Psyllid ID: psy15226
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 362 | 2.2.26 [Sep-21-2011] | |||||||
| B0WC46 | 517 | Facilitated trehalose tra | N/A | N/A | 0.823 | 0.576 | 0.280 | 1e-31 | |
| A5LGM7 | 504 | Facilitated trehalose tra | N/A | N/A | 0.825 | 0.593 | 0.281 | 3e-31 | |
| Q7PIR5 | 793 | Facilitated trehalose tra | no | N/A | 0.820 | 0.374 | 0.279 | 2e-30 | |
| A9ZSY2 | 502 | Facilitated trehalose tra | N/A | N/A | 0.795 | 0.573 | 0.280 | 3e-30 | |
| Q17NV8 | 806 | Facilitated trehalose tra | N/A | N/A | 0.823 | 0.369 | 0.264 | 2e-29 | |
| B4KR05 | 863 | Facilitated trehalose tra | N/A | N/A | 0.823 | 0.345 | 0.273 | 9e-29 | |
| B3NSE1 | 856 | Facilitated trehalose tra | N/A | N/A | 0.823 | 0.348 | 0.277 | 1e-28 | |
| B4LPX5 | 911 | Facilitated trehalose tra | N/A | N/A | 0.823 | 0.327 | 0.273 | 1e-28 | |
| B3MG58 | 866 | Facilitated trehalose tra | N/A | N/A | 0.823 | 0.344 | 0.267 | 8e-28 | |
| A9ZSY3 | 505 | Facilitated trehalose tra | N/A | N/A | 0.848 | 0.607 | 0.259 | 1e-27 |
| >sp|B0WC46|TRET1_CULQU Facilitated trehalose transporter Tret1 OS=Culex quinquefasciatus GN=Tret1 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 137 bits (345), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 88/314 (28%), Positives = 165/314 (52%), Gaps = 16/314 (5%)
Query: 2 VGTLAILLIGNHVSYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYR 61
+G L + GN++ ++ L + LPV F IL +PETP ++ ++ + K+L+W R
Sbjct: 197 IGILLCFVAGNYMDWSELAFLGATLPVPFLILMFLIPETPRWYVSRGRDDRARKALQWLR 256
Query: 62 GNKKDVMEEMNSIMDKTQ--EDLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSM 119
G K DV E+ I+ Q E S++ L+LL K+N + + + FQ+L GI ++
Sbjct: 257 GKKADVDPELKGIIKSHQDAERHASQSAMLDLL-KKTNLKPLLISLGLMFFQQLSGINAV 315
Query: 120 ITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLT 179
I Y+ + + + C ++ ++ F++ F+ L+D LGRK L + + + ++T
Sbjct: 316 IFYTVQIFQD-AGSTIDENLCTIIVGVVNFIATFIATLLIDRLGRKML-LYISDIAMIIT 373
Query: 180 FST--GLFYLYQ--GELPNFQYIPYITTLLYAASY-YGIGCLPNILVSELFPINVRCQAS 234
T G FY+ G++ + ++P + +++ + G G +P +++ E+ P +R
Sbjct: 374 LMTLGGFFYVKNNGGDVSHIGWLPLASFVIFVLGFSLGFGPIPWLMMGEILPGKIR---G 430
Query: 235 SCASVALAFG---SFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFNYFYLMETKQKTL 291
S ASVA AF +F+ TK I S+G H F+++ SV +VF Y+ ET+ K+L
Sbjct: 431 SAASVATAFNWSCTFVVTKTFADIIASIGTHGAFWMFGSVCVVGLVFVIMYVPETQGKSL 490
Query: 292 AEIQESIMNSHKQL 305
+I+ + +++
Sbjct: 491 EDIERKMCGRVRRM 504
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High-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Culex quinquefasciatus (taxid: 7176) |
| >sp|A5LGM7|TRET1_POLVA Facilitated trehalose transporter Tret1 OS=Polypedilum vanderplanki GN=Tret1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 135 bits (341), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 88/313 (28%), Positives = 159/313 (50%), Gaps = 14/313 (4%)
Query: 2 VGTLAILLIGNHVSYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYR 61
+G L + G +V+++ L SILP+ F +L +PETP + + ++ K+L+W R
Sbjct: 184 IGILICFVAGKYVNWSGLAFIGSILPIPFMVLTLLIPETPRWFVTRGREERARKALQWLR 243
Query: 62 GNKKDVMEEMNSIMDK--TQEDLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSM 119
G K DV E+ I+ E S+ +L+ +SN + + + FQ+L GI ++
Sbjct: 244 GKKADVEPELKGIVKSHCEAERHASQNAIFDLM-KRSNLKPLLIALGLMFFQQLSGINAV 302
Query: 120 ITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFS--AALGCL 177
I Y+ ++ K + + C ++ ++ F + F L+D LGRK L S A + L
Sbjct: 303 IFYTVSIF-KDAGSTIDENLCTIIVGVVNFGATFFATVLIDRLGRKILLYISEVAMVITL 361
Query: 178 LTFSTGLFYLYQG-ELPNFQYIPYITTLLYAASY-YGIGCLPNILVSELFPINVRCQASS 235
LT T +Y G ++ N ++P + ++Y + G+G +P +++ E+ P +R S
Sbjct: 362 LTLGTFFYYKNSGNDVSNIGWLPLASFVIYVIGFSSGVGPIPWLMLGEILPGKIR---GS 418
Query: 236 CASVALAFG---SFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFNYFYLMETKQKTLA 292
ASVA F +FI TK I ++G H F+ + + + F F++ ET+ K+L
Sbjct: 419 AASVATGFNWTCTFIVTKTFADIVAAIGNHGAFWFFGVICLIGLFFVIFFVPETQGKSLE 478
Query: 293 EIQESIMNSHKQL 305
EI+ +M +++
Sbjct: 479 EIERKMMGRVRRM 491
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High-capacity facilitative transporter for trehalose, required to induce anhydrobiosis. Anhydrobiotic larvae can survive almost complete dehydration. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Polypedilum vanderplanki (taxid: 319348) |
| >sp|Q7PIR5|TRET1_ANOGA Facilitated trehalose transporter Tret1 OS=Anopheles gambiae GN=Tret1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 133 bits (335), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 88/315 (27%), Positives = 164/315 (52%), Gaps = 18/315 (5%)
Query: 2 VGTLAILLIGNHVSYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYR 61
+G L + G ++ ++ L + LP+ F +L +PETP ++ ++N + K+L+W R
Sbjct: 473 IGILLCFVAGKYLDWSGLAFLGAALPIPFLLLMFLIPETPRWYVSRNREDRARKALQWLR 532
Query: 62 GNKKDVMEEMNSIMDKTQEDLK---SKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITS 118
G K DV E+ I K+ +D + S + L+LL NK+N + + + FQ+L GI +
Sbjct: 533 GRKADVEPELKGI-SKSHQDAERHASSSAMLDLL-NKANLKPLLISLGLMFFQQLSGINA 590
Query: 119 MITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFS--AALGC 176
+I Y+ + + C ++ ++ F++ F+ L+D LGRK L S A +
Sbjct: 591 VIFYTVQIFQSA-GSTIDEKLCTIIVGVVNFIATFIATVLIDRLGRKILLYISDVAMIIT 649
Query: 177 LLTFSTGLFYLYQG--ELPNFQYIPYITTLLYAASY-YGIGCLPNILVSELFPINVRCQA 233
L+T T FY+ ++ ++P +++ + G G +P +++ E+ P +R
Sbjct: 650 LMTLGT-FFYMKNNGDDVSEIGWLPLAAFVVFVVGFSLGFGPIPWLMMGEILPGKIR--- 705
Query: 234 SSCASVALAFG---SFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFNYFYLMETKQKT 290
S ASVA AF +F+ TK IT S+G H F+++ S+ ++F Y+ ET+ K+
Sbjct: 706 GSAASVATAFNWSCTFVVTKTFADITASIGNHGAFWMFGSICIVGLLFVIVYVPETQGKS 765
Query: 291 LAEIQESIMNSHKQL 305
L +I+ +M +++
Sbjct: 766 LEDIERKMMGRVRRM 780
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High-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Anopheles gambiae (taxid: 7165) |
| >sp|A9ZSY2|TRET1_APILI Facilitated trehalose transporter Tret1 OS=Apis mellifera ligustica GN=Tret1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 132 bits (333), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 85/303 (28%), Positives = 165/303 (54%), Gaps = 15/303 (4%)
Query: 3 GTLAILLIGNHVSYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRG 62
G L G ++++ +L + + +P+IF IL +PETP ++ +K +K+ KSL+W RG
Sbjct: 184 GILMCFTAGMYLAWRNLALLGACIPIIFLILMFLIPETPRWYISKGKIKEARKSLQWLRG 243
Query: 63 NKKDVMEEMNSI--MDKTQEDLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMI 120
D+ EE++SI M E + ++ +EL K++ + + + FQ+ GI ++I
Sbjct: 244 KTADISEELDSIQKMHIESERIATEGALIELF-RKNHIKPVFISLGLMFFQQFSGINAVI 302
Query: 121 TYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTF 180
Y+ + K + + ++ ++ F+S F+ A ++D LGRK L S+ L C+ F
Sbjct: 303 FYTVQIF-KDSGSTVDENLSTIIVGLVNFISTFVAAMIIDRLGRKMLLYISSILMCITLF 361
Query: 181 STGLFYLYQGELPN---FQYIPYITTLLYAASY-YGIGCLPNILVSELFPINVRCQASSC 236
+ G F+ Y EL + F +IP ++ ++Y + +G G +P +++ E+ P+ +R A
Sbjct: 362 TFGTFF-YVKELMDVTAFGWIPLMSLIVYVIGFSFGFGPIPWLMMGEILPVKIRGTA--- 417
Query: 237 ASVALAFG---SFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFNYFYLMETKQKTLAE 293
ASVA AF +F+ TK + + +G + F+++ ++ + +F + ET+ ++L E
Sbjct: 418 ASVATAFNWSCTFVVTKTYEDLVLHIGPYGTFWLFGTLVAVAFIFVIICVPETRGRSLEE 477
Query: 294 IQE 296
I+
Sbjct: 478 IER 480
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Moderate-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Apis mellifera ligustica (taxid: 7469) |
| >sp|Q17NV8|TRET1_AEDAE Facilitated trehalose transporter Tret1 OS=Aedes aegypti GN=Tret1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 130 bits (326), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 83/314 (26%), Positives = 163/314 (51%), Gaps = 16/314 (5%)
Query: 2 VGTLAILLIGNHVSYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYR 61
+G L + G ++ ++ L + LP+ F +L +PETP ++ ++ + K+L+W R
Sbjct: 486 IGILLCFVAGKYMDWSGLAFLGAALPIPFLLLMFLIPETPRWYVSRGRDDRARKALQWLR 545
Query: 62 GNKKDVMEEMNSIMDKTQEDLK--SKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSM 119
G K DV E+ I+ Q+ + S++ L+L+ K+N + + + FQ+L GI ++
Sbjct: 546 GKKADVDPELKGIIKSHQDAERHASQSAMLDLM-KKANLKPLLISLGLMFFQQLSGINAV 604
Query: 120 ITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLT 179
I Y+ + + + C ++ ++ F++ F+ L+D LGRK L + + + ++T
Sbjct: 605 IFYTVQIFQDA-GSTIDENLCTIIVGVVNFIATFIATMLIDRLGRKML-LYISDVAMIIT 662
Query: 180 FST--GLFYLYQG--ELPNFQYIPYITTLLYAASY-YGIGCLPNILVSELFPINVRCQAS 234
T G FY+ ++ ++P ++Y + G G +P +++ E+ P +R
Sbjct: 663 LMTLGGFFYVKNSGQDVSQVGWLPLAAFVIYVLGFSLGFGPIPWLMMGEILPGKIR---G 719
Query: 235 SCASVALAFG---SFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFNYFYLMETKQKTL 291
S ASVA AF +FI TK I ++G H F+++ S+ + F FY+ ET+ K+L
Sbjct: 720 SAASVATAFNWSCTFIVTKTFADIINAIGTHGTFWMFGSICVIGLAFVIFYVPETQGKSL 779
Query: 292 AEIQESIMNSHKQL 305
+I+ +M +++
Sbjct: 780 EDIERKMMGRVRRM 793
|
High-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Aedes aegypti (taxid: 7159) |
| >sp|B4KR05|TRET1_DROMO Facilitated trehalose transporter Tret1 OS=Drosophila mojavensis GN=Tret1 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 127 bits (320), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 86/314 (27%), Positives = 159/314 (50%), Gaps = 16/314 (5%)
Query: 2 VGTLAILLIGNHVSYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYR 61
+G L + G ++ ++ L LPV F IL +PETP ++ ++ ++ K+L W R
Sbjct: 543 IGILLCFVAGTYMDWSMLAFLGGTLPVPFLILMFLIPETPRWYVSRGREERARKALVWLR 602
Query: 62 GNKKDVMEEMNSIMDKTQEDLK---SKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITS 118
G + DV E+ +M ++Q D ++ LELL +SN + ++ + FQ+L GI +
Sbjct: 603 GKEADVEPELKGLM-RSQADADRQATQNTMLELL-KRSNLKPLSISLGLMFFQQLSGINA 660
Query: 119 MITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLL 178
+I Y+ + + G + C ++ ++ F++ F+ L+D GRK L S L
Sbjct: 661 VIFYTVQIFQDAGSTIDG-NVCTIIVGVVNFMATFIATVLIDRAGRKILLYVSNVAMILT 719
Query: 179 TFSTGLFYLYQG---ELPNFQYIPYITTLLYAASY-YGIGCLPNILVSELFPINVRCQAS 234
F G F+ + + N ++P ++Y + G G +P +++ E+ P +R
Sbjct: 720 LFVLGGFFYCKSTGMDTSNVGWLPLSCFVVYILGFSLGFGPIPWLMMGEILPAKIR---G 776
Query: 235 SCASVALAFG---SFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFNYFYLMETKQKTL 291
S ASVA AF +F+ TK + +G H F+++ ++ F + F FY+ ET+ KTL
Sbjct: 777 SAASVATAFNWSCTFVVTKSFQDMIDVMGAHGAFWMFGAICFVGLFFVIFYVPETQGKTL 836
Query: 292 AEIQESIMNSHKQL 305
+I+ +M +++
Sbjct: 837 EDIERKMMGRVRRM 850
|
Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Drosophila mojavensis (taxid: 7230) |
| >sp|B3NSE1|TRET1_DROER Facilitated trehalose transporter Tret1 OS=Drosophila erecta GN=Tret1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 127 bits (319), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 87/314 (27%), Positives = 161/314 (51%), Gaps = 16/314 (5%)
Query: 2 VGTLAILLIGNHVSYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYR 61
+G L + G+ ++++ L + LPV F IL +PETP + ++ ++ K+L W R
Sbjct: 536 IGILLCFVAGSFMNWSMLAFLGAALPVPFLILMFLIPETPRWFVSRGREERARKALSWLR 595
Query: 62 GNKKDVMEEMNSIMDKTQEDLK---SKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITS 118
G + DV E+ +M ++Q D ++ LELL ++N + ++ + FQ+L GI +
Sbjct: 596 GKEADVEPELKGLM-RSQADADRQATQNTMLELL-KRNNLKPLSISLGLMFFQQLSGINA 653
Query: 119 MITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLL 178
+I Y+ + + G + C ++ ++ FL+ F+ L+D GRK L S L
Sbjct: 654 VIFYTVQIFKDAGSTIDG-NICTIIVGVVNFLATFIGIVLIDRAGRKILLYVSNIAMILT 712
Query: 179 TFSTGLFYLYQGELP---NFQYIPYITTLLYAASY-YGIGCLPNILVSELFPINVRCQAS 234
F G F+ + P N ++P ++Y + G G +P +++ E+ P +R
Sbjct: 713 LFVLGGFFYCKAHGPDVSNLGWLPLTCFVIYILGFSLGFGPIPWLMMGEILPAKIR---G 769
Query: 235 SCASVALAFG---SFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFNYFYLMETKQKTL 291
S ASVA AF +F+ TK +T ++G H F+++ ++ F + F Y+ ET+ KTL
Sbjct: 770 SAASVATAFNWSCTFVVTKTFQDLTVAMGAHGAFWLFGAICFVGLFFVIIYVPETQGKTL 829
Query: 292 AEIQESIMNSHKQL 305
+I+ +M +++
Sbjct: 830 EDIERKMMGRVRRM 843
|
Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Drosophila erecta (taxid: 7220) |
| >sp|B4LPX5|TRET1_DROVI Facilitated trehalose transporter Tret1 OS=Drosophila virilis GN=Tret1 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 127 bits (319), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 86/314 (27%), Positives = 160/314 (50%), Gaps = 16/314 (5%)
Query: 2 VGTLAILLIGNHVSYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYR 61
+G L + G ++ ++ L + LPV F IL +PETP ++ ++ ++ K+L W R
Sbjct: 591 IGILLCFVAGTYMDWSMLAFLGASLPVPFLILMFLIPETPRWYVSRGREERARKALVWLR 650
Query: 62 GNKKDVMEEMNSIMDKTQEDLK---SKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITS 118
G + DV E+ +M ++Q D ++ LELL +SN + ++ + FQ+L GI +
Sbjct: 651 GKEADVEPELKGLM-RSQADADRQATQNKMLELL-KRSNLKPLSISLGLMFFQQLSGINA 708
Query: 119 MITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLL 178
+I Y+ + + G + C ++ ++ F + F+ L+D GRK L S + L
Sbjct: 709 VIFYTVQIFQDAGSTIDG-NVCTIIVGVVNFAATFIATILIDRAGRKVLLYVSNVMMVLT 767
Query: 179 TFSTGLFYLYQG---ELPNFQYIPYITTLLYAASY-YGIGCLPNILVSELFPINVRCQAS 234
F G F+ + + N ++P ++Y + G G +P +++ E+ P +R
Sbjct: 768 LFVLGGFFYCKSSGMDTSNVGWLPLSCFVIYILGFSLGFGPIPWLMMGEILPAKIR---G 824
Query: 235 SCASVALAFG---SFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFNYFYLMETKQKTL 291
S ASVA AF +F+ TK + +G H F+++ ++ F + F FY+ ET+ KTL
Sbjct: 825 SAASVATAFNWSCTFVVTKSFQDMIDFMGAHGAFWMFGAICFIGLFFVIFYVPETQGKTL 884
Query: 292 AEIQESIMNSHKQL 305
+I+ +M +++
Sbjct: 885 EDIERKMMGRVRRM 898
|
Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Drosophila virilis (taxid: 7244) |
| >sp|B3MG58|TRET1_DROAN Facilitated trehalose transporter Tret1 OS=Drosophila ananassae GN=Tret1 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 124 bits (312), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 84/314 (26%), Positives = 159/314 (50%), Gaps = 16/314 (5%)
Query: 2 VGTLAILLIGNHVSYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYR 61
+G L + G ++ ++ L + LPV F +L +PETP + ++ ++ K+L W R
Sbjct: 546 IGILLCFVAGTYMDWSMLAFLGAALPVPFLVLMFLIPETPRWFVSRGREERARKALSWLR 605
Query: 62 GNKKDVMEEMNSIMDKTQEDLK---SKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITS 118
G + DV E+ +M ++Q D ++ LELL +SN + ++ + FQ+L GI +
Sbjct: 606 GKEADVEPELKGLM-RSQADADRQGTQNTMLELL-KRSNFKPLSISLGLMFFQQLSGINA 663
Query: 119 MITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLL 178
+I Y+ ++ + G + C ++ ++ FL+ F+ L+D GRK L S +
Sbjct: 664 VIFYTVSIFKDAGSTIDG-NVCTIIVGVVNFLATFIATLLIDRAGRKILLYVSNIAMIIT 722
Query: 179 TFSTGLFYLYQGELPN---FQYIPYITTLLYAASY-YGIGCLPNILVSELFPINVRCQAS 234
F G F+ + P+ ++P ++Y + G G +P +++ E+ P +R
Sbjct: 723 LFVLGGFFYCKAHGPDVSHLGWLPLSCFVIYILGFSLGFGPIPWLMMGEILPAKIR---G 779
Query: 235 SCASVALAFG---SFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFNYFYLMETKQKTL 291
S ASVA AF +F+ TK + +G H F+++ ++ F + F Y+ ET+ KTL
Sbjct: 780 SAASVATAFNWTCTFVVTKTFQDMIDVMGAHGAFWLFGAICFIGLFFVILYVPETQGKTL 839
Query: 292 AEIQESIMNSHKQL 305
+I+ +M +++
Sbjct: 840 EDIERKMMGRVRRM 853
|
Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Drosophila ananassae (taxid: 7217) |
| >sp|A9ZSY3|TRET1_BOMMO Facilitated trehalose transporter Tret1 OS=Bombyx mori GN=Tret1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 124 bits (312), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 82/316 (25%), Positives = 165/316 (52%), Gaps = 9/316 (2%)
Query: 3 GTLAILLIGNHVSYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRG 62
G L L+G+++ +++L + +PV FF+L PETP ++ +K +++ KSL+W RG
Sbjct: 189 GILLAFLVGSYLDWSNLAFFGAAIPVPFFLLMILTPETPRWYVSKARVQEARKSLRWLRG 248
Query: 63 NKKDVMEEMNSI-MDKTQEDLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMIT 121
++ +EM + + +T+ D + +L + K A + + LFQ+L GI ++I
Sbjct: 249 KNVNIEKEMRDLTISQTESDRTGGNAFKQLFS-KRYLPAVMISLGLMLFQQLTGINAVIF 307
Query: 122 YSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFS--AALGCLLT 179
Y++++ ++ + + ++ ++ F+S F+ L+D LGRK L S A + LL
Sbjct: 308 YAASIF-QMSGSSVDENLASIIIGVVNFISTFIATMLIDRLGRKVLLYISSVAMITTLLA 366
Query: 180 FSTGLFYLYQG--ELPNFQYIPYITTLLYAASY-YGIGCLPNILVSELFPINVRCQASSC 236
FYL Q ++ + ++P ++Y + G G +P +++ E+ P +R A+S
Sbjct: 367 LGA-YFYLKQNHIDVTAYGWLPLACLVIYVLGFSIGFGPIPWLMLGEILPSKIRGTAASL 425
Query: 237 ASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFNYFYLMETKQKTLAEIQE 296
A+ +FI TK I ++ H ++++ + ++F F++ ETK K+L EI+
Sbjct: 426 ATGFNWTCTFIVTKTFQNIIDAIYMHGTLWLFAVICIGGLLFVIFFVPETKGKSLEEIEM 485
Query: 297 SIMNSHKQLRREKTSP 312
+ + +++R P
Sbjct: 486 KLTSGSRRVRNISKQP 501
|
High-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Bombyx mori (taxid: 7091) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 362 | ||||||
| 291461587 | 450 | sugar transporter 14 [Nilaparvata lugens | 0.814 | 0.655 | 0.35 | 5e-51 | |
| 193610443 | 466 | PREDICTED: facilitated trehalose transpo | 0.834 | 0.648 | 0.334 | 1e-46 | |
| 328697684 | 492 | PREDICTED: facilitated trehalose transpo | 0.842 | 0.619 | 0.330 | 2e-43 | |
| 328723330 | 466 | PREDICTED: facilitated trehalose transpo | 0.834 | 0.648 | 0.321 | 4e-43 | |
| 328723119 | 431 | PREDICTED: facilitated trehalose transpo | 0.806 | 0.677 | 0.355 | 8e-40 | |
| 328723117 | 451 | PREDICTED: facilitated trehalose transpo | 0.806 | 0.647 | 0.355 | 1e-39 | |
| 328703922 | 466 | PREDICTED: facilitated trehalose transpo | 0.806 | 0.626 | 0.315 | 5e-38 | |
| 328699079 | 480 | PREDICTED: facilitated trehalose transpo | 0.848 | 0.639 | 0.322 | 4e-35 | |
| 195154677 | 445 | GL16864 [Drosophila persimilis] gi|19411 | 0.820 | 0.667 | 0.300 | 1e-31 | |
| 198458593 | 445 | GA24319 [Drosophila pseudoobscura pseudo | 0.820 | 0.667 | 0.297 | 5e-31 |
| >gi|291461587|dbj|BAI83428.1| sugar transporter 14 [Nilaparvata lugens] | Back alignment and taxonomy information |
|---|
Score = 207 bits (528), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 105/300 (35%), Positives = 190/300 (63%), Gaps = 5/300 (1%)
Query: 3 GTLAILLIGNHVSYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYR- 61
G+L + ++G VSY LN +I P+IFF+ F ++PE+P+ +N +++ KSL+W R
Sbjct: 148 GSLLMFIVGPLVSYQWLNTIGAIFPIIFFMTFLWIPESPYGCLMRNKVEEARKSLQWLRE 207
Query: 62 -GNKKDVMEEMNSIMDKTQEDLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMI 120
++ + +E+ + + +E++K+K +++L+ SNR+A T+VM +S FQRL GI++++
Sbjct: 208 GADQLTIEKELEQMKENVEEEMKTKGTFVDLVAIPSNRKATTIVMVSSAFQRLCGISAVL 267
Query: 121 TYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALG-CLLT 179
+SST LP + +F Q I+VF I++ + NFL PL+D LGRKPL F++++G + T
Sbjct: 268 AFSSTTLPNVGFQFFHVSQVIVVFGIVLTIGNFLATPLVDHLGRKPL-LFASSIGLAIST 326
Query: 180 FSTGLFYLYQGELPNFQYIPYITTLLYAASY-YGIGCLPNILVSELFPINVRCQASSCAS 238
++G +YL + + ++PY+ + + + G+G +P+ L+SELFP NV+ +A++ +S
Sbjct: 327 ATSGFYYLLRKDPEQAAWLPYMALVCFGIFHSIGLGVIPSTLLSELFPANVKSRAAAVSS 386
Query: 239 VALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFNYFYLMETKQKTLAEIQESI 298
+ A SF+T K + + S+G H +FF +S +FN ++ ETK K+ +IQ+ +
Sbjct: 387 IVFAAASFVTNKMYHPVQHSIGTHAMFFFFSMNAVIFTIFNALFIFETKGKSFPDIQKRL 446
|
Source: Nilaparvata lugens Species: Nilaparvata lugens Genus: Nilaparvata Family: Delphacidae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|193610443|ref|XP_001952640.1| PREDICTED: facilitated trehalose transporter Tret1-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 107/320 (33%), Positives = 188/320 (58%), Gaps = 18/320 (5%)
Query: 3 GTLAILLIGNHVSYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRG 62
G L +IG VSY +LN+ +++PV+FF +VPE+P++ +N + L+W+RG
Sbjct: 150 GLLMESIIGPLVSYRTLNVVSAVVPVLFFAAVVWVPESPYYLLKRNRRPQAAVCLQWFRG 209
Query: 63 NKKDVMEEMNSIMDKTQEDLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITY 122
DV+ E++ + ++++++++ + EL ++ + RA ++V+AA QR GGI+ ++ Y
Sbjct: 210 GG-DVVHELDQMEVNVRKEMENRSTFQELFASRKDMRALSIVVAACAAQRGGGISCILAY 268
Query: 123 SSTLLPKLDNAYFGP----DQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLL 178
SS +LP DN GP Q I++F + M + NF+ L+D +GRKPL S A +L
Sbjct: 269 SSLILP--DN---GPLLNKHQSIMLFGVTMVVVNFVAVALVDRVGRKPLLLLSEAGMAVL 323
Query: 179 TFSTGLF-YLYQGELPNFQ-----YIPYITTLLYAASYY-GIGCLPNILVSELFPINVRC 231
T + +F Y +G+ ++ ++PY+ +A + G+G +P + + E+FP+N+R
Sbjct: 324 TLTFAVFFYCSRGDGSDWASRELAWLPYLCHWSFAVMFATGVGFVPVVFLGEMFPVNIRS 383
Query: 232 QASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFNYFYLMETKQKTL 291
S+ AS+ LAF SF+T K + ++ G H +F +++ V+ + Y Y +ETK KTL
Sbjct: 384 HCSAIASITLAFCSFVTNKMFLFVSDRYGVHAMFLLFTVVNLVGTFYTYKYAIETKGKTL 443
Query: 292 AEIQESIMNSHKQLRREKTS 311
EIQE + ++ RR KT+
Sbjct: 444 QEIQEQLQDTVGP-RRGKTN 462
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328697684|ref|XP_003240408.1| PREDICTED: facilitated trehalose transporter Tret1-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 108/327 (33%), Positives = 187/327 (57%), Gaps = 22/327 (6%)
Query: 3 GTLAILLIGNHVSYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRG 62
G L +++G +VSY++LN +++PV+FF F +VPE+P++ L + + L+WYRG
Sbjct: 151 GVLFEVIVGPYVSYHTLNATSAVVPVLFFAAFLWVPESPYYLLKVGRLAEATRCLRWYRG 210
Query: 63 ------------NKKDVMEEMNSIMDKTQEDLKSKTGYLELLTNKSNRRAFTLVMAASLF 110
V E+ + ++D+++ + EL N++N RA +V+ A +
Sbjct: 211 CDGESGSGDDDDGDATVAAELRLMEVNVRKDMENGSALSELFANRNNFRALAVVVVACMG 270
Query: 111 QRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCF 170
QR GGI+S+ YS+ +LP+ + G + I+ F +++ + NF+ L+D +GRKPL
Sbjct: 271 QRAGGISSLTAYSALILPE-PSPIMGKFEFIIAFAVVLVVVNFVGLALVDRVGRKPLLIV 329
Query: 171 SAALGCLLTFSTGLFYL----YQGELPNFQYIPYITTLLYAASY-YGIGCLPNILVSELF 225
S A L+TF G++Y Y G ++++PY+ +AA++ GIG +P + + E+F
Sbjct: 330 SEAGLGLVTFVFGVYYFAAEHYPGAAAAYRWLPYVCHTTFAATFSIGIGFIPVVFLGEMF 389
Query: 226 PINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFNYFYLME 285
P+NVR + S+ ASV LAF SF++ K ++++ G + +F+ +S+V+F F++ Y +E
Sbjct: 390 PVNVRSRCSAFASVTLAFFSFVSNKTFLVVSHKYGYYTMFWAFSAVNFACAYFSHRYAVE 449
Query: 286 TKQKTLAEIQE----SIMNSHKQLRRE 308
T KT EIQE S+ N RR
Sbjct: 450 TTGKTFVEIQEILDDSVRNGPGTRRRN 476
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328723330|ref|XP_001952643.2| PREDICTED: facilitated trehalose transporter Tret1-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 181 bits (459), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 103/320 (32%), Positives = 189/320 (59%), Gaps = 18/320 (5%)
Query: 3 GTLAILLIGNHVSYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRG 62
G L +IG VSY +LN+ +++PV+FF+ ++PE+P++ + + L+W+RG
Sbjct: 150 GFLMEAVIGPLVSYRTLNVVSAVVPVLFFVAAVWLPESPYYLLKRGRRPQAAVCLQWFRG 209
Query: 63 NKKDVMEEMNSIMDKTQEDLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITY 122
DV+ E++ + ++++++++ + EL ++ + RA +V+AA QR GGI+ ++ Y
Sbjct: 210 GG-DVVHELDLMEVNVRKEMENRSTFQELFASRKDMRALAIVVAACATQRGGGISCILAY 268
Query: 123 SSTLLPKLDNAYFGP----DQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLL 178
SS +LP DN GP + +++F + + + N + L+D +GRKPL S A +L
Sbjct: 269 SSLILP--DN---GPLLNKHESVMLFAVTLAVVNLVAVALVDRVGRKPLLLLSEAGMAVL 323
Query: 179 TFSTGLF-YLYQGELPNFQ-----YIPYITTLLYAASYY-GIGCLPNILVSELFPINVRC 231
T + +F Y +G+ ++ ++PY+ +A + G+G +P + + E+FP+N+R
Sbjct: 324 TLTFAVFFYCSRGDGSDWASRELAWLPYLCHWSFAVMFATGVGFVPVVFLGEMFPVNIRS 383
Query: 232 QASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFNYFYLMETKQKTL 291
S+ AS+ LAF SF+T K + ++ G H +F +++ V+F + Y Y +ETK KTL
Sbjct: 384 HCSAIASITLAFCSFVTNKMFLFVSNRYGFHAMFLLFTVVNFAGTFYTYKYAIETKGKTL 443
Query: 292 AEIQESIMNSHKQLRREKTS 311
EIQE + ++ + RREKT+
Sbjct: 444 QEIQEQLQDTVGR-RREKTN 462
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328723119|ref|XP_003247763.1| PREDICTED: facilitated trehalose transporter Tret1-like isoform 2 [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 170 bits (431), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 106/298 (35%), Positives = 159/298 (53%), Gaps = 6/298 (2%)
Query: 3 GTLAILLIGNHVSYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRG 62
G LA+ IG Y LN+ +F +LF +PE+P++ K + EKSL+ R
Sbjct: 132 GMLAMQTIGRVFDYRQLNMLGLFFSTVFTVLFFVMPESPYYLMQKGRRDQAEKSLRRIRA 191
Query: 63 NKKDVMEEMNSIMDKTQEDLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITY 122
K DV +E+ I + ++SK Y EL NKSNR+AF + AS+FQRL GI+ I +
Sbjct: 192 -KDDVTDELEMIEKTVTKQMQSKATYSELFMNKSNRKAFAITAGASVFQRLSGISPFIHF 250
Query: 123 SSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLT--F 180
SS LP + + P ++VF + + NF+ L+D +GRKPL S A L+T +
Sbjct: 251 SSITLPS-THYWMNPLVAVMVFTLTKSVGNFVPLVLVDWMGRKPLMVVSHAAMALVTAAY 309
Query: 181 STGLFYLYQG-ELPNFQYIPYITTLLYAASY-YGIGCLPNILVSELFPINVRCQASSCAS 238
GL+ + G E F + P ++ YA SY G G L L+ E+F NV+ +A+
Sbjct: 310 GVGLYVVANGPEDKPFAWWPVVSLWAYALSYSLGAGTLTYTLLGEMFAANVKTRAAPLCV 369
Query: 239 VALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFNYFYLMETKQKTLAEIQE 296
+ LA GSF+ + I ++ G H +F+YS+ + V F ++ETK KT EI+E
Sbjct: 370 MMLAGGSFVLDGTYTTIAQAFGVHSNYFMYSAFNLIWAVTAGFVMVETKGKTFLEIEE 427
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328723117|ref|XP_003247762.1| PREDICTED: facilitated trehalose transporter Tret1-like isoform 1 [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 106/298 (35%), Positives = 159/298 (53%), Gaps = 6/298 (2%)
Query: 3 GTLAILLIGNHVSYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRG 62
G LA+ IG Y LN+ +F +LF +PE+P++ K + EKSL+ R
Sbjct: 152 GMLAMQTIGRVFDYRQLNMLGLFFSTVFTVLFFVMPESPYYLMQKGRRDQAEKSLRRIRA 211
Query: 63 NKKDVMEEMNSIMDKTQEDLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITY 122
K DV +E+ I + ++SK Y EL NKSNR+AF + AS+FQRL GI+ I +
Sbjct: 212 -KDDVTDELEMIEKTVTKQMQSKATYSELFMNKSNRKAFAITAGASVFQRLSGISPFIHF 270
Query: 123 SSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLT--F 180
SS LP + + P ++VF + + NF+ L+D +GRKPL S A L+T +
Sbjct: 271 SSITLPS-THYWMNPLVAVMVFTLTKSVGNFVPLVLVDWMGRKPLMVVSHAAMALVTAAY 329
Query: 181 STGLFYLYQG-ELPNFQYIPYITTLLYAASY-YGIGCLPNILVSELFPINVRCQASSCAS 238
GL+ + G E F + P ++ YA SY G G L L+ E+F NV+ +A+
Sbjct: 330 GVGLYVVANGPEDKPFAWWPVVSLWAYALSYSLGAGTLTYTLLGEMFAANVKTRAAPLCV 389
Query: 239 VALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFNYFYLMETKQKTLAEIQE 296
+ LA GSF+ + I ++ G H +F+YS+ + V F ++ETK KT EI+E
Sbjct: 390 MMLAGGSFVLDGTYTTIAQAFGVHSNYFMYSAFNLIWAVTAGFVMVETKGKTFLEIEE 447
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328703922|ref|XP_001945667.2| PREDICTED: facilitated trehalose transporter Tret1-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 164 bits (416), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 94/298 (31%), Positives = 157/298 (52%), Gaps = 6/298 (2%)
Query: 2 VGTLAILLIGNHVSYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYR 61
+G LA L +G V Y +N ++ + F VPETPH+ +K+ + +L+WYR
Sbjct: 146 LGMLAALSLGPRVPYVIMNGFSMVIGLAFLAAVIRVPETPHYLLSKSRMDDARTALRWYR 205
Query: 62 --GNKKDVMEEMNSIMDKTQEDLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSM 119
D +N IM Q+D++ Y EL T+ NR A LV+ A QR GG+ +
Sbjct: 206 PRSTSTDNNRRLNQIMLAVQDDMRDPGTYRELFTDDGNRAAVLLVVGACFAQRAGGVGCV 265
Query: 120 ITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLT 179
+ YS+T +P + P+ +VF ++ + + PL+D+ GR+PL+ S +T
Sbjct: 266 LAYSTTTMPT--HGPVRPENVAIVFAVVRLACSVVAVPLIDLYGRRPLTLGSHLALAAIT 323
Query: 180 FSTGLFYLYQGELPNFQYIPYITTLLYAASY-YGIGCLPNILVSELFPINVRCQASSCAS 238
+ L LY + P+ + P +L++ +Y G G +P LV E+FP NV+ A + S
Sbjct: 324 AAYALCLLYIDDRPD-NWGPSACVILFSMAYSMGAGIVPGALVGEMFPNNVKSHAVTVVS 382
Query: 239 VALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFNYFYLMETKQKTLAEIQE 296
+ + GSFI K ++ I+ + G H++FF++ V+ + Y +L ETK +L+ IQ+
Sbjct: 383 LVSSLGSFIINKAYLPISDAFGVHIMFFVFCIVNAAWAILAYLFLFETKGMSLSAIQD 440
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328699079|ref|XP_001946696.2| PREDICTED: facilitated trehalose transporter Tret1-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 102/316 (32%), Positives = 167/316 (52%), Gaps = 9/316 (2%)
Query: 3 GTLAILLIGNHVSYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRG 62
G L + +G VSY++L ++P F ++PE+P+++ +++ KK +S+ W G
Sbjct: 154 GILYVYCVGPLVSYDALTYYSLLVPCAFLGTCLWIPESPYYYVLRDDDKKAHESVAWLHG 213
Query: 63 NKKD--VMEEMNSIMDKTQEDLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMI 120
N + V+ E+ I + ++DL+ K +L ++ +R+AF +V + L G+T+++
Sbjct: 214 NAEPDVVVRELMRIKAEARDDLQDKGSIRDLFGSRCSRKAFLIVQIVAAADVLSGMTTVL 273
Query: 121 TYSSTLLPKLD-NAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGC-LL 178
Y+S+ D + PDQ ++ +++F + F+ L+D LGR+PL FS GC
Sbjct: 274 AYASSTFAHADTDKTLSPDQFTMLLGVLIFCTTFVTGYLVDKLGRRPLLLFSC-FGCGAF 332
Query: 179 TFSTGLFYL--YQGELPNFQYIPYITTLLYAASY-YGIGCLPNILVSELFPINVRCQASS 235
TGL+Y + G +IP+ +A Y G+G L L E+FP NVR AS+
Sbjct: 333 ELVTGLYYYKRWVGFESLGAWIPFTAIGSFAVIYSIGLGPLLPTLQGEMFPSNVRGLASA 392
Query: 236 CASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFNYFYLMETKQKTLAEIQ 295
SV L SF+ K + +IT G HV +FIY + S + Y +L ETK KT A+IQ
Sbjct: 393 ITSVTLTVISFVGLKMYQVITDQWGIHVNYFIYGTGCLMSFLLIYRFLPETKGKTFAQIQ 452
Query: 296 ESIMNS-HKQLRREKT 310
IM + + R KT
Sbjct: 453 NEIMKTIDDRPSRGKT 468
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195154677|ref|XP_002018248.1| GL16864 [Drosophila persimilis] gi|194114044|gb|EDW36087.1| GL16864 [Drosophila persimilis] | Back alignment and taxonomy information |
|---|
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 91/303 (30%), Positives = 155/303 (51%), Gaps = 6/303 (1%)
Query: 3 GTLAILLIGNHVSYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRG 62
G L ++G + +NI ILP+IFF+LF ++PE+P + A K K EKSLK+ RG
Sbjct: 148 GVLYGFIVGAYAKVKMMNILCGILPIIFFVLFIWMPESPVYLAQKGKNDKAEKSLKFLRG 207
Query: 63 NKKDVMEEMNSIMDKTQEDLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITY 122
DV E N + E K K ++ L K+ ++ + M +FQ++ GI ++I Y
Sbjct: 208 KDADVSAESNQM---ASEGNKEKVKPMQALCRKNTLKSLGISMMLMVFQQVTGINAIIFY 264
Query: 123 SSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFST 182
S+ + F P ++ ++M ++ + L+D +GRK L SAAL + T
Sbjct: 265 STGIFTDAGTG-FSPAISTIIIGVVMVIATIVSIMLIDRVGRKILLLVSAALMFVTTLIM 323
Query: 183 GLFYLYQGELPNFQYIPYITTLLYAASY-YGIGCLPNILVSELFPINVRCQASSCASVAL 241
+++ + + N ++P + ++ + + +G G +P +L++ELF + + A + A
Sbjct: 324 AVYFQWLLK-KNVGWLPVLAVCVFISGFSFGFGPVPWLLMAELFAEDAKPVAGAIAGTTN 382
Query: 242 AFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFNYFYLMETKQKTLAEIQESIMNS 301
+FI T LI G F+I+++V F +++F F + ETK KTL EIQ I
Sbjct: 383 WMCAFIVTLAFPLIKDGFGAAACFWIFAAVSFAAIIFVMFLVPETKGKTLNEIQGMIAGG 442
Query: 302 HKQ 304
K
Sbjct: 443 KKD 445
|
Source: Drosophila persimilis Species: Drosophila persimilis Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|198458593|ref|XP_002138561.1| GA24319 [Drosophila pseudoobscura pseudoobscura] gi|198136395|gb|EDY69119.1| GA24319 [Drosophila pseudoobscura pseudoobscura] | Back alignment and taxonomy information |
|---|
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 90/303 (29%), Positives = 155/303 (51%), Gaps = 6/303 (1%)
Query: 3 GTLAILLIGNHVSYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRG 62
G L ++G + +NI ILP+IFF+LF ++PE+P + A K K EKSLK+ RG
Sbjct: 148 GVLYGFIVGAYAKVKMMNILCGILPIIFFVLFIWMPESPVYLAQKGKNDKAEKSLKFLRG 207
Query: 63 NKKDVMEEMNSIMDKTQEDLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITY 122
DV E N + E K K ++ L K+ ++ + + +FQ++ GI ++I Y
Sbjct: 208 KDADVSAESNQM---ASEGNKEKVKPMQALCRKNTLKSLGISIMLMVFQQVTGINAIIFY 264
Query: 123 SSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFST 182
S+ + F P ++ ++M ++ + L+D +GRK L SAAL + T
Sbjct: 265 STGIFTDAGTG-FSPAISTIIIGVVMVIATIVSIMLIDRVGRKILLLVSAALMFVTTLIM 323
Query: 183 GLFYLYQGELPNFQYIPYITTLLYAASY-YGIGCLPNILVSELFPINVRCQASSCASVAL 241
+++ + + N ++P + ++ + + +G G +P +L++ELF + + A + A
Sbjct: 324 AVYFQWLLK-KNVGWLPVLAVCVFISGFSFGFGPVPWLLMAELFAEDAKPVAGAIAGTTN 382
Query: 242 AFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFNYFYLMETKQKTLAEIQESIMNS 301
+FI T LI G F+I+++V F +++F F + ETK KTL EIQ I
Sbjct: 383 WMCAFIVTLAFPLIKDGFGAAACFWIFAAVSFAAIIFVLFLVPETKGKTLNEIQGMIAGG 442
Query: 302 HKQ 304
K
Sbjct: 443 KKD 445
|
Source: Drosophila pseudoobscura pseudoobscura Species: Drosophila pseudoobscura Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 362 | ||||||
| UNIPROTKB|B0WC46 | 517 | Tret1 "Facilitated trehalose t | 0.801 | 0.560 | 0.285 | 3.1e-35 | |
| UNIPROTKB|A9ZSY2 | 502 | Tret1 "Facilitated trehalose t | 0.795 | 0.573 | 0.282 | 2.9e-32 | |
| UNIPROTKB|Q17NV8 | 806 | Tret1 "Facilitated trehalose t | 0.820 | 0.368 | 0.266 | 3.2e-32 | |
| UNIPROTKB|Q7PIR5 | 793 | Tret1 "Facilitated trehalose t | 0.820 | 0.374 | 0.279 | 4.8e-32 | |
| UNIPROTKB|A5LGM7 | 504 | Tret1 "Facilitated trehalose t | 0.825 | 0.593 | 0.281 | 6e-32 | |
| UNIPROTKB|B3NSE1 | 856 | Tret1 "Facilitated trehalose t | 0.820 | 0.346 | 0.273 | 3e-30 | |
| FB|FBgn0050035 | 857 | Tret1-1 "Trehalose transporter | 0.828 | 0.350 | 0.272 | 3e-30 | |
| UNIPROTKB|A9ZSY3 | 505 | Tret1 "Facilitated trehalose t | 0.850 | 0.609 | 0.253 | 6.1e-30 | |
| UNIPROTKB|B4LPX5 | 911 | Tret1 "Facilitated trehalose t | 0.820 | 0.326 | 0.279 | 7.3e-30 | |
| UNIPROTKB|B4HNS0 | 857 | Tret1-1 "Facilitated trehalose | 0.831 | 0.351 | 0.273 | 8.2e-30 |
| UNIPROTKB|B0WC46 Tret1 "Facilitated trehalose transporter Tret1" [Culex quinquefasciatus (taxid:7176)] | Back alignment and assigned GO terms |
|---|
Score = 359 (131.4 bits), Expect = 3.1e-35, Sum P(2) = 3.1e-35
Identities = 88/308 (28%), Positives = 165/308 (53%)
Query: 2 VGTLAILLIGNHVSYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYR 61
+G L + GN++ ++ L + LPV F IL +PETP ++ ++ + K+L+W R
Sbjct: 197 IGILLCFVAGNYMDWSELAFLGATLPVPFLILMFLIPETPRWYVSRGRDDRARKALQWLR 256
Query: 62 GNKKDVMEEMNSIMDKTQEDLK---SKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITS 118
G K DV E+ I+ K+ +D + S++ L+LL K+N + + + FQ+L GI +
Sbjct: 257 GKKADVDPELKGII-KSHQDAERHASQSAMLDLL-KKTNLKPLLISLGLMFFQQLSGINA 314
Query: 119 MITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLL 178
+I Y+ + + + C ++ ++ F++ F+ L+D LGRK L + + + ++
Sbjct: 315 VIFYTVQIFQDAGST-IDENLCTIIVGVVNFIATFIATLLIDRLGRKML-LYISDIAMII 372
Query: 179 TFST--GLFYLYQ--GELPNFQYIPYITTLLYAASY-YGIGCLPNILVSELFPINVRCQA 233
T T G FY+ G++ + ++P + +++ + G G +P +++ E+ P +R
Sbjct: 373 TLMTLGGFFYVKNNGGDVSHIGWLPLASFVIFVLGFSLGFGPIPWLMMGEILPGKIR--- 429
Query: 234 SSCASVALAFG---SFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFNYFYLMETKQKT 290
S ASVA AF +F+ TK I S+G H F+++ SV +VF Y+ ET+ K+
Sbjct: 430 GSAASVATAFNWSCTFVVTKTFADIIASIGTHGAFWMFGSVCVVGLVFVIMYVPETQGKS 489
Query: 291 LAEIQESI 298
L +I+ +
Sbjct: 490 LEDIERKM 497
|
|
| UNIPROTKB|A9ZSY2 Tret1 "Facilitated trehalose transporter Tret1" [Apis mellifera ligustica (taxid:7469)] | Back alignment and assigned GO terms |
|---|
Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
Identities = 85/301 (28%), Positives = 163/301 (54%)
Query: 3 GTLAILLIGNHVSYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRG 62
G L G ++++ +L + + +P+IF IL +PETP ++ +K +K+ KSL+W RG
Sbjct: 184 GILMCFTAGMYLAWRNLALLGACIPIIFLILMFLIPETPRWYISKGKIKEARKSLQWLRG 243
Query: 63 NKKDVMEEMNSIMDKTQEDLKSKT-GYLELLTNKSNRRAFTLVMAASLFQRLGGITSMIT 121
D+ EE++SI E + T G L L K++ + + + FQ+ GI ++I
Sbjct: 244 KTADISEELDSIQKMHIESERIATEGALIELFRKNHIKPVFISLGLMFFQQFSGINAVIF 303
Query: 122 YSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFS 181
Y+ + K + + ++ ++ F+S F+ A ++D LGRK L S+ L C+ F+
Sbjct: 304 YTVQIF-KDSGSTVDENLSTIIVGLVNFISTFVAAMIIDRLGRKMLLYISSILMCITLFT 362
Query: 182 TGLFYLYQGELPN---FQYIPYITTLLYAASY-YGIGCLPNILVSELFPINVRCQASSCA 237
G F+ Y EL + F +IP ++ ++Y + +G G +P +++ E+ P+ +R + A
Sbjct: 363 FGTFF-YVKELMDVTAFGWIPLMSLIVYVIGFSFGFGPIPWLMMGEILPVKIR---GTAA 418
Query: 238 SVALAFG---SFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFNYFYLMETKQKTLAEI 294
SVA AF +F+ TK + + +G + F+++ ++ + +F + ET+ ++L EI
Sbjct: 419 SVATAFNWSCTFVVTKTYEDLVLHIGPYGTFWLFGTLVAVAFIFVIICVPETRGRSLEEI 478
Query: 295 Q 295
+
Sbjct: 479 E 479
|
|
| UNIPROTKB|Q17NV8 Tret1 "Facilitated trehalose transporter Tret1" [Aedes aegypti (taxid:7159)] | Back alignment and assigned GO terms |
|---|
Score = 349 (127.9 bits), Expect = 3.2e-32, Sum P(2) = 3.2e-32
Identities = 84/315 (26%), Positives = 165/315 (52%)
Query: 2 VGTLAILLIGNHVSYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYR 61
+G L + G ++ ++ L + LP+ F +L +PETP ++ ++ + K+L+W R
Sbjct: 486 IGILLCFVAGKYMDWSGLAFLGAALPIPFLLLMFLIPETPRWYVSRGRDDRARKALQWLR 545
Query: 62 GNKKDVMEEMNSIMDKTQEDLK---SKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITS 118
G K DV E+ I+ K+ +D + S++ L+L+ K+N + + + FQ+L GI +
Sbjct: 546 GKKADVDPELKGII-KSHQDAERHASQSAMLDLM-KKANLKPLLISLGLMFFQQLSGINA 603
Query: 119 MITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLL 178
+I Y+ + + + C ++ ++ F++ F+ L+D LGRK L + + + ++
Sbjct: 604 VIFYTVQIFQDAGST-IDENLCTIIVGVVNFIATFIATMLIDRLGRKML-LYISDVAMII 661
Query: 179 TFST--GLFYLYQG--ELPNFQYIPYITTLLYAASY-YGIGCLPNILVSELFPINVRCQA 233
T T G FY+ ++ ++P ++Y + G G +P +++ E+ P +R
Sbjct: 662 TLMTLGGFFYVKNSGQDVSQVGWLPLAAFVIYVLGFSLGFGPIPWLMMGEILPGKIR--- 718
Query: 234 SSCASVALAFG---SFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFNYFYLMETKQKT 290
S ASVA AF +FI TK I ++G H F+++ S+ + F FY+ ET+ K+
Sbjct: 719 GSAASVATAFNWSCTFIVTKTFADIINAIGTHGTFWMFGSICVIGLAFVIFYVPETQGKS 778
Query: 291 LAEIQESIMNSHKQL 305
L +I+ +M +++
Sbjct: 779 LEDIERKMMGRVRRM 793
|
|
| UNIPROTKB|Q7PIR5 Tret1 "Facilitated trehalose transporter Tret1" [Anopheles gambiae (taxid:7165)] | Back alignment and assigned GO terms |
|---|
Score = 360 (131.8 bits), Expect = 4.8e-32, P = 4.8e-32
Identities = 88/315 (27%), Positives = 164/315 (52%)
Query: 2 VGTLAILLIGNHVSYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYR 61
+G L + G ++ ++ L + LP+ F +L +PETP ++ ++N + K+L+W R
Sbjct: 473 IGILLCFVAGKYLDWSGLAFLGAALPIPFLLLMFLIPETPRWYVSRNREDRARKALQWLR 532
Query: 62 GNKKDVMEEMNSIMDKTQEDLK---SKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITS 118
G K DV E+ I K+ +D + S + L+LL NK+N + + + FQ+L GI +
Sbjct: 533 GRKADVEPELKGI-SKSHQDAERHASSSAMLDLL-NKANLKPLLISLGLMFFQQLSGINA 590
Query: 119 MITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFS--AALGC 176
+I Y+ + + C ++ ++ F++ F+ L+D LGRK L S A +
Sbjct: 591 VIFYTVQIFQSAGST-IDEKLCTIIVGVVNFIATFIATVLIDRLGRKILLYISDVAMIIT 649
Query: 177 LLTFSTGLFYLYQG--ELPNFQYIPYITTLLYAASY-YGIGCLPNILVSELFPINVRCQA 233
L+T T FY+ ++ ++P +++ + G G +P +++ E+ P +R
Sbjct: 650 LMTLGT-FFYMKNNGDDVSEIGWLPLAAFVVFVVGFSLGFGPIPWLMMGEILPGKIR--- 705
Query: 234 SSCASVALAFG---SFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFNYFYLMETKQKT 290
S ASVA AF +F+ TK IT S+G H F+++ S+ ++F Y+ ET+ K+
Sbjct: 706 GSAASVATAFNWSCTFVVTKTFADITASIGNHGAFWMFGSICIVGLLFVIVYVPETQGKS 765
Query: 291 LAEIQESIMNSHKQL 305
L +I+ +M +++
Sbjct: 766 LEDIERKMMGRVRRM 780
|
|
| UNIPROTKB|A5LGM7 Tret1 "Facilitated trehalose transporter Tret1" [Polypedilum vanderplanki (taxid:319348)] | Back alignment and assigned GO terms |
|---|
Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
Identities = 88/313 (28%), Positives = 160/313 (51%)
Query: 2 VGTLAILLIGNHVSYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYR 61
+G L + G +V+++ L SILP+ F +L +PETP + + ++ K+L+W R
Sbjct: 184 IGILICFVAGKYVNWSGLAFIGSILPIPFMVLTLLIPETPRWFVTRGREERARKALQWLR 243
Query: 62 GNKKDVMEEMNSIMDKTQEDLK--SKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSM 119
G K DV E+ I+ E + S+ +L+ +SN + + + FQ+L GI ++
Sbjct: 244 GKKADVEPELKGIVKSHCEAERHASQNAIFDLM-KRSNLKPLLIALGLMFFQQLSGINAV 302
Query: 120 ITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFS--AALGCL 177
I Y+ ++ K + + C ++ ++ F + F L+D LGRK L S A + L
Sbjct: 303 IFYTVSIF-KDAGSTIDENLCTIIVGVVNFGATFFATVLIDRLGRKILLYISEVAMVITL 361
Query: 178 LTFSTGLFYLYQG-ELPNFQYIPYITTLLYAASYY-GIGCLPNILVSELFPINVRCQASS 235
LT T +Y G ++ N ++P + ++Y + G+G +P +++ E+ P +R S
Sbjct: 362 LTLGTFFYYKNSGNDVSNIGWLPLASFVIYVIGFSSGVGPIPWLMLGEILPGKIR---GS 418
Query: 236 CASVALAFG---SFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFNYFYLMETKQKTLA 292
ASVA F +FI TK I ++G H F+ + + + F F++ ET+ K+L
Sbjct: 419 AASVATGFNWTCTFIVTKTFADIVAAIGNHGAFWFFGVICLIGLFFVIFFVPETQGKSLE 478
Query: 293 EIQESIMNSHKQL 305
EI+ +M +++
Sbjct: 479 EIERKMMGRVRRM 491
|
|
| UNIPROTKB|B3NSE1 Tret1 "Facilitated trehalose transporter Tret1" [Drosophila erecta (taxid:7220)] | Back alignment and assigned GO terms |
|---|
Score = 344 (126.2 bits), Expect = 3.0e-30, P = 3.0e-30
Identities = 86/315 (27%), Positives = 165/315 (52%)
Query: 2 VGTLAILLIGNHVSYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYR 61
+G L + G+ ++++ L + LPV F IL +PETP + ++ ++ K+L W R
Sbjct: 536 IGILLCFVAGSFMNWSMLAFLGAALPVPFLILMFLIPETPRWFVSRGREERARKALSWLR 595
Query: 62 GNKKDVMEEMNSIMDKTQEDLK---SKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITS 118
G + DV E+ +M ++Q D ++ LELL ++N + ++ + FQ+L GI +
Sbjct: 596 GKEADVEPELKGLM-RSQADADRQATQNTMLELL-KRNNLKPLSISLGLMFFQQLSGINA 653
Query: 119 MITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLL 178
+I Y+ + + G + C ++ ++ FL+ F+ L+D GRK L + + + +L
Sbjct: 654 VIFYTVQIFKDAGSTIDG-NICTIIVGVVNFLATFIGIVLIDRAGRKIL-LYVSNIAMIL 711
Query: 179 TFST--GLFYL--YQGELPNFQYIPYITTLLYAASY-YGIGCLPNILVSELFPINVRCQA 233
T G FY + ++ N ++P ++Y + G G +P +++ E+ P +R
Sbjct: 712 TLFVLGGFFYCKAHGPDVSNLGWLPLTCFVIYILGFSLGFGPIPWLMMGEILPAKIR--- 768
Query: 234 SSCASVALAFG---SFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFNYFYLMETKQKT 290
S ASVA AF +F+ TK +T ++G H F+++ ++ F + F Y+ ET+ KT
Sbjct: 769 GSAASVATAFNWSCTFVVTKTFQDLTVAMGAHGAFWLFGAICFVGLFFVIIYVPETQGKT 828
Query: 291 LAEIQESIMNSHKQL 305
L +I+ +M +++
Sbjct: 829 LEDIERKMMGRVRRM 843
|
|
| FB|FBgn0050035 Tret1-1 "Trehalose transporter 1-1" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 344 (126.2 bits), Expect = 3.0e-30, P = 3.0e-30
Identities = 85/312 (27%), Positives = 162/312 (51%)
Query: 2 VGTLAILLIGNHVSYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYR 61
+G L + G+ ++++ L + LPV F IL +PETP + + ++ K+LKW R
Sbjct: 537 IGILLCFVAGSFMNWSMLAFLGAALPVPFLILMFLIPETPRWFVGRGLEERARKALKWLR 596
Query: 62 GNKKDVMEEMNSIMDKTQEDLK---SKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITS 118
G + DV E+ +M ++Q D S+ LELL +N + ++ + FQ+ GI +
Sbjct: 597 GKEADVEPELKGLM-RSQADADRQASRNTMLELL-KLNNLKPLSISLGLMFFQQFSGINA 654
Query: 119 MITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLL 178
+I Y+ + + G + C ++ I+ FL+ F+ L+D GRK L + + + +L
Sbjct: 655 VIFYTVQIFKDAGSTIDG-NLCTIIVGIVNFLATFIGIVLIDRAGRKIL-LYVSDIAMVL 712
Query: 179 TFST--GLFYL--YQGELPNFQYIPYITTLLYAASY-YGIGCLPNILVSELFPINVRCQA 233
T G FY Y ++ + ++P ++Y + G G +P +++ E+ P +R A
Sbjct: 713 TLFVLGGFFYCKTYGPDVSHLGWLPLTCFVIYILGFSLGFGPIPWLMMGEILPAKIRGSA 772
Query: 234 SSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFNYFYLMETKQKTLAE 293
+S A+ F +F+ TK +T ++G H F+++ ++ F + F Y+ ET+ KTL +
Sbjct: 773 ASVATAFNWFCTFVVTKTFQDLTVAMGAHGAFWLFGAICFVGLFFVIIYVPETQGKTLED 832
Query: 294 IQESIMNSHKQL 305
I+ +M +++
Sbjct: 833 IERKMMGRVRRM 844
|
|
| UNIPROTKB|A9ZSY3 Tret1 "Facilitated trehalose transporter Tret1" [Bombyx mori (taxid:7091)] | Back alignment and assigned GO terms |
|---|
Score = 333 (122.3 bits), Expect = 6.1e-30, P = 6.1e-30
Identities = 80/315 (25%), Positives = 164/315 (52%)
Query: 3 GTLAILLIGNHVSYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRG 62
G L L+G+++ +++L + +PV FF+L PETP ++ +K +++ KSL+W RG
Sbjct: 189 GILLAFLVGSYLDWSNLAFFGAAIPVPFFLLMILTPETPRWYVSKARVQEARKSLRWLRG 248
Query: 63 NKKDVMEEMNSI-MDKTQEDLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMIT 121
++ +EM + + +T+ D + +L + K A + + LFQ+L GI ++I
Sbjct: 249 KNVNIEKEMRDLTISQTESDRTGGNAFKQLFS-KRYLPAVMISLGLMLFQQLTGINAVIF 307
Query: 122 YSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFS 181
Y++++ ++ + + ++ ++ F+S F+ L+D LGRK L S+ +
Sbjct: 308 YAASIF-QMSGSSVDENLASIIIGVVNFISTFIATMLIDRLGRKVLLYISSVAMITTLLA 366
Query: 182 TGL-FYLYQG--ELPNFQYIPYITTLLYAASY-YGIGCLPNILVSELFPINVRCQASSCA 237
G FYL Q ++ + ++P ++Y + G G +P +++ E+ P +R A+S A
Sbjct: 367 LGAYFYLKQNHIDVTAYGWLPLACLVIYVLGFSIGFGPIPWLMLGEILPSKIRGTAASLA 426
Query: 238 SVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFNYFYLMETKQKTLAEIQES 297
+ +FI TK I ++ H ++++ + ++F F++ ETK K+L EI+
Sbjct: 427 TGFNWTCTFIVTKTFQNIIDAIYMHGTLWLFAVICIGGLLFVIFFVPETKGKSLEEIEMK 486
Query: 298 IMNSHKQLRREKTSP 312
+ + +++R P
Sbjct: 487 LTSGSRRVRNISKQP 501
|
|
| UNIPROTKB|B4LPX5 Tret1 "Facilitated trehalose transporter Tret1" [Drosophila virilis (taxid:7244)] | Back alignment and assigned GO terms |
|---|
Score = 341 (125.1 bits), Expect = 7.3e-30, P = 7.3e-30
Identities = 88/315 (27%), Positives = 162/315 (51%)
Query: 2 VGTLAILLIGNHVSYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYR 61
+G L + G ++ ++ L + LPV F IL +PETP ++ ++ ++ K+L W R
Sbjct: 591 IGILLCFVAGTYMDWSMLAFLGASLPVPFLILMFLIPETPRWYVSRGREERARKALVWLR 650
Query: 62 GNKKDVMEEMNSIMDKTQEDLK---SKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITS 118
G + DV E+ +M ++Q D ++ LELL +SN + ++ + FQ+L GI +
Sbjct: 651 GKEADVEPELKGLM-RSQADADRQATQNKMLELL-KRSNLKPLSISLGLMFFQQLSGINA 708
Query: 119 MITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLL 178
+I Y+ + + G + C ++ ++ F + F+ L+D GRK L S + L
Sbjct: 709 VIFYTVQIFQDAGSTIDG-NVCTIIVGVVNFAATFIATILIDRAGRKVLLYVSNVMMVLT 767
Query: 179 TFSTGLFYLYQG---ELPNFQYIPYITTLLYAASY-YGIGCLPNILVSELFPINVRCQAS 234
F G F+ + + N ++P ++Y + G G +P +++ E+ P +R
Sbjct: 768 LFVLGGFFYCKSSGMDTSNVGWLPLSCFVIYILGFSLGFGPIPWLMMGEILPAKIR---G 824
Query: 235 SCASVALAFG---SFITTK-FHILITKSLGQHVIFFIYSSVHFCSVVFNYFYLMETKQKT 290
S ASVA AF +F+ TK F +I +G H F+++ ++ F + F FY+ ET+ KT
Sbjct: 825 SAASVATAFNWSCTFVVTKSFQDMID-FMGAHGAFWMFGAICFIGLFFVIFYVPETQGKT 883
Query: 291 LAEIQESIMNSHKQL 305
L +I+ +M +++
Sbjct: 884 LEDIERKMMGRVRRM 898
|
|
| UNIPROTKB|B4HNS0 Tret1-1 "Facilitated trehalose transporter Tret1-1" [Drosophila sechellia (taxid:7238)] | Back alignment and assigned GO terms |
|---|
Score = 340 (124.7 bits), Expect = 8.2e-30, P = 8.2e-30
Identities = 85/311 (27%), Positives = 158/311 (50%)
Query: 2 VGTLAILLIGNHVSYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYR 61
+G L + G+ ++++ L + LPV F IL +PETP + + ++ K+LKW R
Sbjct: 537 IGILLCFVAGSFMNWSMLAFLGAALPVPFLILMFLIPETPRWFVGRGLEERARKALKWLR 596
Query: 62 GNKKDVMEEMNSIMDKTQEDLK---SKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITS 118
G + DV E+ +M ++Q D S+ LELL +N + ++ + FQ+ GI +
Sbjct: 597 GKEADVEPELKGLM-RSQADADRQASRNTMLELL-KLNNLKPLSISLGLMFFQQFSGINA 654
Query: 119 MITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLL 178
+I Y+ + + G + C ++ I+ FL+ F+ L+D GRK L S L
Sbjct: 655 VIFYTVQIFKDAGSTIDG-NLCTIIVGIVNFLATFIGIVLIDRAGRKILLYVSDIAMVLT 713
Query: 179 TFSTGLFYLYQGELPNFQYI---PYITTLLYAASY-YGIGCLPNILVSELFPINVRCQAS 234
F G F+ + P+ ++ P ++Y + G G +P +++ E+ P +R A+
Sbjct: 714 LFVLGGFFYCKANGPDVSHLGWLPLTCFVIYILGFSLGFGPIPWLMMGEILPAKIRGSAA 773
Query: 235 SCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFNYFYLMETKQKTLAEI 294
S A+ F +F+ TK +T ++G H F+++ ++ F + F Y+ ET+ KTL +I
Sbjct: 774 SVATAFNWFCTFVVTKTFQDLTVAMGAHGAFWLFGAICFVGLFFVIIYVPETQGKTLEDI 833
Query: 295 QESIMNSHKQL 305
+ +M +++
Sbjct: 834 ERKMMGRVRRM 844
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 1.6.5.3 | LOW CONFIDENCE prediction! |
| 3rd Layer | 1.6.5 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 362 | |||
| TIGR00879 | 481 | TIGR00879, SP, MFS transporter, sugar porter (SP) | 2e-30 | |
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 9e-28 | |
| MTH00161 | 113 | MTH00161, ND3, NADH dehydrogenase subunit 3; Provi | 6e-18 | |
| pfam00507 | 102 | pfam00507, Oxidored_q4, NADH-ubiquinone/plastoquin | 2e-16 | |
| MTH00148 | 117 | MTH00148, ND3, NADH dehydrogenase subunit 3; Provi | 3e-16 | |
| MTH00202 | 117 | MTH00202, ND3, NADH dehydrogenase subunit 3; Provi | 3e-15 | |
| MTH00012 | 117 | MTH00012, ND3, NADH dehydrogenase subunit 3; Valid | 4e-15 | |
| MTH00069 | 114 | MTH00069, ND3, NADH dehydrogenase subunit 3; Provi | 3e-13 | |
| MTH00042 | 116 | MTH00042, ND3, NADH dehydrogenase subunit 3; Valid | 3e-13 | |
| MTH00136 | 116 | MTH00136, ND3, NADH dehydrogenase subunit 3; Provi | 5e-13 | |
| MTH00106 | 115 | MTH00106, ND3, NADH dehydrogenase subunit 3; Provi | 1e-12 | |
| MTH00203 | 112 | MTH00203, ND3, NADH dehydrogenase subunit 3; Provi | 6e-12 | |
| MTH00113 | 114 | MTH00113, ND3, NADH dehydrogenase subunit 3; Provi | 1e-11 | |
| MTH00055 | 118 | MTH00055, ND3, NADH dehydrogenase subunit 3; Provi | 4e-11 | |
| MTH00018 | 113 | MTH00018, ND3, NADH dehydrogenase subunit 3; Valid | 4e-11 | |
| PRK06602 | 121 | PRK06602, PRK06602, NADH:ubiquinone oxidoreductase | 1e-09 | |
| COG0838 | 123 | COG0838, NuoA, NADH:ubiquinone oxidoreductase subu | 1e-08 | |
| MTH00030 | 123 | MTH00030, ND3, NADH dehydrogenase subunit 3; Provi | 3e-08 | |
| TIGR00898 | 505 | TIGR00898, 2A0119, cation transport protein | 2e-07 | |
| PRK10077 | 479 | PRK10077, xylE, D-xylose transporter XylE; Provisi | 2e-07 | |
| MTH00092 | 111 | MTH00092, ND3, NADH dehydrogenase subunit 3; Provi | 9e-07 | |
| PRK08489 | 129 | PRK08489, PRK08489, NADH dehydrogenase subunit A; | 1e-05 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 3e-04 | |
| PRK07928 | 119 | PRK07928, PRK07928, NADH dehydrogenase subunit A; | 3e-04 | |
| PRK07756 | 122 | PRK07756, PRK07756, NADH dehydrogenase subunit A; | 0.003 |
| >gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Score = 120 bits (304), Expect = 2e-30
Identities = 73/281 (25%), Positives = 130/281 (46%), Gaps = 14/281 (4%)
Query: 25 ILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNK---KDVMEEMNSIM-DKTQE 80
I + F+ F+PE+P + K +++ KSL RG K++++E+ I ++ E
Sbjct: 204 IPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIE 263
Query: 81 DLKSKTGYLELLTNKSN-RRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQ 139
+ + L ++ RR L + FQ+ GI +++ YS T+ +NA D
Sbjct: 264 KRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIF---ENAGVSTDH 320
Query: 140 CIL---VFMIIMFLSNFLQAPLMDILGRKP--LSCFSAALGCLLTFSTGLFYLYQGELPN 194
L + + F F+ L+D GR+P L + CL G +
Sbjct: 321 AFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKS 380
Query: 195 FQYIPYITTLLYAASY-YGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHI 253
+ + LL+ A + G G +P ++VSE+FP+++R + S A A +FI
Sbjct: 381 SGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFP 440
Query: 254 LITKSLGQHVIFFIYSSVHFCSVVFNYFYLMETKQKTLAEI 294
+ +S+G +F + ++ ++F YF+L ETK +TL EI
Sbjct: 441 TMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEEI 481
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 9e-28
Identities = 75/281 (26%), Positives = 139/281 (49%), Gaps = 11/281 (3%)
Query: 21 IALSILPVIFFILFS-FVPETPHFHAAKNNLKKTEKSLKWYRGN---KKDVMEEMNSIMD 76
+ L +P I ++ F+PE+P + K L++ L RG +++ EE +S+
Sbjct: 173 LGLQFVPAILLLIGLLFLPESPRWLVLKGKLEEARAVLAKLRGVSDVDQEIQEEKDSLE- 231
Query: 77 KTQEDLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFG 136
+ K +LEL K+ R+ + + +FQ+L GI ++ YS T+ L +
Sbjct: 232 --RSVEAEKASWLELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFETLGLSD-- 287
Query: 137 PDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQ 196
++ ++ F+ F+ L+D GR+PL AA + G+ L +
Sbjct: 288 SLLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVALLGVAKSKGAG 347
Query: 197 YIPYITTLLYAASY-YGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILI 255
+ + LL+ A + G G +P ++VSELFP+ VR +A + A+ A +F+ +I
Sbjct: 348 IVAIVFILLFIAFFALGWGPVPWVIVSELFPLGVRPKAMAIATAANWLANFLIGFLFPII 407
Query: 256 TKSLGQHVIFFIYSSVHFCSVVFNYFYLMETKQKTLAEIQE 296
T ++G +V F +++ + ++F +F++ ETK +TL EI E
Sbjct: 408 TGAIGGYV-FLVFAGLLVLFILFVFFFVPETKGRTLEEIDE 447
|
Length = 449 |
| >gnl|CDD|177217 MTH00161, ND3, NADH dehydrogenase subunit 3; Provisional | Back alignment and domain information |
|---|
Score = 78.3 bits (194), Expect = 6e-18
Identities = 32/58 (55%), Positives = 42/58 (72%)
Query: 297 SIMNSHKQLRREKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSPLI 354
S+++ + REK+SPFECGFDP S R+ +SL FF IA+IFLIFD+EI L+ P I
Sbjct: 21 SLLSKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFI 78
|
Length = 113 |
| >gnl|CDD|215958 pfam00507, Oxidored_q4, NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 | Back alignment and domain information |
|---|
Score = 73.7 bits (182), Expect = 2e-16
Identities = 29/58 (50%), Positives = 42/58 (72%)
Query: 297 SIMNSHKQLRREKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSPLI 354
+++ K REK SP+ECGFDP+ K R+ +SL FF IA++FLIFD+EI L+ P ++
Sbjct: 11 FLLSPKKPSDREKLSPYECGFDPLGKARLPFSLRFFLIAILFLIFDVEIILLLPWAVV 68
|
Length = 102 |
| >gnl|CDD|214433 MTH00148, ND3, NADH dehydrogenase subunit 3; Provisional | Back alignment and domain information |
|---|
Score = 73.7 bits (182), Expect = 3e-16
Identities = 29/44 (65%), Positives = 37/44 (84%)
Query: 307 REKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFP 350
REK+SPFECGFDPIS R +SL FF +A++FL+FD+EI L+FP
Sbjct: 33 REKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFP 76
|
Length = 117 |
| >gnl|CDD|214455 MTH00202, ND3, NADH dehydrogenase subunit 3; Provisional | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 3e-15
Identities = 29/48 (60%), Positives = 38/48 (79%)
Query: 307 REKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSPLI 354
REK+SPFECGFDP R+ +S+ FF +A+IFL+FDIEI L+ P PL+
Sbjct: 33 REKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLV 80
|
Length = 117 |
| >gnl|CDD|164588 MTH00012, ND3, NADH dehydrogenase subunit 3; Validated | Back alignment and domain information |
|---|
Score = 70.7 bits (173), Expect = 4e-15
Identities = 31/48 (64%), Positives = 37/48 (77%)
Query: 307 REKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSPLI 354
REKTSPFECGFDP RI +SL FF +A+IF++FDIEI L+ P P I
Sbjct: 33 REKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPTI 80
|
Length = 117 |
| >gnl|CDD|177141 MTH00069, ND3, NADH dehydrogenase subunit 3; Provisional | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 3e-13
Identities = 24/45 (53%), Positives = 36/45 (80%)
Query: 308 EKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSP 352
EK SP+ECGFDP+ R+ +S+ FF +A++FL+FD+EI L+ P+P
Sbjct: 31 EKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPTP 75
|
Length = 114 |
| >gnl|CDD|177117 MTH00042, ND3, NADH dehydrogenase subunit 3; Validated | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 3e-13
Identities = 25/46 (54%), Positives = 37/46 (80%)
Query: 308 EKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSPL 353
EK+SP+ECGFDP++ R+ +S FF +A++FL+FD+EI L+FP P
Sbjct: 33 EKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPP 78
|
Length = 116 |
| >gnl|CDD|177194 MTH00136, ND3, NADH dehydrogenase subunit 3; Provisional | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 5e-13
Identities = 25/45 (55%), Positives = 35/45 (77%)
Query: 308 EKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSP 352
EK SP+ECGFDP+ R+ +SL FF +A++FL+FD+EI L+ P P
Sbjct: 33 EKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLP 77
|
Length = 116 |
| >gnl|CDD|177168 MTH00106, ND3, NADH dehydrogenase subunit 3; Provisional | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 1e-12
Identities = 24/45 (53%), Positives = 34/45 (75%)
Query: 308 EKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSP 352
EK SP+ECGFDP+ R+ +S+ FF +A+ FL+FD+EI L+ P P
Sbjct: 32 EKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLP 76
|
Length = 115 |
| >gnl|CDD|214456 MTH00203, ND3, NADH dehydrogenase subunit 3; Provisional | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 6e-12
Identities = 26/46 (56%), Positives = 34/46 (73%)
Query: 308 EKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSPL 353
EK SP+ECGFDP+ R+ +SL FF +AL FL+FD+EI L+ P P
Sbjct: 33 EKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPW 78
|
Length = 112 |
| >gnl|CDD|177175 MTH00113, ND3, NADH dehydrogenase subunit 3; Provisional | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 1e-11
Identities = 24/45 (53%), Positives = 35/45 (77%)
Query: 308 EKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSP 352
EK SP+ECGFDP+ R+ +S+ FF +A++FL+FD+EI L+ P P
Sbjct: 32 EKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLP 76
|
Length = 114 |
| >gnl|CDD|177128 MTH00055, ND3, NADH dehydrogenase subunit 3; Provisional | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 4e-11
Identities = 26/56 (46%), Positives = 38/56 (67%)
Query: 303 KQLRREKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSPLIKQKI 358
KQ EK S +ECGFDP RI +S+ FF + ++FLIFD+EI+ +FP ++ +I
Sbjct: 32 KQPDSEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLFPWCVVYNQI 87
|
Length = 118 |
| >gnl|CDD|164592 MTH00018, ND3, NADH dehydrogenase subunit 3; Validated | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 4e-11
Identities = 27/54 (50%), Positives = 35/54 (64%)
Query: 297 SIMNSHKQLRREKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFP 350
S KQ REK S +ECGFDP P +S+ FF I ++FLIFD+EI+ +FP
Sbjct: 21 SYFLGVKQPDREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFLFP 74
|
Length = 113 |
| >gnl|CDD|180638 PRK06602, PRK06602, NADH:ubiquinone oxidoreductase subunit A; Validated | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 1e-09
Identities = 18/44 (40%), Positives = 30/44 (68%)
Query: 307 REKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFP 350
REK SP+E GF+ R+ + + F+ +A++F+IFD+E +FP
Sbjct: 39 REKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFLFP 82
|
Length = 121 |
| >gnl|CDD|223908 COG0838, NuoA, NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 1e-08
Identities = 17/44 (38%), Positives = 31/44 (70%)
Query: 307 REKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFP 350
EK SP+ECG P R+ +S+ ++ +A++F++FD+E+ +FP
Sbjct: 39 PEKLSPYECGNPPFGGARLRFSVQYYLVAILFVVFDVEVVFLFP 82
|
Length = 123 |
| >gnl|CDD|164603 MTH00030, ND3, NADH dehydrogenase subunit 3; Provisional | Back alignment and domain information |
|---|
Score = 51.1 bits (122), Expect = 3e-08
Identities = 21/47 (44%), Positives = 34/47 (72%)
Query: 308 EKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSPLI 354
EK+S +ECGFDP K R +++ F + ++F+IFDIEI+ +FP ++
Sbjct: 42 EKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFLFPWSIV 88
|
Length = 123 |
| >gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 2e-07
Identities = 63/282 (22%), Positives = 111/282 (39%), Gaps = 29/282 (10%)
Query: 19 LNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYR--GNKKDVMEEMNSIMD 76
L +A+S+ +FF+L FVPE+P + ++ +++ K L+ KK E ++ ++
Sbjct: 245 LQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLE 304
Query: 77 KTQEDLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTL-LPKLD-NAY 134
K K + +L+L + R+ +M T+ Y L L L N Y
Sbjct: 305 KDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWF------TTAFSYYGLVLDLGNLGGNIY 358
Query: 135 FGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPN 194
D + ++ + + L+D LGR+ S L G+ L +P
Sbjct: 359 L--DL--FISGLVELPAKLITLLLIDRLGRRYTMAASLLLA-------GVALLLLLFVP- 406
Query: 195 FQYIPYITTLLYAASYYGIGCLPNIL---VSELFPINVRCQASSCASVALAFGSFITTKF 251
+ ++ T L +GI ++ +EL+P VR S GS I+
Sbjct: 407 -VDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFL 465
Query: 252 HILITKSLGQHVIFFIYSSVHFCSVVFNYFYLMETKQKTLAE 293
L K L + ++ + + + F L ETK L E
Sbjct: 466 VYLGEKWL--FLPLVLFGGLALLAGILTLF-LPETKGVPLPE 504
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505 |
| >gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 2e-07
Identities = 73/291 (25%), Positives = 129/291 (44%), Gaps = 47/291 (16%)
Query: 28 VIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNK--KDVMEEMNSIMDKTQEDLKSK 85
++F +L FVPETP + ++ ++ E L+ GN ++E+ +D ++
Sbjct: 205 LLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLATQALQEIKHSLDHGRK----T 260
Query: 86 TGYLELLTNKSNRRAFTLV--MAASLFQRLGGITSMITYSSTLLPKL----DNAYFGPDQ 139
G +LL +V + S+FQ+ GI ++ Y+ + L D A
Sbjct: 261 GG--KLLMFG----VGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIA------ 308
Query: 140 CILVFMIIMFLSNFLQAPL----MDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNF 195
L+ II+ + N L +D GRKPL A + FS G + Q
Sbjct: 309 --LLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAP---- 362
Query: 196 QYIPYITTLLYAASY---YGIGCLPNILVSELFPINVRCQASSCASVAL--AFGSFITTK 250
+ ++ L Y A++ +G C +L+SE+FP +R +A + A VA F++
Sbjct: 363 GIVALLSMLFYVAAFAMSWGPVCW--VLLSEIFPNAIRGKALAIA-VAAQWIANYFVSWT 419
Query: 251 FHILITKS-LGQH----VIFFIYSSVHFCSVVFNYFYLMETKQKTLAEIQE 296
F ++ S L H ++IY + + +F + ++ ETK KTL E++
Sbjct: 420 FPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEA 470
|
Length = 479 |
| >gnl|CDD|177155 MTH00092, ND3, NADH dehydrogenase subunit 3; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 9e-07
Identities = 21/37 (56%), Positives = 29/37 (78%)
Query: 309 KTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEI 345
K S FECGF+ + K + S+S+HFF I L+F+IFD+EI
Sbjct: 34 KVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEI 70
|
Length = 111 |
| >gnl|CDD|181448 PRK08489, PRK08489, NADH dehydrogenase subunit A; Validated | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 1e-05
Identities = 20/43 (46%), Positives = 32/43 (74%), Gaps = 3/43 (6%)
Query: 309 KTSPFECGFDPISKP-RISYSLHFFSIALIFLIFDIEITLIFP 350
K + +ECG +P+ +P RIS HF+ +AL+F++FD+EI +FP
Sbjct: 47 KLAIYECGPEPVKQPNRIS--SHFYIMALLFILFDVEIVFMFP 87
|
Length = 129 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 3e-04
Identities = 37/180 (20%), Positives = 61/180 (33%), Gaps = 12/180 (6%)
Query: 102 TLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQ---CILVFMIIMFLSNFLQAPL 158
L++A + F G ++TY L + + + +F + L L L
Sbjct: 177 LLLLALAFFLLSFGYYGLLTYLPLYL--QEVLGLSAAEAGLLLSLFGLGGILGALLGGLL 234
Query: 159 MDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPN 218
D LGR+ L L L GL L L + + LL
Sbjct: 235 SDRLGRRRLLLLIGLLLAAL----GLLLLA---LAPSLALLLVALLLLGFGLGFAFPALL 287
Query: 219 ILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSVVF 278
L SEL P R AS + + G + L+ + G +F I +++ + +
Sbjct: 288 TLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALL 347
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|181171 PRK07928, PRK07928, NADH dehydrogenase subunit A; Validated | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 3e-04
Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 303 KQLRREKTSPFECGFDPISKPRIS--YSLHFFSIALIFLIFDIEITLIFP 350
K+ R K +ECG +P +P + + ++ A++F++FDIEI ++P
Sbjct: 31 KRYNRAKLEAYECGIEPTPQPAGGGRFPVKYYLTAMLFIVFDIEIVFLYP 80
|
Length = 119 |
| >gnl|CDD|169084 PRK07756, PRK07756, NADH dehydrogenase subunit A; Validated | Back alignment and domain information |
|---|
Score = 37.0 bits (86), Expect = 0.003
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 307 REKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFP 350
K + +E G +P I + ++ AL+F+IFD+E ++P
Sbjct: 40 AAKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLYP 83
|
Length = 122 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 362 | |||
| KOG0569|consensus | 485 | 100.0 | ||
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.96 | |
| KOG0254|consensus | 513 | 99.96 | ||
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.95 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.95 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.94 | |
| KOG0253|consensus | 528 | 99.94 | ||
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.92 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.92 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.9 | |
| KOG0252|consensus | 538 | 99.85 | ||
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.85 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.83 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.82 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.82 | |
| KOG0255|consensus | 521 | 99.82 | ||
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.81 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.8 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.8 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.8 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.79 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.79 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.79 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.78 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.78 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.78 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.78 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.77 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.77 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.77 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.76 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.76 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.75 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.75 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.75 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.75 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.75 | |
| KOG2532|consensus | 466 | 99.73 | ||
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.73 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.73 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.73 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.72 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.72 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.72 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.71 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.7 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.7 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.7 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.69 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.69 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.67 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.67 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.67 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.67 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.67 | |
| KOG2533|consensus | 495 | 99.66 | ||
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.66 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.66 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.66 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.66 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.66 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.66 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.66 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.65 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.65 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.65 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.65 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.64 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.64 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.64 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.64 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.63 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.63 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.63 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.63 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.62 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.62 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.62 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.61 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.61 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.61 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.6 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.6 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.6 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.6 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.6 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.59 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.58 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.58 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.58 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.58 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.58 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.58 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.57 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.57 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.57 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.57 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.57 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.57 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.56 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.56 | |
| KOG1330|consensus | 493 | 99.56 | ||
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.56 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.55 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.54 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.53 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.53 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.53 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.53 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.52 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.52 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.52 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.51 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.51 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.51 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.51 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.51 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.51 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.5 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.5 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.5 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.5 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.5 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.5 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.5 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.49 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.49 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.49 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.48 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.48 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.48 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.48 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.48 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.47 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.46 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.46 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.46 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.46 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.45 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.45 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.44 | |
| KOG2615|consensus | 451 | 99.44 | ||
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.43 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.43 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.42 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.42 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.41 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.4 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.4 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.4 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.4 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.4 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.39 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.39 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.37 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.37 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.36 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.36 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.36 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.36 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.35 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.35 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.35 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.34 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.34 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.33 | |
| KOG2504|consensus | 509 | 99.32 | ||
| PRK11462 | 460 | putative transporter; Provisional | 99.32 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.31 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.31 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.3 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.3 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.29 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.29 | |
| KOG2532|consensus | 466 | 99.29 | ||
| KOG0255|consensus | 521 | 99.29 | ||
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.29 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.29 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.27 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.27 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.27 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.26 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.24 | |
| KOG0254|consensus | 513 | 99.24 | ||
| KOG3764|consensus | 464 | 99.24 | ||
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.22 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.21 | |
| KOG2533|consensus | 495 | 99.21 | ||
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.2 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.2 | |
| KOG2504|consensus | 509 | 99.19 | ||
| KOG0569|consensus | 485 | 99.19 | ||
| KOG0252|consensus | 538 | 99.18 | ||
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.18 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.17 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.16 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.13 | |
| KOG1330|consensus | 493 | 99.11 | ||
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.08 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.07 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.07 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.03 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.02 | |
| KOG4686|consensus | 459 | 99.0 | ||
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.99 | |
| KOG0253|consensus | 528 | 98.96 | ||
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 98.9 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.89 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.86 | |
| KOG2563|consensus | 480 | 98.81 | ||
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.8 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.75 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.74 | |
| KOG2816|consensus | 463 | 98.74 | ||
| KOG3764|consensus | 464 | 98.72 | ||
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 98.71 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.69 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.69 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 98.67 | |
| KOG2325|consensus | 488 | 98.67 | ||
| KOG3626|consensus | 735 | 98.65 | ||
| KOG2615|consensus | 451 | 98.62 | ||
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.6 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 98.55 | |
| KOG3762|consensus | 618 | 98.53 | ||
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.53 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.39 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.39 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.34 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 98.34 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.32 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 98.28 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 98.23 | |
| KOG4662|consensus | 122 | 98.21 | ||
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.19 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 98.17 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 98.17 | |
| KOG2816|consensus | 463 | 98.02 | ||
| MTH00092 | 111 | ND3 NADH dehydrogenase subunit 3; Provisional | 97.99 | |
| PRK06432 | 144 | NADH dehydrogenase subunit A; Validated | 97.99 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 97.97 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 97.93 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 97.91 | |
| MTH00113 | 114 | ND3 NADH dehydrogenase subunit 3; Provisional | 97.89 | |
| KOG2563|consensus | 480 | 97.87 | ||
| MTH00202 | 117 | ND3 NADH dehydrogenase subunit 3; Provisional | 97.86 | |
| CHL00022 | 120 | ndhC NADH dehydrogenase subunit 3 | 97.86 | |
| COG0838 | 123 | NuoA NADH:ubiquinone oxidoreductase subunit 3 (cha | 97.85 | |
| MTH00136 | 116 | ND3 NADH dehydrogenase subunit 3; Provisional | 97.85 | |
| MTH00030 | 123 | ND3 NADH dehydrogenase subunit 3; Provisional | 97.85 | |
| MTH00148 | 117 | ND3 NADH dehydrogenase subunit 3; Provisional | 97.84 | |
| MTH00055 | 118 | ND3 NADH dehydrogenase subunit 3; Provisional | 97.84 | |
| MTH00042 | 116 | ND3 NADH dehydrogenase subunit 3; Validated | 97.83 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 97.81 | |
| MTH00018 | 113 | ND3 NADH dehydrogenase subunit 3; Validated | 97.79 | |
| PRK07756 | 122 | NADH dehydrogenase subunit A; Validated | 97.78 | |
| PRK06602 | 121 | NADH:ubiquinone oxidoreductase subunit A; Validate | 97.77 | |
| MTH00203 | 112 | ND3 NADH dehydrogenase subunit 3; Provisional | 97.77 | |
| MTH00106 | 115 | ND3 NADH dehydrogenase subunit 3; Provisional | 97.77 | |
| PRK06073 | 124 | NADH dehydrogenase subunit A; Validated | 97.76 | |
| MTH00012 | 117 | ND3 NADH dehydrogenase subunit 3; Validated | 97.75 | |
| MTH00069 | 114 | ND3 NADH dehydrogenase subunit 3; Provisional | 97.75 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 97.75 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 97.73 | |
| MTH00161 | 113 | ND3 NADH dehydrogenase subunit 3; Provisional | 97.71 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.68 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 97.66 | |
| PRK07928 | 119 | NADH dehydrogenase subunit A; Validated | 97.65 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 97.6 | |
| PRK08489 | 129 | NADH dehydrogenase subunit A; Validated | 97.52 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 97.5 | |
| PF00507 | 102 | Oxidored_q4: NADH-ubiquinone/plastoquinone oxidore | 97.44 | |
| MTH00060 | 116 | ND3 NADH dehydrogenase subunit 3; Provisional | 97.43 | |
| KOG3626|consensus | 735 | 97.37 | ||
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 97.37 | |
| KOG4686|consensus | 459 | 97.19 | ||
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 97.11 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 97.0 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 96.85 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 96.82 | |
| KOG3098|consensus | 461 | 96.81 | ||
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 96.72 | |
| KOG2325|consensus | 488 | 96.71 | ||
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 96.61 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 96.53 | |
| KOG4332|consensus | 454 | 96.43 | ||
| KOG1237|consensus | 571 | 96.38 | ||
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 96.32 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 96.29 | |
| KOG0637|consensus | 498 | 96.27 | ||
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 95.93 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 95.85 | |
| KOG3810|consensus | 433 | 95.82 | ||
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 95.34 | |
| KOG3762|consensus | 618 | 95.11 | ||
| KOG3098|consensus | 461 | 94.32 | ||
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 94.27 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 93.93 | |
| KOG1479|consensus | 406 | 93.41 | ||
| KOG1479|consensus | 406 | 93.04 | ||
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 91.99 | |
| KOG3574|consensus | 510 | 91.55 | ||
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 89.78 | |
| KOG3574|consensus | 510 | 88.71 | ||
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 87.87 | |
| PRK10697 | 118 | DNA-binding transcriptional activator PspC; Provis | 87.75 | |
| KOG0637|consensus | 498 | 86.39 | ||
| KOG2881|consensus | 294 | 84.38 | ||
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 83.09 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 82.79 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 82.31 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 81.11 |
| >KOG0569|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=261.57 Aligned_cols=286 Identities=24% Similarity=0.377 Sum_probs=246.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhccCCChHHHHh-cCCHHHHHHHHHhHcCCcccHHHHHHHHHHH-Hhh--ccccccc
Q psy15226 12 NHVSYNSLNIALSILPVIFFILFSFVPETPHFHAA-KNNLKKTEKSLKWYRGNKKDVMEEMNSIMDK-TQE--DLKSKTG 87 (362)
Q Consensus 12 ~~~~Wr~~f~~~~~~~~~~~~~~~~lpesp~~l~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~ 87 (362)
..-.|++.+.+..+++++..+...++|||||||.. |+|.+||++.++++++++++ +++.++.+++ .++ +++++.+
T Consensus 179 t~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~-~~~~e~~~~e~~~~~~~~~~~~s 257 (485)
T KOG0569|consen 179 TEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDV-EAEIEEMLREIEEEELEKKKQIS 257 (485)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcc-hhHHHHHHHHHHHhccccccCCc
Confidence 33479999999999999999999999999999987 89999999999999999873 3333332222 222 2236678
Q ss_pred hhhhccCcchhHHHHHHHHHHHHHhhhhHHHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchh
Q psy15226 88 YLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPL 167 (362)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~ 167 (362)
++++++++..++...+.+......++++.+....|...++++.|++..++.+.+...++...+.++++.++.||.|||++
T Consensus 258 l~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpL 337 (485)
T KOG0569|consen 258 LRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPL 337 (485)
T ss_pred HHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHhHHHHHHHHHHHHHHhcCC-CCcchHHHHHHHHHHHHh-hcccccchhhcccCCCcchhhhhhHHHHHHHHHHH
Q psy15226 168 SCFSAALGCLLTFSTGLFYLYQGEL-PNFQYIPYITTLLYAASY-YGIGCLPNILVSELFPINVRCQASSCASVALAFGS 245 (362)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~ 245 (362)
++.+..++.+..+.+.......... ....+..+.+.+++...+ .|.+|++|-+.+|++|++.|+.+.++..+.+++..
T Consensus 338 ll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~ 417 (485)
T KOG0569|consen 338 LLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSN 417 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHH
Confidence 9999999999888877654443211 112233456677788888 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhchhHHHHHHHHhhHhHHhhhheeeccCCCCCHHHHHHHHh
Q psy15226 246 FITTKFHILITKSLGQHVIFFIYSSVHFCSVVFNYFYLMETKQKTLAEIQESIM 299 (362)
Q Consensus 246 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~ 299 (362)
++....++.+.+..|. ..|+++.+.+.+..+..++.+||||+|+.+|+.++.+
T Consensus 418 fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~ 470 (485)
T KOG0569|consen 418 FIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELE 470 (485)
T ss_pred HHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHH
Confidence 9999999999998887 5788899999999999999999999999999988887
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.7e-28 Score=222.94 Aligned_cols=273 Identities=15% Similarity=0.158 Sum_probs=178.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhccCCChHHHHhcCCHH-HHHHHHHhHcCCccc-HHHHHHHHHHHHhhccccccchhhh
Q psy15226 14 VSYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLK-KTEKSLKWYRGNKKD-VMEEMNSIMDKTQEDLKSKTGYLEL 91 (362)
Q Consensus 14 ~~Wr~~f~~~~~~~~~~~~~~~~lpesp~~l~~~~~~~-~a~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (362)
++||++|.+.++++++.++..+++||||||+..++|.+ ++++.+++..+.+.+ ..++.++.++ +++..+.+++++
T Consensus 201 ~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l 277 (502)
T TIGR00887 201 YMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSAVLQVKIEAEPDEVEKAST---AVEVPKASWSDF 277 (502)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHHHhccccccCcccccchhc---cccchhhhHHHH
Confidence 37999999999999988888888999999999888874 477777766543321 1111111111 111122357777
Q ss_pred ccCc---chhHHHHHHHHHHHHHhhhhHHHHHHhHHHHhhhcCCCCCchhH------------HHHHHHHHHHHHHHHHH
Q psy15226 92 LTNK---SNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQ------------CILVFMIIMFLSNFLQA 156 (362)
Q Consensus 92 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~------------~~~~~~~~~~~~~~~~g 156 (362)
++++ +.++..+......+. ....++....+.|.++++.|++..+... ...+..++.+++.++++
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~ 356 (502)
T TIGR00887 278 FTHFFKWRHGKHLLGTAGSWFL-LDIAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTV 356 (502)
T ss_pred HHHHhhhHHHHHHHHHHHHHHH-HHHHHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7632 222222222222222 2223456667789988888876442211 23344456677889999
Q ss_pred HHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHh-hcccccchhhcccCCCcchhhhhhH
Q psy15226 157 PLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASY-YGIGCLPNILVSELFPINVRCQASS 235 (362)
Q Consensus 157 ~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~~p~~~r~~~~~ 235 (362)
+++||+|||++++.+..+.+++..++...... ................+ .+..+..+.+.+|.+|++.|+++.|
T Consensus 357 ~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g 431 (502)
T TIGR00887 357 FLVDIIGRKPIQLMGFFILTVLFFVLGFAYNH-----LSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHG 431 (502)
T ss_pred HHhhhhcchhHHHHHHHHHHHHHHHHHHHHHh-----cchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHH
Confidence 99999999999888887777776655442110 01111111122222223 4556677788999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh----------hchhHHHHHHHHhhHhHHhhhheeeccCCCCCHHHHHH
Q psy15226 236 CASVALAFGSFITTKFHILITKS----------LGQHVIFFIYSSVHFCSVVFNYFYLMETKQKTLAEIQE 296 (362)
Q Consensus 236 ~~~~~~~ig~~~~~~~~~~~~~~----------~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~ 296 (362)
+.+.++++++++++.+.+.+.+. .++...+.+++++++++.+. ++++|||++++.||+++
T Consensus 432 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~-~~~lpEt~~~~leei~~ 501 (502)
T TIGR00887 432 ISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILF-TLLIPETKGKSLEELSG 501 (502)
T ss_pred HHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHH-heEeccCCCCCHHhhhC
Confidence 99999999999999999998874 34455777888777777554 46789999999877654
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >KOG0254|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-26 Score=214.97 Aligned_cols=296 Identities=26% Similarity=0.361 Sum_probs=236.4
Q ss_pred chhhHHHHhhhhh-----hhHHHHHHHHHHHHHHHHHhhccCCChHHHHhcCCHHHHHHHHHhHcCC-cccHHHHHHHHH
Q psy15226 2 VGTLAILLIGNHV-----SYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRGN-KKDVMEEMNSIM 75 (362)
Q Consensus 2 ~G~~~~~~l~~~~-----~Wr~~f~~~~~~~~~~~~~~~~lpesp~~l~~~~~~~~a~~~l~~~~~~-~~~~~~~~~~~~ 75 (362)
+|.++++.++... +||..+.+..+++++..+..+++||||||+.++|+.+++++.++++++. +.+.+.+.++.+
T Consensus 189 ~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~ 268 (513)
T KOG0254|consen 189 IGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLK 268 (513)
T ss_pred HHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHH
Confidence 4666676666544 7999999999999999888777999999999999999999999999993 333555555544
Q ss_pred HHHh-hc--cccccchhhhccCcchhHHHHHHHHHHHHHhhhhHHHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHH
Q psy15226 76 DKTQ-ED--LKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSN 152 (362)
Q Consensus 76 ~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 152 (362)
.... +. .+.+..++++++ +..+++..+++.+..++++++++...+|.+.+++..|.+... .....+.++...++.
T Consensus 269 ~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t 346 (513)
T KOG0254|consen 269 IKLLVEAEVAEGKASWGELFS-PKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGT 346 (513)
T ss_pred HHHHHhhhcccccccHHHhcC-cchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHH
Confidence 2111 11 122223566666 578889999999999999999999999999999998887333 777888889999999
Q ss_pred HHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcC----CCCcchHHHHHHHHHHHHh-hcccccchhhcccCCCc
Q psy15226 153 FLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGE----LPNFQYIPYITTLLYAASY-YGIGCLPNILVSELFPI 227 (362)
Q Consensus 153 ~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~~p~ 227 (362)
.++..+.||+|||+.++.+...+.++.++++........ .....+..+....++...+ .+.++++|.+.+|.+|.
T Consensus 347 ~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~ 426 (513)
T KOG0254|consen 347 LVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPL 426 (513)
T ss_pred HHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcH
Confidence 999999999999999999999999999988876555421 1133455666677777777 89999999999999999
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhHhHHh-hhheeeccCCCCCHHHHHHHHh
Q psy15226 228 NVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSVV-FNYFYLMETKQKTLAEIQESIM 299 (362)
Q Consensus 228 ~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~~e~~~~~~~~~~~~~~ 299 (362)
+.|+.+.++....+++...+.......+.+..+....|..++..+.+... ..+++.|||++++.+|+++.+.
T Consensus 427 ~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~~~ 499 (513)
T KOG0254|consen 427 RLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINELFE 499 (513)
T ss_pred hHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHHHH
Confidence 99999999999999999888877777766655434567777766666666 6778999999999999988776
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-25 Score=206.98 Aligned_cols=277 Identities=21% Similarity=0.312 Sum_probs=195.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhccCCChHHHHhcCCHHHHHHHHHhHcCCcccHHHHHHHHHHHHhhccccccchhhhc
Q psy15226 13 HVSYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGYLELL 92 (362)
Q Consensus 13 ~~~Wr~~f~~~~~~~~~~~~~~~~lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (362)
.+|||++|++.++++++..+..+++||+|+|+..+++.+++++..++..+.++ .+...++.++...++.. ..+..+
T Consensus 190 ~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~ 265 (479)
T PRK10077 190 TDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTL-ATQALQEIKHSLDHGRK---TGGKLL 265 (479)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChh-HHHHHHHHHHHHHHhhh---hhhhhc
Confidence 35899999999998888777777799999999888998888888877765543 22222222221111100 111112
Q ss_pred cCcchhHHHHHHHHHHHHHhhhhHHHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhh
Q psy15226 93 TNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSA 172 (362)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~ 172 (362)
. .........+......+..+++...++.|.+.++.|.+.....+.....++..+++.+++++++||+|||++++.+.
T Consensus 266 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~ 343 (479)
T PRK10077 266 M--FGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGA 343 (479)
T ss_pred c--hhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhH
Confidence 1 11122222333334444445566677889988888888666777777888999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHh-hcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHH
Q psy15226 173 ALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASY-YGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKF 251 (362)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~ 251 (362)
.+.+++.+.+..... ..............++.++ ..+.+..+.+++|.+|++.|+++.|+.+..++++.++++.+
T Consensus 344 ~~~~v~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~ 419 (479)
T PRK10077 344 LGMAIGMFSLGTAFY----TQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWT 419 (479)
T ss_pred HHHHHHHHHHHHHHh----cCcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888777654221 1112223333344444444 45557777999999999999999999999999999999877
Q ss_pred HHHHH------HhhchhHHHHHHHHhhHhHHhhhheeeccCCCCCHHHHHHHHh
Q psy15226 252 HILIT------KSLGQHVIFFIYSSVHFCSVVFNYFYLMETKQKTLAEIQESIM 299 (362)
Q Consensus 252 ~~~~~------~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~ 299 (362)
.+.+. ++.+++..|++.+++++++.++.+++.||+++++.+|.++..+
T Consensus 420 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 473 (479)
T PRK10077 420 FPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEALWE 473 (479)
T ss_pred hHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHh
Confidence 76544 4677888888888887777777777889999999988877765
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-32 Score=250.15 Aligned_cols=278 Identities=27% Similarity=0.462 Sum_probs=214.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhhccCCChHHHHhcCCHHHHHHHHHhHcCCcccHHHHHHHHHHHHhhccccccchhhhccC
Q psy15226 15 SYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGYLELLTN 94 (362)
Q Consensus 15 ~Wr~~f~~~~~~~~~~~~~~~~lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (362)
+||+.+.+.++++++..+...++||||||+.+|+|.|||++.++++++++. .+++.++..++.++.++.+.++++++++
T Consensus 169 ~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 247 (451)
T PF00083_consen 169 GWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEI-EDEEIEEIKAEKKESQESKASWRDLFRN 247 (451)
T ss_pred cccccccccccccccccccccccccccceeccccccccccccccccccccc-ccccccccccccccccccceeeeecccc
Confidence 499999999999998888888899999999999999999999999776654 3333333333333332333678888887
Q ss_pred cchhHHHHHHHHHHHHHhhhhHHHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHh
Q psy15226 95 KSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAAL 174 (362)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~ 174 (362)
++.+++.+..+.+.....+.+++....|.+.+.++.+.+.. ........+...++.+++..+.||+|||++++.+..+
T Consensus 248 ~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~ 325 (451)
T PF00083_consen 248 KKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLL 325 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccc
Confidence 66677777777777777777777778888888888787744 4555666677888888889999999999999999888
Q ss_pred HHHHHHHHHHHHHHhcCCCC---cchHHHHHHHHHHHHh-hcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHH
Q psy15226 175 GCLLTFSTGLFYLYQGELPN---FQYIPYITTLLYAASY-YGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTK 250 (362)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~ 250 (362)
.+++.+.++...... ... .....+....++...+ .++++..+.+.+|.+|++.|+++.++....+++++++++.
T Consensus 326 ~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~ 403 (451)
T PF00083_consen 326 MAICSLILGIIFFLG--VSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPF 403 (451)
T ss_pred ccccccccccccccc--cccccccccccceeeeecccccccccccccccccccccccccccccccccccccccccccccc
Confidence 888877764101110 111 1233333344444455 6788888899999999999999999999999999999999
Q ss_pred HHHHHHHhhchhHHHHHHHHhhHhHHhhhheeeccCCCCCHHHHHHH
Q psy15226 251 FHILITKSLGQHVIFFIYSSVHFCSVVFNYFYLMETKQKTLAEIQES 297 (362)
Q Consensus 251 ~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~ 297 (362)
+.+.+.+..+....+.+.++++++..++.++++|||++++.+|++++
T Consensus 404 ~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~~ 450 (451)
T PF00083_consen 404 LFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQEM 450 (451)
T ss_pred ccccccccccccccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHhh
Confidence 98888877774457778888888888888899999999999999875
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.8e-25 Score=208.79 Aligned_cols=264 Identities=16% Similarity=0.165 Sum_probs=184.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhhccCCChHHHHhcCCHHHHHHHHHhHcCCccc----HHHHH--HHHHHHHh-----h-cc
Q psy15226 15 SYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKD----VMEEM--NSIMDKTQ-----E-DL 82 (362)
Q Consensus 15 ~Wr~~f~~~~~~~~~~~~~~~~lpesp~~l~~~~~~~~a~~~l~~~~~~~~~----~~~~~--~~~~~~~~-----~-~~ 82 (362)
+||+++++.+++.++..++.+++||||+|+..++|.+++.+.++++++.+.. ..+.+ ++.+.... + +.
T Consensus 332 gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (742)
T TIGR01299 332 SWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKTIHQEDELIEIES 411 (742)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHHHhhhhhhhhcccc
Confidence 6999999999998888888888999999999999999999999999876531 11111 11111000 0 00
Q ss_pred cc------------------ccchhhhccCcchhHHHHHHHHHHHHHhhhhHHHHHHhHHHHhhhc--------------
Q psy15226 83 KS------------------KTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKL-------------- 130 (362)
Q Consensus 83 ~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 130 (362)
.. ..+++++++ +.+++++++....++...+ +++++..|+|.++++.
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~lf~-~~~~~~tl~l~~~wf~~~~-~yygl~~w~P~~~~~~~~~~~~~~~~~~~~ 489 (742)
T TIGR01299 412 DTGTWYQRCFVRALSEGGGIWGNFLRCFN-PEVREITIKLMGVWFTLSF-GYYGLSVWFPDMIKHLQADDYAALTKNFPG 489 (742)
T ss_pred cccchhhcchhhhhhhhhhHHHHHHHHcC-ccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 00 013455665 4667777777777766555 5789999999875431
Q ss_pred ----------------------------CC-----C---------------C----------------------------
Q psy15226 131 ----------------------------DN-----A---------------Y---------------------------- 134 (362)
Q Consensus 131 ----------------------------g~-----~---------------~---------------------------- 134 (362)
|+ + .
T Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~ 569 (742)
T TIGR01299 490 DKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFENTDFEEYKFIDS 569 (742)
T ss_pred cchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchhhhhccccchhhhhhhhh
Confidence 00 0 0
Q ss_pred -------------------------CchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHh
Q psy15226 135 -------------------------FGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQ 189 (362)
Q Consensus 135 -------------------------~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~ 189 (362)
........+.+++.+++.+++|+++||+|||++++.+.++.+++.+++++
T Consensus 570 ~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~----- 644 (742)
T TIGR01299 570 EFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSF----- 644 (742)
T ss_pred hhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH-----
Confidence 00123355667889999999999999999999999998888888777655
Q ss_pred cCCCCcchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHH
Q psy15226 190 GELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYS 269 (362)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~~~~ 269 (362)
.. +....++..++.+++..+..+..+++++|++|++.|++++|+.+..+.+|++++|.+.+.+.+. +...++++.+
T Consensus 645 --~~-s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a 720 (742)
T TIGR01299 645 --GN-SESAMIALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFAS 720 (742)
T ss_pred --Hc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHH
Confidence 11 2222333333333333333345568999999999999999999999999999999999888764 4556777777
Q ss_pred HhhHhHHhhhheeeccCCCCC
Q psy15226 270 SVHFCSVVFNYFYLMETKQKT 290 (362)
Q Consensus 270 ~~~~i~~~~~~~~~~e~~~~~ 290 (362)
++.+++.++. .++|||+++.
T Consensus 721 ~~lll~~ll~-~~LPET~~~~ 740 (742)
T TIGR01299 721 AALACGGLLA-LKLPDTRGQV 740 (742)
T ss_pred HHHHHHHHHH-HhCCCCcccc
Confidence 7777765555 4569998764
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >KOG0253|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.6e-25 Score=184.41 Aligned_cols=274 Identities=16% Similarity=0.184 Sum_probs=193.4
Q ss_pred hHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhccCCChHHHHhcCCHHHHHHHHHhHcCCcccH----------HHHHHHH
Q psy15226 5 LAILLIGNHVSYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDV----------MEEMNSI 74 (362)
Q Consensus 5 ~~~~~l~~~~~Wr~~f~~~~~~~~~~~~~~~~lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~----------~~~~~~~ 74 (362)
.++..+...+||||.....+.+..+.+.+.+++|||||++..+|+.+||.+.++++.+.|+.. ..+.++.
T Consensus 218 ~law~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e 297 (528)
T KOG0253|consen 218 LLAWGVMSNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQE 297 (528)
T ss_pred HHHHHHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhh
Confidence 445555677799999999998888888888899999999999999999999999998887530 0011110
Q ss_pred H----H-HHhhccccccchhhhccCcchhHHHHHHHHHHHHHhhhhHHHHHHhHHHHhhhcC------------------
Q psy15226 75 M----D-KTQEDLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLD------------------ 131 (362)
Q Consensus 75 ~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g------------------ 131 (362)
+ + ..+..++.+.+..+++. |+.++..+....+++...+. +++.......+.+...
T Consensus 298 ~~~~~~~~~~a~ke~rg~~~nLls-p~lrkttlllw~iwfgnafs-yyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~ 375 (528)
T KOG0253|consen 298 ESDLDDSKSSAAKEVRGGTTNLLS-PKLRKTTLLLWRIWFGNAFS-YYGSVLLTTELFQSGDACPLYNRFLPTELETRAN 375 (528)
T ss_pred hhchhhhhhccccccccchHhhcC-hHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHhccCccccchhcchhHHHhhhc
Confidence 0 0 00111233445566665 57777777777777766655 3444444333333211
Q ss_pred --CCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHH
Q psy15226 132 --NAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAAS 209 (362)
Q Consensus 132 --~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (362)
.+......-..+..+..+.|.++.+++.||+|||+.+....++++++.+.... ...........+..-.+
T Consensus 376 c~~s~~~dYrdllitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~--------c~~rn~~tvllf~araf 447 (528)
T KOG0253|consen 376 CPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTT--------CKTRNAYTVLLFTARAF 447 (528)
T ss_pred CCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHH--------hcCcchhHHHHHHHHHH
Confidence 11122234566778899999999999999999999999999999988877654 22333334444444444
Q ss_pred h-hcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhHhHHhhhheeeccCCC
Q psy15226 210 Y-YGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFNYFYLMETKQ 288 (362)
Q Consensus 210 ~-~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~ 288 (362)
. +++. ..|+|..|++|+..|+++.|.+...+++|+++.|.+. +........+..+++.+++++.+...++--||++
T Consensus 448 isg~fq-vaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiEtkG 524 (528)
T KOG0253|consen 448 ISGAFQ-VAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFPIETKG 524 (528)
T ss_pred Hhchhe-EEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheeeeeccCC
Confidence 4 4554 4469999999999999999999999999999999998 3333445567778888888887777666678988
Q ss_pred CCH
Q psy15226 289 KTL 291 (362)
Q Consensus 289 ~~~ 291 (362)
|+.
T Consensus 525 R~l 527 (528)
T KOG0253|consen 525 RSL 527 (528)
T ss_pred CCC
Confidence 863
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.2e-23 Score=190.04 Aligned_cols=290 Identities=25% Similarity=0.365 Sum_probs=196.5
Q ss_pred chhhHHHHhh-------hhhhhHHHHHHHHHHHHHHHHHhhccCCChHHHHhcCCHHHHHHHHHhHcCCcccHHHHHH--
Q psy15226 2 VGTLAILLIG-------NHVSYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMN-- 72 (362)
Q Consensus 2 ~G~~~~~~l~-------~~~~Wr~~f~~~~~~~~~~~~~~~~lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~-- 72 (362)
+|..+++.++ ...+||+.|++.++..++..+..+++||+|+++..+++.+++++..++....+++.....+
T Consensus 174 ~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (481)
T TIGR00879 174 FGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDEL 253 (481)
T ss_pred HHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHH
Confidence 3555555555 4569999999988877777777777999999988888877777766665544332111111
Q ss_pred -HHHHHHh-hccccccchhhhccCcc-hhHHHHHHHHHHHHHhhhhHHHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHH
Q psy15226 73 -SIMDKTQ-EDLKSKTGYLELLTNKS-NRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMF 149 (362)
Q Consensus 73 -~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 149 (362)
..+.... +.+..+..+++.++..+ ..++.+.......+....+......+.|.+.++.|++..+.........++.+
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 333 (481)
T TIGR00879 254 ELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNF 333 (481)
T ss_pred HHHHHHHHHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence 1111100 01111122333333211 22344444444444444444556778888888889987777788888999999
Q ss_pred HHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCC---CcchHHHHHHHHHHHHh-hcccccchhhcccCC
Q psy15226 150 LSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELP---NFQYIPYITTLLYAASY-YGIGCLPNILVSELF 225 (362)
Q Consensus 150 ~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~~ 225 (362)
++.+++|+++||+|||+.+..+..+.+++.+.+....... ... ......+....++..++ .+..+..+.++.|.+
T Consensus 334 ~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (481)
T TIGR00879 334 AFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASF-VTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIF 412 (481)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcc-cCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccC
Confidence 9999999999999999998888777777766655321111 010 01233333334444444 556677767889999
Q ss_pred CcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhHhHHhhhheeeccCCCCCHH
Q psy15226 226 PINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFNYFYLMETKQKTLA 292 (362)
Q Consensus 226 p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~ 292 (362)
|++.|+++.++.+...++|+++++.+.+.+.++.+|+..|++.+++++++.++.+++.||+++++.+
T Consensus 413 p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~ 479 (481)
T TIGR00879 413 PLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLE 479 (481)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCCCCChh
Confidence 9999999999999999999999999999999988999889998888888877777778888776543
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.9e-23 Score=192.22 Aligned_cols=273 Identities=17% Similarity=0.230 Sum_probs=178.5
Q ss_pred hhhHHHHhhhhh-hhHHHHHHHHHHHHHHHHHhhccCCChHHHHhcCCHHHHHHHHHhHcCCccc-HHHHHHHHH-HHHh
Q psy15226 3 GTLAILLIGNHV-SYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKD-VMEEMNSIM-DKTQ 79 (362)
Q Consensus 3 G~~~~~~l~~~~-~Wr~~f~~~~~~~~~~~~~~~~lpesp~~l~~~~~~~~a~~~l~~~~~~~~~-~~~~~~~~~-~~~~ 79 (362)
|.+++..++... +||+.|++.+++.++..+..+++||||+|+..+++.+++++.+++..+.++. ...+..+.+ ++..
T Consensus 228 g~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 307 (505)
T TIGR00898 228 GLVLLPLVAYFIPDWRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDL 307 (505)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhh
Confidence 334444443322 6999999999999888777777999999999999999999988887654432 111111111 1111
Q ss_pred hccccccchhhhccCcchhHHHHHHHHHHHHHhhhhHHHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHh
Q psy15226 80 EDLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLM 159 (362)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 159 (362)
+++.++.+++++++++..++..+.....++.... .++. .+......+.+ ........++..+++.++.++++
T Consensus 308 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~l~ 379 (505)
T TIGR00898 308 SSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAF-SYYG----LVLDLGNLGGN---IYLDLFISGLVELPAKLITLLLI 379 (505)
T ss_pred hhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHH-HHHH----HhccccccCCC---hHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112235678889887666555544443332211 1122 22223333333 34555667788899999999999
Q ss_pred hhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHH
Q psy15226 160 DILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASV 239 (362)
Q Consensus 160 dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~ 239 (362)
||+|||+.+..+.++.+++.+.+.. ..............+...+.....+..+.+.+|.+|++.|++++|+.+.
T Consensus 380 dr~grr~~~~~~~~~~~~~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~ 453 (505)
T TIGR00898 380 DRLGRRYTMAASLLLAGVALLLLLF------VPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCST 453 (505)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHH------cCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHH
Confidence 9999999999888887777766544 1112222222323333333333334555889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhHhHHhhhheeeccCCCCCHH
Q psy15226 240 ALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFNYFYLMETKQKTLA 292 (362)
Q Consensus 240 ~~~ig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~ 292 (362)
...+|++++|.+.+ + +..++..++.+++++.+++.++. +++|||++++++
T Consensus 454 ~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~~~~~~~~~~~-~~lpet~~~~l~ 503 (505)
T TIGR00898 454 MARVGSIISPFLVY-L-GEKWLFLPLVLFGGLALLAGILT-LFLPETKGVPLP 503 (505)
T ss_pred HHHHHHHHHhHHHH-H-HHHHHhhHHHHHHHHHHHHHHHH-HcCcCCCCCCCC
Confidence 99999999999988 3 44566678888888777775555 578999887643
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1e-21 Score=181.47 Aligned_cols=246 Identities=16% Similarity=0.177 Sum_probs=152.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhccCCChHHHHhcCCHHHHHHHHHhHcCCcccHHHHHHHHHHHHhhccccccchhhhc
Q psy15226 13 HVSYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGYLELL 92 (362)
Q Consensus 13 ~~~Wr~~f~~~~~~~~~~~~~~~~lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (362)
.+|||++|++.++++++..++..++||||+|...+++.++..+ +. .++.++.++++++
T Consensus 188 ~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~--------~~--------------~~~~~~~~~~~~~ 245 (490)
T PRK10642 188 DWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGDR--------EG--------------LQDGPKVSFKEIA 245 (490)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhcc--------cc--------------ccccccCCHHHHH
Confidence 4699999999888777666666679999998643322111000 00 0011233566666
Q ss_pred cCcchhHHHHHHHHHHHHHhhhhHHHHHHhHHHHhhh-cCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhh
Q psy15226 93 TNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPK-LDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFS 171 (362)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~ 171 (362)
+ +.++.........+. ....++....|.|.++++ .|++..+.........++..++.++.|+++||+|||+.+..+
T Consensus 246 ~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~ 322 (490)
T PRK10642 246 T--KHWRSLLTCIGLVIA-TNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILG 322 (490)
T ss_pred H--HhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 5 233444433333222 223456777889998865 488766666677777888999999999999999999988777
Q ss_pred hHhHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHh-hcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHH
Q psy15226 172 AALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASY-YGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTK 250 (362)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~ 250 (362)
.+...++...+... . ........+....+.+.+. ...+.. ..+..|.+|++.|+++.|+.+....+++.++|.
T Consensus 323 ~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~g~~~~~~~g~~-~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~ 396 (490)
T PRK10642 323 SVALFVLAIPAFIL--I---NSNVIGLIFAGLLMLAVILNCFTGVM-ASTLPAMFPTHIRYSALAAAFNISVLVAGLTPT 396 (490)
T ss_pred HHHHHHHHHHHHHH--H---hCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHCCCccchHHHHHHHHHHHHHHHHHHH
Confidence 65444333221110 0 1112222222333333332 233333 367889999999999999877777788899999
Q ss_pred HHHHHHHhhc-hhHHHHHHHHhhHhHHhhhheeeccCCCCC
Q psy15226 251 FHILITKSLG-QHVIFFIYSSVHFCSVVFNYFYLMETKQKT 290 (362)
Q Consensus 251 ~~~~~~~~~g-~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~ 290 (362)
+.+++.+..+ |+.++++..+.++++.+.. ++.||++++.
T Consensus 397 i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~-~~~pes~~~~ 436 (490)
T PRK10642 397 LAAWLVESTQNLMMPAYYLMVVAVIGLITG-VTMKETANRP 436 (490)
T ss_pred HHHHHHHHhCCchHHHHHHHHHHHHHHHHH-HHhccccCCC
Confidence 9998887654 5666666555555554444 4569986543
|
|
| >KOG0252|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.9e-21 Score=165.15 Aligned_cols=272 Identities=13% Similarity=0.160 Sum_probs=183.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhhccCCChHHHHhc-CCHHHHHHHHHhHcCCcccHHHHHHHHHHHHhhccccccc---hhh
Q psy15226 15 SYNSLNIALSILPVIFFILFSFVPETPHFHAAK-NNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTG---YLE 90 (362)
Q Consensus 15 ~Wr~~f~~~~~~~~~~~~~~~~lpesp~~l~~~-~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 90 (362)
=||..|.+.+++++..++.++.+|||+||-... ++.+.|. ++..+... .++++.++.....+.++.+ +..
T Consensus 223 vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~---~d~~k~~~---~~~~~~~~~~~~~~~~~~~~~~F~~ 296 (538)
T KOG0252|consen 223 VWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAA---GDMKKVLS---VDIEAESTAESDVPPPSNSFGLFSR 296 (538)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhh---hccccccc---cccchhhccccCCCCcccccchHHH
Confidence 399999999999999999999999999986433 3333333 22222111 1111111111111111111 223
Q ss_pred hccCcchhHHHHHHHHHHHHHhhhhHHHHHHhHHHHhhhcCCCCCchhH---------HHHHHHHHHHHHHHHHHHHhhh
Q psy15226 91 LLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQ---------CILVFMIIMFLSNFLQAPLMDI 161 (362)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---------~~~~~~~~~~~~~~~~g~l~dr 161 (362)
.+..+ +-+.++..+..++..... ++....+...++++.|+.+.+... -..+..+..++|..+...++|+
T Consensus 297 ~f~~~-hg~~Llgt~~~WFllDia-fy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~ 374 (538)
T KOG0252|consen 297 LFLRW-HGKHLLGTAGTWFLLDIA-FYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDI 374 (538)
T ss_pred HHHHH-HHHHHHHHHHHHHhhhhh-hhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeeh
Confidence 33322 345666666666665543 577788888888877776544433 1222333444577778889999
Q ss_pred cCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHh-hcccccchhhcccCCCcchhhhhhHHHHHH
Q psy15226 162 LGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASY-YGIGCLPNILVSELFPINVRCQASSCASVA 240 (362)
Q Consensus 162 ~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~ 240 (362)
+|||+..+.+++++.+..+.++..+. ........+++..+..+.. .+.+.....+.+|.+|++.|+++.|+....
T Consensus 375 iGRk~iq~~GF~~~~i~~~~~~~~y~----~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~ 450 (538)
T KOG0252|consen 375 IGRKYIQLMGFFIMTIFFFVIAGPYN----QLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAAS 450 (538)
T ss_pred hhhHHHHHhhHHHHHHHHHHHcCCcc----cccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHh
Confidence 99999999999999998888776211 0111122223333334444 677777778899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH-----hhchhHHHHHHHHhhHhHHhhhheeeccCCCCCHHHHHHHHh
Q psy15226 241 LAFGSFITTKFHILITK-----SLGQHVIFFIYSSVHFCSVVFNYFYLMETKQKTLAEIQESIM 299 (362)
Q Consensus 241 ~~ig~~~~~~~~~~~~~-----~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~ 299 (362)
+.+|++++...+.++.+ ..|.+..+++++.++.++.++. +++|||++++++|++++.+
T Consensus 451 GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T-~l~pEtk~~~leei~~e~~ 513 (538)
T KOG0252|consen 451 GKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFT-LLIPETKGKSLEEISNEEE 513 (538)
T ss_pred ccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHhee-EEeecccccCHHHhcChhh
Confidence 99999999999999988 7788899999999999886665 7788999999998865544
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.7e-20 Score=158.33 Aligned_cols=253 Identities=13% Similarity=0.132 Sum_probs=161.1
Q ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHhhc-cCCChHHHHhcCCHHHHHHHHHhHcCCcccHHHHHHHHHHHHhhccccccc
Q psy15226 9 LIGNHVSYNSLNIALSILPVIFFILFSF-VPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTG 87 (362)
Q Consensus 9 ~l~~~~~Wr~~f~~~~~~~~~~~~~~~~-lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (362)
.+..+.+||..|++.++++++..+..++ ++|+|+- .|- ..+++.+++.. |.+ ++ +++.+..+
T Consensus 177 ~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs---~GL-----P~ie~~~~d~~----e~~--~~---~~~~~~ls 239 (448)
T COG2271 177 FFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQS---EGL-----PPIEEYRGDPL----EIY--EE---EKENEGLT 239 (448)
T ss_pred HHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCccc---cCC-----CCHHHhhcCch----hhh--hh---hccCCCcc
Confidence 3345559999999999999998886665 8999952 111 11111111111 100 00 11111133
Q ss_pred hhhhccCcchhHHHHHHHHHHHHHhhhhHHHHHHhHHHHhhhc-CCCCCchhHHHHHHHHHHHHHHHHHHHHhhhc--CC
Q psy15226 88 YLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKL-DNAYFGPDQCILVFMIIMFLSNFLQAPLMDIL--GR 164 (362)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--gr 164 (362)
.++.+.+...+.+.++...+..+.....-+++..|.|.|+.+. |++..++.+..+.+-.++++|++++|+++||. ||
T Consensus 240 ~~~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgr 319 (448)
T COG2271 240 AWQIFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGR 319 (448)
T ss_pred HHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccc
Confidence 3443322222233333344344444445688999999999887 99999999999999999999999999999997 67
Q ss_pred chhhhhhhHhHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHH-
Q psy15226 165 KPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAF- 243 (362)
Q Consensus 165 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~i- 243 (362)
|....+.+.+.....+.... . .+..+.....+++.+.++...+..-+.-....|..|++.-|++.|+...++.+
T Consensus 320 R~p~~~i~~~~i~~~~~~~w---~--~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~ 394 (448)
T COG2271 320 RGPMALIFMLLITASLVLYW---L--APNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLI 394 (448)
T ss_pred cchHHHHHHHHHHHHHHHHH---c--CCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHh
Confidence 76544433333222222211 1 12222233333333333332554445546789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhchhHHHHHHHHhhHhHHhhhheee
Q psy15226 244 GSFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFNYFYL 283 (362)
Q Consensus 244 g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 283 (362)
|+..+....+++.|.+||...|.+..+.++++.++.....
T Consensus 395 Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~ 434 (448)
T COG2271 395 GAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPVW 434 (448)
T ss_pred hHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 8899999999998889999999988887777766554333
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.5e-18 Score=158.20 Aligned_cols=237 Identities=14% Similarity=0.130 Sum_probs=141.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhccCCChHHHHhcCCHHHHHHHHHhHcCCcccHHHHHHHHHHHHhhccccccchh-hh
Q psy15226 13 HVSYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGYL-EL 91 (362)
Q Consensus 13 ~~~Wr~~f~~~~~~~~~~~~~~~~lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 91 (362)
.+|||++|++.+++.++...+...+||+|+|..++++.++. +++.+.. .+
T Consensus 195 ~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~~~~-----------------------------~~~~~~~~~l 245 (438)
T PRK09952 195 SWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQAAA-----------------------------KKRIPVIEAL 245 (438)
T ss_pred ccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhcccc-----------------------------cccCCHHHHH
Confidence 46999999999988776655556689999764332111000 0011122 23
Q ss_pred ccCcchhHHHHHHHHHHHHHhhhhHHHHHHhHHHHhhh-cCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhh
Q psy15226 92 LTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPK-LDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCF 170 (362)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~ 170 (362)
+++++. ........+. ...+.+....|.|.+.++ .|.+...........++...++.++.|+++||+|||+.+..
T Consensus 246 ~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~ 321 (438)
T PRK09952 246 LRHPGA---FLKIIALRLC-ELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYIT 321 (438)
T ss_pred HHchHH---HHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence 333222 2222222222 222345566778877754 47774444445556677788899999999999999998887
Q ss_pred hhHhHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHH-HHHHHHHH
Q psy15226 171 SAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVAL-AFGSFITT 249 (362)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~-~ig~~~~~ 249 (362)
+.++..++...+... .. ..+.....+....+.+.+.....+..+++++|.+|++.|+++.++.+..+ .+++.++|
T Consensus 322 ~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p 397 (438)
T PRK09952 322 GALIGTLSAFPFFMA--LE--AQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTP 397 (438)
T ss_pred HHHHHHHHHHHHHHH--HH--cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHH
Confidence 766555443332211 10 11122222222222223322223444588999999999999999976554 48999999
Q ss_pred HHHHHHHHhh--chhHHHHHHHHhhHhHHhhhheeeccCC
Q psy15226 250 KFHILITKSL--GQHVIFFIYSSVHFCSVVFNYFYLMETK 287 (362)
Q Consensus 250 ~~~~~~~~~~--g~~~~~~~~~~~~~i~~~~~~~~~~e~~ 287 (362)
.+.+.+.+.. +|..++...+++.+++.+.. +..+|++
T Consensus 398 ~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~-~~~~~~~ 436 (438)
T PRK09952 398 FIAAALVTYFGGSWHSVAIYLLAGCLISAMTA-LLMKDNQ 436 (438)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHHHHH-HHccccc
Confidence 9999998754 36667776666666665554 4456643
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-18 Score=150.76 Aligned_cols=232 Identities=14% Similarity=0.166 Sum_probs=162.4
Q ss_pred CchhhHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhc-cCCChHHHHhcCCHHHHHHHHHhHcCCcccHHHHHHHHHHHHh
Q psy15226 1 MVGTLAILLIGNHVSYNSLNIALSILPVIFFILFSF-VPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQ 79 (362)
Q Consensus 1 ~~G~~~~~~l~~~~~Wr~~f~~~~~~~~~~~~~~~~-lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ 79 (362)
++|..+|.++++.+|||+.|++.+.++++..+..+. +| |+ +.+ +
T Consensus 151 v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP--~~----~~~--~--------------------------- 195 (394)
T COG2814 151 VLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP--PS----EIS--G--------------------------- 195 (394)
T ss_pred HHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC--Cc----cCC--C---------------------------
Confidence 468899999999999999999999999998776555 88 31 000 0
Q ss_pred hccccccchhhhccCcchhHHHHHHHHHHHHHhhhhHHHHHHhHHHHhhhc-CCCCCchhHHHHHHHHHHHHHHHHHHHH
Q psy15226 80 EDLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKL-DNAYFGPDQCILVFMIIMFLSNFLQAPL 158 (362)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l 158 (362)
+.+.+..+..+.+|+|+.+..+....+ .+.+.+...+|...++++. |++....++....++++.++|+.++|++
T Consensus 196 ~~~~~~~~~~~~l~~p~v~~~l~~t~l-----~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl 270 (394)
T COG2814 196 SLPGPLRTLLRLLRRPGVLLGLLATFL-----FMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRL 270 (394)
T ss_pred CCCcchhHHHHHhcCchHHHHHHHHHH-----HHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 000111224556666554444333332 2234555666666666655 9998899999999999999999999999
Q ss_pred hhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHH
Q psy15226 159 MDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCAS 238 (362)
Q Consensus 159 ~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~ 238 (362)
+|| +.|+.+.....+.++..+.+.+ ..++..........++..............++ .-++.+..+.+++.
T Consensus 271 ~dr-~~~~~l~~~~~l~a~~~l~l~~-------~~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~ 341 (394)
T COG2814 271 ADR-GPRRALIAALLLLALALLALTF-------TGASPALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNV 341 (394)
T ss_pred ccc-cchhHHHHHHHHHHHHHHHHHH-------hcchHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHH
Confidence 999 8888888887777777777655 22333343443444333321111122244455 33578999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhHhHHhhhhe
Q psy15226 239 VALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFNYF 281 (362)
Q Consensus 239 ~~~~ig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 281 (362)
...++|..+|..++|.+.++.|+....++.+.+.+++.++...
T Consensus 342 aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~ 384 (394)
T COG2814 342 AAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALL 384 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998888888888887666543
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.1e-19 Score=161.78 Aligned_cols=255 Identities=13% Similarity=0.020 Sum_probs=146.0
Q ss_pred chhhHHHHhhhhhhhHHHHHHHHHHHHHHHH-HhhccCCChHHHHhcCCHHHHHHHHHhHcCCcccHHHHHHHHHHHHhh
Q psy15226 2 VGTLAILLIGNHVSYNSLNIALSILPVIFFI-LFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQE 80 (362)
Q Consensus 2 ~G~~~~~~l~~~~~Wr~~f~~~~~~~~~~~~-~~~~lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (362)
+|++++..+...+|||+.|++.+++.++..+ ..+++||+|++...+...++.+ + .++. ++ +
T Consensus 162 ~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~----------~-~~~~----~~---~ 223 (434)
T PRK11663 162 LIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRH----------D-ALEL----AQ---Q 223 (434)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccc----------c-cccc----ch---h
Confidence 3455555566667999999999888776544 3445899886431111000000 0 0000 00 0
Q ss_pred ccccccchhh-----hccCcchhHHHHHHHHHHHHHhhhhHHHHHHhHHHHhhh-cCCCCCchhHHHHHHHHHHHHHHHH
Q psy15226 81 DLKSKTGYLE-----LLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPK-LDNAYFGPDQCILVFMIIMFLSNFL 154 (362)
Q Consensus 81 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~ 154 (362)
++.++.+.++ .++++. ++.... ..............|.|.++++ .|++..+.+...+...++..++.++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~ 298 (434)
T PRK11663 224 QEGAGLSRKEILTKYVLLNPY----IWLLSF-SYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALV 298 (434)
T ss_pred ccccCCChhhhHHHHHhcChH----HHHHHH-HHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 0001112222 233322 111111 1222222335566788988854 5898888888888999999999999
Q ss_pred HHHHhhhc--CCchhh-hhhhHhHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhcccccchhhcccCCCcchhh
Q psy15226 155 QAPLMDIL--GRKPLS-CFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRC 231 (362)
Q Consensus 155 ~g~l~dr~--grr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~ 231 (362)
+|+++||+ ++|+.. ........+....+.. . ...+...........+.+..+..........|.+|++.|+
T Consensus 299 ~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g 372 (434)
T PRK11663 299 AGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWL---M---PFASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAG 372 (434)
T ss_pred HhhhHHHhccCCccHHHHHHHHHHHHHHHHHHH---c---ccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHH
Confidence 99999998 333332 2222222212111111 0 1111111111112222111222222235678999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhHhHHhhhheeecc
Q psy15226 232 QASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFNYFYLME 285 (362)
Q Consensus 232 ~~~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e 285 (362)
++.|+.+...++|++++|.+.|.+.++.||...|...+++.+++.+..+...++
T Consensus 373 ~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~ 426 (434)
T PRK11663 373 AATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFLNA 426 (434)
T ss_pred hHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999988888877776555444443
|
|
| >KOG0255|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.8e-17 Score=154.71 Aligned_cols=269 Identities=18% Similarity=0.198 Sum_probs=180.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhhccCCChHHHHhcCCHHHHHHHHHhHcCCc---ccHHHHHHH---HHHHHhhccccccch
Q psy15226 15 SYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNK---KDVMEEMNS---IMDKTQEDLKSKTGY 88 (362)
Q Consensus 15 ~Wr~~f~~~~~~~~~~~~~~~~lpesp~~l~~~~~~~~a~~~l~~~~~~~---~~~~~~~~~---~~~~~~~~~~~~~~~ 88 (362)
+||+.+++..+++++..+++++.||||||+..+++.+++.+.+++..+.| .+.+...+. .++......+++..+
T Consensus 232 ~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (521)
T KOG0255|consen 232 DWRWLFWIISIPSGLFLLLWFLPPESPRWLLSKGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISF 311 (521)
T ss_pred hHHHHHHHHHHHHHHHHHHHHccCcChHHHHHcCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCch
Confidence 89999999999999988886667899999999999999999999986543 111111111 111111122334568
Q ss_pred hhhccCcchhHHHHHHHHHHHHHhhhhHHHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhh
Q psy15226 89 LELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLS 168 (362)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~ 168 (362)
.++++.+..++..+.....++... ..++ ...+...+++ .+........+.....+....+...|++|||...
T Consensus 312 ~~l~~~~~l~~~~~~~~~~~~~~~------~~y~-gl~~~~~~lg-~~~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~ 383 (521)
T KOG0255|consen 312 LDLFRTPRLRYRTLYLLFIWFVFS------LVYY-GLSLNVSGLG-GNIYLNFTLSGLVELPAYFRNGLLLPEFGRRPPL 383 (521)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHh------HHHH-hhhhhhhhcC-chHHHHHHHHHHHHhhHHHHHHHHHHHhCcHHHH
Confidence 888987666666666665553221 2222 2222222344 3455666666668888888889999999999999
Q ss_pred hhhhHhHHHHHHHHHHHHHHhcCCCCcc-hHHHHHHHHHHHHh-hcccccchhhcccCCCcchhhhhhHHHHHHHHHHHH
Q psy15226 169 CFSAALGCLLTFSTGLFYLYQGELPNFQ-YIPYITTLLYAASY-YGIGCLPNILVSELFPINVRCQASSCASVALAFGSF 246 (362)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~ 246 (362)
..+.....++.+..++.. .... +...+...+...+. .++... +.+.+|++|+..|..+.+.......++++
T Consensus 384 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~el~pt~~r~~~~~~~~~~~~~~~i 456 (521)
T KOG0255|consen 384 FLSLFLAGIGLLLFGWLP------DDLGGWLHWILPLLGKFFIGSAFNLI-FLYSAELIPTVVRNTAVGAISAAARLGSI 456 (521)
T ss_pred HHHHHHHHHHHHHHHHhh------ccchhHHHHHHHHHHHHHHHHHHHHH-HHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence 999999999888877622 1121 12233233333333 455555 68999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhchhHHHHHHHHhhHhHHhhhheeeccCCCCCHHHHHHHHh
Q psy15226 247 ITTKFHILITKSLGQHVIFFIYSSVHFCSVVFNYFYLMETKQKTLAEIQESIM 299 (362)
Q Consensus 247 ~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~ 299 (362)
++|.+...... ......+.+++....+...+...++|||+++.+.+..++.+
T Consensus 457 ~ap~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~lpet~~~~l~~t~~~~~ 508 (521)
T KOG0255|consen 457 LAPLFPLLLRQ-MFPLLGLILFGWLALLLGLLSLLLLPETKGKPLPGTLLDAE 508 (521)
T ss_pred HHHHHHHHHhh-hcccchHHHHHHHHHHHHHHHHhcCcccCCCCCchhHHHHH
Confidence 99988744433 32223333346666666666668899999988755444333
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-18 Score=158.33 Aligned_cols=249 Identities=10% Similarity=-0.090 Sum_probs=164.0
Q ss_pred chhhHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhccCCChHHHHhcCCHHHHHHHHHhHcCCcccHHHHHHHHHHHHhhc
Q psy15226 2 VGTLAILLIGNHVSYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQED 81 (362)
Q Consensus 2 ~G~~~~~~l~~~~~Wr~~f~~~~~~~~~~~~~~~~lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (362)
+|+.++..+....+||+.|++.++..++..+..+.+||+|+. +++. ++ ..+
T Consensus 161 ~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~-------------~~-~~~------------ 211 (417)
T PRK10489 161 ISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLLRLPALPPP---PQPR-------------EH-PLR------------ 211 (417)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCCCCCC---Cccc-------------cc-chH------------
Confidence 456666666666799999999888877777666678876531 0000 00 000
Q ss_pred cccccchhhhccCcchhHHHHHHHHHHHHHhhhhHHHHHHhHHHHhhh-cCCCCCchhHHHHHHHHHHHHHHHHHHHHhh
Q psy15226 82 LKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPK-LDNAYFGPDQCILVFMIIMFLSNFLQAPLMD 160 (362)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d 160 (362)
+.+.+++..++++..+...+... ... . ......+.|.+.++ .|.+....++......++..++.++.+++.|
T Consensus 212 -~~~~~~~~~~~~~~~~~~~~~~~-~~~---~--~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~ 284 (417)
T PRK10489 212 -SLLAGFRFLLASPVVGGIALLGG-LLT---M--ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAH 284 (417)
T ss_pred -HHHHHHHHHHcChHHHHHHHHHH-HHH---H--HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 00112334555433222222211 111 1 23455677888887 5888778888888899999999999999999
Q ss_pred hcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHH
Q psy15226 161 ILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVA 240 (362)
Q Consensus 161 r~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~ 240 (362)
|.++++.+..+....+++.+.+.. ..+.....+...+.+.+.....+...+++.|..|++.||++.|+.+..
T Consensus 285 ~~~~~~~l~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~ 356 (417)
T PRK10489 285 SARPGLLMLLSTLGSFLAVGLFGL--------MPMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQ 356 (417)
T ss_pred ccCcchHHHHHHHHHHHHHHHHHc--------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Confidence 987777777777666666555433 122222233333333332223344457889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhHhHHhhhheeeccCCCCCHHHH
Q psy15226 241 LAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFNYFYLMETKQKTLAEI 294 (362)
Q Consensus 241 ~~ig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~ 294 (362)
..+|..+++.+.|.+.+..|.+..+...+.+.++..++.+...+++++++.+|.
T Consensus 357 ~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (417)
T PRK10489 357 NVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGELRRFRQTPP 410 (417)
T ss_pred HhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhcccccccccccc
Confidence 999999999999999999998888887777766666666677788776655443
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.6e-18 Score=153.86 Aligned_cols=222 Identities=13% Similarity=0.096 Sum_probs=136.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhccCCChHHHHhcCCHHHHHHHHHhHcCCcccHHHHHHHHHHHHhhccccccchhh
Q psy15226 11 GNHVSYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGYLE 90 (362)
Q Consensus 11 ~~~~~Wr~~f~~~~~~~~~~~~~~~~lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (362)
....+||+.|++.+++.++...+....||++++..++.+. +++ ..++ ..+..+.++++
T Consensus 166 ~~~~~w~~~f~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~------------~~~-~~~~---------~~~~~~~~~~~ 223 (426)
T PRK12307 166 AEAYGWRAAFFVGLLPVLLVIYIRARAPESKEWEEAKLSG------------KGK-HSQS---------AWSVFSLSMKG 223 (426)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHCCCChHHHHhhhhc------------ccc-cccc---------chhhhhHHHHH
Confidence 3456999999987665554444444468887543211100 000 0000 00011124566
Q ss_pred hccCcchhHHHHHHHHHHHHHhhhhHHHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhh
Q psy15226 91 LLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCF 170 (362)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~ 170 (362)
.++++..+.... .....+ ..+...+....+.|.++++.|.+....+...+...++..++.++.|++.||+|||+.+..
T Consensus 224 ~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~ 301 (426)
T PRK12307 224 LFNRAQFPLTLC-VFIVLF-SIFGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSI 301 (426)
T ss_pred HHhhchHHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 776544332222 122111 122223345667888888888887777778888889999999999999999999998887
Q ss_pred hhHhHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHh--hcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHH
Q psy15226 171 SAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASY--YGIGCLPNILVSELFPINVRCQASSCASVALAFGSFIT 248 (362)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~ 248 (362)
+.++.++..+.... . ...... ......++.+. .+..+....++.|.+|++.|+++.|+.+....+++.++
T Consensus 302 ~~~~~~~~~~~~~~---~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~g 373 (426)
T PRK12307 302 GLLMSFLFIFPLFR---I----PQDNYL-LLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFN 373 (426)
T ss_pred HHHHHHHHHHHHHH---H----ccccHH-HHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHH
Confidence 77666555443322 0 111111 12222222222 23334444778999999999999999999999999999
Q ss_pred HHHHHHHHHhhchhHH
Q psy15226 249 TKFHILITKSLGQHVI 264 (362)
Q Consensus 249 ~~~~~~~~~~~g~~~~ 264 (362)
|.+.+.+.++.|....
T Consensus 374 p~~~g~l~~~~g~~~~ 389 (426)
T PRK12307 374 SMAATWLGITMGLGAA 389 (426)
T ss_pred HHHHHHHHHcccHHHH
Confidence 9999999998886543
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.8e-18 Score=155.09 Aligned_cols=159 Identities=14% Similarity=0.106 Sum_probs=105.3
Q ss_pred HHHHHHhHHHHhhhc-CCCCCchhHHHHHHHHHHHHHHHHHHHHhhhc--CCchhhh-hhhHhHHHHHHHHHHHHHHhcC
Q psy15226 116 ITSMITYSSTLLPKL-DNAYFGPDQCILVFMIIMFLSNFLQAPLMDIL--GRKPLSC-FSAALGCLLTFSTGLFYLYQGE 191 (362)
Q Consensus 116 ~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--grr~~~~-~~~~~~~~~~~~~~~~~~~~~~ 191 (362)
.+....|.|.++++. |++..+.+.......++.+++.+++|+++||+ +||.... ....+..++...+.. .
T Consensus 269 ~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~------~ 342 (452)
T PRK11273 269 RYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWL------N 342 (452)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHH------h
Confidence 356677899999874 88877788888888899999999999999999 4554322 222222222222111 0
Q ss_pred CCCcchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHH-HHHHHHHHHHhhchhHHHHHHHH
Q psy15226 192 LPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFI-TTKFHILITKSLGQHVIFFIYSS 270 (362)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~-~~~~~~~~~~~~g~~~~~~~~~~ 270 (362)
...............+....+.......+..|.+|++.||++.|+.+...++|+.+ +|.+.|.+.++.||+..|++.++
T Consensus 343 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~ 422 (452)
T PRK11273 343 PAGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIG 422 (452)
T ss_pred cccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHH
Confidence 11122222222222222212222222356789999999999999999988888765 79999999999999999988888
Q ss_pred hhHhHHhhhh
Q psy15226 271 VHFCSVVFNY 280 (362)
Q Consensus 271 ~~~i~~~~~~ 280 (362)
.++++.+...
T Consensus 423 ~~~~~~~~~~ 432 (452)
T PRK11273 423 GSILAVILLI 432 (452)
T ss_pred HHHHHHHHHH
Confidence 7777765553
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.7e-18 Score=155.79 Aligned_cols=149 Identities=15% Similarity=0.042 Sum_probs=107.2
Q ss_pred HHHHhHHHHhh-hcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcc
Q psy15226 118 SMITYSSTLLP-KLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQ 196 (362)
Q Consensus 118 ~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (362)
....++|.+++ +.|.+..+.+...+...++..++.++.|+++||+|||+.+..+..+..+..+.... ......
T Consensus 293 ~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 366 (496)
T PRK03893 293 PIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFA------IGGANV 366 (496)
T ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhh------ccccHH
Confidence 34567888885 66898888889999999999999999999999999999888776655554433322 011111
Q ss_pred hHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhh
Q psy15226 197 YIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVH 272 (362)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 272 (362)
..........+....+..+....++.|.+|++.|++++++.+....+|+.++|.+.|.+.++.|++..+...+...
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~ 442 (496)
T PRK03893 367 WVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSL 442 (496)
T ss_pred HHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHH
Confidence 1111211221222233334444788999999999999999999999999999999999999999887765554433
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.4e-18 Score=152.95 Aligned_cols=156 Identities=13% Similarity=-0.003 Sum_probs=111.9
Q ss_pred HHHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCc
Q psy15226 116 ITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNF 195 (362)
Q Consensus 116 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (362)
.+....|.|.+.++.|.+..+.+.......++..++.++.|+++||+|||+.+..+.....++...+.. ..+
T Consensus 236 ~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~--------~~~ 307 (406)
T PRK11551 236 LYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAA--------APS 307 (406)
T ss_pred HHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh--------cCc
Confidence 355667889999888998888889999999999999999999999999999887766655555444332 112
Q ss_pred chHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhch-hHHHHHHHHhhHh
Q psy15226 196 QYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQ-HVIFFIYSSVHFC 274 (362)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~i 274 (362)
...........+.+..+..+..+++..|.+|++.|+++.|+.+....+|..++|.+.|.+.++.+. ...++......++
T Consensus 308 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~ 387 (406)
T PRK11551 308 FAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILV 387 (406)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHH
Confidence 222222222333322334455568899999999999999999999999999999999999887544 3344444444444
Q ss_pred HHhhh
Q psy15226 275 SVVFN 279 (362)
Q Consensus 275 ~~~~~ 279 (362)
+.+..
T Consensus 388 ~~~~~ 392 (406)
T PRK11551 388 AALAA 392 (406)
T ss_pred HHHHH
Confidence 44443
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.3e-18 Score=156.01 Aligned_cols=158 Identities=11% Similarity=0.033 Sum_probs=110.5
Q ss_pred HHHHHHhHHHHhhh-cCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCC
Q psy15226 116 ITSMITYSSTLLPK-LDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPN 194 (362)
Q Consensus 116 ~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (362)
+.....|.|.++++ .|++..+++.......++..++.+++|+++||+|||+.+........++...+.. . ..+
T Consensus 274 ~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~---~---~~~ 347 (467)
T PRK09556 274 RIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVY---Q---HAT 347 (467)
T ss_pred HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHH---H---hcC
Confidence 45677889988865 5999888888888899999999999999999999998766554433333222111 0 112
Q ss_pred cchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHH-HHHHHHHHHHHHHH------------hhch
Q psy15226 195 FQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAF-GSFITTKFHILITK------------SLGQ 261 (362)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~i-g~~~~~~~~~~~~~------------~~g~ 261 (362)
+.....+..+..+....+..........|.+|++.||++.|+.+..+++ |++++|.+.|.+.+ ..||
T Consensus 348 ~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~ 427 (467)
T PRK09556 348 SEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGW 427 (467)
T ss_pred cHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccCh
Confidence 2222223333333222222222225667999999999999999999997 77999999999999 5789
Q ss_pred hHHHHHHHHhhHhHHhhh
Q psy15226 262 HVIFFIYSSVHFCSVVFN 279 (362)
Q Consensus 262 ~~~~~~~~~~~~i~~~~~ 279 (362)
+..|.+..++.+++.+..
T Consensus 428 ~~~f~~~~~~~~~~~~~~ 445 (467)
T PRK09556 428 AGTFAALDIAAIGCICLM 445 (467)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 988988877777765554
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.6e-17 Score=147.36 Aligned_cols=233 Identities=10% Similarity=-0.017 Sum_probs=138.5
Q ss_pred chhhHHHHhhhhhhhHHHHHHHHHHHHHHHHHhh-ccCCChHHHHhcCCHHHHHHHHHhHcCCcccHHHHHHHHHHHHhh
Q psy15226 2 VGTLAILLIGNHVSYNSLNIALSILPVIFFILFS-FVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQE 80 (362)
Q Consensus 2 ~G~~~~~~l~~~~~Wr~~f~~~~~~~~~~~~~~~-~lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (362)
+|++++..+.+.+|||+.|++.++++++..++.+ ++||+|++. ++. .+ .+ +
T Consensus 129 l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p~~~---~~~-------------~~-~~-~---------- 180 (368)
T TIGR00903 129 FALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPALPFQA---AEG-------------FG-FK-D---------- 180 (368)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCCCCCCC---CCC-------------cc-hH-H----------
Confidence 3455555666667999999998888877666444 589999642 110 00 00 0
Q ss_pred ccccccchhhhccCcchhHHHHHHHHHHHHHhhhhHHHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhh
Q psy15226 81 DLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMD 160 (362)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d 160 (362)
...+++++++++..+... ...++....++.+..|+|.++++.|++. +.+.......+. +.+..++++|
T Consensus 181 ---~~~~~~~ll~~~~~~~~~-----~~~~~~~~~~~~~~~wlp~~L~~~g~s~-~~~~~~~l~~~~---g~~g~~~~~d 248 (368)
T TIGR00903 181 ---AVKEFGALAGRKDLWIIG-----AILGFGVALFDNLAIWLEAALRPAGLED-IAGDAVALAILA---GLIGVAVIPD 248 (368)
T ss_pred ---HHHHHHHHHcChhHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHCCCCh-HHHHHHHHHHHH---HHHHHHHhhH
Confidence 001356677764432222 2222233345777889999998878773 344444444444 4444578888
Q ss_pred hcCCc---hhhhh-hhHhHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHH
Q psy15226 161 ILGRK---PLSCF-SAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSC 236 (362)
Q Consensus 161 r~grr---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~ 236 (362)
|..|| +.... .....++....... ..+....+....+.+.+.....+..+++.+|.+|++.|+++.|+
T Consensus 249 ~~~r~~~r~~~~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~ 320 (368)
T TIGR00903 249 RVARAGLRSIYIRAAALLIAAFFLALAF--------ELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGA 320 (368)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHH--------ccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccch
Confidence 87654 33222 22223322222221 11222222222222222233334455889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhHhHHhhhheeecc
Q psy15226 237 ASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFNYFYLME 285 (362)
Q Consensus 237 ~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e 285 (362)
.+..+++++..+|.+.+.+.. +....|.++++..+++.+... ..++
T Consensus 321 ~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~~-~~~~ 366 (368)
T TIGR00903 321 IGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIAL-LLPN 366 (368)
T ss_pred hhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHH-hCCC
Confidence 999999999999999987773 666778888777777766553 3344
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.1e-17 Score=149.42 Aligned_cols=224 Identities=16% Similarity=0.125 Sum_probs=132.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhccCCChHHHHhcCCHHHHHHHHHhHcCCcccHHHHHHHHHHHHhhccccccchhhhc
Q psy15226 13 HVSYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGYLELL 92 (362)
Q Consensus 13 ~~~Wr~~f~~~~~~~~~~~~~~~~lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (362)
.+|||++|++.++++++...+...+||+|++..++ . +++.++++++
T Consensus 194 ~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~~~---------------------------------~-~~~~~~~~l~ 239 (432)
T PRK10406 194 EWGWRIPFALGAVLAVVALWLRRQLDETSQQETRA---------------------------------L-KEAGSLKGLW 239 (432)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhcCCCCchHHHhh---------------------------------h-cccccHHHHH
Confidence 46999999999998888766666689987531000 0 0112456666
Q ss_pred cCcchhHHHHHHHHHHHHHhhhhHHHHHHhHHHHhhh-cCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhh
Q psy15226 93 TNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPK-LDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFS 171 (362)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~ 171 (362)
++++. ....... .......++....|.|.++++ .|.+..+.+....+..++..++.++.|+++||+|||+.+..+
T Consensus 240 ~~~~~---~~~~~~~-~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~ 315 (432)
T PRK10406 240 RNRRA---FIMVLGF-TAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCF 315 (432)
T ss_pred hhHHH---HHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHH
Confidence 64322 2222211 222122346677888988865 488866677777777788888899999999999999987766
Q ss_pred hHhHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHH-HHHHHHH
Q psy15226 172 AALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAF-GSFITTK 250 (362)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~i-g~~~~~~ 250 (362)
..+.++....+.. ... ........+....+.........+..+.+.+|.+|++.|+++.|+.+..+++ .+...|.
T Consensus 316 ~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~ 391 (432)
T PRK10406 316 GSLAALFTVPILS--ALQ--NVSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEY 391 (432)
T ss_pred HHHHHHHHHHHHH--HHH--cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHH
Confidence 5544333322211 011 1111222121121111111222233457889999999999999999877664 3445777
Q ss_pred HHHHHHHhhc-hhHHHHHHHHhhHhHHhhh
Q psy15226 251 FHILITKSLG-QHVIFFIYSSVHFCSVVFN 279 (362)
Q Consensus 251 ~~~~~~~~~g-~~~~~~~~~~~~~i~~~~~ 279 (362)
+.+.+ +..| +...++..++..+++.+..
T Consensus 392 ~~~~l-~~~g~~~~~~~~~~~~~~i~~~~~ 420 (432)
T PRK10406 392 VALSL-KSIGMETAFFWYVTLMAVVAFLVS 420 (432)
T ss_pred HHHHH-HHhCCCcHHHHHHHHHHHHHHHHH
Confidence 77754 5455 4444555555555554444
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.8e-18 Score=153.09 Aligned_cols=152 Identities=6% Similarity=0.041 Sum_probs=103.0
Q ss_pred hhhhHHHHHHhHHHHhhhc--CCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhh-hhhhHhHHHHHHHHHHHHHH
Q psy15226 112 RLGGITSMITYSSTLLPKL--DNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLS-CFSAALGCLLTFSTGLFYLY 188 (362)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~-~~~~~~~~~~~~~~~~~~~~ 188 (362)
....++.+..|.|.++++. |.+..+.+.......++..++.+++|+++||++||+.. ........++. .+..
T Consensus 254 ~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~-~~~~---- 328 (412)
T TIGR02332 254 LTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGW-LLAS---- 328 (412)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHH-HHHH----
Confidence 3334567788999999875 56666777888899999999999999999999987753 33333333332 2211
Q ss_pred hcCCCCcchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc-hhHHHHH
Q psy15226 189 QGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLG-QHVIFFI 267 (362)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g-~~~~~~~ 267 (362)
... ..............+.....+..+....|.+|++.|+++.|+.+..+++|++++|.+.+.+.+..| |...+++
T Consensus 329 --~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~ 405 (412)
T TIGR02332 329 --ATD-HNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWF 405 (412)
T ss_pred --hcC-CHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHH
Confidence 011 122222222222222212223334556788999999999999999999999999999999998875 8877776
Q ss_pred HHHh
Q psy15226 268 YSSV 271 (362)
Q Consensus 268 ~~~~ 271 (362)
.++.
T Consensus 406 ~~~~ 409 (412)
T TIGR02332 406 VAAL 409 (412)
T ss_pred HHHH
Confidence 6554
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.2e-17 Score=148.26 Aligned_cols=244 Identities=13% Similarity=0.102 Sum_probs=140.5
Q ss_pred hhhHHHHhhhhhh--hHHHHHHHHHHHHHHHHHhhccCCChHHHHhcCCHHHHHHHHHhHcCCcccHHHHHHHHHHHHhh
Q psy15226 3 GTLAILLIGNHVS--YNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQE 80 (362)
Q Consensus 3 G~~~~~~l~~~~~--Wr~~f~~~~~~~~~~~~~~~~lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (362)
|++++..+....+ ||+.|++.+++.++..+....+||+|++..++++.++.++..++..+.++......
T Consensus 152 ~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 222 (405)
T TIGR00891 152 AAQVYSLVVPVWGDGWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRIANIV--------- 222 (405)
T ss_pred HHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccchhhhhhh---------
Confidence 3444444444445 99999998877777666666689998764333222222111111111110000000
Q ss_pred ccccccchhhhccCcchhHHHHHHHHHHHHHhhhhHHHHHHhHHHHhhh-cCCCCCchhHHHHHHHHHHHHHHHHHHHHh
Q psy15226 81 DLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPK-LDNAYFGPDQCILVFMIIMFLSNFLQAPLM 159 (362)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 159 (362)
++.....++..+ +.+...........+... .......+.|.+..+ .|.+..+.+.......++..++.++.|+++
T Consensus 223 -~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~ 298 (405)
T TIGR00891 223 -MTLAAAMVQSAG--KRWPTFVYLVVLVLFANL-YSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLG 298 (405)
T ss_pred -hhhhHHhhhhhh--hhhHHHHHHHHHHHHHHH-HHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000001111111 111112222222222111 123445566777654 588877888888899999999999999999
Q ss_pred hhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHH
Q psy15226 160 DILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASV 239 (362)
Q Consensus 160 dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~ 239 (362)
||+|||+.+..+.....+....... ...+...........+....+..+....+++|.+|++.|+++.|+.+.
T Consensus 299 dr~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 371 (405)
T TIGR00891 299 DWLGRRKAYVCSLLAGQLLIIPVFA-------IGANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQ 371 (405)
T ss_pred HHhCchhhhHHHHHHHHHHHHHHHH-------hCCchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHH
Confidence 9999999888776654333222211 111222222222222222233334445788999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhc-hhHHHH
Q psy15226 240 ALAFGSFITTKFHILITKSLG-QHVIFF 266 (362)
Q Consensus 240 ~~~ig~~~~~~~~~~~~~~~g-~~~~~~ 266 (362)
...+|+.++|.+.|.+.++.| +...+.
T Consensus 372 ~~~~g~~~g~~~~g~l~~~~g~~~~~~~ 399 (405)
T TIGR00891 372 LGNLGGALAPIIGALLAQRLDEYGTALA 399 (405)
T ss_pred HHHHHHHHHHHHHHHHHHhccccchhHH
Confidence 999999999999999999988 654443
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.7e-17 Score=147.06 Aligned_cols=231 Identities=14% Similarity=0.121 Sum_probs=147.8
Q ss_pred chhhHHHHhhhhhhhHHHHHHHHHHHHHHHHHhh-ccCCChHHHHhcCCHHHHHHHHHhHcCCcccHHHHHHHHHHHHhh
Q psy15226 2 VGTLAILLIGNHVSYNSLNIALSILPVIFFILFS-FVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQE 80 (362)
Q Consensus 2 ~G~~~~~~l~~~~~Wr~~f~~~~~~~~~~~~~~~-~lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (362)
+|++++..+.+..|||+.|++.+++.++..+..+ .+||.|+ +++
T Consensus 148 ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~----~~~------------------------------- 192 (390)
T PRK03545 148 LGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLPS----EHS------------------------------- 192 (390)
T ss_pred HHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCCC----CCc-------------------------------
Confidence 4566666666778999999999988877665443 4677652 000
Q ss_pred ccccccchhhhccCcchhHHHHHHHHHHHHHhhhhHHHHHHhHHHHhhh-cCCCCCchhHHHHHHHHHHHHHHHHHHHHh
Q psy15226 81 DLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPK-LDNAYFGPDQCILVFMIIMFLSNFLQAPLM 159 (362)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 159 (362)
.+..+.++.++++..+........... ..+....+.+.+.++ .|.+..+.+......+++.+++.++.|+++
T Consensus 193 --~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~ 265 (390)
T PRK03545 193 --GSLKSLPLLFRRPALVSLYLLTVVVVT-----AHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLG 265 (390)
T ss_pred --chHHHHHHHHhCcHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 000123456665443332222221111 122334455656555 488877888888889999999999999999
Q ss_pred hhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHH
Q psy15226 160 DILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASV 239 (362)
Q Consensus 160 dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~ 239 (362)
||++||... .+.....++...... ..++.+.......+.+.+.....+.....+.|..| +.|++++|+.+.
T Consensus 266 dr~~~~~~~-~~~~~~~~~~~~l~~-------~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~ 336 (390)
T PRK03545 266 NRHPSGFLL-IAIALLLVCLLLLLP-------AANSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSG 336 (390)
T ss_pred hccchhHHH-HHHHHHHHHHHHHHH-------HhchHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHH
Confidence 999988654 333333333332221 11222333333334444333333333466777766 588999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhHhHHhhhheee
Q psy15226 240 ALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFNYFYL 283 (362)
Q Consensus 240 ~~~ig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 283 (362)
...+|..++|.+.|.+.++.|++..+...+++.+++.+..+...
T Consensus 337 ~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
T PRK03545 337 IFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIF 380 (390)
T ss_pred HHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999888888888776665444
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.7e-17 Score=146.46 Aligned_cols=233 Identities=11% Similarity=0.093 Sum_probs=141.4
Q ss_pred chhhHHHHhhhhhhhHHHHHHHHHHHHHHHHHhh-ccCCChHHHHhcCCHHHHHHHHHhHcCCcccHHHHHHHHHHHHhh
Q psy15226 2 VGTLAILLIGNHVSYNSLNIALSILPVIFFILFS-FVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQE 80 (362)
Q Consensus 2 ~G~~~~~~l~~~~~Wr~~f~~~~~~~~~~~~~~~-~lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (362)
+|++++..+.+.+|||..|++.++..++..+..+ ++||+|+ +.+ ++ .
T Consensus 158 ~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~------------~--------------- 205 (393)
T PRK15011 158 IGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMRK----ELP-LA------------T--------------- 205 (393)
T ss_pred HhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcCccCC----CCc-cc------------c---------------
Confidence 4666666666778999999999988877666544 4888752 000 00 0
Q ss_pred ccccccchhhhccCcchhHHHHHHHHHHHHHhhhhHHHHHHhHHHHhhh-cCCCCCchhHHHHHHHHHHHHHHHHHHHHh
Q psy15226 81 DLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPK-LDNAYFGPDQCILVFMIIMFLSNFLQAPLM 159 (362)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 159 (362)
.+ .++..++++.....+... ... ...+.....+.|.++++ .|.+..+.+.......++.+++.+++|+++
T Consensus 206 --~~---~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~ 276 (393)
T PRK15011 206 --GT---LEAPRRNRRDTLLLFVIC---TLM-WGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFA 276 (393)
T ss_pred --cc---ccccccccccHHHHHHHH---HHH-HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 000001111111111111 111 11233445677877754 488877777777777778888999999999
Q ss_pred hhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHH
Q psy15226 160 DILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASV 239 (362)
Q Consensus 160 dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~ 239 (362)
||+|||+.+..+.....+....... .+.....+....+.........+....+..|.+|+ .|+++.++.+.
T Consensus 277 dr~g~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~ 347 (393)
T PRK15011 277 KRLGKRFLMRVAAVAGVCFYAGMLM--------AHSPAILLGLQLLNAIYIGILGGIGMLYFQDLMPG-QAGSATTLYTN 347 (393)
T ss_pred HHhChHHHHHHHHHHHHHHHHHHHH--------HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CcchHHHHHHH
Confidence 9999999777655544443322211 11222222222222222211112223667888886 59999999998
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhHhHHhhhheeecc
Q psy15226 240 ALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFNYFYLME 285 (362)
Q Consensus 240 ~~~ig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e 285 (362)
..++|..+++.+.|.+.++.||+..+.+.+++.+++.+.. +..||
T Consensus 348 ~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~ 392 (393)
T PRK15011 348 TSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCL-LRIKD 392 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-HhhcC
Confidence 8999999999999999999999988887777777765554 44454
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.7e-17 Score=145.57 Aligned_cols=224 Identities=14% Similarity=0.025 Sum_probs=144.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhc-cCCChHHHHhcCCHHHHHHHHHhHcCCcccHHHHHHHHHHHHhhccccccchhh
Q psy15226 12 NHVSYNSLNIALSILPVIFFILFSF-VPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGYLE 90 (362)
Q Consensus 12 ~~~~Wr~~f~~~~~~~~~~~~~~~~-lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (362)
...|||+.|++.+++.++..+..++ ++|+|+- +.+ ++++ . ++++.+.++
T Consensus 151 ~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~~~------------~~~~-~--------------~~~~~~~~~ 200 (377)
T TIGR00890 151 NLEGVPAAFIYMGIIFLLVIVLGAFLIGYPPGQ---LIK------------TNIE-V--------------SVKDYTVWE 200 (377)
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHheecCchh---ccc------------cCcc-c--------------chhhhhHHH
Confidence 3458999999999988887665544 5555420 000 0000 0 001112345
Q ss_pred hccCcchhHHHHHHHHHHHHHhhhhHHHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhh
Q psy15226 91 LLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCF 170 (362)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~ 170 (362)
.++++..+... ...... .. .......+.+.+.++.|.+..+.+.......++..++.++.|+++||+|||+.+..
T Consensus 201 ~~~~~~~~~~~-~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~ 275 (377)
T TIGR00890 201 MLRTPQFWVLY-LSFFLN---AV-SGLLLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSI 275 (377)
T ss_pred HHcCccHHHHH-HHHHHH---hH-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 56554332221 111111 11 12233344566667778776667788888999999999999999999999999888
Q ss_pred hhHhHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHH
Q psy15226 171 SAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTK 250 (362)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~ 250 (362)
+....+++.+.+.. ................+.+.....+....+++|.+|+++|+++.|+.+....+|+.++|.
T Consensus 276 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~ 349 (377)
T TIGR00890 276 VFGISAVGMAAMLF------IPMLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGL 349 (377)
T ss_pred HHHHHHHHHHHHHH------cccchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHH
Confidence 88777777665543 111111122222222333322333344478899999999999999999999999999999
Q ss_pred HHHHHHHhhchhHHHHHHHHhhHhHH
Q psy15226 251 FHILITKSLGQHVIFFIYSSVHFCSV 276 (362)
Q Consensus 251 ~~~~~~~~~g~~~~~~~~~~~~~i~~ 276 (362)
+.+.+.++.||+..|.+.+++.+++.
T Consensus 350 ~~g~l~~~~g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 350 IASHALTEIGFEYTFIVTGAFALTSL 375 (377)
T ss_pred HHHHHHhhhchhhHHHHHHHHHHHhc
Confidence 99999999999988888777766653
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.5e-17 Score=149.63 Aligned_cols=258 Identities=15% Similarity=0.104 Sum_probs=150.2
Q ss_pred hhhHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhc-cCCChHHHHhcCCHHHHHHHHHhHcCCcccHHHHHHHHHHHHhhc
Q psy15226 3 GTLAILLIGNHVSYNSLNIALSILPVIFFILFSF-VPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQED 81 (362)
Q Consensus 3 G~~~~~~l~~~~~Wr~~f~~~~~~~~~~~~~~~~-lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (362)
|+.++..+....+||+.|++.+++.++..+..++ .||+|+. +++.++.++.... +...++ .++.+++
T Consensus 134 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~--------~~~~~~-~~~~~~~ 201 (399)
T TIGR00893 134 GGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQK---AKWLTEEEKYIVV--------GGLLAE-QQGKGPS 201 (399)
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhheecCCCCc---cccCCHHHHhhcc--------hhhccc-ccccccc
Confidence 4445555555679999999999888876665544 6776631 1110111000000 000000 0000011
Q ss_pred cccccchhhhccCcchhHHHHHHHHHHHHHhhhhHHHHHHhHHHHhhh-cCCCCCchhHHHHHHHHHHHHHHHHHHHHhh
Q psy15226 82 LKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPK-LDNAYFGPDQCILVFMIIMFLSNFLQAPLMD 160 (362)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d 160 (362)
+..+.+.++.++++..+. ...... ...........+.|.++++ .|.+..+.+.......++..++.++.|+++|
T Consensus 202 ~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 276 (399)
T TIGR00893 202 TPKKYQIKELLKDRRVWG----LALGQF-LVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSD 276 (399)
T ss_pred CCCccchHHHhcCHHHHH----HHHHHH-HHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 122334556666533222 222222 2222345667778888765 4888777888888999999999999999999
Q ss_pred hcCCchhhhh-hhHhHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHH
Q psy15226 161 ILGRKPLSCF-SAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASV 239 (362)
Q Consensus 161 r~grr~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~ 239 (362)
|++||+.... ......++.+......... ....................+..+..+++.+|.+|++.|+++.++.+.
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 354 (399)
T TIGR00893 277 LLLRRGKSLVFARKTAIIAGLVLSLLMFAT--NYVNIPYAALALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINS 354 (399)
T ss_pred HHhhcccchhHHHHHHHHHHHHHHHHHHHh--ccchhHHHHHHHHHHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHH
Confidence 9999962211 1111111111111111110 111122222222222222233566777899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhc-hhHHHHHHHHhhHhHHhhh
Q psy15226 240 ALAFGSFITTKFHILITKSLG-QHVIFFIYSSVHFCSVVFN 279 (362)
Q Consensus 240 ~~~ig~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~i~~~~~ 279 (362)
...+|..++|.+.|.+.+..| +...+.+.+++.+++.+..
T Consensus 355 ~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 395 (399)
T TIGR00893 355 LGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSY 395 (399)
T ss_pred HHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888 8888887777776665544
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.5e-17 Score=144.77 Aligned_cols=233 Identities=12% Similarity=0.096 Sum_probs=145.9
Q ss_pred chhhHHHHhhhhhhhHHHHHHHHHHHHHHHHHhh-ccCCChHHHHhcCCHHHHHHHHHhHcCCcccHHHHHHHHHHHHhh
Q psy15226 2 VGTLAILLIGNHVSYNSLNIALSILPVIFFILFS-FVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQE 80 (362)
Q Consensus 2 ~G~~~~~~l~~~~~Wr~~f~~~~~~~~~~~~~~~-~lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (362)
+|+.++..+.+.+|||+.|++.+++.++..+..+ ++||+|++. + ++
T Consensus 140 ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~---------------------------- 186 (375)
T TIGR00899 140 IGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLPSYPRGA----P-GA---------------------------- 186 (375)
T ss_pred HhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCCCcccCc----c-cc----------------------------
Confidence 4566666666777999999999988777666544 489987421 0 00
Q ss_pred ccccccchhhhccCcchhHHHHHHHHHHHHHhhhhHHHHHHhHHHHhh-hcCCCCCchhHHHHHHHHHHHHHHHHHHHHh
Q psy15226 81 DLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLP-KLDNAYFGPDQCILVFMIIMFLSNFLQAPLM 159 (362)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 159 (362)
+.+.+.++.++++..+.... ....... .......+.|.+++ +.|.++.+.+...........++.++.|++.
T Consensus 187 --~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~ 259 (375)
T TIGR00899 187 --LTRLEVRGLLASRDTRLLFV-ACTLMWG----CNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLI 259 (375)
T ss_pred --cCcchhhhhhcCcchHHHHH-HHHHHHH----HHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 00011222344333322222 1111111 12333445566664 4588877777777777777788899999999
Q ss_pred hhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHH
Q psy15226 160 DILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASV 239 (362)
Q Consensus 160 dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~ 239 (362)
||+|||+.+..+.....+....... .++.+.......+.+.+.....+....+..|..|+ +|+++.++.+.
T Consensus 260 ~r~g~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 330 (375)
T TIGR00899 260 KRFGKRRLMLLAALAGVAFYTGLAA--------DNSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPG-RAGAATTLYTN 330 (375)
T ss_pred HHhcchhHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-hhhHHHHHHHH
Confidence 9999999887766554444333222 11222222222333333322234445778888876 46799999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhHhHHhhhheeec
Q psy15226 240 ALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFNYFYLM 284 (362)
Q Consensus 240 ~~~ig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 284 (362)
..++|..++|.+.|.+.+..|++..+++.+++.+++.++. ..++
T Consensus 331 ~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~ 374 (375)
T TIGR00899 331 TGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCL-LLIK 374 (375)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH-heec
Confidence 9999999999999999999999988888888777776554 4443
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.9e-17 Score=146.88 Aligned_cols=144 Identities=15% Similarity=0.088 Sum_probs=96.4
Q ss_pred hHHHHHHhHHHHhhh-cCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCC
Q psy15226 115 GITSMITYSSTLLPK-LDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELP 193 (362)
Q Consensus 115 ~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (362)
.++....|.|.++++ .|++..+..+......++..++.+++|+++||+|||+.+..+.....+....... ... ..
T Consensus 253 ~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~--~~~--~~ 328 (434)
T PRK15075 253 SFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALS--WLV--AA 328 (434)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH--HHH--cC
Confidence 456778889999887 4888777778888888999999999999999999999877665443322211110 111 11
Q ss_pred CcchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHH-HHHHHHHHHHHHHHHhhchh
Q psy15226 194 NFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALA-FGSFITTKFHILITKSLGQH 262 (362)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~-ig~~~~~~~~~~~~~~~g~~ 262 (362)
...........+.+.+.....+..+.+..|.+|++.|+++.++.+..+. +++.++|.+.+.+.++.|+.
T Consensus 329 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~ 398 (434)
T PRK15075 329 PSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK 398 (434)
T ss_pred CchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence 1111111112222222233333444788999999999999999765555 45888999999999988853
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.5e-17 Score=146.53 Aligned_cols=147 Identities=12% Similarity=0.060 Sum_probs=105.8
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHh
Q psy15226 131 DNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASY 210 (362)
Q Consensus 131 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (362)
+.+....+...++..++..++.+++|+++||+|||+.+..+..+.+++.+...+ .++.+..+....+.+...
T Consensus 258 ~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~--------~~~~~~~~~~~~l~g~~~ 329 (420)
T PRK09528 258 EQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGF--------ATGPLEVSILKLLHAFEV 329 (420)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHh--------cccHHHHHHHHHHHHHHH
Confidence 444445567777888888999999999999999999988888877777666544 122333333333333333
Q ss_pred hcccccchhhcccCCCcchhhhhhHH-HHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhHhHHhhhheeecc
Q psy15226 211 YGIGCLPNILVSELFPINVRCQASSC-ASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFNYFYLME 285 (362)
Q Consensus 211 ~~~~~~~~~~~~e~~p~~~r~~~~~~-~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e 285 (362)
....+....++.|.+|++.|++..+. .++...+|.++++.+.|.+.+..||+..|...+++.++..++.+...++
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~ 405 (420)
T PRK09528 330 PFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSG 405 (420)
T ss_pred HHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcC
Confidence 22222334778899999999988765 5677889999999999999999999999998888877766655444443
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.3e-16 Score=144.48 Aligned_cols=165 Identities=9% Similarity=0.154 Sum_probs=118.9
Q ss_pred HHHhHHHHhhhcCCCC--------CchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhc
Q psy15226 119 MITYSSTLLPKLDNAY--------FGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQG 190 (362)
Q Consensus 119 ~~~~~~~~~~~~g~~~--------~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (362)
...+.+.+.++.|.++ ...+...+...+..+++.++.|+++||+|||+++..+.+..+++...+..
T Consensus 227 ~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~------ 300 (418)
T TIGR00889 227 TNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAY------ 300 (418)
T ss_pred HHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH------
Confidence 3355576776666443 34467778888889999999999999999999999998888777655543
Q ss_pred CCCCc--chHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHH-HHHHHHHHHHHHHHHHHHHhh------ch
Q psy15226 191 ELPNF--QYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCAS-VALAFGSFITTKFHILITKSL------GQ 261 (362)
Q Consensus 191 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~-~~~~ig~~~~~~~~~~~~~~~------g~ 261 (362)
..... ....++...+.+.+.....+....++.|.+|++.|+++.|+.+ ....+|.+++|.+.|.+.++. ||
T Consensus 301 ~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~ 380 (418)
T TIGR00889 301 GDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDW 380 (418)
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCch
Confidence 11111 1222223333333332233444478899999999999999997 567899999999999999874 58
Q ss_pred hHHHHHHHHhhHhHHhhhheeeccCCCC
Q psy15226 262 HVIFFIYSSVHFCSVVFNYFYLMETKQK 289 (362)
Q Consensus 262 ~~~~~~~~~~~~i~~~~~~~~~~e~~~~ 289 (362)
+..|.+.+++.+++.++.+++.||+++.
T Consensus 381 ~~~f~~~~~~~~i~~~l~~~~~~~~~~~ 408 (418)
T TIGR00889 381 QTMWLFFAGYIAILAVLFMIFFKYSHNA 408 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence 8888888888887777777778876443
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.5e-17 Score=148.69 Aligned_cols=169 Identities=12% Similarity=0.107 Sum_probs=111.1
Q ss_pred HHHHHHhHHHHhhhc-CCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCC
Q psy15226 116 ITSMITYSSTLLPKL-DNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPN 194 (362)
Q Consensus 116 ~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (362)
.+....|.|.++++. |.+..+.++...+..+.++++.+++|+++||+++++....+........+....+. . ....
T Consensus 267 ~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~ 343 (438)
T TIGR00712 267 RYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYW-M--NPAG 343 (438)
T ss_pred HHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHH-h--cCCC
Confidence 356677889998875 88888888888889999999999999999999654332233222222111111111 1 1111
Q ss_pred cchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHH-HHHHHHHHHHHHhhchhHHHHHHHHhhH
Q psy15226 195 FQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGS-FITTKFHILITKSLGQHVIFFIYSSVHF 273 (362)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 273 (362)
+...........+.+..+..........|.+|++.|+++.|+.+....+++ +++|.+.|.+.++.|+...+.+..+..+
T Consensus 344 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~ 423 (438)
T TIGR00712 344 NPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSI 423 (438)
T ss_pred chHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHH
Confidence 222222222222222112111212457799999999999999998888875 6899999999999999988888888777
Q ss_pred hHHhhhheeeccCC
Q psy15226 274 CSVVFNYFYLMETK 287 (362)
Q Consensus 274 i~~~~~~~~~~e~~ 287 (362)
++.+...+.+||.|
T Consensus 424 ~~~~~~~~~~~~~~ 437 (438)
T TIGR00712 424 LAVILLIVVMIGEK 437 (438)
T ss_pred HHHHHHHHHHhhcc
Confidence 77777767777754
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.8e-17 Score=145.73 Aligned_cols=182 Identities=12% Similarity=0.068 Sum_probs=139.5
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHH
Q psy15226 99 RAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLL 178 (362)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~ 178 (362)
++.+....+.+..............|.+.+++|.+..+.++..+...++..++.++.|+++||+|||+++..+.++..++
T Consensus 7 ~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~ 86 (412)
T TIGR02332 7 RRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIA 86 (412)
T ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHH
Confidence 33444444444444444566667778777888999899999999999999999999999999999999999999888888
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHH-
Q psy15226 179 TFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITK- 257 (362)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~- 257 (362)
....++ .++....+....+.+.+.....+....++.|.+|+++|+++.++.+....+|..+++.+.+.+.+
T Consensus 87 ~~~~~~--------~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~ 158 (412)
T TIGR02332 87 STATMF--------ATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILAL 158 (412)
T ss_pred HHHHHH--------hcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 887765 12333334444444444444445555788999999999999999999999999999999988764
Q ss_pred -----hhchhHHHHHHHHhhHhHHhhhheeeccCCC
Q psy15226 258 -----SLGQHVIFFIYSSVHFCSVVFNYFYLMETKQ 288 (362)
Q Consensus 258 -----~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~ 288 (362)
..|||+.|.+.++..++..++.++++||+++
T Consensus 159 ~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~ 194 (412)
T TIGR02332 159 DGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPD 194 (412)
T ss_pred CCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence 3689999999888777666666677788754
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=4e-16 Score=140.37 Aligned_cols=167 Identities=8% Similarity=-0.022 Sum_probs=121.7
Q ss_pred hHHHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCC
Q psy15226 115 GITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPN 194 (362)
Q Consensus 115 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (362)
++.....|.|.++++.|.+..+.+...++..++.+++.++.+++.||+|||+.+..+..+..++...+.. ...
T Consensus 220 ~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~-------~~~ 292 (393)
T PRK09705 220 GYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIW-------LPL 292 (393)
T ss_pred HHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH-------ccc
Confidence 4466778889998888999888889999999999999999999999999999888877666666554332 011
Q ss_pred cchHHHHHHHHHHHHhhcccccchhhcccCC-CcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc-hhHHHHHHHHhh
Q psy15226 195 FQYIPYITTLLYAASYYGIGCLPNILVSELF-PINVRCQASSCASVALAFGSFITTKFHILITKSLG-QHVIFFIYSSVH 272 (362)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g-~~~~~~~~~~~~ 272 (362)
..... ...+.+.+.....+.......+.. |++.|++..++.+..+.+++.++|.+.|++.+..| +...+.+.++++
T Consensus 293 ~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~ 370 (393)
T PRK09705 293 QLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCV 370 (393)
T ss_pred hHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHH
Confidence 11111 122223333222333334555666 46789999999999999999999999999999887 566677777777
Q ss_pred HhHHhhhheeeccCCCCC
Q psy15226 273 FCSVVFNYFYLMETKQKT 290 (362)
Q Consensus 273 ~i~~~~~~~~~~e~~~~~ 290 (362)
++..+....+.||++++.
T Consensus 371 ~~~~~~~~~~~~~~~~~~ 388 (393)
T PRK09705 371 VGLMIITLRFAPARFPQL 388 (393)
T ss_pred HHHHHHHHHhccccccch
Confidence 777666667788877654
|
|
| >KOG2532|consensus | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.7e-17 Score=145.03 Aligned_cols=247 Identities=15% Similarity=0.180 Sum_probs=162.5
Q ss_pred hhHHHHhhhh-hhhHHHHHHHHHHHHHHHHHhhc-cCCChHHHHhcCCHHHHHHHHHhHcCCcccHHHHHHHHHHHHhhc
Q psy15226 4 TLAILLIGNH-VSYNSLNIALSILPVIFFILFSF-VPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQED 81 (362)
Q Consensus 4 ~~~~~~l~~~-~~Wr~~f~~~~~~~~~~~~~~~~-lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (362)
..+++.+... +||+++|++.++.++++.+++++ ..|+|. +|.+.. ++|.+.+++...++
T Consensus 181 mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~---~h~~is----------------~~El~~I~~~k~~~ 241 (466)
T KOG2532|consen 181 MPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPS---KHPNIS----------------EKELKYIEKGKSEA 241 (466)
T ss_pred HHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcc---cCCCCC----------------HHHHHHHHhccccc
Confidence 3344444455 89999999999999999988776 688885 222221 22222222222111
Q ss_pred ---cccccchhhhccCcchhHHHHHHHHHHHHHhhhhHHHHHHhHHHHhhhc-CCCCCchhHHHHHHHHHHHHHHHHHHH
Q psy15226 82 ---LKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKL-DNAYFGPDQCILVFMIIMFLSNFLQAP 157 (362)
Q Consensus 82 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~ 157 (362)
+..+.|++++++++.. ++.....+....+.+.+..|.|.|+++. |++..+.++..+++.+.+.+..+++|.
T Consensus 242 ~~~~~~~vP~~~i~ts~~v-----wai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~ 316 (466)
T KOG2532|consen 242 HVKKKPPVPYKAILTSPPV-----WAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQ 316 (466)
T ss_pred ccCCCCCCCHHHHHcCHHH-----HHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHH
Confidence 1246799999997433 3333344444456788999999999987 999999999999999999999999999
Q ss_pred HhhhcCCc---------hhhhhhhHhHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhcccccchhhcccCC-Cc
Q psy15226 158 LMDILGRK---------PLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELF-PI 227 (362)
Q Consensus 158 l~dr~grr---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~ 227 (362)
++||.-+| -.-.++....+++++.+++ ......+..++++.+. .+..+..... .+..-.- .+
T Consensus 317 lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~------~~~~~~~~a~~~l~~~-~~~~g~~~~G-f~~~~~~~ap 388 (466)
T KOG2532|consen 317 LSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAF------TSDEHRLLAVILLTIA-IGLSGFNISG-FYKNHQDIAP 388 (466)
T ss_pred HHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeee------cCCCcchHHHHHHHHH-HHHcccchhh-hHhhhhhccc
Confidence 99998663 1122333344444444333 1122222333322222 2223333333 2222222 56
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHH---hhchhHHHHHHHHhhHhHHhhhhee
Q psy15226 228 NVRCQASSCASVALAFGSFITTKFHILITK---SLGQHVIFFIYSSVHFCSVVFNYFY 282 (362)
Q Consensus 228 ~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~i~~~~~~~~ 282 (362)
++-+..+|+.+....+.++++|.+.+.+.+ ...|+..|++.+++.+++.++..++
T Consensus 389 q~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 389 QHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFF 446 (466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence 788999999999999999999999999884 3479999999999988887665444
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-16 Score=144.34 Aligned_cols=240 Identities=14% Similarity=0.146 Sum_probs=139.3
Q ss_pred hhhHHHHhhhhhhhHHHHHHHHHHHHHHHH-HhhccCCChHHHHhcCCHHHHHHHHHhHcCCcccHHHHHHHHHHHHhhc
Q psy15226 3 GTLAILLIGNHVSYNSLNIALSILPVIFFI-LFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQED 81 (362)
Q Consensus 3 G~~~~~~l~~~~~Wr~~f~~~~~~~~~~~~-~~~~lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (362)
|+.++..+.+..|||+.|++.++..++..+ ...++||+|++...+ +.+++++..++......++.++ +.+++..++
T Consensus 157 ~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 233 (398)
T TIGR00895 157 GGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSK-RPETVRRIVNAIAPQMQAEAQS--ALPEQKATQ 233 (398)
T ss_pred HHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhc-CHHHHHHHHHHHHHhccccccc--ccccccccc
Confidence 444455555667999999998766665544 445589999876554 3444433333322211100000 000000000
Q ss_pred cccccchhhhccCcchhHHHHHHHHHHHHHhhhhHHHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhh
Q psy15226 82 LKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDI 161 (362)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr 161 (362)
+..+...+..++. +..+.......... ...........+.|.+.++.|.+..+.+.......++..++.++.++++||
T Consensus 234 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 311 (398)
T TIGR00895 234 GTKRSVFKALFQG-KTARITVLLWLLYF-MLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADR 311 (398)
T ss_pred chhhHHHHHHhcc-hhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 0111112223332 22222222222222 222334566778887777788887888888899999999999999999999
Q ss_pred cCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHH
Q psy15226 162 LGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVAL 241 (362)
Q Consensus 162 ~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~ 241 (362)
+|||+.... .....+....+.. . ..+........++.+.+.....+..++++.|.+|++.|+++.|+.+...
T Consensus 312 ~~~~~~~~~-~~~~~~~~~~~~~--~-----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~ 383 (398)
T TIGR00895 312 LGPRVTALL-LLLGAVFAVLVGS--T-----LFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIG 383 (398)
T ss_pred cchHHHHHH-HHHHHHHHHHHHH--H-----hhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Confidence 999944433 3333333222221 0 1122333333444444443334455689999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy15226 242 AFGSFITTKFHILI 255 (362)
Q Consensus 242 ~ig~~~~~~~~~~~ 255 (362)
.+|..++|.+.|.+
T Consensus 384 ~~g~~~g~~~~G~l 397 (398)
T TIGR00895 384 RLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHhHHhc
Confidence 99999999998764
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.1e-16 Score=139.70 Aligned_cols=155 Identities=15% Similarity=0.137 Sum_probs=112.1
Q ss_pred HHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcc
Q psy15226 117 TSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQ 196 (362)
Q Consensus 117 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (362)
.....+.|.+..+.|.+ +.+.......++..++.++.|++.||+|+|+.+..+....+++.+.... .++.
T Consensus 233 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~--------~~~~ 302 (399)
T PRK05122 233 GTIATFITLYYAARGWD--GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWL--------APSP 302 (399)
T ss_pred HHHHHHHHHHHHHcccc--cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH--------hccH
Confidence 34455667776666654 4455667778888999999999999999999888877777766655544 1122
Q ss_pred hHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhHhHH
Q psy15226 197 YIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSV 276 (362)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~ 276 (362)
+..+....+.+.+.....+.......|..|++.|+++.++.+....+|..+++.+.|.+.+..|++..+++.+++.+++.
T Consensus 303 ~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 382 (399)
T PRK05122 303 WMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGL 382 (399)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 33333333444443222233335677889999999999999999999999999999999999999999988888777776
Q ss_pred hhhhe
Q psy15226 277 VFNYF 281 (362)
Q Consensus 277 ~~~~~ 281 (362)
++.++
T Consensus 383 ~~~~~ 387 (399)
T PRK05122 383 ALTWL 387 (399)
T ss_pred HHHHH
Confidence 55543
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.73 E-value=4e-16 Score=140.42 Aligned_cols=221 Identities=20% Similarity=0.189 Sum_probs=137.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhccCCChHHHHhcCCHHHHHHHHHhHcCCcccHHHHHHHHHHHHhhccccccchhhhc
Q psy15226 13 HVSYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGYLELL 92 (362)
Q Consensus 13 ~~~Wr~~f~~~~~~~~~~~~~~~~lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (362)
.++||+.|++.+++.++..+....+||+|++..+++ ++++.+.+.++.+
T Consensus 166 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~ 214 (394)
T TIGR00883 166 EWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQE-------------------------------KHKKKRGPIRETL 214 (394)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHh-------------------------------ccccccCCHHHHH
Confidence 458999999988877776666566788874311100 0011223455555
Q ss_pred cCcchhHHHHHHHHHHHHHhhhhHHHHHHhHHHHhh-hcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhh
Q psy15226 93 TNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLP-KLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFS 171 (362)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~ 171 (362)
+++. +..+.......... ........+.|.+.+ +.|.+..+.+.......++..++.++.|+++||+|||+.+...
T Consensus 215 ~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~ 291 (394)
T TIGR00883 215 TKHR--KPFLLGLGLVIATT-TTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIF 291 (394)
T ss_pred Hhch--HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHH
Confidence 5322 22333333322222 234556678888884 4588877788888888999999999999999999999987755
Q ss_pred hHhHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHH-HHHHHHHHHHHHH
Q psy15226 172 AALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCA-SVALAFGSFITTK 250 (362)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~-~~~~~ig~~~~~~ 250 (362)
..+..+........ . ....+.+.........+.+.....+...+++.|.+|++.|+++.++. +....+|+.++|.
T Consensus 292 ~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~ 367 (394)
T TIGR00883 292 TVLAALLAVPLLMA-L---LDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPY 367 (394)
T ss_pred HHHHHHHHHHHHHH-H---hcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHH
Confidence 44443332111110 0 01122233333333333333333344558999999999999999985 4556678889999
Q ss_pred HHHHHHHhhc-hhHHHHHHHHh
Q psy15226 251 FHILITKSLG-QHVIFFIYSSV 271 (362)
Q Consensus 251 ~~~~~~~~~g-~~~~~~~~~~~ 271 (362)
+.|.+.++.| |+..++.....
T Consensus 368 ~~g~l~~~~g~~~~~~~~~~~~ 389 (394)
T TIGR00883 368 IAAALVAMTGDWYAIGYYLAAL 389 (394)
T ss_pred HHHHHHHHcCcchhHHHHHHHH
Confidence 9999999888 76555544443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.7e-17 Score=149.68 Aligned_cols=153 Identities=10% Similarity=0.051 Sum_probs=106.9
Q ss_pred HHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhc--CCchhhhhhh--HhHHHHHHHHHHHHHHhcCC
Q psy15226 117 TSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDIL--GRKPLSCFSA--ALGCLLTFSTGLFYLYQGEL 192 (362)
Q Consensus 117 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--grr~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 192 (362)
.....++|.+.++.|.+..+.+...++.+++.+++.++.|+++||. ++|+....+. ...+++.+.+..
T Consensus 258 ~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~-------- 329 (455)
T TIGR00892 258 FAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCAL-------- 329 (455)
T ss_pred cchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 4455677888888899888888999999999999999999999984 3333333322 222222222221
Q ss_pred CCcchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc-hhHHHHHHHHh
Q psy15226 193 PNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLG-QHVIFFIYSSV 271 (362)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g-~~~~~~~~~~~ 271 (362)
.++.+..+....+.+.+.....+..++++.|.+|+++++++.|+.+....+|.+++|.+.|.+.+..| |+..|++.+++
T Consensus 330 ~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~ 409 (455)
T TIGR00892 330 AGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSI 409 (455)
T ss_pred hchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHH
Confidence 12233333334444444433344455788999999999999999999999999999999999988774 88888887776
Q ss_pred hHhHHh
Q psy15226 272 HFCSVV 277 (362)
Q Consensus 272 ~~i~~~ 277 (362)
.+++.+
T Consensus 410 ~li~~~ 415 (455)
T TIGR00892 410 VVSAGL 415 (455)
T ss_pred HHHHHH
Confidence 665544
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.6e-15 Score=136.61 Aligned_cols=156 Identities=13% Similarity=0.048 Sum_probs=114.1
Q ss_pred HHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcc
Q psy15226 117 TSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQ 196 (362)
Q Consensus 117 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (362)
.....+.|.++++.+.+ +.........++..++.++.|++.||+|+|+.+..+..+.+++.+.... . ++.
T Consensus 233 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~-------~-~~~ 302 (392)
T PRK12382 233 AVIGTFVSLYFASKGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWL-------A-PTA 302 (392)
T ss_pred hHHHHHHHHHHHhcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHH-------c-ccH
Confidence 34456667777766665 3455566677788899999999999999999988888777777665443 1 122
Q ss_pred hHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhHhHH
Q psy15226 197 YIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSV 276 (362)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~ 276 (362)
........+.+.+.....+...+...|.+|+++|+++.|+.+....+|..++|.+.+.+.++.||+..+.+.+++.+++.
T Consensus 303 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 382 (392)
T PRK12382 303 WVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGI 382 (392)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 33333333444333222333336778889999999999999999999999999999999999999999998888877776
Q ss_pred hhhhee
Q psy15226 277 VFNYFY 282 (362)
Q Consensus 277 ~~~~~~ 282 (362)
++....
T Consensus 383 ~~~~~~ 388 (392)
T PRK12382 383 IVTILS 388 (392)
T ss_pred HHHHhh
Confidence 655433
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.3e-16 Score=145.25 Aligned_cols=256 Identities=14% Similarity=0.097 Sum_probs=145.8
Q ss_pred chhhHHHHhhhh-hhhHHHHHHHHHHHHHHHHHhhc-cCCChHHHHhcCCHHHHHHHHHhHcCCcccHHHHHHHHHHHHh
Q psy15226 2 VGTLAILLIGNH-VSYNSLNIALSILPVIFFILFSF-VPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQ 79 (362)
Q Consensus 2 ~G~~~~~~l~~~-~~Wr~~f~~~~~~~~~~~~~~~~-lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ 79 (362)
+|++++..+... .|||+.|++.++++++..++++. .||+|+. +++.++.++ +..++..++.+
T Consensus 182 i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~---~~~~~~~~~-------------~~i~~~~~~~~ 245 (465)
T TIGR00894 182 IFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSI---HPCISKFEK-------------KYINSSLQGQK 245 (465)
T ss_pred HHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCccc---CCCCCHHHH-------------HHHHhhccccc
Confidence 345555555555 49999999999998887776655 6788852 111111110 00000000000
Q ss_pred hccccccchhhhccCcchhHHHHHHHHHHHHHhhhhHHHHHHhHHHHhhhc-CCCCCchhHHHHHHHHHHHHHHHHHHHH
Q psy15226 80 EDLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKL-DNAYFGPDQCILVFMIIMFLSNFLQAPL 158 (362)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l 158 (362)
++.+.+.+++++++++..+ ......+....+.+.+..|+|.++++. |.+..+.++...+..++..++.+++|++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l 320 (465)
T TIGR00894 246 GSTRQSLPIKAIPKSLPVW-----AIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYL 320 (465)
T ss_pred CCCCCCCCHHHHhcCHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 0112234577777754322 222222333334567788999998764 8888888888899999999999999999
Q ss_pred hhhcCCchhhhh---hhHhHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhH
Q psy15226 159 MDILGRKPLSCF---SAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASS 235 (362)
Q Consensus 159 ~dr~grr~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~ 235 (362)
+||+++|+.... ......++.....................+..+.+.+.+.....+..+....|..|. .+|.+.+
T Consensus 321 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g 399 (465)
T TIGR00894 321 ADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-FLGFIKG 399 (465)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-HHHHHHH
Confidence 999865532211 001111111100000000000111222222222222222222223333455677665 8999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh---chhHHHHHHHHhhHhHHhhh
Q psy15226 236 CASVALAFGSFITTKFHILITKSL---GQHVIFFIYSSVHFCSVVFN 279 (362)
Q Consensus 236 ~~~~~~~ig~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~i~~~~~ 279 (362)
+.+..+.+++.++|.+.|.+.+.. +|...|.+.++..+++.++.
T Consensus 400 ~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~ 446 (465)
T TIGR00894 400 ITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFY 446 (465)
T ss_pred HHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHe
Confidence 999999999999999999887643 37778888887777776554
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-15 Score=136.95 Aligned_cols=231 Identities=12% Similarity=0.059 Sum_probs=153.3
Q ss_pred chhhHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhccCCChHHHHhcCCHHHHHHHHHhHcCCcccHHHHHHHHHHHHhhc
Q psy15226 2 VGTLAILLIGNHVSYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQED 81 (362)
Q Consensus 2 ~G~~~~~~l~~~~~Wr~~f~~~~~~~~~~~~~~~~lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (362)
+|+++++.+.+.+|||..|++.+...++..+ .+.++|+++ .+++ ++ + ++
T Consensus 143 ~g~~l~g~l~~~~g~~~~f~~~~~~~~~~~~-~~~~~~~~~---~~~~-~~------------~--------------~~ 191 (382)
T TIGR00902 143 IGSALFGGLIGMFDEQNILAILTAGLAFMLI-GFLIKPTIP---PKDA-IP------------E--------------DE 191 (382)
T ss_pred HHHHHHHHHHHHcChhHHHHHHHHHHHHHHH-HHHcCCCCC---CCcc-cc------------c--------------cc
Confidence 4666667777778999999887765333333 333344321 0000 00 0 00
Q ss_pred cccccchhhhccCcchhHHHHHHHHHHHHHhhhhHHHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhh
Q psy15226 82 LKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDI 161 (362)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr 161 (362)
..+..+.++++|+|+.+...+...+.. ........+.|.++++.|.+....+.......+..+++.++.+++.||
T Consensus 192 ~~~~~~~~~~l~~~~~~~~l~~~~l~~-----~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r 266 (382)
T TIGR00902 192 SQGDSAFIALLKNPMNLRFLAAVCLIQ-----GAHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQN 266 (382)
T ss_pred cccchhHHHHHcChHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhh
Confidence 011223567777654433332222211 123555667788888889998888888888889999999999999999
Q ss_pred cCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHH-HH
Q psy15226 162 LGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCAS-VA 240 (362)
Q Consensus 162 ~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~-~~ 240 (362)
+|+|+.+.++.+...+....+.. .++.+..+....+.+..+....+....++.+. |+++|+++.++++ ..
T Consensus 267 ~g~~~~l~~~~~~~~~~~~~~~~--------~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~ 337 (382)
T TIGR00902 267 CSARDLLLISAIACVGRWAIIGA--------IEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALA 337 (382)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHh--------HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHH
Confidence 99999999998888888777654 12334444445555555522233344788887 9999999999986 45
Q ss_pred HHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhHhHHhh
Q psy15226 241 LAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSVVF 278 (362)
Q Consensus 241 ~~ig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~ 278 (362)
..+|..+++.+.|.+.++.|. ..|+..+++.+++.++
T Consensus 338 ~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 338 MGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence 679999999999999999986 5677777777666443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.1e-16 Score=142.95 Aligned_cols=163 Identities=12% Similarity=0.002 Sum_probs=127.1
Q ss_pred HHHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCc
Q psy15226 116 ITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNF 195 (362)
Q Consensus 116 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (362)
......+.|.+.++.|.+..+.++..+...++..++.++.|+++||+|||+++.++.++.+++.+.... .++
T Consensus 39 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~--------~~~ 110 (434)
T PRK11663 39 RKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGF--------SSS 110 (434)
T ss_pred hhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHH--------HhH
Confidence 345677889999999999888899999999999999999999999999999999999888888877655 112
Q ss_pred chHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhHhH
Q psy15226 196 QYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCS 275 (362)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~ 275 (362)
.+...+...+.+.+.+...+....++.|.+|+++|++++++.+....+|..+++.+.+.+.+..||++.|.+.+++.++.
T Consensus 111 ~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~ 190 (434)
T PRK11663 111 LWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVV 190 (434)
T ss_pred HHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 22323333333333322234444889999999999999999999999999999999999999999999998887766655
Q ss_pred HhhhheeeccC
Q psy15226 276 VVFNYFYLMET 286 (362)
Q Consensus 276 ~~~~~~~~~e~ 286 (362)
.++..+.+||+
T Consensus 191 ~~~~~~~~~~~ 201 (434)
T PRK11663 191 GLFLCWRLRDK 201 (434)
T ss_pred HHHHHHHcCCC
Confidence 44444455654
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.2e-15 Score=140.76 Aligned_cols=241 Identities=10% Similarity=0.034 Sum_probs=146.0
Q ss_pred hHHHHhhh-hhhhHHHHHHHHHHHHHHHHHhhccCCChHHHHhcCCHHHHHHHHHhHcCCcccHHHHHHHHHHHHhhccc
Q psy15226 5 LAILLIGN-HVSYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLK 83 (362)
Q Consensus 5 ~~~~~l~~-~~~Wr~~f~~~~~~~~~~~~~~~~lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (362)
.++..+.+ ..|||..|++.++..++..+..+++||+|+. +++ ++ + .+ +.
T Consensus 161 ~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~~~e~~~~---~~~-~~------------~-~~-------------~~ 210 (491)
T PRK11010 161 GLALWLADRYLGWQGMYWLMAALLIPCIIATLLAPEPTDT---IPV-PK------------T-LE-------------QA 210 (491)
T ss_pred HHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhcCCCccc---ccc-cc------------c-hh-------------hh
Confidence 33334445 4699999999998888776666668887631 000 00 0 00 00
Q ss_pred cccchhhhccCcchhHHHHHHHHHHHHHhhhhHHHHHHhHHHHh-hhcCCCCCchhHHH-HHHHHHHHHHHHHHHHHhhh
Q psy15226 84 SKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLL-PKLDNAYFGPDQCI-LVFMIIMFLSNFLQAPLMDI 161 (362)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~-~~~~~~~~~~~~~~g~l~dr 161 (362)
...++++.++++..+......+.... +......+.+.++ ++.|++..+.+... ....++.+++.+++|+++||
T Consensus 211 ~~~~l~~~~~~~~~~~~ll~~~l~~~-----~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr 285 (491)
T PRK11010 211 VVAPLRDFFGRNNAWLILLLIVLYKL-----GDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQR 285 (491)
T ss_pred HHHHHHHHHcCcCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11235556654433322222211111 1223334445554 45699877777776 45567999999999999999
Q ss_pred cCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHh-hcccccchhhcccCCCcchhhhhhHHHHHH
Q psy15226 162 LGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASY-YGIGCLPNILVSELFPINVRCQASSCASVA 240 (362)
Q Consensus 162 ~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~ 240 (362)
+|+|+.+..+..+.++..+.+..... ...+.........+..... .+... .+++..+..+++.+++..++.+..
T Consensus 286 ~g~~~~l~i~~~l~~l~~l~~~~l~~----~~~~~~~l~~~~~l~~~~~g~~~~~-~~a~~~~l~~~~~~~t~~gl~~s~ 360 (491)
T PRK11010 286 LSLFRALMIFGILQGVSNAGYWLLSI----TDKNLYSMGAAVFFENLCGGMGTAA-FVALLMTLCNKSFSATQFALLSAL 360 (491)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHh----ccccHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCCCcHHHHHHHHHH
Confidence 99988777665554544433221110 1112222121222211111 22222 347788889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhHhHHhhhheeeccC
Q psy15226 241 LAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFNYFYLMET 286 (362)
Q Consensus 241 ~~ig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~ 286 (362)
..+|..+++.+.|.+.+..||+..|.+.+++.+.+.+... ..+++
T Consensus 361 ~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~-~~~~~ 405 (491)
T PRK11010 361 SAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLL-VCRQT 405 (491)
T ss_pred HHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH-HHHhc
Confidence 9999999999999999999999888888888777765553 34443
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-15 Score=137.47 Aligned_cols=164 Identities=16% Similarity=0.078 Sum_probs=131.7
Q ss_pred HHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcc
Q psy15226 117 TSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQ 196 (362)
Q Consensus 117 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (362)
.......|.+.++.|.+..+.++..+...++..++.++.|+++||+|||+.+..+.++.+++...+.+ ..+.
T Consensus 11 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~--------~~~~ 82 (399)
T TIGR00893 11 ANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAF--------AGAY 82 (399)
T ss_pred HhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHH--------HcCH
Confidence 45566677788888999899999999999999999999999999999999999998888888777655 1233
Q ss_pred hHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhHhHH
Q psy15226 197 YIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSV 276 (362)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~ 276 (362)
+...+...+.+.+.....+....++.|.+|+++|+++.++.+....+|..+++.+.+.+.++.+|++.|.+.+++.++..
T Consensus 83 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 162 (399)
T TIGR00893 83 VSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWG 162 (399)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence 44444444444444334455558999999999999999999999999999999999999999999999998888777766
Q ss_pred hhhheeeccCCC
Q psy15226 277 VFNYFYLMETKQ 288 (362)
Q Consensus 277 ~~~~~~~~e~~~ 288 (362)
++.++..||+++
T Consensus 163 ~~~~~~~~~~~~ 174 (399)
T TIGR00893 163 VLWLKFIPDPPQ 174 (399)
T ss_pred HHhhheecCCCC
Confidence 666566666543
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.9e-16 Score=135.79 Aligned_cols=182 Identities=12% Similarity=0.037 Sum_probs=150.9
Q ss_pred chhHHHHHHHHHHHHHhhhhHHHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhH
Q psy15226 96 SNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALG 175 (362)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~ 175 (362)
+++.++++...+.....+..--.+..-.|.+.++.++|..+.+.+.+.+.+.+.++.++.|.++||.+.|..+.++++++
T Consensus 25 ~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLils 104 (448)
T COG2271 25 RWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILS 104 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHH
Confidence 45566666666666555444566777889999888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHh-hcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHH--
Q psy15226 176 CLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASY-YGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFH-- 252 (362)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~-- 252 (362)
++..+++++ .++.....++..+-+... .++.|+. ..++..+|+++||+..++.+...++|+.+.|.+.
T Consensus 105 ai~nil~Gf--------s~s~~~~~~l~~lng~fQg~Gwpp~~-~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~l 175 (448)
T COG2271 105 AIVNILFGF--------SPSLFLFAVLWVLNGWFQGMGWPPCA-RTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALL 175 (448)
T ss_pred HHHHHHHhh--------hhHHHHHHHHHHHHHHHhcCCCcHHH-HHHHHHcCccccCceEEEehhhhhcccchHHHHHHH
Confidence 999999887 223344444445555555 7777776 8999999999999999999999999999999999
Q ss_pred HHHHHhhchhHHHHHHHHhhHhHHhhhheeeccC
Q psy15226 253 ILITKSLGQHVIFFIYSSVHFCSVVFNYFYLMET 286 (362)
Q Consensus 253 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~ 286 (362)
+.+..+.+|+..|++-++++++..++.++..+++
T Consensus 176 a~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~ 209 (448)
T COG2271 176 AFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDR 209 (448)
T ss_pred HHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 8888888999999999998888877776666554
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.6e-15 Score=137.36 Aligned_cols=236 Identities=13% Similarity=0.075 Sum_probs=143.9
Q ss_pred chhhHHHHhhhhhhhHHHHHHHHHHHHHHHHHhh-ccCCChHHHHhcCCHHHHHHHHHhHcCCcccHHHHHHHHHHHHhh
Q psy15226 2 VGTLAILLIGNHVSYNSLNIALSILPVIFFILFS-FVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQE 80 (362)
Q Consensus 2 ~G~~~~~~l~~~~~Wr~~f~~~~~~~~~~~~~~~-~lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (362)
+|+.++..+....+||+.|++.+++.++..+..+ ++||+++. .++ + ...+
T Consensus 157 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~---------------~~~~---------- 207 (408)
T PRK09874 157 LGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIRENFQP---VSK-K---------------EMLH---------- 207 (408)
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCccc---ccc-h---------------hhhH----------
Confidence 3555555566667999999999988777665444 46765420 000 0 0000
Q ss_pred ccccccchhhhccCcchhHHHHHHHHHHHHHhhhhHHHHHHhHHHHhhhcCCCCCc----hhHHHHHHHHHHHHHHHHHH
Q psy15226 81 DLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFG----PDQCILVFMIIMFLSNFLQA 156 (362)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~~~~~~~~~~~~~~g 156 (362)
..+..+.+++++............. . .......+.+.+..+.+.+..+ .+....+.+++..++.+..|
T Consensus 208 ----~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g 279 (408)
T PRK09874 208 ----MREVVTSLKNPKLVLSLFVTTLIIQ---V-ATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLG 279 (408)
T ss_pred ----HHHHHHhCcCCchHHHHHHHHHHHH---H-HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0011223343333222222111111 1 1223344556666554322222 23344556677888899999
Q ss_pred HHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHH
Q psy15226 157 PLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSC 236 (362)
Q Consensus 157 ~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~ 236 (362)
+++||+|||+.+..+.....++.+.... .+..+...+...+.+.+.....+...+++.+..|++.||+..++
T Consensus 280 ~l~dr~g~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 351 (408)
T PRK09874 280 KLGDRIGPEKILITALIFSVLLLIPMSF--------VQTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSY 351 (408)
T ss_pred HHHhccccchhHHHHHHHHHHHHHHHHH--------hccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehH
Confidence 9999999999988877766665554433 11223333333333333333334444677788899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhHhHHhhhhee
Q psy15226 237 ASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFNYFY 282 (362)
Q Consensus 237 ~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 282 (362)
.+....+|..++|.+.|.+.++.|++..|.+.+++.+++.++.++.
T Consensus 352 ~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~ 397 (408)
T PRK09874 352 NQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNS 397 (408)
T ss_pred HHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999888888776665443
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.6e-15 Score=133.08 Aligned_cols=226 Identities=12% Similarity=0.120 Sum_probs=134.4
Q ss_pred hhhHHHHhhhhhhhHHHHHHHHHHHHHHHHH-hhccCCChHHHHhcCCHHHHHHHHHhHcCCcccHHHHHHHHHHHHhhc
Q psy15226 3 GTLAILLIGNHVSYNSLNIALSILPVIFFIL-FSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQED 81 (362)
Q Consensus 3 G~~~~~~l~~~~~Wr~~f~~~~~~~~~~~~~-~~~lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (362)
|+.++..+....+||+.|++.+++.++..+. .+++||.++ +.+ .+ .+
T Consensus 143 g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~----~~~--------------~~-~~------------- 190 (382)
T PRK10091 143 GIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIRD----EAK--------------GG-LR------------- 190 (382)
T ss_pred hccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCCc----ccc--------------cC-HH-------------
Confidence 4555666666779999999999887776554 344888642 000 00 00
Q ss_pred cccccchhhhccCcchhHHHHHHHHHHHHHhhhhHHHHHHhHHHHhhh-cCCCCCchhHHHHHHHHHHHHHHHHHHHHhh
Q psy15226 82 LKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPK-LDNAYFGPDQCILVFMIIMFLSNFLQAPLMD 160 (362)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d 160 (362)
.. .+.++++..+. ... .... ...+......+.+.++.+ .|.+..+.+.......++..++.++.+++.|
T Consensus 191 ----~~-~~~~~~~~~~~-~~~---~~~~-~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~ 260 (382)
T PRK10091 191 ----EQ-FHFLRSPAPWL-IFA---ATMF-GNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSG 260 (382)
T ss_pred ----HH-HHHhcChHHHH-HHH---HHHH-HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheecc
Confidence 00 11233322211 111 1111 111223334455555554 5888788888899999999999999999999
Q ss_pred hcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHh-hcccccchhhcccCCCcchhhhhhHHHHH
Q psy15226 161 ILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASY-YGIGCLPNILVSELFPINVRCQASSCASV 239 (362)
Q Consensus 161 r~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~~p~~~r~~~~~~~~~ 239 (362)
|+|+|+.+..+..+.+++.+.+... .+..+.......+.+.+. ....+.......+..|.+.++.+ ..+.
T Consensus 261 r~~~~~~~~~~~~~~~i~~~~~~~~-------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 331 (382)
T PRK10091 261 RYSPLRIAAVTDFIIVLALLMLFFF-------GGMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQI 331 (382)
T ss_pred ccCchhHHHHHHHHHHHHHHHHHHH-------HhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHH
Confidence 9999998888777766665544320 112222233333333333 22222222344454555555544 3466
Q ss_pred HHHHHHHHHHHHHHHHHHh-hchhHHHHHHHHhhHhHHhhh
Q psy15226 240 ALAFGSFITTKFHILITKS-LGQHVIFFIYSSVHFCSVVFN 279 (362)
Q Consensus 240 ~~~ig~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~i~~~~~ 279 (362)
...+|..++|.+.|.+.+. .+++..+.+.++++++.....
T Consensus 332 ~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (382)
T PRK10091 332 AFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSL 372 (382)
T ss_pred HHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHH
Confidence 7889999999999999985 678888887766666554443
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.6e-15 Score=139.60 Aligned_cols=154 Identities=10% Similarity=0.007 Sum_probs=96.3
Q ss_pred HHHHHhHHHHhhh-cCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCch-------hhhhhhHhHHHHHHHHHHHHHH
Q psy15226 117 TSMITYSSTLLPK-LDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKP-------LSCFSAALGCLLTFSTGLFYLY 188 (362)
Q Consensus 117 ~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~-------~~~~~~~~~~~~~~~~~~~~~~ 188 (362)
.....+.|.++.+ .|++..+++...++..++..++.+++|+++||++||. .......+.++..+.+..
T Consensus 269 ~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~---- 344 (476)
T PLN00028 269 LTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGR---- 344 (476)
T ss_pred HHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcc----
Confidence 3455677777655 4998888888999999999999999999999998762 111122222221211111
Q ss_pred hcCCCCcchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHH
Q psy15226 189 QGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIY 268 (362)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~~~ 268 (362)
..+.......+.+++.+.....+..+++..|.. ++.||++.|+.+..+.+|+.+++.+.+ ..+..+|...|.+.
T Consensus 345 ----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~ 418 (476)
T PLN00028 345 ----ANSLGAAIVVMILFSIFVQAACGATFGIVPFVS-RRSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLM 418 (476)
T ss_pred ----cchHHHHHHHHHHHHHHHHHhhhhhcccCcccC-hhhchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHH
Confidence 112222222233333332222223446667765 468999999998888888888887764 21234588888888
Q ss_pred HHhhHhHHhhhh
Q psy15226 269 SSVHFCSVVFNY 280 (362)
Q Consensus 269 ~~~~~i~~~~~~ 280 (362)
+++.+++.++.+
T Consensus 419 ~~~~~i~~~~~~ 430 (476)
T PLN00028 419 GVMIIACTLPVA 430 (476)
T ss_pred HHHHHHHHHHHH
Confidence 877777765553
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.5e-15 Score=134.28 Aligned_cols=161 Identities=12% Similarity=0.024 Sum_probs=127.2
Q ss_pred HHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcch
Q psy15226 118 SMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQY 197 (362)
Q Consensus 118 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (362)
......|.+.++.|.+..+.++..+...++..++.++.|.++||+|||+++..+..+.+++.+.+.+ .++.+
T Consensus 27 ~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--------~~~~~ 98 (390)
T PRK03545 27 VPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSAL--------AWNFT 98 (390)
T ss_pred HHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHH--------hccHH
Confidence 3444578888899999999999999999999999999999999999999999999888888877665 12333
Q ss_pred HHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhHhHHh
Q psy15226 198 IPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSVV 277 (362)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~ 277 (362)
..++.....+.+.....+...+++.|.+|+++|+++.|+......+|..++|.+.+.+.++.||++.|++.+++.++..+
T Consensus 99 ~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~ 178 (390)
T PRK03545 99 VLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLL 178 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHH
Confidence 33333333333323333444578899999999999999999999999999999999998989999999998887777655
Q ss_pred hhheeeccC
Q psy15226 278 FNYFYLMET 286 (362)
Q Consensus 278 ~~~~~~~e~ 286 (362)
..+...||.
T Consensus 179 ~~~~~~~~~ 187 (390)
T PRK03545 179 LLIKLLPLL 187 (390)
T ss_pred HHHHhCCCC
Confidence 554555654
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.6e-15 Score=136.80 Aligned_cols=165 Identities=18% Similarity=0.139 Sum_probs=129.2
Q ss_pred hHHHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCC
Q psy15226 115 GITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPN 194 (362)
Q Consensus 115 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (362)
.......+.|.+.++.|.+..+.++..+...++..++.++.|+++||+|||+.+..+..+..++.+.... ..
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~--------~~ 103 (398)
T TIGR00895 32 DLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCAL--------AT 103 (398)
T ss_pred HHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHH--------cc
Confidence 3455667788888888999888889999999999999999999999999999999988888877766654 12
Q ss_pred cchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhHh
Q psy15226 195 FQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFC 274 (362)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i 274 (362)
+....++...+.+.+.....+...+++.|.+|++.|+++.++.+....+|..+++.+.+.+.+..||+..+++.+++..+
T Consensus 104 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~ 183 (398)
T TIGR00895 104 NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLL 183 (398)
T ss_pred chHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHH
Confidence 33333333344443333344555689999999999999999999999999999999999999999999888887666666
Q ss_pred HHhhhheeeccCC
Q psy15226 275 SVVFNYFYLMETK 287 (362)
Q Consensus 275 ~~~~~~~~~~e~~ 287 (362)
..++...+.||+.
T Consensus 184 ~~~~~~~~~~~~~ 196 (398)
T TIGR00895 184 LLLLLMRFLPESI 196 (398)
T ss_pred HHHHHHHhCCCCC
Confidence 6555556677764
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.6e-15 Score=129.36 Aligned_cols=161 Identities=14% Similarity=0.093 Sum_probs=141.1
Q ss_pred HHHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCc
Q psy15226 116 ITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNF 195 (362)
Q Consensus 116 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (362)
-+.....+|.+.+++|.+...+++..+.+.++..+++++...+.||+.||++++....++.++.++.++ ..+
T Consensus 29 Efv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~al--------Ap~ 100 (394)
T COG2814 29 EFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSAL--------APS 100 (394)
T ss_pred HHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHH--------hcc
Confidence 366777889999999999999999999999999999999999999999999999999999999999888 233
Q ss_pred chHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhHhH
Q psy15226 196 QYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCS 275 (362)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~ 275 (362)
....++...+.+...+.+.++..+...++.|+++|++++++......+...++..++.++-+.+|||..|+..+++.++.
T Consensus 101 f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~ 180 (394)
T COG2814 101 FAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLA 180 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34444444444444455556666899999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhhheeec
Q psy15226 276 VVFNYFYLM 284 (362)
Q Consensus 276 ~~~~~~~~~ 284 (362)
.+..+..+|
T Consensus 181 ~~~~~~~lP 189 (394)
T COG2814 181 LLLLWKLLP 189 (394)
T ss_pred HHHHHHhCC
Confidence 888888888
|
|
| >KOG2533|consensus | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.1e-16 Score=141.84 Aligned_cols=240 Identities=13% Similarity=0.087 Sum_probs=133.3
Q ss_pred chhhHHHHh------hhhhhhHHHHHHHHHHHHHHHHHhhc-cCCChH--HHHhcCCHHHHHHHHHhHcCCcccHHHHHH
Q psy15226 2 VGTLAILLI------GNHVSYNSLNIALSILPVIFFILFSF-VPETPH--FHAAKNNLKKTEKSLKWYRGNKKDVMEEMN 72 (362)
Q Consensus 2 ~G~~~~~~l------~~~~~Wr~~f~~~~~~~~~~~~~~~~-lpesp~--~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~ 72 (362)
+|.++++.+ ....||||.|++.++++++..++.++ +|+.|. |..++++.+-+ .++.+..+.
T Consensus 185 ~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~~---~~~~~~~~~------- 254 (495)
T KOG2533|consen 185 FGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEKELV---VERLRESPS------- 254 (495)
T ss_pred HHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChhhccccchHHHHHH---HHHHHhccC-------
Confidence 344555554 23349999999999999999887666 999996 22111111100 111111110
Q ss_pred HHHHHHhhccccccchhhhccCcchhHHHHHHHHHHHHHhhhhHHHHHHhHHHHhhh-cCCCCCchhHHHHHHHHHHHHH
Q psy15226 73 SIMDKTQEDLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPK-LDNAYFGPDQCILVFMIIMFLS 151 (362)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~ 151 (362)
...+++.++..+++.+++|+.+...+. .++.....+++.+|+|.++++ .|++..++..+.++..++++++
T Consensus 255 ----~~~~~~~~~~~~~~a~~dp~vw~~~l~-----~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~ 325 (495)
T KOG2533|consen 255 ----GGIENKFKWKGFKEALKDPGVWPFSLC-----YFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVG 325 (495)
T ss_pred ----CCcccccCHHHHHHHHhchhHHHHHHH-----HHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHH
Confidence 000111334556777776544433222 222222347789999999998 4688889999999999999999
Q ss_pred HHHHHHHhhh----cCCchhhhhhhHhHHHHH-HHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhcccccchhhcccCCC
Q psy15226 152 NFLQAPLMDI----LGRKPLSCFSAALGCLLT-FSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFP 226 (362)
Q Consensus 152 ~~~~g~l~dr----~grr~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p 226 (362)
.+++|+++|| ..+|........+..+.. +.+.. ................+.....++.....++...
T Consensus 326 ~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~ 397 (495)
T KOG2533|consen 326 LILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLLA--------AAVLPGAYGAFLIGPYGLIATAIIALSWTSANLA 397 (495)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHh--------hccchHHhHHHHhcchhhHHHHHHHHhhcccccc
Confidence 9999999999 555555555444444433 22222 1111111111111111112233444466666665
Q ss_pred cchhh-hhhHHHHHHHHHHHHHHHHHHHHH-HHhhchhHHHHHH
Q psy15226 227 INVRC-QASSCASVALAFGSFITTKFHILI-TKSLGQHVIFFIY 268 (362)
Q Consensus 227 ~~~r~-~~~~~~~~~~~ig~~~~~~~~~~~-~~~~g~~~~~~~~ 268 (362)
.+.|. +..+......+.++.+++.+.... ...++|...|...
T Consensus 398 g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~~ 441 (495)
T KOG2533|consen 398 GNTKALTTVSAIIDGTGSAGAISGQLFRSLDAPRYGWGAVFYML 441 (495)
T ss_pred chHHhHHHHhhhhcchhHHHHhhhhhcccccCcchhhhhHHHHH
Confidence 55544 444444555666666666655332 2335666666433
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.66 E-value=8e-15 Score=131.97 Aligned_cols=229 Identities=8% Similarity=-0.012 Sum_probs=137.5
Q ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHhhccCCChHHHHhcCCHHHHHHHHHhHcCCcccHHHHHHHHHHHHhhccccccch
Q psy15226 9 LIGNHVSYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGY 88 (362)
Q Consensus 9 ~l~~~~~Wr~~f~~~~~~~~~~~~~~~~lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (362)
.+.+.+|||..|++.++..++..+..++++|+++ .+++ + .+ .+..+.
T Consensus 155 ~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~~~~---~~~~--~--------------~~--------------~~~~~~ 201 (390)
T TIGR02718 155 VLFGKFGQRPAFLLVACVPLASLVCVLWLKDRAV---ASPE--A--------------PL--------------ARRASL 201 (390)
T ss_pred HHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCCCc---Cccc--c--------------ch--------------hhHHHH
Confidence 3455679999999999888876666555544321 0000 0 00 011235
Q ss_pred hhhccCcchhHHHHHHHHHHHHHhhhhHHHHHHhHHHHhhhcCCCCCchhHHHHHHH-HHHHHHHHHHHHHhhhcCCchh
Q psy15226 89 LELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFM-IIMFLSNFLQAPLMDILGRKPL 167 (362)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~g~l~dr~grr~~ 167 (362)
++.+|+|..+......+.... +......+.+.++++.|++.++.+......+ ....++.+++|++.||+|+|+.
T Consensus 202 ~~~l~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~ 276 (390)
T TIGR02718 202 FRFFRRPLAWSLLALALLSAM-----TAVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRT 276 (390)
T ss_pred HHHHcCcCHHHHHHHHHHHHH-----HHHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 567776544333332222221 1233444667777888999888887777665 4667788999999999999998
Q ss_pred hhhhhHhHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHh-hcccccchhhcccCCCc-chhhhhhHHHHHHHHHHH
Q psy15226 168 SCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASY-YGIGCLPNILVSELFPI-NVRCQASSCASVALAFGS 245 (362)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~~p~-~~r~~~~~~~~~~~~ig~ 245 (362)
+..+....++......... .. .................... ...... .+...+..++ +.+++.+++.+...++|.
T Consensus 277 l~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~lg~ 353 (390)
T TIGR02718 277 FILGVGLAGSLALLWFAQA-AF-WLAPGIAVAWSCSAFGSLITGITSVAI-YTAFMRFAGDGDQAGTDVTAVQSTRDLGE 353 (390)
T ss_pred HHHHHHHHHHHHHHHHHHH-Hc-ccCCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCcccchHHHHHHHHHHHHHHH
Confidence 8876665533322221100 00 00111111111112212222 222222 3455555555 889999999999999999
Q ss_pred HHHHHHHHHHHHhhchhHHHHHHHHhhHhHHhh
Q psy15226 246 FITTKFHILITKSLGQHVIFFIYSSVHFCSVVF 278 (362)
Q Consensus 246 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~ 278 (362)
.++|.+.|.+.+..|++..|...+++.+++.++
T Consensus 354 ~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~~ 386 (390)
T TIGR02718 354 LIASSIAGYLTDRFGYAGGFLSGTVLAVLAILL 386 (390)
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence 999999999999999988888777766665443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.5e-15 Score=132.81 Aligned_cols=237 Identities=10% Similarity=0.035 Sum_probs=143.0
Q ss_pred hhhHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhc-cCCChHHHHhcCCHHHHHHHHHhHcCCcccHHHHHHHHHHHHhhc
Q psy15226 3 GTLAILLIGNHVSYNSLNIALSILPVIFFILFSF-VPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQED 81 (362)
Q Consensus 3 G~~~~~~l~~~~~Wr~~f~~~~~~~~~~~~~~~~-lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (362)
|+++++.+. ..+||+.|++.++++++..++.+. .||+|+. ++.++ ..+ + +++
T Consensus 149 g~~~~g~l~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~----~~~-~--------------~~~ 201 (396)
T TIGR00882 149 CASIAGILF-SIDPQIVFWLGSGFALILMLLLMFAKPKAPSS-------ATVAN----ALG-A--------------NAS 201 (396)
T ss_pred HHHHHhhhh-ccCchHHHHHHHHHHHHHHHHHHHhCCCCchh-------hhhhc----ccc-c--------------ccC
Confidence 444444443 349999999999888887665554 5555421 00000 000 0 001
Q ss_pred cccccchhhhccCcchhHHHHHHHHHHHHHhhhhHHHHHHhHHHHhhhc----CCCCCchhHHHHHHHHHHHHHHHHHHH
Q psy15226 82 LKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKL----DNAYFGPDQCILVFMIIMFLSNFLQAP 157 (362)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~g~ 157 (362)
+.+..+.++.+|+|..+...+..+.... .+.....+.+.+.++. +.+....+...+...+...++.+..++
T Consensus 202 ~~~~~~~~~~l~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~ 276 (396)
T TIGR00882 202 AFSLKLALELFRQRKFWMFVLYVVGVAC-----VYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPL 276 (396)
T ss_pred CCCHHHHHHHHcCCcHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122345677777544332222221111 1222333344444432 344344566777778888889999999
Q ss_pred HhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHH-
Q psy15226 158 LMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSC- 236 (362)
Q Consensus 158 l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~- 236 (362)
+.||+|||+.+.++..+.++....... ..+.+.......+.+.+..........+..+..|++.++++.+.
T Consensus 277 l~~r~g~~~~l~~~~~l~~l~~~~~~~--------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~ 348 (396)
T TIGR00882 277 IINRIGAKNALLIAGTIMSVRIIGSSF--------ATTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIG 348 (396)
T ss_pred HHHHhccchhHHHHHHHHHHHHHHHHh--------cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHH
Confidence 999999999988888777776655433 12333333333333333311112223566777888888887766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhHhHHhhh
Q psy15226 237 ASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFN 279 (362)
Q Consensus 237 ~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~ 279 (362)
.+....+|+.+++.+.|.+.+..|++.+|.+.+++.++..++.
T Consensus 349 ~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~ 391 (396)
T TIGR00882 349 FQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLIS 391 (396)
T ss_pred HHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 5678899999999999999999999999988888877665554
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1e-14 Score=130.89 Aligned_cols=229 Identities=11% Similarity=0.031 Sum_probs=145.4
Q ss_pred chhhHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhccCCChHHHHhcCCHHHHHHHHHhHcCCcccHHHHHHHHHHHHhhc
Q psy15226 2 VGTLAILLIGNHVSYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQED 81 (362)
Q Consensus 2 ~G~~~~~~l~~~~~Wr~~f~~~~~~~~~~~~~~~~lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (362)
+|++++..+.+.+|||..|++.++..++..+...+.||.++ +++.++ +.
T Consensus 143 igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~----~~~~~~---------------------------~~ 191 (382)
T PRK11128 143 IGSALTGKLVSWFGEQAILWILTAGVASMLLGQLLRPTIMP----QGESRQ---------------------------QE 191 (382)
T ss_pred HHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHccCCCCC----cccccc---------------------------cc
Confidence 57777777878889999999888765555444444565421 000000 00
Q ss_pred cccccchhhhccCcchhHHHHHHHHHHHHHhhhhHHHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhh
Q psy15226 82 LKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDI 161 (362)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr 161 (362)
++...++++++|+|..+......++... .......+.|.+.++.|.+..+.+.......++..+..++.+++.||
T Consensus 192 ~~~~~~~~~i~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r 266 (382)
T PRK11128 192 SAGWPAWKALLKEPTVWRFLLCVSLLQG-----SHAAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRR 266 (382)
T ss_pred ccccchHHHHHcChhHHHHHHHHHHHHH-----HhHhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0112356777876544433332222222 12344556677777788887777888888888899999999999999
Q ss_pred cCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHH-HH
Q psy15226 162 LGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCAS-VA 240 (362)
Q Consensus 162 ~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~-~~ 240 (362)
+|+|+.+..+....+++.+.... .++.+..+....+.+.+.....+....+..+. +++++++..++.+ ..
T Consensus 267 ~~~~~~l~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 337 (382)
T PRK11128 267 WSARDLLLLSAICGVVRWGLMGS--------TTALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALA 337 (382)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHh--------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHH
Confidence 99999988888877776655433 12333334444444444422223333666676 5556788888876 44
Q ss_pred HHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhHhHH
Q psy15226 241 LAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSV 276 (362)
Q Consensus 241 ~~ig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~ 276 (362)
..+|..++|.+.|.+.+..|+. .++..+++.+++.
T Consensus 338 ~~~g~~ig~~i~G~l~~~~g~~-~~~~~~~~~~~~~ 372 (382)
T PRK11128 338 MGGSIAIMTVLSGFLYQHLGAG-VFWVMALVALPAL 372 (382)
T ss_pred HHHHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHHH
Confidence 5677799999999999998874 5666565555443
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.7e-15 Score=139.73 Aligned_cols=162 Identities=14% Similarity=0.068 Sum_probs=124.5
Q ss_pred HHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcc
Q psy15226 117 TSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQ 196 (362)
Q Consensus 117 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (362)
..+...+|.+.++.|.+..+.+++.+...++.+++++++|+++||+|||+.++++.++.+++.++.++ ..+.
T Consensus 184 ~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~af--------a~s~ 255 (742)
T TIGR01299 184 FVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSF--------VQGY 255 (742)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH--------HhhH
Confidence 45666778888888998888889999999999999999999999999999999988888887777655 1233
Q ss_pred hHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh-------------chhH
Q psy15226 197 YIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSL-------------GQHV 263 (362)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~-------------g~~~ 263 (362)
+..++..++.+++..+..+...++++|.+|++.|+...++...+..+|.++++.+...+.... +|++
T Consensus 256 ~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~ 335 (742)
T TIGR01299 256 GFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRV 335 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHH
Confidence 344444455555444444666799999999999999999999999999999988776665433 5777
Q ss_pred HHHHHHHhhHhHHhhhheeeccCC
Q psy15226 264 IFFIYSSVHFCSVVFNYFYLMETK 287 (362)
Q Consensus 264 ~~~~~~~~~~i~~~~~~~~~~e~~ 287 (362)
.+++.++.+++. ++..+++||+.
T Consensus 336 l~~i~~lp~ll~-ll~~~~lPESP 358 (742)
T TIGR01299 336 FVIVCAFPCVFA-IGALTFMPESP 358 (742)
T ss_pred HHHHHHHHHHHH-HHHHHHcCCCH
Confidence 777666655554 44456789973
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.3e-15 Score=131.97 Aligned_cols=156 Identities=10% Similarity=0.025 Sum_probs=111.3
Q ss_pred hHHHHHHhHHHHhhh-cCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCC
Q psy15226 115 GITSMITYSSTLLPK-LDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELP 193 (362)
Q Consensus 115 ~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (362)
+.+....|.|.++++ .|++..+.+...+...++..++.++.|+++||++||+.+........+....+.. .+
T Consensus 220 ~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~-------~~ 292 (394)
T PRK03699 220 AQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVN-------TD 292 (394)
T ss_pred HHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHH-------cC
Confidence 345677889999965 4998888888888899999999999999999999999887766655554444322 12
Q ss_pred CcchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhH
Q psy15226 194 NFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHF 273 (362)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 273 (362)
+........+..+.+..+..+...++..|..|. .++...+.......+|+.++|.+.|.+.+..|++..+++.+++.+
T Consensus 293 -~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~ 370 (394)
T PRK03699 293 -DPSHLLYAILGLGFFSSAIYTTIITLGSQQTKV-ASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYA 370 (394)
T ss_pred -CchHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-CCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHH
Confidence 222222223333333233333333566676654 467778888888999999999999999999999988888777777
Q ss_pred hHHhhh
Q psy15226 274 CSVVFN 279 (362)
Q Consensus 274 i~~~~~ 279 (362)
++.+..
T Consensus 371 ~~~~~~ 376 (394)
T PRK03699 371 VVFVMC 376 (394)
T ss_pred HHHHHH
Confidence 665443
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.1e-15 Score=132.64 Aligned_cols=161 Identities=12% Similarity=0.084 Sum_probs=127.0
Q ss_pred HHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcch
Q psy15226 118 SMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQY 197 (362)
Q Consensus 118 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (362)
......|.+.++.|.++.+.++..+...++..++.++.|+++||+|||+.+..+..+.+++.+.... .++.+
T Consensus 38 ~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~--------~~~~~ 109 (394)
T PRK10213 38 LPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSF--------ANSFS 109 (394)
T ss_pred HHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHH--------HChHH
Confidence 4444678888888999888999999999999999999999999999999999999999888777655 12334
Q ss_pred HHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhHhHHh
Q psy15226 198 IPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSVV 277 (362)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~ 277 (362)
..++...+.+.+.....+...+++.|.+|+++|+.+.++......+|..++|.+.+.+.+..||++.|++.+++.++..+
T Consensus 110 ~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l 189 (394)
T PRK10213 110 LLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIF 189 (394)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Confidence 44444444444443334555588899999999999999999999999999999999999999999999888776665544
Q ss_pred hhheeeccC
Q psy15226 278 FNYFYLMET 286 (362)
Q Consensus 278 ~~~~~~~e~ 286 (362)
......||+
T Consensus 190 ~~~~~~p~~ 198 (394)
T PRK10213 190 WIIKSLPSL 198 (394)
T ss_pred HHHHHCCCC
Confidence 443345553
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.2e-15 Score=136.53 Aligned_cols=238 Identities=14% Similarity=0.094 Sum_probs=130.9
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHHhh-ccCCChHHHHhcCCHHHHHHHHHhHcCCcccHHHHHHHHHHHHhhcccc
Q psy15226 6 AILLIGNHVSYNSLNIALSILPVIFFILFS-FVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKS 84 (362)
Q Consensus 6 ~~~~l~~~~~Wr~~f~~~~~~~~~~~~~~~-~lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (362)
++..+....+||+.|++.+++.++..+..+ +.||+|+....+++ ++. ..++. +++ + +++.++.+..
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-------~~~~~--~~~--~-~~~~~~~~~~ 205 (379)
T TIGR00881 139 VLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDSPQSCGLPPA-EEM-------PNEEP--DGD--A-EKKEEELTKK 205 (379)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHHHheeeCCCccccccCcc-ccC-------ccccc--ccc--c-ccccccccch
Confidence 333444566999999999888777655444 47887742111000 000 00000 000 0 0000000111
Q ss_pred ccchhhhccCcchhHHHHHHHHHHHHHhhhhHHHHHHhHHHHhhh-cCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy15226 85 KTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPK-LDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILG 163 (362)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g 163 (362)
+...++.++++..+...+. .+...........+.|.++++ .|.+..+.+.......++..++.++.|+++||..
T Consensus 206 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~ 280 (379)
T TIGR00881 206 QIFLQYVLLNKVLWYISLG-----YVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLF 280 (379)
T ss_pred HHHHHHHHhcchHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHc
Confidence 1223455554332222111 111122235566777887765 4888788888889999999999999999999864
Q ss_pred CchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHH
Q psy15226 164 RKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAF 243 (362)
Q Consensus 164 rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~i 243 (362)
+|+...............+..... ................+....+..+..+.+..|..|++.|+++.|+.+....+
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~ 357 (379)
T TIGR00881 281 NGRRGPLAVFFMALIIVSLLVYWL---NPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYL 357 (379)
T ss_pred CCcchHHHHHHHHHHHHHHHHHhc---CcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhh
Confidence 333222222111111111111100 01111122222222222222333344447789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhchhHH
Q psy15226 244 GSFITTKFHILITKSLGQHVI 264 (362)
Q Consensus 244 g~~~~~~~~~~~~~~~g~~~~ 264 (362)
|+.++|.+.|.+.++.||+..
T Consensus 358 g~~~~~~~~g~l~~~~g~~~~ 378 (379)
T TIGR00881 358 GGILAGLPLGYLADGFGWAGA 378 (379)
T ss_pred hhhhhhhhHHHHHHhhccccc
Confidence 999999999999999998754
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.1e-15 Score=132.46 Aligned_cols=220 Identities=14% Similarity=0.038 Sum_probs=139.5
Q ss_pred chhhHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhc--cCCChHHHHhcCCHHHHHHHHHhHcCCcccHHHHHHHHHHHHh
Q psy15226 2 VGTLAILLIGNHVSYNSLNIALSILPVIFFILFSF--VPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQ 79 (362)
Q Consensus 2 ~G~~~~~~l~~~~~Wr~~f~~~~~~~~~~~~~~~~--lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ 79 (362)
+|++++..+.+..|||+.|++.++..++..+..+. .||+++ +++ ++ . .++..+
T Consensus 143 ~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~------------~-~~~~~~------- 197 (365)
T TIGR00900 143 VGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSVRIPELAA----SEI-QA------------L-SNAVLR------- 197 (365)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccCCC----ccc-cc------------c-chhHHH-------
Confidence 45666666667789999999988877666554443 344331 000 00 0 000000
Q ss_pred hccccccchhhhccCcchhHHHHHHHHHHHHHhhhhHHHHHHhHHHHhhh-cCCCCCchhHHHHHHHHHHHHHHHHHHHH
Q psy15226 80 EDLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPK-LDNAYFGPDQCILVFMIIMFLSNFLQAPL 158 (362)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l 158 (362)
+.+..+++.++++..+........... ........+.|.+.++ .|.+..+.+.......++..++.++.+++
T Consensus 198 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 270 (365)
T TIGR00900 198 ---DTREGIKFVLKNPLLRTLLLLALLFNL----VFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLL 270 (365)
T ss_pred ---HHHhHHHHHHcCcHHHHHHHHHHHHHH----HHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111234556665443322222221111 1112223667887776 58887788888888999999999999999
Q ss_pred hhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHH
Q psy15226 159 MDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCAS 238 (362)
Q Consensus 159 ~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~ 238 (362)
.||++||+.+..+....+++...... ..++.+...+...+.+.+.....+...+++.|..|++.|+++.|+.+
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 343 (365)
T TIGR00900 271 GRYFKRMALMTGAIFVIGLAILVVGL-------TPPNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQF 343 (365)
T ss_pred HHHhchhHHHHHHHHHHHHHHHHHHh-------hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99999999888776666666555443 11112333333444444433344555588999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q psy15226 239 VALAFGSFITTKFHILITKSLG 260 (362)
Q Consensus 239 ~~~~ig~~~~~~~~~~~~~~~g 260 (362)
....++..+++.+.|.+.++.|
T Consensus 344 ~~~~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 344 SLSHAAWPLGLILAGPLADHLG 365 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999988654
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.3e-15 Score=137.65 Aligned_cols=179 Identities=13% Similarity=0.006 Sum_probs=137.5
Q ss_pred HHHHHHHHHHHhhhhHHHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHH
Q psy15226 101 FTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTF 180 (362)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~ 180 (362)
.+.......+.............|.+.++.|.+..+.++..+.+.++...+.++.|+++||+|||+++..+..+..++.+
T Consensus 7 ~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~ 86 (495)
T PRK14995 7 TLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASL 86 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 33444444444444456777888999999999888899999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHHhhcccccchhhcccCC-CcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15226 181 STGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELF-PINVRCQASSCASVALAFGSFITTKFHILITKSL 259 (362)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~ 259 (362)
.++. .++.+..++...+.+.+.....+.....+.+.+ |+++|+++.|+......+|..++|.+++.+.++.
T Consensus 87 ~~~~--------a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~ 158 (495)
T PRK14995 87 AAAF--------SPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHF 158 (495)
T ss_pred HHHH--------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 8776 233444444444455444333333334455554 7789999999999999999999999999999999
Q ss_pred chhHHHHHHHHhhHhHHhhhheeeccCC
Q psy15226 260 GQHVIFFIYSSVHFCSVVFNYFYLMETK 287 (362)
Q Consensus 260 g~~~~~~~~~~~~~i~~~~~~~~~~e~~ 287 (362)
||++.|++...+.++..++..+..|+.+
T Consensus 159 gwr~~f~i~~~~~~~~~~l~~~~l~~~~ 186 (495)
T PRK14995 159 YWGSVFLINVPIVLVVMGLTARYVPRQA 186 (495)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 9999999887777776666656677653
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.4e-14 Score=131.09 Aligned_cols=175 Identities=15% Similarity=0.098 Sum_probs=130.7
Q ss_pred HHHHHHHHhhhhHHHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHH
Q psy15226 104 VMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTG 183 (362)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~ 183 (362)
...+................|.+.++.|.+..+.++..+...++..++.++.|+++||+|||+++..+.++.+++.+.+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~ 95 (405)
T TIGR00891 16 AAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACG 95 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 33333333334456677778888888899989999999999999999999999999999999999998888888877765
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc--h
Q psy15226 184 LFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLG--Q 261 (362)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g--~ 261 (362)
+ .++.+..+....+.+.+.....+...+++.|.+|+++|+++.++.+....+|..+++.+.+.+.+..+ |
T Consensus 96 ~--------~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w 167 (405)
T TIGR00891 96 F--------APGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGW 167 (405)
T ss_pred H--------hccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccH
Confidence 5 12333334444444444333344445889999999999999999999999999999999998888766 9
Q ss_pred hHHHHHHHHhhHhHHhhhheeeccCC
Q psy15226 262 HVIFFIYSSVHFCSVVFNYFYLMETK 287 (362)
Q Consensus 262 ~~~~~~~~~~~~i~~~~~~~~~~e~~ 287 (362)
++.+.+.++..++. ++.....||++
T Consensus 168 ~~~f~~~~~~~~~~-~~~~~~~~~~~ 192 (405)
T TIGR00891 168 RALFFISILPIIFA-LWLRKNIPEAE 192 (405)
T ss_pred HHHHHHHHHHHHHH-HHHHHhCCCCh
Confidence 98887765554444 33334567654
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.2e-14 Score=127.98 Aligned_cols=225 Identities=10% Similarity=0.115 Sum_probs=135.6
Q ss_pred chhhHHHHhhhhhhhHHHHHHHHHHHHHHHHHhh-ccCCChHHHHhcCCHHHHHHHHHhHcCCcccHHHHHHHHHHHHhh
Q psy15226 2 VGTLAILLIGNHVSYNSLNIALSILPVIFFILFS-FVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQE 80 (362)
Q Consensus 2 ~G~~~~~~l~~~~~Wr~~f~~~~~~~~~~~~~~~-~lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (362)
+|++++..+.+.+|||+.|++.++++++..+... .+||+|+. + +
T Consensus 159 ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~~~-----~-~----------------------------- 203 (394)
T PRK10213 159 IAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLPGE-----P-S----------------------------- 203 (394)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCCCcc-----c-c-----------------------------
Confidence 4677777777778999999998887776555443 37876520 0 0
Q ss_pred ccccccchhhhccCcchhHHHHHHHHHHHHHhhhhHHHHHHhH-HHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHh
Q psy15226 81 DLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYS-STLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLM 159 (362)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 159 (362)
+...+.++.+++|..+..... ..... .+......+. |.+.++.|++..+.+......+++..++.++.+++.
T Consensus 204 --~~~~~~~~~l~~~~~~~~~~~-~~~~~----~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~ 276 (394)
T PRK10213 204 --HQKQNTFRLLQRPGVMAGMIA-IFMSF----AGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFIL 276 (394)
T ss_pred --cchhHHHHHhcCHHHHHHHHH-HHHHH----HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000112345554333322211 11111 1223334444 667777799877788888889999999999999999
Q ss_pred hhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHH
Q psy15226 160 DILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASV 239 (362)
Q Consensus 160 dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~ 239 (362)
||.+++ .+..+..+.....+.+... .++.+.......+.+.++....+...+++.+..| +.++.+.+....
T Consensus 277 ~r~~~~-~l~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 347 (394)
T PRK10213 277 KRSVKL-ALAGAPLVLAVSALVLTLW-------GSDKIVATGVAIIWGLTFALVPVGWSTWITRSLA-DQAEKAGSIQVA 347 (394)
T ss_pred hccchh-HHHHHHHHHHHHHHHHHHH-------hhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCc-ccHHHHHHHHHH
Confidence 996444 3333333333332222210 1123333333444444443333333356777777 446677777778
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhHhHHh
Q psy15226 240 ALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSVV 277 (362)
Q Consensus 240 ~~~ig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~ 277 (362)
...+|..+++.+.|.+.+..|++..+...+.+.++..+
T Consensus 348 ~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~~~ 385 (394)
T PRK10213 348 VIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLTAL 385 (394)
T ss_pred HHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHH
Confidence 88999999999999999999988777776655544433
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.1e-15 Score=132.99 Aligned_cols=166 Identities=18% Similarity=0.186 Sum_probs=130.3
Q ss_pred hHHHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCC
Q psy15226 115 GITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPN 194 (362)
Q Consensus 115 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (362)
+........|.+.++.|.+..+.++..+...++..++.++.|+++||+|||+.+..+..+.+++.+.... .+
T Consensus 20 ~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~--------~~ 91 (385)
T TIGR00710 20 GIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLAL--------SN 91 (385)
T ss_pred HHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHH--------Hc
Confidence 3455556678888888999889999999999999999999999999999999999988888887777655 12
Q ss_pred cchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhHh
Q psy15226 195 FQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFC 274 (362)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i 274 (362)
+.+...+...+.+.+.....+...+++.|.+|+++|+++.++.+....+|..+++.+.+.+.++.+|+..+++.++..++
T Consensus 92 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~ 171 (385)
T TIGR00710 92 NIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGIL 171 (385)
T ss_pred cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 33333333334443333333444588999999999999999999999999999999999999989999999888887777
Q ss_pred HHhhhheeeccCCC
Q psy15226 275 SVVFNYFYLMETKQ 288 (362)
Q Consensus 275 ~~~~~~~~~~e~~~ 288 (362)
..+..++..||+++
T Consensus 172 ~~~~~~~~~~~~~~ 185 (385)
T TIGR00710 172 LSALIFFILPETLP 185 (385)
T ss_pred HHHHHHHhCCCCCC
Confidence 66666566677543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.64 E-value=3e-14 Score=128.67 Aligned_cols=160 Identities=14% Similarity=0.153 Sum_probs=111.1
Q ss_pred hHHHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhh-hhhHhHHHHHHHHHHHHHHhcCCC
Q psy15226 115 GITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSC-FSAALGCLLTFSTGLFYLYQGELP 193 (362)
Q Consensus 115 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 193 (362)
+.+....+.|.+.++.|.+..+.+.......++..++.+..|+++||+|||+.+. .+....+++...+..... ...
T Consensus 237 ~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~---~~~ 313 (402)
T TIGR00897 237 GLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQ---HFG 313 (402)
T ss_pred HHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHH---ccC
Confidence 3466677889999888998777778888888999999999999999999988653 223333333222211100 011
Q ss_pred CcchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhH
Q psy15226 194 NFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHF 273 (362)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 273 (362)
+..+.........+.+.....+.. ....|..| ++|+++.|+.+....+++.++|.+.+.+.+..|+...+++.+++.+
T Consensus 314 ~~~~~~~~~~~~~G~~~~~~~~~~-~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~ 391 (402)
T TIGR00897 314 HSFAVALIIAIALGIFLAGYVPLA-AVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYV 391 (402)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHH-HHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 222333333333443333333433 45667655 5899999999999999999999999999999999989988888777
Q ss_pred hHHhhh
Q psy15226 274 CSVVFN 279 (362)
Q Consensus 274 i~~~~~ 279 (362)
++.++.
T Consensus 392 i~~~~~ 397 (402)
T TIGR00897 392 VSAFLT 397 (402)
T ss_pred HHHHHH
Confidence 765554
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.2e-15 Score=136.46 Aligned_cols=164 Identities=11% Similarity=0.025 Sum_probs=128.6
Q ss_pred HHHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCc
Q psy15226 116 ITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNF 195 (362)
Q Consensus 116 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (362)
...+....|.+.++.|.+..+.++..+...++..++.++.|+++||+|||+.+..+..+.+++.+++.. ..+
T Consensus 11 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--------~~~ 82 (379)
T TIGR00881 11 RKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGF--------STS 82 (379)
T ss_pred HHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHH--------hhh
Confidence 355666778888888999889999999999999999999999999999999999999888888877765 123
Q ss_pred chHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHH-HHHHHHHHhhchhHHHHHHHHhhHh
Q psy15226 196 QYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITT-KFHILITKSLGQHVIFFIYSSVHFC 274 (362)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~i 274 (362)
.+..++...+.+.+.....+...+++.|.+|+++|+++.++.+....+|..+++ .+.+.+.+..+|+..+++.+++.++
T Consensus 83 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (379)
T TIGR00881 83 LWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAII 162 (379)
T ss_pred HHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence 333333344444333444455558999999999999999999999999999999 4666666778999999888877776
Q ss_pred HHhhhheeeccCC
Q psy15226 275 SVVFNYFYLMETK 287 (362)
Q Consensus 275 ~~~~~~~~~~e~~ 287 (362)
..++..++.||++
T Consensus 163 ~~~~~~~~~~~~~ 175 (379)
T TIGR00881 163 VSLICFLLLRDSP 175 (379)
T ss_pred HHHHHheeeCCCc
Confidence 6666666677654
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.5e-14 Score=128.53 Aligned_cols=234 Identities=11% Similarity=-0.036 Sum_probs=137.9
Q ss_pred chhhHHHHhhhhhhhHHHHHHHHHHHHHHHHHhh-ccCCChHHHHhcCCHHHHHHHHHhHcCCcccHHHHHHHHHHHHhh
Q psy15226 2 VGTLAILLIGNHVSYNSLNIALSILPVIFFILFS-FVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQE 80 (362)
Q Consensus 2 ~G~~~~~~l~~~~~Wr~~f~~~~~~~~~~~~~~~-~lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (362)
+|++++..+.+..+||+.|++.++..++..+..+ .+||+++. +++ + . ..+
T Consensus 152 ~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~------------~-~~~----------- 202 (406)
T PRK15402 152 LGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAGR---VGE--K------------L-SLK----------- 202 (406)
T ss_pred HHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCcc---ccc--c------------c-cHH-----------
Confidence 3555555566667999999998888887666443 47887531 000 0 0 000
Q ss_pred ccccccchhhhccCcchhHHHHHHHHHHHHHhhhhHHHHHHhHHHHhhh-cCCCCCchhHHHHHHHHHHHHHHHHHHHHh
Q psy15226 81 DLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPK-LDNAYFGPDQCILVFMIIMFLSNFLQAPLM 159 (362)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 159 (362)
+...++++.++++..+...+... ... ........+.|.++.+ .|.+..+.+.......++..++.++.++++
T Consensus 203 --~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~ 275 (406)
T PRK15402 203 --ELGRDYKLVLKNRRFVAGALALG----LVS-LPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLT 275 (406)
T ss_pred --HHHHHHHHHHcCcHHHHHHHHHH----HHH-HHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01123455666544332222111 111 1123344556766544 588866667766777778899999999999
Q ss_pred hhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHH
Q psy15226 160 DILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASV 239 (362)
Q Consensus 160 dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~ 239 (362)
||+++|+.+..+....+++...+...... .............+.+.+.....+........ .++++||+..+..+.
T Consensus 276 ~r~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~ 351 (406)
T PRK15402 276 SRRPLRSLIRMGLWPMVAGLLLAALATVI---SSHAYLWLTAGLSLYAFGIGLANAGLYRLTLF-SSDVSKGTVSAAMGM 351 (406)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHHHHHc---ccccHHHHHHHHHHHHHHHHHHhhhHHHHHhh-hccccccHHHHHHHH
Confidence 99999999888877776666655442111 11122223333344444432222222233333 344789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhHhH
Q psy15226 240 ALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCS 275 (362)
Q Consensus 240 ~~~ig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~ 275 (362)
...++..+++.+.+.+.+..++....+...+..++.
T Consensus 352 ~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~ 387 (406)
T PRK15402 352 LSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLW 387 (406)
T ss_pred HHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHH
Confidence 999999999999999888777664444433333333
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.2e-15 Score=132.37 Aligned_cols=178 Identities=15% Similarity=0.132 Sum_probs=134.4
Q ss_pred HHHHHHHHHHhhhhHHHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHH
Q psy15226 102 TLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFS 181 (362)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~ 181 (362)
+.+........-.+........|.+.++.|.+..+.++..+...++..++.++.|+++||+|||+.+..+.....++...
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~ 84 (392)
T PRK10473 5 LLCSFALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLL 84 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHH
Confidence 33444444444445566677889999999999888888999999999999999999999999999999988888887776
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhch
Q psy15226 182 TGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQ 261 (362)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g~ 261 (362)
+.. .++.........+.+.+.....+..++++.|.+|+++|+++.++.+....++..++|.+.+.+.+..+|
T Consensus 85 ~~~--------~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~ 156 (392)
T PRK10473 85 CSL--------AETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPW 156 (392)
T ss_pred HHH--------hCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCh
Confidence 654 122233333333333333333344558899999999999999999999999999999999888888899
Q ss_pred hHHHHHHHHhhHhHHhhhheeeccCC
Q psy15226 262 HVIFFIYSSVHFCSVVFNYFYLMETK 287 (362)
Q Consensus 262 ~~~~~~~~~~~~i~~~~~~~~~~e~~ 287 (362)
+..+++.+++.++..++.....||++
T Consensus 157 ~~~~~~~~~~~~i~~~~~~~~~~~~~ 182 (392)
T PRK10473 157 QSLFYTMAAMGILVLLLSLFILKETR 182 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 99998888877777666556667654
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.9e-15 Score=138.88 Aligned_cols=166 Identities=16% Similarity=0.089 Sum_probs=133.3
Q ss_pred hhHHHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCC
Q psy15226 114 GGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELP 193 (362)
Q Consensus 114 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (362)
..........|.+.++.|.+..+.++..+...++..++.++.|+++||+|||+.+..+..+..++.+.+.. .
T Consensus 16 ~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--------~ 87 (485)
T TIGR00711 16 LDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGV--------A 87 (485)
T ss_pred HHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhC--------c
Confidence 34466777889999999999888999999999999999999999999999999999999988888877654 2
Q ss_pred CcchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhH
Q psy15226 194 NFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHF 273 (362)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 273 (362)
++....++...+.+.+.....+...+++.|.+|+++|+++.++......+|..++|.+.+.+.++.||++.|++.+.+.+
T Consensus 88 ~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~ 167 (485)
T TIGR00711 88 PNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGI 167 (485)
T ss_pred CCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHH
Confidence 23333344444444433344455568899999999999999999999999999999999999999999999988877776
Q ss_pred hHHhhhheeeccCC
Q psy15226 274 CSVVFNYFYLMETK 287 (362)
Q Consensus 274 i~~~~~~~~~~e~~ 287 (362)
+..++..+..||++
T Consensus 168 ~~~~~~~~~~~~~~ 181 (485)
T TIGR00711 168 IVVVVAFFILPRDK 181 (485)
T ss_pred HHHHHHHHHcCCcc
Confidence 66665555666644
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.5e-14 Score=129.32 Aligned_cols=139 Identities=14% Similarity=0.125 Sum_probs=99.6
Q ss_pred HHHHHhHHHHhhh-cCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCc
Q psy15226 117 TSMITYSSTLLPK-LDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNF 195 (362)
Q Consensus 117 ~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (362)
.....+.|.+++. .|.++.+.++......++..++.++.++++||+|||+++..+....++....+... .....
T Consensus 278 ~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 352 (471)
T PRK10504 278 GMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLV-----ALLGW 352 (471)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhc-----ccccc
Confidence 4455667777775 58887777888888888888888999999999999999988888777766554431 01111
Q ss_pred chHHHHHHHHHHHHh-hcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhch
Q psy15226 196 QYIPYITTLLYAASY-YGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQ 261 (362)
Q Consensus 196 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g~ 261 (362)
...........+.+. ....+. ..+..+..|++.|+.+.++.++...+|..+++.+.+.+.+..|+
T Consensus 353 ~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g~ 418 (471)
T PRK10504 353 YYLLPFVLFLQGMVNSTRFSSM-NTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFGQ 418 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 111122222333333 333333 37778889999999999999999999999999999998877665
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.4e-14 Score=124.43 Aligned_cols=156 Identities=19% Similarity=0.144 Sum_probs=126.1
Q ss_pred HHHHHHhHHHHhhhc-CCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCch-hhhhhhHhHHHHHHHHHHHHHHhcCCC
Q psy15226 116 ITSMITYSSTLLPKL-DNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKP-LSCFSAALGCLLTFSTGLFYLYQGELP 193 (362)
Q Consensus 116 ~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (362)
......+.|.+.++. |.+..+.+.......++..++.++.+++.||+|||+ .+..+..+..++.+.... .
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--------~ 262 (352)
T cd06174 191 YYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLAL--------A 262 (352)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH--------h
Confidence 466677888888776 888788889999999999999999999999999999 888888888887776655 1
Q ss_pred CcchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhH
Q psy15226 194 NFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHF 273 (362)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 273 (362)
++.+.......+.+.+.....+....+..|..|+++|++..++.+....++..+++.+.+.+.+..+++..+.+.+++.+
T Consensus 263 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~ 342 (352)
T cd06174 263 PSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALAL 342 (352)
T ss_pred ccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHH
Confidence 12333334344444444444566668999999999999999999999999999999999999988999999998888888
Q ss_pred hHHhhh
Q psy15226 274 CSVVFN 279 (362)
Q Consensus 274 i~~~~~ 279 (362)
++.+..
T Consensus 343 i~~i~~ 348 (352)
T cd06174 343 LAALLL 348 (352)
T ss_pred HHHHHh
Confidence 776554
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.4e-14 Score=131.18 Aligned_cols=164 Identities=18% Similarity=0.111 Sum_probs=127.7
Q ss_pred HHHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCc
Q psy15226 116 ITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNF 195 (362)
Q Consensus 116 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (362)
........|.+.++.|.++.+.++..+...++..++.++.|+++||+|||+++..+..+..++.+.+.. ..+
T Consensus 31 ~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--------~~~ 102 (406)
T PRK11551 31 LQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQ--------AWD 102 (406)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHH--------hcc
Confidence 455667778888889999889999999999999999999999999999999999988887777666554 123
Q ss_pred chHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhHhH
Q psy15226 196 QYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCS 275 (362)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~ 275 (362)
.+..++...+.+.+.....+...+++.|.+|+++|+++.++.+....+|..+++.+.+.+.+..+|+..+++.+++.++.
T Consensus 103 ~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (406)
T PRK11551 103 FPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLL 182 (406)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHH
Confidence 33334444444444333334445889999999999999999999999999999999888888889999888877766665
Q ss_pred HhhhheeeccCC
Q psy15226 276 VVFNYFYLMETK 287 (362)
Q Consensus 276 ~~~~~~~~~e~~ 287 (362)
.++...+.||+.
T Consensus 183 ~~~~~~~l~~~~ 194 (406)
T PRK11551 183 VPLLMRWLPESR 194 (406)
T ss_pred HHHHHHhCCCCh
Confidence 555555567653
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.8e-15 Score=136.53 Aligned_cols=164 Identities=10% Similarity=-0.016 Sum_probs=115.9
Q ss_pred HHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcchH
Q psy15226 119 MITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYI 198 (362)
Q Consensus 119 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (362)
+....|.+.++ |.+..+.++..+...++..+++++.|+++||+|||+++..+.++.+++.+.+.+... ...+...
T Consensus 48 ~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~----~~~~~~~ 122 (452)
T PRK11273 48 FALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPW----ATSSIAV 122 (452)
T ss_pred HHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhc----ccccHHH
Confidence 45567777666 999889999999999999999999999999999999999999888888777655110 0112222
Q ss_pred HHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHH-HHHHHHHHHHhhchhHHHHHHHHhhHhHHh
Q psy15226 199 PYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFI-TTKFHILITKSLGQHVIFFIYSSVHFCSVV 277 (362)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~ 277 (362)
.+....+.+.+.....+.....+.|.+|+++|++++++.+....+|+.+ ++.+...+....||++.|++.+++.++..+
T Consensus 123 ~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~ 202 (452)
T PRK11273 123 MFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVAL 202 (452)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 2333333333332222333367889999999999999998888888654 444433333345899999888877777656
Q ss_pred hhheeeccCC
Q psy15226 278 FNYFYLMETK 287 (362)
Q Consensus 278 ~~~~~~~e~~ 287 (362)
+..+++||+.
T Consensus 203 l~~~~~~~~~ 212 (452)
T PRK11273 203 FAFAMMRDTP 212 (452)
T ss_pred HHHHHccCCH
Confidence 6656667653
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.9e-14 Score=130.20 Aligned_cols=164 Identities=14% Similarity=0.095 Sum_probs=127.3
Q ss_pred HHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcc
Q psy15226 117 TSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQ 196 (362)
Q Consensus 117 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (362)
.....-+|.+.++.+.+..+..+..+++.++..++.+++|+++||+|||+++..+..+.+++.+.+.. .++.
T Consensus 33 ~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~--------a~~~ 104 (413)
T PRK15403 33 DLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLF--------TTSM 104 (413)
T ss_pred HhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHH--------cCCH
Confidence 34444556666778888888889999999999999999999999999999999998888888877665 2233
Q ss_pred hHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhHhHH
Q psy15226 197 YIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSV 276 (362)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~ 276 (362)
...++...+.+.+.....+..+.++.|.+|+++|++++++.+....++..++|.+++.+.++.||++.|++.++..++..
T Consensus 105 ~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~ 184 (413)
T PRK15403 105 TQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAF 184 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 33344444444433222344457788999999999999999999999999999999999888899999999888877776
Q ss_pred hhhheeeccCCC
Q psy15226 277 VFNYFYLMETKQ 288 (362)
Q Consensus 277 ~~~~~~~~e~~~ 288 (362)
+..++..||+++
T Consensus 185 ~~~~~~lp~~~~ 196 (413)
T PRK15403 185 VGLLLAMPETVK 196 (413)
T ss_pred HHHHHhCCCCcc
Confidence 655556787643
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.4e-14 Score=129.19 Aligned_cols=206 Identities=13% Similarity=0.024 Sum_probs=125.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhh-ccCCChHHHHhcCCHHHHHHHHHhHcCCcccHHHHHHHHHHHHhhccccccchhhh
Q psy15226 13 HVSYNSLNIALSILPVIFFILFS-FVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGYLEL 91 (362)
Q Consensus 13 ~~~Wr~~f~~~~~~~~~~~~~~~-~lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (362)
..+||+.+.+.++++++..+..+ .+||+++ +.+ ++. + ++.+.+..++++
T Consensus 169 ~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~----~~~-~~~-----------~--------------~~~~~~~~~~~l 218 (437)
T TIGR00792 169 KFGWFMFALVLALIGVVSLIICFFGTKERYS----EIP-KNI-----------E--------------KKLSLKQIFKAL 218 (437)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHcCCEecCC----CCC-ccc-----------c--------------cCCCHHHHHHHH
Confidence 35899999999998888766544 4787652 000 000 0 000111234556
Q ss_pred ccCcchhHHHHHHHHHHHHHhhhhHHHHHHhHHHHhhhc-CCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhh
Q psy15226 92 LTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKL-DNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCF 170 (362)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~ 170 (362)
+++|..+......++... +......+.+.+.+.. + +....+....+..++.+++.+++++++||+|+|+.+..
T Consensus 219 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~ 292 (437)
T TIGR00792 219 FKNDQLLILCLAYLFYNL-----AFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAG 292 (437)
T ss_pred hCCHHHHHHHHHHHHHHH-----HHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 665443332222221111 1233333444444433 3 33445566677788999999999999999999999988
Q ss_pred hhHhHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhcccccchhhcccCCC-------cchhhhhhHHHHHHHHH
Q psy15226 171 SAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFP-------INVRCQASSCASVALAF 243 (362)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-------~~~r~~~~~~~~~~~~i 243 (362)
+..+.+++.+.+.+ ..++.+...+...+.+.+.....+..+++++|..| ++.+|.+.|+.+.+..+
T Consensus 293 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~ 365 (437)
T TIGR00792 293 GILLMVLGYLIFFF-------AGSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKL 365 (437)
T ss_pred HHHHHHHHHHHHHH-------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHH
Confidence 88777776655443 11222233333333333333334555678888764 55679999999999999
Q ss_pred HHHHHHHHHHHHHHhhch
Q psy15226 244 GSFITTKFHILITKSLGQ 261 (362)
Q Consensus 244 g~~~~~~~~~~~~~~~g~ 261 (362)
|..+++.+.|.+.+..|+
T Consensus 366 g~~lg~~i~g~ll~~~G~ 383 (437)
T TIGR00792 366 GQALAGFLVGLILGIIGY 383 (437)
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 999999999999887665
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.4e-14 Score=128.39 Aligned_cols=163 Identities=10% Similarity=0.095 Sum_probs=129.0
Q ss_pred HHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcc
Q psy15226 117 TSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQ 196 (362)
Q Consensus 117 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (362)
......+|.+.++.|.+..+.++..+...++..++.++.|+++||+|||+++..+..+.+++.+.... .++.
T Consensus 20 ~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~--------~~~~ 91 (382)
T PRK10091 20 FGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTL--------SSSY 91 (382)
T ss_pred HHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHH--------hCcH
Confidence 45566778888889999888999999999999999999999999999999999999998888877765 2233
Q ss_pred hHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhHhHH
Q psy15226 197 YIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSV 276 (362)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~ 276 (362)
+..++...+.+.+.....+.....+.|.+|+++|+++++.......++..+++.+.+.+.+..||++.|.+.++..++..
T Consensus 92 ~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~ 171 (382)
T PRK10091 92 LMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVL 171 (382)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHH
Confidence 44444444444433222334446788999999999999999999999999999999999888999999999888776665
Q ss_pred hhhheeeccCC
Q psy15226 277 VFNYFYLMETK 287 (362)
Q Consensus 277 ~~~~~~~~e~~ 287 (362)
+..+...||.+
T Consensus 172 ~~~~~~lp~~~ 182 (382)
T PRK10091 172 ASIYFWVPDIR 182 (382)
T ss_pred HHHHHhCCCCC
Confidence 55555677653
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.3e-14 Score=131.27 Aligned_cols=165 Identities=13% Similarity=0.081 Sum_probs=129.1
Q ss_pred hhHHHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCC
Q psy15226 114 GGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELP 193 (362)
Q Consensus 114 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (362)
........+.|.+.++.|.+..+.++..+...++..++.+++|+++||+|||++++.+..+.+++.+.+.. .
T Consensus 24 ~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~--------~ 95 (471)
T PRK10504 24 LDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCAL--------S 95 (471)
T ss_pred HhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH--------h
Confidence 34466777899999999999888888888889999999999999999999999999888877777766544 1
Q ss_pred CcchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhH
Q psy15226 194 NFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHF 273 (362)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 273 (362)
.+.+..++...+.+.+.....+...+++.|.+|+++|+++.++.+....+|..++|.+.+.+.++.||++.|.+......
T Consensus 96 ~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~ 175 (471)
T PRK10504 96 GTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGI 175 (471)
T ss_pred CCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHH
Confidence 23333344444444444334455567889999999999999999999999999999999999999999999988777666
Q ss_pred hHHhhhheeeccC
Q psy15226 274 CSVVFNYFYLMET 286 (362)
Q Consensus 274 i~~~~~~~~~~e~ 286 (362)
+..+......|+.
T Consensus 176 l~~~~~~~~~~~~ 188 (471)
T PRK10504 176 IGAIATLMLMPNY 188 (471)
T ss_pred HHHHHHHHhCCCc
Confidence 6655554455543
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.7e-13 Score=127.07 Aligned_cols=244 Identities=13% Similarity=0.074 Sum_probs=145.1
Q ss_pred chhhHHHHhhhhhhhHHHHHHHHHHHHHHHHHh-hccCCChHHHHhcCCHHHHHHH------------HHhHcCCcccHH
Q psy15226 2 VGTLAILLIGNHVSYNSLNIALSILPVIFFILF-SFVPETPHFHAAKNNLKKTEKS------------LKWYRGNKKDVM 68 (362)
Q Consensus 2 ~G~~~~~~l~~~~~Wr~~f~~~~~~~~~~~~~~-~~lpesp~~l~~~~~~~~a~~~------------l~~~~~~~~~~~ 68 (362)
+|+++++.+.+..||||.|++...+.++..++. +++||+|+. ++++.|..... ++..........
T Consensus 146 ~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~--~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~ 223 (495)
T PRK14995 146 FGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGR--RDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLW 223 (495)
T ss_pred HHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCC--CCCCCChHhHHHHHHHHHHHHHHHHhccccCCchH
Confidence 577777777788899999999988777765544 447887631 11112211110 000000000000
Q ss_pred HHHH-------HHHHHHhhccccccc--hhhhccCcchhHHHHHHHHHHHHHhhhhHHHHHHhHHHHhhhc-CCCCCchh
Q psy15226 69 EEMN-------SIMDKTQEDLKSKTG--YLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKL-DNAYFGPD 138 (362)
Q Consensus 69 ~~~~-------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~ 138 (362)
.... ....-...+...+.+ -.+++|++......+..+ ...........+.|.+++.. |.++.+++
T Consensus 224 ~~~~~~~~~~~~l~~f~~~e~~~~~p~~~~~lf~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~lq~v~g~s~~~ag 298 (495)
T PRK14995 224 VTSLTLLTGALLLGLFIRTQLAASRPMIDMRLFTHRIILSGVVMAM-----TAMITLVGFELLMAQELQFVHGLSPLEAG 298 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCcCHHHhCCcccHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 0000 000000000011111 134666543322222111 12222355567788888764 99989999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHh-hcccccc
Q psy15226 139 QCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASY-YGIGCLP 217 (362)
Q Consensus 139 ~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 217 (362)
.......++..+++++.|++.||+|+|+.+..+..+.+++...+... ....+.+.......+.+.+. ....+.
T Consensus 299 ~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~l~G~g~g~~~~~~- 372 (495)
T PRK14995 299 MFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMT-----DFSTQQWQAWGLMALLGFSAASALLAS- 372 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHh-----cCCCchHHHHHHHHHHHHhHHHHHHHH-
Confidence 99999999999999999999999999998888877776666554331 11122233333344444444 333333
Q ss_pred hhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15226 218 NILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKS 258 (362)
Q Consensus 218 ~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~ 258 (362)
...+.+..|+++++.+.++.++...+|+.+++.+.+.+.++
T Consensus 373 ~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~~ 413 (495)
T PRK14995 373 TSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLSR 413 (495)
T ss_pred HHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677889999999999999999999999999999888764
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.60 E-value=6e-14 Score=126.75 Aligned_cols=228 Identities=8% Similarity=0.017 Sum_probs=129.7
Q ss_pred hhhh-hhhHHHHHHHHHHHHHHHHHhhccCCChHHHHhcCCHHHHHHHHHhHcCCcccHHHHHHHHHHHHhhccccccch
Q psy15226 10 IGNH-VSYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGY 88 (362)
Q Consensus 10 l~~~-~~Wr~~f~~~~~~~~~~~~~~~~lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (362)
+.+. .|||..|++.++..++..+..+++||+++. +++.++ ..+ +.+.++
T Consensus 153 l~~~~~gw~~~f~i~a~~~l~~~l~~~~~~e~~~~---~~~~~~--------------~~~-------------~~~~~~ 202 (402)
T PRK11902 153 LADRVLGWGNTYLLMAGLMLAGALTTLWAPEPEVP---ARPPRS--------------LGE-------------AVVGPL 202 (402)
T ss_pred HHhcccCHHHHHHHHHHHHHHHHHHHHhcCCCccc---ccccch--------------hHH-------------HHHHHH
Confidence 4443 599999999998877766655667887531 100000 000 011235
Q ss_pred hhhccCcchhHHHHHHHHHHHHHhhhhHHHHHHhHHHHhhhcCCCCCchhHHHHHHH-HHHHHHHHHHHHHhhhcCCchh
Q psy15226 89 LELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFM-IIMFLSNFLQAPLMDILGRKPL 167 (362)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~g~l~dr~grr~~ 167 (362)
++++++|..+.............. .......+.+.++.|.++.+.++.....+ ++.+++.+++|++.||+|+|+.
T Consensus 203 ~~l~~~~~~~~~l~~~~l~~~~~~----~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~ 278 (402)
T PRK11902 203 RDFFSRRGAWALLLLIVLYKLGDA----FAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRS 278 (402)
T ss_pred HHHHhCcCHHHHHHHHHHHHhHHH----HHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 667776544433332222222111 11122233444556888666777665544 4688999999999999999998
Q ss_pred hhhhhHhHHHHHHHHHHHHHHhcCCCCcchHHHHHHH----HHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHH
Q psy15226 168 SCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTL----LYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAF 243 (362)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~i 243 (362)
+..+.....+..+.+..... ..++.+....... ..+.......+....++.+.+|.+.+ ++.+....+
T Consensus 279 l~~~~~~~~l~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l 350 (402)
T PRK11902 279 LMLFGVLQAVSNLGYWVLAV----TPKHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQY----ALLSALASV 350 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHh----cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHH----HHHHHHHHH
Confidence 77666655554433321111 1122222222221 11122223334444677777776544 445555567
Q ss_pred HHHHHHHHHHHHHHhhchhHHHHHHHHhhHhHHhhh
Q psy15226 244 GSFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFN 279 (362)
Q Consensus 244 g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~ 279 (362)
+...++.+.|.+.+..||+..|.+.+.+++++.++.
T Consensus 351 ~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~ 386 (402)
T PRK11902 351 GRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALL 386 (402)
T ss_pred HHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 777667789999999999988888887777765554
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.3e-14 Score=128.99 Aligned_cols=163 Identities=10% Similarity=0.070 Sum_probs=122.2
Q ss_pred hHHHHHHhHHHHhh-hcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCC
Q psy15226 115 GITSMITYSSTLLP-KLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELP 193 (362)
Q Consensus 115 ~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (362)
+......++|.+++ +.|.+..+.++..+...++..+++++.|+++||+|||+++..+....+++.+.+.+ .
T Consensus 22 g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~--------~ 93 (395)
T PRK10054 22 GRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPL--------V 93 (395)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHH--------H
Confidence 44566667777765 46999889999999999999999999999999999999998888877777666544 1
Q ss_pred CcchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhH
Q psy15226 194 NFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHF 273 (362)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 273 (362)
++.+..+......+.+.....+....+..|..|+++|+++.++.+...++|..++|.+.+.+.+ .+|+.+|.+.+++.+
T Consensus 94 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~ 172 (395)
T PRK10054 94 NNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSA 172 (395)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHH
Confidence 1222222222232222233344455888999999999999999999999999999999998875 789999988877777
Q ss_pred hHHhhhheeeccC
Q psy15226 274 CSVVFNYFYLMET 286 (362)
Q Consensus 274 i~~~~~~~~~~e~ 286 (362)
+..+...+..||+
T Consensus 173 i~~i~~~~~~~~~ 185 (395)
T PRK10054 173 FPLVFIQIWVQRS 185 (395)
T ss_pred HHHHHHHHHHhcc
Confidence 6655554445554
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.2e-14 Score=127.37 Aligned_cols=162 Identities=12% Similarity=-0.062 Sum_probs=122.4
Q ss_pred HHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcc
Q psy15226 117 TSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQ 196 (362)
Q Consensus 117 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (362)
..+....|.+.+++|.+..+.++..+.+.++..++.+..|+++||+|||+++.........+.. ... ...+.
T Consensus 8 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~-~~~-------~~~~~ 79 (368)
T TIGR00903 8 VTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAG-RLL-------DPFNY 79 (368)
T ss_pred HHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH-HHH-------HhccH
Confidence 4566778888999999988889999999999999999999999999999876654444333322 111 11233
Q ss_pred hHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhHhHH
Q psy15226 197 YIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSV 276 (362)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~ 276 (362)
...++...+.+.+... ........+|.+|+++|++++++.+....+|..+++.+.+.+.++.|||..|.+.+++.++..
T Consensus 80 ~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~ 158 (368)
T TIGR00903 80 EWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGI 158 (368)
T ss_pred HHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH
Confidence 3344444444444322 233335668999999999999999999999999999999999999999999999888877776
Q ss_pred hhhheeeccCC
Q psy15226 277 VFNYFYLMETK 287 (362)
Q Consensus 277 ~~~~~~~~e~~ 287 (362)
++.++.+||++
T Consensus 159 ~~~~~~lp~~p 169 (368)
T TIGR00903 159 ILVLAALPALP 169 (368)
T ss_pred HHHHHHcCCCC
Confidence 76667788754
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.3e-14 Score=128.32 Aligned_cols=160 Identities=13% Similarity=0.052 Sum_probs=116.4
Q ss_pred hhHHHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCC
Q psy15226 114 GGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELP 193 (362)
Q Consensus 114 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (362)
...+....+.|.+.++.|.+..+.++..+...++..++.++.|+++||+|||+++..+.+..+++.++.++ .
T Consensus 50 ~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~--------~ 121 (476)
T PLN00028 50 VSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSL--------V 121 (476)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH--------h
Confidence 33456667778888889999888888888888999999999999999999999998888887777766555 1
Q ss_pred CcchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHH---------hhchhHH
Q psy15226 194 NFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITK---------SLGQHVI 264 (362)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~---------~~g~~~~ 264 (362)
.+....++..++.+.+.....+. ..+++|.+|+++|+.+.|+.+...++|+.+++.+.+.+.. ..|||+.
T Consensus 122 ~s~~~l~~~r~l~G~~~~~~~~~-~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~ 200 (476)
T PLN00028 122 SSATGFIAVRFFIGFSLATFVSC-QYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIA 200 (476)
T ss_pred cCHHHHHHHHHHHHHHHHhhHHH-HHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHH
Confidence 22233333333333333323333 3578999999999999999988888888777766654432 1489999
Q ss_pred HHHHHHhhHhHHhhhhee
Q psy15226 265 FFIYSSVHFCSVVFNYFY 282 (362)
Q Consensus 265 ~~~~~~~~~i~~~~~~~~ 282 (362)
|++.+++.++..++.+++
T Consensus 201 f~i~g~l~l~~~l~~~~~ 218 (476)
T PLN00028 201 FFVPGLLHIIMGILVLTL 218 (476)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999888877665555443
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.2e-14 Score=126.83 Aligned_cols=174 Identities=16% Similarity=0.108 Sum_probs=126.1
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHHhHHHHhhh-cCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhc-CCchhhhhhhHhH
Q psy15226 98 RRAFTLVMAASLFQRLGGITSMITYSSTLLPK-LDNAYFGPDQCILVFMIIMFLSNFLQAPLMDIL-GRKPLSCFSAALG 175 (362)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~~~~~ 175 (362)
++.+...+.......+ .++.+..++|.++.+ .|++..+++...........++.+++|+++||+ |||+.+.++.++.
T Consensus 8 p~~l~~l~~~~~~e~f-s~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~ 86 (493)
T PRK15462 8 PRAIYYVVALQIWEYF-SFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLM 86 (493)
T ss_pred ChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHH
Confidence 3444444444444443 457788888988766 499988888888888899999999999999999 9999999999988
Q ss_pred HHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhcccccchhhcccCCCcc--hhhhhhHHHHHHHHHHHHHHHHHHH
Q psy15226 176 CLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPIN--VRCQASSCASVALAFGSFITTKFHI 253 (362)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~--~r~~~~~~~~~~~~ig~~~~~~~~~ 253 (362)
+++.+.+.. .............+...+.+...+...++++|.+|++ .|+++.++.+...++|+.++|.+.+
T Consensus 87 ~lg~lll~~-------~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g 159 (493)
T PRK15462 87 AIGHVVLGA-------SEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACG 159 (493)
T ss_pred HHHHHHHHH-------hhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHH
Confidence 888765543 1111122222222222222223343447899999976 6999999999999999999999999
Q ss_pred HHHHhhchhHHHHHHHHhhHhHHhhh
Q psy15226 254 LITKSLGQHVIFFIYSSVHFCSVVFN 279 (362)
Q Consensus 254 ~~~~~~g~~~~~~~~~~~~~i~~~~~ 279 (362)
.+.++.||+..|.+.++..+++.+..
T Consensus 160 ~L~~~~Gw~~~F~iaaigm~l~li~~ 185 (493)
T PRK15462 160 YAQEEYSWAMGFGLAAVGMIAGLVIF 185 (493)
T ss_pred HHHhhhChHHHHHHHHHHHHHHHHHH
Confidence 99999999999988766555554443
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.4e-13 Score=124.80 Aligned_cols=163 Identities=19% Similarity=0.170 Sum_probs=122.5
Q ss_pred hHHHHHHhHHHHhhhcCCCCCch-----hHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHh
Q psy15226 115 GITSMITYSSTLLPKLDNAYFGP-----DQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQ 189 (362)
Q Consensus 115 ~~~~~~~~~~~~~~~~g~~~~~~-----~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~ 189 (362)
+......++|.+.++.|.+..+. +...++..+...++.++.|+++||+|||+.+..+....+++.+.+..
T Consensus 29 ~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~----- 103 (408)
T PRK09874 29 AFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGL----- 103 (408)
T ss_pred HHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHH-----
Confidence 34556678898888888875543 56777888899999999999999999999999888887777766544
Q ss_pred cCCCCcchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHH
Q psy15226 190 GELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYS 269 (362)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~~~~ 269 (362)
.++.+..++...+.+.+ .+..+....++.|.+|+++|+.+.++.+....+|..+++.+.+.+.+..+|+..+++.+
T Consensus 104 ---~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~ 179 (408)
T PRK09874 104 ---AQNIWQFLILRALLGLL-GGFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITA 179 (408)
T ss_pred ---HhhHHHHHHHHHHHHHh-hhhHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 11233333333333332 22334444678889999999999999999999999999999999999899999998888
Q ss_pred HhhHhHHhhhheeeccC
Q psy15226 270 SVHFCSVVFNYFYLMET 286 (362)
Q Consensus 270 ~~~~i~~~~~~~~~~e~ 286 (362)
++.++..+...++.||+
T Consensus 180 ~~~~~~~~~~~~~~~~~ 196 (408)
T PRK09874 180 SVLFLCFLVTLFCIREN 196 (408)
T ss_pred HHHHHHHHHHHHHhccC
Confidence 87777666655556654
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.2e-14 Score=130.50 Aligned_cols=140 Identities=11% Similarity=0.042 Sum_probs=102.6
Q ss_pred HHHHHHhHHHHhhhc-CCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCC
Q psy15226 116 ITSMITYSSTLLPKL-DNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPN 194 (362)
Q Consensus 116 ~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (362)
++....+.|.++++. |.++.+.+.......++..++.+++|++.||+|||+.+..+..+.+++...+... . ....
T Consensus 271 ~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~--~--~~~~ 346 (485)
T TIGR00711 271 LYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFT--F--TPDT 346 (485)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhcc--C--CCCC
Confidence 355567788888764 8888888899999999999999999999999999999888887777776655420 0 1112
Q ss_pred cchHHHHHHHHHHHHh-hcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy15226 195 FQYIPYITTLLYAASY-YGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLG 260 (362)
Q Consensus 195 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g 260 (362)
+.........+.+.+. ....+.. ....+..|+++|+++.++.+....+|+.+++.+.+.+.++..
T Consensus 347 ~~~~~~~~~~l~g~g~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~~~ 412 (485)
T TIGR00711 347 PFLAIALPQFIRGFGMGCFFMPLT-TIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTNRT 412 (485)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222333333344443 3333443 556677899999999999999999999999999998877543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=6e-14 Score=127.01 Aligned_cols=163 Identities=12% Similarity=0.094 Sum_probs=124.9
Q ss_pred HHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcc
Q psy15226 117 TSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQ 196 (362)
Q Consensus 117 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (362)
..+...+|.+.++.|.+..+.++..+...++..++.++.|+++||+|||+.+..+....+++.+.+.. .++.
T Consensus 30 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~--------~~~~ 101 (406)
T PRK15402 30 DMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILL--------AQSI 101 (406)
T ss_pred hhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH--------HccH
Confidence 44445567777888999888888999999999999999999999999999999988888887776654 1222
Q ss_pred hHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhHhHH
Q psy15226 197 YIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSV 276 (362)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~ 276 (362)
+..+....+.+.+.....+..++.+.|.+|++.|+++.++......++..++|.+.+.+.++.+|++.+++.+++.++..
T Consensus 102 ~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~ 181 (406)
T PRK15402 102 EQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSF 181 (406)
T ss_pred HHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHH
Confidence 33333333333333233345557889999999999999998888888999999999999888999999988888877766
Q ss_pred hhhheeeccCC
Q psy15226 277 VFNYFYLMETK 287 (362)
Q Consensus 277 ~~~~~~~~e~~ 287 (362)
+..++..||++
T Consensus 182 ~~~~~~~~~~~ 192 (406)
T PRK15402 182 FGLWRAMPETA 192 (406)
T ss_pred HHHHHhCCCCC
Confidence 65555667764
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=9.3e-14 Score=125.25 Aligned_cols=163 Identities=13% Similarity=0.133 Sum_probs=123.5
Q ss_pred HHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcc
Q psy15226 117 TSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQ 196 (362)
Q Consensus 117 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (362)
.......|.+.++.|.++.+.++..+...++..++.++.|+++||+|||+.+..+.....++.+.... .++.
T Consensus 25 ~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~--------~~~~ 96 (394)
T PRK11652 25 TIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALF--------AHSL 96 (394)
T ss_pred HHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHH--------HccH
Confidence 44455578888888999889999999999999999999999999999999999988888877776544 1122
Q ss_pred hHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhHhHH
Q psy15226 197 YIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSV 276 (362)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~ 276 (362)
........+.+.+.....+....+..|.++.++|+.+.+..+....++..++|.+.+.+.+..||+..|++.++..++..
T Consensus 97 ~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~ 176 (394)
T PRK11652 97 TVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVT 176 (394)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence 33333333333332222344446778889989999999999999999999999999999888899999988877666555
Q ss_pred hhhheeeccCC
Q psy15226 277 VFNYFYLMETK 287 (362)
Q Consensus 277 ~~~~~~~~e~~ 287 (362)
++..++.||++
T Consensus 177 ~~~~~~~~~~~ 187 (394)
T PRK11652 177 FSMARWMPETR 187 (394)
T ss_pred HHHHHhCCccC
Confidence 55445667754
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.8e-13 Score=123.02 Aligned_cols=219 Identities=16% Similarity=0.085 Sum_probs=129.3
Q ss_pred chhhHHHHhhhhhhhHHHHHHHHHHHHHHHHHhh-ccCCChHHHHhcCCHHHHHHHHHhHcCCcccHHHHHHHHHHHHhh
Q psy15226 2 VGTLAILLIGNHVSYNSLNIALSILPVIFFILFS-FVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQE 80 (362)
Q Consensus 2 ~G~~~~~~l~~~~~Wr~~f~~~~~~~~~~~~~~~-~lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (362)
+|+.++..+....+||+.|++.++..++..+..+ +.||+++. +++ ++ .+
T Consensus 144 ~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--------------~~-~~------------ 193 (385)
T TIGR00710 144 VAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPETLPY---EAR--------------IQ-IS------------ 193 (385)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCC---ccc--------------CC-HH------------
Confidence 4555666666667999999998888777665444 47776531 000 00 00
Q ss_pred ccccccchhhhccCcchhHHHHHHHHHHHHHhhhhHHHHHHhHHHHhh-hcCCCCCchhHHHHHHHHHHHHHHHHHHHHh
Q psy15226 81 DLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLP-KLDNAYFGPDQCILVFMIIMFLSNFLQAPLM 159 (362)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 159 (362)
+...++++.++++..+...+.... ..........+.|.+++ +.|.++.+.+.......++..++.++.|++.
T Consensus 194 --~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~ 266 (385)
T TIGR00710 194 --TYFETFLLLLKSKMFWGYALIYGA-----SFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFI 266 (385)
T ss_pred --HHHHHHHHHHcCchhHHHHHHHHH-----HHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001123455555443322222111 11123455666777765 4588877888888889999999999999999
Q ss_pred hhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHH
Q psy15226 160 DILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASV 239 (362)
Q Consensus 160 dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~ 239 (362)
||+|||+.+..+.....++...+...... ...............+.+.....+.......|..| +.|+++.++.+.
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~ 342 (385)
T TIGR00710 267 KKWGAKSLLRMGLILFAVSAVLLEITAIL---GLGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGT 342 (385)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHHHHHh---ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHH
Confidence 99999998888777666665554331110 00111222222233333332233444467778777 578999999988
Q ss_pred HHHHHHHHHHHHHHHHHHhhch
Q psy15226 240 ALAFGSFITTKFHILITKSLGQ 261 (362)
Q Consensus 240 ~~~ig~~~~~~~~~~~~~~~g~ 261 (362)
....++.+.+.+.+...+..++
T Consensus 343 ~~~~~g~i~~~~~~~~~~~~~~ 364 (385)
T TIGR00710 343 LRLVLGAIVGYLVSLIHGNTAW 364 (385)
T ss_pred HHHHHHHHHHHHHHhccccChH
Confidence 8876666666666644333333
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.6e-14 Score=127.58 Aligned_cols=154 Identities=16% Similarity=0.120 Sum_probs=120.5
Q ss_pred HHHhhhhHHHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHH
Q psy15226 109 LFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLY 188 (362)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~ 188 (362)
...............|.+.++.|.++.+.++..+...++..++.++.|+++||+|||+++..+....+++.+...+
T Consensus 27 ~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~---- 102 (426)
T PRK12307 27 YVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGL---- 102 (426)
T ss_pred HHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH----
Confidence 3333334455666778878888999888899999999999999999999999999999999999999888877665
Q ss_pred hcCCCCcchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHH
Q psy15226 189 QGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIY 268 (362)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~~~ 268 (362)
.++.+..++...+.+.+.....+....++.|.+|+++|+++.++......+|..+++.+.+.+.+..+|++.+++.
T Consensus 103 ----~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~ 178 (426)
T PRK12307 103 ----ASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVG 178 (426)
T ss_pred ----HhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHH
Confidence 1233334444444444433334444578999999999999999999999999999999998888889999988764
Q ss_pred HH
Q psy15226 269 SS 270 (362)
Q Consensus 269 ~~ 270 (362)
..
T Consensus 179 ~~ 180 (426)
T PRK12307 179 LL 180 (426)
T ss_pred HH
Confidence 43
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.9e-14 Score=125.58 Aligned_cols=162 Identities=16% Similarity=0.156 Sum_probs=126.3
Q ss_pred HHHHHhHH-HHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCc
Q psy15226 117 TSMITYSS-TLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNF 195 (362)
Q Consensus 117 ~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (362)
.......| .+.++.|.+..+.++..+...++..++.++.|+++||+|||+++..+.++.+++.+...+ . ++
T Consensus 13 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~-------~-~~ 84 (352)
T PF07690_consen 13 SIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAF-------A-SN 84 (352)
T ss_dssp HHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-------H-CC
T ss_pred HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhh-------h-hh
Confidence 45556667 666777999999999999999999999999999999999999999999988888555443 1 23
Q ss_pred chHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhHhH
Q psy15226 196 QYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCS 275 (362)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~ 275 (362)
.+..+....+.+.+.....+....++.|.+|+++|+++.++.+....+|..+++.+.+.+.+..+|+..+++.+++.++.
T Consensus 85 ~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~ 164 (352)
T PF07690_consen 85 FWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIA 164 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHH
T ss_pred HHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhh
Confidence 33444444454444434445556899999999999999999999999999999999999988889999999999888888
Q ss_pred HhhhheeeccC
Q psy15226 276 VVFNYFYLMET 286 (362)
Q Consensus 276 ~~~~~~~~~e~ 286 (362)
.++...+.+++
T Consensus 165 ~il~~~~~~~~ 175 (352)
T PF07690_consen 165 AILFILFLPEP 175 (352)
T ss_dssp HHHHHCCC---
T ss_pred hhhHhhhhhhc
Confidence 66544445443
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.4e-14 Score=129.83 Aligned_cols=176 Identities=15% Similarity=0.132 Sum_probs=128.1
Q ss_pred cchhhhccCcchhHHHHHHHHHHHHHhhhhHHHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q psy15226 86 TGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRK 165 (362)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr 165 (362)
.++.+.++ +.+++.+.......+.............|.+.++.|.+..+.++..+...++..++.++.|+++||+|||
T Consensus 8 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r 85 (496)
T PRK03893 8 IPWYRHLN--RAQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRR 85 (496)
T ss_pred ccccccCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH
Confidence 34444444 2223333333333333333445666677888888899988889999999999999999999999999999
Q ss_pred hhhhhhhHhHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHH
Q psy15226 166 PLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGS 245 (362)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~ 245 (362)
+.+..+.+..+++.+...+ ..+.+.......+.+.+..+..+....++.|.+|+++|+.+.++......+|.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~--------~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~ 157 (496)
T PRK03893 86 LAMVISIVLFSVGTLACGF--------APGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGA 157 (496)
T ss_pred HHHHHHHHHHHHHHHHHHH--------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence 9999998888888777665 12233333333344433333344445789999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhchhHHHHHHHHh
Q psy15226 246 FITTKFHILITKSLGQHVIFFIYSSV 271 (362)
Q Consensus 246 ~~~~~~~~~~~~~~g~~~~~~~~~~~ 271 (362)
.+++.+.+.+.++.+|++.|.+..+.
T Consensus 158 ~~~~~~~~~l~~~~~w~~~f~~~~~~ 183 (496)
T PRK03893 158 VVAAQVYSLVVPVWGWRALFFIGILP 183 (496)
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 99999999999999999888764433
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.7e-14 Score=130.47 Aligned_cols=163 Identities=11% Similarity=-0.019 Sum_probs=118.1
Q ss_pred HHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcchH
Q psy15226 119 MITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYI 198 (362)
Q Consensus 119 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (362)
+....|.+.+ .|.++.+.++..+...++..++.++.|+++||+|||+.+..+.++.+++.+...... ....+...
T Consensus 46 ~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 120 (438)
T TIGR00712 46 FALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVP----WATSSIAI 120 (438)
T ss_pred HHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccc----cccchHHH
Confidence 4455665554 599988999999999999999999999999999999999888888887776654310 00111222
Q ss_pred HHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHH-hhchhHHHHHHHHhhHhHHh
Q psy15226 199 PYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITK-SLGQHVIFFIYSSVHFCSVV 277 (362)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~i~~~ 277 (362)
......+.+.+.....+.....+.|.+|+++|++++++.+....+++.+++.+.+...+ +.+|+..|++.+++.++..+
T Consensus 121 l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~ 200 (438)
T TIGR00712 121 MFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVAL 200 (438)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 22223333333322223334778899999999999999999999999999888776444 56899999988888777666
Q ss_pred hhheeeccC
Q psy15226 278 FNYFYLMET 286 (362)
Q Consensus 278 ~~~~~~~e~ 286 (362)
+.+++.||+
T Consensus 201 ~~~~~~~~~ 209 (438)
T TIGR00712 201 FAFAMMRDT 209 (438)
T ss_pred HHHHhccCC
Confidence 665666764
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.2e-13 Score=122.07 Aligned_cols=216 Identities=12% Similarity=0.053 Sum_probs=130.9
Q ss_pred chhhHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhccCCChHHHHhcCCHHHHHHHHHhHcCCcccHHHHHHHHHHHHhhc
Q psy15226 2 VGTLAILLIGNHVSYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQED 81 (362)
Q Consensus 2 ~G~~~~~~l~~~~~Wr~~f~~~~~~~~~~~~~~~~lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (362)
+|++++..+....|||+.|++.+++.++..+..++++|+++ +++ + +
T Consensus 145 ~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~-------------~---------------- 190 (401)
T PRK11043 145 LAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLRLKPSKK----ARK-Q-------------S---------------- 190 (401)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHcCCCCC----ccc-c-------------c----------------
Confidence 35556666666779999999999888887766666666542 000 0 0
Q ss_pred cccccchhhhccCcchhHHHHHHHHHHHHHhhhhHHHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhh
Q psy15226 82 LKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDI 161 (362)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr 161 (362)
+++.++++.++++..+...+..... ...+.....+.|.+.++.|.+..+.+.......++..++.++.+++.||
T Consensus 191 -~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r 264 (401)
T PRK11043 191 -QDALTFKQLLKSKTYLGNVLIFAAC-----SAAFFAWLTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQK 264 (401)
T ss_pred -hHHHHHHHHHcChhHHHHHHHHHHH-----HHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0112345566654433322211111 1123445567788888888887777777777788889999999999999
Q ss_pred cCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHH
Q psy15226 162 LGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVAL 241 (362)
Q Consensus 162 ~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~ 241 (362)
+|+|+.........+++.+.+...... ...............+.+.....+.......|..| +.|+++.|+.+..+
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~ 340 (401)
T PRK11043 265 WGGEQLLPWLLVLFAVSVIAIWLASLL---SHPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQ 340 (401)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHh---ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHH
Confidence 999987665555544444332221111 11122222222223333333333444455666666 57999999999998
Q ss_pred HHHHHHHHHHHHHHHHhhch
Q psy15226 242 AFGSFITTKFHILITKSLGQ 261 (362)
Q Consensus 242 ~ig~~~~~~~~~~~~~~~g~ 261 (362)
..++..++.+.+.+.+....
T Consensus 341 ~~~~~~~~~~~g~l~~~~~~ 360 (401)
T PRK11043 341 LGLCFLASLLVSALISTPLL 360 (401)
T ss_pred HHHHHHHHHHHHHccCCChh
Confidence 88999999998888764333
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.3e-14 Score=133.64 Aligned_cols=152 Identities=9% Similarity=0.041 Sum_probs=116.3
Q ss_pred hcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHH
Q psy15226 129 KLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAA 208 (362)
Q Consensus 129 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (362)
+.+.+..+.+...+.+.+++.++.+++|+++||+|||+.+..+.++.+++.++.... ........++..++.+.
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~------~~~~~~~l~~~r~~~G~ 143 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWA------AGGGIALVVFCRVIQGL 143 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHH------HHcCchHHHHHHHHHHH
Confidence 456777777889999999999999999999999999999999888877776664331 01122333333444444
Q ss_pred HhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHh-hchhHHHHHHHHhhHhHHhhhheeeccC
Q psy15226 209 SYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKS-LGQHVIFFIYSSVHFCSVVFNYFYLMET 286 (362)
Q Consensus 209 ~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~i~~~~~~~~~~e~ 286 (362)
+.....+....+++|.+|+++|+++.++.+....+|..+++.+.+.+.+. .||+..|.+.++..++..++.+.+.+|+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~ 222 (465)
T TIGR00894 144 AQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADD 222 (465)
T ss_pred hcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCC
Confidence 43444555568999999999999999999999999999999999999888 4999999988887766655554444443
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.3e-13 Score=117.13 Aligned_cols=234 Identities=14% Similarity=0.122 Sum_probs=160.7
Q ss_pred HHHHhhhhhh---hHHHHHHHHHHHHHHHHHhhc-cCCChHHHHhcCCHHHHHHHHHhHcCCcccHHHHHHHHHHHHhhc
Q psy15226 6 AILLIGNHVS---YNSLNIALSILPVIFFILFSF-VPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQED 81 (362)
Q Consensus 6 ~~~~l~~~~~---Wr~~f~~~~~~~~~~~~~~~~-lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (362)
+++.+....+ ||....+-.++.++..+..++ +.|.|......+
T Consensus 158 ~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~--------------------------------- 204 (417)
T COG2223 158 VAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVK--------------------------------- 204 (417)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhcccc---------------------------------
Confidence 3444445557 999998888888886665544 777774210000
Q ss_pred cccc-cchhhhccCcchhHHHHHHHHHHHHHhhhhHHHHHHhHHHHhhhc-CCCCCchhHHHHHHHHHHHHHHHHHHHHh
Q psy15226 82 LKSK-TGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKL-DNAYFGPDQCILVFMIIMFLSNFLQAPLM 159 (362)
Q Consensus 82 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 159 (362)
+.. ..++.+++++..|. +...+...+.++-.+..++|.++++. |.++.+++.......+.+.+..+.+|+++
T Consensus 205 -~~~~~~~~~v~~~~~~W~-----lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~Ls 278 (417)
T COG2223 205 -PQLPAQLKAVFSNKDTWL-----LSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLS 278 (417)
T ss_pred -ccchhHHHHHhcCcchHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhh
Confidence 011 23455565433332 22233344456678889999998876 99988888999999999999999999999
Q ss_pred hhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHh-hcccccchhhcccCCCcchhhhhhHHHH
Q psy15226 160 DILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASY-YGIGCLPNILVSELFPINVRCQASSCAS 238 (362)
Q Consensus 160 dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~~p~~~r~~~~~~~~ 238 (362)
||+|.++++......++++........... ....+....+.......... .+.+.. +.++..++|. +-|.+.|+..
T Consensus 279 DR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~l~l~~~~G~GnGsv-fk~Ip~if~~-~~G~v~G~vg 355 (417)
T COG2223 279 DRIGGRRVTLAVFVGMALAAALLSLFLTGF-GHGGSFVVFVAVFLALFVFAGLGNGSV-FKMIPVIFPK-ETGAVTGIVG 355 (417)
T ss_pred hhccchhHHHHHHHHHHHHHHHHHcccccc-ccCcchHHHHHHHHHHHHHhccCcchh-eeechHHHHh-hhhHHHHHHH
Confidence 999999999999988888888776511000 00012222222222222233 444444 4888888876 5688999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc-hhHHHHHHHHhhHhHHhhhhe
Q psy15226 239 VALAFGSFITTKFHILITKSLG-QHVIFFIYSSVHFCSVVFNYF 281 (362)
Q Consensus 239 ~~~~ig~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~i~~~~~~~ 281 (362)
..+.+|++..|...+...+..| +...|+++....+++.+..+.
T Consensus 356 a~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~ 399 (417)
T COG2223 356 AIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWA 399 (417)
T ss_pred HhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888 777888888888888766644
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.4e-13 Score=119.21 Aligned_cols=151 Identities=11% Similarity=0.105 Sum_probs=110.2
Q ss_pred HHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcc
Q psy15226 117 TSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQ 196 (362)
Q Consensus 117 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (362)
.....+.|.+.++.|.+..+.+.......++.+++.+..|++.||+|+|+.+..+.....++.+.... ..
T Consensus 217 ~~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~----------~~ 286 (381)
T PRK03633 217 GSLYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAMLS----------QA 286 (381)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHhh----------hH
Confidence 33445678888888888777778888888999999999999999999999888776666665443211 11
Q ss_pred hHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhHhHH
Q psy15226 197 YIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSV 276 (362)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~ 276 (362)
.......+.+.+.....|...+++.|..|+++++...+..+...++|..++|.+.|.+.++.|+...|.+.+.+.++..
T Consensus 287 -~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~ 365 (381)
T PRK03633 287 -AMAPALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYL 365 (381)
T ss_pred -HHHHHHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence 1111222222222233355557788999888888888888888899999999999999999999988888777776554
Q ss_pred hh
Q psy15226 277 VF 278 (362)
Q Consensus 277 ~~ 278 (362)
+.
T Consensus 366 ~~ 367 (381)
T PRK03633 366 LM 367 (381)
T ss_pred HH
Confidence 43
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.1e-13 Score=126.90 Aligned_cols=159 Identities=11% Similarity=0.092 Sum_probs=119.4
Q ss_pred HHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcc
Q psy15226 117 TSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQ 196 (362)
Q Consensus 117 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (362)
.....+.|.+.++.|.+..+.++..+...++..++.++.|+++||+|||+.++.+.++.+++.+.+++ . ++.
T Consensus 36 ~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~-------~-~~~ 107 (455)
T TIGR00892 36 KAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASF-------S-SNV 107 (455)
T ss_pred cchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHH-------h-hhH
Confidence 44566788888899999889999999988889999999999999999999999988888877776655 1 122
Q ss_pred hHHHHHH-HHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhHhH
Q psy15226 197 YIPYITT-LLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCS 275 (362)
Q Consensus 197 ~~~~~~~-~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~ 275 (362)
+...... .+.+.+.....+.....+.+.+| ++|+++.++.+....+|..++|.+.+.+.+..||+++|++.+++.+++
T Consensus 108 ~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~ 186 (455)
T TIGR00892 108 IELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHC 186 (455)
T ss_pred HHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 2222211 23333332222233367788886 789999999999999999999999999999999999999998877766
Q ss_pred Hhhhheeec
Q psy15226 276 VVFNYFYLM 284 (362)
Q Consensus 276 ~~~~~~~~~ 284 (362)
.+..++..+
T Consensus 187 ~v~~~~~~~ 195 (455)
T TIGR00892 187 CVCGALMRP 195 (455)
T ss_pred HHHHHHhCC
Confidence 554433333
|
|
| >KOG1330|consensus | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.7e-15 Score=131.22 Aligned_cols=181 Identities=12% Similarity=0.111 Sum_probs=143.4
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHH
Q psy15226 100 AFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLT 179 (362)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~ 179 (362)
..++..+........ -+.+..-.+...+.++.++...+++.....+...++++++|+++||++||+++..|..+..++.
T Consensus 34 ~l~il~~vnlmny~D-r~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av 112 (493)
T KOG1330|consen 34 TLVILCLVNLMNYAD-RYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAV 112 (493)
T ss_pred HHHHHHHHHHHHHhh-hhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHH
Confidence 334444444443333 3555555666666779998999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15226 180 FSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSL 259 (362)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~ 259 (362)
+..++. ...+...++..+.+.+-..+.++..++++|.+|..+|+++.++.++...+|..+|-..+..+.+..
T Consensus 113 ~~~~fs--------~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~ 184 (493)
T KOG1330|consen 113 FASGFS--------NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLT 184 (493)
T ss_pred HHHHHH--------HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCc
Confidence 988771 233443444444444447777888899999999999999999999999999988888887777776
Q ss_pred c-hhHHHHHHHHhhHhHHhhhheeeccCCCC
Q psy15226 260 G-QHVIFFIYSSVHFCSVVFNYFYLMETKQK 289 (362)
Q Consensus 260 g-~~~~~~~~~~~~~i~~~~~~~~~~e~~~~ 289 (362)
+ ||+.|...+++.++..++..++.+|.+++
T Consensus 185 ~~Wr~af~~~avl~vi~~~L~~~f~~eP~rg 215 (493)
T KOG1330|consen 185 FWWRWAFRGSAVLGVIVGLLVFLFVREPERG 215 (493)
T ss_pred cceEEEEEeehHHHHHHHHHHHhhccCcccc
Confidence 6 99999999999999988888888887654
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.5e-13 Score=123.81 Aligned_cols=217 Identities=16% Similarity=0.155 Sum_probs=121.1
Q ss_pred chhhHHHHhhhhhhhHHHHHHHHHHHHHHHHHh-hccCCChHHHHhcCCHHHHHHHHHhHcCCcccHHHHHHHHHHHHhh
Q psy15226 2 VGTLAILLIGNHVSYNSLNIALSILPVIFFILF-SFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQE 80 (362)
Q Consensus 2 ~G~~~~~~l~~~~~Wr~~f~~~~~~~~~~~~~~-~~lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (362)
+|++++..+....+||+.|++.+++.++..+.. +++||++.. +++ ++.
T Consensus 142 ~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~-------------~~~--------------- 190 (392)
T PRK10473 142 LAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILKETRPA---RAP-------------AAS--------------- 190 (392)
T ss_pred HHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCCCCc---ccC-------------Ccc---------------
Confidence 345555555566799999999988887766654 447887420 000 000
Q ss_pred ccccccchhhhccCcchhHHHHHHHHHHHHHhhhhHHHHHHhHHHHhh-hcCCCCCchhHHHHHHHHHHHHHHHHHHHHh
Q psy15226 81 DLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLP-KLDNAYFGPDQCILVFMIIMFLSNFLQAPLM 159 (362)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 159 (362)
......++.++++..+...+....... .......+.|.+.. +.|++..+.+......+++.+++.++.+++.
T Consensus 191 --~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~ 263 (392)
T PRK10473 191 --SKPRENSESLLNRFFLSRLVITTLSVT-----VILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFAL 263 (392)
T ss_pred --chHHHHHHHHhCHHHHHHHHHHHHHHH-----HHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000112234444333332222221111 11233445565554 4588877777788888999999999999999
Q ss_pred hhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHh-hcccccchhhcccCCCcchhhhhhHHHH
Q psy15226 160 DILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASY-YGIGCLPNILVSELFPINVRCQASSCAS 238 (362)
Q Consensus 160 dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~~p~~~r~~~~~~~~ 238 (362)
||+|||+.+..+..+..++.+.+... . ..............+. .+... .+..+..|.++|+ +..+
T Consensus 264 ~r~g~~~~~~~~~~~~~~~~~~~~~~-------~-~~~~~~~~~~l~~~g~~~~~~~---~~~~~~~~~~~~~---g~~~ 329 (392)
T PRK10473 264 GIFKPRTLMLTSQVLFLAAGITLALS-------P-SHAVSLFGITLICAGFSVGFGV---AMSQALGPFSLRA---GVAS 329 (392)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHHH-------H-HHHHHHHHHHHHHHHHHHHhHH---HHHHHhccCcccc---cHHH
Confidence 99999999888887777766655441 1 1112222222222222 22211 2334455554443 3334
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhHHHHHHHH
Q psy15226 239 VALAFGSFITTKFHILITKSLGQHVIFFIYSS 270 (362)
Q Consensus 239 ~~~~ig~~~~~~~~~~~~~~~g~~~~~~~~~~ 270 (362)
....++..+++.+.+.+.+..|+.......+.
T Consensus 330 ~~~~~~~~~g~~~~~~l~~~~g~~~~~~~~~~ 361 (392)
T PRK10473 330 STLGIAQVCGSSLWIWLAAVLGISAWNMLIGI 361 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence 44556667777777777777776543443333
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.2e-14 Score=125.64 Aligned_cols=163 Identities=12% Similarity=0.199 Sum_probs=129.0
Q ss_pred HHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcc
Q psy15226 117 TSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQ 196 (362)
Q Consensus 117 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (362)
......+|.+.++.|.+..+.++..+...++..++.++.|+++||+|||+.+..+..+.+++...+.. .++.
T Consensus 8 ~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~--------~~~~ 79 (377)
T PRK11102 8 DMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACAL--------AQTI 79 (377)
T ss_pred HHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHH--------HccH
Confidence 44556778888888999889999999999999999999999999999999999998888888877655 1223
Q ss_pred hHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhHhHH
Q psy15226 197 YIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSV 276 (362)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~ 276 (362)
........+.+.+.....+...+++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..+|+..+++.+.+.++..
T Consensus 80 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 159 (377)
T PRK11102 80 DQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAA 159 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHH
Confidence 33333334444333333344458899999999999999999999999999999999999998999999988888777766
Q ss_pred hhhheeeccCC
Q psy15226 277 VFNYFYLMETK 287 (362)
Q Consensus 277 ~~~~~~~~e~~ 287 (362)
+...+..||++
T Consensus 160 ~~~~~~~~~~~ 170 (377)
T PRK11102 160 ALVFFFIPETL 170 (377)
T ss_pred HHHHHhCCccC
Confidence 66556667653
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.5e-13 Score=122.48 Aligned_cols=160 Identities=12% Similarity=-0.002 Sum_probs=122.2
Q ss_pred HHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcc
Q psy15226 117 TSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQ 196 (362)
Q Consensus 117 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (362)
.......|.+..+.+.+..+.++..+...++..++.++.|+++||+|||+++..+..+..++.+........ ...+.
T Consensus 16 ~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 92 (365)
T TIGR00900 16 AITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALL---GGLNI 92 (365)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHc---CCCcH
Confidence 445566677888888887888999999999999999999999999999999999888877776665542211 01133
Q ss_pred hHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhHhHH
Q psy15226 197 YIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSV 276 (362)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~ 276 (362)
+..++...+.+.+.....+...+++.|.+|+++|+++.++.+....+|..+++.+.+.+.+..||+..+++.++..+++.
T Consensus 93 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~ 172 (365)
T TIGR00900 93 WQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISA 172 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 33333344444333333445558999999999999999999999999999999999999999999998888777666554
Q ss_pred hhh
Q psy15226 277 VFN 279 (362)
Q Consensus 277 ~~~ 279 (362)
+..
T Consensus 173 ~~~ 175 (365)
T TIGR00900 173 LLI 175 (365)
T ss_pred HHH
Confidence 443
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.7e-13 Score=123.12 Aligned_cols=171 Identities=17% Similarity=0.158 Sum_probs=125.6
Q ss_pred hhHHHHHHHHHHHHHhhhhHHHHHHhHHHHhhh-cCCCCCchhHHHHHHHHHHHHHHHHHHHHhhh-cCCchhhhhhhHh
Q psy15226 97 NRRAFTLVMAASLFQRLGGITSMITYSSTLLPK-LDNAYFGPDQCILVFMIIMFLSNFLQAPLMDI-LGRKPLSCFSAAL 174 (362)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~grr~~~~~~~~~ 174 (362)
+++.++..+...+...+ +++.+..+++.++++ .|.+..++.+....+.....+..+++|+++|| +|||+++..+.++
T Consensus 12 ~p~~~~~~~~~~~~er~-~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~ 90 (489)
T PRK10207 12 QPRPFFMIFFVELWERF-GYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIV 90 (489)
T ss_pred CChhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHH
Confidence 34455555555554444 357777777777654 58887888888888888888888999999999 9999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhcccccchhhcccCCCcc--hhhhhhHHHHHHHHHHHHHHHHHH
Q psy15226 175 GCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPIN--VRCQASSCASVALAFGSFITTKFH 252 (362)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~--~r~~~~~~~~~~~~ig~~~~~~~~ 252 (362)
.+++.+.+.+ .........+...+.+.+.+...+...+++.|.+|++ +|+.+.++.+...++|..++|.++
T Consensus 91 ~~~g~~~~~~-------~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~ 163 (489)
T PRK10207 91 LAIGYFMTGM-------SLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLA 163 (489)
T ss_pred HHHHHHHHHH-------hccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHH
Confidence 9999888766 1111222223333333333334445558999999887 457789999999999999999999
Q ss_pred HHHHHhhchhHHHHHHHHhhHhH
Q psy15226 253 ILITKSLGQHVIFFIYSSVHFCS 275 (362)
Q Consensus 253 ~~~~~~~g~~~~~~~~~~~~~i~ 275 (362)
+++.++.||++.|++.++..+++
T Consensus 164 g~l~~~~gw~~~F~i~~i~~~~~ 186 (489)
T PRK10207 164 PVIADKFGYSVTYNLCGAGLIIA 186 (489)
T ss_pred HHHHHhhChHHHHHHHHHHHHHH
Confidence 99999999999998865544433
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.1e-13 Score=119.83 Aligned_cols=157 Identities=13% Similarity=0.139 Sum_probs=118.4
Q ss_pred HHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcc
Q psy15226 117 TSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQ 196 (362)
Q Consensus 117 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (362)
.......|.+.++.|.++.+.++..+...++..++.+++|+++||+|||+.+..+..+..++.+.+.. ..+.
T Consensus 23 ~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--------~~~~ 94 (401)
T PRK11043 23 DMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLW--------VESA 94 (401)
T ss_pred HHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHH--------hcCH
Confidence 34444455567778999899999999999999999999999999999999999888888777766654 1223
Q ss_pred hHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhHhHH
Q psy15226 197 YIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSV 276 (362)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~ 276 (362)
+...+...+.+.+.....+...+++.|.+|+++++...+..+....++..++|.+.+.+.++.||+..+++.+++.++..
T Consensus 95 ~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~ 174 (401)
T PRK11043 95 AQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLI 174 (401)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Confidence 33333333333333222233346788999999888888888888899999999999999999999999988877776665
Q ss_pred hhhhe
Q psy15226 277 VFNYF 281 (362)
Q Consensus 277 ~~~~~ 281 (362)
+....
T Consensus 175 ~~~~~ 179 (401)
T PRK11043 175 LPTLR 179 (401)
T ss_pred HHHHH
Confidence 55433
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.1e-12 Score=122.08 Aligned_cols=146 Identities=14% Similarity=0.051 Sum_probs=107.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCC-c---chHHHHHHHHHHHHh
Q psy15226 135 FGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPN-F---QYIPYITTLLYAASY 210 (362)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~ 210 (362)
.+.++..+...++..++.+++|+++||+|||+.+..+.++..++.++.+. .... . ....++...+.+.+.
T Consensus 56 ~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~------~~~~~~~~~~~~~~~~r~l~G~~~ 129 (502)
T TIGR00887 56 SVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGL------SPGSSPKSVMATLCFWRFWLGVGI 129 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH------ccCcccchHHHHHHHHHHHHHHHH
Confidence 34567888899999999999999999999999999988888888776655 1111 1 223344444444444
Q ss_pred hcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHH-----------------------hhchhHHHHH
Q psy15226 211 YGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITK-----------------------SLGQHVIFFI 267 (362)
Q Consensus 211 ~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~-----------------------~~g~~~~~~~ 267 (362)
++..+....+++|.+|++.|+++.++.+....+|..+++.+...+.. ..+||..+.+
T Consensus 130 g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~ 209 (502)
T TIGR00887 130 GGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGF 209 (502)
T ss_pred hhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHH
Confidence 44445555999999999999999999999999999888887765432 1379988876
Q ss_pred HHHhhHhHHhhhheeeccCC
Q psy15226 268 YSSVHFCSVVFNYFYLMETK 287 (362)
Q Consensus 268 ~~~~~~i~~~~~~~~~~e~~ 287 (362)
.++..++. .+..+++||+.
T Consensus 210 ~~ip~~i~-~~~~~~lpESp 228 (502)
T TIGR00887 210 GAVPALLA-LYFRLTIPETP 228 (502)
T ss_pred HHHHHHHH-HHHHHhCCCCH
Confidence 66655554 34446789973
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.3e-13 Score=122.21 Aligned_cols=237 Identities=13% Similarity=0.077 Sum_probs=153.9
Q ss_pred CchhhHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhccCCChHHHHhcCCHHHHHHHHHhHcCCcccHHHHHHHHHHHHhh
Q psy15226 1 MVGTLAILLIGNHVSYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQE 80 (362)
Q Consensus 1 ~~G~~~~~~l~~~~~Wr~~f~~~~~~~~~~~~~~~~lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (362)
++|+.+|+++...+|=.+.|.+.++.-++........+..++ +++. . .+.-.+
T Consensus 153 ~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~~----~~~~-~--------------~e~~~~-------- 205 (524)
T PF05977_consen 153 IIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKPPPP----PSSL-P--------------RERFFS-------- 205 (524)
T ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc----cccc-c--------------hhhhhh--------
Confidence 468999999988889889999888765554443333322210 0000 0 000000
Q ss_pred ccccccchhhhccCcchhHHHHHHHHHHHHHhhhhHHHHHHhHHHHhhhc-CCCCCchhHHHHHHHHHHHHHHHHHHHHh
Q psy15226 81 DLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKL-DNAYFGPDQCILVFMIIMFLSNFLQAPLM 159 (362)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 159 (362)
+-+..++-+.++|..+..++... ...+ . .......+|.+.++. |.+....+++.+..+++.++|+++.+++.
T Consensus 206 --~l~~G~ryv~~~~~l~~~l~~~~-~~~l---~-~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~ 278 (524)
T PF05977_consen 206 --ALREGLRYVRSSPPLRSVLLRSF-LFNL---F-ASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLR 278 (524)
T ss_pred --hHHHHHHHHhcchHHHHHHHHHH-HHHH---h-hhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 11112333333332222222111 1111 1 123344567777654 77777888999999999999999999999
Q ss_pred hhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHH
Q psy15226 160 DILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASV 239 (362)
Q Consensus 160 dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~ 239 (362)
+|+++++++..+.+..+++.+.+++ ..+.+.....+++.+.+.........+...+..|++.||++.+++.+
T Consensus 279 ~~~~~~~lv~~~~~~~a~~~~~lal--------~~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~ 350 (524)
T PF05977_consen 279 RRLSSRRLVLLASLLFALALLLLAL--------SPSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQM 350 (524)
T ss_pred cccCcchhhHHHHHHHHHHHHHHhc--------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHH
Confidence 9999999888888888877777655 22334444444444444433333334788999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhHhHHhhh
Q psy15226 240 ALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFN 279 (362)
Q Consensus 240 ~~~ig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~ 279 (362)
....+..+|..+.|.+.+..|.+..+.+.++..+++.++.
T Consensus 351 ~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~ 390 (524)
T PF05977_consen 351 VFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIA 390 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999888877766655555444
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.3e-13 Score=123.57 Aligned_cols=156 Identities=15% Similarity=0.120 Sum_probs=111.9
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHH--hcCCCCc--chHHHHHHHHH
Q psy15226 131 DNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLY--QGELPNF--QYIPYITTLLY 206 (362)
Q Consensus 131 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~ 206 (362)
+.+..+.++..+...++..++++++|+++||+|||++++.+..+..++.+..++.... .....+. ....++..++.
T Consensus 51 ~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~ 130 (479)
T PRK10077 51 SAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIG 130 (479)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHH
Confidence 6677788899999999999999999999999999999999988888777665531000 0000011 12223333444
Q ss_pred HHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHH--------HhhchhHHHHHHHHhhHhHHhh
Q psy15226 207 AASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILIT--------KSLGQHVIFFIYSSVHFCSVVF 278 (362)
Q Consensus 207 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~--------~~~g~~~~~~~~~~~~~i~~~~ 278 (362)
+.+.++..+...++++|.+|+++|+.++++.+....+|..+++.+.+.+. +..|||+.|++.++..++..+.
T Consensus 131 G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~ 210 (479)
T PRK10077 131 GIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLML 210 (479)
T ss_pred hhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHH
Confidence 44444445555689999999999999999999888889888877655443 3468999998877776666444
Q ss_pred hheeeccCC
Q psy15226 279 NYFYLMETK 287 (362)
Q Consensus 279 ~~~~~~e~~ 287 (362)
.+++||+.
T Consensus 211 -~~~l~~s~ 218 (479)
T PRK10077 211 -LYFVPETP 218 (479)
T ss_pred -HHcCCCCc
Confidence 46678874
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=9e-13 Score=118.79 Aligned_cols=156 Identities=12% Similarity=0.047 Sum_probs=119.7
Q ss_pred HHHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCc
Q psy15226 116 ITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNF 195 (362)
Q Consensus 116 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (362)
........|.+.++.|.+..+.++..+...++..++.+++|+++||+|||+.+..+..+.+++.+...+ .++
T Consensus 23 ~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~--------~~~ 94 (394)
T PRK03699 23 VIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMF--------SHS 94 (394)
T ss_pred HHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH--------cch
Confidence 456677788888888999888899999999999999999999999999999999888888887777655 122
Q ss_pred chHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHH-hhchhHHHHHHHHhhHh
Q psy15226 196 QYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITK-SLGQHVIFFIYSSVHFC 274 (362)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~i 274 (362)
.+.......+.+.+.....+....++.|.+|+++|+.+.+..+....+++.++|.+.+.+.+ ..||++.|.+.+++.++
T Consensus 95 ~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~ 174 (394)
T PRK03699 95 LALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVA 174 (394)
T ss_pred HHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 33333333444433322233444788999999999999999888888999999998887765 57999999887777665
Q ss_pred HHhhh
Q psy15226 275 SVVFN 279 (362)
Q Consensus 275 ~~~~~ 279 (362)
..++.
T Consensus 175 ~~~~~ 179 (394)
T PRK03699 175 IFILT 179 (394)
T ss_pred HHHHH
Confidence 54443
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.5e-12 Score=117.14 Aligned_cols=224 Identities=11% Similarity=0.015 Sum_probs=137.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhc-cCCChHHHHhcCCHHHHHHHHHhHcCCcccHHHHHHHHHHHHhhccccccchhhh
Q psy15226 13 HVSYNSLNIALSILPVIFFILFSF-VPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGYLEL 91 (362)
Q Consensus 13 ~~~Wr~~f~~~~~~~~~~~~~~~~-lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (362)
..+||.+.++-+++.++..++.++ ++|.|. ++.+..+..+.
T Consensus 207 ~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~--------------------------------------~~~~~~~~~~v 248 (462)
T PRK15034 207 VMSLANAAWIWVPLLAIATIAAWSGMNDIAS--------------------------------------SRASIADQLPV 248 (462)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCCccc--------------------------------------cccCHHHHHHH
Confidence 345888888888877776665554 554431 00111234456
Q ss_pred ccCcchhHHHHHHHHHHHHHhhhhHHHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhh
Q psy15226 92 LTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFS 171 (362)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~ 171 (362)
+|+|..|...+ .++..+.++.++..++|.+.++ .++.........+..+...++.+++|+++||+|+|+++.++
T Consensus 249 lk~~~~Wllsl-----ly~~tFG~fvg~s~~lp~~~~~-~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~ 322 (462)
T PRK15034 249 LQRLHLWLLSL-----LYLATFGSFIGFSAGFAMLAKT-QFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLIN 322 (462)
T ss_pred hCCCchhHHHH-----HHHHHHHHHHHHHHHHHHHHHH-HcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHH
Confidence 77654332222 2233444556677788888776 44433333344556788899999999999999999999988
Q ss_pred hHhHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHh-hcccccchhhcccCCCc---------------------ch
Q psy15226 172 AALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASY-YGIGCLPNILVSELFPI---------------------NV 229 (362)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~~p~---------------------~~ 229 (362)
.+...++....... .+.....+............... .+.+++ +.++.+.+|+ ++
T Consensus 323 ~i~~~i~~~~~~l~--lp~~~~~~~~~~~~~~~~l~~~~G~gngsv-fk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (462)
T PRK15034 323 FIFMAIFSALLFLT--LPGTGSGNFIAFYAVFMGLFLTAGLGSGST-FQMIAVIFRQITIYRVKMKGGSDEQAQREAVTE 399 (462)
T ss_pred HHHHHHHHHHHHHH--hccccccHHHHHHHHHHHHHHHhcccchHH-HHhhHHHHhhhhhhcccccccchhHHhhHHHHH
Confidence 88777766443221 11001111122222121111222 333333 4677788874 14
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc-hhHHHHHHHHhhHhHHhhhheee
Q psy15226 230 RCQASSCASVALAFGSFITTKFHILITKSLG-QHVIFFIYSSVHFCSVVFNYFYL 283 (362)
Q Consensus 230 r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~i~~~~~~~~~ 283 (362)
-|.+.|+....+.+|+++.|.+.+...+..| +...++.+.+..+++.++.+...
T Consensus 400 ~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y 454 (462)
T PRK15034 400 TAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVY 454 (462)
T ss_pred HHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 6788889999999999999999888887765 55677777777777777776543
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.3e-13 Score=119.85 Aligned_cols=160 Identities=12% Similarity=0.054 Sum_probs=121.8
Q ss_pred HHHHHhHHHHh-hhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCc
Q psy15226 117 TSMITYSSTLL-PKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNF 195 (362)
Q Consensus 117 ~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (362)
+....+.+.++ ++.|.+..+.+...+...+...+..+++|+++||+|||+++..+....+++.+.+.. .++
T Consensus 27 ~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~--------~~~ 98 (400)
T PRK11646 27 FVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAI--------AHE 98 (400)
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHH--------hcc
Confidence 44455556554 556999888899999889999999999999999999999999999998888877655 123
Q ss_pred chHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhHhH
Q psy15226 196 QYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCS 275 (362)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~ 275 (362)
.+.......+.+.+.....+...+++.|.+|+++|+++.++.+....+|..++|.+.+.+. ..||++.|++.+...++.
T Consensus 99 ~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~ 177 (400)
T PRK11646 99 PWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLA 177 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHH
Confidence 3333333333333333333444578899999999999999999999999999999999998 689999998887776665
Q ss_pred Hhhhheeecc
Q psy15226 276 VVFNYFYLME 285 (362)
Q Consensus 276 ~~~~~~~~~e 285 (362)
.++..+..||
T Consensus 178 ~i~~~~~~~~ 187 (400)
T PRK11646 178 AAFNAWLLPA 187 (400)
T ss_pred HHHHHHhCCc
Confidence 5444445555
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.4e-12 Score=117.70 Aligned_cols=228 Identities=9% Similarity=0.007 Sum_probs=131.7
Q ss_pred chhhHHHHhhhhhhhHHHHHHHHHHHHHHHHH-hhccCCChHHHHhcCCHHHHHHHHHhHcCCcccHHHHHHHHHHHHhh
Q psy15226 2 VGTLAILLIGNHVSYNSLNIALSILPVIFFIL-FSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQE 80 (362)
Q Consensus 2 ~G~~~~~~l~~~~~Wr~~f~~~~~~~~~~~~~-~~~lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (362)
+|+++++.+. .+|||+.|++.++..++..++ .+++||.+. .+ . .+
T Consensus 150 ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~-----~~---------------~-~~------------ 195 (400)
T PRK11646 150 IGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPAYKL-----ST---------------V-RT------------ 195 (400)
T ss_pred HHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCcccc-----cc---------------c-ch------------
Confidence 4666666666 569999999988877765544 334665320 00 0 00
Q ss_pred ccccccchhhhccCcchhHHHHHHHHHHHHHhhhhHHHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhh
Q psy15226 81 DLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMD 160 (362)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d 160 (362)
+.+.++++.++++..+...+.... .. ........+.|.+.++.+.++.+.++.....+++...+....+++.|
T Consensus 196 --~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~ 268 (400)
T PRK11646 196 --PVREGMTRVLRDKRFVTYVLTLTG-YY----MLAVQVMLMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSE 268 (400)
T ss_pred --hhHHHHHHHHcCchHHHHHHHHHH-HH----HHHHHHHHhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001134455665443322111111 11 11122345678888776556566666666666666655555566555
Q ss_pred -hcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHH
Q psy15226 161 -ILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASV 239 (362)
Q Consensus 161 -r~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~ 239 (362)
|++.++.+..+..+.+++...+.. . ++.........+++.+.....+...+++.|..|++.||++.|+.+.
T Consensus 269 ~r~~~~~~~~~~~~~~~~~~~~l~~-------~-~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~ 340 (400)
T PRK11646 269 KRFRLEHRLMAGLLIMSLSMFPIGM-------V-SNLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRL 340 (400)
T ss_pred HhcchhHHHHHHHHHHHHHHHHHHH-------h-hhHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHH
Confidence 566566666666666666554433 1 1222222223333333322233444788999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhc----hhHHHHHHHHhhHhHHhh
Q psy15226 240 ALAFGSFITTKFHILITKSLG----QHVIFFIYSSVHFCSVVF 278 (362)
Q Consensus 240 ~~~ig~~~~~~~~~~~~~~~g----~~~~~~~~~~~~~i~~~~ 278 (362)
...+|..++|.+.|.+.++.+ ....++..+++.++..+.
T Consensus 341 ~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (400)
T PRK11646 341 GLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLLA 383 (400)
T ss_pred HHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHHH
Confidence 999999999999999988753 234455545555554333
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.4e-12 Score=116.87 Aligned_cols=211 Identities=12% Similarity=0.121 Sum_probs=117.9
Q ss_pred chhhHHHHhhhhhhhHHHHHHHHHHHHHHHHH-hhccCCChHHHHhcCCHHHHHHHHHhHcCCcccHHHHHHHHHHHHhh
Q psy15226 2 VGTLAILLIGNHVSYNSLNIALSILPVIFFIL-FSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQE 80 (362)
Q Consensus 2 ~G~~~~~~l~~~~~Wr~~f~~~~~~~~~~~~~-~~~lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (362)
+|+.++..+....+||+.|++.+++.++..+. .+++||+++- +++ ++.+.+
T Consensus 130 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-------------~~~~~~------------ 181 (377)
T PRK11102 130 LAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIPETLPK---ERR-------------QPFHLR------------ 181 (377)
T ss_pred HHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCccCcc---ccc-------------CCCChH------------
Confidence 34555555666679999999988888776554 4457886520 000 000000
Q ss_pred ccccccchhhhccCcchhHHHHHHHHHHHHHhhhhHHHHHHhHHHHhhh-cCCCCCchhHHHHHHHHHHHHHHHHHHHHh
Q psy15226 81 DLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPK-LDNAYFGPDQCILVFMIIMFLSNFLQAPLM 159 (362)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 159 (362)
+...++++.++++..+...+ . ....+.+......+.|.+..+ .|.++.+.+.......++..++.++.|++.
T Consensus 182 --~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~ 254 (377)
T PRK11102 182 --TTIRNFASLFRHKRVLGYML----A-SGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFV 254 (377)
T ss_pred --HHHHHHHHHHcChHHHHHHH----H-HHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00112344565533222111 1 111222334445555665554 588888888888999999999999999999
Q ss_pred hhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHH
Q psy15226 160 DILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASV 239 (362)
Q Consensus 160 dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~ 239 (362)
||+|||+.+..+.....+..+........ ....+........+..+.....+.......|..| +.|+++.++.+.
T Consensus 255 ~r~g~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~ 329 (377)
T PRK11102 255 RRVGALNMLRFGLWIQFIMGIWLVVSALL----DLGFWALVVGVAAFVGCVSMISSNAMAVILDEFP-HMAGTASSLAGT 329 (377)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc-ccchHHHHHHHH
Confidence 99999998888776554433332221100 1112222222222222222222223356677766 789999988766
Q ss_pred HH-HHHHHHHHHHH
Q psy15226 240 AL-AFGSFITTKFH 252 (362)
Q Consensus 240 ~~-~ig~~~~~~~~ 252 (362)
.. .+|..+++.+.
T Consensus 330 ~~~~~g~~~g~~~~ 343 (377)
T PRK11102 330 LRFGIGAIVGALLS 343 (377)
T ss_pred HHHHHHHHHHHHHH
Confidence 54 45666666554
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.8e-12 Score=120.13 Aligned_cols=165 Identities=19% Similarity=0.160 Sum_probs=111.6
Q ss_pred hHHHHHHhHHHHhhhcCCCCCch-hHH-----HHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHH
Q psy15226 115 GITSMITYSSTLLPKLDNAYFGP-DQC-----ILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLY 188 (362)
Q Consensus 115 ~~~~~~~~~~~~~~~~g~~~~~~-~~~-----~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~ 188 (362)
.+..+....|.+.++++.+.++. .+. .+...++..+++++.|+++||+|||+++..+.++++++.+++++
T Consensus 31 d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~---- 106 (490)
T PRK10642 31 DFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGL---- 106 (490)
T ss_pred HHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHh----
Confidence 34555566676666654332221 221 35556788999999999999999999999999999999988877
Q ss_pred hcCCCCcch-------HHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHH-----
Q psy15226 189 QGELPNFQY-------IPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILIT----- 256 (362)
Q Consensus 189 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~----- 256 (362)
.++... ..++..++.+.+.++..+...++++|.+|+++||...++......+|..+++.+...+.
T Consensus 107 ---~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~ 183 (490)
T PRK10642 107 ---IPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGE 183 (490)
T ss_pred ---cccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 112111 12333444444444444555589999999999999999988777777777776554432
Q ss_pred ---HhhchhHHHHHHHHhhHhHHhhhheeeccCC
Q psy15226 257 ---KSLGQHVIFFIYSSVHFCSVVFNYFYLMETK 287 (362)
Q Consensus 257 ---~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~ 287 (362)
.+.|||+.|++.+.+.+++ ++.....||+.
T Consensus 184 ~~~~~~gWR~~f~i~~~~~l~~-~~~~~~~~esp 216 (490)
T PRK10642 184 ANFLDWGWRIPFFIALPLGIIG-LYLRHALEETP 216 (490)
T ss_pred HHhcCccHHHHHHHHHHHHHHH-HHHHHcCCCCh
Confidence 2579999998866555544 33335567753
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.5e-13 Score=120.03 Aligned_cols=230 Identities=13% Similarity=0.013 Sum_probs=135.1
Q ss_pred chhhHHHHhhhhhhhHHHHHHHHHHHHHHHHHhh-ccCCChHHHHhcCCHHHHHHHHHhHcCCcccHHHHHHHHHHHHhh
Q psy15226 2 VGTLAILLIGNHVSYNSLNIALSILPVIFFILFS-FVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQE 80 (362)
Q Consensus 2 ~G~~~~~~l~~~~~Wr~~f~~~~~~~~~~~~~~~-~lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (362)
+|+.++..+.. .+||..|++.++..++..+... ++||+++ +++ + +++
T Consensus 147 igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~----~~~-~---------------~~~----------- 194 (395)
T PRK10054 147 VGPPLGTLLVM-QSINLPFWLAAICSAFPLVFIQIWVQRSEK----AIA-T---------------ETG----------- 194 (395)
T ss_pred HHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHHHHhcccc----ccc-c---------------chh-----------
Confidence 34555555543 5899999998888777654433 3565431 000 0 000
Q ss_pred ccccccchhhhccCcchhHHHHHHHHHHHHHhhhhHHHHHHhHHHHh---hhcCCCCCchhHHHHHHHHHHHHHHHHHHH
Q psy15226 81 DLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLL---PKLDNAYFGPDQCILVFMIIMFLSNFLQAP 157 (362)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 157 (362)
+..+.++.+++|..+...+..++.... ......+.+.+. .+.+.+....+.......+.........|+
T Consensus 195 ---~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~ 266 (395)
T PRK10054 195 ---SVWSPSVLLQDKALLWFTCSGFLASFV-----SGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGR 266 (395)
T ss_pred ---hhhhhhhhccCceehHHHHHHHHHHHH-----HHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHH
Confidence 001124556655444333332222221 112222333333 223444333445555555666666778899
Q ss_pred HhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHH
Q psy15226 158 LMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCA 237 (362)
Q Consensus 158 l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~ 237 (362)
+.||.++|+.+..+....+++...+.. ..++.+...+....++.+.....|...+.+.+..|++.|+++.+..
T Consensus 267 ~~~~~~~~~~l~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~ 339 (395)
T PRK10054 267 RLNAANIRPLMTAGTLCFVIGLVGFIF-------SGNSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQ 339 (395)
T ss_pred HHccCCchhHHHHHHHHHHHHHHHHHH-------cchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHH
Confidence 999999999888887777776655543 1122222333333444443333345457888999999999998865
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhHhHHhhh
Q psy15226 238 SVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFN 279 (362)
Q Consensus 238 ~~~~~ig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~ 279 (362)
+ ...+|..++|.+.|.+.++.|....|++.++...+..++.
T Consensus 340 ~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~ 380 (395)
T PRK10054 340 S-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLM 380 (395)
T ss_pred H-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHH
Confidence 4 6778999999999999999998877777666655554444
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.5e-13 Score=121.16 Aligned_cols=166 Identities=13% Similarity=-0.008 Sum_probs=120.2
Q ss_pred HHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcc
Q psy15226 117 TSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQ 196 (362)
Q Consensus 117 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (362)
.......|.+.++.+.+..+.++..+...++..+++++.|+++||+|||+++..+..+.+++...+...... ..++.
T Consensus 34 ~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~ 110 (417)
T PRK10489 34 GLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFL---PEPSL 110 (417)
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHc---CCCcH
Confidence 455667788888887787888999999999999999999999999999999998877777666554321111 11222
Q ss_pred hHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhHhHH
Q psy15226 197 YIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSV 276 (362)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~ 276 (362)
+.......+.+.+.....+...+++.|..|+++|+++.++.+....+|..+++.+.+.+.+..+|++.+.+.++..++..
T Consensus 111 ~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~ 190 (417)
T PRK10489 111 LAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITL 190 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 22233333333333222233347889999999999999999999999999999999999988899988887776666554
Q ss_pred hhhheeeccC
Q psy15226 277 VFNYFYLMET 286 (362)
Q Consensus 277 ~~~~~~~~e~ 286 (362)
+.. +..|++
T Consensus 191 ~~~-~~l~~~ 199 (417)
T PRK10489 191 LPL-LRLPAL 199 (417)
T ss_pred HHH-HhCCCC
Confidence 443 455654
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.50 E-value=6e-13 Score=118.72 Aligned_cols=165 Identities=13% Similarity=0.063 Sum_probs=117.5
Q ss_pred hhHHHHHHhHHH-HhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCC
Q psy15226 114 GGITSMITYSST-LLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGEL 192 (362)
Q Consensus 114 ~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (362)
........+.|. +.++.|.+..+.++..+...++..++.++.|+++||+|||+.+..+.++.+++.+.+.. .
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~-------~ 87 (366)
T TIGR00886 15 SVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGL-------A 87 (366)
T ss_pred HHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHH-------H
Confidence 344667778885 66777999889999999999999999999999999999999999999988888877665 1
Q ss_pred CCcchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHh----------hchh
Q psy15226 193 PNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKS----------LGQH 262 (362)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~----------~g~~ 262 (362)
..+.+..++...+.+.+..... ....+++|.+|+++|+.+.++......+|..+++.+.+.+... .+|+
T Consensus 88 ~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~ 166 (366)
T TIGR00886 88 VQSYSVLLLLRLFIGIAGGSFA-SCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWG 166 (366)
T ss_pred hhhHHHHHHHHHHHHHhchhhH-hHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccccc
Confidence 1022333333333333322233 3347889999999999999999888888888777777666542 3788
Q ss_pred HHH-HHHHHhhHhHHhhhheeeccC
Q psy15226 263 VIF-FIYSSVHFCSVVFNYFYLMET 286 (362)
Q Consensus 263 ~~~-~~~~~~~~i~~~~~~~~~~e~ 286 (362)
+.+ ...+.+..+..++.....+|+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (366)
T TIGR00886 167 WAFVIVPAGILLLPALLIFFVGADT 191 (366)
T ss_pred chhHHHHHHHHHHHHHHHHHhcccC
Confidence 888 443444444444444445554
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.6e-13 Score=124.45 Aligned_cols=163 Identities=17% Similarity=0.137 Sum_probs=118.5
Q ss_pred HHHhHHHHhhhcCCC--------CCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhc
Q psy15226 119 MITYSSTLLPKLDNA--------YFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQG 190 (362)
Q Consensus 119 ~~~~~~~~~~~~g~~--------~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (362)
.....|....+.+.+ ..+.++..+...++..+++++.|+++||+|||+++..+.++..++.++....
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~----- 121 (481)
T TIGR00879 47 IGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLA----- 121 (481)
T ss_pred hhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHh-----
Confidence 344445555555444 6778899999999999999999999999999999999988888887776441
Q ss_pred CCCCcchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHH---HHHHHhhchhHHHHH
Q psy15226 191 ELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFH---ILITKSLGQHVIFFI 267 (362)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~---~~~~~~~g~~~~~~~ 267 (362)
......+..++...+.+.+.....+....+++|.+|+++|+.+.++.+....+|..+++.+. +...+..+|++.|++
T Consensus 122 ~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~ 201 (481)
T TIGR00879 122 AFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGL 201 (481)
T ss_pred ccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHH
Confidence 01111223444444444444333445558999999999999999999999999999999988 555566799999988
Q ss_pred HHHhhHhHHhhhheeeccCC
Q psy15226 268 YSSVHFCSVVFNYFYLMETK 287 (362)
Q Consensus 268 ~~~~~~i~~~~~~~~~~e~~ 287 (362)
.+...++.. +..+++||+.
T Consensus 202 ~~~~~~~~~-~~~~~l~~~~ 220 (481)
T TIGR00879 202 QLIPAGLLF-LGLFFLPESP 220 (481)
T ss_pred HHHHHHHHH-HHHhcCCCCh
Confidence 665555543 3445677753
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.2e-12 Score=110.10 Aligned_cols=143 Identities=15% Similarity=0.081 Sum_probs=101.8
Q ss_pred HHHHHHhHHHHhhh---cCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCC
Q psy15226 116 ITSMITYSSTLLPK---LDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGEL 192 (362)
Q Consensus 116 ~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (362)
-.....|.+.++++ .|.++.+.+...+....+..+|.++++++.||+|+|+.+..+..+..++.++... .
T Consensus 156 e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~-------~ 228 (310)
T TIGR01272 156 EVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAAL-------T 228 (310)
T ss_pred HHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH-------c
Confidence 35667788888864 3788888889999999999999999999999999999887777766666544333 1
Q ss_pred CCcchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHH
Q psy15226 193 PNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYS 269 (362)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~~~~ 269 (362)
+ . ........+.+.+.....|...+...+.+|++ .+++.++. ..+.+|+++.|.+.|.+.|..|.+.++++..
T Consensus 229 ~-~-~~~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~ 301 (310)
T TIGR01272 229 H-G-YVAMWFVLALGLFNSIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPV 301 (310)
T ss_pred C-C-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHH
Confidence 1 1 22222233333333444455557777877754 45666664 5678999999999999999989887776433
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=3e-12 Score=115.15 Aligned_cols=182 Identities=11% Similarity=-0.011 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHhHHHHhh-hcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHH
Q psy15226 100 AFTLVMAASLFQRLGGITSMITYSSTLLP-KLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLL 178 (362)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~ 178 (362)
+.+......+...+...+.+....+.+.+ ++|++..+.++..++..+...++.+..|++.||+|.|+++..+.++.++.
T Consensus 34 r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~ 113 (462)
T PRK15034 34 RNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIP 113 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 34444444444444444555555566555 67999899999999999999999999999999999999999998888887
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHH--
Q psy15226 179 TFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILIT-- 256 (362)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~-- 256 (362)
.+..++.. . +..++....++...+.+.+...+ +.....+++.+|+++||++.|+....+++|..+++.+.+.+.
T Consensus 114 ~~~~~~a~--~-~~~~s~~~lli~r~l~Gigg~~f-~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~ 189 (462)
T PRK15034 114 CVWLGIAV--Q-NPNTPFGIFIVIALLCGFAGANF-ASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFV 189 (462)
T ss_pred HHHHHHHH--c-ccCCCHHHHHHHHHHHHHHHHhH-HHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 77665410 0 01123333333333333332333 344478999999999999999997777777776666655433
Q ss_pred ---H-------------hhchhHHHHHHHHhhHhHHhhhheeecc
Q psy15226 257 ---K-------------SLGQHVIFFIYSSVHFCSVVFNYFYLME 285 (362)
Q Consensus 257 ---~-------------~~g~~~~~~~~~~~~~i~~~~~~~~~~e 285 (362)
+ ..+++.+.++...+.++..++.+++.++
T Consensus 190 ~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~ 234 (462)
T PRK15034 190 PVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMND 234 (462)
T ss_pred HHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 2 2336666667777666666666555554
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.50 E-value=1e-12 Score=120.84 Aligned_cols=156 Identities=15% Similarity=0.091 Sum_probs=121.3
Q ss_pred hHHHHHHhHHHHhhh---cCCCCCchhHHHHHHHHHHHHHHHHHHHHhhh-cCCchhhhhhhHhHHHHHHHHHHHHHHhc
Q psy15226 115 GITSMITYSSTLLPK---LDNAYFGPDQCILVFMIIMFLSNFLQAPLMDI-LGRKPLSCFSAALGCLLTFSTGLFYLYQG 190 (362)
Q Consensus 115 ~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~grr~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (362)
+++....++|.++++ .|.+..+++.......++..++++++|+++|| +|||+++..+..+.+++.+.+++
T Consensus 25 ~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~------ 98 (475)
T TIGR00924 25 SYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAM------ 98 (475)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHh------
Confidence 457778888888765 68888899999999999999999999999999 89999999999999988877665
Q ss_pred CCCCcchHHHHHHHHHHHHhhcccccchhhcccCCCcch---hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHH
Q psy15226 191 ELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINV---RCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFI 267 (362)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~---r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~~ 267 (362)
..+.........+.+.+.+...+...++++|.+|++. |+++.++.+...++|..++|.+.+.+.++.||+..|.+
T Consensus 99 --~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~ 176 (475)
T TIGR00924 99 --SIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNL 176 (475)
T ss_pred --cccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence 1122222333333333323344555578899998754 88899999999999999999999999998999999988
Q ss_pred HHHhhHhHHhh
Q psy15226 268 YSSVHFCSVVF 278 (362)
Q Consensus 268 ~~~~~~i~~~~ 278 (362)
.++..+++.+.
T Consensus 177 ~~~~~~~~~l~ 187 (475)
T TIGR00924 177 AAVGMVIGLLT 187 (475)
T ss_pred HHHHHHHHHHH
Confidence 77655555333
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.2e-13 Score=123.65 Aligned_cols=161 Identities=16% Similarity=0.092 Sum_probs=121.7
Q ss_pred HHHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCc
Q psy15226 116 ITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNF 195 (362)
Q Consensus 116 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (362)
.+......|.+.++.|.+..+.++..+...++..++.++.|+++||+|||+++..+..+.+++.+.+.+. ++
T Consensus 19 ~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~--------~~ 90 (377)
T TIGR00890 19 VYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIA--------DS 90 (377)
T ss_pred HhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHH--------HH
Confidence 3556677888888899998999999999999999999999999999999999999998888888776651 12
Q ss_pred chHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhHhH
Q psy15226 196 QYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCS 275 (362)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~ 275 (362)
.+...+...+.+.+.....+.....+.|.+| ++|+++.++......+|..+++.+.+.+.+..||++.|.+.+++.++.
T Consensus 91 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 169 (377)
T TIGR00890 91 LAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLV 169 (377)
T ss_pred HHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 3333333333333332222233356777776 579999999999989998887777777778889999999888887776
Q ss_pred Hhhhheeecc
Q psy15226 276 VVFNYFYLME 285 (362)
Q Consensus 276 ~~~~~~~~~e 285 (362)
.+..+++.++
T Consensus 170 ~~~~~~~~~~ 179 (377)
T TIGR00890 170 IVLGAFLIGY 179 (377)
T ss_pred HHHHHHheec
Confidence 6665555544
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1e-12 Score=118.76 Aligned_cols=160 Identities=14% Similarity=-0.029 Sum_probs=115.0
Q ss_pred HHHHHHhHHHHh-hhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCC
Q psy15226 116 ITSMITYSSTLL-PKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPN 194 (362)
Q Consensus 116 ~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (362)
.......+|.++ ++.|.+..+.++..+...++..+++++.|+++||+|||+++..+.++.+++.+.+............
T Consensus 31 ~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (399)
T PRK05122 31 IGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVL 110 (399)
T ss_pred HHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchh
Confidence 455566677655 5569898899999999999999999999999999999999999988877766554432111000000
Q ss_pred cchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhHh
Q psy15226 195 FQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFC 274 (362)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i 274 (362)
.....++...+.+.+.....+....++.|..|+++|+++.++......+|..+++.+.+.+.+..||+..+.+..++.++
T Consensus 111 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~ 190 (399)
T PRK05122 111 SLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALL 190 (399)
T ss_pred HHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 11122333334444433333444477889999999999999988888899999999999999999999877766555444
Q ss_pred H
Q psy15226 275 S 275 (362)
Q Consensus 275 ~ 275 (362)
.
T Consensus 191 ~ 191 (399)
T PRK05122 191 G 191 (399)
T ss_pred H
Confidence 4
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.7e-12 Score=113.04 Aligned_cols=186 Identities=12% Similarity=0.092 Sum_probs=128.4
Q ss_pred hhhhccCcchhHHHHHHHHHHHHHhhhhHHHHHHhHHHHhhhcC-CCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCch
Q psy15226 88 YLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLD-NAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKP 166 (362)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~ 166 (362)
..+++|+|+...-++.++.... .......|.+.++++.| .+....+...++..+..++.-...+++..|+|.|+
T Consensus 200 ~~~llk~~~~~~Fll~~~l~~~-----~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ 274 (400)
T PF03825_consen 200 ALKLLKNPRFLVFLLAAFLIGI-----SHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKW 274 (400)
T ss_pred HHHHhcCccHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 3467887654433333332222 23456677788888887 66556666777888889999999999999999999
Q ss_pred hhhhhhHhHHHHHHHHHHHHHHhcCCCCcchHHHHHH----HHHHHHh-hcccccchhhcccCCCcchhhhhhHHHHHH-
Q psy15226 167 LSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITT----LLYAASY-YGIGCLPNILVSELFPINVRCQASSCASVA- 240 (362)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~- 240 (362)
++.++.+..++=..+++. ..++.+...... .+.+..+ ....+. ..++.+..|++.|+++.++++..
T Consensus 275 ll~~a~~~~~vR~~l~a~-------~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~-~~yi~~~~p~~~~at~Q~l~~~~~ 346 (400)
T PF03825_consen 275 LLLLALVAYAVRWLLYAY-------FSDPWPFIVALQLLGQLLHGLTFGLFHAAS-VRYIDRIAPPELRATAQGLYSALS 346 (400)
T ss_pred HHHHHHHHHHHHHHHHHH-------hcCCcHHHHHHHHHHHhhhhHHHHHHHHHH-HHHHHHhCCccchHHHHHHHHHHH
Confidence 999999999888877765 112323222222 2355555 333333 48999999999999999998765
Q ss_pred HHHHHHHHHHHHHHHHHhhchhH------HHHHHHHhhHhHHhhhheeeccC
Q psy15226 241 LAFGSFITTKFHILITKSLGQHV------IFFIYSSVHFCSVVFNYFYLMET 286 (362)
Q Consensus 241 ~~ig~~~~~~~~~~~~~~~g~~~------~~~~~~~~~~i~~~~~~~~~~e~ 286 (362)
.++|..++..++|++.++.|.+. .+.+.+++.++..++.+++.||+
T Consensus 347 ~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~ 398 (400)
T PF03825_consen 347 FGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKPK 398 (400)
T ss_pred hhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 68999999999999999877553 34455555555555555555554
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.3e-12 Score=133.24 Aligned_cols=242 Identities=14% Similarity=-0.006 Sum_probs=146.0
Q ss_pred chhhHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhccCCChHHHHhcCCHHHHHHHHHhHcCCcccHHHHHHHHHHHHhhc
Q psy15226 2 VGTLAILLIGNHVSYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQED 81 (362)
Q Consensus 2 ~G~~~~~~l~~~~~Wr~~f~~~~~~~~~~~~~~~~lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (362)
+|+++++++....+||+.|+..++..++.+++.+++|+++. .+.+.+. ... ...
T Consensus 159 igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~----------~~~-~~~------------ 212 (1140)
T PRK06814 159 LGTIIGGLATISGNFVILVALLMGIAVLGWLASLFIPKTGN---AAPDLKI----------DRN-IIR------------ 212 (1140)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhCCCCCC---CCCCCee----------ccc-hHH------------
Confidence 57777777777789999996666666666666666777652 0000000 000 000
Q ss_pred cccccchhhhccCcchhHHHHHHHHHHHHHhhhhHHHHHHhHHHHhhhc-CCCCCchhHHHHHHHHHHHHHHHHHHHHhh
Q psy15226 82 LKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKL-DNAYFGPDQCILVFMIIMFLSNFLQAPLMD 160 (362)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d 160 (362)
+....++.+.+++..+...+......+ .......++|.++++. |.+....++..+..+++.++++++.|+++|
T Consensus 213 -~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~ 286 (1140)
T PRK06814 213 -STITLLKYAKADKRIWLAILGISWFWL-----VGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSE 286 (1140)
T ss_pred -HHHHHHHHHhcCchHHHHHHHHHHHHH-----HHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 011235556665443332222222111 1244556788888764 888788889999999999999999999999
Q ss_pred hcCCchhhhhhhHhHHHHHHHHHHHHHHh-c-----------CCCCcchHHHHHHHHHHHHhhcccccchhhcccCCCcc
Q psy15226 161 ILGRKPLSCFSAALGCLLTFSTGLFYLYQ-G-----------ELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPIN 228 (362)
Q Consensus 161 r~grr~~~~~~~~~~~~~~~~~~~~~~~~-~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 228 (362)
+.++++.+..+.++.+++.+.+.+..... . ....+.+...+..++++.+.....+...+++.+..|++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~ 366 (1140)
T PRK06814 287 GRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPA 366 (1140)
T ss_pred CceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcc
Confidence 88877766655555554444332210000 0 00122333333344444443333333458899999999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHH-hhchhHHHHHHHHhhHhH
Q psy15226 229 VRCQASSCASVALAFGSFITTKFHILITK-SLGQHVIFFIYSSVHFCS 275 (362)
Q Consensus 229 ~r~~~~~~~~~~~~ig~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~i~ 275 (362)
.||+++|+.+++..++..+++.+.+.+.+ ..+....+++.+.+.++.
T Consensus 367 ~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~ 414 (1140)
T PRK06814 367 HRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALANLIV 414 (1140)
T ss_pred cceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988874 345555555444443333
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.4e-13 Score=125.27 Aligned_cols=166 Identities=10% Similarity=-0.062 Sum_probs=122.0
Q ss_pred HHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcc
Q psy15226 117 TSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQ 196 (362)
Q Consensus 117 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (362)
..+....|.+.++.|.+..+.++..+.+.+++.++.++.|+++||+|||+++..+.++.++..+.++..... ..++.
T Consensus 46 ~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~---~~~~~ 122 (467)
T PRK09556 46 KNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGS---GSVSL 122 (467)
T ss_pred cChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhc---ccchH
Confidence 445566788889999998999999999999999999999999999999999988888877776665542110 11233
Q ss_pred hHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh---chhHHHHHHHHhhH
Q psy15226 197 YIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSL---GQHVIFFIYSSVHF 273 (362)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~ 273 (362)
...++...+.+.+.....+....+++|.+|+++||+++|+......+|.++++.+...+.+.. +|+..|.+.+++.+
T Consensus 123 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~ 202 (467)
T PRK09556 123 GLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIAL 202 (467)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHH
Confidence 344444444444443333455589999999999999999999999999999998887666643 58777777676666
Q ss_pred hHHhhhheeecc
Q psy15226 274 CSVVFNYFYLME 285 (362)
Q Consensus 274 i~~~~~~~~~~e 285 (362)
+..++.+++.++
T Consensus 203 ~~~i~~~~~~~~ 214 (467)
T PRK09556 203 IIGFIGLRYGSD 214 (467)
T ss_pred HHHHHHHHhCCC
Confidence 555554444443
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.4e-12 Score=113.39 Aligned_cols=137 Identities=12% Similarity=0.019 Sum_probs=96.0
Q ss_pred HHHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhc-CCchhhhhhhHhHHHHHHHHHHHHHHhcCCCC
Q psy15226 116 ITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDIL-GRKPLSCFSAALGCLLTFSTGLFYLYQGELPN 194 (362)
Q Consensus 116 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (362)
++....+.|.++++.|.+..+.+...+...++.+++.++.|+++||+ +||+.+..+..+.+++.+.+.. ...
T Consensus 213 ~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 285 (355)
T TIGR00896 213 YYSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLF-------APM 285 (355)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHH-------hhh
Confidence 45566788999888898878888899999999999999999999999 5666666666666666554443 111
Q ss_pred cchHHHHHHHHHHHHhhcccccchhhccc-CCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhch
Q psy15226 195 FQYIPYITTLLYAASYYGIGCLPNILVSE-LFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQ 261 (362)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e-~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g~ 261 (362)
.... ....+++.+.....+...+.+.+ ..+++.++...++.+....++..++|.+.|.+.++.|.
T Consensus 286 ~~~~--~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~ 351 (355)
T TIGR00896 286 HGLW--AWALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGN 351 (355)
T ss_pred hHHH--HHHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1111 12233333332333333344444 34566778899999999999999999999999998763
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.3e-12 Score=117.84 Aligned_cols=156 Identities=10% Similarity=-0.051 Sum_probs=109.4
Q ss_pred HHHHHhHHHHh-hhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCc
Q psy15226 117 TSMITYSSTLL-PKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNF 195 (362)
Q Consensus 117 ~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (362)
......+|.++ ++.|.+..+.++..+...++..+++++.|+++||+|||+++..+.+...++.+........+.....+
T Consensus 32 ~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (392)
T PRK12382 32 GLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFK 111 (392)
T ss_pred HHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHH
Confidence 44455666554 56799989999999999999999999999999999999999988877666554332211100000012
Q ss_pred chHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhh
Q psy15226 196 QYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVH 272 (362)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 272 (362)
....++...+.+.+.....+...+++.|.+|+++|++++++.......+..++|.+.+.+.+..||+..+.+..+..
T Consensus 112 ~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~ 188 (392)
T PRK12382 112 FALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLP 188 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHH
Confidence 22233333344433322233334678899999999999999998889999999999999888889987665544443
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.2e-12 Score=114.26 Aligned_cols=235 Identities=11% Similarity=0.023 Sum_probs=135.3
Q ss_pred chhhHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhccCCChHHHHhcCCHHHHHHHHHhHcCCcccHHHHHHHHHHHHhhc
Q psy15226 2 VGTLAILLIGNHVSYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQED 81 (362)
Q Consensus 2 ~G~~~~~~l~~~~~Wr~~f~~~~~~~~~~~~~~~~lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (362)
+|+.+++++... .|+..+.+.+...++..+..+.+||+|+.. +++.++ .....++..
T Consensus 139 ~Gp~lgG~l~~~-~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~--~~~~~~--------------~~~~~~~~~------ 195 (393)
T PRK11195 139 LGTVLGGALADP-HAEAALAVCALIYLLAALFNLFIPRLGARR--PGQSWN--------------PIALLRDFF------ 195 (393)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCcccc--cccCCC--------------HHHHHHHHH------
Confidence 466666666554 488887777766555555556689876321 000000 000011110
Q ss_pred cccccchhhhccCcchhHHHHHHHHHHHHHhhhhHHHHHHhHHHHhhh-cCCCCCchhHHHHHHHHHHHHHHHHHHHHhh
Q psy15226 82 LKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPK-LDNAYFGPDQCILVFMIIMFLSNFLQAPLMD 160 (362)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d 160 (362)
...+.+++++..+............ ........|.+.++ .|.++.+.+......+++.+++++..+++.|
T Consensus 196 ----~~~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~ 266 (393)
T PRK11195 196 ----HACRVLWRDKLGRFSLAGTTLFWGA-----GATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVT 266 (393)
T ss_pred ----HHHHHHHhCchhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1124456654433322222211111 12233334444444 4888888889999999999999999999999
Q ss_pred hcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHh-hcccccchhhcccCCCcch-hhhhhHHHH
Q psy15226 161 ILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASY-YGIGCLPNILVSELFPINV-RCQASSCAS 238 (362)
Q Consensus 161 r~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~~p~~~-r~~~~~~~~ 238 (362)
|.++|+.+..+.. .++....+.. .++.+.......+.+.+. ....+. .+.+.|..|++. +|++.++.+
T Consensus 267 ~~~~~~~~~~g~~-~~~~~~~~~~--------~~~~~~~~~~~~~~G~~~g~~~~~~-~~~~q~~~~~~~~~g~~~a~~~ 336 (393)
T PRK11195 267 LETVLRVLPAGIL-MGLVVLLMAL--------QHSLLPAYPLLILIGALGGFFVVPM-NALLQHRGHVLVGAGHSIAVQN 336 (393)
T ss_pred CCcccchHHHHHH-HHHHHHHHHH--------HhHHHHHHHHHHHHHHhhhhhhhhH-HHHHHhhCcccccchhHHHHHh
Confidence 9998887766643 3333222222 112222233333344333 323333 366778766654 799999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhHhHHhhh
Q psy15226 239 VALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFN 279 (362)
Q Consensus 239 ~~~~ig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~ 279 (362)
...+++..++..+.+.+ +..|-+..+.+.+...+++..+.
T Consensus 337 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 376 (393)
T PRK11195 337 FNENLAMLLMLGLYSLL-VKLGVPVVAVIVGFGLLVALAMA 376 (393)
T ss_pred HHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999998855 66787777766655555554444
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.1e-12 Score=116.70 Aligned_cols=165 Identities=15% Similarity=0.102 Sum_probs=108.8
Q ss_pred hhHHHHHHhHHHHhhhcC---CCCCchh---HHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHH
Q psy15226 114 GGITSMITYSSTLLPKLD---NAYFGPD---QCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYL 187 (362)
Q Consensus 114 ~~~~~~~~~~~~~~~~~g---~~~~~~~---~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~ 187 (362)
.....+....|.+.++.+ .+..+.. .......++..++++++|+++||+|||+++..+..+.+++.+.+++
T Consensus 36 ~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~--- 112 (432)
T PRK10406 36 FDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIAC--- 112 (432)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhh---
Confidence 344556666677766654 3322222 2334445566699999999999999999999999999998888766
Q ss_pred HhcCCCCcc-------hHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHH----
Q psy15226 188 YQGELPNFQ-------YIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILIT---- 256 (362)
Q Consensus 188 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~---- 256 (362)
.++.. ...++...+.+.+.++..+...++++|.+|+++|+.+.++.......|..+++.+...+.
T Consensus 113 ----~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~ 188 (432)
T PRK10406 113 ----LPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLE 188 (432)
T ss_pred ----cCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 11111 123333334444434445555689999999999999998887777777777766554433
Q ss_pred ----HhhchhHHHHHHHHhhHhHHhhhheeeccC
Q psy15226 257 ----KSLGQHVIFFIYSSVHFCSVVFNYFYLMET 286 (362)
Q Consensus 257 ----~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~ 286 (362)
+..|||.+|++.++..++.. ......||+
T Consensus 189 ~~~~~~~gWr~~F~i~~~~~ll~~-~~~~~~~e~ 221 (432)
T PRK10406 189 DAELREWGWRIPFALGAVLAVVAL-WLRRQLDET 221 (432)
T ss_pred HHHHhccchHHHHHHHHHHHHHHH-HHHhcCCCC
Confidence 25799999988776665543 222345554
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.48 E-value=3e-13 Score=119.88 Aligned_cols=213 Identities=17% Similarity=0.142 Sum_probs=130.1
Q ss_pred chhhHHHHhhhhhhhHHHHHHHHHHHHHHHHHh-hccCCChHHHHhcCCHHHHHHHHHhHcCCcccHHHHHHHHHHHHhh
Q psy15226 2 VGTLAILLIGNHVSYNSLNIALSILPVIFFILF-SFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQE 80 (362)
Q Consensus 2 ~G~~~~~~l~~~~~Wr~~f~~~~~~~~~~~~~~-~~lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (362)
+|+.++..+....+||+.|++.+++.++..++. .+++++|+....+.+.++ . .+
T Consensus 136 ~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~--------------~-----------~~ 190 (352)
T PF07690_consen 136 LGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLPEPPPPRERESPKES--------------E-----------SK 190 (352)
T ss_dssp HHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC---STTTT--SSTTT--------------T-------------
T ss_pred cccchhhhhhhccccccccccccchhhhhhhhHhhhhhhccccccccccccc--------------c-----------cc
Confidence 355555555666799999999999999887743 345555431100000000 0 00
Q ss_pred cccccc-chhhhccCcchhHHHHHHHHHHHHHhhhhHHHHHHhHHHH-hhhcCCC-CCchhHHHHHHHHHHHHHHHHHHH
Q psy15226 81 DLKSKT-GYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTL-LPKLDNA-YFGPDQCILVFMIIMFLSNFLQAP 157 (362)
Q Consensus 81 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~g~ 157 (362)
++.+.. .++..++++..+ ..+....... ........+.|.+ .+..|.+ ..+.+.......+...++.++.|+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (352)
T PF07690_consen 191 KPKPLKPGFKSLFKNPVLW-ILLIAFFLFF----FVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGR 265 (352)
T ss_dssp HHHCCCH-CTHHHHHHCCH-HHHHHHHHHH----HHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccchhh-hhhhhhhHHH----HHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001111 245555543332 1222222221 1235577888887 4555888 567777888899999999999999
Q ss_pred HhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHH
Q psy15226 158 LMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCA 237 (362)
Q Consensus 158 l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~ 237 (362)
++||+++|+..........+..+.+..... .++.........+.+.+.....+....++.|..|+++||++.|+.
T Consensus 266 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~ 340 (352)
T PF07690_consen 266 LSDRFGRRRRLLIAILLLILGALGLLLLPF-----SSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLF 340 (352)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHCCSHH-----HCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHH
T ss_pred HHHHcCcHHHHHHHHHHHHHHHHHHHHHHH-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 999999988777776666666555433111 112223333344444443444555568999999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy15226 238 SVALAFGSFITT 249 (362)
Q Consensus 238 ~~~~~ig~~~~~ 249 (362)
+...++++.++|
T Consensus 341 ~~~~~~~~~igP 352 (352)
T PF07690_consen 341 NSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC
Confidence 999999999887
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.6e-12 Score=116.98 Aligned_cols=150 Identities=11% Similarity=-0.060 Sum_probs=119.0
Q ss_pred HHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcc
Q psy15226 117 TSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQ 196 (362)
Q Consensus 117 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (362)
......+|.+.+++|.+..+.++..+...++..+++++.|+++||+|||+++..+..+.+++.+.+++ .++.
T Consensus 26 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~--------a~~~ 97 (393)
T PRK09705 26 TSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMREL--------YPQS 97 (393)
T ss_pred hccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHH--------Ccch
Confidence 45667789999999999899999999999999999999999999999999999999999999998877 2233
Q ss_pred hHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh-chhHHHHHHHHhhHhH
Q psy15226 197 YIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSL-GQHVIFFIYSSVHFCS 275 (362)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~i~ 275 (362)
...+....+.+.+.....+....++.|.+| ++|+.+++........|..+++.+.+.+.++. +|+..+.+.++..++.
T Consensus 98 ~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~ 176 (393)
T PRK09705 98 ALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVA 176 (393)
T ss_pred HHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 344444555555542223333477888887 77999999999999999999999998888875 7998776655554433
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.4e-12 Score=113.89 Aligned_cols=157 Identities=17% Similarity=0.172 Sum_probs=125.9
Q ss_pred hHHHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCC
Q psy15226 115 GITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPN 194 (362)
Q Consensus 115 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (362)
+........|.+.++.|.+..+.++......++..++.++.|+++||+|||+.+..+.....++.+.... .+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~--------~~ 85 (352)
T cd06174 14 DRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAF--------AS 85 (352)
T ss_pred hhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHH--------hc
Confidence 3456677788888888998888999999999999999999999999999999999999988888887665 12
Q ss_pred cchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhHh
Q psy15226 195 FQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFC 274 (362)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i 274 (362)
+.+.......+.+.+.....+...++..|.+|+++|+++.++.+....+|..+++.+.+.+.+..+|+..+.+.+...++
T Consensus 86 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (352)
T cd06174 86 SLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLL 165 (352)
T ss_pred cHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 33333443444444333334555589999999999999999999999999999999999999988999888887777666
Q ss_pred HHhhh
Q psy15226 275 SVVFN 279 (362)
Q Consensus 275 ~~~~~ 279 (362)
..+..
T Consensus 166 ~~~~~ 170 (352)
T cd06174 166 LALLL 170 (352)
T ss_pred HHHHH
Confidence 55443
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.3e-11 Score=112.39 Aligned_cols=178 Identities=18% Similarity=0.194 Sum_probs=127.0
Q ss_pred HHhhhhHHHHHHhHHHHhh-hcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCc--hhhhhhhHhHHHHHHHHHHHH
Q psy15226 110 FQRLGGITSMITYSSTLLP-KLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRK--PLSCFSAALGCLLTFSTGLFY 186 (362)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr--~~~~~~~~~~~~~~~~~~~~~ 186 (362)
+....+...+......+.+ +.|++..+.........+.+++|++++|++.||+|.| +++..+.....+..+.- .+.
T Consensus 291 ~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g-~~G 369 (477)
T PF11700_consen 291 FLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYG-LFG 369 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHH-HHH
Confidence 3333455666666666666 4599988888889999999999999999999999999 77666655553322221 111
Q ss_pred HHhc-CCCCcchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc-hhHH
Q psy15226 187 LYQG-ELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLG-QHVI 264 (362)
Q Consensus 187 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g-~~~~ 264 (362)
..+. ....+.+...+...+.+...++..+...++.+|+.|+++.+...|++...+...+.++|.+.+.+.+..| .|..
T Consensus 370 ~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g 449 (477)
T PF11700_consen 370 FWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYG 449 (477)
T ss_pred hhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhH
Confidence 1110 0122334434434444444366677788999999999999999999999999999999999999999887 7778
Q ss_pred HHHHHHhhHhHHhhhheeeccCCCC
Q psy15226 265 FFIYSSVHFCSVVFNYFYLMETKQK 289 (362)
Q Consensus 265 ~~~~~~~~~i~~~~~~~~~~e~~~~ 289 (362)
+....++.+++.++. ..++.+|++
T Consensus 450 ~~~l~~lf~~gl~ll-~~v~~~~g~ 473 (477)
T PF11700_consen 450 FLFLLVLFLIGLILL-FFVDVEKGR 473 (477)
T ss_pred HHHHHHHHHHHHHHH-hhccchhhh
Confidence 887788877776665 555554443
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.3e-12 Score=109.40 Aligned_cols=166 Identities=13% Similarity=0.039 Sum_probs=127.7
Q ss_pred HhhhhHHHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhc
Q psy15226 111 QRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQG 190 (362)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (362)
..++..+.+....+.+-++.|+|+.|..++..+..+.+.+..++.|.+.||+|.|++...+.++..+-.+..++.
T Consensus 25 v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a----- 99 (417)
T COG2223 25 VGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFA----- 99 (417)
T ss_pred HHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHH-----
Confidence 333344555556666667889999999999999999999999999999999999999999998888888777662
Q ss_pred CCCCcc-hHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc---hhHHHH
Q psy15226 191 ELPNFQ-YIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLG---QHVIFF 266 (362)
Q Consensus 191 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g---~~~~~~ 266 (362)
...+. +..+.+....+.+ ++.......++++.+|++++|.+.|+.. .+++|..+...+.+.+....| |+....
T Consensus 100 -~~~~~~~~ll~~gll~G~~-GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~ 176 (417)
T COG2223 100 -VTYPSTWQLLVIGLLLGLA-GASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAG 176 (417)
T ss_pred -ccCCchHHHHHHHHHHhcc-cceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 12222 2222222222222 3434455589999999999999999999 999999999999999999888 888888
Q ss_pred HHHHhhHhHHhhhheeec
Q psy15226 267 IYSSVHFCSVVFNYFYLM 284 (362)
Q Consensus 267 ~~~~~~~i~~~~~~~~~~ 284 (362)
+.....++..+..++...
T Consensus 177 i~~~~l~v~~v~~~~~~~ 194 (417)
T COG2223 177 IYVVALAIAAVLAWLGMN 194 (417)
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 888888887777766554
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.7e-12 Score=117.28 Aligned_cols=150 Identities=10% Similarity=0.001 Sum_probs=107.3
Q ss_pred HHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcc
Q psy15226 117 TSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQ 196 (362)
Q Consensus 117 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (362)
.....+.+.+.++.|.+..+.++..+...++..++.++.|+++||+|||+++..+..+.+++.+.+.... ....+.
T Consensus 30 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~----~~~~~~ 105 (402)
T TIGR00897 30 GLEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFG----LGHANY 105 (402)
T ss_pred hhHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHh----ccCccH
Confidence 3445567778888899989999999999999999999999999999999999998888887765442210 011122
Q ss_pred hHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHH-HHHHHHHHHHHHhhchhHHHHHHHH
Q psy15226 197 YIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGS-FITTKFHILITKSLGQHVIFFIYSS 270 (362)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~-~~~~~~~~~~~~~~g~~~~~~~~~~ 270 (362)
+.......+.+.+.....+.....+.|.+|+++|++++|+.+....+|. .+++.+.+.+.+..|++..++....
T Consensus 106 ~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~ 180 (402)
T TIGR00897 106 PLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALA 180 (402)
T ss_pred HHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 2323333333333322223333667888999999999999999999886 5788888888888886555444433
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.5e-12 Score=116.43 Aligned_cols=164 Identities=12% Similarity=0.060 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHhHHHHhhhcCCCCCchhHH-HHH-----HHHHHHHHHHHHHHHhhhcCCchhhhhhhH
Q psy15226 100 AFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQC-ILV-----FMIIMFLSNFLQAPLMDILGRKPLSCFSAA 173 (362)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~-----~~~~~~~~~~~~g~l~dr~grr~~~~~~~~ 173 (362)
+.........+........+....|.+.++.+.+..+.... .+. ..+...+++++.|+++||+|||+.++.+..
T Consensus 15 ~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~ 94 (434)
T PRK15075 15 RAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLS 94 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHH
Confidence 34445555555555566778888999989888775554322 222 123335788999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhcCCCCcch-------HHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHH
Q psy15226 174 LGCLLTFSTGLFYLYQGELPNFQY-------IPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSF 246 (362)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~ 246 (362)
+..++.+.+++ .++... ..++..++.+.+.....+....+++|.+|+++|++++++.....++|..
T Consensus 95 ~~~~~~~l~~~-------~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~ 167 (434)
T PRK15075 95 IMASGTLLIAF-------VPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVV 167 (434)
T ss_pred HHHHHHHHHHh-------CCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHH
Confidence 99888888766 111111 1233333434333222333348899999999999999998888888777
Q ss_pred HHHHHHHHH--------HHhhchhHHHHHHHH
Q psy15226 247 ITTKFHILI--------TKSLGQHVIFFIYSS 270 (362)
Q Consensus 247 ~~~~~~~~~--------~~~~g~~~~~~~~~~ 270 (362)
+++.+++.+ .+..||+++|++...
T Consensus 168 ~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~ 199 (434)
T PRK15075 168 FAALLGYLLNQWLSPAQMAEWGWRIPFLIGCL 199 (434)
T ss_pred HHHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence 777766654 246799998886443
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.45 E-value=9.3e-13 Score=117.07 Aligned_cols=208 Identities=10% Similarity=-0.027 Sum_probs=118.3
Q ss_pred hhhHHHHhhhhhh--------hHHHHHHHHHHHHHHHHHhhc-cCCChHHHHhcCCHHHHHHHHHhHcCCcccHHHHHHH
Q psy15226 3 GTLAILLIGNHVS--------YNSLNIALSILPVIFFILFSF-VPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNS 73 (362)
Q Consensus 3 G~~~~~~l~~~~~--------Wr~~f~~~~~~~~~~~~~~~~-lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~ 73 (362)
|+.++..+....+ ||..|++.+++.++..+..++ .||+++. .+.++. ..+
T Consensus 135 ~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~~~----~~~~~~-------------~~~---- 193 (356)
T TIGR00901 135 SGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLFLAKEPQED----ASVPKP-------------LTQ---- 193 (356)
T ss_pred HHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHHhccCCCcc----cccchh-------------HHH----
Confidence 4444444445567 999999999988876666554 5775320 000000 000
Q ss_pred HHHHHhhccccccchhhhccCcchhHHHHHHHHHHHHHhhhhHHHHHHhHHHHhhhcCCCCCchhHHHHHHH-HHHHHHH
Q psy15226 74 IMDKTQEDLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFM-IIMFLSN 152 (362)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~ 152 (362)
+.+.+++++++++..+ ..+......+... ..+.....+.|.++++.|++..+.+......+ +..+++.
T Consensus 194 ---------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~ 262 (356)
T TIGR00901 194 ---------AVLKPIREFFQRKNMI-QALLLLLLIVLYK-LGDSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGG 262 (356)
T ss_pred ---------HHHHHHHHHHHhcCch-HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHH
Confidence 0112344555543311 1222222222222 22355667778888878888666666666555 5778999
Q ss_pred HHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcC---CCCcchHHHHHHHHHHHHhhcccccchhhcccCCCcch
Q psy15226 153 FLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGE---LPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINV 229 (362)
Q Consensus 153 ~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~ 229 (362)
+++|++.||+|||+.+..+.++.++....+.+....... .....+.......+...+.....+...++..|.+|+++
T Consensus 263 ~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~ 342 (356)
T TIGR00901 263 LIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKF 342 (356)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCc
Confidence 999999999999998888777776665544321100000 00111222222323333333334445589999999999
Q ss_pred hhhhhHHHHHHHH
Q psy15226 230 RCQASSCASVALA 242 (362)
Q Consensus 230 r~~~~~~~~~~~~ 242 (362)
||+..|+.+...+
T Consensus 343 ~g~~~g~~~~~~~ 355 (356)
T TIGR00901 343 GATQMALLSSLSA 355 (356)
T ss_pred cHHHHHHHHHHHh
Confidence 9999999876653
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.6e-12 Score=131.35 Aligned_cols=161 Identities=12% Similarity=0.013 Sum_probs=106.9
Q ss_pred HHHHHhHHHHhhh-cCCCCC-chhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCC
Q psy15226 117 TSMITYSSTLLPK-LDNAYF-GPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPN 194 (362)
Q Consensus 117 ~~~~~~~~~~~~~-~g~~~~-~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (362)
.....++|.++.+ .|.+.. ..++..+...++.+++++++|+++||+++++.+.++.++.+++.+.+.. ..
T Consensus 249 ~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~--------~~ 320 (1146)
T PRK08633 249 QLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPT--------AP 320 (1146)
T ss_pred HHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHH--------hh
Confidence 3445566666654 488866 7788888899999999999999999999998888877777766665544 11
Q ss_pred cchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHH-hhchhHHHHHHHHhhH
Q psy15226 195 FQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITK-SLGQHVIFFIYSSVHF 273 (362)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~ 273 (362)
+.+..++..++++.+.....+...+++.+..|++.||+++|+.+++..+|..+++.+.+.+.. ..++...+.+.+.+.+
T Consensus 321 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 400 (1146)
T PRK08633 321 SLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTL 400 (1146)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 223333334444444322333345888999999999999999999999998888777665543 1234444555444444
Q ss_pred hHHhhhheeecc
Q psy15226 274 CSVVFNYFYLME 285 (362)
Q Consensus 274 i~~~~~~~~~~e 285 (362)
+..++.....|+
T Consensus 401 ~~~~~~~~~~~~ 412 (1146)
T PRK08633 401 IGTLYTLLLLPD 412 (1146)
T ss_pred HHHHHHHHHhHH
Confidence 443333333343
|
|
| >KOG2615|consensus | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.4e-12 Score=110.50 Aligned_cols=146 Identities=18% Similarity=0.130 Sum_probs=104.6
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHh-hcc
Q psy15226 135 FGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASY-YGI 213 (362)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 213 (362)
.-.+.+.+.+++.+++.++.+|.++||+|||+++.++.+..++...+.+. +... .......+.++. -+.
T Consensus 68 ~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~---------S~~F-~afv~aR~l~Gi~kgn 137 (451)
T KOG2615|consen 68 FYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWAL---------SRNF-AAFVLARFLGGIFKGN 137 (451)
T ss_pred hhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHH---------HHHH-HHHHHHHHhhhhccCc
Confidence 45678889999999999999999999999999999999999998777665 1222 222232333333 444
Q ss_pred cccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHH---hhchhHHHH---HHHHhhHhHHhhhheeeccCC
Q psy15226 214 GCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITK---SLGQHVIFF---IYSSVHFCSVVFNYFYLMETK 287 (362)
Q Consensus 214 ~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~---~~g~~~~~~---~~~~~~~i~~~~~~~~~~e~~ 287 (362)
..+..++++|+.++++|+.+++.++....+|-++||.++|++.. ..|....+. +..++.........+++|||-
T Consensus 138 l~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL 217 (451)
T KOG2615|consen 138 LSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETL 217 (451)
T ss_pred hHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 44445999999999999999999999999999999999999887 334322222 222222221334446789985
Q ss_pred CCC
Q psy15226 288 QKT 290 (362)
Q Consensus 288 ~~~ 290 (362)
+.+
T Consensus 218 ~~r 220 (451)
T KOG2615|consen 218 PLR 220 (451)
T ss_pred cch
Confidence 443
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.9e-12 Score=120.69 Aligned_cols=155 Identities=19% Similarity=0.245 Sum_probs=119.2
Q ss_pred HhHHHHhhhcCCC---CCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcch
Q psy15226 121 TYSSTLLPKLDNA---YFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQY 197 (362)
Q Consensus 121 ~~~~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (362)
.+.|.+.++++.+ ..+.++..+...++..+++++.|+++||+|||+++..+.++.+++.+..++ ..+.+
T Consensus 110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~--------~~~~~ 181 (505)
T TIGR00898 110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAF--------SPNYT 181 (505)
T ss_pred cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHH--------cccHH
Confidence 4557777888887 677889999999999999999999999999999999998888888777655 12333
Q ss_pred HHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhHhHHh
Q psy15226 198 IPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSVV 277 (362)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~ 277 (362)
..++...+.+.+..+..+...+++.|.+|+++|+.+.++......+|.++++.+...+.+ |++.+++.++..++..+
T Consensus 182 ~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~~i~~~~~~~ 258 (505)
T TIGR00898 182 VFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAVSLPTFLFFL 258 (505)
T ss_pred HHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHH
Confidence 333334444433344456666899999999999999999988888898888887755443 99888888877776655
Q ss_pred hhheeeccCC
Q psy15226 278 FNYFYLMETK 287 (362)
Q Consensus 278 ~~~~~~~e~~ 287 (362)
.. +++||+.
T Consensus 259 ~~-~~~~esp 267 (505)
T TIGR00898 259 LS-WFVPESP 267 (505)
T ss_pred HH-HhcCCCh
Confidence 54 6678863
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.8e-12 Score=113.34 Aligned_cols=156 Identities=8% Similarity=0.038 Sum_probs=115.0
Q ss_pred HHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcchH
Q psy15226 119 MITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYI 198 (362)
Q Consensus 119 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (362)
.....+...++.+.+..+.++..+.+.+...+..+++|+++||+|||++++.+..+.+++.+.+... . + .
T Consensus 22 ~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~-------~-~-~- 91 (393)
T PRK11195 22 LLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFG-------I-H-P- 91 (393)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHH-------H-H-H-
Confidence 3344455567778877778899999999999999999999999999999999998888777665440 1 1 1
Q ss_pred HHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhHhHHhh
Q psy15226 199 PYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSVVF 278 (362)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~ 278 (362)
+....+.+.+.....|...+++.|++|+++|+++.++.+....++..++|.++|.+.+.. |+..+.+.+.+.+++ ++
T Consensus 92 -~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~-~~~~~~i~~~~~~~~-~~ 168 (393)
T PRK11195 92 -LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPH-AEAALAVCALIYLLA-AL 168 (393)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-HH
Confidence 222333333335555666689999999999999999999999999999999999998753 665665555444434 33
Q ss_pred hheeeccCC
Q psy15226 279 NYFYLMETK 287 (362)
Q Consensus 279 ~~~~~~e~~ 287 (362)
..+.+||.+
T Consensus 169 ~~~~l~~~~ 177 (393)
T PRK11195 169 FNLFIPRLG 177 (393)
T ss_pred HHhcCCCCc
Confidence 335567643
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.42 E-value=9.6e-12 Score=115.10 Aligned_cols=168 Identities=17% Similarity=0.122 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHhhhhHHHHHHhHHHHh-hhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhh-cCCchhhhhhhHhHHHH
Q psy15226 101 FTLVMAASLFQRLGGITSMITYSSTLL-PKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDI-LGRKPLSCFSAALGCLL 178 (362)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~grr~~~~~~~~~~~~~ 178 (362)
+...+...+...+ +++.+..+++.++ ++.|++..++...............+++|+++|| +|||+.+..+.++.+++
T Consensus 23 ~~~~~~~~~~~~~-~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig 101 (500)
T PRK09584 23 FYLIFSIELWERF-GYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIG 101 (500)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 3333333333333 4566777888887 4568887777666666665556666789999999 59999999999988888
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhcccccchhhcccCCCcch--hhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy15226 179 TFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINV--RCQASSCASVALAFGSFITTKFHILIT 256 (362)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~--r~~~~~~~~~~~~ig~~~~~~~~~~~~ 256 (362)
...+.+ ..+......+...+.+.+.+...+...+++.|.+|++. |..+.++.+...++|+.++|.+.+++.
T Consensus 102 ~~l~~~-------~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~ 174 (500)
T PRK09584 102 YALVAW-------SGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLA 174 (500)
T ss_pred HHHHHH-------hcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 777655 11122222233333333333334454578999998643 456788889999999999999999999
Q ss_pred HhhchhHHHHHHHHhhHhHH
Q psy15226 257 KSLGQHVIFFIYSSVHFCSV 276 (362)
Q Consensus 257 ~~~g~~~~~~~~~~~~~i~~ 276 (362)
++.||++.|.+.++..+++.
T Consensus 175 ~~~g~~~~F~i~~i~~~i~~ 194 (500)
T PRK09584 175 AKYGWSVAFALSVVGMLITV 194 (500)
T ss_pred HhhCHHHHHHHHHHHHHHHH
Confidence 99999999988776544443
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.1e-11 Score=109.32 Aligned_cols=233 Identities=11% Similarity=0.001 Sum_probs=127.2
Q ss_pred chhhHHHHhhhhhhhHHHHHHHHHHHHHHHHH-hhccCCChHHHHhcCCHHHHHHHHHhHcCCcccHHHHHHHHHHHHhh
Q psy15226 2 VGTLAILLIGNHVSYNSLNIALSILPVIFFIL-FSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQE 80 (362)
Q Consensus 2 ~G~~~~~~l~~~~~Wr~~f~~~~~~~~~~~~~-~~~lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (362)
+|+++++.+.+..|||+.|++.++++++..+. .+.+||+++ .+++ + .+ .+
T Consensus 155 ~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~---~~~~-~------------~~-~~------------ 205 (413)
T PRK15403 155 IGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETVK---RGAV-P------------FS-AK------------ 205 (413)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCcc---ccCC-C------------CC-hH------------
Confidence 46666766667779999999999988887665 445898753 0000 0 00 00
Q ss_pred ccccccchhhhccCcchhHHHHHHHHHHHHHhhhhHHHHHHhHHHHhhhc-CCCCCchhHHHHHHHHHHHHHHHHHHHHh
Q psy15226 81 DLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKL-DNAYFGPDQCILVFMIIMFLSNFLQAPLM 159 (362)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 159 (362)
....++++++++|..+...+.. . ........+..+.|.++++. |.+..+.++.......+..+++.+.+.+.
T Consensus 206 --~~~~~~~~ll~~~~~~~~~l~~----~-~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~ 278 (413)
T PRK15403 206 --SVLRDFRNVFRNRLFLTGAATL----S-LSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFV 278 (413)
T ss_pred --HHHHHHHHHHcCHHHHHHHHHH----H-HHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0112345667764433322221 1 12222355666778888776 88877778877777888888888888776
Q ss_pred hhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHH
Q psy15226 160 DILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASV 239 (362)
Q Consensus 160 dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~ 239 (362)
++..+++..........++..++...... ..+.....+....+++.+.....+......-+ -....+|++.++.+.
T Consensus 279 ~~~~~~~~~~~~~~~~~ig~~l~~~~~~~---~~~~~~~~~~~~~l~~~G~~~~~p~~~~~al~-~~~~~~G~a~a~~~~ 354 (413)
T PRK15403 279 KDPTEPRFIWRAVPIQLVGLALLIVGNLL---WPHVWLWSVLGTSLYAFGIGLIFPTLFRFTLF-SNNLPKGTVSASLNM 354 (413)
T ss_pred ccCCchhHHHHHHHHHHHHHHHHHHHHHH---ccccHHHHHHHHHHHHHHHHHHhHHHHHHHhc-cCCCCCcHHHHHHHH
Confidence 55444443332222333333222211000 11122222333334444431122222111111 112247889999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhHhH
Q psy15226 240 ALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCS 275 (362)
Q Consensus 240 ~~~ig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~ 275 (362)
....+...++...+++.++ +-..++...++++.+.
T Consensus 355 ~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~ 389 (413)
T PRK15403 355 VILMVMAVSVEIGRWLWFN-GGRLPFHLLAVVAGVI 389 (413)
T ss_pred HHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHHHH
Confidence 9888889999888887665 5556666655554443
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.41 E-value=5e-12 Score=113.15 Aligned_cols=163 Identities=13% Similarity=0.040 Sum_probs=113.0
Q ss_pred HHHHHhHHHHh-hhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhh-hhHhHHHHHHHHHHHHHHhcCCCC
Q psy15226 117 TSMITYSSTLL-PKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCF-SAALGCLLTFSTGLFYLYQGELPN 194 (362)
Q Consensus 117 ~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 194 (362)
......+|.++ ++.|.+..+.++..+...+...+..++.|+++||+|||+.++. +.....++.+.+.. .+
T Consensus 14 ~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~--------~~ 85 (375)
T TIGR00899 14 ALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAW--------NR 85 (375)
T ss_pred HHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHh--------cc
Confidence 44556666655 4569998888999999999999999999999999999887654 44444444444443 12
Q ss_pred cchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhh--hHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhh
Q psy15226 195 FQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQA--SSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVH 272 (362)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~--~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 272 (362)
+.+..++...+.+.......+...++..|..|++.|+.+ .+.......+|..+++.+.+.+.+..||+..|++.+.+.
T Consensus 86 ~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~ 165 (375)
T TIGR00899 86 NYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAF 165 (375)
T ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHH
Confidence 222222222222222233345545677788877777654 567777788999999999999998899999999988877
Q ss_pred HhHHhhhheeeccCC
Q psy15226 273 FCSVVFNYFYLMETK 287 (362)
Q Consensus 273 ~i~~~~~~~~~~e~~ 287 (362)
++..++.++..||.+
T Consensus 166 ~~~~~~~~~~~~~~~ 180 (375)
T TIGR00899 166 VLCGVLVWLFLPSYP 180 (375)
T ss_pred HHHHHHHHHhCCCcc
Confidence 777666656677643
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.6e-11 Score=110.55 Aligned_cols=147 Identities=12% Similarity=-0.008 Sum_probs=101.1
Q ss_pred HHHHhHHHHh-hh-cCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCc
Q psy15226 118 SMITYSSTLL-PK-LDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNF 195 (362)
Q Consensus 118 ~~~~~~~~~~-~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (362)
....|.+.++ ++ .|.++.+.+.......++.+++.++++++.||+|+|+++..+..+.++......+ ...
T Consensus 276 ~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~-------~~~- 347 (438)
T PRK10133 276 ACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAF-------AGG- 347 (438)
T ss_pred HHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH-------cCC-
Confidence 3444666563 43 4999888899999999999999999999999999999888876666555544333 111
Q ss_pred chHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc-hhHHHHHHHHhhHh
Q psy15226 196 QYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLG-QHVIFFIYSSVHFC 274 (362)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~i 274 (362)
. ..+....+.+.+.....|..++...|..|++ .+.+.++.. ...+|+.++|.+.|.+.+..| .+..|++..+..+.
T Consensus 348 ~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~-~~~as~l~~-~~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~ 424 (438)
T PRK10133 348 H-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAV 424 (438)
T ss_pred h-HHHHHHHHHHHHHHHHHHHHHHHHHcccchh-hccchhHHh-HHhccchHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 1 2233333444444444455557888887754 567777775 455788999999999999887 67777655544444
Q ss_pred H
Q psy15226 275 S 275 (362)
Q Consensus 275 ~ 275 (362)
.
T Consensus 425 ~ 425 (438)
T PRK10133 425 I 425 (438)
T ss_pred H
Confidence 3
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.1e-11 Score=111.92 Aligned_cols=158 Identities=13% Similarity=-0.006 Sum_probs=118.6
Q ss_pred HHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcc
Q psy15226 117 TSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQ 196 (362)
Q Consensus 117 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (362)
.......|.+.++.|.+..+.++..+...++..++++..|++.||+|||+.+..+..+.+++.+.+.... ..++.
T Consensus 20 ~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~-----~~~~~ 94 (410)
T TIGR00885 20 DITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAA-----EIMNY 94 (410)
T ss_pred HhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH-----hhccH
Confidence 4455777888888899988999999999999999999999999999999999999999888877653310 11223
Q ss_pred hHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHH-------------------
Q psy15226 197 YIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITK------------------- 257 (362)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~------------------- 257 (362)
+..+...++.+.+.....+....++.+..|+++|++..++.+.+..+|..+++.+.+.+..
T Consensus 95 ~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 174 (410)
T TIGR00885 95 TLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEEL 174 (410)
T ss_pred HHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHH
Confidence 3334444444444422223333778888899999999999999999999999999887742
Q ss_pred -------hhchhHHHHHHHHhhHhHHhhh
Q psy15226 258 -------SLGQHVIFFIYSSVHFCSVVFN 279 (362)
Q Consensus 258 -------~~g~~~~~~~~~~~~~i~~~~~ 279 (362)
..+|+.+|.+.+++.++..++.
T Consensus 175 ~~~~~~~~~~w~~~fl~~a~~~~~~~~~~ 203 (410)
T TIGR00885 175 SAIKHSDLASVQTPYMIIGAVVLAVALLI 203 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2468999988877666554433
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.5e-11 Score=113.35 Aligned_cols=142 Identities=15% Similarity=0.031 Sum_probs=89.2
Q ss_pred HHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcc
Q psy15226 117 TSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQ 196 (362)
Q Consensus 117 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (362)
.....+.+.+.+....+....+.......++.+++.++.++++||+|+|+.+..+..+.+++.+........ .....
T Consensus 248 ~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 324 (473)
T PRK10429 248 NIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLA---APHNA 324 (473)
T ss_pred HHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhcc---CchhH
Confidence 334444454554442232344455666668889999999999999999999887777666555443221111 11222
Q ss_pred hHHHHHHHHHHHHhhcccccchhhcccCCC-------cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhch
Q psy15226 197 YIPYITTLLYAASYYGIGCLPNILVSELFP-------INVRCQASSCASVALAFGSFITTKFHILITKSLGQ 261 (362)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-------~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g~ 261 (362)
+..++...+.+.+.....+..+++++|..+ .+..|...|...+...++..+++.+.|.+.+..|+
T Consensus 325 ~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 325 LLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY 396 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 333333333333333334555688888855 33345677888889999999999999998876655
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.40 E-value=7.6e-12 Score=110.02 Aligned_cols=186 Identities=12% Similarity=0.120 Sum_probs=129.3
Q ss_pred hhhhccCcchhHHHHHHHHHHHHHhhhhHHHHHHhHHHHh----hhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy15226 88 YLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLL----PKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILG 163 (362)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g 163 (362)
..+++|+|+.|.-.+........ +..+....+.+. ++.+.+....+...+...+..++...+..++.+|+|
T Consensus 213 ~~~l~k~~~fw~~~l~v~g~~~~-----Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig 287 (412)
T PF01306_consen 213 VLSLFKMRNFWFFVLFVIGVAAI-----YDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIG 287 (412)
T ss_dssp HHHHTTSHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHhcchhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45677765555433333332222 233333334343 333444344567788888899999999999999999
Q ss_pred CchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHh-hcccccchhhcccCCCcchhhhhhHHH-HHHH
Q psy15226 164 RKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASY-YGIGCLPNILVSELFPINVRCQASSCA-SVAL 241 (362)
Q Consensus 164 rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~~p~~~r~~~~~~~-~~~~ 241 (362)
.|+.++++..++.+=...+++ .++.+.....-.+.+.-+ ....+.. -|+++.+|++..++...+. +...
T Consensus 288 ~k~~Lllag~i~~iRi~~~~~--------~~~~~~i~~~klLH~~e~~l~lva~f-kYI~~~fd~rlsAt~y~v~~~~~~ 358 (412)
T PF01306_consen 288 AKNLLLLAGVIMAIRIIGSGF--------ATNPWVISLIKLLHALEFPLLLVAAF-KYITAHFDKRLSATLYLVGFQFAK 358 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT----------SHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHS-GGGHHHHHHHHHTTTH
T ss_pred hHhHHHHHHHHHHHHHHHHhh--------hcchHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCHhHHHHHHHHHHHHHH
Confidence 999999999999998888776 234445555555555555 4444444 8999999999999998885 5778
Q ss_pred HHHHHHHHHHHHHHHHhhchhHHHHHHHHhhHhHHhhhheeeccCC
Q psy15226 242 AFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFNYFYLMETK 287 (362)
Q Consensus 242 ~ig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~ 287 (362)
+++.++.+.+.|.+.|+.|.+..|++.+.+.++..++..+.+++.+
T Consensus 359 ~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~ 404 (412)
T PF01306_consen 359 QIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDK 404 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SS
T ss_pred HHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCC
Confidence 9999999999999999999998999988888877777766665543
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.9e-12 Score=96.24 Aligned_cols=136 Identities=19% Similarity=0.214 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhcccccchhhcc
Q psy15226 143 VFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVS 222 (362)
Q Consensus 143 ~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (362)
...++..++.++.|++.||+|||+.+..+.....++.+.... ..+.+.......+.+.+.....+....++.
T Consensus 6 ~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 77 (141)
T TIGR00880 6 GYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFAL--------SSNITVLIIARFLQGFGAAFALVAGAALIA 77 (141)
T ss_pred eehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHH--------hccHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 456778899999999999999999998888877777766544 122333333334444333333455568899
Q ss_pred cCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhHhHHhhhheeeccC
Q psy15226 223 ELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFNYFYLMET 286 (362)
Q Consensus 223 e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~ 286 (362)
|.+|+++|+++.++.+....++..+++.+.+.+.+..+|+..+.+.+...++..+..++..||+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (141)
T TIGR00880 78 DIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPET 141 (141)
T ss_pred HHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 9999999999999999999999999999999999888998888888877777766665555653
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=2e-11 Score=111.56 Aligned_cols=125 Identities=22% Similarity=0.210 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcch-------HHHHHHHHHHHHhhcccc
Q psy15226 143 VFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQY-------IPYITTLLYAASYYGIGC 215 (362)
Q Consensus 143 ~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~ 215 (362)
...++..+++++.|+++||+|||+.+..+..+.+++.+++++ .++... ..+....+.+.+..+..+
T Consensus 72 ~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~ 144 (438)
T PRK09952 72 VGFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGL-------LPSFSTIGWWAPVLLVTLRAIQGFAVGGEWG 144 (438)
T ss_pred HHHHHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhc-------CCcHHHHHHHHHHHHHHHHHHHHhhhcccHH
Confidence 344567788999999999999999999999999998888776 111111 233333444444433334
Q ss_pred cchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHH--------HhhchhHHHHHHHHhhHh
Q psy15226 216 LPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILIT--------KSLGQHVIFFIYSSVHFC 274 (362)
Q Consensus 216 ~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~--------~~~g~~~~~~~~~~~~~i 274 (362)
....+++|.+|+++|+...+..+....+|..+++.+...+. ++.|||.+|++.++..++
T Consensus 145 ~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~ 211 (438)
T PRK09952 145 GAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLI 211 (438)
T ss_pred HHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHH
Confidence 44589999999999999999888888888888877665554 247999999877665444
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.6e-11 Score=105.68 Aligned_cols=209 Identities=12% Similarity=0.082 Sum_probs=131.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhc-cCCChHHHHhcCCHHHHHHHHHhHcCCcccHHHHHHHHHHHHhhccccccchhhh
Q psy15226 13 HVSYNSLNIALSILPVIFFILFSF-VPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGYLEL 91 (362)
Q Consensus 13 ~~~Wr~~f~~~~~~~~~~~~~~~~-lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (362)
..||+..-.+.++++++..+..++ .+|.+. ..++ . ++ ..+.+-+..+...
T Consensus 182 ~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~---~~~~---------------~-~~----------~~~~~~~~~~~~~ 232 (467)
T COG2211 182 ALGYQGTALVLGVIGVILLLFCFFNVKERVV---ETQP---------------T-KT----------GVKLKLKDSFLLI 232 (467)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhcccC---cccc---------------C-cc----------cccccHHHHHHHH
Confidence 348888888888888887776666 666542 0000 0 00 0001111223356
Q ss_pred ccCcchhHHHHHHHHHHHHHhhhhHHHHHHhHHHHhhhc-CCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhh
Q psy15226 92 LTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKL-DNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCF 170 (362)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~ 170 (362)
++|+.+....+..++. +.+.+.......++.+.. |.+.............+.+++.++..++++|+|+|+++.+
T Consensus 233 ~~Nrp~~~~l~~~l~~-----~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~ 307 (467)
T COG2211 233 FKNRPLLLLLLMNLLL-----FIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLI 307 (467)
T ss_pred HccchHHHHHHHHHHH-----HHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHH
Confidence 6765444333322222 222334444444444443 5554555567777777788889999999999999999999
Q ss_pred hhHhHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhcccccchhhcccCCC-------cchhhhhhHHHHHHHHH
Q psy15226 171 SAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFP-------INVRCQASSCASVALAF 243 (362)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-------~~~r~~~~~~~~~~~~i 243 (362)
+.++.+++.+.+.+ ...++....++..++.+.+.....+++|++++|..+ .+.-|...+...++..+
T Consensus 308 ~~~~~~i~~~~~~f------~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~ 381 (467)
T COG2211 308 GLLLLAVGYLLLYF------TPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKL 381 (467)
T ss_pred HHHHHHHHHHHHHh------hcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHH
Confidence 99998888887765 222333444444444444446677889999999853 33346677778889999
Q ss_pred HHHHHHHHHHHHHHhhch
Q psy15226 244 GSFITTKFHILITKSLGQ 261 (362)
Q Consensus 244 g~~~~~~~~~~~~~~~g~ 261 (362)
|.+++..+.|+..+..|+
T Consensus 382 g~ala~~~~g~~L~~~Gy 399 (467)
T COG2211 382 GLALAGFIPGWILGAIGY 399 (467)
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 999999999998876654
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.2e-11 Score=108.74 Aligned_cols=212 Identities=13% Similarity=0.089 Sum_probs=119.4
Q ss_pred chhhHHHHhhhhhhhHHHHHHHHHHHHHHHHH-hhccCCChHHHHhcCCHHHHHHHHHhHcCCcccHHHHHHHHHHHHhh
Q psy15226 2 VGTLAILLIGNHVSYNSLNIALSILPVIFFIL-FSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQE 80 (362)
Q Consensus 2 ~G~~~~~~l~~~~~Wr~~f~~~~~~~~~~~~~-~~~lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (362)
+|+.++..+.+..|||+.|++.++..++..+. .+++||+|+. +++ ++
T Consensus 147 ~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~~~------------------~~----------- 194 (394)
T PRK11652 147 LAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPETRPA---DAR------------------RT----------- 194 (394)
T ss_pred HHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCccCcc---ccc------------------hh-----------
Confidence 35555666666679999999988877765543 4457887531 000 00
Q ss_pred ccccccchhhhccCcchhHHHHHHHHHHHHHhhhhHHHHHHhHHHHhhh-cCCCCCchhHHHHHHHHHHHHHHHHHHHHh
Q psy15226 81 DLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPK-LDNAYFGPDQCILVFMIIMFLSNFLQAPLM 159 (362)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 159 (362)
+.+.++++.++++..+..... .... ..+...+..+.+.++++ .|.+..+.++......++..+++++.+++.
T Consensus 195 --~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 267 (394)
T PRK11652 195 --RVLASYRTLLSNRRFNCYLLM-LIGT----LAGIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPN 267 (394)
T ss_pred --HHHHHHHHHHcChHHHHHHHH-HHHH----HHHHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011234455655443322222 1111 11223334455666666 588877777777777888888989999999
Q ss_pred hhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHH
Q psy15226 160 DILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASV 239 (362)
Q Consensus 160 dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~ 239 (362)
||++++... ......++.+........ .....+.......+.+.+.....+....+..|.+| ++++++.++.+.
T Consensus 268 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~ 341 (394)
T PRK11652 268 KRFSTLMWQ--SVICCLLAGLLMWIPGWF---GVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-YLAGTAGALLGG 341 (394)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHh---ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHH
Confidence 998833222 222222222211110000 11122233333333333332233444467788887 578999999999
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q psy15226 240 ALAFGSFITTKFHILITKS 258 (362)
Q Consensus 240 ~~~ig~~~~~~~~~~~~~~ 258 (362)
...+|+.+++.+.+.+...
T Consensus 342 ~~~lg~~~~~~~~~~~~~~ 360 (394)
T PRK11652 342 LQNIGSGLAALLSAMLPQT 360 (394)
T ss_pred HHHHHHHHHHHHHHHccCC
Confidence 9999999999998876544
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.7e-11 Score=111.21 Aligned_cols=165 Identities=13% Similarity=0.096 Sum_probs=111.3
Q ss_pred HHHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCc
Q psy15226 116 ITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNF 195 (362)
Q Consensus 116 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (362)
.+.+..+.|.+.+++|++..+.++...... ....+.++.|++.||+|+|+++.++.+...++.+.+++.... ....+
T Consensus 43 ~y~fsv~s~~L~~~lgls~~~l~~i~svg~-~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~--~i~~s 119 (591)
T PTZ00207 43 MYAFNLISGAMQARYNLTQRDLSTITTVGI-AVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQE--VIEGS 119 (591)
T ss_pred HHHHHHHHHHHHHHhCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcc--cccCc
Confidence 367778889888888999777777666533 334566788999999999999999999999999887762100 00122
Q ss_pred chHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhHhH
Q psy15226 196 QYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCS 275 (362)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~ 275 (362)
.+...+...+.+.+.....+.....+.+++| ++||.+.|+......+|+++.+.+...+.. .+|+..+++.+++.++.
T Consensus 120 ~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-~~~~~~fl~l~vl~~vv 197 (591)
T PTZ00207 120 VVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-DNTSAYFFFLMSFALVV 197 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHH
Confidence 3333333333333332222333366788887 689999999999999999865555544443 35777777777777766
Q ss_pred Hhhhheeecc
Q psy15226 276 VVFNYFYLME 285 (362)
Q Consensus 276 ~~~~~~~~~e 285 (362)
.++.+.+++.
T Consensus 198 ~ll~~~~vr~ 207 (591)
T PTZ00207 198 GILAIVFMRL 207 (591)
T ss_pred HHHHHhheeC
Confidence 6665555544
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.2e-11 Score=109.24 Aligned_cols=137 Identities=8% Similarity=-0.035 Sum_probs=107.2
Q ss_pred hHHHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCC
Q psy15226 115 GITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPN 194 (362)
Q Consensus 115 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (362)
+......+.|.+.++.|.+..+.++..+...++..++.++.|+++||+|||+.+..+..+.+++...+.. .+
T Consensus 21 ~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~--------~~ 92 (381)
T PRK03633 21 AIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGL--------MV 92 (381)
T ss_pred hhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hc
Confidence 3466778899999999999889999999999999999999999999999999999998888888777655 12
Q ss_pred cchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15226 195 FQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSL 259 (362)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~ 259 (362)
+.+..+....+.+.+.....+.....+.+..|+++|+++.+.......+|..+++.+.+.+.+..
T Consensus 93 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 157 (381)
T PRK03633 93 GFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTEL 157 (381)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 33343444444444433333333355667788889999999999999999999999998876643
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.8e-11 Score=108.89 Aligned_cols=161 Identities=16% Similarity=0.071 Sum_probs=111.0
Q ss_pred HHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhc-----CCchhh-hhhhHhHHHHHHHHHHHHHHhcC
Q psy15226 118 SMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDIL-----GRKPLS-CFSAALGCLLTFSTGLFYLYQGE 191 (362)
Q Consensus 118 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----grr~~~-~~~~~~~~~~~~~~~~~~~~~~~ 191 (362)
....-.|.+.++.|.+..+.++.... .+...+ .+++|+++||+ |||+.+ +.+.+..+++...+.+ .
T Consensus 6 ~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~------~ 77 (356)
T TIGR00901 6 LVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSF------L 77 (356)
T ss_pred hHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHc------C
Confidence 34456688889999998777777544 444444 88999999998 888874 5556666665555443 1
Q ss_pred CC-CcchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc--------hh
Q psy15226 192 LP-NFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLG--------QH 262 (362)
Q Consensus 192 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g--------~~ 262 (362)
.. ...+.......+.........+...+++.|.+|+++|+.+.++......+|..+++.+.+.+.++.| |+
T Consensus 78 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr 157 (356)
T TIGR00901 78 VPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWG 157 (356)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccH
Confidence 11 1111222222222222233344445889999999999999999999999999999999999888888 99
Q ss_pred HHHHHHHHhhHhHHhhhheeeccC
Q psy15226 263 VIFFIYSSVHFCSVVFNYFYLMET 286 (362)
Q Consensus 263 ~~~~~~~~~~~i~~~~~~~~~~e~ 286 (362)
..|++.++..++..+...+..||+
T Consensus 158 ~~f~i~ai~~l~~~~~~~~~~~e~ 181 (356)
T TIGR00901 158 YIFFWTALLILPGLLVTLFLAKEP 181 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCC
Confidence 999888887776655544445664
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.8e-11 Score=109.48 Aligned_cols=164 Identities=10% Similarity=-0.053 Sum_probs=101.6
Q ss_pred chhhhccCcchhHHHHHHHHHHHHHhhhhHHHHHHhHHHHhhhc-CCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q psy15226 87 GYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKL-DNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRK 165 (362)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr 165 (362)
.+++++++|......+..++... +........|.+.++. |.+............++.+++.++.++++||+|+|
T Consensus 220 ~~~~l~~n~~f~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~ 294 (448)
T PRK09848 220 SLQTLKRNRPLFMLCIGALCVLI-----STFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKK 294 (448)
T ss_pred HHHHHhCCchHHHHHHHHHHHHH-----HHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH
Confidence 35667777554333222222211 2234444556666554 65533333333334566788999999999999999
Q ss_pred hhhhhhhHhHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhcccccchhhcccCCCcc-------hhhhhhHHHH
Q psy15226 166 PLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPIN-------VRCQASSCAS 238 (362)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~-------~r~~~~~~~~ 238 (362)
+.+..+..+.+++.+.+.+ ....+.+.......+.+.+.....+..+++.+|..|.+ .+|...|+.+
T Consensus 295 ~~~~~g~~~~~i~~~~~~~------~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~ 368 (448)
T PRK09848 295 NTFLIGALLGTCGYLLFFW------VSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFS 368 (448)
T ss_pred HHHHHHHHHHHHHHHHHHH------cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHH
Confidence 9999988877777665543 11122233333333344444333344557778877643 4588899999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhch
Q psy15226 239 VALAFGSFITTKFHILITKSLGQ 261 (362)
Q Consensus 239 ~~~~ig~~~~~~~~~~~~~~~g~ 261 (362)
+...+|..+++.+.+.+.+..|+
T Consensus 369 ~~~klg~aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 369 FTRKCGQAIGGSIPAFILGLSGY 391 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999988776554
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.4e-11 Score=116.77 Aligned_cols=188 Identities=13% Similarity=0.043 Sum_probs=132.7
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHH
Q psy15226 99 RAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLL 178 (362)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~ 178 (362)
+.+++......+.+.........-.+.+.++++++..+.+++.+...++..++.++.+++.||.|||+.+.++.++++++
T Consensus 32 ~~~~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg 111 (633)
T TIGR00805 32 KVFSLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLG 111 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHH
Confidence 33434444344444333344555667777888999899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcC-----------------------C-----------------C--C-cchHHHHHHHHHHHHhhcccc
Q psy15226 179 TFSTGLFYLYQGE-----------------------L-----------------P--N-FQYIPYITTLLYAASYYGIGC 215 (362)
Q Consensus 179 ~~~~~~~~~~~~~-----------------------~-----------------~--~-~~~~~~~~~~~~~~~~~~~~~ 215 (362)
.+++++-...... . . . .....++..++.+.+.....+
T Consensus 112 ~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~ 191 (633)
T TIGR00805 112 SFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFP 191 (633)
T ss_pred HHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchh
Confidence 9887763211000 0 0 0 111222334444444344456
Q ss_pred cchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh----------------------chhHHHHHHHHhhH
Q psy15226 216 LPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSL----------------------GQHVIFFIYSSVHF 273 (362)
Q Consensus 216 ~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~----------------------g~~~~~~~~~~~~~ 273 (362)
...+++.|.+|++.|+...++.+....+|..+++.+++.+.+.+ +|+..|++.+++.+
T Consensus 192 ~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~ 271 (633)
T TIGR00805 192 LGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVAL 271 (633)
T ss_pred cCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHH
Confidence 66699999999999999999999999999999999999887542 26667877777776
Q ss_pred hHHhhhheeeccCC
Q psy15226 274 CSVVFNYFYLMETK 287 (362)
Q Consensus 274 i~~~~~~~~~~e~~ 287 (362)
+..+.. ++.|++.
T Consensus 272 l~~v~l-~~~p~~l 284 (633)
T TIGR00805 272 LTSIPF-FFFPKAL 284 (633)
T ss_pred HHHHHH-HhCcccc
Confidence 665443 4556543
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.4e-11 Score=113.32 Aligned_cols=151 Identities=17% Similarity=0.193 Sum_probs=112.3
Q ss_pred HHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcchHH
Q psy15226 120 ITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIP 199 (362)
Q Consensus 120 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (362)
..-++.+..+.|-+ .+..|+.+...++..++.++.|+++|.+|||..++.+.++..++.++.+. .++....
T Consensus 64 a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~at--------A~~~~~~ 134 (599)
T PF06609_consen 64 ASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCAT--------AQNMNTF 134 (599)
T ss_pred HHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhc--------CCcHHHH
Confidence 34456677788777 67778888899999999999999999999999999999999999988755 3444455
Q ss_pred HHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhHhHHhhh
Q psy15226 200 YITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFN 279 (362)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~ 279 (362)
+....+.+.+. +...+....++|..|.+.|..+.++.....-.....++.+...+..+.+|||.|++..+...++++..
T Consensus 135 iag~~l~Gvga-G~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~ 213 (599)
T PF06609_consen 135 IAGMVLYGVGA-GVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLI 213 (599)
T ss_pred HHHHHHHHHhh-HHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHH
Confidence 55555555554 22223345689999999998887776655545555666666666566789999998888766665544
Q ss_pred h
Q psy15226 280 Y 280 (362)
Q Consensus 280 ~ 280 (362)
+
T Consensus 214 ~ 214 (599)
T PF06609_consen 214 F 214 (599)
T ss_pred H
Confidence 3
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.3e-11 Score=108.02 Aligned_cols=136 Identities=15% Similarity=-0.030 Sum_probs=102.9
Q ss_pred HHHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCc
Q psy15226 116 ITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNF 195 (362)
Q Consensus 116 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (362)
......+.|.+.+++|.++.+.++..+...++..+++++.|+++||+|||+++..+..+.+++.+++.... ..++
T Consensus 42 ~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~-----~a~~ 116 (438)
T PRK10133 42 NNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAA-----EIMN 116 (438)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH-----hcCC
Confidence 46667788998888899999999999999999999999999999999999999999999998887653200 1223
Q ss_pred chHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy15226 196 QYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILIT 256 (362)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~ 256 (362)
....+....+.+.+.....+....++.|..|.+.|...+++.+....+|..+++.+++.+.
T Consensus 117 ~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 117 YTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555542333333467778777776767788999999999999998876543
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.7e-12 Score=111.60 Aligned_cols=121 Identities=12% Similarity=-0.044 Sum_probs=81.1
Q ss_pred HHHHHhHHHHhhhc-CCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCC-
Q psy15226 117 TSMITYSSTLLPKL-DNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPN- 194 (362)
Q Consensus 117 ~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 194 (362)
.....+.|.++++. |.+..+.+.......+..+++.+++|+++||+|||+.+..+......+...+.. ....
T Consensus 242 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~------~~~~~ 315 (366)
T TIGR00886 242 LGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVL------GLVSP 315 (366)
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHh------cCCCc
Confidence 45667778787654 888778888888888999999999999999999998877776665555544433 1111
Q ss_pred -cchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHH
Q psy15226 195 -FQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFG 244 (362)
Q Consensus 195 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig 244 (362)
.......................+.+.+|..| +++|++.|+.+..+++|
T Consensus 316 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 316 LSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG 365 (366)
T ss_pred chHHHHHHHHHHHHHHhccccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence 22222222222222322222334577888887 68999999998887765
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.5e-11 Score=106.05 Aligned_cols=158 Identities=16% Similarity=0.081 Sum_probs=120.4
Q ss_pred HHHHHhHHHHhhhcCCCCCc-hhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCc
Q psy15226 117 TSMITYSSTLLPKLDNAYFG-PDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNF 195 (362)
Q Consensus 117 ~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (362)
.......|.+.++.|++..+ .+.+...+..++.++.+++|+++||+|.|+++..+.+..++..++.++ .++
T Consensus 43 ~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~f--------a~S 114 (511)
T TIGR00806 43 PGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLL--------GTS 114 (511)
T ss_pred chHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHH--------HHH
Confidence 44555667777888999888 889999999999999999999999999999999999999998888776 123
Q ss_pred chHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHH---HHHhh
Q psy15226 196 QYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFI---YSSVH 272 (362)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~~---~~~~~ 272 (362)
.....+..++.+.+-+... ..+.++...+|+++|+++.|+.+....+|.++++.+.+. ....||+....+ .....
T Consensus 115 l~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~Ln~Isl~s~ 192 (511)
T TIGR00806 115 VWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYSTLNIISLVFM 192 (511)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHHH
Confidence 3444444555555543333 445899999999999999999999999999999999998 567898854332 22223
Q ss_pred HhHHhhhheeecc
Q psy15226 273 FCSVVFNYFYLME 285 (362)
Q Consensus 273 ~i~~~~~~~~~~e 285 (362)
.++ .+..+++|.
T Consensus 193 ~~a-~~~a~~LP~ 204 (511)
T TIGR00806 193 TFS-VFLALFLKR 204 (511)
T ss_pred HHH-HHHHHhCCC
Confidence 333 333366774
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.7e-11 Score=107.92 Aligned_cols=167 Identities=11% Similarity=0.065 Sum_probs=119.5
Q ss_pred hhhhHHHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhc-----CCch-hhhhhhHhHHHHHHHHHHH
Q psy15226 112 RLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDIL-----GRKP-LSCFSAALGCLLTFSTGLF 185 (362)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----grr~-~~~~~~~~~~~~~~~~~~~ 185 (362)
+...+.....-+|.++++.|++.++.++....... .+..+++|+++||+ |||+ .+..+..+.+++...+.+
T Consensus 11 ~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~- 87 (402)
T PRK11902 11 SGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAF- 87 (402)
T ss_pred HhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHh-
Confidence 33344666778899999999998888877665554 68899999999999 7775 677777777777666554
Q ss_pred HHHhcCCC-CcchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHh-hchhH
Q psy15226 186 YLYQGELP-NFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKS-LGQHV 263 (362)
Q Consensus 186 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~-~g~~~ 263 (362)
... .+.+.......+.........+...+++.|..|+++|+++.++......+|..+++.+.+.+.+. .||+.
T Consensus 88 -----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~ 162 (402)
T PRK11902 88 -----CPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGN 162 (402)
T ss_pred -----cCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHH
Confidence 111 12222222222333222444455568999999999999999999999999999999998888885 49999
Q ss_pred HHHHHHHhhHhHHhhhheeeccCC
Q psy15226 264 IFFIYSSVHFCSVVFNYFYLMETK 287 (362)
Q Consensus 264 ~~~~~~~~~~i~~~~~~~~~~e~~ 287 (362)
.|++.++..++..+. .+..||++
T Consensus 163 ~f~i~a~~~l~~~l~-~~~~~e~~ 185 (402)
T PRK11902 163 TYLLMAGLMLAGALT-TLWAPEPE 185 (402)
T ss_pred HHHHHHHHHHHHHHH-HHhcCCCc
Confidence 999888776665443 34566653
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.33 E-value=8.7e-11 Score=106.48 Aligned_cols=186 Identities=13% Similarity=0.023 Sum_probs=122.9
Q ss_pred HHHHHHHHHHHhhhhHHHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhh----hcCCchhhhhh-hHhH
Q psy15226 101 FTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMD----ILGRKPLSCFS-AALG 175 (362)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~grr~~~~~~-~~~~ 175 (362)
++.........++. +.....+.+.++++.|.+....+.......+...+..++.|+++| |+|||+.++.+ ....
T Consensus 6 li~~~~~~~Giq~~-~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~ 84 (477)
T TIGR01301 6 LLRVASVAAGVQFG-WALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALV 84 (477)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHH
Confidence 33334444444443 466677788888889999888889999999999999999999999 59999988775 4444
Q ss_pred HHHHHHHHHHHHHh----c--CCCCcc---hHHHHHHHHHHHHh-hcccccchhhcccCCCcchh--hhhhHHHHHHHHH
Q psy15226 176 CLLTFSTGLFYLYQ----G--ELPNFQ---YIPYITTLLYAASY-YGIGCLPNILVSELFPINVR--CQASSCASVALAF 243 (362)
Q Consensus 176 ~~~~~~~~~~~~~~----~--~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~e~~p~~~r--~~~~~~~~~~~~i 243 (362)
+++..++....... . ...... ...+....+..... ....|. .++++|..|+++| +.+.++.+.+.++
T Consensus 85 ~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~-rALiaDl~p~~~~~~~~a~~~~~~~~~l 163 (477)
T TIGR01301 85 AFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPC-RAFLADLTGGDARRTRIANAYFSFFMAI 163 (477)
T ss_pred HHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHH-HHhcccccCchhHHHHHHHHHHHHHHHH
Confidence 44444443310000 0 000001 11122222222233 333444 4899999998865 5788888999999
Q ss_pred HHHHHHHHHHHH--HHhh-------------chhHHHHHHHHhhHhHHhhhheeeccCCC
Q psy15226 244 GSFITTKFHILI--TKSL-------------GQHVIFFIYSSVHFCSVVFNYFYLMETKQ 288 (362)
Q Consensus 244 g~~~~~~~~~~~--~~~~-------------g~~~~~~~~~~~~~i~~~~~~~~~~e~~~ 288 (362)
|+.+++.+++.. .+.. +.+..|.+.+++.+++.++..+..+|...
T Consensus 164 G~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~ 223 (477)
T TIGR01301 164 GNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPL 223 (477)
T ss_pred HHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCC
Confidence 999999988764 2211 45678888888888888888788888643
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >KOG2504|consensus | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.1e-12 Score=115.73 Aligned_cols=182 Identities=14% Similarity=0.139 Sum_probs=130.7
Q ss_pred hhhccCcchhHHHHHHHHHHHHHhhhhHHHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCch--
Q psy15226 89 LELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKP-- 166 (362)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~-- 166 (362)
.++++++ ..+...........++.....++|.+.++.|.+..++....++.++..+++.++.|+++|+...++
T Consensus 292 ~~ll~~~-----~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~ 366 (509)
T KOG2504|consen 292 LSLLKDP-----KFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALV 366 (509)
T ss_pred HHHHcCc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHH
Confidence 3566653 233333334444446778888999999999999999999999999999999999999999988443
Q ss_pred hhhhhhHhHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHH
Q psy15226 167 LSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSF 246 (362)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~ 246 (362)
+..++.+..+++.+.+.+ .......+.....++...+.+.......+.|+.+.++-..+.|+...+..++..
T Consensus 367 ~~~~~ll~~gl~~~~~p~--------~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l 438 (509)
T KOG2504|consen 367 LFLLTLLIAGLARLFLPF--------ATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGAL 438 (509)
T ss_pred HHHHHHHHHHHHHHHHHH--------hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHH
Confidence 444445555555433333 223333344444444443555555546789999999999999999999999999
Q ss_pred HHHHHHHHHHHhhc-hhHHHHHHHHhhHhHHhhhheeec
Q psy15226 247 ITTKFHILITKSLG-QHVIFFIYSSVHFCSVVFNYFYLM 284 (362)
Q Consensus 247 ~~~~~~~~~~~~~g-~~~~~~~~~~~~~i~~~~~~~~~~ 284 (362)
++|.+.|.+.+..| |...|...+...+++..+. +..|
T Consensus 439 ~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~-~~~~ 476 (509)
T KOG2504|consen 439 VGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLL-LILR 476 (509)
T ss_pred cCcccceeeeeccCCeeeehhhcChHHHHHHHHH-HHhH
Confidence 99999999988887 7778888888877775544 4444
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.9e-10 Score=104.28 Aligned_cols=119 Identities=9% Similarity=0.040 Sum_probs=72.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhccccc
Q psy15226 137 PDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCL 216 (362)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (362)
.+.......++.+++.+++++++||+|+|+.+..+....++..+.+.+ . .............+.+.+.....++
T Consensus 265 ~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~l~g~~~~~~~~l 338 (460)
T PRK11462 265 FVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFF---V---PMQASITMFVFIFVIGVLHQLVTPI 338 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH---h---chhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777888999999999999999998876554443333322211 1 1111212222223333332334455
Q ss_pred chhhcccCCC-----cchh--hhhhHHHHHHHHHHHHHHHHHHHHHHHhhch
Q psy15226 217 PNILVSELFP-----INVR--CQASSCASVALAFGSFITTKFHILITKSLGQ 261 (362)
Q Consensus 217 ~~~~~~e~~p-----~~~r--~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g~ 261 (362)
.+++.+|..+ +.+| |...+...+...+|..+++.+.|.+.+..|+
T Consensus 339 ~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy 390 (460)
T PRK11462 339 QWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGY 390 (460)
T ss_pred HHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 5677777755 2234 4444666688999999999999888876554
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.1e-10 Score=99.20 Aligned_cols=165 Identities=12% Similarity=0.105 Sum_probs=122.9
Q ss_pred hhHHHHHHhHHHHhh-hcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCC
Q psy15226 114 GGITSMITYSSTLLP-KLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGEL 192 (362)
Q Consensus 114 ~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (362)
.+.+........+-. ++|++..+.........+.+++|++++|++.||+|.|+++..+.++..+..+...+ .
T Consensus 266 DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~-------~ 338 (438)
T COG2270 266 DGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIF-------L 338 (438)
T ss_pred hhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHH-------c
Confidence 355666666666666 66999888889999999999999999999999999999988888777766655443 1
Q ss_pred CCcchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc-hhHHHHHHHHh
Q psy15226 193 PNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLG-QHVIFFIYSSV 271 (362)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g-~~~~~~~~~~~ 271 (362)
...........+.+...++..+..-++.+++.|+++-+...|+++..++.....+|.+.+.+.+..| .|..+....++
T Consensus 339 -~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vl 417 (438)
T COG2270 339 -EGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVL 417 (438)
T ss_pred -cccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 1222222222333333366667778999999999999999999999999999999999998888665 45556566666
Q ss_pred hHhHHhhhheeeccCC
Q psy15226 272 HFCSVVFNYFYLMETK 287 (362)
Q Consensus 272 ~~i~~~~~~~~~~e~~ 287 (362)
..++.++. ...|+.+
T Consensus 418 l~iGl~~L-~~v~~~~ 432 (438)
T COG2270 418 LLIGLLLL-LRVKVPG 432 (438)
T ss_pred HHhhHhhE-EeecCCC
Confidence 66665444 5666553
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.8e-10 Score=103.81 Aligned_cols=204 Identities=16% Similarity=0.214 Sum_probs=134.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhhc-cCCChHHHHhcCCHHHHHHHHHhHcCCcccHHHHHHHHHHHHhhccccccchhhhcc
Q psy15226 15 SYNSLNIALSILPVIFFILFSF-VPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGYLELLT 93 (362)
Q Consensus 15 ~Wr~~f~~~~~~~~~~~~~~~~-lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (362)
+|++..++.+++.++..+...+ .+|.++ +.++ .+++.+-+..+++.++
T Consensus 175 ~~~~~~~v~~iv~~v~~~i~~~~~ke~~~------~~~~-------------------------~~~~~~~~~~~~~~~~ 223 (428)
T PF13347_consen 175 GYRWMALVLAIVGLVFFLITFFFVKERSV------EVTE-------------------------QEKKISLRDSLRSLFR 223 (428)
T ss_pred HHHHHHHHHHHHHHHHhhhhhheeeeccc------cccc-------------------------cccccccccchhhhcc
Confidence 6999999998888887776555 777211 0000 0011123345677777
Q ss_pred CcchhHHHHHHHHHHHHHhhhhHHHHHHhHHHHhhhc-CCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhh
Q psy15226 94 NKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKL-DNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSA 172 (362)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~ 172 (362)
+|..++.... ...... +........+.+.+.. |.+ ...+.......+...++.+++++++||+|+|+.+..+.
T Consensus 224 nr~~~~l~~~-~~~~~~----~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~ 297 (428)
T PF13347_consen 224 NRPFRILLLA-FFLQWL----AFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGL 297 (428)
T ss_pred cchHHHHHHH-HHHHHh----hhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhH
Confidence 7544332222 222221 2233344445555554 444 45667777888999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhcccccchhhcccCCCc-------chhhhhhHHHHHHHHHHH
Q psy15226 173 ALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPI-------NVRCQASSCASVALAFGS 245 (362)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-------~~r~~~~~~~~~~~~ig~ 245 (362)
.+.+++.+.+.+. ..++.+..++...+.+.+.......++++.+|..+. +..|...|+.++...++.
T Consensus 298 ~~~~~~~~~~~~~------~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~ 371 (428)
T PF13347_consen 298 LLAALGFLLLFFL------GPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQ 371 (428)
T ss_pred HHHHHHHHHHHHH------HhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHH
Confidence 9988888776552 113444445555555555545556777899998863 345788888899999999
Q ss_pred HHHHHHHHHHHHhhch
Q psy15226 246 FITTKFHILITKSLGQ 261 (362)
Q Consensus 246 ~~~~~~~~~~~~~~g~ 261 (362)
.+++.+.+.+.+..|+
T Consensus 372 ~la~~i~g~~l~~~Gy 387 (428)
T PF13347_consen 372 GLAGAIVGLLLALVGY 387 (428)
T ss_pred HHHHHHHHHHHHHhCc
Confidence 9999999988776554
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.5e-10 Score=107.14 Aligned_cols=164 Identities=10% Similarity=0.101 Sum_probs=112.0
Q ss_pred HHHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhc-----CCchh-hhhhhHhHHHHHHHHHHHHHHh
Q psy15226 116 ITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDIL-----GRKPL-SCFSAALGCLLTFSTGLFYLYQ 189 (362)
Q Consensus 116 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----grr~~-~~~~~~~~~~~~~~~~~~~~~~ 189 (362)
.......+|.++++.|.+..+.+... ..+... ++.+++|+++||+ |||+. +..+.+..+++...+++.
T Consensus 28 ~~~~~~~l~~~l~~~g~~~~~ig~~~-~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~---- 101 (491)
T PRK11010 28 LALTSGTLQAWMTVENIDLKTIGFFS-LVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFL---- 101 (491)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHc----
Confidence 35556667888888888866666542 222222 6889999999999 99885 556666666666555441
Q ss_pred cCCCCcchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHH-hhchhHHHHHH
Q psy15226 190 GELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITK-SLGQHVIFFIY 268 (362)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~-~~g~~~~~~~~ 268 (362)
.+..+.+.......+.+.+.....+...++..|.+|+++|+++.++......+|..+++.+.+.+.+ ..||+..|++.
T Consensus 102 -~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~ 180 (491)
T PRK11010 102 -EPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLM 180 (491)
T ss_pred -CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHH
Confidence 1111222222223333333233344445899999999999999999999999999999999988888 46999999998
Q ss_pred HHhhHhHHhhhheeeccCC
Q psy15226 269 SSVHFCSVVFNYFYLMETK 287 (362)
Q Consensus 269 ~~~~~i~~~~~~~~~~e~~ 287 (362)
+++.++..+.. ++.||+.
T Consensus 181 a~l~ll~~l~~-~~~~e~~ 198 (491)
T PRK11010 181 AALLIPCIIAT-LLAPEPT 198 (491)
T ss_pred HHHHHHHHHHH-HhcCCCc
Confidence 88777665544 3467653
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.30 E-value=9.7e-11 Score=106.56 Aligned_cols=164 Identities=11% Similarity=0.028 Sum_probs=102.2
Q ss_pred HHHHHHhHHHHhhh-cCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCC
Q psy15226 116 ITSMITYSSTLLPK-LDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPN 194 (362)
Q Consensus 116 ~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (362)
......+.|.++++ .|++..+.+...+...++..+++++.|+++||+|||+.+..+..+.+++........... .
T Consensus 26 ~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~----~ 101 (420)
T PRK09528 26 WSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAP----L 101 (420)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHH----H
Confidence 34566777777776 699999999999999999999999999999999999998776555544332211100000 0
Q ss_pred cchHHHHHHHHHHHHh-hcccccchhhcccCCC--cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHh
Q psy15226 195 FQYIPYITTLLYAASY-YGIGCLPNILVSELFP--INVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSV 271 (362)
Q Consensus 195 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~~p--~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~~~~~~ 271 (362)
................ ....+.. ....++.+ .+.++...+.......+|..++|.+.+.+.+ .+|+..|++.+++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~ 179 (420)
T PRK09528 102 LQYNILLGAIVGGIYLGFGFLAGA-GAIEAYIERVSRRSGFEYGRARMWGSLGWALCAFIAGILFN-INPQINFWLGSGS 179 (420)
T ss_pred HHHHHHHHHHHHHHHhhhhhccch-hhhhhHHHHHHhhccccchhhHHhhhHHHHHHHHHHHHHHh-cCchHhHHHHHHH
Confidence 0000011111111111 1111111 12222222 2346677788888899999999999998876 5888888887777
Q ss_pred hHhHHhhhheeecc
Q psy15226 272 HFCSVVFNYFYLME 285 (362)
Q Consensus 272 ~~i~~~~~~~~~~e 285 (362)
.++..++.+...+|
T Consensus 180 ~~~~~~~~~~~~~~ 193 (420)
T PRK09528 180 ALILLVLLFFAKPD 193 (420)
T ss_pred HHHHHHHHhccccc
Confidence 76665555443333
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.3e-10 Score=101.62 Aligned_cols=141 Identities=13% Similarity=0.041 Sum_probs=90.8
Q ss_pred HHHHhHHHHhhhcCC--CCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCc
Q psy15226 118 SMITYSSTLLPKLDN--AYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNF 195 (362)
Q Consensus 118 ~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (362)
....+++.+.++.+. +................+|.++++++.||+++|+++.......++..++... .++
T Consensus 250 ~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~-------~~~- 321 (410)
T TIGR00885 250 MCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIF-------AGG- 321 (410)
T ss_pred HHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH-------cCC-
Confidence 445677777765432 2222233455555778999999999999999999888877777776666544 111
Q ss_pred chHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh------chhHHHHHHH
Q psy15226 196 QYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSL------GQHVIFFIYS 269 (362)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~------g~~~~~~~~~ 269 (362)
......+.+.+.+.....|..++...+..+++.+..+.++... .+|+.+.|.+.|.+.|+. +.+..|++..
T Consensus 322 -~~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~--~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~ 398 (410)
T TIGR00885 322 -HVGLYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVMA--IIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPL 398 (410)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHH--HhccchHHHHHHHHHHHhcccccCccchHHHHHH
Confidence 1223333334434323336666888888887765444444443 399999999999999954 3555665533
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.2e-10 Score=105.00 Aligned_cols=118 Identities=13% Similarity=0.050 Sum_probs=79.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhcccccc
Q psy15226 138 DQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLP 217 (362)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (362)
........+..+++.+++++++||+|+|+.+..+....++......+ . ..++.+..++...+.+.+.....+..
T Consensus 267 ~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~i~g~~~~~~~~~~ 340 (444)
T PRK09669 267 TLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFF---I---PPSNVWLIFALNILFNFIQNLTTPLQ 340 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH---h---CcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556777888999999999999999988776655543332222 0 12233333333344444444445666
Q ss_pred hhhcccCCC-------cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhch
Q psy15226 218 NILVSELFP-------INVRCQASSCASVALAFGSFITTKFHILITKSLGQ 261 (362)
Q Consensus 218 ~~~~~e~~p-------~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g~ 261 (362)
+++++|..+ .+..|...+..+++..+|..+++.+.|.+.+..|+
T Consensus 341 ~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy 391 (444)
T PRK09669 341 WSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY 391 (444)
T ss_pred HHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 788988875 23346677888889999999999999999887665
|
|
| >KOG2532|consensus | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.7e-11 Score=108.82 Aligned_cols=149 Identities=18% Similarity=0.223 Sum_probs=121.1
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHH
Q psy15226 130 LDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAAS 209 (362)
Q Consensus 130 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (362)
.+++..+.+++.+....+.+++.+.+|++.||+|-|+++..+.++.+++.++..+.. ....+..++..++.+.+
T Consensus 68 ~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa------~~~~~~~~~~R~lqGl~ 141 (466)
T KOG2532|consen 68 YDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAA------SIGFYLLLVLRFLQGLG 141 (466)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHH------HhcchhhHHHHHHhHHH
Confidence 356667778999999999999999999999999999999999999999888876632 22333445555555555
Q ss_pred h-hcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHh-hchhHHHHHHHHhhHhHHhhhheeecc
Q psy15226 210 Y-YGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKS-LGQHVIFFIYSSVHFCSVVFNYFYLME 285 (362)
Q Consensus 210 ~-~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~i~~~~~~~~~~e 285 (362)
. ..+.++ ..+.+.+.|+++|++..++...+..+|.+++-.+.|.+.+. .||+..|++.+++.++..++.+++..+
T Consensus 142 ~g~~~pa~-~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d 218 (466)
T KOG2532|consen 142 QGVLFPAI-GSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSD 218 (466)
T ss_pred HhHHHhhh-hceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcC
Confidence 5 444444 48999999999999999999999999999999999999998 999999999999988876665454443
|
|
| >KOG0255|consensus | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.8e-11 Score=111.59 Aligned_cols=145 Identities=19% Similarity=0.145 Sum_probs=115.7
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHh
Q psy15226 131 DNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASY 210 (362)
Q Consensus 131 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (362)
..+.....+..+++.++..+|++++|.++||+|||++++.+.++..++.+..++ ..+.....+..++.+.+.
T Consensus 114 c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~--------a~~~~~~~~~Rfl~G~~~ 185 (521)
T KOG0255|consen 114 CDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAF--------APNYWMFLIFRFLSGFFG 185 (521)
T ss_pred eCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHH--------hCcHHHHHHHHHHHHhhc
Confidence 455566678889999999999999999999999999999999999999988777 233344444444444444
Q ss_pred hcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhHhHHhhhheeeccCC
Q psy15226 211 YGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFNYFYLMETK 287 (362)
Q Consensus 211 ~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~ 287 (362)
.+.....+.+.+|++++++|+.+..+ ..+...++.+++...+++.+ +||+.+++......+..++ +++.||++
T Consensus 186 ~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~Es~ 258 (521)
T KOG0255|consen 186 SGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFLPPESP 258 (521)
T ss_pred cchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHccCcCh
Confidence 55556667899999999999999999 88888899999999888877 8999998888887777555 46666764
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.1e-11 Score=111.96 Aligned_cols=132 Identities=10% Similarity=0.017 Sum_probs=97.4
Q ss_pred hhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHH-HHhcCC-CCcchHHHHHHHH
Q psy15226 128 PKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFY-LYQGEL-PNFQYIPYITTLL 205 (362)
Q Consensus 128 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~ 205 (362)
...|+++...+......+++.+++....+++.+|++.|+++..+.++.+++........ ...... ....+.......+
T Consensus 281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l 360 (468)
T TIGR00788 281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSII 360 (468)
T ss_pred ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHH
Confidence 34589999999999999999999999999999999999999988888877665432110 000000 0111222222333
Q ss_pred HHHHh-hcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy15226 206 YAASY-YGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLG 260 (362)
Q Consensus 206 ~~~~~-~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g 260 (362)
...+. ....+.. .++++..|++.+|+..++.+.+.++|..+++.+++.+.+..|
T Consensus 361 ~~~~~g~~~~~~~-~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 361 AEVLAQLKFMPFL-VLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG 415 (468)
T ss_pred HHHHHHHHHccHH-HHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33444 4555554 889999999999999999999999999999999999998877
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.9e-10 Score=95.51 Aligned_cols=222 Identities=9% Similarity=0.005 Sum_probs=145.6
Q ss_pred hhhhh-hhHHHHHHHHHHHHHHHHHhhccCCChHHHHhcCCHHHHHHHHHhHcCCcccHHHHHHHHHHHHhhccccccch
Q psy15226 10 IGNHV-SYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGY 88 (362)
Q Consensus 10 l~~~~-~Wr~~f~~~~~~~~~~~~~~~~lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (362)
+.++. |||....+=+.++++.++.++. ...|. +.. ..+.+..+-
T Consensus 157 la~~~~gW~~aL~~WAl~allAl~~WlP--q~~r~-----~~~----------------------------~~~~~~~~~ 201 (395)
T COG2807 157 LAQHSGGWRGALGFWALLALLALLIWLP--QALRE-----QAA----------------------------SIATKLVSV 201 (395)
T ss_pred HHHhhccHHHHHHHHHHHHHHHHHHHhh--hcccc-----ccc----------------------------ccccccccc
Confidence 33444 7999999999998888777653 22210 000 001122233
Q ss_pred hhhccCcchhHHHHHHHHHHHHHhhhhHHHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhc-CCchh
Q psy15226 89 LELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDIL-GRKPL 167 (362)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~~ 167 (362)
..++|+|.-|. ..+.+..+...+|....|+|.++.|.|+|..+++...++..+.+.+.++....+.+|. ++|+.
T Consensus 202 ~~vw~~~~aW~-----vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~ 276 (395)
T COG2807 202 RKVWRSPLAWQ-----VTLFMGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPL 276 (395)
T ss_pred cccccCchhHH-----HHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchH
Confidence 45777643333 2233334444578999999999999999999999999999999999999999999965 56777
Q ss_pred hhhhhHhHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhcccccchhhcccCC-CcchhhhhhHHHHHHHHHHHH
Q psy15226 168 SCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELF-PINVRCQASSCASVALAFGSF 246 (362)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~~~~~~~~~ig~~ 246 (362)
.+.....+.++.+.+.+ .+.+..+.. ..+.+.+..+..++....+.+.. .++..+.-.|+.+.++++-++
T Consensus 277 ~~~~~~~~l~G~~G~~~------~P~~~~~lw---~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa 347 (395)
T COG2807 277 VVLALLLMLVGLVGLLL------APGQLPILW---ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAA 347 (395)
T ss_pred HHHHHHHHHHHHHHHHH------hhhhHHHHH---HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHh
Confidence 77777777777776654 112222222 23333333333344445555544 455667778888999999999
Q ss_pred HHHHHHHHHHHhhc-hhHHHHHHHHhhHhHHhhhh
Q psy15226 247 ITTKFHILITKSLG-QHVIFFIYSSVHFCSVVFNY 280 (362)
Q Consensus 247 ~~~~~~~~~~~~~g-~~~~~~~~~~~~~i~~~~~~ 280 (362)
.+|.+.|.+.|..| |..+........++..+..+
T Consensus 348 ~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl 382 (395)
T COG2807 348 FGPWLFGFLHDATGSWSAPLVLLALATLLMLIFGL 382 (395)
T ss_pred hhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHHh
Confidence 99999999998766 66555555555555544443
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.6e-10 Score=102.77 Aligned_cols=162 Identities=12% Similarity=0.060 Sum_probs=101.2
Q ss_pred HHHHHhHHHHh-hhcCCCCCchhHHHHHHHH-HHHHHHHHHHHHhhhcCCchhhh-hhhHhHHHHHHHHHHHHHHhcCCC
Q psy15226 117 TSMITYSSTLL-PKLDNAYFGPDQCILVFMI-IMFLSNFLQAPLMDILGRKPLSC-FSAALGCLLTFSTGLFYLYQGELP 193 (362)
Q Consensus 117 ~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~grr~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 193 (362)
......+|.++ ++.|.+..+.+...+...+ +...+.+.+++ +||+|||+.++ .+.+..+++.....+ .
T Consensus 32 ~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~--------~ 102 (393)
T PRK15011 32 ALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAW--------N 102 (393)
T ss_pred HHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHH--------h
Confidence 44455566655 4569887787877665545 55555555566 99999998754 444444444444333 1
Q ss_pred CcchHHHHHHHHHHHHhhcccccchhhcccCCCcchhh--hhhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHh
Q psy15226 194 NFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRC--QASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSV 271 (362)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~--~~~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~~~~~~ 271 (362)
++.+..++.....+.......+....+..|..+++.|. ...++.+....+|..++|.+.+.+.++.||+..|++.++.
T Consensus 103 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~ 182 (393)
T PRK15011 103 RNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVA 182 (393)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHH
Confidence 12222222222222222333444446667766655453 3346777888999999999999999999999999888887
Q ss_pred hHhHHhhhheeeccCC
Q psy15226 272 HFCSVVFNYFYLMETK 287 (362)
Q Consensus 272 ~~i~~~~~~~~~~e~~ 287 (362)
.++..+..++..||.+
T Consensus 183 ~~~~~~~~~~~~~~~~ 198 (393)
T PRK15011 183 FIVCGVMVWLFLPSMR 198 (393)
T ss_pred HHHHHHHHHhhcCccC
Confidence 7776666656677653
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.27 E-value=8.9e-11 Score=104.33 Aligned_cols=148 Identities=13% Similarity=0.022 Sum_probs=109.3
Q ss_pred HHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcc
Q psy15226 117 TSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQ 196 (362)
Q Consensus 117 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (362)
......+|.+.++.|.+..+.++..+...++..++.++.|+++||+|||+.+..+.....++.+.. . . .+.
T Consensus 17 ~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~-------~-~~~ 87 (355)
T TIGR00896 17 TSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-S-------A-PGT 87 (355)
T ss_pred ccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-H-------h-ccH
Confidence 445667888999999999999999999999999999999999999999999998887766665543 2 1 223
Q ss_pred hHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc--hhHHHHHHHHhhHh
Q psy15226 197 YIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLG--QHVIFFIYSSVHFC 274 (362)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~i 274 (362)
...+....+.+.+.....+.....+.|.+| ++|+++.++.+....+|..+++.+.+.+.++.+ |+..|...+++.++
T Consensus 88 ~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~ 166 (355)
T TIGR00896 88 ALLFAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALL 166 (355)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 333333334444432222233366788886 579999999999999999999999888877653 88777766654443
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.7e-10 Score=102.46 Aligned_cols=177 Identities=11% Similarity=0.023 Sum_probs=114.6
Q ss_pred hhhhHHHHHHhHHHHhhhc--CCCCCc----------hhHHHHHHHHHHHHHHHHHHHHhhhcCC-chhhhhhhHhHHHH
Q psy15226 112 RLGGITSMITYSSTLLPKL--DNAYFG----------PDQCILVFMIIMFLSNFLQAPLMDILGR-KPLSCFSAALGCLL 178 (362)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~--g~~~~~----------~~~~~~~~~~~~~~~~~~~g~l~dr~gr-r~~~~~~~~~~~~~ 178 (362)
.+.+++.+..|.+.+..+. +-++.+ ..+......+...+.+++-.++.+|+|+ |.+...+.++.+++
T Consensus 270 sW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~ 349 (477)
T TIGR01301 270 NWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAIC 349 (477)
T ss_pred HHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 3345566666766665532 222111 1244455556666777788889999985 67768887777777
Q ss_pred HHHHHHHHHHhcC--C---------CCc--chHHHHHHHHHHHHhhcccccchhhcccCCCcc--hhhhhhHHHHHHHHH
Q psy15226 179 TFSTGLFYLYQGE--L---------PNF--QYIPYITTLLYAASYYGIGCLPNILVSELFPIN--VRCQASSCASVALAF 243 (362)
Q Consensus 179 ~~~~~~~~~~~~~--~---------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~--~r~~~~~~~~~~~~i 243 (362)
+....+.....++ . +.. .+..+......+........++++++++..|++ ..|..+|+.|.+..+
T Consensus 350 l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~l 429 (477)
T TIGR01301 350 LAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVI 429 (477)
T ss_pred HHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHH
Confidence 7776543221100 0 000 133333333444444666788899999999854 459999999999999
Q ss_pred HHHHHHHHHHHHHHhhc--hhHHHHHHHHhhHhHHhhhheeeccCCC
Q psy15226 244 GSFITTKFHILITKSLG--QHVIFFIYSSVHFCSVVFNYFYLMETKQ 288 (362)
Q Consensus 244 g~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~i~~~~~~~~~~e~~~ 288 (362)
.+.+.....|.+.+..| ....+.+.++..+++.+...+.+|+++.
T Consensus 430 pQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~~ 476 (477)
T TIGR01301 430 PQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPRV 476 (477)
T ss_pred HHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 99999988888666555 3346667777888888888888887653
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.3e-09 Score=98.92 Aligned_cols=135 Identities=10% Similarity=-0.058 Sum_probs=82.6
Q ss_pred HHHHHHhHHHHhhhc-CCCC---CchhHHHHHHHHHHHHHHHHHHHHhhhcCCchh-hhhhhHhHHHHHHHHHHHHHHhc
Q psy15226 116 ITSMITYSSTLLPKL-DNAY---FGPDQCILVFMIIMFLSNFLQAPLMDILGRKPL-SCFSAALGCLLTFSTGLFYLYQG 190 (362)
Q Consensus 116 ~~~~~~~~~~~~~~~-g~~~---~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~-~~~~~~~~~~~~~~~~~~~~~~~ 190 (362)
++....+.|...... +-+. ...++.....+.+..++.++.|.+..+++|-|. ++++.+++.++.-.++.
T Consensus 326 ~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~------ 399 (599)
T PF06609_consen 326 FFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAA------ 399 (599)
T ss_pred HHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHH------
Confidence 455555556654433 3332 245677888888889999999999998887554 44555555443333322
Q ss_pred CCCCcchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy15226 191 ELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILIT 256 (362)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~ 256 (362)
...++....+....+.+.+.+.........+.-..|++.-|++.|+...+..+|+.++..+...+.
T Consensus 400 ~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~ 465 (599)
T PF06609_consen 400 VRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIF 465 (599)
T ss_pred ccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 112222233333334443332222222355666789999999999999999999988888765433
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.2e-10 Score=115.93 Aligned_cols=144 Identities=11% Similarity=0.044 Sum_probs=97.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhccccc
Q psy15226 137 PDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCL 216 (362)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (362)
.++..+...+..++.++++|+++||+|||+++........+.......... ..+.+..++..++.+.+.....+.
T Consensus 54 ~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~-----~~s~~~l~~~~~l~gi~~a~~~p~ 128 (1140)
T PRK06814 54 VTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFH-----LNSVPLLFAALFLMGIHSALFGPI 128 (1140)
T ss_pred HHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH-----HhhHHHHHHHHHHHHHHHHhhchH
Confidence 455666778889999999999999999999764322222221111111110 123344444444444444555667
Q ss_pred chhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhHhHHhhhheeeccC
Q psy15226 217 PNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFNYFYLMET 286 (362)
Q Consensus 217 ~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~ 286 (362)
..+++.|++|++.|+.++|+.++...+|..++|.++|.+.+..+|+..|+...+..+++ ++..+.+|++
T Consensus 129 ~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 197 (1140)
T PRK06814 129 KYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLG-WLASLFIPKT 197 (1140)
T ss_pred HHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH-HHHHhhCCCC
Confidence 77999999999999999999999999999999999999999999998774444444433 3334555554
|
|
| >KOG0254|consensus | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.8e-10 Score=107.32 Aligned_cols=139 Identities=15% Similarity=0.124 Sum_probs=111.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHh-hccccc
Q psy15226 138 DQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASY-YGIGCL 216 (362)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 216 (362)
++..+...++..++++++|+++|++|||+.++++.+...++.++.+. ..+.....+..++.+.+. ......
T Consensus 92 s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~--------a~~~~~l~~GR~l~G~g~G~~~~~~ 163 (513)
T KOG0254|consen 92 GLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIAL--------APSWYQLIVGRILTGLGVGGASVLA 163 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH--------hhhHHHHHHHHHHhccchhhhhhcc
Confidence 79999999999999999999999999999999999999999999877 234555566666666666 444444
Q ss_pred chhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh--chhHHHHHHHHhhHhHHhhhheeeccCC
Q psy15226 217 PNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSL--GQHVIFFIYSSVHFCSVVFNYFYLMETK 287 (362)
Q Consensus 217 ~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~i~~~~~~~~~~e~~ 287 (362)
+ .+.+|..|++.||...+..+....+|..++ ++.+...++. +||..+.+..+.+++..+. .++.||+.
T Consensus 164 p-iy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pesp 233 (513)
T KOG0254|consen 164 P-VYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPESP 233 (513)
T ss_pred h-hhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCCh
Confidence 4 899999999999999999988888777777 5555665553 8998888777777777666 67888863
|
|
| >KOG3764|consensus | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.7e-11 Score=104.68 Aligned_cols=150 Identities=14% Similarity=0.116 Sum_probs=125.2
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHh
Q psy15226 131 DNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASY 210 (362)
Q Consensus 131 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (362)
+-+..+.+++.....+.+.+.+++.|.+.||+|+|..+++|...+..+.+++++ .++....++...+-+.+.
T Consensus 102 ~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFaf--------g~sy~~l~vAR~LQgvgs 173 (464)
T KOG3764|consen 102 DRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAF--------GNSYPMLFVARSLQGVGS 173 (464)
T ss_pred cccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHH--------cchhHHHHHHHHHhhhhH
Confidence 445577889999999999999999999999999999999999999999999887 334445555566666666
Q ss_pred hcccccchhhcccCCCcch-hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhHhHHhhhheeeccCCC
Q psy15226 211 YGIGCLPNILVSELFPINV-RCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFNYFYLMETKQ 288 (362)
Q Consensus 211 ~~~~~~~~~~~~e~~p~~~-r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~ 288 (362)
........+++++.+|.+. |++++|+.-.+-.+|-.++|..+|.+.+..|.+.+|++++.++++...+.++.++.++.
T Consensus 174 A~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~ 252 (464)
T KOG3764|consen 174 AFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEM 252 (464)
T ss_pred HHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCcccc
Confidence 3333344489999999776 79999999999999999999999999999999999999999999988887666665443
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.22 E-value=6.2e-10 Score=114.07 Aligned_cols=117 Identities=14% Similarity=0.100 Sum_probs=87.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhccccc
Q psy15226 137 PDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCL 216 (362)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (362)
.++..+++.++..++++++|+++||+|||++++.+.++.++..++..+... ....+..++..++.+.+.....+.
T Consensus 49 ~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~r~l~G~~~~~~~~~ 123 (1146)
T PRK08633 49 TAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYY-----LGWFWLAFAVTFLLGAQSAIYSPA 123 (1146)
T ss_pred HHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHH-----HccHHHHHHHHHHHHHHHHhhchH
Confidence 456677888889999999999999999999998887766555554433211 112333334344444433445556
Q ss_pred chhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15226 217 PNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKS 258 (362)
Q Consensus 217 ~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~ 258 (362)
..++++|++|++.|+.++|+......+|..+++.+++.+.+.
T Consensus 124 ~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 124 KYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred HHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 568999999999999999999999999999999999988775
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.3e-10 Score=102.60 Aligned_cols=181 Identities=14% Similarity=0.144 Sum_probs=124.0
Q ss_pred hhccCcchhHHHHHHHHHHHHHhhhhHHHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhh
Q psy15226 90 ELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSC 169 (362)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~ 169 (362)
..+|+|.++ .++.+-.+..+.. .....-.+.+..+..-|+...+.+.....+..++.++++|.++||++||++++
T Consensus 5 aplr~~~Fr-~lw~a~~iS~lG~----~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili 79 (524)
T PF05977_consen 5 APLRNRNFR-RLWIAQLISNLGD----WMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILI 79 (524)
T ss_pred ccccCchHH-HHHHHHHHHHHHH----HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHH
Confidence 345654443 3344333333322 33333344455555555566777888888899999999999999999999999
Q ss_pred hhhHhHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHH
Q psy15226 170 FSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITT 249 (362)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~ 249 (362)
.+-+..++..+.+.+..... ..+.+..++..++.+.+.....|.-.+.+.|+.|+++...+.++.+...++...+||
T Consensus 80 ~~~~~~~~~~~~L~~l~~~~---~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGP 156 (524)
T PF05977_consen 80 LSQLLRALVALLLAVLAFFG---LLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGP 156 (524)
T ss_pred HHHHHHHHHHHHHHHHHHhC---cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccc
Confidence 98887776665555433221 223334344344444433444566668999999999999999999999999999999
Q ss_pred HHHHHHHHhhchhHHHHHHHHhhHhHHhh
Q psy15226 250 KFHILITKSLGQHVIFFIYSSVHFCSVVF 278 (362)
Q Consensus 250 ~~~~~~~~~~g~~~~~~~~~~~~~i~~~~ 278 (362)
.++|.+....|....|.+-++..++....
T Consensus 157 algG~Lva~~G~~~~f~inalsfl~~i~~ 185 (524)
T PF05977_consen 157 ALGGILVAFFGAAAAFLINALSFLISILA 185 (524)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999889888888776665554333
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >KOG2533|consensus | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.3e-10 Score=105.65 Aligned_cols=152 Identities=14% Similarity=0.048 Sum_probs=112.5
Q ss_pred hhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH
Q psy15226 128 PKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYA 207 (362)
Q Consensus 128 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (362)
++.+....+-+...+++.++.+++.++++.+.||++-.+.+....+...+..++... .++.+..++..++.+
T Consensus 74 edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~--------~~s~~~~ialr~llG 145 (495)
T KOG2533|consen 74 EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAA--------VHSFPGLIALRFLLG 145 (495)
T ss_pred cccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHH--------HhhhHHHHHHHHHHH
Confidence 444566667789999999999999999999999999544444433333333322211 123344444455555
Q ss_pred HHh-hcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHH------hhchhHHHHHHHHhhHhHHhhhh
Q psy15226 208 ASY-YGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITK------SLGQHVIFFIYSSVHFCSVVFNY 280 (362)
Q Consensus 208 ~~~-~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~------~~g~~~~~~~~~~~~~i~~~~~~ 280 (362)
... .++.+.. .+++.++.+++|+..+|+.+....+|+++++.+...+.+ ..||++.|++-+++.++..++++
T Consensus 146 l~es~~wP~~~-~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f 224 (495)
T KOG2533|consen 146 LFESGGWPGVV-AILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVF 224 (495)
T ss_pred HHhcccchHHH-HHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEE
Confidence 555 5555554 899999999999999999999999999999999877532 46899999999999999988888
Q ss_pred eeeccCCC
Q psy15226 281 FYLMETKQ 288 (362)
Q Consensus 281 ~~~~e~~~ 288 (362)
+++|+...
T Consensus 225 ~~lp~~P~ 232 (495)
T KOG2533|consen 225 FFLPDNPS 232 (495)
T ss_pred EEecCChh
Confidence 89987644
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.20 E-value=2e-10 Score=103.68 Aligned_cols=167 Identities=9% Similarity=0.017 Sum_probs=104.4
Q ss_pred hHHHHHHhHHHHhhh-cCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCC
Q psy15226 115 GITSMITYSSTLLPK-LDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELP 193 (362)
Q Consensus 115 ~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (362)
+......++|.++.+ .|.+..+.+...+...+...++.++.|+++||+|||+.++.+....+++......+...+ ...
T Consensus 17 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 95 (396)
T TIGR00882 17 IMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGP-LLQ 95 (396)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhh-HHH
Confidence 345566677777765 599988999999999999999999999999999999998877666554433321111000 000
Q ss_pred CcchH-HHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhh
Q psy15226 194 NFQYI-PYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVH 272 (362)
Q Consensus 194 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 272 (362)
..... ..+.....+.+.....+....+..|..+ .++...+.....+.+|..++|.+.+.+.+ .+|+.+|++.+++.
T Consensus 96 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~ 172 (396)
T TIGR00882 96 SNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFA 172 (396)
T ss_pred HHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--hcccccchhhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHH
Confidence 00111 1111222222222222333345555322 33456677777888999999999887754 68999998888777
Q ss_pred HhHHhhhheeecc
Q psy15226 273 FCSVVFNYFYLME 285 (362)
Q Consensus 273 ~i~~~~~~~~~~e 285 (362)
++..++.+...||
T Consensus 173 ~~~~~~~~~~~~~ 185 (396)
T TIGR00882 173 LILMLLLMFAKPK 185 (396)
T ss_pred HHHHHHHHHhCCC
Confidence 7665554333333
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=5.1e-10 Score=100.50 Aligned_cols=148 Identities=11% Similarity=0.050 Sum_probs=102.0
Q ss_pred HHHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCch----hhhhhhHhHHHHHHHHHHHHHHhcC
Q psy15226 116 ITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKP----LSCFSAALGCLLTFSTGLFYLYQGE 191 (362)
Q Consensus 116 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~----~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (362)
......++|.++++.|.+..+.++..+...+...++.++.|+++||+|||. .+.+... +.......
T Consensus 20 ~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~---~~~~~~~~------- 89 (382)
T PRK11128 20 YGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTL---LFAVAFWF------- 89 (382)
T ss_pred HHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHH---HHHHHHHH-------
Confidence 456677888899999999999999999999999999999999999999943 2221111 11111111
Q ss_pred CCCcchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHh
Q psy15226 192 LPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSV 271 (362)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~~~~~~ 271 (362)
..++.+..++...+.+.+.....+...++..+. .++|+.+.+.....+.+|..++|.+++.+.++.||+..|++.++.
T Consensus 90 ~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~ 167 (382)
T PRK11128 90 GAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAG 167 (382)
T ss_pred hcccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHH
Confidence 122333333333333333333344444555554 356788888888899999999999999999999999988877655
Q ss_pred hHhH
Q psy15226 272 HFCS 275 (362)
Q Consensus 272 ~~i~ 275 (362)
.++.
T Consensus 168 ~~~~ 171 (382)
T PRK11128 168 VASM 171 (382)
T ss_pred HHHH
Confidence 4444
|
|
| >KOG2504|consensus | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.2e-10 Score=105.05 Aligned_cols=180 Identities=9% Similarity=0.044 Sum_probs=137.2
Q ss_pred chhHHHHHHHHHHHHHhhhhHHHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhH
Q psy15226 96 SNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALG 175 (362)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~ 175 (362)
.+-|.+..+.++.........+.+..+.+.+.++++.+..+..+..++......+..++.+.+.||+|.|.+.+.|.++.
T Consensus 42 G~gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~ 121 (509)
T KOG2504|consen 42 GWGWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVA 121 (509)
T ss_pred CeeeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHH
Confidence 33344444444444333333455556778888888888778999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHh-hcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy15226 176 CLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASY-YGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHIL 254 (362)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~ 254 (362)
.++.++..+ ..+.+...+....+.+.+. ..+.|.. ..+..+| .++|+.+.|+......+|.++-|.+...
T Consensus 122 ~~g~~lssF-------~~~i~~l~lt~gvi~G~G~~~~~~pai-viv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~~ 192 (509)
T KOG2504|consen 122 ALGLLLSSF-------ATSLWQLYLTFGVIGGLGLGLIYLPAV-VILGTYF-EKKRALATGIAVSGTGVGTVVFPPLLKY 192 (509)
T ss_pred HHHHHHHHH-------HhhHHHHHHHHHHHhhccchhhhcchh-hhhhhHh-HHHHHHHHhhhhccCCcceeeHHHHHHH
Confidence 999988877 2233344444455555555 5556665 5666666 5689999999999999999999999999
Q ss_pred HHHhhchhHHHHHHHHhhHhHHhhhheeec
Q psy15226 255 ITKSLGQHVIFFIYSSVHFCSVVFNYFYLM 284 (362)
Q Consensus 255 ~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 284 (362)
+.+..||+..+++.+.+.+-..+......|
T Consensus 193 l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp 222 (509)
T KOG2504|consen 193 LLSKYGWRGALLIFGGISLNVLVAGALLRP 222 (509)
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999998888766666555555
|
|
| >KOG0569|consensus | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.6e-10 Score=103.76 Aligned_cols=142 Identities=16% Similarity=0.191 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHh-hcccccc
Q psy15226 139 QCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASY-YGIGCLP 217 (362)
Q Consensus 139 ~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 217 (362)
...+...+++++|++..++++||+|||..+..+.++..++.++..+... .+.....++..++.+... ......+
T Consensus 64 ~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~-----~~~~e~li~GR~i~Gl~~gl~~~~~p 138 (485)
T KOG0569|consen 64 LIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKS-----APSFEMLILGRLIVGLACGLSTGLVP 138 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHH-----hhhHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4567788999999999999999999999988888887777777665322 123444455555555555 4445555
Q ss_pred hhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHH-HHHHH-hhchhHHHHHHHHhhHhHHhhhheeeccCC
Q psy15226 218 NILVSELFPINVRCQASSCASVALAFGSFITTKFH-ILITK-SLGQHVIFFIYSSVHFCSVVFNYFYLMETK 287 (362)
Q Consensus 218 ~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~-~~~~~-~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~ 287 (362)
.++.|..|.+.||....+......+|..++..++ ..+.+ ...|...+....+..++..+. ..+.||+.
T Consensus 139 -myl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~-l~~~PESP 208 (485)
T KOG0569|consen 139 -MYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLAL-LPFLPESP 208 (485)
T ss_pred -HHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHH-HhcCCCCc
Confidence 8999999999999998888888888888885544 33332 234776666666666666444 47889974
|
|
| >KOG0252|consensus | Back alignment and domain information |
|---|
Probab=99.18 E-value=7.3e-10 Score=96.53 Aligned_cols=153 Identities=13% Similarity=0.001 Sum_probs=97.2
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHh-
Q psy15226 132 NAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASY- 210 (362)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 210 (362)
++....+.+..+..++.++|+++.|++.||+|||+++...++++.++.+++++.... +.....+..++...+..+.
T Consensus 81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~---~~~~~~m~~L~~~R~~LGiG 157 (538)
T KOG0252|consen 81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGT---TSPLGVMMTLCFFRFLLGIG 157 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCC---CCCcchhhHHHHHHHHhhcc
Confidence 344455688888999999999999999999999999999999999999866551110 1111222233333333333
Q ss_pred -hcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHH---HHHHHh------------hchhHHHHHHHHhhHh
Q psy15226 211 -YGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFH---ILITKS------------LGQHVIFFIYSSVHFC 274 (362)
Q Consensus 211 -~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~---~~~~~~------------~g~~~~~~~~~~~~~i 274 (362)
++-.|+..+.++|....+.||+-.+....++..|...+..+. ....++ .=||..+.+.++..+
T Consensus 158 IGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~- 236 (538)
T KOG0252|consen 158 IGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPAL- 236 (538)
T ss_pred ccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHH-
Confidence 666788878899999999999988876555544443333322 222221 126655544444333
Q ss_pred HHhhhheeeccCCC
Q psy15226 275 SVVFNYFYLMETKQ 288 (362)
Q Consensus 275 ~~~~~~~~~~e~~~ 288 (362)
.....-+.+|||++
T Consensus 237 ~~ly~Rl~M~Et~~ 250 (538)
T KOG0252|consen 237 LVLYFRLKMPETAR 250 (538)
T ss_pred HHHHhhhcCCcchh
Confidence 33444456788764
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.18 E-value=6.4e-10 Score=99.86 Aligned_cols=148 Identities=11% Similarity=0.025 Sum_probs=102.9
Q ss_pred hHHHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHh-HHHHHHHHHHHHHHhcCCC
Q psy15226 115 GITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAAL-GCLLTFSTGLFYLYQGELP 193 (362)
Q Consensus 115 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 193 (362)
++.....++|.++++.|.+..+.++..+...+...+++++.|.++||+||+......... ..+..+.+.. ..
T Consensus 19 ~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~~~-------~~ 91 (382)
T TIGR00902 19 AYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAAFSA-------GA 91 (382)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH-------hh
Confidence 346677788899999999999999999999999999999999999999985432211111 1111111111 11
Q ss_pred CcchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHh
Q psy15226 194 NFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSV 271 (362)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~~~~~~ 271 (362)
++.+..++...+.+.+.....+...++..|. .++|++..|.....+.+|..++|.+.+.+.++.||+..|.+....
T Consensus 92 ~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~ 167 (382)
T TIGR00902 92 HNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAG 167 (382)
T ss_pred hhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHH
Confidence 2333333333334433333445554565543 567899999999999999999999999999999999988776655
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.17 E-value=1e-09 Score=98.72 Aligned_cols=124 Identities=18% Similarity=0.223 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcc-------hHHHHHHHHHHHHhhcccccch
Q psy15226 146 IIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQ-------YIPYITTLLYAASYYGIGCLPN 218 (362)
Q Consensus 146 ~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~ 218 (362)
+...+++++.|+++||+|||+++..+.++..++.+.+.+ ..+.. ...+....+.+.+.....+...
T Consensus 46 ~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~ 118 (394)
T TIGR00883 46 LARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGL-------LPSYATIGIWAPILLLLARLIQGFSLGGEWGGAA 118 (394)
T ss_pred HHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhh-------CCChhhhHHHHHHHHHHHHHHHHhhccccccccH
Confidence 344578899999999999999999999988888877665 11111 0122223333333333334445
Q ss_pred hhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHH--------HhhchhHHHHHHHHhhHhHH
Q psy15226 219 ILVSELFPINVRCQASSCASVALAFGSFITTKFHILIT--------KSLGQHVIFFIYSSVHFCSV 276 (362)
Q Consensus 219 ~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~--------~~~g~~~~~~~~~~~~~i~~ 276 (362)
.++.|.+|+++|+...++.+....+|..+++.+.+.+. +..+|+..+.+.+++.+++.
T Consensus 119 ~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 184 (394)
T TIGR00883 119 LYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGL 184 (394)
T ss_pred HHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999888766543 35689988887666655543
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.4e-10 Score=98.82 Aligned_cols=176 Identities=17% Similarity=0.129 Sum_probs=128.3
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHhHHHHhhh-cC----CCCCchhHHHHHHHHHHHHHHHHHHHHhhhc-CCchhhhhhh
Q psy15226 99 RAFTLVMAASLFQRLGGITSMITYSSTLLPK-LD----NAYFGPDQCILVFMIIMFLSNFLQAPLMDIL-GRKPLSCFSA 172 (362)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g----~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~~ 172 (362)
+.+...+..-+...++ +|++..-+..|+.. .+ +++.++.-....+....-+..+++|+++||+ |+|+.+.++.
T Consensus 21 r~l~~if~vE~WERFs-yYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGa 99 (498)
T COG3104 21 RGLYLIFFVELWERFS-YYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGA 99 (498)
T ss_pred chHHHHHHHHHHHHHh-hhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 4555556656655554 45555444444432 24 8877777777888888888999999999996 9999999999
Q ss_pred HhHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhcccccchhhcccCCCcch--hhhhhHHHHHHHHHHHHHHHH
Q psy15226 173 ALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINV--RCQASSCASVALAFGSFITTK 250 (362)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~--r~~~~~~~~~~~~ig~~~~~~ 250 (362)
++.+++.++++. ..........+.+.....+.+..-+...+++.|++|+++ |..+.++.++..++|+.++|.
T Consensus 100 il~~iGh~~L~~------~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~ 173 (498)
T COG3104 100 ILMAIGHLVLAI------SSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPI 173 (498)
T ss_pred HHHHHHHHHHhc------cccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHH
Confidence 999999999877 110223333333443334434444555588999997543 677888888899999999999
Q ss_pred HHHHHHHhhchhHHHHHHHHhhHhHHhhhhe
Q psy15226 251 FHILITKSLGQHVIFFIYSSVHFCSVVFNYF 281 (362)
Q Consensus 251 ~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 281 (362)
+.+++.++.||+..|...++-+.++.+..++
T Consensus 174 i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~ 204 (498)
T COG3104 174 ITGLLAINYGWHVGFGLAAVGMIIGLVIFLL 204 (498)
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998888888666544
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.1e-09 Score=90.73 Aligned_cols=174 Identities=16% Similarity=0.135 Sum_probs=117.0
Q ss_pred chhhhccCcchhHHHHHHHHHHHHHhhhhHHHHHHhHHHHhhh-cCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q psy15226 87 GYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPK-LDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRK 165 (362)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr 165 (362)
...+++++|..+.-.+..+ +.... -.....|++.++.+ .|.+..++....+....+.++|.+++.++..|+...
T Consensus 228 ~~~~l~~~~~~~~gvl~~F-lYVG~----Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~ 302 (422)
T COG0738 228 GLSSLFQNKHLRLGVLAIF-LYVGA----EVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPE 302 (422)
T ss_pred hHHHHHhChHHHHHHHHHH-HHHhH----HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH
Confidence 4677888754443333322 22222 24566778888888 588888888999999999999999999999999998
Q ss_pred hhhhhhhHhHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHH
Q psy15226 166 PLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGS 245 (362)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~ 245 (362)
+.+.+..+...+.++...+ . +....+....+.+.......|..++...+..|. +- ...|..-....+|+
T Consensus 303 k~Laf~a~~~ill~~~~~l-------~--~g~v~~~~l~~ig~F~simfPTIfslal~~l~~-~t-s~~s~~l~maivGG 371 (422)
T COG0738 303 KYLAFYALIAILLLLAVAL-------I--GGVVALYALFLIGLFNSIMFPTIFSLALKNLGE-HT-SVGSGLLVMAIVGG 371 (422)
T ss_pred HHHHHHHHHHHHHHHHHHH-------h--cChHHHHHHHHHHHHhHHHHHHHHHHHHhccCc-cc-cccceeeeeheecc
Confidence 8888877666666655555 1 223333333333333344445556888888883 32 33344455677899
Q ss_pred HHHHHHHHHHHHhhchhHHHHHHHHhhHhHH
Q psy15226 246 FITTKFHILITKSLGQHVIFFIYSSVHFCSV 276 (362)
Q Consensus 246 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~ 276 (362)
++.|.+.|++.|+.|....+.....+|.+..
T Consensus 372 AiiP~l~G~i~d~~g~~~~~~~~pllc~lyV 402 (422)
T COG0738 372 AIIPPLQGVIADMFGIQLTFLIVPLLCYLYV 402 (422)
T ss_pred hHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 9999999999999998766664555554443
|
|
| >KOG1330|consensus | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.3e-10 Score=101.39 Aligned_cols=211 Identities=14% Similarity=0.014 Sum_probs=109.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhhc-cCCChHHHHhcCCHHHHHHHHHhHcCCcccHHHHHHHHHHHHhhcccccc---chhh
Q psy15226 15 SYNSLNIALSILPVIFFILFSF-VPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKT---GYLE 90 (362)
Q Consensus 15 ~Wr~~f~~~~~~~~~~~~~~~~-lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 90 (362)
.|||.|...+++++++.++.++ ++|.+| |..||. .+++. ..++... +.+.
T Consensus 186 ~Wr~af~~~avl~vi~~~L~~~f~~eP~r-----ga~~~~-------~~~~~--------------~~~~~ts~~kDl~~ 239 (493)
T KOG1330|consen 186 WWRWAFRGSAVLGVIVGLLVFLFVREPER-----GARDEV-------DGENK--------------MVKPFTSVWKDLKV 239 (493)
T ss_pred ceEEEEEeehHHHHHHHHHHHhhccCccc-----cccccc-------ccCCc--------------CCCCccchHHHHHH
Confidence 3999999999999998887666 777753 111111 00000 0011111 2222
Q ss_pred hccCcchhHHHHHHHHHHHHHhhhhHHHHHHhHHHHh----hhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCc-
Q psy15226 91 LLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLL----PKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRK- 165 (362)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr- 165 (362)
..+++......+-.....+.. ..+..|.|.+. +-.|.+.....+...+...++.+|.+++|.++||+.|+
T Consensus 240 l~~~~v~v~~sl~~~a~~fv~-----Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~ 314 (493)
T KOG1330|consen 240 LAKIKVFVLSSLGIIAAQFVI-----GSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIF 314 (493)
T ss_pred HHccCceeeehHHHHHHHHhc-----cccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhc
Confidence 333323222222222222211 23333344333 33366656677788888999999999999999995321
Q ss_pred ---hhhhhhhHhH---HHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHh-hcccccchhhcccCCCcchhhhhhHHHH
Q psy15226 166 ---PLSCFSAALG---CLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASY-YGIGCLPNILVSELFPINVRCQASSCAS 238 (362)
Q Consensus 166 ---~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~~p~~~r~~~~~~~~ 238 (362)
.......+.. +...+.+.++. .. ......+..++..++..... ..+.+.. -+..|+.|++.|.++.++-.
T Consensus 315 ~~~~~~~~~q~~~~~g~~~s~~~L~~~-~~-~~~~s~~~~~il~~~g~~~~~~~~a~n~-~i~l~vV~p~~Rt~a~a~~~ 391 (493)
T KOG1330|consen 315 PNSGTLRASQLSAALGAPLSIPFLFLF-PA-FTSSSMIFGLILFLVGETISWFNWATNN-PIFLEVVPPSRRTTAYALDT 391 (493)
T ss_pred ccccchhHHHHHHhhhhhHHHHHHHHH-Hh-hhhHHHHHHHHHHHHHHHHHhccccccc-ceeeEecCcccccHHHHHHH
Confidence 1111111111 11111111111 11 11122222222222222222 4444444 67789999999999999987
Q ss_pred HHH-HHHHHHHHHHHHHHHHhh
Q psy15226 239 VAL-AFGSFITTKFHILITKSL 259 (362)
Q Consensus 239 ~~~-~ig~~~~~~~~~~~~~~~ 259 (362)
.+. ..|.+-+|++.|.+.++.
T Consensus 392 ~~~h~fgd~~~p~ivGilsd~l 413 (493)
T KOG1330|consen 392 VFEHIFGDAASPYIVGILSDKL 413 (493)
T ss_pred HHHHHhccCCCcceehhHHHHh
Confidence 654 456666776888888763
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.4e-09 Score=97.98 Aligned_cols=166 Identities=14% Similarity=0.107 Sum_probs=108.4
Q ss_pred HHHHHhHHHHhh-hcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhh----cCCch-hhhhhhHhHHHHHHHHHHHHHHhc
Q psy15226 117 TSMITYSSTLLP-KLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDI----LGRKP-LSCFSAALGCLLTFSTGLFYLYQG 190 (362)
Q Consensus 117 ~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~grr~-~~~~~~~~~~~~~~~~~~~~~~~~ 190 (362)
.....|++.++. +.|.++...+...++..+...+..++.|+++|| +|||+ .++.+....+++.+.+.. .+
T Consensus 16 ~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~---~~- 91 (437)
T TIGR00792 16 AIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFT---TP- 91 (437)
T ss_pred HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHh---CC-
Confidence 344455555555 459998999999999999999999999999998 57744 566676777766655433 11
Q ss_pred CCCCc--chHHHHHHHHHHHHhhcccccchhhcccCC-CcchhhhhhHHHHHHHHHHHHHHHHHHHHHHH-------hhc
Q psy15226 191 ELPNF--QYIPYITTLLYAASYYGIGCLPNILVSELF-PINVRCQASSCASVALAFGSFITTKFHILITK-------SLG 260 (362)
Q Consensus 191 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~-------~~g 260 (362)
..... .........++..+.........++..|.. ++++|++..++.+.+..+|+.+++.+.+.+.. ..+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g 171 (437)
T TIGR00792 92 DFSATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFG 171 (437)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccc
Confidence 00001 111122223333333222222236778887 56889999999888888888777766655543 357
Q ss_pred hhHHHHHHHHhhHhHHhhhheeeccC
Q psy15226 261 QHVIFFIYSSVHFCSVVFNYFYLMET 286 (362)
Q Consensus 261 ~~~~~~~~~~~~~i~~~~~~~~~~e~ 286 (362)
|+..+.+.+++.++..++.++..||+
T Consensus 172 ~~~~~~i~~~l~~~~~~~~~~~~~e~ 197 (437)
T TIGR00792 172 WFMFALVLALIGVVSLIICFFGTKER 197 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEec
Confidence 88888888888777766665666664
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.9e-12 Score=116.20 Aligned_cols=144 Identities=19% Similarity=0.221 Sum_probs=105.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCC-CcchHHHHHHHHHHHHhhcccc
Q psy15226 137 PDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELP-NFQYIPYITTLLYAASYYGIGC 215 (362)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 215 (362)
..+..+...++..+|++++|+++||+|||+.+..+..+..++.++..+ .+. .+.....+...+.+.+.++..+
T Consensus 48 ~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~~~~R~~~G~~~g~~~~ 121 (451)
T PF00083_consen 48 SSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAF------APSYNNFWMLLIGRFLIGFGIGGAYV 121 (451)
T ss_pred HHHHHHHHHhhhcccccccccccccccccccccccccccccccccccc------cccccccccccccccccccccccccc
Confidence 457788899999999999999999999999999999999999888766 111 1334444444455544444445
Q ss_pred cchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHH---hhchhHHHHHHHHhhHhHHhhhheeeccCC
Q psy15226 216 LPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITK---SLGQHVIFFIYSSVHFCSVVFNYFYLMETK 287 (362)
Q Consensus 216 ~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~ 287 (362)
....++.|..|++.|+...++.+....+|..++..+...... ..+||..+....+..++..+ ...++||+.
T Consensus 122 ~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~-~~~~~pESP 195 (451)
T PF00083_consen 122 VSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLL-LRFFLPESP 195 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccc
Confidence 555899999999999999999888888887777666533322 23488777776666655543 447789873
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.07 E-value=6.5e-09 Score=93.67 Aligned_cols=173 Identities=13% Similarity=-0.014 Sum_probs=110.9
Q ss_pred HHHHhhhhHHHHHHhHHHHhhhcCCCCCchhHH--HHHHHHHHHHHHHHH-HHHhhhcCCchhhhhhhHhH-HHHHHHHH
Q psy15226 108 SLFQRLGGITSMITYSSTLLPKLDNAYFGPDQC--ILVFMIIMFLSNFLQ-APLMDILGRKPLSCFSAALG-CLLTFSTG 183 (362)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~-g~l~dr~grr~~~~~~~~~~-~~~~~~~~ 183 (362)
.++.+...+.....+.|.++++.|.+..+.+.. .....+...+.+++. ++.+||.|||+..++..... ..+...+.
T Consensus 9 ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~ 88 (390)
T TIGR02718 9 LYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASLA 88 (390)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHHHH
Confidence 334444445677789999999999998888876 356677787788877 44789999998865554332 22222222
Q ss_pred HHHHHhcCCCCc-chHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhchh
Q psy15226 184 LFYLYQGELPNF-QYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQH 262 (362)
Q Consensus 184 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g~~ 262 (362)
.. ..... ....+..............+..-.+..|..+++.++...+.......+|..+++...+.+.++.||+
T Consensus 89 ~~-----~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~ 163 (390)
T TIGR02718 89 LV-----GPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQR 163 (390)
T ss_pred cC-----CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH
Confidence 10 01111 1111221111111113333344456777778777787777777777889999998888899999999
Q ss_pred HHHHHHHHhhHhHHhhhheeecc
Q psy15226 263 VIFFIYSSVHFCSVVFNYFYLME 285 (362)
Q Consensus 263 ~~~~~~~~~~~i~~~~~~~~~~e 285 (362)
..|++.+++.++..+..++..|+
T Consensus 164 ~~f~~~a~l~~~~~~~~~~~~~~ 186 (390)
T TIGR02718 164 PAFLLVACVPLASLVCVLWLKDR 186 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999988877765555444333
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.5e-08 Score=89.70 Aligned_cols=148 Identities=11% Similarity=-0.027 Sum_probs=95.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhcCC-----chhh--hhhhHhHHHHHHHHHHHHHHhc-CCCCcchHHHHHHHHHHH
Q psy15226 137 PDQCILVFMIIMFLSNFLQAPLMDILGR-----KPLS--CFSAALGCLLTFSTGLFYLYQG-ELPNFQYIPYITTLLYAA 208 (362)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~g~l~dr~gr-----r~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 208 (362)
..+..++..+..++..++..++-.+.+| +... .+|.++.+++....++...... ....+.+..+....+.+.
T Consensus 314 ~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ 393 (475)
T TIGR00924 314 VIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTL 393 (475)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence 5567777777777776665543333333 3333 5667777666666543211110 112234444444445554
Q ss_pred HhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhHhHHhhhheeec
Q psy15226 209 SYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFNYFYLM 284 (362)
Q Consensus 209 ~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 284 (362)
+-....|..++++.|..|++.||+.+|+......+|..+++.+.....+..++...+...++.+++..++.++..|
T Consensus 394 ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (475)
T TIGR00924 394 GELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP 469 (475)
T ss_pred HHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566677999999999999999999999999999999998877766667777777777776666665544433
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.5e-08 Score=93.47 Aligned_cols=145 Identities=11% Similarity=-0.014 Sum_probs=90.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhcCCchh-------hhhhhHhHHHHHHHHHHHH--HHhcCCCCcchHHHHHHHHHH
Q psy15226 137 PDQCILVFMIIMFLSNFLQAPLMDILGRKPL-------SCFSAALGCLLTFSTGLFY--LYQGELPNFQYIPYITTLLYA 207 (362)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~-------~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 207 (362)
..+......+..++.+++.+++.||+++|+. +.+|.++.+++.+.++... ....+...+.+..+....+.+
T Consensus 311 ~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g 390 (489)
T PRK10207 311 PVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQS 390 (489)
T ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHH
Confidence 3455555666777888889999999999874 6667777666654432211 111011122333333444444
Q ss_pred HHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHH----------hhchhHHHHHHHHhhHhHHh
Q psy15226 208 ASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITK----------SLGQHVIFFIYSSVHFCSVV 277 (362)
Q Consensus 208 ~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~----------~~g~~~~~~~~~~~~~i~~~ 277 (362)
.+.....+....++.+..|++.++.++|+.+....+|+.++..+...... ...+.+.|...++..+++.+
T Consensus 391 ~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v 470 (489)
T PRK10207 391 LGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAV 470 (489)
T ss_pred HHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHH
Confidence 44444455555888899999999999999999999999998877754421 01134456666666655555
Q ss_pred hhhe
Q psy15226 278 FNYF 281 (362)
Q Consensus 278 ~~~~ 281 (362)
+.+.
T Consensus 471 ~~~~ 474 (489)
T PRK10207 471 VMAL 474 (489)
T ss_pred HHHH
Confidence 5433
|
|
| >KOG4686|consensus | Back alignment and domain information |
|---|
Probab=99.00 E-value=5.1e-09 Score=85.67 Aligned_cols=153 Identities=16% Similarity=0.059 Sum_probs=104.2
Q ss_pred HHHHHhHHHHhhh-cCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHH-HHHHHHHHHHHHhcCCCC
Q psy15226 117 TSMITYSSTLLPK-LDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGC-LLTFSTGLFYLYQGELPN 194 (362)
Q Consensus 117 ~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 194 (362)
..+....|.++++ +|+|+..++.+.+.......+.+++.|.++|++|++-..+.+..+.. .+-..+.+ +..
T Consensus 281 fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F-------t~l 353 (459)
T KOG4686|consen 281 FPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF-------TFL 353 (459)
T ss_pred HHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh-------hhc
Confidence 3444455655555 59998899999999999999999999999999999987766544433 33333333 111
Q ss_pred cchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc---hhHH-HHHHHH
Q psy15226 195 FQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLG---QHVI-FFIYSS 270 (362)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g---~~~~-~~~~~~ 270 (362)
+++ ..+...+..+....+..|..++-+.|.++-|++.|.++...++|-++.|.+.|.+.++-| |--. |+.++.
T Consensus 354 sPy---~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~ 430 (459)
T KOG4686|consen 354 SPY---TSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGL 430 (459)
T ss_pred cHH---HHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHH
Confidence 222 223333333322233456777888899999999999999999999999999999988765 2223 344444
Q ss_pred hhHhHHhhh
Q psy15226 271 VHFCSVVFN 279 (362)
Q Consensus 271 ~~~i~~~~~ 279 (362)
+.+....+.
T Consensus 431 ~aL~svgil 439 (459)
T KOG4686|consen 431 MALTSVGIL 439 (459)
T ss_pred HHHHHHHHH
Confidence 455444443
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.7e-08 Score=85.00 Aligned_cols=136 Identities=13% Similarity=-0.017 Sum_probs=103.6
Q ss_pred HHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcc
Q psy15226 117 TSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQ 196 (362)
Q Consensus 117 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (362)
.......|.+.+.++.+..+++.+...+..+..++++..+++.+|+|+|+-++.++.+++++..++.-.. .....
T Consensus 30 ~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa-----~~~~y 104 (422)
T COG0738 30 CLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAA-----SSKSY 104 (422)
T ss_pred hcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhh-----hhhhH
Confidence 4445667888888899999999999999999999999999999999999999999999999988763200 01122
Q ss_pred hHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy15226 197 YIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITK 257 (362)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~ 257 (362)
...+..+++.+.+..........+++.+.|++....-+.+.+.++.+|++++|.+++.+..
T Consensus 105 ~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lil 165 (422)
T COG0738 105 GFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLIL 165 (422)
T ss_pred HHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 2222222333333233334445788888888878888999999999999999999998876
|
|
| >KOG0253|consensus | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.5e-08 Score=84.81 Aligned_cols=155 Identities=12% Similarity=0.079 Sum_probs=111.3
Q ss_pred hHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcchHHHH
Q psy15226 122 YSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYI 201 (362)
Q Consensus 122 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (362)
..|..-...|.+..+..++......+..+++..+|.++|++|||+..........+...+-+. ..+.....+
T Consensus 100 i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~--------spnf~~L~~ 171 (528)
T KOG0253|consen 100 ILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGA--------SPNFASLCV 171 (528)
T ss_pred HHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcC--------CCCeehhhH
Confidence 344444445888778888999999999999999999999999999888877777666655433 222223333
Q ss_pred HHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhHhHHhhhhe
Q psy15226 202 TTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFNYF 281 (362)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 281 (362)
+..+.+.+.++ .|...++-.|..|..+|+.-+-.. ++..+|.+....+.-....+.||++..........+. ....+
T Consensus 172 f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~-a~f~~ 248 (528)
T KOG0253|consen 172 FRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFA-ARFLV 248 (528)
T ss_pred HHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHH-HHHHh
Confidence 33344444333 555557788999999999877666 8888999999998888888999998666666444444 34447
Q ss_pred eeccCC
Q psy15226 282 YLMETK 287 (362)
Q Consensus 282 ~~~e~~ 287 (362)
+.||+.
T Consensus 249 w~~ESp 254 (528)
T KOG0253|consen 249 WVYESP 254 (528)
T ss_pred hcccCc
Confidence 788874
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.90 E-value=7e-08 Score=89.54 Aligned_cols=145 Identities=12% Similarity=-0.040 Sum_probs=85.6
Q ss_pred hhHHHHHHHHHHHHHHHHH----HHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcC-CCCcchHHHHHHHHHHHHhh
Q psy15226 137 PDQCILVFMIIMFLSNFLQ----APLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGE-LPNFQYIPYITTLLYAASYY 211 (362)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~----g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 211 (362)
..+..++..+..++..++. +++.+|.+.++.+.++.++.+++.+.+......... ...+.+..+....+.+.+-.
T Consensus 318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~ 397 (500)
T PRK09584 318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGEL 397 (500)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHH
Confidence 4566666666666665655 455555555566778888888887776552211100 01112233333444444435
Q ss_pred cccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHH----------hhchhHHHHHHHHhhHhHHhhhhe
Q psy15226 212 GIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITK----------SLGQHVIFFIYSSVHFCSVVFNYF 281 (362)
Q Consensus 212 ~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~----------~~g~~~~~~~~~~~~~i~~~~~~~ 281 (362)
...|...+++.+..|++.||+++|+......+|+.++..+...... ..+....|...++..++..++.+.
T Consensus 398 ~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~ 477 (500)
T PRK09584 398 MISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLL 477 (500)
T ss_pred HHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 5566667899999999999999998877776777666666542210 112456676666665555444433
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.5e-08 Score=81.53 Aligned_cols=139 Identities=14% Similarity=0.005 Sum_probs=98.6
Q ss_pred hHHHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCC
Q psy15226 115 GITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPN 194 (362)
Q Consensus 115 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (362)
..+.+..|.|.+.+..|++..+...+.....++..+| ++.|.+.|++|.+.++.+|.+...++...+...... ...
T Consensus 17 t~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~---~i~ 92 (250)
T PF06813_consen 17 TTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSG---RIP 92 (250)
T ss_pred cccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhC---ccC
Confidence 3478899999999999999888888888888888765 888999999999999999999988888776442211 111
Q ss_pred cchHHHHHHHHHHHHh-hcc-cccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15226 195 FQYIPYITTLLYAASY-YGI-GCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKS 258 (362)
Q Consensus 195 ~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~ 258 (362)
.......+...+..+. .++ .........+.|| ++||++.|+.-...++++.+-..+...+.+.
T Consensus 93 ~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~ 157 (250)
T PF06813_consen 93 SLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGD 157 (250)
T ss_pred ccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCC
Confidence 1122222233222222 222 2222244557787 5799999999999999988888877666554
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.9e-08 Score=91.01 Aligned_cols=166 Identities=11% Similarity=0.047 Sum_probs=102.7
Q ss_pred HHHHHhHHHHhhh-cCCCCCchhHHHHHHHHHHHHHHHHHHHHhhh----cCCc-hhhhhhhHhHHHHHHHHHHHHHHhc
Q psy15226 117 TSMITYSSTLLPK-LDNAYFGPDQCILVFMIIMFLSNFLQAPLMDI----LGRK-PLSCFSAALGCLLTFSTGLFYLYQG 190 (362)
Q Consensus 117 ~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~grr-~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (362)
.....|++.++.+ .|.+....+....+..+...+..++.|+++|| +||| +.++.+.+..+++..++.. .+.
T Consensus 26 ~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~---~p~ 102 (444)
T PRK09669 26 QTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFY---TPD 102 (444)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHh---CCC
Confidence 3445566655555 49998889999999999999999999999998 6775 4455666666666544322 110
Q ss_pred CCCCc-chHHHHHHHHHHHHh-hcccccchhhcccCC-CcchhhhhhHHHHHHHHHHHHHHHHHHHHHHH-------hhc
Q psy15226 191 ELPNF-QYIPYITTLLYAASY-YGIGCLPNILVSELF-PINVRCQASSCASVALAFGSFITTKFHILITK-------SLG 260 (362)
Q Consensus 191 ~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~~-p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~-------~~g 260 (362)
..... .....+...++..++ ....|- .++.+|+. ++++|.+..+....+..+|+.+++.+...+.. ..|
T Consensus 103 ~~~~~~~~~~~~~~~l~~~~~t~~~ip~-~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g 181 (444)
T PRK09669 103 FGATGKIIYACVTYILLSLVYTAINVPY-CAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKG 181 (444)
T ss_pred CCcchHHHHHHHHHHHHHHHHHhhcchH-HHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhh
Confidence 00011 112222222333333 333333 37888887 55779988888888888887777765544433 235
Q ss_pred hhHHHHHHHHhhHhHHhhhheeeccC
Q psy15226 261 QHVIFFIYSSVHFCSVVFNYFYLMET 286 (362)
Q Consensus 261 ~~~~~~~~~~~~~i~~~~~~~~~~e~ 286 (362)
|+..+.+.+++.++..+++++..+|.
T Consensus 182 ~~~~~~i~~ii~~v~~~~~~~~~~e~ 207 (444)
T PRK09669 182 YFYAMMVMGLLGVVLFFCCFFMTKER 207 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCeEEe
Confidence 66667777777666655555555553
|
|
| >KOG2563|consensus | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.3e-07 Score=82.76 Aligned_cols=190 Identities=11% Similarity=-0.041 Sum_probs=112.6
Q ss_pred ccchhhhccCcchhHHHHHHHHHHHHHhhhhHHHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCC
Q psy15226 85 KTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGR 164 (362)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~gr 164 (362)
..+.++.++++.+ ++.+.. +......++.....+...+...|++...+++......+++++++.+.|.+.||.+.
T Consensus 256 ~~si~~~~~n~~F----~il~~~-ygi~~g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~ 330 (480)
T KOG2563|consen 256 PKSIKSCFKNRQF----IILAIC-YGIGLGLFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKK 330 (480)
T ss_pred HHHHHHHHcCccH----HHHHHH-HhhhHHHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 3456777876432 222211 11222233555555554555567777788999999999999999999999999865
Q ss_pred ch-hhhhhhHhHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHH
Q psy15226 165 KP-LSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAF 243 (362)
Q Consensus 165 r~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~i 243 (362)
-+ ..+.......++...+.. ... .............+++.+..+..|+..-+..|..-|..-++..|+.+..+++
T Consensus 331 fk~~~~v~~~~~~v~~~~l~~-~t~---~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~ 406 (480)
T KOG2563|consen 331 FKLTTLVLYLFALVGTLMLLT-CTL---FLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQI 406 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hhc---cCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhH
Confidence 43 333334433333211111 111 1122222222233333333666778778888886666678888999999999
Q ss_pred HHHHHHHHHHHHHHhhc----hhHHHHHHHHhhHhHHhhhheee
Q psy15226 244 GSFITTKFHILITKSLG----QHVIFFIYSSVHFCSVVFNYFYL 283 (362)
Q Consensus 244 g~~~~~~~~~~~~~~~g----~~~~~~~~~~~~~i~~~~~~~~~ 283 (362)
-+++-..+.+...+..+ +...-+.....+++..++..++.
T Consensus 407 f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r 450 (480)
T KOG2563|consen 407 FGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFR 450 (480)
T ss_pred HHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhh
Confidence 88888888888877766 44334444444555545543433
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.5e-07 Score=79.31 Aligned_cols=180 Identities=13% Similarity=0.018 Sum_probs=111.2
Q ss_pred hhHHHHHHHHHHHHHhhhhHHHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHH
Q psy15226 97 NRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGC 176 (362)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~ 176 (362)
.++..+....+..... +....|.-...++.|++..+.............+...+.|.++||+|||+..+..+++.+
T Consensus 35 Fqr~yl~vY~La~~aD----WLQGpY~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~ 110 (354)
T PF05631_consen 35 FQRKYLLVYLLAMAAD----WLQGPYLYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYS 110 (354)
T ss_pred HHHHHHHHHHHHHHHH----HhhcchhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHH
Confidence 3444444444443322 334445555567789998888888888999999999999999999999999888888888
Q ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHh-hcccccchhhcccC----CCcchhhhhhHHHH-HHHHHHHHHHHH
Q psy15226 177 LLTFSTGLFYLYQGELPNFQYIPYITTLLYAASY-YGIGCLPNILVSEL----FPINVRCQASSCAS-VALAFGSFITTK 250 (362)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~----~p~~~r~~~~~~~~-~~~~ig~~~~~~ 250 (362)
++++..- .......++..++.+... .-+.+-=.=++.|. +|.+..+...+... ..+.+.++.+..
T Consensus 111 ~scl~k~---------~~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv 181 (354)
T PF05631_consen 111 LSCLTKH---------SSNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGV 181 (354)
T ss_pred HHHHHHh---------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhH
Confidence 8776532 233344444444444443 22222211134443 44444444444444 233444555555
Q ss_pred HHHHHHHhhc--hhHHHHHHHHhhHhHHhhhheeeccCCCC
Q psy15226 251 FHILITKSLG--QHVIFFIYSSVHFCSVVFNYFYLMETKQK 289 (362)
Q Consensus 251 ~~~~~~~~~g--~~~~~~~~~~~~~i~~~~~~~~~~e~~~~ 289 (362)
+...+.+..+ ...+|.....+.+++.++.....+|+.+.
T Consensus 182 ~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~ 222 (354)
T PF05631_consen 182 VANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENYGD 222 (354)
T ss_pred HHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccccCCC
Confidence 5555556554 46788888888888777776677786554
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.5e-07 Score=86.60 Aligned_cols=160 Identities=16% Similarity=0.047 Sum_probs=99.6
Q ss_pred HHHHhHHHHhh-hcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcC-----CchhhhhhhHhHH-HHHHHHHHHHHHhc
Q psy15226 118 SMITYSSTLLP-KLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILG-----RKPLSCFSAALGC-LLTFSTGLFYLYQG 190 (362)
Q Consensus 118 ~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g-----rr~~~~~~~~~~~-~~~~~~~~~~~~~~ 190 (362)
......+.+++ +.|.+..+.+...+...+...+-.+ +|.++||++ ||+.++++.++.. ++...++.
T Consensus 43 l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~------ 115 (468)
T TIGR00788 43 LMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPG------ 115 (468)
T ss_pred HhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhccc------
Confidence 33334444444 5699988887888888888888555 999999997 6666666665542 22222111
Q ss_pred CCCCcchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhH---HHHHHHHHHHHHHHHHHHHHHHhhchhHHHHH
Q psy15226 191 ELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASS---CASVALAFGSFITTKFHILITKSLGQHVIFFI 267 (362)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~---~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~~ 267 (362)
..+........+.+...+........-++..|..+ +.++...+ .......+|..+++.+.|.+.+..+|+..|++
T Consensus 116 -~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~ 193 (468)
T TIGR00788 116 -KVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLI 193 (468)
T ss_pred -ccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHH
Confidence 11111122212222222223333444588899888 44444333 33344458999999999999999999999988
Q ss_pred HHHhhHhHHhhhheeeccCC
Q psy15226 268 YSSVHFCSVVFNYFYLMETK 287 (362)
Q Consensus 268 ~~~~~~i~~~~~~~~~~e~~ 287 (362)
.+.+.++. .+..++.+|.+
T Consensus 194 ~a~l~ll~-~~~~~~~~E~~ 212 (468)
T TIGR00788 194 TAALLLLQ-LFVSNLSKERR 212 (468)
T ss_pred HHHHHHHH-HHHHHhccccc
Confidence 88887777 33346677754
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.2e-07 Score=84.79 Aligned_cols=165 Identities=14% Similarity=0.121 Sum_probs=100.7
Q ss_pred HHHHHhHHHHhhhc-CCCCCchhHHHHHHHHHHHHHHHHHHHHhh----hcCC-chhhhhhhHhHHHHHHHHHHHHHHhc
Q psy15226 117 TSMITYSSTLLPKL-DNAYFGPDQCILVFMIIMFLSNFLQAPLMD----ILGR-KPLSCFSAALGCLLTFSTGLFYLYQG 190 (362)
Q Consensus 117 ~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~gr-r~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (362)
.....|++.++.+. |.+....+.+..+..+...+..++.|.++| |+|| |+.++.+....+++..++.. .+
T Consensus 23 ~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~---~p- 98 (473)
T PRK10429 23 GIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFS---AH- 98 (473)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHc---CC-
Confidence 44556667777665 999888889999999999999999999999 5588 55556666666666544321 11
Q ss_pred CCCCcc-h-HHHHHHHHHHHHh-hcccccchhhcccCC-CcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHh-------h
Q psy15226 191 ELPNFQ-Y-IPYITTLLYAASY-YGIGCLPNILVSELF-PINVRCQASSCASVALAFGSFITTKFHILITKS-------L 259 (362)
Q Consensus 191 ~~~~~~-~-~~~~~~~~~~~~~-~~~~~~~~~~~~e~~-p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~-------~ 259 (362)
+..... . ...+...++..++ ....|- .++..|+. ++++|....+.-..+..+|+.+.+.+...+.+. .
T Consensus 99 ~~~~~~~~~~~~~~~~l~~~~~t~~~ip~-~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~ 177 (473)
T PRK10429 99 LFEGTAQYVFVCVTYILWGMTYTIMDIPF-WSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGF 177 (473)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHcchH-HhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhh
Confidence 001111 1 1122222333333 333333 37889988 588899988887777777766666554433322 2
Q ss_pred chhHHHHHHHHhhHhHHhhhheeeccC
Q psy15226 260 GQHVIFFIYSSVHFCSVVFNYFYLMET 286 (362)
Q Consensus 260 g~~~~~~~~~~~~~i~~~~~~~~~~e~ 286 (362)
+|+....+.+++.+++..+.++..||.
T Consensus 178 g~~~~~~i~~~~~~~~~~~~~~~~~e~ 204 (473)
T PRK10429 178 GFQMFTLVLIAFFIVSTIITLRNVHEV 204 (473)
T ss_pred hHHHHHHHHHHHHHHHHHHHHcCceec
Confidence 345455555555555555554545553
|
|
| >KOG2816|consensus | Back alignment and domain information |
|---|
Probab=98.74 E-value=4.6e-07 Score=82.15 Aligned_cols=138 Identities=18% Similarity=0.187 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhcccccchhhccc
Q psy15226 144 FMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSE 223 (362)
Q Consensus 144 ~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 223 (362)
.++..++.++..|.++||+|||..+........+..+...+ ..+..++ ..-..+++........++++|
T Consensus 71 ~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~----------~~~~~~~-~~~l~g~~~~~~s~~~a~vad 139 (463)
T KOG2816|consen 71 AGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLF----------QGYWFFL-LLGLSGGFSAIFSVGFAYVAD 139 (463)
T ss_pred hHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHH----------HHHHHhh-hcccccchhhhhhhhhhheee
Confidence 36788899999999999999999999888888777776655 1122222 111111223344445589999
Q ss_pred CCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhHhHHhhhheeeccCCCCCHH
Q psy15226 224 LFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFNYFYLMETKQKTLA 292 (362)
Q Consensus 224 ~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~ 292 (362)
....+.|....|+.+.....+..++|.+.+...+..|...+|.+..+..++..+...+++||+..++++
T Consensus 140 is~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~ 208 (463)
T KOG2816|consen 140 ISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKER 208 (463)
T ss_pred ccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcccc
Confidence 999999999999999999999999999999999999998899999999999988888899998765543
|
|
| >KOG3764|consensus | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.7e-08 Score=86.71 Aligned_cols=233 Identities=11% Similarity=-0.019 Sum_probs=137.3
Q ss_pred chhhHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhccCCChHHHHhcCCHHHHHHHHHhHcCCcccHHHHHHHHHHHHhhc
Q psy15226 2 VGTLAILLIGNHVSYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQED 81 (362)
Q Consensus 2 ~G~~~~~~l~~~~~Wr~~f~~~~~~~~~~~~~~~~lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (362)
+|+.+|+++-+..|.+..|++.+++.++-..+.+++-|.-+ .+ + ++
T Consensus 211 vgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~-----~~-------------------~----------~~ 256 (464)
T KOG3764|consen 211 VGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTE-----MD-------------------P----------DS 256 (464)
T ss_pred ecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccc-----cC-------------------c----------cc
Confidence 46666666777779999999999999998888877433211 00 0 01
Q ss_pred cccccchhhhccCcchhHHHHHHHHHHHHHhhhhHHHHHHhHHH-HhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhh
Q psy15226 82 LKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSST-LLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMD 160 (362)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d 160 (362)
.++..++++++++|..+. .+..+... . .+....-.-++. ..++...+..+.+.......+...+++.+.|.++|
T Consensus 257 ~~~~~~~~~Ll~dP~I~~---~agai~~~-n-~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~ 331 (464)
T KOG3764|consen 257 TEQGTPMWSLLMDPYILL---IAGAITFS-N-SSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLAD 331 (464)
T ss_pred cccCccHHHHHhCchHhh---hhcchhhc-c-chHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHH
Confidence 234456788888653221 11112111 1 111111111222 23344544346677778888999999999999999
Q ss_pred hcCCchhhh--hhhHhHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHh-hcccccchhhcccCCCcc---hhhhhh
Q psy15226 161 ILGRKPLSC--FSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASY-YGIGCLPNILVSELFPIN---VRCQAS 234 (362)
Q Consensus 161 r~grr~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~~p~~---~r~~~~ 234 (362)
|++.-+.+. .+.+...++.....+.. .....+.....+...+... ....|.. .+..|.-..+ .-|...
T Consensus 332 k~~~~~wl~~~~gl~~~G~~~~~iP~~~-----~~~~L~vp~~~l~~~i~~~dasl~P~l-~~lvd~rh~s~~~vYGsVy 405 (464)
T KOG3764|consen 332 KYPHLRWLLSLGGLATVGVSSGPIPFAT-----SIAQLWVPNFGLGFGIGLADASLIPTL-GYLVDPRHVSGFNVYGSVY 405 (464)
T ss_pred hcCchhHHHHHHHHHHHHHHhchhHhhh-----hHHHHhhhhHHHHHHHHHHHHHHhhhh-HHhcchhhccccceeeeHH
Confidence 999433322 23333333322222200 0001111112222222222 4444544 4555554444 668888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhHhHHhhh
Q psy15226 235 SCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFN 279 (362)
Q Consensus 235 ~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~ 279 (362)
++......+|.+++|.++|.+.+..|+.|...+.++..++...++
T Consensus 406 aIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyapvl 450 (464)
T KOG3764|consen 406 AIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAPVL 450 (464)
T ss_pred HHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998888888877765554
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=98.71 E-value=4e-07 Score=82.69 Aligned_cols=156 Identities=13% Similarity=0.031 Sum_probs=88.7
Q ss_pred HHHHHHhHHHHhhh-cCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCC-chhhhhhhHhHHHHHHHHHHHHHHhcCCC
Q psy15226 116 ITSMITYSSTLLPK-LDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGR-KPLSCFSAALGCLLTFSTGLFYLYQGELP 193 (362)
Q Consensus 116 ~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~gr-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (362)
+.....+++.++.+ .|.+..+.++..+...++..+++++.|.++||+|| |+++..+.+...++.....+ .
T Consensus 18 ~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~--------~ 89 (418)
T TIGR00889 18 WGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQ--------V 89 (418)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH--------h
Confidence 34455555666644 69999999999999999999999999999999965 66777666666555555443 1
Q ss_pred CcchHHHHHHHHHHHHhhcccccc----hhhcc----cCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHH
Q psy15226 194 NFQYIPYITTLLYAASYYGIGCLP----NILVS----ELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIF 265 (362)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~----e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~ 265 (362)
++.+.......+.+.......+.. ..+.. |......|.+..| .+|.++++.+.+.+....+| .+|
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~~~~-~~f 162 (418)
T TIGR00889 90 TTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIELSN-IQL 162 (418)
T ss_pred cCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcccchh-HHH
Confidence 122222222222222221111111 12222 2222222333333 36777788888766322223 356
Q ss_pred HHHHHhhHhHHhhhheeeccCC
Q psy15226 266 FIYSSVHFCSVVFNYFYLMETK 287 (362)
Q Consensus 266 ~~~~~~~~i~~~~~~~~~~e~~ 287 (362)
++.++..++..++ .+..||++
T Consensus 163 ~~~~~~~~~~~~~-~~~~~e~~ 183 (418)
T TIGR00889 163 YITAGSSALLGVF-ALTLPDIP 183 (418)
T ss_pred HHHHHHHHHHHHH-HhcCCCCC
Confidence 6666665555444 35677753
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.1e-06 Score=80.75 Aligned_cols=165 Identities=16% Similarity=0.054 Sum_probs=104.5
Q ss_pred HHHHHhHHHHhhhc-CCCCCchhHHHHHHHHHHHHHHHHHHHHhhh----cCCchh-hhhhhHhHHHHHHHHHHHHHHhc
Q psy15226 117 TSMITYSSTLLPKL-DNAYFGPDQCILVFMIIMFLSNFLQAPLMDI----LGRKPL-SCFSAALGCLLTFSTGLFYLYQG 190 (362)
Q Consensus 117 ~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~grr~~-~~~~~~~~~~~~~~~~~~~~~~~ 190 (362)
.....|+..++.+. |+++...+.+..+.-+...+.-++.|.++|| +|||+. ++++.+..+++..++.. .+
T Consensus 26 ~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~---~p- 101 (460)
T PRK11462 26 DNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYS---TP- 101 (460)
T ss_pred HHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHh---CC-
Confidence 44455666666555 9998888888888999999999999999996 577654 44566666666544322 11
Q ss_pred CCCCcc--hHHHHHHHHHHHHh-hcccccchhhcccCCC-cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh-------
Q psy15226 191 ELPNFQ--YIPYITTLLYAASY-YGIGCLPNILVSELFP-INVRCQASSCASVALAFGSFITTKFHILITKSL------- 259 (362)
Q Consensus 191 ~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~e~~p-~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~------- 259 (362)
...... ....+...++..++ ....|- .++.+|+.+ +++|++..++-..++.+|..+++.+...+.+..
T Consensus 102 ~~s~~~~~~y~~~~~~~~~~~~t~~~ipy-~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~ 180 (460)
T PRK11462 102 DLSMNGKMIYAAITYTLLTLLYTVVNIPY-CALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPL 180 (460)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHhccH-HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhh
Confidence 111111 11222233334444 333333 378888876 788999999999888888888877765554433
Q ss_pred chhHHHHHHHHhhHhHHhhhheeeccC
Q psy15226 260 GQHVIFFIYSSVHFCSVVFNYFYLMET 286 (362)
Q Consensus 260 g~~~~~~~~~~~~~i~~~~~~~~~~e~ 286 (362)
||.....+++++.+++..+++...+|.
T Consensus 181 g~~~~~~i~~ii~~i~~~i~~~~~kE~ 207 (460)
T PRK11462 181 GFQGGIAVLSVVAFMMLAFCFFTTKER 207 (460)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcceec
Confidence 455555566666555555554445553
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.5e-07 Score=84.46 Aligned_cols=165 Identities=18% Similarity=0.162 Sum_probs=108.5
Q ss_pred HHHHhHHHHhhhc-CCCCCchhHHHHHHHHHHHHHHHHHHHHhh----hcCCchhhh-hhhHhHHHHHHHHHHHHHHhcC
Q psy15226 118 SMITYSSTLLPKL-DNAYFGPDQCILVFMIIMFLSNFLQAPLMD----ILGRKPLSC-FSAALGCLLTFSTGLFYLYQGE 191 (362)
Q Consensus 118 ~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~grr~~~~-~~~~~~~~~~~~~~~~~~~~~~ 191 (362)
....|++.++.+. |.++...+....+..+...+..++.|.++| |+|||+..+ .+....+++..++... .+..
T Consensus 19 ~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~--~p~~ 96 (428)
T PF13347_consen 19 LLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSP--PPAG 96 (428)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhcc--ccch
Confidence 3444555555554 999888888888888999999999999999 788776544 5667777766665330 0000
Q ss_pred CCC--cchHHHHHHHHHHHHh-hcccccchhhcccCCC-cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh-------c
Q psy15226 192 LPN--FQYIPYITTLLYAASY-YGIGCLPNILVSELFP-INVRCQASSCASVALAFGSFITTKFHILITKSL-------G 260 (362)
Q Consensus 192 ~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~~p-~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~-------g 260 (362)
... ......+...++..++ ....|. .++.+|+.+ +++|.+..+.-..+..+|..+...+.+.+.+.. +
T Consensus 97 ~~~~~~~~~~~~~~~l~~~~~t~~~i~~-~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~ 175 (428)
T PF13347_consen 97 LSFTAKLVWLFVFYILFDIAYTFVQIPY-NALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNG 175 (428)
T ss_pred hhhhhHHHHHHHHHHHHHHhhhhccCch-hhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchH
Confidence 000 1111233333444444 333333 388999987 568999999988888888876666666655432 4
Q ss_pred hhHHHHHHHHhhHhHHhhhheeecc
Q psy15226 261 QHVIFFIYSSVHFCSVVFNYFYLME 285 (362)
Q Consensus 261 ~~~~~~~~~~~~~i~~~~~~~~~~e 285 (362)
|+....+.+++.+++.++..+..+|
T Consensus 176 ~~~~~~v~~iv~~v~~~i~~~~~ke 200 (428)
T PF13347_consen 176 YRWMALVLAIVGLVFFLITFFFVKE 200 (428)
T ss_pred HHHHHHHHHHHHHHHhhhhhheeee
Confidence 7777777777777777777677776
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.9e-06 Score=78.31 Aligned_cols=162 Identities=5% Similarity=-0.008 Sum_probs=99.0
Q ss_pred HHHHHhHHHHhhhc-CCCCCc--hhHHHHHHHHHHHHHHHHHHHHhhhcCCch--------hhhhhhHhHHHHHHHHHHH
Q psy15226 117 TSMITYSSTLLPKL-DNAYFG--PDQCILVFMIIMFLSNFLQAPLMDILGRKP--------LSCFSAALGCLLTFSTGLF 185 (362)
Q Consensus 117 ~~~~~~~~~~~~~~-g~~~~~--~~~~~~~~~~~~~~~~~~~g~l~dr~grr~--------~~~~~~~~~~~~~~~~~~~ 185 (362)
......+.++.+.. |.+.+. .....++.++++.+|.+..|.++...-+|+ +.+....++.++.+++.+
T Consensus 370 l~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~~~~~~lll~~- 448 (591)
T PTZ00207 370 FVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSVCIITMLTLFL- 448 (591)
T ss_pred heeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHH-
Confidence 45556677777777 763233 223678889999999999998883332222 222222224444444333
Q ss_pred HHHhcCCCCcchHHHHHHHHHHHHh-hcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHH-HHHHHHHHHhh----
Q psy15226 186 YLYQGELPNFQYIPYITTLLYAASY-YGIGCLPNILVSELFPINVRCQASSCASVALAFGSFIT-TKFHILITKSL---- 259 (362)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~-~~~~~~~~~~~---- 259 (362)
. .+.....+...+.+.++ ..+.... ..++|+|. ++-|+-..+.....-+|..+- ..+.|.+.|+.
T Consensus 449 -----~--~p~~~L~~~~~lvg~~~G~~~~~~~-~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~ 519 (591)
T PTZ00207 449 -----T--LPKAALPLPYFIAAFANGFMAATIA-LVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKL 519 (591)
T ss_pred -----H--CCccHhHHHHHHHHHHhhHhHHHHH-HHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 1 12133444455555555 4444444 88999999 777777777777777777665 45667666542
Q ss_pred ---------chhHHHHHHHHhhHhHHhhhheeeccCCC
Q psy15226 260 ---------GQHVIFFIYSSVHFCSVVFNYFYLMETKQ 288 (362)
Q Consensus 260 ---------g~~~~~~~~~~~~~i~~~~~~~~~~e~~~ 288 (362)
-.+.+|++.+++++.+.+......-++++
T Consensus 520 ~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R~r~ 557 (591)
T PTZ00207 520 GQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQYRR 557 (591)
T ss_pred CCCeeCCceeeHhHHHHHHHHHHHHHHHHhheeeehHH
Confidence 14578999999998888776665555554
|
|
| >KOG2325|consensus | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.8e-07 Score=81.22 Aligned_cols=160 Identities=11% Similarity=0.080 Sum_probs=110.5
Q ss_pred Hhhh--cCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCC-chhhhhhhHhHHHHHHHHHHHHHHhcCCCCcchHHHHH
Q psy15226 126 LLPK--LDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGR-KPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYIT 202 (362)
Q Consensus 126 ~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~gr-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (362)
|+++ .+.+.+-.+++.....++..++++..|+.+.|.++ |+.++.+.++++++.++....-+.+ ....+.++..
T Consensus 60 Yl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~---~~~~y~mL~~ 136 (488)
T KOG2325|consen 60 YLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVP---NGVKYLMLVA 136 (488)
T ss_pred hhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcc---cchHHHHHHH
Confidence 4444 45565667889999999999999999999999986 7777888888888888874333222 2234444444
Q ss_pred HHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHh--hc-----------hhHHHHHHH
Q psy15226 203 TLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKS--LG-----------QHVIFFIYS 269 (362)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~--~g-----------~~~~~~~~~ 269 (362)
..+.+.+ .+.....-.|+++....+.|.++++..+....+|.++||.+...+..- .| +..+-|+.+
T Consensus 137 R~l~Gvg-~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~ 215 (488)
T KOG2325|consen 137 RILTGVG-VGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMA 215 (488)
T ss_pred HHHcCcC-cccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHH
Confidence 4444433 344455568999988888899998888877777777777765443321 11 235677778
Q ss_pred HhhHhHHhhhheeeccCCCC
Q psy15226 270 SVHFCSVVFNYFYLMETKQK 289 (362)
Q Consensus 270 ~~~~i~~~~~~~~~~e~~~~ 289 (362)
++.++..++..++++|..+.
T Consensus 216 i~~i~~~v~i~~~f~E~~~~ 235 (488)
T KOG2325|consen 216 ILWIIYIVIILFFFKEVYRG 235 (488)
T ss_pred HHHHHHHHHHHhheeecccC
Confidence 88888877777778775433
|
|
| >KOG3626|consensus | Back alignment and domain information |
|---|
Probab=98.65 E-value=4.8e-07 Score=84.73 Aligned_cols=168 Identities=12% Similarity=0.069 Sum_probs=91.5
Q ss_pred CchhhHHHHhhhhh-----------------------hhHHHHHHHHHHHHHHHHHhhccCCChHHHHhcCCHHHHHHHH
Q psy15226 1 MVGTLAILLIGNHV-----------------------SYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSL 57 (362)
Q Consensus 1 ~~G~~~~~~l~~~~-----------------------~Wr~~f~~~~~~~~~~~~~~~~lpesp~~l~~~~~~~~a~~~l 57 (362)
++||.+|++++... .|..-|++.+.+.++..+..+++|.... +.++. ...+..
T Consensus 283 ~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp---~~~~~-~~~~~~ 358 (735)
T KOG3626|consen 283 ILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKELP---KSQKR-KRARDL 358 (735)
T ss_pred HhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccCc---ccccc-chhhhh
Confidence 47888888876432 3888899999999988887777765542 11111 000111
Q ss_pred HhHcCCcccHHHHHHHHHHHHhhccccccchhhhccCcchhHHHHHHHHHHHHHhhhhHHHHHHhHHHHhhhc-CCCCCc
Q psy15226 58 KWYRGNKKDVMEEMNSIMDKTQEDLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKL-DNAYFG 136 (362)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~ 136 (362)
+....+++..+++. ...+ +-++-....+++++||.+ +...+........+.++.+|+|.|++.+ |.+...
T Consensus 359 ~~~k~~~~~~~~~~-~~~~---~ikdfp~s~~~ll~N~if-----~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~ 429 (735)
T KOG3626|consen 359 HVLKTESGGAKSDK-TFGK---KIKDFPKSIKRLLSNPIF-----MLVVLASVIESLAITGYITFLPKYLETQFGISASL 429 (735)
T ss_pred cccccccccccCCc-chhh---hHHHHHHHHHHHhcCchH-----HHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHH
Confidence 11111100000000 0000 000112345666766432 2233333334445688899999999876 888777
Q ss_pred hhHHHHHHH-HHHHHHHHHHHHHhhhcC--CchhhhhhhHhHHHHHHH
Q psy15226 137 PDQCILVFM-IIMFLSNFLQAPLMDILG--RKPLSCFSAALGCLLTFS 181 (362)
Q Consensus 137 ~~~~~~~~~-~~~~~~~~~~g~l~dr~g--rr~~~~~~~~~~~~~~~~ 181 (362)
+..+....+ -+..+|.+++|++..|+. -|....+.++...++.+.
T Consensus 430 An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~l~~ 477 (735)
T KOG3626|consen 430 ANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLSLLF 477 (735)
T ss_pred HHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHHHHH
Confidence 776664444 456788899999999874 344444444444444433
|
|
| >KOG2615|consensus | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.1e-06 Score=75.34 Aligned_cols=121 Identities=16% Similarity=0.117 Sum_probs=80.8
Q ss_pred hhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcC--CchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q psy15226 128 PKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILG--RKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLL 205 (362)
Q Consensus 128 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g--rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (362)
..+|+++.+.+.+....++.+.+....-.+..||.. -+-.+..+...+.-..+.... .. ..........+
T Consensus 290 ~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~-------~~-~~~~l~~~s~l 361 (451)
T KOG2615|consen 290 GRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSL-------AR-TPVVLYLGSTL 361 (451)
T ss_pred CccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhc-------cc-cchhhhHHHHH
Confidence 445888888898888888888888888888787765 333333333333333332222 12 22233333334
Q ss_pred HHHHh-hcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy15226 206 YAASY-YGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITK 257 (362)
Q Consensus 206 ~~~~~-~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~ 257 (362)
..+.. ....++. .++....|.++||+..|+....+.++-++||.+.|.+..
T Consensus 362 ~sf~~A~~vt~Lt-~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~ 413 (451)
T KOG2615|consen 362 KSFSTASVVTCLT-SLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFS 413 (451)
T ss_pred HHHHHHHhhHHHH-HHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEE
Confidence 43333 3444444 788899999999999999999999999999999987654
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.2e-07 Score=82.21 Aligned_cols=160 Identities=12% Similarity=0.041 Sum_probs=88.6
Q ss_pred HHHHHHhHHHHhhh-cCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCC
Q psy15226 116 ITSMITYSSTLLPK-LDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPN 194 (362)
Q Consensus 116 ~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (362)
+.....+.+..+++ .|++.++.+.+.+...+..++.+++.|.++||+|.|+-++.......+....+..+.+.+. ...
T Consensus 23 ~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pl-l~~ 101 (412)
T PF01306_consen 23 WGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPL-LQS 101 (412)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHH-HHT
T ss_pred HHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 45666777888876 6999999999999999999999999999999999777655443332222111111111000 001
Q ss_pred cchHHHHHHHHHHHHh-hcccccchhhcccCCC---cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHH
Q psy15226 195 FQYIPYITTLLYAASY-YGIGCLPNILVSELFP---INVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSS 270 (362)
Q Consensus 195 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~~p---~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~~~~~ 270 (362)
+.+. ...+.+... ..+.+.. =+.|.+- .+..+.=.|=.-..+.+|.++++.+.|.+.+ .+.+..|++..+
T Consensus 102 n~~l---g~iig~i~l~~~f~~~~--~~~Ea~~er~sr~~~feYG~~R~wGSig~ai~s~~~G~L~~-i~p~~~fwi~s~ 175 (412)
T PF01306_consen 102 NFWL---GAIIGGIYLGLVFNAGV--PLSEAYAERVSRRNGFEYGRARMWGSIGFAIASLLAGILFN-INPNIIFWIASA 175 (412)
T ss_dssp T-HH---HHHHTTTTTTTTTTTHH--HHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHH---HHHHHHHHHHHHHcccc--hHHHHHHHHHHHHhcCCcchHHHHhhHHHHHHHHHhheeee-eCccHHHHHHHH
Confidence 1111 111111111 2222221 1224321 1223444555667889999999999998886 455567777665
Q ss_pred hhHhHHhhhhee
Q psy15226 271 VHFCSVVFNYFY 282 (362)
Q Consensus 271 ~~~i~~~~~~~~ 282 (362)
..++..++.++.
T Consensus 176 ~~~il~lll~~~ 187 (412)
T PF01306_consen 176 AAIILLLLLLLL 187 (412)
T ss_dssp HHHHHHHHHHSS
T ss_pred HHHHHHHHHHHc
Confidence 555554444333
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=98.55 E-value=4.9e-07 Score=86.12 Aligned_cols=90 Identities=16% Similarity=0.050 Sum_probs=60.6
Q ss_pred chhhhccCcchhHHHHHHHHHHHHHhhhhHHHHHHhHHHHhhhc-CCCCCchhHHHHHHHH-HHHHHHHHHHHHhhhcCC
Q psy15226 87 GYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKL-DNAYFGPDQCILVFMI-IMFLSNFLQAPLMDILGR 164 (362)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~gr 164 (362)
.+++++++|..+...+.... ....++.+..|+|.++++. |++..+++.......+ +.+++.+++|+++||+++
T Consensus 322 ~~~~Ll~n~~f~~~~l~~~~-----~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~ 396 (633)
T TIGR00805 322 IIKRLLCNPIYMLVILAQVI-----DSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKL 396 (633)
T ss_pred HHHHHHcCcHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecc
Confidence 45677887544333322222 2224567788999999864 9988888877776665 568999999999999984
Q ss_pred --chhhhhhhHhHHHHHHH
Q psy15226 165 --KPLSCFSAALGCLLTFS 181 (362)
Q Consensus 165 --r~~~~~~~~~~~~~~~~ 181 (362)
|+.+.++.+...++.+.
T Consensus 397 ~~~~~~~~~~~~~~~~~~~ 415 (633)
T TIGR00805 397 NVKKAAYFAICLSTLSYLL 415 (633)
T ss_pred cHHHHHHHHHHHHHHHHHH
Confidence 45555566555555444
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >KOG3762|consensus | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.8e-07 Score=81.47 Aligned_cols=154 Identities=11% Similarity=0.055 Sum_probs=119.9
Q ss_pred HHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcc
Q psy15226 117 TSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQ 196 (362)
Q Consensus 117 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (362)
....+++=..+++.+..+.-.+........+.++.-++.+++.+|+|+-+++..++....+-.+.+.. -.++
T Consensus 388 ~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~--------L~n~ 459 (618)
T KOG3762|consen 388 GLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSY--------LQNP 459 (618)
T ss_pred HHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHH--------hcCc
Confidence 33444555567777655455666777777888999999999999999999999998888877776554 2456
Q ss_pred hHHHHHHHHHHHHh-hcccccchhhcccCCCcchhhhhhHHHHH-HHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhHh
Q psy15226 197 YIPYITTLLYAASY-YGIGCLPNILVSELFPINVRCQASSCASV-ALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFC 274 (362)
Q Consensus 197 ~~~~~~~~~~~~~~-~~~~~~~~~~~~e~~p~~~r~~~~~~~~~-~~~ig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i 274 (362)
|..+..=++-+... ..+.++. +|++...|++.|+++.++... ..++|-.+|++++|.+.+.+|-+..|.++++.+++
T Consensus 460 W~vLPieilqgit~aliWaa~~-sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~ 538 (618)
T KOG3762|consen 460 WMVLPIEILQGITHALIWAAII-SYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLV 538 (618)
T ss_pred hheeeHHHHHHHHHHHHHHHHH-HHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHH
Confidence 66565556666666 6677776 899999999999999999864 56788899999999999999999999988888777
Q ss_pred HHhhh
Q psy15226 275 SVVFN 279 (362)
Q Consensus 275 ~~~~~ 279 (362)
.+++.
T Consensus 539 ~l~~~ 543 (618)
T KOG3762|consen 539 TLALF 543 (618)
T ss_pred HHHHH
Confidence 65543
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.53 E-value=4.8e-06 Score=71.21 Aligned_cols=153 Identities=14% Similarity=0.094 Sum_probs=121.0
Q ss_pred HHHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCc
Q psy15226 116 ITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNF 195 (362)
Q Consensus 116 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (362)
.......++.+.++.|.+...++..++++.++..+.+++..++..|+|.++.+..+.++.+++..+=.. ..
T Consensus 28 itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~---------~~ 98 (395)
T COG2807 28 ITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSL---------GG 98 (395)
T ss_pred hhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhc---------cc
Confidence 355666777888888999999999999999999999999999999999999999999888888876543 23
Q ss_pred chHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh-chhHHHHHHHHhhHh
Q psy15226 196 QYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSL-GQHVIFFIYSSVHFC 274 (362)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~i 274 (362)
....+....+.+.+....+.+....+-+-||++ -+..+|++....++++++++.+...+.++. ||+......+..+++
T Consensus 99 ~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~all 177 (395)
T COG2807 99 LPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-VGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALL 177 (395)
T ss_pred HHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-hhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHH
Confidence 333344444444444333344448889999864 688999999999999999999998888887 799998888888887
Q ss_pred HHhh
Q psy15226 275 SVVF 278 (362)
Q Consensus 275 ~~~~ 278 (362)
+.++
T Consensus 178 Al~~ 181 (395)
T COG2807 178 ALLI 181 (395)
T ss_pred HHHH
Confidence 7544
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.39 E-value=7.4e-06 Score=73.55 Aligned_cols=125 Identities=11% Similarity=0.084 Sum_probs=77.1
Q ss_pred hHHHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcC-CchhhhhhhHhHHHHHHHHHHHHHHhcCCC
Q psy15226 115 GITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILG-RKPLSCFSAALGCLLTFSTGLFYLYQGELP 193 (362)
Q Consensus 115 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g-rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (362)
.+.....|.+.++++.|++..+.+...+...+..+++.+++|.++||.+ +|+.+.+..++.++....... .
T Consensus 17 ~~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~--------~ 88 (400)
T PF03825_consen 17 AYGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAF--------S 88 (400)
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHH--------h
Confidence 3466778889999999999999999999999999999999999999986 456665555555554443322 1
Q ss_pred CcchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHH
Q psy15226 194 NFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITT 249 (362)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~ 249 (362)
+..+..+....++...+....|+.-++..+... .++.-.|-.-..+.+|-+++.
T Consensus 89 ~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~ 142 (400)
T PF03825_consen 89 SSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAA 142 (400)
T ss_pred ccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHH
Confidence 223333333333333333334444455544443 223334444444444444443
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=9.9e-06 Score=74.48 Aligned_cols=63 Identities=8% Similarity=0.108 Sum_probs=46.3
Q ss_pred HHHHhHHHHhhhc-CCCCCchhHHHHHHHHHHHHHHHHHHHHhhhc----CCchhh-hhhhHhHHHHHH
Q psy15226 118 SMITYSSTLLPKL-DNAYFGPDQCILVFMIIMFLSNFLQAPLMDIL----GRKPLS-CFSAALGCLLTF 180 (362)
Q Consensus 118 ~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~----grr~~~-~~~~~~~~~~~~ 180 (362)
....|++.++++. |++..+.+....+..+...+..++.|+++||. |||+.. ..+.+...+...
T Consensus 26 ~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~ 94 (448)
T PRK09848 26 MGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSV 94 (448)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHH
Confidence 3444555566665 99988999999999999999999999999996 666644 445554444433
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.4e-05 Score=76.00 Aligned_cols=153 Identities=14% Similarity=0.086 Sum_probs=103.2
Q ss_pred hhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhh-cCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q psy15226 128 PKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDI-LGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLY 206 (362)
Q Consensus 128 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (362)
+..|++...+......+....-+..+++|+++|+ +||++.+.++.++..++..++++...............+..+.+.
T Consensus 16 ~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLi 95 (654)
T TIGR00926 16 NFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALI 95 (654)
T ss_pred HHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHH
Confidence 3457876667777777777788888999999996 599999999999888888776651100000000011122223333
Q ss_pred HHHhhcccccchhhcccCCCcc---hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh-------chhHHHHHHHHhhHhHH
Q psy15226 207 AASYYGIGCLPNILVSELFPIN---VRCQASSCASVALAFGSFITTKFHILITKSL-------GQHVIFFIYSSVHFCSV 276 (362)
Q Consensus 207 ~~~~~~~~~~~~~~~~e~~p~~---~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~-------g~~~~~~~~~~~~~i~~ 276 (362)
.++..+.-+...+...|.++++ .|.....+.+...++|+.+++.+.+++.+.. +|...|.+.+++++++.
T Consensus 96 a~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~ 175 (654)
T TIGR00926 96 ALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILAL 175 (654)
T ss_pred HhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHH
Confidence 3333444444448888888754 3667788888899999999999999887543 58888888888887776
Q ss_pred hhhh
Q psy15226 277 VFNY 280 (362)
Q Consensus 277 ~~~~ 280 (362)
++..
T Consensus 176 lvf~ 179 (654)
T TIGR00926 176 IVFM 179 (654)
T ss_pred HHHH
Confidence 6543
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00012 Score=67.23 Aligned_cols=149 Identities=7% Similarity=-0.094 Sum_probs=87.6
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhhhcCC--ch-----hhhhhhHhHHHHHHHHHHHHHHhcC-CCCcchHHHHHHHHH
Q psy15226 135 FGPDQCILVFMIIMFLSNFLQAPLMDILGR--KP-----LSCFSAALGCLLTFSTGLFYLYQGE-LPNFQYIPYITTLLY 206 (362)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~gr--r~-----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 206 (362)
..+.+..++..+..++.+++.+++=.|.+| |. -+.+|+++.+++.+.+.+-...... ...+.+..+....+.
T Consensus 308 ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~ 387 (493)
T PRK15462 308 VPTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVM 387 (493)
T ss_pred eCHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHH
Confidence 456777888888888778777777556532 21 1556677777776655442222111 112333333333333
Q ss_pred HHHhhcccccchhhcccCCCcchhhhhhHHHHHHH-HHHHHHHHHHHHHHHHh------------hchhHHHHHHHHhhH
Q psy15226 207 AASYYGIGCLPNILVSELFPINVRCQASSCASVAL-AFGSFITTKFHILITKS------------LGQHVIFFIYSSVHF 273 (362)
Q Consensus 207 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~-~ig~~~~~~~~~~~~~~------------~g~~~~~~~~~~~~~ 273 (362)
..+-....|+..++++++.|++.||..+|+..... .+|+.++..+.+..... ..+...|...+...+
T Consensus 388 t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 467 (493)
T PRK15462 388 GFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTSQASFDASGAINYSINAYIEVFDQITWGAL 467 (493)
T ss_pred HHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccccccchhhhHHHHHHHHHHHHH
Confidence 33337778888899999999999999999986633 56666666665544210 123345666666555
Q ss_pred hH-Hhhhheee
Q psy15226 274 CS-VVFNYFYL 283 (362)
Q Consensus 274 i~-~~~~~~~~ 283 (362)
++ .++.+.++
T Consensus 468 ~~~~~~~~~~~ 478 (493)
T PRK15462 468 ACVGVVLMIWL 478 (493)
T ss_pred HHHHHHHHHHH
Confidence 55 44443443
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.32 E-value=8.9e-05 Score=64.97 Aligned_cols=183 Identities=12% Similarity=0.023 Sum_probs=113.6
Q ss_pred cchhhhccCcchhHHHHHHHHHHHHHhhhhHHHHHHhHHHHhhh-cCCCCCchhHHHHHHHHHHHHHHHHHHHHhh-hcC
Q psy15226 86 TGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPK-LDNAYFGPDQCILVFMIIMFLSNFLQAPLMD-ILG 163 (362)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-r~g 163 (362)
..++++..+|+.++.+.. .++... +++..-..+..|-.+ +|++..+.+..+...+.+..+|....|++.. |.+
T Consensus 199 ~a~~~~~~~~~a~~f~~f-l~l~t~----a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~ 273 (403)
T PF03209_consen 199 EAWRQVWASPQARRFFVF-LFLGTL----AFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLG 273 (403)
T ss_pred HHHHHHHhCCChhHHHHH-HHHHHH----HHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 345666666544433332 222221 122233333333333 4899999999999999999999999998877 677
Q ss_pred CchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHH
Q psy15226 164 RKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAF 243 (362)
Q Consensus 164 rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~i 243 (362)
+++....++...+++...+.... ...+.+.......+++.+.+.+....-+.+.++.++++.|..+|.....+.+
T Consensus 274 ~~~~a~~G~~~~~~~f~lii~a~-----~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~ 348 (403)
T PF03209_consen 274 KKRTAALGCLLGALAFALIILAG-----PLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAI 348 (403)
T ss_pred chHHHHHHHHHHHHHHHHHHHHH-----hcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHH
Confidence 77777788888777776655422 1223444444455555544222222225677888888899999999988888
Q ss_pred HHHHHHHHHHHHHHhh----------chhHHHHHHHHhhHhHHhh
Q psy15226 244 GSFITTKFHILITKSL----------GQHVIFFIYSSVHFCSVVF 278 (362)
Q Consensus 244 g~~~~~~~~~~~~~~~----------g~~~~~~~~~~~~~i~~~~ 278 (362)
...++..++|.+.|.. +|...|.+-++..+++..+
T Consensus 349 A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~l 393 (403)
T PF03209_consen 349 ARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVL 393 (403)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHH
Confidence 8888888887776531 2344455555555554433
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=98.28 E-value=6.5e-05 Score=67.52 Aligned_cols=241 Identities=12% Similarity=0.022 Sum_probs=131.2
Q ss_pred CchhhHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhc----c-CCChHHHHhcCCHHHHHHHHHhHcCCccc-HHHHHHHH
Q psy15226 1 MVGTLAILLIGNHVSYNSLNIALSILPVIFFILFSF----V-PETPHFHAAKNNLKKTEKSLKWYRGNKKD-VMEEMNSI 74 (362)
Q Consensus 1 ~~G~~~~~~l~~~~~Wr~~f~~~~~~~~~~~~~~~~----l-pesp~~l~~~~~~~~a~~~l~~~~~~~~~-~~~~~~~~ 74 (362)
++||++.+.+....|.+....+.+...++....=++ + ...|. |..+++.++.+..-+.....+.+ .....+..
T Consensus 163 llaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~-L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (432)
T PF06963_consen 163 LLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFLLARVYNSVPA-LAVKKRSSESESSSDEESSSESSSDPSILKRL 241 (432)
T ss_pred HHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-hcCCCCCccccccccccccccccchhhHHHHH
Confidence 367888888888788888777777777775553222 2 33343 22222211111000000000000 00011111
Q ss_pred HHHHhhccccccchhhhccCcchhHHHHHHHHHHHHHhhhhHHHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHH
Q psy15226 75 MDKTQEDLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFL 154 (362)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 154 (362)
++. -+....+|+..++++.+...+-.+++.... ..+...+..|+...|+++...+..-....+.++.+.+.
T Consensus 242 ~~~---~~~~~~~w~~Y~~q~vflas~alalLY~TV------Lsf~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~ 312 (432)
T PF06963_consen 242 WNP---LRTIIRGWRTYFRQPVFLASFALALLYFTV------LSFGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWV 312 (432)
T ss_pred HHH---HHHHhccHHHHHhCHHHHHHHHHHHHHHHH------hcCcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 111 112234566666654333332222222222 22334455667777999888888889999999999999
Q ss_pred HHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCC--CCcchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhh
Q psy15226 155 QAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGEL--PNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQ 232 (362)
Q Consensus 155 ~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~ 232 (362)
..++.+|+|..+.=.++......+..+....+..+..+ ..+....+..+...-.|.-++-....-++.|..|+++||.
T Consensus 313 ~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~ 392 (432)
T PF06963_consen 313 YPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGA 392 (432)
T ss_pred HHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhH
Confidence 99999999998887777777766666655444433111 0011111111222222222222233367899999999999
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q psy15226 233 ASSCASVALAFGSFITTKF 251 (362)
Q Consensus 233 ~~~~~~~~~~ig~~~~~~~ 251 (362)
..|+-+..+++...+.-.+
T Consensus 393 v~gvq~sl~~lf~ll~~~~ 411 (432)
T PF06963_consen 393 VSGVQNSLQSLFELLSFVL 411 (432)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999888877766655443
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=98.23 E-value=6.8e-06 Score=54.65 Aligned_cols=63 Identities=14% Similarity=0.154 Sum_probs=54.3
Q ss_pred hhhhHHHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHh
Q psy15226 112 RLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAAL 174 (362)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~ 174 (362)
.+.+......|.|.++++.|++..+.+....+..+...++++++|.++||+++++..+.....
T Consensus 12 ~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~ 74 (77)
T PF12832_consen 12 YFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF 74 (77)
T ss_pred HHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence 334456778899999999999999999999999999999999999999999999877665443
|
|
| >KOG4662|consensus | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.9e-06 Score=59.82 Aligned_cols=57 Identities=46% Similarity=0.986 Sum_probs=51.0
Q ss_pred cccccccccCCCCCCCCCCCCCCCccchHHHHHHHHHHHhhhheeeeEecccccccc
Q psy15226 301 SHKQLRREKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSPLIKQK 357 (362)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (362)
+.....+||.+++||+++|.+..|.+++.||++.++.|++|+++++++.|++...+.
T Consensus 32 s~~~~~~EKsspYECGFdP~~~arlpFsirfflvaI~FliFDLEi~~~lp~~l~~d~ 88 (122)
T KOG4662|consen 32 STSSVGKEKSSPYECGFDPLGDARLPFSIRFFLVAITFLIFDLEIVLLLPGALPQDM 88 (122)
T ss_pred hhcccChhcCCccccCCCcCccccCchhhHHHHHHHHHHHHhhHHHhhCccccchhh
Confidence 344456788899999999999999999999999999999999999999999887664
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.19 E-value=8.3e-05 Score=66.92 Aligned_cols=166 Identities=14% Similarity=0.120 Sum_probs=108.7
Q ss_pred HHHHHhHHHHhhhc-CCCCCchhHHHHHHHHHHHHHHHHHHHHhhh----cCCc-hhhhhhhHhHHHHHHHHHHHHHHhc
Q psy15226 117 TSMITYSSTLLPKL-DNAYFGPDQCILVFMIIMFLSNFLQAPLMDI----LGRK-PLSCFSAALGCLLTFSTGLFYLYQG 190 (362)
Q Consensus 117 ~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~grr-~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (362)
.....|+..++.+. |.++..++.+..+.-+.-++.-++.|.++|| +||+ +.++.+.+..++...++.. ..+.
T Consensus 29 ~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~--~p~~ 106 (467)
T COG2211 29 GIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFI--TPDF 106 (467)
T ss_pred HHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHc--CCCc
Confidence 45566777777766 9998888888888889999999999999996 4654 4555666666666655433 0000
Q ss_pred CCCCcchHHHHHHHHHHHHh-hcccccchhhcccCCC-cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh-------ch
Q psy15226 191 ELPNFQYIPYITTLLYAASY-YGIGCLPNILVSELFP-INVRCQASSCASVALAFGSFITTKFHILITKSL-------GQ 261 (362)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~~p-~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~-------g~ 261 (362)
+.........+...++..++ ....|-. ++.+|+.+ +++|.+..+.-..+..+|..+...+.+.+.... ||
T Consensus 107 ~~~~k~~ya~vtY~l~~l~YT~vniPy~-al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~ 185 (467)
T COG2211 107 SMTGKLIYALVTYMLLGLGYTLVNIPYG-ALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGY 185 (467)
T ss_pred ccCcchHHHHHHHHHHHHHHHheeCchh-hcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhH
Confidence 01123333344445555555 4444443 77788764 678999999999999999888888877776543 45
Q ss_pred hHHHHHHHHhhHhHHhhhheeecc
Q psy15226 262 HVIFFIYSSVHFCSVVFNYFYLME 285 (362)
Q Consensus 262 ~~~~~~~~~~~~i~~~~~~~~~~e 285 (362)
+....+++++..+..+++++-.+|
T Consensus 186 ~~~~~~~~vi~~i~~l~~~~~v~E 209 (467)
T COG2211 186 QGTALVLGVIGVILLLFCFFNVKE 209 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 555555666655565555544444
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.8e-06 Score=77.30 Aligned_cols=153 Identities=13% Similarity=0.109 Sum_probs=88.1
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhc---CCCCcchHHHHHHHHHHH
Q psy15226 132 NAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQG---ELPNFQYIPYITTLLYAA 208 (362)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 208 (362)
+++...+....+..++..+|..+.....-+..-|+++....+..++..+.-..+..-.+ +-++. +..+.--.+...
T Consensus 252 fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~-~f~lgd~~l~~~ 330 (433)
T PF03092_consen 252 FSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQ-WFALGDTILEEV 330 (433)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCe-EEEEEhHHHHHH
Confidence 55444555666666777777777766665666677666655554444332111000000 00111 211222222222
Q ss_pred Hh-hcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhch--------hHHHHHHHHhhHhHHhhh
Q psy15226 209 SY-YGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQ--------HVIFFIYSSVHFCSVVFN 279 (362)
Q Consensus 209 ~~-~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g~--------~~~~~~~~~~~~i~~~~~ 279 (362)
.. ..+.|.. .+++|+.|+..-|+..++...+.++|..++..++..+.+..+. ....++..++.++...+.
T Consensus 331 ~~~i~~mP~l-vl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~ll 409 (433)
T PF03092_consen 331 IGMIAFMPSL-VLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPLL 409 (433)
T ss_pred HHHHHHHHHH-HHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHH
Confidence 33 4455665 7899999999999999999999999999999999888776552 223444455554444443
Q ss_pred heeeccCC
Q psy15226 280 YFYLMETK 287 (362)
Q Consensus 280 ~~~~~e~~ 287 (362)
.++|+.+
T Consensus 410 -~lLp~~~ 416 (433)
T PF03092_consen 410 -FLLPPQK 416 (433)
T ss_pred -HHcCCCc
Confidence 4556543
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=98.17 E-value=3.7e-07 Score=84.81 Aligned_cols=167 Identities=10% Similarity=0.032 Sum_probs=0.0
Q ss_pred chhhhccCcchhHHHHHHHHHHHHHhhhhHHHHHHhHHHHhhhc-CCCCCchhHHHHHHH-HHHHHHHHHHHHHhhhcC-
Q psy15226 87 GYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKL-DNAYFGPDQCILVFM-IIMFLSNFLQAPLMDILG- 163 (362)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~-~~~~~~~~~~g~l~dr~g- 163 (362)
..+++++||. .+...+..........++.+|.|.|++.. +.++.+++.+..... .+.++|.+++|++..|++
T Consensus 297 ~l~~Ll~Np~-----f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl 371 (539)
T PF03137_consen 297 ALKRLLTNPV-----FMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKL 371 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhcChH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecC
Confidence 4555666543 33333333333344577889999999876 888777776665444 367899999999999984
Q ss_pred -CchhhhhhhHhHHHHHHHHHHHHHH--hc--------CC----------------------------------C-Ccch
Q psy15226 164 -RKPLSCFSAALGCLLTFSTGLFYLY--QG--------EL----------------------------------P-NFQY 197 (362)
Q Consensus 164 -rr~~~~~~~~~~~~~~~~~~~~~~~--~~--------~~----------------------------------~-~~~~ 197 (362)
.|.......+...++.+.....+.. ++ .. . ....
T Consensus 372 ~~~~~~~~~~v~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~ 451 (539)
T PF03137_consen 372 SARGAAKFCIVVSIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKL 451 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCccccccc
Confidence 3444444444333333321111111 00 00 0 0011
Q ss_pred HHHHHH-HHHHHHh-hcccccchhhcccCCCcchhhhhhHHHHHHH-HHHHHHHHHHHHHHHHhh
Q psy15226 198 IPYITT-LLYAASY-YGIGCLPNILVSELFPINVRCQASSCASVAL-AFGSFITTKFHILITKSL 259 (362)
Q Consensus 198 ~~~~~~-~~~~~~~-~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~-~ig~~~~~~~~~~~~~~~ 259 (362)
..+... ++..+.. ....|.. ...-...|+++|+.|.|+...+. -+|.+-+|.++|.++|..
T Consensus 452 ~~Fl~~~~~~~~~~~~~~~p~~-~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~t 515 (539)
T PF03137_consen 452 IPFLILLFILSFFTFMSQVPST-LITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDST 515 (539)
T ss_dssp -----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHhcccchh-eeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhhh
Confidence 111111 1111111 3333333 44567789999999999987665 467789999999988853
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG2816|consensus | Back alignment and domain information |
|---|
Probab=98.02 E-value=6e-05 Score=68.58 Aligned_cols=119 Identities=13% Similarity=0.025 Sum_probs=90.0
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHHHHH-HHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHH
Q psy15226 130 LDNAYFGPDQCILVFMIIMFLSNFLQA-PLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAA 208 (362)
Q Consensus 130 ~g~~~~~~~~~~~~~~~~~~~~~~~~g-~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (362)
++++..+.+...+..+....+++++.. .+...+|-|++...|.....+..+..++ .+..+..+........
T Consensus 272 f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af--------~~~~w~~~~~~v~~~~ 343 (463)
T KOG2816|consen 272 FGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAF--------ATETWMMFAAGVVVAL 343 (463)
T ss_pred cCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHH--------hccchhhhHHHHHHHh
Confidence 488888888888888888888888877 7777889888888888888888888777 2233443333333222
Q ss_pred HhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy15226 209 SYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITK 257 (362)
Q Consensus 209 ~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~ 257 (362)
. ....+...+..+-+.+++.+|++.++......+.+.++|.+.+.+..
T Consensus 344 ~-~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~ 391 (463)
T KOG2816|consen 344 A-GIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFA 391 (463)
T ss_pred h-cchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHH
Confidence 2 33344555788888899999999999999999999999999887754
|
|
| >MTH00092 ND3 NADH dehydrogenase subunit 3; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=2.1e-06 Score=61.25 Aligned_cols=48 Identities=44% Similarity=0.838 Sum_probs=44.2
Q ss_pred ccccCCCCCCCCCCCCCCCccchHHHHHHHHHHHhhhheeeeEecccc
Q psy15226 306 RREKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSPL 353 (362)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (362)
+++|.+++||+.++.++.|.+++.|||+.+++|++|++|++++.|+..
T Consensus 31 ~~~K~s~yECGf~p~~~~r~~Fsi~FfliailFliFDvEiv~l~P~~~ 78 (111)
T MTH00092 31 DLLKVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEIVMFLGLLV 78 (111)
T ss_pred CcccCCccCCCCCCCCCccCccceehHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778999999999999999999999999999999999999999864
|
|
| >PRK06432 NADH dehydrogenase subunit A; Validated | Back alignment and domain information |
|---|
Probab=97.99 E-value=1.7e-06 Score=63.06 Aligned_cols=52 Identities=19% Similarity=0.365 Sum_probs=46.3
Q ss_pred cccccccCCCCCCCCCCCCCCCccchHHHHHHHHHHHhhhheeeeEeccccc
Q psy15226 303 KQLRREKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSPLI 354 (362)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (362)
+..++++.+++||+.++.++.+.+++.+||+.+++|++|++|++++.||...
T Consensus 57 ~~~~~~k~spYECGFdp~g~~r~~FSirFfLIAILFLIFDVEIvlLfPwa~~ 108 (144)
T PRK06432 57 PGSDQSYLEPYESGEVAREIWGGPSINQYYIVVLLFVVFDVDMLLLFPWAFD 108 (144)
T ss_pred CCCCcCCCcCccCCCCCCCCccCccceehHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446678889999999999889999999999999999999999999998653
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00043 Score=63.68 Aligned_cols=144 Identities=14% Similarity=0.101 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHH-HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhcccccc
Q psy15226 139 QCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGC-LLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLP 217 (362)
Q Consensus 139 ~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (362)
+..++..+...+..++.|.++|+-|+|+.++....... ++...+.+ ..++..+...+...+...++.......
T Consensus 74 ~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~------v~~~~~~~~~~l~iia~v~~~~~~vfy 147 (477)
T PF11700_consen 74 YANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWF------VSPGQWWLALVLFIIANVGYEASNVFY 147 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHH------hCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677888889999999999999998877665544443 34444333 122333333333344444443333444
Q ss_pred hhhcccCCCcchh--------------------------hhhhHHHHHHHHHHHHHHHHHHHHHHHhh--------chhH
Q psy15226 218 NILVSELFPINVR--------------------------CQASSCASVALAFGSFITTKFHILITKSL--------GQHV 263 (362)
Q Consensus 218 ~~~~~e~~p~~~r--------------------------~~~~~~~~~~~~ig~~~~~~~~~~~~~~~--------g~~~ 263 (362)
.+++.|+.+++.+ ++..+.....+++|+.+.-.+.-.+.... +.+.
T Consensus 148 na~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~ 227 (477)
T PF11700_consen 148 NAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRV 227 (477)
T ss_pred HHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhH
Confidence 5899999988888 89999999999999888777654443222 2366
Q ss_pred HHHHHHHhhHhHHhhhheeeccCCC
Q psy15226 264 IFFIYSSVHFCSVVFNYFYLMETKQ 288 (362)
Q Consensus 264 ~~~~~~~~~~i~~~~~~~~~~e~~~ 288 (362)
.+.+.++..++..+..+++.|+.++
T Consensus 228 ~~~~~a~ww~vfsiP~~~~~~~~~~ 252 (477)
T PF11700_consen 228 AFLIVALWWLVFSIPLFLWLPDRPG 252 (477)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 6777777766666666677777644
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00013 Score=64.06 Aligned_cols=120 Identities=13% Similarity=0.057 Sum_probs=75.9
Q ss_pred HHHHHHHHHHhhhcC-----Cchhhhh-hhHhHHHHHHHHHHHHHHhcC----CCCcchHH----HHHHHHHHHHhhccc
Q psy15226 149 FLSNFLQAPLMDILG-----RKPLSCF-SAALGCLLTFSTGLFYLYQGE----LPNFQYIP----YITTLLYAASYYGIG 214 (362)
Q Consensus 149 ~~~~~~~g~l~dr~g-----rr~~~~~-~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~----~~~~~~~~~~~~~~~ 214 (362)
.+..+..|+.||+.+ ||..+++ |...+..+..+.......... ...+.+.. .....+++.+....+
T Consensus 28 ap~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~g~~~a~l~F~l~G~G~~~s~ 107 (403)
T PF03209_consen 28 APLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWLGLALAALAFLLYGLGVHASG 107 (403)
T ss_pred HHHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHhhHhHhH
Confidence 456789999999988 7766554 555555544444432222211 11122221 122333344432223
Q ss_pred ccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHH
Q psy15226 215 CLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIY 268 (362)
Q Consensus 215 ~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~~~ 268 (362)
....++++|..|+++|+++.++.....-+|.+++..+.+.+.+.+......-+.
T Consensus 108 T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~ 161 (403)
T PF03209_consen 108 TSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVI 161 (403)
T ss_pred HHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHH
Confidence 333488999999999999999999999999999999999998877654333333
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=97.91 E-value=8e-05 Score=67.03 Aligned_cols=135 Identities=10% Similarity=0.052 Sum_probs=74.4
Q ss_pred HhhhhHHHHHHhHHHHhhhcCCC-CCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHh
Q psy15226 111 QRLGGITSMITYSSTLLPKLDNA-YFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQ 189 (362)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~ 189 (362)
...++++-...|.-.+-++..-+ +.-.+.+-.+..+.+.++++..|++-.++.+-..+.++.....-+.+++..
T Consensus 273 ~a~~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m----- 347 (511)
T TIGR00806 273 FNSAGYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWM----- 347 (511)
T ss_pred HHhhHHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhh-----
Confidence 33344555666666555554221 112345556667778888888998866553322333332222222222111
Q ss_pred cCCCCcchHHHHHHHHHHHHh-hcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHH
Q psy15226 190 GELPNFQYIPYITTLLYAASY-YGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFH 252 (362)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~ 252 (362)
...++-+...+...++...+ ... ++...-++.....+.-|...|++++..-+-..+...+.
T Consensus 348 -~~t~~Iw~~Y~~yvlf~~~y~fli-tia~~~iA~~L~~~~~aLvFGiNtfvAl~LQtilT~iV 409 (511)
T TIGR00806 348 -SQSHDIWVLYVTYVLFRGIYQFLV-PIATFQIASSLSKELCALVFGINTFVATALKTIITAVV 409 (511)
T ss_pred -hcccchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcccceEEEEecHHHHHHHHHHheEEEE
Confidence 23456666667777777776 433 33334555556666668888888887776666555443
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >MTH00113 ND3 NADH dehydrogenase subunit 3; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=5.6e-06 Score=59.65 Aligned_cols=48 Identities=50% Similarity=1.140 Sum_probs=43.6
Q ss_pred ccccCCCCCCCCCCCCCCCccchHHHHHHHHHHHhhhheeeeEecccc
Q psy15226 306 RREKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSPL 353 (362)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (362)
+++|.+++||+.++.++.+.+++.|||+.+++|++|++|++++.|.+.
T Consensus 30 ~~~k~s~yECGf~~~~~~~~~fsi~FfliailFliFDvEi~~l~P~~~ 77 (114)
T MTH00113 30 DNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPW 77 (114)
T ss_pred CcccCCeecCCcCCCccccccCCchHHHHHHHHHHHHHHHHHHhhHhh
Confidence 566778999999999999999999999999999999999999999543
|
|
| >KOG2563|consensus | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00024 Score=62.75 Aligned_cols=124 Identities=15% Similarity=0.148 Sum_probs=85.3
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcch--HHHHHHHHHHHHh
Q psy15226 133 AYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQY--IPYITTLLYAASY 210 (362)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 210 (362)
+...+.|.+.++.+.+++..+.+.|+.|++|-|...+++..+.+++..+=.+.... .-++..+ .....-.+.....
T Consensus 77 s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p--~v~~~f~~~l~~~Gq~iaa~Aq 154 (480)
T KOG2563|consen 77 SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLP--FVPPLFRRPLTHTGQSIAAAAQ 154 (480)
T ss_pred chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCc--cccccchhhhhHHhHHHHHHhh
Confidence 44667799999999999999999999999999999999999988887765441100 0012222 2222222222222
Q ss_pred hcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15226 211 YGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKS 258 (362)
Q Consensus 211 ~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~ 258 (362)
.....++.-...-+||+++|+.+..+..+.+.+|.+++..+.+.+..+
T Consensus 155 ~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~ 202 (480)
T KOG2563|consen 155 PFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPS 202 (480)
T ss_pred hHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCC
Confidence 112223324556679999999999999999899998888877666554
|
|
| >MTH00202 ND3 NADH dehydrogenase subunit 3; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=6e-06 Score=59.56 Aligned_cols=50 Identities=58% Similarity=1.200 Sum_probs=44.8
Q ss_pred cccccCCCCCCCCCCCCCCCccchHHHHHHHHHHHhhhheeeeEeccccc
Q psy15226 305 LRREKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSPLI 354 (362)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (362)
.+++|.+++||+.++.++.+.+++.|||..++.|++|++|++++.|++..
T Consensus 31 ~~~~k~s~yECGf~p~~~~~~~Fsi~FfliallFliFDvEi~~l~P~~~~ 80 (117)
T MTH00202 31 MDREKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLV 80 (117)
T ss_pred CCcccCcccCCCcCCCccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677789999999999899999999999999999999999999998643
|
|
| >CHL00022 ndhC NADH dehydrogenase subunit 3 | Back alignment and domain information |
|---|
Probab=97.86 E-value=6e-06 Score=59.89 Aligned_cols=48 Identities=27% Similarity=0.782 Sum_probs=43.7
Q ss_pred ccccCCCCCCCCCCCCCCCccchHHHHHHHHHHHhhhheeeeEecccc
Q psy15226 306 RREKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSPL 353 (362)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (362)
+++|.+++||+.++.++.+.+++.||+..++.|++|++|+.++.||..
T Consensus 37 ~~~k~s~yECGf~p~~~~~~~fsv~FfliallFliFDvEii~l~P~~~ 84 (120)
T CHL00022 37 GPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAM 84 (120)
T ss_pred CcccCCCcCCCCCCCCCCCCccceeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778899999999999999999999999999999999999999854
|
|
| >COG0838 NuoA NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.85 E-value=1e-05 Score=58.03 Aligned_cols=56 Identities=30% Similarity=0.813 Sum_probs=49.1
Q ss_pred cccccccCCCCCCCCCCCCCCCccchHHHHHHHHHHHhhhheeeeEecccccccce
Q psy15226 303 KQLRREKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSPLIKQKI 358 (362)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (362)
++++++|..++|++.++.++.+.+++.+|++.++.|+.|+++++++.||..+.+++
T Consensus 35 ~~~~~~K~~~YE~G~~p~g~a~~~f~~qyyl~ailFvvFDie~~fl~pwav~~~~l 90 (123)
T COG0838 35 RRPNPEKLSPYECGNPPFGGARLRFSVQYYLVAILFVVFDVEVVFLFPWAVSFKEL 90 (123)
T ss_pred CCCCccccCccccCCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33466777799999999999999999999999999999999999999998776643
|
|
| >MTH00136 ND3 NADH dehydrogenase subunit 3; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=5.6e-06 Score=59.73 Aligned_cols=47 Identities=53% Similarity=1.179 Sum_probs=43.0
Q ss_pred ccccCCCCCCCCCCCCCCCccchHHHHHHHHHHHhhhheeeeEeccc
Q psy15226 306 RREKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSP 352 (362)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (362)
+++|.+++||+.++.++.+.+++.|||+.+++|++|++|++++.|++
T Consensus 31 ~~~K~s~yECGf~p~~~~~~~fsi~FfliallFliFDvEi~~l~P~~ 77 (116)
T MTH00136 31 DHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLP 77 (116)
T ss_pred CcCCCccccCCCCCCCCccccCceehHHHHHHHHHHHHHHHHHhhHH
Confidence 45677899999999999999999999999999999999999999954
|
|
| >MTH00030 ND3 NADH dehydrogenase subunit 3; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=1.5e-05 Score=57.62 Aligned_cols=49 Identities=43% Similarity=0.950 Sum_probs=44.3
Q ss_pred cccccCCCCCCCCCCCCCCCccchHHHHHHHHHHHhhhheeeeEecccc
Q psy15226 305 LRREKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSPL 353 (362)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (362)
.+.+|.+++||+.++.++.+.+++.+||..+++|++|++|++++.|+..
T Consensus 39 ~~~~k~spyECGf~p~~~~~~~Fsi~FfliallFliFDlEivll~P~a~ 87 (123)
T MTH00030 39 PDSEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFLFPWSI 87 (123)
T ss_pred CCcccCccccCCCCCCCCccCccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778999999999999999999999999999999999999999864
|
|
| >MTH00148 ND3 NADH dehydrogenase subunit 3; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=6.1e-06 Score=59.66 Aligned_cols=49 Identities=59% Similarity=1.129 Sum_probs=44.5
Q ss_pred ccccCCCCCCCCCCCCCCCccchHHHHHHHHHHHhhhheeeeEeccccc
Q psy15226 306 RREKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSPLI 354 (362)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (362)
+++|.+++||+.++.++.|.+++.+||..++.|++|++|++++.|++..
T Consensus 32 ~~~K~s~yECGf~p~~~~~~~Fsi~FfliallFliFDvEiv~l~P~~~~ 80 (117)
T MTH00148 32 DREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQS 80 (117)
T ss_pred CcccCccccCCcCCCCCCcCcCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567789999999999999999999999999999999999999998643
|
|
| >MTH00055 ND3 NADH dehydrogenase subunit 3; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=7e-06 Score=59.40 Aligned_cols=48 Identities=48% Similarity=1.025 Sum_probs=43.8
Q ss_pred ccccCCCCCCCCCCCCCCCccchHHHHHHHHHHHhhhheeeeEecccc
Q psy15226 306 RREKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSPL 353 (362)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (362)
+++|.+++||+.++.++.+.+++.|||..++.|++|++|++++.|+..
T Consensus 35 ~~~k~s~yECGf~p~~~~~~~Fsi~FfliallFliFDvEivll~P~av 82 (118)
T MTH00055 35 DSEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLFPWCV 82 (118)
T ss_pred CcccCCccccCcCCCccccCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778899999999989999999999999999999999999999853
|
|
| >MTH00042 ND3 NADH dehydrogenase subunit 3; Validated | Back alignment and domain information |
|---|
Probab=97.83 E-value=6.4e-06 Score=59.44 Aligned_cols=49 Identities=51% Similarity=1.134 Sum_probs=44.4
Q ss_pred ccccCCCCCCCCCCCCCCCccchHHHHHHHHHHHhhhheeeeEeccccc
Q psy15226 306 RREKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSPLI 354 (362)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (362)
+++|.+++||+.++.++.+.+++.|||..++.|++|++|++++.|++..
T Consensus 31 ~~~k~s~yECGf~~~~~~~~~fsi~ffliallFliFDvEi~~l~P~~~~ 79 (116)
T MTH00042 31 DLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPA 79 (116)
T ss_pred CcccCccccCCCCCCCccccCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566789999999999899999999999999999999999999998654
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00018 Score=65.61 Aligned_cols=157 Identities=19% Similarity=0.172 Sum_probs=98.6
Q ss_pred HHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhc-----CCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcch
Q psy15226 123 SSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDIL-----GRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQY 197 (362)
Q Consensus 123 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (362)
.|.+.++.|.++.+.........+. -...++.|.++|-+ .||+.++++.++..++.+.++... ....+..
T Consensus 13 ~~~l~~~l~ls~~~~~~~~~~~~lP-w~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~----~~~~s~~ 87 (433)
T PF03092_consen 13 YPFLKDDLGLSPAQLQRLSSLASLP-WSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLP----ASESSAA 87 (433)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHhCc-hHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcc----cccchhh
Confidence 3455566788866655544444443 34567889999976 355666667766665555554411 0111222
Q ss_pred HHHHHHHHHHHHhhcccccchhhcccCC---CcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhHh
Q psy15226 198 IPYITTLLYAASYYGIGCLPNILVSELF---PINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFC 274 (362)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~---p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i 274 (362)
...+.+.+...+........-++..|.. |.+ ||...+.......+|+.++..+.|.+.+..+++..|.+.+.+..+
T Consensus 88 ~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l 166 (433)
T PF03092_consen 88 IAVVLLFLASFGYAFADVAADALVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLL 166 (433)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHH
Confidence 2223333333333222233336667765 443 788888888899999999999999999999999888888877777
Q ss_pred HHhhhheeecc
Q psy15226 275 SVVFNYFYLME 285 (362)
Q Consensus 275 ~~~~~~~~~~e 285 (362)
..+...+..+|
T Consensus 167 ~~~~~~~~~~e 177 (433)
T PF03092_consen 167 MLIVALFLLEE 177 (433)
T ss_pred HHHHHHHhhhh
Confidence 76665555555
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >MTH00018 ND3 NADH dehydrogenase subunit 3; Validated | Back alignment and domain information |
|---|
Probab=97.79 E-value=8.6e-06 Score=58.53 Aligned_cols=47 Identities=51% Similarity=1.040 Sum_probs=43.1
Q ss_pred ccccCCCCCCCCCCCCCCCccchHHHHHHHHHHHhhhheeeeEeccc
Q psy15226 306 RREKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSP 352 (362)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (362)
+++|.+++||+.++.++.+.+++.||+..++.|++|++|++++.||.
T Consensus 30 ~~~k~s~yECGf~~~~~~~~~fsi~ffliailFliFDlEi~~l~P~a 76 (113)
T MTH00018 30 DREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFLFPWC 76 (113)
T ss_pred CcccCcccccCcCCCcccccCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667889999999998999999999999999999999999999985
|
|
| >PRK07756 NADH dehydrogenase subunit A; Validated | Back alignment and domain information |
|---|
Probab=97.78 E-value=1.3e-05 Score=58.46 Aligned_cols=48 Identities=27% Similarity=0.733 Sum_probs=43.8
Q ss_pred ccccCCCCCCCCCCCCCCCccchHHHHHHHHHHHhhhheeeeEecccc
Q psy15226 306 RREKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSPL 353 (362)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (362)
+.+|.+++||+.++.++.|.+++.+||..++.|++|++|++++.||..
T Consensus 39 ~~~K~~~yECGf~p~~~~~~~fsi~fyliallFliFDvEiv~l~P~a~ 86 (122)
T PRK07756 39 SAAKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLYPWAV 86 (122)
T ss_pred CcccCCCcCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778899999999999999999999999999999999999999854
|
|
| >PRK06602 NADH:ubiquinone oxidoreductase subunit A; Validated | Back alignment and domain information |
|---|
Probab=97.77 E-value=9.8e-06 Score=58.99 Aligned_cols=49 Identities=37% Similarity=0.901 Sum_probs=44.6
Q ss_pred ccccCCCCCCCCCCCCCCCccchHHHHHHHHHHHhhhheeeeEeccccc
Q psy15226 306 RREKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSPLI 354 (362)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (362)
+++|.+++||+.++.++.+.+++.+||..++.|++|++|++++.||...
T Consensus 38 ~~~K~s~yECGf~p~~~~~~~fsi~ffliallFliFDvEi~~l~P~a~~ 86 (121)
T PRK06602 38 DREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFLFPWAVS 86 (121)
T ss_pred CCCCCcccCCCcCCCcccccCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667789999999999999999999999999999999999999998643
|
|
| >MTH00203 ND3 NADH dehydrogenase subunit 3; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=1.1e-05 Score=57.92 Aligned_cols=47 Identities=55% Similarity=1.148 Sum_probs=42.6
Q ss_pred ccccCCCCCCCCCCCCCCCccchHHHHHHHHHHHhhhheeeeEeccc
Q psy15226 306 RREKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSP 352 (362)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (362)
+++|.+++||+.++.++.+.+++.|||..+++|++|++|++++.|+.
T Consensus 31 ~~~K~s~yECGf~~~~~~~~~fsi~FfliailFliFDvEi~~l~P~~ 77 (112)
T MTH00203 31 DGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLP 77 (112)
T ss_pred CcccCcccCCCcCCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667789999999988999999999999999999999999999954
|
|
| >MTH00106 ND3 NADH dehydrogenase subunit 3; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=8.9e-06 Score=58.65 Aligned_cols=47 Identities=51% Similarity=1.142 Sum_probs=42.8
Q ss_pred ccccCCCCCCCCCCCCCCCccchHHHHHHHHHHHhhhheeeeEeccc
Q psy15226 306 RREKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSP 352 (362)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (362)
+++|.+++||+.++.++.|.+++.|||+.++.|++|++|+.++.|++
T Consensus 30 ~~~k~s~yECGf~~~~~~~~~fs~~FfliallFliFDvEiv~l~P~~ 76 (115)
T MTH00106 30 YSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLP 76 (115)
T ss_pred CcCCCCccCCCCCCCCcccccCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667899999999999999999999999999999999999999954
|
|
| >PRK06073 NADH dehydrogenase subunit A; Validated | Back alignment and domain information |
|---|
Probab=97.76 E-value=3.1e-05 Score=56.08 Aligned_cols=53 Identities=17% Similarity=0.365 Sum_probs=47.2
Q ss_pred ccccccCCCCCCCCCCCCCCCccchHHHHHHHHHHHhhhheeeeEeccccccc
Q psy15226 304 QLRREKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSPLIKQ 356 (362)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (362)
+++++|.+++||+.++.++.+.+++.+||..++.|++|+++++++.||....+
T Consensus 35 ~~~~~K~~~YEcG~~p~g~~r~~f~i~yyl~allFliFDvEvvfLfP~av~~~ 87 (124)
T PRK06073 35 KPTPLKVSRYEAGNPPTGPAKLWLPMQYYGYLLLFLTLEPIVVLLLLIAFAPY 87 (124)
T ss_pred CCCcccCCcccCCCCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34566778899999999999999999999999999999999999999987655
|
|
| >MTH00012 ND3 NADH dehydrogenase subunit 3; Validated | Back alignment and domain information |
|---|
Probab=97.75 E-value=1.2e-05 Score=58.10 Aligned_cols=48 Identities=63% Similarity=1.194 Sum_probs=43.6
Q ss_pred ccccCCCCCCCCCCCCCCCccchHHHHHHHHHHHhhhheeeeEecccc
Q psy15226 306 RREKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSPL 353 (362)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (362)
+++|.+++||+.++.++.|.+++.|||..+++|++|++|++++.|+..
T Consensus 32 ~~~k~spyECGf~p~~~~~~~fsi~FfliallFliFDvEi~~l~P~~~ 79 (117)
T MTH00012 32 DREKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPT 79 (117)
T ss_pred CcccCcccCCCcCCCcccCCCCChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778999999999999999999999999999999999999999753
|
|
| >MTH00069 ND3 NADH dehydrogenase subunit 3; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=1.5e-05 Score=57.28 Aligned_cols=46 Identities=50% Similarity=1.161 Sum_probs=42.3
Q ss_pred ccccCCCCCCCCCCCCCCCccchHHHHHHHHHHHhhhheeeeEecc
Q psy15226 306 RREKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPS 351 (362)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (362)
+++|.+++||+.++.++.+.+++.|||+.++.|++|++|++++.|.
T Consensus 29 ~~~K~s~yECGf~p~~~~~~~fs~~FfliallFliFDvEi~~l~P~ 74 (114)
T MTH00069 29 DSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPT 74 (114)
T ss_pred CcCcCCcCCCCcCCCCCccCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788999999999999999999999999999999999999994
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0094 Score=53.85 Aligned_cols=165 Identities=13% Similarity=0.039 Sum_probs=96.9
Q ss_pred HHHHHhHHHHhhhc--CCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCc--h-----hhhhhhHhHHHHHHHHHHHHH
Q psy15226 117 TSMITYSSTLLPKL--DNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRK--P-----LSCFSAALGCLLTFSTGLFYL 187 (362)
Q Consensus 117 ~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr--~-----~~~~~~~~~~~~~~~~~~~~~ 187 (362)
..+..|.....+.. |++ ....+..+...+.-++.+++..++..+.+++ . -+-++..+++.+.+++.....
T Consensus 305 ssl~~~a~~~v~~~~~g~~-vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~ 383 (498)
T COG3104 305 SSLNLYADRNVNRQIFGFE-VPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGI 383 (498)
T ss_pred chHHHHHHHhhccccccee-cCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444443332 444 5566777888888888888888887775443 1 133455555555555444312
Q ss_pred HhcC-CCCcchHHHHHHHHHHHHh-hcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHH------HHHhh
Q psy15226 188 YQGE-LPNFQYIPYITTLLYAASY-YGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHIL------ITKSL 259 (362)
Q Consensus 188 ~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~------~~~~~ 259 (362)
.... ....+...++......... ...+|+..+++....|++..+..++........+..++..+.+. ..+..
T Consensus 384 ~~~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~ 463 (498)
T COG3104 384 WFGGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAF 463 (498)
T ss_pred hhcCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhh
Confidence 2211 2222333333333333344 67778888899999999999999998887777777777766652 22333
Q ss_pred chhHHHHHHHHhhHhHHhhhhee
Q psy15226 260 GQHVIFFIYSSVHFCSVVFNYFY 282 (362)
Q Consensus 260 g~~~~~~~~~~~~~i~~~~~~~~ 282 (362)
.....|+.++...++..+.....
T Consensus 464 ~~~~~F~~~g~v~i~~~~~~~~~ 486 (498)
T COG3104 464 IEGRVFGTIGVVAIVIGILLLLL 486 (498)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHh
Confidence 34456777776666655554333
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0029 Score=57.83 Aligned_cols=122 Identities=7% Similarity=-0.116 Sum_probs=80.9
Q ss_pred CchhHHHHHHHHHHHHH-HHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCC-------------------
Q psy15226 135 FGPDQCILVFMIIMFLS-NFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPN------------------- 194 (362)
Q Consensus 135 ~~~~~~~~~~~~~~~~~-~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------- 194 (362)
+...+.-+...+...+. .++.+++++|++|++++......+.....++++..+...+.-+
T Consensus 43 e~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~ 122 (472)
T TIGR00769 43 EIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGF 122 (472)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHH
Confidence 34556656555555555 8889999999999999888777777777666654332211100
Q ss_pred ----cchHHHHHHHHHHHHh-hcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy15226 195 ----FQYIPYITTLLYAASY-YGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILIT 256 (362)
Q Consensus 195 ----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~ 256 (362)
..|....+....-... ...+.+.|.+++|.+..++-.+-.++...++++|..+++.+...+.
T Consensus 123 i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 123 IAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0111111111111111 2333377899999999999999999999999999999999887776
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >MTH00161 ND3 NADH dehydrogenase subunit 3; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=1.3e-05 Score=57.69 Aligned_cols=49 Identities=63% Similarity=1.171 Sum_probs=44.7
Q ss_pred ccccCCCCCCCCCCCCCCCccchHHHHHHHHHHHhhhheeeeEeccccc
Q psy15226 306 RREKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSPLI 354 (362)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (362)
+++|.+++||+.++.++.|.+++.|||+.++.|++|++|+.++.|++..
T Consensus 30 ~~~k~spyECGf~~~~~~~~~fsi~ffliallFliFDvEii~l~P~~~~ 78 (113)
T MTH00161 30 DREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFI 78 (113)
T ss_pred CcccCccccCCcCCCCCcccCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567789999999999999999999999999999999999999999754
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.004 Score=47.72 Aligned_cols=108 Identities=8% Similarity=-0.048 Sum_probs=78.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHh-hccc
Q psy15226 136 GPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASY-YGIG 214 (362)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 214 (362)
.......+......+++++.+.+.+++|.|+.++++.+...+....... ...+..+..-.+.+.+. ..+.
T Consensus 38 ~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~---------~~~~~l~~~s~l~G~~~a~lW~ 108 (156)
T PF05978_consen 38 LGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFY---------PNSYTLYPASALLGFGAALLWT 108 (156)
T ss_pred ccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh---------hhHHHHHHHHHHHhhhhHHhhH
Confidence 3445667777888889999999999999999999998888766555322 13444444455555555 5555
Q ss_pred ccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHH
Q psy15226 215 CLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHI 253 (362)
Q Consensus 215 ~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~ 253 (362)
+.. .++.+...++.|++-.++...+...+.++|..+.-
T Consensus 109 aqg-~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~ 146 (156)
T PF05978_consen 109 AQG-TYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLF 146 (156)
T ss_pred hhh-HHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 555 78888888889999888887777777777766553
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00026 Score=62.70 Aligned_cols=134 Identities=10% Similarity=0.055 Sum_probs=69.0
Q ss_pred HHHHHHHhhhhHHHHHHhHHHHhhhc---CCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHh--HHHHH
Q psy15226 105 MAASLFQRLGGITSMITYSSTLLPKL---DNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAAL--GCLLT 179 (362)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~--~~~~~ 179 (362)
..++.....++++-...|...+.++. +-+..-.+.+-....+.+.++++..|++..++.+..-+..+... .+...
T Consensus 252 WSlWWa~atcgy~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L 331 (412)
T PF01770_consen 252 WSLWWAFATCGYYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLL 331 (412)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHH
Confidence 33444444455666666666666655 11112234566667777888888888886555554433333322 22223
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHHHh-hcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHH
Q psy15226 180 FSTGLFYLYQGELPNFQYIPYITTLLYAASY-YGIGCLPNILVSELFPINVRCQASSCASVALAFGSFI 247 (362)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~ 247 (362)
+++.. .++-+...+...++...+ .... +...-++.....+.-|...|+.++...+-..+
T Consensus 332 ~lm~~--------t~~Iwv~Y~~yIif~~~y~fliT-iA~~qIA~~l~~e~yaLVFGiNtf~Al~LQti 391 (412)
T PF01770_consen 332 FLMSF--------TGNIWVCYAGYIIFRSLYMFLIT-IASFQIAKNLSEERYALVFGINTFVALVLQTI 391 (412)
T ss_pred HHHHH--------hhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhccccceeeeeeeHHHHHHHHHHh
Confidence 33222 334455555555565555 3322 22233444444555566666666555444433
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PRK07928 NADH dehydrogenase subunit A; Validated | Back alignment and domain information |
|---|
Probab=97.65 E-value=1.7e-05 Score=57.35 Aligned_cols=50 Identities=30% Similarity=0.818 Sum_probs=42.8
Q ss_pred cccccCCCCCCCCCCCCCC--CccchHHHHHHHHHHHhhhheeeeEeccccc
Q psy15226 305 LRREKTSPFECGFDPISKP--RISYSLHFFSIALIFLIFDIEITLIFPSPLI 354 (362)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (362)
++++|.+++||+.++.++. +.+++.|||+.++.|++|++|++++.||...
T Consensus 33 ~~~~K~s~yECGf~p~~~~~~~~~Fsi~ffliallFliFDvEi~~l~Pwa~~ 84 (119)
T PRK07928 33 YNRAKLEAYECGIEPTPQPAGGGRFPVKYYLTAMLFIVFDIEIVFLYPWAVS 84 (119)
T ss_pred CCcccCCccCCCCCCCCCccccceeeeehHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778899999997664 6679999999999999999999999998653
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0035 Score=53.79 Aligned_cols=148 Identities=21% Similarity=0.162 Sum_probs=90.2
Q ss_pred HHHHhHHHHhhhcCCCC--CchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCc
Q psy15226 118 SMITYSSTLLPKLDNAY--FGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNF 195 (362)
Q Consensus 118 ~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (362)
......+.+..+.+.+. ....+......+...++.++.|.++||.|||+.+..+......+.+...+ .....
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~ 93 (338)
T COG0477 20 LLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLAL------APNVG 93 (338)
T ss_pred hHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHh------Cccch
Confidence 33445555555555443 24677888888888888899999999999997777776654444333333 11111
Q ss_pred chHHHHHHHHHHHHhhcccccchhhcccCCCc-chhhhhhHHHHH-HHHHHHHHHHHHHHHHHHh--hchhHHHHHHHHh
Q psy15226 196 QYIPYITTLLYAASYYGIGCLPNILVSELFPI-NVRCQASSCASV-ALAFGSFITTKFHILITKS--LGQHVIFFIYSSV 271 (362)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-~~r~~~~~~~~~-~~~ig~~~~~~~~~~~~~~--~g~~~~~~~~~~~ 271 (362)
...........+.+.....+...++..|..|. +.|+...+.... ...++..+++.+.+.+... .+|+..+......
T Consensus 94 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (338)
T COG0477 94 LALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALL 173 (338)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 22222222222222233445556889999887 678888888777 5667777777666555543 4677644444333
|
|
| >PRK08489 NADH dehydrogenase subunit A; Validated | Back alignment and domain information |
|---|
Probab=97.52 E-value=3.2e-05 Score=56.51 Aligned_cols=48 Identities=38% Similarity=0.849 Sum_probs=41.3
Q ss_pred cccccCCCCCCCCCCCCCCCccchHHHHHHHHHHHhhhheeeeEecccc
Q psy15226 305 LRREKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSPL 353 (362)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (362)
++.+|.+++||+.++.++. .+++.|||..+++|++|++|++++.||..
T Consensus 43 ~~~~K~s~yECGf~p~~~~-~~Fsi~FyliallFliFDlEiv~l~P~a~ 90 (129)
T PRK08489 43 TEKLKLAIYECGPEPVKQP-NRISSHFYIMALLFILFDVEIVFMFPWAV 90 (129)
T ss_pred CCcccCCccccCCCCCCCC-ceeeeehHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567778899999997654 56999999999999999999999999864
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=97.50 E-value=2e-05 Score=73.43 Aligned_cols=169 Identities=11% Similarity=-0.016 Sum_probs=0.6
Q ss_pred HHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhc------
Q psy15226 117 TSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQG------ 190 (362)
Q Consensus 117 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~------ 190 (362)
.......+++-+.++++..+.+++.+..-++..+..++..++.+|-.|-+.+-.+.++++++.+++++-.....
T Consensus 20 g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~ 99 (539)
T PF03137_consen 20 GYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEE 99 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCcccc
Confidence 33444556677778999899999999999999999999999999988878888899999999888875222110
Q ss_pred -C------------C-------------------CCcch--HHHHHH--HHHHHHhhcccccchhhcccCCCcchhhhhh
Q psy15226 191 -E------------L-------------------PNFQY--IPYITT--LLYAASYYGIGCLPNILVSELFPINVRCQAS 234 (362)
Q Consensus 191 -~------------~-------------------~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~ 234 (362)
. . ..... ..+..+ ++.+.+.....++..+|+-|..+++.-+...
T Consensus 100 ~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYi 179 (539)
T PF03137_consen 100 ASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYI 179 (539)
T ss_dssp ----------------------------------------------------SSS-------------------------
T ss_pred ccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccch
Confidence 0 0 00001 111111 1111121334466678999999999989999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh---------------------hc-hhHHHHHHHHhhHhHHhhhheeeccC
Q psy15226 235 SCASVALAFGSFITTKFHILITKS---------------------LG-QHVIFFIYSSVHFCSVVFNYFYLMET 286 (362)
Q Consensus 235 ~~~~~~~~ig~~~~~~~~~~~~~~---------------------~g-~~~~~~~~~~~~~i~~~~~~~~~~e~ 286 (362)
|+......+|.++|-.+++...+. .| |+..|++.+.+.++..+.. +..|+.
T Consensus 180 Gi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl-~~FPk~ 252 (539)
T PF03137_consen 180 GILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPL-FFFPKK 252 (539)
T ss_dssp --------------------------------------------------------------------------
T ss_pred hhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHH-HcCCcc
Confidence 999998888888887777665431 12 5556767777666665544 455554
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF00507 Oxidored_q4: NADH-ubiquinone/plastoquinone oxidoreductase, chain 3; InterPro: IPR000440 NADH:ubiquinone oxidoreductase (complex I) (1 | Back alignment and domain information |
|---|
Probab=97.44 E-value=2.6e-05 Score=55.30 Aligned_cols=48 Identities=54% Similarity=1.072 Sum_probs=27.4
Q ss_pred ccCCCCCCCCCCCCCCCccchHHHHHHHHHHHhhhheeeeEecccccc
Q psy15226 308 EKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSPLIK 355 (362)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (362)
+|.+++||+.++.+..+.+++.+|+..+++|+++++|++++.|++...
T Consensus 22 ~k~s~yECG~~p~~~~~~~fs~~ff~i~ilFliFDvEivll~p~~~~~ 69 (102)
T PF00507_consen 22 EKLSPYECGFDPFGSSRSPFSIQFFLIAILFLIFDVEIVLLFPWAFSF 69 (102)
T ss_dssp -------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred hhcChhhcCCCCCCcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 778899999999999999999999999999999999999999998754
|
6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This family contains chain 3 of the NADH-ubiquinone / plastoquinone oxidoreductase.; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0055114 oxidation-reduction process; PDB: 3RKO_A. |
| >MTH00060 ND3 NADH dehydrogenase subunit 3; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=5.9e-05 Score=53.81 Aligned_cols=48 Identities=33% Similarity=0.670 Sum_probs=43.4
Q ss_pred ccccCCCCCCCCCCCCCCCccchHHHHHHHHHHHhhhheeeeEecccc
Q psy15226 306 RREKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSPL 353 (362)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (362)
+++|.++.||+.++.++.+.+++.||+..++.|++|++|++++.|+..
T Consensus 34 ~~~K~spyECGf~~~~~~~~~Fsi~FfliallFliFDvEiv~l~P~~~ 81 (116)
T MTH00060 34 GFSWVSSFECGFFSSGLSENCFSFTYFFLLVFFVIFDLEISLLLNMPF 81 (116)
T ss_pred CcccCCccCCCCCCCCCccCccceehHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778999999999999999999999999999999999999999653
|
|
| >KOG3626|consensus | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0046 Score=58.75 Aligned_cols=190 Identities=12% Similarity=-0.017 Sum_probs=124.7
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHH
Q psy15226 100 AFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLT 179 (362)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~ 179 (362)
.++.+..+..+.+......+..-..++-+.++++..+.+++...+-++..+...+..+...|.-|-+.+-+|+++++++.
T Consensus 97 ~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgs 176 (735)
T KOG3626|consen 97 MFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGS 176 (735)
T ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHH
Confidence 34444444444443322333344445555668887888888888889999999999999999989899999999999999
Q ss_pred HHHHHHHHHhc---------------C----------------------C---CCcc--hHHHHHHHHHHHH--hhcccc
Q psy15226 180 FSTGLFYLYQG---------------E----------------------L---PNFQ--YIPYITTLLYAAS--YYGIGC 215 (362)
Q Consensus 180 ~~~~~~~~~~~---------------~----------------------~---~~~~--~~~~~~~~~~~~~--~~~~~~ 215 (362)
+++++--.... . . .... ...++++..+..+ .....+
T Consensus 177 ll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~t 256 (735)
T KOG3626|consen 177 LLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFT 256 (735)
T ss_pred HHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCcc
Confidence 88876322210 0 0 0111 1112222222222 233445
Q ss_pred cchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHh------------------hc-hhHHHHHHHHhhHhHH
Q psy15226 216 LPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKS------------------LG-QHVIFFIYSSVHFCSV 276 (362)
Q Consensus 216 ~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~------------------~g-~~~~~~~~~~~~~i~~ 276 (362)
+..+|+-|...++.-....|+.+++..+|.++|-.+++...+. .| |+..|++.+.+.++..
T Consensus 257 lGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a 336 (735)
T KOG3626|consen 257 LGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSA 336 (735)
T ss_pred CCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHH
Confidence 6668899998888888899999999999999998888776542 12 5567778888877776
Q ss_pred hhhheeeccCCCCC
Q psy15226 277 VFNYFYLMETKQKT 290 (362)
Q Consensus 277 ~~~~~~~~e~~~~~ 290 (362)
+.. ++.|++.++.
T Consensus 337 ~p~-f~fPk~lp~~ 349 (735)
T KOG3626|consen 337 VPL-FFFPKELPKS 349 (735)
T ss_pred HHH-HhCcccCccc
Confidence 555 5667665544
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.001 Score=44.72 Aligned_cols=69 Identities=10% Similarity=-0.069 Sum_probs=62.3
Q ss_pred HHHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHH
Q psy15226 116 ITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGL 184 (362)
Q Consensus 116 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~ 184 (362)
-+.++..+|.+.++.+++..+.+++.+...+++.+|++...++.++.++++.+..+.+...+..+.+++
T Consensus 8 RFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~ 76 (85)
T PF06779_consen 8 RFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMAL 76 (85)
T ss_pred HHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 466777889999999999999999999999999999999999999988888888899888888888776
|
Note that many members are hypothetical proteins. |
| >KOG4686|consensus | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0001 Score=61.14 Aligned_cols=127 Identities=10% Similarity=0.002 Sum_probs=88.0
Q ss_pred hcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhh-cCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH
Q psy15226 129 KLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDI-LGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYA 207 (362)
Q Consensus 129 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (362)
+.+.+..+..+..++++.-+++-++++|++.|| +|-|...++-+....++-++++.-. ..+..+.+....++++
T Consensus 73 d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Gg-----i~~aFw~M~~GRF~FG 147 (459)
T KOG4686|consen 73 DSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGG-----ISHAFWTMLAGRFLFG 147 (459)
T ss_pred ccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhch-----HHHHHHHHHhhheeec
Confidence 334454456677788888889999999999997 4666655555555555555554311 1235566667777777
Q ss_pred HHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy15226 208 ASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLG 260 (362)
Q Consensus 208 ~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g 260 (362)
.+.-........++.-.+..+.-+.++|+.....++|..+--.+.+++.+..+
T Consensus 148 IGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~ 200 (459)
T KOG4686|consen 148 IGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMG 200 (459)
T ss_pred cCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHH
Confidence 76622333445788888888889999999999999999887777777766543
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.047 Score=48.77 Aligned_cols=148 Identities=12% Similarity=0.057 Sum_probs=85.6
Q ss_pred cCCCCCchhHHHH-HHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHH
Q psy15226 130 LDNAYFGPDQCIL-VFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAA 208 (362)
Q Consensus 130 ~g~~~~~~~~~~~-~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (362)
.|++.++...-.. ...=......++...+.|..+.|++++++.+...+...++.+ ..+...+.+.-+.++.
T Consensus 35 kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~--------~~sv~~mq~~q~~yg~ 106 (412)
T PF01770_consen 35 KNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLF--------GTSVLAMQLMQFFYGL 106 (412)
T ss_pred cCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH--------HCcHHHHHHHHHHHHH
Confidence 4777555442222 222345556677788999999999999988887777776655 2233333333444444
Q ss_pred HhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHH--hhchhHHHHHHHHhhHhHHhhhheeeccC
Q psy15226 209 SYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITK--SLGQHVIFFIYSSVHFCSVVFNYFYLMET 286 (362)
Q Consensus 209 ~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~i~~~~~~~~~~e~ 286 (362)
.. ..-...++++--..|+++--++.+......-+|.+++..++..+.. ...+.....+......++.++. +++|..
T Consensus 107 ~~-a~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~-~fLP~~ 184 (412)
T PF01770_consen 107 AT-AAEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIA-LFLPMP 184 (412)
T ss_pred HH-HHHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHcCCC
Confidence 43 2223334666566677776677777777777777777766655544 2334444344333334443443 556654
Q ss_pred C
Q psy15226 287 K 287 (362)
Q Consensus 287 ~ 287 (362)
+
T Consensus 185 ~ 185 (412)
T PF01770_consen 185 K 185 (412)
T ss_pred C
Confidence 3
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.033 Score=49.61 Aligned_cols=38 Identities=18% Similarity=0.169 Sum_probs=30.1
Q ss_pred hhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy15226 218 NILVSELFPINVRCQASSCASVALAFGSFITTKFHILI 255 (362)
Q Consensus 218 ~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~ 255 (362)
+..+.|-.|+++|..++|.....-.+|..++..++-.+
T Consensus 357 F~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l 394 (402)
T PF02487_consen 357 FYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL 394 (402)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 45667778999999999999988888888877766443
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0034 Score=54.65 Aligned_cols=86 Identities=15% Similarity=0.131 Sum_probs=59.2
Q ss_pred HHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHh----------------hchhH
Q psy15226 200 YITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKS----------------LGQHV 263 (362)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~----------------~g~~~ 263 (362)
++..++.+.+.....+....+++++.|++.+++.+++...++.+|..++|.+.+.+... ..|+.
T Consensus 14 l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 93 (310)
T TIGR01272 14 LGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAEAAKVHT 93 (310)
T ss_pred HHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHHHHHHHH
Confidence 33344444444333455558999999999999999999999999999999999987732 36788
Q ss_pred HHHHHHHhhHhHHhh-hheeecc
Q psy15226 264 IFFIYSSVHFCSVVF-NYFYLME 285 (362)
Q Consensus 264 ~~~~~~~~~~i~~~~-~~~~~~e 285 (362)
++++.+.+..+..++ .+.-.||
T Consensus 94 ~yl~ia~~~~~~~i~~~~~~~p~ 116 (310)
T TIGR01272 94 PYLLLAGALAVLAIIFAFLPLPE 116 (310)
T ss_pred HHHHHHHHHHHHHHHHHHccCCC
Confidence 888666554444333 2233454
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.024 Score=46.85 Aligned_cols=23 Identities=17% Similarity=0.272 Sum_probs=17.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcc
Q psy15226 15 SYNSLNIALSILPVIFFILFSFV 37 (362)
Q Consensus 15 ~Wr~~f~~~~~~~~~~~~~~~~l 37 (362)
.|++++.+.+++.++-+++..++
T Consensus 39 ~W~~I~si~~lL~~IpLIly~if 61 (267)
T PF07672_consen 39 NWQWILSIFILLIFIPLILYIIF 61 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 69999999998887766655443
|
|
| >KOG3098|consensus | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.05 Score=49.40 Aligned_cols=114 Identities=14% Similarity=0.083 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh---cCCchhhhhhhHhHHHHHHHHHHHHHHhcC---CC------C-cchHHHHHHHH
Q psy15226 139 QCILVFMIIMFLSNFLQAPLMDI---LGRKPLSCFSAALGCLLTFSTGLFYLYQGE---LP------N-FQYIPYITTLL 205 (362)
Q Consensus 139 ~~~~~~~~~~~~~~~~~g~l~dr---~grr~~~~~~~~~~~~~~~~~~~~~~~~~~---~~------~-~~~~~~~~~~~ 205 (362)
......+++..++....+.+.+| +||++.+.++..+..+..++.-+....+.+ ++ . ......+....
T Consensus 283 i~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l 362 (461)
T KOG3098|consen 283 IYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFL 362 (461)
T ss_pred HHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHH
Confidence 34455666777777777777765 688888888888777776665432111110 00 0 11122222222
Q ss_pred HHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHH
Q psy15226 206 YAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHI 253 (362)
Q Consensus 206 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~ 253 (362)
.+.+-..+....+..+.+.+ ++.|..+.++.-+-..++..++-...+
T Consensus 363 ~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~ 409 (461)
T KOG3098|consen 363 LGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSP 409 (461)
T ss_pred HhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhh
Confidence 22222566666667888888 567888888887777777766655554
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.048 Score=49.40 Aligned_cols=166 Identities=11% Similarity=0.019 Sum_probs=87.3
Q ss_pred HHHhHHHHhhhc-CCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHH-hcCCCC--
Q psy15226 119 MITYSSTLLPKL-DNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLY-QGELPN-- 194 (362)
Q Consensus 119 ~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-- 194 (362)
..+..+.++.+. .-+..........-.+..++.++..|...||..|.+......+..-++.......... ......
T Consensus 21 w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~ 100 (432)
T PF06963_consen 21 WEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSS 100 (432)
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCcccc
Confidence 334445555554 2232334455556667778888888999999999988777665544443333222111 101111
Q ss_pred -cchHHH---HHHHHHHHHh-hcccccchhhcccC----C--CcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhchhH
Q psy15226 195 -FQYIPY---ITTLLYAASY-YGIGCLPNILVSEL----F--PINVRCQASSCASVALAFGSFITTKFHILITKSLGQHV 263 (362)
Q Consensus 195 -~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~e~----~--p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~ 263 (362)
+.+... ......+... .......-+.--|+ . ++.......+...-+=.+...++|.+.|.+.+..+...
T Consensus 101 ~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~ 180 (432)
T PF06963_consen 101 QSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFASPVI 180 (432)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHH
Confidence 111111 1111222111 11111111111222 2 22333344444444445678999999999998888888
Q ss_pred HHHHHHHhhHhHHhhhheeec
Q psy15226 264 IFFIYSSVHFCSVVFNYFYLM 284 (362)
Q Consensus 264 ~~~~~~~~~~i~~~~~~~~~~ 284 (362)
...+.++..+++..+=++++.
T Consensus 181 ~~~~i~~~N~~S~~vEy~~l~ 201 (432)
T PF06963_consen 181 AAIFIAGWNLASVFVEYFLLA 201 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888888888887766555543
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG2325|consensus | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0037 Score=56.76 Aligned_cols=57 Identities=12% Similarity=0.141 Sum_probs=46.4
Q ss_pred hhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhHhH
Q psy15226 219 ILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCS 275 (362)
Q Consensus 219 ~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~ 275 (362)
+.-+|...++.+++..++.......+..++|.+........|.++...+.....++.
T Consensus 411 tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~ 467 (488)
T KOG2325|consen 411 TLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVV 467 (488)
T ss_pred HHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHH
Confidence 778999999999999999999999999999999888888888886555544444433
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0097 Score=53.29 Aligned_cols=116 Identities=13% Similarity=-0.027 Sum_probs=74.8
Q ss_pred hhhhhhhHhHHHHHHHHHHHHHHhcC-CCCcchHHHHHHHHHHHHhhcccccchhhcccCCCcc---hhhhhhHHHHHHH
Q psy15226 166 PLSCFSAALGCLLTFSTGLFYLYQGE-LPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPIN---VRCQASSCASVAL 241 (362)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~---~r~~~~~~~~~~~ 241 (362)
+.++++.++..++.+++.+....... .........+.+.+...+.++.-+...++.+|.++++ .|.....+.+...
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 34566777777777775442211100 0011133344444444444555555558899998765 4666777888999
Q ss_pred HHHHHHHHHHHHHHHHhhchhHHHHHHHHhhHhHHhhhhe
Q psy15226 242 AFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFNYF 281 (362)
Q Consensus 242 ~ig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 281 (362)
++|+.++..+.+++.++.||...|.+.++..+++.+..+.
T Consensus 82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~ 121 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLS 121 (372)
T ss_dssp HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999998888888665543
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.04 Score=48.84 Aligned_cols=143 Identities=10% Similarity=0.047 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHh-HHHHHHHHHHHHHHhcCCC-CcchHHHHHHHHHHHHhhccccc
Q psy15226 139 QCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAAL-GCLLTFSTGLFYLYQGELP-NFQYIPYITTLLYAASYYGIGCL 216 (362)
Q Consensus 139 ~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 216 (362)
...++.++...+-+++-|.++|+.|+|+.....+.. ..++.+.+.+ ..+ +..+..+.+..+...++......
T Consensus 62 y~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~------i~~~s~~~~~l~~~il~~i~~~~s~Vf 135 (438)
T COG2270 62 YASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWF------IPPGSYLLLLLLFLILASIGFEFSNVF 135 (438)
T ss_pred HHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHH------hCCCchHHHHHHHHHHHHHhcchhhee
Confidence 456677778888899999999999987765554443 3333433333 122 23334344444444444333344
Q ss_pred chhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHH---HH---------------HhhchhHHHHHHHHhhHhHHhh
Q psy15226 217 PNILVSELFPINVRCQASSCASVALAFGSFITTKFHIL---IT---------------KSLGQHVIFFIYSSVHFCSVVF 278 (362)
Q Consensus 217 ~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~---~~---------------~~~g~~~~~~~~~~~~~i~~~~ 278 (362)
..+++.+..+++.-++..++....+++|+.+.-...-. .. +....|..+.+.++..++..+-
T Consensus 136 yds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iP 215 (438)
T COG2270 136 YDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALP 215 (438)
T ss_pred hhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhH
Confidence 55889999988777777777777777776655443211 11 1233456677777776666665
Q ss_pred hheeeccCC
Q psy15226 279 NYFYLMETK 287 (362)
Q Consensus 279 ~~~~~~e~~ 287 (362)
.++..++..
T Consensus 216 m~~~v~~~~ 224 (438)
T COG2270 216 MILNVHDAE 224 (438)
T ss_pred HHhcccccc
Confidence 555555543
|
|
| >KOG4332|consensus | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.011 Score=48.99 Aligned_cols=163 Identities=13% Similarity=-0.006 Sum_probs=85.5
Q ss_pred HHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcch
Q psy15226 118 SMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQY 197 (362)
Q Consensus 118 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (362)
....|.-.+.+..|+...+.+..........++...+.|-++||-|||+..+.-++...++++-- ......
T Consensus 55 LQgPYvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCiTK---------hSpqYk 125 (454)
T KOG4332|consen 55 LQGPYVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCITK---------HSPQYK 125 (454)
T ss_pred hcCceeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHHhh---------cCCceE
Confidence 33445445556678887788777766666677777888899999999997766665555554321 111222
Q ss_pred HHHHHHHHHHHHh-hcccccchhhcccCCCcchhhhhhHH-------H-HHHHHHHHHHHHHHHHHHHHhh--chhHHHH
Q psy15226 198 IPYITTLLYAASY-YGIGCLPNILVSELFPINVRCQASSC-------A-SVALAFGSFITTKFHILITKSL--GQHVIFF 266 (362)
Q Consensus 198 ~~~~~~~~~~~~~-~~~~~~~~~~~~e~~p~~~r~~~~~~-------~-~~~~~ig~~~~~~~~~~~~~~~--g~~~~~~ 266 (362)
..++...+.+... .-+...-.-++.|-. ++|+.-.-+ . .+.+.+.++++...+..+.+.+ |.-.+|-
T Consensus 126 VLmVGR~LGGiaTsLLFSaFEsWliaEHn--ekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFd 203 (454)
T KOG4332|consen 126 VLMVGRVLGGIATSLLFSAFESWLIAEHN--EKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFD 203 (454)
T ss_pred EEeehhhhhhHHHHHHHHHHHHHHHHHhh--hccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchH
Confidence 2233333333332 222222212455543 223321111 1 2334455556655555566654 4445665
Q ss_pred HHHHhhHhHHhhhheeeccCCCCCH
Q psy15226 267 IYSSVHFCSVVFNYFYLMETKQKTL 291 (362)
Q Consensus 267 ~~~~~~~i~~~~~~~~~~e~~~~~~ 291 (362)
..+.+..++..+..--..|..+++.
T Consensus 204 AAacfLaigmAvil~~W~ENygdps 228 (454)
T KOG4332|consen 204 AAACFLAIGMAVILSSWSENYGDPS 228 (454)
T ss_pred HHHHHHHHHHHHHHhhhhhccCChh
Confidence 5555555554444344456555543
|
|
| >KOG1237|consensus | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.17 Score=47.76 Aligned_cols=152 Identities=17% Similarity=0.112 Sum_probs=97.9
Q ss_pred hhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhc-CCchhhhhhhHhHHHHHHHHHHHHHHhcCC-------------C
Q psy15226 128 PKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDIL-GRKPLSCFSAALGCLLTFSTGLFYLYQGEL-------------P 193 (362)
Q Consensus 128 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~ 193 (362)
...+.+...+.-.............+.+++++|-+ ||-+.+.++.++..++..++.+....+... .
T Consensus 66 ~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~ 145 (571)
T KOG1237|consen 66 LELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCE 145 (571)
T ss_pred HHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCccc
Confidence 34466655566667777777888889999999975 898988888888887766665543333100 0
Q ss_pred Ccc--hHHHHHHHHHHH--HhhcccccchhhcccCCC---c-chhh--hhhHHHHHHHHHHHHHHHHHHHHHHHhhchhH
Q psy15226 194 NFQ--YIPYITTLLYAA--SYYGIGCLPNILVSELFP---I-NVRC--QASSCASVALAFGSFITTKFHILITKSLGQHV 263 (362)
Q Consensus 194 ~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~~e~~p---~-~~r~--~~~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~ 263 (362)
... ...+....+... +.++.-+...++-+|.++ + +.+. ..+.+..+..+.|..++..+..+..++.||..
T Consensus 146 ~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~l 225 (571)
T KOG1237|consen 146 SPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKL 225 (571)
T ss_pred CcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhccccee
Confidence 011 111222222222 224444555578888887 2 2222 55666777888888888888888888899998
Q ss_pred HHHHHHHhhHhHHhhh
Q psy15226 264 IFFIYSSVHFCSVVFN 279 (362)
Q Consensus 264 ~~~~~~~~~~i~~~~~ 279 (362)
.|.+..+..+++.++.
T Consensus 226 gf~i~~~~~~lai~iF 241 (571)
T KOG1237|consen 226 GFGIPTVLNALAILIF 241 (571)
T ss_pred eccHHHHHHHHHHHHH
Confidence 8888777766665443
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.13 Score=45.87 Aligned_cols=133 Identities=11% Similarity=0.135 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhcccccchh
Q psy15226 140 CILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNI 219 (362)
Q Consensus 140 ~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (362)
+...-.+-..+..+.+.++.+|+.-+.-......++.++++..++ ..+.+..++...+.+.. .+.+-+...
T Consensus 64 Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~--------~~~v~~~l~Gv~las~s-sg~GE~tfL 134 (402)
T PF02487_consen 64 VLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAF--------SPSVWVRLLGVVLASLS-SGLGEVTFL 134 (402)
T ss_pred HHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheee--------ccchhHHHHHHHHHhhh-hhhhHHHHH
Confidence 445555677788888899999887554455556666667766655 22333444444444333 333333322
Q ss_pred hcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHH-hhchhHHHHHHHHhhHhHHhhhheeecc
Q psy15226 220 LVSELFPINVRCQASSCASVALAFGSFITTKFHILITK-SLGQHVIFFIYSSVHFCSVVFNYFYLME 285 (362)
Q Consensus 220 ~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~i~~~~~~~~~~e 285 (362)
-.+..+++. +.+-...+.+.++.+|+...-.+.+ ....+..+.+...++++..+..++.+|.
T Consensus 135 ~lt~~y~~~----~l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~~f~~L~~ 197 (402)
T PF02487_consen 135 SLTHFYGKS----SLSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLLSYFFLLPS 197 (402)
T ss_pred HHHHhcCcc----ccccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 334456542 3344444555566666665544443 2334556666666665554444445553
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.19 Score=45.98 Aligned_cols=58 Identities=19% Similarity=0.081 Sum_probs=37.8
Q ss_pred cchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHH
Q psy15226 195 FQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFH 252 (362)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~ 252 (362)
+.+..++...+++...+........+..+..++++|..+..+...+-.+|-.+|..+.
T Consensus 371 ~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~ 428 (437)
T TIGR00939 371 GDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLS 428 (437)
T ss_pred ccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444433344455556788888889998888888888777777776654
|
|
| >KOG0637|consensus | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.0042 Score=55.25 Aligned_cols=153 Identities=16% Similarity=0.073 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhh----cCCchhhhh-hhH
Q psy15226 99 RAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDI----LGRKPLSCF-SAA 173 (362)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~grr~~~~~-~~~ 173 (362)
+.++....+.+..++. +..-..|.|.++++.|.+....+..-....+.+.+.+++.|..+|| +|||+..+. +..
T Consensus 32 ~~li~v~~ia~Gvqf~-wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~ 110 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFG-WALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL 110 (498)
T ss_pred HHHHHHHHHHHHHHHH-HHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhH
Confidence 4444445555555543 4666788999999999987666766677778889999999999996 688776655 444
Q ss_pred hHHHHHHHHHHHHHH---hcCCCCc-chHHHHHHHHHH-----HHh-hcccccchhhcccCCCcchhhh-hhHHHHHHHH
Q psy15226 174 LGCLLTFSTGLFYLY---QGELPNF-QYIPYITTLLYA-----ASY-YGIGCLPNILVSELFPINVRCQ-ASSCASVALA 242 (362)
Q Consensus 174 ~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~e~~p~~~r~~-~~~~~~~~~~ 242 (362)
..+++.+++...--+ ..+.... .....+...+.+ ... ...+|. -++..|+..++.+.+ +.+....+..
T Consensus 111 ~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~-ra~L~Dl~~~d~~~~~Ans~f~~f~a 189 (498)
T KOG0637|consen 111 LIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPC-RALLADLARGDAKKTRANSVFSFFMA 189 (498)
T ss_pred HHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhH-HHHHHHhccChhhhhccchhHHHHHH
Confidence 555555544321000 0011111 111111112211 122 233444 388999987777777 8999888888
Q ss_pred HHHHHHHHHHH
Q psy15226 243 FGSFITTKFHI 253 (362)
Q Consensus 243 ig~~~~~~~~~ 253 (362)
+|+.++-.+.+
T Consensus 190 vGnvLGY~~g~ 200 (498)
T KOG0637|consen 190 VGNVLGYALGS 200 (498)
T ss_pred hcceeeeeccc
Confidence 99888866664
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.3 Score=45.19 Aligned_cols=111 Identities=9% Similarity=0.019 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCC--CCc-------------c--------hHHHHHH
Q psy15226 147 IMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGEL--PNF-------------Q--------YIPYITT 203 (362)
Q Consensus 147 ~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-------------~--------~~~~~~~ 203 (362)
+.++...+..+++++++|.+++-.....+.....++++..+...+. .+. . |...++.
T Consensus 71 ~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfY 150 (491)
T PF03219_consen 71 VAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFY 150 (491)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHH
Confidence 4456677789999999999988877777777777766654422100 000 0 0000111
Q ss_pred HHHHHHh-hcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy15226 204 LLYAASY-YGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITK 257 (362)
Q Consensus 204 ~~~~~~~-~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~ 257 (362)
...-.-. ...+.+.|.+++|.++.++-.+..++...++++|.++++.+...+.+
T Consensus 151 v~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 151 VMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111 12233568999999999999999999999999999999998877766
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.28 Score=46.00 Aligned_cols=46 Identities=11% Similarity=0.055 Sum_probs=30.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHH-hhchhHHHHHHHHhhHhHH
Q psy15226 231 CQASSCASVALAFGSFITTKFHILITK-SLGQHVIFFIYSSVHFCSV 276 (362)
Q Consensus 231 ~~~~~~~~~~~~ig~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~i~~ 276 (362)
+...|-.+....+|+++|+.+.+.+.- ..|.....++.+.+.+++.
T Consensus 144 g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a 190 (521)
T PRK03612 144 GHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAA 190 (521)
T ss_pred hhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 456677788888888888888877654 5675545555555444433
|
|
| >KOG3810|consensus | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.1 Score=45.12 Aligned_cols=153 Identities=11% Similarity=0.092 Sum_probs=80.8
Q ss_pred hhhHHHHHHhHHHHhhhcCCCCCchh----HHHHHHHHHHHHHHHHHHHHhhhcCCchhhhh--hhHhHHHHHHHHHHHH
Q psy15226 113 LGGITSMITYSSTLLPKLDNAYFGPD----QCILVFMIIMFLSNFLQAPLMDILGRKPLSCF--SAALGCLLTFSTGLFY 186 (362)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~g~~~~~~~----~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~--~~~~~~~~~~~~~~~~ 186 (362)
.+|++-...|...+-++.. + .... ..=.+..+.++++.++.|.+.-.+.|..-+++ +.+..+...+.+.
T Consensus 247 scg~~QV~nY~Q~LW~~~~-~-~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~--- 321 (433)
T KOG3810|consen 247 SCGYYQVTNYTQILWKEVA-P-NPANVYNGAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMA--- 321 (433)
T ss_pred hchhHHHHHHHHHHHHhhC-C-CchhhhcCHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhh---
Confidence 3344555555555545443 2 2222 33345566778888888888777766643333 3233332332222
Q ss_pred HHhcCCCCcchHHHHHHHHHHHHh-hcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc-----
Q psy15226 187 LYQGELPNFQYIPYITTLLYAASY-YGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLG----- 260 (362)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g----- 260 (362)
..++-+...+...++...+ ... ++...-+++....+.-|...|+..++.-+-..+...+. .|..|
T Consensus 322 -----~t~~Iw~~Ya~yvlfr~~y~l~i-tiA~~~iA~nL~~e~~gLvFGiNTFvAl~lQsilT~iV---vd~~g~~L~i 392 (433)
T KOG3810|consen 322 -----QTQHIWVCYAGYVLFRVIYQLTI-TIATFQIARNLSSELFGLVFGINTFVALILQSILTLIV---VDDRGLGLDI 392 (433)
T ss_pred -----cccceehhhhhHHHHHhhHhhhh-hHHHHHHHHhhhhhhheeeeehHHHHHHHHHHhheEEE---EcccccCCCc
Confidence 2345555566566665555 333 33334555556667778888888777666555554433 12111
Q ss_pred ------hhHHHHHHHHhhHhHHhhh
Q psy15226 261 ------QHVIFFIYSSVHFCSVVFN 279 (362)
Q Consensus 261 ------~~~~~~~~~~~~~i~~~~~ 279 (362)
+..-|.+.+++.++...+.
T Consensus 393 r~Q~~~Y~~Yf~v~~~i~~~~~~~~ 417 (433)
T KOG3810|consen 393 RTQFVVYSSYFIVLGVIFLIGFGIE 417 (433)
T ss_pred ceeEEEEeehHHHHHHHHHHHHHHH
Confidence 1123666676666664443
|
|
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.0039 Score=54.19 Aligned_cols=112 Identities=21% Similarity=0.093 Sum_probs=2.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc-CCchhhhhhhHhHHHHHHHHHHHHHHhc-----CCCCcchHHHHHHHHHHHHhhcc
Q psy15226 140 CILVFMIIMFLSNFLQAPLMDIL-GRKPLSCFSAALGCLLTFSTGLFYLYQG-----ELPNFQYIPYITTLLYAASYYGI 213 (362)
Q Consensus 140 ~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 213 (362)
....++++-.+|..+.++..-+. .+|.+.. ..+.=.+..-++..+...+. ..-.+.+..++...+++...+..
T Consensus 187 ~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~-~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl 265 (309)
T PF01733_consen 187 LFLLFNLGDFIGRFLASWPRWPGPSPRWLWI-LSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYL 265 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhcchhcceeEecccccccHHH-HHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchh
Confidence 45567788888888777643111 2343332 22222222111111111110 00112233333333333332444
Q ss_pred cccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHH
Q psy15226 214 GCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFH 252 (362)
Q Consensus 214 ~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~ 252 (362)
.++...+..+..++++|..+..+..++-.+|-.+|..+.
T Consensus 266 ~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls 304 (309)
T PF01733_consen 266 STLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLS 304 (309)
T ss_dssp -HHHH----------------------------------
T ss_pred hhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555667788888888888887777776666666665543
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >KOG3762|consensus | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.014 Score=53.27 Aligned_cols=67 Identities=15% Similarity=0.052 Sum_probs=53.6
Q ss_pred HHHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhH-HHHHHHH
Q psy15226 116 ITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALG-CLLTFST 182 (362)
Q Consensus 116 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~-~~~~~~~ 182 (362)
.......++.+.++.|+++.+.+.+...--+..+++.+++|+++||+.+|+.++++..+. ..+.+++
T Consensus 27 ~g~l~pll~vy~kQLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a~fll 94 (618)
T KOG3762|consen 27 FGSLFPLLAVYFKQLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTATFLL 94 (618)
T ss_pred ccccchHHHHHHHHcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhe
Confidence 456677888899999999999999999999999999999999999998776666655444 4444433
|
|
| >KOG3098|consensus | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.56 Score=42.83 Aligned_cols=106 Identities=9% Similarity=-0.060 Sum_probs=81.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHh-hcccc
Q psy15226 137 PDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASY-YGIGC 215 (362)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 215 (362)
-.....+......+++++.+.+.|+.|.|..+.++..........+.. .+.+..+..-.+.+.+. ..+..
T Consensus 52 Gy~~~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~---------~N~y~~yfssallG~Gaallw~G 122 (461)
T KOG3098|consen 52 GYYGQAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF---------PNSYYLYFSSALLGFGAALLWTG 122 (461)
T ss_pred cHHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh---------cchHHHHHHHHHhhhhHHheecc
Confidence 334578888899999999999999999999999998888877766544 23555555566666666 55555
Q ss_pred cchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHH
Q psy15226 216 LPNILVSELFPINVRCQASSCASVALAFGSFITTKFH 252 (362)
Q Consensus 216 ~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~ 252 (362)
-. .+++|..+.+.+.+-.++.-.+...+.++|..+.
T Consensus 123 qG-~ylt~~st~~tie~Nisi~Wai~~~~li~Ggi~l 158 (461)
T KOG3098|consen 123 QG-GYLTSNSTRETIERNISIFWAIGQSSLIIGGIIL 158 (461)
T ss_pred cc-eehhhcCChhhHHHHHHHHHHHHHHHHHhhhHhh
Confidence 55 7999999999999999988887777777775543
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.27 E-value=4.3 Score=37.25 Aligned_cols=123 Identities=8% Similarity=-0.018 Sum_probs=80.7
Q ss_pred CchhHHHHHHHH-HHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhc---------------CCC-Cc--
Q psy15226 135 FGPDQCILVFMI-IMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQG---------------ELP-NF-- 195 (362)
Q Consensus 135 ~~~~~~~~~~~~-~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~-~~-- 195 (362)
+...+.-+..-+ ++++..++.+++.+++.|.+++......+..+.+++++..+... ..+ ..
T Consensus 61 e~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~ 140 (509)
T COG3202 61 ESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKW 140 (509)
T ss_pred hhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCcccee
Confidence 344444444444 56778888899999999999988877777777777776554211 001 00
Q ss_pred ------chHHHHHHHHHHHHh-hcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy15226 196 ------QYIPYITTLLYAASY-YGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITK 257 (362)
Q Consensus 196 ------~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~ 257 (362)
.|.......+.-.-. ...+-+.|..++|.+..++-.+-.++.+.+.+++..++..+..++.+
T Consensus 141 ~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k 209 (509)
T COG3202 141 FILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSK 209 (509)
T ss_pred eeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 011111111111111 23334567889999999999999999999999999999888877765
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=93.93 E-value=4.6 Score=37.58 Aligned_cols=41 Identities=10% Similarity=0.129 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHH
Q psy15226 139 QCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLT 179 (362)
Q Consensus 139 ~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~ 179 (362)
......++..++..++++.+.+|+|-+....+.-+...++.
T Consensus 323 ~~~~~tGivtii~~~l~~~iir~~GW~~~AlitPiv~lit~ 363 (491)
T PF03219_consen 323 KFSSWTGIVTIIMMFLSSNIIRRFGWRTAALITPIVILITG 363 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHH
Confidence 34455666677777888999999998887666544444433
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >KOG1479|consensus | Back alignment and domain information |
|---|
Probab=93.41 E-value=2.2 Score=38.14 Aligned_cols=106 Identities=13% Similarity=-0.043 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhc-CCCCcchHHHHHHHHHHHHhhcccccchhhcc
Q psy15226 144 FMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQG-ELPNFQYIPYITTLLYAASYYGIGCLPNILVS 222 (362)
Q Consensus 144 ~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (362)
+++...+|.+...+.-++ +||.+ .+..++-.+..-.+.++.+.+. ....+.+..+....+++...+....+...+..
T Consensus 292 fN~~d~vG~~~a~~~~~~-~~r~l-~i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGYltsl~m~~aP 369 (406)
T KOG1479|consen 292 FNVFDLIGSILAALLTWP-DPRKL-TIPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGYLTSLIMMYAP 369 (406)
T ss_pred hHHHHHhhhhhhhcccCC-CCcee-hHHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccchHhhheehhcC
Confidence 666777776655555444 23333 2222222222222221211110 00122333333333333332444566667888
Q ss_pred cCCCcchhhhhhHHHHHHHHHHHHHHHHH
Q psy15226 223 ELFPINVRCQASSCASVALAFGSFITTKF 251 (362)
Q Consensus 223 e~~p~~~r~~~~~~~~~~~~ig~~~~~~~ 251 (362)
+..|++++-.+..+...+-..|-+.|..+
T Consensus 370 k~v~~~e~e~aG~~m~~fl~~Gl~~G~~~ 398 (406)
T KOG1479|consen 370 KQVKPSEKEAAGNLMVFFLVGGLALGSLL 398 (406)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 88888887766666665555555555443
|
|
| >KOG1479|consensus | Back alignment and domain information |
|---|
Probab=93.04 E-value=3.5 Score=36.92 Aligned_cols=45 Identities=18% Similarity=0.114 Sum_probs=21.3
Q ss_pred hHHHHHHhHHHHhhhc-CCCCCchhHHHHHHHHHH----HHHHHHHHHHhhh
Q psy15226 115 GITSMITYSSTLLPKL-DNAYFGPDQCILVFMIIM----FLSNFLQAPLMDI 161 (362)
Q Consensus 115 ~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~----~~~~~~~g~l~dr 161 (362)
-++.+.+-.+.+.+.. +.+. ...........+ .+....-.++.-|
T Consensus 33 pWN~fiTa~~y~~~~~~~~~~--~~~F~~~~~~~a~i~~ll~~~~n~~~~~~ 82 (406)
T KOG1479|consen 33 PWNMFITASDYYYYRFPGYHN--SKNFTSSYTLAAQIPLLLFNLLNAFLNTR 82 (406)
T ss_pred chHhhhccHHHHHhhcCCCch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666665 3332 333333333333 3444444445555
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=91.99 E-value=10 Score=35.14 Aligned_cols=38 Identities=8% Similarity=-0.004 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHH
Q psy15226 140 CILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCL 177 (362)
Q Consensus 140 ~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~ 177 (362)
.....++..++..++.+++.+|+|-+....+.-+...+
T Consensus 308 ~~~~~gi~tl~~~l~~~~l~~~~Gw~~~a~i~Pii~li 345 (472)
T TIGR00769 308 FSTWTGVVSVTMMLLSGNVIRKYGWLTAALITPLVMLL 345 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34445555666677779999999998776666555544
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >KOG3574|consensus | Back alignment and domain information |
|---|
Probab=91.55 E-value=2.5 Score=37.52 Aligned_cols=69 Identities=22% Similarity=0.292 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhh-----hcCCchhhhh
Q psy15226 98 RRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMD-----ILGRKPLSCF 170 (362)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-----r~grr~~~~~ 170 (362)
++.+....++...+.. - .+...-.|.+++.-|.|-.+.+....... -.--.+++.++.| |+|||+..+.
T Consensus 30 ~~~illLl~LYllQGi-P-~GL~~~iP~lL~ak~vSyt~~a~fS~ay~--P~sLKllWaPiVDs~y~k~~GrrksWvv 103 (510)
T KOG3574|consen 30 RSSILLLLFLYLLQGI-P-LGLIGAIPLLLQAKGVSYTSQAIFSFAYW--PFSLKLLWAPIVDSVYSKRFGRRKSWVV 103 (510)
T ss_pred hhhHHHHHHHHHHcCC-c-hhHhhhhHHHhcCCCcchhhhhhhhhhhh--HHHHHHHHHhhhHHHHHHhhccccceee
Confidence 3344444444444332 2 33344778888877777444443322211 1223557888888 9999987554
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=89.78 E-value=8 Score=35.52 Aligned_cols=21 Identities=19% Similarity=-0.034 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHhhhcCC
Q psy15226 144 FMIIMFLSNFLQAPLMDILGR 164 (362)
Q Consensus 144 ~~~~~~~~~~~~g~l~dr~gr 164 (362)
..+...+..+....+..|+..
T Consensus 54 ~~v~~l~~~~~~~~~~~~i~~ 74 (437)
T TIGR00939 54 SQLPSLLFNSLNLFLIFRIPV 74 (437)
T ss_pred HHHHHHHHHHHHHHHhhccCc
Confidence 334444444555555556554
|
|
| >KOG3574|consensus | Back alignment and domain information |
|---|
Probab=88.71 E-value=4.9 Score=35.76 Aligned_cols=45 Identities=4% Similarity=0.006 Sum_probs=38.1
Q ss_pred hhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhchhH
Q psy15226 219 ILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHV 263 (362)
Q Consensus 219 ~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~ 263 (362)
+..+.+.++..-|+-+.+.+...++|+-.-..+...+.+..+++.
T Consensus 392 af~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D~ltv~~ 436 (510)
T KOG3574|consen 392 AFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLADGLTVKQ 436 (510)
T ss_pred HHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcccCceee
Confidence 778899999999999999999999998887777777777666653
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=87.87 E-value=8.4 Score=35.64 Aligned_cols=34 Identities=18% Similarity=0.215 Sum_probs=20.9
Q ss_pred hhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHH
Q psy15226 219 ILVSELFPINVRCQASSCASVALAFGSFITTKFH 252 (362)
Q Consensus 219 ~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~ 252 (362)
.++-.+..++.++.|......+.++|-+++-.++
T Consensus 141 GWALT~Ls~~n~~~ASTcqtvG~~~Gyfls~tvF 174 (544)
T PF13000_consen 141 GWALTMLSPENVGYASTCQTVGQTAGYFLSFTVF 174 (544)
T ss_pred hhhhhhcChhhcchHHHHHHhHhhhhHHHHHHHH
Confidence 4455556677777776655556666666655544
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >PRK10697 DNA-binding transcriptional activator PspC; Provisional | Back alignment and domain information |
|---|
Probab=87.75 E-value=1 Score=32.40 Aligned_cols=35 Identities=11% Similarity=0.112 Sum_probs=18.5
Q ss_pred Hhhhhhhh-----HHHHHHHHHH-----HHHHHH-HhhccCCChHH
Q psy15226 9 LIGNHVSY-----NSLNIALSIL-----PVIFFI-LFSFVPETPHF 43 (362)
Q Consensus 9 ~l~~~~~W-----r~~f~~~~~~-----~~~~~~-~~~~lpesp~~ 43 (362)
.++.++|| |.++++..++ +++..+ +++.+|+.|..
T Consensus 24 GiA~y~gi~~~~VRl~~vl~~~~~~~~~~~~~Yi~l~~~lp~~P~~ 69 (118)
T PRK10697 24 GIAHYFDVPVKLVRIIVVLSIFFGLFVFTLVAYIILSFALDPMPDN 69 (118)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHhhchHHHHHHHHHHHhccCCccc
Confidence 34556654 6665554433 334444 44458888853
|
|
| >KOG0637|consensus | Back alignment and domain information |
|---|
Probab=86.39 E-value=2.1 Score=38.79 Aligned_cols=40 Identities=13% Similarity=0.041 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHH
Q psy15226 139 QCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLL 178 (362)
Q Consensus 139 ~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~ 178 (362)
+-..+..+...+.+...-++.+|+|-|+.++.+.....++
T Consensus 336 ~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~ 375 (498)
T KOG0637|consen 336 LGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLA 375 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHH
Confidence 4556677778888899999999999666555554433333
|
|
| >KOG2881|consensus | Back alignment and domain information |
|---|
Probab=84.38 E-value=21 Score=29.73 Aligned_cols=36 Identities=8% Similarity=0.020 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHH
Q psy15226 146 IIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFS 181 (362)
Q Consensus 146 ~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~ 181 (362)
++..+..+.+-.++.|+.-|++.+.+..++.+..+.
T Consensus 251 lCT~lAVigGk~lAskIS~rtVt~~ggi~Fi~Fgl~ 286 (294)
T KOG2881|consen 251 LCTGLAVIGGKYLASKISVRTVTLIGGILFIIFGLV 286 (294)
T ss_pred HHHHHHHhhhHHHhhhheeEEEEEecchhHHHHHHH
Confidence 333444445557889999999888887776665443
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=83.09 E-value=8.8 Score=33.82 Aligned_cols=61 Identities=16% Similarity=0.128 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhc
Q psy15226 100 AFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDIL 162 (362)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~ 162 (362)
+++.....+.......+.....|.|.+..+ + .....+.+.+.+.+..++|+.+..++..+-
T Consensus 245 ril~LG~~qslFE~smy~FVflWtPaL~~~-~-~~~P~GlIFssFM~a~MlGS~lf~~l~s~~ 305 (354)
T PF05631_consen 245 RILLLGLIQSLFEGSMYLFVFLWTPALDPD-D-EELPLGLIFSSFMVAMMLGSSLFSRLLSKS 305 (354)
T ss_pred hhHHHHHHHHHHHHHHHHheeeeeceecCC-C-CCCCchHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 344444455555555556666777876622 2 224567888889999999999887665543
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=82.79 E-value=16 Score=26.50 Aligned_cols=42 Identities=19% Similarity=0.052 Sum_probs=29.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHH
Q psy15226 137 PDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLL 178 (362)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~ 178 (362)
.+.......++..++..+.+.+.|..|.+..+........+.
T Consensus 89 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (141)
T TIGR00880 89 LGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAA 130 (141)
T ss_pred HHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHH
Confidence 345566677888889999999999888776655544443333
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=82.31 E-value=42 Score=31.12 Aligned_cols=41 Identities=7% Similarity=0.011 Sum_probs=26.1
Q ss_pred HHHHHHH-HHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHH
Q psy15226 141 ILVFMII-MFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFS 181 (362)
Q Consensus 141 ~~~~~~~-~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~ 181 (362)
....++. .++...+++.+..|.|-....++.-+.+.++.++
T Consensus 327 ~~~tgvv~~v~~~~~~s~~ir~~GW~~~AlitPiv~litg~l 368 (509)
T COG3202 327 QIWTGVVSLVVFLFPGSNLIRRVGWFTGALITPLVMLITGVL 368 (509)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3344444 5566678888999988877666655555555433
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=81.11 E-value=11 Score=34.96 Aligned_cols=44 Identities=5% Similarity=0.026 Sum_probs=33.1
Q ss_pred hhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhchh
Q psy15226 219 ILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQH 262 (362)
Q Consensus 219 ~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g~~ 262 (362)
++-+.+.+|..-|+.+.+.|...++|+-.-..+.-++.|.+.++
T Consensus 428 AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~fT~~ 471 (544)
T PF13000_consen 428 AFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDYFTVA 471 (544)
T ss_pred HHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhhcccc
Confidence 67778888999999999999999988876666555555554443
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 362 | ||||
| 4gby_A | 491 | The Structure Of The Mfs (Major Facilitator Superfa | 2e-08 | ||
| 3rko_A | 147 | Crystal Structure Of The Membrane Domain Of Respira | 3e-04 | ||
| 4he8_A | 119 | Crystal Structure Of The Membrane Domain Of Respira | 6e-04 |
| >pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491 | Back alignment and structure |
|
| >pdb|3RKO|A Chain A, Crystal Structure Of The Membrane Domain Of Respiratory Complex I From E. Coli At 3.0 Angstrom Resolution Length = 147 | Back alignment and structure |
|
| >pdb|4HE8|A Chain A, Crystal Structure Of The Membrane Domain Of Respiratory Complex I From Thermus Thermophilus Length = 119 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 362 | |||
| 3rko_A | 147 | NADH-quinone oxidoreductase subunit A; complex I, | 6e-13 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-08 |
| >3rko_A NADH-quinone oxidoreductase subunit A; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli} Length = 147 | Back alignment and structure |
|---|
Score = 64.7 bits (158), Expect = 6e-13
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 307 REKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFP 350
R K PFE G D + R+ S F+ +A+ F+IFD+E +F
Sbjct: 44 RSKNVPFESGIDSVGSARLRLSAKFYLVAMFFVIFDVEALYLFA 87
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.0 bits (134), Expect = 1e-08
Identities = 51/265 (19%), Positives = 83/265 (31%), Gaps = 75/265 (28%)
Query: 5 LAILLIG-------------NHVSYNSLN--IALSI--L-PVIF---FILFSFVPETPHF 43
+ +I HV+ + L I S+ L P + F S P
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP---- 383
Query: 44 HAAKNNLKKTEKSLK--WYRGNKKDVMEEMNSIMDKT--QEDLKSKT-----GYLELLTN 94
+ L W+ K DVM +N + + ++ K T YLEL
Sbjct: 384 -----SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVK 438
Query: 95 KSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYF-----------GPDQCILV 143
N A + S+ I + P LD YF + + +
Sbjct: 439 LENEYA----LHRSIVDHY-NIPKTFDSDDLIPPYLDQ-YFYSHIGHHLKNIEHPERMTL 492
Query: 144 FMIIMFLS-NFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYI---- 198
F ++ FL FL+ + R + ++A+ L T FY YI
Sbjct: 493 FRMV-FLDFRFLEQKI-----RHDSTAWNASGSILNTLQQLKFYK--------PYICDND 538
Query: 199 PYITTLLYAASYYGIGCLPNILVSE 223
P L+ A + N++ S+
Sbjct: 539 PKYERLVNAILDFLPKIEENLICSK 563
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 362 | |||
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.98 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.84 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.74 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.73 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.71 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.65 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.63 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.62 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.59 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.55 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.53 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.39 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.28 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.05 | |
| 3rko_A | 147 | NADH-quinone oxidoreductase subunit A; complex I, | 98.13 |
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=9.3e-31 Score=241.26 Aligned_cols=280 Identities=21% Similarity=0.315 Sum_probs=211.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhccCCChHHHHhcCCHHHHHHHHHhHcCCcccHHHHHHHHHHHHhhccccccchhhhcc
Q psy15226 14 VSYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGYLELLT 93 (362)
Q Consensus 14 ~~Wr~~f~~~~~~~~~~~~~~~~lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (362)
.+||+.+.+..++.++..+..+++||||||+..+++.|++++.+++.+.++. .+++..+.++...++++ .......++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~ 274 (491)
T 4gc0_A 197 DGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTL-ATQAVQEIKHSLDHGRK-TGGRLLMFG 274 (491)
T ss_dssp THHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-HTTHHHHSC
T ss_pred hhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCch-hHHHHHHHHHHHHhhhh-hhhHHHHhc
Confidence 3699999999999999999999999999999999999999999998876554 22222222221111111 111122222
Q ss_pred CcchhHHHHHHHHHHHHHhhhhHHHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhH
Q psy15226 94 NKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAA 173 (362)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~ 173 (362)
.++.........+.++.+.+....|.|.+.+..+.+...........++...++.++++++.||+|||+.++.+..
T Consensus 275 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~ 350 (491)
T 4gc0_A 275 ----VGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGAL 350 (491)
T ss_dssp ----CTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHH
T ss_pred ----ccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchH
Confidence 2345556666666777778888899999988888776666777788889999999999999999999999999888
Q ss_pred hHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHh-hcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHH
Q psy15226 174 LGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASY-YGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFH 252 (362)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~ 252 (362)
...++.+.++.... ........+.....+..++ .+..++.+.+.+|++|++.|+++.|+.+..+++++++++.+.
T Consensus 351 ~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~ 426 (491)
T 4gc0_A 351 GMAIGMFSLGTAFY----TQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTF 426 (491)
T ss_dssp HHHHHHHHHHHHHH----TTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHh----cccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887776654332 1233444455555555566 777888889999999999999999999999999999999887
Q ss_pred HHHHH------hhchhHHHHHHHHhhHhHHhhhheeeccCCCCCHHHHHHHHhccccc
Q psy15226 253 ILITK------SLGQHVIFFIYSSVHFCSVVFNYFYLMETKQKTLAEIQESIMNSHKQ 304 (362)
Q Consensus 253 ~~~~~------~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 304 (362)
+.+.+ ..++...|++++++++++.++.++++||||++++||+|+.++ ++++
T Consensus 427 p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~-~~~~ 483 (491)
T 4gc0_A 427 PMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWE-PETK 483 (491)
T ss_dssp HHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC-----
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhC-CCCc
Confidence 76543 345556788899999999888889999999999999988877 4443
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=4.8e-21 Score=174.27 Aligned_cols=256 Identities=13% Similarity=0.057 Sum_probs=164.3
Q ss_pred chhhHHHHhhhhhh-hHHHHHHHHHHHHHHHHHh-hccCCChHHHHhcCCHHHHHHHHHhHcCCcccHHHHHHHHHHHHh
Q psy15226 2 VGTLAILLIGNHVS-YNSLNIALSILPVIFFILF-SFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQ 79 (362)
Q Consensus 2 ~G~~~~~~l~~~~~-Wr~~f~~~~~~~~~~~~~~-~~lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ 79 (362)
+|++++..+....| ||+.|++.+++.++..++. +++||+|+....+++.++ +++ .+.+.++ ++.+
T Consensus 170 ~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~-~~~~~~~--~~~~ 236 (451)
T 1pw4_A 170 IPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEY----------KND-YPDDYNE--KAEQ 236 (451)
T ss_dssp SHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTT----------CCC--------------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhh----------ccc-ccccchh--hhhc
Confidence 45666666566678 9999999998888766654 458999864321111100 000 0000000 0000
Q ss_pred hccccccchhhhccCcchhHHHHHHHHHHHHHhhhhHHHHHHhHHHHhhh-cCCCCCchhHHHHHHHHHHHHHHHHHHHH
Q psy15226 80 EDLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPK-LDNAYFGPDQCILVFMIIMFLSNFLQAPL 158 (362)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l 158 (362)
+....+...++.++++..+.. .... +....+......+.|.++++ .|.+..+.+.......++.+++.++.|++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l 311 (451)
T 1pw4_A 237 ELTAKQIFMQYVLPNKLLWYI----AIAN-VFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWM 311 (451)
T ss_dssp --CCTHHHHHHTSSCHHHHHH----HHHH-HHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchHHHHHcCHHHHHH----HHHH-HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000111113556665333222 2222 22222346677888999988 58988888899999999999999999999
Q ss_pred hhhc--CCchhhhhhhHhHH-HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhH
Q psy15226 159 MDIL--GRKPLSCFSAALGC-LLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASS 235 (362)
Q Consensus 159 ~dr~--grr~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~ 235 (362)
+||+ |||+.+..+..+.. ++.+.+.. ....+.+.......+.+.+.....+..+.++.|.+|++.|+++.|
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 385 (451)
T 1pw4_A 312 SDKVFRGNRGATGVFFMTLVTIATIVYWM------NPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAG 385 (451)
T ss_dssp HHHTSTTCHHHHHHHHHHHHHHHHHHTTS------CCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHH
T ss_pred HHHHhcCCchhHHHHHHHHHHHHHHHHHH------hcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHH
Confidence 9999 99998877766655 44443322 111233333333444444333334444588999999999999999
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHhhchhHHHHHHHHhhHhHHhhhhe
Q psy15226 236 CASVALAF-GSFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFNYF 281 (362)
Q Consensus 236 ~~~~~~~i-g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 281 (362)
+.+....+ |..++|.+.+.+.+..|+...|++.+++.+++.++.++
T Consensus 386 ~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 386 FTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 99999999999999999998898888887777665543
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.1e-16 Score=144.86 Aligned_cols=215 Identities=12% Similarity=0.033 Sum_probs=145.3
Q ss_pred hHHHHHHHHHHHHHHHHHhhc--cCCChHHHHhcCCHHHHHHHHHhHcCCcccHHHHHHHHHHHHhhccccccchhhhcc
Q psy15226 16 YNSLNIALSILPVIFFILFSF--VPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGYLELLT 93 (362)
Q Consensus 16 Wr~~f~~~~~~~~~~~~~~~~--lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (362)
||+.|++.+++.++..+..++ .||+++. +++ ++ ++++.+.+++++++
T Consensus 208 w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~~--------------~~--------------~~~~~~~~~~~~~~ 256 (438)
T 3o7q_A 208 VQTPYMIIVAIVLLVALLIMLTKFPALQSD---NHS--------------DA--------------KQGSFSASLSRLAR 256 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCCCCTTT---CCC--------------CS--------------STTSHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccccc---ccc--------------cc--------------cccchhhhHHHHHh
Confidence 999998888777766554333 6777531 000 00 01122234667777
Q ss_pred CcchhHHHHHHHHHHHHHhhhhHHHHHHhHHHH-hhhc-CCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhh
Q psy15226 94 NKSNRRAFTLVMAASLFQRLGGITSMITYSSTL-LPKL-DNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFS 171 (362)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~ 171 (362)
+|..+...+..... .........+.|.+ +++. |.+..+.+.......++..++.++.|+++||+|||+.+..+
T Consensus 257 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~ 331 (438)
T 3o7q_A 257 IRHWRWAVLAQFCY-----VGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAY 331 (438)
T ss_dssp CSHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred ChHHHHHHHHHHHH-----HHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 65444332222221 12235666788888 7776 88888888999999999999999999999999999999888
Q ss_pred hHhHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHH
Q psy15226 172 AALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKF 251 (362)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~ 251 (362)
.++.+++.+.+.. . .. ........+.+.+.....+..+++..|.+|++ |+.+.++.. .+.+|+.++|.+
T Consensus 332 ~~~~~~~~~~~~~-------~-~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~ 400 (438)
T 3o7q_A 332 ALIAMALCLISAF-------A-GG-HVGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPV 400 (438)
T ss_dssp HHHHHHHHHHHHH-------C-CH-HHHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-------c-CC-cHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHH
Confidence 8888777766554 1 12 22233333333333444456668889999976 888888777 677999999999
Q ss_pred HHHHHHhhc-hhHHHHHHHHhhHhHHh
Q psy15226 252 HILITKSLG-QHVIFFIYSSVHFCSVV 277 (362)
Q Consensus 252 ~~~~~~~~g-~~~~~~~~~~~~~i~~~ 277 (362)
.|.+.+..| ++..|.+.+++.++..+
T Consensus 401 ~g~l~~~~g~~~~~~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 401 MGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_dssp HHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 999999998 88888776555544433
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=3.1e-18 Score=154.21 Aligned_cols=162 Identities=7% Similarity=-0.006 Sum_probs=110.3
Q ss_pred HHHhHHHHhhhc-C---CCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCC
Q psy15226 119 MITYSSTLLPKL-D---NAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPN 194 (362)
Q Consensus 119 ~~~~~~~~~~~~-g---~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (362)
...+.|.++.+. + .+....+....+..++..++.++.|+++||+|||+++..+..+.+++.+...+ ..
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~--------~~ 310 (417)
T 2cfq_A 239 FDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSF--------AT 310 (417)
T ss_dssp HHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT--------CC
T ss_pred HHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH--------hc
Confidence 334456555442 2 11223345666677788899999999999999999888777777666544432 12
Q ss_pred cchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHH-HHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhH
Q psy15226 195 FQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCA-SVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHF 273 (362)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~-~~~~~ig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 273 (362)
+....+....+.+.+.....+..+.+++|.+|++.|+++.++. +...++|++++|.+.|.+.++.|+...|.+.+++.+
T Consensus 311 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l 390 (417)
T 2cfq_A 311 SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVAL 390 (417)
T ss_dssp SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHH
Confidence 2222222222222222222233357899999999999999995 788889999999999999988888888888888888
Q ss_pred hHHhhhheeeccCCC
Q psy15226 274 CSVVFNYFYLMETKQ 288 (362)
Q Consensus 274 i~~~~~~~~~~e~~~ 288 (362)
++.++.++..||+++
T Consensus 391 ~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 391 GFTLISVFTLSGPGP 405 (417)
T ss_dssp HHHHHHTTSSCCSCT
T ss_pred HHHHHHHhhhcCCCc
Confidence 777666566666543
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=2e-17 Score=150.32 Aligned_cols=169 Identities=11% Similarity=-0.015 Sum_probs=134.9
Q ss_pred hHHHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCC
Q psy15226 115 GITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPN 194 (362)
Q Consensus 115 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (362)
.......+.|.+.++. .+..+.++..+...++..++.+++|+++||+|||+++..+.++.+++.+.+++.... ..
T Consensus 43 ~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~----~~ 117 (451)
T 1pw4_A 43 VRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWA----TS 117 (451)
T ss_dssp HHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHH----HS
T ss_pred HHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhc----cc
Confidence 3445667788888888 998999999999999999999999999999999999999999988888776541100 12
Q ss_pred cchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc-hhHHHHHHHHhhH
Q psy15226 195 FQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLG-QHVIFFIYSSVHF 273 (362)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~ 273 (362)
+.+..++...+.+.+.....+...++++|.+|+++|+++.++.+....+|..++|.+.+.+.+..| |++.|++.+++.+
T Consensus 118 ~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~ 197 (451)
T 1pw4_A 118 SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAI 197 (451)
T ss_dssp SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 334444445555554433445555899999999999999999999999999999999999888898 9999999888887
Q ss_pred hHHhhhheeeccCCC
Q psy15226 274 CSVVFNYFYLMETKQ 288 (362)
Q Consensus 274 i~~~~~~~~~~e~~~ 288 (362)
+..++.++..||+++
T Consensus 198 ~~~~~~~~~~~~~~~ 212 (451)
T 1pw4_A 198 LVALFAFAMMRDTPQ 212 (451)
T ss_dssp HHHHHHHHHCCCSST
T ss_pred HHHHHHHhhccCCHh
Confidence 776666666777543
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.5e-15 Score=138.09 Aligned_cols=168 Identities=12% Similarity=-0.003 Sum_probs=109.7
Q ss_pred HHhHHHHhhhc-CCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhh-----hhhHhHHHHHHHHHHHHHHhc-CC
Q psy15226 120 ITYSSTLLPKL-DNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSC-----FSAALGCLLTFSTGLFYLYQG-EL 192 (362)
Q Consensus 120 ~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~-----~~~~~~~~~~~~~~~~~~~~~-~~ 192 (362)
..+.|.+.++. +.+..+.+.......++..++.++.++++||+|||+... .+..+.+++.+.+........ ..
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (491)
T 4aps_A 303 SVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSG 382 (491)
T ss_dssp GTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCT
T ss_pred cHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34455555553 555566778888888999999999999999999987655 555555555554433221110 01
Q ss_pred CCcchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhh
Q psy15226 193 PNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVH 272 (362)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 272 (362)
..+.........+.+.+.....+..+.++.|.+|++.|+++.|+.+....+|..+++.+.+.+.+ .++...+.+.++++
T Consensus 383 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~ 461 (491)
T 4aps_A 383 KVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGS 461 (491)
T ss_dssp TCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHH
Confidence 12333333334444444344455566899999999999999999999999999999999887754 46666788877777
Q ss_pred HhHHhhhheeeccCCC
Q psy15226 273 FCSVVFNYFYLMETKQ 288 (362)
Q Consensus 273 ~i~~~~~~~~~~e~~~ 288 (362)
+++.++.++..++.++
T Consensus 462 ~~~~~~~~~~~~~~~~ 477 (491)
T 4aps_A 462 VVLGIVLVFLSKRIQG 477 (491)
T ss_dssp HHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7776666565555443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=7.4e-15 Score=132.86 Aligned_cols=159 Identities=13% Similarity=-0.004 Sum_probs=125.4
Q ss_pred HHHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCc
Q psy15226 116 ITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNF 195 (362)
Q Consensus 116 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (362)
........|.+.++.|.+..+.++..+...++..++.++.|+++||+|||+++..+.++.+++.++...... ..+
T Consensus 42 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~-----~~~ 116 (438)
T 3o7q_A 42 NNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE-----IMN 116 (438)
T ss_dssp HHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH-----TTC
T ss_pred HHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccc-----ccc
Confidence 456677788888889999999999999999999999999999999999999999999999988887732111 223
Q ss_pred chHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHH-Hhhc--------------
Q psy15226 196 QYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILIT-KSLG-------------- 260 (362)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~-~~~g-------------- 260 (362)
.+..++...+.+.+.....+...++++|.+|+++|+.+.++.+....+|..+++.+.+.+. +..+
T Consensus 117 ~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~ 196 (438)
T 3o7q_A 117 YTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQ 196 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHH
T ss_pred HHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcch
Confidence 4444454555555543344445589999999999999999999999999999999999988 4444
Q ss_pred -----------hhHHHHHHHHhhHhHHhhh
Q psy15226 261 -----------QHVIFFIYSSVHFCSVVFN 279 (362)
Q Consensus 261 -----------~~~~~~~~~~~~~i~~~~~ 279 (362)
|++.|++.++..++..++.
T Consensus 197 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 226 (438)
T 3o7q_A 197 LSAYKHSLVLSVQTPYMIIVAIVLLVALLI 226 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 8888877776665554443
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.62 E-value=2e-15 Score=133.82 Aligned_cols=165 Identities=12% Similarity=0.101 Sum_probs=132.6
Q ss_pred hHHHHHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCC
Q psy15226 115 GITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPN 194 (362)
Q Consensus 115 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (362)
+........|.+.++.|.+..+.++..+...++..++.++.|+++||+|||+.+..+....+++.+..... +
T Consensus 15 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--------~ 86 (375)
T 2gfp_A 15 AQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT--------S 86 (375)
T ss_dssp HHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH--------H
T ss_pred HHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh--------c
Confidence 34556667788888889998889999999999999999999999999999999999999988888777651 1
Q ss_pred cchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhHh
Q psy15226 195 FQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFC 274 (362)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i 274 (362)
+.+..+....+.+.+.....+...+++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..||+..+++.++..++
T Consensus 87 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 166 (375)
T 2gfp_A 87 SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAG 166 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 23333343444444434344555689999999999999999999999999999999999998888999999988888777
Q ss_pred HHhhhheeeccCC
Q psy15226 275 SVVFNYFYLMETK 287 (362)
Q Consensus 275 ~~~~~~~~~~e~~ 287 (362)
..+...+..||++
T Consensus 167 ~~~~~~~~~~~~~ 179 (375)
T 2gfp_A 167 VTFSMARWMPETR 179 (375)
T ss_dssp HHCCCCCSSCCCS
T ss_pred HHHHHHHHCcccC
Confidence 7665556677654
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.9e-14 Score=132.17 Aligned_cols=159 Identities=17% Similarity=0.146 Sum_probs=125.2
Q ss_pred HHHHHHhHHHHhhh------cCCCCCchhHHHHHHHHHHHHHHHHHHHHhhh-cCCchhhhhhhHhHHHHHHHHHHHHHH
Q psy15226 116 ITSMITYSSTLLPK------LDNAYFGPDQCILVFMIIMFLSNFLQAPLMDI-LGRKPLSCFSAALGCLLTFSTGLFYLY 188 (362)
Q Consensus 116 ~~~~~~~~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~grr~~~~~~~~~~~~~~~~~~~~~~~ 188 (362)
++....+.+.++++ .|.+..+.++..+...++..++++++|+++|| +|||+++..+.++.+++.+.+.+
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~---- 104 (491)
T 4aps_A 29 YYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLAL---- 104 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHS----
T ss_pred HHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHH----
Confidence 45555666666654 68888889999999999999999999999999 89999999999998888877655
Q ss_pred hcCCCCcchHHHHHHHHHHHHhhcccccchhhcccCCCcch--hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHH
Q psy15226 189 QGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINV--RCQASSCASVALAFGSFITTKFHILITKSLGQHVIFF 266 (362)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~--r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~ 266 (362)
.++.+..++...+.+.+.....+...++++|.+|+++ |+.+.++.+....+|..++|.+.+.+.++.||++.|+
T Consensus 105 ----~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~ 180 (491)
T 4aps_A 105 ----PFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFS 180 (491)
T ss_dssp ----CCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred ----hhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 2334444444555555443344555589999999988 7778888889999999999999999999999999999
Q ss_pred HHHHhhHhHHhhhhee
Q psy15226 267 IYSSVHFCSVVFNYFY 282 (362)
Q Consensus 267 ~~~~~~~i~~~~~~~~ 282 (362)
+.++..+++.+...+.
T Consensus 181 ~~~~~~~~~~~~~~~~ 196 (491)
T 4aps_A 181 LAAIGMFIGLLVYYFG 196 (491)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 8877766665554333
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.3e-13 Score=127.76 Aligned_cols=159 Identities=19% Similarity=0.195 Sum_probs=123.4
Q ss_pred HHHHHHhHHHHhh-hcC------CCCCchhHHHHHHHHHHHHHHHHHHHHhhhc-CCchhhhhhhHhHHHHHHHHHHHHH
Q psy15226 116 ITSMITYSSTLLP-KLD------NAYFGPDQCILVFMIIMFLSNFLQAPLMDIL-GRKPLSCFSAALGCLLTFSTGLFYL 187 (362)
Q Consensus 116 ~~~~~~~~~~~~~-~~g------~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~~~~~~~~~~~~~~~~~ 187 (362)
++....+++.++. +.| .+..+.++..+...++..++.+++|+++||+ |||+++..+.++.+++.+.+.+
T Consensus 28 ~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~--- 104 (524)
T 2xut_A 28 FYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAI--- 104 (524)
T ss_dssp HHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH---
Confidence 3555666666654 458 8989999999999999999999999999999 9999999999888888877766
Q ss_pred HhcCCCCcchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHH---HHHHHHHHHHHHHHHHHHHHHhhchhHH
Q psy15226 188 YQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSC---ASVALAFGSFITTKFHILITKSLGQHVI 264 (362)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~---~~~~~~ig~~~~~~~~~~~~~~~g~~~~ 264 (362)
...+.+..++...+.+.+.....+...++++|.+|+++|+++.+. .+....+|..++|.+.+.+.+..||+..
T Consensus 105 ----~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~ 180 (524)
T 2xut_A 105 ----FEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVA 180 (524)
T ss_dssp ----TSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHH
T ss_pred ----hcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHH
Confidence 221333444444444444444445556899999999999876666 8888999999999999999988999999
Q ss_pred HHHHHHhhHhHHhhhhe
Q psy15226 265 FFIYSSVHFCSVVFNYF 281 (362)
Q Consensus 265 ~~~~~~~~~i~~~~~~~ 281 (362)
|++.+++.+++.+...+
T Consensus 181 f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 181 FGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 98888777666555433
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.1e-15 Score=133.66 Aligned_cols=220 Identities=12% Similarity=0.059 Sum_probs=138.9
Q ss_pred chhhHHHHhhhhhhhHHHHHHHHHHHHHHHH-HhhccCCChHHHHhcCCHHHHHHHHHhHcCCcccHHHHHHHHHHHHhh
Q psy15226 2 VGTLAILLIGNHVSYNSLNIALSILPVIFFI-LFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQE 80 (362)
Q Consensus 2 ~G~~~~~~l~~~~~Wr~~f~~~~~~~~~~~~-~~~~lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (362)
+|++++..+.+..|||+.|++.+++.++..+ ..+++||+|+. +++
T Consensus 139 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~------------------------------- 184 (375)
T 2gfp_A 139 LAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPV---DAP------------------------------- 184 (375)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTT---TCC-------------------------------
T ss_pred hhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCC---Ccc-------------------------------
Confidence 3555555566667999999999998888777 44458998742 000
Q ss_pred ccccccchhhhccCcchhHHHHHHHHHHHHHhhhhHHHHHHhHHHHhhh-cCCCCCchhHHHHHHHHHHHHHHHHHHHHh
Q psy15226 81 DLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPK-LDNAYFGPDQCILVFMIIMFLSNFLQAPLM 159 (362)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 159 (362)
+++.+.++++.+++|..+...+.. +...........+.|.+.++ .|.+..+.+.......++..++.++.+++.
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~ 259 (375)
T 2gfp_A 185 RTRLLTSYKTLFGNSGFNCYLLML-----IGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPN 259 (375)
T ss_dssp CCCTTTCSTHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTT
T ss_pred cccHHHHHHHHhcCcchHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 012233456666653332222221 12222345667788888877 588877788888889999999999999999
Q ss_pred hhcCCchhhhhhhHh-HHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHH
Q psy15226 160 DILGRKPLSCFSAAL-GCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCAS 238 (362)
Q Consensus 160 dr~grr~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~ 238 (362)
||++++ +..+... ...+........ . ...+.+.......+.+.+.....+....+..|..| ++|+++.|+.+
T Consensus 260 ~r~~~~--~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~ 332 (375)
T 2gfp_A 260 KRFSTL--MWQSVICCLLAGLLMWIPDW-F---GVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVG 332 (375)
T ss_dssp THHHHH--HHHHHHHHHHTSSSSSHHHH-H---HHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHH
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHhh-h---ccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHH
Confidence 999873 2222222 111111111100 0 00122223333344444444445555688999998 89999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhHHHHH
Q psy15226 239 VALAFGSFITTKFHILITKSLGQHVIFFI 267 (362)
Q Consensus 239 ~~~~ig~~~~~~~~~~~~~~~g~~~~~~~ 267 (362)
....+|..+++.+.+.+.+..++...+.+
T Consensus 333 ~~~~~g~~~~~~~~g~l~~~~~~~~~~~~ 361 (375)
T 2gfp_A 333 GLQNIGSGVLASLSAMLPQTGQGSLGLLM 361 (375)
T ss_dssp HHHHHHHHCCSTTCTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 99999999999999998887777655554
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.3e-12 Score=119.96 Aligned_cols=149 Identities=16% Similarity=0.136 Sum_probs=103.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhc----------CCCCcchHHHHHHHHH
Q psy15226 137 PDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQG----------ELPNFQYIPYITTLLY 206 (362)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~ 206 (362)
.++..+...++..+|++++|+++||+|||+++.++.++..++.++.++...... ....+....++..++.
T Consensus 57 ~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~ 136 (491)
T 4gc0_A 57 LGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIG 136 (491)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHH
Confidence 346677788999999999999999999999999999999999888764100000 0012333444555555
Q ss_pred HHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHh--------hchhHHHHHHHHhhHhHHhh
Q psy15226 207 AASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKS--------LGQHVIFFIYSSVHFCSVVF 278 (362)
Q Consensus 207 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~--------~g~~~~~~~~~~~~~i~~~~ 278 (362)
+.+.++..+...++++|..|++.|+...++.+....+|..+++.+....... .+|+..+.+..+..++. ++
T Consensus 137 G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 215 (491)
T 4gc0_A 137 GIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLF-LM 215 (491)
T ss_dssp HHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhh-hh
Confidence 5554444555568999999999999999999988888888888777655443 23554444444444444 34
Q ss_pred hheeeccC
Q psy15226 279 NYFYLMET 286 (362)
Q Consensus 279 ~~~~~~e~ 286 (362)
..++.||+
T Consensus 216 ~~~~~peS 223 (491)
T 4gc0_A 216 LLYTVPES 223 (491)
T ss_dssp HGGGSCCC
T ss_pred hhhcCCCC
Confidence 44667886
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.28 E-value=4.7e-12 Score=117.26 Aligned_cols=153 Identities=10% Similarity=0.070 Sum_probs=80.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHh----hhcCCc----hhhhhhhHhHHHHHHHHHHHHHHhc-CCCCcchHHHHHHHHHH
Q psy15226 137 PDQCILVFMIIMFLSNFLQAPLM----DILGRK----PLSCFSAALGCLLTFSTGLFYLYQG-ELPNFQYIPYITTLLYA 207 (362)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~g~l~----dr~grr----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 207 (362)
.+.......++..++.++.+++. ||.|+| +.+..+..+.+++.+.+........ ....+.+.......+.+
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 416 (524)
T 2xut_A 337 PAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLT 416 (524)
T ss_dssp HHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHH
Confidence 44444444445555555555543 444332 3444555555555444322000000 00112333333344444
Q ss_pred HHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh--ch---------hHHHHHHHHhhHhHH
Q psy15226 208 ASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSL--GQ---------HVIFFIYSSVHFCSV 276 (362)
Q Consensus 208 ~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~--g~---------~~~~~~~~~~~~i~~ 276 (362)
.+.....+..++++.|..|++.||+++|+.+...++|+.+++.+.+.+.+.. +| ...|++.+++.+++.
T Consensus 417 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (524)
T 2xut_A 417 FGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAA 496 (524)
T ss_dssp HHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHH
Confidence 4433444555688999999999999999999999999999999998876532 12 223666777777776
Q ss_pred hhhheeeccCCCC
Q psy15226 277 VFNYFYLMETKQK 289 (362)
Q Consensus 277 ~~~~~~~~e~~~~ 289 (362)
++.+++.++.+++
T Consensus 497 ~~~~~~~~~~~~~ 509 (524)
T 2xut_A 497 IVFALYARSYQMQ 509 (524)
T ss_dssp HHHC---------
T ss_pred HHHHHHHHHhccc
Confidence 6665555655443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=7.4e-11 Score=105.95 Aligned_cols=156 Identities=10% Similarity=0.022 Sum_probs=94.3
Q ss_pred HHHHHhHHHHhhh-cCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCc
Q psy15226 117 TSMITYSSTLLPK-LDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNF 195 (362)
Q Consensus 117 ~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (362)
.....++|.++++ .|.+..+.+...+...++..++++++|+++||+|||++++.+..+.+++...+....... .....
T Consensus 24 ~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~ 102 (417)
T 2cfq_A 24 GAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGP-LLQYN 102 (417)
T ss_dssp HHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHH-HHHTT
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 4455677887765 599989999999999999999999999999999999998877665544221111000000 00000
Q ss_pred chHHHHHHHHHHHHh-hcccccchhhcccCCCc--chhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhh
Q psy15226 196 QYIPYITTLLYAASY-YGIGCLPNILVSELFPI--NVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVH 272 (362)
Q Consensus 196 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~~p~--~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 272 (362)
. .......+... ....+.. ....+..++ +.|+.+.+.......+|..++|.+.+.+.+ .+|+..|++.++..
T Consensus 103 ~---~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~ 177 (417)
T 2cfq_A 103 I---LVGSIVGGIYLGFCFNAGA-PAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCA 177 (417)
T ss_dssp C---CHHHHGGGSSTTHHHHTTH-HHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTT
T ss_pred H---HHHHHHHHHHHHHHHhhhH-HHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHH
Confidence 0 01111111111 1111111 222233222 355667777777788899999999988876 57888887666554
Q ss_pred HhHHhh
Q psy15226 273 FCSVVF 278 (362)
Q Consensus 273 ~i~~~~ 278 (362)
++..+.
T Consensus 178 ~~~~~~ 183 (417)
T 2cfq_A 178 LILAVL 183 (417)
T ss_dssp TTHHHH
T ss_pred HHHHHH
Confidence 444333
|
| >3rko_A NADH-quinone oxidoreductase subunit A; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.13 E-value=3.9e-07 Score=66.91 Aligned_cols=51 Identities=33% Similarity=0.647 Sum_probs=30.3
Q ss_pred cccccCCCCCCCCCCCCCCCccchHHHHHHHHHHHhhhheeeeEecccccc
Q psy15226 305 LRREKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSPLIK 355 (362)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (362)
.+++|.+++||+.++.++.|.+++.+||+.+++|++|++|++++.||....
T Consensus 42 ~~~eK~spyECGfdp~~~ar~~FsirFfLiAilFlIFDvEi~~L~Pwa~~~ 92 (147)
T 3rko_A 42 RARSKNVPFESGIDSVGSARLRLSAKFYLVAMFFVIFDVEALYLFAWSTSI 92 (147)
T ss_dssp HCC-----------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCcccCCCcccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788899999999999999999999999999999999999999987543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 362 | ||||
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 2e-05 | |
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 6e-04 | |
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 0.004 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 44.3 bits (103), Expect = 2e-05
Identities = 28/200 (14%), Positives = 58/200 (29%), Gaps = 4/200 (2%)
Query: 98 RRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAP 157
+ + A++F L + + L A ++ L
Sbjct: 248 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGW 307
Query: 158 LMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLP 217
+ D + R L+T +T ++++ P + I ++ YG L
Sbjct: 308 MSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNP---TVDMICMIVIGFLIYGPVMLI 364
Query: 218 NILVSELFPINVRCQASS-CASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSV 276
+ EL P A+ GS + G F + +V
Sbjct: 365 GLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAV 424
Query: 277 VFNYFYLMETKQKTLAEIQE 296
+ ++ K++ +QE
Sbjct: 425 ILLIVVMIGEKRRHEQLLQE 444
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 39.3 bits (90), Expect = 6e-04
Identities = 24/217 (11%), Positives = 56/217 (25%), Gaps = 5/217 (2%)
Query: 143 VFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYIT 202
I S F+ + D + L + G + ++
Sbjct: 67 GISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVM----FVL 122
Query: 203 TLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHIL-ITKSLGQ 261
L + + R S + A G I +L +
Sbjct: 123 LFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDW 182
Query: 262 HVIFFIYSSVHFCSVVFNYFYLMETKQKTLAEIQESIMNSHKQLRREKTSPFECGFDPIS 321
H ++ + +F + + +T Q E N + EK
Sbjct: 183 HAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFM 242
Query: 322 KPRISYSLHFFSIALIFLIFDIEITLIFPSPLIKQKI 358
+ + L ++ ++ + ++ SP +++
Sbjct: 243 QYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEV 279
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 36.7 bits (83), Expect = 0.004
Identities = 19/207 (9%), Positives = 46/207 (22%), Gaps = 1/207 (0%)
Query: 90 ELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMF 149
+ K F L + G++ ++F + +
Sbjct: 206 SAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVT 265
Query: 150 LSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAAS 209
L + ++ LL + + I L+
Sbjct: 266 TMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFE 325
Query: 210 YYGIGCLPNILVSELFPINVRCQASS-CASVALAFGSFITTKFHILITKSLGQHVIFFIY 268
+ ++ F + C + + +S+G + +
Sbjct: 326 VPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVL 385
Query: 269 SSVHFCSVVFNYFYLMETKQKTLAEIQ 295
V + + F L +L Q
Sbjct: 386 GLVALGFTLISVFTLSGPGPLSLLRRQ 412
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 362 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.78 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.72 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.7 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.2 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.78 E-value=2.6e-19 Score=160.21 Aligned_cols=260 Identities=13% Similarity=0.060 Sum_probs=153.8
Q ss_pred hhhHHHHhhh-hhhhHHHHHHHHHHHHHHHHHhhc-cCCChHHHHhcCCHHHHHHHHHhHcCCcccHHHHHHHHHHHHhh
Q psy15226 3 GTLAILLIGN-HVSYNSLNIALSILPVIFFILFSF-VPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQE 80 (362)
Q Consensus 3 G~~~~~~l~~-~~~Wr~~f~~~~~~~~~~~~~~~~-lpesp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (362)
|++++..+.. ..+||+.|++.+++.++..++.++ ++|+|+........+ . +++ ..++..+ +..++
T Consensus 168 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---------~~~-~~~~~~~--~~~~~ 234 (447)
T d1pw4a_ 168 PPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEE-Y---------KND-YPDDYNE--KAEQE 234 (447)
T ss_dssp HHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTT-T---------CCC---------------
T ss_pred hhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhh-h---------hhh-cccchhh--ccccc
Confidence 3444433333 348999999999888887765554 777775321111110 0 000 0000000 00001
Q ss_pred ccccccchhhhccCcchhHHHHHHHHHHHHHhhhhHHHHHHhHHHHhhhc-CCCCCchhHHHHHHHHHHHHHHHHHHHHh
Q psy15226 81 DLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKL-DNAYFGPDQCILVFMIIMFLSNFLQAPLM 159 (362)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 159 (362)
....+...++.++++..+.. ....+......+....+.|.++.+. +.+..+.+.......+...++.+++|+++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 309 (447)
T d1pw4a_ 235 LTAKQIFMQYVLPNKLLWYI-----AIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMS 309 (447)
T ss_dssp -CCTHHHHHHTSSCHHHHHH-----HHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHcCchHHHH-----HHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhh
Confidence 11222334455554322221 1112222223456677888888765 88878888899999999999999999999
Q ss_pred hhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHH
Q psy15226 160 DILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASV 239 (362)
Q Consensus 160 dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~ 239 (362)
||++||+..........+......... . ....+.+...+.....+.+..+..+..+.+..|.+|++.|+++.|+.+.
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~ 386 (447)
T d1pw4a_ 310 DKVFRGNRGATGVFFMTLVTIATIVYW--M-NPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGL 386 (447)
T ss_dssp HHTSTTCHHHHHHHHHHHHHHHHHHTT--S-CCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHH
T ss_pred hhccccccccccchhHHHHHHHHHHHH--h-cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 999988755444443333332222211 0 1122333333333443333344445556889999999999999999998
Q ss_pred HHHHH-HHHHHHHHHHHHHhhchhHHHHHHHHhhHhHHhhhheee
Q psy15226 240 ALAFG-SFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFNYFYL 283 (362)
Q Consensus 240 ~~~ig-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 283 (362)
.++++ ..++|.+.|.+.++.|++..+.+.+++.+++.++.+++.
T Consensus 387 ~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 431 (447)
T d1pw4a_ 387 FGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM 431 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 88875 566889999999999999888888777777766654443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.72 E-value=2.5e-17 Score=144.92 Aligned_cols=151 Identities=8% Similarity=-0.002 Sum_probs=116.8
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhccc
Q psy15226 135 FGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIG 214 (362)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (362)
...........++..++..+.+++.||.|+|+.+..+..+.+++.+.+.. .++.+.......+.+.+.....
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~g~~~~~~~ 330 (417)
T d1pv7a_ 259 RVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSF--------ATSALEVVILKTLHMFEVPFLL 330 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHT--------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhcccc--------ccccchhhHHHHHHHHHHHHHH
Confidence 34456667777888999999999999999999999988888887776654 2344444444444444443334
Q ss_pred ccchhhcccCCCcchhhhhhHHH-HHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhhHhHHhhhheeeccCCCCCHHH
Q psy15226 215 CLPNILVSELFPINVRCQASSCA-SVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFNYFYLMETKQKTLAE 293 (362)
Q Consensus 215 ~~~~~~~~e~~p~~~r~~~~~~~-~~~~~ig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~e~~~~~~~~ 293 (362)
+...+++.|.+|++.|+++.++. +....+|..++|.+.|.+.++.|++..+++.+++.++..++..+.++++++.+.++
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r 410 (417)
T d1pv7a_ 331 VGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLLR 410 (417)
T ss_dssp HHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCSSCTTHHH
T ss_pred HHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhH
Confidence 45558999999999999999986 45677999999999999999999999999998888888777777777776666543
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.70 E-value=2e-17 Score=147.77 Aligned_cols=164 Identities=10% Similarity=-0.014 Sum_probs=125.0
Q ss_pred HHHhHHHHhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCCcchH
Q psy15226 119 MITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYI 198 (362)
Q Consensus 119 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (362)
+....|. +++.|.+..+.++..+...++..++++++|+++||+|||+++..+.++.+++.++++...... ++...
T Consensus 44 ~~~~~p~-~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 118 (447)
T d1pw4a_ 44 FALAMPY-LVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWAT----SSIAV 118 (447)
T ss_dssp HHHHHHH-TTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHH----SSSSH
T ss_pred HHHHHHH-HHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhh----hhHHH
Confidence 4444564 456799999999999999999999999999999999999999999999888888776522111 23334
Q ss_pred HHHHHHHHHHHhhcccccchhhcccCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh-chhHHHHHHHHhhHhHHh
Q psy15226 199 PYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSL-GQHVIFFIYSSVHFCSVV 277 (362)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~i~~~ 277 (362)
.++...+.+.+.....+....+++|.+|+++|+++.++.+....+|..+++.+.+...+.. +|++.+++.+.+.++..+
T Consensus 119 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 198 (447)
T d1pw4a_ 119 MFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVAL 198 (447)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHH
Confidence 4444444444443333444589999999999999999999999999999999888776654 788888888877777666
Q ss_pred hhheeeccCC
Q psy15226 278 FNYFYLMETK 287 (362)
Q Consensus 278 ~~~~~~~e~~ 287 (362)
+.+.+.++++
T Consensus 199 ~~~~~~~~~~ 208 (447)
T d1pw4a_ 199 FAFAMMRDTP 208 (447)
T ss_dssp HHHHHCCCSS
T ss_pred HHHHhcccch
Confidence 6656665543
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.20 E-value=3.2e-11 Score=105.11 Aligned_cols=168 Identities=10% Similarity=0.050 Sum_probs=102.3
Q ss_pred HHHHHHhHHHHhhh-cCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhhhHhHHHHHHHHHHHHHHhcCCCC
Q psy15226 116 ITSMITYSSTLLPK-LDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPN 194 (362)
Q Consensus 116 ~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (362)
......++|.++++ .|.+..+.++..+...++..+++++.|+++||+|||+.++.+.....++........... .
T Consensus 23 ~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~----~ 98 (417)
T d1pv7a_ 23 MGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGP----L 98 (417)
T ss_dssp HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHH----H
T ss_pred HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhhh----h
Confidence 34556677776665 599999999999999999999999999999999999999988887777776665411100 0
Q ss_pred cchHHHHHHHHHHHHh-hcccccchhhcccCCC--cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHh
Q psy15226 195 FQYIPYITTLLYAASY-YGIGCLPNILVSELFP--INVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSV 271 (362)
Q Consensus 195 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~~p--~~~r~~~~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~~~~~~ 271 (362)
.....+.......... ....+.. ....+..+ .+.+....+........+..+++.+.+.+.+. +++..+......
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~ 176 (417)
T d1pv7a_ 99 LQYNILVGSIVGGIYLGFCFNAGA-PAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI-NNQFVFWLGSGC 176 (417)
T ss_dssp HHTTCHHHHHHTTTTGGGGGTTHH-HHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcccccccchh-hcccccccchhhhhHHHHHHHhhhhccccccccccccccccc-cccccccchhhH
Confidence 0000111111111111 1111111 12222222 22344566666777788888888888877664 444455555555
Q ss_pred hHhHHhhhheeeccCCCC
Q psy15226 272 HFCSVVFNYFYLMETKQK 289 (362)
Q Consensus 272 ~~i~~~~~~~~~~e~~~~ 289 (362)
..+..++..+..+++...
T Consensus 177 ~~~~~~~~~~~~~~~~~~ 194 (417)
T d1pv7a_ 177 ALILAVLLFFAKTDAPSS 194 (417)
T ss_dssp HHHHHHHHHSSCCCSCSS
T ss_pred HHHHHHHHHHHhcccccc
Confidence 555555555666665433
|