
Q psy15216 357 KEIDFTIKLLKMK 369 (2602)
Q Consensus 357 edid~li~~L~~~ 369 (2602)
+|+|+++++|++.
T Consensus 414 ~eid~~~~~l~~a 426 (431)
T d1zoda1 414 DEIDLGLSLLGQA 426 (431)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999864
|
| >d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Glutamate-1-semialdehyde aminomutase (aminotransferase) species: Synechococcus sp., strain GR6 [TaxId: 1131]
Probab=98.66 E-value=5.6e-07 Score=113.88 Aligned_cols=240 Identities=13% Similarity=0.069 Sum_probs=144.1
Q ss_pred CCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCCE
Q psy15216 1405 IDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGKH 1484 (2602)
Q Consensus 1405 ~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd~ 1484 (2602)
-.+++.+++.+.++........ . .....+.+.+.+... ..+.+.|++++++|+..++..... .....+
T Consensus 69 ~hp~i~~ai~~~~~~~~~~~~~--~-------~~~~~la~~~~~~~~-~~~~v~f~~sGseA~e~Alk~ar~--~t~r~~ 136 (427)
T d2gsaa_ 69 AHPEVIEALKVAMEKGTSFGAP--C-------ALENVLAEMVNDAVP-SIEMVRFVNSGTEACMAVLRLMRA--YTGRDK 136 (427)
T ss_dssp TCHHHHHHHHHHHTTCSCCSSC--C-------HHHHHHHHHHHHHST-TCSEEEEESSHHHHHHHHHHHHHH--HHCCCE
T ss_pred CcHHHHHHHHHHHHhcCccccc--h-------hHHHHHHHHHHhhCC-ccccccccCCcHHHHHHHHHHHHH--hcCCCe
Confidence 4789999999988763211111 1 123345556666654 335789999999999999987752 235578
Q ss_pred EEEcCCCCcchHHHHHH-----HHhCCc------------EEEEeccCCCCCcChhHHHhhccC---CceEEEEeccccc
Q psy15216 1485 IITVQTEHKSVLDSIRK-----LENDGF------------RVTYLKPKNNGLITLSQLEEKICS---DTILVSVMLVNNE 1544 (2602)
Q Consensus 1485 Vlv~~~~~~s~~~~~~~-----~~~~G~------------~v~~v~~~~~~~id~d~l~~~i~~---~t~lv~l~~~~n~ 1544 (2602)
|+.....|++....... ....+. ....+ -.-|++.+++.+.+ +..+|++..+...
T Consensus 137 ii~~~~~yHG~t~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-----~~~~~~~le~~~~~~~~~iaavi~Epi~g~ 211 (427)
T d2gsaa_ 137 IIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTT-----PYNDLEAVKALFAENPGEIAGVILEPIVGN 211 (427)
T ss_dssp EEEETTCCCCSCGGGCSSCCHHHHHTTCCSCSSSCHHHHTTEEEE-----CTTCHHHHHHHHTTSTTTEEEEEECSSBCS
T ss_pred EEEEecccccCcceeeeecCCcccccCCCCCCCCcccCccceecc-----CcchHHHHHHHHHhCCCCeEEEEEcCCcCC
Confidence 88888777753211100 000111 01111 12488999999874 5668888888877
Q ss_pred cccccC----hHHHHHHhhhcCCEEEEecccccC-cc---cccCCCCCccEEEEcccc-cc-CCCceEEEEEecCCCCcc
Q psy15216 1545 IGVIQP----ILEIGELCRSKGVIFHCDAAQAVG-KI---DINIQNYKVDLMSFSAHK-IY-GPKGIGALYIRRNPRTRI 1614 (2602)
Q Consensus 1545 tG~~~~----l~~I~~ia~~~gi~vivD~a~~~g-~~---~~~l~~~~~D~~v~S~~K-~~-gp~G~G~l~~~~~~~~~l 1614 (2602)
.|...| +++|.++|++||+++|+|+++... .- ........+|+++++ | +. |.+ +|.+++++++.+.+
T Consensus 212 ~G~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~r~g~~~~~~~~gi~PDi~~~g--K~lggG~p-~~a~~~~~~i~~~~ 288 (427)
T d2gsaa_ 212 SGFIVPDAGFLEGLREITLEHDALLVFDEVMTGFRIAYGGVQEKFGVTPDLTTLG--KIIGGGLP-VGAYGGKREIMQLV 288 (427)
T ss_dssp SSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBTTTBTTCHHHHTTCCCSEEEEC--GGGGTTSC-CEEEEECHHHHTTB
T ss_pred CCCccCCHHHHHHHHHHHHHhceeeeeccccccceecccchHHhcCCCHHHHhhh--hccCCCcc-eeeeeehHHHHHHh
Confidence 888887 999999999999999999998531 10 011123458998877 7 33 444 46777888776665
Q ss_pred ccccccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15216 1615 EAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLM 1670 (2602)
Q Consensus 1615 ~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~ 1670 (2602)
.+.- ..... ...+.++..+++..++|+.+.+ ++..++..++.+++.+.|+
T Consensus 289 ~~~~---~~~~~-~T~~gnpla~AAala~Le~i~~--~~l~~~~~~~g~~l~~~L~ 338 (427)
T d2gsaa_ 289 APAG---PMYQA-GTLSGNPLAMTAGIKTLELLRQ--PGTYEYLDQITKRLSDGLL 338 (427)
T ss_dssp TTTS---SBCCC-CTTTTCHHHHHHHHHHHHHHTS--TTHHHHHHHHHHHHHHHHH
T ss_pred cccC---CCcCC-CCCCCCchhhHHHHHhhHHhhh--hhHHhhhhHHHHHHHHHHH
Confidence 4311 00011 1123455566666677775543 2233444444455554443
|
| >d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA species: Escherichia coli [TaxId: 562]
Probab=98.64 E-value=1e-06 Score=111.25 Aligned_cols=323 Identities=9% Similarity=0.044 Sum_probs=184.7
Q ss_pred CCCHHHHHHHHHHHhhccC-CCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhc---
Q psy15216 1404 PIDPRVVDKMIPYLRVQFG-NPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYK--- 1479 (2602)
Q Consensus 1404 ~~~~~v~eal~~~l~~~~~-np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~--- 1479 (2602)
--++++.+++.+.++.... .+.. ... +...++.+++.+....+.+.+.|++++++|+..++........
T Consensus 59 h~~p~i~~Ai~~q~~~~~~~~~~~---~~~----~~~~~l~~~l~~~~~~~~~~v~f~~sGseA~e~A~k~ar~~~~~~g 131 (429)
T d1s0aa_ 59 YNHPQLNAAMKSQIDAMSHVMFGG---ITH----APAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKG 131 (429)
T ss_dssp BSCHHHHHHHHHHHHHCSCCCCSS---EEC----HHHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHhcCCcccCC---ccc----hHHHHHHHHHHhhhccCcceeeeccccccchhhhhhhhhheeeccc
Confidence 3578999999998876321 1111 111 2234455667777665566899999999999999877652211
Q ss_pred cCCCEEEEcCCCCcchHHHHHHHHh-C----------CcEEEEeccCC---CCCc---ChhHHHhhc---cCCceEEEEe
Q psy15216 1480 KRGKHIITVQTEHKSVLDSIRKLEN-D----------GFRVTYLKPKN---NGLI---TLSQLEEKI---CSDTILVSVM 1539 (2602)
Q Consensus 1480 ~~gd~Vlv~~~~~~s~~~~~~~~~~-~----------G~~v~~v~~~~---~~~i---d~d~l~~~i---~~~t~lv~l~ 1539 (2602)
.++..|+.....|+........+.. . .......+... .... +++.+++.+ .+++.+|++.
T Consensus 132 ~~~~~ii~~~~~yHG~t~~a~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iaavivE 211 (429)
T d1s0aa_ 132 EARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIE 211 (429)
T ss_dssp CCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHTTTEEEEEEC
T ss_pred ccccEEEEecCCccccchhhhhhcCCccccccccCccccccccccccccccccccchhhhhhhhhhhhhcCCccceeeec
Confidence 2345788888776664322222110 0 01111222111 1112 344444443 3456677777
Q ss_pred ccc-ccccccc-C---hHHHHHHhhhcCCEEEEecccc-cCcc----cccCCCCCccEEEEcccc-c-cCCCceEEEEEe
Q psy15216 1540 LVN-NEIGVIQ-P---ILEIGELCRSKGVIFHCDAAQA-VGKI----DINIQNYKVDLMSFSAHK-I-YGPKGIGALYIR 1607 (2602)
Q Consensus 1540 ~~~-n~tG~~~-~---l~~I~~ia~~~gi~vivD~a~~-~g~~----~~~l~~~~~D~~v~S~~K-~-~gp~G~G~l~~~ 1607 (2602)
.+. +.-|... | +++|.++|++||+++|+|+++. +|-. ........+|+++++ | + .|..-+|.++++
T Consensus 212 Pi~~~~gg~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~~~~~~~~~v~PDi~~~g--K~l~gG~~p~~av~~~ 289 (429)
T d1s0aa_ 212 PIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPDILCLG--KALTGGTMTLSATLTT 289 (429)
T ss_dssp SSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEEC--GGGGTSSSCCEEEEEC
T ss_pred ceeccCCCccCCCHHHHHHHHHHHHHcCcceehhhccccccccccccccccceecccccccc--cccccccccccchhhH
Confidence 554 4444543 3 8999999999999999999986 3221 112223458998876 8 4 343337889988
Q ss_pred cCCCCccccccccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCcEE-EeCCCCC
Q psy15216 1608 RNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKRILFLQKRLYNGLMES--IEEIY-INGDMNN 1684 (2602)
Q Consensus 1608 ~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~~~~l~~~l~~~L~~~--~~gl~-i~~~~~~ 1684 (2602)
+++.+.+.+...+.. .. ....+.+...+++..+.|+.+.. ++..++..++-+++.++|.+. .+.+. +.+
T Consensus 290 ~~i~~~~~~~~~~~~-~~-~~T~~gnp~~~aaa~a~L~~i~~--~~~~~~~~~~g~~l~~~L~~l~~~~~v~~vrg---- 361 (429)
T d1s0aa_ 290 REVAETISNGEAGCF-MH-GPTFMGNPLACAAANASLAILES--GDWQQQVADIEVQLREQLAPARDAEMVADVRV---- 361 (429)
T ss_dssp HHHHHHHHTSTTSSC-SC-CCTTTTCHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHGGGGGCTTEEEEEE----
T ss_pred HHHHhccCCCCCcce-ee-cCCCCCCcccchhhhcccccccc--ccccchhhHHHHHHHHHHHHhccCCceEEEee----
Confidence 865544322110000 00 01123445566666677775543 355667777777888888652 12221 110
Q ss_pred CCCceEEEEEecC-CcHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHHHHHHHHHH
Q psy15216 1685 RIPHNLNISFNFI-EGESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEKEIDFTIKL 1761 (2602)
Q Consensus 1685 ~~~~~~~~~~~~~-~~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~edid~li~~ 1761 (2602)
...+..+.+... ....+...+ +|+.+++. .+.||+++..-.|.+|||+++++
T Consensus 362 -~Gl~~~~e~~~~~~~~~~~~~~~~~Gl~~~~~------------------------g~~i~~~Ppl~it~~eid~~~~~ 416 (429)
T d1s0aa_ 362 -LGAIGVVETTHPVNMAALQKFFVEQGVWIRPF------------------------GKLIYLMPPYIILPQQLQRLTAA 416 (429)
T ss_dssp -ETTEEEEEESSCBCHHHHHHHHHHTTEECCCB------------------------TTEEEECCCTTCCHHHHHHHHHH
T ss_pred -cccEEEEEecCcccHHHHHHHHHHCCcEEEec------------------------CCEEEEeCCcCCCHHHHHHHHHH
Confidence 112333444432 234454444 78876532 16799998888899999999999
Q ss_pred HHHhhhh
Q psy15216 1762 LKMKEFF 1768 (2602)
Q Consensus 1762 L~~~~~~ 1768 (2602)
|++...+
T Consensus 417 l~~al~e 423 (429)
T d1s0aa_ 417 VNRAVQD 423 (429)
T ss_dssp HHHHTSS
T ss_pred HHHHHHh
Confidence 9986433
|
| >d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Dialkylglycine decarboxylase species: Pseudomonas cepacia [TaxId: 292]
Probab=98.57 E-value=3.8e-06 Score=106.47 Aligned_cols=320 Identities=13% Similarity=0.094 Sum_probs=172.4
Q ss_pred CCCHHHHHHHHHHHhhccCCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhhccCCC
Q psy15216 1404 PIDPRVVDKMIPYLRVQFGNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFYKKRGK 1483 (2602)
Q Consensus 1404 ~~~~~v~eal~~~l~~~~~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~~~~gd 1483 (2602)
--++++.+++.+.++.... ...+. .. ....++-++|++...-..+.+.|++++|+|+..+++.... ....+
T Consensus 57 h~~p~v~~ai~~q~~~~~~-~~~~~--~~----~~~~~la~~L~~~~~~~~~~v~f~~sGseA~e~Alk~Ar~--~t~r~ 127 (431)
T d1zoda1 57 HCHPEIVSVIGEYAGKLDH-LFSEM--LS----RPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKL--VTGKY 127 (431)
T ss_dssp BTCHHHHHHHHHHHHHCCC-CCTTC--CC----HHHHHHHHHHHHHSCTTCCEEEEESCHHHHHHHHHHHHHH--HHTCC
T ss_pred CCCHHHHHHHHHHHhhccc-ccccc--cc----HHHHHHHHHHHHhCCcccceeeecccccchHHHHHHHHHH--hcCCc
Confidence 3468999999999876421 11111 11 1234566677777643456899999999999999997752 24557
Q ss_pred EEEEcCCCCcchHHHHHHHHhC---------CcEEEEeccCCCC---------CcC---hhHHHhhc----cCCceEEEE
Q psy15216 1484 HIITVQTEHKSVLDSIRKLEND---------GFRVTYLKPKNNG---------LIT---LSQLEEKI----CSDTILVSV 1538 (2602)
Q Consensus 1484 ~Vlv~~~~~~s~~~~~~~~~~~---------G~~v~~v~~~~~~---------~id---~d~l~~~i----~~~t~lv~l 1538 (2602)
.|+.....|++.......+... ......++..... ..+ ++.+...+ ..+..+|++
T Consensus 128 ~i~~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~ 207 (431)
T d1zoda1 128 EIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIA 207 (431)
T ss_dssp EEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEEE
T ss_pred ceeecccccccccchhhcccccccccccCCcccCceeeeeecccccccccccchhhhhhHHHHHHHHHHhccccccceee
Confidence 7888777777754333222110 0111222211110 011 22222222 345678888
Q ss_pred eccccccccccC----hHHHHHHhhhcCCEEEEeccccc-Cccc----ccCCCCCccEEEEcccc-c-cCCCceEEEEEe
Q psy15216 1539 MLVNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQAV-GKID----INIQNYKVDLMSFSAHK-I-YGPKGIGALYIR 1607 (2602)
Q Consensus 1539 ~~~~n~tG~~~~----l~~I~~ia~~~gi~vivD~a~~~-g~~~----~~l~~~~~D~~v~S~~K-~-~gp~G~G~l~~~ 1607 (2602)
..+....|...| +++|.++|++||+++|.|+++.. |-.- .......+|+++++ | + .|.+ ++.++++
T Consensus 208 EPi~g~~G~~~~~~~yl~~lr~lc~~~gillI~DEV~tG~gRtG~~~~~~~~gv~PDi~~~g--K~l~gG~p-~~av~~~ 284 (431)
T d1zoda1 208 EPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGVTPDILTLS--KTLGAGLP-LAAIVTS 284 (431)
T ss_dssp CSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEEC--HHHHTTSS-CEEEEEC
T ss_pred ccccccCCccCCCHHHHHHHHHHHHhcCceEEeccccccccccccccccccCCCCcchhccc--cccccccc-cceeeee
Confidence 888776777766 99999999999999999999862 3221 11123458998876 8 4 3444 4555665
Q ss_pred cCCCCccccccccCCccccCCCCCcchhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhcCCcEE-EeCCCCC
Q psy15216 1608 RNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIE--MKEELKRILFLQKRLYNGLMESIEEIY-INGDMNN 1684 (2602)
Q Consensus 1608 ~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~--~~~~~~~~~~l~~~l~~~L~~~~~gl~-i~~~~~~ 1684 (2602)
++.......... . . ....+.++.+.++..+.++.+... +++..+.-..+.+.+.+.+.+ .+-+. +.+
T Consensus 285 ~~~~~~~~~~~~---~-~-~~T~~g~pl~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~l~~~~~~-~~~i~~vrG---- 354 (431)
T d1zoda1 285 AAIEERAHELGY---L-F-YTTHVSDPLPAAVGLRVLDVVQRDGLVARANVMGDRLRRGLLDLMER-FDCIGDVRG---- 354 (431)
T ss_dssp HHHHHHHHHTTC---C-C-CCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH-CTTEEEEEE----
T ss_pred ecchhhhhcccc---c-c-cCCCCCCcchHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhhhhhc-CCCeEEEee----
Confidence 543332211100 0 0 111234455555555667744432 233333333333333333333 23221 111
Q ss_pred CCCceEEEEEec--C-----C--cHHHHHhc--CCEEEccccccCCCCCChhHHHHHcCCCccccCCeEEEecCCCCCHH
Q psy15216 1685 RIPHNLNISFNF--I-----E--GESLLMAI--KDIAVSSGSACTSASLEPSYVLRALGCNDELAHSSIRFTIGRFTTEK 1753 (2602)
Q Consensus 1685 ~~~~~~~~~~~~--~-----~--~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~e 1753 (2602)
...+..+.|.. . + ...+...+ +|+....-.... ..+.||+++....|++
T Consensus 355 -~Glm~~ie~~~~~~~~~~~~~~~~~i~~~~~~~Gl~~~~~~~~~-------------------~~~~i~l~Ppl~it~~ 414 (431)
T d1zoda1 355 -RGLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIVQLPG-------------------MGGVFRIAPPLTVSED 414 (431)
T ss_dssp -ETTEEEEEEEEETTTTEECTTHHHHHHHHHHHTTEECCEECCTT-------------------SCCEEEECCCTTCCHH
T ss_pred -cceEEEEEEecCCcccCccHHHHHHHHHHHHHhCcccCeeeecC-------------------CCCEEEEECCCCCCHH
Confidence 11233333321 0 0 12333333 566532111100 1268999999889999
Q ss_pred HHHHHHHHHHHh
Q psy15216 1754 EIDFTIKLLKMK 1765 (2602)
Q Consensus 1754 did~li~~L~~~ 1765 (2602)
|||+++++|.+.
T Consensus 415 eid~~~~~l~~a 426 (431)
T d1zoda1 415 EIDLGLSLLGQA 426 (431)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999874
|
| >d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.48 E-value=2.8e-06 Score=108.15 Aligned_cols=316 Identities=16% Similarity=0.131 Sum_probs=173.3
Q ss_pred CCCCHHHHHHHHHHHhhhc--CCCCCCCcchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhccccc--
Q psy15216 7 TPIDPRVVDKMIPYLRVQF--GNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFY-- 82 (2602)
Q Consensus 7 ~~~p~~v~~a~~~~l~~~~--~~p~~~~~~~~~~~~~~~~~~r~~lA~~~g~~~~~Iv~t~g~T~al~~~~~~l~~~~-- 82 (2602)
+-.+|.+.+++.+.+.... ..+...... .....+++.+.+.+......+.++|++|+++|+..+++......
T Consensus 68 Gh~~p~v~~ai~~q~~~~~~~~~~~~~~~~----~~~~a~~lae~l~~~~~~~~~~v~f~~sGseAve~Aik~Ar~~~~~ 143 (461)
T d1ohwa_ 68 GYSHPALVKLVQQPQNVSTFINRPALGILP----PENFVEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRS 143 (461)
T ss_dssp CBTCHHHHHHHHCGGGHHHHHCCCCTTTSC----BTTHHHHHHHTGGGGCCTTCCEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHhhhhhcccccccccc----hHHHHHHHHHHHHhhhccCcceeeeecchhhhhHHHHHHHHHHhhh
Confidence 3457789999887664321 112110011 11133445555555555455689999999999999988764210
Q ss_pred ----------------------ccCCCEEEEcCCCCcccHHHHHHHH------hCC---cEEEEeccCC-CC--------
Q psy15216 83 ----------------------KKRGKHIITVQTEHKSVLDSIRKLE------NDG---FRVTYLKPKN-NG-------- 122 (2602)
Q Consensus 83 ----------------------~~~gd~Vlv~~~~~~s~~~~~~~~~------~~G---~~v~~v~~~~-~~-------- 122 (2602)
..+...|+.....|+........+- ... ......+... ..
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~~~~syHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (461)
T d1ohwa_ 144 KERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKE 223 (461)
T ss_dssp HHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHTCCSCHHHHTTCCCCCCCEECCCCCCSSGGGCHHH
T ss_pred cccCcccccchhhhhhhhccccCCCCceEEEecCCcCCCCcccccccCCcccccccccccCCcccccccccccccccccc
Confidence 1234478877777776433332220 000 0111111110 00
Q ss_pred -----ccChHHHHhhc------cCCceEEEEecccCccccccc----HHHHHHHHHhcCCEEEEecccc-cccc--cccC
Q psy15216 123 -----LITLSQLEEKI------CSDTILVSVMLVNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKI--DINI 184 (2602)
Q Consensus 123 -----~ld~e~l~~~i------~~~tklv~i~~~~npTG~~~~----l~~I~~la~~~g~~livD~a~a-~g~~--~~dl 184 (2602)
..+.+++++++ .+++.+|++.......|.+.| +++|.++|++||+++|+|+++. +|-. .+..
T Consensus 224 ~~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPi~g~~G~~~~~~~fl~~lr~lc~~~gillI~DEV~tG~gRtG~~~~~ 303 (461)
T d1ohwa_ 224 NQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAH 303 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTCSSTTSSSSGG
T ss_pred cchhhhhhHHHHHHHHHHHHhCCCccceeeeccccccccccCchhhHHHHHHHHHHhhCcceeccccccccccccccccc
Confidence 12244555554 245778888888887887665 8899999999999999999985 3321 1222
Q ss_pred CCC----CccEEEeccccccCCCCcEEEEEecCCCCcccceecCCCccccccccCcchhHHHHHHHHHHHHHHhHHHHHH
Q psy15216 185 QNY----KVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELK 260 (2602)
Q Consensus 185 ~~~----~~D~~~~S~~K~~Gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~ 260 (2602)
+.+ .+|+++++ |-++ .|++..... .....+... ......+..+.++..++|+++.+ ++..+
T Consensus 304 e~~gi~~~PDiv~~g--K~l~---~g~~~~~~~-~~~~~~~~~-------~~T~~g~p~~~aaa~a~l~~i~~--~~l~~ 368 (461)
T d1ohwa_ 304 EHWGLDDPADVMTFS--KKMM---TGGFFHKEE-FRPNAPYRI-------FNTWLGDPSKNLLLAEVINIIKR--EDLLS 368 (461)
T ss_dssp GGGCCSSCCSEEEEC--GGGS---SEEEEECGG-GSCSSTTSS-------CCSCSSCHHHHHHHHHHHHHHHH--TTHHH
T ss_pred cccccccCchhhhhh--hccc---ccccccccc-ccccccccc-------ccccccccccchhhcccchhhhh--hhHHH
Confidence 212 37888655 7332 244444332 222111111 11223445666666678886543 34555
Q ss_pred HHHHHHHHHHHHHhhc---cCc-e-EEeCCCCCCCCceEEEEEcccC-hhHHHHHh--CCeEEcccccCCCCCCChHHHH
Q psy15216 261 RILFLQKRLYNGLMES---IEE-I-YINGDMNNRIPHNLNISFNFIE-GESLLMAI--KDIAVSSGSACTSASLEPSYVL 332 (2602)
Q Consensus 261 ~~~~l~~~l~~~L~~~---~~g-~-~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~ 332 (2602)
+..++.+++.++|.+. .|. + .+-+ ...+..+.++..+ ..++...+ +|+.+.+..
T Consensus 369 ~~~~~g~~l~~~l~~l~~~~~~~i~~vrG-----~Gl~~~ie~~~~~~~~~i~~~~~~~Gll~~~~~------------- 430 (461)
T d1ohwa_ 369 NAAHAGKVLLTGLLDLQARYPQFISRVRG-----RGTFCSFDTPDESIRNKLISIARNKGVMLGGCG------------- 430 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTTCEEEEE-----ETTEEEEECSSHHHHHHHHHHHHHTTEECEEET-------------
T ss_pred HHHHHHHHHHHHHHHHHhhCCCceEEeee-----eeEEEEEEcCCHHHHHHHHHHHHHCCeEEeeCC-------------
Confidence 5566666666666541 222 1 1111 0112333333221 23455555 788875321
Q ss_pred HHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHhh
Q psy15216 333 RALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 369 (2602)
Q Consensus 333 ~~~g~~~~~~~~~iRis~~~~~t~edid~li~~L~~~ 369 (2602)
.+.||+.+....|++|++.++++|++.
T Consensus 431 ----------~~~ir~~PpL~it~~eid~~~~~l~~~ 457 (461)
T d1ohwa_ 431 ----------DKSIRFRPTLVFRDHHAHLFLNIFSDI 457 (461)
T ss_dssp ----------TTEEECCCCTTCCHHHHHHHHHHHHHH
T ss_pred ----------CCEEEEeCCcCCCHHHHHHHHHHHHHH
Confidence 267999988888999999999999975
|
| >d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.44 E-value=2.9e-06 Score=108.14 Aligned_cols=315 Identities=16% Similarity=0.121 Sum_probs=169.0
Q ss_pred CCCHHHHHHHHHHHhhcc--CCCCCccchhHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCHHHHHHHHHHhhhhhh---
Q psy15216 1404 PIDPRVVDKMIPYLRVQF--GNPASRNHIYGWTAEKAIEKARNEVAQLIYADPREIIWTSGATESNNLAIKGAAHFY--- 1478 (2602)
Q Consensus 1404 ~~~~~v~eal~~~l~~~~--~np~~~~~~~~~~~~~~~~~lr~~ia~~~g~~~~~iv~t~gaT~al~~al~~l~~~~--- 1478 (2602)
-..+++.+++.+.+.... ..+...... ...+.+++.+.+.+......+.++|++++++|+..++.......
T Consensus 69 h~~p~v~~ai~~q~~~~~~~~~~~~~~~~----~~~~a~~lae~l~~~~~~~~~~v~f~~sGseAve~Aik~Ar~~~~~~ 144 (461)
T d1ohwa_ 69 YSHPALVKLVQQPQNVSTFINRPALGILP----PENFVEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSK 144 (461)
T ss_dssp BTCHHHHHHHHCGGGHHHHHCCCCTTTSC----BTTHHHHHHHTGGGGCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhhhhhcccccccccc----hHHHHHHHHHHHHhhhccCcceeeeecchhhhhHHHHHHHHHHhhhc
Confidence 356788888887665421 111110000 01123445555555444455679999999999999988764210
Q ss_pred ---------------------ccCCCEEEEcCCCCcchHHHHHHHHh------C---CcEEEEeccCC-CC---------
Q psy15216 1479 ---------------------KKRGKHIITVQTEHKSVLDSIRKLEN------D---GFRVTYLKPKN-NG--------- 1518 (2602)
Q Consensus 1479 ---------------------~~~gd~Vlv~~~~~~s~~~~~~~~~~------~---G~~v~~v~~~~-~~--------- 1518 (2602)
-.++..|+....+|+........+.. . .......+... .+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~~~~syHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (461)
T d1ohwa_ 145 ERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKEN 224 (461)
T ss_dssp HHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHTCCSCHHHHTTCCCCCCCEECCCCCCSSGGGCHHHH
T ss_pred ccCcccccchhhhhhhhccccCCCCceEEEecCCcCCCCcccccccCCcccccccccccCCccccccccccccccccccc
Confidence 12345788888777764322222110 0 00111111110 00
Q ss_pred ----CcChhHHHhhc------cCCceEEEEeccccccccccC----hHHHHHHhhhcCCEEEEecccc-cCcc----ccc
Q psy15216 1519 ----LITLSQLEEKI------CSDTILVSVMLVNNEIGVIQP----ILEIGELCRSKGVIFHCDAAQA-VGKI----DIN 1579 (2602)
Q Consensus 1519 ----~id~d~l~~~i------~~~t~lv~l~~~~n~tG~~~~----l~~I~~ia~~~gi~vivD~a~~-~g~~----~~~ 1579 (2602)
..+.+++++.+ ..++.+|++..+....|...| +++|.++|++||+++|+|+++. +|-. ...
T Consensus 225 ~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPi~g~~G~~~~~~~fl~~lr~lc~~~gillI~DEV~tG~gRtG~~~~~e 304 (461)
T d1ohwa_ 225 QQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHE 304 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTCSSTTSSSSGGG
T ss_pred chhhhhhHHHHHHHHHHHHhCCCccceeeeccccccccccCchhhHHHHHHHHHHhhCcceecccccccccccccccccc
Confidence 01234555554 245678888888887787665 8999999999999999999985 3311 111
Q ss_pred CCCC--CccEEEEccccccCCCceEEEEEecCCCCccccccccCCccccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHH
Q psy15216 1580 IQNY--KVDLMSFSAHKIYGPKGIGALYIRRNPRTRIEAQIHGGGHEYGLRSGTLATHQIVGMGEAFRLARIEMKEELKR 1657 (2602)
Q Consensus 1580 l~~~--~~D~~v~S~~K~~gp~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~gt~~~~~~~al~~aL~~~~~~~~~~~~~ 1657 (2602)
.... .+|+++++ |-.+ | |+...... +....+...+ .....+....++..++|+.+.. ++..++
T Consensus 305 ~~gi~~~PDiv~~g--K~l~--~-g~~~~~~~-~~~~~~~~~~-------~T~~g~p~~~aaa~a~l~~i~~--~~l~~~ 369 (461)
T d1ohwa_ 305 HWGLDDPADVMTFS--KKMM--T-GGFFHKEE-FRPNAPYRIF-------NTWLGDPSKNLLLAEVINIIKR--EDLLSN 369 (461)
T ss_dssp GGCCSSCCSEEEEC--GGGS--S-EEEEECGG-GSCSSTTSSC-------CSCSSCHHHHHHHHHHHHHHHH--TTHHHH
T ss_pred ccccccCchhhhhh--hccc--c-cccccccc-cccccccccc-------cccccccccchhhcccchhhhh--hhHHHH
Confidence 1112 37888765 7332 2 44444432 2222211111 1122344555555577775543 234445
Q ss_pred HHHHHHHHHHHHhhc---CCc-E-EEeCCCCCCCCceEEEEEecCC-cHHHHHhc--CCEEEccccccCCCCCChhHHHH
Q psy15216 1658 ILFLQKRLYNGLMES---IEE-I-YINGDMNNRIPHNLNISFNFIE-GESLLMAI--KDIAVSSGSACTSASLEPSYVLR 1729 (2602)
Q Consensus 1658 ~~~l~~~l~~~L~~~---~~g-l-~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~L--~gI~v~~g~~~~~~~~~~~~~~~ 1729 (2602)
..++.+++.++|.+. .|. + .+.+ ...+..+.++... ..++...+ +|+.+.+..
T Consensus 370 ~~~~g~~l~~~l~~l~~~~~~~i~~vrG-----~Gl~~~ie~~~~~~~~~i~~~~~~~Gll~~~~~-------------- 430 (461)
T d1ohwa_ 370 AAHAGKVLLTGLLDLQARYPQFISRVRG-----RGTFCSFDTPDESIRNKLISIARNKGVMLGGCG-------------- 430 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCEEEEE-----ETTEEEEECSSHHHHHHHHHHHHHTTEECEEET--------------
T ss_pred HHHHHHHHHHHHHHHHhhCCCceEEeee-----eeEEEEEEcCCHHHHHHHHHHHHHCCeEEeeCC--------------
Confidence 555555555555441 221 1 1111 0122333333211 12444444 788875421
Q ss_pred HcCCCccccCCeEEEecCCCCCHHHHHHHHHHHHHh
Q psy15216 1730 ALGCNDELAHSSIRFTIGRFTTEKEIDFTIKLLKMK 1765 (2602)
Q Consensus 1730 ~~~~~~~~~~~~iRls~~~~~t~edid~li~~L~~~ 1765 (2602)
.+.|||.+....|++|++.++++|.+.
T Consensus 431 ---------~~~ir~~PpL~it~~eid~~~~~l~~~ 457 (461)
T d1ohwa_ 431 ---------DKSIRFRPTLVFRDHHAHLFLNIFSDI 457 (461)
T ss_dssp ---------TTEEECCCCTTCCHHHHHHHHHHHHHH
T ss_pred ---------CCEEEEeCCcCCCHHHHHHHHHHHHHH
Confidence 167999988888999999999999985
|
| >d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Long alpha-hairpin superfamily: Chaperone J-domain family: Chaperone J-domain domain: HSC20 (HSCB), N-terminal (J) domain species: Escherichia coli [TaxId: 562]
Probab=98.38 E-value=9e-08 Score=88.56 Aligned_cols=49 Identities=35% Similarity=0.583 Sum_probs=46.9
Q ss_pred ccccccccccccchhhhHHHHHHHHHHHHHHHhhcChhhHHHHHHHhcC
Q psy15216 1929 DLLYFNDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKLNG 1977 (2602)
Q Consensus 1929 s~~~l~~~~~~~~~~~~~~~~~~~~~~n~ay~~l~~p~~r~~y~l~~~g 1977 (2602)
+..||+|++...++.++..+.+.++.||+||.+|+||.+|+.|||+|+|
T Consensus 28 ~~~~HPDk~~~~~~~~~~~a~~~~~~i~~Ay~vL~dp~~R~~Yll~l~g 76 (76)
T d1fpoa1 28 QRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLHG 76 (76)
T ss_dssp HHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHTTT
T ss_pred HHHhCccccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHccC
Confidence 5679999999999999999999999999999999999999999999988
|
| >d1krha3 d.15.4.2 (A:2-105) Benzoate dioxygenase reductase, N-terminal domain {Acinetobacter sp. [TaxId: 472]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: 2Fe-2S ferredoxin-like family: 2Fe-2S ferredoxin domains from multidomain proteins domain: Benzoate dioxygenase reductase, N-terminal domain species: Acinetobacter sp. [TaxId: 472]
Probab=98.23 E-value=4.9e-08 Score=96.07 Aligned_cols=69 Identities=26% Similarity=0.454 Sum_probs=50.7
Q ss_pred cccccCCCchHHHHHhhcCcccccccccccccCCceEEEcCCCCcCCCCCHHHHHHhcccCCCCCCCccCCC
Q psy15216 2531 AIFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVEEDMLNKAWGLEENSRLSCQ 2602 (2602)
Q Consensus 2531 ~~ve~~~g~~~~~~~~~~~~~~~~~c~g~~~c~tch~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~srl~cq 2602 (2602)
+.++++.|.++|++++++|++|...|++ ..|+||+|.|.+|.-.+++....| ..|. ..+...+.||+||
T Consensus 15 ~~~~~~~getlL~aa~~~gi~i~~~C~~-G~CgtC~v~v~~G~~~~~~~~~~~-~~l~-~~e~~~g~~LaCq 83 (104)
T d1krha3 15 RFICIAQGETLSDAAYRQQINIPMDCRE-GECGTCRAFCESGNYDMPEDNYIE-DALT-PEEAQQGYVLACQ 83 (104)
T ss_dssp EEEEECTTCCHHHHHHHTTCCCSCSCSS-SSSCTTEEEEEECCEECCGGGSCT-TTCC-HHHHHHTEEETTT
T ss_pred EEEEeCCCCcHHHHHHHcCCCCccccCC-cccCCCEEEeeeCccccccccccc-ccCC-HHHHhcCcEEeee
Confidence 6789999999999999999999999977 799999999998864443321111 1111 1112346799998
|
| >d1fpoa2 a.23.1.1 (A:77-171) HSC20 (HSCB), C-terminal oligomerisation domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Open three-helical up-and-down bundle superfamily: HSC20 (HSCB), C-terminal oligomerisation domain family: HSC20 (HSCB), C-terminal oligomerisation domain domain: HSC20 (HSCB), C-terminal oligomerisation domain species: Escherichia coli [TaxId: 562]
Probab=98.23 E-value=3e-07 Score=88.54 Aligned_cols=42 Identities=26% Similarity=0.437 Sum_probs=36.3
Q ss_pred cccCCccccCCChHHHHHHhHhHHHHHHHhhcchHHHhHhhh
Q psy15216 582 IDLNTKLNLNFSHDFLEQQMKWRETLSIIKNKKDKVKFMALL 623 (2602)
Q Consensus 582 ~~~~~~~~~~~~~~~l~~~~e~~e~l~~~~~~~~~~~~~~~l 623 (2602)
+++..|++|.+||+|||+||||||+|+++..+.|.+++..+.
T Consensus 1 ~d~~~E~~T~~DpeFLMeqME~RE~lee~~~~~d~~~l~~l~ 42 (95)
T d1fpoa2 1 FDLASEQHTVRDTAFLMEQLELREELDEIEQAKDEARLESFI 42 (95)
T ss_dssp CCTTCSSSCCSCHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCccchhhhcCCHHHHHHHHHHHHHHHHhhcCCCHHHHHHHH
Confidence 367889999999999999999999999999888876665553
|
| >d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Long alpha-hairpin superfamily: Chaperone J-domain family: Chaperone J-domain domain: HSC20 (HSCB), N-terminal (J) domain species: Escherichia coli [TaxId: 562]
Probab=98.20 E-value=2.4e-07 Score=85.56 Aligned_cols=50 Identities=34% Similarity=0.558 Sum_probs=46.8
Q ss_pred CccchhhhcccccccccchhhhHHhhhhHHHHHhhcCchhHHHHHHHHcC
Q psy15216 532 KDLLYFNDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKLNG 581 (2602)
Q Consensus 532 ~s~~~l~d~~~~~~~~~~~~~~~~~~~~n~ay~~l~~p~~ra~yll~~~g 581 (2602)
.+..|..|++...++.++..+.+.++.||+||.+|+||.+|++|||+|+|
T Consensus 27 l~~~~HPDk~~~~~~~~~~~a~~~~~~i~~Ay~vL~dp~~R~~Yll~l~g 76 (76)
T d1fpoa1 27 LQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLHG 76 (76)
T ss_dssp HHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHTTT
T ss_pred HHHHhCccccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHccC
Confidence 35678899999999999999999999999999999999999999999988
|
| >d1fpoa2 a.23.1.1 (A:77-171) HSC20 (HSCB), C-terminal oligomerisation domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Open three-helical up-and-down bundle superfamily: HSC20 (HSCB), C-terminal oligomerisation domain family: HSC20 (HSCB), C-terminal oligomerisation domain domain: HSC20 (HSCB), C-terminal oligomerisation domain species: Escherichia coli [TaxId: 562]
Probab=98.13 E-value=6.2e-07 Score=86.32 Aligned_cols=42 Identities=26% Similarity=0.437 Sum_probs=36.3
Q ss_pred CCCCCccccCCCHHHHHHHHHHHHHHHhhhcchhHHHHhhhc
Q psy15216 1978 IDLNTKLNLNFSHDFLEQQMKWRETLSIIKNKKDKVKFMALL 2019 (2602)
Q Consensus 1978 ~~~~~~~~~~~~~~~lm~~~e~~E~l~~~~~~~~~~~~~~~~ 2019 (2602)
.|+..|++|.+||+|||+||||||+|+++..+.|...+..|.
T Consensus 1 ~d~~~E~~T~~DpeFLMeqME~RE~lee~~~~~d~~~l~~l~ 42 (95)
T d1fpoa2 1 FDLASEQHTVRDTAFLMEQLELREELDEIEQAKDEARLESFI 42 (95)
T ss_dssp CCTTCSSSCCSCHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCccchhhhcCCHHHHHHHHHHHHHHHHhhcCCCHHHHHHHH
Confidence 377889999999999999999999999998877777666553
|
| >d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A {Acidaminococcus fermentans [TaxId: 905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: BadF/BadG/BcrA/BcrD-like domain: Hydroxyglutaryl-CoA dehydratase component A species: Acidaminococcus fermentans [TaxId: 905]
Probab=98.09 E-value=0.00011 Score=85.83 Aligned_cols=70 Identities=14% Similarity=0.081 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCccccceEEEecCccchHHHHHHHHhhccCcccCcCCcchHhHHHHHHHhHH
Q psy15216 924 ITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANF 997 (2602)
Q Consensus 924 l~~~~~~~~~~~i~~~l~~a~~~~~~i~~V~LvGG~sr~P~v~~~l~~~f~~~~~~~~~p~~aVa~GAa~~a~~ 997 (2602)
++...++.+...+...+... .+.+.|+++||.++.|++++.+++.++.++..+.+|..+.|+|||++|..
T Consensus 186 i~~~~~~~~~~~~~~~~~~~----~~~~~Iv~gGGv~~~~~~~~~l~~~l~~~i~~~~~~~~agaiGAA~lA~~ 255 (259)
T d1huxa_ 186 IIAGIHRSVASRVIGLANRV----GIVKDVVMTGGVAQNYGVRGALEEGLGVEIKTSPLAQYNGALGAALYAYK 255 (259)
T ss_dssp HHHHHHHHHHHHHHHHHHTT----CCCSSEEEESGGGGCHHHHHHHHHHHCSCEECCGGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc----cCCCcEEEEccccccHHHHHHHHHHHCCCEEcCCCccHHHHHHHHHHHHH
Confidence 33444444444444444432 34677999999999999999999999999999999999999999999964
|
| >d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A {Acidaminococcus fermentans [TaxId: 905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: BadF/BadG/BcrA/BcrD-like domain: Hydroxyglutaryl-CoA dehydratase component A species: Acidaminococcus fermentans [TaxId: 905]
Probab=98.06 E-value=0.00012 Score=85.53 Aligned_cols=72 Identities=14% Similarity=0.069 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCccccceEEEEeCccchHHHHHHHHhhcCCcccCCCCccchhhhHHHHHhHHh
Q psy15216 2319 TITQHLVNRTILLSSKALMDANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGAAIQANFL 2394 (2602)
Q Consensus 2319 ~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~aVa~GAa~~a~~~ 2394 (2602)
+++...++.+...+...+... .+.+.|+++||.++.|.+++.+++.++.++..+.+|..+.|+|||++|...
T Consensus 185 ~i~~~~~~~~~~~~~~~~~~~----~~~~~Iv~gGGv~~~~~~~~~l~~~l~~~i~~~~~~~~agaiGAA~lA~~~ 256 (259)
T d1huxa_ 185 DIIAGIHRSVASRVIGLANRV----GIVKDVVMTGGVAQNYGVRGALEEGLGVEIKTSPLAQYNGALGAALYAYKK 256 (259)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT----CCCSSEEEESGGGGCHHHHHHHHHHHCSCEECCGGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc----cCCCcEEEEccccccHHHHHHHHHHHCCCEEcCCCccHHHHHHHHHHHHHH
Confidence 334444444444444444433 245779999999999999999999999999999999999999999999654
|
| >d1iuea_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: 2Fe-2S ferredoxin-like family: 2Fe-2S ferredoxin-related domain: 2Fe-2S ferredoxin species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=97.98 E-value=2.3e-06 Score=82.82 Aligned_cols=62 Identities=19% Similarity=0.314 Sum_probs=48.6
Q ss_pred cccccCCCchHHHHHhhcCcccccccccccccCCceEEEcCCC-Cc--CCCCCHHHHHHhcccCCCCCCCccCCC
Q psy15216 2531 AIFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGF-NE--INKANEVEEDMLNKAWGLEENSRLSCQ 2602 (2602)
Q Consensus 2531 ~~ve~~~g~~~~~~~~~~~~~~~~~c~g~~~c~tch~~~~~~~-~~--~~~~~~~e~~~l~~~~~~~~~srl~cq 2602 (2602)
+++++..|.++|++++++|+.|...|++ ..|+||++.|.+|. .. -+..+++|.+ .+.||+||
T Consensus 14 ~~~~~~~getlLda~~~~gi~i~~~C~~-G~CgtC~~~v~~G~v~~~~~~~l~~~e~~---------~g~~L~C~ 78 (98)
T d1iuea_ 14 KKIECNEDEYILDASERQNVELPYSCRG-GSCSTCAAKLVEGEVDNDDQSYLDEEQIK---------KKYILLCT 78 (98)
T ss_dssp EEEEEETTSCHHHHHHHTTCCCCCSSCS-SSSSTTEEEEEESCEECTTCCSSCHHHHH---------TTEEEGGG
T ss_pred EEEEECCCCcHHHHHHHcCCCeEEcCCc-eEcCCCEEEEecCcCccCccccCChhHHh---------cCeEEecC
Confidence 6788899999999999999999999977 79999999999884 21 1222333322 47799998
|
| >d1jq4a_ d.15.4.2 (A:) Methane monooxygenase reductase N-terminal domain {Methylococcus capsulatus [TaxId: 414]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: 2Fe-2S ferredoxin-like family: 2Fe-2S ferredoxin domains from multidomain proteins domain: Methane monooxygenase reductase N-terminal domain species: Methylococcus capsulatus [TaxId: 414]
Probab=97.97 E-value=5.2e-07 Score=87.86 Aligned_cols=66 Identities=27% Similarity=0.454 Sum_probs=48.8
Q ss_pred ccccCCCchHHHHHhhcCcccccccccccccCCceEEEcCCCCcCCCCCHHHHHHhcccCCCCCCCccCCC
Q psy15216 2532 IFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVEEDMLNKAWGLEENSRLSCQ 2602 (2602)
Q Consensus 2532 ~ve~~~g~~~~~~~~~~~~~~~~~c~g~~~c~tch~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~srl~cq 2602 (2602)
.++++.|.+||++++++|+.|...|+| ..|+||++.|.+|...+++..+ ..|.. ...+.+.||+||
T Consensus 18 ~~~~~~g~slLdaa~~~Gi~i~~~C~~-G~Cg~C~~~v~~G~~~~~~~~~---~~L~~-~e~~~g~~L~Cq 83 (98)
T d1jq4a_ 18 RFECRSDEDVITAALRQNIFLMSSCRE-GGCATCKALCSEGDYDLKGCSV---QALPP-EEEEEGLVLLCR 83 (98)
T ss_dssp EEEEESCCTHHHHHHHHTCCCCCSCCS-SCCCCCCBCEEECCCCCCCSCT---TTSCH-HHHHHHCBCTTT
T ss_pred EEEeCCCchHHHHHHHcCCCeEEcCCC-ceeCCceEEEEECeEecCcccc---ccCCH-hHHhcCeEEecc
Confidence 477889999999999999999999987 6899999999988644443222 11111 012346899998
|
| >d1doia_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: 2Fe-2S ferredoxin-like family: 2Fe-2S ferredoxin-related domain: 2Fe-2S ferredoxin species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=97.96 E-value=1.1e-06 Score=89.02 Aligned_cols=66 Identities=23% Similarity=0.415 Sum_probs=50.3
Q ss_pred cccccCCCchHHHHHhhcCcccccccccccccCCceEEEcCCCCcCCCCCHHHHHHhcccCCCCCCCccCCC
Q psy15216 2531 AIFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVEEDMLNKAWGLEENSRLSCQ 2602 (2602)
Q Consensus 2531 ~~ve~~~g~~~~~~~~~~~~~~~~~c~g~~~c~tch~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~srl~cq 2602 (2602)
.+++++.|.+||++++++|+.|...|++ ..|+|||+.|.+|...++.....+...+ ....+||+||
T Consensus 38 ~t~~v~~g~tlLdaa~~aGi~ip~~Cr~-G~CgsC~~~v~~G~~~~~~~~~l~~~e~-----~~~g~~L~Cq 103 (128)
T d1doia_ 38 GSLEVNEGEYILEAAEAQGYDWPFSCRA-GACANCAAIVLEGDIDMDMQQILSDEEV-----EDKNVRLTCI 103 (128)
T ss_dssp EEEECCTTSCHHHHHHHTTCCCCCSSSS-SSSSTTEEEEEESCEEECCCSSSCHHHH-----HTSCEEEGGG
T ss_pred eEEEECcCChHHHHHHHcCCCCccCCCC-CcCCCCceEeeeCCcccCcccCCCHHHH-----HhCCEEEeee
Confidence 5789999999999999999999999988 8999999999998633433221111111 1347999998
|
| >d1a70a_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: 2Fe-2S ferredoxin-like family: 2Fe-2S ferredoxin-related domain: 2Fe-2S ferredoxin species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=97.92 E-value=1.6e-06 Score=83.83 Aligned_cols=42 Identities=19% Similarity=0.396 Sum_probs=38.0
Q ss_pred cccccCCCchHHHHHhhcCcccccccccccccCCceEEEcCCC
Q psy15216 2531 AIFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGF 2573 (2602)
Q Consensus 2531 ~~ve~~~g~~~~~~~~~~~~~~~~~c~g~~~c~tch~~~~~~~ 2573 (2602)
+.++++.|.+||++++++|++|...|++ +.|+||++.|.+|.
T Consensus 14 ~~~~~~~g~tlL~a~~~~Gi~i~~~C~~-G~CgtC~~~v~~G~ 55 (97)
T d1a70a_ 14 VEFQCPDDVYILDAAEEEGIDLPYSCRA-GSCSSCAGKLKTGS 55 (97)
T ss_dssp EEEEEETTSCHHHHHHHTTCCCCCSSSS-SCSSTTEEEEEESC
T ss_pred EEEEeCCCchHHHHHHHcCCCeeeCCCc-EEcCCCEeEeecCc
Confidence 4678889999999999999999998865 89999999999884
|
| >d2fug33 d.15.4.2 (3:1-95) Nadh-quinone oxidoreductase chain 3, Nqo3, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: 2Fe-2S ferredoxin-like family: 2Fe-2S ferredoxin domains from multidomain proteins domain: Nadh-quinone oxidoreductase chain 3, Nqo3, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=97.90 E-value=2.2e-06 Score=83.20 Aligned_cols=72 Identities=18% Similarity=0.142 Sum_probs=46.9
Q ss_pred hccccCCCchhHHHHhcccchhhhcc-----cccccccCcEEEccCccccCCCCHHHHHHhhcccCcccccccccccc
Q psy15216 1136 IFNENSGISLCDALLKNSIFIEHACE-----KSCACATCHVIIREGFNEINKANEVEEDMLNKAWGLEENSRLSFDAK 1208 (2602)
Q Consensus 1136 ~~~~~~g~~~~~~~~~~~~~~~~~c~-----g~~~c~tch~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~srl~~d~~ 1208 (2602)
+++..+|.+||++++++|+.+.+.|+ +...|+||||.|.+++..+++....|.+.+...+ ..+..||+|+..
T Consensus 10 ~~~v~~g~tll~a~~~~gi~ip~~C~~~~~~~~G~C~~C~V~v~~g~~~~~~~~~~~~~~~~~~~-~~~~~rlaCqt~ 86 (95)
T d2fug33 10 IVEVPPGTSVMDAVFHAGYDVPLFCSEKHLSPIGACRMCLVRIGLPKKGPDGKPLLNEKGEPEIQ-WQPKLAASCVTA 86 (95)
T ss_dssp EEEECTTCBHHHHHHHHTCCCCCCSCCTTSCCCSCSTTSEEEEEC------------------CC-BCSSCEETTTCB
T ss_pred EEEECCCCcHHHHHHhcCCCCCccccCCCcCcccccCCCEEEEccCccccCcccchhhhhhhHhh-cCCCccCcCcCC
Confidence 57889999999999999999999996 4689999999999998766666777777776543 345689999975
|
| >d1frda_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Cyanobacterium (Anabaena sp.), pcc 7119 and 7120 [TaxId: 1167]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: 2Fe-2S ferredoxin-like family: 2Fe-2S ferredoxin-related domain: 2Fe-2S ferredoxin species: Cyanobacterium (Anabaena sp.), pcc 7119 and 7120 [TaxId: 1167]
Probab=97.89 E-value=1.5e-06 Score=84.43 Aligned_cols=62 Identities=16% Similarity=0.332 Sum_probs=47.8
Q ss_pred cccccCCCchHHHHHhhcCcccccccccccccCCceEEEcCCCCcCCCC---CHHHHHHhcccCCCCCCCccCCC
Q psy15216 2531 AIFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFNEINKA---NEVEEDMLNKAWGLEENSRLSCQ 2602 (2602)
Q Consensus 2531 ~~ve~~~g~~~~~~~~~~~~~~~~~c~g~~~c~tch~~~~~~~~~~~~~---~~~e~~~l~~~~~~~~~srl~cq 2602 (2602)
++++++.|.++|++++++|++|...|+| ..|+||++.|.++.....+. +++|. ....||+||
T Consensus 16 ~ti~v~~g~siLdaa~~~Gi~i~~~C~~-G~CgtC~~~v~~G~~~~~~~~~l~~~~~---------~~g~~L~C~ 80 (98)
T d1frda_ 16 TTIEIDEETTILDGAEENGIELPFSCHS-GSCSSCVGKVVEGEVDQSDQIFLDDEQM---------GKGFALLCV 80 (98)
T ss_dssp EEEEEETTSCHHHHHHHTTCCCCCSSSS-SSSSTTEEEEEESCEECTTCCSCCHHHH---------HTTEEEGGG
T ss_pred EEEEeCCCChHHHHHHHcCCCEEEecCC-CeeCCCEEEeccCCcccccccccChhhh---------cCCeEEeee
Confidence 5677888999999999999999999988 57999999999885332222 22222 246799998
|
| >d1awda_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Chlorella fusca [TaxId: 3073]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: 2Fe-2S ferredoxin-like family: 2Fe-2S ferredoxin-related domain: 2Fe-2S ferredoxin species: Chlorella fusca [TaxId: 3073]
Probab=97.86 E-value=2.1e-06 Score=82.39 Aligned_cols=62 Identities=15% Similarity=0.267 Sum_probs=48.5
Q ss_pred cccccCCCchHHHHHhhcCcccccccccccccCCceEEEcCCCCcC---CCCCHHHHHHhcccCCCCCCCccCCC
Q psy15216 2531 AIFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFNEI---NKANEVEEDMLNKAWGLEENSRLSCQ 2602 (2602)
Q Consensus 2531 ~~ve~~~g~~~~~~~~~~~~~~~~~c~g~~~c~tch~~~~~~~~~~---~~~~~~e~~~l~~~~~~~~~srl~cq 2602 (2602)
++++++.|.+||++++++|++|...|++ ..|+||++.|.+|.-.. ...+++|. ...-||+||
T Consensus 12 ~~~~~~~~~slL~aa~~~Gi~i~~~C~~-G~CgtC~~~v~~G~v~~~~~~~l~~~e~---------~~g~~L~C~ 76 (94)
T d1awda_ 12 ETIECPEDTYILDAAEEAGLDLPYSCRA-GACSSCAGKVESGEVDQSDQSFLDDAQM---------GKGFVLTCV 76 (94)
T ss_dssp EEEECCTTSCHHHHHHHTTCCCCCSSSS-SSSSTTEEEEEESCEECTTCCSSCHHHH---------HTTEEEGGG
T ss_pred EEEEeCCCCcHHHHHHHcCCcEEEecCC-CccCCceEEEeeceEcccccccCCHHHH---------hCCcEEEee
Confidence 6788899999999999999999999999 79999999999885111 12223332 236789997
|
| >d1frra_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Equisetum arvense [TaxId: 3258]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: 2Fe-2S ferredoxin-like family: 2Fe-2S ferredoxin-related domain: 2Fe-2S ferredoxin species: Equisetum arvense [TaxId: 3258]
Probab=97.85 E-value=4.9e-06 Score=79.89 Aligned_cols=62 Identities=19% Similarity=0.317 Sum_probs=48.6
Q ss_pred cccccCCCchHHHHHhhcCcccccccccccccCCceEEEcCCCCcC---CCCCHHHHHHhcccCCCCCCCccCCC
Q psy15216 2531 AIFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFNEI---NKANEVEEDMLNKAWGLEENSRLSCQ 2602 (2602)
Q Consensus 2531 ~~ve~~~g~~~~~~~~~~~~~~~~~c~g~~~c~tch~~~~~~~~~~---~~~~~~e~~~l~~~~~~~~~srl~cq 2602 (2602)
++++++.|.++|++++++|++|...|++ ..|+||++.|.+|.-.. +..+++|. ....||+||
T Consensus 13 ~~~~~~~g~slLda~~~~Gi~ip~~C~~-G~CgtC~~~v~~G~v~~~~~~~l~~~e~---------~~g~~L~C~ 77 (95)
T d1frra_ 13 FTLDVPEGTTILDAAEEAGYDLPFSCRA-GACSSCLGKVVSGSVDESEGSFLDDGQM---------EEGFVLTCI 77 (95)
T ss_dssp EEEEECTTCCHHHHHHHTTCCCCCSSSS-SSSSTTEEEEEESCEECTTCCSCCHHHH---------HTTEEETTT
T ss_pred EEEEECCCCcHHHHHHHcCCCEEeccCC-cEeCCCEEEEecceEcccccccCCHHHH---------hcCcEEeee
Confidence 5788999999999999999999999988 79999999999884111 12233332 246799998
|
| >d1czpa_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Cyanobacterium (Anabaena sp.), pcc 7119 and 7120 [TaxId: 1167]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: 2Fe-2S ferredoxin-like family: 2Fe-2S ferredoxin-related domain: 2Fe-2S ferredoxin species: Cyanobacterium (Anabaena sp.), pcc 7119 and 7120 [TaxId: 1167]
Probab=97.76 E-value=3.3e-06 Score=81.61 Aligned_cols=65 Identities=18% Similarity=0.310 Sum_probs=46.7
Q ss_pred cccccCCCchHHHHHhhcCcccccccccccccCCceEEEcCCCCcCCCCCHHHHHHhcccCCCCCCCccCCC
Q psy15216 2531 AIFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVEEDMLNKAWGLEENSRLSCQ 2602 (2602)
Q Consensus 2531 ~~ve~~~g~~~~~~~~~~~~~~~~~c~g~~~c~tch~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~srl~cq 2602 (2602)
++++++.|.++|++++++|++|...|++ ..|+||++.|.+|.-...+...-+++. .....||+||
T Consensus 16 ~~~~v~~~~slL~a~~~~Gi~ip~~C~~-G~CgtC~~~v~~G~v~~~~~~~l~~~e------~~~g~~L~C~ 80 (98)
T d1czpa_ 16 HEIEVPDDEYILDAAEEQGYDLPFSCRA-GACSTCAGKLVSGTVDQSDQSFLDDDQ------IEAGYVLTCV 80 (98)
T ss_dssp EEEEEETTSCHHHHHHHTTCCCCCSSSS-SSSSTTEEEEEESCEECTTCCSSCHHH------HHTTEEEGGG
T ss_pred EEEEeCcCChHHHHHHHcCCCeEEecCC-cccCCCeeEEecccccccccccCChhH------hcCCeEEecc
Confidence 4566778899999999999999999977 699999999998853322222111111 2234689997
|
| >d2piaa3 d.15.4.2 (A:224-321) Phthalate dioxygenase reductase, C-terminal domain {Pseudomonas cepacia, db01 [TaxId: 292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: 2Fe-2S ferredoxin-like family: 2Fe-2S ferredoxin domains from multidomain proteins domain: Phthalate dioxygenase reductase, C-terminal domain species: Pseudomonas cepacia, db01 [TaxId: 292]
Probab=97.46 E-value=2.1e-05 Score=75.81 Aligned_cols=63 Identities=16% Similarity=0.367 Sum_probs=47.1
Q ss_pred cccccCCCchHHHHHhhcCcccccccccccccCCceEEEcCCCCcCCCCCHHHHHHhcccCCCCCCCccCCC
Q psy15216 2531 AIFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVEEDMLNKAWGLEENSRLSCQ 2602 (2602)
Q Consensus 2531 ~~ve~~~g~~~~~~~~~~~~~~~~~c~g~~~c~tch~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~srl~cq 2602 (2602)
++++++.|.+||++++++|+.|...|.+ ..|+||++.|.+|.-...+ .+|.. ..+...||+||
T Consensus 24 ~~~~v~~~~slL~aa~~~Gi~ip~~C~~-G~CgtC~~~v~~G~v~~~~------~~~~~--~~~~~~~L~C~ 86 (98)
T d2piaa3 24 TSFEIPANRSILEVLRDANVRVPSSCES-GTCGSCKTALCSGEADHRD------MVLRD--DEKGTQIMVCV 86 (98)
T ss_dssp CEEEECTTSCHHHHHHHTTCCCCCSCSS-SSSCTTEEEEEESCEECCC------SSCCT--TTTTTEEETTT
T ss_pred EEEEECcCCcHHHHHHhcCCcccccCCc-cEeCCCEEEEEeeceecCC------CCCCh--HHhCCcEEEee
Confidence 5678889999999999999999999976 6899999999988411111 11111 12357899998
|
| >d1nbwa3 c.55.1.6 (A:406-607) ATPase domain of the glycerol dehydratase reactivase alpha subunit {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ATPase domain of dehydratase reactivase alpha subunit domain: ATPase domain of the glycerol dehydratase reactivase alpha subunit species: Klebsiella pneumoniae [TaxId: 573]
Probab=97.20 E-value=0.0011 Score=66.84 Aligned_cols=159 Identities=18% Similarity=0.276 Sum_probs=86.6
Q ss_pred ceEEEEEeCCceEEEEEEEEeCCEEEEEEEecCCCCchhHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhccc
Q psy15216 2214 GIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQ 2293 (2602)
Q Consensus 2214 ~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~ 2293 (2602)
....|+|+||||+|.+++.-++....+ .-.| -|+-+...+...+- ..+ +.-+|.+|+---..
T Consensus 4 ~plaIlDlG~GStDasii~~~g~v~av-hlAG----AG~mVTmlI~~eLG---------l~d----~~lAE~IKkyPlak 65 (202)
T d1nbwa3 4 APLAILDLGAGSTDAAIVNAEGQITAV-HLAG----AGNMVSLLIKTELG---------LED----LSLAEAIKKYPLAK 65 (202)
T ss_dssp SSEEEEEECSSEEEEEEECSSSCEEEE-EEEC----CHHHHHHHHHHHHT---------CSC----HHHHHHHHHSCEEE
T ss_pred CceEEEEcCCCccchhhccCCCcEEEE-EecC----CchhhHHHHHHHhC---------CCc----HHHHHHHhhcchhh
Confidence 357899999999999998766543333 2233 24444433322211 111 13467777742111
Q ss_pred ceEEEEEEecC-----------------------Cc--eEEEEcCHHHHHHHHHHHHHHHH-HHHHHHHHHcCC--Cccc
Q psy15216 2294 SSVKLNVKLSD-----------------------KK--IVNITIDMKQFFTITQHLVNRTI-LLSSKALMDANL--TIKD 2345 (2602)
Q Consensus 2294 ~~~~~~i~~~~-----------------------~~--~~~~~itr~~fe~l~~~~~~~~~-~~i~~~l~~~~~--~~~~ 2345 (2602)
-+.-+.+...+ +. .+.-.++-+++..+-+..-+++. .-+.++|++... +..+
T Consensus 66 VEslf~irhEdG~v~Ff~~pl~p~~farvv~~~~~~lvP~~~~~~~Ekir~vR~~aK~~vfvtNa~RaL~~vsp~gnir~ 145 (202)
T d1nbwa3 66 VESLFSIRHENGAVEFFREALSPAVFAKVVYIKEGELVPIDNASPLEKIRLVRRQAKEKVFVTNCLRALRQVSPGGSIRD 145 (202)
T ss_dssp ECSSSEEEETTSCEEECSSCCCGGGTTCEEEEETTEEEEECCSSCHHHHHHHHHHHHHHHHHHHHHHHHSSSSTTCCSTT
T ss_pred hccceEEEecCCceEEecCCCChHHeeEEEEecCCceeecCCcccHHHHHHHHHHHhhHhHHHHHHHHHhhcCCCCCcCC
Confidence 00001111111 11 01223455555554444333332 123344444322 2368
Q ss_pred cceEEEEeCccchHHHHHHHHhhc-------C-CcccCCCCccchhhhHHHHH
Q psy15216 2346 INNVILVGGSTRMKHIHEGVSNFF-------K-TTLLTSIDPDKAVVFGAAIQ 2390 (2602)
Q Consensus 2346 i~~V~LvGG~s~~p~v~~~l~~~f-------~-~~~~~~~~p~~aVa~GAa~~ 2390 (2602)
|..|+|||||+.=--|-+++.+.+ | ..+.-..-|..|||.|.++.
T Consensus 146 i~fvVlvGGsalDfEip~~vtdaLs~y~vVaGRgNIrG~eGPRnAVAtGLvls 198 (202)
T d1nbwa3 146 IAFVVLVGGSSLDFEIPQLITEALSHYGVVAGQGNIRGTEGPRNAVATGLLLA 198 (202)
T ss_dssp CCEEEEESGGGGSSSHHHHHHHHHHTTTCEEEECCGGGTSCSCCHHHHHHHHH
T ss_pred CceEEEecCchhhhhHHHHHHHHHhhCceeeeccccccccCcHHHHHHHHhhh
Confidence 999999999998777777777665 2 25666778999999999863
|
| >d1krha3 d.15.4.2 (A:2-105) Benzoate dioxygenase reductase, N-terminal domain {Acinetobacter sp. [TaxId: 472]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: 2Fe-2S ferredoxin-like family: 2Fe-2S ferredoxin domains from multidomain proteins domain: Benzoate dioxygenase reductase, N-terminal domain species: Acinetobacter sp. [TaxId: 472]
Probab=97.18 E-value=2.2e-05 Score=76.74 Aligned_cols=70 Identities=23% Similarity=0.397 Sum_probs=50.1
Q ss_pred hccccCCCchhHHHHhcccchhhhcccccccccCcEEEccCccccCCCCHHHHHHhhcccCcccccccccccc
Q psy15216 1136 IFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVEEDMLNKAWGLEENSRLSFDAK 1208 (2602)
Q Consensus 1136 ~~~~~~g~~~~~~~~~~~~~~~~~c~g~~~c~tch~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~srl~~d~~ 1208 (2602)
+++...|.+||++++++|+.+...|++ ..|+||+|.|.++...+++....| ..| ...+.....||+|+++
T Consensus 16 ~~~~~~getlL~aa~~~gi~i~~~C~~-G~CgtC~v~v~~G~~~~~~~~~~~-~~l-~~~e~~~g~~LaCq~~ 85 (104)
T d1krha3 16 FICIAQGETLSDAAYRQQINIPMDCRE-GECGTCRAFCESGNYDMPEDNYIE-DAL-TPEEAQQGYVLACQCR 85 (104)
T ss_dssp EEEECTTCCHHHHHHHTTCCCSCSCSS-SSSCTTEEEEEECCEECCGGGSCT-TTC-CHHHHHHTEEETTTCE
T ss_pred EEEeCCCCcHHHHHHHcCCCCccccCC-cccCCCEEEeeeCccccccccccc-ccC-CHHHHhcCcEEeeeCE
Confidence 578899999999999999999999966 799999999998853333211111 111 1112234569999976
|
| >d1nbwa3 c.55.1.6 (A:406-607) ATPase domain of the glycerol dehydratase reactivase alpha subunit {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ATPase domain of dehydratase reactivase alpha subunit domain: ATPase domain of the glycerol dehydratase reactivase alpha subunit species: Klebsiella pneumoniae [TaxId: 573]
Probab=97.14 E-value=0.0015 Score=65.79 Aligned_cols=159 Identities=18% Similarity=0.260 Sum_probs=88.1
Q ss_pred ceEEEEEeCCceEEEEEEEEECCEEEEEEEecCCCCcchHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHcccc
Q psy15216 818 GIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQ 897 (2602)
Q Consensus 818 ~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~l~~~~e~~K~~LS~~ 897 (2602)
....|+|+||||+|.|++.-++....+.. .| .|+-+...+. .++... + +.-+|.+|+---..
T Consensus 4 ~plaIlDlG~GStDasii~~~g~v~avhl-AG----AG~mVTmlI~----~eLGl~--d-------~~lAE~IKkyPlak 65 (202)
T d1nbwa3 4 APLAILDLGAGSTDAAIVNAEGQITAVHL-AG----AGNMVSLLIK----TELGLE--D-------LSLAEAIKKYPLAK 65 (202)
T ss_dssp SSEEEEEECSSEEEEEEECSSSCEEEEEE-EC----CHHHHHHHHH----HHHTCS--C-------HHHHHHHHHSCEEE
T ss_pred CceEEEEcCCCccchhhccCCCcEEEEEe-cC----CchhhHHHHH----HHhCCC--c-------HHHHHHHhhcchhh
Confidence 35789999999999999886654433332 22 2444443332 222211 1 24578888753211
Q ss_pred cceEEEEEecC-----------------------Cc--eEEEEeCHHHHHHHHHHHHHHHH-HHHHHHHHHcCC--Cccc
Q psy15216 898 SSVKLNVKLSD-----------------------KK--IVNITIDMKQFFTITQHLVNRTI-LLSSKALMDANL--TIKD 949 (2602)
Q Consensus 898 ~~~~~~i~~~~-----------------------~~--~~~~~itr~~fe~l~~~~~~~~~-~~i~~~l~~a~~--~~~~ 949 (2602)
-+.-+.+...| +. .+.-.++-+++..+-...-+++. .-+.++|+.... +..+
T Consensus 66 VEslf~irhEdG~v~Ff~~pl~p~~farvv~~~~~~lvP~~~~~~~Ekir~vR~~aK~~vfvtNa~RaL~~vsp~gnir~ 145 (202)
T d1nbwa3 66 VESLFSIRHENGAVEFFREALSPAVFAKVVYIKEGELVPIDNASPLEKIRLVRRQAKEKVFVTNCLRALRQVSPGGSIRD 145 (202)
T ss_dssp ECSSSEEEETTSCEEECSSCCCGGGTTCEEEEETTEEEEECCSSCHHHHHHHHHHHHHHHHHHHHHHHHSSSSTTCCSTT
T ss_pred hccceEEEecCCceEEecCCCChHHeeEEEEecCCceeecCCcccHHHHHHHHHHHhhHhHHHHHHHHHhhcCCCCCcCC
Confidence 11111111111 11 12224455665554444444432 223344444332 2368
Q ss_pred cceEEEecCccchHHHHHHHHhhc-------c-CcccCcCCcchHhHHHHHHH
Q psy15216 950 INNVILVGGSTRMKHIHEGVSNFF-------K-TTLLTSIDPDKAVVFGAAIQ 994 (2602)
Q Consensus 950 i~~V~LvGG~sr~P~v~~~l~~~f-------~-~~~~~~~~p~~aVa~GAa~~ 994 (2602)
|..|+|||||+.=--|-+++.+.+ | -.+.-..-|..|||.|.++.
T Consensus 146 i~fvVlvGGsalDfEip~~vtdaLs~y~vVaGRgNIrG~eGPRnAVAtGLvls 198 (202)
T d1nbwa3 146 IAFVVLVGGSSLDFEIPQLITEALSHYGVVAGQGNIRGTEGPRNAVATGLLLA 198 (202)
T ss_dssp CCEEEEESGGGGSSSHHHHHHHHHHTTTCEEEECCGGGTSCSCCHHHHHHHHH
T ss_pred CceEEEecCchhhhhHHHHHHHHHhhCceeeeccccccccCcHHHHHHHHhhh
Confidence 999999999998766666776655 2 23455678999999998863
|
| >d2d0oa3 c.55.1.6 (A:404-606) Diol dehydratase-reactivating factor large subunit DdrA {Klebsiella oxytoca [TaxId: 571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ATPase domain of dehydratase reactivase alpha subunit domain: Diol dehydratase-reactivating factor large subunit DdrA species: Klebsiella oxytoca [TaxId: 571]
Probab=97.07 E-value=0.0016 Score=65.48 Aligned_cols=79 Identities=24% Similarity=0.306 Sum_probs=51.7
Q ss_pred cCHHHHHHHHHHHHHHHH-HHHHHHHHHcC--CCccccceEEEEeCccchHHHHHHHHhhcC--------CcccCCCCcc
Q psy15216 2312 IDMKQFFTITQHLVNRTI-LLSSKALMDAN--LTIKDINNVILVGGSTRMKHIHEGVSNFFK--------TTLLTSIDPD 2380 (2602)
Q Consensus 2312 itr~~fe~l~~~~~~~~~-~~i~~~l~~~~--~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~--------~~~~~~~~p~ 2380 (2602)
++-++...+-+..-+++. .-+.++|+... -+..+|..|+|||||+.=--|-+++.+.+. ..+.-..-|.
T Consensus 109 ~~~Eki~~vRr~aK~kvfvtNa~RaL~~vsP~gnir~i~fVVlvGGsalDfEip~~vtdaLs~y~iVaGrgNIrG~eGPR 188 (203)
T d2d0oa3 109 LALEKVRAIRRSAKERVFVTNALRALRQVSPTGNIRDIPFVVLVGGSSLDFEVPQLVTDALAHYRLVAGRGNIRGSEGPR 188 (203)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCGGGCCEEEEESGGGGCSSHHHHHHHHTTTSSCEEEECCGGGTSTTS
T ss_pred ccHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCCcCCCCeEEEecCchhhhhHHHHHHHHHhhCceeeeccccccccCch
Confidence 344554444333333321 22334555542 334689999999999998888888887762 2466677899
Q ss_pred chhhhHHHHH
Q psy15216 2381 KAVVFGAAIQ 2390 (2602)
Q Consensus 2381 ~aVa~GAa~~ 2390 (2602)
.|||.|.++.
T Consensus 189 nAVAtGLvl~ 198 (203)
T d2d0oa3 189 NAVATGLILS 198 (203)
T ss_dssp CHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999874
|
| >d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.00 E-value=0.00075 Score=76.54 Aligned_cols=167 Identities=22% Similarity=0.281 Sum_probs=97.4
Q ss_pred EEEEeCCceEEEEEEEEECCEEEEEEEecCCCCcchHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHcccc---
Q psy15216 821 AVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQ--- 897 (2602)
Q Consensus 821 lV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~l~~~~e~~K~~LS~~--- 897 (2602)
+|+|+|.+.+.|+-+- +|.. +........+||.++++.|.+++.++.. ........ ...+.+|+.+...
T Consensus 5 lVVDiG~~~t~v~PV~--eG~~-l~~~~~~~~~GG~~lt~~l~~~L~~~~~-~~~~~~~~----~~~~~~ke~~~~~~~d 76 (225)
T d2fxua2 5 IVLDSGDGVTHNVPIY--EGYA-LPHAIMRLDLAGRDLTDYLMKILTERGY-SFVTTAER----EIVRDIKEKLCYVALD 76 (225)
T ss_dssp EEEEECSSCEEEEEEE--TTEE-CGGGCEEESCCHHHHHHHHHHHHHHHTC-CCCSHHHH----HHHHHHHHHHCCCCSS
T ss_pred EEEEcCCCcEEEEEEE--CCEE-chhceEEEECcHHHHHHHHHHHHhhccC-CcCCHHHH----HHHHHHHHHHhhcccc
Confidence 8999999999888553 3321 1122222579999999999988876521 11221111 1122233322111
Q ss_pred -----------cceEEEEEecCCceEEEEeCHHHHH---HHHHHHH-----HHHHHHHHHHHHHcCCC--ccccceEEEe
Q psy15216 898 -----------SSVKLNVKLSDKKIVNITIDMKQFF---TITQHLV-----NRTILLSSKALMDANLT--IKDINNVILV 956 (2602)
Q Consensus 898 -----------~~~~~~i~~~~~~~~~~~itr~~fe---~l~~~~~-----~~~~~~i~~~l~~a~~~--~~~i~~V~Lv 956 (2602)
........+.+|.. +++..+.|. -+++|.. ..+.++|.+++..+..+ +.-...|+|+
T Consensus 77 ~~~e~~~~~~~~~~~~~~~lpdg~~--i~i~~er~~~~E~lF~p~~~~~~~~gl~~~i~~sI~~~~~d~r~~l~~nIvl~ 154 (225)
T d2fxua2 77 FENEMATAASSSSLEKSYELPDGQV--ITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMS 154 (225)
T ss_dssp HHHHHHHHHHCSTTCEEEECTTSCE--EEESTHHHHHHHTTTCGGGGTCCSCCHHHHHHHHHHTSCHHHHHHHHTCEEEE
T ss_pred hhHHHhhcccCcccceeEECCCCCE--EEEchHhccccHhhcCccccCCccCChhHHHHHHhhcCCcchhhhhhcCEEEe
Confidence 11122333555554 445555542 2333311 13556666666654322 1224689999
Q ss_pred cCccchHHHHHHHHhhc--------cCcccCcCCcchHhHHHHHHHhHH
Q psy15216 957 GGSTRMKHIHEGVSNFF--------KTTLLTSIDPDKAVVFGAAIQANF 997 (2602)
Q Consensus 957 GG~sr~P~v~~~l~~~f--------~~~~~~~~~p~~aVa~GAa~~a~~ 997 (2602)
||+|.+|.+.++|++.. ..++..+.+|..++=.||+++|.+
T Consensus 155 GG~s~~~G~~~RL~~El~~~~~~~~~~~v~~~~~~~~~aW~Ggsilasl 203 (225)
T d2fxua2 155 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASL 203 (225)
T ss_dssp SGGGCSTTHHHHHHHHHHHHSCTTCCCCEECCTTTTSHHHHHHHHHHHC
T ss_pred CCcccCCchhHHHHhHHHHhhccccceEEecCCCCCeeEEeCHhhhhcC
Confidence 99999999999998754 234556678888999999999853
|
| >d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.99 E-value=0.00076 Score=76.49 Aligned_cols=168 Identities=21% Similarity=0.268 Sum_probs=98.0
Q ss_pred EEEEEeCCceEEEEEEEEeCCEEEEEEEecCCCCchhHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhcc---
Q psy15216 2216 FAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSY--- 2292 (2602)
Q Consensus 2216 vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~--- 2292 (2602)
=+|+|+|.+.+.|+-+- +|.. +........+||.++++.|.+++.++. .......... ..+..|+.+..
T Consensus 4 glVVDiG~~~t~v~PV~--eG~~-l~~~~~~~~~GG~~lt~~l~~~L~~~~-~~~~~~~~~~----~~~~~ke~~~~~~~ 75 (225)
T d2fxua2 4 GIVLDSGDGVTHNVPIY--EGYA-LPHAIMRLDLAGRDLTDYLMKILTERG-YSFVTTAERE----IVRDIKEKLCYVAL 75 (225)
T ss_dssp EEEEEECSSCEEEEEEE--TTEE-CGGGCEEESCCHHHHHHHHHHHHHHHT-CCCCSHHHHH----HHHHHHHHHCCCCS
T ss_pred EEEEEcCCCcEEEEEEE--CCEE-chhceEEEECcHHHHHHHHHHHHhhcc-CCcCCHHHHH----HHHHHHHHHhhccc
Confidence 48999999998887543 3321 111222358999999999999887642 1111111111 11222222211
Q ss_pred -----------cceEEEEEEecCCceEEEEcCHHHH---HHHHHHHH-----HHHHHHHHHHHHHcCCC--ccccceEEE
Q psy15216 2293 -----------QSSVKLNVKLSDKKIVNITIDMKQF---FTITQHLV-----NRTILLSSKALMDANLT--IKDINNVIL 2351 (2602)
Q Consensus 2293 -----------~~~~~~~i~~~~~~~~~~~itr~~f---e~l~~~~~-----~~~~~~i~~~l~~~~~~--~~~i~~V~L 2351 (2602)
.........+.++.. +++..+.| |-+++|.. ..+.++|.+++..+..+ +.-...|+|
T Consensus 76 d~~~e~~~~~~~~~~~~~~~lpdg~~--i~i~~er~~~~E~lF~p~~~~~~~~gl~~~i~~sI~~~~~d~r~~l~~nIvl 153 (225)
T d2fxua2 76 DFENEMATAASSSSLEKSYELPDGQV--ITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVM 153 (225)
T ss_dssp SHHHHHHHHHHCSTTCEEEECTTSCE--EEESTHHHHHHHTTTCGGGGTCCSCCHHHHHHHHHHTSCHHHHHHHHTCEEE
T ss_pred chhHHHhhcccCcccceeEECCCCCE--EEEchHhccccHhhcCccccCCccCChhHHHHHHhhcCCcchhhhhhcCEEE
Confidence 111122334566654 44555544 22333321 23566666676654322 112368999
Q ss_pred EeCccchHHHHHHHHhhc--------CCcccCCCCccchhhhHHHHHhHH
Q psy15216 2352 VGGSTRMKHIHEGVSNFF--------KTTLLTSIDPDKAVVFGAAIQANF 2393 (2602)
Q Consensus 2352 vGG~s~~p~v~~~l~~~f--------~~~~~~~~~p~~aVa~GAa~~a~~ 2393 (2602)
+||+|.+|.+.++|.+.+ ..++..+.+|..++=+|++++|..
T Consensus 154 ~GG~s~~~G~~~RL~~El~~~~~~~~~~~v~~~~~~~~~aW~Ggsilasl 203 (225)
T d2fxua2 154 SGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASL 203 (225)
T ss_dssp ESGGGCSTTHHHHHHHHHHHHSCTTCCCCEECCTTTTSHHHHHHHHHHHC
T ss_pred eCCcccCCchhHHHHhHHHHhhccccceEEecCCCCCeeEEeCHhhhhcC
Confidence 999999999999998754 134566778888999999999853
|
| >d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin-related protein 3, Arp3 species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.97 E-value=0.001 Score=77.05 Aligned_cols=169 Identities=17% Similarity=0.212 Sum_probs=96.5
Q ss_pred EEEEEeCCceEEEEEEEEeCCEEEEEEEecCCCCchhHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHh-----
Q psy15216 2216 FAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELL----- 2290 (2602)
Q Consensus 2216 vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~l~~~~e~~K~~l----- 2290 (2602)
=+|+|+|.+.++|+-+- +|..- .....-..+||.+++..|.+++.++. .......+. ...+..|+.+
T Consensus 5 GlVVDiG~~~T~v~PV~--eG~~l-~~~~~~~~~GG~~lt~~L~~~L~~~~-~~~~~~~~~----~~~~~~ke~~~~v~~ 76 (258)
T d1k8ka2 5 GTVIDSGDGVTHVIPVA--EGYVI-GSCIKHIPIAGRDITYFIQQLLRDRE-VGIPPEQSL----ETAKAVKERYSYVCP 76 (258)
T ss_dssp EEEEEESSSCEEEEEEE--TTEEC-GGGCEEESCSHHHHHHHHHHHHHTTC-CCCCGGGHH----HHHHHHHHHHCCCCS
T ss_pred EEEEEcCCCcEEEEEEE--CCEEc-hhheEEEeCcHHHHHHHHHHHHHHcC-CCCCcHHHH----HHHHhHHhhhccccc
Confidence 38999999999987552 33211 11122268999999999988886531 110001111 1112222221
Q ss_pred -----------ccc-ceEEEEEE-ecCCceEEEEcCHHHHH---HHHHHH------HHHHHHHHHHHHHHcCCCccc--c
Q psy15216 2291 -----------SYQ-SSVKLNVK-LSDKKIVNITIDMKQFF---TITQHL------VNRTILLSSKALMDANLTIKD--I 2346 (2602)
Q Consensus 2291 -----------s~~-~~~~~~i~-~~~~~~~~~~itr~~fe---~l~~~~------~~~~~~~i~~~l~~~~~~~~~--i 2346 (2602)
+.. ........ ........+.+..+.|. -++.|- ...+-++|.+++..+..+... .
T Consensus 77 d~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~er~~~~E~lF~p~~~~~~~~~~l~~~i~~si~~~~~d~r~~L~ 156 (258)
T d1k8ka2 77 DLVKEFNKYDTDGSKWIKQYTGINAISKKEFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLY 156 (258)
T ss_dssp CHHHHHHHHHHSGGGTCEEEEEECTTTCCEEEEEECTHHHHHHHTTTCGGGTCTTCCCCHHHHHHHHHHHSCGGGTTHHH
T ss_pred chHHHHHhhcccccccccccccccccCCCCeEEecCccceeccHHHhhhhhhcccccccchHHHHHHHHhccHHhhHHHH
Confidence 111 11222222 22233456677776663 223221 123667788888877543322 4
Q ss_pred ceEEEEeCccchHHHHHHHHhhcC------------------------CcccCCCCccchhhhHHHHHhH
Q psy15216 2347 NNVILVGGSTRMKHIHEGVSNFFK------------------------TTLLTSIDPDKAVVFGAAIQAN 2392 (2602)
Q Consensus 2347 ~~V~LvGG~s~~p~v~~~l~~~f~------------------------~~~~~~~~p~~aVa~GAa~~a~ 2392 (2602)
..|+|+||+|.+|.+.++|.+.+. .++..+.++..++=+||+++|.
T Consensus 157 ~nIvl~GG~s~~~Gf~eRL~~EL~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~r~~s~W~Ggsila~ 226 (258)
T d1k8ka2 157 KNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSGGRLKPKPIDVQVITHHMQRYAVWFGGSMLAS 226 (258)
T ss_dssp HCEEEESGGGCSTTHHHHHHHHHHHHHHHHHHHHHHHC----CCCCCCCCEECCTTCTTHHHHHHHHHTT
T ss_pred hCEEEecCcccCCCHHHHHHHHHHhhcchhhhhhhhccccccCCCCceeeEecCCCCCceehHHHHHHHc
Confidence 779999999999999998865441 1234455677788899999885
|
| >d1jq4a_ d.15.4.2 (A:) Methane monooxygenase reductase N-terminal domain {Methylococcus capsulatus [TaxId: 414]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: 2Fe-2S ferredoxin-like family: 2Fe-2S ferredoxin domains from multidomain proteins domain: Methane monooxygenase reductase N-terminal domain species: Methylococcus capsulatus [TaxId: 414]
Probab=96.93 E-value=6.4e-05 Score=72.73 Aligned_cols=67 Identities=25% Similarity=0.386 Sum_probs=48.7
Q ss_pred ccccCCCchhHHHHhcccchhhhcccccccccCcEEEccCccccCCCCHHHHHHhhcccCcccccccccccc
Q psy15216 1137 FNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVEEDMLNKAWGLEENSRLSFDAK 1208 (2602)
Q Consensus 1137 ~~~~~g~~~~~~~~~~~~~~~~~c~g~~~c~tch~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~srl~~d~~ 1208 (2602)
++...|.+||++++++|+.+...|++ ..|++|++.|.++...+++.++ ..|. ..+..+..||+|+++
T Consensus 19 ~~~~~g~slLdaa~~~Gi~i~~~C~~-G~Cg~C~~~v~~G~~~~~~~~~---~~L~-~~e~~~g~~L~Cq~~ 85 (98)
T d1jq4a_ 19 FECRSDEDVITAALRQNIFLMSSCRE-GGCATCKALCSEGDYDLKGCSV---QALP-PEEEEEGLVLLCRTY 85 (98)
T ss_dssp EEEESCCTHHHHHHHHTCCCCCSCCS-SCCCCCCBCEEECCCCCCCSCT---TTSC-HHHHHHHCBCTTTCC
T ss_pred EEeCCCchHHHHHHHcCCCeEEcCCC-ceeCCceEEEEECeEecCcccc---ccCC-HhHHhcCeEEeccCE
Confidence 46788999999999999999999987 5799999999988633333221 1111 112235579999986
|
| >d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin-related protein 3, Arp3 species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.93 E-value=0.0011 Score=76.81 Aligned_cols=168 Identities=17% Similarity=0.215 Sum_probs=96.7
Q ss_pred EEEEeCCceEEEEEEEEECCEEEEEEEecCCCCcchHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHc------
Q psy15216 821 AVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELL------ 894 (2602)
Q Consensus 821 lV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~l~~~~e~~K~~L------ 894 (2602)
+|+|+|.+.++|+-+- +|..- .....-..+||.+++..|.+++.++-. ....... ....+..|+.+
T Consensus 6 lVVDiG~~~T~v~PV~--eG~~l-~~~~~~~~~GG~~lt~~L~~~L~~~~~-~~~~~~~----~~~~~~~ke~~~~v~~d 77 (258)
T d1k8ka2 6 TVIDSGDGVTHVIPVA--EGYVI-GSCIKHIPIAGRDITYFIQQLLRDREV-GIPPEQS----LETAKAVKERYSYVCPD 77 (258)
T ss_dssp EEEEESSSCEEEEEEE--TTEEC-GGGCEEESCSHHHHHHHHHHHHHTTCC-CCCGGGH----HHHHHHHHHHHCCCCSC
T ss_pred EEEEcCCCcEEEEEEE--CCEEc-hhheEEEeCcHHHHHHHHHHHHHHcCC-CCCcHHH----HHHHHhHHhhhcccccc
Confidence 8999999999998653 33221 111122579999999999888765311 0000000 01122222221
Q ss_pred ----------ccc-cceEEEEE-ecCCceEEEEeCHHHHH---HHHHHH------HHHHHHHHHHHHHHcCCCcc--ccc
Q psy15216 895 ----------SYQ-SSVKLNVK-LSDKKIVNITIDMKQFF---TITQHL------VNRTILLSSKALMDANLTIK--DIN 951 (2602)
Q Consensus 895 ----------S~~-~~~~~~i~-~~~~~~~~~~itr~~fe---~l~~~~------~~~~~~~i~~~l~~a~~~~~--~i~ 951 (2602)
+.. ........ ........+.+..+.|. -+++|- ...+-++|.+++..+..+.. =..
T Consensus 78 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~er~~~~E~lF~p~~~~~~~~~~l~~~i~~si~~~~~d~r~~L~~ 157 (258)
T d1k8ka2 78 LVKEFNKYDTDGSKWIKQYTGINAISKKEFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYK 157 (258)
T ss_dssp HHHHHHHHHHSGGGTCEEEEEECTTTCCEEEEEECTHHHHHHHTTTCGGGTCTTCCCCHHHHHHHHHHHSCGGGTTHHHH
T ss_pred hHHHHHhhcccccccccccccccccCCCCeEEecCccceeccHHHhhhhhhcccccccchHHHHHHHHhccHHhhHHHHh
Confidence 111 11222332 22334556777777663 222221 12366777888887654322 247
Q ss_pred eEEEecCccchHHHHHHHHhhcc------------------------CcccCcCCcchHhHHHHHHHhH
Q psy15216 952 NVILVGGSTRMKHIHEGVSNFFK------------------------TTLLTSIDPDKAVVFGAAIQAN 996 (2602)
Q Consensus 952 ~V~LvGG~sr~P~v~~~l~~~f~------------------------~~~~~~~~p~~aVa~GAa~~a~ 996 (2602)
.|+|+||+|.+|.+.++|.+.+. .++..+.++..++=.||+++|.
T Consensus 158 nIvl~GG~s~~~Gf~eRL~~EL~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~r~~s~W~Ggsila~ 226 (258)
T d1k8ka2 158 NIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSGGRLKPKPIDVQVITHHMQRYAVWFGGSMLAS 226 (258)
T ss_dssp CEEEESGGGCSTTHHHHHHHHHHHHHHHHHHHHHHHC----CCCCCCCCEECCTTCTTHHHHHHHHHTT
T ss_pred CEEEecCcccCCCHHHHHHHHHHhhcchhhhhhhhccccccCCCCceeeEecCCCCCceehHHHHHHHc
Confidence 79999999999999998865441 1233445677888999999885
|
| >d2d0oa3 c.55.1.6 (A:404-606) Diol dehydratase-reactivating factor large subunit DdrA {Klebsiella oxytoca [TaxId: 571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ATPase domain of dehydratase reactivase alpha subunit domain: Diol dehydratase-reactivating factor large subunit DdrA species: Klebsiella oxytoca [TaxId: 571]
Probab=96.87 E-value=0.0042 Score=62.38 Aligned_cols=160 Identities=23% Similarity=0.283 Sum_probs=89.4
Q ss_pred ceEEEEEeCCceEEEEEEEEECCEEEEEEEecCCCCcchHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHcccc
Q psy15216 818 GIFAVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKELLSYQ 897 (2602)
Q Consensus 818 ~~vlV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~l~~~~e~~K~~LS~~ 897 (2602)
..+.++|+||||+|.|++.-++... -+.-.| .|+-+...+. .++... + +.-+|.+|+---..
T Consensus 4 ~PlAIlDlGaGStDAsii~~~g~v~-a~HlAG----AG~mVTmlI~----seLGl~--d-------~~lAE~IKkyPlak 65 (203)
T d2d0oa3 4 RPLAILDLGAGSTDASIINPKGDII-ATHLAG----AGDMVTMIIA----RELGLE--D-------RYLAEEIKKYPLAK 65 (203)
T ss_dssp SSEEEEEECSSEEEEEEECTTCCEE-EEEEEC----SHHHHHHHHH----HHHTCC--C-------HHHHHHHHHSCEEE
T ss_pred CceEEEEcCCCcccHHHhCCCCcEE-EEEecC----cchHhHHHHH----HhhCCC--c-------HHHHHHHhhcchhh
Confidence 4578999999999999987655432 222222 2444443322 222211 2 24578888753211
Q ss_pred cceEEEEEecCC-----------------------c--eEEEEeCHHHHHHHHHHHHHHHH-HHHHHHHHHcC--CCccc
Q psy15216 898 SSVKLNVKLSDK-----------------------K--IVNITIDMKQFFTITQHLVNRTI-LLSSKALMDAN--LTIKD 949 (2602)
Q Consensus 898 ~~~~~~i~~~~~-----------------------~--~~~~~itr~~fe~l~~~~~~~~~-~~i~~~l~~a~--~~~~~ 949 (2602)
-+.-+.+...|| . .+.-.++-+++..+-+..-+++. .-+.++|+... -+..+
T Consensus 66 VEslf~irhEdG~v~Ff~~pl~p~~farvv~~~~d~lvP~~~~~~~Eki~~vRr~aK~kvfvtNa~RaL~~vsP~gnir~ 145 (203)
T d2d0oa3 66 VESLFHLRHEDGSVQFFSTPLPPAVFARVCVVKADELVPLPGDLALEKVRAIRRSAKERVFVTNALRALRQVSPTGNIRD 145 (203)
T ss_dssp ECSSSEEEETTSCEEECSSCCCGGGTTCEEEECSSCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCGGG
T ss_pred hccceEEEecCCceEEecCCCChHHheEEEEecCCceeecCCcccHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCCcCC
Confidence 111111111111 1 11113444555544444333332 23345565543 33578
Q ss_pred cceEEEecCccchHHHHHHHHhhcc--------CcccCcCCcchHhHHHHHHHh
Q psy15216 950 INNVILVGGSTRMKHIHEGVSNFFK--------TTLLTSIDPDKAVVFGAAIQA 995 (2602)
Q Consensus 950 i~~V~LvGG~sr~P~v~~~l~~~f~--------~~~~~~~~p~~aVa~GAa~~a 995 (2602)
|..|+|||||+.=--|-+++.+.+. -.+.-..-|..|||.|.++.-
T Consensus 146 i~fVVlvGGsalDfEip~~vtdaLs~y~iVaGrgNIrG~eGPRnAVAtGLvl~y 199 (203)
T d2d0oa3 146 IPFVVLVGGSSLDFEVPQLVTDALAHYRLVAGRGNIRGSEGPRNAVATGLILSW 199 (203)
T ss_dssp CCEEEEESGGGGCSSHHHHHHHHTTTSSCEEEECCGGGTSTTSCHHHHHHHHHH
T ss_pred CCeEEEecCchhhhhHHHHHHHHHhhCceeeeccccccccCchHHHHHHHHHHh
Confidence 9999999999988878888877762 234455689999999988743
|
| >d1doia_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: 2Fe-2S ferredoxin-like family: 2Fe-2S ferredoxin-related domain: 2Fe-2S ferredoxin species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=96.78 E-value=0.00018 Score=72.46 Aligned_cols=67 Identities=22% Similarity=0.292 Sum_probs=49.7
Q ss_pred hccccCCCchhHHHHhcccchhhhcccccccccCcEEEccCccccCCCCHHHHHHhhcccCcccccccccccc
Q psy15216 1136 IFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVEEDMLNKAWGLEENSRLSFDAK 1208 (2602)
Q Consensus 1136 ~~~~~~g~~~~~~~~~~~~~~~~~c~g~~~c~tch~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~srl~~d~~ 1208 (2602)
+++...|.+|+++++++|+.+...|++ ..|++||+.|.++-..++.... +..........||+|+++
T Consensus 39 t~~v~~g~tlLdaa~~aGi~ip~~Cr~-G~CgsC~~~v~~G~~~~~~~~~-----l~~~e~~~~g~~L~Cqa~ 105 (128)
T d1doia_ 39 SLEVNEGEYILEAAEAQGYDWPFSCRA-GACANCAAIVLEGDIDMDMQQI-----LSDEEVEDKNVRLTCIGS 105 (128)
T ss_dssp EEECCTTSCHHHHHHHTTCCCCCSSSS-SSSSTTEEEEEESCEEECCCSS-----SCHHHHHTSCEEEGGGEE
T ss_pred EEEECcCChHHHHHHHcCCCCccCCCC-CcCCCCceEeeeCCcccCcccC-----CCHHHHHhCCEEEeeeCE
Confidence 568899999999999999999999987 7999999999988432332221 111111234679999986
|
| >d1frda_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Cyanobacterium (Anabaena sp.), pcc 7119 and 7120 [TaxId: 1167]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: 2Fe-2S ferredoxin-like family: 2Fe-2S ferredoxin-related domain: 2Fe-2S ferredoxin species: Cyanobacterium (Anabaena sp.), pcc 7119 and 7120 [TaxId: 1167]
Probab=96.74 E-value=0.00028 Score=68.05 Aligned_cols=66 Identities=14% Similarity=0.244 Sum_probs=47.0
Q ss_pred hccccCCCchhHHHHhcccchhhhcccccccccCcEEEccCccccCCCCHHHHHHhhcccCcccccccccccc
Q psy15216 1136 IFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVEEDMLNKAWGLEENSRLSFDAK 1208 (2602)
Q Consensus 1136 ~~~~~~g~~~~~~~~~~~~~~~~~c~g~~~c~tch~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~srl~~d~~ 1208 (2602)
+++...|.|||++++++|+.+...|++ ..|.||++.|.++-....+....+.+. ..+..||+|+++
T Consensus 17 ti~v~~g~siLdaa~~~Gi~i~~~C~~-G~CgtC~~~v~~G~~~~~~~~~l~~~~------~~~g~~L~C~~~ 82 (98)
T d1frda_ 17 TIEIDEETTILDGAEENGIELPFSCHS-GSCSSCVGKVVEGEVDQSDQIFLDDEQ------MGKGFALLCVTY 82 (98)
T ss_dssp EEEEETTSCHHHHHHHTTCCCCCSSSS-SSSSTTEEEEEESCEECTTCCSCCHHH------HHTTEEEGGGCE
T ss_pred EEEeCCCChHHHHHHHcCCCEEEecCC-CeeCCCEEEeccCCcccccccccChhh------hcCCeEEeeeCE
Confidence 456778899999999999999999987 479999999998742222211111111 123569999986
|
| >d1wria_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Equisetum arvense [TaxId: 3258]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: 2Fe-2S ferredoxin-like family: 2Fe-2S ferredoxin-related domain: 2Fe-2S ferredoxin species: Equisetum arvense [TaxId: 3258]
Probab=96.62 E-value=0.00093 Score=63.36 Aligned_cols=41 Identities=27% Similarity=0.411 Sum_probs=35.8
Q ss_pred cccccCCCchHHHHHhhcCcccccccccccccCCceEEEcCCC
Q psy15216 2531 AIFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGF 2573 (2602)
Q Consensus 2531 ~~ve~~~g~~~~~~~~~~~~~~~~~c~g~~~c~tch~~~~~~~ 2573 (2602)
++++++.|.++|+++++++ .|...|.+ ..|+||.+.|.+|.
T Consensus 13 ~~~~~~~~~~lLdaa~~~~-~lp~~Cr~-G~CgtC~~~v~~G~ 53 (93)
T d1wria_ 13 ITFDVEPGERLIDIGSEKA-DLPLSCQA-GACSTCLGKIVSGT 53 (93)
T ss_dssp EEEEECTTSCHHHHHHHHS-CCCCSSSS-SSSSTTEEEEEESC
T ss_pred EEEEeCCCCcHHHHHHhCC-CEEEEeCC-cccCcCEeEeecce
Confidence 6788999999999998865 78888976 88999999999884
|
| >d1czpa_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Cyanobacterium (Anabaena sp.), pcc 7119 and 7120 [TaxId: 1167]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: 2Fe-2S ferredoxin-like family: 2Fe-2S ferredoxin-related domain: 2Fe-2S ferredoxin species: Cyanobacterium (Anabaena sp.), pcc 7119 and 7120 [TaxId: 1167]
Probab=96.45 E-value=0.00058 Score=65.54 Aligned_cols=65 Identities=18% Similarity=0.260 Sum_probs=45.4
Q ss_pred ccccCCCchhHHHHhcccchhhhcccccccccCcEEEccCccccCCCCHHHHHHhhcccCcccccccccccc
Q psy15216 1137 FNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGFNEINKANEVEEDMLNKAWGLEENSRLSFDAK 1208 (2602)
Q Consensus 1137 ~~~~~g~~~~~~~~~~~~~~~~~c~g~~~c~tch~~~~~~~~~~~~~~~~e~~~l~~~~~~~~~srl~~d~~ 1208 (2602)
++..+|.+|+++++++|+.+...|++ -.|++|++.|.++--...+....+++. ..+..||+|+.+
T Consensus 18 ~~v~~~~slL~a~~~~Gi~ip~~C~~-G~CgtC~~~v~~G~v~~~~~~~l~~~e------~~~g~~L~C~~~ 82 (98)
T d1czpa_ 18 IEVPDDEYILDAAEEQGYDLPFSCRA-GACSTCAGKLVSGTVDQSDQSFLDDDQ------IEAGYVLTCVAY 82 (98)
T ss_dssp EEEETTSCHHHHHHHTTCCCCCSSSS-SSSSTTEEEEEESCEECTTCCSSCHHH------HHTTEEEGGGCE
T ss_pred EEeCcCChHHHHHHHcCCCeEEecCC-cccCCCeeEEecccccccccccCChhH------hcCCeEEeccCE
Confidence 35566789999999999999999966 699999999998842222222111111 222348999875
|
| >d1a70a_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: 2Fe-2S ferredoxin-like family: 2Fe-2S ferredoxin-related domain: 2Fe-2S ferredoxin species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=96.40 E-value=0.00061 Score=65.34 Aligned_cols=40 Identities=20% Similarity=0.438 Sum_probs=36.1
Q ss_pred hccccCCCchhHHHHhcccchhhhcccccccccCcEEEccC
Q psy15216 1136 IFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREG 1176 (2602)
Q Consensus 1136 ~~~~~~g~~~~~~~~~~~~~~~~~c~g~~~c~tch~~~~~~ 1176 (2602)
.++...|.+||++++++|+.+...|++ ..|+||++.|.+|
T Consensus 15 ~~~~~~g~tlL~a~~~~Gi~i~~~C~~-G~CgtC~~~v~~G 54 (97)
T d1a70a_ 15 EFQCPDDVYILDAAEEEGIDLPYSCRA-GSCSSCAGKLKTG 54 (97)
T ss_dssp EEEEETTSCHHHHHHHTTCCCCCSSSS-SCSSTTEEEEEES
T ss_pred EEEeCCCchHHHHHHHcCCCeeeCCCc-EEcCCCEeEeecC
Confidence 457788999999999999999998965 7899999999987
|
| >d1awda_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Chlorella fusca [TaxId: 3073]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: 2Fe-2S ferredoxin-like family: 2Fe-2S ferredoxin-related domain: 2Fe-2S ferredoxin species: Chlorella fusca [TaxId: 3073]
Probab=96.29 E-value=0.00092 Score=63.61 Aligned_cols=63 Identities=14% Similarity=0.217 Sum_probs=47.3
Q ss_pred hccccCCCchhHHHHhcccchhhhcccccccccCcEEEccCc-cccC--CCCHHHHHHhhcccCcccccccccccc
Q psy15216 1136 IFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGF-NEIN--KANEVEEDMLNKAWGLEENSRLSFDAK 1208 (2602)
Q Consensus 1136 ~~~~~~g~~~~~~~~~~~~~~~~~c~g~~~c~tch~~~~~~~-~~~~--~~~~~e~~~l~~~~~~~~~srl~~d~~ 1208 (2602)
+++...|.||+++++++|+.+...|++ ..|+||++.|.+|- +... ..+++|. .+..+|+|++.
T Consensus 13 ~~~~~~~~slL~aa~~~Gi~i~~~C~~-G~CgtC~~~v~~G~v~~~~~~~l~~~e~---------~~g~~L~C~~~ 78 (94)
T d1awda_ 13 TIECPEDTYILDAAEEAGLDLPYSCRA-GACSSCAGKVESGEVDQSDQSFLDDAQM---------GKGFVLTCVAY 78 (94)
T ss_dssp EEECCTTSCHHHHHHHTTCCCCCSSSS-SSSSTTEEEEEESCEECTTCCSSCHHHH---------HTTEEEGGGCE
T ss_pred EEEeCCCCcHHHHHHHcCCcEEEecCC-CccCCceEEEeeceEcccccccCCHHHH---------hCCcEEEeeCE
Confidence 457788999999999999999999999 79999999999883 2211 1222222 23568999875
|
| >d1iuea_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: 2Fe-2S ferredoxin-like family: 2Fe-2S ferredoxin-related domain: 2Fe-2S ferredoxin species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=96.21 E-value=0.0016 Score=62.50 Aligned_cols=63 Identities=17% Similarity=0.232 Sum_probs=47.2
Q ss_pred hccccCCCchhHHHHhcccchhhhcccccccccCcEEEccCc-ccc--CCCCHHHHHHhhcccCcccccccccccc
Q psy15216 1136 IFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGF-NEI--NKANEVEEDMLNKAWGLEENSRLSFDAK 1208 (2602)
Q Consensus 1136 ~~~~~~g~~~~~~~~~~~~~~~~~c~g~~~c~tch~~~~~~~-~~~--~~~~~~e~~~l~~~~~~~~~srl~~d~~ 1208 (2602)
+++...|.+|+++++++|+.+...|.+ -.|+||++.|.++- +.. +..+++|. .+..||+|++.
T Consensus 15 ~~~~~~getlLda~~~~gi~i~~~C~~-G~CgtC~~~v~~G~v~~~~~~~l~~~e~---------~~g~~L~C~~~ 80 (98)
T d1iuea_ 15 KIECNEDEYILDASERQNVELPYSCRG-GSCSTCAAKLVEGEVDNDDQSYLDEEQI---------KKKYILLCTCY 80 (98)
T ss_dssp EEEEETTSCHHHHHHHTTCCCCCSSCS-SSSSTTEEEEEESCEECTTCCSSCHHHH---------HTTEEEGGGCE
T ss_pred EEEECCCCcHHHHHHHcCCCeEEcCCc-eEcCCCEEEEecCcCccCccccCChhHH---------hcCeEEecCCE
Confidence 467788999999999999999999977 68999999999873 221 11222222 23558999875
|
| >d1frra_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Equisetum arvense [TaxId: 3258]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: 2Fe-2S ferredoxin-like family: 2Fe-2S ferredoxin-related domain: 2Fe-2S ferredoxin species: Equisetum arvense [TaxId: 3258]
Probab=96.09 E-value=0.0012 Score=62.91 Aligned_cols=63 Identities=21% Similarity=0.284 Sum_probs=47.3
Q ss_pred hccccCCCchhHHHHhcccchhhhcccccccccCcEEEccCc-ccc--CCCCHHHHHHhhcccCcccccccccccc
Q psy15216 1136 IFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGF-NEI--NKANEVEEDMLNKAWGLEENSRLSFDAK 1208 (2602)
Q Consensus 1136 ~~~~~~g~~~~~~~~~~~~~~~~~c~g~~~c~tch~~~~~~~-~~~--~~~~~~e~~~l~~~~~~~~~srl~~d~~ 1208 (2602)
+++...|.+|+++++++|+.+...|++ ..|.||++.|.+|- ... +..++.|. .+..||+|++.
T Consensus 14 ~~~~~~g~slLda~~~~Gi~ip~~C~~-G~CgtC~~~v~~G~v~~~~~~~l~~~e~---------~~g~~L~C~~~ 79 (95)
T d1frra_ 14 TLDVPEGTTILDAAEEAGYDLPFSCRA-GACSSCLGKVVSGSVDESEGSFLDDGQM---------EEGFVLTCIAI 79 (95)
T ss_dssp EEEECTTCCHHHHHHHTTCCCCCSSSS-SSSSTTEEEEEESCEECTTCCSCCHHHH---------HTTEEETTTCE
T ss_pred EEEECCCCcHHHHHHHcCCCEEeccCC-cEeCCCEEEEecceEcccccccCCHHHH---------hcCcEEeeeCE
Confidence 467888999999999999999999987 68999999999873 221 11222232 23568999875
|
| >d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin-related protein 2, Arp2 species: Cow (Bos taurus) [TaxId: 9913]
Probab=95.72 E-value=0.0066 Score=66.38 Aligned_cols=145 Identities=17% Similarity=0.235 Sum_probs=81.9
Q ss_pred EEEEeCCceEEEEEEEEECCEEEEEEEecCCCCcchHHHHHHHHHHHHHHhhcc--CCHHHHHHHHHHH---------HH
Q psy15216 821 AVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKK--LSYKDVNILMIKS---------RE 889 (2602)
Q Consensus 821 lV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~~--~~~~~~~~l~~~~---------e~ 889 (2602)
||+|+|.+.+.|+-+- +|.. +........+||.++++.|.+.+.+.-.... .+......+.... +.
T Consensus 2 lVVDiG~~~T~v~PV~--dG~~-l~~a~~~~~igG~~lt~~l~~~l~~~~~~~~~~~~~~~~~~i~~~~~~v~~~~~~e~ 78 (190)
T d1k8kb1 2 VVVDSGDGVTHICPVY--EGFS-LPHLTRRLDIAGRDITRYLIKLLLLRGYAFNHSADFETVRMIKEKLCYVGYNIEQEQ 78 (190)
T ss_dssp CEEEECSSCEEEECEE--TTEE-CSTTCEEESCCHHHHHHHHHHHHHHTTCCCCTTTTHHHHHHHHHHHCCCCSSHHHHH
T ss_pred EEEEcCCCcEEEEEeE--CCEE-cccceEEEeccHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHhhhhhhcccHHHHH
Confidence 6999999999888442 2321 1111122579999999998888765321111 1111111111110 11
Q ss_pred HHHHcccccceEEEEEecCCceEEEEeCHHHHHHHHHHHHHH---------HHHHHHHHHHHcCCCc--cccceEEEecC
Q psy15216 890 IKELLSYQSSVKLNVKLSDKKIVNITIDMKQFFTITQHLVNR---------TILLSSKALMDANLTI--KDINNVILVGG 958 (2602)
Q Consensus 890 ~K~~LS~~~~~~~~i~~~~~~~~~~~itr~~fe~l~~~~~~~---------~~~~i~~~l~~a~~~~--~~i~~V~LvGG 958 (2602)
.+...+... .....+.++.. +.+..+.|. ..+.+|+. +.++|.+++..+..+. .=...|+|+||
T Consensus 79 ~~~~~~~~~--~~~~~lpdg~~--i~i~~er~~-~~E~lF~p~~~~~~~~~l~~~i~~si~~c~~d~r~~L~~NIvl~GG 153 (190)
T d1k8kb1 79 KLALETTVL--VESYTLPDGRI--IKVGGERFE-APEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKHIVLSGG 153 (190)
T ss_dssp HHHHHCSTT--CEEEECTTSCE--EEECTHHHH-TGGGGTCGGGGTCCSCCHHHHHHHHHHHSCTTTHHHHHTTCEEESG
T ss_pred Hhhhcccce--eeeeecCCCcE--EEEChhhcc-ccccccChhhcCcccccHHHHHHHHHHhCCHhHHHHHHcCEEEECc
Confidence 111112111 22334555554 455666654 23334432 6778888888775442 22578999999
Q ss_pred ccchHHHHHHHHhhc
Q psy15216 959 STRMKHIHEGVSNFF 973 (2602)
Q Consensus 959 ~sr~P~v~~~l~~~f 973 (2602)
+|.+|.+.++|++..
T Consensus 154 ~Sl~pGf~~RL~~EL 168 (190)
T d1k8kb1 154 STMYPGLPSRLEREL 168 (190)
T ss_dssp GGCSTTHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHH
Confidence 999999999997654
|
| >d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin-related protein 2, Arp2 species: Cow (Bos taurus) [TaxId: 9913]
Probab=95.19 E-value=0.0042 Score=68.02 Aligned_cols=145 Identities=17% Similarity=0.230 Sum_probs=81.0
Q ss_pred EEEEeCCceEEEEEEEEeCCEEEEEEEecCCCCchhHHHHHHHHHHHHHHhhhcC--ChhHHHHHHHH---------HHH
Q psy15216 2217 AVYDLGGGTFDISILKFKNGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKL--SYKDVNILMIK---------SRE 2285 (2602)
Q Consensus 2217 lV~D~GGGT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~~~--~~~~~~~l~~~---------~e~ 2285 (2602)
||+|+|.+.+.++-+- +|..- ........+||.++++.|.+.+.+....-.. .......+... .+.
T Consensus 2 lVVDiG~~~T~v~PV~--dG~~l-~~a~~~~~igG~~lt~~l~~~l~~~~~~~~~~~~~~~~~~i~~~~~~v~~~~~~e~ 78 (190)
T d1k8kb1 2 VVVDSGDGVTHICPVY--EGFSL-PHLTRRLDIAGRDITRYLIKLLLLRGYAFNHSADFETVRMIKEKLCYVGYNIEQEQ 78 (190)
T ss_dssp CEEEECSSCEEEECEE--TTEEC-STTCEEESCCHHHHHHHHHHHHHHTTCCCCTTTTHHHHHHHHHHHCCCCSSHHHHH
T ss_pred EEEEcCCCcEEEEEeE--CCEEc-ccceEEEeccHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHhhhhhhcccHHHHH
Confidence 6999999999887432 23211 1112235899999999988888753111000 10011111111 011
Q ss_pred HHHHhcccceEEEEEEecCCceEEEEcCHHHHHHHHHHHHH---------HHHHHHHHHHHHcCCCc--cccceEEEEeC
Q psy15216 2286 IKELLSYQSSVKLNVKLSDKKIVNITIDMKQFFTITQHLVN---------RTILLSSKALMDANLTI--KDINNVILVGG 2354 (2602)
Q Consensus 2286 ~K~~ls~~~~~~~~i~~~~~~~~~~~itr~~fe~l~~~~~~---------~~~~~i~~~l~~~~~~~--~~i~~V~LvGG 2354 (2602)
.+...+... .....+.++.. +.+..+.|. ..+.+|+ .+.++|.+++..+..+. .=...|+|+||
T Consensus 79 ~~~~~~~~~--~~~~~lpdg~~--i~i~~er~~-~~E~lF~p~~~~~~~~~l~~~i~~si~~c~~d~r~~L~~NIvl~GG 153 (190)
T d1k8kb1 79 KLALETTVL--VESYTLPDGRI--IKVGGERFE-APEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKHIVLSGG 153 (190)
T ss_dssp HHHHHCSTT--CEEEECTTSCE--EEECTHHHH-TGGGGTCGGGGTCCSCCHHHHHHHHHHHSCTTTHHHHHTTCEEESG
T ss_pred Hhhhcccce--eeeeecCCCcE--EEEChhhcc-ccccccChhhcCcccccHHHHHHHHHHhCCHhHHHHHHcCEEEECc
Confidence 111122222 22334556654 455666553 2233332 26778888888875543 22478999999
Q ss_pred ccchHHHHHHHHhhc
Q psy15216 2355 STRMKHIHEGVSNFF 2369 (2602)
Q Consensus 2355 ~s~~p~v~~~l~~~f 2369 (2602)
+|.+|.+.++|++.+
T Consensus 154 ~Sl~pGf~~RL~~EL 168 (190)
T d1k8kb1 154 STMYPGLPSRLEREL 168 (190)
T ss_dssp GGCSTTHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHH
Confidence 999999999997654
|
| >d2piaa3 d.15.4.2 (A:224-321) Phthalate dioxygenase reductase, C-terminal domain {Pseudomonas cepacia, db01 [TaxId: 292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: 2Fe-2S ferredoxin-like family: 2Fe-2S ferredoxin domains from multidomain proteins domain: Phthalate dioxygenase reductase, C-terminal domain species: Pseudomonas cepacia, db01 [TaxId: 292]
Probab=95.12 E-value=0.0062 Score=58.13 Aligned_cols=63 Identities=14% Similarity=0.327 Sum_probs=45.9
Q ss_pred hccccCCCchhHHHHhcccchhhhcccccccccCcEEEccCc-cccCCCCHHHHHHhhcccCcccccccccccc
Q psy15216 1136 IFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGF-NEINKANEVEEDMLNKAWGLEENSRLSFDAK 1208 (2602)
Q Consensus 1136 ~~~~~~g~~~~~~~~~~~~~~~~~c~g~~~c~tch~~~~~~~-~~~~~~~~~e~~~l~~~~~~~~~srl~~d~~ 1208 (2602)
+++...|.|||++++++|+.+...|.. -.|.+|++.|.+|- +.-+. ++.. +.+...+|+|++.
T Consensus 25 ~~~v~~~~slL~aa~~~Gi~ip~~C~~-G~CgtC~~~v~~G~v~~~~~-------~~~~--~~~~~~~L~C~s~ 88 (98)
T d2piaa3 25 SFEIPANRSILEVLRDANVRVPSSCES-GTCGSCKTALCSGEADHRDM-------VLRD--DEKGTQIMVCVSR 88 (98)
T ss_dssp EEEECTTSCHHHHHHHTTCCCCCSCSS-SSSCTTEEEEEESCEECCCS-------SCCT--TTTTTEEETTTCE
T ss_pred EEEECcCCcHHHHHHhcCCcccccCCc-cEeCCCEEEEEeeceecCCC-------CCCh--HHhCCcEEEeeCE
Confidence 467778999999999999999999976 58999999999873 21111 1111 1134668999875
|
| >d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Long alpha-hairpin superfamily: Chaperone J-domain family: Chaperone J-domain domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.75 E-value=0.013 Score=55.34 Aligned_cols=53 Identities=17% Similarity=0.164 Sum_probs=43.5
Q ss_pred cCccccccccccc-cchhhhHHHHHHHHHHHHHHHhhcChhhHHHHHHHhcCCC
Q psy15216 1927 EKDLLYFNDNFIQ-KSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKLNGID 1979 (2602)
Q Consensus 1927 ~~s~~~l~~~~~~-~~~~~~~~~~~~~~~~n~ay~~l~~p~~r~~y~l~~~g~~ 1979 (2602)
..++.||+|+... .....+..+.+.-.+||+||.+|+||-+|.+|=+++.|-+
T Consensus 39 ~l~~~~HPDk~~~~~~~~~~~~a~~~f~~I~~Ay~vL~d~~~R~~YD~~~~~~~ 92 (94)
T d1wjza_ 39 KLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRSGPS 92 (94)
T ss_dssp HTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSCCSC
T ss_pred HHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHccCCCC
Confidence 5688999997543 4556667788888899999999999999999988887653
|
| >d2p2ea1 b.124.1.1 (A:3-120) Putative Fe-S biosynthesis protein LSL1730 {Lactobacillus salivarius [TaxId: 1624]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: HesB-like domain superfamily: HesB-like domain family: HesB-like domain domain: Putative Fe-S biosynthesis protein LSL1730 species: Lactobacillus salivarius [TaxId: 1624]
Probab=92.72 E-value=0.03 Score=54.72 Aligned_cols=79 Identities=23% Similarity=0.307 Sum_probs=59.6
Q ss_pred hhhccHHHHHHHHHHHHhcCCCceEEEEE--------eccCCC-cceeeeeeccc----cCCCCeEEEeCCEEEEEecCc
Q psy15216 1863 EELVTKKAAKYINKYIQKRGKGIGLRLGV--------YNRGCS-GLSYKLEYVDE----KRKEDQVFKLNGVQIFINEKD 1929 (2602)
Q Consensus 1863 ~~l~t~~A~~~i~~~~~~~~~~~~lr~~v--------~~~GC~-G~~Y~~~~~~~----~~~~D~~~~~~~~~v~vd~~s 1929 (2602)
.+++|++|+++|++.+...++ .|.+.. +++||+ |=.|.+-++++ ..+-|..++.+-.+|++.+..
T Consensus 2 ~ItiT~~A~~~L~~~~~~~~~--~L~L~~dDG~g~yS~gggC~i~g~f~L~~v~~~~~~~~~yd~~iesn~g~i~~~~~~ 79 (118)
T d2p2ea1 2 KITVTDDAAKKLQRYTDDSNA--VLLLDFDDGVGALSKVGVCSLNSDFRILVVSKDMDYKKDYNEVIDSNIGKFYYKGYS 79 (118)
T ss_dssp EEEECHHHHHHHHHHHTCTTE--EEEEEECSSCSGGGGSSCCCCSCCEEEEEEETTSSCTTTSCEEEEETTSCEEECGGG
T ss_pred EEEECHHHHHHHHHhhCCCCC--EEEEEEeCCCCccccCCccccCCEEEEEEEeCCCCCCcccceeecCCCccEEEcccc
Confidence 457999999999998864432 244443 578998 66888888764 235688999887799999999
Q ss_pred ccccccc-ccccchh
Q psy15216 1930 LLYFNDN-FIQKSKI 1943 (2602)
Q Consensus 1930 ~~~l~~~-~~~~~~~ 1943 (2602)
..|+.+. .+|+.+.
T Consensus 80 ~~ffd~~m~ld~~~~ 94 (118)
T d2p2ea1 80 KMYMDDNMKISLNTN 94 (118)
T ss_dssp GGGSCSEEEEEECSS
T ss_pred hhhcCCCcEEEEcCC
Confidence 9999876 6666554
|
| >d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Long alpha-hairpin superfamily: Chaperone J-domain family: Chaperone J-domain domain: DnaJ chaperone, N-terminal (J) domain species: Escherichia coli [TaxId: 562]
Probab=92.53 E-value=0.028 Score=50.49 Aligned_cols=40 Identities=20% Similarity=0.264 Sum_probs=30.5
Q ss_pred CccccccccccccchhhhHHHHHHHHHHHHHHHhhcChhhHHHHH
Q psy15216 1928 KDLLYFNDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYL 1972 (2602)
Q Consensus 1928 ~s~~~l~~~~~~~~~~~~~~~~~~~~~~n~ay~~l~~p~~r~~y~ 1972 (2602)
.++.|++|+..+-.+.+ ..-..||+||.+|+||-+|+.|=
T Consensus 27 l~~~~HPDk~~~~~~~~-----~~f~~i~~Ay~vL~d~~~R~~YD 66 (75)
T d1xbla_ 27 LAMKYHPDRNQGDKEAE-----AKFKEIKEAYEVLTDSQKRAAYD 66 (75)
T ss_dssp HHHHTCCTTCTTTCHHH-----HHHHHHHHHHHHTTSSHHHHHHH
T ss_pred HHhhhhhhccCCChHHH-----HHHHHHHHHHHhcCCHHHHHHHH
Confidence 35678898866544333 34568999999999999999994
|
| >d2i7na2 c.55.1.14 (A:382-593) Pantothenate kinase 1, PANK1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Fumble-like domain: Pantothenate kinase 1, PANK1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.37 E-value=0.17 Score=55.12 Aligned_cols=157 Identities=15% Similarity=0.187 Sum_probs=82.4
Q ss_pred eEEEEEeCCceEEEEEEEEe-CCEEEEEEEecCCCCchhHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHH------
Q psy15216 2215 IFAVYDLGGGTFDISILKFK-NGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIK------ 2287 (2602)
Q Consensus 2215 ~vlV~D~GGGT~Dvsv~~~~-~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~l~~~~e~~K------ 2287 (2602)
.+|++-+|+|| +++.++ .+.++.+.... .||..||-. ...+.. ......+.+.+++-.
T Consensus 28 P~llv~iGsGt---sii~v~~~~~~~~iggT~---~gGgtf~gl-a~lLlg--------~~~~~eI~klA~~G~~~~~dl 92 (212)
T d2i7na2 28 PMLLVNMGSGV---SILAVYSKDNYKRVTGTS---LGGGTFLGL-CCLLTG--------CETFEEALEMAAKGDSTNVDK 92 (212)
T ss_dssp SEEEEEESSSE---EEEEEEETTEEEEEEEES---CSHHHHHHH-HHHHHC--------CCSHHHHHHHHHHCCGGGTSE
T ss_pred CEEEEECCCCe---EEEEEecCCceEEecCCc---ccHHHHHHH-HHHhcC--------CCCHHHHHHHHhcCCccccCc
Confidence 48999999996 466765 57888887765 999999843 333321 112222222232211
Q ss_pred ---HHh----c--ccceEEEEEEecCC--ceEEEEcCHHHHHHHHHH-HHHHHHHHHHHHHHHcCCCccccceEEEEeCc
Q psy15216 2288 ---ELL----S--YQSSVKLNVKLSDK--KIVNITIDMKQFFTITQH-LVNRTILLSSKALMDANLTIKDINNVILVGGS 2355 (2602)
Q Consensus 2288 ---~~l----s--~~~~~~~~i~~~~~--~~~~~~itr~~fe~l~~~-~~~~~~~~i~~~l~~~~~~~~~i~~V~LvGG~ 2355 (2602)
..- | .-....+...+..- ....-.++++++-.-++. +.+-+...+..+.+.. .++.|+++||.
T Consensus 93 ~~~di~~~~~s~sgL~t~~~a~~fgk~~~~~~~~~~~~~DiaaS~q~~v~~~l~~~a~~aa~~~-----~~k~iv~~Ggv 167 (212)
T d2i7na2 93 LVKDIYGGDYERFGLQGSAVASSFGNMMSKEKRDSISKEDLARATLVTITNNIGSIARMCALNE-----NIDRVVFVGNF 167 (212)
T ss_dssp EHHHHHSSCBGGGTBCTTSEEETTTTTTSHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-----TCCCEEEESGG
T ss_pred cCCCcCCCCCCcccCCHHHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCCEEEEECcH
Confidence 000 0 01111111100000 000012334444332222 2233334444444443 46789999998
Q ss_pred cchHHHHHHHHh----hc---CCcccCCCCccchhhhHHHHHh
Q psy15216 2356 TRMKHIHEGVSN----FF---KTTLLTSIDPDKAVVFGAAIQA 2391 (2602)
Q Consensus 2356 s~~p~v~~~l~~----~f---~~~~~~~~~p~~aVa~GAa~~a 2391 (2602)
+..-.+++.+.+ ++ +.++..+.+...+.|.||.+.-
T Consensus 168 ~aN~~lr~~l~~~~~~~~~~~~i~~~Fp~~~~y~galGA~l~~ 210 (212)
T d2i7na2 168 LRINMVSMKLLAYAMDFWSKGQLKALFLEHEGYFGAVGALLEL 210 (212)
T ss_dssp GCSSSHHHHHHHHHHHHHTTTSCCEEEETTTTCHHHHHHHHHH
T ss_pred hhCHHHHHHHHHHHHHHHhhCCceEEecCChhhhHHHHHHHHh
Confidence 877767666543 33 4567778899999999998753
|
| >d1r59o2 c.55.1.4 (O:257-491) Glycerol kinase {Enterococcus casseliflavus [TaxId: 37734]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Glycerol kinase domain: Glycerol kinase species: Enterococcus casseliflavus [TaxId: 37734]
Probab=92.33 E-value=0.066 Score=60.01 Aligned_cols=79 Identities=15% Similarity=0.243 Sum_probs=57.0
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHH----HcCCCccccceEEEEeCccchHHHHHHHHhhcCCcccCCCCccchhhhHH
Q psy15216 2312 IDMKQFFTITQHLVNRTILLSSKALM----DANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGA 2387 (2602)
Q Consensus 2312 itr~~fe~l~~~~~~~~~~~i~~~l~----~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~aVa~GA 2387 (2602)
-+|.++ ++.+++.+.-.++..++ ..+. .++.|.+.||.++.|.+.+.+.+.++.++..+.++ ++.++||
T Consensus 116 ~~~~~l---~rAvlEgiaf~~~~~~e~~~~~~g~---~~~~i~~~GG~s~s~~~~Qi~Advlg~~v~~~~~~-e~~alGa 188 (235)
T d1r59o2 116 TTKEDF---VRATLQAVAYQSKDVIDTMKKDSGI---DIPLLKVDGGAAKNDLLMQFQADILDIDVQRAANL-ETTALGA 188 (235)
T ss_dssp CCHHHH---HHHHHHHHHHHHHHHHHHHHHHHCC---CCSEEEEEESTTSCHHHHHHHHHHHSSEEEEESCC-CTTTHHH
T ss_pred CCHHHH---HHHHHHHHHHHHHHHHHHHHHhcCC---CCcEEEecCcchhCHHHHhhhhhccceeeeecccc-chHHHHH
Confidence 345544 44444444433333333 3443 46789999999999999999999999998887666 5899999
Q ss_pred HHHhHHhcCC
Q psy15216 2388 AIQANFLSGN 2397 (2602)
Q Consensus 2388 a~~a~~~~~~ 2397 (2602)
|+.|+.-.+.
T Consensus 189 A~la~~~~G~ 198 (235)
T d1r59o2 189 AYLAGLAVGF 198 (235)
T ss_dssp HHHHHHHHTS
T ss_pred HHHHHHHcCC
Confidence 9999876654
|
| >d1e4ft1 c.55.1.1 (T:7-199) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Cell division protein FtsA species: Thermotoga maritima [TaxId: 2336]
Probab=92.11 E-value=0.28 Score=53.02 Aligned_cols=32 Identities=13% Similarity=-0.122 Sum_probs=29.1
Q ss_pred CHHHHHHHHHHHHHcCCceEEEechhHHHHHH
Q psy15216 777 NDIQRQFTKNAAKLAGLNVLRLLNEPTSAAIA 808 (2602)
Q Consensus 777 ~~~qr~~~~~Aa~~AGl~~~~li~EPtAAAl~ 808 (2602)
+....+.++++.+.+|+++..++.+|.|+|.+
T Consensus 160 ~~~~i~nl~~~~~~~~l~v~~~~~~~~asa~a 191 (193)
T d1e4ft1 160 PLKVYEMFYNFLQDTVKSPFQLKSSLVSTAEG 191 (193)
T ss_dssp EHHHHHHHHHHHHHHSCSCEEEEEHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCcchhEEEhHHhhhhc
Confidence 35788999999999999999999999999975
|
| >d1r59o2 c.55.1.4 (O:257-491) Glycerol kinase {Enterococcus casseliflavus [TaxId: 37734]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Glycerol kinase domain: Glycerol kinase species: Enterococcus casseliflavus [TaxId: 37734]
Probab=91.86 E-value=0.089 Score=58.90 Aligned_cols=80 Identities=15% Similarity=0.233 Sum_probs=58.2
Q ss_pred eCHHHHHHHHHHHHHHHHHHHHHHHH----HcCCCccccceEEEecCccchHHHHHHHHhhccCcccCcCCcchHhHHHH
Q psy15216 916 IDMKQFFTITQHLVNRTILLSSKALM----DANLTIKDINNVILVGGSTRMKHIHEGVSNFFKTTLLTSIDPDKAVVFGA 991 (2602)
Q Consensus 916 itr~~fe~l~~~~~~~~~~~i~~~l~----~a~~~~~~i~~V~LvGG~sr~P~v~~~l~~~f~~~~~~~~~p~~aVa~GA 991 (2602)
-+|.++ ++.+++.+.-.++..++ ..+. .++.|.+.||.++.|.+.+.+.+.++.++..+.++ ++.++||
T Consensus 116 ~~~~~l---~rAvlEgiaf~~~~~~e~~~~~~g~---~~~~i~~~GG~s~s~~~~Qi~Advlg~~v~~~~~~-e~~alGa 188 (235)
T d1r59o2 116 TTKEDF---VRATLQAVAYQSKDVIDTMKKDSGI---DIPLLKVDGGAAKNDLLMQFQADILDIDVQRAANL-ETTALGA 188 (235)
T ss_dssp CCHHHH---HHHHHHHHHHHHHHHHHHHHHHHCC---CCSEEEEEESTTSCHHHHHHHHHHHSSEEEEESCC-CTTTHHH
T ss_pred CCHHHH---HHHHHHHHHHHHHHHHHHHHHhcCC---CCcEEEecCcchhCHHHHhhhhhccceeeeecccc-chHHHHH
Confidence 355554 44445554444333333 3343 57789999999999999999999999998877665 5889999
Q ss_pred HHHhHHhcCCC
Q psy15216 992 AIQANFLSGNR 1002 (2602)
Q Consensus 992 a~~a~~l~~~~ 1002 (2602)
|+.|+.-.+..
T Consensus 189 A~la~~~~G~~ 199 (235)
T d1r59o2 189 AYLAGLAVGFW 199 (235)
T ss_dssp HHHHHHHHTSS
T ss_pred HHHHHHHcCCC
Confidence 99998877654
|
| >d2p2ea1 b.124.1.1 (A:3-120) Putative Fe-S biosynthesis protein LSL1730 {Lactobacillus salivarius [TaxId: 1624]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: HesB-like domain superfamily: HesB-like domain family: HesB-like domain domain: Putative Fe-S biosynthesis protein LSL1730 species: Lactobacillus salivarius [TaxId: 1624]
Probab=91.75 E-value=0.059 Score=52.59 Aligned_cols=82 Identities=22% Similarity=0.280 Sum_probs=61.3
Q ss_pred hhccHHHHHHHHHHHHhcCCCeeEEEEE--------eccccC-ceeeeeeeccc----cCCCCEEEEeCCEEEEEeCCcc
Q psy15216 468 ELVTKKAAKYINKYIQKRGKGIGLRLGV--------YNRGCS-GLSYKLEYVDE----KRKEDQVFKLNGVQIFINEKDL 534 (2602)
Q Consensus 468 ~l~t~~A~~~~~~~~~~~~~~~~lr~~v--------~~~GCs-g~~y~~~~~~~----~~~~D~~~~~~~~~v~vd~~s~ 534 (2602)
+++|+.|+++|++.+...++ .|.+.. ++|||+ |=.|.+-++++ ..+-|..++.+-.+|++.+.+.
T Consensus 3 ItiT~~A~~~L~~~~~~~~~--~L~L~~dDG~g~yS~gggC~i~g~f~L~~v~~~~~~~~~yd~~iesn~g~i~~~~~~~ 80 (118)
T d2p2ea1 3 ITVTDDAAKKLQRYTDDSNA--VLLLDFDDGVGALSKVGVCSLNSDFRILVVSKDMDYKKDYNEVIDSNIGKFYYKGYSK 80 (118)
T ss_dssp EEECHHHHHHHHHHHTCTTE--EEEEEECSSCSGGGGSSCCCCSCCEEEEEEETTSSCTTTSCEEEEETTSCEEECGGGG
T ss_pred EEECHHHHHHHHHhhCCCCC--EEEEEEeCCCCccccCCccccCCEEEEEEEeCCCCCCcccceeecCCCccEEEcccch
Confidence 46899999999998865432 255544 578998 55788888764 2356899998888999999999
Q ss_pred chhhhc-ccccccccchh
Q psy15216 535 LYFNDN-FIQKSKIDQDA 551 (2602)
Q Consensus 535 ~~l~d~-~~~~~~~~~~~ 551 (2602)
.|+.+. .+|+.+....+
T Consensus 81 ~ffd~~m~ld~~~~~~~l 98 (118)
T d2p2ea1 81 MYMDDNMKISLNTNNSLL 98 (118)
T ss_dssp GGSCSEEEEEECSSSSCE
T ss_pred hhcCCCcEEEEcCCCCEE
Confidence 999887 56766554433
|
| >d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Long alpha-hairpin superfamily: Chaperone J-domain family: Chaperone J-domain domain: Auxilin J-domain species: Cow (Bos taurus) [TaxId: 9913]
Probab=91.66 E-value=0.013 Score=55.54 Aligned_cols=50 Identities=16% Similarity=0.171 Sum_probs=38.3
Q ss_pred CEEEEEecCccccccccccccchhhhHHHHHHHHHHHHHHHhhcChhhHHHH
Q psy15216 1920 GVQIFINEKDLLYFNDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIY 1971 (2602)
Q Consensus 1920 ~~~v~vd~~s~~~l~~~~~~~~~~~~~~~~~~~~~~n~ay~~l~~p~~r~~y 1971 (2602)
.|+-.--..++.||+|+..+.. ++..|.+.-..||+||.+|+||-+|++|
T Consensus 49 eIk~aYr~l~~~~HPDk~~~~~--~~~~a~~~f~~I~~Ay~~L~d~~~R~~Y 98 (98)
T d1nz6a_ 49 QVKKVYRKAVLVVHPDKATGQP--YEQYAKMIFMELNDAWSEFENQGQKPLY 98 (98)
T ss_dssp HHHHHHHHHHHHSCHHHHTTST--THHHHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred HHHHHHHHHHHHhccccCCChH--HHHHHHHHHHHHHHHHHHHCCHHHHhcC
Confidence 3444445567899999976544 3455666778999999999999999987
|
| >d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Long alpha-hairpin superfamily: Chaperone J-domain family: Chaperone J-domain domain: HSP40 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.43 E-value=0.051 Score=49.09 Aligned_cols=40 Identities=25% Similarity=0.330 Sum_probs=31.3
Q ss_pred CccccccccccccchhhhHHHHHHHHHHHHHHHhhcChhhHHHHHH
Q psy15216 1928 KDLLYFNDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLC 1973 (2602)
Q Consensus 1928 ~s~~~l~~~~~~~~~~~~~~~~~~~~~~n~ay~~l~~p~~r~~y~l 1973 (2602)
.+..|++|++.+... .++-..|++||.+|+||.+|+.|--
T Consensus 27 l~~~~hPD~~~~~~~------~~~~~~i~~Ay~vLsdp~~R~~YD~ 66 (77)
T d1hdja_ 27 QALRYHPDKNKEPGA------EEKFKEIAEAYDVLSDPRKREIFDR 66 (77)
T ss_dssp HHHTTCTTTCCCTTH------HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHhccccccchhH------HHHHHHHHHHHHHhcCHHHHHHHHh
Confidence 356788998765543 3345799999999999999999963
|
| >d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Long alpha-hairpin superfamily: Chaperone J-domain family: Chaperone J-domain domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.10 E-value=0.053 Score=50.95 Aligned_cols=53 Identities=17% Similarity=0.165 Sum_probs=40.3
Q ss_pred eCCccchhhhcccc-cccccchhhhHHhhhhHHHHHhhcCchhHHHHHHHHcCc
Q psy15216 530 NEKDLLYFNDNFIQ-KSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKLNGI 582 (2602)
Q Consensus 530 d~~s~~~l~d~~~~-~~~~~~~~~~~~~~~~n~ay~~l~~p~~ra~yll~~~g~ 582 (2602)
-..++.|..|+... .....+..+.+.-.+||+||++|+||.+|.+|=+.+.|-
T Consensus 38 ~~l~~~~HPDk~~~~~~~~~~~~a~~~f~~I~~Ay~vL~d~~~R~~YD~~~~~~ 91 (94)
T d1wjza_ 38 QKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRSGP 91 (94)
T ss_dssp HHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSCCS
T ss_pred HHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHccCCC
Confidence 34567777786543 344455667788889999999999999999997776654
|
| >d2i7na2 c.55.1.14 (A:382-593) Pantothenate kinase 1, PANK1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Fumble-like domain: Pantothenate kinase 1, PANK1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.96 E-value=0.38 Score=52.34 Aligned_cols=160 Identities=16% Similarity=0.185 Sum_probs=84.7
Q ss_pred eEEEEEeCCceEEEEEEEEE-CCEEEEEEEecCCCCcchHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHH----
Q psy15216 819 IFAVYDLGGGTFDISILKFK-NGVFKVLSVGGDSNLGGDDFDYCLFSWIVKNAFLKKLSYKDVNILMIKSREIKEL---- 893 (2602)
Q Consensus 819 ~vlV~D~GGGT~Dvsv~~~~-~~~~~v~~~~g~~~lGG~~~D~~l~~~l~~~~~~~~~~~~~~~~l~~~~e~~K~~---- 893 (2602)
.+|++.+|+|| +++.++ .+.++.+.... .||..||- +...+.. ..+...+.+|-..-...+..
T Consensus 28 P~llv~iGsGt---sii~v~~~~~~~~iggT~---~gGgtf~g-la~lLlg-----~~~~~eI~klA~~G~~~~~dl~~~ 95 (212)
T d2i7na2 28 PMLLVNMGSGV---SILAVYSKDNYKRVTGTS---LGGGTFLG-LCCLLTG-----CETFEEALEMAAKGDSTNVDKLVK 95 (212)
T ss_dssp SEEEEEESSSE---EEEEEEETTEEEEEEEES---CSHHHHHH-HHHHHHC-----CCSHHHHHHHHHHCCGGGTSEEHH
T ss_pred CEEEEECCCCe---EEEEEecCCceEEecCCc---ccHHHHHH-HHHHhcC-----CCCHHHHHHHHhcCCccccCccCC
Confidence 58999999996 477765 57888888776 99999984 3333321 12323322221111000000
Q ss_pred --------cccccceEEEEEecC--CceEEEEeCHHHHHHHHHH-HHHHHHHHHHHHHHHcCCCccccceEEEecCccch
Q psy15216 894 --------LSYQSSVKLNVKLSD--KKIVNITIDMKQFFTITQH-LVNRTILLSSKALMDANLTIKDINNVILVGGSTRM 962 (2602)
Q Consensus 894 --------LS~~~~~~~~i~~~~--~~~~~~~itr~~fe~l~~~-~~~~~~~~i~~~l~~a~~~~~~i~~V~LvGG~sr~ 962 (2602)
++.-....+...+.. .....-.++++++-.-++. +.+-+...+..+.+.. .++.|+++||.+..
T Consensus 96 di~~~~~s~sgL~t~~~a~~fgk~~~~~~~~~~~~~DiaaS~q~~v~~~l~~~a~~aa~~~-----~~k~iv~~Ggv~aN 170 (212)
T d2i7na2 96 DIYGGDYERFGLQGSAVASSFGNMMSKEKRDSISKEDLARATLVTITNNIGSIARMCALNE-----NIDRVVFVGNFLRI 170 (212)
T ss_dssp HHHSSCBGGGTBCTTSEEETTTTTTSHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-----TCCCEEEESGGGCS
T ss_pred CcCCCCCCcccCCHHHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCCEEEEECcHhhC
Confidence 000111111111000 0000112344444332222 2233333444444433 57889999998888
Q ss_pred HHHHHHHHh----hc---cCcccCcCCcchHhHHHHHHHh
Q psy15216 963 KHIHEGVSN----FF---KTTLLTSIDPDKAVVFGAAIQA 995 (2602)
Q Consensus 963 P~v~~~l~~----~f---~~~~~~~~~p~~aVa~GAa~~a 995 (2602)
-.+++.+.+ ++ +.++..+.|...+.|.||.+.-
T Consensus 171 ~~lr~~l~~~~~~~~~~~~i~~~Fp~~~~y~galGA~l~~ 210 (212)
T d2i7na2 171 NMVSMKLLAYAMDFWSKGQLKALFLEHEGYFGAVGALLEL 210 (212)
T ss_dssp SSHHHHHHHHHHHHHTTTSCCEEEETTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCceEEecCChhhhHHHHHHHHh
Confidence 777776643 34 4566677899999999998753
|
| >d2fxua1 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin species: Cow (Bos taurus) [TaxId: 9913]
Probab=89.82 E-value=0.71 Score=46.68 Aligned_cols=127 Identities=15% Similarity=0.156 Sum_probs=78.4
Q ss_pred EEEEcCcccEEEEEEECCeeEEEeCCCCCccccEEEEEecC---------CcEEEcHHHHhhhccCCCCchhhhhhhhCC
Q psy15216 640 IGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPD---------GKIYVGKKAKITQNIDPKNTISSIKRFIAR 710 (2602)
Q Consensus 640 vGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~v~~~~~---------~~~~vG~~A~~~~~~~p~~~~~~~K~~lg~ 710 (2602)
|-||+|+.++++++.-+..|.++ +||++..... ....+|+.|..... . ..+
T Consensus 2 vViD~Gs~~~k~G~age~~P~~~--------~ps~~g~~~~~~~~~~~~~~~~~igd~~~~~~~---~---~~~------ 61 (140)
T d2fxua1 2 LVCDNGSGLVKAGFAGDDAPRAV--------FPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG---I---LTL------ 61 (140)
T ss_dssp EEEEECSSEEEEEETTCSSCSEE--------EECCEEEECTTTC-------CCEEHHHHHHHTT---S---EEE------
T ss_pred EEEECCCCeEEEeeCCCCCcceE--------eccceeeecccccccCccccceeeChhHhhccc---c---ccc------
Confidence 67999999999999876666433 3444443221 12355655532110 0 000
Q ss_pred CCCCCCCCCCCeeeecCCCceEEEEeCceeCHHHHHHHHHHHHHHHHHHhhcCccc--eEEEEEcCCCCHHHHHHHHHHH
Q psy15216 711 DLKNINTNSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRIF--GAVITVPAYFNDIQRQFTKNAA 788 (2602)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~--~~ViTVPa~f~~~qr~~~~~Aa 788 (2602)
..|+ ..+.+.-.+....++.++.. ..++..+. .+++|-|..-...+|+.+-+.+
T Consensus 62 --------~~p~-------------~~g~v~dwd~~e~~~~~~~~---~~l~~~~~~~pvlltE~~~~~~~~r~~~~Eil 117 (140)
T d2fxua1 62 --------KYPI-------------EHGIITNWDDMEKIWHHTFY---NELRVAPEEHPTLLTEAPLNPKANREKMTQIM 117 (140)
T ss_dssp --------ECSE-------------ETTEECCHHHHHHHHHHHHH---TTSCCCGGGSCEEEEECTTCCHHHHHHHHHHH
T ss_pred --------cCcC-------------cCCcccCHHHHHHHHHHhhh---hhcccCCCCCcceeeccCCCCHHHHHHHHHHh
Confidence 0111 12233334555556555543 34444443 4999999999999999888766
Q ss_pred -HHcCCceEEEechhHHHHHHhh
Q psy15216 789 -KLAGLNVLRLLNEPTSAAIAYK 810 (2602)
Q Consensus 789 -~~AGl~~~~li~EPtAAAl~y~ 810 (2602)
+..++..+.+...|..+++++|
T Consensus 118 FE~~~vp~~~~~~~~~ls~ys~G 140 (140)
T d2fxua1 118 FETFNVPAMYVAIQAVLSLYASG 140 (140)
T ss_dssp HHTTCCSEEEEEEHHHHHHHHTT
T ss_pred hccCCCCEEEEEhhHHhHhhcCC
Confidence 4568899999999999987654
|
| >d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Long alpha-hairpin superfamily: Chaperone J-domain family: Chaperone J-domain domain: DnaJ chaperone, N-terminal (J) domain species: Escherichia coli [TaxId: 562]
Probab=88.68 E-value=0.071 Score=47.77 Aligned_cols=44 Identities=20% Similarity=0.278 Sum_probs=30.9
Q ss_pred ccchhhhcccccccccchhhhHHhhhhHHHHHhhcCchhHHHHHHHHcCcc
Q psy15216 533 DLLYFNDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKLNGID 583 (2602)
Q Consensus 533 s~~~l~d~~~~~~~~~~~~~~~~~~~~n~ay~~l~~p~~ra~yll~~~g~~ 583 (2602)
++.|..|+..+..+ +.+.-..||+||.+|+||.+|+.| ...|..
T Consensus 28 ~~~~HPDk~~~~~~-----~~~~f~~i~~Ay~vL~d~~~R~~Y--D~~g~~ 71 (75)
T d1xbla_ 28 AMKYHPDRNQGDKE-----AEAKFKEIKEAYEVLTDSQKRAAY--DQYGHA 71 (75)
T ss_dssp HHHTCCTTCTTTCH-----HHHHHHHHHHHHHHTTSSHHHHHH--HHHTTS
T ss_pred HhhhhhhccCCChH-----HHHHHHHHHHHHHhcCCHHHHHHH--HHhCcc
Confidence 44566666544322 345577899999999999999999 445543
|
| >d1k8ka1 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin-related protein 3, Arp3 species: Cow (Bos taurus) [TaxId: 9913]
Probab=88.23 E-value=1 Score=46.52 Aligned_cols=148 Identities=16% Similarity=0.160 Sum_probs=79.3
Q ss_pred eEEEEEcCcccEEEEEEECCeeEEEeCCCCCccccEEEEEecCCcEEEcHHHHhhhccCCCCchhhhhhhhCCCCCCCCC
Q psy15216 638 VSIGIDFGTTNSLVAIVRNNIPEVLKDKYGYFLIPSIVRYLPDGKIYVGKKAKITQNIDPKNTISSIKRFIARDLKNINT 717 (2602)
Q Consensus 638 ~vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~v~~~~~~~~~vG~~A~~~~~~~p~~~~~~~K~~lg~~~~~~~~ 717 (2602)
..|-||+|+.++++++.-+..|..+ +||+|....+. .+|.......... ......++|....+ .
T Consensus 4 PavViD~GS~~~KaG~age~~P~~i--------~Ps~vg~~~~~--~~~~~~~~~~~~~----~~~~~~~ig~e~~~--~ 67 (158)
T d1k8ka1 4 PACVVDCGTGYTKLGYAGNTEPQFI--------IPSCIAIKESA--KVGDQAQRRVMKG----VDDLDFFIGDEAIE--K 67 (158)
T ss_dssp CCEEEEECSSEEEEEETTCSSCSEE--------EESCEEECC-------------CCCT----TGGGCEEEGGGGTS--C
T ss_pred CcEEEECCCCeEEEEECCCCCCCEE--------eccceeecccc--cccCchhcccccC----CCccceecChhhhh--C
Confidence 3488999999999999766666433 57777654321 2232221111100 00011112211100 0
Q ss_pred CCCCeeeecCCCceEEEEeCceeCHHHHHHHHHHHHHHHHHHhhcCcc--ceEEEEEcCCCCHHHHHHHHHHH-HHcCCc
Q psy15216 718 NSFPYDFQNKFGMLHIKTISGIKSPIEISAQIFITLKKIAENAVNNRI--FGAVITVPAYFNDIQRQFTKNAA-KLAGLN 794 (2602)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~--~~~ViTVPa~f~~~qr~~~~~Aa-~~AGl~ 794 (2602)
..+.+. .....+.+.-.+....++.++. .+.+..+. ..++||-|...+..+|+.+-+.. +..++.
T Consensus 68 --~~~~~~-------~pi~~G~i~dwd~~e~l~~~~~---~~~l~v~~~~~pvlltEp~~~~~~~Re~~~EilFE~~~vp 135 (158)
T d1k8ka1 68 --PTYATK-------WPIRHGIVEDWDLMERFMEQVI---FKYLRAEPEDHYFLLTEPPLNTPENREYTAEIMFESFNVP 135 (158)
T ss_dssp --TTSEEE-------CCEETTEESCHHHHHHHHHHHH---HTTTCCCGGGCCEEEEECTTCCHHHHHHHHHHHHHTSCCS
T ss_pred --CCcccc-------ccccCCeEecHHHHHHHHHHHH---HHhcccCCCCCceeeeecCCCCHHHHHHHHHHHhhhcCCC
Confidence 001111 1112233444455555555443 23344333 35999999999999999777655 556888
Q ss_pred eEEEechhHHHHHHhhhcc
Q psy15216 795 VLRLLNEPTSAAIAYKLDK 813 (2602)
Q Consensus 795 ~~~li~EPtAAAl~y~~~~ 813 (2602)
-+.+...|..++++++...
T Consensus 136 a~~~~~~~~Lslya~g~~~ 154 (158)
T d1k8ka1 136 GLYIAVQAVLALAASWTSR 154 (158)
T ss_dssp EEEEEEHHHHHHHHGGGST
T ss_pred EEEEEchhhhhheeCCCCC
Confidence 9999999999998876544
|
| >d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Long alpha-hairpin superfamily: Chaperone J-domain family: Chaperone J-domain domain: HSP40 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.15 E-value=0.12 Score=46.53 Aligned_cols=43 Identities=26% Similarity=0.347 Sum_probs=31.1
Q ss_pred ccchhhhcccccccccchhhhHHhhhhHHHHHhhcCchhHHHHHHHHcCcc
Q psy15216 533 DLLYFNDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCKLNGID 583 (2602)
Q Consensus 533 s~~~l~d~~~~~~~~~~~~~~~~~~~~n~ay~~l~~p~~ra~yll~~~g~~ 583 (2602)
+..|..|++.+.. +.++-..|++||.+|+||.+|+.|- ..|.+
T Consensus 28 ~~~~hPD~~~~~~------~~~~~~~i~~Ay~vLsdp~~R~~YD--~~g~~ 70 (77)
T d1hdja_ 28 ALRYHPDKNKEPG------AEEKFKEIAEAYDVLSDPRKREIFD--RYGEE 70 (77)
T ss_dssp HHTTCTTTCCCTT------HHHHHHHHHHHHHHTTCHHHHHHHH--HTCGG
T ss_pred HHHhccccccchh------HHHHHHHHHHHHHHhcCHHHHHHHH--hhhhh
Confidence 4556666655432 3456789999999999999999995 34544
|
| >d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Long alpha-hairpin superfamily: Chaperone J-domain family: Chaperone J-domain domain: Auxilin J-domain species: Cow (Bos taurus) [TaxId: 9913]
Probab=88.01 E-value=0.037 Score=52.44 Aligned_cols=51 Identities=16% Similarity=0.173 Sum_probs=39.9
Q ss_pred CCEEEEEeCCccchhhhcccccccccchhhhHHhhhhHHHHHhhcCchhHHHH
Q psy15216 523 NGVQIFINEKDLLYFNDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIY 575 (2602)
Q Consensus 523 ~~~~v~vd~~s~~~l~d~~~~~~~~~~~~~~~~~~~~n~ay~~l~~p~~ra~y 575 (2602)
+.|+-..-..++.|..|+..+.. .+..|.+.-..||+||.+|+||-+|++|
T Consensus 48 ~eIk~aYr~l~~~~HPDk~~~~~--~~~~a~~~f~~I~~Ay~~L~d~~~R~~Y 98 (98)
T d1nz6a_ 48 EQVKKVYRKAVLVVHPDKATGQP--YEQYAKMIFMELNDAWSEFENQGQKPLY 98 (98)
T ss_dssp HHHHHHHHHHHHHSCHHHHTTST--THHHHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred HHHHHHHHHHHHHhccccCCChH--HHHHHHHHHHHHHHHHHHHCCHHHHhcC
Confidence 34555556678889999876543 4455777788999999999999999987
|
| >d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Long alpha-hairpin superfamily: Chaperone J-domain family: Chaperone J-domain domain: Large T antigen, the N-terminal J domain species: Murine polyomavirus [TaxId: 10634]
Probab=87.65 E-value=0.074 Score=47.87 Aligned_cols=38 Identities=18% Similarity=0.071 Sum_probs=28.7
Q ss_pred CccccccccccccchhhhHHHHHHHHHHHHHHHhhcChhhHHHHHHH
Q psy15216 1928 KDLLYFNDNFIQKSKIDQDASVKLSTYLNKAYSILKDPFLRSIYLCK 1974 (2602)
Q Consensus 1928 ~s~~~l~~~~~~~~~~~~~~~~~~~~~~n~ay~~l~~p~~r~~y~l~ 1974 (2602)
.++.||+|+.-+ .+ .-.+||+||.+|+||..|..|-+.
T Consensus 37 l~~~~HPDk~g~---~e------~~~~in~Ay~~L~d~~~r~~~~~~ 74 (79)
T d1fafa_ 37 QSLLLHPDKGGS---HA------LMQELNSLWGTFKTEVYNLRMNLG 74 (79)
T ss_dssp HHHHSSGGGSCC---HH------HHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred HHHHhCcccCCC---HH------HHHHHHHHHHHHCCHHHHHHHccC
Confidence 356789998532 22 346999999999999999988543
|
| >d2fxua1 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin species: Cow (Bos taurus) [TaxId: 9913]
Probab=87.39 E-value=1.1 Score=45.10 Aligned_cols=64 Identities=8% Similarity=-0.032 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHhhccccc--eEEEeeCCCCCHHHHHHHHHHH-HHcCCceeEeechhHHHHHHhh
Q psy15216 2140 EISAQIFITLKKIAENAVNNRIF--GAVITVPAYFNDIQRQFTKNAA-KLAGLNVLRLLNEPTSAAIAYK 2206 (2602)
Q Consensus 2140 ev~a~~L~~l~~~a~~~~~~~~~--~~ViTVPa~f~~~qr~~l~~Aa-~~AGl~~~~li~EP~AAAl~y~ 2206 (2602)
+....++.++.. ..++.++. .+++|-|..-....|+.|.+.+ +..++..+.+...|..++++++
T Consensus 74 d~~e~~~~~~~~---~~l~~~~~~~pvlltE~~~~~~~~r~~~~EilFE~~~vp~~~~~~~~~ls~ys~G 140 (140)
T d2fxua1 74 DDMEKIWHHTFY---NELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASG 140 (140)
T ss_dssp HHHHHHHHHHHH---TTSCCCGGGSCEEEEECTTCCHHHHHHHHHHHHHTTCCSEEEEEEHHHHHHHHTT
T ss_pred HHHHHHHHHhhh---hhcccCCCCCcceeeccCCCCHHHHHHHHHHhhccCCCCEEEEEhhHHhHhhcCC
Confidence 444555555443 34444433 5999999999999999888766 5568899999999999987653
|
| >d1e4ft1 c.55.1.1 (T:7-199) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Cell division protein FtsA species: Thermotoga maritima [TaxId: 2336]
Probab=87.10 E-value=0.92 Score=48.67 Aligned_cols=32 Identities=13% Similarity=-0.124 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHcCCceeEeechhHHHHHHh
Q psy15216 2174 DIQRQFTKNAAKLAGLNVLRLLNEPTSAAIAY 2205 (2602)
Q Consensus 2174 ~~qr~~l~~Aa~~AGl~~~~li~EP~AAAl~y 2205 (2602)
....+.++++.+.+|+++..++.+|.|+|.+.
T Consensus 161 ~~~i~nl~~~~~~~~l~v~~~~~~~~asa~a~ 192 (193)
T d1e4ft1 161 LKVYEMFYNFLQDTVKSPFQLKSSLVSTAEGV 192 (193)
T ss_dssp HHHHHHHHHHHHHHSCSCEEEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcchhEEEhHHhhhhcc
Confidence 47889999999999999999999999999753
|
| >d1wria_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Equisetum arvense [TaxId: 3258]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: 2Fe-2S ferredoxin-like family: 2Fe-2S ferredoxin-related domain: 2Fe-2S ferredoxin species: Equisetum arvense [TaxId: 3258]
Probab=86.33 E-value=0.27 Score=45.83 Aligned_cols=40 Identities=28% Similarity=0.428 Sum_probs=33.4
Q ss_pred hccccCCCchhHHHHhcccchhhhcccccccccCcEEEccCc
Q psy15216 1136 IFNENSGISLCDALLKNSIFIEHACEKSCACATCHVIIREGF 1177 (2602)
Q Consensus 1136 ~~~~~~g~~~~~~~~~~~~~~~~~c~g~~~c~tch~~~~~~~ 1177 (2602)
++....|.+|++++++++ .+...|.+ -.|+||.+.|.+|-
T Consensus 14 ~~~~~~~~~lLdaa~~~~-~lp~~Cr~-G~CgtC~~~v~~G~ 53 (93)
T d1wria_ 14 TFDVEPGERLIDIGSEKA-DLPLSCQA-GACSTCLGKIVSGT 53 (93)
T ss_dssp EEEECTTSCHHHHHHHHS-CCCCSSSS-SSSSTTEEEEEESC
T ss_pred EEEeCCCCcHHHHHHhCC-CEEEEeCC-cccCcCEeEeecce
Confidence 467788899999998765 77788966 77999999999883
|
| >d1k8ka1 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin-related protein 3, Arp3 species: Cow (Bos taurus) [TaxId: 9913]
Probab=84.93 E-value=1.6 Score=44.95 Aligned_cols=47 Identities=15% Similarity=0.054 Sum_probs=39.5
Q ss_pred ceEEEeeCCCCCHHHHHHHHHHH-HHcCCceeEeechhHHHHHHhhhc
Q psy15216 2162 FGAVITVPAYFNDIQRQFTKNAA-KLAGLNVLRLLNEPTSAAIAYKLD 2208 (2602)
Q Consensus 2162 ~~~ViTVPa~f~~~qr~~l~~Aa-~~AGl~~~~li~EP~AAAl~y~~~ 2208 (2602)
..+++|-|...+..+|+.+.+.+ +..++..+.+...|..++++++..
T Consensus 106 ~pvlltEp~~~~~~~Re~~~EilFE~~~vpa~~~~~~~~Lslya~g~~ 153 (158)
T d1k8ka1 106 HYFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTS 153 (158)
T ss_dssp CCEEEEECTTCCHHHHHHHHHHHHHTSCCSEEEEEEHHHHHHHHGGGS
T ss_pred CceeeeecCCCCHHHHHHHHHHHhhhcCCCEEEEEchhhhhheeCCCC
Confidence 36999999999999999887765 566889999999999998887654
|
| >d3c8ya2 d.15.4.2 (A:1-126) Fe-only hydrogenase, N-terminal domain {Clostridium pasteurianum [TaxId: 1501]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: 2Fe-2S ferredoxin-like family: 2Fe-2S ferredoxin domains from multidomain proteins domain: Fe-only hydrogenase, N-terminal domain species: Clostridium pasteurianum [TaxId: 1501]
Probab=84.46 E-value=0.29 Score=48.04 Aligned_cols=43 Identities=23% Similarity=0.394 Sum_probs=37.2
Q ss_pred ccccccCCCchHHHHHhhcCcccccccc-----c-ccccCCceEEEcCC
Q psy15216 2530 GAIFNENSGISLCDALLKNSIFIEHACE-----K-SCACATCHVIIREG 2572 (2602)
Q Consensus 2530 ~~~ve~~~g~~~~~~~~~~~~~~~~~c~-----g-~~~c~tch~~~~~~ 2572 (2602)
++.+++..|.++|++++++|+.|.+.|- + ..+|..|-|.|+..
T Consensus 8 G~~v~~~~G~til~aa~~~gi~IP~lC~~~~l~~~~G~Cr~C~Vev~G~ 56 (126)
T d3c8ya2 8 GVQFNTDEDTTILKFARDNNIDISALCFLNNCNNDINKCEICTVEVEGT 56 (126)
T ss_dssp TEEEEECCCCBHHHHHHHTTCCCCCSSCBTTBCCSSSCCCTTEEEETTT
T ss_pred CEEEEeCCCChHHHHHHHcCCccchhhhccCCCCCCccceeEEEEEccC
Confidence 3678899999999999999999999992 3 46899999999753
|
| >d2fsja2 c.55.1.12 (A:1-164) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Ta0583-like domain: Hypothetical protein Ta0583 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=80.91 E-value=0.52 Score=49.26 Aligned_cols=45 Identities=22% Similarity=0.154 Sum_probs=32.6
Q ss_pred eEEEEEcCCCCHHHHHHHHHHHHHc--------CC------ceEEEechhHHHHHHhhhc
Q psy15216 767 GAVITVPAYFNDIQRQFTKNAAKLA--------GL------NVLRLLNEPTSAAIAYKLD 812 (2602)
Q Consensus 767 ~~ViTVPa~f~~~qr~~~~~Aa~~A--------Gl------~~~~li~EPtAAAl~y~~~ 812 (2602)
.+|+..|..+...+++++++..+-- |- +.+.++.||.+|.+ |.+.
T Consensus 103 ~lv~GLP~~~~~~~ke~~~~~l~~~~~~~~~~~g~~~~i~I~~v~V~pQg~ga~~-~~l~ 161 (164)
T d2fsja2 103 VIGSGTPLGTFDLEVKAAKEALENKVLTVTGPEGEVRQFNITRLIMRPQGVGAAL-YLLN 161 (164)
T ss_dssp EEEEEECGGGHHHHHHHHHHHHTTEEEEEECGGGCEEEEEEEEEEEEETTHHHHH-HHHH
T ss_pred EEEecCCHHHHHHHHHHHHHHhcCCCceEEeeCCeEEEEEEeEEEEecCCHHHHH-HHHH
Confidence 3677789999888999999876421 11 34777899998777 5444
|
| >d1sz2a1 c.55.1.7 (A:3-321) Glucokinase Glk {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Glucokinase domain: Glucokinase Glk species: Escherichia coli [TaxId: 562]
Probab=80.89 E-value=25 Score=39.78 Aligned_cols=78 Identities=15% Similarity=0.165 Sum_probs=42.0
Q ss_pred cCccceEEEEEcCCCCHHHH--------HHHHHHHHHcCCceEEEechhHHHHHHhhh-----------ccCcccceEEE
Q psy15216 762 NNRIFGAVITVPAYFNDIQR--------QFTKNAAKLAGLNVLRLLNEPTSAAIAYKL-----------DKNIFEGIFAV 822 (2602)
Q Consensus 762 ~~~~~~~ViTVPa~f~~~qr--------~~~~~Aa~~AGl~~~~li~EPtAAAl~y~~-----------~~~~~~~~vlV 822 (2602)
+.++..+.|+||.-.+.... -......+..+...+.+.++..+++..... ........+++
T Consensus 51 ~~~~~~igI~~pG~vd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 130 (319)
T d1sz2a1 51 KVEVKDGCIAIACPITGDWVAMTNHTWAFSIAEMKKNLGFSHLEIINDFTAVSMAIPMLKKEHLIQFGGAEPVEGKPIAV 130 (319)
T ss_dssp CCCCCEEEEEESSCCCSSEECCSSSCCCEEHHHHHHHHTCSEEEEEEHHHHHHHHGGGCCGGGEEECSSCCCCTTCCEEE
T ss_pred CCCcceEEEEcccCCCCCcccccccccccChHHHHHhhcccceeecceeeeeehhhhhhhhhhHHhhCcccCCCcceEEE
Confidence 45667788888755432100 012233344466777778887777764321 11122346677
Q ss_pred EEeCCceEEEEEEEEEC
Q psy15216 823 YDLGGGTFDISILKFKN 839 (2602)
Q Consensus 823 ~D~GGGT~Dvsv~~~~~ 839 (2602)
+-.|.|+-=+....+..
T Consensus 131 i~~g~G~g~~~~~~~~~ 147 (319)
T d1sz2a1 131 YGAGTGLGVAHLVHVDK 147 (319)
T ss_dssp EEESSSEEEEEEEEETT
T ss_pred EcccccceEEEEecccC
Confidence 77777766555444443
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| >d2fsja2 c.55.1.12 (A:1-164) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Ta0583-like domain: Hypothetical protein Ta0583 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=80.31 E-value=0.48 Score=49.51 Aligned_cols=45 Identities=22% Similarity=0.154 Sum_probs=32.5
Q ss_pred eEEEeeCCCCCHHHHHHHHHHHHHc--------CC------ceeEeechhHHHHHHhhhc
Q psy15216 2163 GAVITVPAYFNDIQRQFTKNAAKLA--------GL------NVLRLLNEPTSAAIAYKLD 2208 (2602)
Q Consensus 2163 ~~ViTVPa~f~~~qr~~l~~Aa~~A--------Gl------~~~~li~EP~AAAl~y~~~ 2208 (2602)
.+|+..|..+...+++++++..+.- |- +.+.++.||.+|.+ |.+.
T Consensus 103 ~lv~GLP~~~~~~~ke~~~~~l~~~~~~~~~~~g~~~~i~I~~v~V~pQg~ga~~-~~l~ 161 (164)
T d2fsja2 103 VIGSGTPLGTFDLEVKAAKEALENKVLTVTGPEGEVRQFNITRLIMRPQGVGAAL-YLLN 161 (164)
T ss_dssp EEEEEECGGGHHHHHHHHHHHHTTEEEEEECGGGCEEEEEEEEEEEEETTHHHHH-HHHH
T ss_pred EEEecCCHHHHHHHHHHHHHHhcCCCceEEeeCCeEEEEEEeEEEEecCCHHHHH-HHHH
Confidence 3678899999888999999876421 11 34677899988777 4443
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