Psyllid ID: psy1521

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-----
Protein Sequence
MRAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKPCPTVPSEPNANATTGEKTTFYFHFQVKLVVLRDTVTKEDDLLEFVDVELTKKAGKGFGLSLVGRKQGPGVFISDLVSE
Secondary Structure (PSIPRED)
cEEEcccccccccccccccEEEEEccccccccccccccEEEccEEEEEEEccccccccccccccccEEEEEccEEcccccHHHHHHHHHcccccccccccccccccccccccccccccccccEEEEEcccccccccccccEEEEEEEEcccccccEEEEcccccccEEEEEcccc
Secondary Structure Prediction (SSPRO)
ccEEcccHHHHHccccccEEEEEEccEEcccccHHHHHHHHHcEEEEEEEccccHHHHHcccccccEEEEEccEEcccccHHHHHHHHHHccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccEEEEEEccccccEEEEEcccccccEEEEEEEcc
Coil and Loop (DISEMBL)
mravpggiaatdgrllkgdqimsvdgtdvrdKSQEEVATIMKGGIlvhdiypegaaakDARLKFGDQILELTGEDFRNITHAKAMAHLrltpakakpcptvpsepnanattgekttFYFHFQVKLVVLRdtvtkeddlleFVDVELTKkagkgfglslvgrkqgpgvfisdlvse
Flexible Loop (DISEMBL)
mravpggiaatdgrllkgdqimsvdgtdvrdKSQEEVATIMKGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKPCPTVPSEPNANATTGEKTTFYFHFQVKLVVLRDTVTKEDDLLEFVDveltkkagkgfglslvgrkqgpgvfisdlvse
Low Complexity Region (SEG)
MRAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKPCPTVPSEPNANATTGEKTTFYFHFQVKLVVLRDTVTKEDDLLEFVDVELTKKAGKGFGLSLVGRKQGPGVFISDLVSE
Disordered region (IsUnstruct)
************************************VATIMKGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRL***********************KTTFYFHFQVKLVVLRDTVTKEDDLLEFVDVELTKKAGKGFGLSLVGRKQGPGVFI******
Disordered Region (DISOPRED)
MRAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRL*************************************************EFVDVELTKKAGKGFGLSLVGRKQGPGVFISDLVSE
Disordered Region (DISEMBL)
MRAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKPCPTVPSEPNANATTGEKTTFYFHFQVKLVVLRDTVTKEDDLLEFVDVELTKKAGKGFGLSLVGRKQGPGVFISDLVSE
Disordered Region (DISPRO)
*RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKPCPTVPSE*********************************LLEFVDVELTKKAGKGFGLSLVGRKQGPGVFISDLVSE
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKPCPTVPSEPNANATTGEKTTFYFHFQVKLVVLRDTVTKEDDLLEFVDVELTKKAGKGFGLSLVGRKQGPGVFISDLVSE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	175	2.2.26 [Sep-21-2011]
Q8NI35	1801	InaD-like protein OS=Homo	yes	N/A	0.588	0.057	0.424	2e-21
Q63ZW7	1834	InaD-like protein OS=Mus	no	N/A	0.582	0.055	0.412	9e-20
O55164	2054	Multiple PDZ domain prote	no	N/A	0.588	0.050	0.401	4e-19
O75970	2070	Multiple PDZ domain prote	no	N/A	0.588	0.049	0.393	4e-19
Q8VBX6	2055	Multiple PDZ domain prote	no	N/A	0.588	0.050	0.393	5e-19
Q8N448	690	Ligand of Numb protein X	no	N/A	0.628	0.159	0.284	3e-06
Q91XL2	687	Ligand of Numb protein X	no	N/A	0.628	0.160	0.292	4e-06
Q5PYH6	873	Disks large homolog 1 OS=	no	N/A	0.965	0.193	0.235	9e-06
Q5PYH5	827	Discs large homolog 1-lik	no	N/A	0.902	0.191	0.244	1e-05
Q9CSB4	1203	Partitioning defective 3	no	N/A	0.268	0.039	0.489	6e-05

>sp|Q8NI35|INADL_HUMAN InaD-like protein OS=Homo sapiens GN=INADL PE=1 SV=3

 Score =  101 bits (252), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 56/132 (42%), Positives = 76/132 (57%), Gaps = 29/132 (21%)

Query: 43   GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKPCPTVP 102
              I++H++Y EGAAA+D RL  GDQILE+ G D RN +H +A+  LR TP K        
Sbjct: 1460 NAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEAITALRQTPQK-------- 1511

Query: 103  SEPNANATTGEKTTFYFHFQVKLVVLRDTV-TKEDDLLEFVDVELTKKAGKGFGLSLVGR 161
                                V+LVV RD    ++++ LE   V+L KKAG+G GLS+VG+
Sbjct: 1512 --------------------VRLVVYRDEAHYRDEENLEIFPVDLQKKAGRGLGLSIVGK 1551

Query: 162  KQGPGVFISDLV 173
            + G GVFISD+V
Sbjct: 1552 RNGSGVFISDIV 1563

Scaffolding protein that may bring different proteins into adjacent positions at the cell membrane. May regulate protein targeting, cell polarity and integrity of tight junctions. May regulate the surface expression and/or function of ASIC3 in sensory neurons.
Homo sapiens (taxid: 9606)

>sp|Q63ZW7|INADL_MOUSE InaD-like protein OS=Mus musculus GN=Inadl PE=1 SV=2

 Score = 96.3 bits (238), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 54/131 (41%), Positives = 75/131 (57%), Gaps = 29/131 (22%)

Query: 44   GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKPCPTVPS 103
             I++H++Y EGAAA+D RL  GDQILE+ G D R+ +H +A+  LR TP K         
Sbjct: 1496 AIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRSSSHEEAITALRQTPQK--------- 1546

Query: 104  EPNANATTGEKTTFYFHFQVKLVVLRDTVT-KEDDLLEFVDVELTKKAGKGFGLSLVGRK 162
                               V+LVV RD    ++++ LE   V+L KK G+G GLS+VG++
Sbjct: 1547 -------------------VRLVVYRDEAQYRDEENLEVFLVDLQKKTGRGLGLSIVGKR 1587

Query: 163  QGPGVFISDLV 173
             G GVFISD+V
Sbjct: 1588 SGSGVFISDIV 1598

Scaffolding protein that may bring different proteins into adjacent positions at the cell membrane. May regulate protein targeting, cell polarity and integrity of tight junctions. May regulate the surface expression and/or function of ASIC3 in sensory neurons.

Mus musculus (taxid: 10090)

>sp|O55164|MPDZ_RAT Multiple PDZ domain protein OS=Rattus norvegicus GN=Mpdz PE=1 SV=1

 Score = 94.4 bits (233), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 53/132 (40%), Positives = 72/132 (54%), Gaps = 29/132 (21%)

Query: 43   GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKPCPTVP 102
            G I++H++Y EGAA KD RL  GDQILE+ G D R  TH +A+  LR TP +        
Sbjct: 1636 GAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQTPQR-------- 1687

Query: 103  SEPNANATTGEKTTFYFHFQVKLVVLRDTVT-KEDDLLEFVDVELTKKAGKGFGLSLVGR 161
                                V+L + RD    KE+D+ +   VEL K+ GKG GLS+VG+
Sbjct: 1688 --------------------VRLTLYRDEAPYKEEDVCDTFTVELQKRPGKGLGLSIVGK 1727

Query: 162  KQGPGVFISDLV 173
            +   GVF+SD+V
Sbjct: 1728 RNDTGVFVSDIV 1739

Interacts with HTR2C and provokes its clustering at the cell surface. Member of the NMDAR signaling complex that may play a role in control of AMPAR potentiation and synaptic plasticity in excitatory synapses.

Rattus norvegicus (taxid: 10116)

>sp|O75970|MPDZ_HUMAN Multiple PDZ domain protein OS=Homo sapiens GN=MPDZ PE=1 SV=2

 Score = 94.0 bits (232), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 52/132 (39%), Positives = 73/132 (55%), Gaps = 29/132 (21%)

Query: 43   GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKPCPTVP 102
            G I++H++Y EGAA KD RL  GDQILE+ G D R  TH +A+  LR TP +        
Sbjct: 1652 GAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQTPQR-------- 1703

Query: 103  SEPNANATTGEKTTFYFHFQVKLVVLRDTVT-KEDDLLEFVDVELTKKAGKGFGLSLVGR 161
                                V+L + RD    KE+++ + + +EL KK GKG GLS+VG+
Sbjct: 1704 --------------------VRLTLYRDEAPYKEEEVCDTLTIELQKKPGKGLGLSIVGK 1743

Query: 162  KQGPGVFISDLV 173
            +   GVF+SD+V
Sbjct: 1744 RNDTGVFVSDIV 1755

Interacts with HTR2C and provokes its clustering at the cell surface (By similarity). Member of the NMDAR signaling complex that may play a role in control of AMPAR potentiation and synaptic plasticity in excitatory synapses.

Homo sapiens (taxid: 9606)

>sp|Q8VBX6|MPDZ_MOUSE Multiple PDZ domain protein OS=Mus musculus GN=Mpdz PE=1 SV=2

 Score = 93.6 bits (231), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 52/132 (39%), Positives = 72/132 (54%), Gaps = 29/132 (21%)

Query: 43   GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKPCPTVP 102
            G I++H++Y EGAA KD RL  GDQILE+ G D R  TH +A+  LR TP +        
Sbjct: 1637 GAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQTPQR-------- 1688

Query: 103  SEPNANATTGEKTTFYFHFQVKLVVLRDTVT-KEDDLLEFVDVELTKKAGKGFGLSLVGR 161
                                V+L + RD    KE+D+ +   +EL K+ GKG GLS+VG+
Sbjct: 1689 --------------------VRLTLYRDEAPYKEEDVCDTFTIELQKRPGKGLGLSIVGK 1728

Query: 162  KQGPGVFISDLV 173
            +   GVF+SD+V
Sbjct: 1729 RNDTGVFVSDIV 1740

Interacts with HTR2C and provokes its clustering at the cell surface. Member of the NMDAR signaling complex that may play a role in control of AMPAR potentiation and synaptic plasticity in excitatory synapses.

Mus musculus (taxid: 10090)

>sp|Q8N448|LNX2_HUMAN Ligand of Numb protein X 2 OS=Homo sapiens GN=LNX2 PE=1 SV=1

 Score = 51.2 bits (121), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/130 (28%), Positives = 64/130 (49%), Gaps = 20/130 (15%)

Query: 45  ILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKPCPTVPSE 104
           I++ ++Y +G  A+D RL  GDQIL++   +  N++H  A A L      ++PC T+   
Sbjct: 260 IVIQEVYRDGVIARDGRLLAGDQILQVNNYNISNVSHNYARAVL------SQPCNTLHLT 313

Query: 105 PNANATTGEKTTFYFHFQVKLVVLRDTVTKEDDLLEFVDVELTKK-AGKGFGLSLVGRKQ 163
                  G +   +           D+ +  +++ +   V L K+ +G+  G+ LV R  
Sbjct: 314 VLRERRFGNRAHNH----------SDSNSPREEIFQ---VALHKRDSGEQLGIKLVRRTD 360

Query: 164 GPGVFISDLV 173
            PGVFI DL+
Sbjct: 361 EPGVFILDLL 370

Homo sapiens (taxid: 9606)

>sp|Q91XL2|LNX2_MOUSE Ligand of Numb protein X 2 OS=Mus musculus GN=Lnx2 PE=1 SV=2

 Score = 50.8 bits (120), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 20/130 (15%)

Query: 45  ILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKPCPTVPSE 104
           I++ ++Y +G  A+D RL  GDQIL++   D  N++H  A A L      ++PC T+   
Sbjct: 259 IVIQEVYRDGVIARDGRLLAGDQILQVNNYDISNVSHNHARAVL------SQPCSTLQLT 312

Query: 105 PNANATTGEKTTFYFHFQVKLVVLRDTVTKEDDLLEFVDVELTKK-AGKGFGLSLVGRKQ 163
                  G +   +           D     D++ +   V L K+ + +  G+ LV R  
Sbjct: 313 VLRERRFGSRANSH----------ADGSAPRDEVFQ---VLLHKRDSTEQLGIKLVRRTD 359

Query: 164 GPGVFISDLV 173
            PGVFI DL+
Sbjct: 360 EPGVFILDLL 369

Mus musculus (taxid: 10090)

>sp|Q5PYH6|DLG1_DANRE Disks large homolog 1 OS=Danio rerio GN=dlg1 PE=2 SV=2

 Score = 49.7 bits (117), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 56/238 (23%), Positives = 84/238 (35%), Gaps = 69/238 (28%)

Query: 2   RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK------------------- 42
           + +PGG AA DGRL   D I+ V+  DVRD +       +K                   
Sbjct: 263 KIIPGGAAAQDGRLRVNDCILRVNDVDVRDVTHSNAVEALKEAGCIVRLYVRRRKPLSEK 322

Query: 43  -----------------------------GGILVHDIYPEGAAAKDARLKFGDQILELTG 73
                                          I +  I   GAA KD RL+ GD++L +  
Sbjct: 323 IMDVKLVKGPKGLGFSIAGGVGNQHIPGDNSIYITKIIEGGAAHKDGRLQIGDKLLAVNA 382

Query: 74  EDFRNITHAKAMAHLRLTP-----AKAKPCPTVPSEPNA--NATTGEKTTFYFHFQVKLV 126
                +TH  A+A L+ TP       AKP     ++  A  + T+        H   +  
Sbjct: 383 VCLEEVTHEDAVAALKNTPDVVYLKVAKPTSVFMNDSYAPPDVTSSYSQHMENHISTQSY 442

Query: 127 VLRDTVTKEDDLLEFV------DVELTKKAGK--------GFGLSLVGRKQGPGVFIS 170
           + +            V      D E+T++  K        G G ++VG + G G+FIS
Sbjct: 443 LSQPLTPATPSRYSPVSKGMLGDDEITREPRKIVLHRGTTGLGFNIVGGEDGEGIFIS 500

Essential multidomain scaffolding protein required for normal development. Recruits channels, receptors and signaling molecules to discrete plasma membrane domains in polarized cells. May play a role in adherens junction assembly, signal transduction and cell proliferation (By similarity). May play a role in synapse assembly and function.

Danio rerio (taxid: 7955)

>sp|Q5PYH5|DLG1L_DANRE Discs large homolog 1-like protein OS=Danio rerio GN=dlg1l PE=2 SV=1

 Score = 49.3 bits (116), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 61/249 (24%), Positives = 86/249 (34%), Gaps = 91/249 (36%)

Query: 2   RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK------------------- 42
           + +PGG AA DGRL   D I+ V+  DVRD +  +    +K                   
Sbjct: 192 KVIPGGAAAQDGRLRVNDVILRVNEVDVRDVTHSKAVEALKEAGSLVRLYVRRRKSASEK 251

Query: 43  ------------------GG-----------ILVHDIYPEGAAAKDARLKFGDQILELTG 73
                             GG           I V  I   GAA KD RL+ GD++L +  
Sbjct: 252 VMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKLLAVNS 311

Query: 74  EDFRNITHAKAMAHLRLTP-----AKAKPC---------------------------PTV 101
                +TH  A+  L+ TP       AKP                            P+ 
Sbjct: 312 SCLEEVTHEHAVTALKNTPDVVYLKVAKPNSVFMNDSFAPPDITNSYSQHMENHISPPSY 371

Query: 102 PSEPNANATTGEKTTFYFHFQVKLVVLRDTVTKEDDLLEFVDVELTKKAGKGFGLSLVGR 161
            S+P     +G      F    K  V  D VT+E   +      +  +   G G ++VG 
Sbjct: 372 LSQPLPPVHSGR-----FSPTPKTTVGDDDVTREPRKV------VLHRGTTGLGFNIVGG 420

Query: 162 KQGPGVFIS 170
           + G G+FIS
Sbjct: 421 EDGEGIFIS 429

May play a role in synapse assembly and function.

Danio rerio (taxid: 7955)

>sp|Q9CSB4|PAR3L_MOUSE Partitioning defective 3 homolog B OS=Mus musculus GN=Pard3b PE=1 SV=2

 Score = 47.0 bits (110), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/49 (48%), Positives = 31/49 (63%)

Query: 43  GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLT 91
           G I V +I P+GAA KD RL+ GD+ILE+ G D    T  + +A LR T
Sbjct: 408 GPIFVKNILPKGAAVKDGRLQSGDRILEVNGRDVTGRTQEELVAMLRST 456

Putative adapter protein involved in asymmetrical cell division and cell polarization processes. May play a role in the formation of epithelial tight junctions.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	175
321475910	370	hypothetical protein DAPPUDRAFT_43800 [D	0.588	0.278	0.5	7e-28
328708386	2081	PREDICTED: multiple PDZ domain protein-l	0.582	0.049	0.435	7e-23
395516015	2074	PREDICTED: multiple PDZ domain protein [	0.617	0.052	0.430	8e-21
449514518	2040	PREDICTED: multiple PDZ domain protein [	0.617	0.052	0.416	3e-20
397475572	1800	PREDICTED: inaD-like protein [Pan panisc	0.588	0.057	0.431	4e-20
410291498	1801	InaD-like [Pan troglodytes] gi|410347864	0.588	0.057	0.431	4e-20
410033031	1793	PREDICTED: inaD-like protein isoform 6 [	0.588	0.057	0.431	4e-20
380804345	438	inaD-like protein, partial [Macaca mulat	0.577	0.230	0.430	5e-20
194374211	452	unnamed protein product [Homo sapiens]	0.594	0.230	0.421	7e-20
426329850	474	PREDICTED: inaD-like protein-like [Goril	0.577	0.213	0.430	7e-20

>gi|321475910|gb|EFX86871.1| hypothetical protein DAPPUDRAFT_43800 [Daphnia pulex]

 Score =  128 bits (322), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 66/132 (50%), Positives = 88/132 (66%), Gaps = 29/132 (21%)

Query: 43  GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKPCPTVP 102
           G IL+H++YP+GAAA+D RLK GDQILE+ GE FRNITH++A+A LR TPAK        
Sbjct: 79  GAILIHEVYPDGAAARDKRLKPGDQILEVNGESFRNITHSRALAVLRQTPAK-------- 130

Query: 103 SEPNANATTGEKTTFYFHFQVKLVVLRD-TVTKEDDLLEFVDVELTKKAGKGFGLSLVGR 161
                               V+++V RD T  K+DD+L+ ++VEL KK G+G GLS+VGR
Sbjct: 131 --------------------VRMMVYRDETSLKDDDMLDIIEVELLKKPGRGLGLSIVGR 170

Query: 162 KQGPGVFISDLV 173
           + GPGV+ISD+V
Sbjct: 171 RNGPGVYISDVV 182

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328708386|ref|XP_001942633.2| PREDICTED: multiple PDZ domain protein-like [Acyrthosiphon pisum]

 Score =  112 bits (279), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 61/140 (43%), Positives = 82/140 (58%), Gaps = 38/140 (27%)

Query: 45   ILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKPCPTVPSE 104
            +++H++YP+GAAAKD RL+ GDQ++E+ GEDFR+ITH KA+  LR TPAK          
Sbjct: 1820 VMIHEVYPDGAAAKDGRLRPGDQLVEVNGEDFRSITHIKALGVLRQTPAK---------- 1869

Query: 105  PNANATTGEKTTFYFHFQVKLVVLRDTVTKED----------DLLEFVDVELTKKAGKGF 154
                              V +VVLRD     D          ++++  DVELTKK  KG 
Sbjct: 1870 ------------------VTMVVLRDESCVPDENGRVSADTTNIMDAFDVELTKKPSKGL 1911

Query: 155  GLSLVGRKQGPGVFISDLVS 174
            GLS+VGRK G G+FISD+V+
Sbjct: 1912 GLSIVGRKSGSGIFISDIVA 1931

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|395516015|ref|XP_003762192.1| PREDICTED: multiple PDZ domain protein [Sarcophilus harrisii]

 Score =  105 bits (262), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 59/137 (43%), Positives = 76/137 (55%), Gaps = 29/137 (21%)

Query: 38   ATIMKGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKP 97
            A  + G I++H++Y EGAA KD RL  GDQILE+ G D RN TH +A+  LR TP K   
Sbjct: 1651 ADTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRNATHDEAINVLRQTPQK--- 1707

Query: 98   CPTVPSEPNANATTGEKTTFYFHFQVKLVVLRDTVT-KEDDLLEFVDVELTKKAGKGFGL 156
                                     V+L V RD    KEDD+ +  +VEL KK GKG GL
Sbjct: 1708 -------------------------VRLTVYRDEAQYKEDDMYDMFNVELQKKPGKGLGL 1742

Query: 157  SLVGRKQGPGVFISDLV 173
            S+VG++   GVF+SD+V
Sbjct: 1743 SIVGKRNDTGVFVSDIV 1759

Source: Sarcophilus harrisii

Species: Sarcophilus harrisii

Genus: Sarcophilus

Family: Dasyuridae

Order: Dasyuromorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|449514518|ref|XP_002192031.2| PREDICTED: multiple PDZ domain protein [Taeniopygia guttata]

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 57/137 (41%), Positives = 78/137 (56%), Gaps = 29/137 (21%)

Query: 38   ATIMKGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKP 97
            A  + G I++H++Y EGAA+KD RL  GDQILE+ G D RN TH +A+  LR TP K   
Sbjct: 1615 ADTLLGAIIIHEVYEEGAASKDGRLWAGDQILEVNGIDLRNATHDEAINVLRQTPQK--- 1671

Query: 98   CPTVPSEPNANATTGEKTTFYFHFQVKLVVLRDTVT-KEDDLLEFVDVELTKKAGKGFGL 156
                                     V+L V RD    KE+D+ + +++EL KK GKG GL
Sbjct: 1672 -------------------------VRLTVYRDEAQYKEEDMYDVLNIELQKKPGKGLGL 1706

Query: 157  SLVGRKQGPGVFISDLV 173
            S+VG++   GVF+SD+V
Sbjct: 1707 SIVGKRNDTGVFVSDIV 1723

Source: Taeniopygia guttata

Species: Taeniopygia guttata

Genus: Taeniopygia

Family: Estrildidae

Order: Passeriformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|397475572|ref|XP_003809209.1| PREDICTED: inaD-like protein [Pan paniscus]

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 57/132 (43%), Positives = 77/132 (58%), Gaps = 29/132 (21%)

Query: 43   GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKPCPTVP 102
              I++H++Y EGAAA+D RL  GDQILE+ G D RN +H +A+A LR TP K        
Sbjct: 1459 NAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEAIAALRQTPQK-------- 1510

Query: 103  SEPNANATTGEKTTFYFHFQVKLVVLRDTV-TKEDDLLEFVDVELTKKAGKGFGLSLVGR 161
                                V+LVV RD    ++++ LE   V+L KKAG+G GLS+VG+
Sbjct: 1511 --------------------VRLVVYRDEAHYRDEENLEIFPVDLQKKAGRGLGLSIVGK 1550

Query: 162  KQGPGVFISDLV 173
            + G GVFISD+V
Sbjct: 1551 RNGSGVFISDIV 1562

Source: Pan paniscus

Species: Pan paniscus

Genus: Pan

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|410291498|gb|JAA24349.1| InaD-like [Pan troglodytes] gi|410347864|gb|JAA40750.1| InaD-like [Pan troglodytes]

 Score =  102 bits (255), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 57/132 (43%), Positives = 77/132 (58%), Gaps = 29/132 (21%)

Query: 43   GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKPCPTVP 102
              I++H++Y EGAAA+D RL  GDQILE+ G D RN +H +A+A LR TP K        
Sbjct: 1460 NAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEAIAALRQTPQK-------- 1511

Query: 103  SEPNANATTGEKTTFYFHFQVKLVVLRDTV-TKEDDLLEFVDVELTKKAGKGFGLSLVGR 161
                                V+LVV RD    ++++ LE   V+L KKAG+G GLS+VG+
Sbjct: 1512 --------------------VRLVVYRDEAHYRDEENLEIFPVDLQKKAGRGLGLSIVGK 1551

Query: 162  KQGPGVFISDLV 173
            + G GVFISD+V
Sbjct: 1552 RNGSGVFISDIV 1563

Source: Pan troglodytes

Species: Pan troglodytes

Genus: Pan

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|410033031|ref|XP_001158789.2| PREDICTED: inaD-like protein isoform 6 [Pan troglodytes]

 Score =  102 bits (255), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 57/132 (43%), Positives = 77/132 (58%), Gaps = 29/132 (21%)

Query: 43   GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKPCPTVP 102
              I++H++Y EGAAA+D RL  GDQILE+ G D RN +H +A+A LR TP K        
Sbjct: 1460 NAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEAIAALRQTPQK-------- 1511

Query: 103  SEPNANATTGEKTTFYFHFQVKLVVLRDTV-TKEDDLLEFVDVELTKKAGKGFGLSLVGR 161
                                V+LVV RD    ++++ LE   V+L KKAG+G GLS+VG+
Sbjct: 1512 --------------------VRLVVYRDEAHYRDEENLEIFPVDLQKKAGRGLGLSIVGK 1551

Query: 162  KQGPGVFISDLV 173
            + G GVFISD+V
Sbjct: 1552 RNGSGVFISDIV 1563

Source: Pan troglodytes

Species: Pan troglodytes

Genus: Pan

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|380804345|gb|AFE74048.1| inaD-like protein, partial [Macaca mulatta]

 Score =  102 bits (254), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 56/130 (43%), Positives = 76/130 (58%), Gaps = 29/130 (22%)

Query: 45  ILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKPCPTVPSE 104
           I++H++Y EGAAA+D RL  GDQILE+ G D RN +H +A+  LR TP K          
Sbjct: 124 IVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEAITALRQTPQK---------- 173

Query: 105 PNANATTGEKTTFYFHFQVKLVVLRDTV-TKEDDLLEFVDVELTKKAGKGFGLSLVGRKQ 163
                             V+LVV RD    ++++ LE   V+L KKAG+G GLS+VG++ 
Sbjct: 174 ------------------VRLVVYRDEAHYRDEENLEMFPVDLQKKAGRGLGLSIVGKRN 215

Query: 164 GPGVFISDLV 173
           G GVFISD+V
Sbjct: 216 GSGVFISDIV 225

Source: Macaca mulatta

Species: Macaca mulatta

Genus: Macaca

Family: Cercopithecidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|194374211|dbj|BAG57001.1| unnamed protein product [Homo sapiens]

 Score =  102 bits (253), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 56/133 (42%), Positives = 77/133 (57%), Gaps = 29/133 (21%)

Query: 42  KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKPCPTV 101
           +  I++H++Y EGAAA+D RL  GDQILE+ G D RN +H +A+  LR TP K       
Sbjct: 273 QNAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEAITALRQTPQK------- 325

Query: 102 PSEPNANATTGEKTTFYFHFQVKLVVLRDTV-TKEDDLLEFVDVELTKKAGKGFGLSLVG 160
                                V+LVV RD    ++++ LE   V+L KKAG+G GLS+VG
Sbjct: 326 ---------------------VRLVVYRDEAHYRDEENLEIFPVDLQKKAGRGLGLSIVG 364

Query: 161 RKQGPGVFISDLV 173
           ++ G GVFISD+V
Sbjct: 365 KRNGSGVFISDIV 377

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|426329850|ref|XP_004025944.1| PREDICTED: inaD-like protein-like [Gorilla gorilla gorilla]

 Score =  102 bits (253), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 56/130 (43%), Positives = 76/130 (58%), Gaps = 29/130 (22%)

Query: 45  ILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKPCPTVPSE 104
           I++H++Y EGAAA+D RL  GDQILE+ G D RN +H +A+  LR TP K          
Sbjct: 135 IVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEAITALRQTPQK---------- 184

Query: 105 PNANATTGEKTTFYFHFQVKLVVLRDTV-TKEDDLLEFVDVELTKKAGKGFGLSLVGRKQ 163
                             V+LVV RD    ++++ LE   V+L KKAG+G GLS+VG++ 
Sbjct: 185 ------------------VRLVVYRDEAHYRDEENLEIFPVDLQKKAGRGLGLSIVGKRN 226

Query: 164 GPGVFISDLV 173
           G GVFISD+V
Sbjct: 227 GSGVFISDIV 236

Source: Gorilla gorilla gorilla

Species: Gorilla gorilla

Genus: Gorilla

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	175
UNIPROTKB|Q8NI35	1801	INADL "InaD-like protein" [Hom	0.297	0.028	0.538	3.2e-28
UNIPROTKB|E1BLF1	1794	Bt.110063 "Uncharacterized pro	0.297	0.028	0.519	1.7e-27
UNIPROTKB|F1SMP5	1588	MPDZ "Uncharacterized protein"	0.337	0.037	0.491	3.6e-27
UNIPROTKB|E1C4T3	1839	E1C4T3 "Uncharacterized protei	0.297	0.028	0.538	3.7e-27
UNIPROTKB|F1N9G0	1999	F1N9G0 "Uncharacterized protei	0.337	0.029	0.508	3.8e-27
MGI|MGI:1277960	1834	Inadl "InaD-like (Drosophila)"	0.297	0.028	0.519	5.9e-27
UNIPROTKB|F1MMT3	2056	F1MMT3 "Uncharacterized protei	0.308	0.026	0.518	6.7e-27
UNIPROTKB|O75970	2070	MPDZ "Multiple PDZ domain prot	0.308	0.026	0.518	1.8e-26
UNIPROTKB|F1MAD2	1833	Inadl2 "Protein Inadl2" [Rattu	0.297	0.028	0.519	3.1e-26
RGD|3105	2054	Mpdz "multiple PDZ domain prot	0.308	0.026	0.518	1.2e-25

UNIPROTKB|Q8NI35 INADL "InaD-like protein" [Homo sapiens (taxid:9606)]

 Score = 149 (57.5 bits), Expect = 3.2e-28, Sum P(3) = 3.2e-28
 Identities = 28/52 (53%), Positives = 38/52 (73%)

Query:    45 ILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK 96
             I++H++Y EGAAA+D RL  GDQILE+ G D RN +H +A+  LR TP K +
Sbjct:  1462 IVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEAITALRQTPQKVR 1513

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0005923 "tight junction" evidence=IDA

GO:0005886 "plasma membrane" evidence=TAS

GO:0034329 "cell junction assembly" evidence=TAS

GO:0045216 "cell-cell junction organization" evidence=TAS

GO:0070830 "tight junction assembly" evidence=TAS

UNIPROTKB|E1BLF1 Bt.110063 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 143 (55.4 bits), Expect = 1.7e-27, Sum P(3) = 1.7e-27
 Identities = 27/52 (51%), Positives = 37/52 (71%)

Query:    45 ILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK 96
             I++H++Y EGAAA+D RL  GDQILE+ G D R  +H +A+  LR TP K +
Sbjct:  1499 IVIHEVYEEGAAARDGRLWAGDQILEVNGIDLRRASHEEAITALRQTPQKVR 1550

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0045177 "apical part of cell" evidence=IEA

GO:0005923 "tight junction" evidence=IEA

UNIPROTKB|F1SMP5 MPDZ "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 148 (57.2 bits), Expect = 3.6e-27, Sum P(3) = 3.6e-27
 Identities = 29/59 (49%), Positives = 39/59 (66%)

Query:    38 ATIMKGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK 96
             A  + G I++H++Y EGAA KD RL  GDQILE+ G D R  TH +A+  LR TP + +
Sbjct:  1194 ADTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQTPQRVR 1252

GO:0043220 "Schmidt-Lanterman incisure" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0016327 "apicolateral plasma membrane" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0005923 "tight junction" evidence=IEA

UNIPROTKB|E1C4T3 E1C4T3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 147 (56.8 bits), Expect = 3.7e-27, Sum P(3) = 3.7e-27
 Identities = 28/52 (53%), Positives = 37/52 (71%)

Query:    45 ILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK 96
             I++H++Y EGAAA+D RL  GDQILE+ G D RN  H +A+  LR TP K +
Sbjct:  1500 IVIHEVYEEGAAARDGRLWAGDQILEVNGIDLRNANHEEAITALRQTPQKVQ 1551

GO:0005923 "tight junction" evidence=IEA

GO:0045177 "apical part of cell" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

UNIPROTKB|F1N9G0 F1N9G0 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 153 (58.9 bits), Expect = 3.8e-27, Sum P(3) = 3.8e-27
 Identities = 30/59 (50%), Positives = 41/59 (69%)

Query:    38 ATIMKGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK 96
             A  + G I++H++Y EGAA+KD RL  GDQILE+ G D R+ TH +A+  LR TP K +
Sbjct:  1652 ADTLLGAIIIHEVYEEGAASKDGRLWAGDQILEVNGIDLRSATHDEAINVLRQTPQKVR 1710

GO:0005923 "tight junction" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0016327 "apicolateral plasma membrane" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0043220 "Schmidt-Lanterman incisure" evidence=IEA

MGI|MGI:1277960 Inadl "InaD-like (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 144 (55.7 bits), Expect = 5.9e-27, Sum P(3) = 5.9e-27
 Identities = 27/52 (51%), Positives = 38/52 (73%)

Query:    45 ILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK 96
             I++H++Y EGAAA+D RL  GDQILE+ G D R+ +H +A+  LR TP K +
Sbjct:  1497 IVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRSSSHEEAITALRQTPQKVR 1548

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005923 "tight junction" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0043234 "protein complex" evidence=ISO

GO:0045177 "apical part of cell" evidence=IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

UNIPROTKB|F1MMT3 F1MMT3 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 146 (56.5 bits), Expect = 6.7e-27, Sum P(3) = 6.7e-27
 Identities = 28/54 (51%), Positives = 37/54 (68%)

Query:    43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK 96
             G I++H++Y EGAA KD RL  GDQILE+ G D R  TH +A+  LR TP + +
Sbjct:  1667 GAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQTPQRVR 1720

GO:0043220 "Schmidt-Lanterman incisure" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0016327 "apicolateral plasma membrane" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0005923 "tight junction" evidence=IEA

UNIPROTKB|O75970 MPDZ "Multiple PDZ domain protein" [Homo sapiens (taxid:9606)]

 Score = 146 (56.5 bits), Expect = 1.8e-26, Sum P(3) = 1.8e-26
 Identities = 28/54 (51%), Positives = 37/54 (68%)

Query:    43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK 96
             G I++H++Y EGAA KD RL  GDQILE+ G D R  TH +A+  LR TP + +
Sbjct:  1652 GAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQTPQRVR 1705

GO:0019048 "virus-host interaction" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0042552 "myelination" evidence=IEA

GO:0043220 "Schmidt-Lanterman incisure" evidence=IEA

GO:0005923 "tight junction" evidence=IEA

GO:0014069 "postsynaptic density" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IPI

GO:0016327 "apicolateral plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|F1MAD2 Inadl2 "Protein Inadl2" [Rattus norvegicus (taxid:10116)]

 Score = 144 (55.7 bits), Expect = 3.1e-26, Sum P(3) = 3.1e-26
 Identities = 27/52 (51%), Positives = 38/52 (73%)

Query:    45 ILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK 96
             I++H++Y EGAAA+D RL  GDQILE+ G D R+ +H +A+  LR TP K +
Sbjct:  1496 IVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRSSSHEEAITALRQTPQKVR 1547

GO:0005923 "tight junction" evidence=IEA

GO:0045177 "apical part of cell" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

RGD|3105 Mpdz "multiple PDZ domain protein" [Rattus norvegicus (taxid:10116)]

 Score = 146 (56.5 bits), Expect = 1.2e-25, Sum P(3) = 1.2e-25
 Identities = 28/54 (51%), Positives = 37/54 (68%)

Query:    43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK 96
             G I++H++Y EGAA KD RL  GDQILE+ G D R  TH +A+  LR TP + +
Sbjct:  1636 GAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQTPQRVR 1689

GO:0005737 "cytoplasm" evidence=ISO

GO:0005923 "tight junction" evidence=IEA;ISO

GO:0007155 "cell adhesion" evidence=IEA;ISO

GO:0008022 "protein C-terminus binding" evidence=IEA;ISO

GO:0012505 "endomembrane system" evidence=IEA

GO:0014069 "postsynaptic density" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA;ISO

GO:0016327 "apicolateral plasma membrane" evidence=IEA;ISO

GO:0031410 "cytoplasmic vesicle" evidence=IEA;ISO

GO:0035556 "intracellular signal transduction" evidence=TAS

GO:0042552 "myelination" evidence=IPI

GO:0043220 "Schmidt-Lanterman incisure" evidence=IEA;ISO

GO:0045211 "postsynaptic membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	175
cd00992	82	cd00992, PDZ_signaling, PDZ domain found in a vari	3e-09
cd00992	82	cd00992, PDZ_signaling, PDZ domain found in a vari	3e-07
cd00136	70	cd00136, PDZ, PDZ domain, also called DHR (Dlg hom	2e-06
smart00228	85	smart00228, PDZ, Domain present in PSD-95, Dlg, an	4e-06
smart00228	85	smart00228, PDZ, Domain present in PSD-95, Dlg, an	6e-06
pfam00595	80	pfam00595, PDZ, PDZ domain (Also known as DHR or G	2e-05
pfam00595	80	pfam00595, PDZ, PDZ domain (Also known as DHR or G	4e-05
cd00136	70	cd00136, PDZ, PDZ domain, also called DHR (Dlg hom	8e-05
TIGR02038	351	TIGR02038, protease_degS, periplasmic serine pepet	0.003

>gnl|CDD|238492 cd00992, PDZ_signaling, PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements

 Score = 51.0 bits (123), Expect = 3e-09
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
           GGI V  + P G A +   L+ GD+ILE+ G     +TH +A+  L+
Sbjct: 25 GGGIFVSRVEPGGPAER-GGLRVGDRILEVNGVSVEGLTHEEAVELLK 71

May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases. Length = 82

>gnl|CDD|238492 cd00992, PDZ_signaling, PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements

 Score = 45.6 bits (109), Expect = 3e-07
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
           PGG A   G L  GD+I+ V+G  V   + EE   ++K 
Sbjct: 34 EPGGPAE-RGGLRVGDRILEVNGVSVEGLTHEEAVELLKN 72

May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases. Length = 82

>gnl|CDD|238080 cd00136, PDZ, PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif)

 Score = 43.4 bits (103), Expect = 2e-06
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 36 EVATIMKGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
           +    +GG++V  + P   A + A L+ GD IL + G D +N+T       L+
Sbjct: 6  SIRGGTEGGVVVLSVEPGSPAER-AGLQAGDVILAVNGTDVKNLTLEDVAELLK 58

Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(post synaptic density protein), DlgA (Drosophila disc large tumor suppressor), and ZO1, a mammalian tight junction protein. Length = 70

>gnl|CDD|214570 smart00228, PDZ, Domain present in PSD-95, Dlg, and ZO-1/2

 Score = 42.8 bits (101), Expect = 4e-06
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
          VPG  AA  G L  GD I+ V+GT V   +  E   ++K  
Sbjct: 34 VPGSPAAKAG-LRVGDVILEVNGTSVEGLTHLEAVDLLKKA 73

Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities. Length = 85

>gnl|CDD|214570 smart00228, PDZ, Domain present in PSD-95, Dlg, and ZO-1/2

 Score = 42.4 bits (100), Expect = 6e-06
 Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
           GG++V  + P   AAK A L+ GD ILE+ G     +TH +A+  L+
Sbjct: 25 GGGVVVSSVVPGSPAAK-AGLRVGDVILEVNGTSVEGLTHLEAVDLLK 71

Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities. Length = 85

>gnl|CDD|201332 pfam00595, PDZ, PDZ domain (Also known as DHR or GLGF)

 Score = 41.1 bits (97), Expect = 2e-05
 Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 1/40 (2%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
          +PGG A   G L +GD+I+S++G D+ + S +E    +KG
Sbjct: 32 LPGGAAEAGG-LQEGDRILSINGQDLENLSHDEAVLALKG 70

PDZ domains are found in diverse signaling proteins. Length = 80

>gnl|CDD|201332 pfam00595, PDZ, PDZ domain (Also known as DHR or GLGF)

 Score = 39.9 bits (94), Expect = 4e-05
 Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
            GI V ++ P GAA     L+ GD+IL + G+D  N++H +A+  L+
Sbjct: 23 DPGIFVSEVLPGGAAEAGG-LQEGDRILSINGQDLENLSHDEAVLALK 69

PDZ domains are found in diverse signaling proteins. Length = 80

>gnl|CDD|238080 cd00136, PDZ, PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif)

 Score = 38.8 bits (91), Expect = 8e-05
 Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 1/39 (2%)

Query: 5  PGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
          PG  A   G L  GD I++V+GTDV++ + E+VA ++K 
Sbjct: 22 PGSPAERAG-LQAGDVILAVNGTDVKNLTLEDVAELLKK 59

Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(post synaptic density protein), DlgA (Drosophila disc large tumor suppressor), and ZO1, a mammalian tight junction protein. Length = 70

>gnl|CDD|233696 TIGR02038, protease_degS, periplasmic serine pepetdase DegS

 Score = 36.7 bits (85), Expect = 0.003
 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 3/64 (4%)

Query: 12  DGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGGILVHDIYPEGAAAKDARLKFGDQILEL 71
           DGR+++G   + V G D+     + +      GI++  + P G AA+ A +   D IL+ 
Sbjct: 249 DGRVIRG--YIGVSGEDINSVVAQGLGLPDLRGIVITGVDPNGPAAR-AGILVRDVILKY 305

Query: 72  TGED 75
            G+D
Sbjct: 306 DGKD 309

This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E) [Protein fate, Degradation of proteins, peptides, and glycopeptides, Regulatory functions, Protein interactions]. Length = 351

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	175
KOG3209|consensus	984		99.95
KOG3209|consensus	984		99.81
PRK10779	449	zinc metallopeptidase RseP; Provisional	99.61
KOG3580|consensus	1027		99.61
TIGR00054	420	RIP metalloprotease RseP. A model that detects fra	99.6
KOG3580|consensus	1027		99.5
PRK10139	455	serine endoprotease; Provisional	99.49
TIGR02037	428	degP_htrA_DO periplasmic serine protease, Do/DeqQ	99.49
PRK10942	473	serine endoprotease; Provisional	99.46
PF00595	81	PDZ: PDZ domain (Also known as DHR or GLGF) Coordi	99.35
KOG3605|consensus	829		99.27
KOG3550|consensus	207		99.14
cd00136	70	PDZ PDZ domain, also called DHR (Dlg homologous re	99.07
KOG3605|consensus	829		99.07
KOG3553|consensus	124		99.06
cd00988	85	PDZ_CTP_protease PDZ domain of C-terminal processi	99.03
PF13180	82	PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_	99.03
smart00228	85	PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Als	99.0
cd00992	82	PDZ_signaling PDZ domain found in a variety of Eum	98.96
PF00595	81	PDZ: PDZ domain (Also known as DHR or GLGF) Coordi	98.87
cd00991	79	PDZ_archaeal_metalloprotease PDZ domain of archaea	98.87
TIGR02037	428	degP_htrA_DO periplasmic serine protease, Do/DeqQ	98.76
KOG3551|consensus	506		98.72
cd00986	79	PDZ_LON_protease PDZ domain of ATP-dependent LON s	98.72
cd00989	79	PDZ_metalloprotease PDZ domain of bacterial and pl	98.72
cd00987	90	PDZ_serine_protease PDZ domain of tryspin-like ser	98.7
PLN00049	389	carboxyl-terminal processing protease; Provisional	98.67
COG0793	406	Prc Periplasmic protease [Cell envelope biogenesis	98.65
cd00990	80	PDZ_glycyl_aminopeptidase PDZ domain associated wi	98.65
KOG3549|consensus	505		98.64
KOG1892|consensus	1629		98.64
cd00136	70	PDZ PDZ domain, also called DHR (Dlg homologous re	98.64
TIGR00225	334	prc C-terminal peptidase (prc). A C-terminal pepti	98.6
PRK10139	455	serine endoprotease; Provisional	98.54
TIGR03279	433	cyano_FeS_chp putative FeS-containing Cyanobacteri	98.47
PRK10942	473	serine endoprotease; Provisional	98.46
PRK11186	667	carboxy-terminal protease; Provisional	98.46
KOG3571|consensus	626		98.41
KOG3550|consensus	207		98.41
PRK10779	449	zinc metallopeptidase RseP; Provisional	98.4
cd00992	82	PDZ_signaling PDZ domain found in a variety of Eum	98.36
cd00988	85	PDZ_CTP_protease PDZ domain of C-terminal processi	98.32
TIGR02038	351	protease_degS periplasmic serine pepetdase DegS. T	98.31
TIGR01713	259	typeII_sec_gspC general secretion pathway protein	98.29
KOG3606|consensus	358		98.27
PRK10898	353	serine endoprotease; Provisional	98.26
KOG3552|consensus	1298		98.25
smart00228	85	PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Als	98.24
PF04495	138	GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro:	98.23
PF13180	82	PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_	98.2
KOG3651|consensus	429		98.19
TIGR02860	402	spore_IV_B stage IV sporulation protein B. SpoIVB,	98.16
KOG3553|consensus	124		98.14
cd00991	79	PDZ_archaeal_metalloprotease PDZ domain of archaea	98.04
KOG4407|consensus	1973		97.99
cd00989	79	PDZ_metalloprotease PDZ domain of bacterial and pl	97.99
PF12812	78	PDZ_1: PDZ-like domain	97.91
TIGR00054	420	RIP metalloprotease RseP. A model that detects fra	97.91
cd00990	80	PDZ_glycyl_aminopeptidase PDZ domain associated wi	97.86
KOG3542|consensus	1283		97.86
KOG0609|consensus	542		97.84
KOG3129|consensus	231		97.79
cd00987	90	PDZ_serine_protease PDZ domain of tryspin-like ser	97.78
KOG3651|consensus	429		97.77
TIGR00225	334	prc C-terminal peptidase (prc). A C-terminal pepti	97.77
KOG1892|consensus	1629		97.77
PLN00049	389	carboxyl-terminal processing protease; Provisional	97.76
cd00986	79	PDZ_LON_protease PDZ domain of ATP-dependent LON s	97.68
TIGR03279	433	cyano_FeS_chp putative FeS-containing Cyanobacteri	97.66
COG0793	406	Prc Periplasmic protease [Cell envelope biogenesis	97.64
COG3480	342	SdrC Predicted secreted protein containing a PDZ d	97.61
KOG3551|consensus	506		97.55
KOG4371|consensus	1332		97.51
PF14685	88	Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6	97.49
KOG3571|consensus	626		97.46
KOG1421|consensus	955		97.45
KOG3834|consensus	462		97.39
PRK11186	667	carboxy-terminal protease; Provisional	97.37
TIGR01713	259	typeII_sec_gspC general secretion pathway protein	97.36
KOG3552|consensus	1298		97.31
COG0265	347	DegQ Trypsin-like serine proteases, typically peri	97.23
KOG3938|consensus	334		97.22
PRK09681	276	putative type II secretion protein GspC; Provision	97.2
KOG1421|consensus	955		97.19
KOG4371|consensus	1332		97.06
KOG3606|consensus	358		97.01
KOG0606|consensus	1205		96.94
TIGR02038	351	protease_degS periplasmic serine pepetdase DegS. T	96.92
PRK10898	353	serine endoprotease; Provisional	96.88
KOG0609|consensus	542		96.87
COG3975	558	Predicted protease with the C-terminal PDZ domain	96.79
KOG1320|consensus	473		96.76
KOG3549|consensus	505		96.65
TIGR02860	402	spore_IV_B stage IV sporulation protein B. SpoIVB,	96.63
KOG3834|consensus	462		96.48
KOG3542|consensus	1283		96.44
COG3975	558	Predicted protease with the C-terminal PDZ domain	95.67
PF04495	138	GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro:	95.56
KOG0606|consensus	1205		95.45
KOG3532|consensus	1051		95.38
COG0265	347	DegQ Trypsin-like serine proteases, typically peri	95.33
KOG3532|consensus	1051		95.18
KOG3129|consensus	231		94.95
COG3031	275	PulC Type II secretory pathway, component PulC [In	94.22
PRK09681	276	putative type II secretion protein GspC; Provision	94.21
KOG1320|consensus	473		93.89
KOG1738|consensus	638		93.82
PF14685	88	Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6	92.82
COG3031	275	PulC Type II secretory pathway, component PulC [In	91.01
KOG1738|consensus	638		89.44
COG0750	375	Predicted membrane-associated Zn-dependent proteas	89.32
COG0750	375	Predicted membrane-associated Zn-dependent proteas	88.17
COG3480	342	SdrC Predicted secreted protein containing a PDZ d	86.87
KOG3938|consensus	334		85.53
PF07591	130	PT-HINT: Pretoxin HINT domain; InterPro: IPR011451	84.65
PF12812	78	PDZ_1: PDZ-like domain	83.41

>KOG3209|consensus

Probab=99.95  E-value=2.8e-27  Score=199.40  Aligned_cols=173  Identities=27%  Similarity=0.406  Sum_probs=129.3

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC--------------------------------------
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG--------------------------------------   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~--------------------------------------   43 (175)
                      .|+|.|+|++||||+.||.|++|+|.+|...+|.+++.++..                                      
T Consensus       680 ~Iv~lGaAe~DGRL~~gDElv~iDG~pV~GksH~~vv~Lm~~AArnghV~LtVRRkv~~~~~~rsp~~s~~~~~~yDV~l  759 (984)
T KOG3209|consen  680 AIVPLGAAEEDGRLREGDELVCIDGIPVEGKSHSEVVDLMEAAARNGHVNLTVRRKVRTGPARRSPRNSAAPSGPYDVVL  759 (984)
T ss_pred             eeeecccccccCcccCCCeEEEecCeeccCccHHHHHHHHHHHHhcCceEEEEeeeeeeccccCCcccccCCCCCeeeEE
Confidence            478999999999999999999999999999999999999841                                      


Q ss_pred             -------------------CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCCCCCCCCCCCC
Q psy1521          44 -------------------GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKPCPTVPSE  104 (175)
Q Consensus        44 -------------------gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~~~~~~~~~~~  104 (175)
                                         +.-|.+|++||||+++|+|++||+|++|||+++.+++|.+.+++||.++..++++..++.+
T Consensus       760 hR~ENeGFGFVi~sS~~kp~sgiGrIieGSPAdRCgkLkVGDrilAVNG~sI~~lsHadiv~LIKdaGlsVtLtIip~ee  839 (984)
T KOG3209|consen  760 HRKENEGFGFVIMSSQNKPESGIGRIIEGSPADRCGKLKVGDRILAVNGQSILNLSHADIVSLIKDAGLSVTLTIIPPEE  839 (984)
T ss_pred             ecccCCceeEEEEecccCCCCCccccccCChhHhhccccccceEEEecCeeeeccCchhHHHHHHhcCceEEEEEcChhc
Confidence                               1227799999999999999999999999999999999999999999999998877665544


Q ss_pred             CCCCCCCC-----Ccccceeeeee--eeeecccCCC----------------CCCCCCceEEEEEEeCCCCCcCEEEEcC
Q psy1521         105 PNANATTG-----EKTTFYFHFQV--KLVVLRDTVT----------------KEDDLLEFVDVELTKKAGKGFGLSLVGR  161 (175)
Q Consensus       105 ~~~~~~~~-----~~~~~~~~~~v--~l~v~r~~~~----------------~~~~~~~~~~v~l~k~~~~~lGfsi~gg  161 (175)
                      .....++.     .+.....++..  .+.-.|+.-.                ........++|+|+ ++..||||||+||
T Consensus       840 ~~~~~~~~sa~~~s~~t~~~~~~q~~glp~~~~s~~~~~pqpdt~~~~~~~~r~~qn~~~~~VelE-rG~kGFGFSiRGG  918 (984)
T KOG3209|consen  840 AGPPTSMTSAEKQSPFTQNGPYEQQYGLPGPRPSVYEEHPQPDTFQGLSINDRMSQNGDLYTVELE-RGAKGFGFSIRGG  918 (984)
T ss_pred             cCCCCCCcchhhcCcccccCCHhHccCCCCCCccccccCCCCccccceeccccccccCCeeEEEee-ccccccceEeecc
Confidence            32211110     11111111111  1111110000                11122368999999 6779999999999


Q ss_pred             c-CCCceEEEeccCC
Q psy1521         162 K-QGPGVFISDLVSE  175 (175)
Q Consensus       162 ~-~~~gi~I~~i~~~  175 (175)
                      + ++.++||.++..+
T Consensus       919 reynM~LfVLRlAeD  933 (984)
T KOG3209|consen  919 REYNMDLFVLRLAED  933 (984)
T ss_pred             cccccceEEEEeccC
Confidence            7 8899999988653

>KOG3209|consensus

Probab=99.81  E-value=1.1e-19  Score=153.85  Aligned_cols=93  Identities=29%  Similarity=0.586  Sum_probs=89.4

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC--------------------------------------
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG--------------------------------------   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~--------------------------------------   43 (175)
                      +|++||||++.|+|+.||+|++|||+++.+++|.+.+.+++.                                      
T Consensus       784 rIieGSPAdRCgkLkVGDrilAVNG~sI~~lsHadiv~LIKdaGlsVtLtIip~ee~~~~~~~~sa~~~s~~t~~~~~~q  863 (984)
T KOG3209|consen  784 RIIEGSPADRCGKLKVGDRILAVNGQSILNLSHADIVSLIKDAGLSVTLTIIPPEEAGPPTSMTSAEKQSPFTQNGPYEQ  863 (984)
T ss_pred             ccccCChhHhhccccccceEEEecCeeeeccCchhHHHHHHhcCceEEEEEcChhccCCCCCCcchhhcCcccccCCHhH
Confidence            689999999999999999999999999999999999999961                                      


Q ss_pred             ------------------------------------------------------------CeEEEEecCCCcccccCCcC
Q psy1521          44 ------------------------------------------------------------GILVHDIYPEGAAAKDARLK   63 (175)
Q Consensus        44 ------------------------------------------------------------gi~V~~v~~gg~A~~~G~L~   63 (175)
                                                                                  ++||.++..+|||.++|+++
T Consensus       864 ~~glp~~~~s~~~~~pqpdt~~~~~~~~r~~qn~~~~~VelErG~kGFGFSiRGGreynM~LfVLRlAeDGPA~rdGrm~  943 (984)
T KOG3209|consen  864 QYGLPGPRPSVYEEHPQPDTFQGLSINDRMSQNGDLYTVELERGAKGFGFSIRGGREYNMDLFVLRLAEDGPAIRDGRMR  943 (984)
T ss_pred             ccCCCCCCccccccCCCCccccceeccccccccCCeeEEEeeccccccceEeecccccccceEEEEeccCCCccccCcee
Confidence                                                                        68999999999999999999


Q ss_pred             CCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          64 FGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        64 ~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      +||+|++|||++..+++|..|.++||+.+..
T Consensus       944 VGDqi~eINGesTkgmtH~rAIelIk~gg~~  974 (984)
T KOG3209|consen  944 VGDQITEINGESTKGMTHDRAIELIKQGGRR  974 (984)
T ss_pred             ecceEEEecCcccCCCcHHHHHHHHHhCCeE
Confidence            9999999999999999999999999998877

>PRK10779 zinc metallopeptidase RseP; Provisional

Probab=99.61  E-value=1.1e-14  Score=122.56  Aligned_cols=89  Identities=24%  Similarity=0.378  Sum_probs=71.6

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHH-HHHHh-----------hC--------------------------
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEE-VATIM-----------KG--------------------------   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~-~~~~l-----------~~--------------------------   43 (175)
                      .|.|+|||+++| ||+||+|++|||+++.+++.-. .+...           ++                          
T Consensus       132 ~V~~~SpA~kAG-Lk~GDvI~~vnG~~V~~~~~l~~~v~~~~~g~~v~v~v~R~gk~~~~~v~l~~~~~~~~~~~~~~~~  210 (449)
T PRK10779        132 EIAPNSIAAQAQ-IAPGTELKAVDGIETPDWDAVRLALVSKIGDESTTITVAPFGSDQRRDKTLDLRHWAFEPDKQDPVS  210 (449)
T ss_pred             ccCCCCHHHHcC-CCCCCEEEEECCEEcCCHHHHHHHHHhhccCCceEEEEEeCCccceEEEEecccccccCccccchhh
Confidence            588999999999 9999999999999999885421 11000           00                          


Q ss_pred             -----------CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          44 -----------GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        44 -----------gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                                 +..|..|.++|||+++| |++||+|++|||+.+.  ++++..+.++...+.
T Consensus       211 ~lGl~~~~~~~~~vV~~V~~~SpA~~AG-L~~GDvIl~Ing~~V~--s~~dl~~~l~~~~~~  269 (449)
T PRK10779        211 SLGIRPRGPQIEPVLAEVQPNSAASKAG-LQAGDRIVKVDGQPLT--QWQTFVTLVRDNPGK  269 (449)
T ss_pred             cccccccCCCcCcEEEeeCCCCHHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhCCCC
Confidence                       26799999999999999 9999999999999995  568888888764433

>KOG3580|consensus

Probab=99.61  E-value=1.4e-15  Score=127.57  Aligned_cols=54  Identities=30%  Similarity=0.404  Sum_probs=50.7

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCCCCC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKP   97 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~~~~   97 (175)
                      -|||+++...|.|+++|+|+.||.||.|||...++++..++..+|.+...++++
T Consensus       220 qIFvKeit~~gLAardgnlqEGDiiLkINGtvteNmSLtDar~LIEkS~GKL~l  273 (1027)
T KOG3580|consen  220 QIFVKEITRTGLAARDGNLQEGDIILKINGTVTENMSLTDARKLIEKSRGKLQL  273 (1027)
T ss_pred             hhhhhhhcccchhhccCCcccccEEEEECcEeeccccchhHHHHHHhccCceEE
Confidence            589999999999999999999999999999999999999999999998888553

>TIGR00054 RIP metalloprotease RseP

Probab=99.60  E-value=1.6e-14  Score=120.53  Aligned_cols=89  Identities=26%  Similarity=0.385  Sum_probs=72.4

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHH-HHHHhh----------------------------CCeEEEEecC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEE-VATIMK----------------------------GGILVHDIYP   52 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~-~~~~l~----------------------------~gi~V~~v~~   52 (175)
                      .|.|+|||+++| |++||.|++|||..+.++.+-. .+....                            .++.|..|.+
T Consensus       134 ~V~~~SpA~~AG-L~~GDvI~~vng~~v~~~~dl~~~ia~~~~~v~~~I~r~g~~~~l~v~l~~~~~~~~~g~vV~~V~~  212 (420)
T TIGR00054       134 LLDKNSIALEAG-IEPGDEILSVNGNKIPGFKDVRQQIADIAGEPMVEILAERENWTFEVMKELIPRGPKIEPVLSDVTP  212 (420)
T ss_pred             ccCCCCHHHHcC-CCCCCEEEEECCEEcCCHHHHHHHHHhhcccceEEEEEecCceEecccccceecCCCcCcEEEEECC
Confidence            578999999999 9999999999999998875421 111110                            1468999999


Q ss_pred             CCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          53 EGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        53 gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      +|||+++| |++||+|++|||+++.  ++++....++.....
T Consensus       213 ~SpA~~aG-L~~GD~Iv~Vng~~V~--s~~dl~~~l~~~~~~  251 (420)
T TIGR00054       213 NSPAEKAG-LKEGDYIQSINGEKLR--SWTDFVSAVKENPGK  251 (420)
T ss_pred             CCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHhCCCC
Confidence            99999999 9999999999999995  478888888764443

A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.

>KOG3580|consensus

Probab=99.50  E-value=1.2e-13  Score=116.19  Aligned_cols=50  Identities=34%  Similarity=0.525  Sum_probs=47.3

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      ||||..|..|+||++.| |+.||+||.||..++.++..++|+..|-..+..
T Consensus       430 GIFVaGvqegspA~~eG-lqEGDQIL~VN~vdF~nl~REeAVlfLL~lPkG  479 (1027)
T KOG3580|consen  430 GIFVAGVQEGSPAEQEG-LQEGDQILKVNTVDFRNLVREEAVLFLLELPKG  479 (1027)
T ss_pred             eEEEeecccCCchhhcc-ccccceeEEeccccchhhhHHHHHHHHhcCCCC
Confidence            89999999999999999 999999999999999999999999998876655

>PRK10139 serine endoprotease; Provisional

Probab=99.49  E-value=3.4e-13  Score=113.58  Aligned_cols=89  Identities=21%  Similarity=0.312  Sum_probs=72.9

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHH-HHHHHhh--------------------------------------
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQE-EVATIMK--------------------------------------   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~-~~~~~l~--------------------------------------   42 (175)
                      .|.|+|||+++| |+.||+|++|||+++.+|..- .++...+                                      
T Consensus       296 ~V~~~SpA~~AG-L~~GDvIl~InG~~V~s~~dl~~~l~~~~~g~~v~l~V~R~G~~~~l~v~~~~~~~~~~~~~~~~~~  374 (455)
T PRK10139        296 EVLPNSGSAKAG-VKAGDIITSLNGKPLNSFAELRSRIATTEPGTKVKLGLLRNGKPLEVEVTLDTSTSSSASAEMITPA  374 (455)
T ss_pred             EECCCChHHHCC-CCCCCEEEEECCEECCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEECCCCCccccccccccc
Confidence            578999999999 999999999999999988642 2222110                                      


Q ss_pred             ---------------CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 ---------------GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ---------------~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                                     .|++|..|.++|||+++| |++||+|++|||+.+.  ++++...++++.+..
T Consensus       375 ~~g~~l~~~~~~~~~~Gv~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~--~~~~~~~~l~~~~~~  438 (455)
T PRK10139        375 LQGATLSDGQLKDGTKGIKIDEVVKGSPAAQAG-LQKDDVIIGVNRDRVN--SIAEMRKVLAAKPAI  438 (455)
T ss_pred             ccccEecccccccCCCceEEEEeCCCChHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhCCCe
Confidence                           146799999999999999 9999999999999995  578888888875433

>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family

Probab=99.49  E-value=2.4e-13  Score=113.83  Aligned_cols=86  Identities=27%  Similarity=0.421  Sum_probs=71.8

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCH-HHHHHHhh--------------------------------------
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQ-EEVATIMK--------------------------------------   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~-~~~~~~l~--------------------------------------   42 (175)
                      .|.|+|||+++| |+.||+|++|||..+.++.+ .+++....                                      
T Consensus       263 ~V~~~spA~~aG-L~~GDvI~~Vng~~i~~~~~~~~~l~~~~~g~~v~l~v~R~g~~~~~~v~l~~~~~~~~~~~~~~lG  341 (428)
T TIGR02037       263 QVLPGSPAEKAG-LKAGDVILSVNGKPISSFADLRRAIGTLKPGKKVTLGILRKGKEKTITVTLGASPEEQASSSNPFLG  341 (428)
T ss_pred             EccCCCChHHcC-CCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEECcCCCccccccccccc
Confidence            578999999999 99999999999999998753 22222110                                      


Q ss_pred             --------------------CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcC
Q psy1521          43 --------------------GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLT   91 (175)
Q Consensus        43 --------------------~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~   91 (175)
                                          .|++|..|.++|+|+++| |++||+|++|||+.+.  +.++..+++++.
T Consensus       342 i~~~~l~~~~~~~~~l~~~~~Gv~V~~V~~~SpA~~aG-L~~GDvI~~Ing~~V~--s~~d~~~~l~~~  407 (428)
T TIGR02037       342 LTVANLSPEIRKELRLKGDVKGVVVTKVVSGSPAARAG-LQPGDVILSVNQQPVS--SVAELRKVLDRA  407 (428)
T ss_pred             eEEecCCHHHHHHcCCCcCcCceEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhc
Confidence                                268999999999999999 9999999999999996  468888888864

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.

>PRK10942 serine endoprotease; Provisional

Probab=99.46  E-value=6.2e-13  Score=112.50  Aligned_cols=89  Identities=27%  Similarity=0.384  Sum_probs=72.8

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHH-HHHHHhh--------------------------------------
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQE-EVATIMK--------------------------------------   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~-~~~~~l~--------------------------------------   42 (175)
                      .|.|+|||+++| |+.||.|++|||..+.++..- .++....                                      
T Consensus       317 ~V~~~SpA~~AG-L~~GDvIl~InG~~V~s~~dl~~~l~~~~~g~~v~l~v~R~G~~~~v~v~l~~~~~~~~~~~~~~lG  395 (473)
T PRK10942        317 QVLPNSSAAKAG-IKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKPVNVNVELQQSSQNQVDSSNIFNG  395 (473)
T ss_pred             EECCCChHHHcC-CCCCCEEEEECCEECCCHHHHHHHHHhcCCCCEEEEEEEECCeEEEEEEEeCcCccccccccccccc
Confidence            578999999999 999999999999999987531 2221110                                      


Q ss_pred             ------------CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 ------------GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ------------~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                                  .|++|..|.++|+|+++| |++||+|++|||+.+.+  .++..+++++.+..
T Consensus       396 l~g~~l~~~~~~~gvvV~~V~~~S~A~~aG-L~~GDvIv~VNg~~V~s--~~dl~~~l~~~~~~  456 (473)
T PRK10942        396 IEGAELSNKGGDKGVVVDNVKPGTPAAQIG-LKKGDVIIGANQQPVKN--IAELRKILDSKPSV  456 (473)
T ss_pred             ceeeecccccCCCCeEEEEeCCCChHHHcC-CCCCCEEEEECCEEcCC--HHHHHHHHHhCCCe
Confidence                        147799999999999999 99999999999999965  68888888875533

>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]

Probab=99.35  E-value=1.6e-12  Score=84.36  Aligned_cols=51  Identities=29%  Similarity=0.610  Sum_probs=48.9

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .++||..|.++|+|+++| |++||+|++|||+++.+++|.+++.+++.+...
T Consensus        25 ~~~~V~~v~~~~~a~~~g-l~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~   75 (81)
T PF00595_consen   25 KGVFVSSVVPGSPAERAG-LKVGDRILEINGQSVRGMSHDEVVQLLKSASNP   75 (81)
T ss_dssp             EEEEEEEECTTSHHHHHT-SSTTEEEEEETTEESTTSBHHHHHHHHHHSTSE
T ss_pred             CCEEEEEEeCCChHHhcc-cchhhhhheeCCEeCCCCCHHHHHHHHHCCCCc
Confidence            378999999999999999 999999999999999999999999999998877

PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....

>KOG3605|consensus

Probab=99.27  E-value=9.8e-12  Score=105.34  Aligned_cols=90  Identities=31%  Similarity=0.538  Sum_probs=80.2

Q ss_pred             cCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC-------------------------------------Ce
Q psy1521           3 AVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG-------------------------------------GI   45 (175)
Q Consensus         3 v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~-------------------------------------gi   45 (175)
                      ...+|||++.|+|-.||+|++|||..+..+.-..+-..+++                                     ||
T Consensus       680 mm~~GpAarsgkLnIGDQiiaING~SLVGLPLstcQs~Ik~~KnQT~VkltiV~cpPV~~V~I~RPd~kyQLGFSVQNGi  759 (829)
T KOG3605|consen  680 MMHGGPAARSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQTAVKLNIVSCPPVTTVLIRRPDLRYQLGFSVQNGI  759 (829)
T ss_pred             cccCChhhhcCCccccceeEeecCceeccccHHHHHHHHhcccccceEEEEEecCCCceEEEeecccchhhccceeeCcE
Confidence            46799999999999999999999999999987766666652                                     54


Q ss_pred             EEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          46 LVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        46 ~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                       |-++..||.|+|.| +++|-||++|||+++-...|+..+++|.++-..
T Consensus       760 -ICSLlRGGIAERGG-VRVGHRIIEINgQSVVA~pHekIV~lLs~aVGE  806 (829)
T KOG3605|consen  760 -ICSLLRGGIAERGG-VRVGHRIIEINGQSVVATPHEKIVQLLSNAVGE  806 (829)
T ss_pred             -eehhhcccchhccC-ceeeeeEEEECCceEEeccHHHHHHHHHHhhhh
Confidence             66789999999998 999999999999999999999999999877665

>KOG3550|consensus

Probab=99.14  E-value=1.2e-10  Score=82.69  Aligned_cols=54  Identities=31%  Similarity=0.458  Sum_probs=51.2

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCCCCC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKP   97 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~~~~   97 (175)
                      +|||++|+|||.|++.|.|+.||++++|||.++++-.|+.|+.+||.+-..+++
T Consensus       116 piyisriipggvadrhgglkrgdqllsvngvsvege~hekavellkaa~gsvkl  169 (207)
T KOG3550|consen  116 PIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAVGSVKL  169 (207)
T ss_pred             ceEEEeecCCccccccCcccccceeEeecceeecchhhHHHHHHHHHhcCcEEE
Confidence            899999999999999999999999999999999999999999999999888443

>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif)

Probab=99.07  E-value=8.2e-10  Score=69.35  Aligned_cols=49  Identities=31%  Similarity=0.535  Sum_probs=46.4

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTP   92 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~   92 (175)
                      .+++|..|.+++||+.+| |++||+|++|||.++.+++++++.++++...
T Consensus        13 ~~~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~   61 (70)
T cd00136          13 GGVVVLSVEPGSPAERAG-LQAGDVILAVNGTDVKNLTLEDVAELLKKEV   61 (70)
T ss_pred             CCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhhCC
Confidence            378999999999999999 9999999999999999999999999999876

Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos

>KOG3605|consensus

Probab=99.07  E-value=7.9e-11  Score=99.97  Aligned_cols=83  Identities=18%  Similarity=0.353  Sum_probs=68.8

Q ss_pred             eEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCcccceeeeeee
Q psy1521          45 ILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKPCPTVPSEPNANATTGEKTTFYFHFQVK  124 (175)
Q Consensus        45 i~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  124 (175)
                      ++|.+...+|||+++|+|..||+|++|||.+|-+++...+..++|+.++..                          .|+
T Consensus       675 VViAnmm~~GpAarsgkLnIGDQiiaING~SLVGLPLstcQs~Ik~~KnQT--------------------------~Vk  728 (829)
T KOG3605|consen  675 VVIANMMHGGPAARSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQT--------------------------AVK  728 (829)
T ss_pred             HHHHhcccCChhhhcCCccccceeEeecCceeccccHHHHHHHHhcccccc--------------------------eEE
Confidence            457789999999999999999999999999999999999999999988873                          288


Q ss_pred             eeecccCCCCCCCCCceEEEEEEeC-CCCCcCEEEEcC
Q psy1521         125 LVVLRDTVTKEDDLLEFVDVELTKK-AGKGFGLSLVGR  161 (175)
Q Consensus       125 l~v~r~~~~~~~~~~~~~~v~l~k~-~~~~lGfsi~gg  161 (175)
                      |++.+..+.        .+|.+.+. -...|||++..|
T Consensus       729 ltiV~cpPV--------~~V~I~RPd~kyQLGFSVQNG  758 (829)
T KOG3605|consen  729 LNIVSCPPV--------TTVLIRRPDLRYQLGFSVQNG  758 (829)
T ss_pred             EEEecCCCc--------eEEEeecccchhhccceeeCc
Confidence            998876443        56666542 256799998764

>KOG3553|consensus

Probab=99.06  E-value=1.2e-10  Score=76.87  Aligned_cols=47  Identities=30%  Similarity=0.476  Sum_probs=45.4

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHc
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRL   90 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~   90 (175)
                      .|+||++|.+||||+.+| |+.+|.|+.+||.++.-++|++|+..|++
T Consensus        59 ~GiYvT~V~eGsPA~~AG-LrihDKIlQvNG~DfTMvTHd~Avk~i~k  105 (124)
T KOG3553|consen   59 KGIYVTRVSEGSPAEIAG-LRIHDKILQVNGWDFTMVTHDQAVKRITK  105 (124)
T ss_pred             ccEEEEEeccCChhhhhc-ceecceEEEecCceeEEEEhHHHHHHhhH
Confidence            499999999999999999 99999999999999999999999999987

>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts

Probab=99.03  E-value=3.1e-09  Score=69.26  Aligned_cols=51  Identities=27%  Similarity=0.517  Sum_probs=45.2

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .+++|..|.+++||+++| |++||+|++|||+.+.++++.++..+++.....
T Consensus        13 ~~~~V~~v~~~s~a~~~g-l~~GD~I~~vng~~i~~~~~~~~~~~l~~~~~~   63 (85)
T cd00988          13 GGLVITSVLPGSPAAKAG-IKAGDIIVAIDGEPVDGLSLEDVVKLLRGKAGT   63 (85)
T ss_pred             CeEEEEEecCCCCHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCC
Confidence            378999999999999999 999999999999999998889998888764333

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C

Probab=99.03  E-value=1.6e-09  Score=70.49  Aligned_cols=45  Identities=31%  Similarity=0.515  Sum_probs=38.9

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHc
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRL   90 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~   90 (175)
                      .+++|..|.++|||+++| |++||+|++|||..+.  +..+....+.+
T Consensus        14 ~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~--~~~~~~~~l~~   58 (82)
T PF13180_consen   14 GGVVVVSVIPGSPAAKAG-LQPGDIILAINGKPVN--SSEDLVNILSK   58 (82)
T ss_dssp             SSEEEEEESTTSHHHHTT-S-TTEEEEEETTEESS--SHHHHHHHHHC
T ss_pred             CeEEEEEeCCCCcHHHCC-CCCCcEEEEECCEEcC--CHHHHHHHHHh
Confidence            489999999999999999 9999999999999994  45777777753

...

>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2

Probab=99.00  E-value=2.3e-09  Score=69.44  Aligned_cols=51  Identities=39%  Similarity=0.646  Sum_probs=47.2

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .+++|..|.++++|+++| |++||+|++|||+.+.++++.+...+++..+..
T Consensus        26 ~~~~i~~v~~~s~a~~~g-l~~GD~I~~In~~~v~~~~~~~~~~~~~~~~~~   76 (85)
T smart00228       26 GGVVVSSVVPGSPAAKAG-LKVGDVILEVNGTSVEGLTHLEAVDLLKKAGGK   76 (85)
T ss_pred             CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCe
Confidence            489999999999999999 999999999999999999999999998886555

Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.

>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements

Probab=98.96  E-value=3.9e-09  Score=68.14  Aligned_cols=51  Identities=35%  Similarity=0.658  Sum_probs=47.2

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .+++|..|.++++|+++| |++||+|++|||.++.++++.++..+++.....
T Consensus        26 ~~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~~~~~~~~~~~l~~~~~~   76 (82)
T cd00992          26 GGIFVSRVEPGGPAERGG-LRVGDRILEVNGVSVEGLTHEEAVELLKNSGDE   76 (82)
T ss_pred             CCeEEEEECCCChHHhCC-CCCCCEEEEECCEEcCccCHHHHHHHHHhCCCe
Confidence            478999999999999988 999999999999999999999999999986554

May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.

>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]

Probab=98.87  E-value=2.8e-09  Score=69.02  Aligned_cols=41  Identities=39%  Similarity=0.695  Sum_probs=38.7

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      .|.|+|+|+++| |+.||+|++|||.++.++++.+++.+++.
T Consensus        31 ~v~~~~~a~~~g-l~~GD~Il~INg~~v~~~~~~~~~~~l~~   71 (81)
T PF00595_consen   31 SVVPGSPAERAG-LKVGDRILEINGQSVRGMSHDEVVQLLKS   71 (81)
T ss_dssp             EECTTSHHHHHT-SSTTEEEEEETTEESTTSBHHHHHHHHHH
T ss_pred             EEeCCChHHhcc-cchhhhhheeCCEeCCCCCHHHHHHHHHC
Confidence            578999999999 99999999999999999999999999874

PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....

>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

Probab=98.87  E-value=1.9e-08  Score=64.93  Aligned_cols=46  Identities=24%  Similarity=0.380  Sum_probs=41.1

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLT   91 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~   91 (175)
                      .|++|..|.+++||+++| |++||+|++|||+.+.  ++.+....++..
T Consensus        10 ~Gv~V~~V~~~spa~~aG-L~~GDiI~~Ing~~v~--~~~d~~~~l~~~   55 (79)
T cd00991          10 AGVVIVGVIVGSPAENAV-LHTGDVIYSINGTPIT--TLEDFMEALKPT   55 (79)
T ss_pred             CcEEEEEECCCChHHhcC-CCCCCEEEEECCEEcC--CHHHHHHHHhcC
Confidence            388999999999999999 9999999999999996  467888888764

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family

Probab=98.76  E-value=9e-08  Score=80.38  Aligned_cols=45  Identities=31%  Similarity=0.458  Sum_probs=39.3

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHc
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRL   90 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~   90 (175)
                      .|++|..|.++|||+++| |++||+|++|||+.+.+  +.+...++..
T Consensus       257 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Vng~~i~~--~~~~~~~l~~  301 (428)
T TIGR02037       257 RGALVAQVLPGSPAEKAG-LKAGDVILSVNGKPISS--FADLRRAIGT  301 (428)
T ss_pred             CceEEEEccCCCChHHcC-CCCCCEEEEECCEEcCC--HHHHHHHHHh
Confidence            489999999999999999 99999999999999964  5666666654

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.

>KOG3551|consensus

Probab=98.72  E-value=5.2e-09  Score=84.49  Aligned_cols=54  Identities=33%  Similarity=0.487  Sum_probs=51.5

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCCCCC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKP   97 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~~~~   97 (175)
                      +|.|++|++|-+|++.+.|..||.|++|||.++.+.||+||++.||+.+..+.+
T Consensus       111 PIlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqaLKraGkeV~l  164 (506)
T KOG3551|consen  111 PILISKIFKGLAADQTGALFLGDAILSVNGEDLRDATHDEAVQALKRAGKEVLL  164 (506)
T ss_pred             ceehhHhccccccccccceeeccEEEEecchhhhhcchHHHHHHHHhhCceeee
Confidence            789999999999999999999999999999999999999999999999998644

>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases

Probab=98.72  E-value=1.7e-07  Score=60.28  Aligned_cols=44  Identities=25%  Similarity=0.431  Sum_probs=38.6

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHc
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRL   90 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~   90 (175)
                      .|++|..|.++|||+. | |++||.|++|||..+.  ++++...+++.
T Consensus         8 ~Gv~V~~V~~~s~A~~-g-L~~GD~I~~Ing~~v~--~~~~~~~~l~~   51 (79)
T cd00986           8 HGVYVTSVVEGMPAAG-K-LKAGDHIIAVDGKPFK--EAEELIDYIQS   51 (79)
T ss_pred             cCEEEEEECCCCchhh-C-CCCCCEEEEECCEECC--CHHHHHHHHHh
Confidence            3789999999999996 8 9999999999999996  46778888875

Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

Probab=98.72  E-value=1e-07  Score=61.07  Aligned_cols=46  Identities=26%  Similarity=0.512  Sum_probs=40.2

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTP   92 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~   92 (175)
                      .++|..|.++++|+++| |++||+|++|||+.+.+  ++++...++...
T Consensus        13 ~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~~--~~~~~~~l~~~~   58 (79)
T cd00989          13 EPVIGEVVPGSPAAKAG-LKAGDRILAINGQKIKS--WEDLVDAVQENP   58 (79)
T ss_pred             CcEEEeECCCCHHHHcC-CCCCCEEEEECCEECCC--HHHHHHHHHHCC
Confidence            46899999999999999 99999999999999964  678888887653

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis

Probab=98.70  E-value=1.2e-07  Score=62.17  Aligned_cols=63  Identities=30%  Similarity=0.440  Sum_probs=47.3

Q ss_pred             CeeCCCCCHHHHHHH-h--hCCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcC
Q psy1521          26 GTDVRDKSQEEVATI-M--KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLT   91 (175)
Q Consensus        26 g~~v~~~~~~~~~~~-l--~~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~   91 (175)
                      |..+.+.++...... +  ..|++|..|.+++||+++| |++||+|++|||+.+.+  ..+...+++..
T Consensus         4 G~~~~~~~~~~~~~~~~~~~~g~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~i~~--~~~~~~~l~~~   69 (90)
T cd00987           4 GVTVQDLTPDLAEELGLKDTKGVLVASVDPGSPAAKAG-LKPGDVILAVNGKPVKS--VADLRRALAEL   69 (90)
T ss_pred             ceEEeECCHHHHHHcCCCCCCEEEEEEECCCCHHHHcC-CCcCCEEEEECCEECCC--HHHHHHHHHhc
Confidence            455555554433321 1  3489999999999999999 99999999999999965  46677777654

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>PLN00049 carboxyl-terminal processing protease; Provisional

Probab=98.67  E-value=1.1e-07  Score=78.97  Aligned_cols=50  Identities=26%  Similarity=0.411  Sum_probs=44.9

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      +++|..|.++|||+++| |++||+|++|||+++.+.+..++..+|+.....
T Consensus       103 g~~V~~V~~~SPA~~aG-l~~GD~Iv~InG~~v~~~~~~~~~~~l~g~~g~  152 (389)
T PLN00049        103 GLVVVAPAPGGPAARAG-IRPGDVILAIDGTSTEGLSLYEAADRLQGPEGS  152 (389)
T ss_pred             cEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCCCC
Confidence            68899999999999999 999999999999999998888988888764444

>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]

Probab=98.65  E-value=1.3e-07  Score=78.79  Aligned_cols=50  Identities=26%  Similarity=0.407  Sum_probs=47.3

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      ++.|.++.+++||+++| |++||+|+.|||.++.+++.++++..|+.....
T Consensus       113 ~~~V~s~~~~~PA~kag-i~~GD~I~~IdG~~~~~~~~~~av~~irG~~Gt  162 (406)
T COG0793         113 GVKVVSPIDGSPAAKAG-IKPGDVIIKIDGKSVGGVSLDEAVKLIRGKPGT  162 (406)
T ss_pred             CcEEEecCCCChHHHcC-CCCCCEEEEECCEEccCCCHHHHHHHhCCCCCC
Confidence            67899999999999999 999999999999999999999999999987776

>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases

Probab=98.65  E-value=1.3e-07  Score=60.75  Aligned_cols=35  Identities=23%  Similarity=0.241  Sum_probs=32.5

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRN   78 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~   78 (175)
                      +++.|..|.++|+|+++| |++||+|++|||+.+.+
T Consensus        12 ~~~~V~~V~~~s~a~~aG-l~~GD~I~~Ing~~v~~   46 (80)
T cd00990          12 GLGKVTFVRDDSPADKAG-LVAGDELVAVNGWRVDA   46 (80)
T ss_pred             CcEEEEEECCCChHHHhC-CCCCCEEEEECCEEhHH
Confidence            368999999999999999 99999999999999865

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>KOG3549|consensus

Probab=98.64  E-value=5.2e-08  Score=77.94  Aligned_cols=53  Identities=25%  Similarity=0.377  Sum_probs=51.3

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCCCC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK   96 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~~~   96 (175)
                      +++|++|..+..|+..|.|-+||-|+.|||+.++.++|+|++++|+++++.++
T Consensus        81 PvviSkI~kdQaAd~tG~LFvGDAilqvNGi~v~~c~HeevV~iLRNAGdeVt  133 (505)
T KOG3549|consen   81 PVVISKIYKDQAADITGQLFVGDAILQVNGIYVTACPHEEVVNILRNAGDEVT  133 (505)
T ss_pred             cEEeehhhhhhhhhhcCceEeeeeeEEeccEEeecCChHHHHHHHHhcCCEEE
Confidence            78999999999999999999999999999999999999999999999999965

>KOG1892|consensus

Probab=98.64  E-value=4.7e-08  Score=86.52  Aligned_cols=53  Identities=32%  Similarity=0.499  Sum_probs=51.2

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCCCC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK   96 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~~~   96 (175)
                      ||||++|.+||+|+.+|+|+.||++|+|||+++-+++.+.|..++-+.+..+.
T Consensus       961 GIYvKsVV~GgaAd~DGRL~aGDQLLsVdG~SLiGisQErAA~lmtrtg~vV~ 1013 (1629)
T KOG1892|consen  961 GIYVKSVVEGGAADHDGRLEAGDQLLSVDGHSLIGISQERAARLMTRTGNVVH 1013 (1629)
T ss_pred             ceEEEEeccCCccccccccccCceeeeecCcccccccHHHHHHHHhccCCeEE
Confidence            99999999999999999999999999999999999999999999999988864

>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif)

Probab=98.64  E-value=6.7e-08  Score=60.49  Aligned_cols=41  Identities=41%  Similarity=0.678  Sum_probs=37.9

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      .|.++|||+..| |++||+|++|||.++.+++++++.++++.
T Consensus        19 ~v~~~s~a~~~g-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~   59 (70)
T cd00136          19 SVEPGSPAERAG-LQAGDVILAVNGTDVKNLTLEDVAELLKK   59 (70)
T ss_pred             EeCCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhh
Confidence            578999999988 99999999999999999999999988875

Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos

>TIGR00225 prc C-terminal peptidase (prc)

Probab=98.60  E-value=2.8e-07  Score=75.05  Aligned_cols=50  Identities=22%  Similarity=0.393  Sum_probs=43.6

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      +++|..|.++|||+++| |++||+|++|||+.+.+++..++..+++.....
T Consensus        63 ~~~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~  112 (334)
T TIGR00225        63 EIVIVSPFEGSPAEKAG-IKPGDKIIKINGKSVAGMSLDDAVALIRGKKGT  112 (334)
T ss_pred             EEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhccCCCCC
Confidence            57899999999999999 999999999999999988777888777654333

A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.

>PRK10139 serine endoprotease; Provisional

Probab=98.54  E-value=1.2e-06  Score=74.12  Aligned_cols=45  Identities=27%  Similarity=0.483  Sum_probs=40.3

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHc
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRL   90 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~   90 (175)
                      .|++|..|.++|||+++| |++||+|++|||+.+.+  +.+....+..
T Consensus       290 ~Gv~V~~V~~~SpA~~AG-L~~GDvIl~InG~~V~s--~~dl~~~l~~  334 (455)
T PRK10139        290 RGAFVSEVLPNSGSAKAG-VKAGDIITSLNGKPLNS--FAELRSRIAT  334 (455)
T ss_pred             CceEEEEECCCChHHHCC-CCCCCEEEEECCEECCC--HHHHHHHHHh
Confidence            589999999999999999 99999999999999964  6787777765

>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase

Probab=98.47  E-value=8e-07  Score=73.95  Aligned_cols=74  Identities=19%  Similarity=0.290  Sum_probs=57.7

Q ss_pred             EEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCcccceeeeeeeee
Q psy1521          47 VHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKPCPTVPSEPNANATTGEKTTFYFHFQVKLV  126 (175)
Q Consensus        47 V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~  126 (175)
                      |..|.|+|+|+++| |++||+|++|||+.+.  ++.+....+.  ...                            +.+.
T Consensus         2 I~~V~pgSpAe~AG-Le~GD~IlsING~~V~--Dw~D~~~~l~--~e~----------------------------l~L~   48 (433)
T TIGR03279         2 ISAVLPGSIAEELG-FEPGDALVSINGVAPR--DLIDYQFLCA--DEE----------------------------LELE   48 (433)
T ss_pred             cCCcCCCCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHhc--CCc----------------------------EEEE
Confidence            67899999999999 9999999999999995  4567665553  233                            6777


Q ss_pred             ec-ccCCCCCCCCCceEEEEEEeCCCCCcCEEEEcC
Q psy1521         127 VL-RDTVTKEDDLLEFVDVELTKKAGKGFGLSLVGR  161 (175)
Q Consensus       127 v~-r~~~~~~~~~~~~~~v~l~k~~~~~lGfsi~gg  161 (175)
                      +. |++        +.+++.+.++....||+.....
T Consensus        49 V~~rdG--------e~~~l~Ie~~~dedlG~~f~~~   76 (433)
T TIGR03279        49 VLDANG--------ESHQIEIEKDLDEDLGLEFTTA   76 (433)
T ss_pred             EEcCCC--------eEEEEEEecCCCCCCcEEeccc
Confidence            75 432        4578889888788999988653

Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.

>PRK10942 serine endoprotease; Provisional

Probab=98.46  E-value=2e-06  Score=73.11  Aligned_cols=46  Identities=30%  Similarity=0.460  Sum_probs=40.3

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLT   91 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~   91 (175)
                      .|++|..|.++|||+++| |+.||+|++|||+.+.+  +++....++..
T Consensus       311 ~GvlV~~V~~~SpA~~AG-L~~GDvIl~InG~~V~s--~~dl~~~l~~~  356 (473)
T PRK10942        311 RGAFVSQVLPNSSAAKAG-IKAGDVITSLNGKPISS--FAALRAQVGTM  356 (473)
T ss_pred             CceEEEEECCCChHHHcC-CCCCCEEEEECCEECCC--HHHHHHHHHhc
Confidence            489999999999999999 99999999999999965  57777777653

>PRK11186 carboxy-terminal protease; Provisional

Probab=98.46  E-value=7.9e-07  Score=78.05  Aligned_cols=51  Identities=22%  Similarity=0.333  Sum_probs=43.6

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEEC--C---eecCCCCHHHHHHHHHcCCCC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELT--G---EDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VN--G---~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .++|..|.+||||++++.|++||+|++||  |   .++.+++.++++.+|+...+.
T Consensus       256 ~~~V~~vipGsPA~ka~gLk~GD~IlaVn~~g~~~~dv~g~~~~~vv~lirG~~Gt  311 (667)
T PRK11186        256 YTVINSLVAGGPAAKSKKLSVGDKIVGVGQDGKPIVDVIGWRLDDVVALIKGPKGS  311 (667)
T ss_pred             eEEEEEccCCChHHHhCCCCCCCEEEEECCCCCcccccccCCHHHHHHHhcCCCCC
Confidence            47899999999999983399999999999  4   356688889999999987766

>KOG3571|consensus

Probab=98.41  E-value=2.9e-07  Score=76.72  Aligned_cols=52  Identities=37%  Similarity=0.572  Sum_probs=48.8

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      +||||..|.++|+.+.+|++.+||.||.||.+++++++..+|+..|+..-.+
T Consensus       277 ggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFENmSNd~AVrvLREaV~~  328 (626)
T KOG3571|consen  277 GGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFENMSNDQAVRVLREAVSR  328 (626)
T ss_pred             CceEEeeeccCceeeccCccCccceEEEeeecchhhcCchHHHHHHHHHhcc
Confidence            5999999999999999999999999999999999999999999999965544

>KOG3550|consensus

Probab=98.41  E-value=2.8e-07  Score=65.68  Aligned_cols=43  Identities=37%  Similarity=0.765  Sum_probs=40.7

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhCC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG   44 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~g   44 (175)
                      +|+|||.|++-|.|+-||++|+|||++|+.-.|+.++++|+..
T Consensus       121 riipggvadrhgglkrgdqllsvngvsvege~hekavellkaa  163 (207)
T KOG3550|consen  121 RIIPGGVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAA  163 (207)
T ss_pred             eecCCccccccCcccccceeEeecceeecchhhHHHHHHHHHh
Confidence            6899999999999999999999999999999999999999853

>PRK10779 zinc metallopeptidase RseP; Provisional

Probab=98.40  E-value=1.3e-06  Score=73.84  Aligned_cols=42  Identities=19%  Similarity=0.245  Sum_probs=35.2

Q ss_pred             eEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHH
Q psy1521          45 ILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR   89 (175)
Q Consensus        45 i~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk   89 (175)
                      .+|..|.++|||+++| |++||+|++|||+.+.+.  ++....+.
T Consensus       128 ~lV~~V~~~SpA~kAG-Lk~GDvI~~vnG~~V~~~--~~l~~~v~  169 (449)
T PRK10779        128 PVVGEIAPNSIAAQAQ-IAPGTELKAVDGIETPDW--DAVRLALV  169 (449)
T ss_pred             ccccccCCCCHHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHH
Confidence            3689999999999999 999999999999999765  55544443

>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements

Probab=98.36  E-value=8.4e-07  Score=57.04  Aligned_cols=41  Identities=39%  Similarity=0.680  Sum_probs=37.5

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      .|.++++|++.| |++||+|++|||.++.++++.++...++.
T Consensus        32 ~v~~~s~a~~~g-l~~GD~I~~ing~~i~~~~~~~~~~~l~~   72 (82)
T cd00992          32 RVEPGGPAERGG-LRVGDRILEVNGVSVEGLTHEEAVELLKN   72 (82)
T ss_pred             EECCCChHHhCC-CCCCCEEEEECCEEcCccCHHHHHHHHHh
Confidence            578899999988 99999999999999999999999988864

May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.

>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts

Probab=98.32  E-value=1.1e-06  Score=56.95  Aligned_cols=40  Identities=35%  Similarity=0.624  Sum_probs=36.3

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      .|.+++||++.| |++||+|++|||..+.++++.++...++
T Consensus        19 ~v~~~s~a~~~g-l~~GD~I~~vng~~i~~~~~~~~~~~l~   58 (85)
T cd00988          19 SVLPGSPAAKAG-IKAGDIIVAIDGEPVDGLSLEDVVKLLR   58 (85)
T ss_pred             EecCCCCHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHhc
Confidence            578999999998 9999999999999999998888887774

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>TIGR02038 protease_degS periplasmic serine pepetdase DegS

Probab=98.31  E-value=2.3e-06  Score=70.19  Aligned_cols=45  Identities=27%  Similarity=0.473  Sum_probs=39.9

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHc
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRL   90 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~   90 (175)
                      .|++|..|.+++||+++| |++||+|++|||+.+.+  +++....+++
T Consensus       278 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~s--~~dl~~~l~~  322 (351)
T TIGR02038       278 RGIVITGVDPNGPAARAG-ILVRDVILKYDGKDVIG--AEELMDRIAE  322 (351)
T ss_pred             ccceEeecCCCChHHHCC-CCCCCEEEEECCEEcCC--HHHHHHHHHh
Confidence            389999999999999999 99999999999999954  6777777765

This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).

>TIGR01713 typeII_sec_gspC general secretion pathway protein C

Probab=98.29  E-value=3e-06  Score=66.61  Aligned_cols=45  Identities=24%  Similarity=0.304  Sum_probs=40.3

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLT   91 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~   91 (175)
                      |+.|..+.++++|+++| |++||.|++|||+++.+  .+++.+++.+.
T Consensus       192 G~~v~~v~~~s~a~~aG-Lr~GDvIv~ING~~i~~--~~~~~~~l~~~  236 (259)
T TIGR01713       192 GYRLNPGKDPSLFYKSG-LQDGDIAVALNGLDLRD--PEQAFQALQML  236 (259)
T ss_pred             EEEEEecCCCCHHHHcC-CCCCCEEEEECCEEcCC--HHHHHHHHHhc
Confidence            88899999999999999 99999999999999964  57788778764

This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.

>KOG3606|consensus

Probab=98.27  E-value=2.3e-06  Score=66.50  Aligned_cols=51  Identities=22%  Similarity=0.380  Sum_probs=48.0

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      ||||+++.|||.|+..|-|-+.|++++|||+.+.+.|.+++..|+-+....
T Consensus       195 GIFISRlVpGGLAeSTGLLaVnDEVlEVNGIEVaGKTLDQVTDMMvANshN  245 (358)
T KOG3606|consen  195 GIFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTDMMVANSHN  245 (358)
T ss_pred             ceEEEeecCCccccccceeeecceeEEEcCEEeccccHHHHHHHHhhcccc
Confidence            999999999999999999999999999999999999999999998766555

>PRK10898 serine endoprotease; Provisional

Probab=98.26  E-value=5.9e-06  Score=67.86  Aligned_cols=45  Identities=24%  Similarity=0.468  Sum_probs=38.9

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHc
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRL   90 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~   90 (175)
                      .|++|..|.++|||+++| |++||+|++|||+.+.+  +.+....+.+
T Consensus       279 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~s--~~~l~~~l~~  323 (353)
T PRK10898        279 QGIVVNEVSPDGPAAKAG-IQVNDLIISVNNKPAIS--ALETMDQVAE  323 (353)
T ss_pred             CeEEEEEECCCChHHHcC-CCCCCEEEEECCEEcCC--HHHHHHHHHh
Confidence            489999999999999999 99999999999999954  5666666654

>KOG3552|consensus

Probab=98.25  E-value=1.4e-06  Score=77.20  Aligned_cols=51  Identities=22%  Similarity=0.419  Sum_probs=47.9

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCCCC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK   96 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~~~   96 (175)
                      +++|..|.+|||+.  |+|++||+|++|||.++...+++.++++++.+...+.
T Consensus        76 PviVr~VT~GGps~--GKL~PGDQIl~vN~Epv~daprervIdlvRace~sv~  126 (1298)
T KOG3552|consen   76 PVIVRFVTEGGPSI--GKLQPGDQILAVNGEPVKDAPRERVIDLVRACESSVN  126 (1298)
T ss_pred             ceEEEEecCCCCcc--ccccCCCeEEEecCcccccccHHHHHHHHHHHhhhcc
Confidence            67899999999998  7899999999999999999999999999999999843

>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2

Probab=98.24  E-value=2.4e-06  Score=55.03  Aligned_cols=41  Identities=39%  Similarity=0.585  Sum_probs=36.9

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      .|.++|+|+++| |++||+|++|||..+.++++.+....++.
T Consensus        32 ~v~~~s~a~~~g-l~~GD~I~~In~~~v~~~~~~~~~~~~~~   72 (85)
T smart00228       32 SVVPGSPAAKAG-LKVGDVILEVNGTSVEGLTHLEAVDLLKK   72 (85)
T ss_pred             EECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            478899999999 99999999999999999999888777654

Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.

>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous

Probab=98.23  E-value=9.1e-06  Score=57.96  Aligned_cols=84  Identities=19%  Similarity=0.188  Sum_probs=57.8

Q ss_pred             CCeEEEEecCCCcccccCCcCC-CCEEEEECCeecCCCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCcccceeee
Q psy1521          43 GGILVHDIYPEGAAAKDARLKF-GDQILELTGEDFRNITHAKAMAHLRLTPAKAKPCPTVPSEPNANATTGEKTTFYFHF  121 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~-GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (175)
                      .++-|.+|.|+|||+++| |++ .|.|+.+++..+.+  .++..+.+++..+.                           
T Consensus        43 ~~~~Vl~V~p~SPA~~AG-L~p~~DyIig~~~~~l~~--~~~l~~~v~~~~~~---------------------------   92 (138)
T PF04495_consen   43 EGWHVLRVAPNSPAAKAG-LEPFFDYIIGIDGGLLDD--EDDLFELVEANENK---------------------------   92 (138)
T ss_dssp             CEEEEEEE-TTSHHHHTT---TTTEEEEEETTCE--S--TCHHHHHHHHTTTS---------------------------
T ss_pred             ceEEEeEecCCCHHHHCC-ccccccEEEEccceecCC--HHHHHHHHHHcCCC---------------------------
Confidence            366799999999999999 998 69999999999875  46777788877666                           


Q ss_pred             eeeeeecccCCCCCCCCCceEEEEEEeC----CCCCcCEEEEcCc
Q psy1521         122 QVKLVVLRDTVTKEDDLLEFVDVELTKK----AGKGFGLSLVGRK  162 (175)
Q Consensus       122 ~v~l~v~r~~~~~~~~~~~~~~v~l~k~----~~~~lGfsi~gg~  162 (175)
                      ++.|.|+....      ...++|++...    +.+-||.+|..|-
T Consensus        93 ~l~L~Vyns~~------~~vR~V~i~P~~~WgG~GlLGc~ig~G~  131 (138)
T PF04495_consen   93 PLQLYVYNSKT------DSVREVTITPSRNWGGRGLLGCHIGYGY  131 (138)
T ss_dssp             -EEEEEEETTT------TCEEEEEE---TTSSSSTSSSEEEE-SG
T ss_pred             cEEEEEEECCC------CeEEEEEEEcCCCCCCCeeeeEEeccee
Confidence            48898875422      34688888653    3456899997653

GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.

>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C

Probab=98.20  E-value=7.7e-07  Score=57.68  Aligned_cols=37  Identities=35%  Similarity=0.689  Sum_probs=30.1

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIM   41 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l   41 (175)
                      .|.++|||+++| |+.||.|++|||.++.++  .+....+
T Consensus        20 ~V~~~spA~~aG-l~~GD~I~~ing~~v~~~--~~~~~~l   56 (82)
T PF13180_consen   20 SVIPGSPAAKAG-LQPGDIILAINGKPVNSS--EDLVNIL   56 (82)
T ss_dssp             EESTTSHHHHTT-S-TTEEEEEETTEESSSH--HHHHHHH
T ss_pred             EeCCCCcHHHCC-CCCCcEEEEECCEEcCCH--HHHHHHH
Confidence            578999999999 999999999999999665  4444444

...

>KOG3651|consensus

Probab=98.19  E-value=4.4e-06  Score=65.93  Aligned_cols=51  Identities=20%  Similarity=0.447  Sum_probs=48.4

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      -+||..|..+.||+++|+++.||.|++|||+++.+.+..++.++++...+.
T Consensus        31 ClYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKGktKveVAkmIQ~~~~e   81 (429)
T KOG3651|consen   31 CLYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKGKTKVEVAKMIQVSLNE   81 (429)
T ss_pred             eEEEEEeccCCchhccCccccCCeeEEecceeecCccHHHHHHHHHHhccc
Confidence            368999999999999999999999999999999999999999999988777

>TIGR02860 spore_IV_B stage IV sporulation protein B

Probab=98.16  E-value=1.5e-05  Score=65.93  Aligned_cols=39  Identities=15%  Similarity=0.386  Sum_probs=33.8

Q ss_pred             CCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          53 EGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        53 gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      ++||+++| |++||+|++|||+.+.  +++++.+++++....
T Consensus       123 ~SPAa~AG-Lq~GDiIvsING~~V~--s~~DL~~iL~~~~g~  161 (402)
T TIGR02860       123 HSPGEEAG-IQIGDRILKINGEKIK--NMDDLANLINKAGGE  161 (402)
T ss_pred             CCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHhCCCC
Confidence            68999999 9999999999999995  468888888876544

SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.

>KOG3553|consensus

Probab=98.14  E-value=1.3e-06  Score=57.93  Aligned_cols=41  Identities=24%  Similarity=0.346  Sum_probs=37.7

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      .|..||||+.+| ||.+|+|+.|||.+..-++|+.|++.++.
T Consensus        65 ~V~eGsPA~~AG-LrihDKIlQvNG~DfTMvTHd~Avk~i~k  105 (124)
T KOG3553|consen   65 RVSEGSPAEIAG-LRIHDKILQVNGWDFTMVTHDQAVKRITK  105 (124)
T ss_pred             EeccCChhhhhc-ceecceEEEecCceeEEEEhHHHHHHhhH
Confidence            578999999999 99999999999999999999999887764

>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

Probab=98.04  E-value=4.2e-06  Score=53.87  Aligned_cols=38  Identities=26%  Similarity=0.387  Sum_probs=31.4

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      .|.++|+|+++| |++||.|++|||..+.++.  ++...+.
T Consensus        16 ~V~~~spa~~aG-L~~GDiI~~Ing~~v~~~~--d~~~~l~   53 (79)
T cd00991          16 GVIVGSPAENAV-LHTGDVIYSINGTPITTLE--DFMEALK   53 (79)
T ss_pred             EECCCChHHhcC-CCCCCEEEEECCEEcCCHH--HHHHHHh
Confidence            578999999999 9999999999999999764  4444443

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>KOG4407|consensus

Probab=97.99  E-value=5.4e-06  Score=75.74  Aligned_cols=92  Identities=15%  Similarity=0.264  Sum_probs=79.2

Q ss_pred             cCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh--CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCC
Q psy1521           3 AVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK--GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNIT   80 (175)
Q Consensus         3 v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~--~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~   80 (175)
                      +..++++..+| +-.+|.|..|||..+...+ .....+++  ..+||+.|.+++||..+. |+.||+++.||...+.++-
T Consensus       103 ~~s~~~~~nsG-~~s~~~v~~itG~e~~~~T-S~~~~~vk~~eT~~~~eV~~n~~~~~a~-LQ~~~~V~~v~~q~~A~i~  179 (1973)
T KOG4407|consen  103 EASSAAGSNSG-SSSSVGVAGITGLEPTSPT-SLPPYQVKAMETIFIKEVQANGPAHYAN-LQTGDRVLMVNNQPIAGIA  179 (1973)
T ss_pred             hcccCcccccC-cccccceeeecccccCCCc-cccHHHHhhhhhhhhhhhccCChhHHHh-hhccceeEEeecCcccchh
Confidence            34567777888 9999999999999998877 55555555  378999999999999998 9999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCCC
Q psy1521          81 HAKAMAHLRLTPAKAKP   97 (175)
Q Consensus        81 ~~~a~~~lk~~~~~~~~   97 (175)
                      ..+++.++|+.....+|
T Consensus       180 ~s~~~S~~~qt~~~~~~  196 (1973)
T KOG4407|consen  180 YSTIVSMIKQTPAVLTL  196 (1973)
T ss_pred             hhhhhhhhccCCCCCCc
Confidence            99999999988776543

>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

Probab=97.99  E-value=1.1e-05  Score=51.48  Aligned_cols=37  Identities=32%  Similarity=0.663  Sum_probs=30.8

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIM   41 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l   41 (175)
                      .|.++|+|++.| |++||.|++|||.++.++  +++...+
T Consensus        18 ~v~~~s~a~~~g-l~~GD~I~~ing~~i~~~--~~~~~~l   54 (79)
T cd00989          18 EVVPGSPAAKAG-LKAGDRILAINGQKIKSW--EDLVDAV   54 (79)
T ss_pred             eECCCCHHHHcC-CCCCCEEEEECCEECCCH--HHHHHHH
Confidence            578999999999 999999999999999976  3444444

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>PF12812 PDZ_1: PDZ-like domain

Probab=97.91  E-value=0.00019  Score=46.12  Aligned_cols=74  Identities=14%  Similarity=0.099  Sum_probs=61.7

Q ss_pred             CCCEEEEECCeeCCCCCHHHHHHHh-hCCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCC
Q psy1521          17 KGDQIMSVDGTDVRDKSQEEVATIM-KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPA   93 (175)
Q Consensus        17 ~GD~Il~Vng~~v~~~~~~~~~~~l-~~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~   93 (175)
                      .-|+.+++-|-.+.+++|+.+.... .-+.++.....++++...| +..|-.|.+|||+++.+  .++..+.+|+.++
T Consensus         3 tp~r~v~~~Ga~f~~Ls~q~aR~~~~~~~gv~v~~~~g~~~~~~~-i~~g~iI~~Vn~kpt~~--Ld~f~~vvk~ipd   77 (78)
T PF12812_consen    3 TPSRFVEVCGAVFHDLSYQQARQYGIPVGGVYVAVSGGSLAFAGG-ISKGFIITSVNGKPTPD--LDDFIKVVKKIPD   77 (78)
T ss_pred             cCCEEEEEcCeecccCCHHHHHHhCCCCCEEEEEecCCChhhhCC-CCCCeEEEeECCcCCcC--HHHHHHHHHhCCC
Confidence            3589999999999999999998873 3355566677888888766 99999999999999965  5899999988765

>TIGR00054 RIP metalloprotease RseP

Probab=97.91  E-value=5.2e-05  Score=63.68  Aligned_cols=48  Identities=15%  Similarity=0.273  Sum_probs=39.8

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      +.+|..|.++|||+++| |++||+|++|||+.+.+  ..+..+.+......
T Consensus       129 g~~V~~V~~~SpA~~AG-L~~GDvI~~vng~~v~~--~~dl~~~ia~~~~~  176 (420)
T TIGR00054       129 GPVIELLDKNSIALEAG-IEPGDEILSVNGNKIPG--FKDVRQQIADIAGE  176 (420)
T ss_pred             CceeeccCCCCHHHHcC-CCCCCEEEEECCEEcCC--HHHHHHHHHhhccc
Confidence            66799999999999999 99999999999999965  56666666554444

A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.

>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases

Probab=97.86  E-value=1e-05  Score=51.78  Aligned_cols=30  Identities=27%  Similarity=0.375  Sum_probs=27.6

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDK   32 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~   32 (175)
                      .|.++|+|+++| |++||+|++|||.++.++
T Consensus        18 ~V~~~s~a~~aG-l~~GD~I~~Ing~~v~~~   47 (80)
T cd00990          18 FVRDDSPADKAG-LVAGDELVAVNGWRVDAL   47 (80)
T ss_pred             EECCCChHHHhC-CCCCCEEEEECCEEhHHH
Confidence            578999999999 999999999999999873

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>KOG3542|consensus

Probab=97.86  E-value=6.2e-06  Score=71.39  Aligned_cols=48  Identities=46%  Similarity=0.758  Sum_probs=45.9

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTP   92 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~   92 (175)
                      ||||..|.||+.|+++| |+.||+|++|||++.++++...|..+|++.-
T Consensus       563 gifV~~V~pgskAa~~G-lKRgDqilEVNgQnfenis~~KA~eiLrnnt  610 (1283)
T KOG3542|consen  563 GIFVAEVFPGSKAAREG-LKRGDQILEVNGQNFENISAKKAEEILRNNT  610 (1283)
T ss_pred             eeEEeeecCCchHHHhh-hhhhhhhhhccccchhhhhHHHHHHHhcCCc
Confidence            89999999999999999 9999999999999999999999999998754

>KOG0609|consensus

Probab=97.84  E-value=2.9e-05  Score=65.53  Aligned_cols=53  Identities=26%  Similarity=0.371  Sum_probs=50.0

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCCCC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK   96 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~~~   96 (175)
                      .+||.+|..||.|++.|.|+.||+|++|||+++.+....+...+|+++.+.++
T Consensus       147 ~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~l~~~~G~it  199 (542)
T KOG0609|consen  147 KVVVARIMHGGMADRQGLLHVGDEILEVNGISVANKSPEELQELLRNSRGSIT  199 (542)
T ss_pred             ccEEeeeccCCcchhccceeeccchheecCeecccCCHHHHHHHHHhCCCcEE
Confidence            58999999999999999999999999999999999999999999999987744

>KOG3129|consensus

Probab=97.79  E-value=0.00013  Score=54.88  Aligned_cols=34  Identities=26%  Similarity=0.419  Sum_probs=28.7

Q ss_pred             eEEEEecCCCcccccCCcCCCCEEEEECCeecCCC
Q psy1521          45 ILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNI   79 (175)
Q Consensus        45 i~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~   79 (175)
                      .+|..|.|+|||+.+| |+.||.|+.+.+..--+.
T Consensus       141 a~V~sV~~~SPA~~aG-l~~gD~il~fGnV~sgn~  174 (231)
T KOG3129|consen  141 AVVDSVVPGSPADEAG-LCVGDEILKFGNVHSGNF  174 (231)
T ss_pred             EEEeecCCCChhhhhC-cccCceEEEecccccccc
Confidence            4689999999999999 999999999876554443

>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis

Probab=97.78  E-value=1.8e-05  Score=51.60  Aligned_cols=32  Identities=38%  Similarity=0.602  Sum_probs=28.9

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCH
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQ   34 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~   34 (175)
                      .|.++++|+++| |++||.|++|||..+.++..
T Consensus        30 ~v~~~s~a~~~g-l~~GD~I~~Ing~~i~~~~~   61 (90)
T cd00987          30 SVDPGSPAAKAG-LKPGDVILAVNGKPVKSVAD   61 (90)
T ss_pred             EECCCCHHHHcC-CCcCCEEEEECCEECCCHHH
Confidence            578999999999 99999999999999988754

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>KOG3651|consensus

Probab=97.77  E-value=2.4e-05  Score=61.84  Aligned_cols=42  Identities=36%  Similarity=0.594  Sum_probs=39.0

Q ss_pred             CccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           1 MRAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         1 ~~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      ++|..++||+++|+++.||.|+.|||+.|...+..++.++++
T Consensus        35 VQvFD~tPAa~dG~i~~GDEi~avNg~svKGktKveVAkmIQ   76 (429)
T KOG3651|consen   35 VQVFDKTPAAKDGRIRCGDEIVAVNGISVKGKTKVEVAKMIQ   76 (429)
T ss_pred             EEeccCCchhccCccccCCeeEEecceeecCccHHHHHHHHH
Confidence            368899999999999999999999999999999988888876

>TIGR00225 prc C-terminal peptidase (prc)

Probab=97.77  E-value=3.6e-05  Score=62.69  Aligned_cols=40  Identities=23%  Similarity=0.511  Sum_probs=35.7

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      .|.++|||+++| |+.||+|++|||.++.+++..++...++
T Consensus        68 ~V~~~spA~~aG-L~~GD~I~~Ing~~v~~~~~~~~~~~l~  107 (334)
T TIGR00225        68 SPFEGSPAEKAG-IKPGDKIIKINGKSVAGMSLDDAVALIR  107 (334)
T ss_pred             EeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhcc
Confidence            578999999999 9999999999999999998777777664

A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.

>KOG1892|consensus

Probab=97.77  E-value=2e-05  Score=70.43  Aligned_cols=41  Identities=49%  Similarity=0.702  Sum_probs=38.9

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      +|++||+|+.||||+.||++|+|||..+..++.+.|.+++.
T Consensus       966 sVV~GgaAd~DGRL~aGDQLLsVdG~SLiGisQErAA~lmt 1006 (1629)
T KOG1892|consen  966 SVVEGGAADHDGRLEAGDQLLSVDGHSLIGISQERAARLMT 1006 (1629)
T ss_pred             EeccCCccccccccccCceeeeecCcccccccHHHHHHHHh
Confidence            68999999999999999999999999999999999998874

>PLN00049 carboxyl-terminal processing protease; Provisional

Probab=97.76  E-value=4.1e-05  Score=63.70  Aligned_cols=40  Identities=38%  Similarity=0.570  Sum_probs=36.2

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      .|.|+|||+++| |+.||+|++|||+++.+++..++..+++
T Consensus       108 ~V~~~SPA~~aG-l~~GD~Iv~InG~~v~~~~~~~~~~~l~  147 (389)
T PLN00049        108 APAPGGPAARAG-IRPGDVILAIDGTSTEGLSLYEAADRLQ  147 (389)
T ss_pred             EeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHh
Confidence            478999999999 9999999999999999998888877775

>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases

Probab=97.68  E-value=3.7e-05  Score=49.22  Aligned_cols=30  Identities=37%  Similarity=0.522  Sum_probs=26.5

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKS   33 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~   33 (175)
                      .|.++|+|+. | |+.||.|++|||..+.++.
T Consensus        14 ~V~~~s~A~~-g-L~~GD~I~~Ing~~v~~~~   43 (79)
T cd00986          14 SVVEGMPAAG-K-LKAGDHIIAVDGKPFKEAE   43 (79)
T ss_pred             EECCCCchhh-C-CCCCCEEEEECCEECCCHH
Confidence            5789999986 8 9999999999999998764

Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase

Probab=97.66  E-value=3.8e-05  Score=64.08  Aligned_cols=32  Identities=34%  Similarity=0.597  Sum_probs=30.0

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCH
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQ   34 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~   34 (175)
                      .|.|+|+|+++| |++||+|++|||..+.+|..
T Consensus         4 ~V~pgSpAe~AG-Le~GD~IlsING~~V~Dw~D   35 (433)
T TIGR03279         4 AVLPGSIAEELG-FEPGDALVSINGVAPRDLID   35 (433)
T ss_pred             CcCCCCHHHHcC-CCCCCEEEEECCEECCCHHH
Confidence            689999999999 99999999999999998864

Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.

>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]

Probab=97.64  E-value=7.2e-05  Score=62.50  Aligned_cols=41  Identities=32%  Similarity=0.588  Sum_probs=38.4

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      ...+++||+++| |++||+|++|||.++.+++.++++..+++
T Consensus       118 s~~~~~PA~kag-i~~GD~I~~IdG~~~~~~~~~~av~~irG  158 (406)
T COG0793         118 SPIDGSPAAKAG-IKPGDVIIKIDGKSVGGVSLDEAVKLIRG  158 (406)
T ss_pred             ecCCCChHHHcC-CCCCCEEEEECCEEccCCCHHHHHHHhCC
Confidence            568999999999 99999999999999999999999999875

>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]

Probab=97.61  E-value=0.0004  Score=55.45  Aligned_cols=45  Identities=20%  Similarity=0.401  Sum_probs=38.8

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTP   92 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~   92 (175)
                      |+|+..+..+++|.  |.|+.||.|.+|||+++.+  .++....+++..
T Consensus       131 gvyv~~v~~~~~~~--gkl~~gD~i~avdg~~f~s--~~e~i~~v~~~k  175 (342)
T COG3480         131 GVYVLSVIDNSPFK--GKLEAGDTIIAVDGEPFTS--SDELIDYVSSKK  175 (342)
T ss_pred             eEEEEEccCCcchh--ceeccCCeEEeeCCeecCC--HHHHHHHHhccC
Confidence            89999999999987  5699999999999999954  588888887543

>KOG3551|consensus

Probab=97.55  E-value=5.1e-05  Score=61.85  Aligned_cols=41  Identities=37%  Similarity=0.626  Sum_probs=39.3

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      +|.+|=.|++.+-|..||.||+|||.++.+.+|+|+++.|+
T Consensus       116 KIFkGlAADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqaLK  156 (506)
T KOG3551|consen  116 KIFKGLAADQTGALFLGDAILSVNGEDLRDATHDEAVQALK  156 (506)
T ss_pred             HhccccccccccceeeccEEEEecchhhhhcchHHHHHHHH
Confidence            68899999999999999999999999999999999999997

>KOG4371|consensus

Probab=97.51  E-value=0.00015  Score=65.48  Aligned_cols=75  Identities=31%  Similarity=0.620  Sum_probs=68.9

Q ss_pred             CCCCCEEEEECCeeCCCCCHHHHHHHhhC---------------------------------------------------
Q psy1521          15 LLKGDQIMSVDGTDVRDKSQEEVATIMKG---------------------------------------------------   43 (175)
Q Consensus        15 L~~GD~Il~Vng~~v~~~~~~~~~~~l~~---------------------------------------------------   43 (175)
                      |+.||.++.|||+.++..-|.+++.++++                                                   
T Consensus      1187 ~~~g~~l~~~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~d~~~~s~~~~~~~l~~~~~~~~p~~~~~~~~~~~ 1266 (1332)
T KOG4371|consen 1187 IRVGDVLLYVNGIAVEGKVHQEVVAMLRGGGDRVVLGVQRPPPAYSDQHHASSTSASAPLISVMLLKKPMATLGLSLAKR 1266 (1332)
T ss_pred             cchhhhhhhccceeeechhhHHHHHHHhccCceEEEEeecCCcccccchhhhhhcccchhhhheeeeccccccccccccc
Confidence            88999999999999999999999999862                                                   


Q ss_pred             ----CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHH
Q psy1521          44 ----GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR   89 (175)
Q Consensus        44 ----gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk   89 (175)
                          |+|+..+...+.|.-.|.+++||++...+|+++.+.+..+..+-++
T Consensus      1267 ~~s~~~~~~~~~~~~~a~~~~~~r~g~~~~~~~~~~~~~~~p~~~l~~~~ 1316 (1332)
T KOG4371|consen 1267 TMSDGIFIRNIAQDSAASSEGTLRVGDRLVSLDGEPVDGFTPATILEKLK 1316 (1332)
T ss_pred             CcCCceeeecccccccccccccccccceeeccCCccCCCCChHHHHHHhh
Confidence                8999999999999999999999999999999999998887776666

>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A

Probab=97.49  E-value=0.00085  Score=44.10  Aligned_cols=50  Identities=28%  Similarity=0.425  Sum_probs=31.2

Q ss_pred             CCeEEEEecCC--------CcccccC-CcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPE--------GAAAKDA-RLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~g--------g~A~~~G-~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      +++-|.+|.++        ||..+.| .+++||.|++|||+.+..-  .....+|.+..++
T Consensus        12 ~~y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~~v~~~--~~~~~lL~~~agk   70 (88)
T PF14685_consen   12 GGYRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQPVTAD--ANPYRLLEGKAGK   70 (88)
T ss_dssp             TEEEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTEE-BTT--B-HHHHHHTTTTS
T ss_pred             CEEEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCEECCCC--CCHHHHhcccCCC
Confidence            35678999986        5655555 3569999999999999754  4456667766666

>KOG3571|consensus

Probab=97.46  E-value=8.3e-05  Score=62.43  Aligned_cols=41  Identities=27%  Similarity=0.560  Sum_probs=39.3

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      .|.++|+.|.|||+.+||.||.||.++.+|++..+|++.|+
T Consensus       283 sImkgGAVA~DGRIe~GDMiLQVNevsFENmSNd~AVrvLR  323 (626)
T KOG3571|consen  283 SIMKGGAVALDGRIEPGDMILQVNEVSFENMSNDQAVRVLR  323 (626)
T ss_pred             eeccCceeeccCccCccceEEEeeecchhhcCchHHHHHHH
Confidence            57899999999999999999999999999999999999997

>KOG1421|consensus

Probab=97.45  E-value=0.00042  Score=60.36  Aligned_cols=76  Identities=24%  Similarity=0.194  Sum_probs=62.3

Q ss_pred             CCCCCEEEEECCeeCCCCCHHHHHHHhh------------------------------------------------CCeE
Q psy1521          15 LLKGDQIMSVDGTDVRDKSQEEVATIMK------------------------------------------------GGIL   46 (175)
Q Consensus        15 L~~GD~Il~Vng~~v~~~~~~~~~~~l~------------------------------------------------~gi~   46 (175)
                      |..||.||+|||+.+..++.-.-+..+.                                                .|+|
T Consensus       786 l~~gdiilsvngk~itr~~dl~d~~eid~~ilrdg~~~~ikipt~p~~et~r~vi~~gailq~ph~av~~q~edlp~gvy  865 (955)
T KOG1421|consen  786 LGVGDIILSVNGKMITRLSDLHDFEEIDAVILRDGIEMEIKIPTYPEYETSRAVIWMGAILQPPHSAVFEQVEDLPEGVY  865 (955)
T ss_pred             cccccEEEEecCeEEeeehhhhhhhhhheeeeecCcEEEEEeccccccccceEEEEEeccccCchHHHHHHHhccCCceE
Confidence            8899999999999988776311122221                                                3999


Q ss_pred             EEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          47 VHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        47 V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      +...-.||||.+ + |++-.-|.+|||+..  .+.++...+++..+..
T Consensus       866 vt~rg~gspalq-~-l~aa~fitavng~~t--~~lddf~~~~~~ipdn  909 (955)
T KOG1421|consen  866 VTSRGYGSPALQ-M-LRAAHFITAVNGHDT--NTLDDFYHMLLEIPDN  909 (955)
T ss_pred             EeecccCChhHh-h-cchheeEEEeccccc--CcHHHHHHHHhhCCCC
Confidence            999999999999 7 999999999999998  4579999999887776

>KOG3834|consensus

Probab=97.39  E-value=0.00086  Score=55.47  Aligned_cols=88  Identities=17%  Similarity=0.213  Sum_probs=63.8

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC--------------------------------------
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG--------------------------------------   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~--------------------------------------   43 (175)
                      +|..+++|.++|-.---|-|++|||.-+.. ..+....+++.                                      
T Consensus        21 kVqedSpa~~aglepffdFIvSI~g~rL~~-dnd~Lk~llk~~sekVkltv~n~kt~~~R~v~I~ps~~wggqllGvsvr   99 (462)
T KOG3834|consen   21 KVQEDSPAHKAGLEPFFDFIVSINGIRLNK-DNDTLKALLKANSEKVKLTVYNSKTQEVRIVEIVPSNNWGGQLLGVSVR   99 (462)
T ss_pred             EeecCChHHhcCcchhhhhhheeCcccccC-chHHHHHHHHhcccceEEEEEecccceeEEEEecccccccccccceEEE
Confidence            688999999999555569999999998853 33333333320                                      


Q ss_pred             ----------CeEEEEecCCCcccccCCcC-CCCEEEEE-CCeecCCCCHHHHHHHHHcCCCC
Q psy1521          44 ----------GILVHDIYPEGAAAKDARLK-FGDQILEL-TGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        44 ----------gi~V~~v~~gg~A~~~G~L~-~GD~Il~V-NG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                                -+-|-+|.+++||+++| |+ -+|.|+-+ |.+.   ...++...+|.....+
T Consensus       100 Fcsf~~A~~~vwHvl~V~p~SPaalAg-l~~~~DYivG~~~~~~---~~~eDl~~lIeshe~k  158 (462)
T KOG3834|consen  100 FCSFDGAVESVWHVLSVEPNSPAALAG-LRPYTDYIVGIWDAVM---HEEEDLFTLIESHEGK  158 (462)
T ss_pred             eccCccchhheeeeeecCCCCHHHhcc-cccccceEecchhhhc---cchHHHHHHHHhccCC
Confidence                      12377899999999999 87 78999988 5533   3456777777776666

>PRK11186 carboxy-terminal protease; Provisional

Probab=97.37  E-value=0.0002  Score=63.25  Aligned_cols=42  Identities=36%  Similarity=0.529  Sum_probs=35.8

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECC-----eeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDG-----TDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng-----~~v~~~~~~~~~~~l~~   43 (175)
                      .|+|||||++++.|++||+|++||+     +++.+|+.++++.++++
T Consensus       261 ~vipGsPA~ka~gLk~GD~IlaVn~~g~~~~dv~g~~~~~vv~lirG  307 (667)
T PRK11186        261 SLVAGGPAAKSKKLSVGDKIVGVGQDGKPIVDVIGWRLDDVVALIKG  307 (667)
T ss_pred             EccCCChHHHhCCCCCCCEEEEECCCCCcccccccCCHHHHHHHhcC
Confidence            5889999999944999999999994     35668888899999974

>TIGR01713 typeII_sec_gspC general secretion pathway protein C

Probab=97.36  E-value=0.00037  Score=54.87  Aligned_cols=41  Identities=22%  Similarity=0.384  Sum_probs=32.3

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCH-HHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQ-EEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~-~~~~~~l~~   43 (175)
                      .+.++++|++.| ||+||.|++|||.++.++.. .+++..++.
T Consensus       197 ~v~~~s~a~~aG-Lr~GDvIv~ING~~i~~~~~~~~~l~~~~~  238 (259)
T TIGR01713       197 PGKDPSLFYKSG-LQDGDIAVALNGLDLRDPEQAFQALQMLRE  238 (259)
T ss_pred             ecCCCCHHHHcC-CCCCCEEEEECCEEcCCHHHHHHHHHhcCC
Confidence            357899999999 99999999999999998754 333444433

This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.

>KOG3552|consensus

Probab=97.31  E-value=0.00023  Score=63.73  Aligned_cols=75  Identities=31%  Similarity=0.467  Sum_probs=52.8

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC---CeEEEEecC---CCc------ccccCCcCCCCEE-
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG---GILVHDIYP---EGA------AAKDARLKFGDQI-   68 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~---gi~V~~v~~---gg~------A~~~G~L~~GD~I-   68 (175)
                      -|.+|||+  .|+|++||+||.|||.+|.+...+.++++++.   .+-+.-+.|   .||      |++..+|+..-.= 
T Consensus        81 ~VT~GGps--~GKL~PGDQIl~vN~Epv~daprervIdlvRace~sv~ltV~qPc~~p~pKStflSa~KrArLkSnPvkV  158 (1298)
T KOG3552|consen   81 FVTEGGPS--IGKLQPGDQILAVNGEPVKDAPRERVIDLVRACESSVNLTVCQPCVLPGPKSTFLSAGKRARLKSNPVKV  158 (1298)
T ss_pred             EecCCCCc--cccccCCCeEEEecCcccccccHHHHHHHHHHHhhhcceEEeccccCCCchhhhhhhhhhhhhccCCcee
Confidence            36799999  89999999999999999999999999999873   333333332   111      3333447766422 


Q ss_pred             -----EEECCeecCC
Q psy1521          69 -----LELTGEDFRN   78 (175)
Q Consensus        69 -----l~VNG~~l~~   78 (175)
                           +-|||..+..
T Consensus       159 rFaEeV~InG~~~~~  173 (1298)
T KOG3552|consen  159 RFAEEVCINGAPLFP  173 (1298)
T ss_pred             eeehhheecCcccCC
Confidence                 3478876643

>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]

Probab=97.23  E-value=0.00088  Score=54.81  Aligned_cols=45  Identities=27%  Similarity=0.408  Sum_probs=37.6

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLT   91 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~   91 (175)
                      |++|..+.+++||+++| ++.||.|+++||..+.+  ..+....+...
T Consensus       271 G~~V~~v~~~spa~~ag-i~~Gdii~~vng~~v~~--~~~l~~~v~~~  315 (347)
T COG0265         271 GAVVLGVLPGSPAAKAG-IKAGDIITAVNGKPVAS--LSDLVAAVASN  315 (347)
T ss_pred             ceEEEecCCCChHHHcC-CCCCCEEEEECCEEccC--HHHHHHHHhcc
Confidence            68999999999999999 99999999999999965  45555555433

>KOG3938|consensus

Probab=97.22  E-value=0.0003  Score=54.78  Aligned_cols=50  Identities=18%  Similarity=0.260  Sum_probs=46.8

Q ss_pred             eEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          45 ILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        45 i~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .||+.|.++|.-++--.+++||.|-+|||+++-++.|.++..+||.....
T Consensus       151 AFIKrIkegsvidri~~i~VGd~IEaiNge~ivG~RHYeVArmLKel~rg  200 (334)
T KOG3938|consen  151 AFIKRIKEGSVIDRIEAICVGDHIEAINGESIVGKRHYEVARMLKELPRG  200 (334)
T ss_pred             eeeEeecCCchhhhhhheeHHhHHHhhcCccccchhHHHHHHHHHhcccC
Confidence            48999999999998878999999999999999999999999999987766

>PRK09681 putative type II secretion protein GspC; Provisional

Probab=97.20  E-value=0.0012  Score=52.16  Aligned_cols=56  Identities=25%  Similarity=0.424  Sum_probs=42.5

Q ss_pred             EecCCCcc---cccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCcccceeeeeeee
Q psy1521          49 DIYPEGAA---AKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKPCPTVPSEPNANATTGEKTTFYFHFQVKL  125 (175)
Q Consensus        49 ~v~~gg~A---~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l  125 (175)
                      ++.|+..+   .+.| |++||.+++|||.++.+  .+++.++++......                          .++|
T Consensus       210 rl~Pgkd~~lF~~~G-Lq~GDva~sING~dL~D--~~qa~~l~~~L~~~t--------------------------ei~l  260 (276)
T PRK09681        210 AVKPGADRSLFDASG-FKEGDIAIALNQQDFTD--PRAMIALMRQLPSMD--------------------------SIQL  260 (276)
T ss_pred             EECCCCcHHHHHHcC-CCCCCEEEEeCCeeCCC--HHHHHHHHHHhccCC--------------------------eEEE
Confidence            67777544   5678 99999999999999975  477777777655541                          2889


Q ss_pred             eecccCCC
Q psy1521         126 VVLRDTVT  133 (175)
Q Consensus       126 ~v~r~~~~  133 (175)
                      ++.|++..
T Consensus       261 tVeRdGq~  268 (276)
T PRK09681        261 TVLRKGAR  268 (276)
T ss_pred             EEEECCEE
Confidence            99998654

>KOG1421|consensus

Probab=97.19  E-value=0.005  Score=53.97  Aligned_cols=84  Identities=19%  Similarity=0.251  Sum_probs=64.6

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh---------------------------------------
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK---------------------------------------   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~---------------------------------------   42 (175)
                      .+.|+|+|.+.  |++||.+++||+..+.++.  ++-+.|-                                       
T Consensus       309 ~vL~~gpa~k~--Le~GDillavN~t~l~df~--~l~~iLDegvgk~l~LtI~Rggqelel~vtvqdlh~itp~R~levc  384 (955)
T KOG1421|consen  309 TVLPEGPAEKK--LEPGDILLAVNSTCLNDFE--ALEQILDEGVGKNLELTIQRGGQELELTVTVQDLHGITPDRFLEVC  384 (955)
T ss_pred             EeccCCchhhc--cCCCcEEEEEcceehHHHH--HHHHHHhhccCceEEEEEEeCCEEEEEEEEeccccCCCCceEEEEc
Confidence            47899999654  9999999999988776542  2222221                                       


Q ss_pred             -------------------CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 -------------------GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 -------------------~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                                         +|+||++-- ++++.+.+ +. |-.|.+||+++..+  .+..+..+|.....
T Consensus       385 Gav~hdlsyq~ar~y~lP~~GvyVa~~~-gsf~~~~~-~y-~~ii~~vanK~tPd--LdaFidvlk~L~dg  450 (955)
T KOG1421|consen  385 GAVFHDLSYQLARLYALPVEGVYVASPG-GSFRHRGP-RY-GQIIDSVANKPTPD--LDAFIDVLKELPDG  450 (955)
T ss_pred             ceEecCCCHHHHhhcccccCcEEEccCC-CCccccCC-cc-eEEEEeecCCcCCC--HHHHHHHHHhccCC
Confidence                               288998876 88888866 66 88999999999854  58889999988777

>KOG4371|consensus

Probab=97.06  E-value=0.00095  Score=60.50  Aligned_cols=100  Identities=26%  Similarity=0.367  Sum_probs=77.0

Q ss_pred             eEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCcccceeeeeee
Q psy1521          45 ILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKPCPTVPSEPNANATTGEKTTFYFHFQVK  124 (175)
Q Consensus        45 i~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  124 (175)
                      +.++...-.+.-.+-. |+.||.++.+||+-+++.-|.+++.+++..++.                            +.
T Consensus      1171 ~~~~~~~~~~~~~~pd-~~~g~~l~~~n~i~~~~~~~~~~~~~~~~~~~~----------------------------~~ 1221 (1332)
T KOG4371|consen 1171 VCIKQLTSEPAISHPD-IRVGDVLLYVNGIAVEGKVHQEVVAMLRGGGDR----------------------------VV 1221 (1332)
T ss_pred             eehhhcccCCCCCCCC-cchhhhhhhccceeeechhhHHHHHHHhccCce----------------------------EE
Confidence            3445555444444445 999999999999999999999999999999888                            78


Q ss_pred             eeecccCCCCC--------CCCCceEEEEEEeCCCCCcCEEEEcCcCCCceEEEecc
Q psy1521         125 LVVLRDTVTKE--------DDLLEFVDVELTKKAGKGFGLSLVGRKQGPGVFISDLV  173 (175)
Q Consensus       125 l~v~r~~~~~~--------~~~~~~~~v~l~k~~~~~lGfsi~gg~~~~gi~I~~i~  173 (175)
                      |.+.|+.+.-.        ......+.+.|.+++..++|+++.......||||..|.
T Consensus      1222 ~~~~r~~~~~~d~~~~s~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~ 1278 (1332)
T KOG4371|consen 1222 LGVQRPPPAYSDQHHASSTSASAPLISVMLLKKPMATLGLSLAKRTMSDGIFIRNIA 1278 (1332)
T ss_pred             EEeecCCcccccchhhhhhcccchhhhheeeecccccccccccccCcCCceeeeccc
Confidence            88877765311        11124577788889999999999988877899998764

>KOG3606|consensus

Probab=97.01  E-value=0.00063  Score=53.19  Aligned_cols=40  Identities=38%  Similarity=0.736  Sum_probs=37.4

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIM   41 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l   41 (175)
                      +++|||.|+..|-|..+|.||+|||+.|..++-+++-.++
T Consensus       200 RlVpGGLAeSTGLLaVnDEVlEVNGIEVaGKTLDQVTDMM  239 (358)
T KOG3606|consen  200 RLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTDMM  239 (358)
T ss_pred             eecCCccccccceeeecceeEEEcCEEeccccHHHHHHHH
Confidence            5789999999999999999999999999999998888876

>KOG0606|consensus

Probab=96.94  E-value=0.0014  Score=59.85  Aligned_cols=50  Identities=24%  Similarity=0.302  Sum_probs=46.5

Q ss_pred             EEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCCCC
Q psy1521          46 LVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK   96 (175)
Q Consensus        46 ~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~~~   96 (175)
                      .|.+|.+++||..+| |++||.|+.|||+++.++.|.|++++|-+.+.++.
T Consensus       661 ~v~sv~egsPA~~ag-ls~~DlIthvnge~v~gl~H~ev~~Lll~~gn~v~  710 (1205)
T KOG0606|consen  661 SVGSVEEGSPAFEAG-LSAGDLITHVNGEPVHGLVHTEVMELLLKSGNKVT  710 (1205)
T ss_pred             eeeeecCCCCccccC-CCccceeEeccCcccchhhHHHHHHHHHhcCCeeE
Confidence            478999999999999 99999999999999999999999999998888844

>TIGR02038 protease_degS periplasmic serine pepetdase DegS

Probab=96.92  E-value=0.00076  Score=55.42  Aligned_cols=32  Identities=38%  Similarity=0.531  Sum_probs=29.0

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCH
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQ   34 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~   34 (175)
                      .|.++|||+++| |++||.|++|||.++.++..
T Consensus       284 ~V~~~spA~~aG-L~~GDvI~~Ing~~V~s~~d  315 (351)
T TIGR02038       284 GVDPNGPAARAG-ILVRDVILKYDGKDVIGAEE  315 (351)
T ss_pred             ecCCCChHHHCC-CCCCCEEEEECCEEcCCHHH
Confidence            578999999999 99999999999999987643

This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).

>PRK10898 serine endoprotease; Provisional

Probab=96.88  E-value=0.00082  Score=55.27  Aligned_cols=32  Identities=28%  Similarity=0.386  Sum_probs=29.0

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCH
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQ   34 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~   34 (175)
                      .|.++|||+++| |+.||.|++|||.++.++..
T Consensus       285 ~V~~~spA~~aG-L~~GDvI~~Ing~~V~s~~~  316 (353)
T PRK10898        285 EVSPDGPAAKAG-IQVNDLIISVNNKPAISALE  316 (353)
T ss_pred             EECCCChHHHcC-CCCCCEEEEECCEEcCCHHH
Confidence            578999999999 99999999999999987643

>KOG0609|consensus

Probab=96.87  E-value=0.0013  Score=55.93  Aligned_cols=42  Identities=38%  Similarity=0.694  Sum_probs=39.1

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      +|..||.|++.|.|+.||.|++|||+.+.+.+..++..++++
T Consensus       152 RI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~l~~  193 (542)
T KOG0609|consen  152 RIMHGGMADRQGLLHVGDEILEVNGISVANKSPEELQELLRN  193 (542)
T ss_pred             eeccCCcchhccceeeccchheecCeecccCCHHHHHHHHHh
Confidence            578899999999999999999999999999999999988863

>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]

Probab=96.79  E-value=0.00055  Score=58.05  Aligned_cols=30  Identities=30%  Similarity=0.486  Sum_probs=28.6

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCe
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGE   74 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~   74 (175)
                      ...|+.|.++|||+++| |.+||+|++|||.
T Consensus       463 ~~~i~~V~~~gPA~~AG-l~~Gd~ivai~G~  492 (558)
T COG3975         463 HEKITFVFPGGPAYKAG-LSPGDKIVAINGI  492 (558)
T ss_pred             eeEEEecCCCChhHhcc-CCCccEEEEEcCc
Confidence            56799999999999999 9999999999998

>KOG1320|consensus

Probab=96.76  E-value=0.015  Score=49.25  Aligned_cols=47  Identities=21%  Similarity=0.379  Sum_probs=40.7

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPA   93 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~   93 (175)
                      +++++.|.+++++...+ +++||.|++|||+.+.++  .+...+++.+..
T Consensus       399 ~v~is~Vlp~~~~~~~~-~~~g~~V~~vng~~V~n~--~~l~~~i~~~~~  445 (473)
T KOG1320|consen  399 LVLVSQVLPGSINGGYG-LKPGDQVVKVNGKPVKNL--KHLYELIEECST  445 (473)
T ss_pred             EEEEEEeccCCCccccc-ccCCCEEEEECCEEeech--HHHHHHHHhcCc
Confidence            57899999999999988 999999999999999886  556677776654

>KOG3549|consensus

Probab=96.65  E-value=0.0013  Score=53.16  Aligned_cols=42  Identities=31%  Similarity=0.494  Sum_probs=38.7

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      +|..+-.|+..|.|=.||-||.|||+.|++..|+|++.+|++
T Consensus        86 kI~kdQaAd~tG~LFvGDAilqvNGi~v~~c~HeevV~iLRN  127 (505)
T KOG3549|consen   86 KIYKDQAADITGQLFVGDAILQVNGIYVTACPHEEVVNILRN  127 (505)
T ss_pred             hhhhhhhhhhcCceEeeeeeEEeccEEeecCChHHHHHHHHh
Confidence            566777899999999999999999999999999999999985

>TIGR02860 spore_IV_B stage IV sporulation protein B

Probab=96.63  E-value=0.0036  Score=52.11  Aligned_cols=28  Identities=18%  Similarity=0.503  Sum_probs=25.4

Q ss_pred             CChhhhcCCCCCCCEEEEECCeeCCCCCH
Q psy1521           6 GGIAATDGRLLKGDQIMSVDGTDVRDKSQ   34 (175)
Q Consensus         6 ~~~A~~~G~L~~GD~Il~Vng~~v~~~~~   34 (175)
                      ++||+++| |+.||.|++|||.++.+|..
T Consensus       123 ~SPAa~AG-Lq~GDiIvsING~~V~s~~D  150 (402)
T TIGR02860       123 HSPGEEAG-IQIGDRILKINGEKIKNMDD  150 (402)
T ss_pred             CCHHHHcC-CCCCCEEEEECCEECCCHHH
Confidence            68999999 99999999999999998754

SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.

>KOG3834|consensus

Probab=96.48  E-value=0.011  Score=49.19  Aligned_cols=82  Identities=26%  Similarity=0.282  Sum_probs=60.2

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCcccceeeeee
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKPCPTVPSEPNANATTGEKTTFYFHFQV  123 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (175)
                      |.-|.+|..+++|+++|-.---|-|++|||..|.. ..+....+||..-.+                            |
T Consensus        16 g~hvlkVqedSpa~~aglepffdFIvSI~g~rL~~-dnd~Lk~llk~~sek----------------------------V   66 (462)
T KOG3834|consen   16 GYHVLKVQEDSPAHKAGLEPFFDFIVSINGIRLNK-DNDTLKALLKANSEK----------------------------V   66 (462)
T ss_pred             eEEEEEeecCChHHhcCcchhhhhhheeCcccccC-chHHHHHHHHhcccc----------------------------e
Confidence            66799999999999999445568999999999864 355666666766666                            7


Q ss_pred             eeeecccCCCCCCCCCceEEEEEEeCCCCC---cCEEEEc
Q psy1521         124 KLVVLRDTVTKEDDLLEFVDVELTKKAGKG---FGLSLVG  160 (175)
Q Consensus       124 ~l~v~r~~~~~~~~~~~~~~v~l~k~~~~~---lGfsi~g  160 (175)
                      +|++...+.      ...|.+.+......+   ||++|+-
T Consensus        67 kltv~n~kt------~~~R~v~I~ps~~wggqllGvsvrF  100 (462)
T KOG3834|consen   67 KLTVYNSKT------QEVRIVEIVPSNNWGGQLLGVSVRF  100 (462)
T ss_pred             EEEEEeccc------ceeEEEEecccccccccccceEEEe
Confidence            888764422      356778887655444   7888863

>KOG3542|consensus

Probab=96.44  E-value=0.0012  Score=57.74  Aligned_cols=41  Identities=34%  Similarity=0.666  Sum_probs=38.7

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      .|.||+-|+++| |+-||+|++|||++.++++-..|.++|++
T Consensus       568 ~V~pgskAa~~G-lKRgDqilEVNgQnfenis~~KA~eiLrn  608 (1283)
T KOG3542|consen  568 EVFPGSKAAREG-LKRGDQILEVNGQNFENISAKKAEEILRN  608 (1283)
T ss_pred             eecCCchHHHhh-hhhhhhhhhccccchhhhhHHHHHHHhcC
Confidence            478999999999 99999999999999999999999999975

>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]

Probab=95.67  E-value=0.0041  Score=52.91  Aligned_cols=25  Identities=40%  Similarity=0.719  Sum_probs=23.8

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCe
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGT   27 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~   27 (175)
                      .|.++|||+++| |.+||+|++|||.
T Consensus       468 ~V~~~gPA~~AG-l~~Gd~ivai~G~  492 (558)
T COG3975         468 FVFPGGPAYKAG-LSPGDKIVAINGI  492 (558)
T ss_pred             ecCCCChhHhcc-CCCccEEEEEcCc
Confidence            478999999999 9999999999998

>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous

Probab=95.56  E-value=0.01  Score=42.37  Aligned_cols=31  Identities=35%  Similarity=0.478  Sum_probs=22.9

Q ss_pred             ccCCCChhhhcCCCCC-CCEEEEECCeeCCCCC
Q psy1521           2 RAVPGGIAATDGRLLK-GDQIMSVDGTDVRDKS   33 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~-GD~Il~Vng~~v~~~~   33 (175)
                      +|.|+|||+++| |++ .|.|+.+++..+.+.+
T Consensus        49 ~V~p~SPA~~AG-L~p~~DyIig~~~~~l~~~~   80 (138)
T PF04495_consen   49 RVAPNSPAAKAG-LEPFFDYIIGIDGGLLDDED   80 (138)
T ss_dssp             EE-TTSHHHHTT---TTTEEEEEETTCE--STC
T ss_pred             EecCCCHHHHCC-ccccccEEEEccceecCCHH
Confidence            588999999999 998 6999999998888654

GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.

>KOG0606|consensus

Probab=95.45  E-value=0.012  Score=54.09  Aligned_cols=40  Identities=30%  Similarity=0.383  Sum_probs=38.0

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      .|.+|+||..+| |+.||.|+.|||..+.+..|.++++++-
T Consensus       664 sv~egsPA~~ag-ls~~DlIthvnge~v~gl~H~ev~~Lll  703 (1205)
T KOG0606|consen  664 SVEEGSPAFEAG-LSAGDLITHVNGEPVHGLVHTEVMELLL  703 (1205)
T ss_pred             eecCCCCccccC-CCccceeEeccCcccchhhHHHHHHHHH
Confidence            688999999999 9999999999999999999999999975

>KOG3532|consensus

Probab=95.38  E-value=0.038  Score=48.65  Aligned_cols=48  Identities=23%  Similarity=0.309  Sum_probs=41.4

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .+-|-.|.++++|.++. |++||.+++|||.+++  +..++...++..-..
T Consensus       399 ~v~v~tv~~ns~a~k~~-~~~gdvlvai~~~pi~--s~~q~~~~~~s~~~~  446 (1051)
T KOG3532|consen  399 AVKVCTVEDNSLADKAA-FKPGDVLVAINNVPIR--SERQATRFLQSTTGD  446 (1051)
T ss_pred             EEEEEEecCCChhhHhc-CCCcceEEEecCccch--hHHHHHHHHHhcccc
Confidence            34577899999999998 9999999999999995  568999999876655

>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]

Probab=95.33  E-value=0.017  Score=47.32  Aligned_cols=31  Identities=39%  Similarity=0.574  Sum_probs=28.6

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKS   33 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~   33 (175)
                      .+.|+|||+++| ++.||.|+++||.++.+..
T Consensus       276 ~v~~~spa~~ag-i~~Gdii~~vng~~v~~~~  306 (347)
T COG0265         276 GVLPGSPAAKAG-IKAGDIITAVNGKPVASLS  306 (347)
T ss_pred             ecCCCChHHHcC-CCCCCEEEEECCEEccCHH
Confidence            588999999999 9999999999999998754

>KOG3532|consensus

Probab=95.18  E-value=0.016  Score=50.83  Aligned_cols=49  Identities=14%  Similarity=0.234  Sum_probs=37.4

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCH-HHHHHHhhCCeEEEEec
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQ-EEVATIMKGGILVHDIY   51 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~-~~~~~~l~~gi~V~~v~   51 (175)
                      .|.|+++|.++. |++||.+++|||++++.... ..+++.+.+.+|+..+.
T Consensus       404 tv~~ns~a~k~~-~~~gdvlvai~~~pi~s~~q~~~~~~s~~~~~~~l~~~  453 (1051)
T KOG3532|consen  404 TVEDNSLADKAA-FKPGDVLVAINNVPIRSERQATRFLQSTTGDLTVLVER  453 (1051)
T ss_pred             EecCCChhhHhc-CCCcceEEEecCccchhHHHHHHHHHhcccceEEEEee
Confidence            578999999999 99999999999999986533 23344455667765543

>KOG3129|consensus

Probab=94.95  E-value=0.036  Score=41.97  Aligned_cols=31  Identities=29%  Similarity=0.432  Sum_probs=27.5

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKS   33 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~   33 (175)
                      .|.|+|||+.+| |+.||.|+++..+.--++.
T Consensus       145 sV~~~SPA~~aG-l~~gD~il~fGnV~sgn~~  175 (231)
T KOG3129|consen  145 SVVPGSPADEAG-LCVGDEILKFGNVHSGNFL  175 (231)
T ss_pred             ecCCCChhhhhC-cccCceEEEecccccccch
Confidence            588999999999 9999999999988766665

>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]

Probab=94.22  E-value=0.16  Score=39.43  Aligned_cols=45  Identities=13%  Similarity=0.114  Sum_probs=31.8

Q ss_pred             EEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          47 VHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        47 V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      +.-..+++.-+..| ||.||..++||+.++++  .+++..+|+.....
T Consensus       211 ~~pgkd~slF~~sg-lq~GDIavaiNnldltd--p~~m~~llq~l~~m  255 (275)
T COG3031         211 FEPGKDGSLFYKSG-LQRGDIAVAINNLDLTD--PEDMFRLLQMLRNM  255 (275)
T ss_pred             ecCCCCcchhhhhc-CCCcceEEEecCcccCC--HHHHHHHHHhhhcC
Confidence            33334456667778 99999999999999854  46666666654443

>PRK09681 putative type II secretion protein GspC; Provisional

Probab=94.21  E-value=0.051  Score=43.14  Aligned_cols=35  Identities=14%  Similarity=0.301  Sum_probs=26.5

Q ss_pred             hhhhcCCCCCCCEEEEECCeeCCCCCH-HHHHHHhhC
Q psy1521           8 IAATDGRLLKGDQIMSVDGTDVRDKSQ-EEVATIMKG   43 (175)
Q Consensus         8 ~A~~~G~L~~GD~Il~Vng~~v~~~~~-~~~~~~l~~   43 (175)
                      ...+.| ||+||.+++|||.++.+..+ .++.+.|+.
T Consensus       219 lF~~~G-Lq~GDva~sING~dL~D~~qa~~l~~~L~~  254 (276)
T PRK09681        219 LFDASG-FKEGDIAIALNQQDFTDPRAMIALMRQLPS  254 (276)
T ss_pred             HHHHcC-CCCCCEEEEeCCeeCCCHHHHHHHHHHhcc
Confidence            457788 99999999999999987654 244455554

>KOG1320|consensus

Probab=93.89  E-value=0.041  Score=46.75  Aligned_cols=32  Identities=34%  Similarity=0.668  Sum_probs=29.9

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCH
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQ   34 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~   34 (175)
                      +|.|++++...+ +..||+|++|||++|.|..|
T Consensus       404 ~Vlp~~~~~~~~-~~~g~~V~~vng~~V~n~~~  435 (473)
T KOG1320|consen  404 QVLPGSINGGYG-LKPGDQVVKVNGKPVKNLKH  435 (473)
T ss_pred             EeccCCCccccc-ccCCCEEEEECCEEeechHH
Confidence            688999999999 99999999999999999866

>KOG1738|consensus

Probab=93.82  E-value=0.058  Score=46.90  Aligned_cols=52  Identities=19%  Similarity=0.293  Sum_probs=46.1

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCCC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKA   95 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~~   95 (175)
                      ..+|+.+.+++||+...+|..||.++.||+..+.++.+.-.+..|+.....+
T Consensus       226 ~h~~s~~~e~Spad~~~kI~dgdEv~qiN~qtvVgwqlk~vV~sL~~~~sgi  277 (638)
T KOG1738|consen  226 PHVTSKIFEQSPADYRQKILDGDEVLQINEQTVVGWQLKVVVSSLRETPAGI  277 (638)
T ss_pred             ceeccccccCChHHHhhcccCccceeeecccccccchhHhHHhhcccCcccc
Confidence            4568889999999999999999999999999999999999898888766663

>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A

Probab=92.82  E-value=0.12  Score=33.91  Aligned_cols=26  Identities=27%  Similarity=0.482  Sum_probs=16.6

Q ss_pred             ChhhhcC-CCCCCCEEEEECCeeCCCC
Q psy1521           7 GIAATDG-RLLKGDQIMSVDGTDVRDK   32 (175)
Q Consensus         7 ~~A~~~G-~L~~GD~Il~Vng~~v~~~   32 (175)
                      ||.++-| .++.||.|++|||+++..-
T Consensus        31 sPL~~pGv~v~~GD~I~aInG~~v~~~   57 (88)
T PF14685_consen   31 SPLAQPGVDVREGDYILAINGQPVTAD   57 (88)
T ss_dssp             -GGGGGS----TT-EEEEETTEE-BTT
T ss_pred             CCccCCCCCCCCCCEEEEECCEECCCC
Confidence            6666666 2569999999999999854

>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]

Probab=91.01  E-value=0.35  Score=37.56  Aligned_cols=35  Identities=23%  Similarity=0.533  Sum_probs=27.8

Q ss_pred             CCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           5 PGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         5 ~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      +++..++.| ||.||..+++|+.++.+  ++++..+++
T Consensus       216 d~slF~~sg-lq~GDIavaiNnldltd--p~~m~~llq  250 (275)
T COG3031         216 DGSLFYKSG-LQRGDIAVAINNLDLTD--PEDMFRLLQ  250 (275)
T ss_pred             Ccchhhhhc-CCCcceEEEecCcccCC--HHHHHHHHH
Confidence            466778888 99999999999998874  466666654

>KOG1738|consensus

Probab=89.44  E-value=0.33  Score=42.42  Aligned_cols=42  Identities=14%  Similarity=0.276  Sum_probs=38.4

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      ++.+++||....++.+||.++.||+..|..|.+.-++..++.
T Consensus       231 ~~~e~Spad~~~kI~dgdEv~qiN~qtvVgwqlk~vV~sL~~  272 (638)
T KOG1738|consen  231 KIFEQSPADYRQKILDGDEVLQINEQTVVGWQLKVVVSSLRE  272 (638)
T ss_pred             ccccCChHHHhhcccCccceeeecccccccchhHhHHhhccc
Confidence            577899999999999999999999999999999988888763

>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]

Probab=89.32  E-value=0.89  Score=37.37  Aligned_cols=42  Identities=29%  Similarity=0.408  Sum_probs=33.9

Q ss_pred             EEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcC
Q psy1521          47 VHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLT   91 (175)
Q Consensus        47 V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~   91 (175)
                      +..+..+++|+.+| |++||+++++|+..+.+  .++....+...
T Consensus       133 ~~~v~~~s~a~~a~-l~~Gd~iv~~~~~~i~~--~~~~~~~~~~~  174 (375)
T COG0750         133 VGEVAPKSAAALAG-LRPGDRIVAVDGEKVAS--WDDVRRLLVAA  174 (375)
T ss_pred             eeecCCCCHHHHcC-CCCCCEEEeECCEEccC--HHHHHHHHHhc
Confidence            44688999999999 99999999999999965  46655555443

>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]

Probab=88.17  E-value=0.51  Score=38.79  Aligned_cols=31  Identities=39%  Similarity=0.572  Sum_probs=28.6

Q ss_pred             cCCCChhhhcCCCCCCCEEEEECCeeCCCCCH
Q psy1521           3 AVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQ   34 (175)
Q Consensus         3 v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~   34 (175)
                      +.++++|+.+| ++.||+++++|+.++..+..
T Consensus       136 v~~~s~a~~a~-l~~Gd~iv~~~~~~i~~~~~  166 (375)
T COG0750         136 VAPKSAAALAG-LRPGDRIVAVDGEKVASWDD  166 (375)
T ss_pred             cCCCCHHHHcC-CCCCCEEEeECCEEccCHHH
Confidence            67889999999 99999999999999998865

>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]

Probab=86.87  E-value=1  Score=36.50  Aligned_cols=37  Identities=24%  Similarity=0.456  Sum_probs=29.1

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      .+..+++|  .|+|..||.|++|||.++.+  .++.+..++
T Consensus       136 ~v~~~~~~--~gkl~~gD~i~avdg~~f~s--~~e~i~~v~  172 (342)
T COG3480         136 SVIDNSPF--KGKLEAGDTIIAVDGEPFTS--SDELIDYVS  172 (342)
T ss_pred             EccCCcch--hceeccCCeEEeeCCeecCC--HHHHHHHHh
Confidence            35567777  78899999999999999875  466666654

>KOG3938|consensus

Probab=85.53  E-value=0.26  Score=38.81  Aligned_cols=42  Identities=26%  Similarity=0.417  Sum_probs=37.2

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      .|-+||.-.+--.++.||.|=+|||.++..+.|-++.++|+.
T Consensus       155 rIkegsvidri~~i~VGd~IEaiNge~ivG~RHYeVArmLKe  196 (334)
T KOG3938|consen  155 RIKEGSVIDRIEAICVGDHIEAINGESIVGKRHYEVARMLKE  196 (334)
T ss_pred             eecCCchhhhhhheeHHhHHHhhcCccccchhHHHHHHHHHh
Confidence            356788888877799999999999999999999999999874

>PF07591 PT-HINT: Pretoxin HINT domain; InterPro: IPR011451 This entry represents a cluster of homologous proteins identified in Leptospira interrogans

Probab=84.65  E-value=0.54  Score=33.07  Aligned_cols=57  Identities=23%  Similarity=0.335  Sum_probs=12.3

Q ss_pred             CCCCCEEEEECCeeCC-------CCCHHHHHHHhh-------------CCeEEEEecCCCcccccCCcCCCCEEEEECCe
Q psy1521          15 LLKGDQIMSVDGTDVR-------DKSQEEVATIMK-------------GGILVHDIYPEGAAAKDARLKFGDQILELTGE   74 (175)
Q Consensus        15 L~~GD~Il~Vng~~v~-------~~~~~~~~~~l~-------------~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~   74 (175)
                      ++.||++++-|...-.       ..-..+..++++             -++|+..   ++ .-+++.|++||+|+..+|.
T Consensus        14 I~~GD~Vls~d~~tg~~~~~~V~~~f~~~~~~l~~i~~~~~~i~~T~~HPF~~~~---~g-Wv~A~~L~~GD~L~~~~G~   89 (130)
T PF07591_consen   14 IKVGDRVLSYDEETGETEYKPVTATFVRETDELVDITLEDETITTTPNHPFWVEG---KG-WVEAEDLKVGDRLLTADGS   89 (130)
T ss_dssp             --------------------------------------------------------------EEGGG--TTSEEEEE-SS
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccch---Hh-hhhHhhCCCCCEEEcCCCC
Confidence            8999999999865321       111111111111             1444431   23 3344569999999999996


Q ss_pred             e
Q psy1521          75 D   75 (175)
Q Consensus        75 ~   75 (175)
                      .
T Consensus        90 ~   90 (130)
T PF07591_consen   90 W   90 (130)
T ss_dssp             E
T ss_pred             E
Confidence            5

One member (Q8EZX6 from SWISSPROT) has been predicted to be a phenazine biosynthesis family protein.; PDB: 2JNQ_A 2JMZ_A.

>PF12812 PDZ_1: PDZ-like domain

Probab=83.41  E-value=1.3  Score=28.29  Aligned_cols=27  Identities=37%  Similarity=0.479  Sum_probs=21.3

Q ss_pred             CChhhhcCCCCCCCEEEEECCeeCCCCC
Q psy1521           6 GGIAATDGRLLKGDQIMSVDGTDVRDKS   33 (175)
Q Consensus         6 ~~~A~~~G~L~~GD~Il~Vng~~v~~~~   33 (175)
                      |+++. ++.+..|-.|.+|||+++.++.
T Consensus        40 g~~~~-~~~i~~g~iI~~Vn~kpt~~Ld   66 (78)
T PF12812_consen   40 GSLAF-AGGISKGFIITSVNGKPTPDLD   66 (78)
T ss_pred             CChhh-hCCCCCCeEEEeECCcCCcCHH
Confidence            44444 4449999999999999998874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	175
2dm8_A	116	Solution Structure Of The Eighth Pdz Domain Of Huma		1e-11
2opg_A	98	The Crystal Structure Of The 10th Pdz Domain Of Mpd		6e-11
2qg1_A	92	Crystal Structure Of The 11th Pdz Domain Of Mpdz (M		3e-07
2qg1_A	92	Crystal Structure Of The 11th Pdz Domain Of Mpdz (M		5e-05
2fne_A	117	The Crystal Structure Of The 13th Pdz Domain Of Mpd		9e-06
1q7x_A	108	Solution Structure Of The Alternatively Spliced Pdz		2e-05
2xkx_A	721	Single Particle Analysis Of Psd-95 In Negative Stai		5e-05
2daz_A	124	Solution Structure Of The 7th Pdz Domain Of Inad-Li		5e-05
3pdz_A	96	Solution Structure Of The Pdz2 Domain From Human Ph		6e-05
1gm1_A	94	Second Pdz Domain (Pdz2) Of Ptp-Bl Length = 94		6e-05
1d5g_A	96	Solution Structure Of The Pdz2 Domain From Human Ph		6e-05
2eno_A	120	Solution Structure Of The Pdz Domain From Human Syn		7e-05
2jin_A	102	Crystal Structure Of Pdz Domain Of Synaptojanin-2 B		7e-05
1vj6_A	102	Pdz2 From Ptp-Bl In Complex With The C-Terminal Lig		7e-05
1ozi_A	99	The Alternatively Spliced Pdz2 Domain Of Ptp-Bl Len		7e-05
2jik_A	101	Crystal Structure Of Pdz Domain Of Synaptojanin-2 B		8e-05
3r0h_A	206	Structure Of Inad Pdz45 In Complex With Ng2 Peptide		1e-04
3gsl_A	196	Crystal Structure Of Psd-95 Tandem Pdz Domains 1 An		1e-04
2ka9_A	189	Solution Structure Of Psd-95 Pdz12 Complexed With C		1e-04
2dlu_A	111	Solution Structure Of The Second Pdz Domain Of Huma		1e-04
3zrt_A	199	Crystal Structure Of Human Psd-95 Pdz1-2 Length = 1		2e-04
2koj_A	111	Solution Structure Of Mouse Par-3 Pdz2 (Residues 45		2e-04
2koj_A	111	Solution Structure Of Mouse Par-3 Pdz2 (Residues 45		4e-04
2ogp_A	97	Solution Structure Of The Second Pdz Domain Of Par-		3e-04
2ogp_A	97	Solution Structure Of The Second Pdz Domain Of Par-		3e-04
1uju_A	111	Solution Structure Of The Fourth Pdz Domain Of Huma		3e-04
2q9v_A	90	Crystal Structure Of The C890s Mutant Of The 4th Pd		3e-04
1x6d_A	119	Solution Structures Of The Pdz Domain Of Human Inte		3e-04
1wfv_A	103	Solution Structure Of The Fifth Pdz Domain Of Human		4e-04
2kom_A	121	Solution Structure Of Humar Par-3b Pdz2 (Residues 4		4e-04
2kom_A	121	Solution Structure Of Humar Par-3b Pdz2 (Residues 4		4e-04
2wl7_A	102	Crystal Structure Of The Psd93 Pdz1 Domain Length =		5e-04
3k82_A	98	Crystal Structure Of The Third Pdz Domain Of Psd-95		5e-04
2he2_A	102	Crystal Structure Of The 3rd Pdz Domain Of Human Di		5e-04
1be9_A	119	The Third Pdz Domain From The Synaptic Protein Psd-		5e-04
3i4w_A	104	Crystal Structure Of The Third Pdz Domain Of Psd-95		5e-04
1zok_A	93	Pdz1 Domain Of Synapse Associated Protein 97 Length		6e-04
2koh_A	111	Nmr Structure Of Mouse Par3-Pdz3 In Complex With Ve		6e-04
3rl7_B	107	Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc L		6e-04
2k1z_A	104	Solution Structure Of Par-3 Pdz3 Length = 104		6e-04
1tp3_A	119	Pdz3 Domain Of Psd-95 Protein Complexed With Kketpv		6e-04
1rgr_A	99	Cyclic Peptides Targeting Pdz Domains Of Psd-95: St		7e-04
1kef_A	93	Pdz1 Of Sap90 Length = 93		7e-04
1iu0_A	91	The First Pdz Domain Of Psd-95 Length = 91		7e-04
1x5n_A	114	Solution Structure Of The Second Pdz Domain Of Harm		9e-04

>pdb|2DM8|A Chain A, Solution Structure Of The Eighth Pdz Domain Of Human Inad- Like Protein Length = 116

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 28/52 (53%), Positives = 38/52 (73%)
Query: 45 ILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK 96
          I++H++Y EGAAA+D RL  GDQILE+ G D RN +H +A+  LR TP K +
Sbjct: 45 IVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEAITALRQTPQKVR 96

>pdb|2OPG|A Chain A, The Crystal Structure Of The 10th Pdz Domain Of Mpdz Length = 98

Iteration: 1
 Score = 63.5 bits (153), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 28/56 (50%), Positives = 38/56 (67%)
Query: 41 MKGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK 96
          + G I++H++Y EGAA KD RL  GDQILE+ G D R  TH +A+  LR TP + +
Sbjct: 28 LLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQTPQRVR 83

>pdb|2QG1|A Chain A, Crystal Structure Of The 11th Pdz Domain Of Mpdz (Mupp1) Length = 92

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 23/39 (58%), Positives = 31/39 (79%)
Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
          V GGIA  DGRL++GDQI+ V+G DVR+ +QE VA ++K
Sbjct: 37 VKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLK 75

>pdb|2QG1|A Chain A, Crystal Structure Of The 11th Pdz Domain Of Mpdz (Mupp1) Length = 92

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 26/48 (54%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLT 91
          G+ V DI   G A  D RL  GDQIL + GED RN T     A L+ +
Sbjct: 30 GVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLKCS 77

>pdb|2FNE|A Chain A, The Crystal Structure Of The 13th Pdz Domain Of Mpdz Length = 117

Iteration: 1
 Score = 46.2 bits (108), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 32/47 (68%)
Query: 45  ILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLT 91
           I V  ++ +GAA++D RLK GDQI+ + G+    +TH +A+A L+ T
Sbjct: 55  IYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRT 101

>pdb|1Q7X|A Chain A, Solution Structure Of The Alternatively Spliced Pdz2 Domain (Pdz2b) Of Ptp-Bas (Hptp1e) Length = 108

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 15 LLKGDQIMSVDGTDVRDKSQEEVATIMKGGILVHDIYPEGAAAKDARLKFGDQILELTGE 74
          L K D  + +  T + DK      ++  GGI V  + P+GAA  D R+  GD++L + G 
Sbjct: 15 LAKNDNSLGISVTVLFDKGGVN-TSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGV 73
Query: 75 DFRNITHAKAMAHLRLT 91
               TH +A+  LR T
Sbjct: 74 SLEGATHKQAVETLRNT 90

>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain Length = 721

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 59/245 (24%), Positives = 92/245 (37%), Gaps = 79/245 (32%)
Query: 2   RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQ-------EEVATIMK------------ 42
           + +PGG AA DGRL   D I+ V+  DVR+ +        +E  +I++            
Sbjct: 95  KIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEK 154
Query: 43  ------------------GG-----------ILVHDIYPEGAAAKDARLKFGDQILELTG 73
                             GG           I V  I   GAA KD RL+ GD+IL +  
Sbjct: 155 VMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNS 214
Query: 74  EDFRNITHAKAMAHLRLTP-----AKAKPCPTVPSEPNANATTGEKTTFYFHFQVKLV-- 126
               ++ H  A+A L+ T        AKP     S  ++ A     T++  H   ++   
Sbjct: 215 VGLEDVMHEDAVAALKNTYDVVYLKVAKPSNAYLS--DSYAPPDITTSYSQHLDNEISHS 272
Query: 127 ---------------------VLRDTVTKEDDLLEFVDVELTKKAGKGFGLSLVGRKQGP 165
                                V +D + +ED   E   + +  +   G G ++VG + G 
Sbjct: 273 SYLGTDYPTAMTPTSPRRYSPVAKDLLGEEDIPREPRRI-VIHRGSTGLGFNIVGGEDGE 331
Query: 166 GVFIS 170
           G+FIS
Sbjct: 332 GIFIS 336

>pdb|2DAZ|A Chain A, Solution Structure Of The 7th Pdz Domain Of Inad-Like Protein Length = 124

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 45  ILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK 96
           I V  I PEG AA D R++ GD++LE+  +     +H  A A ++  P+K K
Sbjct: 53  IFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNASAIIKTAPSKVK 104

>pdb|3PDZ|A Chain A, Solution Structure Of The Pdz2 Domain From Human Phosphatase Hptp1e Length = 96

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 30/53 (56%)
Query: 39 TIMKGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLT 91
          ++  GGI V  + P+GAA  D R+  GD++L + G      TH +A+  LR T
Sbjct: 29 SVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNT 81

>pdb|1GM1|A Chain A, Second Pdz Domain (Pdz2) Of Ptp-Bl Length = 94

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 30/53 (56%)
Query: 39 TIMKGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLT 91
          ++  GGI V  I P+GAA  D R+  GD++L + G      TH +A+  LR T
Sbjct: 28 SVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNT 80

>pdb|1D5G|A Chain A, Solution Structure Of The Pdz2 Domain From Human Phosphatase Hptp1e Complexed With A Peptide Length = 96

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 30/53 (56%)
Query: 39 TIMKGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLT 91
          ++  GGI V  + P+GAA  D R+  GD++L + G      TH +A+  LR T
Sbjct: 29 SVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNT 81

>pdb|2ENO|A Chain A, Solution Structure Of The Pdz Domain From Human Synaptojanin 2 Binding Protein Length = 120

Iteration: 1
 Score = 43.5 bits (101), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 28/46 (60%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
          GI V  I   GAAA D RL+ GD+IL + G+D +N+ H  A+   R
Sbjct: 48 GIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFR 93

>pdb|2JIN|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding Protein Length = 102

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 28/46 (60%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
          GI V  I   GAAA D RL+ GD+IL + G+D +N+ H  A+   R
Sbjct: 40 GIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFR 85

>pdb|1VJ6|A Chain A, Pdz2 From Ptp-Bl In Complex With The C-Terminal Ligand From The Apc Protein Length = 102

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 30/53 (56%)
Query: 39 TIMKGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLT 91
          ++  GGI V  I P+GAA  D R+  GD++L + G      TH +A+  LR T
Sbjct: 36 SVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNT 88

>pdb|1OZI|A Chain A, The Alternatively Spliced Pdz2 Domain Of Ptp-Bl Length = 99

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 30/53 (56%)
Query: 39 TIMKGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLT 91
          ++  GGI V  I P+GAA  D R+  GD++L + G      TH +A+  LR T
Sbjct: 33 SVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNT 85

>pdb|2JIK|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding Protein Length = 101

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 28/46 (60%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
          GI V  I   GAAA D RL+ GD+IL + G+D +N+ H  A+   R
Sbjct: 38 GIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFR 83

>pdb|3R0H|A Chain A, Structure Of Inad Pdz45 In Complex With Ng2 Peptide Length = 206

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 55/131 (41%), Gaps = 31/131 (23%)
Query: 44  GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKPCPTVPS 103
           G ++  +YPEG  A D RLK  D I ++ G       H  +M  L++             
Sbjct: 46  GCVITHVYPEGQVAADKRLKIFDHICDINGTPI----HVGSMTTLKVH------------ 89
Query: 104 EPNANATTGEKTTFYFHFQVKLVVLRDTVTKEDDLLEFVDVELTKKAGKGFGLSLVGRKQ 163
                 TT EK        V L V R     +   LE  +V+L KKAGK  GLSL   + 
Sbjct: 90  --QLFHTTYEKA-------VTLTVFR----ADPPELEKFNVDLMKKAGKELGLSLSPNEI 136
Query: 164 GPGVFISDLVS 174
             G  I+DL+ 
Sbjct: 137 --GCTIADLIQ 145

>pdb|3GSL|A Chain A, Crystal Structure Of Psd-95 Tandem Pdz Domains 1 And 2 Length = 196

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 56/138 (40%), Gaps = 48/138 (34%)
Query: 2   RAVPGGIAATDGRLLKGDQIMSVDGTDVRD-------KSQEEVATIMK------------ 42
           + +PGG AA DGRL   D I+ V+  DVR+       ++ +E  +I++            
Sbjct: 41  KIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEK 100
Query: 43  ------------------GG-----------ILVHDIYPEGAAAKDARLKFGDQILELTG 73
                             GG           I V  I   GAA KD RL+ GD+IL +  
Sbjct: 101 VMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNS 160
Query: 74  EDFRNITHAKAMAHLRLT 91
               ++ H  A+A L+ T
Sbjct: 161 VGLEDVMHEDAVAALKNT 178

>pdb|2KA9|A Chain A, Solution Structure Of Psd-95 Pdz12 Complexed With Cypin Peptide Length = 189

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 56/138 (40%), Gaps = 48/138 (34%)
Query: 2   RAVPGGIAATDGRLLKGDQIMSVDGTDVRD-------KSQEEVATIMK------------ 42
           + +PGG AA DGRL   D I+ V+  DVR+       ++ +E  +I++            
Sbjct: 38  KIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEK 97
Query: 43  ------------------GG-----------ILVHDIYPEGAAAKDARLKFGDQILELTG 73
                             GG           I V  I   GAA KD RL+ GD+IL +  
Sbjct: 98  VMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNS 157
Query: 74  EDFRNITHAKAMAHLRLT 91
               ++ H  A+A L+ T
Sbjct: 158 VGLEDVMHEDAVAALKNT 175

>pdb|2DLU|A Chain A, Solution Structure Of The Second Pdz Domain Of Human Inad- Like Protein Length = 111

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 28/39 (71%)
Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
          VPGG+A  DGRL  GD I+ + GT+V+  + E+VA +++
Sbjct: 46 VPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVLR 84

>pdb|3ZRT|A Chain A, Crystal Structure Of Human Psd-95 Pdz1-2 Length = 199

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 55/138 (39%), Gaps = 48/138 (34%)
Query: 2   RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQ-------EEVATIMK------------ 42
           + +PGG AA DGRL   D I+ V+  DVR+ +        +E  +I++            
Sbjct: 48  KIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEK 107
Query: 43  ------------------GG-----------ILVHDIYPEGAAAKDARLKFGDQILELTG 73
                             GG           I V  I   GAA KD RL+ GD+IL +  
Sbjct: 108 VMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNS 167
Query: 74  EDFRNITHAKAMAHLRLT 91
               ++ H  A+A L+ T
Sbjct: 168 VGLEDVMHEDAVAALKNT 185

>pdb|2KOJ|A Chain A, Solution Structure Of Mouse Par-3 Pdz2 (Residues 450-558) Length = 111

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 28/39 (71%)
Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
          +P G A  DGRL  GD+++ V+G D+  KSQEEV ++++
Sbjct: 47 LPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLR 85

>pdb|2KOJ|A Chain A, Solution Structure Of Mouse Par-3 Pdz2 (Residues 450-558) Length = 111

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 45 ILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLT 91
          I V +I P GAA +D RLK GD+++E+ G D    +  + ++ LR T
Sbjct: 41 IYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLRST 87

>pdb|2OGP|A Chain A, Solution Structure Of The Second Pdz Domain Of Par-3 Length = 97

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 28/39 (71%)
Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
          +P G A  DGRL  GD+++ V+G D+  KSQEEV ++++
Sbjct: 41 LPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLR 79

>pdb|2OGP|A Chain A, Solution Structure Of The Second Pdz Domain Of Par-3 Length = 97

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 45 ILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLT 91
          I V +I P GAA +D RLK GD+++E+ G D    +  + ++ LR T
Sbjct: 35 IYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLRST 81

>pdb|1UJU|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Human Scribble (Kiaa0147 Protein) Length = 111

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 28/46 (60%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
          GI +  + P GAA +D RL+ G ++LE+  +    +TH +A+  LR
Sbjct: 45 GIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLR 90

>pdb|2Q9V|A Chain A, Crystal Structure Of The C890s Mutant Of The 4th Pdz Domain Of Human Membrane Associated Guanylate Kinase Length = 90

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/39 (53%), Positives = 27/39 (69%)
Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
          VP G A TDGRL  GD+++SVDGT V  KS + V  +M+
Sbjct: 35 VPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVVQLMQ 73

>pdb|1X6D|A Chain A, Solution Structures Of The Pdz Domain Of Human Interleukin- 16 Length = 119

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 10/82 (12%)
Query: 18 GDQIMSVDGTDVRDKSQEEVATI---MKGG-------ILVHDIYPEGAAAKDARLKFGDQ 67
          G  +  +DG  V    +EE A +   + GG       I VH ++P G A+++  ++ G++
Sbjct: 7  GATLKQLDGIHVTILHKEEGAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNE 66
Query: 68 ILELTGEDFRNITHAKAMAHLR 89
          +L + G+  +  TH  A+A LR
Sbjct: 67 VLSINGKSLKGTTHHDALAILR 88

>pdb|1WFV|A Chain A, Solution Structure Of The Fifth Pdz Domain Of Human Membrane Associated Guanylate Kinase Inverted-2 (Kiaa0705 Protein) Length = 103

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 16/41 (39%), Positives = 29/41 (70%)
Query: 45 ILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAM 85
          + V  +  +G A ++ R++ GDQI+E+ GE  R++THA+A+
Sbjct: 38 LYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAI 78

>pdb|2KOM|A Chain A, Solution Structure Of Humar Par-3b Pdz2 (Residues 451-549) Length = 121

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 28/39 (71%)
Query: 4   VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
           +P G A  DGRL  GD+++ V+G D+  KSQEEV ++++
Sbjct: 66  LPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLR 104

>pdb|2KOM|A Chain A, Solution Structure Of Humar Par-3b Pdz2 (Residues 451-549) Length = 121

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 45  ILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLT 91
           I V +I P GAA +D RLK GD+++E+ G D    +  + ++ LR T
Sbjct: 60  IYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLRST 106

>pdb|2WL7|A Chain A, Crystal Structure Of The Psd93 Pdz1 Domain Length = 102

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 28/46 (60%)
Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
          GI +  I P GAAA+D RL+  D IL +   D   ++H+KA+  L+
Sbjct: 40 GIFITKIIPGGAAAEDGRLRVNDCILRVNEVDVSEVSHSKAVEALK 85

>pdb|3K82|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95 Length = 98

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 19/39 (48%), Positives = 26/39 (66%)
Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
          + GG A   G L KGDQI+SV+G D+R+ S E+ A  +K
Sbjct: 38 LAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALK 76

>pdb|2HE2|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Human Discs Large Homologue 2, Dlg2 Length = 102

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG----ILVHDIYPEGAAAKD 59
          + GG A   G L +GDQI+SV+G D+R  S E+ A  +KG      ++    PE  A  +
Sbjct: 35 LAGGPADLSGELQRGDQILSVNGIDLRGASHEQAAAALKGAGQTVTIIAQYQPEDYARFE 94
Query: 60 ARL 62
          A++
Sbjct: 95 AKI 97

>pdb|1BE9|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95 In Complex With A C-Terminal Peptide Derived From Cript. Length = 119

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 19/37 (51%), Positives = 25/37 (67%)
Query: 6  GGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
          GG A   G L KGDQI+SV+G D+R+ S E+ A  +K
Sbjct: 48 GGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALK 84

>pdb|3I4W|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95 Length = 104

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 19/39 (48%), Positives = 26/39 (66%)
Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
          + GG A   G L KGDQI+SV+G D+R+ S E+ A  +K
Sbjct: 43 LAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALK 81

>pdb|1ZOK|A Chain A, Pdz1 Domain Of Synapse Associated Protein 97 Length = 93

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 28/45 (62%)
Query: 45 ILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
          I +  I   GAAA+D RL+  D IL +   D R++TH+KA+  L+
Sbjct: 33 IFITKIITGGAAAQDGRLRVNDCILRVNEADVRDVTHSKAVEALK 77

>pdb|2KOH|A Chain A, Nmr Structure Of Mouse Par3-Pdz3 In Complex With Ve-Cadherin C-Terminus Length = 111

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 31 DKSQEEVATIMKGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
          ++S+E  A +   GI V  I   GAA+KD RL+  DQ++ + GE      + +AM  LR
Sbjct: 30 NRSKENHADL---GIFVKSIINGGAASKDGRLRVNDQLIAVNGESLLGKANQEAMETLR 85

>pdb|3RL7|B Chain B, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc Length = 107

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 7/60 (11%)
Query: 45  ILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHL-------RLTPAKAKP 97
           I +  I   GAAA+D RL+  D IL +   D R++TH+KA+  L       RL   + KP
Sbjct: 43  IFITKIITGGAAAQDGRLRVNDCILRVNEVDVRDVTHSKAVEALKEAGSIVRLYVKRRKP 102

>pdb|2K1Z|A Chain A, Solution Structure Of Par-3 Pdz3 Length = 104

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 31 DKSQEEVATIMKGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
          ++S+E  A +   GI V  I   GAA+KD RL+  DQ++ + GE      + +AM  LR
Sbjct: 27 NRSKENHADL---GIFVKSIINGGAASKDGRLRVNDQLIAVNGESLLGKANQEAMETLR 82

>pdb|1TP3|A Chain A, Pdz3 Domain Of Psd-95 Protein Complexed With Kketpv Peptide Ligand Length = 119

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/37 (51%), Positives = 25/37 (67%)
Query: 6  GGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
          GG A   G L KGDQI+SV+G D+R+ S E+ A  +K
Sbjct: 48 GGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALK 84

>pdb|1RGR|A Chain A, Cyclic Peptides Targeting Pdz Domains Of Psd-95: Structural Basis For Enhanced Affinity And Enzymatic Stability Length = 99

Iteration: 1
 Score = 40.0 bits (92), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 27/45 (60%)
Query: 45 ILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
          I +  I P GAAA+D RL+  D IL +   D R +TH+ A+  L+
Sbjct: 33 IFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALK 77

>pdb|1KEF|A Chain A, Pdz1 Of Sap90 Length = 93

Iteration: 1
 Score = 40.0 bits (92), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 27/45 (60%)
Query: 45 ILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
          I +  I P GAAA+D RL+  D IL +   D R +TH+ A+  L+
Sbjct: 33 IFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALK 77

>pdb|1IU0|A Chain A, The First Pdz Domain Of Psd-95 Length = 91

Iteration: 1
 Score = 40.0 bits (92), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 27/45 (60%)
Query: 45 ILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
          I +  I P GAAA+D RL+  D IL +   D R +TH+ A+  L+
Sbjct: 34 IFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALK 78

>pdb|1X5N|A Chain A, Solution Structure Of The Second Pdz Domain Of Harmonin Protein Length = 114

Iteration: 1
 Score = 39.7 bits (91), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 40 IMKGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
          I K GI +  + P G+ + +  L+ GDQI+E+ G DF N+ H +A+  L+
Sbjct: 38 IQKPGIFISHVKP-GSLSAEVGLEIGDQIVEVNGVDFSNLDHKEAVNVLK 86

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	175
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	1e-20
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	7e-15
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	1e-18
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	9e-16
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	1e-18
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	3e-18
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	8e-18
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	1e-11
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	2e-09
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	4e-07
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	1e-15
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	2e-10
2opg_A	98	Multiple PDZ domain protein; structural protein, s	1e-14
2opg_A	98	Multiple PDZ domain protein; structural protein, s	4e-10
2dm8_A	116	INAD-like protein; PDZ domain, inadl protein, hina	1e-14
2dm8_A	116	INAD-like protein; PDZ domain, inadl protein, hina	3e-10
2kpk_A	129	Membrane-associated guanylate kinase, WW and PDZ c	3e-14
2kpk_A	129	Membrane-associated guanylate kinase, WW and PDZ c	6e-10
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	3e-14
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	2e-09
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	2e-09
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	2e-08
1x6d_A	119	Interleukin-16; PDZ domain, lymphocyte chemoattrac	4e-14
1x6d_A	119	Interleukin-16; PDZ domain, lymphocyte chemoattrac	2e-10
3cbz_A	108	Dishevelled-2; PDZ domain, phage derived high affi	6e-14
3cbz_A	108	Dishevelled-2; PDZ domain, phage derived high affi	1e-09
2daz_A	124	INAD-like protein; PDZ domain, inadl protein, hina	8e-14
2daz_A	124	INAD-like protein; PDZ domain, inadl protein, hina	1e-09
1ueq_A	123	Membrane associated guanylate kinase inverted-2 (M	9e-14
1ueq_A	123	Membrane associated guanylate kinase inverted-2 (M	5e-10
1wg6_A	127	Hypothetical protein (riken cDNA 2810455B10); stru	9e-14
1wg6_A	127	Hypothetical protein (riken cDNA 2810455B10); stru	1e-09
1wf8_A	107	Neurabin-I; PDZ domain, structural genomics, NPPSF	1e-13
1wf8_A	107	Neurabin-I; PDZ domain, structural genomics, NPPSF	7e-10
1q7x_A	108	PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, str	1e-13
1q7x_A	108	PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, str	9e-10
1uju_A	111	Scribble; PDZ domain, cellular signaling, structur	1e-13
1uju_A	111	Scribble; PDZ domain, cellular signaling, structur	2e-09
1um1_A	110	KIAA1849 protein, RSGI RUH-007; PDZ domain, human	1e-13
1um1_A	110	KIAA1849 protein, RSGI RUH-007; PDZ domain, human	3e-10
1v6b_A	118	Harmonin isoform A1; structural genomics, usher sy	2e-13
1v6b_A	118	Harmonin isoform A1; structural genomics, usher sy	7e-10
2rcz_A	81	Tight junction protein ZO-1; PDZ, domain-swapping,	2e-13
2rcz_A	81	Tight junction protein ZO-1; PDZ, domain-swapping,	6e-10
1d5g_A	96	Human phosphatase HPTP1E; protein-peptide complex,	2e-13
1d5g_A	96	Human phosphatase HPTP1E; protein-peptide complex,	5e-10
2eno_A	120	Synaptojanin-2-binding protein; mitochondrial oute	2e-13
2eno_A	120	Synaptojanin-2-binding protein; mitochondrial oute	2e-09
2byg_A	117	Channel associated protein of synapse-110; DLG2, P	2e-13
2byg_A	117	Channel associated protein of synapse-110; DLG2, P	3e-10
3axa_A	106	Afadin, nectin-3, protein AF-6; PDZ domain, fusion	2e-13
3axa_A	106	Afadin, nectin-3, protein AF-6; PDZ domain, fusion	5e-11
1wfv_A	103	Membrane associated guanylate kinase inverted-2; a	3e-13
1wfv_A	103	Membrane associated guanylate kinase inverted-2; a	4e-09
2koj_A	111	Partitioning defective 3 homolog; PDZ domain, stru	4e-13
2koj_A	111	Partitioning defective 3 homolog; PDZ domain, stru	3e-11
2i1n_A	102	Discs, large homolog 3; DLG3, PDZ, PDZ domain, sig	4e-13
2i1n_A	102	Discs, large homolog 3; DLG3, PDZ, PDZ domain, sig	2e-09
3egg_C	170	Spinophilin; PP1, serine/threonine phosphatase, po	4e-13
3egg_C	170	Spinophilin; PP1, serine/threonine phosphatase, po	1e-09
2awx_A	105	Synapse associated protein 97; membrane protein, s	4e-13
2awx_A	105	Synapse associated protein 97; membrane protein, s	3e-09
2jik_A	101	Synaptojanin-2 binding protein; transmembrane, out	4e-13
2jik_A	101	Synaptojanin-2 binding protein; transmembrane, out	1e-09
1wi4_A	109	Synip, syntaxin binding protein 4; syntaxin4-inter	5e-13
1wi4_A	109	Synip, syntaxin binding protein 4; syntaxin4-inter	6e-11
1uhp_A	107	Hypothetical protein KIAA1095; PDZ domain, semapho	5e-13
1uhp_A	107	Hypothetical protein KIAA1095; PDZ domain, semapho	2e-09
1tp5_A	119	Presynaptic density protein 95; PDZ-peptide ligand	5e-13
1tp5_A	119	Presynaptic density protein 95; PDZ-peptide ligand	7e-10
2jre_A	108	C60-1 PDZ domain peptide; de novo protein; NMR {Sy	5e-13
2jre_A	108	C60-1 PDZ domain peptide; de novo protein; NMR {Sy	5e-10
2fe5_A	94	Presynaptic protein SAP102; PDZ domain, DLG3, huma	6e-13
2fe5_A	94	Presynaptic protein SAP102; PDZ domain, DLG3, huma	3e-09
2qkv_A	96	Inactivation-NO-after-potential D protein; PDZ dom	6e-13
2qkv_A	96	Inactivation-NO-after-potential D protein; PDZ dom	3e-12
2qkv_A	96	Inactivation-NO-after-potential D protein; PDZ dom	2e-06
2dlu_A	111	INAD-like protein; PDZ domain, inadl protein, hina	6e-13
2dlu_A	111	INAD-like protein; PDZ domain, inadl protein, hina	3e-11
3cyy_A	92	Tight junction protein ZO-1; protein-ligand comple	6e-13
3cyy_A	92	Tight junction protein ZO-1; protein-ligand comple	1e-09
2kom_A	121	Partitioning defective 3 homolog; PAR-3B, PDZ doma	7e-13
2kom_A	121	Partitioning defective 3 homolog; PAR-3B, PDZ doma	2e-11
1um7_A	113	Synapse-associated protein 102; PDZ, discs large h	7e-13
1um7_A	113	Synapse-associated protein 102; PDZ, discs large h	1e-09
3b76_A	118	E3 ubiquitin-protein ligase LNX; PDZ, bound ligand	7e-13
3b76_A	118	E3 ubiquitin-protein ligase LNX; PDZ, bound ligand	2e-10
1wha_A	105	KIAA0147 protein, scribble; PDZ domain, cellular s	7e-13
1wha_A	105	KIAA0147 protein, scribble; PDZ domain, cellular s	5e-09
2iwn_A	97	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	9e-13
2iwn_A	97	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	2e-09
2g5m_B	113	Neurabin-2; spinophilin, PDZ domain, CNS, synaptic	9e-13
2g5m_B	113	Neurabin-2; spinophilin, PDZ domain, CNS, synaptic	1e-09
2jil_A	97	GRIP1 protein, glutamate receptor interacting prot	9e-13
2jil_A	97	GRIP1 protein, glutamate receptor interacting prot	5e-10
2iwq_A	123	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	1e-12
2iwq_A	123	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	2e-09
2fcf_A	103	Multiple PDZ domain protein; adaptor molecule, pro	1e-12
2fcf_A	103	Multiple PDZ domain protein; adaptor molecule, pro	3e-09
2vwr_A	95	Ligand of NUMB protein X 2; protein-binding, metal	1e-12
2vwr_A	95	Ligand of NUMB protein X 2; protein-binding, metal	5e-12
2vwr_A	95	Ligand of NUMB protein X 2; protein-binding, metal	1e-05
1i16_A	130	Interleukin 16, LCF; cytokine, lymphocyte chemoatt	1e-12
1i16_A	130	Interleukin 16, LCF; cytokine, lymphocyte chemoatt	4e-10
2dkr_A	93	LIN-7 homolog B; LIN-7B, PDZ, structural genomics,	1e-12
2dkr_A	93	LIN-7 homolog B; LIN-7B, PDZ, structural genomics,	5e-10
2ehr_A	117	INAD-like protein; PDZ domain, inadl protein, hina	1e-12
2ehr_A	117	INAD-like protein; PDZ domain, inadl protein, hina	5e-09
2iwo_A	120	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	1e-12
2iwo_A	120	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	6e-10
2r4h_A	112	Membrane-associated guanylate kinase, WW and PDZ c	2e-12
2r4h_A	112	Membrane-associated guanylate kinase, WW and PDZ c	5e-09
2la8_A	106	Inactivation-NO-after-potential D protein, KON-TI	2e-12
2la8_A	106	Inactivation-NO-after-potential D protein, KON-TI	3e-12
2la8_A	106	Inactivation-NO-after-potential D protein, KON-TI	1e-06
2fne_A	117	Multiple PDZ domain protein; structural protein, s	2e-12
2fne_A	117	Multiple PDZ domain protein; structural protein, s	2e-10
2djt_A	104	Unnamed protein product; PDZ domain, structural ge	2e-12
2djt_A	104	Unnamed protein product; PDZ domain, structural ge	9e-09
3e17_A	88	Tight junction protein ZO-2; domain swapping, alte	2e-12
3e17_A	88	Tight junction protein ZO-2; domain swapping, alte	1e-09
3i4w_A	104	Disks large homolog 4; alpha and beta protein, alt	2e-12
3i4w_A	104	Disks large homolog 4; alpha and beta protein, alt	4e-10
2qg1_A	92	Multiple PDZ domain protein; MPDZ, MUPP1, structur	3e-12
2qg1_A	92	Multiple PDZ domain protein; MPDZ, MUPP1, structur	9e-12
2qg1_A	92	Multiple PDZ domain protein; MPDZ, MUPP1, structur	4e-07
1wfg_A	131	Regulating synaptic membrane exocytosis protein 2;	3e-12
1wfg_A	131	Regulating synaptic membrane exocytosis protein 2;	2e-11
2dmz_A	129	INAD-like protein; PDZ domain, inadl protein, hina	3e-12
2dmz_A	129	INAD-like protein; PDZ domain, inadl protein, hina	2e-09
2dmz_A	129	INAD-like protein; PDZ domain, inadl protein, hina	9e-04
1b8q_A	127	Protein (neuronal nitric oxide synthase); PDZ doma	3e-12
1b8q_A	127	Protein (neuronal nitric oxide synthase); PDZ doma	2e-10
1b8q_A	127	Protein (neuronal nitric oxide synthase); PDZ doma	5e-06
2q9v_A	90	Membrane-associated guanylate kinase, WW and PDZ c	3e-12
2q9v_A	90	Membrane-associated guanylate kinase, WW and PDZ c	2e-11
1qau_A	112	Neuronal nitric oxide synthase (residues 1-130); b	5e-12
1qau_A	112	Neuronal nitric oxide synthase (residues 1-130); b	3e-10
1qau_A	112	Neuronal nitric oxide synthase (residues 1-130); b	6e-06
1ihj_A	98	INAD; intermolecular disulfide bond, PDZ domain, s	7e-12
1ihj_A	98	INAD; intermolecular disulfide bond, PDZ domain, s	2e-09
1qav_A	90	Alpha-1 syntrophin (residues 77-171); beta-finger,	8e-12
1qav_A	90	Alpha-1 syntrophin (residues 77-171); beta-finger,	2e-08
1z87_A	263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	9e-12
1z87_A	263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	7e-08
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	1e-11
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	2e-08
3tsv_A	124	Tight junction protein ZO-1; PDZ, scaffolding, JAM	1e-11
3tsv_A	124	Tight junction protein ZO-1; PDZ, scaffolding, JAM	2e-07
1uep_A	103	Membrane associated guanylate kinase inverted-2 (M	1e-11
1uep_A	103	Membrane associated guanylate kinase inverted-2 (M	4e-11
2i04_A	85	Membrane-associated guanylate kinase, WW and PDZ d	1e-11
2i04_A	85	Membrane-associated guanylate kinase, WW and PDZ d	2e-10
2dc2_A	103	GOPC, golgi associated PDZ and coiled-coil motif c	1e-11
2dc2_A	103	GOPC, golgi associated PDZ and coiled-coil motif c	5e-09
2o2t_A	117	Multiple PDZ domain protein; structural protein, s	1e-11
2o2t_A	117	Multiple PDZ domain protein; structural protein, s	2e-08
2lob_A	112	Golgi-associated PDZ and coiled-coil motif-contai	1e-11
2lob_A	112	Golgi-associated PDZ and coiled-coil motif-contai	2e-09
2db5_A	128	INAD-like protein; PDZ domain, hinadl, PALS1- asso	2e-11
2db5_A	128	INAD-like protein; PDZ domain, hinadl, PALS1- asso	4e-09
1wh1_A	124	KIAA1095 protein; PDZ domain, structural genomics,	2e-11
1wh1_A	124	KIAA1095 protein; PDZ domain, structural genomics,	8e-08
2gzv_A	114	PRKCA-binding protein; protein kinase C, PDZ domai	3e-11
2gzv_A	114	PRKCA-binding protein; protein kinase C, PDZ domai	3e-09
1ujd_A	117	KIAA0559 protein; PDZ domain, structural genomics,	4e-11
1ujd_A	117	KIAA0559 protein; PDZ domain, structural genomics,	4e-11
1x5n_A	114	Harmonin; PDZ domain, usher syndrome 1C protein, a	4e-11
1x5n_A	114	Harmonin; PDZ domain, usher syndrome 1C protein, a	6e-06
1n7e_A	97	AMPA receptor interacting protein GRIP; PDZ, prote	5e-11
1n7e_A	97	AMPA receptor interacting protein GRIP; PDZ, prote	1e-09
1ufx_A	103	KIAA1526 protein; PDZ domain, structural genomics,	6e-11
1ufx_A	103	KIAA1526 protein; PDZ domain, structural genomics,	4e-09
2d92_A	108	INAD-like protein; PDZ domain, inadl protein, hina	6e-11
2d92_A	108	INAD-like protein; PDZ domain, inadl protein, hina	2e-10
1wi2_A	104	Riken cDNA 2700099C19; structural genomics, riken	7e-11
1wi2_A	104	Riken cDNA 2700099C19; structural genomics, riken	4e-06
3hpk_A	125	Protein interacting with PRKCA 1; oxidized, PDZ do	7e-11
3hpk_A	125	Protein interacting with PRKCA 1; oxidized, PDZ do	1e-09
1v62_A	117	KIAA1719 protein; structural genomics, synaptic tr	8e-11
1v62_A	117	KIAA1719 protein; structural genomics, synaptic tr	6e-10
1uit_A	117	Human discs large 5 protein; PDZ domain, HDLG5, ma	9e-11
1uit_A	117	Human discs large 5 protein; PDZ domain, HDLG5, ma	5e-07
1uez_A	101	KIAA1526 protein; PDZ domain, structural genomics,	1e-10
1uez_A	101	KIAA1526 protein; PDZ domain, structural genomics,	1e-05
2csj_A	117	TJP2 protein; PDZ domain, structural genomics, NPP	2e-10
2csj_A	117	TJP2 protein; PDZ domain, structural genomics, NPP	2e-06
1wif_A	126	RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, s	2e-10
1wif_A	126	RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, s	7e-10
2h2b_A	107	Tight junction protein ZO-1; PDZ domain, phage der	2e-10
2h2b_A	107	Tight junction protein ZO-1; PDZ domain, phage der	3e-06
1uf1_A	128	KIAA1526 protein; PDZ domain, structural genomics,	2e-10
1uf1_A	128	KIAA1526 protein; PDZ domain, structural genomics,	1e-05
1x5q_A	110	LAP4 protein; PDZ domain, scribble homolog protein	2e-10
1x5q_A	110	LAP4 protein; PDZ domain, scribble homolog protein	1e-06
2w4f_A	97	Protein LAP4; structural protein, phosphoprotein,	3e-10
2w4f_A	97	Protein LAP4; structural protein, phosphoprotein,	3e-06
1nf3_C	128	PAR-6B; semi-CRIB motif, switch I and II, PDZ doma	3e-10
1nf3_C	128	PAR-6B; semi-CRIB motif, switch I and II, PDZ doma	1e-09
2yt7_A	101	Amyloid beta A4 precursor protein-binding family A	3e-10
2yt7_A	101	Amyloid beta A4 precursor protein-binding family A	1e-09
2eeh_A	100	PDZ domain-containing protein 7; structural genomi	5e-10
2eeh_A	100	PDZ domain-containing protein 7; structural genomi	4e-06
1uew_A	114	Membrane associated guanylate kinase inverted-2 (M	5e-10
1uew_A	114	Membrane associated guanylate kinase inverted-2 (M	5e-08
1mfg_A	95	ERB-B2 interacting protein; PDZ domain, protein-pe	6e-10
1mfg_A	95	ERB-B2 interacting protein; PDZ domain, protein-pe	2e-05
1n7t_A	103	99-MER peptide of densin-180-like protein; PDZ dom	6e-10
1n7t_A	103	99-MER peptide of densin-180-like protein; PDZ dom	2e-05
1va8_A	113	Maguk P55 subfamily member 5; PDZ domain, palmitoy	6e-10
1va8_A	113	Maguk P55 subfamily member 5; PDZ domain, palmitoy	6e-09
3k1r_A	192	Harmonin; protein-protein complex, alternative spl	8e-10
3k1r_A	192	Harmonin; protein-protein complex, alternative spl	3e-06
2vz5_A	139	TAX1-binding protein 3; WNT signaling pathway, pro	1e-09
2vz5_A	139	TAX1-binding protein 3; WNT signaling pathway, pro	4e-05
1v5q_A	122	GRIP1 homolog, glutamate receptor interacting prot	3e-09
1v5q_A	122	GRIP1 homolog, glutamate receptor interacting prot	3e-07
3nfk_A	107	Tyrosine-protein phosphatase non-receptor type 4;	9e-09
3nfk_A	107	Tyrosine-protein phosphatase non-receptor type 4;	3e-07
2ejy_A	97	55 kDa erythrocyte membrane protein; GPC, maguk, P	1e-08
2ejy_A	97	55 kDa erythrocyte membrane protein; GPC, maguk, P	7e-08
3gge_A	95	PDZ domain-containing protein GIPC2; structural ge	2e-08
3gge_A	95	PDZ domain-containing protein GIPC2; structural ge	3e-08
1m5z_A	91	GRIP, AMPA receptor interacting protein; six beta-	2e-08
1m5z_A	91	GRIP, AMPA receptor interacting protein; six beta-	5e-06
2eaq_A	90	LIM domain only protein 7; conserved hypothetical	2e-08
2eaq_A	90	LIM domain only protein 7; conserved hypothetical	2e-06
1kwa_A	88	Hcask/LIN-2 protein; PDZ domain, neurexin, syndeca	2e-08
1kwa_A	88	Hcask/LIN-2 protein; PDZ domain, neurexin, syndeca	6e-08
2edv_A	96	FERM and PDZ domain-containing protein 1; cytoskel	4e-08
2edv_A	96	FERM and PDZ domain-containing protein 1; cytoskel	4e-07
2cs5_A	119	Tyrosine-protein phosphatase, non-receptor type 4;	4e-08
2cs5_A	119	Tyrosine-protein phosphatase, non-receptor type 4;	3e-07
3o46_A	93	Maguk P55 subfamily member 7; PDZ domain, structur	4e-08
3o46_A	93	Maguk P55 subfamily member 7; PDZ domain, structur	9e-08
1rgw_A	85	ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK,	8e-08
1rgw_A	85	ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK,	6e-05
2uzc_A	88	Human pdlim5, PDZ and LIM domain 5; metal-binding,	9e-08
2uzc_A	88	Human pdlim5, PDZ and LIM domain 5; metal-binding,	2e-05
2pa1_A	87	PDZ and LIM domain protein 2; PDZ domain, structur	2e-07
2pa1_A	87	PDZ and LIM domain protein 2; PDZ domain, structur	5e-05
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	2e-07
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	7e-06
1wf7_A	103	Enigma homologue protein; PDZ domain, structural g	2e-07
1wf7_A	103	Enigma homologue protein; PDZ domain, structural g	5e-05
2q3g_A	89	PDZ and LIM domain protein 7; structural genomics,	3e-07
2q3g_A	89	PDZ and LIM domain protein 7; structural genomics,	5e-05
3qe1_A	107	Sorting nexin-27, G protein-activated inward RECT	3e-07
3qe1_A	107	Sorting nexin-27, G protein-activated inward RECT	3e-06
2edp_A	100	Fragment, shroom family member 4; APX/shroom famil	3e-07
2edp_A	100	Fragment, shroom family member 4; APX/shroom famil	6e-06
1vae_A	111	Rhophilin 2, rhophilin, RHO GTPase binding protein	3e-07
1vae_A	111	Rhophilin 2, rhophilin, RHO GTPase binding protein	2e-06
2krg_A	216	Na(+)/H(+) exchange regulatory cofactor NHE-RF1; a	4e-07
2krg_A	216	Na(+)/H(+) exchange regulatory cofactor NHE-RF1; a	8e-05
1v5l_A	103	PDZ and LIM domain 3; actinin alpha 2 associated L	6e-07
1v5l_A	103	PDZ and LIM domain 3; actinin alpha 2 associated L	4e-05
2eeg_A	94	PDZ and LIM domain protein 4; PDZ domain, structur	6e-07
2eeg_A	94	PDZ and LIM domain protein 4; PDZ domain, structur	2e-05
2kjd_A	128	Sodium/hydrogen exchange regulatory cofactor NHE-	6e-07
2kjd_A	128	Sodium/hydrogen exchange regulatory cofactor NHE-	5e-05
2vsv_A	109	Rhophilin-2; scaffold protein, RHO GTPase binding,	6e-07
2vsv_A	109	Rhophilin-2; scaffold protein, RHO GTPase binding,	7e-07
2jxo_A	98	Ezrin-radixin-moesin-binding phosphoprotein 50; nh	1e-06
2jxo_A	98	Ezrin-radixin-moesin-binding phosphoprotein 50; nh	8e-05
3bpu_A	88	Membrane-associated guanylate kinase, WW and PDZ c	1e-06
3bpu_A	88	Membrane-associated guanylate kinase, WW and PDZ c	3e-06
2pkt_A	91	PDZ and LIM domain protein 1; PDZ domain, structur	1e-06
2pkt_A	91	PDZ and LIM domain protein 1; PDZ domain, structur	7e-05
1vb7_A	94	PDZ and LIM domain 2; PDZ domain PDZ-LIM protein,	1e-06
1vb7_A	94	PDZ and LIM domain 2; PDZ domain PDZ-LIM protein,	5e-05
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	2e-06
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	1e-05
2eei_A	106	PDZ domain-containing protein 1; regulatory factor	2e-06
2eei_A	106	PDZ domain-containing protein 1; regulatory factor	5e-06
1g9o_A	91	NHE-RF; PDZ domain, complex, signaling protein; 1.	2e-06
1g9o_A	91	NHE-RF; PDZ domain, complex, signaling protein; 1.	7e-06
2e7k_A	91	Maguk P55 subfamily member 2; PDZ domain, MPP2 pro	2e-06
2e7k_A	91	Maguk P55 subfamily member 2; PDZ domain, MPP2 pro	2e-05
2he4_A	90	Na(+)/H(+) exchange regulatory cofactor NHE-RF2; p	3e-06
2he4_A	90	Na(+)/H(+) exchange regulatory cofactor NHE-RF2; p	2e-05
2f5y_A	91	Regulator of G-protein signalling 3 isoform 1; PDZ	5e-06
2f5y_A	91	Regulator of G-protein signalling 3 isoform 1; PDZ	7e-06
2qbw_A	195	PDZ-fibronectin fusion protein; fibronectin PDZ, u	5e-06
2kv8_A	83	RGS12, regulator of G-protein signaling 12; PDZ do	5e-06
2kv8_A	83	RGS12, regulator of G-protein signaling 12; PDZ do	1e-05
2dls_A	93	PDZ-rhogef, RHO guanine nucleotide exchange factor	7e-06
2dls_A	93	PDZ-rhogef, RHO guanine nucleotide exchange factor	8e-06
1whd_A	100	RGS3, regulator of G-protein signaling 3; PDZ doma	1e-05
1whd_A	100	RGS3, regulator of G-protein signaling 3; PDZ doma	2e-05
2d90_A	102	PDZ domain containing protein 1; structural genomi	1e-05
2d90_A	102	PDZ domain containing protein 1; structural genomi	1e-04
1ujv_A	96	Membrane associated guanylate kinase inverted-2 (M	1e-05
1ujv_A	96	Membrane associated guanylate kinase inverted-2 (M	1e-04
1r6j_A	82	Syntenin 1; PDZ, membrane protein; 0.73A {Homo sap	2e-05
2vsp_A	91	PDZ domain-containing protein 1; membrane, cytopla	2e-05
2vsp_A	91	PDZ domain-containing protein 1; membrane, cytopla	4e-05
2v90_A	96	PDZ domain-containing protein 3; membrane, protein	3e-05
2v90_A	96	PDZ domain-containing protein 3; membrane, protein	4e-05
3khf_A	99	Microtubule-associated serine/threonine-protein ki	3e-05
3khf_A	99	Microtubule-associated serine/threonine-protein ki	1e-04
3r68_A	95	Na(+)/H(+) exchange regulatory cofactor NHE-RF3; P	3e-05
3r68_A	95	Na(+)/H(+) exchange regulatory cofactor NHE-RF3; P	1e-04
3soe_A	113	Membrane-associated guanylate kinase, WW and PDZ c	5e-05
3soe_A	113	Membrane-associated guanylate kinase, WW and PDZ c	2e-04
2yuy_A	126	RHO GTPase activating protein 21; PDZ domain, stru	7e-05
2yuy_A	126	RHO GTPase activating protein 21; PDZ domain, stru	1e-04
3ngh_A	106	PDZ domain-containing protein 1; adaptor protein,	9e-05
3ngh_A	106	PDZ domain-containing protein 1; adaptor protein,	7e-04
2d8i_A	114	T-cell lymphoma invasion and metastasis 1 variant;	1e-04
2d8i_A	114	T-cell lymphoma invasion and metastasis 1 variant;	6e-04
2edz_A	114	PDZ domain-containing protein 1; CFTR-associated p	1e-04
2edz_A	114	PDZ domain-containing protein 1; CFTR-associated p	4e-04
1y7n_A	90	Amyloid beta A4 precursor protein-binding family A	1e-04
3kzd_A	94	TIAM-1, T-lymphoma invasion and metastasis-inducin	1e-04
2z17_A	104	Pleckstrin homology SEC7 and coiled-coil domains-	2e-04
1q3o_A	109	Shank1; PDZ, GKAP, peptide binding protein; 1.80A	2e-04
2ego_A	96	General receptor for phosphoinositides 1- associat	2e-04
2ego_A	96	General receptor for phosphoinositides 1- associat	6e-04
3l4f_D	132	SH3 and multiple ankyrin repeat domains protein 1;	3e-04

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A Length = 196

 Score = 83.3 bits (206), Expect = 1e-20
 Identities = 35/137 (25%), Positives = 48/137 (35%), Gaps = 48/137 (35%)

Query: 4   VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK--------------------- 42
           +PGG AA DGRL   D I+ V+  DVR+ +       +K                     
Sbjct: 43  IPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVM 102

Query: 43  ---------------------------GGILVHDIYPEGAAAKDARLKFGDQILELTGED 75
                                        I V  I   GAA KD RL+ GD+IL +    
Sbjct: 103 EIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVG 162

Query: 76  FRNITHAKAMAHLRLTP 92
             ++ H  A+A L+ T 
Sbjct: 163 LEDVMHEDAVAALKNTY 179

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A Length = 196

 Score = 68.2 bits (167), Expect = 7e-15
 Identities = 31/139 (22%), Positives = 49/139 (35%), Gaps = 39/139 (28%)

Query: 42  KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKPCPTV 101
              I +  I P GAAA+D RL+  D IL +   D R +TH+ A+  L+   +        
Sbjct: 34  DPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGS-------- 85

Query: 102 PSEPNANATTGEKTTFYFHFQVKLVVLRDTVTKEDDLLEFVDVELTKKAGKGFGLSLVGR 161
                                V+L V+R          E V      K  KG G S+ G 
Sbjct: 86  --------------------IVRLYVMRRKPPA-----EKVMEIKLIKGPKGLGFSIAGG 120

Query: 162 KQGP------GVFISDLVS 174
                      ++++ ++ 
Sbjct: 121 VGNQHIPGDNSIYVTKIIE 139

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster} Length = 206

 Score = 78.4 bits (193), Expect = 1e-18
 Identities = 26/151 (17%), Positives = 43/151 (28%), Gaps = 49/151 (32%)

Query: 4   VPGGIAATDGRLLKGDQIMSVDGTDVRDKS--QEEVATIMK------------------- 42
            P G  A D RL   D I  ++GT +   S    +V  +                     
Sbjct: 53  YPEGQVAADKRLKIFDHICDINGTPIHVGSMTTLKVHQLFHTTYEKAVTLTVFRADPPEL 112

Query: 43  -----------------------GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNI 79
                                   G  + D+        D++L+ GD I +  G+    +
Sbjct: 113 EKFNVDLMKKAGKELGLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGL 172

Query: 80  THAKAMAHLRLTPAK-----AKPCPTVPSEP 105
                 A  +    K      +P PT+ +E 
Sbjct: 173 PFQVCYALFKGANGKVSMEVTRPKPTLRTEA 203

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster} Length = 206

 Score = 70.7 bits (173), Expect = 9e-16
 Identities = 36/137 (26%), Positives = 51/137 (37%), Gaps = 35/137 (25%)

Query: 39  TIMKGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFR--NITHAKAMAHLRLTPAKAK 96
             +  G ++  +YPEG  A D RLK  D I ++ G      ++T  K       T  KA 
Sbjct: 41  NHVTTGCVITHVYPEGQVAADKRLKIFDHICDINGTPIHVGSMTTLKVHQLFHTTYEKAV 100

Query: 97  PCPTVPSEPNANATTGEKTTFYFHFQVKLVVLRDTVTKEDDLLEFVDVELTKKAGKGFGL 156
                                       L V R    + +      +V+L KKAGK  GL
Sbjct: 101 ---------------------------TLTVFRADPPELE----KFNVDLMKKAGKELGL 129

Query: 157 SLVGRKQGPGVFISDLV 173
           SL   +   G  I+DL+
Sbjct: 130 SLSPNE--IGCTIADLI 144

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A Length = 196

 Score = 77.9 bits (192), Expect = 1e-18
 Identities = 19/141 (13%), Positives = 40/141 (28%), Gaps = 52/141 (36%)

Query: 4   VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG-------------------- 43
                A   G L  GD++M+++G    D + EE   +++                     
Sbjct: 44  EADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAESVI 103

Query: 44  --------------------------------GILVHDIYPEGAAAKDARLKFGDQILEL 71
                                            +++ DI     A +   L+ GD++L +
Sbjct: 104 PSSGTFHVKLPKKHSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAI 163

Query: 72  TGEDFRNITHAKAMAHLRLTP 92
                 + +   A+  L+   
Sbjct: 164 DNIRLDSCSMEDAVQILQQCE 184

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A Length = 196

 Score = 76.7 bits (189), Expect = 3e-18
 Identities = 25/134 (18%), Positives = 45/134 (33%), Gaps = 29/134 (21%)

Query: 43  GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKPCPTVP 102
              L+  I  +  A +   L+ GD+++ + G    + T  +A   LR +   +       
Sbjct: 36  SPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITS------- 88

Query: 103 SEPNANATTGEKTTFYFHFQVKLVVLRDTVTKEDDLLEFVDVELTKKAGKGFGLSLVG-- 160
                              +V L +  D             V+L KK     G+++    
Sbjct: 89  -------------------KVTLEIEFDVAESVIPSSGTFHVKLPKKHSVELGITISSPS 129

Query: 161 -RKQGPGVFISDLV 173
            RK G  + ISD+ 
Sbjct: 130 SRKPGDPLVISDIK 143

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Length = 721

 Score = 79.2 bits (194), Expect = 8e-18
 Identities = 53/244 (21%), Positives = 84/244 (34%), Gaps = 75/244 (30%)

Query: 4   VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK--------------------- 42
           +PGG AA DGRL   D I+ V+  DVR+ +       +K                     
Sbjct: 97  IPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVM 156

Query: 43  ---------------------------GGILVHDIYPEGAAAKDARLKFGDQILELTGED 75
                                        I V  I   GAA KD RL+ GD+IL +    
Sbjct: 157 EIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVG 216

Query: 76  FRNITHAKAMAHLR-----LTPAKAKPC----------PTVPSEPNANATTGEKTTFYFH 120
             ++ H  A+A L+     +    AKP           P + +  + +       + Y  
Sbjct: 217 LEDVMHEDAVAALKNTYDVVYLKVAKPSNAYLSDSYAPPDITTSYSQHLDNEISHSSYLG 276

Query: 121 FQVKLV-----------VLRDTVTKEDDLLEFVDVELTKKAGKGFGLSLVGRKQGPGVFI 169
                            V +D + +ED   E   + + +    G G ++VG + G G+FI
Sbjct: 277 TDYPTAMTPTSPRRYSPVAKDLLGEEDIPREPRRIVIHRG-STGLGFNIVGGEDGEGIFI 335

Query: 170 SDLV 173
           S ++
Sbjct: 336 SFIL 339

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Length = 721

 Score = 61.5 bits (148), Expect = 1e-11
 Identities = 22/102 (21%), Positives = 35/102 (34%)

Query: 42  KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKPCPTV 101
              I +  I P GAAA+D RL+  D IL +   D R +TH+ A+  L+   +  +     
Sbjct: 88  DPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMR 147

Query: 102 PSEPNANATTGEKTTFYFHFQVKLVVLRDTVTKEDDLLEFVD 143
              P       +           +           D   +V 
Sbjct: 148 RKPPAEKVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVT 189

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Length = 721

 Score = 54.5 bits (130), Expect = 2e-09
 Identities = 18/48 (37%), Positives = 24/48 (50%)

Query: 42  KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
             GI +  I   G A     L+ GDQIL + G D RN +H +A   L+
Sbjct: 330 GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALK 377

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Length = 721

 Score = 48.0 bits (113), Expect = 4e-07
 Identities = 19/42 (45%), Positives = 26/42 (61%)

Query: 2   RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
             + GG A   G L KGDQI+SV+G D+R+ S E+ A  +K 
Sbjct: 337 FILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKN 378

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A Length = 388

 Score = 72.3 bits (176), Expect = 1e-15
 Identities = 26/125 (20%), Positives = 44/125 (35%), Gaps = 37/125 (29%)

Query: 4   VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG-------------------- 43
           + GG AA  G+L  GDQIMS++GT +          I+KG                    
Sbjct: 240 MNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGLKNQTQVKLNIVSCPPVTTV 299

Query: 44  ----------------GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAH 87
                             ++  +   G A +   ++ G +I+E+ G+      H K +  
Sbjct: 300 LIKRPDLKYQLGFSVQNGIICSLMRGGIAERG-GVRVGHRIIEINGQSVVATAHEKIVQA 358

Query: 88  LRLTP 92
           L  + 
Sbjct: 359 LSNSV 363

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A Length = 388

 Score = 57.7 bits (138), Expect = 2e-10
 Identities = 10/61 (16%), Positives = 26/61 (42%)

Query: 41  MKGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKPCPT 100
           +   +++ ++   G AA+  +L  GDQI+ + G     +  A     ++    + +    
Sbjct: 230 ILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGLKNQTQVKLN 289

Query: 101 V 101
           +
Sbjct: 290 I 290

>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens} Length = 98

 Score = 65.0 bits (159), Expect = 1e-14
 Identities = 28/52 (53%), Positives = 36/52 (69%)

Query: 43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK 94
          G I++H++Y EGAA KD RL  GDQILE+ G D R  TH +A+  LR TP +
Sbjct: 30 GAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQTPQR 81

>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens} Length = 98

 Score = 53.1 bits (128), Expect = 4e-10
 Identities = 15/39 (38%), Positives = 23/39 (58%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
             G A  DGRL  GDQI+ V+G D+R  + +E   +++
Sbjct: 38 YEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLR 76

>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 116

 Score = 65.5 bits (160), Expect = 1e-14
 Identities = 28/52 (53%), Positives = 37/52 (71%)

Query: 43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK 94
            I++H++Y EGAAA+D RL  GDQILE+ G D RN +H +A+  LR TP K
Sbjct: 43 NAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEAITALRQTPQK 94

>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 116

 Score = 53.9 bits (130), Expect = 3e-10
 Identities = 19/41 (46%), Positives = 25/41 (60%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
             G AA DGRL  GDQI+ V+G D+R+ S EE  T ++  
Sbjct: 51 YEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEAITALRQT 91

>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A Length = 129

 Score = 64.8 bits (158), Expect = 3e-14
 Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 9/78 (11%)

Query: 43  GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTP---------A 93
             + +  +  +G AA D +++ GD I+ +        THA+ +   +  P          
Sbjct: 43  EFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELC 102

Query: 94  KAKPCPTVPSEPNANATT 111
           +  P P  P +PN +  T
Sbjct: 103 RGYPLPFDPDDPNTSLVT 120

>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A Length = 129

 Score = 53.6 bits (129), Expect = 6e-10
 Identities = 15/40 (37%), Positives = 22/40 (55%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
          V  G AA DG++  GD I+SV+ T V   +  +V  I + 
Sbjct: 51 VLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQS 90

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus} Length = 200

 Score = 66.3 bits (162), Expect = 3e-14
 Identities = 26/141 (18%), Positives = 43/141 (30%), Gaps = 38/141 (26%)

Query: 42  KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKPCPTV 101
            G   V ++   G AA+  +L  GD I  + G +     H + ++ L+            
Sbjct: 32  DGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKFRHDEIISLLKNVGE-------- 83

Query: 102 PSEPNANATTGEKTTFYFHFQVKLVVLRDTVTKEDDLLE----FVDVELTKKAGKGFGLS 157
                               +V L V  +               V+V L  K G  FG  
Sbjct: 84  --------------------RVVLEVEYELPPVSIQGSSVMFRTVEVTL-HKEGNTFGFV 122

Query: 158 LVG-----RKQGPGVFISDLV 173
           + G     R +   V I+ + 
Sbjct: 123 IRGGAHDDRNKSRPVVITCVR 143

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus} Length = 200

 Score = 53.2 bits (128), Expect = 2e-09
 Identities = 14/49 (28%), Positives = 27/49 (55%)

Query: 44  GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTP 92
            +++  + P G A ++  +K GD++L + G      THA+AM+ L+   
Sbjct: 136 PVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCG 184

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus} Length = 200

 Score = 53.2 bits (128), Expect = 2e-09
 Identities = 13/39 (33%), Positives = 23/39 (58%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
            GGIAA   +L  GD I +V+G ++     +E+ +++K
Sbjct: 41 RQGGIAARSDQLDVGDYIKAVNGINLAKFRHDEIISLLK 79

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus} Length = 200

 Score = 50.5 bits (121), Expect = 2e-08
 Identities = 14/40 (35%), Positives = 23/40 (57%)

Query: 4   VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
            PGG A  +G +  GD+++SVDG  +   +  E  +I+K 
Sbjct: 143 RPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQ 182

>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2 Length = 119

 Score = 64.4 bits (157), Expect = 4e-14
 Identities = 17/79 (21%), Positives = 37/79 (46%), Gaps = 8/79 (10%)

Query: 42  KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK----- 96
              I VH ++P G A+++  ++ G+++L + G+  +  TH  A+A LR      +     
Sbjct: 41  NKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAREPRQAVIVT 100

Query: 97  ---PCPTVPSEPNANATTG 112
                  +P   ++  ++G
Sbjct: 101 RKLTPEAMPDLNSSGPSSG 119

>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2 Length = 119

 Score = 54.4 bits (131), Expect = 2e-10
 Identities = 9/40 (22%), Positives = 25/40 (62%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
           P G+A+ +G + KG++++S++G  ++  +  +   I++ 
Sbjct: 50 FPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQ 89

>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A Length = 108

 Score = 63.6 bits (155), Expect = 6e-14
 Identities = 19/56 (33%), Positives = 30/56 (53%)

Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKP 97
           GGI +  I   GA A D R++ GD +L++   +F N+++  A+  LR    K  P
Sbjct: 32 DGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLRDIVHKPGP 87

>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A Length = 108

 Score = 52.0 bits (125), Expect = 1e-09
 Identities = 10/39 (25%), Positives = 22/39 (56%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
          + GG  A DGR+  GD ++ V+  +  + S ++   +++
Sbjct: 41 MKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLR 79

>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 124

 Score = 63.6 bits (155), Expect = 8e-14
 Identities = 20/55 (36%), Positives = 31/55 (56%)

Query: 42  KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK 96
           +  I V  I PEG AA D R++ GD++LE+  +     +H  A A ++  P+K K
Sbjct: 50  RMSIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNASAIIKTAPSKVK 104

>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 124

 Score = 52.8 bits (127), Expect = 1e-09
 Identities = 12/41 (29%), Positives = 23/41 (56%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
           P G AA DGR+  GD+++ ++   +  +S +  + I+K  
Sbjct: 59 NPEGPAAADGRMRIGDELLEINNQILYGRSHQNASAIIKTA 99

>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 123

 Score = 63.6 bits (155), Expect = 9e-14
 Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 9/78 (11%)

Query: 43  GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTP---------A 93
             + V  + P+G AA+D +++ GD I+ +        THA  +   +  P          
Sbjct: 44  EFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVPIGQSVNLVLC 103

Query: 94  KAKPCPTVPSEPNANATT 111
           +  P P  P +P  +  +
Sbjct: 104 RGYPLPFDPEDPANSGPS 121

>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 123

 Score = 53.6 bits (129), Expect = 5e-10
 Identities = 11/40 (27%), Positives = 21/40 (52%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
          +P G AA DG++  GD I+ ++   V   +  +V  + + 
Sbjct: 52 IPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQS 91

>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A Length = 127

 Score = 63.7 bits (155), Expect = 9e-14
 Identities = 18/57 (31%), Positives = 28/57 (49%)

Query: 43  GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKPCP 99
            GI +  I   GAA KD RL+  DQ++ + GE     ++ +AM  LR + +      
Sbjct: 55  LGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIR 111

>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A Length = 127

 Score = 52.5 bits (126), Expect = 1e-09
 Identities = 14/39 (35%), Positives = 22/39 (56%)

Query: 4   VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
           + GG A  DGRL   DQ+++V+G  +  KS  E    ++
Sbjct: 63  IHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLR 101

>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 107

 Score = 63.1 bits (154), Expect = 1e-13
 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 5/67 (7%)

Query: 42  KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK-----AK 96
           K GI V  +   GAA +D R++  DQI+E+ G     +T   A   LR T         +
Sbjct: 39  KLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRFVIGR 98

Query: 97  PCPTVPS 103
             P+ PS
Sbjct: 99  EKPSGPS 105

>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 107

 Score = 52.7 bits (127), Expect = 7e-10
 Identities = 15/41 (36%), Positives = 22/41 (53%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
            GG A  DGR+   DQI+ VDG  +   +Q   AT+++  
Sbjct: 48 TEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNT 88

>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 108

 Score = 62.7 bits (153), Expect = 1e-13
 Identities = 20/55 (36%), Positives = 28/55 (50%)

Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK 96
           GGI V  + P+GAA  D R+  GD++L + G      TH +A+  LR T     
Sbjct: 41 HGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVH 95

>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 108

 Score = 52.3 bits (126), Expect = 9e-10
 Identities = 11/41 (26%), Positives = 25/41 (60%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
          +P G A +DGR+ KGD++++V+G  +   + ++    ++  
Sbjct: 50 IPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNT 90

>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 111

 Score = 62.8 bits (153), Expect = 1e-13
 Identities = 17/63 (26%), Positives = 28/63 (44%)

Query: 30 RDKSQEEVATIMKGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
                        GI +  + P GAA +D RL+ G ++LE+  +    +TH +A+  LR
Sbjct: 31 ARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLR 90

Query: 90 LTP 92
             
Sbjct: 91 SVG 93

>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 111

 Score = 51.6 bits (124), Expect = 2e-09
 Identities = 10/39 (25%), Positives = 19/39 (48%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
           P G A  DGRL  G +++ V+   +   +  E   +++
Sbjct: 52 SPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLR 90

>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 110

 Score = 62.7 bits (153), Expect = 1e-13
 Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 5/76 (6%)

Query: 42  KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK-----AK 96
             G+ +  + P   AA D RL  GD+ILE+ G     + + +A+  +R    K     AK
Sbjct: 35  APGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHGGKKMRFLVAK 94

Query: 97  PCPTVPSEPNANATTG 112
                  + ++  ++G
Sbjct: 95  SDVETAKKIHSGPSSG 110

>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 110

 Score = 53.9 bits (130), Expect = 3e-10
 Identities = 14/41 (34%), Positives = 23/41 (56%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
          +PG  AA DGRL  GD+I+ V+G+ +          +++ G
Sbjct: 44 LPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHG 84

>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1 Length = 118

 Score = 62.9 bits (153), Expect = 2e-13
 Identities = 15/53 (28%), Positives = 28/53 (52%)

Query: 43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKA 95
          G ++V  +Y  GAA +   +  GD+I+ + G+   + T A+A A L+    + 
Sbjct: 43 GKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQG 95

>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1 Length = 118

 Score = 52.8 bits (127), Expect = 7e-10
 Identities = 13/39 (33%), Positives = 22/39 (56%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
            GG A   G ++KGD+IM+++G  V D +  E    ++
Sbjct: 51 YEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQ 89

>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A Length = 81

 Score = 61.5 bits (150), Expect = 2e-13
 Identities = 16/66 (24%), Positives = 31/66 (46%)

Query: 29 VRDKSQEEVATIMKGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHL 88
          V+ +  EE    +   I V +I  +  AA+D  ++ GD +L++ G    N++   A   +
Sbjct: 7  VKSRKNEEYGLRLASHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLI 66

Query: 89 RLTPAK 94
            +  K
Sbjct: 67 ERSKGK 72

>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A Length = 81

 Score = 52.3 bits (126), Expect = 6e-10
 Identities = 10/41 (24%), Positives = 22/41 (53%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
              +AA DG + +GD ++ ++GT   + S  +  T+++  
Sbjct: 29 SQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERS 69

>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A Length = 96

 Score = 61.8 bits (151), Expect = 2e-13
 Identities = 20/55 (36%), Positives = 28/55 (50%)

Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK 96
           GGI V  + P+GAA  D R+  GD++L + G      TH +A+  LR T     
Sbjct: 32 HGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVH 86

>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A Length = 96

 Score = 52.6 bits (127), Expect = 5e-10
 Identities = 11/41 (26%), Positives = 25/41 (60%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
          +P G A +DGR+ KGD++++V+G  +   + ++    ++  
Sbjct: 41 IPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNT 81

>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 120

 Score = 62.5 bits (152), Expect = 2e-13
 Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 4/73 (5%)

Query: 44  GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKA----KPCP 99
           GI V  I   GAAA D RL+ GD+IL + G+D +N+ H  A+   R          +   
Sbjct: 48  GIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQHRL 107

Query: 100 TVPSEPNANATTG 112
            V + P +  ++G
Sbjct: 108 QVQNGPISGPSSG 120

>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 120

 Score = 51.7 bits (124), Expect = 2e-09
 Identities = 14/41 (34%), Positives = 25/41 (60%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
             G AA DGRL +GD+I+SV+G D+++   ++   + +  
Sbjct: 55 KENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNA 95

>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 62.4 bits (152), Expect = 2e-13
 Identities = 19/53 (35%), Positives = 27/53 (50%)

Query: 44  GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK 96
            I V  I   GAA KD RL+ GD++L +       +TH +A+A L+ T     
Sbjct: 55  SIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVY 107

>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 53.9 bits (130), Expect = 3e-10
 Identities = 14/41 (34%), Positives = 23/41 (56%)

Query: 4   VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
           + GG A  DGRL  GD+++ V+   + + + EE   I+K  
Sbjct: 62  IDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNT 102

>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A Length = 106

 Score = 62.0 bits (151), Expect = 2e-13
 Identities = 17/51 (33%), Positives = 24/51 (47%)

Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTP 92
          K GI V  +   GAA  D RL  GDQ+L + G     ++  +A   +  T 
Sbjct: 37 KLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTS 87

>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A Length = 106

 Score = 55.8 bits (135), Expect = 5e-11
 Identities = 20/39 (51%), Positives = 24/39 (61%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
          V GG A  DGRL  GDQ++SVDG  +   SQE  A +M 
Sbjct: 46 VKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMT 84

>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 61.6 bits (150), Expect = 3e-13
 Identities = 16/53 (30%), Positives = 33/53 (62%)

Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK 96
           + V  +  +G A ++ R++ GDQI+E+ GE  R++THA+A+  ++    + +
Sbjct: 37 DLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSGGRRVR 89

>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 50.8 bits (122), Expect = 4e-09
 Identities = 13/41 (31%), Positives = 21/41 (51%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
             G A  +GR+  GDQI+ ++G   RD +      ++K G
Sbjct: 44 AEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSG 84

>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A Length = 111

 Score = 61.6 bits (150), Expect = 4e-13
 Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 8/74 (10%)

Query: 42  KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKA------ 95
              I V +I P GAA +D RLK GD+++E+ G D    +  + ++ LR T  +       
Sbjct: 38  SAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLRSTKMEGTVSLLV 97

Query: 96  --KPCPTVPSEPNA 107
             +     P E NA
Sbjct: 98  FRQEEAFHPREMNA 111

>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A Length = 111

 Score = 56.6 bits (137), Expect = 3e-11
 Identities = 18/39 (46%), Positives = 28/39 (71%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
          +P G A  DGRL  GD+++ V+G D+  KSQEEV ++++
Sbjct: 47 LPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLR 85

>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A Length = 102

 Score = 61.2 bits (149), Expect = 4e-13
 Identities = 17/55 (30%), Positives = 26/55 (47%)

Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK 96
            GI +  I P GAAA D RL   D +L +   D   + H++A+  L+      +
Sbjct: 33 DPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHSRAVEALKEAGPVVR 87

>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A Length = 102

 Score = 51.6 bits (124), Expect = 2e-09
 Identities = 14/41 (34%), Positives = 20/41 (48%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
          +PGG AA DGRL   D ++ V+  DV +         +K  
Sbjct: 42 IPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHSRAVEALKEA 82

>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A Length = 170

 Score = 63.0 bits (153), Expect = 4e-13
 Identities = 17/55 (30%), Positives = 29/55 (52%)

Query: 42  KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK 96
           K GI V  +   GAA +D R++  D ++E+ G     +T + A + LR T  + +
Sbjct: 110 KLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVR 164

>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A Length = 170

 Score = 53.4 bits (128), Expect = 1e-09
 Identities = 13/41 (31%), Positives = 22/41 (53%)

Query: 4   VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
             GG A  DGR+   D ++ VDGT +   +Q   A++++  
Sbjct: 119 TEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNT 159

>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A Length = 105

 Score = 61.2 bits (149), Expect = 4e-13
 Identities = 17/53 (32%), Positives = 26/53 (49%)

Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK 96
           I V  I   GAA KD +L+ GD++L +       +TH +A+  L+ T     
Sbjct: 34 SIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAVTALKNTSDFVY 86

>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A Length = 105

 Score = 51.2 bits (123), Expect = 3e-09
 Identities = 13/41 (31%), Positives = 24/41 (58%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
          + GG A  DG+L  GD++++V+   + + + EE  T +K  
Sbjct: 41 IEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAVTALKNT 81

>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A Length = 101

 Score = 61.2 bits (149), Expect = 4e-13
 Identities = 21/53 (39%), Positives = 28/53 (52%)

Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK 96
          GI V  I   GAAA D RL+ GD+IL + G+D +N+ H  A+   R       
Sbjct: 38 GIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVS 90

>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A Length = 101

 Score = 51.9 bits (125), Expect = 1e-09
 Identities = 14/41 (34%), Positives = 25/41 (60%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
             G AA DGRL +GD+I+SV+G D+++   ++   + +  
Sbjct: 45 KENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNA 85

>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1 Length = 109

 Score = 61.3 bits (149), Expect = 5e-13
 Identities = 13/54 (24%), Positives = 28/54 (51%)

Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKP 97
           + +H++ P G   KD RLK GDQ++ +  E    ++  +A + +     +++ 
Sbjct: 42 LVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRAKLRSES 95

>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1 Length = 109

 Score = 55.9 bits (135), Expect = 6e-11
 Identities = 15/39 (38%), Positives = 23/39 (58%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
          +PGG    DGRL  GDQ++S++   +   S EE  +I+ 
Sbjct: 49 IPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIIT 87

>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 107

 Score = 61.3 bits (149), Expect = 5e-13
 Identities = 17/48 (35%), Positives = 25/48 (52%)

Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
            GI V  I   G AAK+  L+  D+I+E+ G D    TH +A+   +
Sbjct: 40 SEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFK 87

>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 107

 Score = 51.6 bits (124), Expect = 2e-09
 Identities = 12/39 (30%), Positives = 20/39 (51%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
          V  G AA +G L   D+I+ V+G D+   + ++     K
Sbjct: 49 VDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFK 87

>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A Length = 119

 Score = 61.3 bits (149), Expect = 5e-13
 Identities = 18/48 (37%), Positives = 24/48 (50%)

Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
            GI +  I   G A     L+ GDQIL + G D RN +H +A   L+
Sbjct: 37 GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALK 84

>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A Length = 119

 Score = 53.2 bits (128), Expect = 7e-10
 Identities = 19/41 (46%), Positives = 26/41 (63%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
          + GG A   G L KGDQI+SV+G D+R+ S E+ A  +K  
Sbjct: 46 LAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNA 86

>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic} Length = 108

 Score = 61.2 bits (149), Expect = 5e-13
 Identities = 14/55 (25%), Positives = 25/55 (45%)

Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK 96
            GI V  + P  AAA D R++  D+IL +   + + +  +  +  LR      +
Sbjct: 43 ATGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMAQSDVVEVLRNAGNPVR 97

>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic} Length = 108

 Score = 53.1 bits (128), Expect = 5e-10
 Identities = 14/39 (35%), Positives = 25/39 (64%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
          +PG  AA DGR+   D+I+ VD  +V+  +Q +V  +++
Sbjct: 52 IPGSAAALDGRIEPNDKILRVDDVNVQGMAQSDVVEVLR 90

>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A Length = 94

 Score = 60.8 bits (148), Expect = 6e-13
 Identities = 17/53 (32%), Positives = 29/53 (54%)

Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK 96
           I +  I   GAA KD RL+ GD++L +   + +++ H +A+A L+ T     
Sbjct: 34 SIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVY 86

>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A Length = 94

 Score = 50.8 bits (122), Expect = 3e-09
 Identities = 15/41 (36%), Positives = 25/41 (60%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
          + GG A  DGRL  GD++++V+ T+++D   EE    +K  
Sbjct: 41 IEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNT 81

>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A Length = 96

 Score = 60.8 bits (148), Expect = 6e-13
 Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 5/68 (7%)

Query: 41  MKGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK-----A 95
            + G  + D+        D++L+ GD I +  G+    +    + A  +    K      
Sbjct: 29  NEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVSYALFKGANGKVSMEVT 88

Query: 96  KPCPTVPS 103
           +P P   S
Sbjct: 89  RPKPAAAS 96

>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A Length = 96

 Score = 58.5 bits (142), Expect = 3e-12
 Identities = 9/40 (22%), Positives = 16/40 (40%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
          + G     D +L +GD I   +G  +     +    + KG
Sbjct: 39 IQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVSYALFKG 78

>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A Length = 96

 Score = 43.5 bits (103), Expect = 2e-06
 Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 2/37 (5%)

Query: 137 DLLEFVDVELTKKAGKGFGLSLVGRKQGPGVFISDLV 173
           + LE  +V+L KKAGK  GLSL   +   G  I+DL+
Sbjct: 5   NSLEKFNVDLMKKAGKELGLSLSPNE--IGCTIADLI 39

>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 111

 Score = 60.8 bits (148), Expect = 6e-13
 Identities = 17/54 (31%), Positives = 28/54 (51%)

Query: 43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK 96
           G++V  I P G A +D RL+ GD IL++ G + + +T  +    LR      +
Sbjct: 38 SGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVLRNCGNSVR 91

>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 111

 Score = 56.6 bits (137), Expect = 3e-11
 Identities = 18/41 (43%), Positives = 28/41 (68%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
          VPGG+A  DGRL  GD I+ + GT+V+  + E+VA +++  
Sbjct: 46 VPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVLRNC 86

>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens} Length = 92

 Score = 60.5 bits (147), Expect = 6e-13
 Identities = 16/66 (24%), Positives = 30/66 (45%)

Query: 29 VRDKSQEEVATIMKGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHL 88
          V+    EE    +   I V +I  +  AA+D  ++ GD +L++ G    N++   A   +
Sbjct: 9  VKSAKNEEYGLRLASHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLI 68

Query: 89 RLTPAK 94
            +  K
Sbjct: 69 ERSKGK 74

>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens} Length = 92

 Score = 51.6 bits (124), Expect = 1e-09
 Identities = 10/40 (25%), Positives = 22/40 (55%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
              +AA DG + +GD ++ ++GT   + S  +  T+++ 
Sbjct: 31 SQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIER 70

>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens} Length = 121

 Score = 61.3 bits (149), Expect = 7e-13
 Identities = 19/53 (35%), Positives = 30/53 (56%)

Query: 42  KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK 94
              I V +I P GAA +D RLK GD+++E+ G D    +  + ++ LR T  +
Sbjct: 57  SAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLRSTKME 109

>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens} Length = 121

 Score = 57.4 bits (139), Expect = 2e-11
 Identities = 18/39 (46%), Positives = 28/39 (71%)

Query: 4   VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
           +P G A  DGRL  GD+++ V+G D+  KSQEEV ++++
Sbjct: 66  LPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLR 104

>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 113

 Score = 60.8 bits (148), Expect = 7e-13
 Identities = 19/48 (39%), Positives = 25/48 (52%)

Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
            GI V  I   G A     L+ GD+IL + G + RN TH +A A L+
Sbjct: 38 GEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALK 85

>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 113

 Score = 52.4 bits (126), Expect = 1e-09
 Identities = 15/41 (36%), Positives = 26/41 (63%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
          + GG A   G L +GD+I+SV+G ++R+ + E+ A  +K  
Sbjct: 47 LAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRA 87

>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens} Length = 118

 Score = 60.9 bits (148), Expect = 7e-13
 Identities = 15/51 (29%), Positives = 28/51 (54%)

Query: 42  KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTP 92
              I V  + P G  ++D R+K GD +L + G +   ++ ++A+A L+ T 
Sbjct: 52  DLPIYVISVEPGGVISRDGRIKTGDILLNVDGVELTEVSRSEAVALLKRTS 102

>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens} Length = 118

 Score = 54.7 bits (132), Expect = 2e-10
 Identities = 14/39 (35%), Positives = 26/39 (66%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
           PGG+ + DGR+  GD +++VDG ++ + S+ E   ++K
Sbjct: 61 EPGGVISRDGRIKTGDILLNVDGVELTEVSRSEAVALLK 99

>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 105

 Score = 60.8 bits (148), Expect = 7e-13
 Identities = 16/46 (34%), Positives = 23/46 (50%)

Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
          GI V  I   GAA +   L+ GD++L + G D     H  A++ L 
Sbjct: 39 GIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLT 84

>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 105

 Score = 50.4 bits (121), Expect = 5e-09
 Identities = 11/41 (26%), Positives = 21/41 (51%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
            GG A   G L  GD+++S++G DV +   +   +++   
Sbjct: 46 AEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAA 86

>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens} Length = 97

 Score = 60.4 bits (147), Expect = 9e-13
 Identities = 17/55 (30%), Positives = 26/55 (47%)

Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK 96
            GI V  I    A   D R++ GDQI+ + G + +  T+ +A+  LR T     
Sbjct: 32 PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVL 86

>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens} Length = 97

 Score = 51.5 bits (124), Expect = 2e-09
 Identities = 11/41 (26%), Positives = 23/41 (56%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
                  DGR+  GDQI++VDGT+++  + ++   +++  
Sbjct: 41 TKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHT 81

>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus} Length = 113

 Score = 60.5 bits (147), Expect = 9e-13
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 5/69 (7%)

Query: 42  KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK-----AK 96
           K GI V  +   GAA +D R++  D ++E+ G     +T + A + LR T  +      +
Sbjct: 34  KLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFMIGR 93

Query: 97  PCPTVPSEP 105
             P   SE 
Sbjct: 94  ERPGEQSEV 102

>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus} Length = 113

 Score = 52.4 bits (126), Expect = 1e-09
 Identities = 13/41 (31%), Positives = 22/41 (53%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
            GG A  DGR+   D ++ VDGT +   +Q   A++++  
Sbjct: 43 TEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNT 83

>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens} Length = 97

 Score = 59.9 bits (146), Expect = 9e-13
 Identities = 15/53 (28%), Positives = 29/53 (54%)

Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK 96
           +++  + P G A ++  +K GD++L + G      THA+AM+ L+    +A 
Sbjct: 33 PVVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEAA 85

>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens} Length = 97

 Score = 53.0 bits (128), Expect = 5e-10
 Identities = 14/39 (35%), Positives = 23/39 (58%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
           PGG A  +G +  GD+++SVDG  +   +  E  +I+K
Sbjct: 40 RPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILK 78

>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens} Length = 123

 Score = 60.5 bits (147), Expect = 1e-12
 Identities = 16/46 (34%), Positives = 28/46 (60%)

Query: 44  GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
           GI +  +  +  A K+  LK GD+I+E+ G D R+ +H +A+  +R
Sbjct: 60  GIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIR 105

>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens} Length = 123

 Score = 51.7 bits (124), Expect = 2e-09
 Identities = 14/39 (35%), Positives = 22/39 (56%)

Query: 4   VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
           +    A  +G L  GD+I+ VDG D+RD S E+    ++
Sbjct: 67  LEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIR 105

>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 60.1 bits (146), Expect = 1e-12
 Identities = 17/60 (28%), Positives = 30/60 (50%)

Query: 30 RDKSQEEVATIMKGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
          R          +  GI +  +  +  A K+  LK GD+I+E+ G D R+ +H +A+  +R
Sbjct: 26 RGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIR 85

>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 50.8 bits (122), Expect = 3e-09
 Identities = 14/39 (35%), Positives = 22/39 (56%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
          +    A  +G L  GD+I+ VDG D+RD S E+    ++
Sbjct: 47 LEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIR 85

>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens} Length = 95

 Score = 59.6 bits (145), Expect = 1e-12
 Identities = 14/46 (30%), Positives = 24/46 (52%)

Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
          G+ + D+   G AA+D RL   D++L + G D +  T   A   ++
Sbjct: 30 GVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQIIQ 75

>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens} Length = 95

 Score = 58.1 bits (141), Expect = 5e-12
 Identities = 14/39 (35%), Positives = 27/39 (69%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
          + GG+AA DGRL   D++++++G D++  + E  A I++
Sbjct: 37 LEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQIIQ 75

>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens} Length = 95

 Score = 41.5 bits (98), Expect = 1e-05
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 139 LEFVDVELTKKA-GKGFGLSLVGRKQGPGVFISDLV 173
           +E + V L K+  G+  G+ LV R   PGVFI DL+
Sbjct: 2   MEILQVALHKRDSGEQLGIKLVRRTDEPGVFILDLL 37

>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2 Length = 130

 Score = 60.6 bits (147), Expect = 1e-12
 Identities = 11/51 (21%), Positives = 26/51 (50%)

Query: 42  KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTP 92
              + ++ I+   A+ +   ++ GD+IL+L G   + +T  +A   ++  P
Sbjct: 56  DKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALP 106

>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2 Length = 130

 Score = 54.0 bits (130), Expect = 4e-10
 Identities = 9/41 (21%), Positives = 19/41 (46%)

Query: 4   VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
             G  +     +  GD+I+ + GT ++  ++ E   I+K  
Sbjct: 65  FKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKAL 105

>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 93

 Score = 59.6 bits (145), Expect = 1e-12
 Identities = 15/48 (31%), Positives = 22/48 (45%)

Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
             I +  + P G A +   LK GDQ+L + G       H KA+  L+
Sbjct: 29 NSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLK 76

>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 93

 Score = 53.0 bits (128), Expect = 5e-10
 Identities = 15/41 (36%), Positives = 25/41 (60%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
          +PGG+A   G L +GDQ++SV+G  V  +  E+   ++K  
Sbjct: 38 IPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAA 78

>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 117

 Score = 60.2 bits (146), Expect = 1e-12
 Identities = 16/60 (26%), Positives = 31/60 (51%)

Query: 30 RDKSQEEVATIMKGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
          +   +         GI +  +  +  A K   LK GD+ILE++G D +N +H++A+  ++
Sbjct: 37 QTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNASHSEAVEAIK 96

>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 117

 Score = 50.9 bits (122), Expect = 5e-09
 Identities = 11/41 (26%), Positives = 18/41 (43%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
          +    A     L  GD+I+ V G D+++ S  E    +K  
Sbjct: 58 LEDSPAGKTNALKTGDKILEVSGVDLQNASHSEAVEAIKNA 98

>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A Length = 120

 Score = 60.1 bits (146), Expect = 1e-12
 Identities = 14/46 (30%), Positives = 27/46 (58%)

Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
           I +  ++P G AA+  +L+ GD+I+ + G     +TH +A+  L+
Sbjct: 54 PIFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLLK 99

>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A Length = 120

 Score = 53.5 bits (129), Expect = 6e-10
 Identities = 11/39 (28%), Positives = 21/39 (53%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
           P G+AA   +L  GD+I+++ GT     +  +   ++K
Sbjct: 61 HPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLLK 99

>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens} Length = 112

 Score = 59.7 bits (145), Expect = 2e-12
 Identities = 13/53 (24%), Positives = 31/53 (58%)

Query: 44  GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK 96
            + V  +  +G A +  +++ GD+ILE+ GE  +N+ H++A+  ++    + +
Sbjct: 50  DLYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKHSRAIELIKNGGRRVR 102

>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens} Length = 112

 Score = 50.4 bits (121), Expect = 5e-09
 Identities = 9/41 (21%), Positives = 19/41 (46%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
             G A   G++  GD+I+ ++G   ++        ++K G
Sbjct: 57 AEDGPAERSGKMRIGDEILEINGETTKNMKHSRAIELIKNG 97

>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster} Length = 106

 Score = 59.7 bits (145), Expect = 2e-12
 Identities = 10/54 (18%), Positives = 20/54 (37%)

Query: 41 MKGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK 94
           + G  + D+        D++L+ GD I +  G+    +      A  +    K
Sbjct: 23 NEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGK 76

>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster} Length = 106

 Score = 58.9 bits (143), Expect = 3e-12
 Identities = 9/40 (22%), Positives = 16/40 (40%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
          + G     D +L +GD I   +G  +     +    + KG
Sbjct: 33 IQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKG 72

>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster} Length = 106

 Score = 44.3 bits (105), Expect = 1e-06
 Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 2/35 (5%)

Query: 139 LEFVDVELTKKAGKGFGLSLVGRKQGPGVFISDLV 173
           LE  +V+L KKAGK  GLSL   +   G  I+DL+
Sbjct: 1   LEKFNVDLMKKAGKELGLSLSPNE--IGCTIADLI 33

>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 60.1 bits (146), Expect = 2e-12
 Identities = 20/51 (39%), Positives = 32/51 (62%)

Query: 42  KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTP 92
              I V  ++ +GAA++D RLK GDQI+ + G+    +TH +A+A L+ T 
Sbjct: 52  DLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTK 102

>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 54.7 bits (132), Expect = 2e-10
 Identities = 16/41 (39%), Positives = 24/41 (58%)

Query: 4   VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
              G A+ DGRL +GDQI++V+G  +   + EE   I+K  
Sbjct: 61  FAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRT 101

>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 59.6 bits (145), Expect = 2e-12
 Identities = 15/53 (28%), Positives = 28/53 (52%)

Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK 96
           + V  +  +G A +  RL+ GD +L + GE  + +THA+A+  +R    +  
Sbjct: 39 PLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERIRAGGPQLH 91

>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 49.6 bits (119), Expect = 9e-09
 Identities = 9/41 (21%), Positives = 19/41 (46%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
          +  G A   GRL  GD ++ ++G   +  +  +    ++ G
Sbjct: 46 LKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERIRAG 86

>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens} Length = 88

 Score = 58.9 bits (143), Expect = 2e-12
 Identities = 16/61 (26%), Positives = 28/61 (45%)

Query: 29 VRDKSQEEVATIMKGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHL 88
          ++ ++ EE    +   I V ++   G A KD  L  GD IL++ G    N++   A   +
Sbjct: 7  MKSRANEEYGLRLGSQIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLI 66

Query: 89 R 89
           
Sbjct: 67 E 67

>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens} Length = 88

 Score = 51.9 bits (125), Expect = 1e-09
 Identities = 11/40 (27%), Positives = 21/40 (52%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
             G+A  DG L +GD I+ ++GT   + S  +   +++ 
Sbjct: 29 TRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEK 68

>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A Length = 104

 Score = 59.2 bits (144), Expect = 2e-12
 Identities = 18/48 (37%), Positives = 24/48 (50%)

Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
            GI +  I   G A     L+ GDQIL + G D RN +H +A   L+
Sbjct: 34 GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALK 81

>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A Length = 104

 Score = 53.1 bits (128), Expect = 4e-10
 Identities = 19/41 (46%), Positives = 26/41 (63%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
          + GG A   G L KGDQI+SV+G D+R+ S E+ A  +K  
Sbjct: 43 LAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNA 83

>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens} Length = 92

 Score = 58.8 bits (143), Expect = 3e-12
 Identities = 22/51 (43%), Positives = 26/51 (50%)

Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTP 92
            G+ V DI   G A  D RL  GDQIL + GED RN T     A L+ + 
Sbjct: 28 DTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLKCSL 78

>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens} Length = 92

 Score = 57.3 bits (139), Expect = 9e-12
 Identities = 23/39 (58%), Positives = 31/39 (79%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
          V GGIA  DGRL++GDQI+ V+G DVR+ +QE VA ++K
Sbjct: 37 VKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLK 75

>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens} Length = 92

 Score = 44.9 bits (107), Expect = 4e-07
 Identities = 17/34 (50%), Positives = 25/34 (73%)

Query: 140 EFVDVELTKKAGKGFGLSLVGRKQGPGVFISDLV 173
           + + + L KK GKG GLS+VG++   GVF+SD+V
Sbjct: 4   DTLTIGLQKKPGKGLGLSIVGKRNDTGVFVSDIV 37

>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A Length = 131

 Score = 59.8 bits (145), Expect = 3e-12
 Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 4/58 (6%)

Query: 44  GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKPCPTV 101
              +  +     A     L+ GD++LE  G   +  T  +    +     ++KP P V
Sbjct: 66  CAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIIL----ESKPEPQV 119

>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A Length = 131

 Score = 57.9 bits (140), Expect = 2e-11
 Identities = 12/39 (30%), Positives = 21/39 (53%)

Query: 4   VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
             G +A T G L  GD+++  +G  ++  + EEV  I+ 
Sbjct: 73  KKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIIL 111

>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 129

 Score = 59.4 bits (144), Expect = 3e-12
 Identities = 11/48 (22%), Positives = 22/48 (45%)

Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
            GI V  + P  AA  +  ++  D+I+ + G + +   +   +  LR
Sbjct: 45 ASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANHDVVEVLR 92

>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 129

 Score = 52.1 bits (125), Expect = 2e-09
 Identities = 10/39 (25%), Positives = 24/39 (61%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
          +PG  A  +G +   D+I++VDG +++  +  +V  +++
Sbjct: 54 IPGSAAYHNGHIQVNDKIVAVDGVNIQGFANHDVVEVLR 92

>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 129

 Score = 36.6 bits (85), Expect = 9e-04
 Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 6/45 (13%)

Query: 135 EDDLLEFVDVELTKKAGKGFGLSLVGRKQGP------GVFISDLV 173
           +  L E  +VEL +K G+  G+ +VG           G+++  ++
Sbjct: 10  DSSLFETYNVELVRKDGQSLGIRIVGYVGTSHTGEASGIYVKSVI 54

>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1 Length = 127

 Score = 59.5 bits (144), Expect = 3e-12
 Identities = 12/51 (23%), Positives = 25/51 (49%)

Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTP 92
          K  +++ D+   GAA +   ++ GD IL +      ++++  A+  LR   
Sbjct: 32 KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIA 82

>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1 Length = 127

 Score = 54.9 bits (132), Expect = 2e-10
 Identities = 11/40 (27%), Positives = 21/40 (52%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
          + GG A   G +  GD I++V+   + D S +    +++G
Sbjct: 41 IRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRG 80

>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1 Length = 127

 Score = 42.9 bits (101), Expect = 5e-06
 Identities = 12/34 (35%), Positives = 16/34 (47%)

Query: 140 EFVDVELTKKAGKGFGLSLVGRKQGPGVFISDLV 173
             + V L K+   G G  +  R   P V ISDL+
Sbjct: 8   NVISVRLFKRKVGGLGFLVKERVSKPPVIISDLI 41

>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens} Length = 90

 Score = 58.4 bits (142), Expect = 3e-12
 Identities = 15/80 (18%), Positives = 29/80 (36%), Gaps = 16/80 (20%)

Query: 33 SQEEVATIMKG----------------GILVHDIYPEGAAAKDARLKFGDQILELTGEDF 76
          S E+   + +                  I +  I P GAA  D RL+ GD+++ + G   
Sbjct: 1  SMEQDIFLWRKETGFGFRILGGNEPGEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPV 60

Query: 77 RNITHAKAMAHLRLTPAKAK 96
             +H   +  ++    +  
Sbjct: 61 IGKSHQLVVQLMQQAAKQGH 80

>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens} Length = 90

 Score = 56.5 bits (137), Expect = 2e-11
 Identities = 21/39 (53%), Positives = 27/39 (69%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
          VP G A TDGRL  GD+++SVDGT V  KS + V  +M+
Sbjct: 35 VPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVVQLMQ 73

>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B Length = 112

 Score = 58.6 bits (142), Expect = 5e-12
 Identities = 12/51 (23%), Positives = 25/51 (49%)

Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTP 92
          K  +++ D+   GAA +   ++ GD IL +      ++++  A+  LR   
Sbjct: 25 KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIA 75

>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B Length = 112

 Score = 54.0 bits (130), Expect = 3e-10
 Identities = 11/40 (27%), Positives = 21/40 (52%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
          + GG A   G +  GD I++V+   + D S +    +++G
Sbjct: 34 IRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRG 73

>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B Length = 112

 Score = 42.5 bits (100), Expect = 6e-06
 Identities = 12/32 (37%), Positives = 16/32 (50%)

Query: 142 VDVELTKKAGKGFGLSLVGRKQGPGVFISDLV 173
           + V L K+   G G  +  R   P V ISDL+
Sbjct: 3   ISVRLFKRKVGGLGFLVKERVSKPPVIISDLI 34

>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1 Length = 98

 Score = 57.7 bits (140), Expect = 7e-12
 Identities = 18/46 (39%), Positives = 25/46 (54%)

Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
          GI +  I P+  A    RLK GD+IL L G+D RN T    +  ++
Sbjct: 38 GIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIK 83

>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1 Length = 98

 Score = 51.5 bits (124), Expect = 2e-09
 Identities = 16/39 (41%), Positives = 26/39 (66%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
          VP   A   GRL  GD+I+S++G DVR+ +++ V  ++K
Sbjct: 45 VPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIK 83

>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A Length = 90

 Score = 57.3 bits (139), Expect = 8e-12
 Identities = 18/48 (37%), Positives = 26/48 (54%)

Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
          K  IL+  I+   AA +   L  GD IL + GED  + TH +A+  L+
Sbjct: 29 KMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALK 76

>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A Length = 90

 Score = 48.0 bits (115), Expect = 2e-08
 Identities = 12/41 (29%), Positives = 18/41 (43%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
            G  A     L  GD I+SV+G D+   + +E    +K  
Sbjct: 38 FKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKT 78

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus} Length = 263

 Score = 60.9 bits (147), Expect = 9e-12
 Identities = 20/66 (30%), Positives = 30/66 (45%)

Query: 42  KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKPCPTV 101
           K  IL+  I+   AA +   L  GD IL + GED  + TH +A+  L+ T  +       
Sbjct: 102 KMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKY 161

Query: 102 PSEPNA 107
             E + 
Sbjct: 162 MKEVSP 167

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus} Length = 263

 Score = 49.7 bits (118), Expect = 7e-08
 Identities = 12/41 (29%), Positives = 19/41 (46%)

Query: 2   RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
           +   G  A     L  GD I+SV+G D+   + +E    +K
Sbjct: 109 KIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALK 149

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A Length = 166

 Score = 59.1 bits (143), Expect = 1e-11
 Identities = 17/120 (14%), Positives = 38/120 (31%), Gaps = 36/120 (30%)

Query: 4   VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG-------------------- 43
                A+  G L  GDQ++ ++G +    S ++   ++K                     
Sbjct: 35  QANSPASLVG-LRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITMTIRDRPFERTIT 93

Query: 44  --------------GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
                            +  I  + +AA++  L     I E+ G++   +  ++    L 
Sbjct: 94  MHKDSTGHVGFIFKNGKITSIVKDSSAARNG-LLTEHNICEINGQNVIGLKDSQIADILS 152

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A Length = 166

 Score = 50.2 bits (120), Expect = 2e-08
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
           GI V  +     A+    L+FGDQ+L++ GE+    +  KA   L+
Sbjct: 27 NGIFVQLVQANSPASL-VGLRFGDQVLQINGENCAGWSSDKAHKVLK 72

>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A Length = 124

 Score = 57.9 bits (140), Expect = 1e-11
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 44  GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPA 93
           GI V  +  +  AAK+  L+ GDQIL +   DF NI   +A+  L   P 
Sbjct: 52  GIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPK 100

>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A Length = 124

 Score = 46.7 bits (111), Expect = 2e-07
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
          +    AA +G L +GDQI+ V+  D  +  +EE    +  
Sbjct: 59 LEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLD 97

>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 57.3 bits (139), Expect = 1e-11
 Identities = 15/71 (21%), Positives = 30/71 (42%)

Query: 42  KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKPCPTV 101
              IL+  +   G+A +D RL  GD+++ + G      TH   +  +       +   TV
Sbjct: 33  GQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQVNLTV 92

Query: 102 PSEPNANATTG 112
             +  +  ++G
Sbjct: 93  RRKVLSGPSSG 103

>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 56.2 bits (136), Expect = 4e-11
 Identities = 15/39 (38%), Positives = 21/39 (53%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
          +  G A  DGRL  GD+++ VDG  V  K+   V  +M 
Sbjct: 42 IAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMH 80

>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus} Length = 85

 Score = 56.9 bits (138), Expect = 1e-11
 Identities = 11/50 (22%), Positives = 23/50 (46%)

Query: 43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTP 92
            + +  +  +G AA D +++ GD I+ +        THA+ +   +  P
Sbjct: 25 EFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIP 74

>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus} Length = 85

 Score = 53.4 bits (129), Expect = 2e-10
 Identities = 15/40 (37%), Positives = 22/40 (55%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
          V  G AA DG++  GD I+SV+ T V   +  +V  I + 
Sbjct: 33 VLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQS 72

>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens} Length = 103

 Score = 57.4 bits (139), Expect = 1e-11
 Identities = 15/46 (32%), Positives = 24/46 (52%)

Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
           IL+ +I+P   A +   L  GD IL + G + R+  H +A+  L 
Sbjct: 36 PILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILS 81

>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens} Length = 103

 Score = 50.4 bits (121), Expect = 5e-09
 Identities = 15/39 (38%), Positives = 22/39 (56%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
           PG  A   G L  GD I++V+G ++RD   +E  TI+ 
Sbjct: 43 HPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILS 81

>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens} Length = 117

 Score = 57.8 bits (140), Expect = 1e-11
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDF-RNITHAKAMAHLRLTP 92
          + GI V +I     A +D RLK  DQIL + G+   + ITH +A++ L+   
Sbjct: 48 ELGIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITHQQAISILQKAK 99

>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens} Length = 117

 Score = 49.3 bits (118), Expect = 2e-08
 Identities = 11/41 (26%), Positives = 25/41 (60%), Gaps = 1/41 (2%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDV-RDKSQEEVATIMKG 43
            G +A  DGRL + DQI++++G  + +  + ++  +I++ 
Sbjct: 57 QEGSVAHRDGRLKETDQILAINGQALDQTITHQQAISILQK 97

>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens} Length = 112

 Score = 57.5 bits (139), Expect = 1e-11
 Identities = 15/48 (31%), Positives = 24/48 (50%)

Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
             IL+ +I+P   A +   L  GD IL + G + R+  H +A+  L 
Sbjct: 52 GVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILS 99

>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens} Length = 112

 Score = 51.7 bits (124), Expect = 2e-09
 Identities = 15/39 (38%), Positives = 22/39 (56%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
           PG  A   G L  GD I++V+G ++RD   +E  TI+ 
Sbjct: 61 HPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILS 99

>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens} Length = 128

 Score = 57.5 bits (139), Expect = 2e-11
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 42  KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDF-RNITHAKAMAHLRLTPAKAK 96
           K  I V D+ P   A +D RLK  DQIL +      +NI+H +A+A L+ T    +
Sbjct: 53  KVDIFVKDVQPGSVADRDQRLKENDQILAINHTPLDQNISHQQAIALLQQTTGSLR 108

>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens} Length = 128

 Score = 51.3 bits (123), Expect = 4e-09
 Identities = 11/40 (27%), Positives = 25/40 (62%), Gaps = 1/40 (2%)

Query: 4   VPGGIAATDGRLLKGDQIMSVDGTDV-RDKSQEEVATIMK 42
            PG +A  D RL + DQI++++ T + ++ S ++   +++
Sbjct: 62  QPGSVADRDQRLKENDQILAINHTPLDQNISHQQAIALLQ 101

>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 124

 Score = 57.2 bits (138), Expect = 2e-11
 Identities = 16/42 (38%), Positives = 27/42 (64%)

Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAM 85
          GI + +I P   AAKD R++ GD+I+++ G + +N   A A+
Sbjct: 49 GIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQNREEAVAL 90

>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 124

 Score = 47.9 bits (114), Expect = 8e-08
 Identities = 12/41 (29%), Positives = 24/41 (58%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
           P  IAA DGR+ +GD+I+ ++G +V+++ +       +  
Sbjct: 56 DPNSIAAKDGRIREGDRIIQINGIEVQNREEAVALLTSEEN 96

>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A Length = 114

 Score = 56.7 bits (137), Expect = 3e-11
 Identities = 8/46 (17%), Positives = 19/46 (41%)

Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
           + +  ++    AA D  +  GD+I  + G   +  T  +    ++
Sbjct: 51 CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQ 96

>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A Length = 114

 Score = 51.3 bits (123), Expect = 3e-09
 Identities = 13/39 (33%), Positives = 23/39 (58%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
               AA DG +  GD+I  V+G  ++ K++ EVA +++
Sbjct: 58 FDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQ 96

>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 56.3 bits (136), Expect = 4e-11
 Identities = 12/46 (26%), Positives = 22/46 (47%)

Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
          G  +  I P G+A +  +L  G Q+LE  G    + T+ +  + + 
Sbjct: 50 GAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIIS 95

>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 56.3 bits (136), Expect = 4e-11
 Identities = 14/39 (35%), Positives = 25/39 (64%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
          +PGG A   G+L++G Q++  +G  +  K+ EEV +I+ 
Sbjct: 57 LPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIIS 95

>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A Length = 114

 Score = 56.3 bits (136), Expect = 4e-11
 Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
          K GI +  + P   +A+   L+ GDQI+E+ G DF N+ H +A+  L+
Sbjct: 40 KPGIFISHVKPGSLSAEV-GLEIGDQIVEVNGVDFSNLDHKEAVNVLK 86

>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A Length = 114

 Score = 42.5 bits (100), Expect = 6e-06
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 5  PGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
          PG ++A  G L  GDQI+ V+G D  +   +E   ++K  
Sbjct: 50 PGSLSAEVG-LEIGDQIVEVNGVDFSNLDHKEAVNVLKSS 88

>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A Length = 97

 Score = 55.8 bits (135), Expect = 5e-11
 Identities = 9/48 (18%), Positives = 21/48 (43%)

Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
             I++  +   G A +   +  GD+IL +     +    ++A+  L+
Sbjct: 29 FDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQ 76

>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A Length = 97

 Score = 51.9 bits (125), Expect = 1e-09
 Identities = 9/43 (20%), Positives = 22/43 (51%)

Query: 2  RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
              GG+A   G +  GD+I++++ + ++ K   E   +++  
Sbjct: 36 SLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMA 78

>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 55.5 bits (134), Expect = 6e-11
 Identities = 13/47 (27%), Positives = 19/47 (40%)

Query: 43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
              +  I   G+A    +LK G  ILE+ G   R   H +A   + 
Sbjct: 32 PLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIA 78

>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 50.9 bits (122), Expect = 4e-09
 Identities = 14/41 (34%), Positives = 19/41 (46%)

Query: 2  RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
              GG A   G+L  G  I+ V+G  +R K   E A I+ 
Sbjct: 38 TIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIA 78

>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 108

 Score = 55.5 bits (134), Expect = 6e-11
 Identities = 11/49 (22%), Positives = 24/49 (48%)

Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTP 92
           I++  +  +G A +   L  GD+++ +      N + A+A+  L+  P
Sbjct: 45 VIVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLAEAVEILKAVP 93

>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 108

 Score = 54.3 bits (131), Expect = 2e-10
 Identities = 14/40 (35%), Positives = 22/40 (55%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
          V  G+A   G LL GD+++SV+   + + S  E   I+K 
Sbjct: 52 VADGVAERSGGLLPGDRLVSVNEYCLDNTSLAEAVEILKA 91

>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 104

 Score = 55.4 bits (134), Expect = 7e-11
 Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
          GI +  + P+  A +   L+ GDQ+L +   DF++I H+KA+  L+
Sbjct: 42 GIFISKVIPDSDAHRAG-LQEGDQVLAVNDVDFQDIEHSKAVEILK 86

>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 104

 Score = 42.7 bits (101), Expect = 4e-06
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 5  PGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
          P   A   G L +GDQ+++V+  D +D    +   I+K  
Sbjct: 50 PDSDAHRAG-LQEGDQVLAVNDVDFQDIEHSKAVEILKTA 88

>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A Length = 125

 Score = 55.9 bits (135), Expect = 7e-11
 Identities = 8/46 (17%), Positives = 19/46 (41%)

Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
           + +  ++    AA D  +  GD+I  + G   +  T  +    ++
Sbjct: 46 CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQ 91

>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A Length = 125

 Score = 52.5 bits (126), Expect = 1e-09
 Identities = 13/39 (33%), Positives = 23/39 (58%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
               AA DG +  GD+I  V+G  ++ K++ EVA +++
Sbjct: 53 FDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQ 91

>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 55.5 bits (134), Expect = 8e-11
 Identities = 17/77 (22%), Positives = 28/77 (36%), Gaps = 6/77 (7%)

Query: 42  KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPA----KAKP 97
           K  I +  I P     +   L  GD IL + G    + +  +A   L         +  P
Sbjct: 41  KSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLASISEKVRLEILP 100

Query: 98  CPTV--PSEPNANATTG 112
            P    P  P++  ++G
Sbjct: 101 VPQSQRPLRPSSGPSSG 117

>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 53.2 bits (128), Expect = 6e-10
 Identities = 13/41 (31%), Positives = 19/41 (46%)

Query: 2  RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
          R  P  +    G L  GD I+S+DGT +   S  E   ++ 
Sbjct: 48 RIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLA 88

>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 55.6 bits (134), Expect = 9e-11
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
          KGGI V  +     A +   L++GDQ+LE  G + R+ T  +A   + 
Sbjct: 41 KGGIYVSKVTVGSIAHQA-GLEYGDQLLEFNGINLRSATEQQARLIIG 87

>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 45.5 bits (108), Expect = 5e-07
 Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
            G IA   G L  GDQ++  +G ++R  ++++   I+   
Sbjct: 50 TVGSIAHQAG-LEYGDQLLEFNGINLRSATEQQARLIIGQQ 89

>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 101

 Score = 54.7 bits (132), Expect = 1e-10
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
          GI V  + P   A K+  L+ GDQIL +  +    +THA+A+  L+
Sbjct: 36 GIYVSLVEPGSLAEKE-GLRVGDQILRVNDKSLARVTHAEAVKALK 80

>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 101

 Score = 41.6 bits (98), Expect = 1e-05
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
           PG +A  +G L  GDQI+ V+   +   +  E    +KG 
Sbjct: 43 EPGSLAEKEG-LRVGDQILRVNDKSLARVTHAEAVKALKGS 82

>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1 Length = 117

 Score = 54.8 bits (132), Expect = 2e-10
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK 96
           I++ D+ P G A  D  L+  D+++ + G    ++ H+ A+  LR +   A 
Sbjct: 47 SIVISDVLPGGPA--DGLLQENDRVVMVNGTPMEDVLHSFAVQQLRKSGKIAA 97

>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1 Length = 117

 Score = 43.6 bits (103), Expect = 2e-06
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 2/39 (5%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
          +PGG A  DG L + D+++ V+GT + D         ++
Sbjct: 54 LPGGPA--DGLLQENDRVVMVNGTPMEDVLHSFAVQQLR 90

>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1 Length = 126

 Score = 54.9 bits (132), Expect = 2e-10
 Identities = 11/57 (19%), Positives = 26/57 (45%), Gaps = 2/57 (3%)

Query: 39 TIMKGG--ILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPA 93
           +++ G  + +  +  +GAAA D  L+ GD ++ +   +    T  + +  L+    
Sbjct: 43 VVIQNGPYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITI 99

>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1 Length = 126

 Score = 53.3 bits (128), Expect = 7e-10
 Identities = 12/40 (30%), Positives = 21/40 (52%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
          +  G AA+DG L  GD ++SV   +V   +  E   +++ 
Sbjct: 57 INKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQN 96

>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A Length = 107

 Score = 54.3 bits (131), Expect = 2e-10
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK 96
           I++ D+   G A  + +L+  D++  + G    N+ HA A+  LR +   AK
Sbjct: 40 SIVISDVLKGGPA--EGQLQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAK 90

>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A Length = 107

 Score = 43.1 bits (102), Expect = 3e-06
 Identities = 8/39 (20%), Positives = 19/39 (48%), Gaps = 2/39 (5%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
          + GG A  +G+L + D++  V+G  + +         ++
Sbjct: 47 LKGGPA--EGQLQENDRVAMVNGVSMDNVEHAFAVQQLR 83

>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 128

 Score = 54.4 bits (131), Expect = 2e-10
 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
          GI +  + P   A     LK GDQILE+ G  F NI H +A+  L+
Sbjct: 47 GIYITGVDPGSEAEGS-GLKVGDQILEVNGRSFLNILHDEAVRLLK 91

>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 128

 Score = 41.7 bits (98), Expect = 1e-05
 Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 2  RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
             PG  A   G L  GDQI+ V+G    +   +E   ++K  
Sbjct: 52 GVDPGSEAEGSG-LKVGDQILEVNGRSFLNILHDEAVRLLKSS 93

>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 110

 Score = 53.9 bits (130), Expect = 2e-10
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK 96
          GI +  +  EG AA+   ++ GD++LE+ G   +   H +A+  LR      +
Sbjct: 47 GIFISRVSEEGPAARA-GVRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQ 98

>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 110

 Score = 44.3 bits (105), Expect = 1e-06
 Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
             G AA  G +  GD+++ V+G  ++     E    ++G 
Sbjct: 54 SEEGPAARAG-VRVGDKLLEVNGVALQGAEHHEAVEALRGA 93

>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens} Length = 97

 Score = 53.4 bits (129), Expect = 3e-10
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK 96
          GI +  +  EG AA+   ++ GD++LE+ G   +   H +A+  LR      +
Sbjct: 35 GIFISRVSEEGPAARA-GVRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQ 86

>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens} Length = 97

 Score = 42.7 bits (101), Expect = 3e-06
 Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
             G AA  G +  GD+++ V+G  ++     E    ++G 
Sbjct: 42 SEEGPAARAG-VRVGDKLLEVNGVALQGAEHHEAVEALRGA 81

>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A Length = 128

 Score = 54.1 bits (130), Expect = 3e-10
 Identities = 10/60 (16%), Positives = 19/60 (31%)

Query: 30  RDKSQEEVATIMKGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
                         GI +  + P G A     L   D++LE+ G +    +  +    + 
Sbjct: 52  SSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMI 111

>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A Length = 128

 Score = 52.9 bits (127), Expect = 1e-09
 Identities = 16/41 (39%), Positives = 26/41 (63%)

Query: 2   RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
           R VPGG+A + G L   D+++ V+G +V  KS ++V  +M 
Sbjct: 71  RLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMI 111

>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens} Length = 101

 Score = 53.6 bits (129), Expect = 3e-10
 Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 6/67 (8%)

Query: 41  MKGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK---- 96
           +    ++ ++   G A +   L  GD++  + G     +  A   A +R T ++      
Sbjct: 35  LLPTAVIANLLHGGPAERSGALSIGDRLTAINGTSLVGLPLAACQAAVRETKSQTSVTLS 94

Query: 97  --PCPTV 101
              CP V
Sbjct: 95  IVHCPPV 101

>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens} Length = 101

 Score = 52.4 bits (126), Expect = 1e-09
 Identities = 9/39 (23%), Positives = 18/39 (46%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
          + GG A   G L  GD++ +++GT +           ++
Sbjct: 45 LHGGPAERSGALSIGDRLTAINGTSLVGLPLAACQAAVR 83

>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 53.1 bits (128), Expect = 5e-10
 Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 1/46 (2%)

Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
          GI V  +    +A +   L  GD+I E+ G    + T   A+  L 
Sbjct: 37 GIFVSKVEEGSSAERA-GLCVGDKITEVNGLSLESTTMGSAVKVLT 81

>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 42.3 bits (100), Expect = 4e-06
 Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 1/43 (2%)

Query: 2  RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
          +   G  A   G L  GD+I  V+G  +   +      ++   
Sbjct: 42 KVEEGSSAERAG-LCVGDKITEVNGLSLESTTMGSAVKVLTSS 83

>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 114

 Score = 53.2 bits (128), Expect = 5e-10
 Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 9/69 (13%)

Query: 44  GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMA---------HLRLTPAK 94
              +  I     A + A+LK GD+IL + G+   N+ HA  +           LR+ P +
Sbjct: 44  PHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLIKDAGLSVTLRIIPQE 103

Query: 95  AKPCPTVPS 103
               P+ PS
Sbjct: 104 ELNSPSGPS 112

>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 114

 Score = 48.2 bits (115), Expect = 5e-08
 Identities = 9/39 (23%), Positives = 21/39 (53%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
          + G  A    +L  GD+I++V+G  + +    ++  ++K
Sbjct: 51 IDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLIK 89

>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A Length = 95

 Score = 52.8 bits (127), Expect = 6e-10
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK 96
          GI V  + PEG A     L+ GD+I++  G  F NI H +A++ L+      +
Sbjct: 36 GIFVTRVQPEGPA--SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVE 86

>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A Length = 95

 Score = 40.8 bits (96), Expect = 2e-05
 Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 2/41 (4%)

Query: 2  RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
          R  P G A     L  GD+I+  +G    +    +  +++K
Sbjct: 41 RVQPEGPA--SKLLQPGDKIIQANGYSFINIEHGQAVSLLK 79

>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A Length = 103

 Score = 52.8 bits (127), Expect = 6e-10
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK 96
          GI V  + PEG A     L+ GD+I++  G  F NI H +A++ L+      +
Sbjct: 44 GIFVTRVQPEGPA--SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVE 94

>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A Length = 103

 Score = 40.9 bits (96), Expect = 2e-05
 Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 2/41 (4%)

Query: 2  RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
          R  P G A     L  GD+I+  +G    +    +  +++K
Sbjct: 49 RVQPEGPA--SKLLQPGDKIIQANGYSFINIEHGQAVSLLK 87

>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1 Length = 113

 Score = 53.2 bits (128), Expect = 6e-10
 Identities = 14/42 (33%), Positives = 24/42 (57%)

Query: 2  RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
          R V GG A   G L +GD+++ ++G ++R K   EV  ++  
Sbjct: 54 RIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSD 95

>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1 Length = 113

 Score = 50.5 bits (121), Expect = 6e-09
 Identities = 13/48 (27%), Positives = 21/48 (43%)

Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
             +++  I   GAA K   L  GD++LE+ G + R     +    L 
Sbjct: 47 MDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLS 94

>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A Length = 192

 Score = 54.6 bits (131), Expect = 8e-10
 Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 9/71 (12%)

Query: 44  GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMA------HLRLT--PAKA 95
           G+ +  +   G A     L+ GD+I+ + G    + TH + +        + +       
Sbjct: 111 GLFISHLIKGGQADSVG-LQVGDEIVRINGYSISSCTHEEVINLIRTEKTVSIKVRHIGL 169

Query: 96  KPCPTVPSEPN 106
            P  + P EP 
Sbjct: 170 IPVKSSPDEPL 180

>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A Length = 192

 Score = 44.6 bits (105), Expect = 3e-06
 Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 4   VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
           + GG A + G L  GD+I+ ++G  +   + EEV  +++  
Sbjct: 118 IKGGQADSVG-LQVGDEIVRINGYSISSCTHEEVINLIRTE 157

>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A Length = 139

 Score = 53.1 bits (127), Expect = 1e-09
 Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 1/64 (1%)

Query: 26  GTDVRDKSQEEVATIMKGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAM 85
           G D               GI V  +   G A     L+ GD+I+++ G D   +TH +A 
Sbjct: 47  GIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIA-GLQIGDKIMQVNGWDMTMVTHDQAR 105

Query: 86  AHLR 89
             L 
Sbjct: 106 KRLT 109

>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A Length = 139

 Score = 40.4 bits (94), Expect = 4e-05
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 2   RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
           R   GG A   G L  GD+IM V+G D+   + ++    + 
Sbjct: 70  RVSEGGPAEIAG-LQIGDKIMQVNGWDMTMVTHDQARKRLT 109

>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1 Length = 122

 Score = 51.4 bits (123), Expect = 3e-09
 Identities = 12/55 (21%), Positives = 24/55 (43%)

Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK 96
              L+  I  +  A +   L+ GD+++ + G    + T  +A   LR +   +K
Sbjct: 44 SSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSK 98

>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1 Length = 122

 Score = 46.4 bits (110), Expect = 3e-07
 Identities = 10/39 (25%), Positives = 19/39 (48%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
               A   G L  GD++M+++G    D + EE   +++
Sbjct: 53 EADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLR 91

>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} PDB: 3nfl_A 2vph_A Length = 107

 Score = 49.8 bits (119), Expect = 9e-09
 Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 44 GILVHDIYPEGAAAK-DARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK 96
           ++V  + P   A     RL  GDQ++ + G D    TH + +  ++ +  +  
Sbjct: 44 PVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHS 97

>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} PDB: 3nfl_A 2vph_A Length = 107

 Score = 46.0 bits (109), Expect = 3e-07
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 2  RAVPGGIAA-TDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
          R  PG  A     RL +GDQ++ ++G D+ + + ++V   +K  
Sbjct: 49 RVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKAS 92

>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A Length = 97

 Score = 49.3 bits (118), Expect = 1e-08
 Identities = 14/41 (34%), Positives = 25/41 (60%)

Query: 2  RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
          R + GG+    G L  GD+I+ ++GT+V + S +++   MK
Sbjct: 42 RILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMK 82

>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A Length = 97

 Score = 47.4 bits (113), Expect = 7e-08
 Identities = 12/48 (25%), Positives = 20/48 (41%)

Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
          K    V  I   G   +   L  GD+ILE+ G +  N +  +    ++
Sbjct: 35 KQSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMK 82

>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens} Length = 95

 Score = 49.0 bits (117), Expect = 2e-08
 Identities = 10/51 (19%), Positives = 15/51 (29%)

Query: 43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPA 93
          G   +  I   G       +  GD I  + GE+     H      L+    
Sbjct: 28 GYAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYDVAKKLKELKK 78

>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens} Length = 95

 Score = 48.2 bits (115), Expect = 3e-08
 Identities = 11/42 (26%), Positives = 20/42 (47%)

Query: 2  RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
          R   GG+  +   +  GD I S++G ++      +VA  +K 
Sbjct: 34 RIKDGGVIDSVKTICVGDHIESINGENIVGWRHYDVAKKLKE 75

>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 Length = 91

 Score = 48.5 bits (116), Expect = 2e-08
 Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
          G+ V +I P G       LK  D++L++     R+      +  + 
Sbjct: 33 GVYVKNIRPAGPGDL-GGLKPYDRLLQVNHVRTRDFDCCLVVPLIA 77

>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 Length = 91

 Score = 42.0 bits (99), Expect = 5e-06
 Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 1/43 (2%)

Query: 2  RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
             P G     G L   D+++ V+    RD     V  ++   
Sbjct: 38 NIRPAGPGDLGG-LKPYDRLLQVNHVRTRDFDCCLVVPLIAES 79

>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens} Length = 90

 Score = 48.6 bits (116), Expect = 2e-08
 Identities = 8/46 (17%), Positives = 17/46 (36%), Gaps = 1/46 (2%)

Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
          GI V  +     A   ++L+  D+I+ +    F      +    + 
Sbjct: 29 GIFVASVEAGSPAEF-SQLQVDDEIIAINNTKFSYNDSKEWEEAMA 73

>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens} Length = 90

 Score = 42.8 bits (101), Expect = 2e-06
 Identities = 8/41 (19%), Positives = 15/41 (36%), Gaps = 1/41 (2%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
            G   A   +L   D+I++++ T       +E    M   
Sbjct: 36 EAGS-PAEFSQLQVDDEIIAINNTKFSYNDSKEWEEAMAKA 75

>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1 Length = 88

 Score = 48.1 bits (115), Expect = 2e-08
 Identities = 11/41 (26%), Positives = 24/41 (58%)

Query: 2  RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
          R + GG+    G L  GD+I  ++G  V +++ E++  +++
Sbjct: 31 RIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLR 71

>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1 Length = 88

 Score = 47.3 bits (113), Expect = 6e-08
 Identities = 13/48 (27%), Positives = 18/48 (37%)

Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
              +V  I   G   +   L  GD+I E+ G    N T  +    LR
Sbjct: 24 LNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLR 71

>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 47.7 bits (114), Expect = 4e-08
 Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 7/65 (10%)

Query: 44  GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK-----AKPC 98
            + V  +   G+A    +L  GDQIL++  E   +++  +A+  LR           +  
Sbjct: 32  PLTVVAVTAGGSA--HGKLFPGDQILQMNNEPAEDLSWERAVDILREAEDSLSITVVRCT 89

Query: 99  PTVPS 103
            + PS
Sbjct: 90  SSGPS 94

>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 45.0 bits (107), Expect = 4e-07
 Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 2/41 (4%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
            GG A   G+L  GDQI+ ++     D S E    I++  
Sbjct: 39 TAGGSA--HGKLFPGDQILQMNNEPAEDLSWERAVDILREA 77

>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 119

 Score = 48.3 bits (115), Expect = 4e-08
 Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 44 GILVHDIYPEGAAAK-DARLKFGDQILELTGEDFRNITHAKAMAHLR 89
           ++V  + P   A     RL  GDQ++ + G D    TH + +  ++
Sbjct: 42 PVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIK 88

>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 119

 Score = 46.0 bits (109), Expect = 3e-07
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 2  RAVPGGIAA-TDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
          R  PG  A     RL +GDQ++ ++G D+ + + ++V   +K  
Sbjct: 47 RVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKAS 90

>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} Length = 93

 Score = 47.7 bits (114), Expect = 4e-08
 Identities = 15/41 (36%), Positives = 22/41 (53%)

Query: 2  RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
          R + GG A   G +  GD++  V+G  V DK  EE+  I+ 
Sbjct: 34 RIMRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQILA 74

>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} Length = 93

 Score = 46.6 bits (111), Expect = 9e-08
 Identities = 12/48 (25%), Positives = 21/48 (43%)

Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
           G I+V  I   GAA +   +  GD++ E+ G    +    + +  L 
Sbjct: 27 TGAIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQILA 74

>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A Length = 85

 Score = 46.9 bits (112), Expect = 8e-08
 Identities = 11/46 (23%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
           + +  I P   AA+ ++L  GD ++ + G +   +TH +A   ++
Sbjct: 26 PLTISRITPGSKAAQ-SQLSQGDLVVAIDGVNTDTMTHLEAQNKIK 70

>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A Length = 85

 Score = 38.8 bits (91), Expect = 6e-05
 Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 2  RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
          R  PG  AA   +L +GD ++++DG +    +  E    +K  
Sbjct: 31 RITPGSKAA-QSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSA 72

>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens} Length = 88

 Score = 46.9 bits (112), Expect = 9e-08
 Identities = 11/46 (23%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
           + +  +   G AA+ A ++ GD +L + G + + +TH +A   ++
Sbjct: 28 PLTISSLKDGGKAAQ-ANVRIGDVVLSIDGINAQGMTHLEAQNKIK 72

>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens} Length = 88

 Score = 40.7 bits (96), Expect = 2e-05
 Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 2  RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
              GG AA    +  GD ++S+DG + +  +  E    +KG 
Sbjct: 33 SLKDGGKAA-QANVRIGDVVLSIDGINAQGMTHLEAQNKIKGC 74

>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A Length = 87

 Score = 46.1 bits (110), Expect = 2e-07
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
           I+V  +   G A   A L+ GD I+ + GE    + HA+A + +R
Sbjct: 27 PIMVTKVAERGKAKD-ADLRPGDIIVAINGESAEGMLHAEAQSKIR 71

>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A Length = 87

 Score = 39.2 bits (92), Expect = 5e-05
 Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 1/43 (2%)

Query: 2  RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
          +    G A  D  L  GD I++++G         E  + ++  
Sbjct: 32 KVAERGKAK-DADLRPGDIIVAINGESAEGMLHAEAQSKIRQS 73

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A Length = 391

 Score = 48.7 bits (115), Expect = 2e-07
 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 4/72 (5%)

Query: 38  ATIMKG---GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK 94
             +  G   GI V  +  +  AAK+  L+ GDQIL +   DF NI   +A+  L   P  
Sbjct: 23  LRLAGGNDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKG 81

Query: 95  AKPCPTVPSEPN 106
            +       + +
Sbjct: 82  EEVTILAQKKKD 93

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A Length = 391

 Score = 44.0 bits (103), Expect = 7e-06
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 2  RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
            +    AA +G L +GDQI+ V+  D  +  +EE    + 
Sbjct: 37 GVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLL 76

>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 103

 Score = 45.8 bits (109), Expect = 2e-07
 Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 11/74 (14%)

Query: 44  GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMA-------HLRLT---PA 93
            + +  +   G A++ A ++ GD +L + G   + +TH +A          L +T    +
Sbjct: 30  PLTISSLKDGGKASQ-AHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRAS 88

Query: 94  KAKPCPTVPSEPNA 107
            A     V S P++
Sbjct: 89  AAAKSEPVSSGPSS 102

>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 103

 Score = 39.7 bits (93), Expect = 5e-05
 Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 1/43 (2%)

Query: 2  RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
              GG A+    +  GD ++S+DG   +  +  E    +K  
Sbjct: 35 SLKDGGKAS-QAHVRIGDVVLSIDGISAQGMTHLEAQNKIKAC 76

>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens} Length = 89

 Score = 45.4 bits (108), Expect = 3e-07
 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
           + +  + P G AA+ A +  GD +L + GE+  ++TH +A   +R
Sbjct: 28 PLSISRLTPGGKAAQ-AGVAVGDWVLSIDGENAGSLTHIEAQNKIR 72

>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens} Length = 89

 Score = 39.2 bits (92), Expect = 5e-05
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 2  RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
          R  PGG AA  G +  GD ++S+DG +    +  E    ++  
Sbjct: 33 RLTPGGKAAQAG-VAVGDWVLSIDGENAGSLTHIEAQNKIRAC 74

>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 45.4 bits (108), Expect = 3e-07
 Identities = 9/46 (19%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
           + V  I   G AA   +++ GD+++ + G      +  +A+  ++
Sbjct: 36 PLTVSKIEDGGKAALSQKMRTGDELVNINGTPLYG-SRQEALILIK 80

>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 41.9 bits (99), Expect = 6e-06
 Identities = 11/43 (25%), Positives = 22/43 (51%)

Query: 2  RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
          +   GG AA   ++  GD++++++GT +    QE +  I    
Sbjct: 41 KIEDGGKAALSQKMRTGDELVNINGTPLYGSRQEALILIKGSF 83

>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1 Length = 111

 Score = 45.9 bits (109), Expect = 3e-07
 Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 7/76 (9%)

Query: 43  GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKA------K 96
             + VH + P  +A+  A  K GD I+ + G D + +T ++ M  L+    +        
Sbjct: 36  TPVQVHFLDPHCSASL-AGAKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMKVVS 94

Query: 97  PCPTVPSEPNANATTG 112
              +  S  N +  + 
Sbjct: 95  LLDSTSSMHNKSGPSS 110

>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1 Length = 111

 Score = 43.6 bits (103), Expect = 2e-06
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
           P   A+  G   +GD I+S+ G D +  +  EV  ++K 
Sbjct: 44 DPHCSASLAG-AKEGDYIVSIQGVDCKWLTVSEVMKLLKS 82

>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens} Length = 216

 Score = 47.5 bits (112), Expect = 4e-07
 Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
          K G  +  + P+  A   + L+  D+I+E+ G       H   ++ +R
Sbjct: 32 KPGQFIRSVDPDSPAEA-SGLRAQDRIVEVNGVCMEGKQHGDVVSAIR 78

>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens} Length = 216

 Score = 40.5 bits (94), Expect = 8e-05
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 5  PGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
          P   A   G L   D+I+ V+G  +  K   +V + ++ G
Sbjct: 42 PDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIRAG 80

>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1 Length = 103

 Score = 45.0 bits (107), Expect = 6e-07
 Identities = 21/74 (28%), Positives = 29/74 (39%), Gaps = 11/74 (14%)

Query: 44  GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMA-------HLRLT---PA 93
            +++  I P   AA  A L  GD IL + G    ++THA A          L L      
Sbjct: 30  PLVITRITPGSKAAA-ANLCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAE 88

Query: 94  KAKPCPTVPSEPNA 107
                P V S P++
Sbjct: 89  TRLWSPQVSSGPSS 102

>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1 Length = 103

 Score = 40.0 bits (94), Expect = 4e-05
 Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 1/43 (2%)

Query: 2  RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
          R  PG  AA    L  GD I+++DG      +  +    +K  
Sbjct: 35 RITPGSKAA-AANLCPGDVILAIDGFGTESMTHADAQDRIKAA 76

>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94

 Score = 44.6 bits (106), Expect = 6e-07
 Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
           + +  ++    AA  A L  GD I  + GE    +TH +A   ++
Sbjct: 33 PLTISRVHAGSKAAL-AALCPGDLIQAINGESTELMTHLEAQNRIK 77

>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94

 Score = 40.7 bits (96), Expect = 2e-05
 Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 1/43 (2%)

Query: 2  RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
          R   G  AA    L  GD I +++G      +  E    +KG 
Sbjct: 38 RVHAGSKAALAA-LCPGDLIQAINGESTELMTHLEAQNRIKGC 79

>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens} Length = 128

 Score = 45.2 bits (107), Expect = 6e-07
 Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
          K G  +  + P+  A   + L+  D+I+E+ G       H   ++ +R
Sbjct: 32 KPGQFIRSVDPDSPAEA-SGLRAQDRIVEVNGVCMEGKQHGDVVSAIR 78

>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens} Length = 128

 Score = 40.2 bits (94), Expect = 5e-05
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 5  PGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
          P   A   G L   D+I+ V+G  +  K   +V + ++ G
Sbjct: 42 PDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIRAG 80

>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens} Length = 109

 Score = 44.8 bits (106), Expect = 6e-07
 Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
           + VH + P  +A+  A  + GD I+ +   D + +T ++ M  L+
Sbjct: 45 PVQVHFLDPYCSASV-AGAREGDYIVSIQLVDCKWLTLSEVMKLLK 89

>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens} Length = 109

 Score = 44.8 bits (106), Expect = 7e-07
 Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
           P   A+  G   +GD I+S+   D +  +  EV  ++K
Sbjct: 52 DPYCSASVAG-AREGDYIVSIQLVDCKWLTLSEVMKLLK 89

>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens} Length = 98

 Score = 44.3 bits (105), Expect = 1e-06
 Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
          K G  +  + P+  A   + L+  D+I+E+ G       H   ++ +R
Sbjct: 32 KPGQFIRSVDPDSPAEA-SGLRAQDRIVEVNGVCMEGKQHGDVVSAIR 78

>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens} Length = 98

 Score = 38.9 bits (91), Expect = 8e-05
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 5  PGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
          P   A   G L   D+I+ V+G  +  K   +V + ++ G
Sbjct: 42 PDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIRAG 80

>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens} Length = 88

 Score = 43.8 bits (104), Expect = 1e-06
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 3/52 (5%)

Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPA 93
           GG  V  I     + +   LK GD I+E+  ++ + +TH + +  L  +P 
Sbjct: 26 GGGQRVKQIVD---SPRSRGLKEGDLIVEVNKKNVQALTHNQVVDMLVESPK 74

>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens} Length = 88

 Score = 42.7 bits (101), Expect = 3e-06
 Identities = 7/36 (19%), Positives = 17/36 (47%)

Query: 9  AATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
          +     L +GD I+ V+  +V+  +  +V  ++   
Sbjct: 37 SPRSRGLKEGDLIVEVNKKNVQALTHNQVVDMLVES 72

>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A* Length = 91

 Score = 43.5 bits (103), Expect = 1e-06
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
           + +  + P   AA  A L  GD I  + GE+  N+TH +A   ++
Sbjct: 28 PLAISRVTPGSKAAL-ANLCIGDVITAIDGENTSNMTHLEAQNRIK 72

>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A* Length = 91

 Score = 38.9 bits (91), Expect = 7e-05
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 2  RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
          R  PG  AA    L  GD I ++DG +  + +  E    +KG 
Sbjct: 33 RVTPGSKAAL-ANLCIGDVITAIDGENTSNMTHLEAQNRIKGC 74

>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 94

 Score = 43.4 bits (103), Expect = 1e-06
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
           I+V  +   G A   A L+ GD I+ + G+   N+ HA+A + +R
Sbjct: 31 PIIVTKVTERGKAEA-ADLRPGDIIVAINGQSAENMLHAEAQSKIR 75

>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 94

 Score = 39.6 bits (93), Expect = 5e-05
 Identities = 8/43 (18%), Positives = 17/43 (39%), Gaps = 1/43 (2%)

Query: 2  RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
          +    G A     L  GD I++++G    +    E  + ++  
Sbjct: 36 KVTERGKAEAAD-LRPGDIIVAINGQSAENMLHAEAQSKIRQS 77

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens} Length = 468

 Score = 46.1 bits (108), Expect = 2e-06
 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 4/72 (5%)

Query: 38  ATIMKG---GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK 94
             +  G   GI V  +  +  AAK+  L+ GDQIL +   DF NI   +A+  L   P  
Sbjct: 15  LRLAGGNDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKG 73

Query: 95  AKPCPTVPSEPN 106
            +       + +
Sbjct: 74  EEVTILAQKKKD 85

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens} Length = 468

 Score = 43.8 bits (102), Expect = 1e-05
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 2  RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
            +    AA +G L +GDQI+ V+  D  +  +EE    + 
Sbjct: 29 GVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLL 68

>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 106

 Score = 43.5 bits (103), Expect = 2e-06
 Identities = 13/48 (27%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
          K G+ + DI P+G A + A +   D ++E+ GE+  + +H + +  ++
Sbjct: 31 KKGVYMTDITPQGVAMR-AGVLADDHLIEVNGENVEDASHEEVVEKVK 77

>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 106

 Score = 42.4 bits (100), Expect = 5e-06
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
           P G+A   G +L  D ++ V+G +V D S EEV   +K  
Sbjct: 40 TPQGVAMRAG-VLADDHLIEVNGENVEDASHEEVVEKVKKS 79

>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A Length = 91

 Score = 43.0 bits (102), Expect = 2e-06
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
          K G  +  + P   A K A L  GD+++E+ GE+    TH + ++ +R
Sbjct: 26 KLGQYIRLVEPGSPAEK-AGLLAGDRLVEVNGENVEKETHQQVVSRIR 72

>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A Length = 91

 Score = 41.5 bits (98), Expect = 7e-06
 Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 2  RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
             PG  A   G LL GD+++ V+G +V  ++ ++V + ++  
Sbjct: 33 LVEPGSPAEKAG-LLAGDRLVEVNGENVEKETHQQVVSRIRAA 74

>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 91

 Score = 42.8 bits (101), Expect = 2e-06
 Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 1/48 (2%)

Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
           G +++  I   G  A+   L  GD I E+ G+   +         LR
Sbjct: 28 GGELVIARILHGGMVAQQGLLHVGDIIKEVNGQPVGS-DPRALQELLR 74

>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 91

 Score = 40.5 bits (95), Expect = 2e-05
 Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 2  RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
          R + GG+ A  G L  GD I  V+G  V       +  +++ 
Sbjct: 35 RILHGGMVAQQGLLHVGDIIKEVNGQPVG-SDPRALQELLRN 75

>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A Length = 90

 Score = 42.7 bits (101), Expect = 3e-06
 Identities = 11/48 (22%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
          + G  +  + P   AA+ + L+  D+++E+ G++   + HA+ +A ++
Sbjct: 27 RPGQYIRSVDPGSPAAR-SGLRAQDRLIEVNGQNVEGLRHAEVVASIK 73

>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A Length = 90

 Score = 40.3 bits (95), Expect = 2e-05
 Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
           PG  AA  G L   D+++ V+G +V      EV   +K  
Sbjct: 36 DPGSPAARSG-LRAQDRLIEVNGQNVEGLRHAEVVASIKAR 75

>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1 Length = 91

 Score = 42.0 bits (99), Expect = 5e-06
 Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 6/68 (8%)

Query: 44  GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK-----PC 98
            + V  +   G A + A L+  D +L+L      +    +    +R  P++         
Sbjct: 25  PVRVQAVDSGGPAER-AGLQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVWRMV 83

Query: 99  PTVPSEPN 106
           P V   P+
Sbjct: 84  PQVKPGPD 91

>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1 Length = 91

 Score = 41.6 bits (98), Expect = 7e-06
 Identities = 9/41 (21%), Positives = 17/41 (41%), Gaps = 1/41 (2%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
            GG A   G L + D ++ ++   V      E+A  ++  
Sbjct: 32 DSGGPAERAG-LQQLDTVLQLNERPVEHWKCVELAHEIRSC 71

>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A Length = 195

 Score = 43.8 bits (102), Expect = 5e-06
 Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 2/73 (2%)

Query: 44  GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKPCPTVPS 103
           GI V  + PEG A     L+ GD+I++  G  F NI H +A++ L+      +       
Sbjct: 25  GIFVTRVQPEGPA--SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVREV 82

Query: 104 EPNANATTGEKTT 116
              A      +  
Sbjct: 83  GNGAKQEIRVRVE 95

>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens} Length = 83

 Score = 41.8 bits (99), Expect = 5e-06
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
          + G  A   G L  GDQI++V+  +V+  S E+V  ++   
Sbjct: 31 MRGSPADFVG-LRAGDQILAVNEINVKKASHEDVVKLIGKC 70

>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens} Length = 83

 Score = 40.7 bits (96), Expect = 1e-05
 Identities = 8/46 (17%), Positives = 18/46 (39%), Gaps = 1/46 (2%)

Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
            ++  +     A     L+ GDQIL +   + +  +H   +  + 
Sbjct: 24 PCVLSCVMRGSPADF-VGLRAGDQILAVNEINVKKASHEDVVKLIG 68

>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A Length = 93

 Score = 41.5 bits (98), Expect = 7e-06
 Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)

Query: 5  PGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
          PGG A   G + +GD+I+ V+GT V + S  EV  ++K G
Sbjct: 38 PGGAAMKAG-VKEGDRIIKVNGTMVTNSSHLEVVKLIKSG 76

>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A Length = 93

 Score = 41.5 bits (98), Expect = 8e-06
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 7/63 (11%)

Query: 44  GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHA------KAMAHLRLTPAKAKP 97
            +LV  + P GAA K A +K GD+I+++ G    N +H       K+ A++ LT   +  
Sbjct: 30  IVLVQSVRPGGAAMK-AGVKEGDRIIKVNGTMVTNSSHLEVVKLIKSGAYVALTLLGSSS 88

Query: 98  CPT 100
            P+
Sbjct: 89  GPS 91

>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1 Length = 100

 Score = 41.3 bits (97), Expect = 1e-05
 Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 1/40 (2%)

Query: 5  PGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
           GG A   G L + D ++ ++   V      E+A  ++  
Sbjct: 45 SGGPAERAG-LQQLDTVLQLNERPVEHWKCVELAHEIRSC 83

>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1 Length = 100

 Score = 40.5 bits (95), Expect = 2e-05
 Identities = 10/53 (18%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK 96
           + V  +   G A + A L+  D +L+L      +    +    +R  P++  
Sbjct: 37 PVRVQAVDSGGPAER-AGLQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEII 88

>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 102

 Score = 41.6 bits (98), Expect = 1e-05
 Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
          + G ++ DI P   A   A LK  D ++ + G+    + H   +  +R
Sbjct: 29 QKGQIIKDIEPGSPAEA-AGLKNNDLVVAVNGKSVEALDHDGVVEMIR 75

>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 102

 Score = 38.5 bits (90), Expect = 1e-04
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 5  PGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
          PG  A   G L   D +++V+G  V     + V  +++ G
Sbjct: 39 PGSPAEAAG-LKNNDLVVAVNGKSVEALDHDGVVEMIRKG 77

>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 96

 Score = 40.8 bits (96), Expect = 1e-05
 Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 3/52 (5%)

Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPA 93
            G  V  I           L  GD I+E+  ++ +N++H + +  L+  P 
Sbjct: 31 PTGQRVKQILDIQGCP---GLCEGDLIVEINQQNVQNLSHTEVVDILKDCPI 79

>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 96

 Score = 38.1 bits (89), Expect = 1e-04
 Identities = 10/33 (30%), Positives = 18/33 (54%)

Query: 12 DGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
             L +GD I+ ++  +V++ S  EV  I+K  
Sbjct: 45 CPGLCEGDLIVEINQQNVQNLSHTEVVDILKDC 77

>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A Length = 82

 Score = 40.4 bits (95), Expect = 2e-05
 Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 1/41 (2%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
          V    AA +G LL    I  ++G +V      ++A I+   
Sbjct: 31 VKDSSAARNG-LLTEHNICEINGQNVIGLKDSQIADILSTS 70

>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A Length = 91

 Score = 40.3 bits (95), Expect = 2e-05
 Identities = 10/48 (20%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
            G  + ++   G A   A L+  D I+E+ G +  +  + K +  ++
Sbjct: 26 LPGSFIKEVQKGGPADL-AGLEDEDVIIEVNGVNVLDEPYEKVVDRIQ 72

>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A Length = 91

 Score = 39.6 bits (93), Expect = 4e-05
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
            GG A   G L   D I+ V+G +V D+  E+V   ++  
Sbjct: 35 QKGGPADLAG-LEDEDVIIEVNGVNVLDEPYEKVVDRIQSS 74

>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens} Length = 96

 Score = 40.4 bits (95), Expect = 3e-05
 Identities = 12/56 (21%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 34 QEEVATIMKGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
          +EE     + G  + ++ P   A K A ++ GD+++ + GE    + H + ++ ++
Sbjct: 21 REEKGLDGRPGQFLWEVDPGLPAKK-AGMQAGDRLVAVAGESVEGLGHEETVSRIQ 75

>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens} Length = 96

 Score = 39.6 bits (93), Expect = 4e-05
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 5  PGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
          PG  A   G +  GD++++V G  V     EE  + ++G 
Sbjct: 39 PGLPAKKAG-MQAGDRLVAVAGESVEGLGHEETVSRIQGQ 77

>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A Length = 99

 Score = 40.5 bits (95), Expect = 3e-05
 Identities = 11/37 (29%), Positives = 19/37 (51%)

Query: 53 EGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
          +G+ A++A L+ GD I  + GE    + H   +  L 
Sbjct: 43 DGSPAQEAGLRAGDLITHINGESVLGLVHMDVVELLL 79

>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A Length = 99

 Score = 38.5 bits (90), Expect = 1e-04
 Identities = 10/43 (23%), Positives = 17/43 (39%)

Query: 2  RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
           +V  G  A +  L  GD I  ++G  V      +V  ++   
Sbjct: 39 WSVEDGSPAQEAGLRAGDLITHINGESVLGLVHMDVVELLLKS 81

>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} PDB: 3r69_A* Length = 95

 Score = 40.3 bits (95), Expect = 3e-05
 Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
          + G ++ DI P   A   A LK  D ++ + G+    + H   +  +R
Sbjct: 28 QKGQIIKDIEPGSPAEA-AGLKNNDLVVAVNGKSVEALDHDGVVEMIR 74

>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} PDB: 3r69_A* Length = 95

 Score = 38.4 bits (90), Expect = 1e-04
 Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
           PG  A   G L   D +++V+G  V     + V  +++ G
Sbjct: 37 EPGSPAEAAG-LKNNDLVVAVNGKSVEALDHDGVVEMIRKG 76

>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens} Length = 113

 Score = 39.8 bits (93), Expect = 5e-05
 Identities = 8/35 (22%), Positives = 17/35 (48%)

Query: 9  AATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
          +     L KGD I  +   +V++ +  +V  ++K 
Sbjct: 44 SQWCQGLQKGDIIKEIYHQNVQNLTHLQVVEVLKQ 78

>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens} Length = 113

 Score = 38.7 bits (90), Expect = 2e-04
 Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 4/74 (5%)

Query: 43  GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKPCPTV- 101
                  +     +     L+ GD I E+  ++ +N+TH + +  L+  P  A     + 
Sbjct: 31  DSPTGQKVKMILDSQWCQGLQKGDIIKEIYHQNVQNLTHLQVVEVLKQFPVGADVPLLIL 90

Query: 102 ---PSEPNANATTG 112
              P  P   A  G
Sbjct: 91  RGGPPSPTKTAKMG 104

>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 126

 Score = 39.9 bits (93), Expect = 7e-05
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 5   PGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
            GG A   G L  GD+I+ V+G  V  K+  +V  +++  
Sbjct: 70  EGGPAFEAG-LCTGDRIIKVNGESVIGKTYSQVIALIQNS 108

>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 126

 Score = 39.1 bits (91), Expect = 1e-04
 Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 42  KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
              I V  +   G A + A L  GD+I+++ GE     T+++ +A ++
Sbjct: 60  MDTIFVKQVKEGGPAFE-AGLCTGDRIIKVNGESVIGKTYSQVIALIQ 106

>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} Length = 106

 Score = 39.0 bits (91), Expect = 9e-05
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
            G L+  I     A K A L  GD++L + G       HA+ +  +R
Sbjct: 25 TDGHLIRVIEEGSPAEK-AGLLDGDRVLRINGVFVDKEEHAQVVELVR 71

>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} Length = 106

 Score = 36.6 bits (85), Expect = 7e-04
 Identities = 10/43 (23%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 2  RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
              G  A   G LL GD+++ ++G  V  +   +V  +++  
Sbjct: 32 VIEEGSPAEKAG-LLDGDRVLRINGVFVDKEEHAQVVELVRKS 73

>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114

 Score = 39.2 bits (91), Expect = 1e-04
 Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 10/70 (14%)

Query: 43  GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMA---------HLRLTPA 93
             + V+ +   G A+K   LK GD+ILE+       +  +              +R  P 
Sbjct: 44  RRLYVNSVKETGLASK-KGLKAGDEILEINNRAADALNSSMLKDFLSQPSLGLLVRTYPE 102

Query: 94  KAKPCPTVPS 103
             +   + PS
Sbjct: 103 LEEGVESGPS 112

>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114

 Score = 36.9 bits (85), Expect = 6e-04
 Identities = 7/39 (17%), Positives = 16/39 (41%), Gaps = 1/39 (2%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
             G+A+  G L  GD+I+ ++       +   +   + 
Sbjct: 52 KETGLASKKG-LKAGDEILEINNRAADALNSSMLKDFLS 89

>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus} Length = 114

 Score = 39.0 bits (91), Expect = 1e-04
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
            G L+  I     A K A L  GD++L + G       HA+ +  +R
Sbjct: 37 TDGHLIRVIEEGSPAEK-AGLLDGDRVLRINGVFVDKEEHAQVVELVR 83

>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus} Length = 114

 Score = 37.4 bits (87), Expect = 4e-04
 Identities = 10/43 (23%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 2  RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
              G  A   G LL GD+++ ++G  V  +   +V  +++  
Sbjct: 44 VIEEGSPAEKAG-LLDGDRVLRINGVFVDKEEHAQVVELVRKS 85

>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 90

 Score = 38.2 bits (89), Expect = 1e-04
 Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 2  RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
            + GGIA   G +  G +I+ ++G  V     E++  I+   
Sbjct: 37 SLMRGGIAERGG-VRVGHRIIEINGQSVVATPHEKIVHILSNA 78

>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A Length = 94

 Score = 38.4 bits (89), Expect = 1e-04
 Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 5/65 (7%)

Query: 42  KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKPCPTV 101
              + V+ +   G A+K   LK GD+ILE+       +  +     L     +      V
Sbjct: 34  IRRLYVNSVKETGLASKKG-LKAGDEILEINNRAADALNSSMLKDFLS----QPSLGLLV 88

Query: 102 PSEPN 106
            + P 
Sbjct: 89  RTYPE 93

>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens} Length = 104

 Score = 37.8 bits (88), Expect = 2e-04
 Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
            L+  I  +  A   A L+ GD +  + G      T+ + +  +R
Sbjct: 49 FTLICKIQEDSPAHC-AGLQAGDVLANINGVSTEGFTYKQVVDLIR 93

>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A* Length = 109

 Score = 37.9 bits (88), Expect = 2e-04
 Identities = 10/46 (21%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
             +  +   G A + A L+ GD ++E+ G++   + H + +  +R
Sbjct: 46 LQYLESVDEGGVAWR-AGLRMGDFLIEVNGQNVVKVGHRQVVNMIR 90

>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A Length = 96

 Score = 37.7 bits (88), Expect = 2e-04
 Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 1/46 (2%)

Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
             V  ++    A   A L  GD I  + G +   I H + +  ++
Sbjct: 38 VTFVARVHESSPAQL-AGLTPGDTIASVNGLNVEGIRHREIVDIIK 82

>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A Length = 96

 Score = 36.6 bits (85), Expect = 6e-04
 Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 1/40 (2%)

Query: 5  PGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
              A   G L  GD I SV+G +V      E+  I+K  
Sbjct: 46 ESSPAQLAG-LTPGDTIASVNGLNVEGIRHREIVDIIKAS 84

>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus} Length = 132

 Score = 38.4 bits (89), Expect = 3e-04
 Identities = 10/46 (21%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 44  GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
              +  +   G A + A L+ GD ++E+ G++   + H + +  +R
Sbjct: 66  LQYLESVDEGGVAWR-AGLRMGDFLIEVNGQNVVKVGHRQVVNMIR 110

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	175
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	99.89
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	99.88
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	99.87
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	99.78
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	99.78
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	99.77
3rle_A	209	Golgi reassembly-stacking protein 2; PDZ, tether,	99.7
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	99.7
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	99.69
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	99.63
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	99.62
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	99.62
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	99.61
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	99.54
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	99.54
4amh_A	106	Disks large homolog 1; permutation, protein foldin	99.5
3gge_A	95	PDZ domain-containing protein GIPC2; structural ge	99.48
1r6j_A	82	Syntenin 1; PDZ, membrane protein; 0.73A {Homo sap	99.46
3e17_A	88	Tight junction protein ZO-2; domain swapping, alte	99.44
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	99.43
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	99.41
3cbz_A	108	Dishevelled-2; PDZ domain, phage derived high affi	99.41
3b76_A	118	E3 ubiquitin-protein ligase LNX; PDZ, bound ligand	99.41
1ujd_A	117	KIAA0559 protein; PDZ domain, structural genomics,	99.4
1wi4_A	109	Synip, syntaxin binding protein 4; syntaxin4-inter	99.39
2la8_A	106	Inactivation-NO-after-potential D protein, KON-TI	99.38
2qg1_A	92	Multiple PDZ domain protein; MPDZ, MUPP1, structur	99.38
2qkv_A	96	Inactivation-NO-after-potential D protein; PDZ dom	99.37
2vwr_A	95	Ligand of NUMB protein X 2; protein-binding, metal	99.37
2d92_A	108	INAD-like protein; PDZ domain, inadl protein, hina	99.37
1wg6_A	127	Hypothetical protein (riken cDNA 2810455B10); stru	99.36
2byg_A	117	Channel associated protein of synapse-110; DLG2, P	99.36
3egg_C	170	Spinophilin; PP1, serine/threonine phosphatase, po	99.36
3o46_A	93	Maguk P55 subfamily member 7; PDZ domain, structur	99.36
1wf8_A	107	Neurabin-I; PDZ domain, structural genomics, NPPSF	99.36
1wfg_A	131	Regulating synaptic membrane exocytosis protein 2;	99.36
1d5g_A	96	Human phosphatase HPTP1E; protein-peptide complex,	99.36
2fne_A	117	Multiple PDZ domain protein; structural protein, s	99.35
1i16_A	130	Interleukin 16, LCF; cytokine, lymphocyte chemoatt	99.35
1v62_A	117	KIAA1719 protein; structural genomics, synaptic tr	99.35
2pa1_A	87	PDZ and LIM domain protein 2; PDZ domain, structur	99.34
2awx_A	105	Synapse associated protein 97; membrane protein, s	99.34
2iwo_A	120	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	99.34
1kwa_A	88	Hcask/LIN-2 protein; PDZ domain, neurexin, syndeca	99.34
3axa_A	106	Afadin, nectin-3, protein AF-6; PDZ domain, fusion	99.34
1uhp_A	107	Hypothetical protein KIAA1095; PDZ domain, semapho	99.34
2i1n_A	102	Discs, large homolog 3; DLG3, PDZ, PDZ domain, sig	99.34
2g5m_B	113	Neurabin-2; spinophilin, PDZ domain, CNS, synaptic	99.34
1rgw_A	85	ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK,	99.33
2q3g_A	89	PDZ and LIM domain protein 7; structural genomics,	99.33
2ehr_A	117	INAD-like protein; PDZ domain, inadl protein, hina	99.33
1uep_A	103	Membrane associated guanylate kinase inverted-2 (M	99.33
2fe5_A	94	Presynaptic protein SAP102; PDZ domain, DLG3, huma	99.33
2ejy_A	97	55 kDa erythrocyte membrane protein; GPC, maguk, P	99.33
2jil_A	97	GRIP1 protein, glutamate receptor interacting prot	99.33
2he4_A	90	Na(+)/H(+) exchange regulatory cofactor NHE-RF2; p	99.33
2uzc_A	88	Human pdlim5, PDZ and LIM domain 5; metal-binding,	99.33
1wha_A	105	KIAA0147 protein, scribble; PDZ domain, cellular s	99.33
2jik_A	101	Synaptojanin-2 binding protein; transmembrane, out	99.32
2opg_A	98	Multiple PDZ domain protein; structural protein, s	99.32
2yt7_A	101	Amyloid beta A4 precursor protein-binding family A	99.32
1n7e_A	97	AMPA receptor interacting protein GRIP; PDZ, prote	99.32
2i04_A	85	Membrane-associated guanylate kinase, WW and PDZ d	99.32
2fcf_A	103	Multiple PDZ domain protein; adaptor molecule, pro	99.31
3l4f_D	132	SH3 and multiple ankyrin repeat domains protein 1;	99.31
1ihj_A	98	INAD; intermolecular disulfide bond, PDZ domain, s	99.31
2f5y_A	91	Regulator of G-protein signalling 3 isoform 1; PDZ	99.31
1m5z_A	91	GRIP, AMPA receptor interacting protein; six beta-	99.31
1nf3_C	128	PAR-6B; semi-CRIB motif, switch I and II, PDZ doma	99.31
2db5_A	128	INAD-like protein; PDZ domain, hinadl, PALS1- asso	99.31
2kv8_A	83	RGS12, regulator of G-protein signaling 12; PDZ do	99.3
2iwq_A	123	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	99.3
3khf_A	99	Microtubule-associated serine/threonine-protein ki	99.3
1qav_A	90	Alpha-1 syntrophin (residues 77-171); beta-finger,	99.3
3nfk_A	107	Tyrosine-protein phosphatase non-receptor type 4;	99.3
3hpk_A	125	Protein interacting with PRKCA 1; oxidized, PDZ do	99.3
2pkt_A	91	PDZ and LIM domain protein 1; PDZ domain, structur	99.3
2v90_A	96	PDZ domain-containing protein 3; membrane, protein	99.3
2q9v_A	90	Membrane-associated guanylate kinase, WW and PDZ c	99.3
4e34_A	87	Golgi-associated PDZ and coiled-coil motif-contai	99.3
1q7x_A	108	PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, str	99.3
2dc2_A	103	GOPC, golgi associated PDZ and coiled-coil motif c	99.3
1um1_A	110	KIAA1849 protein, RSGI RUH-007; PDZ domain, human	99.29
2daz_A	124	INAD-like protein; PDZ domain, inadl protein, hina	99.29
2o2t_A	117	Multiple PDZ domain protein; structural protein, s	99.29
2djt_A	104	Unnamed protein product; PDZ domain, structural ge	99.29
2r4h_A	112	Membrane-associated guanylate kinase, WW and PDZ c	99.28
1ueq_A	123	Membrane associated guanylate kinase inverted-2 (M	99.28
1mfg_A	95	ERB-B2 interacting protein; PDZ domain, protein-pe	99.28
2dlu_A	111	INAD-like protein; PDZ domain, inadl protein, hina	99.28
2eno_A	120	Synaptojanin-2-binding protein; mitochondrial oute	99.28
2dkr_A	93	LIN-7 homolog B; LIN-7B, PDZ, structural genomics,	99.28
2e7k_A	91	Maguk P55 subfamily member 2; PDZ domain, MPP2 pro	99.28
2kpk_A	129	Membrane-associated guanylate kinase, WW and PDZ c	99.28
2ego_A	96	General receptor for phosphoinositides 1- associat	99.27
3i4w_A	104	Disks large homolog 4; alpha and beta protein, alt	99.27
3cyy_A	92	Tight junction protein ZO-1; protein-ligand comple	99.27
1ufx_A	103	KIAA1526 protein; PDZ domain, structural genomics,	99.27
2jre_A	108	C60-1 PDZ domain peptide; de novo protein; NMR {Sy	99.27
1wi2_A	104	Riken cDNA 2700099C19; structural genomics, riken	99.27
2eeg_A	94	PDZ and LIM domain protein 4; PDZ domain, structur	99.27
3r68_A	95	Na(+)/H(+) exchange regulatory cofactor NHE-RF3; P	99.27
1uju_A	111	Scribble; PDZ domain, cellular signaling, structur	99.27
1q3o_A	109	Shank1; PDZ, GKAP, peptide binding protein; 1.80A	99.26
3sfj_A	104	TAX1-binding protein 3; PDZ:peptide complex, signa	99.26
3qe1_A	107	Sorting nexin-27, G protein-activated inward RECT	99.26
2dm8_A	116	INAD-like protein; PDZ domain, inadl protein, hina	99.26
2koj_A	111	Partitioning defective 3 homolog; PDZ domain, stru	99.26
1vb7_A	94	PDZ and LIM domain 2; PDZ domain PDZ-LIM protein,	99.26
2dls_A	93	PDZ-rhogef, RHO guanine nucleotide exchange factor	99.26
1g9o_A	91	NHE-RF; PDZ domain, complex, signaling protein; 1.	99.26
2vsp_A	91	PDZ domain-containing protein 1; membrane, cytopla	99.26
3ngh_A	106	PDZ domain-containing protein 1; adaptor protein,	99.26
2w4f_A	97	Protein LAP4; structural protein, phosphoprotein,	99.25
2rcz_A	81	Tight junction protein ZO-1; PDZ, domain-swapping,	99.25
1v6b_A	118	Harmonin isoform A1; structural genomics, usher sy	99.25
1va8_A	113	Maguk P55 subfamily member 5; PDZ domain, palmitoy	99.25
2dmz_A	129	INAD-like protein; PDZ domain, inadl protein, hina	99.24
1x6d_A	119	Interleukin-16; PDZ domain, lymphocyte chemoattrac	99.24
2d90_A	102	PDZ domain containing protein 1; structural genomi	99.24
1x5q_A	110	LAP4 protein; PDZ domain, scribble homolog protein	99.24
1uew_A	114	Membrane associated guanylate kinase inverted-2 (M	99.23
1wfv_A	103	Membrane associated guanylate kinase inverted-2; a	99.23
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	99.23
1y7n_A	90	Amyloid beta A4 precursor protein-binding family A	99.23
2eeh_A	100	PDZ domain-containing protein 7; structural genomi	99.23
1n7t_A	103	99-MER peptide of densin-180-like protein; PDZ dom	99.23
2iwn_A	97	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	99.23
2jxo_A	98	Ezrin-radixin-moesin-binding phosphoprotein 50; nh	99.22
1whd_A	100	RGS3, regulator of G-protein signaling 3; PDZ doma	99.22
2edz_A	114	PDZ domain-containing protein 1; CFTR-associated p	99.22
2kom_A	121	Partitioning defective 3 homolog; PAR-3B, PDZ doma	99.22
2cs5_A	119	Tyrosine-protein phosphatase, non-receptor type 4;	99.22
2vsv_A	109	Rhophilin-2; scaffold protein, RHO GTPase binding,	99.22
1wf7_A	103	Enigma homologue protein; PDZ domain, structural g	99.22
1wif_A	126	RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, s	99.21
2edv_A	96	FERM and PDZ domain-containing protein 1; cytoskel	99.2
2vz5_A	139	TAX1-binding protein 3; WNT signaling pathway, pro	99.2
1v5l_A	103	PDZ and LIM domain 3; actinin alpha 2 associated L	99.2
2qbw_A	195	PDZ-fibronectin fusion protein; fibronectin PDZ, u	99.19
3rle_A	209	Golgi reassembly-stacking protein 2; PDZ, tether,	99.19
2eei_A	106	PDZ domain-containing protein 1; regulatory factor	99.19
3tsv_A	124	Tight junction protein ZO-1; PDZ, scaffolding, JAM	99.18
2edp_A	100	Fragment, shroom family member 4; APX/shroom famil	99.17
1v5q_A	122	GRIP1 homolog, glutamate receptor interacting prot	99.17
2csj_A	117	TJP2 protein; PDZ domain, structural genomics, NPP	99.17
1tp5_A	119	Presynaptic density protein 95; PDZ-peptide ligand	99.17
2yuy_A	126	RHO GTPase activating protein 21; PDZ domain, stru	99.17
1qau_A	112	Neuronal nitric oxide synthase (residues 1-130); b	99.17
1uit_A	117	Human discs large 5 protein; PDZ domain, HDLG5, ma	99.16
2gzv_A	114	PRKCA-binding protein; protein kinase C, PDZ domai	99.16
2h2b_A	107	Tight junction protein ZO-1; PDZ domain, phage der	99.16
1z87_A	263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	99.14
2eaq_A	90	LIM domain only protein 7; conserved hypothetical	99.14
3bpu_A	88	Membrane-associated guanylate kinase, WW and PDZ c	99.13
3kzd_A	94	TIAM-1, T-lymphoma invasion and metastasis-inducin	99.13
1uez_A	101	KIAA1526 protein; PDZ domain, structural genomics,	99.12
3k1r_A	192	Harmonin; protein-protein complex, alternative spl	99.12
2z17_A	104	Pleckstrin homology SEC7 and coiled-coil domains-	99.11
1r6j_A	82	Syntenin 1; PDZ, membrane protein; 0.73A {Homo sap	99.11
2d8i_A	114	T-cell lymphoma invasion and metastasis 1 variant;	99.11
2pzd_A	113	Serine protease HTRA2; PDZ domain, apoptosis, mito	99.11
1um7_A	113	Synapse-associated protein 102; PDZ, discs large h	99.1
3soe_A	113	Membrane-associated guanylate kinase, WW and PDZ c	99.09
1ujv_A	96	Membrane associated guanylate kinase inverted-2 (M	99.08
1uf1_A	128	KIAA1526 protein; PDZ domain, structural genomics,	99.08
2kjp_A	91	Uncharacterized protein YLBL; mixed alpha-beta pro	99.08
1vae_A	111	Rhophilin 2, rhophilin, RHO GTPase binding protein	99.07
2yub_A	118	LIMK-2, LIM domain kinase 2; PDZ domain, structura	99.07
2kjd_A	128	Sodium/hydrogen exchange regulatory cofactor NHE-	99.07
2p3w_A	112	Probable serine protease HTRA3; PDZ domain, phage	99.06
1x5n_A	114	Harmonin; PDZ domain, usher syndrome 1C protein, a	99.05
3qik_A	101	Phosphatidylinositol 3,4,5-trisphosphate-dependen	99.04
3i18_A	100	LMO2051 protein; alpha-beta protein, structural ge	99.04
3gge_A	95	PDZ domain-containing protein GIPC2; structural ge	99.03
1b8q_A	127	Protein (neuronal nitric oxide synthase); PDZ doma	99.03
2lob_A	112	Golgi-associated PDZ and coiled-coil motif-contai	98.59
1wh1_A	124	KIAA1095 protein; PDZ domain, structural genomics,	99.02
4fln_A	539	Protease DO-like 2, chloroplastic; protease, DEG,	99.01
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	98.99
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	98.97
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	98.95
3e17_A	88	Tight junction protein ZO-2; domain swapping, alte	98.94
3cbz_A	108	Dishevelled-2; PDZ domain, phage derived high affi	98.92
2kl1_A	94	YLBL protein; structure genomics, structural genom	98.88
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	98.88
1wi4_A	109	Synip, syntaxin binding protein 4; syntaxin4-inter	98.87
2l97_A	134	HTRA, putative serine protease; HTRA-PDZ, protein	98.87
1ufx_A	103	KIAA1526 protein; PDZ domain, structural genomics,	98.86
3id1_A	95	Regulator of sigma E protease; hydrolase, cell inn	98.85
3o46_A	93	Maguk P55 subfamily member 7; PDZ domain, structur	98.85
2i04_A	85	Membrane-associated guanylate kinase, WW and PDZ d	98.84
2kv8_A	83	RGS12, regulator of G-protein signaling 12; PDZ do	98.84
2zpm_A	91	Regulator of sigma E protease; metalloproteinase,	98.84
3b76_A	118	E3 ubiquitin-protein ligase LNX; PDZ, bound ligand	98.83
2d92_A	108	INAD-like protein; PDZ domain, inadl protein, hina	98.83
2q9v_A	90	Membrane-associated guanylate kinase, WW and PDZ c	98.83
1uep_A	103	Membrane associated guanylate kinase inverted-2 (M	98.83
1kwa_A	88	Hcask/LIN-2 protein; PDZ domain, neurexin, syndeca	98.82
1wg6_A	127	Hypothetical protein (riken cDNA 2810455B10); stru	98.82
2ejy_A	97	55 kDa erythrocyte membrane protein; GPC, maguk, P	98.81
3r68_A	95	Na(+)/H(+) exchange regulatory cofactor NHE-RF3; P	98.81
3nfk_A	107	Tyrosine-protein phosphatase non-receptor type 4;	98.81
1v6b_A	118	Harmonin isoform A1; structural genomics, usher sy	98.81
4amh_A	106	Disks large homolog 1; permutation, protein foldin	98.8
1wfg_A	131	Regulating synaptic membrane exocytosis protein 2;	98.8
1ujd_A	117	KIAA0559 protein; PDZ domain, structural genomics,	98.8
2krg_A	216	Na(+)/H(+) exchange regulatory cofactor NHE-RF1; a	98.8
2i6v_A	87	General secretion pathway protein C; EPSC, GSPC, P	98.79
2iwo_A	120	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	98.79
2f5y_A	91	Regulator of G-protein signalling 3 isoform 1; PDZ	98.78
1g9o_A	91	NHE-RF; PDZ domain, complex, signaling protein; 1.	98.78
1d5g_A	96	Human phosphatase HPTP1E; protein-peptide complex,	98.78
2uzc_A	88	Human pdlim5, PDZ and LIM domain 5; metal-binding,	98.78
2byg_A	117	Channel associated protein of synapse-110; DLG2, P	98.78
1i16_A	130	Interleukin 16, LCF; cytokine, lymphocyte chemoatt	98.78
2la8_A	106	Inactivation-NO-after-potential D protein, KON-TI	98.78
2he4_A	90	Na(+)/H(+) exchange regulatory cofactor NHE-RF2; p	98.77
1y7n_A	90	Amyloid beta A4 precursor protein-binding family A	98.77
2vsp_A	91	PDZ domain-containing protein 1; membrane, cytopla	98.77
2vwr_A	95	Ligand of NUMB protein X 2; protein-binding, metal	98.77
2qg1_A	92	Multiple PDZ domain protein; MPDZ, MUPP1, structur	98.77
2pa1_A	87	PDZ and LIM domain protein 2; PDZ domain, structur	98.77
1n7e_A	97	AMPA receptor interacting protein GRIP; PDZ, prote	98.77
1rgw_A	85	ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK,	98.76
3hpk_A	125	Protein interacting with PRKCA 1; oxidized, PDZ do	98.76
2qkv_A	96	Inactivation-NO-after-potential D protein; PDZ dom	98.76
2djt_A	104	Unnamed protein product; PDZ domain, structural ge	98.76
2jil_A	97	GRIP1 protein, glutamate receptor interacting prot	98.76
3kzd_A	94	TIAM-1, T-lymphoma invasion and metastasis-inducin	98.76
2q3g_A	89	PDZ and LIM domain protein 7; structural genomics,	98.76
2pkt_A	91	PDZ and LIM domain protein 1; PDZ domain, structur	98.76
2opg_A	98	Multiple PDZ domain protein; structural protein, s	98.75
2ego_A	96	General receptor for phosphoinositides 1- associat	98.75
2fne_A	117	Multiple PDZ domain protein; structural protein, s	98.75
4e34_A	87	Golgi-associated PDZ and coiled-coil motif-contai	98.75
1whd_A	100	RGS3, regulator of G-protein signaling 3; PDZ doma	98.75
2fe5_A	94	Presynaptic protein SAP102; PDZ domain, DLG3, huma	98.75
1wfv_A	103	Membrane associated guanylate kinase inverted-2; a	98.75
2jik_A	101	Synaptojanin-2 binding protein; transmembrane, out	98.75
2vsv_A	109	Rhophilin-2; scaffold protein, RHO GTPase binding,	98.75
1v62_A	117	KIAA1719 protein; structural genomics, synaptic tr	98.75
1vb7_A	94	PDZ and LIM domain 2; PDZ domain PDZ-LIM protein,	98.73
2i1n_A	102	Discs, large homolog 3; DLG3, PDZ, PDZ domain, sig	98.73
2kpk_A	129	Membrane-associated guanylate kinase, WW and PDZ c	98.73
2dc2_A	103	GOPC, golgi associated PDZ and coiled-coil motif c	98.73
2eeg_A	94	PDZ and LIM domain protein 4; PDZ domain, structur	98.73
3ngh_A	106	PDZ domain-containing protein 1; adaptor protein,	98.73
2koj_A	111	Partitioning defective 3 homolog; PDZ domain, stru	98.73
2dm8_A	116	INAD-like protein; PDZ domain, inadl protein, hina	98.73
3axa_A	106	Afadin, nectin-3, protein AF-6; PDZ domain, fusion	98.73
2g5m_B	113	Neurabin-2; spinophilin, PDZ domain, CNS, synaptic	98.73
2awx_A	105	Synapse associated protein 97; membrane protein, s	98.73
1ihj_A	98	INAD; intermolecular disulfide bond, PDZ domain, s	98.72
1wf8_A	107	Neurabin-I; PDZ domain, structural genomics, NPPSF	98.72
1m5z_A	91	GRIP, AMPA receptor interacting protein; six beta-	98.72
1wi2_A	104	Riken cDNA 2700099C19; structural genomics, riken	98.72
2fcf_A	103	Multiple PDZ domain protein; adaptor molecule, pro	98.72
1q3o_A	109	Shank1; PDZ, GKAP, peptide binding protein; 1.80A	98.72
1wif_A	126	RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, s	98.72
3l4f_D	132	SH3 and multiple ankyrin repeat domains protein 1;	98.72
3stj_A	345	Protease DEGQ; serine protease, PDZ domain, protea	98.71
1wha_A	105	KIAA0147 protein, scribble; PDZ domain, cellular s	98.71
2o2t_A	117	Multiple PDZ domain protein; structural protein, s	98.71
2jxo_A	98	Ezrin-radixin-moesin-binding phosphoprotein 50; nh	98.71
2jre_A	108	C60-1 PDZ domain peptide; de novo protein; NMR {Sy	98.71
2db5_A	128	INAD-like protein; PDZ domain, hinadl, PALS1- asso	98.71
2yt7_A	101	Amyloid beta A4 precursor protein-binding family A	98.71
1ueq_A	123	Membrane associated guanylate kinase inverted-2 (M	98.71
1fc6_A	388	Photosystem II D1 protease; D1 C-terminal processi	98.71
2dls_A	93	PDZ-rhogef, RHO guanine nucleotide exchange factor	98.71
2dkr_A	93	LIN-7 homolog B; LIN-7B, PDZ, structural genomics,	98.7
2v90_A	96	PDZ domain-containing protein 3; membrane, protein	98.7
2dlu_A	111	INAD-like protein; PDZ domain, inadl protein, hina	98.7
3khf_A	99	Microtubule-associated serine/threonine-protein ki	98.7
2e7k_A	91	Maguk P55 subfamily member 2; PDZ domain, MPP2 pro	98.7
1qav_A	90	Alpha-1 syntrophin (residues 77-171); beta-finger,	98.7
2ehr_A	117	INAD-like protein; PDZ domain, inadl protein, hina	98.69
3i4w_A	104	Disks large homolog 4; alpha and beta protein, alt	98.69
2eno_A	120	Synaptojanin-2-binding protein; mitochondrial oute	98.69
2iwq_A	123	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	98.69
1x6d_A	119	Interleukin-16; PDZ domain, lymphocyte chemoattrac	98.69
3qe1_A	107	Sorting nexin-27, G protein-activated inward RECT	98.69
1wf7_A	103	Enigma homologue protein; PDZ domain, structural g	98.68
1uhp_A	107	Hypothetical protein KIAA1095; PDZ domain, semapho	98.68
2r4h_A	112	Membrane-associated guanylate kinase, WW and PDZ c	98.68
3sfj_A	104	TAX1-binding protein 3; PDZ:peptide complex, signa	98.68
1nf3_C	128	PAR-6B; semi-CRIB motif, switch I and II, PDZ doma	98.67
1te0_A	318	Protease DEGS; two domains, serine protease, PDZ,	98.67
2kom_A	121	Partitioning defective 3 homolog; PAR-3B, PDZ doma	98.67
2eei_A	106	PDZ domain-containing protein 1; regulatory factor	98.67
1um1_A	110	KIAA1849 protein, RSGI RUH-007; PDZ domain, human	98.66
1v5l_A	103	PDZ and LIM domain 3; actinin alpha 2 associated L	98.66
2daz_A	124	INAD-like protein; PDZ domain, inadl protein, hina	98.66
2hga_A	125	Conserved protein MTH1368; GFT structural genomics	98.65
2cs5_A	119	Tyrosine-protein phosphatase, non-receptor type 4;	98.65
2d90_A	102	PDZ domain containing protein 1; structural genomi	98.65
2iwn_A	97	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	98.65
2edz_A	114	PDZ domain-containing protein 1; CFTR-associated p	98.64
2rcz_A	81	Tight junction protein ZO-1; PDZ, domain-swapping,	98.64
3qik_A	101	Phosphatidylinositol 3,4,5-trisphosphate-dependen	98.64
1q7x_A	108	PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, str	98.64
3cyy_A	92	Tight junction protein ZO-1; protein-ligand comple	98.63
3tsv_A	124	Tight junction protein ZO-1; PDZ, scaffolding, JAM	98.63
1va8_A	113	Maguk P55 subfamily member 5; PDZ domain, palmitoy	98.63
2eeh_A	100	PDZ domain-containing protein 7; structural genomi	98.63
2i4s_A	105	General secretion pathway protein C; EPSC, GSPC, P	98.63
2dmz_A	129	INAD-like protein; PDZ domain, inadl protein, hina	98.62
1lcy_A	325	HTRA2 serine protease; apoptosis, PDZ domain, casp	98.61
1uju_A	111	Scribble; PDZ domain, cellular signaling, structur	98.61
1n7t_A	103	99-MER peptide of densin-180-like protein; PDZ dom	98.6
2gzv_A	114	PRKCA-binding protein; protein kinase C, PDZ domai	98.6
2z17_A	104	Pleckstrin homology SEC7 and coiled-coil domains-	98.6
1uez_A	101	KIAA1526 protein; PDZ domain, structural genomics,	98.6
2eaq_A	90	LIM domain only protein 7; conserved hypothetical	98.6
2w4f_A	97	Protein LAP4; structural protein, phosphoprotein,	98.6
1um7_A	113	Synapse-associated protein 102; PDZ, discs large h	98.6
2yuy_A	126	RHO GTPase activating protein 21; PDZ domain, stru	98.6
1vae_A	111	Rhophilin 2, rhophilin, RHO GTPase binding protein	98.59
2d8i_A	114	T-cell lymphoma invasion and metastasis 1 variant;	98.59
1mfg_A	95	ERB-B2 interacting protein; PDZ domain, protein-pe	98.59
1v5q_A	122	GRIP1 homolog, glutamate receptor interacting prot	98.59
1tp5_A	119	Presynaptic density protein 95; PDZ-peptide ligand	98.58
1uew_A	114	Membrane associated guanylate kinase inverted-2 (M	98.58
2vz5_A	139	TAX1-binding protein 3; WNT signaling pathway, pro	98.57
1uf1_A	128	KIAA1526 protein; PDZ domain, structural genomics,	98.56
2edp_A	100	Fragment, shroom family member 4; APX/shroom famil	98.55
1y8t_A	324	Hypothetical protein RV0983; serine protease, stru	98.55
1x5q_A	110	LAP4 protein; PDZ domain, scribble homolog protein	98.54
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	98.53
2edv_A	96	FERM and PDZ domain-containing protein 1; cytoskel	98.52
3bpu_A	88	Membrane-associated guanylate kinase, WW and PDZ c	98.52
1uit_A	117	Human discs large 5 protein; PDZ domain, HDLG5, ma	98.5
1x5n_A	114	Harmonin; PDZ domain, usher syndrome 1C protein, a	98.49
3k1r_A	192	Harmonin; protein-protein complex, alternative spl	98.48
2kjd_A	128	Sodium/hydrogen exchange regulatory cofactor NHE-	98.47
1z87_A	263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	98.47
1qau_A	112	Neuronal nitric oxide synthase (residues 1-130); b	98.46
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	98.46
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	98.46
3qo6_A	348	Protease DO-like 1, chloroplastic; protease, HTRA,	98.45
2h2b_A	107	Tight junction protein ZO-1; PDZ domain, phage der	98.42
2lob_A	112	Golgi-associated PDZ and coiled-coil motif-contai	97.78
4fgm_A	597	Aminopeptidase N family protein; structural genomi	98.41
2csj_A	117	TJP2 protein; PDZ domain, structural genomics, NPP	98.4
2yub_A	118	LIMK-2, LIM domain kinase 2; PDZ domain, structura	98.39
2qbw_A	195	PDZ-fibronectin fusion protein; fibronectin PDZ, u	98.39
3soe_A	113	Membrane-associated guanylate kinase, WW and PDZ c	98.34
1b8q_A	127	Protein (neuronal nitric oxide synthase); PDZ doma	98.33
1wh1_A	124	KIAA1095 protein; PDZ domain, structural genomics,	98.29
3num_A	332	Serine protease HTRA1; DEGP, hydrolase; 2.75A {Hom	98.28
1ujv_A	96	Membrane associated guanylate kinase inverted-2 (M	98.28
3k50_A	403	Putative S41 protease; structural genomics, joint	98.27
3id1_A	95	Regulator of sigma E protease; hydrolase, cell inn	98.24
2kjp_A	91	Uncharacterized protein YLBL; mixed alpha-beta pro	98.23
2zpm_A	91	Regulator of sigma E protease; metalloproteinase,	98.22
4fln_A	539	Protease DO-like 2, chloroplastic; protease, DEG,	98.22
2krg_A	216	Na(+)/H(+) exchange regulatory cofactor NHE-RF1; a	98.12
2kl1_A	94	YLBL protein; structure genomics, structural genom	98.11
2pzd_A	113	Serine protease HTRA2; PDZ domain, apoptosis, mito	98.05
2i6v_A	87	General secretion pathway protein C; EPSC, GSPC, P	98.02
3i18_A	100	LMO2051 protein; alpha-beta protein, structural ge	98.0
2l97_A	134	HTRA, putative serine protease; HTRA-PDZ, protein	97.93
2p3w_A	112	Probable serine protease HTRA3; PDZ domain, phage	97.93
2i4s_A	105	General secretion pathway protein C; EPSC, GSPC, P	97.91
1fc6_A	388	Photosystem II D1 protease; D1 C-terminal processi	97.84
1k32_A	1045	Tricorn protease; protein degradation, substrate g	97.77
3k50_A	403	Putative S41 protease; structural genomics, joint	97.56
2hga_A	125	Conserved protein MTH1368; GFT structural genomics	97.56
1te0_A	318	Protease DEGS; two domains, serine protease, PDZ,	97.53
1y8t_A	324	Hypothetical protein RV0983; serine protease, stru	97.46
1lcy_A	325	HTRA2 serine protease; apoptosis, PDZ domain, casp	97.46
3stj_A	345	Protease DEGQ; serine protease, PDZ domain, protea	97.45
3num_A	332	Serine protease HTRA1; DEGP, hydrolase; 2.75A {Hom	97.18
3qo6_A	348	Protease DO-like 1, chloroplastic; protease, HTRA,	97.15
4fgm_A	597	Aminopeptidase N family protein; structural genomi	97.09
1k32_A	1045	Tricorn protease; protein degradation, substrate g	95.46
3egg_C	170	Spinophilin; PP1, serine/threonine phosphatase, po	94.09

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=99.89  E-value=7.8e-22  Score=172.93  Aligned_cols=172  Identities=30%  Similarity=0.484  Sum_probs=118.8

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC--------------------------------------
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG--------------------------------------   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~--------------------------------------   43 (175)
                      +|.|||||+++|+|+.||+|++|||+++.+++|.+++.+++.                                      
T Consensus        95 ~v~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~g~~v~l~v~R~~~~~~~~~~v~l~k~~~~lG~~i~~~  174 (721)
T 2xkx_A           95 KIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKGPKGLGFSIAGG  174 (721)
T ss_pred             EeCCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHhhccccccceEEEecccccccceeeeeeeecCCCceeeccC
Confidence            578999999999999999999999999999999988877741                                      


Q ss_pred             ----------CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCCCCCCCCCC---------CC
Q psy1521          44 ----------GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKPCPTVP---------SE  104 (175)
Q Consensus        44 ----------gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~~~~~~~~~---------~~  104 (175)
                                |++|..|.++|+|+++|+|++||+|++|||+++.+++|.+++.++++.+..+++.....         ..
T Consensus       175 ~~~~~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~v~l~V~R~g~~~~~~~~~~  254 (721)
T 2xkx_A          175 VGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKVAKPSNAYLSDSYAP  254 (721)
T ss_pred             CCccccCCCCceEEEEeCCCCchhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHcCCCeEEEEEEeCCcccccCCCCC
Confidence                      46899999999999999999999999999999999999999999998776543211100         00


Q ss_pred             CCCCCCCCC--c---cc-ce--eeeeeeeeec---ccCC-----C-CCCCCCceEEEEEEeCCCCCcCEEEEcCcCCCce
Q psy1521         105 PNANATTGE--K---TT-FY--FHFQVKLVVL---RDTV-----T-KEDDLLEFVDVELTKKAGKGFGLSLVGRKQGPGV  167 (175)
Q Consensus       105 ~~~~~~~~~--~---~~-~~--~~~~v~l~v~---r~~~-----~-~~~~~~~~~~v~l~k~~~~~lGfsi~gg~~~~gi  167 (175)
                      |....+...  .   ++ .+  ..+...+...   +..+     . ........+.|+|.+. ..+|||++.++....|+
T Consensus       255 p~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~v~l~~~-~~~lG~~i~~~~~~~gv  333 (721)
T 2xkx_A          255 PDITTSYSQHLDNEISHSSYLGTDYPTAMTPTSPRRYSPVAKDLLGEEDIPREPRRIVIHRG-STGLGFNIVGGEDGEGI  333 (721)
T ss_pred             CCcccCCCCCcccccCCcccccccccccCCCCCCcccCCcccccccccccccceEEEEEEEC-CCCccEEEeccCCCCCe
Confidence            110000000  0   00 00  0000000000   0000     0 0011224688888864 47899999988777899


Q ss_pred             EEEeccC
Q psy1521         168 FISDLVS  174 (175)
Q Consensus       168 ~I~~i~~  174 (175)
                      ||..|.|
T Consensus       334 ~V~~V~~  340 (721)
T 2xkx_A          334 FISFILA  340 (721)
T ss_pred             EEEEeCC
Confidence            9999976

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A

Probab=99.88  E-value=4.8e-22  Score=147.97  Aligned_cols=93  Identities=38%  Similarity=0.586  Sum_probs=86.2

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC--------------------------------------
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG--------------------------------------   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~--------------------------------------   43 (175)
                      .|.|+|||+++|+|+.||+|++|||+++.++++.++..+++.                                      
T Consensus        41 ~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~r~~~~~~~~~~v~l~~~~~~lG~~~~~~  120 (196)
T 3gsl_A           41 KIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKGPKGLGFSIAGG  120 (196)
T ss_dssp             EECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTSCSEEEEEEEEECCCCEEEEEEEEEEBTTBSCEEEEES
T ss_pred             EECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEEEEecCCCccccEEEEEecCCCCceEEEEcc
Confidence            578999999999999999999999999999999888877641                                      


Q ss_pred             ----------CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          44 ----------GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        44 ----------gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                                |++|..|.++|+|+++|+|++||+|++|||+++.+++|.+++.+|++.+..
T Consensus       121 ~~~~~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~  181 (196)
T 3gsl_A          121 VGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDV  181 (196)
T ss_dssp             BTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCBHHHHHHHHHSCCEE
T ss_pred             CCCcCCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCCcCCCCCHHHHHHHHHcCCCe
Confidence                      579999999999999999999999999999999999999999999987665

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}

Probab=99.87  E-value=9.3e-22  Score=147.95  Aligned_cols=93  Identities=23%  Similarity=0.350  Sum_probs=86.0

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCC--CCHHHHHHHhhC------------------------------------
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRD--KSQEEVATIMKG------------------------------------   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~--~~~~~~~~~l~~------------------------------------   43 (175)
                      .|.|+|+|+++|+|+.||+|++|||+++.+  +++.+++.+++.                                    
T Consensus        51 ~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~~~~~~~~v~l~v~R~~~~~~~~~~v~l~~~~~~~lG~~  130 (206)
T 3r0h_A           51 HVYPEGQVAADKRLKIFDHICDINGTPIHVGSMTTLKVHQLFHTTYEKAVTLTVFRADPPELEKFNVDLMKKAGKELGLS  130 (206)
T ss_dssp             EECTTSHHHHHCCCCTTCEEEEETTEECCGGGSCHHHHHHHHHSCCSSEEEEEEECCSSCCEEEEEEEEECCTTCCCCEE
T ss_pred             EECCCChHHhcCCCCCCCEEEEECCEEcCCCccCHHHHHHHHHhcCCCceEEEEEecccCCCcEEEEEEecCCCCccCeE
Confidence            578999999999999999999999999999  889988877641                                    


Q ss_pred             ------CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          44 ------GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        44 ------gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                            ++||..|.++|+|+++|+|++||+|++|||+++.+++|.+++.++++.+..
T Consensus       131 ~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~  187 (206)
T 3r0h_A          131 LSPNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGK  187 (206)
T ss_dssp             EEECSSCEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSE
T ss_pred             EEcCCceEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence                  589999999999999998999999999999999999999999999987666

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A

Probab=99.78  E-value=1.3e-18  Score=130.07  Aligned_cols=93  Identities=20%  Similarity=0.347  Sum_probs=83.9

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh---------------------------------------
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK---------------------------------------   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~---------------------------------------   42 (175)
                      .|.|+|||+++|+|+.||+|++|||.++.++++.++..+++                                       
T Consensus        42 ~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~~~~~~~~~~~~v~l~~~~~~~l  121 (196)
T 1p1d_A           42 YIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAESVIPSSGTFHVKLPKKHSVEL  121 (196)
T ss_dssp             ECCTTSHHHHTSCCCSSCCEEEETTBCSTTSCHHHHHHHHHTCCSSSEEEEEEEECSCSCCBCCSSCEEEEECCCSSCCC
T ss_pred             EECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEecCCCCCCCCCCcEEEEecCCCCCCc
Confidence            47899999999999999999999999999888887776663                                       


Q ss_pred             -------------CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 -------------GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 -------------~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                                   .+++|..|.++|||+++|+|++||+|++|||+++.+++++++.++|++.+..
T Consensus       122 G~~~~~~~~~~~~~gv~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~  186 (196)
T 1p1d_A          122 GITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCEDL  186 (196)
T ss_dssp             CCEEECSCSSSTTCCCEEEECCSSSHHHHTSCCCTTCEEEEETTEEGGGCCHHHHHHHHHHCTTC
T ss_pred             CEEEECCCCCCCCCCEEEEEECCCCcHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCE
Confidence                         1468999999999999999999999999999999999999999999988555

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}

Probab=99.78  E-value=1.4e-18  Score=130.13  Aligned_cols=93  Identities=29%  Similarity=0.500  Sum_probs=82.9

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC--------------------------------------
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG--------------------------------------   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~--------------------------------------   43 (175)
                      .|.|+|||+++|.|+.||+|++|||.++.+++|.++..+++.                                      
T Consensus        39 ~v~~~spA~~aggl~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~~~~~~g~~~~~~~~~v~l~~~~~~  118 (200)
T 2qt5_A           39 NLRQGGIAARSDQLDVGDYIKAVNGINLAKFRHDEIISLLKNVGERVVLEVEYELPPVSIQGSSVMFRTVEVTLHKEGNT  118 (200)
T ss_dssp             EECTTSHHHHTTSCCTTCEEEEETTEECTTSCHHHHHHHHHTCCSEEEEEEEEECCCCCCCCSSEEEEEEEEEEECBTTB
T ss_pred             EECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEeccCCCcccCCCccceeEEEEEEecCCCC
Confidence            578999999994499999999999999999999888876630                                      


Q ss_pred             -----------------CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          44 -----------------GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        44 -----------------gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                                       +++|..|.++|+|+++|+|++||+|++|||+++.+++++++.++|++.+..
T Consensus       119 lG~~l~~g~~~~~~~~~g~~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~  186 (200)
T 2qt5_A          119 FGFVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQE  186 (200)
T ss_dssp             CSEEEEEECCSSTTTCEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTTCSE
T ss_pred             eEEEEECCCCCCccCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence                             357889999999999999999999999999999999999999999985444

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A

Probab=99.77  E-value=1.1e-19  Score=149.08  Aligned_cols=92  Identities=28%  Similarity=0.486  Sum_probs=38.3

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC------------------------------------Ce
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG------------------------------------GI   45 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~------------------------------------gi   45 (175)
                      .|.|||||+++|+|+.||+|++|||+++.+|+|.++..+++.                                    +.
T Consensus       238 ~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~~~~~~v~l~v~r~~~~~~v~l~~~~~~~~lG~~i~~g  317 (388)
T 3suz_A          238 NMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGLKNQTQVKLNIVSCPPVTTVLIKRPDLKYQLGFSVQNG  317 (388)
T ss_dssp             CCCCSSHHHHTCCCCTTCEEEEETTEECSSCCSTTHHHHTTTCTTCSCEEEEEEECCSCC--------------------
T ss_pred             eeCCCCHHHHcCCCCCCCEEEEECCEEccCCCHHHHHHHHHhccCCCccccccccccccceeeEeecCCCCccceEEecC
Confidence            688999999999999999999999999999999888877642                                    23


Q ss_pred             EEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          46 LVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        46 ~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      +|..|.++|+|+++| |++||+|++|||+++.+.+|++++.+|++.+..
T Consensus       318 ~I~~V~~gs~A~~aG-L~~GD~Il~VNg~~v~~~s~~~~~~~l~~~~~~  365 (388)
T 3suz_A          318 IICSLMRGGIAERGG-VRVGHRIIEINGQSVVATAHEKIVQALSNSVGE  365 (388)
T ss_dssp             -------------------------------------------------
T ss_pred             EEEEeecCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCe
Confidence            788999999999999 999999999999999999999999999998777

>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A

Probab=99.70  E-value=1e-16  Score=121.03  Aligned_cols=123  Identities=17%  Similarity=0.154  Sum_probs=92.4

Q ss_pred             ccCCCChhhhcCCCCCC-CEEEEECCeeCCCCCHHH--HHHHhh------------------------------------
Q psy1521           2 RAVPGGIAATDGRLLKG-DQIMSVDGTDVRDKSQEE--VATIMK------------------------------------   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~G-D~Il~Vng~~v~~~~~~~--~~~~l~------------------------------------   42 (175)
                      .|.|+|||+++| |+.| |+|++|||+++.++.+..  ......                                    
T Consensus        22 ~V~~~SpA~~AG-L~~G~D~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~~~~~~v~l~p~~~~~~~~~lGi~  100 (209)
T 3rle_A           22 RVQENSPGHRAG-LEPFFDFIVSINGSRLNKDNDTLKDLLKANVEKPVKMLIYSSKTLELRETSVTPSNLWGGQGLLGVS  100 (209)
T ss_dssp             EECTTSHHHHTT-CCTTTEEEEEETTEECCSSSSHHHHHHHHTTTSCEEEEEEETTTCCEEEEEECCCSSSSSSSSSCEE
T ss_pred             EECCCCHHHHCC-CCcCCeEEEEECCEECcCHHHHHHHHHhcCCCCEEEEEEEecCCceEEEEEEcccccccccCccceE
Confidence            588999999999 9999 999999999999987532  111110                                    


Q ss_pred             -----------CCeEEEEecCCCcccccCCcCC-CCEEEEECCeecCCCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCC
Q psy1521          43 -----------GGILVHDIYPEGAAAKDARLKF-GDQILELTGEDFRNITHAKAMAHLRLTPAKAKPCPTVPSEPNANAT  110 (175)
Q Consensus        43 -----------~gi~V~~v~~gg~A~~~G~L~~-GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~~~~~~~~~~~~~~~~~  110 (175)
                                 .|++|..|.++|||+++| |++ ||+|++|||. +.  ++++...++++....                
T Consensus       101 ~~~~~~~~~~~~Gv~V~~V~~~spA~~aG-l~~~GD~I~~ing~-v~--~~~~l~~~l~~~~g~----------------  160 (209)
T 3rle_A          101 IRFCSFDGANENVWHVLEVESNSPAALAG-LRPHSDYIIGADTV-MN--ESEDLFSLIETHEAK----------------  160 (209)
T ss_dssp             EEEEECTTGGGSCEEEEEECTTSHHHHHT-CCTTTEEEEEESSC-CC--SSSCHHHHHHHTTTS----------------
T ss_pred             EeecChhHccccceEEEEeCCCChHHHCC-CCCCCCEEEECCCE-eC--CHHHHHHHHHhCCCC----------------
Confidence                       156899999999999999 999 9999999997 64  457777888876333                


Q ss_pred             CCCcccceeeeeeeeeecccCCCCCCCCCceEEEEEEeC----CCCCcCEEEEcCc
Q psy1521         111 TGEKTTFYFHFQVKLVVLRDTVTKEDDLLEFVDVELTKK----AGKGFGLSLVGRK  162 (175)
Q Consensus       111 ~~~~~~~~~~~~v~l~v~r~~~~~~~~~~~~~~v~l~k~----~~~~lGfsi~gg~  162 (175)
                                 .+.|.+.|...      ...++++|..+    +.+-||+.+..+.
T Consensus       161 -----------~v~l~v~r~~~------~~~~~v~l~p~~~~~g~g~lG~~~~~g~  199 (209)
T 3rle_A          161 -----------PLKLYVYNTDT------DNCREVIITPNSAWGGEGSLGCGIGYGY  199 (209)
T ss_dssp             -----------CEEEEEEETTT------TEEEEEEECCCTTSSSSSSSCEEEECSG
T ss_pred             -----------eEEEEEEECCc------eEEEEEEEEecCCCCCceeeeEEecCce
Confidence                       28899888632      13467777653    2344788876553

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A

Probab=99.70  E-value=1.9e-16  Score=115.37  Aligned_cols=91  Identities=20%  Similarity=0.331  Sum_probs=79.9

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh-------------C----------------Ce-----EE
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK-------------G----------------GI-----LV   47 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~-------------~----------------gi-----~V   47 (175)
                      .|.|+|||+++| |+.||+|++|||.++.+++++.+..+++             +                |+     +|
T Consensus        33 ~v~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~~~~~v~l~vr~~~~~~~v~l~~~~~~~lG~~~~~g~v  111 (166)
T 1w9e_A           33 LVQANSPASLVG-LRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKI  111 (166)
T ss_dssp             EECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHHCCSSEEEEEEECCTTCEEEEEECCTTSCCSEEEETTEE
T ss_pred             EECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEcCCCcEEEEEecCCCCcEeEEEeCCEE
Confidence            578999999999 9999999999999999999865555543             0                22     78


Q ss_pred             EEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          48 HDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        48 ~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      ..+.++|||+++| |++||+|++|||+++.++++.++...+++.+..
T Consensus       112 ~~v~~~s~a~~aG-l~~GD~I~~ing~~v~~~~~~~v~~~v~r~g~~  157 (166)
T 1w9e_A          112 TSIVKDSSAARNG-LLTEHNICEINGQNVIGLKDSQIADILSTSGTV  157 (166)
T ss_dssp             EEECTTSHHHHTT-CCSSEEEEEETTEECTTCCHHHHHHHHHHSCSE
T ss_pred             EEEccCCHHHHcC-CCCCCEEEEECCEECCCCChHHHHHHHhhCCCE
Confidence            8999999999999 999999999999999999999998888887765

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=99.69  E-value=1.6e-16  Score=139.39  Aligned_cols=93  Identities=34%  Similarity=0.573  Sum_probs=82.5

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh---------------------------------------
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK---------------------------------------   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~---------------------------------------   42 (175)
                      .|.++|+|+++|+|+.||+|++|||+++.+++|.+++.+++                                       
T Consensus       190 ~V~~gs~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~v~l~V~R~g~~~~~~~~~~p~~~~~~s~~~~~~~  269 (721)
T 2xkx_A          190 KIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKVAKPSNAYLSDSYAPPDITTSYSQHLDNEI  269 (721)
T ss_pred             EeCCCCchhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHcCCCeEEEEEEeCCcccccCCCCCCCcccCCCCCccccc
Confidence            57899999999999999999999999999988655543331                                       


Q ss_pred             -------------------------------------------------------------CCeEEEEecCCCcccccCC
Q psy1521          43 -------------------------------------------------------------GGILVHDIYPEGAAAKDAR   61 (175)
Q Consensus        43 -------------------------------------------------------------~gi~V~~v~~gg~A~~~G~   61 (175)
                                                                                   .|+||..|.++|+|+++|+
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~v~l~~~~~~lG~~i~~~~~~~gv~V~~V~~gs~A~~aG~  349 (721)
T 2xkx_A          270 SHSSYLGTDYPTAMTPTSPRRYSPVAKDLLGEEDIPREPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSGE  349 (721)
T ss_pred             CCcccccccccccCCCCCCcccCCcccccccccccccceEEEEEEECCCCccEEEeccCCCCCeEEEEeCCCChHHhcCC
Confidence                                                                         1568999999999999999


Q ss_pred             cCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          62 LKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        62 L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      |++||+|++|||+++.+++|++++.+|++.+..
T Consensus       350 L~~GD~Il~VNg~~v~~~~~~e~~~~l~~~~~~  382 (721)
T 2xkx_A          350 LRKGDQILSVNGVDLRNASHEQAAIALKNAGQT  382 (721)
T ss_pred             CccCCEEEEECCEECCCCCHHHHHHHHHhcCCe
Confidence            999999999999999999999999999987766

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A

Probab=99.63  E-value=2.5e-15  Score=124.84  Aligned_cols=89  Identities=22%  Similarity=0.336  Sum_probs=74.5

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHH-HHHHhh--------------------------------------
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEE-VATIMK--------------------------------------   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~-~~~~l~--------------------------------------   42 (175)
                      .|.|+|||+++| |+.||+|++|||+++.++.+-. ++....                                      
T Consensus       269 ~V~~~spA~~aG-L~~GD~I~~vnG~~v~~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~l~~~~~~~~~~~~~~~g  347 (436)
T 4a8c_A          269 EVLPGSGSAKAG-VKAGDIITSLNGKPLNSFAELRSRIATTEPGTKVKLGLLRNGKPLEVEVTLDTSTSSSASAEMITPA  347 (436)
T ss_pred             EECCCChHHHCC-CCCCCEEEEECCEECCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEECCCCcccccccccccC
Confidence            578999999999 9999999999999999886422 111110                                      


Q ss_pred             ---------------CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 ---------------GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ---------------~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                                     .|++|..|.++|||+++| |++||+|++|||+.+.  +++++.+++++.+..
T Consensus       348 l~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG-L~~GD~I~~vng~~v~--~~~~~~~~l~~~~~~  411 (436)
T 4a8c_A          348 LEGATLSDGQLKDGGKGIKIDEVVKGSPAAQAG-LQKDDVIIGVNRDRVN--SIAEMRKVLAAKPAI  411 (436)
T ss_pred             ceeeecccccccCCCCCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHhCCCe
Confidence                           157899999999999999 9999999999999995  579999999986555

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}

Probab=99.62  E-value=6e-15  Score=110.57  Aligned_cols=99  Identities=38%  Similarity=0.546  Sum_probs=84.0

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCC--CCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCcccceee
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRN--ITHAKAMAHLRLTPAKAKPCPTVPSEPNANATTGEKTTFYFH  120 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~--~~~~~a~~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (175)
                      .|++|..|.++|||+++|+|++||+|++|||+++.+  ++|.+++.+++..+..                          
T Consensus        45 ~g~~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~~~~~~~--------------------------   98 (206)
T 3r0h_A           45 TGCVITHVYPEGQVAADKRLKIFDHICDINGTPIHVGSMTTLKVHQLFHTTYEK--------------------------   98 (206)
T ss_dssp             SCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECCGGGSCHHHHHHHHHSCCSS--------------------------
T ss_pred             CCeEEEEECCCChHHhcCCCCCCCEEEEECCEEcCCCccCHHHHHHHHHhcCCC--------------------------
Confidence            489999999999999998899999999999999999  9999999999987766                          


Q ss_pred             eeeeeeecccCCCCCCCCCceEEEEEEeCCCCCcCEEEEcCcCCCceEEEeccC
Q psy1521         121 FQVKLVVLRDTVTKEDDLLEFVDVELTKKAGKGFGLSLVGRKQGPGVFISDLVS  174 (175)
Q Consensus       121 ~~v~l~v~r~~~~~~~~~~~~~~v~l~k~~~~~lGfsi~gg~~~~gi~I~~i~~  174 (175)
                       .+.|++.|+...    ....+++.+.+....+|||++..+.  .|+||.+|.|
T Consensus        99 -~v~l~v~R~~~~----~~~~~~v~l~~~~~~~lG~~~~~~~--~gv~V~~V~~  145 (206)
T 3r0h_A           99 -AVTLTVFRADPP----ELEKFNVDLMKKAGKELGLSLSPNE--IGCTIADLIQ  145 (206)
T ss_dssp             -EEEEEEECCSSC----CEEEEEEEEECCTTCCCCEEEEECS--SCEEEEEECT
T ss_pred             -ceEEEEEecccC----CCcEEEEEEecCCCCccCeEEEcCC--ceEEEEEECC
Confidence             478888887543    2346778887766678999998643  5899999976

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A

Probab=99.62  E-value=6.7e-15  Score=109.12  Aligned_cols=100  Identities=30%  Similarity=0.545  Sum_probs=84.6

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCcccceeeee
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKPCPTVPSEPNANATTGEKTTFYFHFQ  122 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (175)
                      .++||..|.++|||+++|+|++||+|++|||+++.+++|.++..+++..+..                            
T Consensus        35 ~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~----------------------------   86 (196)
T 3gsl_A           35 PSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSI----------------------------   86 (196)
T ss_dssp             CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTSCSE----------------------------
T ss_pred             CCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCc----------------------------
Confidence            3899999999999999999999999999999999999999999999988776                            


Q ss_pred             eeeeecccCCCCCCCCCceEEEEEEeCCCCCcCEEEEcCcC------CCceEEEeccCC
Q psy1521         123 VKLVVLRDTVTKEDDLLEFVDVELTKKAGKGFGLSLVGRKQ------GPGVFISDLVSE  175 (175)
Q Consensus       123 v~l~v~r~~~~~~~~~~~~~~v~l~k~~~~~lGfsi~gg~~------~~gi~I~~i~~~  175 (175)
                      +.|++.|....    ....+++++.+.. .+|||++.++..      ..|+||..|.|.
T Consensus        87 v~l~v~r~~~~----~~~~~~v~l~~~~-~~lG~~~~~~~~~~~~~~~~gv~V~~V~~g  140 (196)
T 3gsl_A           87 VRLYVMRRKPP----AEKVMEIKLIKGP-KGLGFSIAGGVGNQHIPGDNSIYVTKIIEG  140 (196)
T ss_dssp             EEEEEEEECCC----CEEEEEEEEEEBT-TBSCEEEEESBTSCSBTTBCCEEEEEECTT
T ss_pred             EEEEEEecCCC----ccccEEEEEecCC-CCceEEEEccCCCcCCCCCCCEEEEEECCC
Confidence            89999886543    1245778887654 589999998753      358999999863

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A

Probab=99.61  E-value=3.7e-15  Score=124.31  Aligned_cols=89  Identities=17%  Similarity=0.241  Sum_probs=73.5

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHH-HHHHHhh--------------------------------------
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQE-EVATIMK--------------------------------------   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~-~~~~~l~--------------------------------------   42 (175)
                      .|.|+|||+++| |+.||+|++|||+++.++.+- .++...+                                      
T Consensus       288 ~V~~~spA~~aG-L~~GDvI~~vnG~~v~~~~~l~~~l~~~~~g~~v~l~V~R~g~~~~~~v~l~~~~~~~~~~~~~~~~  366 (451)
T 3pv2_A          288 QVNPNSPAELAG-LKAGDIITQINDTKITQATQVKTTISLLRVGSTVKIIVERDNKPLTLSAVVTDIKSHEQKLQSNNPF  366 (451)
T ss_dssp             EECTTSHHHHHT-CCTTCEEEEETTEECCSHHHHHHHHHTSCTTCEEEEEEEETTEEEEEEEECBCHHHHHHHHHHHSTT
T ss_pred             ecCCCChHHHcC-CCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEEccCCcccccccccccc
Confidence            578999999999 999999999999999987531 1111110                                      


Q ss_pred             -------------------CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 -------------------GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 -------------------~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                                         .|++|..|.++|||+++| |++||+|++|||+++.  +.++..+++++.+..
T Consensus       367 ~~G~~l~~~~~~~~~~~~~~Gv~V~~V~~gspA~~aG-L~~GD~I~~Vng~~v~--~~~~~~~~l~~~~~~  434 (451)
T 3pv2_A          367 LYGLALRAFEQESPPHGNVIGVQVVGASENSAGWRAG-IRPGDIIISANKKPVT--DVKSLQTIAQEKKKE  434 (451)
T ss_dssp             TTTEEEEEEEEECTTSCEEEEEEEEEECTTSHHHHHT-CCTTCEEEEETTEECC--SHHHHHHHTTSSCSC
T ss_pred             ccccccccCChhHhcccCCCceEEEEECCCCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHhcCCCe
Confidence                               146899999999999999 9999999999999996  468999999885555

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A

Probab=99.54  E-value=6.4e-14  Score=104.44  Aligned_cols=104  Identities=22%  Similarity=0.276  Sum_probs=83.2

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCC-CCCCCCCCCCCCCCCCCCCCCcccceeeee
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTP-AKAKPCPTVPSEPNANATTGEKTTFYFHFQ  122 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (175)
                      +++|..|.++|||+++|+|++||+|++|||+.+.+++|.++..+|+... ..                           .
T Consensus        37 ~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~---------------------------~   89 (196)
T 1p1d_A           37 PPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITS---------------------------K   89 (196)
T ss_dssp             SEEEEECCTTSHHHHTSCCCSSCCEEEETTBCSTTSCHHHHHHHHHTCCSSS---------------------------E
T ss_pred             CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCC---------------------------e
Confidence            7899999999999999999999999999999999989999999999874 22                           2


Q ss_pred             eeeeecccCCCCCCCCCceEEEEEEeCCCCCcCEEEEcCcC---CCceEEEeccC
Q psy1521         123 VKLVVLRDTVTKEDDLLEFVDVELTKKAGKGFGLSLVGRKQ---GPGVFISDLVS  174 (175)
Q Consensus       123 v~l~v~r~~~~~~~~~~~~~~v~l~k~~~~~lGfsi~gg~~---~~gi~I~~i~~  174 (175)
                      +.|++.|+...........+++++.++....|||++.....   ..|+||..|.|
T Consensus        90 v~l~v~R~~~~~~~~~~~~~~v~l~~~~~~~lG~~~~~~~~~~~~~gv~V~~V~~  144 (196)
T 1p1d_A           90 VTLEIEFDVAESVIPSSGTFHVKLPKKHSVELGITISSPSSRKPGDPLVISDIKK  144 (196)
T ss_dssp             EEEEEEECSCSCCBCCSSCEEEEECCCSSCCCCCEEECSCSSSTTCCCEEEECCS
T ss_pred             EEEEEEecCCCCCCCCCCcEEEEecCCCCCCcCEEEECCCCCCCCCCEEEEEECC
Confidence            88888887643211112457788876566789999987642   46899999876

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}

Probab=99.54  E-value=9.3e-14  Score=103.75  Aligned_cols=102  Identities=25%  Similarity=0.326  Sum_probs=81.5

Q ss_pred             CCeEEEEecCCCccccc-CCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCcccceeee
Q psy1521          43 GGILVHDIYPEGAAAKD-ARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKPCPTVPSEPNANATTGEKTTFYFHF  121 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~-G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (175)
                      .+++|..|.++|||+++ | |++||+|++|||+++.+++|.++..++++.+..                           
T Consensus        33 ~~~~V~~v~~~spA~~agg-l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~---------------------------   84 (200)
T 2qt5_A           33 GKPRVSNLRQGGIAARSDQ-LDVGDYIKAVNGINLAKFRHDEIISLLKNVGER---------------------------   84 (200)
T ss_dssp             SCSEEEEECTTSHHHHTTS-CCTTCEEEEETTEECTTSCHHHHHHHHHTCCSE---------------------------
T ss_pred             CCeEEEEECCCChHHhcCC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCe---------------------------
Confidence            36899999999999999 6 999999999999999999999999999988776                           


Q ss_pred             eeeeeecccCCCCCC-CCC---ceEEEEEEeCCCCCcCEEEEcCcC-----CCceEEEeccC
Q psy1521         122 QVKLVVLRDTVTKED-DLL---EFVDVELTKKAGKGFGLSLVGRKQ-----GPGVFISDLVS  174 (175)
Q Consensus       122 ~v~l~v~r~~~~~~~-~~~---~~~~v~l~k~~~~~lGfsi~gg~~-----~~gi~I~~i~~  174 (175)
                       +.|++.|+.+.... ...   .++++++.+ ...+|||.+.++..     ..|+||..+.|
T Consensus        85 -v~l~v~R~~~~~~~~g~~~~~~~~~v~l~~-~~~~lG~~l~~g~~~~~~~~~g~~V~~v~~  144 (200)
T 2qt5_A           85 -VVLEVEYELPPVSIQGSSVMFRTVEVTLHK-EGNTFGFVIRGGAHDDRNKSRPVVITCVRP  144 (200)
T ss_dssp             -EEEEEEEECCCCCCCCSSEEEEEEEEEEEC-BTTBCSEEEEEECCSSTTTCEEEEEEEECT
T ss_pred             -EEEEEeccCCCcccCCCccceeEEEEEEec-CCCCeEEEEECCCCCCccCCCCEEEEEECC
Confidence             88888876532110 111   456777764 45789999997652     45899999876

>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}

Probab=99.50  E-value=1.6e-13  Score=92.76  Aligned_cols=73  Identities=30%  Similarity=0.461  Sum_probs=63.9

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCcccceeeee
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKPCPTVPSEPNANATTGEKTTFYFHFQ  122 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (175)
                      .+++|..|.++|||+++|+|++||+|++|||+++.+++|.+++.++++.+..                            
T Consensus        32 ~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~----------------------------   83 (106)
T 4amh_A           32 NSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEAVTALKNTSDF----------------------------   83 (106)
T ss_dssp             CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHSCCSE----------------------------
T ss_pred             CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCe----------------------------
Confidence            3899999999999999999999999999999999999999999999988766                            


Q ss_pred             eeeeecccCCCCCCCCCceEEEEEEe
Q psy1521         123 VKLVVLRDTVTKEDDLLEFVDVELTK  148 (175)
Q Consensus       123 v~l~v~r~~~~~~~~~~~~~~v~l~k  148 (175)
                      +.|++.|+...     ...++++|.+
T Consensus        84 v~l~v~R~~~~-----~~~~~v~l~~  104 (106)
T 4amh_A           84 VYLKVAKPGSG-----EKIMEIKLIK  104 (106)
T ss_dssp             EEEEEECCSSS-----CSEEEEEEEC
T ss_pred             EEEEEEeCCCC-----CeEEEEEEec
Confidence            89999987542     2457777764

>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}

Probab=99.48  E-value=1.2e-13  Score=91.14  Aligned_cols=51  Identities=18%  Similarity=0.244  Sum_probs=48.9

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .+||++|.++|+|+++|+|++||+|++|||+++.+++|.+++++||+.+..
T Consensus        29 ~~~I~rI~~gg~a~r~g~L~vGD~I~~VNG~~v~g~~h~evv~lLk~~~~g   79 (95)
T 3gge_A           29 YAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYDVAKKLKELKKE   79 (95)
T ss_dssp             CCEEEEECTTSHHHHCTTCCTTCEEEEETTEECTTCCHHHHHHHHHHSCTT
T ss_pred             cEEEEEEcCCChHHhcCCCCCCCEEEEECCEEccCCCHHHHHHHHHhCCCC
Confidence            579999999999999999999999999999999999999999999998775

>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A

Probab=99.46  E-value=9.6e-14  Score=89.57  Aligned_cols=48  Identities=17%  Similarity=0.273  Sum_probs=45.5

Q ss_pred             EEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          46 LVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        46 ~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      +|..+.++|||+++| |++||+|++|||+++.+++|++++++||+++..
T Consensus        26 ~I~~v~~gspA~~aG-l~~GD~Il~VNG~~v~~~~~~evv~llr~~g~~   73 (82)
T 1r6j_A           26 KITSIVKDSSAARNG-LLTEHNICEINGQNVIGLKDSQIADILSTSGTV   73 (82)
T ss_dssp             EEEEECTTSHHHHHT-CCSSEEEEEETTEECTTCCHHHHHHHHHHSCSE
T ss_pred             EEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCE
Confidence            478999999999999 999999999999999999999999999987777

>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}

Probab=99.44  E-value=2e-13  Score=89.22  Aligned_cols=51  Identities=29%  Similarity=0.417  Sum_probs=49.4

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      ++||..|.++|||+++|+|++||+|++|||+++.+.+|+++..+|++.+..
T Consensus        22 gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~i~~~~~~   72 (88)
T 3e17_A           22 QIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKSRGK   72 (88)
T ss_dssp             EEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHTTTE
T ss_pred             CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence            799999999999999999999999999999999999999999999998877

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A

Probab=99.43  E-value=3.2e-14  Score=118.53  Aligned_cols=87  Identities=24%  Similarity=0.368  Sum_probs=30.4

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh---------------------------------------
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK---------------------------------------   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~---------------------------------------   42 (175)
                      +|.|+|||+++| |+.||+|++|||..+.++.+  ....+.                                       
T Consensus       292 ~V~~gspA~~AG-L~~GDvI~~inG~~v~~~~~--l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~~~~~~~~~~~~~~~~  368 (448)
T 1ky9_A          292 QVLPNSSAAKAG-IKAGDVITSLNGKPISSFAA--LRAQVGTMPVGSKLTLGLLRDGKQVNVNLELQQSSQNQVDSSSIF  368 (448)
T ss_dssp             CCTTCSSSTTTT-CCTTCEECBSSSSBCCSSHH--HHHHTTSSBTTCCCEEEEESSSCEEECCCC---------------
T ss_pred             EeccCCHHHHcC-CCCCCEEEEECCEEcCCHHH--HHHHHHhcCCCCEEEEEEEECCEEEEEEEEEecCCCccccccccc
Confidence            688999999999 99999999999999998852  222111                                       


Q ss_pred             --------------CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 --------------GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 --------------~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                                    .|++|..|.++|||+++| |++||+|++|||+.+.  +++++.++|++.+..
T Consensus       369 ~~~~G~~l~~~~~~~gv~V~~V~~gspA~~aG-L~~GDiI~~vng~~v~--~~~~l~~~l~~~~~~  431 (448)
T 1ky9_A          369 NGIEGAEMSNKGKDQGVVVNNVKTGTPAAQIG-LKKGDVIIGANQQAVK--NIAELRKVLDSKPSV  431 (448)
T ss_dssp             ------------------------------------------------------------------
T ss_pred             ccccceEeeccCCCCeEEEEEecCCCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHcCCCe
Confidence                          246788999999999999 9999999999999996  467888888865545

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A

Probab=99.41  E-value=3.9e-12  Score=92.35  Aligned_cols=90  Identities=22%  Similarity=0.371  Sum_probs=72.8

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCcccceeeee
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKPCPTVPSEPNANATTGEKTTFYFHFQ  122 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (175)
                      .+++|..|.++|||+++| |++||+|++|||+.+.+++++.+..+++.....                           .
T Consensus        27 ~g~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~~~~---------------------------~   78 (166)
T 1w9e_A           27 NGIFVQLVQANSPASLVG-LRFGDQVLQINGENCAGWSSDKAHKVLKQAFGE---------------------------K   78 (166)
T ss_dssp             TEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHHCCSS---------------------------E
T ss_pred             CCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCCCC---------------------------E
Confidence            489999999999999999 999999999999999999887888888876554                           2


Q ss_pred             eeeeecccCCCCCCCCCceEEEEEEeCCCCCcCEEEEcCcCCCceEEEeccC
Q psy1521         123 VKLVVLRDTVTKEDDLLEFVDVELTKKAGKGFGLSLVGRKQGPGVFISDLVS  174 (175)
Q Consensus       123 v~l~v~r~~~~~~~~~~~~~~v~l~k~~~~~lGfsi~gg~~~~gi~I~~i~~  174 (175)
                      +.|++.|..        .+++++|.+.....|||++..     | +|..+.|
T Consensus        79 v~l~vr~~~--------~~~~v~l~~~~~~~lG~~~~~-----g-~v~~v~~  116 (166)
T 1w9e_A           79 ITMTIRDRP--------FERTITMHKDSTGHVGFIFKN-----G-KITSIVK  116 (166)
T ss_dssp             EEEEEECCT--------TCEEEEEECCTTSCCSEEEET-----T-EEEEECT
T ss_pred             EEEEEEcCC--------CcEEEEEecCCCCcEeEEEeC-----C-EEEEEcc
Confidence            888884321        347888886556789999872     4 7777655

>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A

Probab=99.41  E-value=5.8e-13  Score=90.27  Aligned_cols=49  Identities=35%  Similarity=0.589  Sum_probs=47.3

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLT   91 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~   91 (175)
                      .++||.+|.++|||+++|+|++||+|++|||+++.+++|++++.+|++.
T Consensus        33 ~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~   81 (108)
T 3cbz_A           33 GGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLRDI   81 (108)
T ss_dssp             CEEEEEEECTTSHHHHHCCCCTTCEEEEETTEETTSCCHHHHHHHHHHH
T ss_pred             CCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhc
Confidence            4899999999999999999999999999999999999999999999987

>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}

Probab=99.41  E-value=3.8e-13  Score=92.70  Aligned_cols=52  Identities=29%  Similarity=0.513  Sum_probs=49.5

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .++||..|.++|||+++|+|++||+|++|||+++.+++|.+++.+|++.+..
T Consensus        53 ~gv~V~~V~~gspA~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~  104 (118)
T 3b76_A           53 LPIYVISVEPGGVISRDGRIKTGDILLNVDGVELTEVSRSEAVALLKRTSSS  104 (118)
T ss_dssp             CCEEEEEECTTSHHHHHCSSCTTCEEEEETTEEGGGSCHHHHHHHHHSCCSE
T ss_pred             CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence            4799999999999999999999999999999999999999999999988766

>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.40  E-value=7.4e-13  Score=90.95  Aligned_cols=51  Identities=24%  Similarity=0.368  Sum_probs=48.9

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      ++||..|.++|||+++|+|++||+|++|||+++.+++|.+++.+|++.+..
T Consensus        50 g~~V~~v~~~s~A~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~~~~  100 (117)
T 1ujd_A           50 GAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQSGE  100 (117)
T ss_dssp             EEEEEEECTTCHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHSCCSSC
T ss_pred             CEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCE
Confidence            789999999999999999999999999999999999999999999997766

>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.39  E-value=5.5e-13  Score=90.57  Aligned_cols=49  Identities=27%  Similarity=0.487  Sum_probs=47.7

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTP   92 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~   92 (175)
                      ++||..|.++|||+++|+|++||+|++|||+++.+++|++++++|++..
T Consensus        42 ~~~V~~v~~~s~A~~aG~l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~   90 (109)
T 1wi4_A           42 LVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRAK   90 (109)
T ss_dssp             SEEEEEECTTSHHHHHCSCCTTCBEEEETTSCCTTCCHHHHHHHHHHSC
T ss_pred             CEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHccc
Confidence            7999999999999999999999999999999999999999999999887

>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster}

Probab=99.38  E-value=1.3e-12  Score=88.31  Aligned_cols=52  Identities=19%  Similarity=0.300  Sum_probs=49.4

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .|++|..|.++|||+++|+|++||+|++|||+++.++++.++..++++.+..
T Consensus        25 ~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~~~~~   76 (106)
T 2la8_A           25 IGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGK   76 (106)
T ss_dssp             SSEEEEECCTTSCHHHHTTCCTTCEEEEESSCBCSSSCHHHHHHHHHSCBSC
T ss_pred             CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCe
Confidence            4899999999999999999999999999999999999999999999988777

>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}

Probab=99.38  E-value=1.2e-12  Score=85.89  Aligned_cols=52  Identities=42%  Similarity=0.581  Sum_probs=49.1

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .+++|..|.++|||+++|+|++||+|++|||+++.+.++.++..++++.+..
T Consensus        29 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~   80 (92)
T 2qg1_A           29 TGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLKCSLGT   80 (92)
T ss_dssp             CSCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSE
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence            4899999999999999999999999999999999999999999999987766

>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A

Probab=99.37  E-value=8.2e-13  Score=87.59  Aligned_cols=52  Identities=19%  Similarity=0.304  Sum_probs=49.2

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .|++|..|.++|||+++|+|++||+|++|||+++.++++.++..++++.+..
T Consensus        31 ~gv~V~~V~~~spA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~~~~~~~~   82 (96)
T 2qkv_A           31 IGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVSYALFKGANGK   82 (96)
T ss_dssp             SSEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSE
T ss_pred             CcEEEEEeCCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCc
Confidence            4899999999999999999999999999999999999999999999988766

>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}

Probab=99.37  E-value=1.5e-12  Score=86.04  Aligned_cols=52  Identities=27%  Similarity=0.464  Sum_probs=49.1

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .|++|..|.++|||+++|+|++||+|++|||+++.++++.++..+++..+..
T Consensus        29 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~   80 (95)
T 2vwr_A           29 PGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQIIQASGER   80 (95)
T ss_dssp             CSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSE
T ss_pred             CCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCE
Confidence            4899999999999999999999999999999999999999999999987666

>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.37  E-value=1e-12  Score=88.94  Aligned_cols=52  Identities=21%  Similarity=0.367  Sum_probs=48.4

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .++||..|.++|||+++|+|++||+|++|||+++.+++|++++.+|+..+..
T Consensus        44 ~g~~V~~v~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~   95 (108)
T 2d92_A           44 SVIVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLAEAVEILKAVPPG   95 (108)
T ss_dssp             EEEEEEEECTTCHHHHHTCCCTTCEEEEESSCBCTTCCHHHHHHHHHHSCSE
T ss_pred             CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCC
Confidence            3799999999999999999999999999999999999999999999986543

>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A

Probab=99.36  E-value=5.4e-13  Score=93.00  Aligned_cols=48  Identities=38%  Similarity=0.627  Sum_probs=46.6

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLT   91 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~   91 (175)
                      ++||..|.++|||+++|+|++||+|++|||+++.+++|.+++.+|++.
T Consensus        56 gi~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~  103 (127)
T 1wg6_A           56 GIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRS  103 (127)
T ss_dssp             EEEEEECCSSSSTHHHHTSCSCCBEEEETTEESTTSCHHHHHHHHHHH
T ss_pred             CEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHh
Confidence            799999999999999999999999999999999999999999999976

>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1

Probab=99.36  E-value=1.2e-12  Score=89.94  Aligned_cols=52  Identities=37%  Similarity=0.535  Sum_probs=49.1

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .+++|..|.++|||+++|+|++||+|++|||+++.++++.+++.++++.+..
T Consensus        54 ~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~g~~  105 (117)
T 2byg_A           54 NSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEV  105 (117)
T ss_dssp             CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSE
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence            4799999999999999999999999999999999999999999999987655

>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A

Probab=99.36  E-value=9.1e-13  Score=96.32  Aligned_cols=51  Identities=31%  Similarity=0.531  Sum_probs=48.9

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      ++||..|.++|||+++|+|++||+|++|||+++.+++|.+++.+|++++..
T Consensus       112 gi~V~~V~~gspA~~aG~L~~GD~Il~VNG~~v~~~~~~~~~~~l~~~g~~  162 (170)
T 3egg_C          112 GIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGR  162 (170)
T ss_dssp             EEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTBCHHHHHHHHHHCCSE
T ss_pred             CEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCE
Confidence            689999999999999999999999999999999999999999999997766

>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0

Probab=99.36  E-value=1.4e-12  Score=85.89  Aligned_cols=52  Identities=23%  Similarity=0.387  Sum_probs=49.4

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .+++|..|.++|||+++|+|++||+|++|||+++.+.+|+++..+|++.+..
T Consensus        28 ~~~~V~~v~~gspA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~   79 (93)
T 3o46_A           28 GAIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQILAQSQGA   79 (93)
T ss_dssp             CCEEEEEECTTSHHHHHTCCCTTCEEEEETTEESTTSCHHHHHHHHHHCCEE
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCe
Confidence            4899999999999999999999999999999999999999999999988766

>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.36  E-value=1.3e-12  Score=88.23  Aligned_cols=52  Identities=35%  Similarity=0.491  Sum_probs=49.1

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .++||..|.++|||+++|+|++||+|++|||+++.+++|.+++.+++..+..
T Consensus        40 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~   91 (107)
T 1wf8_A           40 LGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGN   91 (107)
T ss_dssp             EEEEEEEECTTCHHHHHCSSCTTCBEEEETTEECBSCCHHHHHHHHHHCCSE
T ss_pred             CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCe
Confidence            3899999999999999999999999999999999999999999999987666

>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A

Probab=99.36  E-value=1.4e-12  Score=91.31  Aligned_cols=49  Identities=16%  Similarity=0.232  Sum_probs=47.2

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTP   92 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~   92 (175)
                      ++||..|.++|||+++|+|++||+|++|||+++.+++|++++.+|++..
T Consensus        66 gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~  114 (131)
T 1wfg_A           66 CAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIILESK  114 (131)
T ss_dssp             EEEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTCCHHHHHHHHHHTS
T ss_pred             CEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcC
Confidence            7899999999999999999999999999999999999999999999874

>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A

Probab=99.36  E-value=2.4e-12  Score=85.10  Aligned_cols=52  Identities=38%  Similarity=0.651  Sum_probs=48.8

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .+++|..|.++|||+++|+|++||+|++|||+++.++++.++..+++..+..
T Consensus        33 ~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g~~   84 (96)
T 1d5g_A           33 GGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQV   84 (96)
T ss_dssp             SCCEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHHHSCCSE
T ss_pred             CCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence            4899999999999999999999999999999999999999999999986655

>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1

Probab=99.35  E-value=2.1e-12  Score=88.79  Aligned_cols=51  Identities=39%  Similarity=0.670  Sum_probs=48.9

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      +++|..|.++|||+++|+|++||+|++|||+++.++++.+++.++++.+..
T Consensus        54 gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~  104 (117)
T 2fne_A           54 PIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGT  104 (117)
T ss_dssp             EEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSS
T ss_pred             CEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence            789999999999999999999999999999999999999999999988777

>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=99.35  E-value=1.3e-12  Score=91.41  Aligned_cols=51  Identities=22%  Similarity=0.427  Sum_probs=48.0

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      ++||..|.++|||+++|.|++||+|++|||+++.+++|++++++|+..+..
T Consensus        58 ~i~I~~V~~gs~A~~aggL~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~  108 (130)
T 1i16_A           58 PLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDG  108 (130)
T ss_dssp             CCEEEEECSSCCCSSSCCCCTTCCEEECSSCBGGGSCHHHHHHHHHTSCSS
T ss_pred             CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCc
Confidence            799999999999999944999999999999999999999999999998765

>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.35  E-value=1.4e-12  Score=89.63  Aligned_cols=51  Identities=24%  Similarity=0.343  Sum_probs=48.2

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      ++||..|.++|||+++|+|++||+|++|||+++.+++|+++..+|++.+..
T Consensus        43 ~~~V~~V~~~spA~~aG~l~~GD~Il~Ing~~v~~~~~~~~~~~l~~~g~~   93 (117)
T 1v62_A           43 VITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLASISEK   93 (117)
T ss_dssp             EEEEEECCTTSHHHHHTCCCTTCBEEEETTEETTSCCHHHHHHHHHSCSSE
T ss_pred             CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCe
Confidence            499999999999999999999999999999999999999999999976665

>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A

Probab=99.34  E-value=3.4e-12  Score=82.88  Aligned_cols=51  Identities=29%  Similarity=0.501  Sum_probs=47.7

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .+++|..|.++|||+++| |++||+|++|||+++.+++++++..+|+..+..
T Consensus        26 ~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~   76 (87)
T 2pa1_A           26 TPIMVTKVAERGKAKDAD-LRPGDIIVAINGESAEGMLHAEAQSKIRQSPSP   76 (87)
T ss_dssp             EEEEEEEECSSSHHHHTT-CCTTCEEEEETTEESTTCCHHHHHHHHHTCCSS
T ss_pred             CCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence            378999999999999999 999999999999999999999999999987744

>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A

Probab=99.34  E-value=2.3e-12  Score=86.69  Aligned_cols=52  Identities=33%  Similarity=0.529  Sum_probs=49.0

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .+++|..|.++|||+++|+|++||+|++|||+++.+.++.+++.++++.+..
T Consensus        33 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~   84 (105)
T 2awx_A           33 NSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAVTALKNTSDF   84 (105)
T ss_dssp             CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHSCCSE
T ss_pred             CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence            4899999999999999999999999999999999999999999999987655

>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A

Probab=99.34  E-value=1.6e-12  Score=89.69  Aligned_cols=51  Identities=27%  Similarity=0.526  Sum_probs=48.2

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      ++||..|.++|||+++|.|++||+|++|||+++.+++|.+++.+++..+..
T Consensus        54 ~~~V~~V~~~spA~~aggL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~~~~  104 (120)
T 2iwo_A           54 PIFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLLKNASGS  104 (120)
T ss_dssp             EEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCBHHHHHHHHHHCCSE
T ss_pred             CEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence            789999999999999944999999999999999999999999999998777

>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1

Probab=99.34  E-value=1.9e-12  Score=84.52  Aligned_cols=51  Identities=25%  Similarity=0.315  Sum_probs=47.2

Q ss_pred             CCeEEEEecCCCcccc-cCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAK-DARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~-~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      ++++|.+|.++|||++ +| |++||+|++|||+++.+++|+++.++|++.+..
T Consensus        25 ~~~~I~~V~~gspA~~~ag-L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~~   76 (88)
T 1kwa_A           25 NHCIVARIMHGGMIHRQGT-LHVGDEIREINGISVANQTVEQLQKMLREMRGS   76 (88)
T ss_dssp             GGEEEEEECTTSHHHHHTC-CCTTCEEEEETTEEGGGSCHHHHHHHHHHCCEE
T ss_pred             CCEEEEEECCCCHHHHcCC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCCCc
Confidence            3789999999999999 66 999999999999999999999999999987655

>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A

Probab=99.34  E-value=2.3e-12  Score=86.83  Aligned_cols=52  Identities=31%  Similarity=0.471  Sum_probs=49.0

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .+++|..|.++|||+++|+|++||+|++|||+++.+++|.+++.+++..+..
T Consensus        38 ~gv~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~   89 (106)
T 3axa_A           38 LGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTSSV   89 (106)
T ss_dssp             EEEEEEEEBTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSE
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence            3799999999999999999999999999999999999999999999987666

>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.34  E-value=3.8e-12  Score=85.90  Aligned_cols=52  Identities=33%  Similarity=0.563  Sum_probs=48.4

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .++||..|.++|||+++|.|++||+|++|||+++.+++|.+++.+++..+..
T Consensus        41 ~gv~V~~V~~~spA~~aggL~~GD~Il~vng~~v~~~~~~~~~~~~~~~~~~   92 (107)
T 1uhp_A           41 EGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFKTAKEP   92 (107)
T ss_dssp             CCCEEEEECSSSHHHHTTCCCSSCEEEEETTEECTTCCHHHHHHHHHHCCSS
T ss_pred             CCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCc
Confidence            4899999999999999933999999999999999999999999999988777

>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A

Probab=99.34  E-value=2.4e-12  Score=86.13  Aligned_cols=52  Identities=33%  Similarity=0.530  Sum_probs=49.1

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .+++|..|.++|||+++|+|++||+|++|||+++.++++.+++.+++..+..
T Consensus        34 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~   85 (102)
T 2i1n_A           34 PGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHSRAVEALKEAGPV   85 (102)
T ss_dssp             CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHHSCSE
T ss_pred             CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence            4899999999999999999999999999999999999999999999987666

>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}

Probab=99.34  E-value=1.6e-12  Score=88.57  Aligned_cols=52  Identities=31%  Similarity=0.493  Sum_probs=49.4

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .+++|..|.++|||+++|+|++||+|++|||+++.+++|.+++.++++.+..
T Consensus        35 ~g~~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~   86 (113)
T 2g5m_B           35 LGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGR   86 (113)
T ss_dssp             EEEEEEECCTTSHHHHHTCSCTTCBEEEETTEECSSCCHHHHHHHHHHSCSS
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCe
Confidence            3899999999999999999999999999999999999999999999998776

>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A

Probab=99.33  E-value=2.7e-12  Score=82.95  Aligned_cols=51  Identities=22%  Similarity=0.354  Sum_probs=47.8

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .+++|..|.++|||+++| |++||+|++|||+++.+++|.++..+++..+..
T Consensus        25 ~~v~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~   75 (85)
T 1rgw_A           25 MPLTISRITPGSKAAQSQ-LSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYN   75 (85)
T ss_dssp             SCCBEEEECTTSHHHHSS-CCCCSBEEEETTEECTTCCHHHHHHHHTTCSSC
T ss_pred             CCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCcCHHHHHHHHHcCCCe
Confidence            378999999999999999 999999999999999999999999999887766

>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}

Probab=99.33  E-value=2.6e-12  Score=83.85  Aligned_cols=50  Identities=26%  Similarity=0.485  Sum_probs=47.2

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      +++|..|.++|||+++| |++||+|++|||+++.++++.++..++++.+..
T Consensus        28 ~v~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~   77 (89)
T 2q3g_A           28 PLSISRLTPGGKAAQAG-VAVGDWVLSIDGENAGSLTHIEAQNKIRACGER   77 (89)
T ss_dssp             EEEEEEECTTSHHHHTT-CCTTCEEEEETTEEGGGCCHHHHHHHHHTCTTE
T ss_pred             CEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCE
Confidence            78999999999999999 999999999999999999999999999987655

>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.33  E-value=4.9e-12  Score=86.72  Aligned_cols=52  Identities=31%  Similarity=0.574  Sum_probs=49.4

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .+++|..|.++|||+++|+|++||+|++|||+++.+++|.+++.+++..+..
T Consensus        50 ~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~~g~~  101 (117)
T 2ehr_A           50 KGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNASHSEAVEAIKNAGNP  101 (117)
T ss_dssp             CSEEEEEECSSSTTTSSCSCCTTCEEEEESSCBCTTCCHHHHHHHHHTSCSS
T ss_pred             CCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence            3899999999999999999999999999999999999999999999987776

>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.33  E-value=2.2e-12  Score=86.57  Aligned_cols=52  Identities=23%  Similarity=0.372  Sum_probs=48.4

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcC--CCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLT--PAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~--~~~   94 (175)
                      .+++|..|.++|||+++|+|++||+|++|||+++.+++|.+++++|+..  +..
T Consensus        34 ~~~~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~g~~   87 (103)
T 1uep_A           34 QPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQ   87 (103)
T ss_dssp             SCCBEEEECTTSTTGGGTCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTE
T ss_pred             CCeEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCc
Confidence            4789999999999999999999999999999999999999999999986  455

>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A

Probab=99.33  E-value=3.6e-12  Score=83.90  Aligned_cols=52  Identities=33%  Similarity=0.592  Sum_probs=48.8

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .+++|..|.++|||+++|+|++||+|++|||+++.++++.++..+++..+..
T Consensus        33 ~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~   84 (94)
T 2fe5_A           33 NSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDM   84 (94)
T ss_dssp             CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHTCCSE
T ss_pred             CCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence            4899999999999999999999999999999999999999999999987665

>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A

Probab=99.33  E-value=1.7e-12  Score=86.38  Aligned_cols=52  Identities=23%  Similarity=0.344  Sum_probs=48.7

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .+++|..|.++|||+++|+|++||+|++|||+++.+++++++.++|+..+..
T Consensus        36 ~gv~V~~V~~gspA~~aG~L~~GD~Il~ING~~v~~~~~~~~~~~l~~~~~~   87 (97)
T 2ejy_A           36 QSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMKETKGM   87 (97)
T ss_dssp             CCEEEEEECSSSHHHHHTCCCTTCEEEEETTBCCCSSCSHHHHHHHHHCCEE
T ss_pred             CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence            4899999999999999999999999999999999999999999999987554

>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}

Probab=99.33  E-value=2.7e-12  Score=84.99  Aligned_cols=52  Identities=27%  Similarity=0.495  Sum_probs=48.4

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .+++|..|.++|||+++|+|++||+|++|||+++.++++.++..+|++.+..
T Consensus        32 ~~~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~   83 (97)
T 2jil_A           32 RPVVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQE   83 (97)
T ss_dssp             EEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHHSCSE
T ss_pred             CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence            3789999999999999999999999999999999999999999999985555

>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A

Probab=99.33  E-value=3.3e-12  Score=83.47  Aligned_cols=51  Identities=22%  Similarity=0.502  Sum_probs=47.8

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .+++|..|.++|||+++| |++||+|++|||+++.+++|.++..+|+..+..
T Consensus        28 ~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~   78 (90)
T 2he4_A           28 PGQYIRSVDPGSPAARSG-LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDE   78 (90)
T ss_dssp             SSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTSCHHHHHHHHTTSSSE
T ss_pred             CCEEEEEECCCChHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCc
Confidence            389999999999999999 999999999999999999999999999987555

>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}

Probab=99.33  E-value=4.3e-12  Score=82.55  Aligned_cols=50  Identities=20%  Similarity=0.398  Sum_probs=47.0

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      +++|..|.++|||+++| |++||+|++|||+++.++++.++..+++..+..
T Consensus        28 ~~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~   77 (88)
T 2uzc_A           28 PLTISSLKDGGKAAQAN-VRIGDVVLSIDGINAQGMTHLEAQNKIKGCTGS   77 (88)
T ss_dssp             EEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCCSE
T ss_pred             CeEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCe
Confidence            78999999999999999 999999999999999999999999999987555

>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.33  E-value=2.8e-12  Score=86.25  Aligned_cols=52  Identities=31%  Similarity=0.523  Sum_probs=49.2

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .+++|..|.++|||+++|+|++||+|++|||+++.++++.+++.+++..+..
T Consensus        38 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~g~~   89 (105)
T 1wha_A           38 AGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAASPT   89 (105)
T ss_dssp             CSCEEEECCTTSSHHHHSSCCTTCEEEEESSCBCTTCCHHHHHHHHTSCCSC
T ss_pred             CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence            4899999999999999999999999999999999999999999999988666

>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A

Probab=99.32  E-value=3.9e-12  Score=84.89  Aligned_cols=52  Identities=40%  Similarity=0.602  Sum_probs=48.8

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .+++|..|.++|||+++|+|++||+|++|||+++.++++.++..++++.+..
T Consensus        37 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~   88 (101)
T 2jik_A           37 SGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYA   88 (101)
T ss_dssp             CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHTCCSE
T ss_pred             CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCe
Confidence            4899999999999999999999999999999999999999999999987655

>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}

Probab=99.32  E-value=4.3e-12  Score=84.16  Aligned_cols=52  Identities=54%  Similarity=0.883  Sum_probs=48.9

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .+++|..|.++|||+++|+|++||+|++|||+++.++++.++..+++..+..
T Consensus        30 ~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~   81 (98)
T 2opg_A           30 GAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQTPQR   81 (98)
T ss_dssp             CSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSE
T ss_pred             CCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCe
Confidence            4899999999999999999999999999999999999999999999987755

>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}

Probab=99.32  E-value=5e-12  Score=84.52  Aligned_cols=48  Identities=21%  Similarity=0.405  Sum_probs=45.0

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLT   91 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~   91 (175)
                      +++|..|.++|||+++|.|++||+|++|||+++.+.+++++.++|+..
T Consensus        38 ~~~V~~V~~~spA~~~ggl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~   85 (101)
T 2yt7_A           38 TAVIANLLHGGPAERSGALSIGDRLTAINGTSLVGLPLAACQAAVRET   85 (101)
T ss_dssp             CEEEEEECTTSTTGGGSSCCTTCEEEEESSCBCTTSCHHHHHHHHHHT
T ss_pred             CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            689999999999999655999999999999999999999999999984

>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A

Probab=99.32  E-value=4.2e-12  Score=84.17  Aligned_cols=52  Identities=17%  Similarity=0.394  Sum_probs=48.1

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .+++|..|.++|||+++|+|++||+|++|||+++.++++.++..+++..+..
T Consensus        30 ~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g~~   81 (97)
T 1n7e_A           30 DPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGET   81 (97)
T ss_dssp             SCCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSE
T ss_pred             CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence            4889999999999999999999999999999999999999999999965555

>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}

Probab=99.32  E-value=4.6e-12  Score=81.87  Aligned_cols=49  Identities=22%  Similarity=0.358  Sum_probs=46.6

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTP   92 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~   92 (175)
                      +++|..|.++|||+++|+|++||+|++|||+++.++++.++.+++++..
T Consensus        26 ~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~   74 (85)
T 2i04_A           26 FLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIP   74 (85)
T ss_dssp             CEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTSC
T ss_pred             CEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            6899999999999999999999999999999999999999999999863

>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1

Probab=99.31  E-value=6.2e-12  Score=84.15  Aligned_cols=52  Identities=31%  Similarity=0.583  Sum_probs=47.9

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .+++|..|.++|||+++|+|++||+|++|||+++.++++.++..+|++.+..
T Consensus        39 ~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~   90 (103)
T 2fcf_A           39 RGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNP   90 (103)
T ss_dssp             --EEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSS
T ss_pred             CCEEEEEeCCCCcHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCc
Confidence            5899999999999999999999999999999999999999999999987666

>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}

Probab=99.31  E-value=5.1e-12  Score=88.64  Aligned_cols=50  Identities=18%  Similarity=0.359  Sum_probs=48.0

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      |++|..|.++|||+++| |++||+|++|||+++.+++|.+++.++++.+..
T Consensus        66 gv~V~~V~~gspA~~aG-L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~g~~  115 (132)
T 3l4f_D           66 LQYLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNT  115 (132)
T ss_dssp             SEEEEEECTTSGGGGGT-CCTTCEEEEESSSBCTTSCHHHHHHHHHHTTTE
T ss_pred             CEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCE
Confidence            79999999999999999 999999999999999999999999999997776

>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1

Probab=99.31  E-value=3.6e-12  Score=84.54  Aligned_cols=51  Identities=37%  Similarity=0.589  Sum_probs=48.1

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      +++|..|.++|||+++|+|++||+|++|||+++.++++.++..++++.+..
T Consensus        38 g~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~   88 (98)
T 1ihj_A           38 GIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFK   88 (98)
T ss_dssp             EEEEEEECTTSHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHHSCSE
T ss_pred             CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCe
Confidence            789999999999999999999999999999999999999999999986555

>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1

Probab=99.31  E-value=4.4e-12  Score=83.15  Aligned_cols=50  Identities=18%  Similarity=0.292  Sum_probs=47.1

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      +++|..|.++|||+++| |++||+|++|||+++.++++.++..++++.+..
T Consensus        25 ~~~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~   74 (91)
T 2f5y_A           25 PVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWKCVELAHEIRSCPSE   74 (91)
T ss_dssp             SCEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCSSE
T ss_pred             CEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence            68999999999999999 999999999999999999999999999986665

>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1

Probab=99.31  E-value=5e-12  Score=82.73  Aligned_cols=51  Identities=22%  Similarity=0.316  Sum_probs=47.5

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .|++|..|.++|||+++| |++||+|++|||+.+.++++.++..++++.+..
T Consensus        32 ~gv~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~   82 (91)
T 1m5z_A           32 KGVYVKNIRPAGPGDLGG-LKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNK   82 (91)
T ss_dssp             SCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTSTTE
T ss_pred             CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCE
Confidence            489999999999999999 999999999999999999999999999876655

>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A

Probab=99.31  E-value=4.9e-12  Score=88.16  Aligned_cols=51  Identities=20%  Similarity=0.374  Sum_probs=48.8

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      |++|..|.++|||+++|.|++||+|++|||+++.+.+|.+++.+++..+..
T Consensus        66 gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~~~~  116 (128)
T 1nf3_C           66 GIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRN  116 (128)
T ss_dssp             EEEEEEECTTCHHHHHTCCCTTCEEEEETTEESTTCCHHHHHHHHHHTTTS
T ss_pred             CEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence            799999999999999998999999999999999999999999999988777

>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}

Probab=99.31  E-value=3.1e-12  Score=89.10  Aligned_cols=51  Identities=39%  Similarity=0.579  Sum_probs=48.5

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecC-CCCHHHHHHHHHcCCCC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFR-NITHAKAMAHLRLTPAK   94 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~-~~~~~~a~~~lk~~~~~   94 (175)
                      ++||..|.++|||+++|+|++||+|++|||+++. +++|.+++.+|+..+..
T Consensus        55 gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~~l~~~~~~  106 (128)
T 2db5_A           55 DIFVKDVQPGSVADRDQRLKENDQILAINHTPLDQNISHQQAIALLQQTTGS  106 (128)
T ss_dssp             EEEEECCCTTSHHHHTCCCCSSCBEEEESSCBCSTTSCHHHHHHHHHHCCSE
T ss_pred             CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCCHHHHHHHHHcCCCe
Confidence            7999999999999999999999999999999997 99999999999997666

>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}

Probab=99.30  E-value=3e-12  Score=82.43  Aligned_cols=50  Identities=16%  Similarity=0.214  Sum_probs=47.2

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      +++|..|.++|||+++| |++||+|++|||+++.+++|.++..+++..+..
T Consensus        24 ~~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~   73 (83)
T 2kv8_A           24 PCVLSCVMRGSPADFVG-LRAGDQILAVNEINVKKASHEDVVKLIGKCSGV   73 (83)
T ss_dssp             SCBCCBCCTTSTTTTTT-CCTTCEEEEETTEECSSCCHHHHHHHHTTCSSC
T ss_pred             CeEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCe
Confidence            78999999999999999 999999999999999999999999999877666

>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}

Probab=99.30  E-value=7e-12  Score=86.88  Aligned_cols=52  Identities=31%  Similarity=0.583  Sum_probs=49.5

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .|++|..|.++|||+++|+|++||+|++|||+++.+++++++..+|+..+..
T Consensus        59 ~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~  110 (123)
T 2iwq_A           59 RGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNP  110 (123)
T ss_dssp             CSEEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSS
T ss_pred             CCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence            5899999999999999999999999999999999999999999999988766

>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A

Probab=99.30  E-value=5.3e-12  Score=83.92  Aligned_cols=50  Identities=22%  Similarity=0.301  Sum_probs=47.3

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      |++|..|.++|||+++| |++||+|++|||+++.+++|.++..++++.+..
T Consensus        35 g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~   84 (99)
T 3khf_A           35 HHVVWSVEDGSPAQEAG-LRAGDLITHINGESVLGLVHMDVVELLLKSGNK   84 (99)
T ss_dssp             EEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHHSCSE
T ss_pred             CeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCCCE
Confidence            66899999999999999 999999999999999999999999999987776

>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A

Probab=99.30  E-value=4.7e-12  Score=82.75  Aligned_cols=52  Identities=35%  Similarity=0.468  Sum_probs=47.7

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .+++|..|.++|||+++|.|++||+|++|||+++.++++.+++.+++..+..
T Consensus        30 ~g~~V~~V~~~spA~~aggl~~GD~I~~ing~~v~~~~~~~~~~~~~~~~~~   81 (90)
T 1qav_A           30 MPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKE   81 (90)
T ss_dssp             EEEEEEEECTTSHHHHTTCCCTTEEEEEETTEECTTCCHHHHHHHHHTCCSE
T ss_pred             CCEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCe
Confidence            3789999999999999933999999999999999999999999999987666

>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A

Probab=99.30  E-value=4.3e-12  Score=85.56  Aligned_cols=50  Identities=24%  Similarity=0.398  Sum_probs=47.4

Q ss_pred             CeEEEEecCCCcccccC-CcCCCCEEEEECCeecCCCCHHHHHHHHHcCCC
Q psy1521          44 GILVHDIYPEGAAAKDA-RLKFGDQILELTGEDFRNITHAKAMAHLRLTPA   93 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G-~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~   93 (175)
                      +++|..|.++|||+++| +|++||+|++|||+++.+++|.+++.++++.+.
T Consensus        44 ~~~V~~V~~~spA~~aG~rL~~GD~Il~ing~~v~~~~~~~~~~~i~~~~~   94 (107)
T 3nfk_A           44 PVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCE   94 (107)
T ss_dssp             EEEEEEECTTSHHHHSSSCCCTTCEEEEETTEECTTCCHHHHHHHHHCGGG
T ss_pred             CeEEEEECCCCchHHcCCccCCCCEEEEECCEECCCCCHHHHHHHHHhccc
Confidence            68999999999999999 699999999999999999999999999998765

>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A

Probab=99.30  E-value=5e-12  Score=87.70  Aligned_cols=51  Identities=16%  Similarity=0.319  Sum_probs=49.0

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      +++|..|.++|||+++|+|++||+|++|||+++.+++|.++..++++.+..
T Consensus        46 ~~~V~~v~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~~   96 (125)
T 3hpk_A           46 CLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGE   96 (125)
T ss_dssp             SEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHSCSE
T ss_pred             CEEEEEeCCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence            789999999999999999999999999999999999999999999998777

>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*

Probab=99.30  E-value=5.9e-12  Score=82.42  Aligned_cols=51  Identities=25%  Similarity=0.373  Sum_probs=47.3

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .+++|..|.++|||+++| |++||+|++|||+++.++++.++..++++.+..
T Consensus        27 ~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~   77 (91)
T 2pkt_A           27 QPLAISRVTPGSKAALAN-LCIGDVITAIDGENTSNMTHLEAQNRIKGCTDN   77 (91)
T ss_dssp             EEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCSSE
T ss_pred             CCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence            378999999999999999 999999999999999999999999999985555

>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}

Probab=99.30  E-value=5.7e-12  Score=83.31  Aligned_cols=50  Identities=18%  Similarity=0.412  Sum_probs=47.1

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      +++|..|.++|||+++| |++||+|++|||+++.++++.++..+++..+..
T Consensus        31 g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~   80 (96)
T 2v90_A           31 GQFLWEVDPGLPAKKAG-MQAGDRLVAVAGESVEGLGHEETVSRIQGQGSC   80 (96)
T ss_dssp             EEEEEEECTTSHHHHTT-CCTTEEEEEETTEECTTCCHHHHHHHHHTTTTE
T ss_pred             CeEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCE
Confidence            78999999999999999 999999999999999999999999999987545

>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}

Probab=99.30  E-value=2.4e-12  Score=84.12  Aligned_cols=50  Identities=26%  Similarity=0.452  Sum_probs=47.2

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPA   93 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~   93 (175)
                      +++|..|.++|||+++|+|++||+|++|||+++.+.++.++..++++.+.
T Consensus        28 ~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~   77 (90)
T 2q9v_A           28 PIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVVQLMQQAAK   77 (90)
T ss_dssp             CEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence            68999999999999999999999999999999999999999999987653

>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A

Probab=99.30  E-value=5.2e-12  Score=81.99  Aligned_cols=50  Identities=30%  Similarity=0.527  Sum_probs=47.0

Q ss_pred             CeEEEEecCCCcccc-cCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          44 GILVHDIYPEGAAAK-DARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        44 gi~V~~v~~gg~A~~-~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      +++|..|.++|||++ +| |++||+|++|||+++.+++|.+++.++++++..
T Consensus        29 ~~~V~~V~~gspA~~~ag-l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~   79 (87)
T 4e34_A           29 PILISEIHPGQPADRCGG-LHVGDAILAVNGVNLRDTKHKEAVTILSQQRGE   79 (87)
T ss_dssp             EEEEEEECTTSHHHHHSC-CCTTEEEEEETTEECTTCCHHHHHHHHHHCCSE
T ss_pred             CEEEEEECCCCHHHhcCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence            689999999999999 58 999999999999999999999999999987766

>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.30  E-value=3e-12  Score=86.53  Aligned_cols=52  Identities=38%  Similarity=0.651  Sum_probs=49.2

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .+++|..|.++|||+++|+|++||+|++|||+++.+++|.+++.+++..+..
T Consensus        42 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~   93 (108)
T 1q7x_A           42 GGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQV   93 (108)
T ss_dssp             CCCBEEEECTTSTHHHHTCCCSSCEEEEETTEECBSCTTSHHHHHHHHTTSE
T ss_pred             CCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence            4899999999999999999999999999999999999999999999997666

>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens}

Probab=99.30  E-value=4.3e-12  Score=85.18  Aligned_cols=50  Identities=30%  Similarity=0.505  Sum_probs=47.7

Q ss_pred             CeEEEEecCCCccccc-CCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          44 GILVHDIYPEGAAAKD-ARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~-G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      +++|..|.++|||+++ | |++||+|++|||+++.+++|.+++.++++.+..
T Consensus        36 ~~~V~~V~~~s~A~~a~g-L~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~~   86 (103)
T 2dc2_A           36 PILISEIHPGQPADRCGG-LHVGDAILAVNGVNLRDTKHKEAVTILSQQRGE   86 (103)
T ss_dssp             EEEEEEECTTSHHHHHTC-CCSSEEEEEETTEESTTSCHHHHHHHHHHCCSE
T ss_pred             CEEEEEECCCCHHHHhCC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCc
Confidence            7899999999999996 7 999999999999999999999999999998777

>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.29  E-value=5.6e-12  Score=85.43  Aligned_cols=52  Identities=31%  Similarity=0.549  Sum_probs=49.0

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .+++|..|.++|||+++|+|++||+|++|||+++.++++.+++.+++..+..
T Consensus        36 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~   87 (110)
T 1um1_A           36 PGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHGGKK   87 (110)
T ss_dssp             SSEEEEEECTTSHHHHHSCCCTTCEEEEESSCBCSSCCHHHHHHHHHTCCSE
T ss_pred             CCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence            4899999999999999999999999999999999999999999999987665

>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.29  E-value=3.8e-12  Score=88.21  Aligned_cols=52  Identities=37%  Similarity=0.610  Sum_probs=49.3

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .+++|..|.++|||+++|+|++||+|++|||+++.+++|.+++.+++..+..
T Consensus        51 ~gv~V~~V~~~spA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~~~~~  102 (124)
T 2daz_A           51 MSIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNASAIIKTAPSK  102 (124)
T ss_dssp             CCEEEEEECTTSHHHHHTCCCTTCEECEESSCBCTTSCHHHHHHHHHHSCSE
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence            4899999999999999999999999999999999999999999999988766

>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}

Probab=99.29  E-value=3.3e-12  Score=87.53  Aligned_cols=52  Identities=37%  Similarity=0.533  Sum_probs=48.8

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecC-CCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFR-NITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~-~~~~~~a~~~lk~~~~~   94 (175)
                      .|++|..|.++|||+++|+|++||+|++|||+++. ++++.+++.+++..+..
T Consensus        49 ~gv~V~~V~~~spA~~aG~l~~GD~Il~ing~~v~~~~~~~~~~~~l~~~~~~  101 (117)
T 2o2t_A           49 LGIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITHQQAISILQKAKDT  101 (117)
T ss_dssp             EEEEECCCCTTSHHHHHCCCCTTCEEEEETTEECCTTSCHHHHHHHHHHCCSE
T ss_pred             CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCCHHHHHHHHHcCCCE
Confidence            38999999999999999999999999999999998 89999999999987666

>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.29  E-value=7e-12  Score=84.09  Aligned_cols=52  Identities=29%  Similarity=0.533  Sum_probs=48.5

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .+++|..|.+++||+++|+|++||+|++|||+++.++++.+++.+++..+..
T Consensus        38 ~~v~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~   89 (104)
T 2djt_A           38 TPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERIRAGGPQ   89 (104)
T ss_dssp             CCCEEEEECTTCHHHHHCSCCTTCBEEEETTEECTTCCHHHHHHHHHHTCSE
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence            4789999999999999999999999999999999999999999999986655

>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens}

Probab=99.28  E-value=8.7e-12  Score=84.90  Aligned_cols=52  Identities=25%  Similarity=0.547  Sum_probs=48.8

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .+++|..|.++|||+++|+|++||+|++|||+++.++++.++..+++..+..
T Consensus        49 ~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~g~~  100 (112)
T 2r4h_A           49 MDLYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKHSRAIELIKNGGRR  100 (112)
T ss_dssp             CCEEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTE
T ss_pred             CCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence            4899999999999999999999999999999999999999999999986665

>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.28  E-value=8.9e-12  Score=86.25  Aligned_cols=50  Identities=26%  Similarity=0.411  Sum_probs=47.2

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTP   92 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~   92 (175)
                      .+++|..|.++|||+++|+|++||+|++|||+++.+++|.++..+|++..
T Consensus        44 ~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~   93 (123)
T 1ueq_A           44 EFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVP   93 (123)
T ss_dssp             CCCEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTSCHHHHHHHHHTSC
T ss_pred             CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            36999999999999999999999999999999999999999999999854

>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A

Probab=99.28  E-value=1.1e-11  Score=81.84  Aligned_cols=50  Identities=38%  Similarity=0.624  Sum_probs=46.9

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .+++|..|.++|||++ | |++||+|++|||+++.+++|.+++.+++..+..
T Consensus        35 ~gv~V~~V~~~spA~~-g-L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~   84 (95)
T 1mfg_A           35 DGIFVTRVQPEGPASK-L-LQPGDKIIQANGYSFINIEHGQAVSLLKTFQNT   84 (95)
T ss_dssp             CCEEEEEECTTSTTTT-T-CCTTCEEEEETTEECTTCBHHHHHHHHHHCCSE
T ss_pred             CCEEEEEECCCCchhh-C-CCCCCEEEEECCEEcCCCCHHHHHHHhhcCCCe
Confidence            4899999999999999 8 999999999999999999999999999977666

>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.28  E-value=4.7e-12  Score=85.98  Aligned_cols=52  Identities=33%  Similarity=0.578  Sum_probs=48.7

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .+++|..|.++|||+++|+|++||+|++|||+++.++++.++..++++.+..
T Consensus        38 ~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g~~   89 (111)
T 2dlu_A           38 SGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVLRNCGNS   89 (111)
T ss_dssp             SSBEEEEECTTSSHHHHTCCCSSCEEEEESSCCCTTSCHHHHHHHHHHHCSE
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCe
Confidence            3899999999999999999999999999999999999999999999986655

>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.28  E-value=6.2e-12  Score=86.62  Aligned_cols=52  Identities=40%  Similarity=0.602  Sum_probs=49.0

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .+++|..|.++|||+++|+|++||+|++|||+++.+++|.+++.+++..+..
T Consensus        47 ~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~~g~~   98 (120)
T 2eno_A           47 SGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYA   98 (120)
T ss_dssp             CSEEEEEECSSSHHHHSCCSCTTCEEEEETTEECCSCCHHHHHHHHHHHCSE
T ss_pred             CCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence            4899999999999999999999999999999999999999999999987666

>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.28  E-value=7.9e-12  Score=82.04  Aligned_cols=52  Identities=29%  Similarity=0.479  Sum_probs=48.1

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .+++|..|.++|||+++|.|++||+|++|||+++.++++.++..+++..+..
T Consensus        30 ~~~~V~~V~~~spA~~aGgl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~   81 (93)
T 2dkr_A           30 SPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGS   81 (93)
T ss_dssp             CCCEEEEECTTSHHHHHCCCCTTCBEEEETTEECTTSCHHHHHHHHHHCCSE
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCc
Confidence            4899999999999999955999999999999999999999999999987666

>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.28  E-value=1.2e-11  Score=81.10  Aligned_cols=51  Identities=24%  Similarity=0.347  Sum_probs=47.6

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .+++|..|.++|||+++|.|++||+|++|||+++ +.+++++.++|++.+..
T Consensus        29 ~~v~V~~V~~~spA~~ag~L~~GD~I~~ing~~v-~~~~~~~~~~l~~~~~~   79 (91)
T 2e7k_A           29 GELVIARILHGGMVAQQGLLHVGDIIKEVNGQPV-GSDPRALQELLRNASGS   79 (91)
T ss_dssp             SSEEEEEECSSSHHHHHCCCCTTCEEEEETTEEC-TTCHHHHHHHHHTCCSS
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEEC-CCCHHHHHHHHHcCCCe
Confidence            5899999999999999877999999999999999 88999999999987666

>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A

Probab=99.28  E-value=8.2e-12  Score=87.15  Aligned_cols=49  Identities=22%  Similarity=0.358  Sum_probs=47.0

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTP   92 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~   92 (175)
                      +++|..|.++|||+++|+|++||+|++|||+++.+++|.+++++|++..
T Consensus        44 ~v~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~~   92 (129)
T 2kpk_A           44 FLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIP   92 (129)
T ss_dssp             EEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTSCHHHHHHHHHHSC
T ss_pred             CEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            5899999999999999999999999999999999999999999999874

>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A

Probab=99.27  E-value=9.8e-12  Score=82.24  Aligned_cols=51  Identities=18%  Similarity=0.219  Sum_probs=47.9

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .+++|..|.++|||+++| |++||+|++|||+++.+++|+++..+|++.+..
T Consensus        37 ~~~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~   87 (96)
T 2ego_A           37 MVTFVARVHESSPAQLAG-LTPGDTIASVNGLNVEGIRHREIVDIIKASGNV   87 (96)
T ss_dssp             EEEEEEEECTTCHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHHTTTE
T ss_pred             CCeEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCe
Confidence            378999999999999999 999999999999999999999999999987655

>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A

Probab=99.27  E-value=8.3e-12  Score=83.63  Aligned_cols=52  Identities=35%  Similarity=0.518  Sum_probs=49.0

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .+++|..|.++|||+++|+|++||+|++|||+++.++++.++..+++..+..
T Consensus        35 ~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~   86 (104)
T 3i4w_A           35 EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQT   86 (104)
T ss_dssp             CCEEEEEECTTSHHHHHCCCCTTEEEEEETTEECTTCCHHHHHHHHHTSCSE
T ss_pred             CCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence            3899999999999999999999999999999999999999999999987766

>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}

Probab=99.27  E-value=1.1e-11  Score=81.16  Aligned_cols=52  Identities=25%  Similarity=0.414  Sum_probs=48.2

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .+++|..|.++|||+++|+|++||+|++|||+++.++++.++..++++.+..
T Consensus        23 ~gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~   74 (92)
T 3cyy_A           23 SHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGK   74 (92)
T ss_dssp             EEEEEEEECTTCHHHHSCCCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTE
T ss_pred             CCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCc
Confidence            4789999999999999999999999999999999988999999999986655

>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.27  E-value=4.8e-12  Score=85.01  Aligned_cols=47  Identities=28%  Similarity=0.333  Sum_probs=45.4

Q ss_pred             eEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcC
Q psy1521          45 ILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLT   91 (175)
Q Consensus        45 i~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~   91 (175)
                      +||..|.+++||+++|+|++||+|++|||+++.+++|++++++|++.
T Consensus        34 ~~I~~v~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~   80 (103)
T 1ufx_A           34 PRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEA   80 (103)
T ss_dssp             CEEEEECTTSHHHHHCSSCTTCBCCEETTEECTTCBHHHHHHHHHHH
T ss_pred             EEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHh
Confidence            49999999999999999999999999999999999999999999985

>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}

Probab=99.27  E-value=5.9e-12  Score=85.02  Aligned_cols=52  Identities=27%  Similarity=0.431  Sum_probs=48.4

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .+++|..|.++|||+++|+|++||+|++|||+++.++++.++..+++..+..
T Consensus        44 ~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g~~   95 (108)
T 2jre_A           44 TGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMAQSDVVEVLRNAGNP   95 (108)
T ss_dssp             CCCEEEEECTTSHHHHHSSCCSSEEEEEETTEECTTSCHHHHHHHHHHHCSE
T ss_pred             CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence            3899999999999999999999999999999999999999999999985555

>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.27  E-value=1.2e-11  Score=82.98  Aligned_cols=50  Identities=32%  Similarity=0.599  Sum_probs=47.0

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .+++|..|.+++||+++| |++||+|++|||+.+.++++++++.+|+. +..
T Consensus        41 ~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~-~~~   90 (104)
T 1wi2_A           41 LGIFISKVIPDSDAHRAG-LQEGDQVLAVNDVDFQDIEHSKAVEILKT-ARE   90 (104)
T ss_dssp             CCCEEEEECTTSHHHHHT-CCTTCEEEEETTEECSSCCHHHHHHHHHH-SSS
T ss_pred             CCEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhC-CCE
Confidence            479999999999999999 99999999999999999999999999998 555

>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.27  E-value=9.7e-12  Score=81.96  Aligned_cols=51  Identities=24%  Similarity=0.259  Sum_probs=47.5

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .+++|..|.+++||+++| |++||+|++|||+++.++++.++..+++..+..
T Consensus        32 ~~v~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~   82 (94)
T 2eeg_A           32 APLTISRVHAGSKAALAA-LCPGDLIQAINGESTELMTHLEAQNRIKGCHDH   82 (94)
T ss_dssp             SCCEECCCCSSSHHHHTT-CCTTCEEEEETTEETTTCCHHHHHHHHHTCCSC
T ss_pred             CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence            378999999999999999 999999999999999999999999999886666

>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*

Probab=99.27  E-value=6.8e-12  Score=82.70  Aligned_cols=50  Identities=22%  Similarity=0.414  Sum_probs=48.0

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      +++|..|.++|||+++| |++||+|++|||+++.+++|+++..+|++.+..
T Consensus        30 ~~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~   79 (95)
T 3r68_A           30 GQIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQ   79 (95)
T ss_dssp             SEEEECCCTTSHHHHHT-CCTTEEEEEETTEECTTCCHHHHHHHHHTTTTE
T ss_pred             CEEEEEECCCCHHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCe
Confidence            89999999999999999 999999999999999999999999999997766

>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.27  E-value=2.7e-12  Score=87.25  Aligned_cols=52  Identities=33%  Similarity=0.597  Sum_probs=48.9

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .+++|..|.++|||+++|+|++||+|++|||+++.+++|.+++.+++..+..
T Consensus        44 ~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~g~~   95 (111)
T 1uju_A           44 EGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRSVGDT   95 (111)
T ss_dssp             CCCEEEEECTTSHHHHHSSCCTTCBCCBBSSCBCTTSCHHHHHHHHSSCSSE
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence            3799999999999999999999999999999999999999999999987655

>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A*

Probab=99.26  E-value=1.2e-11  Score=83.65  Aligned_cols=50  Identities=18%  Similarity=0.359  Sum_probs=47.5

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      |++|..|.++|||+++| |++||+|++|||+++.+++|.++..++++.+..
T Consensus        46 gv~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~   95 (109)
T 1q3o_A           46 LQYLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNT   95 (109)
T ss_dssp             SEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHHTTTE
T ss_pred             CEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCE
Confidence            78999999999999999 999999999999999999999999999987665

>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A

Probab=99.26  E-value=1.4e-11  Score=82.48  Aligned_cols=51  Identities=29%  Similarity=0.476  Sum_probs=47.1

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .|++|..|.++|||+++| |++||+|++|||+++.+.+|+++..++++....
T Consensus        45 ~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~   95 (104)
T 3sfj_A           45 KGIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEE   95 (104)
T ss_dssp             CSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHTCTTCS
T ss_pred             CCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCC
Confidence            489999999999999999 999999999999999999999999999875443

>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.26  E-value=9e-12  Score=85.16  Aligned_cols=52  Identities=54%  Similarity=0.876  Sum_probs=48.9

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .+++|..|.++|||+++|+|++||+|++|||+++.++++.++..+++..+..
T Consensus        43 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~   94 (116)
T 2dm8_A           43 NAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEAITALRQTPQK   94 (116)
T ss_dssp             SSEECCCCCSSSHHHHHTCCCTTCEEEEETTEECSSSCHHHHHHHHHTCCSE
T ss_pred             CCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCe
Confidence            4899999999999999999999999999999999999999999999987755

>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A

Probab=99.26  E-value=1.3e-11  Score=83.66  Aligned_cols=49  Identities=39%  Similarity=0.649  Sum_probs=46.8

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLT   91 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~   91 (175)
                      .+++|..|.++|||+++|+|++||+|++|||+++.++++.++..+++..
T Consensus        39 ~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~   87 (111)
T 2koj_A           39 APIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLRST   87 (111)
T ss_dssp             SCEEEEEECSSSHHHHHCSSCTTCEEEEETTEECTTSCHHHHHHHHHHC
T ss_pred             cCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            4899999999999999999999999999999999999999999999985

>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.26  E-value=7.8e-12  Score=82.43  Aligned_cols=51  Identities=27%  Similarity=0.462  Sum_probs=47.6

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .+++|..|.++|||+++| |++||+|++|||+++.+++|.++..+++..+..
T Consensus        30 ~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~   80 (94)
T 1vb7_A           30 TPIIVTKVTERGKAEAAD-LRPGDIIVAINGQSAENMLHAEAQSKIRQSASP   80 (94)
T ss_dssp             EEEECCCBCTTSSHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCCSS
T ss_pred             CCeEEEEECCCCHHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCc
Confidence            378999999999999999 999999999999999999999999999987655

>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A

Probab=99.26  E-value=2.3e-11  Score=79.98  Aligned_cols=50  Identities=30%  Similarity=0.475  Sum_probs=45.5

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .+++|..|.++|||+++| |++||+|++|||+++.++++.+++..++ .+..
T Consensus        29 ~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~-~g~~   78 (93)
T 2dls_A           29 RIVLVQSVRPGGAAMKAG-VKEGDRIIKVNGTMVTNSSHLEVVKLIK-SGAY   78 (93)
T ss_dssp             SSCEEEEECSSSTTTTTT-CCSSCEEEEETTEECSSSCHHHHHHHHT-SSSE
T ss_pred             CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhhc-CCCE
Confidence            488999999999999999 9999999999999999999999888887 3555

>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A

Probab=99.26  E-value=1.9e-11  Score=79.96  Aligned_cols=51  Identities=25%  Similarity=0.424  Sum_probs=48.1

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .+++|..|.++|||+++| |++||+|++|||+++.++++.++..++++.+..
T Consensus        27 ~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~   77 (91)
T 1g9o_A           27 LGQYIRLVEPGSPAEKAG-LLAGDRLVEVNGENVEKETHQQVVSRIRAALNA   77 (91)
T ss_dssp             SSEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCSSE
T ss_pred             CCEEEEEECCCCHHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCc
Confidence            389999999999999999 999999999999999999999999999987665

>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A

Probab=99.26  E-value=4.6e-12  Score=82.99  Aligned_cols=51  Identities=18%  Similarity=0.292  Sum_probs=46.2

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .+++|..|.++|||+++| |++||+|++|||+++.+++++++..+|+..+..
T Consensus        27 ~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~   77 (91)
T 2vsp_A           27 PGSFIKEVQKGGPADLAG-LEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKN   77 (91)
T ss_dssp             SCCBC-CCCTTSHHHHTT-CCTTCEEEEETTEECTTSCHHHHHHHHTTSCSE
T ss_pred             CCeEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCE
Confidence            378999999999999999 999999999999999999999999999987444

>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0

Probab=99.26  E-value=7.7e-12  Score=84.16  Aligned_cols=51  Identities=25%  Similarity=0.319  Sum_probs=47.9

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .+++|..|.++|||+++| |++||+|++|||+++.+++|.++..++++.+..
T Consensus        26 ~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~   76 (106)
T 3ngh_A           26 DGHLIRVIEEGSPAEKAG-LLDGDRVLRINGVFVDKEEHAQVVELVRKSGNS   76 (106)
T ss_dssp             CSCEEECCCTTSHHHHTT-CCTTCEEEEETTEECTTSCHHHHHHHHHHTTTE
T ss_pred             CCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCE
Confidence            378999999999999999 999999999999999999999999999977666

>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}

Probab=99.25  E-value=1.8e-11  Score=80.91  Aligned_cols=51  Identities=29%  Similarity=0.549  Sum_probs=47.3

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .+++|..|.++|||+++| |++||+|++|||+++.+.++.++...++..+..
T Consensus        34 ~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~   84 (97)
T 2w4f_A           34 EGIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAEHHEAVEALRGAGTA   84 (97)
T ss_dssp             CSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTSCSE
T ss_pred             CCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCcCHHHHHHHHhCCCCe
Confidence            589999999999999999 999999999999999999999998888876666

>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A

Probab=99.25  E-value=1.5e-11  Score=78.47  Aligned_cols=52  Identities=25%  Similarity=0.414  Sum_probs=47.9

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .+++|..|.++|||+++|+|++||+|++|||+++.++++.++..++++....
T Consensus        21 ~gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~   72 (81)
T 2rcz_A           21 SHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGK   72 (81)
T ss_dssp             EEEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHHTSTTE
T ss_pred             CCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCe
Confidence            4789999999999999999999999999999999999999999999976555

>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.25  E-value=7.2e-12  Score=86.16  Aligned_cols=48  Identities=29%  Similarity=0.458  Sum_probs=44.9

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLT   91 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~   91 (175)
                      .++|.+|.++|||+++|.|++||+|++|||+++.+++|++++++|++.
T Consensus        44 ~i~I~~V~~gspA~~aggL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~   91 (118)
T 1v6b_A           44 KVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKA   91 (118)
T ss_dssp             SEEEEECCTTSHHHHHCSSCTTCEEEEESSCBCTTCBHHHHHHHHHHH
T ss_pred             CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHHh
Confidence            589999999999999944999999999999999999999999999865

>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.25  E-value=1.4e-11  Score=84.01  Aligned_cols=51  Identities=25%  Similarity=0.403  Sum_probs=47.9

Q ss_pred             CCeEEEEecCCCcccccCCc-CCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARL-KFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L-~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .+++|..|.++|||+++| | ++||+|++|||+.+.+++++++..+|+..+..
T Consensus        48 ~gv~V~~V~~~spA~~aG-ll~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~   99 (113)
T 1va8_A           48 DSVIISRIVKGGAAEKSG-LLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGT   99 (113)
T ss_dssp             SSEEEEEECTTSHHHHHT-CCCTTCEEEEETTEECTTCCHHHHHHHHHHCCEE
T ss_pred             CCEEEEEeCCCCHHHHcC-CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence            589999999999999999 6 99999999999999999999999999987765

>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.24  E-value=1.1e-11  Score=86.36  Aligned_cols=52  Identities=21%  Similarity=0.418  Sum_probs=48.9

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .+++|..|.++|||+++|+|++||+|++|||+++.++++.++..+|++.+..
T Consensus        46 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~   97 (129)
T 2dmz_A           46 SGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANHDVVEVLRNAGQV   97 (129)
T ss_dssp             CEEEEEEECTTSHHHHHTCCCSSCBEEEETTBCCTTCCHHHHHHHHHHCCSS
T ss_pred             CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence            4899999999999999999999999999999999999999999999996655

>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=99.24  E-value=1.1e-11  Score=85.24  Aligned_cols=52  Identities=29%  Similarity=0.592  Sum_probs=49.3

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .+++|..|.++|||+++|+|++||+|++|||+++.+++|.+++.+++..+..
T Consensus        42 ~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~~   93 (119)
T 1x6d_A           42 KVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAREP   93 (119)
T ss_dssp             SSCEEEEECSSSHHHHHTSSCTTCBCCEETTEECSSCCHHHHHHHHHHTTSS
T ss_pred             CCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCC
Confidence            3799999999999999999999999999999999999999999999988776

>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.24  E-value=1.7e-11  Score=82.00  Aligned_cols=51  Identities=22%  Similarity=0.399  Sum_probs=47.7

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .+++|..|.++|||+++| |++||+|++|||+++.++++.++..++++.+..
T Consensus        30 ~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~   80 (102)
T 2d90_A           30 KGQIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQ   80 (102)
T ss_dssp             SSEEEECCCTTSTTTTTT-CCTTCEEEEESSCBCTTSCHHHHHHHHHHSTTE
T ss_pred             CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCE
Confidence            389999999999999999 999999999999999999999999999987666

>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.24  E-value=2.5e-11  Score=82.20  Aligned_cols=51  Identities=29%  Similarity=0.549  Sum_probs=47.6

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .+++|..|.++|||+++| |++||+|++|||+.+.+.++.++...++..+..
T Consensus        46 ~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~   96 (110)
T 1x5q_A           46 EGIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAEHHEAVEALRGAGTA   96 (110)
T ss_dssp             CSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHSCCSE
T ss_pred             CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCcCHHHHHHHhhCCCCe
Confidence            489999999999999999 999999999999999999999999999886666

>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.23  E-value=2.8e-11  Score=82.51  Aligned_cols=50  Identities=24%  Similarity=0.355  Sum_probs=46.6

Q ss_pred             CeEEEEecCCCcccc-cCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          44 GILVHDIYPEGAAAK-DARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        44 gi~V~~v~~gg~A~~-~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      +++|..|.++|||++ +| |++||+|++|||+++.+++|.++..+|++.+..
T Consensus        44 ~~~V~~V~~~spA~~~ag-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~   94 (114)
T 1uew_A           44 PHKIGRIIDGSPADRCAK-LKVGDRILAVNGQSIINMPHADIVKLIKDAGLS   94 (114)
T ss_dssp             SCEEEEECTTCTTGGGSS-CCTTCBEEEETTBCTTTSCHHHHHHHHHHTTTE
T ss_pred             CeEEEEECCCChHHHhCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence            569999999999999 88 999999999999999999999999999985555

>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.23  E-value=5.1e-12  Score=84.51  Aligned_cols=51  Identities=31%  Similarity=0.629  Sum_probs=47.9

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      +++|..|.++|||+++|+|++||+|++|||+++.+++|.++..+++..+..
T Consensus        37 ~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~   87 (103)
T 1wfv_A           37 DLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSGGRR   87 (103)
T ss_dssp             EEECCCBCTTSHHHHHCSSCTTCEEEEETTEECSSCCHHHHHHHHHHHCSE
T ss_pred             CEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence            789999999999999999999999999999999999999999999966666

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A

Probab=99.23  E-value=2.9e-12  Score=104.98  Aligned_cols=91  Identities=21%  Similarity=0.361  Sum_probs=55.4

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCcccceeeeee
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKPCPTVPSEPNANATTGEKTTFYFHFQV  123 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (175)
                      +++|..|.++|||+++|+|++||+|++|||+++.+++|.+++.+++..+...                          .+
T Consensus       233 g~~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~~~~~--------------------------~v  286 (388)
T 3suz_A          233 TVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGLKNQT--------------------------QV  286 (388)
T ss_dssp             CCBCCCCCCSSHHHHTCCCCTTCEEEEETTEECSSCCSTTHHHHTTTCTTCS--------------------------CE
T ss_pred             CEEEEeeCCCCHHHHcCCCCCCCEEEEECCEEccCCCHHHHHHHHHhccCCC--------------------------cc
Confidence            4899999999999999999999999999999999999999999998864331                          27


Q ss_pred             eeeecccCCCCCCCCCceEEEEEE-eCCCCCcCEEEEcCcCCCceEEEeccC
Q psy1521         124 KLVVLRDTVTKEDDLLEFVDVELT-KKAGKGFGLSLVGRKQGPGVFISDLVS  174 (175)
Q Consensus       124 ~l~v~r~~~~~~~~~~~~~~v~l~-k~~~~~lGfsi~gg~~~~gi~I~~i~~  174 (175)
                      .|++.|....        +++++. +....+|||++.++      ||..|.|
T Consensus       287 ~l~v~r~~~~--------~~v~l~~~~~~~~lG~~i~~g------~I~~V~~  324 (388)
T 3suz_A          287 KLNIVSCPPV--------TTVLIKRPDLKYQLGFSVQNG------IICSLMR  324 (388)
T ss_dssp             EEEEEECCSC--------C---------------------------------
T ss_pred             cccccccccc--------ceeeEeecCCCCccceEEecC------EEEEeec
Confidence            8888876432        445552 23456799998753      5555543

>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.23  E-value=1.5e-11  Score=80.60  Aligned_cols=48  Identities=19%  Similarity=0.409  Sum_probs=45.4

Q ss_pred             EEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          46 LVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        46 ~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      +|..|.++|||+++| |++||+|++|||+++.+.++.++.++|++.+..
T Consensus        34 ~V~~V~~~spA~~aG-L~~GD~Il~Ing~~v~~~~~~~~~~~l~~~g~~   81 (90)
T 1y7n_A           34 IICSLMRGGIAERGG-VRVGHRIIEINGQSVVATPHEKIVHILSNAVGE   81 (90)
T ss_dssp             EEEEECTTSHHHHHT-CCSSCEEEEETTEECTTSCHHHHHHHHHHCCEE
T ss_pred             EEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence            899999999999999 999999999999999999999999999977655

>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.23  E-value=2.9e-11  Score=80.53  Aligned_cols=51  Identities=25%  Similarity=0.365  Sum_probs=47.2

Q ss_pred             hCCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        42 ~~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      ..+++|..|.++|||+++| |++||+|++|||+.+.++++.+++..++. +..
T Consensus        35 ~~gv~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~~-~~~   85 (100)
T 2eeh_A           35 GLGIFVSKVEEGSSAERAG-LCVGDKITEVNGLSLESTTMGSAVKVLTS-SSR   85 (100)
T ss_dssp             TCCEEEEEECTTSHHHHHT-CCSSCEEEEETTEECSSCCHHHHHHHHHS-CSS
T ss_pred             CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhhcC-CCE
Confidence            3589999999999999999 99999999999999999999999999987 555

>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A

Probab=99.23  E-value=1.5e-11  Score=82.39  Aligned_cols=50  Identities=38%  Similarity=0.624  Sum_probs=47.0

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .+++|..|.++|||++ | |++||+|++|||+++.++++.+++.+++..+..
T Consensus        43 ~gv~V~~V~~~spA~~-g-L~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~   92 (103)
T 1n7t_A           43 DGIFVTRVQPEGPASK-L-LQPGDKIIQANGYSFINIEHGQAVSLLKTFQNT   92 (103)
T ss_dssp             CSEECCCBSSSSTTSS-S-CCTTCEEEEETTEECSSCCHHHHHHHHHHCCSE
T ss_pred             CCEEEEEECCCCchHH-C-CCCCCEEEEECCEECCCCCHHHHHHHhhcCCCe
Confidence            4899999999999999 8 999999999999999999999999999987766

>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}

Probab=99.23  E-value=2.1e-11  Score=80.46  Aligned_cols=52  Identities=33%  Similarity=0.569  Sum_probs=48.3

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .+++|..|.++|||+++|+|++||+|++|||+++.++++.++..+++..+..
T Consensus        33 ~~~~V~~v~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~   84 (97)
T 2iwn_A           33 SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQT   84 (97)
T ss_dssp             CCCEEEEECTTCHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHTCCSE
T ss_pred             CCEEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence            4899999999999999999999999999999999999999999999886555

>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}

Probab=99.22  E-value=2e-11  Score=80.98  Aligned_cols=51  Identities=20%  Similarity=0.395  Sum_probs=47.4

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .+++|..|.++|||+++| |++||+|++|||+++.++++.++..+|++....
T Consensus        33 ~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~   83 (98)
T 2jxo_A           33 PGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDE   83 (98)
T ss_dssp             SCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTTTTE
T ss_pred             CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCc
Confidence            389999999999999999 999999999999999999999999999987544

>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.22  E-value=9e-12  Score=83.12  Aligned_cols=51  Identities=18%  Similarity=0.289  Sum_probs=47.7

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .+++|..|.+++||+++| |++||+|++|||+.+.++++.++..+++..+..
T Consensus        36 ~~~~V~~V~~~spA~~aG-L~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~   86 (100)
T 1whd_A           36 SPVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWKCVELAHEIRSCPSE   86 (100)
T ss_dssp             SSCBCCBCCTTSHHHHHT-CCSSCEEEEETTEECTTCCHHHHHHHHHHCSSE
T ss_pred             CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence            478999999999999999 999999999999999999999999999987666

>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}

Probab=99.22  E-value=1.3e-11  Score=84.17  Aligned_cols=51  Identities=25%  Similarity=0.319  Sum_probs=47.8

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .+++|..|.++|||+++| |++||+|++|||+++.+.++.++..++++.+..
T Consensus        38 ~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~   88 (114)
T 2edz_A           38 DGHLIRVIEEGSPAEKAG-LLDGDRVLRINGVFVDKEEHAQVVELVRKSGNS   88 (114)
T ss_dssp             CSCEEECCCTTCTTGGGT-CCTTCEEEEESSSBCSSSCHHHHHHHHHHTCSE
T ss_pred             CCeEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCE
Confidence            489999999999999999 999999999999999999999999999987655

>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens}

Probab=99.22  E-value=2.6e-11  Score=83.70  Aligned_cols=49  Identities=39%  Similarity=0.639  Sum_probs=46.6

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLT   91 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~   91 (175)
                      .+++|..|.++|||+++|+|++||+|++|||+++.+++++++.++++..
T Consensus        58 ~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~l~~~  106 (121)
T 2kom_A           58 APIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLRST  106 (121)
T ss_dssp             CCEEEEEECTTSHHHHHTCCCSSSEEEEETTEECTTSCHHHHHHHHHHC
T ss_pred             CCEEEEEECCCChHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcC
Confidence            4799999999999999999999999999999999999999999999975

>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.22  E-value=1.1e-11  Score=85.13  Aligned_cols=49  Identities=22%  Similarity=0.370  Sum_probs=46.3

Q ss_pred             CeEEEEecCCCccccc--CCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCC
Q psy1521          44 GILVHDIYPEGAAAKD--ARLKFGDQILELTGEDFRNITHAKAMAHLRLTPA   93 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~--G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~   93 (175)
                      +++|..|.++|||+++  | |++||+|++|||+++.+++|.+++.+++..+.
T Consensus        42 ~v~V~~V~~~spA~~a~gG-L~~GD~Il~ing~~v~~~~~~~~~~~~~~~~~   92 (119)
T 2cs5_A           42 PVIVSRVAPGTPADLCVPR-LNEGDQVVLINGRDIAEHTHDQVVLFIKASCE   92 (119)
T ss_dssp             EEEEEEECSSSTTTSSSSC-CCTTCEEEEETTBCTTSSCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCHHHHhhcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhccc
Confidence            6899999999999999  7 99999999999999999999999999998754

>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens}

Probab=99.22  E-value=3.6e-11  Score=81.57  Aligned_cols=50  Identities=22%  Similarity=0.219  Sum_probs=46.8

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      +++|..|.++|||+++| |++||+|++|||+++.+++++++.+++++.+..
T Consensus        45 ~v~V~~V~~gspA~~AG-L~~GD~Il~VnG~~v~~~~~~dv~~~i~~~~~~   94 (109)
T 2vsv_A           45 PVQVHFLDPYCSASVAG-AREGDYIVSIQLVDCKWLTLSEVMKLLKSFGED   94 (109)
T ss_dssp             SCEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTTTTS
T ss_pred             CeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCC
Confidence            67899999999999999 999999999999999999999999999987664

>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.22  E-value=1.2e-11  Score=82.84  Aligned_cols=50  Identities=18%  Similarity=0.396  Sum_probs=46.9

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      +++|..|.++|||+++| |++||+|++|||+++.++++.++..+++..+..
T Consensus        30 ~v~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~   79 (103)
T 1wf7_A           30 PLTISSLKDGGKASQAH-VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGS   79 (103)
T ss_dssp             EEEECCCCTTCHHHHTT-CCTTCBEEEETTEECSSCCHHHHHHHHHHCSSE
T ss_pred             CEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence            58999999999999999 999999999999999999999999999987666

>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.21  E-value=1.2e-11  Score=86.08  Aligned_cols=49  Identities=20%  Similarity=0.245  Sum_probs=46.0

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLT   91 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~   91 (175)
                      .+++|..|.++|||+++|+|++||+|++|||+++.+.+|.+++.+|++.
T Consensus        49 ~~v~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~s~~d~~~~l~~~   97 (126)
T 1wif_A           49 PYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNI   97 (126)
T ss_dssp             TEEEECCCCTTSSGGGCSSSCTTCBEEEESSSCCTTCCHHHHHHHHTSC
T ss_pred             CcEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcC
Confidence            3678999999999999999999999999999999989999999999974

>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.20  E-value=1.3e-11  Score=81.74  Aligned_cols=50  Identities=26%  Similarity=0.317  Sum_probs=46.5

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .+++|..|.++|||+ +| |++||+|++|||+++.+++|.+++.+++..+..
T Consensus        31 ~~~~V~~V~~~spA~-ag-L~~GD~Il~ing~~v~~~~~~~~~~~~~~~g~~   80 (96)
T 2edv_A           31 LPLTVVAVTAGGSAH-GK-LFPGDQILQMNNEPAEDLSWERAVDILREAEDS   80 (96)
T ss_dssp             SSCBCCCBCSSSSST-TT-SCTTCBEEEESSCBSTTCCHHHHHHHHHHCSSC
T ss_pred             CCeEEEEECCCCchh-hC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence            488999999999996 77 999999999999999999999999999987777

>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A

Probab=99.20  E-value=4.1e-11  Score=84.72  Aligned_cols=49  Identities=31%  Similarity=0.487  Sum_probs=46.3

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTP   92 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~   92 (175)
                      .|++|..|.++|||+++| |++||+|++|||+++.++++.++..+|++..
T Consensus        64 ~gv~V~~V~~~spA~~aG-L~~GD~I~~vng~~v~~~~~~~~~~~l~~~~  112 (139)
T 2vz5_A           64 KGIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTMVTHDQARKRLTKRS  112 (139)
T ss_dssp             CCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHCCTT
T ss_pred             CCEEEEEECCCCHHHHCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhCC
Confidence            589999999999999999 9999999999999999999999999998744

>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.20  E-value=1.5e-11  Score=82.38  Aligned_cols=50  Identities=28%  Similarity=0.390  Sum_probs=46.7

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      +++|..|.++|||+++| |++||+|++|||+.+.++++.++..+|+..+..
T Consensus        30 ~~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~   79 (103)
T 1v5l_A           30 PLVITRITPGSKAAAAN-LCPGDVILAIDGFGTESMTHADAQDRIKAASYQ   79 (103)
T ss_dssp             EEECSCBCTTSTTGGGT-CCTTCBEEEETTEECSSCCHHHHHHHHTTCCSE
T ss_pred             CeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCe
Confidence            68999999999999999 999999999999999999999999999987444

>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A

Probab=99.19  E-value=9.2e-11  Score=86.94  Aligned_cols=50  Identities=38%  Similarity=0.624  Sum_probs=47.7

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .|++|..|.++|||++ | |++||+|++|||+++.+++|.+++.+++..+..
T Consensus        24 ~g~~V~~v~~~spA~~-g-l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~   73 (195)
T 2qbw_A           24 DGIFVTRVQPEGPASK-L-LQPGDKIIQANGYSFINIEHGQAVSLLKTFQNT   73 (195)
T ss_dssp             CSEEEEEECTTSTTTT-T-CCTTCEEEEETTEECTTCCHHHHHHHHHHCCSE
T ss_pred             CCEEEEEECCCChHHh-C-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence            4899999999999999 8 999999999999999999999999999998776

>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A

Probab=99.19  E-value=1.7e-10  Score=86.81  Aligned_cols=96  Identities=15%  Similarity=0.169  Sum_probs=70.3

Q ss_pred             CeEEEEecCCCcccccCCcCCC-CEEEEECCeecCCCCHHHHHHHHHc-CCCCCCCCCCCCCCCCCCCCCCCcccceeee
Q psy1521          44 GILVHDIYPEGAAAKDARLKFG-DQILELTGEDFRNITHAKAMAHLRL-TPAKAKPCPTVPSEPNANATTGEKTTFYFHF  121 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~G-D~Il~VNG~~l~~~~~~~a~~~lk~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (175)
                      |++|..|.++|||+++| |++| |+|++|||+.+.++++... .+++. .+..                           
T Consensus        17 G~~V~~V~~~SpA~~AG-L~~G~D~I~~ing~~v~~~~~~~~-~~~~~~~g~~---------------------------   67 (209)
T 3rle_A           17 GYHVLRVQENSPGHRAG-LEPFFDFIVSINGSRLNKDNDTLK-DLLKANVEKP---------------------------   67 (209)
T ss_dssp             EEEEEEECTTSHHHHTT-CCTTTEEEEEETTEECCSSSSHHH-HHHHHTTTSC---------------------------
T ss_pred             EEEEEEECCCCHHHHCC-CCcCCeEEEEECCEECcCHHHHHH-HHHhcCCCCE---------------------------
Confidence            78999999999999999 9999 9999999999988765433 34443 3444                           


Q ss_pred             eeeeeecccCCCCCCCCCceEEEEEEeC----CCCCcCEEEEcCc----CCCceEEEeccCC
Q psy1521         122 QVKLVVLRDTVTKEDDLLEFVDVELTKK----AGKGFGLSLVGRK----QGPGVFISDLVSE  175 (175)
Q Consensus       122 ~v~l~v~r~~~~~~~~~~~~~~v~l~k~----~~~~lGfsi~gg~----~~~gi~I~~i~~~  175 (175)
                       +.+++.|+...      ..++++|...    ....||+++..-.    ...|++|..|.|.
T Consensus        68 -v~l~v~R~~~~------~~~~v~l~p~~~~~~~~~lGi~~~~~~~~~~~~~Gv~V~~V~~~  122 (209)
T 3rle_A           68 -VKMLIYSSKTL------ELRETSVTPSNLWGGQGLLGVSIRFCSFDGANENVWHVLEVESN  122 (209)
T ss_dssp             -EEEEEEETTTC------CEEEEEECCCSSSSSSSSSCEEEEEEECTTGGGSCEEEEEECTT
T ss_pred             -EEEEEEecCCc------eEEEEEEcccccccccCccceEEeecChhHccccceEEEEeCCC
Confidence             88998886432      3466776432    2346899987421    2368999998763

>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.19  E-value=1.5e-11  Score=82.72  Aligned_cols=51  Identities=22%  Similarity=0.547  Sum_probs=47.7

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .+++|..|.++|||+++| |++||+|++|||+++.+++|.++..+++..+..
T Consensus        32 ~g~~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~   82 (106)
T 2eei_A           32 KGVYMTDITPQGVAMRAG-VLADDHLIEVNGENVEDASHEEVVEKVKKSGSR   82 (106)
T ss_dssp             CSCEECCCCTTSHHHHHT-CCSSEEEEEETTEECTTCCHHHHHHHHHHHCSE
T ss_pred             CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCe
Confidence            488999999999999999 999999999999999999999999999877666

>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A

Probab=99.18  E-value=5.3e-11  Score=82.53  Aligned_cols=47  Identities=38%  Similarity=0.531  Sum_probs=44.7

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHc
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRL   90 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~   90 (175)
                      .+++|..|.++|||+++| |++||+|++|||+.+.+++++++..+|++
T Consensus        51 ~gv~V~~V~~gspA~~aG-L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   97 (124)
T 3tsv_A           51 VGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLD   97 (124)
T ss_dssp             SCEEEEEECTTCHHHHTT-CCTTEEEEEETTEECSSCCHHHHHHHHHH
T ss_pred             CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            489999999999999999 99999999999999999999999998885

>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.17  E-value=2.2e-11  Score=81.18  Aligned_cols=49  Identities=18%  Similarity=0.289  Sum_probs=45.3

Q ss_pred             CeEEEEecCCCccccc-CCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          44 GILVHDIYPEGAAAKD-ARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~-G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      +++|..|.++|||+++ | |++||+|++|||+++.+. +.+++.++++.+..
T Consensus        36 ~v~V~~V~~~spA~~agG-L~~GD~I~~ing~~v~~~-~~~~~~~~~~~~~~   85 (100)
T 2edp_A           36 PLTVSKIEDGGKAALSQK-MRTGDELVNINGTPLYGS-RQEALILIKGSFRI   85 (100)
T ss_dssp             EEEECCCCTTSHHHHHTS-CCTTCEEEEETTEECCSC-SHHHHHHHHTCCSS
T ss_pred             CeEEEEECCCCHHHHcCC-CCCCCEEEEECCEEccch-HHHHHHHHHhCCCe
Confidence            6899999999999999 7 999999999999999987 89999999987666

>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.17  E-value=4.4e-11  Score=82.60  Aligned_cols=50  Identities=22%  Similarity=0.297  Sum_probs=46.9

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTP   92 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~   92 (175)
                      .+++|..|.+++||+++|+|++||+|++|||+.+.+++++++.++|+...
T Consensus        45 ~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~   94 (122)
T 1v5q_A           45 SPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSS   94 (122)
T ss_dssp             SCCEEEEECTTSHHHHSCCCCTTCCEEEETTEESSSSCHHHHHHHHHHHT
T ss_pred             CCcEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            36899999999999999999999999999999999999999999999764

>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.17  E-value=2.7e-11  Score=82.99  Aligned_cols=50  Identities=24%  Similarity=0.458  Sum_probs=46.3

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .+++|..|.++|||+ +| |++||+|++|||+++.+++|.+++.++++.+..
T Consensus        46 ~gv~V~~V~~~spA~-~g-L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~   95 (117)
T 2csj_A           46 TSIVISDVLPGGPAD-GL-LQENDRVVMVNGTPMEDVLHSFAVQQLRKSGKI   95 (117)
T ss_dssp             CBCEEEEECTTSSHH-HH-BCTTCEEEEESSCBCBTCCHHHHHHHHHHSCSE
T ss_pred             CCEEEEEECCCCccc-cc-CCCCCEEEEECCEECCCcCHHHHHHHHhcCCCe
Confidence            379999999999997 77 999999999999999999999999999987666

>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A

Probab=99.17  E-value=5.5e-11  Score=81.61  Aligned_cols=52  Identities=35%  Similarity=0.518  Sum_probs=48.9

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .+++|..|.++|||+++|+|++||+|++|||+++.++++.++..+++..+..
T Consensus        38 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~   89 (119)
T 1tp5_A           38 EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQT   89 (119)
T ss_dssp             CCEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHTSCSE
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence            5899999999999999999999999999999999999999999999887766

>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.17  E-value=9e-12  Score=86.57  Aligned_cols=51  Identities=24%  Similarity=0.365  Sum_probs=47.6

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .+++|..|.++|||+++| |++||+|++|||+++.+++|.+++.+|+..+..
T Consensus        61 ~gv~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~  111 (126)
T 2yuy_A           61 DTIFVKQVKEGGPAFEAG-LCTGDRIIKVNGESVIGKTYSQVIALIQNSDTT  111 (126)
T ss_dssp             CCCCBCCCCSSSHHHHHT-CCSSCCCCEETTEECSSCCHHHHHHHHHTCTTE
T ss_pred             CCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCE
Confidence            368999999999999999 999999999999999999999999999987555

>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B

Probab=99.17  E-value=1.2e-10  Score=79.03  Aligned_cols=50  Identities=24%  Similarity=0.399  Sum_probs=46.1

Q ss_pred             CCeEEEEecCCCcccccCCc-CCCCEEEEECCeecCCCCHHHHHHHHHcCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARL-KFGDQILELTGEDFRNITHAKAMAHLRLTPA   93 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L-~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~   93 (175)
                      .+++|..|.++|||+++| | ++||+|++|||+.+.+++++++..+++....
T Consensus        26 ~~~~V~~v~~~spA~~aG-ll~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g   76 (112)
T 1qau_A           26 PPVIISDLIRGGAAEQSG-LIQAGDIILAVNDRPLVDLSYDSALEVLRGIAS   76 (112)
T ss_dssp             SCEEEEEECTTSHHHHHT-CCCTTCEEEEETTEECTTSCHHHHHHHHHHSCS
T ss_pred             CCEEEEEeCCCChHHHcC-CCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence            389999999999999999 7 9999999999999999999999999987543

>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.16  E-value=4.7e-11  Score=81.74  Aligned_cols=51  Identities=29%  Similarity=0.464  Sum_probs=46.5

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .+++|..|.+++||+++| |++||+|++|||+++.++++.++..+++..+..
T Consensus        42 ~gv~V~~V~~~spA~~aG-L~~GD~Il~vng~~v~~~~~~~~~~~~~~~g~~   92 (117)
T 1uit_A           42 GGIYVSKVTVGSIAHQAG-LEYGDQLLEFNGINLRSATEQQARLIIGQQCDT   92 (117)
T ss_dssp             SCEEEEEECTTSHHHHHT-CCTTCEECEETTEETTTCCHHHHHHHTTSCCSE
T ss_pred             CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence            489999999999999999 999999999999999999999988777766655

>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A

Probab=99.16  E-value=9.9e-11  Score=79.95  Aligned_cols=52  Identities=15%  Similarity=0.303  Sum_probs=48.5

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .+++|..|.++|||+++|+|++||+|++|||+++.+.++.++..+++..+..
T Consensus        50 ~~~~V~~V~~gspA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~~  101 (114)
T 2gzv_A           50 PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGE  101 (114)
T ss_dssp             CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSE
T ss_pred             CCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence            3799999999999999999999999999999999999999999999987665

>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A

Probab=99.16  E-value=1.3e-10  Score=78.16  Aligned_cols=50  Identities=26%  Similarity=0.430  Sum_probs=45.9

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .+++|..|.++|||+ +| |++||+|++|||+++.++++.++...+++.+..
T Consensus        39 ~gv~V~~V~~~spA~-ag-l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~   88 (107)
T 2h2b_A           39 TSIVISDVLKGGPAE-GQ-LQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKN   88 (107)
T ss_dssp             CCEEEEEECTTSTTB-TT-BCTTCEEEEETTEECTTCCHHHHHHHHHTCCSE
T ss_pred             CCEEEEEECCCCchh-hC-CCCCCEEEEECCEECCCccHHHHHHHhhCCCCE
Confidence            389999999999999 88 999999999999999999999998888876666

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}

Probab=99.14  E-value=6e-11  Score=92.18  Aligned_cols=53  Identities=36%  Similarity=0.493  Sum_probs=49.1

Q ss_pred             CeEEEEecCCCcccc-cCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCCCCC
Q psy1521          44 GILVHDIYPEGAAAK-DARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKP   97 (175)
Q Consensus        44 gi~V~~v~~gg~A~~-~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~~~~   97 (175)
                      ++||..|.++|||++ +| |++||+|++|||+++.+++|.+++.+|++.+..+++
T Consensus       104 gi~V~~V~~gspA~~~aG-L~~GD~Il~VNG~~v~~~t~~e~v~~l~~~g~~V~L  157 (263)
T 1z87_A          104 PILISKIFKGLAADQTEA-LFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVL  157 (263)
T ss_dssp             EEEEEECCTTSHHHHCTT-CCSSCEEEEESSCBCTTSCHHHHHHHHHHCCSCCCE
T ss_pred             CEEEEEECCCCHHHHhCC-CCCCCEEEEECCEECCCcCHHHHHHHHhcCCCeEEE
Confidence            799999999999999 56 999999999999999999999999999998777553

>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}

Probab=99.14  E-value=5.6e-11  Score=77.49  Aligned_cols=47  Identities=17%  Similarity=0.243  Sum_probs=43.9

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHc
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRL   90 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~   90 (175)
                      .+++|..|.++|||+++| |++||+|++|||+.+.+.++.++..+++.
T Consensus        28 ~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~   74 (90)
T 2eaq_A           28 PGIFVASVEAGSPAEFSQ-LQVDDEIIAINNTKFSYNDSKEWEEAMAK   74 (90)
T ss_dssp             TEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECCTTCHHHHHHHHHH
T ss_pred             CCEEEEEECCCChHHHcC-CCCCCEEEEECCEEccCCCHHHHHHHHHh
Confidence            478999999999999999 99999999999999987889999999985

>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}

Probab=99.13  E-value=1.6e-10  Score=74.96  Aligned_cols=45  Identities=29%  Similarity=0.448  Sum_probs=39.8

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHc
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRL   90 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~   90 (175)
                      .+++|..+ ++|||+ +| |++||+|++|||+++.+++|+++..++++
T Consensus        27 ~~~~v~~v-~~spA~-aG-l~~GD~I~~vng~~v~~~~~~~~~~~l~~   71 (88)
T 3bpu_A           27 GGQRVKQI-VDSPRS-RG-LKEGDLIVEVNKKNVQALTHNQVVDMLVE   71 (88)
T ss_dssp             SSEEEEEC-CC--CC-TT-CCTTCEEEEETTEECTTSCHHHHHHHHHT
T ss_pred             CcEEEEEe-cCChhH-hC-CCCCCEEEEECCEEcCCCCHHHHHHHHHh
Confidence            47888887 999999 88 99999999999999999999999999985

>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A

Probab=99.13  E-value=7.2e-11  Score=77.88  Aligned_cols=47  Identities=26%  Similarity=0.369  Sum_probs=44.7

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHc
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRL   90 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~   90 (175)
                      .+++|..|.++|||+++| |++||+|++|||+++.+++++++..++++
T Consensus        35 ~g~~V~~V~~~spA~~aG-L~~GD~Il~vng~~v~~~~~~~l~~~l~~   81 (94)
T 3kzd_A           35 RRLYVNSVKETGLASKKG-LKAGDEILEINNRAADALNSSMLKDFLSQ   81 (94)
T ss_dssp             CEEEEEEECTTSHHHHTT-CCTTCEEEEETTEEGGGCCHHHHHHHHHS
T ss_pred             CCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhC
Confidence            379999999999999999 99999999999999999999999999984

>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.12  E-value=1.1e-10  Score=77.74  Aligned_cols=47  Identities=36%  Similarity=0.547  Sum_probs=43.3

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHc
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRL   90 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~   90 (175)
                      .+++|..|.+++||+++| |++||+|++|||+.+.++++.+++..++.
T Consensus        35 ~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~~   81 (101)
T 1uez_A           35 VGIYVSLVEPGSLAEKEG-LRVGDQILRVNDKSLARVTHAEAVKALKG   81 (101)
T ss_dssp             CCEEEEEECTTSHHHHHT-CCSSCCEEEETTEECSSCCHHHHHHHSSS
T ss_pred             CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCcCHHHHHHhhcC
Confidence            489999999999999999 99999999999999999999887777654

>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A 2lsr_A

Probab=99.12  E-value=8.3e-11  Score=87.35  Aligned_cols=49  Identities=22%  Similarity=0.478  Sum_probs=46.6

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      +++|..|.++|||+++| |++||+|++|||.++.+++|.+++.+++. +..
T Consensus       111 ~~~V~~V~~gspA~~aG-L~~GD~Il~vng~~v~~~~~~~~~~~l~~-~~~  159 (192)
T 3k1r_A          111 GLFISHLIKGGQADSVG-LQVGDEIVRINGYSISSCTHEEVINLIRT-EKT  159 (192)
T ss_dssp             EEEEEEECTTSHHHHTT-CCTTEEEEEETTEECTTCCHHHHHHHHTS-SSE
T ss_pred             CEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHcC-CCe
Confidence            78999999999999999 99999999999999999999999999998 555

>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens}

Probab=99.11  E-value=6.7e-11  Score=79.32  Aligned_cols=51  Identities=18%  Similarity=0.189  Sum_probs=47.8

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .+++|..|.++|||+++| |++||+|++|||+++.+++++++..+|++.+..
T Consensus        48 ~~~~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~   98 (104)
T 2z17_A           48 MFTLICKIQEDSPAHCAG-LQAGDVLANINGVSTEGFTYKQVVDLIRSSGNL   98 (104)
T ss_dssp             CCEEEEEECTTSHHHHHT-CCTTCBCCEETTEECTTCCHHHHHHHHHHTTTE
T ss_pred             CCeEEEEECCCChHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCc
Confidence            489999999999999999 999999999999999999999999999987555

>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A

Probab=99.11  E-value=6.4e-11  Score=76.23  Aligned_cols=41  Identities=27%  Similarity=0.431  Sum_probs=38.8

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      ++.++|||+++| |+.||+|++|||+++.+++|++++++|+.
T Consensus        29 ~v~~gspA~~aG-l~~GD~Il~VNG~~v~~~~~~evv~llr~   69 (82)
T 1r6j_A           29 SIVKDSSAARNG-LLTEHNICEINGQNVIGLKDSQIADILST   69 (82)
T ss_dssp             EECTTSHHHHHT-CCSSEEEEEETTEECTTCCHHHHHHHHHH
T ss_pred             EecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHhc
Confidence            578999999999 99999999999999999999999999973

>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.11  E-value=6e-11  Score=81.09  Aligned_cols=46  Identities=26%  Similarity=0.384  Sum_probs=44.1

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHc
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRL   90 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~   90 (175)
                      +++|..|.++|||+++| |++||+|++|||+++.+++|.++..+++.
T Consensus        45 gv~V~~V~~~spA~~aG-L~~GD~Il~Ing~~v~~~~~~~~~~~l~~   90 (114)
T 2d8i_A           45 RLYVNSVKETGLASKKG-LKAGDEILEINNRAADALNSSMLKDFLSQ   90 (114)
T ss_dssp             EEEEEECCTTSSHHHHT-CCTTCCEEEESSCBGGGCCHHHHHHHHTS
T ss_pred             CEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCcCHHHHHHHHhC
Confidence            78999999999999999 99999999999999999999999999985

>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4

Probab=99.11  E-value=4.4e-10  Score=76.32  Aligned_cols=65  Identities=20%  Similarity=0.344  Sum_probs=52.0

Q ss_pred             CeeCCCCCHHHHHHH-h--------hCCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          26 GTDVRDKSQEEVATI-M--------KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        26 g~~v~~~~~~~~~~~-l--------~~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      |..+.+++.+.+..+ +        ..|++|..|.++|||+++| |++||+|++|||+.+.  +..++..+++. +..
T Consensus         9 Gi~~~~l~~~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~--~~~~~~~~l~~-~~~   82 (113)
T 2pzd_A            9 GVMMLTLSPSILAELQLREPSFPDVQHGVLIHKVILGSPAHRAG-LRPGDVILAIGEQMVQ--NAEDVYEAVRT-QSQ   82 (113)
T ss_dssp             CEEEEECCHHHHHHHHHHCSSCCCCSSCEEEEEEBTTSHHHHHT-CCTTCEEEEETTEECC--SHHHHHHHHHH-CSS
T ss_pred             EEEEEeCCHHHHHHhccccccccCCCCCeEEEEeCCCChHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHhC-CCe
Confidence            556666666554443 2        3689999999999999999 9999999999999996  46888888887 444

>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.10  E-value=5.9e-11  Score=80.59  Aligned_cols=52  Identities=37%  Similarity=0.529  Sum_probs=48.5

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .+++|..|.+++||+++|+|++||+|++|||+++.++++.++..+++..+..
T Consensus        39 ~gv~V~~V~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~~~~~~~~   90 (113)
T 1um7_A           39 EGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAGQS   90 (113)
T ss_dssp             CCCBCCCBCSSSHHHHTTCCCTTCEEEEESSCBCTTCCHHHHHHHHHSCCSE
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCc
Confidence            4889999999999999999999999999999999999999999999976665

>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}

Probab=99.09  E-value=3.3e-10  Score=77.14  Aligned_cols=46  Identities=28%  Similarity=0.367  Sum_probs=41.4

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTP   92 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~   92 (175)
                      +.+|.+|.+  +|+.+| |++||+|++|||+++.+++|++++++|++++
T Consensus        35 g~~V~~I~~--~~~~aG-L~~GD~Il~VNG~~v~~~~h~evv~~lk~~~   80 (113)
T 3soe_A           35 GQKVKMILD--SQWCQG-LQKGDIIKEIYHQNVQNLTHLQVVEVLKQFP   80 (113)
T ss_dssp             EEEEEEESC--GGGSTT-CCTTCEEEEETTEECTTSCHHHHHHHHHHSC
T ss_pred             CcEEEEecC--hHHhCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            568999988  477777 9999999999999999999999999999864

>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.08  E-value=5.7e-10  Score=73.80  Aligned_cols=46  Identities=26%  Similarity=0.395  Sum_probs=42.1

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTP   92 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~   92 (175)
                      |++|..|.++  |+++| |++||+|++|||+++.+++|++++++|+...
T Consensus        33 Gv~V~~v~~~--a~~aG-L~~GD~I~~vng~~v~~~~~~~~~~~l~~~~   78 (96)
T 1ujv_A           33 GQRVKQILDI--QGCPG-LCEGDLIVEINQQNVQNLSHTEVVDILKDCP   78 (96)
T ss_dssp             EEEEEEESCG--GGSTT-CCSSCEEEEETTEECSSCCHHHHHHHHHHSC
T ss_pred             CEEEEEEecc--cccCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            7899999983  77888 9999999999999999999999999999864

>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.08  E-value=2.4e-10  Score=79.38  Aligned_cols=48  Identities=40%  Similarity=0.607  Sum_probs=44.9

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLT   91 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~   91 (175)
                      .+++|..|.++|||+++| |++||+|++|||+.+.++++.+++..++..
T Consensus        46 ~gv~V~~V~~~spA~~aG-L~~GD~I~~vng~~v~~~~~~~~~~~~~~~   93 (128)
T 1uf1_A           46 LGIYITGVDPGSEAEGSG-LKVGDQILEVNGRSFLNILHDEAVRLLKSS   93 (128)
T ss_dssp             CCCEEEEECTTCHHHHHT-CCTTCEEEEETTEECSSCCHHHHHHHHTTC
T ss_pred             CCEEEEEECCCCHHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHhcC
Confidence            489999999999999999 999999999999999999998898888764

>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}

Probab=99.08  E-value=3.5e-11  Score=79.00  Aligned_cols=44  Identities=18%  Similarity=0.400  Sum_probs=39.4

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLT   91 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~   91 (175)
                      |++|..|.++|||++ | |++||+|++|||+.+.+  ..++..++++.
T Consensus         2 Gv~V~~V~~~spA~~-G-L~~GD~I~~InG~~v~~--~~~l~~~l~~~   45 (91)
T 2kjp_A            2 GIYASSVVENMPAKG-K-IEVGDKIISADGKNYQS--AEKLIDYISSK   45 (91)
T ss_dssp             CSSCCCCCCSSCCSS-C-CCSSCEEEEETTBCCSS--HHHHHHHHSSC
T ss_pred             ceEEEEECCCChHHH-c-CCCCCEEEEECCEECCC--HHHHHHHHHcC
Confidence            678899999999999 8 99999999999999964  67888888865

>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.07  E-value=1.3e-10  Score=79.07  Aligned_cols=50  Identities=26%  Similarity=0.321  Sum_probs=46.7

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      +++|..|.+++||+++| |++||+|++|||+++.+++|+++.++|++.+..
T Consensus        37 ~v~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~d~~~~i~~~~~~   86 (111)
T 1vae_A           37 PVQVHFLDPHCSASLAG-AKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGE   86 (111)
T ss_dssp             SCEECCCCTTSSHHHHH-CCTTCEEEEETTEECSSCCHHHHHHHHHHTTTS
T ss_pred             CEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCc
Confidence            67899999999999999 999999999999999988999999999987664

>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.07  E-value=2.2e-10  Score=78.69  Aligned_cols=51  Identities=20%  Similarity=0.363  Sum_probs=47.1

Q ss_pred             CCeEEEEecC--CCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYP--EGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~--gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .+++|..|.+  ++||+++| |++||+|++|||+.+.+++|+++..+|+..+..
T Consensus        44 ~gv~V~~V~~~~~spA~~aG-L~~GD~Il~Vng~~v~~~~~~dl~~~l~~~g~~   96 (118)
T 2yub_A           44 TTVQVKEVNRMHISPNNRNA-IHPGDRILEINGTPVRTLRVEEVEDAIKQTSQT   96 (118)
T ss_dssp             CEEEEEECCTTTSCTTHHHH-CCTTCCEEEESSSBTTTSCHHHHHHHHHCCSSC
T ss_pred             CcEEEEEecCCCCChHHHcC-CCCCCEEEEECCEECCCcCHHHHHHHHHhCCCE
Confidence            4899999999  99999999 999999999999999999999999999987444

>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens}

Probab=99.07  E-value=2.8e-10  Score=78.99  Aligned_cols=51  Identities=20%  Similarity=0.395  Sum_probs=47.3

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .+++|..|.++|||+++| |++||+|++|||+++.++++.++..+|+.....
T Consensus        33 ~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~   83 (128)
T 2kjd_A           33 PGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDE   83 (128)
T ss_dssp             CSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTTCSE
T ss_pred             CCEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCC
Confidence            389999999999999999 999999999999999999999999999987444

>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens}

Probab=99.06  E-value=4.4e-10  Score=76.25  Aligned_cols=65  Identities=17%  Similarity=0.364  Sum_probs=50.5

Q ss_pred             CeeCCCCCHHHHHHH-h--------hCCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          26 GTDVRDKSQEEVATI-M--------KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        26 g~~v~~~~~~~~~~~-l--------~~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      |..+.+++.+.+..+ +        ..|++|..|.++|||+++| |++||+|++|||+.+.+  ..+....++. +..
T Consensus         9 Gi~~~~l~~~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~--~~~~~~~l~~-g~~   82 (112)
T 2p3w_A            9 GIRMRTITPSLVDELKASNPDFPEVSSGIYVQEVAPNSPSQRGG-IQDGDIIVKVNGRPLVD--SSELQEAVLT-ESP   82 (112)
T ss_dssp             CEEEEECCHHHHHHHHHHCTTC--CCSSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECCS--HHHHHHHHHH-CSS
T ss_pred             eEEEecCCHHHHHHhcccCcCcccCCCCeEEEEECCCChHHHCC-CCCCCEEEEECCEECCC--HHHHHHHHhC-CCe
Confidence            556666666544433 1        3689999999999999999 99999999999999964  6778777753 445

>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A

Probab=99.05  E-value=4.8e-10  Score=76.25  Aligned_cols=50  Identities=34%  Similarity=0.616  Sum_probs=46.1

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .+++|..|.+++||+++| |++||+|++|||+++.++++.++..+++.. ..
T Consensus        41 ~gv~V~~V~~~s~A~~aG-L~~GD~Il~vng~~v~~~~~~~~~~~~~~~-~~   90 (114)
T 1x5n_A           41 PGIFISHVKPGSLSAEVG-LEIGDQIVEVNGVDFSNLDHKEAVNVLKSS-RS   90 (114)
T ss_dssp             CSEEEEEECTTSTTTTTT-CCTTCEEEEETTEETTSCCTTHHHHHHHHC-SS
T ss_pred             CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcC-Ce
Confidence            489999999999999999 999999999999999999998899999875 45

>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1 protein; PDZ domain, structural genomics consortium, SGC, hydrolase R; 2.29A {Homo sapiens}

Probab=99.04  E-value=4.8e-10  Score=74.56  Aligned_cols=47  Identities=13%  Similarity=0.169  Sum_probs=43.9

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLT   91 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~   91 (175)
                      +.+|..|.++|||+++| |++||+|++|||..+...+++++...+++.
T Consensus        40 ~~~I~~V~~gSpA~~AG-L~~GD~I~~Ing~~v~~~s~~dv~~~i~~~   86 (101)
T 3qik_A           40 AVVVKSVQRGSLAEVAG-LQVGRKIYSINEDLVFLRPFSEVESILNQS   86 (101)
T ss_dssp             EEEEEEECTTSHHHHHT-CCTTCBEEEETTEESTTSCHHHHHHHHHHH
T ss_pred             CeEEEEECCCCHHHHcC-CCCCCEEEEECCEEcCcCCHHHHHHHHHHh
Confidence            66899999999999999 999999999999999878999999999873

>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A

Probab=99.04  E-value=1.3e-09  Score=72.48  Aligned_cols=45  Identities=24%  Similarity=0.420  Sum_probs=39.8

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLT   91 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~   91 (175)
                      .|++|..|.++|||+. | |++||+|++|||+.+.+  +.+...+|...
T Consensus         7 ~Gv~V~~V~~~spA~~-G-L~~GD~I~~Ing~~v~~--~~dl~~~l~~~   51 (100)
T 3i18_A            7 DGVYVMSVKDDVPAAD-V-LHAGDLITEIDGNAFKS--SQEFIDYIHSK   51 (100)
T ss_dssp             CCEEEEEECTTSGGGG-T-CCTTCEEEEETTBCCSS--HHHHHHHHHTS
T ss_pred             CCEEEEEeCCCCchHH-C-CCCCCEEEEECCEECCC--HHHHHHHHHhC
Confidence            5899999999999995 8 99999999999999964  67888888764

>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}

Probab=99.03  E-value=3e-10  Score=74.80  Aligned_cols=42  Identities=26%  Similarity=0.414  Sum_probs=40.2

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      +|.|||+|+++|+|+.||+|++|||+++..++|.+++++|+.
T Consensus        34 rI~~gg~a~r~g~L~vGD~I~~VNG~~v~g~~h~evv~lLk~   75 (95)
T 3gge_A           34 RIKDGGVIDSVKTICVGDHIESINGENIVGWRHYDVAKKLKE   75 (95)
T ss_dssp             EECTTSHHHHCTTCCTTCEEEEETTEECTTCCHHHHHHHHHH
T ss_pred             EEcCCChHHhcCCCCCCCEEEEECCEEccCCCHHHHHHHHHh
Confidence            588999999999999999999999999999999999999974

>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1

Probab=99.03  E-value=1.9e-10  Score=79.74  Aligned_cols=50  Identities=24%  Similarity=0.399  Sum_probs=46.2

Q ss_pred             CCeEEEEecCCCcccccCCc-CCCCEEEEECCeecCCCCHHHHHHHHHcCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARL-KFGDQILELTGEDFRNITHAKAMAHLRLTPA   93 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L-~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~   93 (175)
                      .+++|..|.++|||+++| | ++||+|++|||+.+.++++.++..+|+....
T Consensus        33 ~~~~V~~V~~~spA~~aG-ll~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g   83 (127)
T 1b8q_A           33 PPVIISDLIRGGAAEQSG-LIQAGDIILAVNDRPLVDLSYDSALEVLRGIAS   83 (127)
T ss_dssp             SCEEECCCSSSSSHHHHS-SCCTTTCCCEETTEECSSSCHHHHHHHHHSCCS
T ss_pred             CCEEEEEeCCCCHHHHcC-CCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence            489999999999999999 7 9999999999999999999999999997543

>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens}

Probab=98.59  E-value=2.6e-11  Score=82.64  Aligned_cols=50  Identities=30%  Similarity=0.527  Sum_probs=46.8

Q ss_pred             CeEEEEecCCCcccc-cCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          44 GILVHDIYPEGAAAK-DARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        44 gi~V~~v~~gg~A~~-~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      +++|..|.++|||++ +| |++||+|++|||+++.+.++.++..++++.+..
T Consensus        54 gv~V~~V~~~spA~~~aG-L~~GD~Il~ING~~v~~~~~~~~~~~l~~~~~~  104 (112)
T 2lob_A           54 PILISEIHPGQPADRCGG-LHVGDAILAVNGVNLRDTKHKEAVTILSQQRGE  104 (112)
Confidence            789999999999999 78 999999999999999999999999999887666

>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.02  E-value=6.4e-10  Score=76.90  Aligned_cols=48  Identities=33%  Similarity=0.565  Sum_probs=44.0

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTP   92 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~   92 (175)
                      .+++|..|.++|||+++|+|++||+|++|||+.+.  ++.++..+|+...
T Consensus        48 ~gv~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~--~~~~~~~~l~~~~   95 (124)
T 1wh1_A           48 IGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQ--NREEAVALLTSEE   95 (124)
T ss_dssp             CCEEEEEECSSSHHHHTCCCCTTCEEEEESSCBCC--SHHHHHHHHTCSS
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECC--CHHHHHHHHHhCC
Confidence            58999999999999999999999999999999996  5899999998753

>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}

Probab=99.01  E-value=2.8e-09  Score=90.38  Aligned_cols=48  Identities=13%  Similarity=0.152  Sum_probs=44.0

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      +++|+.|.++++|+..| ++.||.|++|||+.+.+  ..+..++|+++.+.
T Consensus       416 gVvvs~V~~~s~a~~~g-~~~gdiI~~vNg~~V~s--~~~l~~~l~~~k~~  463 (539)
T 4fln_A          416 IVILSQVLANEVNIGYE-DMNNQQVLKFNGIPIRN--IHHLAHLIDMCKDK  463 (539)
T ss_dssp             CEEEEEECCCGGGTTCS-SCCSEEEEEETTEECCS--HHHHHHHHHTCCSS
T ss_pred             EEEEEEecCCchhhhcC-CCCCCEEEeECCEEcCC--HHHHHHHHHHcCCC
Confidence            68999999999999999 99999999999999965  58889999988776

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A

Probab=98.99  E-value=3.2e-09  Score=88.10  Aligned_cols=95  Identities=28%  Similarity=0.378  Sum_probs=66.4

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcC--CCCCCCCCCCCCCCCCCCCCCCcccceee
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLT--PAKAKPCPTVPSEPNANATTGEKTTFYFH  120 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (175)
                      .|++|..|.++|||+++| |++||+|++|||+.+.+  +.+...++...  +..                          
T Consensus       263 ~G~~V~~V~~~spA~~aG-L~~GD~I~~vnG~~v~~--~~~l~~~l~~~~~g~~--------------------------  313 (436)
T 4a8c_A          263 RGAFVSEVLPGSGSAKAG-VKAGDIITSLNGKPLNS--FAELRSRIATTEPGTK--------------------------  313 (436)
T ss_pred             cceEEEEECCCChHHHCC-CCCCCEEEEECCEECCC--HHHHHHHHHhcCCCCE--------------------------
Confidence            489999999999999999 99999999999999975  46666666543  334                          


Q ss_pred             eeeeeeecccCCCCCCCCCceEEEEEEeCCC-------CCcCEEEEcCc------CCCceEEEeccC
Q psy1521         121 FQVKLVVLRDTVTKEDDLLEFVDVELTKKAG-------KGFGLSLVGRK------QGPGVFISDLVS  174 (175)
Q Consensus       121 ~~v~l~v~r~~~~~~~~~~~~~~v~l~k~~~-------~~lGfsi~gg~------~~~gi~I~~i~~  174 (175)
                        +.|++.|+...      ..+++++.+.+.       ..+|+......      ...|++|..|.|
T Consensus       314 --v~l~v~R~g~~------~~~~v~l~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~gv~V~~V~~  372 (436)
T 4a8c_A          314 --VKLGLLRNGKP------LEVEVTLDTSTSSSASAEMITPALEGATLSDGQLKDGGKGIKIDEVVK  372 (436)
T ss_pred             --EEEEEEECCEE------EEEEEEECCCCcccccccccccCceeeecccccccCCCCCEEEEEeCC
Confidence              88888887532      234444443221       12555554332      225899998876

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=98.97  E-value=7.4e-10  Score=92.40  Aligned_cols=51  Identities=35%  Similarity=0.487  Sum_probs=47.6

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHc--CCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRL--TPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~--~~~~   94 (175)
                      .|+||..|.+||||+++| |++||+|++|||+++.+++|++++.+|++  .+..
T Consensus        23 ~Gi~V~~V~~gspA~~aG-L~~GD~Il~VNG~~v~~~t~~e~~~~L~~~~~g~~   75 (468)
T 3shw_A           23 VGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEE   75 (468)
T ss_dssp             TEEEEEEECSSSHHHHTT-CCTTEEEEEETTEECTTCCHHHHHHHHHHSCTTSE
T ss_pred             CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCE
Confidence            389999999999999999 99999999999999999999999999998  4444

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=98.95  E-value=1e-09  Score=89.90  Aligned_cols=51  Identities=35%  Similarity=0.487  Sum_probs=47.3

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHc--CCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRL--TPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~--~~~~   94 (175)
                      .|+||..|.+||||+++| |++||+|++|||.++.++++++++.+|++  .+..
T Consensus        31 ~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~e~~~~l~~~~~g~~   83 (391)
T 3tsz_A           31 VGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEE   83 (391)
T ss_dssp             TEEEEEEECTTCHHHHTT-CCTTEEEEEETTEECTTCCHHHHHHHHHHSCTTSE
T ss_pred             CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhhcCCCe
Confidence            489999999999999999 99999999999999999999999999996  4444

>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}

Probab=98.94  E-value=1.1e-09  Score=71.29  Aligned_cols=41  Identities=27%  Similarity=0.516  Sum_probs=39.0

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      +|.|+|+|+++|+|+.||+|++|||.++.+++++++.++++
T Consensus        27 ~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~i~   67 (88)
T 3e17_A           27 EMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIE   67 (88)
T ss_dssp             EECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             EECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            57899999999999999999999999999999999999886

>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A

Probab=98.92  E-value=1.3e-09  Score=73.52  Aligned_cols=41  Identities=24%  Similarity=0.590  Sum_probs=38.9

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      +|.|+|||+++|+|+.||+|++|||+++.+++|++++.+++
T Consensus        39 ~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   79 (108)
T 3cbz_A           39 SIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLR   79 (108)
T ss_dssp             EECTTSHHHHHCCCCTTCEEEEETTEETTSCCHHHHHHHHH
T ss_pred             EECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            57899999999999999999999999999999999999885

>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}

Probab=98.88  E-value=3.8e-09  Score=69.49  Aligned_cols=45  Identities=24%  Similarity=0.432  Sum_probs=39.9

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLT   91 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~   91 (175)
                      .|++|..|.++|||++ | |++||+|++|||+.+.+  ..+...+++..
T Consensus         5 ~Gv~V~~V~~~spA~~-G-L~~GD~Il~InG~~v~~--~~~l~~~l~~~   49 (94)
T 2kl1_A            5 KGVYVMSVLPNMPAAG-R-LEAGDRIAAIDGQPINT--SEQIVSYVREK   49 (94)
T ss_dssp             CCEECCCCCTTSTTBT-T-BCTTCEEEEETTBCCCC--HHHHHHHHHHS
T ss_pred             CcEEEEEECCCChHHh-C-CCCCCEEEEECCEECCC--HHHHHHHHHhC
Confidence            3789999999999999 8 99999999999999965  67888888864

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A

Probab=98.88  E-value=3.3e-09  Score=88.40  Aligned_cols=45  Identities=24%  Similarity=0.410  Sum_probs=40.0

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHc
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRL   90 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~   90 (175)
                      .|++|..|.++|||+++| |++||+|++|||+.+.+  +.+...++..
T Consensus       282 ~G~~V~~V~~~spA~~aG-L~~GDvI~~vnG~~v~~--~~~l~~~l~~  326 (451)
T 3pv2_A          282 QGALVSQVNPNSPAELAG-LKAGDIITQINDTKITQ--ATQVKTTISL  326 (451)
T ss_dssp             CCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECCS--HHHHHHHHHT
T ss_pred             ceEEEEecCCCChHHHcC-CCCCCEEEEECCEEcCC--HHHHHHHHHh
Confidence            589999999999999999 99999999999999965  5777777764

>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.87  E-value=1.5e-09  Score=73.44  Aligned_cols=42  Identities=36%  Similarity=0.578  Sum_probs=39.7

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      +|.++|+|+++|+|+.||+|++|||+++.+++|++++++|+.
T Consensus        47 ~v~~~s~A~~aG~l~~GD~Il~Vng~~~~~~~~~~~~~~l~~   88 (109)
T 1wi4_A           47 EVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITR   88 (109)
T ss_dssp             EECTTSHHHHHCSCCTTCBEEEETTSCCTTCCHHHHHHHHHH
T ss_pred             EeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            578999999999999999999999999999999999999864

>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae}

Probab=98.87  E-value=1e-08  Score=71.76  Aligned_cols=45  Identities=16%  Similarity=0.211  Sum_probs=40.0

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLT   91 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~   91 (175)
                      .|++|..|.++|||+ +| |++||+|++|||+.+.+  ..+...+++..
T Consensus        57 ~g~~V~~V~~~spA~-aG-L~~GD~I~~inG~~v~~--~~~l~~~l~~~  101 (134)
T 2l97_A           57 SGVIVRSVQSNMPAN-GH-LEKYDVITKVDDKEIAS--STDLQSALYNH  101 (134)
T ss_dssp             SCEEEEECSTTSGGG-TT-SCSSCEEEEETTEECCC--HHHHHHHHHHS
T ss_pred             CCEEEEEECCCCchH-HC-CCCCCEEEEECCEEcCC--HHHHHHHHHhC
Confidence            589999999999999 99 99999999999999965  57777777764

>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.86  E-value=1.1e-09  Score=73.34  Aligned_cols=42  Identities=33%  Similarity=0.488  Sum_probs=39.5

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      +|.|++||+++|+|+.||+|++|||.++.+++|++++++|+.
T Consensus        38 ~v~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   79 (103)
T 1ufx_A           38 TIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAE   79 (103)
T ss_dssp             EECTTSHHHHHCSSCTTCBCCEETTEECTTCBHHHHHHHHHH
T ss_pred             EeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHH
Confidence            578999999999999999999999999999999999999874

>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A

Probab=98.85  E-value=1.7e-08  Score=66.54  Aligned_cols=44  Identities=16%  Similarity=0.153  Sum_probs=38.7

Q ss_pred             EEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCC
Q psy1521          46 LVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTP   92 (175)
Q Consensus        46 ~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~   92 (175)
                      +|..|.++|||+++| |++||+|++|||+.+.  +++++...|....
T Consensus         5 ~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~--~~~d~~~~l~~~~   48 (95)
T 3id1_A            5 VVGEIAANSIAAEAQ-IAPGTELKAVDGIETP--DWDAVRLQLVDKI   48 (95)
T ss_dssp             BEEEECTTSHHHHTT-CCTTCEEEEETTEECS--SHHHHHHHHHHTT
T ss_pred             EEEeeCCCCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHHhc
Confidence            688999999999999 9999999999999996  4688888887543

>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0

Probab=98.85  E-value=3.6e-09  Score=69.29  Aligned_cols=42  Identities=36%  Similarity=0.591  Sum_probs=39.4

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      +|.|+|||+++|+|+.||+|++|||.++.++++.++..+++.
T Consensus        34 ~v~~gspA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~   75 (93)
T 3o46_A           34 RIMRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQILAQ   75 (93)
T ss_dssp             EECTTSHHHHHTCCCTTCEEEEETTEESTTSCHHHHHHHHHH
T ss_pred             EECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            578999999999999999999999999999999999999863

>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}

Probab=98.84  E-value=4e-09  Score=67.80  Aligned_cols=42  Identities=36%  Similarity=0.488  Sum_probs=38.8

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      .|.|+|||+++|+|++||+|++|||.++.++++.++.++++.
T Consensus        31 ~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~   72 (85)
T 2i04_A           31 SLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQS   72 (85)
T ss_dssp             EECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHT
T ss_pred             EECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            578999999999999999999999999999999999888763

>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}

Probab=98.84  E-value=4.9e-09  Score=67.10  Aligned_cols=41  Identities=32%  Similarity=0.480  Sum_probs=38.2

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      .|.|+|||+++| |+.||+|++|||.++.++++.++..+++.
T Consensus        29 ~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~   69 (83)
T 2kv8_A           29 CVMRGSPADFVG-LRAGDQILAVNEINVKKASHEDVVKLIGK   69 (83)
T ss_dssp             BCCTTSTTTTTT-CCTTCEEEEETTEECSSCCHHHHHHHHTT
T ss_pred             EeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            578999999999 99999999999999999999999988863

>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A

Probab=98.84  E-value=6e-09  Score=67.83  Aligned_cols=45  Identities=22%  Similarity=0.442  Sum_probs=39.4

Q ss_pred             eEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCC
Q psy1521          45 ILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTP   92 (175)
Q Consensus        45 i~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~   92 (175)
                      ++|..|.++|||+++| |++||+|++|||+.+.  ++.++...++...
T Consensus         6 ~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~--~~~~~~~~l~~~~   50 (91)
T 2zpm_A            6 PVLENVQPNSAASXAG-LQAGDRIVXVDGQPLT--QWVTFVMLVRDNP   50 (91)
T ss_dssp             CBCSEECTTSHHHHTT-CCTTCEEEEETTEECC--CHHHHHHHHHHCT
T ss_pred             eEEEEECCCChHHhcC-CCCCCEEEEECCeEcC--CHHHHHHHHhcCC
Confidence            4688999999999999 9999999999999996  4688888887653

>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}

Probab=98.83  E-value=2.6e-09  Score=73.32  Aligned_cols=42  Identities=33%  Similarity=0.721  Sum_probs=39.8

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      +|.|+|+|+++|+|+.||+|++|||.++.++++.+++.+++.
T Consensus        59 ~V~~gspA~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~  100 (118)
T 3b76_A           59 SVEPGGVISRDGRIKTGDILLNVDGVELTEVSRSEAVALLKR  100 (118)
T ss_dssp             EECTTSHHHHHCSSCTTCEEEEETTEEGGGSCHHHHHHHHHS
T ss_pred             EECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            578999999999999999999999999999999999999875

>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=98.83  E-value=3.6e-09  Score=71.26  Aligned_cols=42  Identities=33%  Similarity=0.521  Sum_probs=39.6

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      +|.|+|||+++|+|++||+|++|||.++.++++.+++.+++.
T Consensus        50 ~v~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   91 (108)
T 2d92_A           50 SLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLAEAVEILKA   91 (108)
T ss_dssp             EECTTCHHHHHTCCCTTCEEEEESSCBCTTCCHHHHHHHHHH
T ss_pred             EECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            578999999999999999999999999999999999999864

>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}

Probab=98.83  E-value=4.7e-09  Score=68.20  Aligned_cols=41  Identities=51%  Similarity=0.735  Sum_probs=38.2

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      .|.|+|||+++|+|++||+|++|||.++.+.++.++..+++
T Consensus        33 ~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~   73 (90)
T 2q9v_A           33 HIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVVQLMQ   73 (90)
T ss_dssp             EECTTSHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHH
T ss_pred             EECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            57899999999999999999999999999999999888875

>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.83  E-value=5.3e-09  Score=69.82  Aligned_cols=41  Identities=37%  Similarity=0.564  Sum_probs=38.4

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      .|.|+|||+++|+|++||+|++|||.++.++++.++..+++
T Consensus        40 ~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~   80 (103)
T 1uep_A           40 AVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMH   80 (103)
T ss_dssp             EECTTSTTGGGTCCCTTCEEEEETTEECTTSCHHHHHHHHH
T ss_pred             EeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            57899999999999999999999999999999999988875

>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1

Probab=98.82  E-value=3.3e-09  Score=68.89  Aligned_cols=42  Identities=26%  Similarity=0.588  Sum_probs=38.1

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      +|.|+|||++++.|++||+|++|||.++.+++++++.++++.
T Consensus        31 ~V~~gspA~~~agL~~GD~I~~Ing~~v~~~~~~~~~~~l~~   72 (88)
T 1kwa_A           31 RIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLRE   72 (88)
T ss_dssp             EECTTSHHHHHTCCCTTCEEEEETTEEGGGSCHHHHHHHHHH
T ss_pred             EECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhc
Confidence            578999999955599999999999999999999999999864

>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A

Probab=98.82  E-value=2.5e-09  Score=74.28  Aligned_cols=41  Identities=34%  Similarity=0.572  Sum_probs=39.2

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      +|.|+|||+++|+|+.||+|++|||+++.+++|.+++.+|+
T Consensus        61 ~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~  101 (127)
T 1wg6_A           61 SIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLR  101 (127)
T ss_dssp             ECCSSSSTHHHHTSCSCCBEEEETTEESTTSCHHHHHHHHH
T ss_pred             EECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            58899999999999999999999999999999999999987

>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A

Probab=98.81  E-value=3.1e-09  Score=70.44  Aligned_cols=41  Identities=34%  Similarity=0.669  Sum_probs=38.5

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      +|.|+|||+++|+|++||+|++|||.++.+++++++.++++
T Consensus        42 ~V~~gspA~~aG~L~~GD~Il~ING~~v~~~~~~~~~~~l~   82 (97)
T 2ejy_A           42 RILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMK   82 (97)
T ss_dssp             EECSSSHHHHHTCCCTTCEEEEETTBCCCSSCSHHHHHHHH
T ss_pred             EeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            57899999999999999999999999999988899988886

>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*

Probab=98.81  E-value=4.6e-09  Score=68.88  Aligned_cols=41  Identities=24%  Similarity=0.473  Sum_probs=38.6

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      .|.|+|||+++| |+.||+|++|||.++.+++|.++..+++.
T Consensus        35 ~v~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~   75 (95)
T 3r68_A           35 DIEPGSPAEAAG-LKNNDLVVAVNGKSVEALDHDGVVEMIRK   75 (95)
T ss_dssp             CCCTTSHHHHHT-CCTTEEEEEETTEECTTCCHHHHHHHHHT
T ss_pred             EECCCCHHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            578999999999 99999999999999999999999998874

>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A

Probab=98.81  E-value=5.7e-09  Score=70.02  Aligned_cols=42  Identities=31%  Similarity=0.571  Sum_probs=39.0

Q ss_pred             ccCCCChhhhcC-CCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDG-RLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G-~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      .|.|+|||+++| ||+.||+|++|||.++.++++.++..+++.
T Consensus        49 ~V~~~spA~~aG~rL~~GD~Il~ing~~v~~~~~~~~~~~i~~   91 (107)
T 3nfk_A           49 RVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKA   91 (107)
T ss_dssp             EECTTSHHHHSSSCCCTTCEEEEETTEECTTCCHHHHHHHHHC
T ss_pred             EECCCCchHHcCCccCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            578999999999 799999999999999999999999988864

>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.81  E-value=4e-09  Score=72.26  Aligned_cols=41  Identities=32%  Similarity=0.565  Sum_probs=37.9

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      +|.++|||+++|+|+.||+|++|||.++.+++|++++++++
T Consensus        49 ~V~~gspA~~aggL~~GD~Il~Ing~~v~~~~~~~~~~~l~   89 (118)
T 1v6b_A           49 AVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQ   89 (118)
T ss_dssp             ECCTTSHHHHHCSSCTTCEEEEESSCBCTTCBHHHHHHHHH
T ss_pred             EECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            57899999999559999999999999999999999988875

>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}

Probab=98.80  E-value=5.7e-09  Score=70.11  Aligned_cols=42  Identities=31%  Similarity=0.631  Sum_probs=39.4

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      +|.|+|||+++|+|+.||+|++|||.++.++++.+++.+++.
T Consensus        38 ~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   79 (106)
T 4amh_A           38 KIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEAVTALKN   79 (106)
T ss_dssp             EECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHS
T ss_pred             EECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhC
Confidence            578999999999999999999999999999999999988864

>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A

Probab=98.80  E-value=5.7e-09  Score=72.83  Aligned_cols=41  Identities=29%  Similarity=0.462  Sum_probs=38.9

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      +|.|+|||+++|+|++||+|++|||+++.+++|+++..+++
T Consensus        71 ~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~  111 (131)
T 1wfg_A           71 KVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIIL  111 (131)
T ss_dssp             EECTTSHHHHTSCCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             EECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            57899999999999999999999999999999999999885

>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.80  E-value=5.4e-09  Score=71.43  Aligned_cols=42  Identities=33%  Similarity=0.654  Sum_probs=39.6

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      +|.|+|||+++|+|++||+|++|||.++.++++.+++.+++.
T Consensus        55 ~v~~~s~A~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~   96 (117)
T 1ujd_A           55 KILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQ   96 (117)
T ss_dssp             EECTTCHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHSC
T ss_pred             EECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhc
Confidence            578999999999999999999999999999999999999864

>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens}

Probab=98.80  E-value=1.7e-09  Score=81.82  Aligned_cols=50  Identities=20%  Similarity=0.413  Sum_probs=46.7

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      |++|..|.++|||+++| |++||+|++|||+.+.++++.++..+|+..+..
T Consensus        34 gv~V~~V~~gSpA~~aG-L~~GD~Il~VNG~~V~~~s~~dl~~~l~~~g~~   83 (216)
T 2krg_A           34 GQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDE   83 (216)
T ss_dssp             SCBEEEECTTSHHHHHT-CCTTCBCCEETTEECTTCCTHHHHHHHHHHCSE
T ss_pred             CeEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhcCCe
Confidence            78999999999999999 999999999999999988999999999876554

>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5

Probab=98.79  E-value=9.9e-09  Score=66.44  Aligned_cols=45  Identities=18%  Similarity=0.085  Sum_probs=37.9

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLT   91 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~   91 (175)
                      |+.|..+.++|+|+++| |++||+|++|||+.+.+  +.+...+++..
T Consensus        20 G~~V~~~~~~s~A~~aG-l~~GD~I~~ing~~v~~--~~d~~~~~~~~   64 (87)
T 2i6v_A           20 GYRVSPGKDPVLFESIG-LQDGDMAVALNGLDLTD--PNVMNTLFQSM   64 (87)
T ss_dssp             EEEEEECSCHHHHHHTT-CCTTCEEEEETTEETTC--HHHHHHHHHTG
T ss_pred             EEEEEeCCCCCHHHHCC-CCCCCEEEEECCEECCC--HHHHHHHHHhc
Confidence            56778888888889999 99999999999999964  67777777653

>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A

Probab=98.79  E-value=6e-09  Score=71.63  Aligned_cols=41  Identities=27%  Similarity=0.494  Sum_probs=38.2

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      +|.|+|||+++|+|+.||+|++|||.++.++++.+++.+++
T Consensus        59 ~V~~~spA~~aggL~~GD~Il~VnG~~v~~~~~~~~~~~l~   99 (120)
T 2iwo_A           59 MMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLLK   99 (120)
T ss_dssp             EECTTSHHHHHTCCCTTCEEEEETTEECTTCBHHHHHHHHH
T ss_pred             EECCCCHHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            57899999999559999999999999999999999999886

>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1

Probab=98.78  E-value=7.4e-09  Score=67.52  Aligned_cols=41  Identities=22%  Similarity=0.291  Sum_probs=38.1

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      .|.|+|||+++| |+.||+|++|||.++.++++.++..+++.
T Consensus        30 ~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~l~~   70 (91)
T 2f5y_A           30 AVDSGGPAERAG-LQQLDTVLQLNERPVEHWKCVELAHEIRS   70 (91)
T ss_dssp             EECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHT
T ss_pred             EECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            578999999999 99999999999999999999999988864

>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A

Probab=98.78  E-value=8e-09  Score=67.22  Aligned_cols=41  Identities=29%  Similarity=0.618  Sum_probs=38.5

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      .|.|+|||+++| |+.||+|++|||.++.++++.++..+++.
T Consensus        33 ~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~   73 (91)
T 1g9o_A           33 LVEPGSPAEKAG-LLAGDRLVEVNGENVEKETHQQVVSRIRA   73 (91)
T ss_dssp             EECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHT
T ss_pred             EECCCCHHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            578999999999 99999999999999999999999999874

>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A

Probab=98.78  E-value=8.5e-09  Score=67.77  Aligned_cols=42  Identities=26%  Similarity=0.670  Sum_probs=39.0

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      .|.++|||+++|+|+.||+|++|||.++.++++.++..+++.
T Consensus        39 ~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~   80 (96)
T 1d5g_A           39 AVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRN   80 (96)
T ss_dssp             EECTTSHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHHHS
T ss_pred             EeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            578999999999999999999999999999999999988863

>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}

Probab=98.78  E-value=8.4e-09  Score=66.69  Aligned_cols=40  Identities=28%  Similarity=0.429  Sum_probs=37.5

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      .|.|+|||+++| |++||+|++|||.++.++++.++..+++
T Consensus        33 ~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~   72 (88)
T 2uzc_A           33 SLKDGGKAAQAN-VRIGDVVLSIDGINAQGMTHLEAQNKIK   72 (88)
T ss_dssp             EECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             EECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            578999999999 9999999999999999999999988876

>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1

Probab=98.78  E-value=7.9e-09  Score=70.69  Aligned_cols=42  Identities=33%  Similarity=0.648  Sum_probs=39.6

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      +|.++|||+++|+|+.||+|++|||.++.++++.+++.+++.
T Consensus        60 ~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~  101 (117)
T 2byg_A           60 KIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKN  101 (117)
T ss_dssp             EECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHT
T ss_pred             EECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            578999999999999999999999999999999999999874

>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=98.78  E-value=2.4e-09  Score=74.63  Aligned_cols=42  Identities=24%  Similarity=0.411  Sum_probs=39.2

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      +|.|+|+|+++|+|+.||+|++|||+++.+++|++++.+++.
T Consensus        63 ~V~~gs~A~~aggL~~GD~Il~Vng~~v~~~~~~~~~~~l~~  104 (130)
T 1i16_A           63 RIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKA  104 (130)
T ss_dssp             EECSSCCCSSSCCCCTTCCEEECSSCBGGGSCHHHHHHHHHT
T ss_pred             EECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            578999999996699999999999999999999999999975

>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster}

Probab=98.78  E-value=6.5e-09  Score=69.93  Aligned_cols=42  Identities=21%  Similarity=0.404  Sum_probs=39.0

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      +|.|+|||+++|+|++||+|++|||.++.+.++.++..+++.
T Consensus        31 ~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~   72 (106)
T 2la8_A           31 DLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKG   72 (106)
T ss_dssp             ECCTTSCHHHHTTCCTTCEEEEESSCBCSSSCHHHHHHHHHS
T ss_pred             EECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhC
Confidence            578999999999999999999999999999999998888764

>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A

Probab=98.77  E-value=8.4e-09  Score=67.02  Aligned_cols=41  Identities=32%  Similarity=0.506  Sum_probs=38.4

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      .|.|+|||+++| |++||+|++|||.++.+++|.++..+++.
T Consensus        34 ~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~   74 (90)
T 2he4_A           34 SVDPGSPAARSG-LRAQDRLIEVNGQNVEGLRHAEVVASIKA   74 (90)
T ss_dssp             EECTTSHHHHHT-CCTTCEEEEETTEECTTSCHHHHHHHHTT
T ss_pred             EECCCChHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            578999999999 99999999999999999999999998874

>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.77  E-value=8.3e-09  Score=67.37  Aligned_cols=40  Identities=28%  Similarity=0.570  Sum_probs=37.7

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      +|.|+|||+++| |+.||+|++|||.++.+.++.++..+++
T Consensus        37 ~V~~~spA~~aG-L~~GD~Il~Ing~~v~~~~~~~~~~~l~   76 (90)
T 1y7n_A           37 SLMRGGIAERGG-VRVGHRIIEINGQSVVATPHEKIVHILS   76 (90)
T ss_dssp             EECTTSHHHHHT-CCSSCEEEEETTEECTTSCHHHHHHHHH
T ss_pred             EECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            578999999999 9999999999999999999999998885

>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A

Probab=98.77  E-value=1e-08  Score=66.76  Aligned_cols=41  Identities=32%  Similarity=0.468  Sum_probs=38.4

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      .|.|+|||+++| |+.||+|++|||.++.++++.++..+++.
T Consensus        33 ~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~   73 (91)
T 2vsp_A           33 EVQKGGPADLAG-LEDEDVIIEVNGVNVLDEPYEKVVDRIQS   73 (91)
T ss_dssp             CCCTTSHHHHTT-CCTTCEEEEETTEECTTSCHHHHHHHHTT
T ss_pred             EECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            578999999999 99999999999999999999999998874

>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}

Probab=98.77  E-value=9.5e-09  Score=67.44  Aligned_cols=41  Identities=34%  Similarity=0.665  Sum_probs=38.1

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      +|.|+|||+++|+|++||+|++|||.++.++++.++...++
T Consensus        35 ~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~   75 (95)
T 2vwr_A           35 DLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQIIQ   75 (95)
T ss_dssp             EECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             EeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            57899999999999999999999999999999998888775

>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}

Probab=98.77  E-value=9.5e-09  Score=66.99  Aligned_cols=41  Identities=56%  Similarity=0.934  Sum_probs=38.2

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      .|.|+|||+++|+|++||+|++|||.++.++++.++..+++
T Consensus        35 ~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~   75 (92)
T 2qg1_A           35 DIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLK   75 (92)
T ss_dssp             EECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             EECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            57899999999999999999999999999999999888875

>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A

Probab=98.77  E-value=9.9e-09  Score=66.26  Aligned_cols=41  Identities=20%  Similarity=0.349  Sum_probs=38.2

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      .|.|+|||+++| |++||+|++|||.++.++++.++.++++.
T Consensus        32 ~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~   72 (87)
T 2pa1_A           32 KVAERGKAKDAD-LRPGDIIVAINGESAEGMLHAEAQSKIRQ   72 (87)
T ss_dssp             EECSSSHHHHTT-CCTTCEEEEETTEESTTCCHHHHHHHHHT
T ss_pred             EECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            578999999999 99999999999999999999999998875

>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A

Probab=98.77  E-value=9.6e-09  Score=67.72  Aligned_cols=41  Identities=22%  Similarity=0.537  Sum_probs=38.6

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      .|.|+|||+++|+|+.||+|++|||.++.++++.++..+++
T Consensus        36 ~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~   76 (97)
T 1n7e_A           36 SLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQ   76 (97)
T ss_dssp             EECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             EECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            57899999999999999999999999999999999998886

>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A

Probab=98.76  E-value=8.2e-09  Score=66.27  Aligned_cols=40  Identities=30%  Similarity=0.517  Sum_probs=37.4

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      +|.|+|||+++| |++||+|++|||.++.++++.++...++
T Consensus        31 ~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~~~   70 (85)
T 1rgw_A           31 RITPGSKAAQSQ-LSQGDLVVAIDGVNTDTMTHLEAQNKIK   70 (85)
T ss_dssp             EECTTSHHHHSS-CCCCSBEEEETTEECTTCCHHHHHHHHT
T ss_pred             EECCCCHHHHcC-CCCCCEEEEECCEECCCcCHHHHHHHHH
Confidence            578999999999 9999999999999999999999998876

>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A

Probab=98.76  E-value=9.1e-09  Score=71.04  Aligned_cols=42  Identities=31%  Similarity=0.534  Sum_probs=39.3

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      +|.|||||+++|+|+.||+|++|||.++.++++.++..+++.
T Consensus        51 ~v~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~   92 (125)
T 3hpk_A           51 QVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQE   92 (125)
T ss_dssp             EECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHH
T ss_pred             EeCCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            578999999999999999999999999999999999998873

>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A

Probab=98.76  E-value=1.2e-08  Score=67.23  Aligned_cols=42  Identities=21%  Similarity=0.397  Sum_probs=38.8

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      +|.|+|||+++|+|+.||+|++|||.++.++++.++..+++.
T Consensus        37 ~V~~~spA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~~~~   78 (96)
T 2qkv_A           37 DLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVSYALFKG   78 (96)
T ss_dssp             EECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHHT
T ss_pred             EeCCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHhc
Confidence            578999999999999999999999999999999988888764

>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.76  E-value=2.5e-08  Score=66.49  Aligned_cols=41  Identities=20%  Similarity=0.385  Sum_probs=38.3

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      .|.|+|||+++|+|+.||+|++|||.++.++++.+++.+++
T Consensus        44 ~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~   84 (104)
T 2djt_A           44 GLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERIR   84 (104)
T ss_dssp             EECTTCHHHHHCSCCTTCBEEEETTEECTTCCHHHHHHHHH
T ss_pred             EECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            57899999999999999999999999999999999988876

>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}

Probab=98.76  E-value=1e-08  Score=67.50  Aligned_cols=41  Identities=34%  Similarity=0.639  Sum_probs=38.6

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      .|.|+|||+++|+|++||+|++|||.++.++++.++..+++
T Consensus        38 ~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~   78 (97)
T 2jil_A           38 SVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILK   78 (97)
T ss_dssp             EECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHH
T ss_pred             EECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            57899999999999999999999999999999999998886

>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A

Probab=98.76  E-value=7.3e-09  Score=68.18  Aligned_cols=42  Identities=17%  Similarity=0.341  Sum_probs=38.9

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhCC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG   44 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~g   44 (175)
                      .|.|+|||+++| |+.||+|++|||.++.+++++++..+++..
T Consensus        41 ~V~~~spA~~aG-L~~GD~Il~vng~~v~~~~~~~l~~~l~~~   82 (94)
T 3kzd_A           41 SVKETGLASKKG-LKAGDEILEINNRAADALNSSMLKDFLSQP   82 (94)
T ss_dssp             EECTTSHHHHTT-CCTTCEEEEETTEEGGGCCHHHHHHHHHSS
T ss_pred             EECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhCC
Confidence            578999999999 999999999999999999999999988753

>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}

Probab=98.76  E-value=7.5e-09  Score=67.12  Aligned_cols=40  Identities=33%  Similarity=0.584  Sum_probs=37.4

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      .|.|+|||+++| |++||+|++|||.++.++++.++..+++
T Consensus        33 ~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~   72 (89)
T 2q3g_A           33 RLTPGGKAAQAG-VAVGDWVLSIDGENAGSLTHIEAQNKIR   72 (89)
T ss_dssp             EECTTSHHHHTT-CCTTCEEEEETTEEGGGCCHHHHHHHHH
T ss_pred             EECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            578999999999 9999999999999999999999988876

>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*

Probab=98.76  E-value=1.1e-08  Score=66.59  Aligned_cols=41  Identities=34%  Similarity=0.541  Sum_probs=38.0

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      .|.|+|||+++| |++||+|++|||.++.++++.++..+++.
T Consensus        33 ~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~   73 (91)
T 2pkt_A           33 RVTPGSKAALAN-LCIGDVITAIDGENTSNMTHLEAQNRIKG   73 (91)
T ss_dssp             EECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHT
T ss_pred             EECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            578999999999 99999999999999999999999888864

>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}

Probab=98.75  E-value=1.1e-08  Score=67.46  Aligned_cols=42  Identities=36%  Similarity=0.684  Sum_probs=38.9

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      .|.|+|||+++|+|++||+|++|||.++.++++.++...++.
T Consensus        36 ~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~   77 (98)
T 2opg_A           36 EVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQ   77 (98)
T ss_dssp             EECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHT
T ss_pred             EECCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            578999999999999999999999999999999999888863

>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A

Probab=98.75  E-value=1.1e-08  Score=67.35  Aligned_cols=40  Identities=35%  Similarity=0.496  Sum_probs=37.4

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      .|.|+|||+++| |++||+|++|||.++.+++++++..+++
T Consensus        43 ~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~   82 (96)
T 2ego_A           43 RVHESSPAQLAG-LTPGDTIASVNGLNVEGIRHREIVDIIK   82 (96)
T ss_dssp             EECTTCHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             EECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            578999999999 9999999999999999999999988875

>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1

Probab=98.75  E-value=1e-08  Score=70.10  Aligned_cols=41  Identities=39%  Similarity=0.688  Sum_probs=38.8

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      +|.|+|||+++|+|++||+|++|||.++.++++.+++.+++
T Consensus        59 ~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   99 (117)
T 2fne_A           59 TVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILK   99 (117)
T ss_dssp             EECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             EECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            57899999999999999999999999999999999998886

>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A

Probab=98.75  E-value=9.3e-09  Score=66.34  Aligned_cols=40  Identities=38%  Similarity=0.620  Sum_probs=36.9

Q ss_pred             ccCCCChhhhc-CCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATD-GRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~-G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      +|.|+|||+++ | |+.||+|++|||.++.++++.++..+++
T Consensus        34 ~V~~gspA~~~ag-l~~GD~I~~vng~~v~~~~~~~~~~~~~   74 (87)
T 4e34_A           34 EIHPGQPADRCGG-LHVGDAILAVNGVNLRDTKHKEAVTILS   74 (87)
T ss_dssp             EECTTSHHHHHSC-CCTTEEEEEETTEECTTCCHHHHHHHHH
T ss_pred             EECCCCHHHhcCC-CCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            57899999995 6 9999999999999999999999998876

>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.75  E-value=1.2e-08  Score=67.67  Aligned_cols=40  Identities=23%  Similarity=0.295  Sum_probs=37.7

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      .|.|+|||+++| |+.||+|++|||.++.++++.++..+++
T Consensus        42 ~V~~~spA~~aG-L~~GD~I~~vng~~v~~~~~~~~~~~l~   81 (100)
T 1whd_A           42 AVDSGGPAERAG-LQQLDTVLQLNERPVEHWKCVELAHEIR   81 (100)
T ss_dssp             BCCTTSHHHHHT-CCSSCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             EECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            678999999999 9999999999999999999999998886

>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A

Probab=98.75  E-value=1e-08  Score=67.03  Aligned_cols=42  Identities=36%  Similarity=0.680  Sum_probs=38.8

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      .|.|+|||+++|+|++||+|++|||.++.++++.++..+++.
T Consensus        39 ~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~   80 (94)
T 2fe5_A           39 KIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKN   80 (94)
T ss_dssp             EECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHT
T ss_pred             EECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            578999999999999999999999999999999999888763

>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.75  E-value=1.4e-08  Score=67.57  Aligned_cols=41  Identities=32%  Similarity=0.592  Sum_probs=38.4

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      .|.|+|||+++|+|+.||+|++|||.++.++++.++..+++
T Consensus        42 ~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~   82 (103)
T 1wfv_A           42 RLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIK   82 (103)
T ss_dssp             CBCTTSHHHHHCSSCTTCEEEEETTEECSSCCHHHHHHHHH
T ss_pred             EECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            67899999999999999999999999999999999988875

>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A

Probab=98.75  E-value=1.2e-08  Score=67.76  Aligned_cols=41  Identities=37%  Similarity=0.692  Sum_probs=38.5

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      .|.|+|+|+++|+|+.||+|++|||.++.++++.++..+++
T Consensus        43 ~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~   83 (101)
T 2jik_A           43 RIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFR   83 (101)
T ss_dssp             EECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHH
T ss_pred             EECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            57899999999999999999999999999999999988886

>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens}

Probab=98.75  E-value=1.2e-08  Score=69.10  Aligned_cols=40  Identities=28%  Similarity=0.273  Sum_probs=37.6

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      .|.|+|||+++| |+.||+|++|||.++.+|++.++.++++
T Consensus        50 ~V~~gspA~~AG-L~~GD~Il~VnG~~v~~~~~~dv~~~i~   89 (109)
T 2vsv_A           50 FLDPYCSASVAG-AREGDYIVSIQLVDCKWLTLSEVMKLLK   89 (109)
T ss_dssp             EECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             EECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            578999999999 9999999999999999999999998886

>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.75  E-value=9.3e-09  Score=70.28  Aligned_cols=42  Identities=31%  Similarity=0.538  Sum_probs=39.6

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      +|.|+|+|+++|+|++||+|++|||.++.+++++++..+++.
T Consensus        48 ~V~~~spA~~aG~l~~GD~Il~Ing~~v~~~~~~~~~~~l~~   89 (117)
T 1v62_A           48 RIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLAS   89 (117)
T ss_dssp             ECCTTSHHHHHTCCCTTCBEEEETTEETTSCCHHHHHHHHHS
T ss_pred             EECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            578999999999999999999999999999999999999863

>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.73  E-value=1.5e-08  Score=66.35  Aligned_cols=41  Identities=20%  Similarity=0.374  Sum_probs=38.3

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      .|.|+|||+++| |++||+|++|||.++.++++.++..+++.
T Consensus        36 ~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~   76 (94)
T 1vb7_A           36 KVTERGKAEAAD-LRPGDIIVAINGQSAENMLHAEAQSKIRQ   76 (94)
T ss_dssp             CBCTTSSHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHT
T ss_pred             EECCCCHHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            588999999999 99999999999999999999999988874

>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A

Probab=98.73  E-value=1.3e-08  Score=67.59  Aligned_cols=42  Identities=33%  Similarity=0.560  Sum_probs=38.7

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      .|.|+|||+++|+|++||+|++|||.++.++++.++..+++.
T Consensus        40 ~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~   81 (102)
T 2i1n_A           40 KIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHSRAVEALKE   81 (102)
T ss_dssp             EECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHH
T ss_pred             EECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            578999999999999999999999999999999998888763

>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A

Probab=98.73  E-value=1.2e-08  Score=70.96  Aligned_cols=42  Identities=36%  Similarity=0.488  Sum_probs=39.2

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      .|.++|+|+++|+|+.||+|++|||.++.+++|.++..+++.
T Consensus        49 ~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~   90 (129)
T 2kpk_A           49 SLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQS   90 (129)
T ss_dssp             EECTTSHHHHHSSCCTTCEEEEETTEECTTSCHHHHHHHHHH
T ss_pred             EECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            578999999999999999999999999999999999988863

>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens}

Probab=98.73  E-value=1e-08  Score=68.45  Aligned_cols=42  Identities=36%  Similarity=0.574  Sum_probs=37.9

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      +|.|+|||++++.|+.||+|++|||.++.++++.+++.+++.
T Consensus        41 ~V~~~s~A~~a~gL~~GD~Il~Ing~~v~~~~~~~~~~~l~~   82 (103)
T 2dc2_A           41 EIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQ   82 (103)
T ss_dssp             EECTTSHHHHHTCCCSSEEEEEETTEESTTSCHHHHHHHHHH
T ss_pred             EECCCCHHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            578999999973399999999999999999999999999863

>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.73  E-value=1.7e-08  Score=66.11  Aligned_cols=40  Identities=28%  Similarity=0.351  Sum_probs=37.2

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      .|.|+|||+++| |++||+|++|||.++.++++.++..+++
T Consensus        38 ~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~   77 (94)
T 2eeg_A           38 RVHAGSKAALAA-LCPGDLIQAINGESTELMTHLEAQNRIK   77 (94)
T ss_dssp             CCCSSSHHHHTT-CCTTCEEEEETTEETTTCCHHHHHHHHH
T ss_pred             EECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            578999999999 9999999999999999999998888776

>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0

Probab=98.73  E-value=1.5e-08  Score=67.75  Aligned_cols=40  Identities=25%  Similarity=0.508  Sum_probs=37.5

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      .|.|+|||+++| |+.||+|++|||.++.++++.++..+++
T Consensus        32 ~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~   71 (106)
T 3ngh_A           32 VIEEGSPAEKAG-LLDGDRVLRINGVFVDKEEHAQVVELVR   71 (106)
T ss_dssp             CCCTTSHHHHTT-CCTTCEEEEETTEECTTSCHHHHHHHHH
T ss_pred             EeCCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            578999999999 9999999999999999999999888875

>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A

Probab=98.73  E-value=1.3e-08  Score=68.76  Aligned_cols=41  Identities=44%  Similarity=0.796  Sum_probs=38.5

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      .|.|+|||+++|+|+.||+|++|||.++.++++.++..+++
T Consensus        45 ~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~   85 (111)
T 2koj_A           45 NILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLR   85 (111)
T ss_dssp             EECSSSHHHHHCSSCTTCEEEEETTEECTTSCHHHHHHHHH
T ss_pred             EECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            57899999999999999999999999999999999998886

>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=98.73  E-value=1.6e-08  Score=68.83  Aligned_cols=42  Identities=45%  Similarity=0.716  Sum_probs=39.3

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      .|.|+|||+++|+|+.||+|++|||.++.++++.++..+++.
T Consensus        49 ~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~   90 (116)
T 2dm8_A           49 EVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEAITALRQ   90 (116)
T ss_dssp             CCCSSSHHHHHTCCCTTCEEEEETTEECSSSCHHHHHHHHHT
T ss_pred             EECCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            588999999999999999999999999999999999988873

>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A

Probab=98.73  E-value=1.4e-08  Score=67.95  Aligned_cols=42  Identities=48%  Similarity=0.696  Sum_probs=39.1

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      .|.|+|||+++|+|+.||+|++|||.++.++++.++..+++.
T Consensus        44 ~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~~~~   85 (106)
T 3axa_A           44 SVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTR   85 (106)
T ss_dssp             EEBTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHT
T ss_pred             EECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            578999999999999999999999999999999999988853

>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}

Probab=98.73  E-value=1.1e-08  Score=69.27  Aligned_cols=41  Identities=32%  Similarity=0.536  Sum_probs=38.4

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      +|.|+|||+++|+|+.||+|++|||.++.++++.++..+++
T Consensus        41 ~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~   81 (113)
T 2g5m_B           41 TVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLR   81 (113)
T ss_dssp             ECCTTSHHHHHTCSCTTCBEEEETTEECSSCCHHHHHHHHH
T ss_pred             EECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHh
Confidence            57899999999999999999999999999999999888875

>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A

Probab=98.73  E-value=1.3e-08  Score=68.03  Aligned_cols=42  Identities=31%  Similarity=0.638  Sum_probs=39.0

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      +|.|+|||+++|+|+.||+|++|||.++.+.++.+++..++.
T Consensus        39 ~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~   80 (105)
T 2awx_A           39 KIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAVTALKN   80 (105)
T ss_dssp             EECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHS
T ss_pred             EECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            578999999999999999999999999999999999888863

>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1

Probab=98.72  E-value=1.5e-08  Score=66.78  Aligned_cols=41  Identities=39%  Similarity=0.645  Sum_probs=38.2

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      .|.|+|||+++|+|++||+|++|||.++.++++.++..+++
T Consensus        43 ~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~   83 (98)
T 1ihj_A           43 GIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIK   83 (98)
T ss_dssp             EECTTSHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             EECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHh
Confidence            57899999999999999999999999999999998888875

>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.72  E-value=1e-08  Score=68.88  Aligned_cols=41  Identities=37%  Similarity=0.574  Sum_probs=38.5

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      .|.|+|||+++|+|+.||+|++|||.++.++++.++..+++
T Consensus        46 ~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~   86 (107)
T 1wf8_A           46 TVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLR   86 (107)
T ss_dssp             EECTTCHHHHHCSSCTTCBEEEETTEECBSCCHHHHHHHHH
T ss_pred             EeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHh
Confidence            57899999999999999999999999999999999988875

>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1

Probab=98.72  E-value=1.5e-08  Score=65.87  Aligned_cols=40  Identities=23%  Similarity=0.296  Sum_probs=36.7

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      .|.|+|||+++| |++||+|++|||.++.++++.++..+++
T Consensus        38 ~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~~~   77 (91)
T 1m5z_A           38 NIRPAGPGDLGG-LKPYDRLLQVNHVRTRDFDCCLVVPLIA   77 (91)
T ss_dssp             EECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             EECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            578999999999 9999999999999999999988877765

>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.72  E-value=1.5e-08  Score=67.67  Aligned_cols=41  Identities=29%  Similarity=0.561  Sum_probs=38.3

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      .|.|+|||+++| |+.||+|++|||.++.+++++++.++++.
T Consensus        47 ~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~   87 (104)
T 1wi2_A           47 KVIPDSDAHRAG-LQEGDQVLAVNDVDFQDIEHSKAVEILKT   87 (104)
T ss_dssp             EECTTSHHHHHT-CCTTCEEEEETTEECSSCCHHHHHHHHHH
T ss_pred             EeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhC
Confidence            578999999999 99999999999999999999999998874

>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1

Probab=98.72  E-value=1.6e-08  Score=67.30  Aligned_cols=42  Identities=33%  Similarity=0.581  Sum_probs=39.2

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      .|.|+|||+++|+|++||+|++|||.++.++++.++..+++.
T Consensus        45 ~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~   86 (103)
T 2fcf_A           45 HVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRK   86 (103)
T ss_dssp             EECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHT
T ss_pred             EeCCCCcHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            578999999999999999999999999999999999998864

>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A*

Probab=98.72  E-value=1.6e-08  Score=68.09  Aligned_cols=40  Identities=28%  Similarity=0.520  Sum_probs=37.6

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      .|.++|+|+++| |+.||+|++|||.++.+++|.++..+++
T Consensus        51 ~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~l~   90 (109)
T 1q3o_A           51 SVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGHRQVVNMIR   90 (109)
T ss_dssp             EECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             EECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            478999999999 9999999999999999999999998876

>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.72  E-value=1.2e-08  Score=70.69  Aligned_cols=42  Identities=29%  Similarity=0.438  Sum_probs=39.6

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      .|.|+|||+++|+|+.||+|++|||.++.+.++.++..+++.
T Consensus        55 ~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~s~~d~~~~l~~   96 (126)
T 1wif_A           55 HLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQN   96 (126)
T ss_dssp             CCCTTSSGGGCSSSCTTCBEEEESSSCCTTCCHHHHHHHHTS
T ss_pred             EECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhc
Confidence            688999999999999999999999999999999999999874

>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}

Probab=98.72  E-value=1.4e-08  Score=70.86  Aligned_cols=40  Identities=28%  Similarity=0.520  Sum_probs=37.9

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      +|.|+|+|+++| |+.||+|++|||.++.++++.+++.+++
T Consensus        71 ~V~~gspA~~aG-L~~GD~Il~Vng~~v~~~~~~~~~~~l~  110 (132)
T 3l4f_D           71 SVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGHRQVVNMIR  110 (132)
T ss_dssp             EECTTSGGGGGT-CCTTCEEEEESSSBCTTSCHHHHHHHHH
T ss_pred             EECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            578999999999 9999999999999999999999998886

>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}

Probab=98.71  E-value=2.9e-08  Score=79.94  Aligned_cols=46  Identities=28%  Similarity=0.483  Sum_probs=41.3

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLT   91 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~   91 (175)
                      .|++|..|.++|||+++| |++||+|++|||+.+.  +..+...+++..
T Consensus       263 ~G~~V~~V~~~spA~~aG-L~~GDvI~~ing~~v~--~~~~l~~~l~~~  308 (345)
T 3stj_A          263 RGAFVSEVLPGSGSAKAG-VKAGDIITSLNGKPLN--SFAELRSRIATT  308 (345)
T ss_dssp             SSEEEEEECTTSHHHHHT-CCTTCEECEETTEECS--CHHHHHHHHHTS
T ss_pred             ceEEEEEeccCChHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHhc
Confidence            488999999999999999 9999999999999996  467888888763

>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.71  E-value=1.4e-08  Score=67.87  Aligned_cols=42  Identities=29%  Similarity=0.628  Sum_probs=39.4

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      .|.|+|||+++|+|+.||+|++|||.++.++++.+++.+++.
T Consensus        44 ~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~   85 (105)
T 1wha_A           44 RIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTA   85 (105)
T ss_dssp             ECCTTSSHHHHSSCCTTCEEEEESSCBCTTCCHHHHHHHHTS
T ss_pred             EeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            578999999999999999999999999999999999999874

>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}

Probab=98.71  E-value=2.1e-08  Score=68.34  Aligned_cols=41  Identities=27%  Similarity=0.558  Sum_probs=38.5

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCC-CCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVR-DKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~-~~~~~~~~~~l~   42 (175)
                      .|.|+|||+++|+|+.||+|++|||.++. ++++.++..+++
T Consensus        55 ~V~~~spA~~aG~l~~GD~Il~ing~~v~~~~~~~~~~~~l~   96 (117)
T 2o2t_A           55 EIQEGSVAHRDGRLKETDQILAINGQALDQTITHQQAISILQ   96 (117)
T ss_dssp             CCCTTSHHHHHCCCCTTCEEEEETTEECCTTSCHHHHHHHHH
T ss_pred             EECCCCHHHHCCCCCCCCEEEEECCEECCCCCCHHHHHHHHH
Confidence            68899999999999999999999999998 999999998876

>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}

Probab=98.71  E-value=1.7e-08  Score=66.56  Aligned_cols=41  Identities=24%  Similarity=0.428  Sum_probs=38.1

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      .|.|+|||+++| |++||+|++|||.++.++++.++..+++.
T Consensus        39 ~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~   79 (98)
T 2jxo_A           39 SVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIRA   79 (98)
T ss_dssp             EECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHT
T ss_pred             EECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            578999999999 99999999999999999999999988864

>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}

Probab=98.71  E-value=1.3e-08  Score=68.37  Aligned_cols=41  Identities=34%  Similarity=0.653  Sum_probs=38.3

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      .|.|+|||+++|+|++||+|++|||.++.++++.++..+++
T Consensus        50 ~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~   90 (108)
T 2jre_A           50 SLIPGSAAALDGRIEPNDKILRVDDVNVQGMAQSDVVEVLR   90 (108)
T ss_dssp             EECTTSHHHHHSSCCSSEEEEEETTEECTTSCHHHHHHHHH
T ss_pred             EeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            57899999999999999999999999999999999988876

>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}

Probab=98.71  E-value=1.3e-08  Score=70.52  Aligned_cols=41  Identities=27%  Similarity=0.539  Sum_probs=38.9

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCC-CCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVR-DKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~-~~~~~~~~~~l~   42 (175)
                      .|.|+|||+++|+|+.||+|++|||.++. ++++.+++.+++
T Consensus        60 ~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~~l~  101 (128)
T 2db5_A           60 DVQPGSVADRDQRLKENDQILAINHTPLDQNISHQQAIALLQ  101 (128)
T ss_dssp             CCCTTSHHHHTCCCCSSCBEEEESSCBCSTTSCHHHHHHHHH
T ss_pred             EECCCCHHHHcCCCCCCCEEEEECCEECCCCCCHHHHHHHHH
Confidence            57899999999999999999999999997 999999999886

>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}

Probab=98.71  E-value=1.7e-08  Score=67.06  Aligned_cols=41  Identities=22%  Similarity=0.411  Sum_probs=37.8

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      +|.|+|||+++|.|+.||+|++|||.++.+.+++++.++++
T Consensus        43 ~V~~~spA~~~ggl~~GD~I~~Ing~~v~~~~~~~~~~~l~   83 (101)
T 2yt7_A           43 NLLHGGPAERSGALSIGDRLTAINGTSLVGLPLAACQAAVR   83 (101)
T ss_dssp             EECTTSTTGGGSSCCTTCEEEEESSCBCTTSCHHHHHHHHH
T ss_pred             EECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            57899999997779999999999999999999999999886

>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.71  E-value=1.8e-08  Score=69.43  Aligned_cols=42  Identities=26%  Similarity=0.521  Sum_probs=39.4

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      .|.++|+|+++|+|+.||+|++|||+++.++++.++..+++.
T Consensus        50 ~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   91 (123)
T 1ueq_A           50 SVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQS   91 (123)
T ss_dssp             EECTTSHHHHTSCCCTTCEEEEETTEECTTSCHHHHHHHHHT
T ss_pred             EECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            578999999999999999999999999999999999998875

>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine protease, serine- lysine catalytic DYAD, PDZ domain, photosynthesis; 1.80A {Scenedesmus obliquus} SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A

Probab=98.71  E-value=4.7e-08  Score=79.88  Aligned_cols=51  Identities=20%  Similarity=0.289  Sum_probs=45.9

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      ++++|..|.++|||+++| |++||+|++|||+++.+++.+++..+|+.....
T Consensus        99 ~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~  149 (388)
T 1fc6_A           99 KDVVVLTPAPGGPAEKAG-ARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADS  149 (388)
T ss_dssp             SCEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHCBSTTC
T ss_pred             CcEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCCCC
Confidence            478999999999999999 999999999999999999889999999865444

>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A

Probab=98.71  E-value=4.3e-08  Score=64.11  Aligned_cols=42  Identities=40%  Similarity=0.689  Sum_probs=38.5

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhCC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG   44 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~g   44 (175)
                      .|.|+|||+++| |+.||+|++|||.++.++++.+++..++.+
T Consensus        35 ~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~~g   76 (93)
T 2dls_A           35 SVRPGGAAMKAG-VKEGDRIIKVNGTMVTNSSHLEVVKLIKSG   76 (93)
T ss_dssp             EECSSSTTTTTT-CCSSCEEEEETTEECSSSCHHHHHHHHTSS
T ss_pred             EECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhhcCC
Confidence            578999999999 999999999999999999999888888754

>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.70  E-value=1.6e-08  Score=65.99  Aligned_cols=41  Identities=39%  Similarity=0.805  Sum_probs=37.8

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      .|.|+|||+++|.|+.||+|++|||.++.++++.++..+++
T Consensus        36 ~V~~~spA~~aGgl~~GD~I~~vng~~v~~~~~~~~~~~~~   76 (93)
T 2dkr_A           36 RVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLK   76 (93)
T ss_dssp             EECTTSHHHHHCCCCTTCBEEEETTEECTTSCHHHHHHHHH
T ss_pred             EECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            57899999999669999999999999999999999998876

>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}

Probab=98.70  E-value=1.6e-08  Score=66.43  Aligned_cols=41  Identities=29%  Similarity=0.511  Sum_probs=38.1

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      .|.|+|||+++| |+.||+|++|||.++.++++.++..+++.
T Consensus        36 ~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~   76 (96)
T 2v90_A           36 EVDPGLPAKKAG-MQAGDRLVAVAGESVEGLGHEETVSRIQG   76 (96)
T ss_dssp             EECTTSHHHHTT-CCTTEEEEEETTEECTTCCHHHHHHHHHT
T ss_pred             EECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            578999999999 99999999999999999999999988864

>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=98.70  E-value=1.5e-08  Score=68.47  Aligned_cols=41  Identities=44%  Similarity=0.856  Sum_probs=38.5

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      .|.++|+|+++|+|+.||+|++|||+++.++++.++..+++
T Consensus        44 ~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~   84 (111)
T 2dlu_A           44 TIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVLR   84 (111)
T ss_dssp             EECTTSSHHHHTCCCSSCEEEEESSCCCTTSCHHHHHHHHH
T ss_pred             EECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            57899999999999999999999999999999999988876

>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A

Probab=98.70  E-value=2e-08  Score=66.39  Aligned_cols=40  Identities=25%  Similarity=0.366  Sum_probs=37.6

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      .|.|+|||+++| |+.||+|++|||.++.++++.++..+++
T Consensus        40 ~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~   79 (99)
T 3khf_A           40 SVEDGSPAQEAG-LRAGDLITHINGESVLGLVHMDVVELLL   79 (99)
T ss_dssp             EECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             EECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHh
Confidence            578999999999 9999999999999999999999988886

>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.70  E-value=2e-08  Score=65.53  Aligned_cols=41  Identities=29%  Similarity=0.543  Sum_probs=37.9

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      +|.|+|||+++|.|+.||+|++|||.++ +.+++++.++++.
T Consensus        35 ~V~~~spA~~ag~L~~GD~I~~ing~~v-~~~~~~~~~~l~~   75 (91)
T 2e7k_A           35 RILHGGMVAQQGLLHVGDIIKEVNGQPV-GSDPRALQELLRN   75 (91)
T ss_dssp             EECSSSHHHHHCCCCTTCEEEEETTEEC-TTCHHHHHHHHHT
T ss_pred             EECCCCHHHHcCCCCCCCEEEEECCEEC-CCCHHHHHHHHHc
Confidence            5789999999988999999999999999 8899999999874

>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A

Probab=98.70  E-value=1.8e-08  Score=65.47  Aligned_cols=42  Identities=29%  Similarity=0.475  Sum_probs=38.1

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      .|.|+|||+++|.|++||+|++|||.++.++++.++..+++.
T Consensus        36 ~V~~~spA~~aggl~~GD~I~~ing~~v~~~~~~~~~~~~~~   77 (90)
T 1qav_A           36 KIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKK   77 (90)
T ss_dssp             EECTTSHHHHTTCCCTTEEEEEETTEECTTCCHHHHHHHHHT
T ss_pred             EECCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            578999999994499999999999999999999999988864

>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=98.69  E-value=1.7e-08  Score=68.85  Aligned_cols=42  Identities=26%  Similarity=0.464  Sum_probs=39.2

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      .|.++|||+++|+|+.||+|++|||.++.++++.+++.+++.
T Consensus        56 ~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~   97 (117)
T 2ehr_A           56 QVLEDSPAGKTNALKTGDKILEVSGVDLQNASHSEAVEAIKN   97 (117)
T ss_dssp             EECSSSTTTSSCSCCTTCEEEEESSCBCTTCCHHHHHHHHHT
T ss_pred             EeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            578999999999999999999999999999999999988864

>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A

Probab=98.69  E-value=1.7e-08  Score=67.22  Aligned_cols=42  Identities=45%  Similarity=0.686  Sum_probs=38.8

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      .|.|+|||+++|+|+.||+|++|||.++.++++.++...++.
T Consensus        41 ~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~   82 (104)
T 3i4w_A           41 FILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKN   82 (104)
T ss_dssp             EECTTSHHHHHCCCCTTEEEEEETTEECTTCCHHHHHHHHHT
T ss_pred             EECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            578999999999999999999999999999999998887764

>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.69  E-value=2.1e-08  Score=68.69  Aligned_cols=41  Identities=37%  Similarity=0.692  Sum_probs=38.5

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      .|.++|||+++|+|+.||+|++|||.++.++++.+++.+++
T Consensus        53 ~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~   93 (120)
T 2eno_A           53 RIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFR   93 (120)
T ss_dssp             EECSSSHHHHSCCSCTTCEEEEETTEECCSCCHHHHHHHHH
T ss_pred             EECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            57899999999999999999999999999999999988876

>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}

Probab=98.69  E-value=2e-08  Score=69.25  Aligned_cols=41  Identities=34%  Similarity=0.604  Sum_probs=38.7

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      .|.|+|||+++|+|++||+|++|||.++.+++++++..+++
T Consensus        65 ~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~  105 (123)
T 2iwq_A           65 HVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIR  105 (123)
T ss_dssp             EECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             EECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            57899999999999999999999999999999999998886

>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=98.69  E-value=9e-09  Score=70.42  Aligned_cols=41  Identities=24%  Similarity=0.731  Sum_probs=38.6

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      .|.|+|||+++|+|++||+|++|||.++.++++.+++.+++
T Consensus        48 ~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~   88 (119)
T 1x6d_A           48 RVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILR   88 (119)
T ss_dssp             EECSSSHHHHHTSSCTTCBCCEETTEECSSCCHHHHHHHHH
T ss_pred             EECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            57899999999999999999999999999999999998875

>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.68  E-value=2.3e-08  Score=66.63  Aligned_cols=40  Identities=25%  Similarity=0.390  Sum_probs=37.0

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      +|.|+|||+++| |+.||+|++|||.++.++++.++..+++
T Consensus        35 ~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~   74 (103)
T 1wf7_A           35 SLKDGGKASQAH-VRIGDVVLSIDGISAQGMTHLEAQNKIK   74 (103)
T ss_dssp             CCCTTCHHHHTT-CCTTCBEEEETTEECSSCCHHHHHHHHH
T ss_pred             EECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            678999999999 9999999999999999999988887765

>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.68  E-value=5e-08  Score=65.39  Aligned_cols=41  Identities=29%  Similarity=0.511  Sum_probs=37.7

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      +|.|+|||+++|.|+.||+|++|||.++.++++.+++.+++
T Consensus        47 ~V~~~spA~~aggL~~GD~Il~vng~~v~~~~~~~~~~~~~   87 (107)
T 1uhp_A           47 KIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFK   87 (107)
T ss_dssp             EECSSSHHHHTTCCCSSCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             EeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            57899999999449999999999999999999999998886

>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens}

Probab=98.68  E-value=2.6e-08  Score=67.49  Aligned_cols=41  Identities=22%  Similarity=0.510  Sum_probs=38.5

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      .|.++|||+++|+|+.||+|++|||.++.++++.++..+++
T Consensus        55 ~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   95 (112)
T 2r4h_A           55 RLAEDGPAERSGKMRIGDEILEINGETTKNMKHSRAIELIK   95 (112)
T ss_dssp             EECTTSHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             EECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            57899999999999999999999999999999999988876

>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A

Probab=98.68  E-value=2.3e-08  Score=66.60  Aligned_cols=40  Identities=33%  Similarity=0.508  Sum_probs=37.7

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      .|.|+|||+++| |++||+|++|||.++.+++++++...++
T Consensus        51 ~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~   90 (104)
T 3sfj_A           51 RVSEGGPAEIAG-LQIGDKIMQVNGWDMTMVTHDQARKRLT   90 (104)
T ss_dssp             EECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHT
T ss_pred             EECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            578999999999 9999999999999999999999999886

>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A

Probab=98.67  E-value=2.5e-08  Score=69.16  Aligned_cols=41  Identities=39%  Similarity=0.708  Sum_probs=38.5

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      .|.++|||+++|+|+.||+|++|||.++.++++.++..+++
T Consensus        71 ~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~  111 (128)
T 1nf3_C           71 RLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMI  111 (128)
T ss_dssp             EECTTCHHHHHTCCCTTCEEEEETTEESTTCCHHHHHHHHH
T ss_pred             EECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            57899999999989999999999999999999999998885

>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A

Probab=98.67  E-value=1e-07  Score=75.81  Aligned_cols=44  Identities=23%  Similarity=0.464  Sum_probs=40.2

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHc
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRL   90 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~   90 (175)
                      +++|..|.++|||+++| |++||+|++|||+.+.+  ..+...+|+.
T Consensus       245 g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~--~~~l~~~l~~  288 (318)
T 1te0_A          245 GIVVNEVSPDGPAANAG-IQVNDLIISVDNKPAIS--ALETMDQVAE  288 (318)
T ss_dssp             CEEEEEECTTSTTTTTC-CCTTCCEEEETTEECCC--HHHHHHHHHT
T ss_pred             cEEEEEeCCCChHHHCC-CCCCCEEEEECCEEcCC--HHHHHHHHHh
Confidence            78999999999999999 99999999999999965  6788888875

>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens}

Probab=98.67  E-value=2.5e-08  Score=68.57  Aligned_cols=41  Identities=44%  Similarity=0.784  Sum_probs=38.4

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      .|.|+|||+++|+|++||+|++|||+++.+++++++.++++
T Consensus        64 ~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~l~  104 (121)
T 2kom_A           64 NILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLR  104 (121)
T ss_dssp             EECTTSHHHHHTCCCSSSEEEEETTEECTTSCHHHHHHHHH
T ss_pred             EECCCChHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHh
Confidence            57899999999999999999999999999999999988876

>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.67  E-value=2.5e-08  Score=66.72  Aligned_cols=40  Identities=38%  Similarity=0.659  Sum_probs=37.3

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      .|.|+|||+++| |++||+|++|||.++.++++.++...++
T Consensus        38 ~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~~~   77 (106)
T 2eei_A           38 DITPQGVAMRAG-VLADDHLIEVNGENVEDASHEEVVEKVK   77 (106)
T ss_dssp             CCCTTSHHHHHT-CCSSEEEEEETTEECTTCCHHHHHHHHH
T ss_pred             EECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            578999999999 9999999999999999999999888775

>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.66  E-value=2.5e-08  Score=67.23  Aligned_cols=42  Identities=31%  Similarity=0.543  Sum_probs=39.0

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      .|.|+|||+++|+|++||+|++|||.++.++++.+++.+++.
T Consensus        42 ~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~   83 (110)
T 1um1_A           42 TLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRH   83 (110)
T ss_dssp             EECTTSHHHHHSCCCTTCEEEEESSCBCSSCCHHHHHHHHHT
T ss_pred             EECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            578999999999999999999999999999999999888764

>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.66  E-value=3.3e-08  Score=65.91  Aligned_cols=41  Identities=29%  Similarity=0.508  Sum_probs=38.3

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      .|.|+|||+++| |++||+|++|||.++.++++.++..+++.
T Consensus        35 ~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~   75 (103)
T 1v5l_A           35 RITPGSKAAAAN-LCPGDVILAIDGFGTESMTHADAQDRIKA   75 (103)
T ss_dssp             CBCTTSTTGGGT-CCTTCBEEEETTEECSSCCHHHHHHHHTT
T ss_pred             EECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            688999999999 99999999999999999999999998874

>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=98.66  E-value=1.9e-08  Score=69.35  Aligned_cols=41  Identities=29%  Similarity=0.551  Sum_probs=38.4

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      .|.|+|||+++|+|++||+|++|||.++.++++.+++.+++
T Consensus        57 ~V~~~spA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~   97 (124)
T 2daz_A           57 GINPEGPAAADGRMRIGDELLEINNQILYGRSHQNASAIIK   97 (124)
T ss_dssp             EECTTSHHHHHTCCCTTCEECEESSCBCTTSCHHHHHHHHH
T ss_pred             EECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            57899999999999999999999999999999999988875

>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6

Probab=98.65  E-value=2.1e-07  Score=64.34  Aligned_cols=44  Identities=25%  Similarity=0.298  Sum_probs=39.2

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHc
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRL   90 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~   90 (175)
                      .+++|..|.+++||+++  |++||+|++|||+.+.+  +.+....++.
T Consensus        25 ~gv~V~~V~~~spA~~a--L~~GD~Il~InG~~v~~--~~dl~~~l~~   68 (125)
T 2hga_A           25 DGVQIDSVVPGSPASKV--LTPGLVIESINGMPTSN--LTTYSAALKT   68 (125)
T ss_dssp             CCEEEEEECSSSGGGGT--SCTTCEEEEETTEECSS--HHHHHHHHTT
T ss_pred             CceEEEEECCCChHHHh--cCCCCEEEEECCEEcCC--HHHHHHHHHh
Confidence            48999999999999998  99999999999999964  6788877874

>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.65  E-value=2.5e-08  Score=68.20  Aligned_cols=42  Identities=31%  Similarity=0.585  Sum_probs=37.9

Q ss_pred             ccCCCChhhhc-CCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATD-GRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~-G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      +|.|+|||+++ |+|+.||+|++|||.++.+++|.+++.+++.
T Consensus        47 ~V~~~spA~~a~gGL~~GD~Il~ing~~v~~~~~~~~~~~~~~   89 (119)
T 2cs5_A           47 RVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKA   89 (119)
T ss_dssp             EECSSSTTTSSSSCCCTTCEEEEETTBCTTSSCHHHHHHHHHH
T ss_pred             EECCCCHHHHhhcCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            57899999999 3499999999999999999999999988763

>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.65  E-value=3.3e-08  Score=65.71  Aligned_cols=40  Identities=25%  Similarity=0.494  Sum_probs=37.3

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      .|.|+|||+++| |+.||+|++|||.++.++++.++..+++
T Consensus        36 ~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~   75 (102)
T 2d90_A           36 DIEPGSPAEAAG-LKNNDLVVAVNGKSVEALDHDGVVEMIR   75 (102)
T ss_dssp             CCCTTSTTTTTT-CCTTCEEEEESSCBCTTSCHHHHHHHHH
T ss_pred             EECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            578999999999 9999999999999999999999888875

>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}

Probab=98.65  E-value=3.6e-08  Score=64.62  Aligned_cols=41  Identities=27%  Similarity=0.559  Sum_probs=38.1

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      .|.++|||+++|+|++||+|++|||.++.++++.++..+++
T Consensus        39 ~v~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~   79 (97)
T 2iwn_A           39 SITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLR   79 (97)
T ss_dssp             EECTTCHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHH
T ss_pred             EeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            47899999999999999999999999999999999888876

>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}

Probab=98.64  E-value=3.3e-08  Score=67.07  Aligned_cols=40  Identities=25%  Similarity=0.508  Sum_probs=37.5

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      .|.|+|||+++| |+.||+|++|||.++.++++.++...++
T Consensus        44 ~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~   83 (114)
T 2edz_A           44 VIEEGSPAEKAG-LLDGDRVLRINGVFVDKEEHAQVVELVR   83 (114)
T ss_dssp             CCCTTCTTGGGT-CCTTCEEEEESSSBCSSSCHHHHHHHHH
T ss_pred             EeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            578999999999 9999999999999999999999988875

>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A

Probab=98.64  E-value=4.2e-08  Score=62.09  Aligned_cols=41  Identities=24%  Similarity=0.494  Sum_probs=38.0

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      .|.|+|+|+++|+|++||+|++|||.++.++++.++..+++
T Consensus        27 ~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~   67 (81)
T 2rcz_A           27 EISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIE   67 (81)
T ss_dssp             EECTTSHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             EECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            57899999999999999999999999999999999988876

>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1 protein; PDZ domain, structural genomics consortium, SGC, hydrolase R; 2.29A {Homo sapiens}

Probab=98.64  E-value=3.1e-08  Score=65.81  Aligned_cols=40  Identities=28%  Similarity=0.368  Sum_probs=35.7

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      .|.|||||+++| |++||+|++|||.++...+.+++...++
T Consensus        45 ~V~~gSpA~~AG-L~~GD~I~~Ing~~v~~~s~~dv~~~i~   84 (101)
T 3qik_A           45 SVQRGSLAEVAG-LQVGRKIYSINEDLVFLRPFSEVESILN   84 (101)
T ss_dssp             EECTTSHHHHHT-CCTTCBEEEETTEESTTSCHHHHHHHHH
T ss_pred             EECCCCHHHHcC-CCCCCEEEEECCEEcCcCCHHHHHHHHH
Confidence            578999999999 9999999999999998777888877764

>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.64  E-value=1.9e-08  Score=67.55  Aligned_cols=41  Identities=27%  Similarity=0.683  Sum_probs=37.8

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      .|.++|||+++|+|+.||+|++|||.++.++++.++..+++
T Consensus        48 ~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~   88 (108)
T 1q7x_A           48 AVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLR   88 (108)
T ss_dssp             EECTTSTHHHHTCCCSSCEEEEETTEECBSCTTSHHHHHHH
T ss_pred             EECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            57899999999999999999999999999999888888775

>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}

Probab=98.63  E-value=4.6e-08  Score=63.56  Aligned_cols=42  Identities=24%  Similarity=0.475  Sum_probs=38.5

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      .|.++|+|+++|+|+.||+|++|||.++.++++.++..+++.
T Consensus        29 ~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~   70 (92)
T 3cyy_A           29 EISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIER   70 (92)
T ss_dssp             EECTTCHHHHSCCCCTTCEEEEETTEECTTCCHHHHHHHHHT
T ss_pred             EECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            578999999999999999999999999999999999888863

>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A

Probab=98.63  E-value=3e-08  Score=68.51  Aligned_cols=40  Identities=30%  Similarity=0.449  Sum_probs=37.1

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      .|.|+|||+++| |++||+|++|||.++.++++.++...+.
T Consensus        57 ~V~~gspA~~aG-L~~GD~Il~Vng~~v~~~~~~~~~~~l~   96 (124)
T 3tsv_A           57 GVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLL   96 (124)
T ss_dssp             EECTTCHHHHTT-CCTTEEEEEETTEECSSCCHHHHHHHHH
T ss_pred             EECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            578999999999 9999999999999999999998888765

>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.63  E-value=3.8e-08  Score=66.77  Aligned_cols=41  Identities=34%  Similarity=0.686  Sum_probs=37.6

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      .|.++|||+++|.|+.||+|++|||.++.+++++++..+++
T Consensus        54 ~V~~~spA~~aGll~~GD~I~~vng~~v~~~~~~~~~~~l~   94 (113)
T 1va8_A           54 RIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLS   94 (113)
T ss_dssp             EECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             EeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            57899999999933999999999999999999999999885

>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.63  E-value=3.8e-08  Score=65.20  Aligned_cols=42  Identities=21%  Similarity=0.418  Sum_probs=38.6

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhCC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG   44 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~g   44 (175)
                      .|.|+|||+++| |++||+|++|||.++.++++.+++..++.+
T Consensus        42 ~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~~~   83 (100)
T 2eeh_A           42 KVEEGSSAERAG-LCVGDKITEVNGLSLESTTMGSAVKVLTSS   83 (100)
T ss_dssp             EECTTSHHHHHT-CCSSCEEEEETTEECSSCCHHHHHHHHHSC
T ss_pred             EECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhhcCC
Confidence            578999999999 999999999999999999999999888753

>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5

Probab=98.63  E-value=8.3e-08  Score=64.24  Aligned_cols=44  Identities=18%  Similarity=0.080  Sum_probs=34.6

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHc
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRL   90 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~   90 (175)
                      |+.|....|+++|+++| |++||+|++|||+.+.++  .+...+++.
T Consensus        38 G~~V~~~~pas~A~~aG-l~~GDvI~~ing~~v~~~--~d~~~~~~~   81 (105)
T 2i4s_A           38 GYRVSPGKDPVLFESIG-LQDGDMAVALNGLDLTDP--NVMNTLFQS   81 (105)
T ss_dssp             EEEEEECSCTHHHHHHT-CCTTCEEEEETTEETTST--THHHHHHHH
T ss_pred             EEEEecCCCCCHHHHcC-CCCCCEEEEECCEECCCH--HHHHHHHHh
Confidence            45566666777779999 999999999999999765  555566664

>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=98.62  E-value=2.8e-08  Score=68.85  Aligned_cols=42  Identities=24%  Similarity=0.592  Sum_probs=39.2

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      .|.|+|||+++|+|+.||+|++|||.++.++++.++..+++.
T Consensus        52 ~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~   93 (129)
T 2dmz_A           52 SVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANHDVVEVLRN   93 (129)
T ss_dssp             EECTTSHHHHHTCCCSSCBEEEETTBCCTTCCHHHHHHHHHH
T ss_pred             EeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            578999999999999999999999999999999999998863

>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1

Probab=98.61  E-value=1.3e-07  Score=75.54  Aligned_cols=65  Identities=22%  Similarity=0.361  Sum_probs=51.2

Q ss_pred             CeeCCCCCHHHHHHH-h--------hCCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          26 GTDVRDKSQEEVATI-M--------KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        26 g~~v~~~~~~~~~~~-l--------~~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      |..+.+++.+.+.++ +        ..|++|..|.++|||+++| |++||+|++|||+.+.+  ..+...+++. +..
T Consensus       230 Gv~~~~l~~~~~~~~~l~~~~~~~~~~gv~V~~V~~~spA~~aG-l~~GDvI~~ing~~v~~--~~~l~~~l~~-~~~  303 (325)
T 1lcy_A          230 GVMMLTLSPSILAELQLREPSFPDVQHGVLIHKVILGSPAHRAG-LRPGDVILAIGEQMVQN--AEDVYEAVRT-QSQ  303 (325)
T ss_dssp             CEEEEECCHHHHHHHTTSCTTSCCCSSCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECCS--HHHHHHHHTT-CSS
T ss_pred             ceEeecCCHHHHHhhCccccccccCCCCeEEEEeCcCChHHHCC-CCCCCEEEEECCEEcCC--HHHHHHHHhC-CCe
Confidence            666666666544443 2        2589999999999999999 99999999999999964  6888888876 344

>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.61  E-value=1.2e-08  Score=68.89  Aligned_cols=42  Identities=24%  Similarity=0.476  Sum_probs=39.4

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      .|.|+|+|+++|+|+.||+|++|||.++.++++.+++.+++.
T Consensus        50 ~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~   91 (111)
T 1uju_A           50 KVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRS   91 (111)
T ss_dssp             EECTTSHHHHHSSCCTTCBCCBBSSCBCTTSCHHHHHHHHSS
T ss_pred             EECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            578999999999999999999999999999999999999874

>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A

Probab=98.60  E-value=6.1e-08  Score=64.50  Aligned_cols=39  Identities=26%  Similarity=0.451  Sum_probs=36.2

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      +|.|+|||++ | |++||+|++|||.++.++++.++...++
T Consensus        49 ~V~~~spA~~-g-L~~GD~I~~vng~~v~~~~~~~~~~~~~   87 (103)
T 1n7t_A           49 RVQPEGPASK-L-LQPGDKIIQANGYSFINIEHGQAVSLLK   87 (103)
T ss_dssp             CBSSSSTTSS-S-CCTTCEEEEETTEECSSCCHHHHHHHHH
T ss_pred             EECCCCchHH-C-CCCCCEEEEECCEECCCCCHHHHHHHhh
Confidence            5889999999 7 9999999999999999999999888875

>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A

Probab=98.60  E-value=5.6e-08  Score=66.12  Aligned_cols=41  Identities=32%  Similarity=0.554  Sum_probs=38.0

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      .|.|+|||+++|+|+.||+|++|||.++.+.++.++..+++
T Consensus        56 ~V~~gspA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~l~   96 (114)
T 2gzv_A           56 QVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQ   96 (114)
T ss_dssp             EECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             EECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            57899999999999999999999999998889999988876

>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens}

Probab=98.60  E-value=2.5e-08  Score=66.55  Aligned_cols=40  Identities=18%  Similarity=0.366  Sum_probs=37.5

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      .|.|+|||+++| |++||+|++|||+++.+++++++.++++
T Consensus        54 ~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~l~   93 (104)
T 2z17_A           54 KIQEDSPAHCAG-LQAGDVLANINGVSTEGFTYKQVVDLIR   93 (104)
T ss_dssp             EECTTSHHHHHT-CCTTCBCCEETTEECTTCCHHHHHHHHH
T ss_pred             EECCCChHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHH
Confidence            578999999999 9999999999999999999999998875

>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.60  E-value=3.4e-08  Score=65.50  Aligned_cols=41  Identities=32%  Similarity=0.568  Sum_probs=37.5

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      .|.++|||+++| |+.||+|++|||.++.++++.+++..++.
T Consensus        41 ~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~~   81 (101)
T 1uez_A           41 LVEPGSLAEKEG-LRVGDQILRVNDKSLARVTHAEAVKALKG   81 (101)
T ss_dssp             EECTTSHHHHHT-CCSSCCEEEETTEECSSCCHHHHHHHSSS
T ss_pred             EECCCCHHHHcC-CCCCCEEEEECCEECCCcCHHHHHHhhcC
Confidence            578999999999 99999999999999999999888887754

>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}

Probab=98.60  E-value=6.4e-08  Score=62.71  Aligned_cols=40  Identities=20%  Similarity=0.249  Sum_probs=35.1

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      .|.|+|||+++| |++||+|++|||.++.+.++.++..+++
T Consensus        34 ~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~   73 (90)
T 2eaq_A           34 SVEAGSPAEFSQ-LQVDDEIIAINNTKFSYNDSKEWEEAMA   73 (90)
T ss_dssp             EECTTSHHHHTT-CCTTCEEEEETTEECCTTCHHHHHHHHH
T ss_pred             EECCCChHHHcC-CCCCCEEEEECCEEccCCCHHHHHHHHH
Confidence            578999999999 9999999999999997777777776664

>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}

Probab=98.60  E-value=5.8e-08  Score=63.75  Aligned_cols=40  Identities=25%  Similarity=0.493  Sum_probs=36.3

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      .|.|+|||+++| |++||+|++|||.++.++++.++...++
T Consensus        40 ~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~   79 (97)
T 2w4f_A           40 RVSEEGPAARAG-VRVGDKLLEVNGVALQGAEHHEAVEALR   79 (97)
T ss_dssp             EECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             EECCCChHHHcC-CCCCCEEEEECCEECCCcCHHHHHHHHh
Confidence            578999999999 9999999999999999999987776664

>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.60  E-value=6.5e-08  Score=65.32  Aligned_cols=41  Identities=37%  Similarity=0.669  Sum_probs=38.2

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      .|.++|||+++|+|++||+|++|||+++.++++.++..+++
T Consensus        45 ~V~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~~~   85 (113)
T 1um7_A           45 FILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALK   85 (113)
T ss_dssp             CBCSSSHHHHTTCCCTTCEEEEESSCBCTTCCHHHHHHHHH
T ss_pred             EECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            57899999999999999999999999999999999888776

>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.60  E-value=2.7e-08  Score=68.77  Aligned_cols=41  Identities=32%  Similarity=0.548  Sum_probs=38.5

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      .|.|+|||+++| |+.||+|++|||.++.++++.++..+++.
T Consensus        67 ~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~  107 (126)
T 2yuy_A           67 QVKEGGPAFEAG-LCTGDRIIKVNGESVIGKTYSQVIALIQN  107 (126)
T ss_dssp             CCCSSSHHHHHT-CCSSCCCCEETTEECSSCCHHHHHHHHHT
T ss_pred             EECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            578999999999 99999999999999999999999999874

>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.59  E-value=4.6e-08  Score=66.27  Aligned_cols=40  Identities=30%  Similarity=0.376  Sum_probs=37.3

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      .|.++++|+++| |+.||+|++|||.++.+++++++.++++
T Consensus        42 ~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~d~~~~i~   81 (111)
T 1vae_A           42 FLDPHCSASLAG-AKEGDYIVSIQGVDCKWLTVSEVMKLLK   81 (111)
T ss_dssp             CCCTTSSHHHHH-CCTTCEEEEETTEECSSCCHHHHHHHHH
T ss_pred             EECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            578999999999 9999999999999999989999988876

>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.59  E-value=2.5e-08  Score=67.92  Aligned_cols=42  Identities=17%  Similarity=0.341  Sum_probs=39.1

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhCC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG   44 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~g   44 (175)
                      .|.|+|||+++| |++||+|++|||.++.++++.++..+++..
T Consensus        50 ~V~~~spA~~aG-L~~GD~Il~Ing~~v~~~~~~~~~~~l~~~   91 (114)
T 2d8i_A           50 SVKETGLASKKG-LKAGDEILEINNRAADALNSSMLKDFLSQP   91 (114)
T ss_dssp             ECCTTSSHHHHT-CCTTCCEEEESSCBGGGCCHHHHHHHHTSS
T ss_pred             EeCCCCHHHHcC-CCCCCEEEEECCEECCCcCHHHHHHHHhCC
Confidence            578999999999 999999999999999999999999988864

>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A

Probab=98.59  E-value=5.7e-08  Score=63.66  Aligned_cols=39  Identities=26%  Similarity=0.451  Sum_probs=35.8

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      +|.|+|||++ | |++||+|++|||.++.++++.+++..++
T Consensus        41 ~V~~~spA~~-g-L~~GD~I~~vng~~v~~~~~~~~~~~~~   79 (95)
T 1mfg_A           41 RVQPEGPASK-L-LQPGDKIIQANGYSFINIEHGQAVSLLK   79 (95)
T ss_dssp             EECTTSTTTT-T-CCTTCEEEEETTEECTTCBHHHHHHHHH
T ss_pred             EECCCCchhh-C-CCCCCEEEEECCEEcCCCCHHHHHHHhh
Confidence            5789999999 7 9999999999999999999988888775

>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.59  E-value=4.9e-08  Score=67.11  Aligned_cols=41  Identities=24%  Similarity=0.399  Sum_probs=38.1

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      .|.|++||+++|+|++||+|++|||+++.+++++++.++++
T Consensus        51 ~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~   91 (122)
T 1v5q_A           51 YIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLR   91 (122)
T ss_dssp             EECTTSHHHHSCCCCTTCCEEEETTEESSSSCHHHHHHHHH
T ss_pred             EECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            57899999999999999999999999999999999988875

>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A

Probab=98.58  E-value=5.4e-08  Score=66.47  Aligned_cols=41  Identities=46%  Similarity=0.699  Sum_probs=37.8

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      .|.|+|||+++|+|+.||+|++|||.++.++++.++...++
T Consensus        44 ~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~   84 (119)
T 1tp5_A           44 FILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALK   84 (119)
T ss_dssp             EECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHH
T ss_pred             EECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            57899999999999999999999999999999988877775

>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.58  E-value=4.8e-08  Score=66.30  Aligned_cols=40  Identities=25%  Similarity=0.521  Sum_probs=37.1

Q ss_pred             ccCCCChhhh-cCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAAT-DGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~-~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      .|.|+|||++ +| |+.||+|++|||.++.+++++++..+++
T Consensus        49 ~V~~~spA~~~ag-L~~GD~I~~ing~~v~~~~~~~~~~~l~   89 (114)
T 1uew_A           49 RIIDGSPADRCAK-LKVGDRILAVNGQSIINMPHADIVKLIK   89 (114)
T ss_dssp             EECTTCTTGGGSS-CCTTCBEEEETTBCTTTSCHHHHHHHHH
T ss_pred             EECCCChHHHhCC-CCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            5789999999 77 9999999999999999999999998885

>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A

Probab=98.57  E-value=6.1e-08  Score=68.24  Aligned_cols=41  Identities=32%  Similarity=0.487  Sum_probs=38.2

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      .|.|+|||+++| |++||+|++|||.++.++++.++..+++.
T Consensus        70 ~V~~~spA~~aG-L~~GD~I~~vng~~v~~~~~~~~~~~l~~  110 (139)
T 2vz5_A           70 RVSEGGPAEIAG-LQIGDKIMQVNGWDMTMVTHDQARKRLTK  110 (139)
T ss_dssp             EECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHCC
T ss_pred             EECCCCHHHHCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHh
Confidence            578999999999 99999999999999999999999998863

>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.56  E-value=7.2e-08  Score=66.72  Aligned_cols=42  Identities=31%  Similarity=0.503  Sum_probs=38.5

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhCC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG   44 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~g   44 (175)
                      .|.++|||+++| |++||+|++|||.++.++++.+++..++.+
T Consensus        52 ~V~~~spA~~aG-L~~GD~I~~vng~~v~~~~~~~~~~~~~~~   93 (128)
T 1uf1_A           52 GVDPGSEAEGSG-LKVGDQILEVNGRSFLNILHDEAVRLLKSS   93 (128)
T ss_dssp             EECTTCHHHHHT-CCTTCEEEEETTEECSSCCHHHHHHHHTTC
T ss_pred             EECCCCHHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHhcC
Confidence            578999999999 999999999999999999998888888754

>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.55  E-value=7.2e-08  Score=63.91  Aligned_cols=41  Identities=27%  Similarity=0.563  Sum_probs=36.0

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      .|.|+|||+++|.|++||+|++|||.++.++ +.+++.+++.
T Consensus        41 ~V~~~spA~~agGL~~GD~I~~ing~~v~~~-~~~~~~~~~~   81 (100)
T 2edp_A           41 KIEDGGKAALSQKMRTGDELVNINGTPLYGS-RQEALILIKG   81 (100)
T ss_dssp             CCCTTSHHHHHTSCCTTCEEEEETTEECCSC-SHHHHHHHHT
T ss_pred             EECCCCHHHHcCCCCCCCEEEEECCEEccch-HHHHHHHHHh
Confidence            5789999999934999999999999999997 7888887763

>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A

Probab=98.55  E-value=2.9e-07  Score=73.32  Aligned_cols=44  Identities=18%  Similarity=0.271  Sum_probs=39.4

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHc
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRL   90 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~   90 (175)
                      +++|..|.+++||+++| |++||+|++|||+.+.+  +.+...++..
T Consensus       243 g~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~--~~~l~~~l~~  286 (324)
T 1y8t_A          243 GAKIVEVVAGGAAANAG-VPKGVVVTKVDDRPINS--ADALVAAVRS  286 (324)
T ss_dssp             SEEEEEECTTSTTTTTT-CCTTCEEEEETTEECCS--HHHHHHHHHT
T ss_pred             ceEEEEECCCChHHHcC-CCCCCEEEEECCEECCC--HHHHHHHHHh
Confidence            78899999999999999 99999999999999965  5777777764

>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.54  E-value=9.6e-08  Score=64.29  Aligned_cols=40  Identities=25%  Similarity=0.493  Sum_probs=36.9

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      .|.|+|||+++| |++||+|++|||.++.++++.++...++
T Consensus        52 ~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~   91 (110)
T 1x5q_A           52 RVSEEGPAARAG-VRVGDKLLEVNGVALQGAEHHEAVEALR   91 (110)
T ss_dssp             EECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             EECCCCHHHHcC-CCCCCEEEEECCEECCCcCHHHHHHHhh
Confidence            578999999999 9999999999999999999988887775

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A

Probab=98.53  E-value=2.6e-08  Score=82.93  Aligned_cols=45  Identities=31%  Similarity=0.483  Sum_probs=39.7

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHc
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRL   90 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~   90 (175)
                      .|++|..|.++|||+++| |++||+|++|||+.+.++  .+...++..
T Consensus       286 ~G~~V~~V~~gspA~~AG-L~~GDvI~~inG~~v~~~--~~l~~~l~~  330 (448)
T 1ky9_A          286 RGAFVSQVLPNSSAAKAG-IKAGDVITSLNGKPISSF--AALRAQVGT  330 (448)
T ss_dssp             CSEECCCCTTCSSSTTTT-CCTTCEECBSSSSBCCSS--HHHHHHTTS
T ss_pred             CceEEEEeccCCHHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHh
Confidence            388999999999999999 999999999999999765  667777764

>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.52  E-value=2.6e-07  Score=60.72  Aligned_cols=39  Identities=31%  Similarity=0.496  Sum_probs=35.5

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      +|.|+|||+ .| |++||+|++|||.++.++++.++..+++
T Consensus        37 ~V~~~spA~-ag-L~~GD~Il~ing~~v~~~~~~~~~~~~~   75 (96)
T 2edv_A           37 AVTAGGSAH-GK-LFPGDQILQMNNEPAEDLSWERAVDILR   75 (96)
T ss_dssp             CBCSSSSST-TT-SCTTCBEEEESSCBSTTCCHHHHHHHHH
T ss_pred             EECCCCchh-hC-CCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            688999994 66 9999999999999999999999988876

>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}

Probab=98.52  E-value=9.5e-08  Score=61.67  Aligned_cols=37  Identities=22%  Similarity=0.418  Sum_probs=32.4

Q ss_pred             CCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         4 ~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      +++|||+ +| |++||+|++|||.++.++++.++..+++
T Consensus        34 v~~spA~-aG-l~~GD~I~~vng~~v~~~~~~~~~~~l~   70 (88)
T 3bpu_A           34 IVDSPRS-RG-LKEGDLIVEVNKKNVQALTHNQVVDMLV   70 (88)
T ss_dssp             CCC--CC-TT-CCTTCEEEEETTEECTTSCHHHHHHHHH
T ss_pred             ecCChhH-hC-CCCCCEEEEECCEEcCCCCHHHHHHHHH
Confidence            4899999 77 9999999999999999999999998876

>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.50  E-value=1e-07  Score=64.84  Aligned_cols=40  Identities=28%  Similarity=0.552  Sum_probs=36.1

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      .|.|+|||+++| |++||+|++|||.++.++++.++...++
T Consensus        48 ~V~~~spA~~aG-L~~GD~Il~vng~~v~~~~~~~~~~~~~   87 (117)
T 1uit_A           48 KVTVGSIAHQAG-LEYGDQLLEFNGINLRSATEQQARLIIG   87 (117)
T ss_dssp             EECTTSHHHHHT-CCTTCEECEETTEETTTCCHHHHHHHTT
T ss_pred             EECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            578999999999 9999999999999999999988776554

>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A

Probab=98.49  E-value=1e-07  Score=64.54  Aligned_cols=40  Identities=35%  Similarity=0.630  Sum_probs=36.4

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      .|.++++|+++| |++||+|++|||.++.++++.++..+++
T Consensus        47 ~V~~~s~A~~aG-L~~GD~Il~vng~~v~~~~~~~~~~~~~   86 (114)
T 1x5n_A           47 HVKPGSLSAEVG-LEIGDQIVEVNGVDFSNLDHKEAVNVLK   86 (114)
T ss_dssp             EECTTSTTTTTT-CCTTCEEEEETTEETTSCCTTHHHHHHH
T ss_pred             EECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHh
Confidence            578999999999 9999999999999999999888877764

>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A 2lsr_A

Probab=98.48  E-value=1.2e-07  Score=70.14  Aligned_cols=42  Identities=29%  Similarity=0.555  Sum_probs=39.3

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhCC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG   44 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~g   44 (175)
                      .|.|||||+++| |+.||+|++|||.++.++++.++..+++.+
T Consensus       116 ~V~~gspA~~aG-L~~GD~Il~vng~~v~~~~~~~~~~~l~~~  157 (192)
T 3k1r_A          116 HLIKGGQADSVG-LQVGDEIVRINGYSISSCTHEEVINLIRTE  157 (192)
T ss_dssp             EECTTSHHHHTT-CCTTEEEEEETTEECTTCCHHHHHHHHTSS
T ss_pred             EECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHcCC
Confidence            578999999999 999999999999999999999999998764

>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens}

Probab=98.47  E-value=1.7e-07  Score=64.66  Aligned_cols=41  Identities=24%  Similarity=0.428  Sum_probs=38.0

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      .|.++|||+++| |+.||+|++|||.++.++++.++..+++.
T Consensus        39 ~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~   79 (128)
T 2kjd_A           39 SVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIRA   79 (128)
T ss_dssp             EECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHT
T ss_pred             EeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            578999999999 99999999999999999999999888864

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}

Probab=98.47  E-value=1.5e-07  Score=73.11  Aligned_cols=42  Identities=29%  Similarity=0.475  Sum_probs=38.3

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      +|.+||||+++++|+.||+|++|||+++.+++|.+++.+++.
T Consensus       109 ~V~~gspA~~~aGL~~GD~Il~VNG~~v~~~t~~e~v~~l~~  150 (263)
T 1z87_A          109 KIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKK  150 (263)
T ss_dssp             ECCTTSHHHHCTTCCSSCEEEEESSCBCTTSCHHHHHHHHHH
T ss_pred             EECCCCHHHHhCCCCCCCEEEEECCEECCCcCHHHHHHHHhc
Confidence            578999999964499999999999999999999999999864

>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B

Probab=98.46  E-value=2e-07  Score=62.81  Aligned_cols=40  Identities=28%  Similarity=0.500  Sum_probs=37.0

Q ss_pred             ccCCCChhhhcCCC-CCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRL-LKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L-~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      .|.++|||+++| | +.||+|++|||.++.+++++++..+++
T Consensus        32 ~v~~~spA~~aG-ll~~GD~I~~ing~~v~~~~~~~~~~~l~   72 (112)
T 1qau_A           32 DLIRGGAAEQSG-LIQAGDIILAVNDRPLVDLSYDSALEVLR   72 (112)
T ss_dssp             EECTTSHHHHHT-CCCTTCEEEEETTEECTTSCHHHHHHHHH
T ss_pred             EeCCCChHHHcC-CCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            578999999999 6 999999999999999999999988885

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=98.46  E-value=3.2e-07  Score=76.58  Aligned_cols=71  Identities=18%  Similarity=0.285  Sum_probs=54.4

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC----------------------------CeEEEEecCC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG----------------------------GILVHDIYPE   53 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~----------------------------gi~V~~v~~g   53 (175)
                      +|.|||||+++| |+.||+|++|||+++.++++++++.+++.                            .+||.....-
T Consensus        29 ~V~~gspA~~aG-L~~GD~Il~VNG~~v~~~t~~e~~~~L~~~~~g~~v~L~V~r~g~~~~~~~~~~~g~s~yVralfdy  107 (468)
T 3shw_A           29 GVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKKDVYRRIVESDVGDSFYIRTHFEY  107 (468)
T ss_dssp             EECSSSHHHHTT-CCTTEEEEEETTEECTTCCHHHHHHHHHHSCTTSEEEEEEEECHHHHHHHHHHTCCCCEEEEECSCB
T ss_pred             EECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEECCccchhhhccccccccccccccCc
Confidence            588999999999 99999999999999999999999988752                            3455444433


Q ss_pred             CcccccC-CcCCCCEEEEECC
Q psy1521          54 GAAAKDA-RLKFGDQILELTG   73 (175)
Q Consensus        54 g~A~~~G-~L~~GD~Il~VNG   73 (175)
                      .+....+ .++.||.|--+|-
T Consensus       108 ~~~~~~~LsF~~GDIL~V~d~  128 (468)
T 3shw_A          108 EKESPYGLSFNKGEVFRVVDT  128 (468)
T ss_dssp             CCSSTTBCCBCTTCEEEEEES
T ss_pred             CCCCCCCceEccCCEEEEeec
Confidence            3333222 1689998887764

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=98.46  E-value=3.3e-07  Score=74.96  Aligned_cols=71  Identities=18%  Similarity=0.285  Sum_probs=54.3

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC----------------------------CeEEEEecCC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG----------------------------GILVHDIYPE   53 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~----------------------------gi~V~~v~~g   53 (175)
                      .|.|||||+++| |++||+|++|||.++.++++++++.+++.                            .+||.....-
T Consensus        37 ~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~e~~~~l~~~~~g~~v~l~v~r~~~~~~~~~~~~~~~~~~vral~dy  115 (391)
T 3tsz_A           37 GVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKKDVYRRIVESDVGDSFYIRTHFEY  115 (391)
T ss_dssp             EECTTCHHHHTT-CCTTEEEEEETTEECTTCCHHHHHHHHHHSCTTSEEEEEEEECHHHHGGGTSSCCSCCEEEEECSCB
T ss_pred             EECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhhcCCCeEEEEEeeCCccccccccccccccccccccccc
Confidence            588999999999 99999999999999999999999988761                            3556544443


Q ss_pred             CcccccC-CcCCCCEEEEECC
Q psy1521          54 GAAAKDA-RLKFGDQILELTG   73 (175)
Q Consensus        54 g~A~~~G-~L~~GD~Il~VNG   73 (175)
                      .+.+..+ .++.||.+--+|-
T Consensus       116 ~~~~~~~Lsf~~Gdil~V~~~  136 (391)
T 3tsz_A          116 EKESPYGLSFNKGEVFRVVDT  136 (391)
T ss_dssp             CCSSTTBCCBCTTCEEEEEES
T ss_pred             CCCCCCcceEccCCEEEEEec
Confidence            3333222 2578998777754

>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}

Probab=98.45  E-value=1.7e-07  Score=75.46  Aligned_cols=73  Identities=32%  Similarity=0.404  Sum_probs=55.9

Q ss_pred             CCeEEEEecCCCcccccCCcCC-----------CCEEEEECCeecCCCCHHHHHHHHHcC--CCCCCCCCCCCCCCCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKF-----------GDQILELTGEDFRNITHAKAMAHLRLT--PAKAKPCPTVPSEPNANA  109 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~-----------GD~Il~VNG~~l~~~~~~~a~~~lk~~--~~~~~~~~~~~~~~~~~~  109 (175)
                      .|++|..|.++|||+++| |++           ||+|++|||+.+.++  ++...+|...  ++.               
T Consensus       251 ~Gv~V~~V~~~spA~~AG-l~~~~~~~~~~l~~GDvI~~ing~~v~~~--~dl~~~l~~~~~g~~---------------  312 (348)
T 3qo6_A          251 SGVLVLDAPPSGPAGKAG-LQSTKRDGYGRLVLGDIITSVNGTKVSNG--SDLYRILDQCKVGDE---------------  312 (348)
T ss_dssp             SSEEEEECCSSSHHHHHT-CCCCEECSSSCEECCCEECEETTBCCSSS--HHHHHHHTTCCTTCE---------------
T ss_pred             ceEEEEEecCCChHHHcC-CccccccccCCCCCCCEEEEECCEEeCCH--HHHHHHHHhCCCcCE---------------
Confidence            389999999999999999 999           999999999999765  7777777543  333               


Q ss_pred             CCCCcccceeeeeeeeeecccCCCCCCCCCceEEEEEEeCCCC
Q psy1521         110 TTGEKTTFYFHFQVKLVVLRDTVTKEDDLLEFVDVELTKKAGK  152 (175)
Q Consensus       110 ~~~~~~~~~~~~~v~l~v~r~~~~~~~~~~~~~~v~l~k~~~~  152 (175)
                                   +.|++.|+...      ..++++|...+..
T Consensus       313 -------------v~l~v~R~g~~------~~~~v~l~~~~~~  336 (348)
T 3qo6_A          313 -------------VTVEVLRGDHK------EKISVTLEPKPDE  336 (348)
T ss_dssp             -------------EEEEEECSSSE------EEEEEECEECC--
T ss_pred             -------------EEEEEEECCEE------EEEEEEEccCCCC
Confidence                         89999987542      3456666554433

>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A

Probab=98.42  E-value=2.7e-07  Score=61.71  Aligned_cols=39  Identities=18%  Similarity=0.344  Sum_probs=34.7

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      .|.|+|||+ +| |++||+|++|||.++.++++.++...++
T Consensus        45 ~V~~~spA~-ag-l~~GD~I~~vng~~v~~~~~~~~~~~~~   83 (107)
T 2h2b_A           45 DVLKGGPAE-GQ-LQENDRVAMVNGVSMDNVEHAFAVQQLR   83 (107)
T ss_dssp             EECTTSTTB-TT-BCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             EECCCCchh-hC-CCCCCEEEEECCEECCCccHHHHHHHhh
Confidence            578999999 77 9999999999999999999988776664

>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens}

Probab=97.78  E-value=3e-08  Score=67.29  Aligned_cols=40  Identities=38%  Similarity=0.647  Sum_probs=36.0

Q ss_pred             ccCCCChhhh-cCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAAT-DGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~-~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      +|.|+|||++ +| |++||+|++|||.++.+.++.++..+++
T Consensus        59 ~V~~~spA~~~aG-L~~GD~Il~ING~~v~~~~~~~~~~~l~   99 (112)
T 2lob_A           59 EIHPGQPADRCGG-LHVGDAILAVNGVNLRDTKHKEAVTILS   99 (112)
Confidence            5789999999 66 9999999999999999988888887775

>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}

Probab=98.41  E-value=2.6e-07  Score=79.41  Aligned_cols=43  Identities=21%  Similarity=0.313  Sum_probs=36.8

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHc
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRL   90 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~   90 (175)
                      +++|..|.++|||+++| |++||+|++|||+.+..   .+...+++.
T Consensus       497 gv~V~~V~~~spA~~AG-L~~GD~I~aInG~~v~~---~~l~~~l~~  539 (597)
T 4fgm_A          497 GLDVLNVYHDESAYHAG-LSAGDKIIAIDHLQATE---QSVKRILER  539 (597)
T ss_dssp             EEEEEEECTTSHHHHHT-CCTTCEEEEETTEECCT---TTHHHHHTT
T ss_pred             eEEEEEeCCCChHHHCC-CCCCCEEEEECCEECCH---HHHHHHHHh
Confidence            78999999999999999 99999999999999942   445555654

>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.40  E-value=1.6e-07  Score=63.95  Aligned_cols=39  Identities=26%  Similarity=0.423  Sum_probs=35.4

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      +|.|+|+|+ .| |++||+|++|||.++.++++.+++.+++
T Consensus        52 ~V~~~spA~-~g-L~~GD~I~~Vng~~v~~~~~~~~~~~l~   90 (117)
T 2csj_A           52 DVLPGGPAD-GL-LQENDRVVMVNGTPMEDVLHSFAVQQLR   90 (117)
T ss_dssp             EECTTSSHH-HH-BCTTCEEEEESSCBCBTCCHHHHHHHHH
T ss_pred             EECCCCccc-cc-CCCCCEEEEECCEECCCcCHHHHHHHHh
Confidence            578999996 66 9999999999999999999999988876

>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.39  E-value=1.7e-07  Score=64.16  Aligned_cols=41  Identities=27%  Similarity=0.369  Sum_probs=37.2

Q ss_pred             ccCC--CChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVP--GGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~--~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      .|.+  ++||+++| |+.||+|++|||.++.+++++++..+++.
T Consensus        50 ~V~~~~~spA~~aG-L~~GD~Il~Vng~~v~~~~~~dl~~~l~~   92 (118)
T 2yub_A           50 EVNRMHISPNNRNA-IHPGDRILEINGTPVRTLRVEEVEDAIKQ   92 (118)
T ss_dssp             ECCTTTSCTTHHHH-CCTTCCEEEESSSBTTTSCHHHHHHHHHC
T ss_pred             EecCCCCChHHHcC-CCCCCEEEEECCEECCCcCHHHHHHHHHh
Confidence            4567  99999999 99999999999999999999999888764

>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A

Probab=98.39  E-value=3.4e-07  Score=67.47  Aligned_cols=40  Identities=25%  Similarity=0.431  Sum_probs=37.0

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      +|.|+|||++ | |+.||+|++|||.++.+++|.+++.+++.
T Consensus        30 ~v~~~spA~~-g-l~~GD~I~~vng~~v~~~~~~~~~~~~~~   69 (195)
T 2qbw_A           30 RVQPEGPASK-L-LQPGDKIIQANGYSFINIEHGQAVSLLKT   69 (195)
T ss_dssp             EECTTSTTTT-T-CCTTCEEEEETTEECTTCCHHHHHHHHHH
T ss_pred             EECCCChHHh-C-CCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            5789999999 8 99999999999999999999999988763

>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}

Probab=98.34  E-value=6.1e-07  Score=60.88  Aligned_cols=35  Identities=26%  Similarity=0.367  Sum_probs=30.9

Q ss_pred             hhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           8 IAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         8 ~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      +|..+| |++||+|++|||.++.+++|.+++++|+.
T Consensus        44 ~~~~aG-L~~GD~Il~VNG~~v~~~~h~evv~~lk~   78 (113)
T 3soe_A           44 SQWCQG-LQKGDIIKEIYHQNVQNLTHLQVVEVLKQ   78 (113)
T ss_dssp             GGGSTT-CCTTCEEEEETTEECTTSCHHHHHHHHHH
T ss_pred             hHHhCC-CCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            355555 99999999999999999999999999984

>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1

Probab=98.33  E-value=2.9e-07  Score=63.49  Aligned_cols=41  Identities=29%  Similarity=0.541  Sum_probs=38.0

Q ss_pred             ccCCCChhhhcCCC-CCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRL-LKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L-~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      .|.++|||+++| | +.||+|++|||.++.++++.++..+++.
T Consensus        39 ~V~~~spA~~aG-ll~~GD~I~~ing~~v~~~~~~~~~~~l~~   80 (127)
T 1b8q_A           39 DLIRGGAAEQSG-LIQAGDIILAVNDRPLVDLSYDSALEVLRG   80 (127)
T ss_dssp             CCSSSSSHHHHS-SCCTTTCCCEETTEECSSSCHHHHHHHHHS
T ss_pred             EeCCCCHHHHcC-CCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            588999999999 6 9999999999999999999999998864

>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.29  E-value=7.5e-07  Score=61.24  Aligned_cols=40  Identities=35%  Similarity=0.733  Sum_probs=35.1

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      .|.++|||+++|+|++||+|++|||.++.+  +.++..+++.
T Consensus        54 ~V~~~spA~~aG~l~~GD~I~~ing~~v~~--~~~~~~~l~~   93 (124)
T 1wh1_A           54 EIDPNSIAAKDGRIREGDRIIQINGIEVQN--REEAVALLTS   93 (124)
T ss_dssp             EECSSSHHHHTCCCCTTCEEEEESSCBCCS--HHHHHHHHTC
T ss_pred             EECCCCHHHHcCCCCCCCEEEEECCEECCC--HHHHHHHHHh
Confidence            578999999999999999999999999985  6777777753

>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A

Probab=98.28  E-value=9.2e-08  Score=76.53  Aligned_cols=48  Identities=17%  Similarity=0.342  Sum_probs=0.0

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .|++|..|.++|||+++| |++||+|++|||+.+.+  +.+...+++. +..
T Consensus       254 ~g~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~--~~~~~~~l~~-~~~  301 (332)
T 3num_A          254 SGAYIIEVIPDTPAEAGG-LKENDVIISINGQSVVS--ANDVSDVIKR-EST  301 (332)
T ss_dssp             ----------------------------------------------------
T ss_pred             CceEEEEeccCCChHHcC-CCCCCEEEEECCEECCC--HHHHHHHHhC-CCe
Confidence            488999999999999999 99999999999999954  5677777765 444

>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.28  E-value=1e-06  Score=57.87  Aligned_cols=38  Identities=32%  Similarity=0.538  Sum_probs=32.6

Q ss_pred             cCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           3 AVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         3 v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      |.+  +|+++| |++||+|++|||.++.+++|.++.++++.
T Consensus        39 v~~--~a~~aG-L~~GD~I~~vng~~v~~~~~~~~~~~l~~   76 (96)
T 1ujv_A           39 ILD--IQGCPG-LCEGDLIVEINQQNVQNLSHTEVVDILKD   76 (96)
T ss_dssp             ESC--GGGSTT-CCSSCEEEEETTEECSSCCHHHHHHHHHH
T ss_pred             Eec--ccccCC-CCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            455  266777 99999999999999999999999998863

>3k50_A Putative S41 protease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}

Probab=98.27  E-value=3.4e-07  Score=75.13  Aligned_cols=42  Identities=19%  Similarity=0.280  Sum_probs=36.6

Q ss_pred             eEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHc
Q psy1521          45 ILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRL   90 (175)
Q Consensus        45 i~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~   90 (175)
                      ++|..|.++|||+++| |++||+|++|||+.+.+..   +..+++.
T Consensus        92 ~~V~~V~~gsPA~~AG-L~~GD~I~~InG~~v~~~~---~~~~l~~  133 (403)
T 3k50_A           92 ALISYVVPGSPAEEAG-LQRGHWIMMMNGDYITKKV---ESELLQG  133 (403)
T ss_dssp             EEEEEECTTSHHHHTT-CCTTCEEEEETTBCBCTTT---GGGGTSC
T ss_pred             EEEEEeCCCChHHHcC-CCCCCEEEEECCEEccchh---HHHHhhC
Confidence            6799999999999999 9999999999999998874   4555555

>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A

Probab=98.24  E-value=5.7e-07  Score=59.07  Aligned_cols=31  Identities=26%  Similarity=0.406  Sum_probs=28.9

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKS   33 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~   33 (175)
                      .|.|+|||+++| |+.||+|++|||..+.++.
T Consensus         8 ~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~   38 (95)
T 3id1_A            8 EIAANSIAAEAQ-IAPGTELKAVDGIETPDWD   38 (95)
T ss_dssp             EECTTSHHHHTT-CCTTCEEEEETTEECSSHH
T ss_pred             eeCCCCHHHHcC-CCCCCEEEEECCEECCCHH
Confidence            578999999999 9999999999999999874

>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}

Probab=98.23  E-value=8e-07  Score=57.93  Aligned_cols=37  Identities=24%  Similarity=0.349  Sum_probs=31.1

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      .|.|+|||++ | |++||+|++|||.++.++  .++..+++
T Consensus         7 ~V~~~spA~~-G-L~~GD~I~~InG~~v~~~--~~l~~~l~   43 (91)
T 2kjp_A            7 SVVENMPAKG-K-IEVGDKIISADGKNYQSA--EKLIDYIS   43 (91)
T ss_dssp             CCCCSSCCSS-C-CCSSCEEEEETTBCCSSH--HHHHHHHS
T ss_pred             EECCCChHHH-c-CCCCCEEEEECCEECCCH--HHHHHHHH
Confidence            6889999999 8 999999999999999875  45555554

>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A

Probab=98.22  E-value=1.3e-06  Score=56.57  Aligned_cols=37  Identities=27%  Similarity=0.440  Sum_probs=31.2

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIM   41 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l   41 (175)
                      .|.++|||+++| |+.||+|++|||..+.++  .++...+
T Consensus        10 ~v~~~spA~~aG-l~~GD~I~~ing~~v~~~--~~~~~~l   46 (91)
T 2zpm_A           10 NVQPNSAASXAG-LQAGDRIVXVDGQPLTQW--VTFVMLV   46 (91)
T ss_dssp             EECTTSHHHHTT-CCTTCEEEEETTEECCCH--HHHHHHH
T ss_pred             EECCCChHHhcC-CCCCCEEEEECCeEcCCH--HHHHHHH
Confidence            578999999999 999999999999999876  4444444

>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}

Probab=98.22  E-value=7.7e-06  Score=69.35  Aligned_cols=35  Identities=31%  Similarity=0.428  Sum_probs=31.8

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNI   79 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~   79 (175)
                      .|++|..|.++|||++ + |++||.|++|||+.+.+.
T Consensus       277 ~Gv~V~~V~~~spA~~-a-l~~GDvI~~idg~~V~~~  311 (539)
T 4fln_A          277 EGVLVRRVEPTSDASK-V-LKEGDVIVSFDDLHVGCE  311 (539)
T ss_dssp             BCEEEEEECTTSGGGG-T-CCTTCEEEEETTEECBSS
T ss_pred             CceeeecccCCChHHh-C-ccCCCEEEEECCEEeCcC
Confidence            4999999999999987 5 999999999999999653

>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens}

Probab=98.12  E-value=1.1e-06  Score=66.21  Aligned_cols=40  Identities=25%  Similarity=0.434  Sum_probs=36.9

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      .|.+||+|+++| |+.||+|++|||..+.++++.++..+++
T Consensus        39 ~V~~gSpA~~aG-L~~GD~Il~VNG~~V~~~s~~dl~~~l~   78 (216)
T 2krg_A           39 SVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIR   78 (216)
T ss_dssp             EECTTSHHHHHT-CCTTCBCCEETTEECTTCCTHHHHHHHH
T ss_pred             EeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            478999999999 9999999999999999888888888776

>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}

Probab=98.11  E-value=2.3e-06  Score=56.00  Aligned_cols=36  Identities=28%  Similarity=0.486  Sum_probs=30.0

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIM   41 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l   41 (175)
                      .|.++|||++ | |+.||+|++|||.++.++  .++..++
T Consensus        11 ~V~~~spA~~-G-L~~GD~Il~InG~~v~~~--~~l~~~l   46 (94)
T 2kl1_A           11 SVLPNMPAAG-R-LEAGDRIAAIDGQPINTS--EQIVSYV   46 (94)
T ss_dssp             CCCTTSTTBT-T-BCTTCEEEEETTBCCCCH--HHHHHHH
T ss_pred             EECCCChHHh-C-CCCCCEEEEECCEECCCH--HHHHHHH
Confidence            6889999998 8 999999999999999875  3444444

>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4

Probab=98.05  E-value=5e-06  Score=55.97  Aligned_cols=38  Identities=26%  Similarity=0.454  Sum_probs=32.2

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      .|.++|||+++| |++||.|++|||.++.++  .++...++
T Consensus        41 ~V~~~spA~~aG-l~~GD~I~~ing~~v~~~--~~~~~~l~   78 (113)
T 2pzd_A           41 KVILGSPAHRAG-LRPGDVILAIGEQMVQNA--EDVYEAVR   78 (113)
T ss_dssp             EEBTTSHHHHHT-CCTTCEEEEETTEECCSH--HHHHHHHH
T ss_pred             EeCCCChHHHcC-CCCCCEEEEECCEECCCH--HHHHHHHh
Confidence            478999999999 999999999999999864  55666554

>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5

Probab=98.02  E-value=1.5e-06  Score=56.03  Aligned_cols=30  Identities=23%  Similarity=0.354  Sum_probs=25.6

Q ss_pred             CCCChhhhcCCCCCCCEEEEECCeeCCCCCH
Q psy1521           4 VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQ   34 (175)
Q Consensus         4 ~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~   34 (175)
                      .|+|+|+++| |++||.|++|||.++.++..
T Consensus        27 ~~~s~A~~aG-l~~GD~I~~ing~~v~~~~d   56 (87)
T 2i6v_A           27 KDPVLFESIG-LQDGDMAVALNGLDLTDPNV   56 (87)
T ss_dssp             SCHHHHHHTT-CCTTCEEEEETTEETTCHHH
T ss_pred             CCCCHHHHCC-CCCCCEEEEECCEECCCHHH
Confidence            4556669999 99999999999999998753

>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A

Probab=98.00  E-value=3e-06  Score=55.99  Aligned_cols=37  Identities=24%  Similarity=0.287  Sum_probs=29.8

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      .|.|+|||++ | |++||+|++|||.++.++.  ++...+.
T Consensus        13 ~V~~~spA~~-G-L~~GD~I~~Ing~~v~~~~--dl~~~l~   49 (100)
T 3i18_A           13 SVKDDVPAAD-V-LHAGDLITEIDGNAFKSSQ--EFIDYIH   49 (100)
T ss_dssp             EECTTSGGGG-T-CCTTCEEEEETTBCCSSHH--HHHHHHH
T ss_pred             EeCCCCchHH-C-CCCCCEEEEECCEECCCHH--HHHHHHH
Confidence            5789999995 7 9999999999999998763  4444443

>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae}

Probab=97.93  E-value=5.5e-06  Score=57.72  Aligned_cols=30  Identities=23%  Similarity=0.186  Sum_probs=27.5

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKS   33 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~   33 (175)
                      .|.++|||+ +| |+.||+|++|||.++.++.
T Consensus        63 ~V~~~spA~-aG-L~~GD~I~~inG~~v~~~~   92 (134)
T 2l97_A           63 SVQSNMPAN-GH-LEKYDVITKVDDKEIASST   92 (134)
T ss_dssp             ECSTTSGGG-TT-SCSSCEEEEETTEECCCHH
T ss_pred             EECCCCchH-HC-CCCCCEEEEECCEEcCCHH
Confidence            578999999 88 9999999999999998864

>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens}

Probab=97.93  E-value=4.7e-06  Score=56.03  Aligned_cols=37  Identities=24%  Similarity=0.475  Sum_probs=31.0

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIM   41 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l   41 (175)
                      .|.++|||+++| |++||+|++|||.++.++  .++...+
T Consensus        41 ~V~~~spA~~aG-l~~GD~I~~ing~~v~~~--~~~~~~l   77 (112)
T 2p3w_A           41 EVAPNSPSQRGG-IQDGDIIVKVNGRPLVDS--SELQEAV   77 (112)
T ss_dssp             EECTTSHHHHHT-CCTTCEEEEETTEECCSH--HHHHHHH
T ss_pred             EECCCChHHHCC-CCCCCEEEEECCEECCCH--HHHHHHH
Confidence            478999999999 999999999999999875  4444444

>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5

Probab=97.91  E-value=6.5e-06  Score=54.84  Aligned_cols=37  Identities=22%  Similarity=0.335  Sum_probs=28.7

Q ss_pred             CCChhhhcCCCCCCCEEEEECCeeCCCCCH-HHHHHHhh
Q psy1521           5 PGGIAATDGRLLKGDQIMSVDGTDVRDKSQ-EEVATIMK   42 (175)
Q Consensus         5 ~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~-~~~~~~l~   42 (175)
                      |+|+|+++| |++||+|++|||.++.++.. .+++..++
T Consensus        46 pas~A~~aG-l~~GDvI~~ing~~v~~~~d~~~~~~~~~   83 (105)
T 2i4s_A           46 DPVLFESIG-LQDGDMAVALNGLDLTDPNVMNTLFQSMN   83 (105)
T ss_dssp             CTHHHHHHT-CCTTCEEEEETTEETTSTTHHHHHHHHHT
T ss_pred             CCCHHHHcC-CCCCCEEEEECCEECCCHHHHHHHHHhcC
Confidence            445569999 99999999999999999975 33444443

>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine protease, serine- lysine catalytic DYAD, PDZ domain, photosynthesis; 1.80A {Scenedesmus obliquus} SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A

Probab=97.84  E-value=1.7e-05  Score=64.68  Aligned_cols=40  Identities=38%  Similarity=0.619  Sum_probs=37.0

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      .|.|+|||+++| |+.||+|++|||+++.+++..++..+++
T Consensus       105 ~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~  144 (388)
T 1fc6_A          105 TPAPGGPAEKAG-ARAGDVIVTVDGTAVKGMSLYDVSDLLQ  144 (388)
T ss_dssp             EECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHC
T ss_pred             EeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHh
Confidence            478999999999 9999999999999999998888888886

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=97.77  E-value=7.7e-05  Score=67.39  Aligned_cols=49  Identities=14%  Similarity=0.121  Sum_probs=41.6

Q ss_pred             CCeEEEEecCC--------CcccccC-CcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPE--------GAAAKDA-RLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~g--------g~A~~~G-~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      ++++|..|.++        |||+++| .|+ ||+|++|||+.+.+..  ++..+|+.....
T Consensus       748 ~~~~v~~v~~~~~~~~~~~spa~~ag~~l~-GD~I~~i~g~~~~~~~--~~~~~~~~~~g~  805 (1045)
T 1k32_A          748 DHYVVAKAYAGDYSNEGEKSPIFEYGIDPT-GYLIEDIDGETVGAGS--NIYRVLSEKAGT  805 (1045)
T ss_dssp             TEEEEEEECBSCTTSTTCBCGGGGGTCCCT-TCEEEEETTEECBTTB--CHHHHHHTTTTS
T ss_pred             CEEEEEEecCCCcccccCCChHHHCCCCcC-CCEEEEECCEEccchh--hHHHhhcCCCCC
Confidence            36789999998        9999999 499 9999999999998875  777888876554

>3k50_A Putative S41 protease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}

Probab=97.56  E-value=3.9e-05  Score=62.89  Aligned_cols=31  Identities=35%  Similarity=0.558  Sum_probs=29.3

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKS   33 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~   33 (175)
                      .|.|||||+++| |+.||+|++|||.++.++.
T Consensus        96 ~V~~gsPA~~AG-L~~GD~I~~InG~~v~~~~  126 (403)
T 3k50_A           96 YVVPGSPAEEAG-LQRGHWIMMMNGDYITKKV  126 (403)
T ss_dssp             EECTTSHHHHTT-CCTTCEEEEETTBCBCTTT
T ss_pred             EeCCCChHHHcC-CCCCCEEEEECCEEccchh
Confidence            588999999999 9999999999999999885

>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6

Probab=97.56  E-value=4.3e-05  Score=52.58  Aligned_cols=36  Identities=25%  Similarity=0.352  Sum_probs=29.7

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIM   41 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l   41 (175)
                      .|.++|||+++  |+.||+|++|||.++.++.  +....+
T Consensus        31 ~V~~~spA~~a--L~~GD~Il~InG~~v~~~~--dl~~~l   66 (125)
T 2hga_A           31 SVVPGSPASKV--LTPGLVIESINGMPTSNLT--TYSAAL   66 (125)
T ss_dssp             EECSSSGGGGT--SCTTCEEEEETTEECSSHH--HHHHHH
T ss_pred             EECCCChHHHh--cCCCCEEEEECCEEcCCHH--HHHHHH
Confidence            47899999988  9999999999999999874  444444

>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A

Probab=97.53  E-value=5.5e-05  Score=59.95  Aligned_cols=38  Identities=29%  Similarity=0.349  Sum_probs=31.9

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      .|.|+|||+++| |+.||+|++|||+++.++  .++..+++
T Consensus       250 ~V~~~spA~~aG-L~~GD~I~~ing~~v~~~--~~l~~~l~  287 (318)
T 1te0_A          250 EVSPDGPAANAG-IQVNDLIISVDNKPAISA--LETMDQVA  287 (318)
T ss_dssp             EECTTSTTTTTC-CCTTCCEEEETTEECCCH--HHHHHHHH
T ss_pred             EeCCCChHHHCC-CCCCCEEEEECCEEcCCH--HHHHHHHH
Confidence            578999999999 999999999999999875  44545443

>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A

Probab=97.46  E-value=5.8e-05  Score=59.92  Aligned_cols=37  Identities=27%  Similarity=0.454  Sum_probs=31.1

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIM   41 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l   41 (175)
                      .|.|+|||+++| |+.||+|++|||+++.++.  +....+
T Consensus       248 ~v~~~spA~~aG-l~~GD~I~~ing~~v~~~~--~l~~~l  284 (324)
T 1y8t_A          248 EVVAGGAAANAG-VPKGVVVTKVDDRPINSAD--ALVAAV  284 (324)
T ss_dssp             EECTTSTTTTTT-CCTTCEEEEETTEECCSHH--HHHHHH
T ss_pred             EECCCChHHHcC-CCCCCEEEEECCEECCCHH--HHHHHH
Confidence            578999999999 9999999999999999763  444443

>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1

Probab=97.46  E-value=8.9e-05  Score=58.96  Aligned_cols=39  Identities=26%  Similarity=0.433  Sum_probs=33.1

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      .|.|+|||+++| |+.||.|++|||..+.++  ++....++.
T Consensus       262 ~V~~~spA~~aG-l~~GDvI~~ing~~v~~~--~~l~~~l~~  300 (325)
T 1lcy_A          262 KVILGSPAHRAG-LRPGDVILAIGEQMVQNA--EDVYEAVRT  300 (325)
T ss_dssp             EECTTSHHHHHT-CCTTCEEEEETTEECCSH--HHHHHHHTT
T ss_pred             EeCcCChHHHCC-CCCCCEEEEECCEEcCCH--HHHHHHHhC
Confidence            578999999999 999999999999999865  556666653

>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}

Probab=97.45  E-value=4.4e-05  Score=61.31  Aligned_cols=37  Identities=27%  Similarity=0.472  Sum_probs=31.1

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIM   41 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l   41 (175)
                      .|.|+|||+++| |++||.|++|||+++.++  .+....+
T Consensus       269 ~V~~~spA~~aG-L~~GDvI~~ing~~v~~~--~~l~~~l  305 (345)
T 3stj_A          269 EVLPGSGSAKAG-VKAGDIITSLNGKPLNSF--AELRSRI  305 (345)
T ss_dssp             EECTTSHHHHHT-CCTTCEECEETTEECSCH--HHHHHHH
T ss_pred             EeccCChHHHcC-CCCCCEEEEECCEECCCH--HHHHHHH
Confidence            578999999999 999999999999999865  3444444

>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A

Probab=97.18  E-value=5.7e-05  Score=60.21  Aligned_cols=31  Identities=29%  Similarity=0.512  Sum_probs=0.0

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKS   33 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~   33 (175)
                      .|.++|||+++| |+.||+|++|||+++.++.
T Consensus       260 ~v~~~spA~~aG-l~~GD~I~~ing~~v~~~~  290 (332)
T 3num_A          260 EVIPDTPAEAGG-LKENDVIISINGQSVVSAN  290 (332)
T ss_dssp             --------------------------------
T ss_pred             EeccCCChHHcC-CCCCCEEEEECCEECCCHH
Confidence            578999999999 9999999999999997653

>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}

Probab=97.15  E-value=0.00018  Score=57.73  Aligned_cols=37  Identities=43%  Similarity=0.628  Sum_probs=31.7

Q ss_pred             ccCCCChhhhcCCCCC-----------CCEEEEECCeeCCCCCHHHHHHHh
Q psy1521           2 RAVPGGIAATDGRLLK-----------GDQIMSVDGTDVRDKSQEEVATIM   41 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~-----------GD~Il~Vng~~v~~~~~~~~~~~l   41 (175)
                      .|.|+|||+++| |+.           ||+|++|||+++.++.  +....+
T Consensus       257 ~V~~~spA~~AG-l~~~~~~~~~~l~~GDvI~~ing~~v~~~~--dl~~~l  304 (348)
T 3qo6_A          257 DAPPSGPAGKAG-LQSTKRDGYGRLVLGDIITSVNGTKVSNGS--DLYRIL  304 (348)
T ss_dssp             ECCSSSHHHHHT-CCCCEECSSSCEECCCEECEETTBCCSSSH--HHHHHH
T ss_pred             EecCCChHHHcC-CccccccccCCCCCCCEEEEECCEEeCCHH--HHHHHH
Confidence            578999999999 999           9999999999999884  444444

>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}

Probab=97.09  E-value=0.00046  Score=59.32  Aligned_cols=28  Identities=25%  Similarity=0.355  Sum_probs=26.4

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVR   30 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~   30 (175)
                      .|.++|||+++| |++||+|++|||..+.
T Consensus       502 ~V~~~spA~~AG-L~~GD~I~aInG~~v~  529 (597)
T 4fgm_A          502 NVYHDESAYHAG-LSAGDKIIAIDHLQAT  529 (597)
T ss_dssp             EECTTSHHHHHT-CCTTCEEEEETTEECC
T ss_pred             EeCCCChHHHCC-CCCCCEEEEECCEECC
Confidence            578999999999 9999999999999994

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=95.46  E-value=0.0097  Score=53.71  Aligned_cols=35  Identities=20%  Similarity=0.195  Sum_probs=29.0

Q ss_pred             CChhhhcCC-CCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           6 GGIAATDGR-LLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         6 ~~~A~~~G~-L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      +|||+++|. |+ ||+|++|||+++.++.  ++..++++
T Consensus       766 ~spa~~ag~~l~-GD~I~~i~g~~~~~~~--~~~~~~~~  801 (1045)
T 1k32_A          766 KSPIFEYGIDPT-GYLIEDIDGETVGAGS--NIYRVLSE  801 (1045)
T ss_dssp             BCGGGGGTCCCT-TCEEEEETTEECBTTB--CHHHHHHT
T ss_pred             CChHHHCCCCcC-CCEEEEECCEEccchh--hHHHhhcC
Confidence            499999994 99 9999999999999886  55566653

>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A

Probab=94.09  E-value=0.069  Score=38.28  Aligned_cols=35  Identities=34%  Similarity=0.737  Sum_probs=27.5

Q ss_pred             CceEEEEEEeCCCCCcCEEEEc---Cc----CCCceEEEeccC
Q psy1521         139 LEFVDVELTKKAGKGFGLSLVG---RK----QGPGVFISDLVS  174 (175)
Q Consensus       139 ~~~~~v~l~k~~~~~lGfsi~g---g~----~~~gi~I~~i~~  174 (175)
                      .+.++|+|.|.. .+|||+|.+   +.    ...|+||..|.|
T Consensus        79 ~~~~~v~l~k~~-~glG~~i~g~~~g~~~~~~~~gi~V~~V~~  120 (170)
T 3egg_C           79 LELFPVELEKDS-EGLGISIIGMGAGADMGLEKLGIFVKTVTE  120 (170)
T ss_dssp             SEEEEEEEECBT-TBSSEEEEEECSSSSCCSSSBEEEEEEECT
T ss_pred             ceEEEEEEEeCC-CeEeEEEEecccCCccccCCCCEEEEEECC
Confidence            357889998655 789999998   32    346899999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	175
d1ueqa_	123	b.36.1.1 (A:) Membrane associated guanylate kinase	1e-10
d1ueqa_	123	b.36.1.1 (A:) Membrane associated guanylate kinase	1e-07
d2fcfa1	96	b.36.1.1 (A:1148-1243) Multiple PDZ domain protein	8e-09
d2fcfa1	96	b.36.1.1 (A:1148-1243) Multiple PDZ domain protein	3e-07
d1ujda_	117	b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human	9e-09
d1ujda_	117	b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human	2e-08
d1wg6a_	127	b.36.1.1 (A:) Partitioning-defective 3-like protei	1e-08
d1wg6a_	127	b.36.1.1 (A:) Partitioning-defective 3-like protei	2e-07
d1x5ra1	99	b.36.1.1 (A:8-106) Glutamate receptor interacting	1e-08
d1x5ra1	99	b.36.1.1 (A:8-106) Glutamate receptor interacting	2e-07
d2cssa1	108	b.36.1.1 (A:8-115) Regulating synaptic membrane ex	1e-08
d2cssa1	108	b.36.1.1 (A:8-115) Regulating synaptic membrane ex	5e-07
d1wi4a1	96	b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mou	3e-08
d1wi4a1	96	b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mou	2e-07
d1wh1a_	124	b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human	4e-08
d1wh1a_	124	b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human	2e-04
d1wf8a1	94	b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens	5e-08
d1wf8a1	94	b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens	1e-06
d1n7ea_	95	b.36.1.1 (A:) Glutamate receptor-interacting prote	6e-08
d1n7ea_	95	b.36.1.1 (A:) Glutamate receptor-interacting prote	9e-08
d1x6da1	107	b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sap	7e-08
d1x6da1	107	b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sap	7e-06
d1um1a_	110	b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human	1e-07
d1um1a_	110	b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human	8e-06
d1uepa_	103	b.36.1.1 (A:) Membrane associated guanylate kinase	1e-07
d1uepa_	103	b.36.1.1 (A:) Membrane associated guanylate kinase	3e-07
d1v6ba_	118	b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxI	1e-07
d1v6ba_	118	b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxI	8e-07
d2csja1	104	b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tj	1e-07
d2csja1	104	b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tj	1e-05
d2csja1	104	b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tj	0.001
d1x45a1	85	b.36.1.1 (A:8-92) Amyloid beta A4 precursor protei	1e-07
d1x45a1	85	b.36.1.1 (A:8-92) Amyloid beta A4 precursor protei	2e-07
d1ufxa_	103	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	1e-07
d1ufxa_	103	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	4e-07
d1t2ma1	92	b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [Ta	2e-07
d1t2ma1	92	b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [Ta	1e-05
d1uhpa_	107	b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human	2e-07
d1uhpa_	107	b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human	1e-04
d2f0aa1	92	b.36.1.1 (A:251-342) Segment polarity protein dish	2e-07
d2f0aa1	92	b.36.1.1 (A:251-342) Segment polarity protein dish	3e-06
d1ihja_	94	b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanoga	2e-07
d1ihja_	94	b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanoga	7e-07
d2fe5a1	92	b.36.1.1 (A:223-314) Synapse-associated protein 10	2e-07
d2fe5a1	92	b.36.1.1 (A:223-314) Synapse-associated protein 10	2e-05
d1rgra_	93	b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus	3e-07
d1rgra_	93	b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus	3e-06
d2fnea1	88	b.36.1.1 (A:1955-2042) Multiple PDZ domain protein	3e-07
d2fnea1	88	b.36.1.1 (A:1955-2042) Multiple PDZ domain protein	2e-06
d1p1da2	99	b.36.1.1 (A:115-213) Glutamate receptor interactin	4e-07
d1p1da2	99	b.36.1.1 (A:115-213) Glutamate receptor interactin	1e-06
d1va8a1	100	b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {M	4e-07
d1va8a1	100	b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {M	7e-06
d1uewa_	114	b.36.1.1 (A:) Membrane associated guanylate kinase	4e-07
d1uewa_	114	b.36.1.1 (A:) Membrane associated guanylate kinase	8e-05
d1v62a_	117	b.36.1.1 (A:) Glutamate receptor interacting prote	5e-07
d1v62a_	117	b.36.1.1 (A:) Glutamate receptor interacting prote	9e-05
d1wifa_	126	b.36.1.1 (A:) hypothetical PDZ domain containing p	5e-07
d1wifa_	126	b.36.1.1 (A:) hypothetical PDZ domain containing p	9e-07
d2h3la1	103	b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens)	6e-07
d2h3la1	103	b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens)	4e-05
d1v5qa_	122	b.36.1.1 (A:) Glutamate receptor interacting prote	7e-07
d1v5qa_	122	b.36.1.1 (A:) Glutamate receptor interacting prote	3e-05
d1ujua_	111	b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sap	8e-07
d1ujua_	111	b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sap	3e-05
d1q3oa_	104	b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norv	8e-07
d1q3oa_	104	b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norv	8e-05
d1i16a_	130	b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens)	9e-07
d1i16a_	130	b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens)	8e-05
d1wfva_	103	b.36.1.1 (A:) Membrane associated guanylate kinase	1e-06
d1wfva_	103	b.36.1.1 (A:) Membrane associated guanylate kinase	2e-05
d1rzxa_	98	b.36.1.1 (A:) GTPase-binding domain of the cell po	1e-06
d1rzxa_	98	b.36.1.1 (A:) GTPase-binding domain of the cell po	4e-06
d1qava_	90	b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [Ta	1e-06
d1qava_	90	b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [Ta	6e-06
d2cs5a1	106	b.36.1.1 (A:8-113) Tyrosine-protein phosphatase no	2e-06
d2cs5a1	106	b.36.1.1 (A:8-113) Tyrosine-protein phosphatase no	1e-05
d1kwaa_	88	b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [Ta	2e-06
d1kwaa_	88	b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [Ta	4e-06
d2f5ya1	77	b.36.1.1 (A:19-95) Regulator of G-protein signalin	2e-06
d2f5ya1	77	b.36.1.1 (A:19-95) Regulator of G-protein signalin	2e-05
d1x5qa1	97	b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Hom	2e-06
d1x5qa1	97	b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Hom	3e-04
d1g9oa_	91	b.36.1.1 (A:) Na+/H+ exchanger regulatory factor,	3e-06
d1g9oa_	91	b.36.1.1 (A:) Na+/H+ exchanger regulatory factor,	3e-05
d1ozia_	99	b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus muscu	4e-06
d1ozia_	99	b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus muscu	2e-05
d1qaua_	112	b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS	5e-06
d1qaua_	112	b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS	1e-04
d1qaua_	112	b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS	6e-04
d1wi2a_	104	b.36.1.1 (A:) PDZ domain containing protein 11, Pd	5e-06
d1wi2a_	104	b.36.1.1 (A:) PDZ domain containing protein 11, Pd	0.001
d1rgwa_	85	b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo	6e-06
d1rgwa_	85	b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo	2e-05
d1ujva_	96	b.36.1.1 (A:) Membrane associated guanylate kinase	6e-06
d1ujva_	96	b.36.1.1 (A:) Membrane associated guanylate kinase	1e-05
d1uita_	117	b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Huma	7e-06
d1uita_	117	b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Huma	0.004
d1m5za_	91	b.36.1.1 (A:) Glutamate receptor interacting prote	1e-05
d1m5za_	91	b.36.1.1 (A:) Glutamate receptor interacting prote	3e-04
d1m5za_	91	b.36.1.1 (A:) Glutamate receptor interacting prote	0.002
d1y7na1	79	b.36.1.1 (A:12-90) Amyloid beta A4 precursor prote	2e-05
d1y7na1	79	b.36.1.1 (A:12-90) Amyloid beta A4 precursor prote	0.002
d1vb7a_	94	b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus	2e-05
d1vb7a_	94	b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus	3e-05
d1x5na1	101	b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens)	3e-05
d1x5na1	101	b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens)	6e-04
d1x5na1	101	b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens)	0.004
d1ueza_	101	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	3e-05
d1ueza_	101	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	0.001
d1v5la_	103	b.36.1.1 (A:) Alpha-actinin-2 associated LIM prote	4e-05
d1v5la_	103	b.36.1.1 (A:) Alpha-actinin-2 associated LIM prote	2e-04
d1uf1a_	128	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	4e-05
d1uf1a_	128	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	4e-04
d1uf1a_	128	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	0.002
d1tp5a1	102	b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat	4e-05
d1tp5a1	102	b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat	1e-04
d1w9ea1	85	b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapie	5e-05
d1w9ea1	85	b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapie	0.001
d1whaa_	105	b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sap	7e-05
d1wf7a_	103	b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus muscu	2e-04
d1wf7a_	103	b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus muscu	3e-04
d1vaea_	111	b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [T	0.004

>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 123

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.2 bits (130), Expect = 1e-10
 Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 9/79 (11%)

Query: 42  KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR---------LTP 92
              + V  + P+G AA+D +++ GD I+ +        THA  +   +         L  
Sbjct: 43  DEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVPIGQSVNLVL 102

Query: 93  AKAKPCPTVPSEPNANATT 111
            +  P P  P +P  +  +
Sbjct: 103 CRGYPLPFDPEDPANSGPS 121

>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 123

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (109), Expect = 1e-07
 Identities = 11/40 (27%), Positives = 21/40 (52%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
          +P G AA DG++  GD I+ ++   V   +  +V  + + 
Sbjct: 52 IPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQS 91

>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (115), Expect = 8e-09
 Identities = 16/48 (33%), Positives = 28/48 (58%)

Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
            GI +  +  +  A K+  LK GD+I+E+ G D R+ +H +A+  +R
Sbjct: 35 MRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIR 82

>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (104), Expect = 3e-07
 Identities = 14/40 (35%), Positives = 22/40 (55%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
          +    A  +G L  GD+I+ VDG D+RD S E+    ++ 
Sbjct: 44 LEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRK 83

>d1ujda_ b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA0559
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (116), Expect = 9e-09
 Identities = 12/48 (25%), Positives = 23/48 (47%)

Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
          + G  +  I P G+A +  +L  G Q+LE  G    + T+ +  + + 
Sbjct: 48 EIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIIS 95

>d1ujda_ b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA0559
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (115), Expect = 2e-08
 Identities = 14/42 (33%), Positives = 26/42 (61%)

Query: 2  RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
          + +PGG A   G+L++G Q++  +G  +  K+ EEV +I+  
Sbjct: 55 KILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQ 96

>d1wg6a_ b.36.1.1 (A:) Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10) {Mouse (Mus musculus) [TaxId: 10090]} Length = 127

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.3 bits (117), Expect = 1e-08
 Identities = 18/61 (29%), Positives = 29/61 (47%)

Query: 41  MKGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKPCPT 100
              GI +  I   GAA KD RL+  DQ++ + GE     ++ +AM  LR + +       
Sbjct: 53  TDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRG 112

Query: 101 V 101
           +
Sbjct: 113 M 113

>d1wg6a_ b.36.1.1 (A:) Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10) {Mouse (Mus musculus) [TaxId: 10090]} Length = 127

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.8 bits (108), Expect = 2e-07
 Identities = 14/39 (35%), Positives = 22/39 (56%)

Query: 4   VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
           + GG A  DGRL   DQ+++V+G  +  KS  E    ++
Sbjct: 63  IHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLR 101

>d1x5ra1 b.36.1.1 (A:8-106) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (115), Expect = 1e-08
 Identities = 15/55 (27%), Positives = 23/55 (41%)

Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK 96
              LV  I P+  A +   L+ GD++L + G    + T  +A   LR      K
Sbjct: 37 SSPPLVCFIEPDSPAERCGLLQVGDRVLSINGIATEDGTMEEANQLLRDAALAHK 91

>d1x5ra1 b.36.1.1 (A:8-106) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (106), Expect = 2e-07
 Identities = 11/43 (25%), Positives = 20/43 (46%)

Query: 2  RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
             P   A   G L  GD+++S++G    D + EE   +++  
Sbjct: 44 FIEPDSPAERCGLLQVGDRVLSINGIATEDGTMEEANQLLRDA 86

>d2cssa1 b.36.1.1 (A:8-115) Regulating synaptic membrane exocytosis protein 1, RIMS1 {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulating synaptic membrane exocytosis protein 1, RIMS1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (115), Expect = 1e-08
 Identities = 9/52 (17%), Positives = 21/52 (40%)

Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPA 93
          + G  +  +     A     L+ GD++LE  G+     T+ +    +  + +
Sbjct: 46 RLGAFITKVKKGSLADVVGHLRAGDEVLEWNGKPLPGATNEEVYNIILESKS 97

>d2cssa1 b.36.1.1 (A:8-115) Regulating synaptic membrane exocytosis protein 1, RIMS1 {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulating synaptic membrane exocytosis protein 1, RIMS1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (104), Expect = 5e-07
 Identities = 11/42 (26%), Positives = 20/42 (47%)

Query: 2  RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
          +   G +A   G L  GD+++  +G  +   + EEV  I+  
Sbjct: 53 KVKKGSLADVVGHLRAGDEVLEWNGKPLPGATNEEVYNIILE 94

>d1wi4a1 b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntaxin binding protein 4
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.9 bits (111), Expect = 3e-08
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 43  GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKPCPTV 101
             + +H++ P G   KD RLK GDQ++ +  E    ++  +A + +    AK +     
Sbjct: 34  PLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIIT--RAKLRSESPW 90

>d1wi4a1 b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntaxin binding protein 4
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.9 bits (106), Expect = 2e-07
 Identities = 15/40 (37%), Positives = 23/40 (57%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
          +PGG    DGRL  GDQ++S++   +   S EE  +I+  
Sbjct: 42 IPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITR 81

>d1wh1a_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (112), Expect = 4e-08
 Identities = 16/44 (36%), Positives = 27/44 (61%)

Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAM 85
            GI + +I P   AAKD R++ GD+I+++ G + +N   A A+
Sbjct: 47 DIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQNREEAVAL 90

>d1wh1a_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (86), Expect = 2e-04
 Identities = 14/40 (35%), Positives = 26/40 (65%), Gaps = 2/40 (5%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
           P  IAA DGR+ +GD+I+ ++G +V+  ++EE   ++  
Sbjct: 56 DPNSIAAKDGRIREGDRIIQINGIEVQ--NREEAVALLTS 93

>d1wf8a1 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neurabin-i
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (110), Expect = 5e-08
 Identities = 19/55 (34%), Positives = 27/55 (49%)

Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK 96
          K GI V  +   GAA +D R++  DQI+E+ G     +T   A   LR T    +
Sbjct: 32 KLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVR 86

>d1wf8a1 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neurabin-i
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (101), Expect = 1e-06
 Identities = 15/42 (35%), Positives = 22/42 (52%)

Query: 2  RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
              GG A  DGR+   DQI+ VDG  +   +Q   AT+++ 
Sbjct: 39 TVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRN 80

>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 95

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor-interacting protein 1, GRIP1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.0 bits (109), Expect = 6e-08
 Identities = 9/48 (18%), Positives = 21/48 (43%)

Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
             I++  +   G A +   +  GD+IL +     +    ++A+  L+
Sbjct: 27 FDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQ 74

>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 95

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor-interacting protein 1, GRIP1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.6 bits (108), Expect = 9e-08
 Identities = 9/40 (22%), Positives = 22/40 (55%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
            GG+A   G +  GD+I++++ + ++ K   E   +++ 
Sbjct: 36 TKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQM 75

>d1x6da1 b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (109), Expect = 7e-08
 Identities = 15/47 (31%), Positives = 29/47 (61%)

Query: 43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
            I VH ++P G A+++  ++ G+++L + G+  +  TH  A+A LR
Sbjct: 35 KVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILR 81

>d1x6da1 b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (95), Expect = 7e-06
 Identities = 10/42 (23%), Positives = 26/42 (61%)

Query: 2  RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
          R  P G+A+ +G + KG++++S++G  ++  +  +   I++ 
Sbjct: 41 RVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQ 82

>d1um1a_ b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1849
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (109), Expect = 1e-07
 Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 5/76 (6%)

Query: 42  KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK-----AK 96
             G+ +  + P   AA D RL  GD+ILE+ G     + + +A+  +R    K     AK
Sbjct: 35  APGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHGGKKMRFLVAK 94

Query: 97  PCPTVPSEPNANATTG 112
                  + ++  ++G
Sbjct: 95  SDVETAKKIHSGPSSG 110

>d1um1a_ b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1849
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (95), Expect = 8e-06
 Identities = 13/40 (32%), Positives = 22/40 (55%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
          +PG  AA DGRL  GD+I+ V+G+ +          +++ 
Sbjct: 44 LPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRH 83

>d1uepa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (108), Expect = 1e-07
 Identities = 15/71 (21%), Positives = 30/71 (42%)

Query: 42  KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKPCPTV 101
              IL+  +   G+A +D RL  GD+++ + G      TH   +  +       +   TV
Sbjct: 33  GQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQVNLTV 92

Query: 102 PSEPNANATTG 112
             +  +  ++G
Sbjct: 93  RRKVLSGPSSG 103

>d1uepa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (105), Expect = 3e-07
 Identities = 15/41 (36%), Positives = 21/41 (51%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
          +  G A  DGRL  GD+++ VDG  V  K+   V  +M   
Sbjct: 42 IAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHA 82

>d1v6ba_ b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxId: 10090]} Length = 118

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.2 bits (109), Expect = 1e-07
 Identities = 13/39 (33%), Positives = 22/39 (56%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
            GG A   G ++KGD+IM+++G  V D +  E    ++
Sbjct: 51 YEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQ 89

>d1v6ba_ b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxId: 10090]} Length = 118

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.8 bits (103), Expect = 8e-07
 Identities = 21/98 (21%), Positives = 36/98 (36%), Gaps = 24/98 (24%)

Query: 44  GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKPCPTVPS 103
            ++V  +Y  GAA +   +  GD+I+ + G+   + T A+A A L+    +         
Sbjct: 44  KVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGD------ 97

Query: 104 EPNANATTGEKTTFYFHFQVKLVVLRDTVTKEDDLLEF 141
                              + LVV      + DD L F
Sbjct: 98  ------------------WIDLVVAVCPPKEYDDELTF 117

>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tight junction protein ZO-2, Tjp2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.7 bits (108), Expect = 1e-07
 Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 26 GTDVRDKSQEEVATIMKGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAM 85
          G  V            +  I++ D+ P G A  D  L+  D+++ + G    ++ H+ A+
Sbjct: 22 GIAVSGGRDNPHFENGETSIVISDVLPGGPA--DGLLQENDRVVMVNGTPMEDVLHSFAV 79

Query: 86 AHLR 89
            LR
Sbjct: 80 QQLR 83

>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tight junction protein ZO-2, Tjp2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.9 bits (93), Expect = 1e-05
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
          +PGG A  DG L + D+++ V+GT + D         ++ 
Sbjct: 47 LPGGPA--DGLLQENDRVVMVNGTPMEDVLHSFAVQQLRK 84

>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tight junction protein ZO-2, Tjp2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.5 bits (79), Expect = 0.001
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 7/46 (15%)

Query: 135 EDDLLEFVDVELTKKAGKGFGLSLVGRKQGP-------GVFISDLV 173
           E+ + E   V L K + +GFG+++ G +  P        + ISD++
Sbjct: 2   EEVIWEQYTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVL 47

>d1x45a1 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (107), Expect = 1e-07
 Identities = 9/49 (18%), Positives = 23/49 (46%)

Query: 41 MKGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
          +   +++ ++   G A K  +L  GDQI+ + G     +  +   + ++
Sbjct: 24 ILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSIIK 72

>d1x45a1 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (105), Expect = 2e-07
 Identities = 16/39 (41%), Positives = 22/39 (56%)

Query: 5  PGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
           GG A   G+L  GDQIMS++GT +         +I+KG
Sbjct: 35 HGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKG 73

>d1ufxa_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (107), Expect = 1e-07
 Identities = 13/47 (27%), Positives = 19/47 (40%)

Query: 43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
              +  I   G+A    +LK G  ILE+ G   R   H +A   + 
Sbjct: 32 PLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIA 78

>d1ufxa_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (104), Expect = 4e-07
 Identities = 14/38 (36%), Positives = 19/38 (50%)

Query: 5  PGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK 42
           GG A   G+L  G  I+ V+G  +R K   E A I+ 
Sbjct: 41 RGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIA 78

>d1t2ma1 b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Afadin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (106), Expect = 2e-07
 Identities = 15/46 (32%), Positives = 22/46 (47%)

Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
          GI V  +   GAA  D RL  GDQ+L + G     ++  +A   + 
Sbjct: 32 GIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMT 77

>d1t2ma1 b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Afadin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (92), Expect = 1e-05
 Identities = 20/40 (50%), Positives = 24/40 (60%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
          V GG A  DGRL  GDQ++SVDG  +   SQE  A +M  
Sbjct: 39 VKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTR 78

>d1uhpa_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (107), Expect = 2e-07
 Identities = 17/49 (34%), Positives = 25/49 (51%)

Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTP 92
          GI V  I   G AAK+  L+  D+I+E+ G D    TH +A+   +   
Sbjct: 42 GIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFKTAK 90

>d1uhpa_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (86), Expect = 1e-04
 Identities = 12/42 (28%), Positives = 21/42 (50%)

Query: 2  RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
          + V  G AA +G L   D+I+ V+G D+   + ++     K 
Sbjct: 47 KIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFKT 88

>d2f0aa1 b.36.1.1 (A:251-342) Segment polarity protein dishevelled homolog Dvl-2 {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Segment polarity protein dishevelled homolog Dvl-2
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 44.9 bits (106), Expect = 2e-07
 Identities = 19/56 (33%), Positives = 30/56 (53%)

Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKP 97
           GGI +  I   GA A D R++ GD +L++   +F N+++  A+  LR    K  P
Sbjct: 28 DGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDIVHKPGP 83

>d2f0aa1 b.36.1.1 (A:251-342) Segment polarity protein dishevelled homolog Dvl-2 {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Segment polarity protein dishevelled homolog Dvl-2
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 41.4 bits (97), Expect = 3e-06
 Identities = 10/40 (25%), Positives = 22/40 (55%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
          + GG  A DGR+  GD ++ V+  +  + S ++   +++ 
Sbjct: 37 MKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRD 76

>d1ihja_ b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Inad
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 44.5 bits (105), Expect = 2e-07
 Identities = 18/46 (39%), Positives = 25/46 (54%)

Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
          GI +  I P+  A    RLK GD+IL L G+D RN T    +  ++
Sbjct: 36 GIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIK 81

>d1ihja_ b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Inad
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 43.3 bits (102), Expect = 7e-07
 Identities = 16/42 (38%), Positives = 26/42 (61%)

Query: 2  RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
            VP   A   GRL  GD+I+S++G DVR+ +++ V  ++K 
Sbjct: 41 GIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKE 82

>d2fe5a1 b.36.1.1 (A:223-314) Synapse-associated protein 102 {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synapse-associated protein 102
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (105), Expect = 2e-07
 Identities = 16/47 (34%), Positives = 28/47 (59%)

Query: 43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
            I +  I   GAA KD RL+ GD++L +   + +++ H +A+A L+
Sbjct: 31 NSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLK 77

>d2fe5a1 b.36.1.1 (A:223-314) Synapse-associated protein 102 {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synapse-associated protein 102
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (92), Expect = 2e-05
 Identities = 15/40 (37%), Positives = 25/40 (62%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
          + GG A  DGRL  GD++++V+ T+++D   EE    +K 
Sbjct: 39 IEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKN 78

>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 93

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.1 bits (104), Expect = 3e-07
 Identities = 19/48 (39%), Positives = 27/48 (56%)

Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
             I +  I P GAAA+D RL+  D IL +   D R +TH+ A+  L+
Sbjct: 30 DPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALK 77

>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 93

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.4 bits (97), Expect = 3e-06
 Identities = 16/42 (38%), Positives = 23/42 (54%)

Query: 2  RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
          + +PGG AA DGRL   D I+ V+  DVR+ +       +K 
Sbjct: 37 KIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKE 78

>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (104), Expect = 3e-07
 Identities = 20/51 (39%), Positives = 32/51 (62%)

Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTP 92
             I V  ++ +GAA++D RLK GDQI+ + G+    +TH +A+A L+ T 
Sbjct: 29 DLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTK 79

>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (98), Expect = 2e-06
 Identities = 16/42 (38%), Positives = 24/42 (57%)

Query: 2  RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
               G A+ DGRL +GDQI++V+G  +   + EE   I+K 
Sbjct: 36 TVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKR 77

>d1p1da2 b.36.1.1 (A:115-213) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.1 bits (104), Expect = 4e-07
 Identities = 9/46 (19%), Positives = 21/46 (45%)

Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
           +++ DI     A +   L+ GD++L +      + +   A+  L+
Sbjct: 39 PLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQ 84

>d1p1da2 b.36.1.1 (A:115-213) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.6 bits (100), Expect = 1e-06
 Identities = 10/42 (23%), Positives = 20/42 (47%)

Query: 2  RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
              G +A   G L  GD+++++D   +   S E+   I++ 
Sbjct: 44 DIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQ 85

>d1va8a1 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Maguk p55 subfamily member 5
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.1 bits (104), Expect = 4e-07
 Identities = 13/48 (27%), Positives = 21/48 (43%)

Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
             +++  I   GAA K   L  GD++LE+ G + R     +    L 
Sbjct: 40 MDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLS 87

>d1va8a1 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Maguk p55 subfamily member 5
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.7 bits (95), Expect = 7e-06
 Identities = 14/42 (33%), Positives = 24/42 (57%)

Query: 2  RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
          R V GG A   G L +GD+++ ++G ++R K   EV  ++  
Sbjct: 47 RIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSD 88

>d1uewa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 114

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (104), Expect = 4e-07
 Identities = 18/84 (21%), Positives = 36/84 (42%), Gaps = 9/84 (10%)

Query: 29  VRDKSQEEVATIMKGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHL 88
           +   ++ E  + +     +  I     A + A+LK GD+IL + G+   N+ HA  +  +
Sbjct: 29  ISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLI 88

Query: 89  R---------LTPAKAKPCPTVPS 103
           +         + P +    P+ PS
Sbjct: 89  KDAGLSVTLRIIPQEELNSPSGPS 112

>d1uewa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 114

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (88), Expect = 8e-05
 Identities = 10/42 (23%), Positives = 22/42 (52%)

Query: 2  RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
          R + G  A    +L  GD+I++V+G  + +    ++  ++K 
Sbjct: 49 RIIDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLIKD 90

>d1v62a_ b.36.1.1 (A:) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (104), Expect = 5e-07
 Identities = 17/77 (22%), Positives = 28/77 (36%), Gaps = 6/77 (7%)

Query: 42  KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK----- 96
           K  I +  I P     +   L  GD IL + G    + +  +A   L     K +     
Sbjct: 41  KSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLASISEKVRLEILP 100

Query: 97  -PCPTVPSEPNANATTG 112
            P    P  P++  ++G
Sbjct: 101 VPQSQRPLRPSSGPSSG 117

>d1v62a_ b.36.1.1 (A:) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (88), Expect = 9e-05
 Identities = 13/42 (30%), Positives = 19/42 (45%)

Query: 2  RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
          R  P  +    G L  GD I+S+DGT +   S  E   ++  
Sbjct: 48 RIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLAS 89

>d1wifa_ b.36.1.1 (A:) hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 126

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.6 bits (105), Expect = 5e-07
 Identities = 12/40 (30%), Positives = 21/40 (52%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
          +  G AA+DG L  GD ++SV   +V   +  E   +++ 
Sbjct: 57 INKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQN 96

>d1wifa_ b.36.1.1 (A:) hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 126

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.9 bits (103), Expect = 9e-07
 Identities = 10/51 (19%), Positives = 22/51 (43%)

Query: 43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPA 93
            + +  +  +GAAA D  L+ GD ++ +   +    T  + +  L+    
Sbjct: 49 PYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITI 99

>d2h3la1 b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Erbin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (103), Expect = 6e-07
 Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 2/48 (4%)

Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
            GI V  + PEG A+K   L+ GD+I++  G  F NI H +A++ L+
Sbjct: 42 DDGIFVTRVQPEGPASK--LLQPGDKIIQANGYSFINIEHGQAVSLLK 87

>d2h3la1 b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Erbin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (90), Expect = 4e-05
 Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 2/40 (5%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
           P G A     L  GD+I+  +G    +    +  +++K 
Sbjct: 51 QPEGPA--SKLLQPGDKIIQANGYSFINIEHGQAVSLLKT 88

>d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 122

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.9 bits (103), Expect = 7e-07
 Identities = 14/73 (19%), Positives = 27/73 (36%), Gaps = 9/73 (12%)

Query: 42  KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK----- 96
               L+  I  +  A +   L+ GD+++ + G    + T  +A   LR +   +K     
Sbjct: 44  SSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEI 103

Query: 97  ----PCPTVPSEP 105
                   +PS  
Sbjct: 104 EFDVAESVIPSSG 116

>d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 122

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.6 bits (92), Expect = 3e-05
 Identities = 10/43 (23%), Positives = 19/43 (44%)

Query: 2  RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
                 A   G L  GD++M+++G    D + EE   +++  
Sbjct: 51 YIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDS 93

>d1ujua_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.5 bits (102), Expect = 8e-07
 Identities = 17/47 (36%), Positives = 28/47 (59%)

Query: 43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
           GI +  + P GAA +D RL+ G ++LE+  +    +TH +A+  LR
Sbjct: 44 EGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLR 90

>d1ujua_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (91), Expect = 3e-05
 Identities = 10/42 (23%), Positives = 20/42 (47%)

Query: 2  RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
          +  P G A  DGRL  G +++ V+   +   +  E   +++ 
Sbjct: 50 KVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRS 91

>d1q3oa_ b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Shank1, PDZ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.5 bits (102), Expect = 8e-07
 Identities = 10/66 (15%), Positives = 24/66 (36%), Gaps = 1/66 (1%)

Query: 24 VDGTDVRDKSQEEVATIMKGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAK 83
                    +            +  +   G A + A L+ GD ++E+ G++   + H +
Sbjct: 24 RGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWR-AGLRMGDFLIEVNGQNVVKVGHRQ 82

Query: 84 AMAHLR 89
           +  +R
Sbjct: 83 VVNMIR 88

>d1q3oa_ b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Shank1, PDZ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.1 bits (88), Expect = 8e-05
 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
            GG+A   G L  GD ++ V+G +V      +V  +++ 
Sbjct: 51 DEGGVAWRAG-LRMGDFLIEVNGQNVVKVGHRQVVNMIRQ 89

>d1i16a_ b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (103), Expect = 9e-07
 Identities = 11/51 (21%), Positives = 26/51 (50%)

Query: 42  KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTP 92
              + ++ I+   A+ +   ++ GD+IL+L G   + +T  +A   ++  P
Sbjct: 56  DKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALP 106

>d1i16a_ b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (89), Expect = 8e-05
 Identities = 10/42 (23%), Positives = 20/42 (47%)

Query: 2   RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
           R   G  +     +  GD+I+ + GT ++  ++ E   I+K 
Sbjct: 63  RIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKA 104

>d1wfva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (101), Expect = 1e-06
 Identities = 19/67 (28%), Positives = 37/67 (55%), Gaps = 5/67 (7%)

Query: 42  KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK-----AK 96
           K  + V  +  +G A ++ R++ GDQI+E+ GE  R++THA+A+  ++    +      +
Sbjct: 35  KMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSGGRRVRLLLKR 94

Query: 97  PCPTVPS 103
              + PS
Sbjct: 95  GTGSGPS 101

>d1wfva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (93), Expect = 2e-05
 Identities = 12/40 (30%), Positives = 20/40 (50%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
             G A  +GR+  GDQI+ ++G   RD +      ++K 
Sbjct: 44 AEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKS 83

>d1rzxa_ b.36.1.1 (A:) GTPase-binding domain of the cell polarity protein par6 (Par-6B) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 98

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: GTPase-binding domain of the cell polarity protein par6 (Par-6B)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 42.6 bits (100), Expect = 1e-06
 Identities = 10/46 (21%), Positives = 19/46 (41%)

Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
          GI +  + P G A     L   D+++E+ G +    T  +    + 
Sbjct: 39 GIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMMV 84

>d1rzxa_ b.36.1.1 (A:) GTPase-binding domain of the cell polarity protein par6 (Par-6B) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 98

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: GTPase-binding domain of the cell polarity protein par6 (Par-6B)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 41.5 bits (97), Expect = 4e-06
 Identities = 14/40 (35%), Positives = 25/40 (62%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
          VPGG+A + G L   D+++ V+G +V  K+ ++V  +M  
Sbjct: 46 VPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMMVA 85

>d1qava_ b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [TaxId: 10090]} Length = 90

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.5 bits (100), Expect = 1e-06
 Identities = 18/48 (37%), Positives = 26/48 (54%)

Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
          K  IL+  I+   AA +   L  GD IL + GED  + TH +A+  L+
Sbjct: 29 KMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALK 76

>d1qava_ b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [TaxId: 10090]} Length = 90

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.6 bits (95), Expect = 6e-06
 Identities = 12/42 (28%), Positives = 19/42 (45%)

Query: 2  RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
          +   G  A     L  GD I+SV+G D+   + +E    +K 
Sbjct: 36 KIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKK 77

>d2cs5a1 b.36.1.1 (A:8-113) Tyrosine-protein phosphatase non-receptor type 4, PTPN4 {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tyrosine-protein phosphatase non-receptor type 4, PTPN4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (100), Expect = 2e-06
 Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 42 KGGILVHDIYPEGAAAK-DARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK 96
          K  ++V  + P   A     RL  GDQ++ + G D    TH + +  ++ +  +  
Sbjct: 33 KMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHS 88

>d2cs5a1 b.36.1.1 (A:8-113) Tyrosine-protein phosphatase non-receptor type 4, PTPN4 {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tyrosine-protein phosphatase non-receptor type 4, PTPN4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (94), Expect = 1e-05
 Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 4  VPGGIAAT-DGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
           PG  A     RL +GDQ++ ++G D+ + + ++V   +K 
Sbjct: 42 APGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKA 82

>d1kwaa_ b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Cask/Lin-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (99), Expect = 2e-06
 Identities = 13/47 (27%), Positives = 18/47 (38%)

Query: 43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
             +V  I   G   +   L  GD+I E+ G    N T  +    LR
Sbjct: 25 NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLR 71

>d1kwaa_ b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Cask/Lin-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (96), Expect = 4e-06
 Identities = 11/42 (26%), Positives = 24/42 (57%)

Query: 2  RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
          R + GG+    G L  GD+I  ++G  V +++ E++  +++ 
Sbjct: 31 RIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLRE 72

>d2f5ya1 b.36.1.1 (A:19-95) Regulator of G-protein signaling 3, RGS3 {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulator of G-protein signaling 3, RGS3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (98), Expect = 2e-06
 Identities = 10/53 (18%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAK 96
           + V  +   G A + A L+  D +L+L      +    +    +R  P++  
Sbjct: 19 PVRVQAVDSGGPAER-AGLQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEII 70

>d2f5ya1 b.36.1.1 (A:19-95) Regulator of G-protein signaling 3, RGS3 {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulator of G-protein signaling 3, RGS3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (90), Expect = 2e-05
 Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 1/40 (2%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
            GG A   G L + D ++ ++   V      E+A  ++ 
Sbjct: 26 DSGGPAERAG-LQQLDTVLQLNERPVEHWKCVELAHEIRS 64

>d1x5qa1 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (98), Expect = 2e-06
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
           GI +  +  EG AA+   ++ GD++LE+ G   +   H +A+  LR
Sbjct: 39 EGIFISRVSEEGPAARA-GVRVGDKLLEVNGVALQGAEHHEAVEALR 84

>d1x5qa1 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (83), Expect = 3e-04
 Identities = 9/40 (22%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
             G AA    +  GD+++ V+G  ++     E    ++G
Sbjct: 47 SEEGPAARA-GVRVGDKLLEVNGVALQGAEHHEAVEALRG 85

>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Na+/H+ exchanger regulatory factor, NHERF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (98), Expect = 3e-06
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
          K G  +  + P   A K A L  GD+++E+ GE+    TH + ++ +R
Sbjct: 26 KLGQYIRLVEPGSPAEK-AGLLAGDRLVEVNGENVEKETHQQVVSRIR 72

>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Na+/H+ exchanger regulatory factor, NHERF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (90), Expect = 3e-05
 Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 1/40 (2%)

Query: 5  PGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
          PG  A   G LL GD+++ V+G +V  ++ ++V + ++  
Sbjct: 36 PGSPAEKAG-LLAGDRLVEVNGENVEKETHQQVVSRIRAA 74

>d1ozia_ b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 10090]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Phosphatase hPTP1e
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.5 bits (97), Expect = 4e-06
 Identities = 20/48 (41%), Positives = 27/48 (56%)

Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
           GGI V  I P+GAA  D R+  GD++L + G      TH +A+  LR
Sbjct: 36 HGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLR 83

>d1ozia_ b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 10090]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Phosphatase hPTP1e
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.2 bits (91), Expect = 2e-05
 Identities = 11/42 (26%), Positives = 25/42 (59%)

Query: 2  RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
            +P G A +DGR+ KGD++++V+G  +   + ++    ++ 
Sbjct: 43 AIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRN 84

>d1qaua_ b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 112

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neuronal nitric oxide synthase, NNOS
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.2 bits (96), Expect = 5e-06
 Identities = 12/51 (23%), Positives = 25/51 (49%)

Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTP 92
          K  +++ D+   GAA +   ++ GD IL +      ++++  A+  LR   
Sbjct: 25 KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIA 75

>d1qaua_ b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 112

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neuronal nitric oxide synthase, NNOS
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.7 bits (87), Expect = 1e-04
 Identities = 11/40 (27%), Positives = 21/40 (52%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
          + GG A   G +  GD I++V+   + D S +    +++G
Sbjct: 34 IRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRG 73

>d1qaua_ b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 112

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neuronal nitric oxide synthase, NNOS
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.4 bits (81), Expect = 6e-04
 Identities = 12/32 (37%), Positives = 16/32 (50%)

Query: 142 VDVELTKKAGKGFGLSLVGRKQGPGVFISDLV 173
           + V L K+   G G  +  R   P V ISDL+
Sbjct: 3   ISVRLFKRKVGGLGFLVKERVSKPPVIISDLI 34

>d1wi2a_ b.36.1.1 (A:) PDZ domain containing protein 11, Pdzk11 {Mouse (Mus musculus) [TaxId: 10090]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ domain containing protein 11, Pdzk11
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.1 bits (96), Expect = 5e-06
 Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
          GI +  + P+  A +   L+ GDQ+L +   DF++I H+KA+  L+
Sbjct: 42 GIFISKVIPDSDAHRA-GLQEGDQVLAVNDVDFQDIEHSKAVEILK 86

>d1wi2a_ b.36.1.1 (A:) PDZ domain containing protein 11, Pdzk11 {Mouse (Mus musculus) [TaxId: 10090]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ domain containing protein 11, Pdzk11
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.6 bits (79), Expect = 0.001
 Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
          +P   A     L +GDQ+++V+  D +D    +   I+K  
Sbjct: 49 IPDSDAH-RAGLQEGDQVLAVNDVDFQDIEHSKAVEILKTA 88

>d1rgwa_ b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Zasp (Cypher, Oracle 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (95), Expect = 6e-06
 Identities = 9/40 (22%), Positives = 19/40 (47%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
          +  G  A   +L +GD ++++DG +    +  E    +K 
Sbjct: 32 ITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKS 71

>d1rgwa_ b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Zasp (Cypher, Oracle 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (92), Expect = 2e-05
 Identities = 11/46 (23%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
           + +  I P G+ A  ++L  GD ++ + G +   +TH +A   ++
Sbjct: 26 PLTISRITP-GSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIK 70

>d1ujva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (95), Expect = 6e-06
 Identities = 9/53 (16%), Positives = 21/53 (39%)

Query: 41 MKGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPA 93
          +        +           L  GD I+E+  ++ +N++H + +  L+  P 
Sbjct: 27 IADSPTGQRVKQILDIQGCPGLCEGDLIVEINQQNVQNLSHTEVVDILKDCPI 79

>d1ujva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (93), Expect = 1e-05
 Identities = 10/41 (24%), Positives = 18/41 (43%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
                     L +GD I+ ++  +V++ S  EV  I+K  
Sbjct: 37 KQILDIQGCPGLCEGDLIVEINQQNVQNLSHTEVVDILKDC 77

>d1uita_ b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Discs large 5 protein KIAA0583
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (96), Expect = 7e-06
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
          KGGI V  +   G+ A  A L++GDQ+LE  G + R+ T  +A   + 
Sbjct: 41 KGGIYVSKVTV-GSIAHQAGLEYGDQLLEFNGINLRSATEQQARLIIG 87

>d1uita_ b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Discs large 5 protein KIAA0583
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.4 bits (76), Expect = 0.004
 Identities = 9/37 (24%), Positives = 19/37 (51%)

Query: 7  GIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
          G  A    L  GDQ++  +G ++R  ++++   I+  
Sbjct: 52 GSIAHQAGLEYGDQLLEFNGINLRSATEQQARLIIGQ 88

>d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 91

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.9 bits (93), Expect = 1e-05
 Identities = 10/50 (20%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 40 IMKGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
          +++ G+ V +I P G       LK  D++L++     R+      +  + 
Sbjct: 29 LLEKGVYVKNIRPAGPGDL-GGLKPYDRLLQVNHVRTRDFDCCLVVPLIA 77

>d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 91

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.7 bits (82), Expect = 3e-04
 Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 1/40 (2%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
           P G     G L   D+++ V+    RD     V  ++  
Sbjct: 40 RPAGPGD-LGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAE 78

>d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 91

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 33.8 bits (77), Expect = 0.002
 Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 139 LEFVDVELTKKAG-KGFGLSLVGRKQGPGVFISDLV 173
           +E   V L K +G + FG S+       GV++ ++ 
Sbjct: 5   VELHKVTLYKDSGMEDFGFSVADGLLEKGVYVKNIR 40

>d1y7na1 b.36.1.1 (A:12-90) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (92), Expect = 2e-05
 Identities = 12/60 (20%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 30 RDKSQEEVATIMKGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
          R   + ++   ++ GI +  +   G A +   ++ G +I+E+ G+      H K +  L 
Sbjct: 8  RPDLRYQLGFSVQNGI-ICSLMRGGIAER-GGVRVGHRIIEINGQSVVATPHEKIVHILS 65

>d1y7na1 b.36.1.1 (A:12-90) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.2 bits (76), Expect = 0.002
 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
          + GGIA   G +  G +I+ ++G  V     E++  I+  
Sbjct: 28 MRGGIAE-RGGVRVGHRIIEINGQSVVATPHEKIVHILSN 66

>d1vb7a_ b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ-LIM protein mystique
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.5 bits (92), Expect = 2e-05
 Identities = 7/37 (18%), Positives = 15/37 (40%)

Query: 7  GIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
             A    L  GD I++++G    +    E  + ++ 
Sbjct: 40 RGKAEAADLRPGDIIVAINGQSAENMLHAEAQSKIRQ 76

>d1vb7a_ b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ-LIM protein mystique
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.1 bits (91), Expect = 3e-05
 Identities = 13/47 (27%), Positives = 24/47 (51%)

Query: 43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
             ++     E   A+ A L+ GD I+ + G+   N+ HA+A + +R
Sbjct: 29 HTPIIVTKVTERGKAEAADLRPGDIIVAINGQSAENMLHAEAQSKIR 75

>d1x5na1 b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (91), Expect = 3e-05
 Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 41 MKGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
           K GI +  + P   +A+   L+ GDQI+E+ G DF N+ H +A+  L+
Sbjct: 32 QKPGIFISHVKPGSLSAE-VGLEIGDQIVEVNGVDFSNLDHKEAVNVLK 79

>d1x5na1 b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (81), Expect = 6e-04
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
           PG ++A +  L  GDQI+ V+G D  +   +E   ++K  
Sbjct: 42 KPGSLSA-EVGLEIGDQIVEVNGVDFSNLDHKEAVNVLKSS 81

>d1x5na1 b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.9 bits (75), Expect = 0.004
 Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)

Query: 144 VELTKKAGKGFGLSLV-GRKQGPGVFISDLV 173
           V ++    +G G S+  G  Q PG+FIS + 
Sbjct: 12  VFISLVGSRGLGCSISSGPIQKPGIFISHVK 42

>d1ueza_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (90), Expect = 3e-05
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
          GI V  + P   A K   L+ GDQIL +  +    +THA+A+  L+
Sbjct: 36 GIYVSLVEPGSLAEK-EGLRVGDQILRVNDKSLARVTHAEAVKALK 80

>d1ueza_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (80), Expect = 0.001
 Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 2  RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
             PG +A  +G    GDQI+ V+   +   +  E    +KG 
Sbjct: 41 LVEPGSLAEKEGLR-VGDQILRVNDKSLARVTHAEAVKALKGS 82

>d1v5la_ b.36.1.1 (A:) Alpha-actinin-2 associated LIM protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Alpha-actinin-2 associated LIM protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.5 bits (89), Expect = 4e-05
 Identities = 15/47 (31%), Positives = 21/47 (44%)

Query: 43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
             LV      G+ A  A L  GD IL + G    ++THA A   ++
Sbjct: 28 NQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIK 74

>d1v5la_ b.36.1.1 (A:) Alpha-actinin-2 associated LIM protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Alpha-actinin-2 associated LIM protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.6 bits (84), Expect = 2e-04
 Identities = 9/37 (24%), Positives = 15/37 (40%)

Query: 7  GIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
          G  A    L  GD I+++DG      +  +    +K 
Sbjct: 39 GSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKA 75

>d1uf1a_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (91), Expect = 4e-05
 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
          GI +  + P   A   + LK GDQILE+ G  F NI H +A+  L+
Sbjct: 47 GIYITGVDPGSEAEG-SGLKVGDQILEVNGRSFLNILHDEAVRLLK 91

>d1uf1a_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (83), Expect = 4e-04
 Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 1/41 (2%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG 44
           PG   A    L  GDQI+ V+G    +   +E   ++K  
Sbjct: 54 DPGS-EAEGSGLKVGDQILEVNGRSFLNILHDEAVRLLKSS 93

>d1uf1a_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.2 bits (78), Expect = 0.002
 Identities = 9/31 (29%), Positives = 17/31 (54%), Gaps = 1/31 (3%)

Query: 144 VELTKKAGKGFGLSLV-GRKQGPGVFISDLV 173
           V L    G+  GL++  G + G G++I+ + 
Sbjct: 24  VNLVLGDGRSLGLTIRGGAEYGLGIYITGVD 54

>d1tp5a1 b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 102

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.7 bits (90), Expect = 4e-05
 Identities = 18/48 (37%), Positives = 24/48 (50%)

Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
            GI +  I   G A     L+ GDQIL + G D RN +H +A   L+
Sbjct: 32 GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALK 79

>d1tp5a1 b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 102

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.2 bits (86), Expect = 1e-04
 Identities = 19/42 (45%), Positives = 26/42 (61%)

Query: 2  RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
            + GG A   G L KGDQI+SV+G D+R+ S E+ A  +K 
Sbjct: 39 FILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKN 80

>d1w9ea1 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (88), Expect = 5e-05
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTP 92
            GI V  +     A+    L+FGDQ+L++ GE+    +  KA   L+   
Sbjct: 24 DNGIFVQLVQANSPASL-VGLRFGDQVLQINGENCAGWSSDKAHKVLKQAF 73

>d1w9ea1 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.1 bits (78), Expect = 0.001
 Identities = 9/40 (22%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 4  VPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
               A+  G L  GDQ++ ++G +    S ++   ++K 
Sbjct: 33 QANSPASLVG-LRFGDQVLQINGENCAGWSSDKAHKVLKQ 71

>d1whaa_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (88), Expect = 7e-05
 Identities = 12/42 (28%), Positives = 22/42 (52%)

Query: 2  RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
          R   GG A   G L  GD+++S++G DV +   +   +++  
Sbjct: 44 RIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTA 85

>d1wf7a_ b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 10090]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Enigma homolog ENH
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.5 bits (84), Expect = 2e-04
 Identities = 9/37 (24%), Positives = 17/37 (45%)

Query: 7  GIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
          G  A+   +  GD ++S+DG   +  +  E    +K 
Sbjct: 39 GGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKA 75

>d1wf7a_ b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 10090]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Enigma homolog ENH
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.2 bits (83), Expect = 3e-04
 Identities = 11/47 (23%), Positives = 21/47 (44%)

Query: 43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLR 89
             L      +G  A  A ++ GD +L + G   + +TH +A   ++
Sbjct: 28 NMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIK 74

>d1vaea_ b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 111

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Rhophilin-2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 33.4 bits (76), Expect = 0.004
 Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 2  RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG 43
             P   A+      +GD I+S+ G D +  +  EV  ++K 
Sbjct: 42 FLDPHCSAS-LAGAKEGDYIVSIQGVDCKWLTVSEVMKLLKS 82

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	175
d2fe5a1	92	Synapse-associated protein 102 {Human (Homo sapien	99.66
d1wf8a1	94	Neurabin-i {Human (Homo sapiens) [TaxId: 9606]}	99.65
d2fcfa1	96	Multiple PDZ domain protein {Human (Homo sapiens)	99.65
d1t2ma1	92	Afadin {Human (Homo sapiens) [TaxId: 9606]}	99.65
d1uhpa_	107	Hypothetical protein KIAA1095 {Human (Homo sapiens	99.64
d1rgra_	93	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	99.64
d1ozia_	99	Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 1	99.64
d1ihja_	94	Inad {Fruit fly (Drosophila melanogaster) [TaxId:	99.62
d1p1da2	99	Glutamate receptor interacting protein {Rat (Rattu	99.61
d1whaa_	105	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.6
d1um1a_	110	Hypothetical protein KIAA1849 {Human (Homo sapiens	99.6
d2f0aa1	92	Segment polarity protein dishevelled homolog Dvl-2	99.58
d1ujua_	111	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.58
d1rgwa_	85	Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [Tax	99.57
d1qava_	90	Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}	99.57
d1n7ea_	95	Glutamate receptor-interacting protein 1, GRIP1 {R	99.57
d1x5qa1	97	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.57
d1rzxa_	98	GTPase-binding domain of the cell polarity protein	99.56
d1m5za_	91	Glutamate receptor interacting protein {Rat (Rattu	99.56
d1ujda_	117	Hypothetical protein KIAA0559 {Human (Homo sapiens	99.56
d1x45a1	85	Amyloid beta A4 precursor protein-binding family A	99.56
d1uewa_	114	Membrane associated guanylate kinase inverted-2 (M	99.55
d2fnea1	88	Multiple PDZ domain protein {Human (Homo sapiens)	99.55
d1i16a_	130	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	99.54
d1fc6a3	92	Photosystem II D1 C-terminal processing protease {	99.54
d1g9oa_	91	Na+/H+ exchanger regulatory factor, NHERF {Human (	99.54
d2f5ya1	77	Regulator of G-protein signaling 3, RGS3 {Human (H	99.54
d2cssa1	108	Regulating synaptic membrane exocytosis protein 1,	99.54
d2h3la1	103	Erbin {Human (Homo sapiens) [TaxId: 9606]}	99.53
d1tp5a1	102	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	99.53
d1vb7a_	94	PDZ-LIM protein mystique {Mouse (Mus musculus) [Ta	99.52
d1uepa_	103	Membrane associated guanylate kinase inverted-2 (M	99.52
d1q3oa_	104	Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId	99.52
d1kwaa_	88	Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}	99.52
d1wi4a1	96	Syntaxin binding protein 4 {Mouse (Mus musculus) [	99.52
d1qaua_	112	Neuronal nitric oxide synthase, NNOS {Rat (Rattus	99.51
d1x6da1	107	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	99.5
d1ueqa_	123	Membrane associated guanylate kinase inverted-2 (M	99.5
d1r6ja_	82	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.5
d1v62a_	117	Glutamate receptor interacting protein 2, GRIP2 (K	99.5
d1wi2a_	104	PDZ domain containing protein 11, Pdzk11 {Mouse (M	99.5
d1va8a1	100	Maguk p55 subfamily member 5 {Mouse (Mus musculus)	99.48
d1wg6a_	127	Partitioning-defective 3-like protein, PAR3-L (RIK	99.48
d1w9ea1	85	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.48
d1y7na1	79	Amyloid beta A4 precursor protein-binding family A	99.47
d1wfva_	103	Membrane associated guanylate kinase inverted-2 (M	99.47
d1uita_	117	Discs large 5 protein KIAA0583 {Human (Homo sapien	99.46
d1v6ba_	118	Harmonin {Mouse (Mus musculus) [TaxId: 10090]}	99.46
d1v5qa_	122	Glutamate receptor interacting protein {Mouse (Mus	99.46
d1wf7a_	103	Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 1	99.45
d1x5ra1	99	Glutamate receptor interacting protein 2, GRIP2 (K	99.45
d1v5la_	103	Alpha-actinin-2 associated LIM protein {Mouse (Mus	99.44
d1vaea_	111	Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}	99.44
d2cs5a1	106	Tyrosine-protein phosphatase non-receptor type 4,	99.43
d1x5na1	101	Harmonin {Human (Homo sapiens) [TaxId: 9606]}	99.42
d1wifa_	126	hypothetical PDZ domain containing protein Uqcrc2	99.42
d2csja1	104	Tight junction protein ZO-2, Tjp2 {Mouse (Mus musc	99.42
d1uf1a_	128	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	99.42
d1ueza_	101	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	99.39
d1ufxa_	103	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	99.36
d1wh1a_	124	Hypothetical protein KIAA1095 {Human (Homo sapiens	99.28
d2f0aa1	92	Segment polarity protein dishevelled homolog Dvl-2	99.24
d2z9ia1	88	Protease PepD {Mycobacterium tuberculosis [TaxId:	99.22
d2fcfa1	96	Multiple PDZ domain protein {Human (Homo sapiens)	99.21
d1t2ma1	92	Afadin {Human (Homo sapiens) [TaxId: 9606]}	99.21
d1x45a1	85	Amyloid beta A4 precursor protein-binding family A	99.2
d2fe5a1	92	Synapse-associated protein 102 {Human (Homo sapien	99.2
d1uhpa_	107	Hypothetical protein KIAA1095 {Human (Homo sapiens	99.19
d1ozia_	99	Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 1	99.18
d1uepa_	103	Membrane associated guanylate kinase inverted-2 (M	99.17
d1ky9b2	88	Protease Do (DegP, HtrA), C-terminal domains {Esch	99.17
d1rgra_	93	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	99.17
d1wf8a1	94	Neurabin-i {Human (Homo sapiens) [TaxId: 9606]}	99.17
d1ihja_	94	Inad {Fruit fly (Drosophila melanogaster) [TaxId:	99.16
d1y7na1	79	Amyloid beta A4 precursor protein-binding family A	99.15
d1r6ja_	82	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.15
d1um1a_	110	Hypothetical protein KIAA1849 {Human (Homo sapiens	99.13
d1wi4a1	96	Syntaxin binding protein 4 {Mouse (Mus musculus) [	99.13
d2fnea1	88	Multiple PDZ domain protein {Human (Homo sapiens)	99.12
d1ujua_	111	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.12
d1qava_	90	Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}	99.12
d1whaa_	105	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.12
d1rzxa_	98	GTPase-binding domain of the cell polarity protein	99.12
d1p1da2	99	Glutamate receptor interacting protein {Rat (Rattu	99.12
d1lcya1	100	Mitochondrial serine protease HtrA2 {Human (Homo s	99.12
d1qaua_	112	Neuronal nitric oxide synthase, NNOS {Rat (Rattus	99.12
d1sota1	99	Stress sensor protease DegS, C-terminal domain {Es	99.11
d1kwaa_	88	Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}	99.11
d1n7ea_	95	Glutamate receptor-interacting protein 1, GRIP1 {R	99.1
d2cssa1	108	Regulating synaptic membrane exocytosis protein 1,	99.1
d1ujva_	96	Membrane associated guanylate kinase inverted-2 (M	99.1
d1ufxa_	103	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	99.09
d2f5ya1	77	Regulator of G-protein signaling 3, RGS3 {Human (H	99.09
d1wi2a_	104	PDZ domain containing protein 11, Pdzk11 {Mouse (M	99.09
d1q3oa_	104	Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId	99.09
d1g9oa_	91	Na+/H+ exchanger regulatory factor, NHERF {Human (	99.08
d1x6da1	107	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	99.07
d1ujda_	117	Hypothetical protein KIAA0559 {Human (Homo sapiens	99.07
d1uewa_	114	Membrane associated guanylate kinase inverted-2 (M	99.07
d1x5ra1	99	Glutamate receptor interacting protein 2, GRIP2 (K	99.06
d1vaea_	111	Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}	99.06
d1wg6a_	127	Partitioning-defective 3-like protein, PAR3-L (RIK	99.06
d1rgwa_	85	Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [Tax	99.06
d1v6ba_	118	Harmonin {Mouse (Mus musculus) [TaxId: 10090]}	99.06
d1ueqa_	123	Membrane associated guanylate kinase inverted-2 (M	99.05
d1va8a1	100	Maguk p55 subfamily member 5 {Mouse (Mus musculus)	99.04
d1vb7a_	94	PDZ-LIM protein mystique {Mouse (Mus musculus) [Ta	99.04
d1wifa_	126	hypothetical PDZ domain containing protein Uqcrc2	99.04
d1tp5a1	102	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	99.03
d1v62a_	117	Glutamate receptor interacting protein 2, GRIP2 (K	99.03
d1v5qa_	122	Glutamate receptor interacting protein {Mouse (Mus	99.03
d1i16a_	130	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	99.03
d1x5qa1	97	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.02
d1wfva_	103	Membrane associated guanylate kinase inverted-2 (M	99.02
d1k32a1	91	Tricorn protease {Archaeon Thermoplasma acidophilu	99.02
d1w9ea1	85	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.01
d2cs5a1	106	Tyrosine-protein phosphatase non-receptor type 4,	99.01
d1uf1a_	128	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	98.99
d1fc6a3	92	Photosystem II D1 C-terminal processing protease {	98.99
d1m5za_	91	Glutamate receptor interacting protein {Rat (Rattu	98.98
d1x5na1	101	Harmonin {Human (Homo sapiens) [TaxId: 9606]}	98.96
d2hgaa1	103	Uncharacterized protein MTH1368 {Methanobacterium	98.95
d1ueza_	101	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	98.93
d1wf7a_	103	Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 1	98.9
d1ky9a1	94	Protease Do (DegP, HtrA), C-terminal domains {Esch	98.9
d1v5la_	103	Alpha-actinin-2 associated LIM protein {Mouse (Mus	98.9
d1uita_	117	Discs large 5 protein KIAA0583 {Human (Homo sapien	98.88
d2h3la1	103	Erbin {Human (Homo sapiens) [TaxId: 9606]}	98.86
d2i6va1	87	General secretion pathway protein C, EpsC {Vibrio	98.77
d2csja1	104	Tight junction protein ZO-2, Tjp2 {Mouse (Mus musc	98.74
d1ujva_	96	Membrane associated guanylate kinase inverted-2 (M	98.71
d1wh1a_	124	Hypothetical protein KIAA1095 {Human (Homo sapiens	98.64
d1ky9b2	88	Protease Do (DegP, HtrA), C-terminal domains {Esch	98.46
d2z9ia1	88	Protease PepD {Mycobacterium tuberculosis [TaxId:	98.38
d1k32a1	91	Tricorn protease {Archaeon Thermoplasma acidophilu	98.21
d1lcya1	100	Mitochondrial serine protease HtrA2 {Human (Homo s	98.21
d1ky9a1	94	Protease Do (DegP, HtrA), C-terminal domains {Esch	98.13
d1sota1	99	Stress sensor protease DegS, C-terminal domain {Es	98.09
d2hgaa1	103	Uncharacterized protein MTH1368 {Methanobacterium	97.95
d2i6va1	87	General secretion pathway protein C, EpsC {Vibrio	97.81

>d2fe5a1 b.36.1.1 (A:223-314) Synapse-associated protein 102 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synapse-associated protein 102
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.1e-16  Score=104.34  Aligned_cols=52  Identities=33%  Similarity=0.592  Sum_probs=50.0

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .++||++|.++|||+++|+|++||+|++|||+++.+++|++++++||++++.
T Consensus        31 ~gi~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~e~~~~lk~~~~~   82 (92)
T d2fe5a1          31 NSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDM   82 (92)
T ss_dssp             CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHTCCSE
T ss_pred             CCEEEEEECCCCChhhcCCCCCCCEEEEeCCeecCCCCHHHHHHHHHcCCCE
Confidence            4899999999999999999999999999999999999999999999998777

>d1wf8a1 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neurabin-i
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=7.7e-17  Score=105.42  Aligned_cols=51  Identities=35%  Similarity=0.530  Sum_probs=49.6

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      ++||++|.++|||+++|+|++||+|++|||+++.+++|++|+++|++++..
T Consensus        34 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~   84 (94)
T d1wf8a1          34 GIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGN   84 (94)
T ss_dssp             EEEEEEECTTCHHHHHCSSCTTCBEEEETTEECBSCCHHHHHHHHHHCCSE
T ss_pred             CEEEEEECCCChHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence            789999999999999999999999999999999999999999999998877

>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.7e-16  Score=104.09  Aligned_cols=53  Identities=30%  Similarity=0.563  Sum_probs=49.0

Q ss_pred             hCCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          42 KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        42 ~~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      ..++||++|.++|||+++|+|++||+|++|||+++.+++|++|+++||++++.
T Consensus        35 ~~gi~V~~v~~~s~A~~~G~L~~GD~Il~VNg~~v~~~t~~ea~~~lk~~~~~   87 (96)
T d2fcfa1          35 MRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNP   87 (96)
T ss_dssp             ---EEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSS
T ss_pred             CCCEEEEEECCCCHHHHcCCCcCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence            34899999999999999999999999999999999999999999999998887

>d1t2ma1 b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Afadin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.2e-16  Score=104.12  Aligned_cols=51  Identities=31%  Similarity=0.509  Sum_probs=49.5

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      ++||++|.++|||+++|+|++||+|++|||+++.+++|++|+++|++++..
T Consensus        32 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~ea~~~l~~~~~~   82 (92)
T d1t2ma1          32 GIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTSSV   82 (92)
T ss_dssp             EEEEEEECTTSHHHHHTCCCSSEEEEEETTEECTTCCHHHHHHHHHSCCSE
T ss_pred             CEEEEEEcCCChHHhcCCCCcccEeeeeCCeecCCCCHHHHHHHHHcCCCe
Confidence            799999999999999999999999999999999999999999999998777

>d1uhpa_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=2.8e-16  Score=105.09  Aligned_cols=52  Identities=33%  Similarity=0.563  Sum_probs=50.3

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .++||++|.++|||+++|+|++||+|++|||+++.+++|++|+++||+++..
T Consensus        41 ~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v~~~t~~eav~~lk~~~~~   92 (107)
T d1uhpa_          41 EGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFKTAKEP   92 (107)
T ss_dssp             CCCEEEEECSSSHHHHTTCCCSSCEEEEETTEECTTCCHHHHHHHHHHCCSS
T ss_pred             CCEEEEEECCCCHHHHhCCCcceeEEeEECCEECCCCCHHHHHHHHHhCCCc
Confidence            3799999999999999999999999999999999999999999999999888

>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.64  E-value=1.3e-16  Score=104.04  Aligned_cols=52  Identities=37%  Similarity=0.558  Sum_probs=49.9

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .++||++|.++|||+++|+|++||+|++|||+++.+++|++|+++|++++..
T Consensus        31 ~gi~I~~V~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~   82 (93)
T d1rgra_          31 PSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSI   82 (93)
T ss_dssp             CCCCEEEECTTSHHHHHCCCCTTCEEEEETTEECSSSCHHHHHHHHHHTTTE
T ss_pred             CCEEEEEECCCChHHhcCCCCcCcEEEEECCEECCCCCHHHHHHHHHcCCCE
Confidence            3899999999999999999999999999999999999999999999998777

>d1ozia_ b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Phosphatase hPTP1e
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.64  E-value=2.4e-16  Score=103.99  Aligned_cols=52  Identities=40%  Similarity=0.654  Sum_probs=49.9

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .++||.+|.++|||+++|+|++||+|++|||+++.+++|++|+++||+++..
T Consensus        37 ~~i~V~~V~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~~a~~~lk~~~~~   88 (99)
T d1ozia_          37 GGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQV   88 (99)
T ss_dssp             CCEEEEEECSSSHHHHHTCCCTTCEEEEETTEECSSCCHHHHHHHHHHSCSE
T ss_pred             CCEEEEEECCCChHHhcCCCCccCEEEEECCEEcCCCCHHHHHHHHHCCCCe
Confidence            3799999999999999999999999999999999999999999999998777

>d1ihja_ b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Inad
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.62  E-value=3.7e-16  Score=102.07  Aligned_cols=51  Identities=37%  Similarity=0.589  Sum_probs=49.5

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      ++||++|.|+|||+++|+|++||+|++|||+++.+++|++++++|++++..
T Consensus        36 gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~ll~~~~~~   86 (94)
T d1ihja_          36 GIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFK   86 (94)
T ss_dssp             EEEEEEECTTSHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHHSCSE
T ss_pred             CEEEEEECCCCHHHHhCCCChhcEEEEECCEECCCCCHHHHHHHHHcCCCE
Confidence            799999999999999999999999999999999999999999999998777

>d1p1da2 b.36.1.1 (A:115-213) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.61  E-value=5.9e-16  Score=102.04  Aligned_cols=52  Identities=17%  Similarity=0.307  Sum_probs=50.3

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .++||+.|.++|+|+++|+|++||+|++|||+++.+++|++++++|++++..
T Consensus        38 ~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~ll~~~~~~   89 (99)
T d1p1da2          38 DPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCEDL   89 (99)
T ss_dssp             CCCEEEECCSSSHHHHTSCCCTTCEEEEETTEEGGGCCHHHHHHHHHHCTTC
T ss_pred             CCEEEEEEcCCchhhhcCCCCCCCEEEeeCCEECCCCCHHHHHHHHHcCCCe
Confidence            3799999999999999999999999999999999999999999999999888

>d1whaa_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=9.3e-16  Score=102.12  Aligned_cols=52  Identities=31%  Similarity=0.523  Sum_probs=50.0

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .++||.+|.++|+|+++|+|++||+|++|||+++.+++|++++++|++++..
T Consensus        38 ~gi~V~~v~~gs~A~~~G~L~~GD~Il~INg~~v~~~~~~ev~~~l~~~~~~   89 (105)
T d1whaa_          38 AGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAASPT   89 (105)
T ss_dssp             CSCEEEECCTTSSHHHHSSCCTTCEEEEESSCBCTTCCHHHHHHHHTSCCSC
T ss_pred             CCEEEEEEcCCCchhhcCCccCCCEEEEECCEEcCCCcHHHHHHHHHcCCCe
Confidence            3799999999999999999999999999999999999999999999998877

>d1um1a_ b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1849
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=7.5e-16  Score=103.42  Aligned_cols=51  Identities=31%  Similarity=0.570  Sum_probs=49.5

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      ++||.+|.++|||+++|+|++||+|++|||+++.+++|++|+++||+++..
T Consensus        37 ~i~V~~v~~gg~A~~~G~L~~GD~Il~INg~~v~~~~~~ev~~llk~~~~~   87 (110)
T d1um1a_          37 GLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHGGKK   87 (110)
T ss_dssp             SEEEEEECTTSHHHHHSCCCTTCEEEEESSCBCSSCCHHHHHHHHHTCCSE
T ss_pred             CEEEEEECCCCHHHHcCCCccCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence            799999999999999999999999999999999999999999999998877

>d2f0aa1 b.36.1.1 (A:251-342) Segment polarity protein dishevelled homolog Dvl-2 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Segment polarity protein dishevelled homolog Dvl-2
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.58  E-value=1.4e-15  Score=98.89  Aligned_cols=50  Identities=34%  Similarity=0.561  Sum_probs=47.5

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTP   92 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~   92 (175)
                      .++||++|.++|||+++|+|++||+|++|||+++.+++|++|+++||++.
T Consensus        29 ~~i~I~~I~~gg~A~~~G~L~~GD~Il~VNg~~l~~~s~~eav~llk~~~   78 (92)
T d2f0aa1          29 GGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDIV   78 (92)
T ss_dssp             CCEEEEEEBTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCcHHHcCCCCCccEEEEECCEECCCCCHHHHHHHHHhcc
Confidence            38999999999999999999999999999999999999999999998753

>d1ujua_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=4.3e-16  Score=104.80  Aligned_cols=52  Identities=33%  Similarity=0.597  Sum_probs=50.0

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .++||..|.++|||+++|+|++||+|++|||+++.+++|++|+++||+++..
T Consensus        44 ~gi~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~t~~ea~~~lk~~~~~   95 (111)
T d1ujua_          44 EGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRSVGDT   95 (111)
T ss_dssp             CCCEEEEECTTSHHHHHSSCCTTCBCCBBSSCBCTTSCHHHHHHHHSSCSSE
T ss_pred             CCEEEEEECCCChHHHcCCCccceeeeeeCCcccCCCCHHHHHHHHHcCCCe
Confidence            4899999999999999999999999999999999999999999999998777

>d1rgwa_ b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Zasp (Cypher, Oracle 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=2e-15  Score=96.71  Aligned_cols=51  Identities=22%  Similarity=0.354  Sum_probs=48.4

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .++||..|.++|||+++| |++||+|++|||+++.+++|++++++|++++..
T Consensus        25 ~~v~V~~v~~gs~A~~~~-L~~GD~Il~VNg~~v~~~s~~ev~~~i~~~~~~   75 (85)
T d1rgwa_          25 MPLTISRITPGSKAAQSQ-LSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYN   75 (85)
T ss_dssp             SCCBEEEECTTSHHHHSS-CCCCSBEEEETTEECTTCCHHHHHHHHTTCSSC
T ss_pred             CCEEEEEecCCChHHhCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCE
Confidence            378999999999999887 999999999999999999999999999998877

>d1qava_ b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.57  E-value=2e-15  Score=97.72  Aligned_cols=51  Identities=35%  Similarity=0.500  Sum_probs=49.5

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      ++||.+|.++|+|+++|.|++||+|++|||+++.+++|++++.+|++++..
T Consensus        31 ~i~V~~V~~~~~A~~~G~L~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~   81 (90)
T d1qava_          31 PILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKE   81 (90)
T ss_dssp             EEEEEEECTTSHHHHTTCCCTTEEEEEETTEECTTCCHHHHHHHHHTCCSE
T ss_pred             CEEEEEEcCCCceeeCCCCCccCEEEEECCEECCCCCHHHHHHHHHhCCCe
Confidence            789999999999999999999999999999999999999999999998777

>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor-interacting protein 1, GRIP1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.57  E-value=3.5e-15  Score=97.54  Aligned_cols=52  Identities=17%  Similarity=0.394  Sum_probs=49.8

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .++||.+|.++|+|+++|+|++||+|++|||+++.+++|++++++||+++..
T Consensus        28 ~~v~I~~I~~g~~A~~~g~L~~GD~Il~INg~~v~~~~~~ev~~~l~~~~~~   79 (95)
T d1n7ea_          28 DPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGET   79 (95)
T ss_dssp             SCCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSE
T ss_pred             CCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence            3789999999999999999999999999999999999999999999998777

>d1x5qa1 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=2.6e-15  Score=98.54  Aligned_cols=50  Identities=30%  Similarity=0.565  Sum_probs=48.5

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      ++||+.|.++|||+++| |++||+|++|||+++.+++|.+++.+|++++..
T Consensus        40 ~i~V~~V~~gg~A~~~G-L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~   89 (97)
T d1x5qa1          40 GIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAEHHEAVEALRGAGTA   89 (97)
T ss_dssp             SEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHSCCSE
T ss_pred             CEEEEEECCCChhHhhc-ccCCCEEEEECCEECCCCCHHHHHHHHhCCCCE
Confidence            79999999999999999 999999999999999999999999999998777

>d1rzxa_ b.36.1.1 (A:) GTPase-binding domain of the cell polarity protein par6 (Par-6B) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: GTPase-binding domain of the cell polarity protein par6 (Par-6B)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.56  E-value=2.9e-15  Score=98.46  Aligned_cols=51  Identities=20%  Similarity=0.385  Sum_probs=49.5

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      |+||++|.++|||+++|+|++||+|++|||+++.+++|++++.+|++++..
T Consensus        39 gi~I~~v~~gg~A~~~G~l~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~   89 (98)
T d1rzxa_          39 GIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMMVANSSN   89 (98)
T ss_dssp             EEEEEEECTTCHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHTCTE
T ss_pred             CEEEEEECCCChHHhcCcCCCCcEEeeECCEECCCCCHHHHHHHHHcCCCe
Confidence            799999999999999999999999999999999999999999999998877

>d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.56  E-value=3.8e-15  Score=96.60  Aligned_cols=51  Identities=22%  Similarity=0.316  Sum_probs=49.1

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .|+||..|.++|+|+++| |++||+|++|||+++.+++|.+++.+|++++..
T Consensus        32 ~g~~V~~V~~~g~A~~~g-L~~GD~Il~VNg~~v~~~t~~~~~~~l~~~~~~   82 (91)
T d1m5za_          32 KGVYVKNIRPAGPGDLGG-LKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNK   82 (91)
T ss_dssp             SCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTSTTE
T ss_pred             CCEEEEEECCCChhHhCc-CCCCCEEEEECCEECCCCCHHHHHHHHHCCCCE
Confidence            389999999999999999 999999999999999999999999999998887

>d1ujda_ b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA0559
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=3.1e-15  Score=101.37  Aligned_cols=51  Identities=24%  Similarity=0.368  Sum_probs=49.5

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      ++||..|.++|+|+++|+|++||+|++|||+++.+++|++|+++|+++...
T Consensus        50 gi~I~~V~~gs~A~~~G~L~~GD~Il~INg~~v~~~s~~e~~~~i~~~~~~  100 (117)
T d1ujda_          50 GAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQSGE  100 (117)
T ss_dssp             EEEEEEECTTCHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHSCCSSC
T ss_pred             CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCcHHHHHHHHHcCCCe
Confidence            789999999999999999999999999999999999999999999998877

>d1x45a1 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=4.5e-15  Score=95.03  Aligned_cols=52  Identities=17%  Similarity=0.404  Sum_probs=49.7

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .++||.+|.++|||+++|+|++||+|++|||+++.+++|++++++||+++..
T Consensus        26 ~~i~I~~v~~gg~A~~~G~l~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~   77 (85)
T d1x45a1          26 PTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQ   77 (85)
T ss_dssp             CCCEEEEECTTCHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTC
T ss_pred             CCEEEEEeCCCCHHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHHcCCCC
Confidence            3799999999999999999999999999999999999999999999998776

>d1uewa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=6.1e-15  Score=99.50  Aligned_cols=51  Identities=25%  Similarity=0.365  Sum_probs=49.3

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      ++||.+|.++|+|+++|+|++||+|++|||+++.+++|++++++||+++..
T Consensus        44 ~~~I~~I~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~ev~~ll~~~~~~   94 (114)
T d1uewa_          44 PHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLIKDAGLS   94 (114)
T ss_dssp             SCEEEEECTTCTTGGGSSCCTTCBEEEETTBCTTTSCHHHHHHHHHHTTTE
T ss_pred             CEEEEEECCCCHHHhhccCCcCcEEeEeCCcccCCCcHHHHHHHHHcCCCe
Confidence            689999999999999999999999999999999999999999999998777

>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=5.1e-15  Score=95.39  Aligned_cols=51  Identities=39%  Similarity=0.670  Sum_probs=49.6

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      ++||.+|.++|+|+++|+|++||+|++|||+++.+++|++++++||++++.
T Consensus        31 ~i~I~~v~~~g~A~~~g~l~~GD~Il~INg~~v~~~~~~~v~~~l~~~~~~   81 (88)
T d2fnea1          31 PIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGT   81 (88)
T ss_dssp             EEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSS
T ss_pred             CEEEEEEcCCChHHHhCCCcCCcEEEEECCEECCCCCHHHHHHHHHcCCCc
Confidence            789999999999999999999999999999999999999999999999887

>d1i16a_ b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=5e-15  Score=102.19  Aligned_cols=51  Identities=22%  Similarity=0.427  Sum_probs=49.0

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      ++||.+|.++|+|+++|+|++||+|++|||+++.+++|++|+++||+++..
T Consensus        58 ~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~~~~~t~~eav~~l~~~~~~  108 (130)
T d1i16a_          58 PLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDG  108 (130)
T ss_dssp             CCEEEEECSSCCCSSSCCCCTTCCEEECSSCBGGGSCHHHHHHHHHTSCSS
T ss_pred             CEEEEEECCCChHHhcCCcccCceeeeECCeecCCCcHHHHHHHHHcCCCC
Confidence            789999999999999999999999999999999999999999999988764

>d1fc6a3 b.36.1.3 (A:157-248) Photosystem II D1 C-terminal processing protease {Algae (Scenedesmus obliquus) [TaxId: 3088]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Photosystem II D1 C-terminal processing protease
species: Algae (Scenedesmus obliquus) [TaxId: 3088]

Probab=99.54  E-value=1.3e-14  Score=94.20  Aligned_cols=72  Identities=21%  Similarity=0.291  Sum_probs=60.9

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCcccceeeeee
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAKAKPCPTVPSEPNANATTGEKTTFYFHFQV  123 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  123 (175)
                      +++|..+.++|||+++| |++||+|++|||+++.++++++++.+|+.....                           .+
T Consensus        20 ~v~V~~v~~gsPA~~AG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~g~~g~---------------------------~v   71 (92)
T d1fc6a3          20 DVVVLTPAPGGPAEKAG-ARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADS---------------------------QV   71 (92)
T ss_dssp             CEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHCBSTTC---------------------------EE
T ss_pred             eEEEEEecCCCChhHHh-hHcCCcceecCceEcCCCCHHHHHHHhhCCCCC---------------------------EE
Confidence            68999999999999999 999999999999999999999999999965554                           38


Q ss_pred             eeeecccCCCCCCCCCceEEEEEEe
Q psy1521         124 KLVVLRDTVTKEDDLLEFVDVELTK  148 (175)
Q Consensus       124 ~l~v~r~~~~~~~~~~~~~~v~l~k  148 (175)
                      .|++.|+...     ..+++++|.+
T Consensus        72 ~l~i~R~g~~-----~~~~~~~l~R   91 (92)
T d1fc6a3          72 EVVLHAPGAP-----SNTRTLQLTR   91 (92)
T ss_dssp             EEEEEETTEE-----EEEEEEEEEC
T ss_pred             EEEEEECCCc-----CcEEEEEEEe
Confidence            9999886432     2356777764

>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Na+/H+ exchanger regulatory factor, NHERF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=8.5e-15  Score=94.90  Aligned_cols=50  Identities=26%  Similarity=0.462  Sum_probs=48.5

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      ++||..|.++|||+++| |++||+|++|||+++.+++|++++++|++++..
T Consensus        28 ~~~V~~V~~g~~A~~aG-l~~GD~Il~VNg~~v~~~t~~e~~~ll~~~~~~   77 (91)
T d1g9oa_          28 GQYIRLVEPGSPAEKAG-LLAGDRLVEVNGENVEKETHQQVVSRIRAALNA   77 (91)
T ss_dssp             SEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCSSE
T ss_pred             CEEEEEEcCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence            78999999999999999 999999999999999999999999999998877

>d2f5ya1 b.36.1.1 (A:19-95) Regulator of G-protein signaling 3, RGS3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulator of G-protein signaling 3, RGS3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=5.7e-15  Score=92.81  Aligned_cols=50  Identities=18%  Similarity=0.292  Sum_probs=48.4

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      ++||..|.++|||+++| |++||+|++|||+++.+++|.+++.++++++..
T Consensus        19 ~~~V~~V~~gspA~~aG-L~~GD~Il~Vng~~v~~~~~~~v~~~i~~~~~~   68 (77)
T d2f5ya1          19 PVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWKCVELAHEIRSCPSE   68 (77)
T ss_dssp             SCEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCSSE
T ss_pred             CEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHCCCCE
Confidence            68999999999999999 999999999999999999999999999998877

>d2cssa1 b.36.1.1 (A:8-115) Regulating synaptic membrane exocytosis protein 1, RIMS1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulating synaptic membrane exocytosis protein 1, RIMS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=4.2e-15  Score=99.37  Aligned_cols=51  Identities=18%  Similarity=0.312  Sum_probs=48.2

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      |+||++|.++|+|+++|+|++||+|++|||+++.+++|++|+++|+++...
T Consensus        48 gi~V~~v~~gg~A~~~g~L~~GD~Il~VNg~~~~~~t~~ea~~~l~~~~~~   98 (108)
T d2cssa1          48 GAFITKVKKGSLADVVGHLRAGDEVLEWNGKPLPGATNEEVYNIILESKSE   98 (108)
T ss_dssp             EEEEEEECTTSHHHHTSCCCTTCEEEEESSCBCTTSCHHHHHHHHHHGGGC
T ss_pred             CEEEEEECCCCchhhcCCCCcCCEEEEECCEECCCCCHHHHHHHHHhCCCC
Confidence            799999999999999999999999999999999999999999999976543

>d2h3la1 b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Erbin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=9.1e-15  Score=96.87  Aligned_cols=50  Identities=38%  Similarity=0.617  Sum_probs=47.2

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .|+||++|.++|||++  +|++||+|++|||+++.+++|++|+++|++++..
T Consensus        43 ~gI~I~~V~~gs~A~~--~L~~GD~Il~VNg~~v~~~t~~eav~~l~~~~~~   92 (103)
T d2h3la1          43 DGIFVTRVQPEGPASK--LLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNT   92 (103)
T ss_dssp             CSEEEEEECTTSTTTT--TCCTTCEEEEETTEECSSCCHHHHHHHHHHCCSE
T ss_pred             CCEEEEEeCCCChHHh--ccCCCCEEEEECCEECCCCCHHHHHHHHHhCCCe
Confidence            3899999999999986  4999999999999999999999999999998887

>d1tp5a1 b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.53  E-value=6.9e-15  Score=97.29  Aligned_cols=52  Identities=35%  Similarity=0.518  Sum_probs=49.8

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .|+||..|.++|+|+++|+|++||+|++|||+++.+++|++|+++|++++..
T Consensus        33 ~gv~V~~v~~gs~A~~~G~l~~GD~Il~INg~~v~~~~~~ev~~~l~~~~~~   84 (102)
T d1tp5a1          33 EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQT   84 (102)
T ss_dssp             CCEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHTSCSE
T ss_pred             CCEEEEEecCCchHHHcCCCcccCEEEEECCeEcCCCCHHHHHHHHHcCCCe
Confidence            4899999999999999999999999999999999999999999999988776

>d1vb7a_ b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ-LIM protein mystique
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.52  E-value=6.4e-15  Score=96.05  Aligned_cols=50  Identities=28%  Similarity=0.479  Sum_probs=48.1

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      ++||..|.+++||+++| |++||+|++|||+++.+++|.+++++|++++..
T Consensus        31 ~i~V~~v~~gs~A~~~g-L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~   80 (94)
T d1vb7a_          31 PIIVTKVTERGKAEAAD-LRPGDIIVAINGQSAENMLHAEAQSKIRQSASP   80 (94)
T ss_dssp             EEECCCBCTTSSHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCCSS
T ss_pred             CEEEEeccCCChhhhCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence            68999999999999988 999999999999999999999999999998877

>d1uepa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=5.4e-15  Score=98.02  Aligned_cols=50  Identities=24%  Similarity=0.384  Sum_probs=47.7

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPA   93 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~   93 (175)
                      ++||..|.++|||+++|+|++||+|++|||+++.+++|++|+++|++++.
T Consensus        35 ~i~V~~v~~g~~A~~~G~L~~GD~Il~VNg~~v~~~t~~e~~~~l~~~~~   84 (103)
T d1uepa_          35 PILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAAR   84 (103)
T ss_dssp             CCBEEEECTTSTTGGGTCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHH
T ss_pred             cEEEEEECCCChHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence            68999999999999999999999999999999999999999999998754

>d1q3oa_ b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Shank1, PDZ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.52  E-value=1.1e-14  Score=96.55  Aligned_cols=50  Identities=18%  Similarity=0.359  Sum_probs=48.4

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      ++||..|.++|||+++| |++||+|++|||+++.+++|++++++||+++..
T Consensus        44 ~~~I~~v~~g~~A~~aG-L~~GD~Il~INg~~v~~~~h~evv~~ik~~~~~   93 (104)
T d1q3oa_          44 LQYLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNT   93 (104)
T ss_dssp             SEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHHTTTE
T ss_pred             CEEEEEECCCCHHHHcC-CCCCCEEEEEcCeEcCCCCHHHHHHHHHcCCCe
Confidence            68999999999999999 999999999999999999999999999998777

>d1kwaa_ b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Cask/Lin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=8.8e-15  Score=94.25  Aligned_cols=51  Identities=25%  Similarity=0.315  Sum_probs=49.3

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      ++||.+|.++|||+++|+|++||+|++|||+++.+++|++++++|++++..
T Consensus        26 ~~~I~~v~~gg~A~~~g~l~~GD~Il~INg~~v~~~~~~~~~~ll~~~~~~   76 (88)
T d1kwaa_          26 HCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGS   76 (88)
T ss_dssp             GEEEEEECTTSHHHHHTCCCTTCEEEEETTEEGGGSCHHHHHHHHHHCCEE
T ss_pred             CEEEEEECCCCHHHHcCCCccCcEEEEECCEECCCCCHHHHHHHHHcCCCc
Confidence            789999999999999999999999999999999999999999999998777

>d1wi4a1 b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntaxin binding protein 4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.52  E-value=1.2e-14  Score=95.17  Aligned_cols=51  Identities=25%  Similarity=0.478  Sum_probs=48.5

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      ++||++|.++|+|+++|+|++||+|++|||+++.+++|++|+++||++...
T Consensus        35 ~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~ea~~~l~~~~~~   85 (96)
T d1wi4a1          35 LVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRAKLR   85 (96)
T ss_dssp             SEEEEEECTTSHHHHHCSCCTTCBEEEETTSCCTTCCHHHHHHHHHHSCCS
T ss_pred             CEEEEEEeCCCccccCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccCC
Confidence            789999999999999999999999999999999999999999999987544

>d1qaua_ b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neuronal nitric oxide synthase, NNOS
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.51  E-value=4.1e-14  Score=94.98  Aligned_cols=51  Identities=22%  Similarity=0.387  Sum_probs=49.3

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      ++||+.|.++|||+++|+|++||+|++|||+++.+++|++++++|++++..
T Consensus        27 ~i~I~~v~~ggpA~~~G~L~~GD~Il~INg~~v~~~s~~e~~~~l~~~~~~   77 (112)
T d1qaua_          27 PVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASE   77 (112)
T ss_dssp             CEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTSCHHHHHHHHHHSCSS
T ss_pred             CEEEEEEcCCCHHHHhhhcccccEeEEECCcCccCCCHHHHHHHHHcCCCC
Confidence            799999999999999999999999999999999999999999999998766

>d1x6da1 b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.4e-14  Score=96.61  Aligned_cols=52  Identities=29%  Similarity=0.592  Sum_probs=49.9

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .++||.+|.++|+|+++|+|++||+|++|||+++.+++|++|+++||+++..
T Consensus        35 ~~i~V~~v~~gs~A~~~g~L~~GD~Il~VNg~~v~~~~~~ea~~~l~~~~~~   86 (107)
T d1x6da1          35 KVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAREP   86 (107)
T ss_dssp             SSCEEEEECSSSHHHHHTSSCTTCBCCEETTEECSSCCHHHHHHHHHHTTSS
T ss_pred             CCEEEEEECCCCHHHHcCCCCcCCEEEEECCEecCCCCHHHHHHHHHcCCCC
Confidence            4889999999999999999999999999999999999999999999998877

>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=3.4e-14  Score=96.95  Aligned_cols=51  Identities=25%  Similarity=0.398  Sum_probs=48.4

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPA   93 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~   93 (175)
                      .++||++|.++|+|+++|+|++||+|++|||+++.+++|++|+++||++..
T Consensus        44 ~~i~I~~v~~gg~A~~~g~L~~GD~Il~INg~~v~~~t~~eav~~l~~~~~   94 (123)
T d1ueqa_          44 EFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVPI   94 (123)
T ss_dssp             CCCEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTSCHHHHHHHHHTSCT
T ss_pred             CCEEEEEECCCCHHHHcCCCeeCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            379999999999999999999999999999999999999999999998753

>d1r6ja_ b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.7e-14  Score=91.67  Aligned_cols=48  Identities=17%  Similarity=0.273  Sum_probs=46.6

Q ss_pred             EEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          46 LVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        46 ~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      +|.+|.++|||+++| |++||+|++|||+++.+++|++++++|++++..
T Consensus        26 ~V~~v~~g~~A~~~G-l~~GD~Il~INg~~v~~~t~~~~~~ll~~~~~~   73 (82)
T d1r6ja_          26 KITSIVKDSSAARNG-LLTEHNICEINGQNVIGLKDSQIADILSTSGTV   73 (82)
T ss_dssp             EEEEECTTSHHHHHT-CCSSEEEEEETTEECTTCCHHHHHHHHHHSCSE
T ss_pred             EEEEECCCChHHhcC-cCCCCEEEEeCCeEEeeCCHHHHHHHHHcCCCE
Confidence            699999999999999 999999999999999999999999999999887

>d1v62a_ b.36.1.1 (A:) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.5e-14  Score=98.04  Aligned_cols=52  Identities=23%  Similarity=0.339  Sum_probs=49.8

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .++||.+|.++|+|+++|+|++||+|++|||+++.+++|++++++|++++..
T Consensus        42 ~gi~V~~I~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~~v~~~l~~~~~~   93 (117)
T d1v62a_          42 SVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLASISEK   93 (117)
T ss_dssp             CEEEEEECCTTSHHHHHTCCCTTCBEEEETTEETTSCCHHHHHHHHHSCSSE
T ss_pred             CCEEEEEECCCCHHHHcCCCChhheeeeECCEecCCCCHHHHHHHHHcCCCc
Confidence            3789999999999999999999999999999999999999999999998777

>d1wi2a_ b.36.1.1 (A:) PDZ domain containing protein 11, Pdzk11 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ domain containing protein 11, Pdzk11
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.50  E-value=2.9e-14  Score=94.54  Aligned_cols=48  Identities=33%  Similarity=0.646  Sum_probs=46.3

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTP   92 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~   92 (175)
                      ++||..|.++|||+++| |++||+|++|||+++.+++|++++++||++.
T Consensus        42 gi~V~~V~~~s~A~~~G-L~~GD~Il~VNg~~v~~~~~~ev~~llk~~~   89 (104)
T d1wi2a_          42 GIFISKVIPDSDAHRAG-LQEGDQVLAVNDVDFQDIEHSKAVEILKTAR   89 (104)
T ss_dssp             CCEEEEECTTSHHHHHT-CCTTCEEEEETTEECSSCCHHHHHHHHHHSS
T ss_pred             CEEEEEECCCChhHhcc-cccCCEEEEECCEECCCCCHHHHHHHHhcCC
Confidence            79999999999999999 9999999999999999999999999999864

>d1va8a1 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Maguk p55 subfamily member 5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.48  E-value=2.9e-14  Score=93.89  Aligned_cols=52  Identities=25%  Similarity=0.381  Sum_probs=49.8

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .++||.+|.++|+|+++|+|++||+|++|||+++.+++|++++++||+++..
T Consensus        41 ~~i~I~~V~~gs~A~~~g~l~~GD~Il~VNg~~v~~~~~~~~~~ll~~~~~~   92 (100)
T d1va8a1          41 DSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGT   92 (100)
T ss_dssp             SSEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCEE
T ss_pred             CCEEEEEECCCChhhhhcccCccCEEEEECCEEEcCCCHHHHHHHHHcCCCe
Confidence            4899999999999999999999999999999999999999999999998776

>d1wg6a_ b.36.1.1 (A:) Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.48  E-value=1.5e-14  Score=99.22  Aligned_cols=50  Identities=36%  Similarity=0.593  Sum_probs=47.7

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPA   93 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~   93 (175)
                      ++||.+|.++|+|+++|+|++||+|++|||+++.+++|++|+++||++..
T Consensus        56 ~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~e~~~~lr~a~~  105 (127)
T d1wg6a_          56 GIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMS  105 (127)
T ss_dssp             EEEEEECCSSSSTHHHHTSCSCCBEEEETTEESTTSCHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCchhccCCCCCCCEEEeECCEECCCCCHHHHHHHHHhccc
Confidence            78999999999999999999999999999999999999999999998643

>d1w9ea1 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=5.5e-14  Score=89.85  Aligned_cols=51  Identities=29%  Similarity=0.470  Sum_probs=48.0

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .++||.+|.++|||+++| |++||+|++|||+++.+++|++++.+|+++...
T Consensus        25 ~g~~V~~v~~gspA~~aG-L~~GD~Il~Vng~~v~~~~~~~v~~~lk~~~~~   75 (85)
T d1w9ea1          25 NGIFVQLVQANSPASLVG-LRFGDQVLQINGENCAGWSSDKAHKVLKQAFGE   75 (85)
T ss_dssp             TEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHHCCSS
T ss_pred             CCEEEEEECCCCHHHHcC-CCCccEEEEECCEEeCCCCHHHHHHHHhcCCCC
Confidence            389999999999999999 999999999999999999999999999987655

>d1y7na1 b.36.1.1 (A:12-90) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=3.2e-14  Score=89.74  Aligned_cols=48  Identities=19%  Similarity=0.409  Sum_probs=46.1

Q ss_pred             EEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          46 LVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        46 ~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      +|.+|.++|+|+++| |++||+|++|||+++.+++|++++++|++++..
T Consensus        23 ~V~~V~~gs~A~~~g-L~~GD~Il~INg~~v~~~~~~~~~~ll~~~~~~   70 (79)
T d1y7na1          23 IICSLMRGGIAERGG-VRVGHRIIEINGQSVVATPHEKIVHILSNAVGE   70 (79)
T ss_dssp             EEEEECTTSHHHHHT-CCSSCEEEEETTEECTTSCHHHHHHHHHHCCEE
T ss_pred             EEEEEcCCCHHHHCC-CCCCCEEEEECCEEeCCCCHHHHHHHHHcCCCE
Confidence            799999999999987 999999999999999999999999999998877

>d1wfva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.5e-14  Score=95.82  Aligned_cols=51  Identities=31%  Similarity=0.629  Sum_probs=49.2

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      ++||.+|.++|+|+++|+|++||+|++|||+++.+++|.+++++|++++..
T Consensus        37 ~i~I~~v~~gg~A~~~g~L~~GD~Il~INg~~v~~~s~~ev~~~l~~~~~~   87 (103)
T d1wfva_          37 DLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSGGRR   87 (103)
T ss_dssp             EEECCCBCTTSHHHHHCSSCTTCEEEEETTEECSSCCHHHHHHHHHHHCSE
T ss_pred             CEEEEEEcCCChHHhcCCCCCCCEEEEECCEECCCCcHHHHHHHHHcCCCE
Confidence            789999999999999999999999999999999999999999999998777

>d1uita_ b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Discs large 5 protein KIAA0583
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=4.3e-14  Score=95.68  Aligned_cols=51  Identities=29%  Similarity=0.464  Sum_probs=48.8

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .++||..|.++|||+++| |++||+|++|||+++.+++|++|+.+|++++..
T Consensus        42 ~gi~V~~V~~gs~A~~~g-L~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~   92 (117)
T d1uita_          42 GGIYVSKVTVGSIAHQAG-LEYGDQLLEFNGINLRSATEQQARLIIGQQCDT   92 (117)
T ss_dssp             SCEEEEEECTTSHHHHHT-CCTTCEECEETTEETTTCCHHHHHHHTTSCCSE
T ss_pred             CCEEEEEEecCChHHhCC-CCCCCEeeeECCcccCCCCHHHHHHHHHCCCCe
Confidence            489999999999999998 999999999999999999999999999998777

>d1v6ba_ b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.46  E-value=4.3e-14  Score=95.73  Aligned_cols=49  Identities=31%  Similarity=0.493  Sum_probs=47.0

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLT   91 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~   91 (175)
                      +++||.+|.++|+|+++|+|++||+|++|||+++.+++|++|+++|+++
T Consensus        43 ~~v~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~   91 (118)
T d1v6ba_          43 GKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKA   91 (118)
T ss_dssp             CSEEEEECCTTSHHHHHCSSCTTCEEEEESSCBCTTCBHHHHHHHHHHH
T ss_pred             CCEEEEEECCCChHHhcCCCCCCCEEeeECCEECCCCcHHHHHHHHHhc
Confidence            3799999999999999999999999999999999999999999999965

>d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.46  E-value=3e-14  Score=97.05  Aligned_cols=52  Identities=21%  Similarity=0.281  Sum_probs=49.6

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .++||.+|.++|+|+++|+|++||+|++|||+++.+++|++++++||+++..
T Consensus        45 ~~i~V~~I~~gg~A~~~G~L~~GD~Il~INg~~v~~~~~~e~~~~lk~~~~~   96 (122)
T d1v5qa_          45 SPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSIT   96 (122)
T ss_dssp             SCCEEEEECTTSHHHHSCCCCTTCCEEEETTEESSSSCHHHHHHHHHHHTTT
T ss_pred             CCeEEEEECCCCHHHHhCCCCcCCEEEEECCCcCCCCCHHHHHHHHHcCCCc
Confidence            3689999999999999999999999999999999999999999999988776

>d1wf7a_ b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Enigma homolog ENH
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.45  E-value=3.8e-14  Score=93.84  Aligned_cols=50  Identities=18%  Similarity=0.396  Sum_probs=47.4

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      ++||..|.++++|++++ |++||+|++|||+++.+++|++|+++|++++..
T Consensus        30 ~v~V~~v~~g~~a~~~~-L~~GD~Il~INg~~v~~~t~~eav~li~~~~~~   79 (103)
T d1wf7a_          30 PLTISSLKDGGKASQAH-VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGS   79 (103)
T ss_dssp             EEEECCCCTTCHHHHTT-CCTTCBEEEETTEECSSCCHHHHHHHHHHCSSE
T ss_pred             CEEEEecCCCChHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence            68999999999999866 999999999999999999999999999998877

>d1x5ra1 b.36.1.1 (A:8-106) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=2.4e-14  Score=94.11  Aligned_cols=51  Identities=27%  Similarity=0.282  Sum_probs=49.0

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      ++||+.+.++|||+++|+|++||+|++|||+++.+++|++++++||+++..
T Consensus        39 ~~~V~~i~~~s~A~~~G~l~~GD~Il~INg~~v~~~t~~e~~~~lr~~~~~   89 (99)
T d1x5ra1          39 PPLVCFIEPDSPAERCGLLQVGDRVLSINGIATEDGTMEEANQLLRDAALA   89 (99)
T ss_dssp             CCEEEEECTTSHHHHTSSCCTTCBCSEETTEESTTSBHHHHHHHHHHHHTT
T ss_pred             CEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCC
Confidence            789999999999999999999999999999999999999999999987666

>d1v5la_ b.36.1.1 (A:) Alpha-actinin-2 associated LIM protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Alpha-actinin-2 associated LIM protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.44  E-value=3.9e-14  Score=93.71  Aligned_cols=50  Identities=28%  Similarity=0.390  Sum_probs=47.7

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      ++||..|.++++|+.++ |++||+|++|||+++.+++|++|+++|++++..
T Consensus        30 ~i~V~~v~~g~~A~~~~-L~~GD~Il~VNg~~v~~~~~~e~v~ll~~~~~~   79 (103)
T d1v5la_          30 PLVITRITPGSKAAAAN-LCPGDVILAIDGFGTESMTHADAQDRIKAASYQ   79 (103)
T ss_dssp             EEECSCBCTTSTTGGGT-CCTTCBEEEETTEECSSCCHHHHHHHHTTCCSE
T ss_pred             CEEEEEccCCChHHhCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCE
Confidence            78999999999999877 999999999999999999999999999998777

>d1vaea_ b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Rhophilin-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.44  E-value=3.9e-14  Score=95.01  Aligned_cols=50  Identities=26%  Similarity=0.321  Sum_probs=47.6

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      ++||..|.++|||+++| |++||+|++|||+++.+++|++++++||+++..
T Consensus        37 ~v~V~~V~~~spA~~~G-L~~GD~Il~INg~~v~~~~~~ev~~llk~~~~~   86 (111)
T d1vaea_          37 PVQVHFLDPHCSASLAG-AKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGE   86 (111)
T ss_dssp             SCEECCCCTTSSHHHHH-CCTTCEEEEETTEECSSCCHHHHHHHHHHTTTS
T ss_pred             cEEEEEEcCCChHHhcc-cCcccEEEEECCEEcCCCCHHHHHHHHHcCCCC
Confidence            68999999999999999 999999999999999999999999999988654

>d2cs5a1 b.36.1.1 (A:8-113) Tyrosine-protein phosphatase non-receptor type 4, PTPN4 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tyrosine-protein phosphatase non-receptor type 4, PTPN4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=9.2e-14  Score=92.39  Aligned_cols=51  Identities=24%  Similarity=0.410  Sum_probs=47.1

Q ss_pred             CeEEEEecCCCccccc-CCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          44 GILVHDIYPEGAAAKD-ARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~-G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      ++||++|.++|||+++ |.|++||+|++|||+++.+++|++++++||++...
T Consensus        35 ~i~V~~v~~g~~A~~~~g~L~~GD~Il~VNg~~v~~~~~~e~~~ll~~~~~~   86 (106)
T d2cs5a1          35 PVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCER   86 (106)
T ss_dssp             EEEEEEECSSSTTTSSSSCCCTTCEEEEETTBCTTSSCHHHHHHHHHHHHHC
T ss_pred             CEEEEEEcCCCcchhccCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCC
Confidence            6899999999999994 67999999999999999999999999999986544

>d1x5na1 b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=2.1e-13  Score=89.81  Aligned_cols=49  Identities=35%  Similarity=0.626  Sum_probs=46.9

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTP   92 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~   92 (175)
                      .++||.+|.++|||+++| |++||+|++|||+++.+++|++++++|++++
T Consensus        34 ~gi~V~~V~~gs~A~~~g-L~~GD~Il~VNg~~v~~~~~~~v~~~lk~~~   82 (101)
T d1x5na1          34 PGIFISHVKPGSLSAEVG-LEIGDQIVEVNGVDFSNLDHKEAVNVLKSSR   82 (101)
T ss_dssp             CSEEEEEECTTSTTTTTT-CCTTCEEEEETTEETTSCCTTHHHHHHHHCS
T ss_pred             CCEEEEEECCCChHHhCC-CCcccEEEEECCEECCCCCHHHHHHHHhCCC
Confidence            489999999999999998 9999999999999999999999999999875

>d1wifa_ b.36.1.1 (A:) hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.42  E-value=6.4e-14  Score=95.88  Aligned_cols=49  Identities=20%  Similarity=0.256  Sum_probs=47.1

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTP   92 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~   92 (175)
                      +++|.+|.++|||+++|+|++||+|++|||+++.+++|++++++||++.
T Consensus        50 ~i~V~~v~~gg~A~~~G~l~~GD~Il~Ing~~v~~~~~~e~~~llr~~~   98 (126)
T d1wifa_          50 YLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNIT   98 (126)
T ss_dssp             EEEECCCCTTSSGGGCSSSCTTCBEEEESSSCCTTCCHHHHHHHHTSCC
T ss_pred             cEEEEEECCCChHHHcCCCCCCCEEEEECCEEeEeccHHHHHHHHhCCC
Confidence            5899999999999999999999999999999999999999999999865

>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tight junction protein ZO-2, Tjp2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.42  E-value=6.8e-14  Score=92.74  Aligned_cols=50  Identities=24%  Similarity=0.458  Sum_probs=46.6

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .++||.+|.++|||+ ++ |++||+|++|||+++.+++|++++++||+++..
T Consensus        39 ~~i~V~~v~~gs~A~-~~-L~~GD~Il~INg~~v~~~~~~ev~~ll~~~~~~   88 (104)
T d2csja1          39 TSIVISDVLPGGPAD-GL-LQENDRVVMVNGTPMEDVLHSFAVQQLRKSGKI   88 (104)
T ss_dssp             CBCEEEEECTTSSHH-HH-BCTTCEEEEESSCBCBTCCHHHHHHHHHHSCSE
T ss_pred             CCEEEEEECCCChhh-cC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCE
Confidence            379999999999997 45 999999999999999999999999999998777

>d1uf1a_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=2.2e-13  Score=93.48  Aligned_cols=49  Identities=39%  Similarity=0.589  Sum_probs=46.5

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTP   92 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~   92 (175)
                      .|+||..|.++|+|+++| |++||+|++|||+++.+++|++++++||+++
T Consensus        46 ~gv~V~~V~~g~~A~~~g-L~~GD~Il~INg~~v~~~s~~evv~~lr~~~   94 (128)
T d1uf1a_          46 LGIYITGVDPGSEAEGSG-LKVGDQILEVNGRSFLNILHDEAVRLLKSSR   94 (128)
T ss_dssp             CCCEEEEECTTCHHHHHT-CCTTCEEEEETTEECSSCCHHHHHHHHTTCS
T ss_pred             CCEEEEEECCCChHHhcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCC
Confidence            389999999999999999 9999999999999999999999999998754

>d1ueza_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=2.4e-13  Score=89.53  Aligned_cols=50  Identities=34%  Similarity=0.517  Sum_probs=47.1

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPA   93 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~   93 (175)
                      .++||..|.++|||+++| |++||+|++|||+++.+++|++++++||+++.
T Consensus        35 ~~i~V~~v~~gg~A~~~g-L~~GD~Il~ING~~v~~~~~~~v~~ll~~~~~   84 (101)
T d1ueza_          35 VGIYVSLVEPGSLAEKEG-LRVGDQILRVNDKSLARVTHAEAVKALKGSKK   84 (101)
T ss_dssp             CCEEEEEECTTSHHHHHT-CCSSCCEEEETTEECSSCCHHHHHHHSSSSSS
T ss_pred             CCEEEEEECCCChHHhcC-CCCCcEEEEECCEECCCCCHHHHHHHHhcCCC
Confidence            378999999999999999 99999999999999999999999999998653

>d1ufxa_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.6e-13  Score=90.73  Aligned_cols=51  Identities=25%  Similarity=0.251  Sum_probs=48.1

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      ++||.+|.++|+|+++|+|++||+|++|||+++.+++|++|+++||+++..
T Consensus        33 ~~~I~~i~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~a~~~   83 (103)
T d1ufxa_          33 LPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKT   83 (103)
T ss_dssp             SCEEEEECTTSHHHHHCSSCTTCBCCEETTEECTTCBHHHHHHHHHHHHHC
T ss_pred             CEEEEEEcCCcchhhcCCCCCCCEEEEECCEECCCCcHHHHHHHHHHccCC
Confidence            589999999999999999999999999999999999999999999987544

>d1wh1a_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=3.3e-12  Score=87.00  Aligned_cols=50  Identities=36%  Similarity=0.583  Sum_probs=43.8

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .++||.+|.++|||+++|+|++||+|++|||+++.+  +.+++.+|+.+...
T Consensus        48 ~gi~V~~v~~gg~A~~~g~L~~GD~Il~INg~~v~~--~~~~~~~l~~~~~~   97 (124)
T d1wh1a_          48 IGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQN--REEAVALLTSEENK   97 (124)
T ss_dssp             CCEEEEEECSSSHHHHTCCCCTTCEEEEESSCBCCS--HHHHHHHHTCSSCC
T ss_pred             CCEEEEEECCCChhhhhcccCCCCEEEEECCEECCC--HHHHHHHHhhCCCC
Confidence            379999999999999999999999999999999964  67788888865443

>d2f0aa1 b.36.1.1 (A:251-342) Segment polarity protein dishevelled homolog Dvl-2 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Segment polarity protein dishevelled homolog Dvl-2
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.24  E-value=4.1e-12  Score=82.09  Aligned_cols=41  Identities=24%  Similarity=0.590  Sum_probs=39.4

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      +|.|+|||+++|+|++||+|++|||.++.+++|++|+++|+
T Consensus        35 ~I~~gg~A~~~G~L~~GD~Il~VNg~~l~~~s~~eav~llk   75 (92)
T d2f0aa1          35 SIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLR   75 (92)
T ss_dssp             EEBTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             EECCCCcHHHcCCCCCccEEEEECCEECCCCCHHHHHHHHH
Confidence            58899999999999999999999999999999999999986

>d2z9ia1 b.36.1.4 (A:227-314) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease PepD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.22  E-value=1.1e-11  Score=79.35  Aligned_cols=46  Identities=17%  Similarity=0.229  Sum_probs=39.7

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLT   91 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~   91 (175)
                      .|++|.+|.++|||+++| |++||+|++|||+.+.+  ..+....++..
T Consensus        16 ~Gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~i~~--~~~~~~~i~~~   61 (88)
T d2z9ia1          16 LGAKIVEVVAGGAAANAG-VPKGVVVTKVDDRPINS--ADALVAAVRSK   61 (88)
T ss_dssp             CSEEEEEECTTSTTGGGT-CCTTCEEEEETTEECCS--HHHHHHHHHTS
T ss_pred             CcEEEEEECCCCHHHHcC-CCCCCEEEEeCCCcCCc--HHHHHHHHHhC
Confidence            389999999999999999 99999999999999965  46666666543

>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=6.7e-12  Score=81.69  Aligned_cols=42  Identities=33%  Similarity=0.581  Sum_probs=40.1

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      +|.|+|||+++|+|+.||+|++|||.++.+++|++++++|+.
T Consensus        42 ~v~~~s~A~~~G~L~~GD~Il~VNg~~v~~~t~~ea~~~lk~   83 (96)
T d2fcfa1          42 HVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRK   83 (96)
T ss_dssp             EECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHT
T ss_pred             EECCCCHHHHcCCCcCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            578999999999999999999999999999999999999985

>d1t2ma1 b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Afadin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=5.8e-12  Score=81.37  Aligned_cols=42  Identities=48%  Similarity=0.696  Sum_probs=40.4

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      +|.|||+|+++|+|++||+|++|||.++.+++|++++.+|+.
T Consensus        37 ~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~ea~~~l~~   78 (92)
T d1t2ma1          37 SVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTR   78 (92)
T ss_dssp             EECTTSHHHHHTCCCSSEEEEEETTEECTTCCHHHHHHHHHS
T ss_pred             EEcCCChHHhcCCCCcccEeeeeCCeecCCCCHHHHHHHHHc
Confidence            588999999999999999999999999999999999999985

>d1x45a1 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=8.5e-12  Score=79.40  Aligned_cols=42  Identities=38%  Similarity=0.601  Sum_probs=40.1

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      +|.|+|||+++|+|++||+|++|||+++.+++|+++.++|+.
T Consensus        32 ~v~~gg~A~~~G~l~~GD~Il~VNg~~v~~~s~~e~~~~l~~   73 (85)
T d1x45a1          32 NMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKG   73 (85)
T ss_dssp             EECTTCHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHT
T ss_pred             EeCCCCHHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            578999999999999999999999999999999999999974

>d2fe5a1 b.36.1.1 (A:223-314) Synapse-associated protein 102 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synapse-associated protein 102
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=8.3e-12  Score=80.61  Aligned_cols=42  Identities=36%  Similarity=0.680  Sum_probs=40.2

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      +|.|+|||+++|+|++||+|++|||.++.+++|++++++|+.
T Consensus        37 ~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~e~~~~lk~   78 (92)
T d2fe5a1          37 KIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKN   78 (92)
T ss_dssp             EECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHT
T ss_pred             EECCCCChhhcCCCCCCCEEEEeCCeecCCCCHHHHHHHHHc
Confidence            578999999999999999999999999999999999999985

>d1uhpa_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=9.6e-12  Score=82.53  Aligned_cols=42  Identities=29%  Similarity=0.491  Sum_probs=40.1

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      +|.|+|+|+++|+|++||+|++|||+++.+++|++|+++|+.
T Consensus        47 ~V~~gs~A~~~G~L~~GD~Il~VNg~~v~~~t~~eav~~lk~   88 (107)
T d1uhpa_          47 KIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFKT   88 (107)
T ss_dssp             EECSSSHHHHTTCCCSSCEEEEETTEECTTCCHHHHHHHHHH
T ss_pred             EECCCCHHHHhCCCcceeEEeEECCEECCCCCHHHHHHHHHh
Confidence            589999999999999999999999999999999999999973

>d1ozia_ b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Phosphatase hPTP1e
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.18  E-value=1.1e-11  Score=80.99  Aligned_cols=42  Identities=26%  Similarity=0.662  Sum_probs=40.1

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      +|.|+|+|+++|+|+.||+|++|||+++.+++|++++++|+.
T Consensus        43 ~V~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~~a~~~lk~   84 (99)
T d1ozia_          43 AIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRN   84 (99)
T ss_dssp             EECSSSHHHHHTCCCTTCEEEEETTEECSSCCHHHHHHHHHH
T ss_pred             EECCCChHHhcCCCCccCEEEEECCEEcCCCCHHHHHHHHHC
Confidence            588999999999999999999999999999999999999974

>d1uepa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=1.5e-11  Score=80.96  Aligned_cols=42  Identities=36%  Similarity=0.540  Sum_probs=40.1

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      .|.|+|+|+++|+|++||+|++|||+++.+++|++++++|+.
T Consensus        40 ~v~~g~~A~~~G~L~~GD~Il~VNg~~v~~~t~~e~~~~l~~   81 (103)
T d1uepa_          40 AVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHH   81 (103)
T ss_dssp             EECTTSTTGGGTCCCTTCEEEEETTEECTTSCHHHHHHHHHH
T ss_pred             EECCCChHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            578999999999999999999999999999999999999974

>d1ky9b2 b.36.1.4 (B:359-446) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=99.17  E-value=1.1e-11  Score=79.34  Aligned_cols=49  Identities=24%  Similarity=0.323  Sum_probs=44.7

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .|++|..|.++|||+++| |++||.|++|||+++.  +++++.+++++.+..
T Consensus        25 ~Gv~V~~V~~~spA~~aG-l~~GDvI~~ing~~v~--~~~~~~~~l~~~~~~   73 (88)
T d1ky9b2          25 QGVVVNNVKTGTPAAQIG-LKKGDVIIGANQQAVK--NIAELRKVLDSKPSV   73 (88)
T ss_dssp             SCCCBCCCCSSCTTGGGT-CCSSCEEEEETTEECS--SHHHHHHHTTTCCSC
T ss_pred             CeEEEEEECCCCHHHHcC-CCCCcEEEEECCEEcC--CHHHHHHHHHhCCCE
Confidence            489999999999999999 9999999999999995  578999999887766

>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.17  E-value=1.4e-11  Score=79.67  Aligned_cols=42  Identities=38%  Similarity=0.645  Sum_probs=39.8

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      +|.|||+|+++|+|+.||+|++|||.++.+++|++++++|+.
T Consensus        37 ~V~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~   78 (93)
T d1rgra_          37 KIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKE   78 (93)
T ss_dssp             EECTTSHHHHHCCCCTTCEEEEETTEECSSSCHHHHHHHHHH
T ss_pred             EECCCChHHhcCCCCcCcEEEEECCEECCCCCHHHHHHHHHc
Confidence            578999999999999999999999999999999999999973

>d1wf8a1 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neurabin-i
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=1e-11  Score=80.46  Aligned_cols=42  Identities=36%  Similarity=0.563  Sum_probs=40.1

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      +|.|+|||+++|+|+.||+|++|||.++.+++|++++++|+.
T Consensus        39 ~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~   80 (94)
T d1wf8a1          39 TVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRN   80 (94)
T ss_dssp             EECTTCHHHHHCSSCTTCBEEEETTEECBSCCHHHHHHHHHH
T ss_pred             EECCCChHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            588999999999999999999999999999999999999974

>d1ihja_ b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Inad
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.16  E-value=1.6e-11  Score=79.58  Aligned_cols=42  Identities=38%  Similarity=0.624  Sum_probs=40.1

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      .|.|+|||+++|+|++||+|++|||.++.+++|++++++|+.
T Consensus        41 ~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~ll~~   82 (94)
T d1ihja_          41 GIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKE   82 (94)
T ss_dssp             EECTTSHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHH
T ss_pred             EECCCCHHHHhCCCChhcEEEEECCEECCCCCHHHHHHHHHc
Confidence            578999999999999999999999999999999999999974

>d1y7na1 b.36.1.1 (A:12-90) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=3.9e-11  Score=75.20  Aligned_cols=51  Identities=25%  Similarity=0.520  Sum_probs=42.7

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC--CeEEEEecCC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG--GILVHDIYPE   53 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~--gi~V~~v~~g   53 (175)
                      +|.|||+|++.| |+.||+|++|||.++.+++|++++++|+.  +...-.|.|.
T Consensus        26 ~V~~gs~A~~~g-L~~GD~Il~INg~~v~~~~~~~~~~ll~~~~~~v~l~viP~   78 (79)
T d1y7na1          26 SLMRGGIAERGG-VRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKTMPA   78 (79)
T ss_dssp             EECTTSHHHHHT-CCSSCEEEEETTEECTTSCHHHHHHHHHHCCEEEEEEEECC
T ss_pred             EEcCCCHHHHCC-CCCCCEEEEECCEEeCCCCHHHHHHHHHcCCCEEEEEEEcC
Confidence            589999999977 99999999999999999999999999974  2333345443

>d1r6ja_ b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=1.6e-11  Score=77.55  Aligned_cols=41  Identities=27%  Similarity=0.431  Sum_probs=39.1

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      +|.+||||+++| |++||+|++|||+++.+++|++++++|+.
T Consensus        29 ~v~~g~~A~~~G-l~~GD~Il~INg~~v~~~t~~~~~~ll~~   69 (82)
T d1r6ja_          29 SIVKDSSAARNG-LLTEHNICEINGQNVIGLKDSQIADILST   69 (82)
T ss_dssp             EECTTSHHHHHT-CCSSEEEEEETTEECTTCCHHHHHHHHHH
T ss_pred             EECCCChHHhcC-cCCCCEEEEeCCeEEeeCCHHHHHHHHHc
Confidence            588999999999 99999999999999999999999999984

>d1um1a_ b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1849
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=2.1e-11  Score=81.27  Aligned_cols=42  Identities=31%  Similarity=0.543  Sum_probs=40.3

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      .|.|+|+|+++|+|+.||+|++|||+++.+++|++++++|+.
T Consensus        42 ~v~~gg~A~~~G~L~~GD~Il~INg~~v~~~~~~ev~~llk~   83 (110)
T d1um1a_          42 TLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRH   83 (110)
T ss_dssp             EECTTSHHHHHSCCCTTCEEEEESSCBCSSCCHHHHHHHHHT
T ss_pred             EECCCCHHHHcCCCccCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            578999999999999999999999999999999999999985

>d1wi4a1 b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntaxin binding protein 4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.13  E-value=1.6e-11  Score=79.89  Aligned_cols=42  Identities=36%  Similarity=0.578  Sum_probs=40.1

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      .|.|||+|+++|+|+.||+|++|||+++.+++|++++++|+.
T Consensus        40 ~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~ea~~~l~~   81 (96)
T d1wi4a1          40 EVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITR   81 (96)
T ss_dssp             EECTTSHHHHHCSCCTTCBEEEETTSCCTTCCHHHHHHHHHH
T ss_pred             EEeCCCccccCCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            588999999999999999999999999999999999999974

>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=3.3e-11  Score=77.12  Aligned_cols=42  Identities=38%  Similarity=0.664  Sum_probs=40.0

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      +|.|+|+|+++|+|++||+|++|||.++.+++|++++++|++
T Consensus        36 ~v~~~g~A~~~g~l~~GD~Il~INg~~v~~~~~~~v~~~l~~   77 (88)
T d2fnea1          36 TVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKR   77 (88)
T ss_dssp             EECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHH
T ss_pred             EEcCCChHHHhCCCcCCcEEEEECCEECCCCCHHHHHHHHHc
Confidence            578999999999999999999999999999999999999974

>d1ujua_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=7.5e-12  Score=83.61  Aligned_cols=42  Identities=24%  Similarity=0.476  Sum_probs=40.3

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      +|.|+|+|+++|+|++||+||+|||+++.+++|++++++|+.
T Consensus        50 ~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~t~~ea~~~lk~   91 (111)
T d1ujua_          50 KVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRS   91 (111)
T ss_dssp             EECTTSHHHHHSSCCTTCBCCBBSSCBCTTSCHHHHHHHHSS
T ss_pred             EECCCChHHHcCCCccceeeeeeCCcccCCCCHHHHHHHHHc
Confidence            578999999999999999999999999999999999999985

>d1qava_ b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.12  E-value=3e-11  Score=77.60  Aligned_cols=42  Identities=29%  Similarity=0.475  Sum_probs=40.3

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      +|.|+|+|+++|+|+.||+|++|||.++.+++|++++.+|+.
T Consensus        36 ~V~~~~~A~~~G~L~~GD~Il~INg~~v~~~~~~~~~~~l~~   77 (90)
T d1qava_          36 KIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKK   77 (90)
T ss_dssp             EECTTSHHHHTTCCCTTEEEEEETTEECTTCCHHHHHHHHHT
T ss_pred             EEcCCCceeeCCCCCccCEEEEECCEECCCCCHHHHHHHHHh
Confidence            588999999999999999999999999999999999999975

>d1whaa_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=2.6e-11  Score=80.09  Aligned_cols=42  Identities=29%  Similarity=0.628  Sum_probs=40.3

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      +|.|+|+|+++|+|++||+|++|||+++.+++|++++.+|+.
T Consensus        44 ~v~~gs~A~~~G~L~~GD~Il~INg~~v~~~~~~ev~~~l~~   85 (105)
T d1whaa_          44 RIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTA   85 (105)
T ss_dssp             ECCTTSSHHHHSSCCTTCEEEEESSCBCTTCCHHHHHHHHTS
T ss_pred             EEcCCCchhhcCCccCCCEEEEECCEEcCCCcHHHHHHHHHc
Confidence            588999999999999999999999999999999999999985

>d1rzxa_ b.36.1.1 (A:) GTPase-binding domain of the cell polarity protein par6 (Par-6B) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: GTPase-binding domain of the cell polarity protein par6 (Par-6B)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.12  E-value=3.4e-11  Score=78.57  Aligned_cols=41  Identities=37%  Similarity=0.702  Sum_probs=39.5

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      .|.|+|+|+++|+|+.||+|++|||.++.+++|++++.+|+
T Consensus        44 ~v~~gg~A~~~G~l~~GD~Il~VNg~~v~~~~~~~~~~~l~   84 (98)
T d1rzxa_          44 RLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMMV   84 (98)
T ss_dssp             EECTTCHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             EECCCChHHhcCcCCCCcEEeeECCEECCCCCHHHHHHHHH
Confidence            57899999999999999999999999999999999999997

>d1p1da2 b.36.1.1 (A:115-213) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.12  E-value=2.6e-11  Score=79.30  Aligned_cols=42  Identities=24%  Similarity=0.434  Sum_probs=40.1

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      .|.|+|+|+++|+|+.||+|++|||.++.+++|.+++++|++
T Consensus        44 ~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~ll~~   85 (99)
T d1p1da2          44 DIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQ   85 (99)
T ss_dssp             ECCSSSHHHHTSCCCTTCEEEEETTEEGGGCCHHHHHHHHHH
T ss_pred             EEcCCchhhhcCCCCCCCEEEeeCCEECCCCCHHHHHHHHHc
Confidence            588999999999999999999999999999999999999974

>d1lcya1 b.36.1.4 (A:226-325) Mitochondrial serine protease HtrA2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Mitochondrial serine protease HtrA2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=1.6e-10  Score=75.48  Aligned_cols=48  Identities=23%  Similarity=0.411  Sum_probs=42.3

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      .|++|..|.++|||+++| |++||.|++|||+.+.  +.++..++++ .+..
T Consensus        31 ~Gv~V~~V~~~spA~~aG-l~~GDiI~~ing~~V~--s~~dl~~~l~-~g~~   78 (100)
T d1lcya1          31 HGVLIHKVILGSPAHRAG-LRPGDVILAIGEQMVQ--NAEDVYEAVR-TQSQ   78 (100)
T ss_dssp             SCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECC--SHHHHHHHHT-TCSS
T ss_pred             CcEEEEEECCCchHhhcC-CCCCcEEEEECCEEcC--CHHHHHHHhc-CCCE
Confidence            489999999999999999 9999999999999996  4688888885 4555

>d1qaua_ b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neuronal nitric oxide synthase, NNOS
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.12  E-value=3.3e-11  Score=80.40  Aligned_cols=42  Identities=26%  Similarity=0.502  Sum_probs=40.0

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      .|.|||||+++|+|++||+|++|||+++.+++|+++.++|++
T Consensus        32 ~v~~ggpA~~~G~L~~GD~Il~INg~~v~~~s~~e~~~~l~~   73 (112)
T d1qaua_          32 DLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRG   73 (112)
T ss_dssp             EECTTSHHHHHTCCCTTCEEEEETTEECTTSCHHHHHHHHHH
T ss_pred             EEcCCCHHHHhhhcccccEeEEECCcCccCCCHHHHHHHHHc
Confidence            588999999999999999999999999999999999999974

>d1sota1 b.36.1.4 (A:255-353) Stress sensor protease DegS, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Stress sensor protease DegS, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.11  E-value=2e-11  Score=79.87  Aligned_cols=72  Identities=21%  Similarity=0.383  Sum_probs=52.6

Q ss_pred             CCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCC-CCCCCCCCCCCCCCCCCCCCCcccceeee
Q psy1521          43 GGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTP-AKAKPCPTVPSEPNANATTGEKTTFYFHF  121 (175)
Q Consensus        43 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (175)
                      .|++|.+|.++|||+++| |++||.|++|||+.+.+.  .+....+.+.. ..                           
T Consensus        26 ~Gv~V~~V~~~spA~~aG-l~~GDiI~~ing~~v~~~--~~l~~~l~~~~~g~---------------------------   75 (99)
T d1sota1          26 QGIVVNEVSPDGPAANAG-IQVNDLIISVDNKPAISA--LETMDQVAEIRPGS---------------------------   75 (99)
T ss_dssp             -CEECCCCCSSSTTTSSS-CCTTCEECBSSSSBCCCS--HHHHHHHHHSCTTC---------------------------
T ss_pred             CccEEEEecCCCCHHHcC-CCcceEEEEECCEecccH--HHHHHHHHcCCCCC---------------------------
Confidence            589999999999999999 999999999999999765  56666665432 22                           


Q ss_pred             eeeeeecccCCCCCCCCCceEEEEEEeCC
Q psy1521         122 QVKLVVLRDTVTKEDDLLEFVDVELTKKA  150 (175)
Q Consensus       122 ~v~l~v~r~~~~~~~~~~~~~~v~l~k~~  150 (175)
                      .+.+.+.|+...      ..++++|.+.|
T Consensus        76 ~v~l~v~R~g~~------~~~~v~l~~~P   98 (99)
T d1sota1          76 VIPVVVMRDDKQ------LTLQVTIQEYP   98 (99)
T ss_dssp             EEEECC-----C------CCEEEECEECC
T ss_pred             EEEEEEEECCEE------EEEEEEEeCCC
Confidence            288999998653      45777777655

>d1kwaa_ b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Cask/Lin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=2.8e-11  Score=77.46  Aligned_cols=42  Identities=26%  Similarity=0.588  Sum_probs=40.1

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      .|.|||+|+++|+|++||+|++|||.++.+++|.+++++++.
T Consensus        31 ~v~~gg~A~~~g~l~~GD~Il~INg~~v~~~~~~~~~~ll~~   72 (88)
T d1kwaa_          31 RIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLRE   72 (88)
T ss_dssp             EECTTSHHHHHTCCCTTCEEEEETTEEGGGSCHHHHHHHHHH
T ss_pred             EECCCCHHHHcCCCccCcEEEEECCEECCCCCHHHHHHHHHc
Confidence            578999999999999999999999999999999999999974

>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor-interacting protein 1, GRIP1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.10  E-value=4.6e-11  Score=77.49  Aligned_cols=42  Identities=21%  Similarity=0.496  Sum_probs=40.2

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      +|.|+|+|+++|+|++||+|++|||+++.+++|++++.+|+.
T Consensus        34 ~I~~g~~A~~~g~L~~GD~Il~INg~~v~~~~~~ev~~~l~~   75 (95)
T d1n7ea_          34 SLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQM   75 (95)
T ss_dssp             EECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHT
T ss_pred             EECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            578999999999999999999999999999999999999985

>d2cssa1 b.36.1.1 (A:8-115) Regulating synaptic membrane exocytosis protein 1, RIMS1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulating synaptic membrane exocytosis protein 1, RIMS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=4.1e-11  Score=79.51  Aligned_cols=41  Identities=27%  Similarity=0.480  Sum_probs=39.4

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      .|.|||+|+++|+|+.||+|++|||.++.+++|++++++|+
T Consensus        53 ~v~~gg~A~~~g~L~~GD~Il~VNg~~~~~~t~~ea~~~l~   93 (108)
T d2cssa1          53 KVKKGSLADVVGHLRAGDEVLEWNGKPLPGATNEEVYNIIL   93 (108)
T ss_dssp             EECTTSHHHHTSCCCTTCEEEEESSCBCTTSCHHHHHHHHH
T ss_pred             EECCCCchhhcCCCCcCCEEEEECCEECCCCCHHHHHHHHH
Confidence            58899999999999999999999999999999999999986

>d1ujva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=1.4e-10  Score=75.21  Aligned_cols=43  Identities=21%  Similarity=0.254  Sum_probs=36.4

Q ss_pred             cCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcCCC
Q psy1521          51 YPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLTPA   93 (175)
Q Consensus        51 ~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~   93 (175)
                      ....+|+.++.|++||+|++|||+++.+++|++|+++||+++.
T Consensus        37 ~~~~~~~~~~~L~~GD~Il~VNg~~v~~~t~~evv~~lk~~~~   79 (96)
T d1ujva_          37 KQILDIQGCPGLCEGDLIVEINQQNVQNLSHTEVVDILKDCPI   79 (96)
T ss_dssp             EEESCGGGSTTCCSSCEEEEETTEECSSCCHHHHHHHHHHSCT
T ss_pred             eeccCcccccCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            3344566666699999999999999999999999999998753

>d1ufxa_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=2.1e-11  Score=80.28  Aligned_cols=42  Identities=33%  Similarity=0.488  Sum_probs=40.1

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      .|.|+|+|+++|+|++||+||+|||+++.+++|++++++|+.
T Consensus        38 ~i~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~   79 (103)
T d1ufxa_          38 TIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAE   79 (103)
T ss_dssp             EECTTSHHHHHCSSCTTCBCCEETTEECTTCBHHHHHHHHHH
T ss_pred             EEcCCcchhhcCCCCCCCEEEEECCEECCCCcHHHHHHHHHH
Confidence            578999999999999999999999999999999999999974

>d2f5ya1 b.36.1.1 (A:19-95) Regulator of G-protein signaling 3, RGS3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulator of G-protein signaling 3, RGS3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=5.7e-11  Score=74.08  Aligned_cols=41  Identities=22%  Similarity=0.291  Sum_probs=38.9

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      +|.|+|||+++| |+.||+|++|||+++.+++|.+++.+++.
T Consensus        24 ~V~~gspA~~aG-L~~GD~Il~Vng~~v~~~~~~~v~~~i~~   64 (77)
T d2f5ya1          24 AVDSGGPAERAG-LQQLDTVLQLNERPVEHWKCVELAHEIRS   64 (77)
T ss_dssp             EECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHT
T ss_pred             EECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHC
Confidence            578999999999 99999999999999999999999999875

>d1wi2a_ b.36.1.1 (A:) PDZ domain containing protein 11, Pdzk11 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ domain containing protein 11, Pdzk11
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.09  E-value=4.9e-11  Score=78.61  Aligned_cols=41  Identities=29%  Similarity=0.561  Sum_probs=39.1

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      .|.|+|+|+++| |++||+||+|||+++.+++|++++++|+.
T Consensus        47 ~V~~~s~A~~~G-L~~GD~Il~VNg~~v~~~~~~ev~~llk~   87 (104)
T d1wi2a_          47 KVIPDSDAHRAG-LQEGDQVLAVNDVDFQDIEHSKAVEILKT   87 (104)
T ss_dssp             EECTTSHHHHHT-CCTTCEEEEETTEECSSCCHHHHHHHHHH
T ss_pred             EECCCChhHhcc-cccCCEEEEECCEECCCCCHHHHHHHHhc
Confidence            588999999999 99999999999999999999999999974

>d1q3oa_ b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Shank1, PDZ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.09  E-value=5.7e-11  Score=78.25  Aligned_cols=41  Identities=27%  Similarity=0.499  Sum_probs=38.8

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      .|.|||||+++| |++||+|++|||+++.+++|.+++++++.
T Consensus        49 ~v~~g~~A~~aG-L~~GD~Il~INg~~v~~~~h~evv~~ik~   89 (104)
T d1q3oa_          49 SVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGHRQVVNMIRQ   89 (104)
T ss_dssp             EECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHH
T ss_pred             EECCCCHHHHcC-CCCCCEEEEEcCeEcCCCCHHHHHHHHHc
Confidence            478999999999 99999999999999999999999999974

>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Na+/H+ exchanger regulatory factor, NHERF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=7.3e-11  Score=75.92  Aligned_cols=41  Identities=29%  Similarity=0.618  Sum_probs=39.0

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      .|.|||+|+++| |+.||+|++|||.++.+++|++++++++.
T Consensus        33 ~V~~g~~A~~aG-l~~GD~Il~VNg~~v~~~t~~e~~~ll~~   73 (91)
T d1g9oa_          33 LVEPGSPAEKAG-LLAGDRLVEVNGENVEKETHQQVVSRIRA   73 (91)
T ss_dssp             EECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHT
T ss_pred             EEcCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            578999999999 99999999999999999999999999975

>d1x6da1 b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=2.9e-11  Score=80.15  Aligned_cols=42  Identities=24%  Similarity=0.706  Sum_probs=40.0

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      .|.|||+|+++|+|++||+|++|||.++.+++|++++++|+.
T Consensus        41 ~v~~gs~A~~~g~L~~GD~Il~VNg~~v~~~~~~ea~~~l~~   82 (107)
T d1x6da1          41 RVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQ   82 (107)
T ss_dssp             EECSSSHHHHHTSSCTTCBCCEETTEECSSCCHHHHHHHHHH
T ss_pred             EECCCCHHHHcCCCCcCCEEEEECCEecCCCCHHHHHHHHHc
Confidence            588999999999999999999999999999999999999973

>d1ujda_ b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA0559
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=6.9e-11  Score=79.51  Aligned_cols=42  Identities=33%  Similarity=0.654  Sum_probs=40.3

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      +|.|+|+|+++|+|+.||+|++|||+++.+++|++++++|+.
T Consensus        55 ~V~~gs~A~~~G~L~~GD~Il~INg~~v~~~s~~e~~~~i~~   96 (117)
T d1ujda_          55 KILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQ   96 (117)
T ss_dssp             EECTTCHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHSC
T ss_pred             EECCCCHHHHcCCCCCCCEEEEECCEECCCCcHHHHHHHHHc
Confidence            588999999999999999999999999999999999999985

>d1uewa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=5.2e-11  Score=79.72  Aligned_cols=53  Identities=23%  Similarity=0.436  Sum_probs=44.8

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC--CeEEEEecCCC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG--GILVHDIYPEG   54 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~--gi~V~~v~~gg   54 (175)
                      +|.|+|+|+++|+|++||+|++|||++|.+++|++++++|+.  .-+...|.+..
T Consensus        49 ~I~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~ev~~ll~~~~~~v~l~V~r~~  103 (114)
T d1uewa_          49 RIIDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLIKDAGLSVTLRIIPQE  103 (114)
T ss_dssp             EECTTCTTGGGSSCCTTCBEEEETTBCTTTSCHHHHHHHHHHTTTEEEEEECCCS
T ss_pred             EECCCCHHHhhccCCcCcEEeEeCCcccCCCcHHHHHHHHHcCCCeEEEEEEeCC
Confidence            578999999999999999999999999999999999999974  33344455543

>d1x5ra1 b.36.1.1 (A:8-106) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=3e-11  Score=78.95  Aligned_cols=41  Identities=27%  Similarity=0.451  Sum_probs=39.4

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      ++.|+|||+++|+|++||+|++|||+++.+++|++++++|+
T Consensus        44 ~i~~~s~A~~~G~l~~GD~Il~INg~~v~~~t~~e~~~~lr   84 (99)
T d1x5ra1          44 FIEPDSPAERCGLLQVGDRVLSINGIATEDGTMEEANQLLR   84 (99)
T ss_dssp             EECTTSHHHHTSSCCTTCBCSEETTEESTTSBHHHHHHHHH
T ss_pred             EECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            57899999999999999999999999999999999999997

>d1vaea_ b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Rhophilin-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.06  E-value=6.3e-11  Score=78.97  Aligned_cols=41  Identities=29%  Similarity=0.371  Sum_probs=39.1

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      .|.|+|||+++| |++||+|++|||++|.+++|++++++|+.
T Consensus        42 ~V~~~spA~~~G-L~~GD~Il~INg~~v~~~~~~ev~~llk~   82 (111)
T d1vaea_          42 FLDPHCSASLAG-AKEGDYIVSIQGVDCKWLTVSEVMKLLKS   82 (111)
T ss_dssp             CCCTTSSHHHHH-CCTTCEEEEETTEECSSCCHHHHHHHHHH
T ss_pred             EEcCCChHHhcc-cCcccEEEEECCEEcCCCCHHHHHHHHHc
Confidence            689999999999 99999999999999999999999999973

>d1wg6a_ b.36.1.1 (A:) Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.06  E-value=4.3e-11  Score=81.68  Aligned_cols=42  Identities=33%  Similarity=0.551  Sum_probs=40.2

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      +|.|+|+|+++|+|+.||+|++|||.++.+++|++++++|+.
T Consensus        61 ~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~e~~~~lr~  102 (127)
T d1wg6a_          61 SIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRR  102 (127)
T ss_dssp             ECCSSSSTHHHHTSCSCCBEEEETTEESTTSCHHHHHHHHHH
T ss_pred             EECCCCchhccCCCCCCCEEEeECCEECCCCCHHHHHHHHHh
Confidence            689999999999999999999999999999999999999974

>d1rgwa_ b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Zasp (Cypher, Oracle 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=7.8e-11  Score=74.82  Aligned_cols=41  Identities=29%  Similarity=0.508  Sum_probs=38.2

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      .|.|+|||++.| |++||+|++|||.++.+++|++++++++.
T Consensus        31 ~v~~gs~A~~~~-L~~GD~Il~VNg~~v~~~s~~ev~~~i~~   71 (85)
T d1rgwa_          31 RITPGSKAAQSQ-LSQGDLVVAIDGVNTDTMTHLEAQNKIKS   71 (85)
T ss_dssp             EECTTSHHHHSS-CCCCSBEEEETTEECTTCCHHHHHHHHTT
T ss_pred             EecCCChHHhCC-CCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            578999999876 99999999999999999999999999975

>d1v6ba_ b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.06  E-value=6.5e-11  Score=79.73  Aligned_cols=41  Identities=32%  Similarity=0.565  Sum_probs=39.6

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      +|.|+|+|+++|+|+.||+|++|||+++.+++|++++++|+
T Consensus        49 ~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~   89 (118)
T d1v6ba_          49 AVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQ   89 (118)
T ss_dssp             ECCTTSHHHHHCSSCTTCEEEEESSCBCTTCBHHHHHHHHH
T ss_pred             EECCCChHHhcCCCCCCCEEeeECCEECCCCcHHHHHHHHH
Confidence            58899999999999999999999999999999999999997

>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=9.7e-11  Score=79.44  Aligned_cols=42  Identities=26%  Similarity=0.521  Sum_probs=40.2

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      .|.|+|+|+++|+|+.||+|++|||+++.+++|++++++|+.
T Consensus        50 ~v~~gg~A~~~g~L~~GD~Il~INg~~v~~~t~~eav~~l~~   91 (123)
T d1ueqa_          50 SVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQS   91 (123)
T ss_dssp             EECTTSHHHHTSCCCTTCEEEEETTEECTTSCHHHHHHHHHT
T ss_pred             EECCCCHHHHcCCCeeCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            578999999999999999999999999999999999999975

>d1va8a1 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Maguk p55 subfamily member 5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.04  E-value=1.1e-10  Score=76.28  Aligned_cols=42  Identities=33%  Similarity=0.670  Sum_probs=40.1

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      +|.|||+|+++|+|+.||+|++|||+++.+++|++++++|++
T Consensus        47 ~V~~gs~A~~~g~l~~GD~Il~VNg~~v~~~~~~~~~~ll~~   88 (100)
T d1va8a1          47 RIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSD   88 (100)
T ss_dssp             EECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHH
T ss_pred             EECCCChhhhhcccCccCEEEEECCEEEcCCCHHHHHHHHHc
Confidence            588999999999999999999999999999999999999974

>d1vb7a_ b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ-LIM protein mystique
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.04  E-value=1.4e-10  Score=75.02  Aligned_cols=41  Identities=20%  Similarity=0.374  Sum_probs=38.8

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      +|.|+|||++.| |++||+|++|||+++.+++|.+++.+|+.
T Consensus        36 ~v~~gs~A~~~g-L~~GD~Il~VNg~~v~~~~~~~~~~~l~~   76 (94)
T d1vb7a_          36 KVTERGKAEAAD-LRPGDIIVAINGQSAENMLHAEAQSKIRQ   76 (94)
T ss_dssp             CBCTTSSHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHT
T ss_pred             eccCCChhhhCC-CCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            689999999877 99999999999999999999999999975

>d1wifa_ b.36.1.1 (A:) hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.04  E-value=9.5e-11  Score=79.78  Aligned_cols=42  Identities=29%  Similarity=0.438  Sum_probs=40.4

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      .|.|+|+|+++|+|++||+|++|||+++.+++|++++++|++
T Consensus        55 ~v~~gg~A~~~G~l~~GD~Il~Ing~~v~~~~~~e~~~llr~   96 (126)
T d1wifa_          55 HLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQN   96 (126)
T ss_dssp             CCCTTSSGGGCSSSCTTCBEEEESSSCCTTCCHHHHHHHHTS
T ss_pred             EECCCChHHHcCCCCCCCEEEEECCEEeEeccHHHHHHHHhC
Confidence            688999999999999999999999999999999999999985

>d1tp5a1 b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.03  E-value=9.9e-11  Score=76.84  Aligned_cols=42  Identities=45%  Similarity=0.686  Sum_probs=40.2

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      .|.|||+|+++|+|+.||+|++|||.++.+++|++++.+|+.
T Consensus        39 ~v~~gs~A~~~G~l~~GD~Il~INg~~v~~~~~~ev~~~l~~   80 (102)
T d1tp5a1          39 FILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKN   80 (102)
T ss_dssp             EECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHT
T ss_pred             EecCCchHHHcCCCcccCEEEEECCeEcCCCCHHHHHHHHHc
Confidence            578999999999999999999999999999999999999975

>d1v62a_ b.36.1.1 (A:) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=1.1e-10  Score=78.55  Aligned_cols=42  Identities=31%  Similarity=0.538  Sum_probs=40.3

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      .|.|+|+|+++|+|++||+|++|||+++.+++|++++++|+.
T Consensus        48 ~I~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~~v~~~l~~   89 (117)
T d1v62a_          48 RIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLAS   89 (117)
T ss_dssp             ECCTTSHHHHHTCCCTTCBEEEETTEETTSCCHHHHHHHHHS
T ss_pred             EECCCCHHHHcCCCChhheeeeECCEecCCCCHHHHHHHHHc
Confidence            589999999999999999999999999999999999999985

>d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.03  E-value=1e-10  Score=79.23  Aligned_cols=42  Identities=24%  Similarity=0.390  Sum_probs=40.0

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      +|.|+|+|+++|+|++||+|++|||+++.+++|++++++|+.
T Consensus        51 ~I~~gg~A~~~G~L~~GD~Il~INg~~v~~~~~~e~~~~lk~   92 (122)
T d1v5qa_          51 YIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRD   92 (122)
T ss_dssp             EECTTSHHHHSCCCCTTCCEEEETTEESSSSCHHHHHHHHHH
T ss_pred             EECCCCHHHHhCCCCcCCEEEEECCCcCCCCCHHHHHHHHHc
Confidence            588999999999999999999999999999999999999973

>d1i16a_ b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=7.5e-11  Score=80.75  Aligned_cols=42  Identities=24%  Similarity=0.411  Sum_probs=40.1

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      +|.|||+|+++|+|+.||+||+|||+++.+++|++++.+|+.
T Consensus        63 ~v~~gg~A~~~G~L~~GD~Il~VNg~~~~~~t~~eav~~l~~  104 (130)
T d1i16a_          63 RIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKA  104 (130)
T ss_dssp             EECSSCCCSSSCCCCTTCCEEECSSCBGGGSCHHHHHHHHHT
T ss_pred             EECCCChHHhcCCcccCceeeeECCeecCCCcHHHHHHHHHc
Confidence            578999999999999999999999999999999999999975

>d1x5qa1 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=1.5e-10  Score=75.23  Aligned_cols=41  Identities=27%  Similarity=0.534  Sum_probs=39.1

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      .|.|||||+++| |++||+|++|||.++.+++|.+++.+++.
T Consensus        45 ~V~~gg~A~~~G-L~~GD~Il~VNg~~v~~~~~~~~~~~l~~   85 (97)
T d1x5qa1          45 RVSEEGPAARAG-VRVGDKLLEVNGVALQGAEHHEAVEALRG   85 (97)
T ss_dssp             EECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHS
T ss_pred             EECCCChhHhhc-ccCCCEEEEECCEECCCCCHHHHHHHHhC
Confidence            488999999999 99999999999999999999999999975

>d1wfva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=1.7e-10  Score=75.81  Aligned_cols=42  Identities=31%  Similarity=0.582  Sum_probs=40.0

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      +|.|+|+|+++|+|++||+|++|||.++.+++|.+++++|+.
T Consensus        42 ~v~~gg~A~~~g~L~~GD~Il~INg~~v~~~s~~ev~~~l~~   83 (103)
T d1wfva_          42 RLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKS   83 (103)
T ss_dssp             CBCTTSHHHHHCSSCTTCEEEEETTEECSSCCHHHHHHHHHH
T ss_pred             EEcCCChHHhcCCCCCCCEEEEECCEECCCCcHHHHHHHHHc
Confidence            688999999999999999999999999999999999999974

>d1k32a1 b.36.1.3 (A:763-853) Tricorn protease {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Tricorn protease
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.02  E-value=9.3e-10  Score=70.56  Aligned_cols=49  Identities=14%  Similarity=0.135  Sum_probs=42.6

Q ss_pred             CCeEEEEecCC--------CcccccCCc-CCCCEEEEECCeecCCCCHHHHHHHHHcCCCC
Q psy1521          43 GGILVHDIYPE--------GAAAKDARL-KFGDQILELTGEDFRNITHAKAMAHLRLTPAK   94 (175)
Q Consensus        43 ~gi~V~~v~~g--------g~A~~~G~L-~~GD~Il~VNG~~l~~~~~~~a~~~lk~~~~~   94 (175)
                      +++.|.+|.+|        |||+++| | ++||+|++|||+++.++  .++.++|+.....
T Consensus        12 ~~~~I~~i~~G~~~~~~~~sPa~~aG-l~k~GD~I~~IdG~~v~~~--~~~~~~l~g~~G~   69 (91)
T d1k32a1          12 DHYVVAKAYAGDYSNEGEKSPIFEYG-IDPTGYLIEDIDGETVGAG--SNIYRVLSEKAGT   69 (91)
T ss_dssp             TEEEEEEECBSCTTSTTCBCGGGGGT-CCCTTCEEEEETTEECBTT--BCHHHHHHTTTTS
T ss_pred             CeEEEEEEecCCCCCcccCChhHhcC-CCCCCCEEEEECCEeecCc--ceeEEEEecCCCC
Confidence            36789999987        9999999 7 89999999999999765  5788899877666

>d1w9ea1 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=1.8e-10  Score=73.01  Aligned_cols=41  Identities=22%  Similarity=0.353  Sum_probs=38.7

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      +|.|||||+++| |+.||+|++|||+++.+++++++..+|++
T Consensus        31 ~v~~gspA~~aG-L~~GD~Il~Vng~~v~~~~~~~v~~~lk~   71 (85)
T d1w9ea1          31 LVQANSPASLVG-LRFGDQVLQINGENCAGWSSDKAHKVLKQ   71 (85)
T ss_dssp             EECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHH
T ss_pred             EECCCCHHHHcC-CCCccEEEEECCEEeCCCCHHHHHHHHhc
Confidence            588999999999 99999999999999999999999999963

>d2cs5a1 b.36.1.1 (A:8-113) Tyrosine-protein phosphatase non-receptor type 4, PTPN4 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tyrosine-protein phosphatase non-receptor type 4, PTPN4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=1.4e-10  Score=76.63  Aligned_cols=42  Identities=31%  Similarity=0.587  Sum_probs=39.0

Q ss_pred             ccCCCChhhh-cCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAAT-DGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~-~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      .|.|+|+|++ +|+|++||+|++|||+++.+++|++++++|+.
T Consensus        40 ~v~~g~~A~~~~g~L~~GD~Il~VNg~~v~~~~~~e~~~ll~~   82 (106)
T d2cs5a1          40 RVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKA   82 (106)
T ss_dssp             EECSSSTTTSSSSCCCTTCEEEEETTBCTTSSCHHHHHHHHHH
T ss_pred             EEcCCCcchhccCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            5789999998 67899999999999999999999999999974

>d1uf1a_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=2e-10  Score=78.36  Aligned_cols=42  Identities=31%  Similarity=0.503  Sum_probs=39.8

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhCC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKGG   44 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~g   44 (175)
                      .|.|+|+|+++| |++||+||+|||+++.+++|++++++|+..
T Consensus        52 ~V~~g~~A~~~g-L~~GD~Il~INg~~v~~~s~~evv~~lr~~   93 (128)
T d1uf1a_          52 GVDPGSEAEGSG-LKVGDQILEVNGRSFLNILHDEAVRLLKSS   93 (128)
T ss_dssp             EECTTCHHHHHT-CCTTCEEEEETTEECSSCCHHHHHHHHTTC
T ss_pred             EECCCChHHhcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcC
Confidence            588999999999 999999999999999999999999999864

>d1fc6a3 b.36.1.3 (A:157-248) Photosystem II D1 C-terminal processing protease {Algae (Scenedesmus obliquus) [TaxId: 3088]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Photosystem II D1 C-terminal processing protease
species: Algae (Scenedesmus obliquus) [TaxId: 3088]

Probab=98.99  E-value=2.5e-10  Score=73.49  Aligned_cols=41  Identities=39%  Similarity=0.657  Sum_probs=38.5

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      .+.|+|||+++| |++||+|++|||.++.++++++++.+|++
T Consensus        25 ~v~~gsPA~~AG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~g   65 (92)
T d1fc6a3          25 TPAPGGPAEKAG-ARAGDVIVTVDGTAVKGMSLYDVSDLLQG   65 (92)
T ss_dssp             EECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHCB
T ss_pred             EecCCCChhHHh-hHcCCcceecCceEcCCCCHHHHHHHhhC
Confidence            468999999999 99999999999999999999999999973

>d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.98  E-value=2.7e-10  Score=73.17  Aligned_cols=41  Identities=22%  Similarity=0.282  Sum_probs=39.1

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      .|.|+|+|+++| |+.||+|++|||.++.+++|.+++.+++.
T Consensus        38 ~V~~~g~A~~~g-L~~GD~Il~VNg~~v~~~t~~~~~~~l~~   78 (91)
T d1m5za_          38 NIRPAGPGDLGG-LKPYDRLLQVNHVRTRDFDCCLVVPLIAE   78 (91)
T ss_dssp             EECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHT
T ss_pred             EECCCChhHhCc-CCCCCEEEEECCEECCCCCHHHHHHHHHC
Confidence            578999999999 99999999999999999999999999985

>d1x5na1 b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=2.2e-10  Score=74.99  Aligned_cols=41  Identities=34%  Similarity=0.618  Sum_probs=38.7

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      +|.|+|||+++| |+.||+|++|||+++.+++|++++++|+.
T Consensus        40 ~V~~gs~A~~~g-L~~GD~Il~VNg~~v~~~~~~~v~~~lk~   80 (101)
T d1x5na1          40 HVKPGSLSAEVG-LEIGDQIVEVNGVDFSNLDHKEAVNVLKS   80 (101)
T ss_dssp             EECTTSTTTTTT-CCTTCEEEEETTEETTSCCTTHHHHHHHH
T ss_pred             EECCCChHHhCC-CCcccEEEEECCEECCCCCHHHHHHHHhC
Confidence            588999999988 99999999999999999999999999874

>d2hgaa1 b.36.1.6 (A:23-125) Uncharacterized protein MTH1368 {Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: MTH1368 C-terminal domain-like
domain: Uncharacterized protein MTH1368
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.95  E-value=4.4e-09  Score=68.83  Aligned_cols=44  Identities=23%  Similarity=0.290  Sum_probs=39.7

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLT   91 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~   91 (175)
                      |++|..|.+++||++ + |++||+|++|||+.+.  ++.+....|+..
T Consensus         4 Gv~V~~V~~~sPA~~-~-L~~GD~I~~ing~~v~--~~~~l~~~i~~~   47 (103)
T d2hgaa1           4 GVQIDSVVPGSPASK-V-LTPGLVIESINGMPTS--NLTTYSAALKTI   47 (103)
T ss_dssp             CEEEEEECSSSGGGG-T-SCTTCEEEEETTEECS--SHHHHHHHHTTC
T ss_pred             cEEEEEECCCChHHh-c-CCCCCEEEEECCEEcC--CHHHHHHHHhhC
Confidence            899999999999986 6 9999999999999995  578999998764

>d1ueza_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=3e-10  Score=74.38  Aligned_cols=41  Identities=32%  Similarity=0.568  Sum_probs=39.0

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      .|.|+|+|+++| |++||+|++|||+++.+++|++++++|+.
T Consensus        41 ~v~~gg~A~~~g-L~~GD~Il~ING~~v~~~~~~~v~~ll~~   81 (101)
T d1ueza_          41 LVEPGSLAEKEG-LRVGDQILRVNDKSLARVTHAEAVKALKG   81 (101)
T ss_dssp             EECTTSHHHHHT-CCSSCCEEEETTEECSSCCHHHHHHHSSS
T ss_pred             EECCCChHHhcC-CCCCcEEEEECCEECCCCCHHHHHHHHhc
Confidence            578999999999 99999999999999999999999999985

>d1wf7a_ b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Enigma homolog ENH
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.90  E-value=7.5e-10  Score=72.66  Aligned_cols=41  Identities=24%  Similarity=0.384  Sum_probs=37.0

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      .|.|+++|++.+ |++||+|++|||+++.+++|++++++|+.
T Consensus        35 ~v~~g~~a~~~~-L~~GD~Il~INg~~v~~~t~~eav~li~~   75 (103)
T d1wf7a_          35 SLKDGGKASQAH-VRIGDVVLSIDGISAQGMTHLEAQNKIKA   75 (103)
T ss_dssp             CCCTTCHHHHTT-CCTTCBEEEETTEECSSCCHHHHHHHHHH
T ss_pred             ecCCCChHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            578899888655 99999999999999999999999999873

>d1ky9a1 b.36.1.4 (A:260-353) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.90  E-value=1.1e-10  Score=75.51  Aligned_cols=63  Identities=25%  Similarity=0.384  Sum_probs=47.4

Q ss_pred             CeeCCCCCHHHHHHH-h--hCCeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcC
Q psy1521          26 GTDVRDKSQEEVATI-M--KGGILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLT   91 (175)
Q Consensus        26 g~~v~~~~~~~~~~~-l--~~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~   91 (175)
                      |+.+.+++.+.+..+ +  ..|++|..|.++|||+++| |++||.|++|||+++.+.  .+...+++..
T Consensus         7 Gi~~~~l~~~~~~~~gl~~~~Gv~V~~V~~~spA~~aG-l~~gDvI~~i~g~~v~~~--~~l~~~l~~~   72 (94)
T d1ky9a1           7 GIMGTELNSELAKAMKVDAQRGAFVSQVLPNSSAAKAG-IKAGDVITSLNGKPISSF--AALRAQVGTM   72 (94)
T ss_dssp             CCSCCCTTSHHHHTSCCTTCCSEECCCCTTCSSSTTTT-CCTTCEECBSSSSBCCSS--HHHHHHTTSS
T ss_pred             eEEEEECCHHHHHHcCCCCCCCcEEEECCCChhHHHhC-CCcccEEEEECCEEeCCH--HHHHHHHHhC
Confidence            445555554433222 1  2599999999999999999 999999999999999765  6667777653

>d1v5la_ b.36.1.1 (A:) Alpha-actinin-2 associated LIM protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Alpha-actinin-2 associated LIM protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.90  E-value=9.1e-10  Score=72.22  Aligned_cols=41  Identities=29%  Similarity=0.508  Sum_probs=38.2

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      .|.|+++|++.+ |++||+|++|||+++.+++|.+++.+|+.
T Consensus        35 ~v~~g~~A~~~~-L~~GD~Il~VNg~~v~~~~~~e~v~ll~~   75 (103)
T d1v5la_          35 RITPGSKAAAAN-LCPGDVILAIDGFGTESMTHADAQDRIKA   75 (103)
T ss_dssp             CBCTTSTTGGGT-CCTTCBEEEETTEECSSCCHHHHHHHHTT
T ss_pred             EccCCChHHhCC-CCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            688999998766 99999999999999999999999999985

>d1uita_ b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Discs large 5 protein KIAA0583
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=7.2e-10  Score=74.39  Aligned_cols=41  Identities=27%  Similarity=0.530  Sum_probs=38.8

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      .|.|||+|+++| |++||+|++|||+++.+++|++++.+|+.
T Consensus        48 ~V~~gs~A~~~g-L~~GD~Il~INg~~v~~~~~~~~~~~l~~   88 (117)
T d1uita_          48 KVTVGSIAHQAG-LEYGDQLLEFNGINLRSATEQQARLIIGQ   88 (117)
T ss_dssp             EECTTSHHHHHT-CCTTCEECEETTEETTTCCHHHHHHHTTS
T ss_pred             EEecCChHHhCC-CCCCCEeeeECCcccCCCCHHHHHHHHHC
Confidence            588999999988 99999999999999999999999999985

>d2h3la1 b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Erbin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=1.3e-09  Score=71.43  Aligned_cols=40  Identities=25%  Similarity=0.449  Sum_probs=36.7

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      +|.|+|||++  +|++||+||+|||.++.+++|++|+++|+.
T Consensus        49 ~V~~gs~A~~--~L~~GD~Il~VNg~~v~~~t~~eav~~l~~   88 (103)
T d2h3la1          49 RVQPEGPASK--LLQPGDKIIQANGYSFINIEHGQAVSLLKT   88 (103)
T ss_dssp             EECTTSTTTT--TCCTTCEEEEETTEECSSCCHHHHHHHHHH
T ss_pred             EeCCCChHHh--ccCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            5789999964  599999999999999999999999999984

>d2i6va1 b.36.1.5 (A:219-305) General secretion pathway protein C, EpsC {Vibrio cholerae [TaxId: 666]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: EpsC C-terminal domain-like
domain: General secretion pathway protein C, EpsC
species: Vibrio cholerae [TaxId: 666]

Probab=98.77  E-value=2.8e-09  Score=67.72  Aligned_cols=45  Identities=18%  Similarity=0.085  Sum_probs=39.6

Q ss_pred             CeEEEEecCCCcccccCCcCCCCEEEEECCeecCCCCHHHHHHHHHcC
Q psy1521          44 GILVHDIYPEGAAAKDARLKFGDQILELTGEDFRNITHAKAMAHLRLT   91 (175)
Q Consensus        44 gi~V~~v~~gg~A~~~G~L~~GD~Il~VNG~~l~~~~~~~a~~~lk~~   91 (175)
                      |+.|..+.++++|+++| |++||.|++|||+++.+  ..+...++...
T Consensus        20 G~~v~~v~~~s~~~~aG-l~~GDiI~~ing~~v~~--~~~~~~~~~~~   64 (87)
T d2i6va1          20 GYRVSPGKDPVLFESIG-LQDGDMAVALNGLDLTD--PNVMNTLFQSM   64 (87)
T ss_dssp             EEEEEECSCHHHHHHTT-CCTTCEEEEETTEETTC--HHHHHHHHHTG
T ss_pred             EEEEecCCCCCHHHHCC-CCCCCEEEEECCEEeec--HHHHHHHHHhh
Confidence            78899999999999999 99999999999999965  57777777653

>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tight junction protein ZO-2, Tjp2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.74  E-value=2.1e-09  Score=70.52  Aligned_cols=40  Identities=28%  Similarity=0.475  Sum_probs=36.5

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      +|.|||+|+  ++|+.||+|++|||+++.+++|++++++|+.
T Consensus        45 ~v~~gs~A~--~~L~~GD~Il~INg~~v~~~~~~ev~~ll~~   84 (104)
T d2csja1          45 DVLPGGPAD--GLLQENDRVVMVNGTPMEDVLHSFAVQQLRK   84 (104)
T ss_dssp             EECTTSSHH--HHBCTTCEEEEESSCBCBTCCHHHHHHHHHH
T ss_pred             EECCCChhh--cCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            578999985  4599999999999999999999999999974

>d1ujva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=5.4e-09  Score=67.55  Aligned_cols=39  Identities=26%  Similarity=0.262  Sum_probs=34.5

Q ss_pred             CCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           5 PGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         5 ~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      ...+|+..++|++||+|++|||+++.+++|++++++|+.
T Consensus        38 ~~~~~~~~~~L~~GD~Il~VNg~~v~~~t~~evv~~lk~   76 (96)
T d1ujva_          38 QILDIQGCPGLCEGDLIVEINQQNVQNLSHTEVVDILKD   76 (96)
T ss_dssp             EESCGGGSTTCCSSCEEEEETTEECSSCCHHHHHHHHHH
T ss_pred             eccCcccccCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            345677777799999999999999999999999999984

>d1wh1a_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=6.1e-09  Score=70.41  Aligned_cols=39  Identities=33%  Similarity=0.730  Sum_probs=33.2

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      .|.|||+|+++|+|+.||+|++|||+++.+++  ++..+++
T Consensus        54 ~v~~gg~A~~~g~L~~GD~Il~INg~~v~~~~--~~~~~l~   92 (124)
T d1wh1a_          54 EIDPNSIAAKDGRIREGDRIIQINGIEVQNRE--EAVALLT   92 (124)
T ss_dssp             EECSSSHHHHTCCCCTTCEEEEESSCBCCSHH--HHHHHHT
T ss_pred             EECCCChhhhhcccCCCCEEEEECCEECCCHH--HHHHHHh
Confidence            58899999999999999999999999998754  4555554

>d1ky9b2 b.36.1.4 (B:359-446) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.46  E-value=1.2e-07  Score=59.95  Aligned_cols=38  Identities=29%  Similarity=0.436  Sum_probs=33.2

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMK   42 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   42 (175)
                      +|.|+|||+++| |++||.|++|||+++.++  +++.++++
T Consensus        31 ~V~~~spA~~aG-l~~GDvI~~ing~~v~~~--~~~~~~l~   68 (88)
T d1ky9b2          31 NVKTGTPAAQIG-LKKGDVIIGANQQAVKNI--AELRKVLD   68 (88)
T ss_dssp             CCCSSCTTGGGT-CCSSCEEEEETTEECSSH--HHHHHHTT
T ss_pred             EECCCCHHHHcC-CCCCcEEEEECCEEcCCH--HHHHHHHH
Confidence            688999999999 999999999999999864  56666665

>d2z9ia1 b.36.1.4 (A:227-314) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease PepD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.38  E-value=1.1e-07  Score=60.19  Aligned_cols=32  Identities=31%  Similarity=0.488  Sum_probs=29.2

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCH
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQ   34 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~   34 (175)
                      +|.|+|||+++| |++||+|++|||.++.++.+
T Consensus        22 ~V~~~spA~~aG-l~~GD~I~~ing~~i~~~~~   53 (88)
T d2z9ia1          22 EVVAGGAAANAG-VPKGVVVTKVDDRPINSADA   53 (88)
T ss_dssp             EECTTSTTGGGT-CCTTCEEEEETTEECCSHHH
T ss_pred             EECCCCHHHHcC-CCCCCEEEEeCCCcCCcHHH
Confidence            588999999999 99999999999999987643

>d1k32a1 b.36.1.3 (A:763-853) Tricorn protease {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Tricorn protease
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.21  E-value=5.1e-07  Score=57.36  Aligned_cols=35  Identities=20%  Similarity=0.258  Sum_probs=29.4

Q ss_pred             CChhhhcCCC-CCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           6 GGIAATDGRL-LKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         6 ~~~A~~~G~L-~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      +|||+++| | |+||+|++|||+++.++.  ++.++|++
T Consensus        30 ~sPa~~aG-l~k~GD~I~~IdG~~v~~~~--~~~~~l~g   65 (91)
T d1k32a1          30 KSPIFEYG-IDPTGYLIEDIDGETVGAGS--NIYRVLSE   65 (91)
T ss_dssp             BCGGGGGT-CCCTTCEEEEETTEECBTTB--CHHHHHHT
T ss_pred             CChhHhcC-CCCCCCEEEEECCEeecCcc--eeEEEEec
Confidence            49999999 7 899999999999999875  45666653

>d1lcya1 b.36.1.4 (A:226-325) Mitochondrial serine protease HtrA2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Mitochondrial serine protease HtrA2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=2.5e-07  Score=59.67  Aligned_cols=39  Identities=26%  Similarity=0.433  Sum_probs=33.1

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHhhC
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIMKG   43 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~   43 (175)
                      .|.|+|||+++| |++||.|++|||.++.++  +++.+.++.
T Consensus        37 ~V~~~spA~~aG-l~~GDiI~~ing~~V~s~--~dl~~~l~~   75 (100)
T d1lcya1          37 KVILGSPAHRAG-LRPGDVILAIGEQMVQNA--EDVYEAVRT   75 (100)
T ss_dssp             EECTTSHHHHHT-CCTTCEEEEETTEECCSH--HHHHHHHTT
T ss_pred             EECCCchHhhcC-CCCCcEEEEECCEEcCCH--HHHHHHhcC
Confidence            578999999999 999999999999999865  456666653

>d1ky9a1 b.36.1.4 (A:260-353) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.13  E-value=2.8e-07  Score=58.88  Aligned_cols=32  Identities=28%  Similarity=0.500  Sum_probs=29.7

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCH
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQ   34 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~   34 (175)
                      .|.|+|||+++| |+.||.|++|||.++.++.+
T Consensus        33 ~V~~~spA~~aG-l~~gDvI~~i~g~~v~~~~~   64 (94)
T d1ky9a1          33 QVLPNSSAAKAG-IKAGDVITSLNGKPISSFAA   64 (94)
T ss_dssp             CCTTCSSSTTTT-CCTTCEECBSSSSBCCSSHH
T ss_pred             ECCCChhHHHhC-CCcccEEEEECCEEeCCHHH
Confidence            688999999999 99999999999999998754

>d1sota1 b.36.1.4 (A:255-353) Stress sensor protease DegS, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Stress sensor protease DegS, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.09  E-value=3.8e-07  Score=58.85  Aligned_cols=32  Identities=31%  Similarity=0.416  Sum_probs=29.8

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCH
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQ   34 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~   34 (175)
                      +|.|+|||+++| |++||.|++|||.++.++.+
T Consensus        32 ~V~~~spA~~aG-l~~GDiI~~ing~~v~~~~~   63 (99)
T d1sota1          32 EVSPDGPAANAG-IQVNDLIISVDNKPAISALE   63 (99)
T ss_dssp             CCCSSSTTTSSS-CCTTCEECBSSSSBCCCSHH
T ss_pred             EecCCCCHHHcC-CCcceEEEEECCEecccHHH
Confidence            688999999999 99999999999999998765

>d2hgaa1 b.36.1.6 (A:23-125) Uncharacterized protein MTH1368 {Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: MTH1368 C-terminal domain-like
domain: Uncharacterized protein MTH1368
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.95  E-value=1.9e-06  Score=55.87  Aligned_cols=36  Identities=25%  Similarity=0.349  Sum_probs=29.6

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHh
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQEEVATIM   41 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~~~~~~~l   41 (175)
                      .|.|++||++ + |++||+|++|||..+.++.  +....+
T Consensus         9 ~V~~~sPA~~-~-L~~GD~I~~ing~~v~~~~--~l~~~i   44 (103)
T d2hgaa1           9 SVVPGSPASK-V-LTPGLVIESINGMPTSNLT--TYSAAL   44 (103)
T ss_dssp             EECSSSGGGG-T-SCTTCEEEEETTEECSSHH--HHHHHH
T ss_pred             EECCCChHHh-c-CCCCCEEEEECCEEcCCHH--HHHHHH
Confidence            5889999975 6 9999999999999998764  454444

>d2i6va1 b.36.1.5 (A:219-305) General secretion pathway protein C, EpsC {Vibrio cholerae [TaxId: 666]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: EpsC C-terminal domain-like
domain: General secretion pathway protein C, EpsC
species: Vibrio cholerae [TaxId: 666]

Probab=97.81  E-value=3.6e-06  Score=52.78  Aligned_cols=32  Identities=22%  Similarity=0.328  Sum_probs=28.5

Q ss_pred             ccCCCChhhhcCCCCCCCEEEEECCeeCCCCCH
Q psy1521           2 RAVPGGIAATDGRLLKGDQIMSVDGTDVRDKSQ   34 (175)
Q Consensus         2 ~v~~~~~A~~~G~L~~GD~Il~Vng~~v~~~~~   34 (175)
                      .+.++|+|+++| |++||.|++|||.++.++.+
T Consensus        25 ~v~~~s~~~~aG-l~~GDiI~~ing~~v~~~~~   56 (87)
T d2i6va1          25 PGKDPVLFESIG-LQDGDMAVALNGLDLTDPNV   56 (87)
T ss_dssp             ECSCHHHHHHTT-CCTTCEEEEETTEETTCHHH
T ss_pred             cCCCCCHHHHCC-CCCCCEEEEECCEEeecHHH
Confidence            467889999999 99999999999999997654