Psyllid ID: psy15227
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 515 | 2.2.26 [Sep-21-2011] | |||||||
| B0WC46 | 517 | Facilitated trehalose tra | N/A | N/A | 0.850 | 0.847 | 0.274 | 2e-49 | |
| A9ZSY3 | 505 | Facilitated trehalose tra | N/A | N/A | 0.805 | 0.821 | 0.268 | 4e-45 | |
| A5LGM7 | 504 | Facilitated trehalose tra | N/A | N/A | 0.858 | 0.876 | 0.274 | 5e-45 | |
| Q7PIR5 | 793 | Facilitated trehalose tra | no | N/A | 0.854 | 0.554 | 0.267 | 7e-44 | |
| A9ZSY2 | 502 | Facilitated trehalose tra | N/A | N/A | 0.844 | 0.866 | 0.277 | 8e-44 | |
| Q17NV8 | 806 | Facilitated trehalose tra | N/A | N/A | 0.850 | 0.543 | 0.265 | 2e-43 | |
| B4HNS0 | 857 | Facilitated trehalose tra | N/A | N/A | 0.866 | 0.520 | 0.253 | 4e-41 | |
| B4QBN3 | 488 | Facilitated trehalose tra | N/A | N/A | 0.838 | 0.885 | 0.261 | 6e-41 | |
| B4HNS1 | 488 | Facilitated trehalose tra | N/A | N/A | 0.836 | 0.883 | 0.263 | 7e-41 | |
| B3NSE1 | 856 | Facilitated trehalose tra | N/A | N/A | 0.850 | 0.511 | 0.265 | 1e-40 |
| >sp|B0WC46|TRET1_CULQU Facilitated trehalose transporter Tret1 OS=Culex quinquefasciatus GN=Tret1 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 197 bits (500), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 126/459 (27%), Positives = 236/459 (51%), Gaps = 21/459 (4%)
Query: 11 QIIATNTASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNA 70
Q++A + S+ ++ G A+ S + + D N + SW+ ++ L
Sbjct: 56 QVLAALSVSLGSMVVGFSSAYTSPALVSMKDRNIT----SFEVTDQSGSWVGGIMPLAGL 111
Query: 71 ISPIFAGILVEKIGRKTTLLLNALLCLPTWFLVV-SNKIECLYIARLFIGISKGVAYTAM 129
+ I G L+E +GRK T+L A + +W L+ + + + + R G S GVA ++
Sbjct: 112 VGGILGGPLIEYLGRKNTILATATPFIISWLLIACATHVAMVLVGRALSGFSVGVASLSL 171
Query: 130 PIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHVSYNSLNIALSILPVIFFILFSF 189
P+++GE + +RG LG +P+ F +G L + GN++ ++ L + LPV F IL
Sbjct: 172 PVYLGETVQPEVRGTLGLLPTAFGNIGILLCFVAGNYMDWSELAFLGATLPVPFLILMFL 231
Query: 190 VPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQ--EDLKSKTGYLELLTN 247
+PETP ++ ++ + K+L+W RG K DV E+ I+ Q E S++ L+LL
Sbjct: 232 IPETPRWYVSRGRDDRARKALQWLRGKKADVDPELKGIIKSHQDAERHASQSAMLDLL-K 290
Query: 248 KSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFL 307
K+N + + + FQ+L GI ++I Y+ + + + C ++ ++ F++ F+
Sbjct: 291 KTNLKPLLISLGLMFFQQLSGINAVIFYTVQIFQD-AGSTIDENLCTIIVGVVNFIATFI 349
Query: 308 QAPLMDILGRKPLSCFSAALGCLLTFST--GLFYLYQ--GELPNFQYIPYITTLLYAASY 363
L+D LGRK L + + + ++T T G FY+ G++ + ++P + +++ +
Sbjct: 350 ATLLIDRLGRKML-LYISDIAMIITLMTLGGFFYVKNNGGDVSHIGWLPLASFVIFVLGF 408
Query: 364 -YGIGCLPNILVSELFPINVRCQASSCASVALAFG---SFITTKFHILITKSLGQHVIFF 419
G G +P +++ E+ P +R S ASVA AF +F+ TK I S+G H F+
Sbjct: 409 SLGFGPIPWLMMGEILPGKIR---GSAASVATAFNWSCTFVVTKTFADIIASIGTHGAFW 465
Query: 420 IYSSVHFCSVVFNYFYLMETKQKTLAEIQESIMNSHKQL 458
++ SV +VF Y+ ET+ K+L +I+ + +++
Sbjct: 466 MFGSVCVVGLVFVIMYVPETQGKSLEDIERKMCGRVRRM 504
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High-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Culex quinquefasciatus (taxid: 7176) |
| >sp|A9ZSY3|TRET1_BOMMO Facilitated trehalose transporter Tret1 OS=Bombyx mori GN=Tret1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 182 bits (463), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 114/425 (26%), Positives = 224/425 (52%), Gaps = 10/425 (2%)
Query: 48 NIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALLCLPTWFLVVSN- 106
NI + + K +++W+ L+ L + I G L+E +GRK T++ A+ W L+ +
Sbjct: 80 NITLDITKEEITWVGGLMPLAALVGGIVGGPLIEYLGRKKTIMGTAVPFTIGWMLIANAI 139
Query: 107 KIECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNH 166
+ ++ R+ G+ G+ A P++IGE + +RGALG +P+ F G L L+G++
Sbjct: 140 NVVMVFAGRVICGVCVGIVSLAFPVYIGETIQPEVRGALGLLPTAFGNTGILLAFLVGSY 199
Query: 167 VSYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNS 226
+ +++L + +PV FF+L PETP ++ +K +++ KSL+W RG ++ +EM
Sbjct: 200 LDWSNLAFFGAAIPVPFFLLMILTPETPRWYVSKARVQEARKSLRWLRGKNVNIEKEMRD 259
Query: 227 I-MDKTQEDLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDN 285
+ + +T+ D + +L + K A + + LFQ+L GI ++I Y++++ ++
Sbjct: 260 LTISQTESDRTGGNAFKQLFS-KRYLPAVMISLGLMLFQQLTGINAVIFYAASIF-QMSG 317
Query: 286 AYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFS--AALGCLLTFSTGLFYLYQG 343
+ + ++ ++ F+S F+ L+D LGRK L S A + LL FYL Q
Sbjct: 318 SSVDENLASIIIGVVNFISTFIATMLIDRLGRKVLLYISSVAMITTLLALGA-YFYLKQN 376
Query: 344 --ELPNFQYIPYITTLLYAASY-YGIGCLPNILVSELFPINVRCQASSCASVALAFGSFI 400
++ + ++P ++Y + G G +P +++ E+ P +R A+S A+ +FI
Sbjct: 377 HIDVTAYGWLPLACLVIYVLGFSIGFGPIPWLMLGEILPSKIRGTAASLATGFNWTCTFI 436
Query: 401 TTKFHILITKSLGQHVIFFIYSSVHFCSVVFNYFYLMETKQKTLAEIQESIMNSHKQLRR 460
TK I ++ H ++++ + ++F F++ ETK K+L EI+ + + +++R
Sbjct: 437 VTKTFQNIIDAIYMHGTLWLFAVICIGGLLFVIFFVPETKGKSLEEIEMKLTSGSRRVRN 496
Query: 461 EKTSP 465
P
Sbjct: 497 ISKQP 501
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High-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Bombyx mori (taxid: 7091) |
| >sp|A5LGM7|TRET1_POLVA Facilitated trehalose transporter Tret1 OS=Polypedilum vanderplanki GN=Tret1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 182 bits (463), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 127/462 (27%), Positives = 235/462 (50%), Gaps = 20/462 (4%)
Query: 8 YVY-QIIATNTASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLD 66
Y+Y QI+A S+ ++ G A+ S + ++ +N + + ++ + + SW+ ++
Sbjct: 39 YIYTQILAAIAVSMGSMVVGFASAYTSPAL--VSMQNTTITSF--KVTEQEASWVGGIMP 94
Query: 67 LGNAISPIFAGILVEKIGRKTTLLLNALLCLPTWFLVV-SNKIECLYIARLFIGISKGVA 125
L I G +E +GRK T+L A+ + W L+ +N I + R G G+A
Sbjct: 95 LAGLAGGIAGGPFIEYLGRKNTILATAVPFIVAWLLIAFANSIWMVLAGRALSGFCVGIA 154
Query: 126 YTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHVSYNSLNIALSILPVIFFI 185
++P+++GE + +RG LG +P+ F +G L + G +V+++ L SILP+ F +
Sbjct: 155 SLSLPVYLGETVQPEVRGTLGLLPTAFGNIGILICFVAGKYVNWSGLAFIGSILPIPFMV 214
Query: 186 LFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDK--TQEDLKSKTGYLE 243
L +PETP + + ++ K+L+W RG K DV E+ I+ E S+ +
Sbjct: 215 LTLLIPETPRWFVTRGREERARKALQWLRGKKADVEPELKGIVKSHCEAERHASQNAIFD 274
Query: 244 LLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFL 303
L+ +SN + + + FQ+L GI ++I Y+ ++ K + + C ++ ++ F
Sbjct: 275 LM-KRSNLKPLLIALGLMFFQQLSGINAVIFYTVSIF-KDAGSTIDENLCTIIVGVVNFG 332
Query: 304 SNFLQAPLMDILGRKPLSCFS--AALGCLLTFSTGLFYLYQG-ELPNFQYIPYITTLLYA 360
+ F L+D LGRK L S A + LLT T +Y G ++ N ++P + ++Y
Sbjct: 333 ATFFATVLIDRLGRKILLYISEVAMVITLLTLGTFFYYKNSGNDVSNIGWLPLASFVIYV 392
Query: 361 ASY-YGIGCLPNILVSELFPINVRCQASSCASVALAFG---SFITTKFHILITKSLGQHV 416
+ G+G +P +++ E+ P +R S ASVA F +FI TK I ++G H
Sbjct: 393 IGFSSGVGPIPWLMLGEILPGKIR---GSAASVATGFNWTCTFIVTKTFADIVAAIGNHG 449
Query: 417 IFFIYSSVHFCSVVFNYFYLMETKQKTLAEIQESIMNSHKQL 458
F+ + + + F F++ ET+ K+L EI+ +M +++
Sbjct: 450 AFWFFGVICLIGLFFVIFFVPETQGKSLEEIERKMMGRVRRM 491
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High-capacity facilitative transporter for trehalose, required to induce anhydrobiosis. Anhydrobiotic larvae can survive almost complete dehydration. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Polypedilum vanderplanki (taxid: 319348) |
| >sp|Q7PIR5|TRET1_ANOGA Facilitated trehalose transporter Tret1 OS=Anopheles gambiae GN=Tret1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 179 bits (453), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 124/464 (26%), Positives = 237/464 (51%), Gaps = 24/464 (5%)
Query: 8 YVY-QIIATNTASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLD 66
Y++ Q++A + S+ ++ G A+ S + + D N + SW+ ++
Sbjct: 328 YIWTQVLAALSVSLGSMVVGFSSAYTSPALVSMKDRNI----TSFEVTDQSGSWVGGIMP 383
Query: 67 LGNAISPIFAGILVEKIGRKTTLLLNALLCLPTWFLV-VSNKIECLYIARLFIGISKGVA 125
L I G ++E +GRK T+L A + +W L+ + + + + R G+ G+A
Sbjct: 384 LAGLAGGILGGPMIEYLGRKNTILATATPFIISWLLIGCATHVAMVLVGRALSGLCVGIA 443
Query: 126 YTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHVSYNSLNIALSILPVIFFI 185
++P+++GE + +RG LG +P+ F +G L + G ++ ++ L + LP+ F +
Sbjct: 444 SLSLPVYLGETVQPEVRGTLGLLPTAFGNIGILLCFVAGKYLDWSGLAFLGAALPIPFLL 503
Query: 186 LFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLK---SKTGYL 242
L +PETP ++ ++N + K+L+W RG K DV E+ I K+ +D + S + L
Sbjct: 504 LMFLIPETPRWYVSRNREDRARKALQWLRGRKADVEPELKGI-SKSHQDAERHASSSAML 562
Query: 243 ELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMF 302
+LL NK+N + + + FQ+L GI ++I Y+ + + C ++ ++ F
Sbjct: 563 DLL-NKANLKPLLISLGLMFFQQLSGINAVIFYTVQIFQSA-GSTIDEKLCTIIVGVVNF 620
Query: 303 LSNFLQAPLMDILGRKPLSCFS--AALGCLLTFSTGLFYLYQG--ELPNFQYIPYITTLL 358
++ F+ L+D LGRK L S A + L+T T FY+ ++ ++P ++
Sbjct: 621 IATFIATVLIDRLGRKILLYISDVAMIITLMTLGT-FFYMKNNGDDVSEIGWLPLAAFVV 679
Query: 359 YAASY-YGIGCLPNILVSELFPINVRCQASSCASVALAFG---SFITTKFHILITKSLGQ 414
+ + G G +P +++ E+ P +R S ASVA AF +F+ TK IT S+G
Sbjct: 680 FVVGFSLGFGPIPWLMMGEILPGKIR---GSAASVATAFNWSCTFVVTKTFADITASIGN 736
Query: 415 HVIFFIYSSVHFCSVVFNYFYLMETKQKTLAEIQESIMNSHKQL 458
H F+++ S+ ++F Y+ ET+ K+L +I+ +M +++
Sbjct: 737 HGAFWMFGSICIVGLLFVIVYVPETQGKSLEDIERKMMGRVRRM 780
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High-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Anopheles gambiae (taxid: 7165) |
| >sp|A9ZSY2|TRET1_APILI Facilitated trehalose transporter Tret1 OS=Apis mellifera ligustica GN=Tret1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 178 bits (452), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 127/458 (27%), Positives = 241/458 (52%), Gaps = 23/458 (5%)
Query: 5 KRS---YVYQIIATNTASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWM 61
KRS Y Q++A S++ L+ G ++ S + + D + + + W+
Sbjct: 33 KRSPMRYTMQLLAALAVSMASLMIGYSSSYTSPALVSMRDNTTATFEVTMDMAM----WI 88
Query: 62 VSLLDLGNAISPIFAGILVEKIGRKTTLLLNALLCLPTW-FLVVSNKIECLYIARLFIGI 120
S++ L I I G +E IGR+ T+L AL L W F+ ++ + + + R G
Sbjct: 89 GSIMPLSALIGGIIGGPCIEYIGRRNTILSTALPFLAGWLFIALATNVAMILVGRSICGF 148
Query: 121 SKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHVSYNSLNIALSILP 180
GVA ++P+++GE + +RG+LG +P+ F G L G ++++ +L + + +P
Sbjct: 149 CVGVASLSLPVYLGESIQPEVRGSLGLLPTVFGNSGILMCFTAGMYLAWRNLALLGACIP 208
Query: 181 VIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSI--MDKTQEDLKSK 238
+IF IL +PETP ++ +K +K+ KSL+W RG D+ EE++SI M E + ++
Sbjct: 209 IIFLILMFLIPETPRWYISKGKIKEARKSLQWLRGKTADISEELDSIQKMHIESERIATE 268
Query: 239 TGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFM 298
+EL K++ + + + FQ+ GI ++I Y+ + K + + ++
Sbjct: 269 GALIELF-RKNHIKPVFISLGLMFFQQFSGINAVIFYTVQIF-KDSGSTVDENLSTIIVG 326
Query: 299 IIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPN---FQYIPYIT 355
++ F+S F+ A ++D LGRK L S+ L C+ F+ G F+ Y EL + F +IP ++
Sbjct: 327 LVNFISTFVAAMIIDRLGRKMLLYISSILMCITLFTFGTFF-YVKELMDVTAFGWIPLMS 385
Query: 356 TLLYAASY-YGIGCLPNILVSELFPINVRCQASSCASVALAFG---SFITTKFHILITKS 411
++Y + +G G +P +++ E+ P+ +R A ASVA AF +F+ TK + +
Sbjct: 386 LIVYVIGFSFGFGPIPWLMMGEILPVKIRGTA---ASVATAFNWSCTFVVTKTYEDLVLH 442
Query: 412 LGQHVIFFIYSSVHFCSVVFNYFYLMETKQKTLAEIQE 449
+G + F+++ ++ + +F + ET+ ++L EI+
Sbjct: 443 IGPYGTFWLFGTLVAVAFIFVIICVPETRGRSLEEIER 480
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Moderate-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Apis mellifera ligustica (taxid: 7469) |
| >sp|Q17NV8|TRET1_AEDAE Facilitated trehalose transporter Tret1 OS=Aedes aegypti GN=Tret1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 177 bits (449), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 122/459 (26%), Positives = 232/459 (50%), Gaps = 21/459 (4%)
Query: 11 QIIATNTASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNA 70
Q++A + S+ ++ G A+ S + + D N + SW+ ++ L
Sbjct: 345 QVLAALSVSLGSMVVGFSSAYTSPALVSMKDRNI----TSFEVTDQSGSWVGGIMPLAGL 400
Query: 71 ISPIFAGILVEKIGRKTTLLLNALLCLPTWFLVV-SNKIECLYIARLFIGISKGVAYTAM 129
I G L+E +GRK T+L A + +W L+ + + + + R G S GVA ++
Sbjct: 401 AGGILGGPLIEYLGRKNTILATATPFIISWLLIACATHVAMVLVGRALSGFSVGVASLSL 460
Query: 130 PIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHVSYNSLNIALSILPVIFFILFSF 189
P+++GE + +RG LG +P+ F +G L + G ++ ++ L + LP+ F +L
Sbjct: 461 PVYLGETVQPEVRGTLGLLPTAFGNIGILLCFVAGKYMDWSGLAFLGAALPIPFLLLMFL 520
Query: 190 VPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQ--EDLKSKTGYLELLTN 247
+PETP ++ ++ + K+L+W RG K DV E+ I+ Q E S++ L+L+
Sbjct: 521 IPETPRWYVSRGRDDRARKALQWLRGKKADVDPELKGIIKSHQDAERHASQSAMLDLM-K 579
Query: 248 KSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFL 307
K+N + + + FQ+L GI ++I Y+ + + + C ++ ++ F++ F+
Sbjct: 580 KANLKPLLISLGLMFFQQLSGINAVIFYTVQIFQDA-GSTIDENLCTIIVGVVNFIATFI 638
Query: 308 QAPLMDILGRKPLSCFSAALGCLLTFST--GLFYLYQG--ELPNFQYIPYITTLLYAASY 363
L+D LGRK L + + + ++T T G FY+ ++ ++P ++Y +
Sbjct: 639 ATMLIDRLGRKML-LYISDVAMIITLMTLGGFFYVKNSGQDVSQVGWLPLAAFVIYVLGF 697
Query: 364 -YGIGCLPNILVSELFPINVRCQASSCASVALAFG---SFITTKFHILITKSLGQHVIFF 419
G G +P +++ E+ P +R S ASVA AF +FI TK I ++G H F+
Sbjct: 698 SLGFGPIPWLMMGEILPGKIR---GSAASVATAFNWSCTFIVTKTFADIINAIGTHGTFW 754
Query: 420 IYSSVHFCSVVFNYFYLMETKQKTLAEIQESIMNSHKQL 458
++ S+ + F FY+ ET+ K+L +I+ +M +++
Sbjct: 755 MFGSICVIGLAFVIFYVPETQGKSLEDIERKMMGRVRRM 793
|
High-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Aedes aegypti (taxid: 7159) |
| >sp|B4HNS0|TRE11_DROSE Facilitated trehalose transporter Tret1-1 OS=Drosophila sechellia GN=Tret1-1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 169 bits (428), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 116/458 (25%), Positives = 226/458 (49%), Gaps = 12/458 (2%)
Query: 8 YVY-QIIATNTASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLD 66
Y++ Q++A + S+ L+ G A+ S + +TD N + + SW+ ++
Sbjct: 392 YIWTQVLAALSVSLGSLVVGFVSAYTSPALVSMTDRNI----TSFEVTQDAGSWVGGIMP 447
Query: 67 LGNAISPIFAGILVEKIGRKTTLLLNAL-LCLPTWFLVVSNKIECLYIARLFIGISKGVA 125
L I G L+E +GR+ T+L A+ + + + + + + R G G+A
Sbjct: 448 LAALAGGITGGPLIEYLGRRNTILATAVPFIVSSLLIACAVNVAMVLCGRFLAGFCVGIA 507
Query: 126 YTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHVSYNSLNIALSILPVIFFI 185
++P+++GE + +RG LG +P+ F +G L + G+ ++++ L + LPV F I
Sbjct: 508 SLSLPVYLGETVQPEVRGTLGLLPTAFGNIGILLCFVAGSFMNWSMLAFLGAALPVPFLI 567
Query: 186 LFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIM-DKTQEDLKSKTGYLEL 244
L +PETP + + ++ K+LKW RG + DV E+ +M + D ++ +
Sbjct: 568 LMFLIPETPRWFVGRGLEERARKALKWLRGKEADVEPELKGLMRSQADADRQASRNTMLE 627
Query: 245 LTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLS 304
L +N + ++ + FQ+ GI ++I Y+ + + G + C ++ I+ FL+
Sbjct: 628 LLKLNNLKPLSISLGLMFFQQFSGINAVIFYTVQIFKDAGSTIDG-NLCTIIVGIVNFLA 686
Query: 305 NFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQ---YIPYITTLLYAA 361
F+ L+D GRK L S L F G F+ + P+ ++P ++Y
Sbjct: 687 TFIGIVLIDRAGRKILLYVSDIAMVLTLFVLGGFFYCKANGPDVSHLGWLPLTCFVIYIL 746
Query: 362 SY-YGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFI 420
+ G G +P +++ E+ P +R A+S A+ F +F+ TK +T ++G H F++
Sbjct: 747 GFSLGFGPIPWLMMGEILPAKIRGSAASVATAFNWFCTFVVTKTFQDLTVAMGAHGAFWL 806
Query: 421 YSSVHFCSVVFNYFYLMETKQKTLAEIQESIMNSHKQL 458
+ ++ F + F Y+ ET+ KTL +I+ +M +++
Sbjct: 807 FGAICFVGLFFVIIYVPETQGKTLEDIERKMMGRVRRM 844
|
Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Drosophila sechellia (taxid: 7238) |
| >sp|B4QBN3|TRE12_DROSI Facilitated trehalose transporter Tret1-2 homolog OS=Drosophila simulans GN=Tret1-2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 169 bits (427), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 119/455 (26%), Positives = 221/455 (48%), Gaps = 23/455 (5%)
Query: 11 QIIATNTASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNA 70
Q++A + S+ L+ G A+ S + +TD + K SW+ ++ L
Sbjct: 28 QVLAALSVSLCSLVVGFVSAYTSPALVSMTDRTIT----SFEVTKDAGSWVGGIMPLAAL 83
Query: 71 ISPIFAGILVEKIGRKTTLLLNALLCLPTWFLVVSNKIEC------LYIARLFIGISKGV 124
I G L+E +GR+TT+L A+ F+V S I C + R G G+
Sbjct: 84 AGGITGGPLIEYLGRRTTILATAVP-----FIVSSLLIACAVNVIMILCGRFLTGFCVGI 138
Query: 125 AYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHVSYNSLNIALSILPVIFF 184
A ++P+++GE + +RG LG +P+ +G L + G+ ++++ L + LPV F
Sbjct: 139 ASLSLPVYLGETLQPEVRGTLGLLPTALGNIGILVCYVAGSFMNWSMLAFLGAALPVPFL 198
Query: 185 ILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQE-DLKSKTGYLE 243
IL +PETP + + ++ K+LKW RG + DV E+ +M E D +++
Sbjct: 199 ILMIIIPETPRWFVNRGQEERARKALKWLRGKEADVEPELKDLMQSQAEADSQARRNTCL 258
Query: 244 LLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFL 303
L + N + ++ + FQ+ GI ++I Y+ + K + + C ++ I+ F
Sbjct: 259 ELFKRINLKPLSISLGLMFFQQFSGINAVIFYTVQIF-KDAGSTIDSNLCTIIVGIVNFF 317
Query: 304 SNFLQAPLMDILGRKPLSCFSAALGCLLTFS--TGLFYL--YQGELPNFQYIPYITTLLY 359
+ F+ L+D LGRK L + + + +LT S G FY + ++ + ++P ++Y
Sbjct: 318 ATFMGILLIDRLGRKIL-LYISDIAMILTLSILGGFFYCKAHGPDVSHLGWLPLTCFVIY 376
Query: 360 AASY-YGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIF 418
+ G G +P +++ E+ P +R A+S + F +F+ TK +T ++G H F
Sbjct: 377 ILGFSLGFGPIPWLMMGEILPAKIRGPAASVVTAFNWFCTFVVTKTFQDLTVAMGAHGAF 436
Query: 419 FIYSSVHFCSVVFNYFYLMETKQKTLAEIQESIMN 453
+++ V + F + ET+ K+L EI+ +M
Sbjct: 437 WLFGVVCIVGLFFVIICVPETRGKSLEEIERKMMG 471
|
Fails to transport trehalose. Drosophila simulans (taxid: 7240) |
| >sp|B4HNS1|TRE12_DROSE Facilitated trehalose transporter Tret1-2 homolog OS=Drosophila sechellia GN=Tret1-2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 168 bits (426), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 120/456 (26%), Positives = 221/456 (48%), Gaps = 25/456 (5%)
Query: 11 QIIATNTASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNA 70
Q++A + S+ L+ G A+ S + +TD + K SW+ ++ L
Sbjct: 28 QVLAALSVSLCSLVVGFVSAYTSPALVSMTDRTIT----SFEVTKDAGSWVGGIMPLAAL 83
Query: 71 ISPIFAGILVEKIGRKTTLLLNALLCLPTWFLVVSNKIEC------LYIARLFIGISKGV 124
I G L+E +GR+ T+L A+ F+V S I C + R G G+
Sbjct: 84 AGGITGGPLIEYLGRRNTILATAVP-----FIVSSLLIACAVNVIMILCGRFLTGFCVGI 138
Query: 125 AYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHVSYNSLNIALSILPVIFF 184
A ++P+++GE + +RG LG +P+ +G L + G+ ++++ L + LPV F
Sbjct: 139 ASLSLPVYLGETLQPEVRGTLGLLPTALGNIGILVCYVAGSFMNWSILAFLGAALPVPFL 198
Query: 185 ILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQE--DLKSKTGYL 242
IL +PETP + + ++ K+LKW RG + DV E+ +M E ++ L
Sbjct: 199 ILMIIIPETPRWFVNRGQEERARKALKWLRGKEADVEPELKDLMQSQAEADSQATRNTCL 258
Query: 243 ELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMF 302
EL + N + ++ + FQ+ GI ++I Y+ + K + + C ++ I+ F
Sbjct: 259 ELF-KRINLKPLSISLGLMFFQQFSGINAVIFYTVQIF-KDAGSTIDSNLCTIIVGIVNF 316
Query: 303 LSNFLQAPLMDILGRKPLSCFSAALGCLLTFS--TGLFYL--YQGELPNFQYIPYITTLL 358
+ F+ L+D LGRK L + + + +LT S G FY + ++ + ++P ++
Sbjct: 317 FATFMGIILIDRLGRKIL-LYVSDIAMILTLSILGGFFYCKAHGPDVSHLGWLPLSCFVI 375
Query: 359 YAASY-YGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVI 417
Y + G G +P +++ E+ P +R A+S + F +F+ TK +T ++G H
Sbjct: 376 YILGFSLGFGPIPWLMMGEILPAKIRGPAASVVTAFNWFCTFVVTKTFQDLTVAMGPHGA 435
Query: 418 FFIYSSVHFCSVVFNYFYLMETKQKTLAEIQESIMN 453
F+++ V + F Y+ ET+ K+L EI+ +M
Sbjct: 436 FWLFGVVCIVGLFFVIIYVPETRGKSLEEIERKMMG 471
|
Fails to transport trehalose. Drosophila sechellia (taxid: 7238) |
| >sp|B3NSE1|TRET1_DROER Facilitated trehalose transporter Tret1 OS=Drosophila erecta GN=Tret1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 168 bits (425), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 122/459 (26%), Positives = 230/459 (50%), Gaps = 21/459 (4%)
Query: 11 QIIATNTASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNA 70
Q++A + S+ L+ G A+ S + +TD N + + SW+ ++ L
Sbjct: 395 QVLAALSVSLGSLVVGFVSAYTSPALVSMTDRNI----TSFEVTQDAGSWVGGIMPLAGL 450
Query: 71 ISPIFAGILVEKIGRKTTLLLNAL-LCLPTWFLVVSNKIECLYIARLFIGISKGVAYTAM 129
I G L+E +GR+ T+L A+ + + + + + + R G G+A ++
Sbjct: 451 AGGIAGGPLIEYLGRRNTILATAVPFIVSSLLIACAVNVAMVLCGRFLAGFCVGIASLSL 510
Query: 130 PIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHVSYNSLNIALSILPVIFFILFSF 189
P+++GE + +RG LG +P+ F +G L + G+ ++++ L + LPV F IL
Sbjct: 511 PVYLGETVQPEVRGTLGLLPTAFGNIGILLCFVAGSFMNWSMLAFLGAALPVPFLILMFL 570
Query: 190 VPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLK---SKTGYLELLT 246
+PETP + ++ ++ K+L W RG + DV E+ +M ++Q D ++ LELL
Sbjct: 571 IPETPRWFVSRGREERARKALSWLRGKEADVEPELKGLM-RSQADADRQATQNTMLELL- 628
Query: 247 NKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNF 306
++N + ++ + FQ+L GI ++I Y+ + + G + C ++ ++ FL+ F
Sbjct: 629 KRNNLKPLSISLGLMFFQQLSGINAVIFYTVQIFKDAGSTIDG-NICTIIVGVVNFLATF 687
Query: 307 LQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELP---NFQYIPYITTLLYAASY 363
+ L+D GRK L S L F G F+ + P N ++P ++Y +
Sbjct: 688 IGIVLIDRAGRKILLYVSNIAMILTLFVLGGFFYCKAHGPDVSNLGWLPLTCFVIYILGF 747
Query: 364 -YGIGCLPNILVSELFPINVRCQASSCASVALAFG---SFITTKFHILITKSLGQHVIFF 419
G G +P +++ E+ P +R S ASVA AF +F+ TK +T ++G H F+
Sbjct: 748 SLGFGPIPWLMMGEILPAKIR---GSAASVATAFNWSCTFVVTKTFQDLTVAMGAHGAFW 804
Query: 420 IYSSVHFCSVVFNYFYLMETKQKTLAEIQESIMNSHKQL 458
++ ++ F + F Y+ ET+ KTL +I+ +M +++
Sbjct: 805 LFGAICFVGLFFVIIYVPETQGKTLEDIERKMMGRVRRM 843
|
Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Drosophila erecta (taxid: 7220) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 515 | ||||||
| 291461587 | 450 | sugar transporter 14 [Nilaparvata lugens | 0.856 | 0.98 | 0.348 | 3e-79 | |
| 193610443 | 466 | PREDICTED: facilitated trehalose transpo | 0.873 | 0.965 | 0.333 | 4e-75 | |
| 328697684 | 492 | PREDICTED: facilitated trehalose transpo | 0.864 | 0.904 | 0.354 | 3e-73 | |
| 328723330 | 466 | PREDICTED: facilitated trehalose transpo | 0.873 | 0.965 | 0.331 | 6e-71 | |
| 328699079 | 480 | PREDICTED: facilitated trehalose transpo | 0.885 | 0.95 | 0.337 | 1e-63 | |
| 328723117 | 451 | PREDICTED: facilitated trehalose transpo | 0.817 | 0.933 | 0.345 | 6e-61 | |
| 328723119 | 431 | PREDICTED: facilitated trehalose transpo | 0.807 | 0.965 | 0.347 | 7e-61 | |
| 328703922 | 466 | PREDICTED: facilitated trehalose transpo | 0.848 | 0.937 | 0.306 | 6e-56 | |
| 193598979 | 534 | PREDICTED: facilitated trehalose transpo | 0.875 | 0.844 | 0.297 | 3e-52 | |
| 242022754 | 473 | sugar transporter, putative [Pediculus h | 0.856 | 0.932 | 0.331 | 3e-51 |
| >gi|291461587|dbj|BAI83428.1| sugar transporter 14 [Nilaparvata lugens] | Back alignment and taxonomy information |
|---|
Score = 302 bits (773), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 159/456 (34%), Positives = 278/456 (60%), Gaps = 15/456 (3%)
Query: 1 MGVFKRSYVYQIIATNTASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSW 60
M VF+ + A +A I + + GCW+AWPS +++L + + + ++SW
Sbjct: 1 MSVFRETS-----AAVSACICMFVTGCWLAWPSPALRKLEVQG----GANVFIEGDEISW 51
Query: 61 MVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALLCLPTWFLV-VSNKIECLYIARLFIG 119
+V+ LD+GN +SPI A LV++IGRK LL L L W L V L+++R G
Sbjct: 52 VVASLDVGNMVSPIPASYLVDRIGRKPVLLATGPLYLICWMLTFVPGTPYFLFLSRFLSG 111
Query: 120 ISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHVSYNSLNIALSIL 179
I KG+A++ P+++GEI+ +RGA+ +I +G G+L + ++G VSY LN +I
Sbjct: 112 IGKGIAFSICPMYLGEIASVEVRGAISTISTGALWGGSLLMFIVGPLVSYQWLNTIGAIF 171
Query: 180 PVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYR--GNKKDVMEEMNSIMDKTQEDLKS 237
P+IFF+ F ++PE+P+ +N +++ KSL+W R ++ + +E+ + + +E++K+
Sbjct: 172 PIIFFMTFLWIPESPYGCLMRNKVEEARKSLQWLREGADQLTIEKELEQMKENVEEEMKT 231
Query: 238 KTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVF 297
K +++L+ SNR+A T+VM +S FQRL GI++++ +SST LP + +F Q I+VF
Sbjct: 232 KGTFVDLVAIPSNRKATTIVMVSSAFQRLCGISAVLAFSSTTLPNVGFQFFHVSQVIVVF 291
Query: 298 MIIMFLSNFLQAPLMDILGRKPLSCFSAALG-CLLTFSTGLFYLYQGELPNFQYIPYITT 356
I++ + NFL PL+D LGRKPL F++++G + T ++G +YL + + ++PY+
Sbjct: 292 GIVLTIGNFLATPLVDHLGRKPL-LFASSIGLAISTATSGFYYLLRKDPEQAAWLPYMAL 350
Query: 357 LLYAASY-YGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQH 415
+ + + G+G +P+ L+SELFP NV+ +A++ +S+ A SF+T K + + S+G H
Sbjct: 351 VCFGIFHSIGLGVIPSTLLSELFPANVKSRAAAVSSIVFAAASFVTNKMYHPVQHSIGTH 410
Query: 416 VIFFIYSSVHFCSVVFNYFYLMETKQKTLAEIQESI 451
+FF +S +FN ++ ETK K+ +IQ+ +
Sbjct: 411 AMFFFFSMNAVIFTIFNALFIFETKGKSFPDIQKRL 446
|
Source: Nilaparvata lugens Species: Nilaparvata lugens Genus: Nilaparvata Family: Delphacidae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|193610443|ref|XP_001952640.1| PREDICTED: facilitated trehalose transporter Tret1-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 288 bits (738), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 157/471 (33%), Positives = 278/471 (59%), Gaps = 21/471 (4%)
Query: 2 GVFKRSYVYQIIATNTASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWM 61
GV++++YV T A++S+ I+G W+ WPS ++++ + D + +LSW+
Sbjct: 5 GVYRQTYV-----TVVATMSIFISGMWLGWPSSVVEKFVNHKTDFN-----VTMDELSWI 54
Query: 62 VSLLDLGNAISPIFAGILVEKIGRKTTLLLNALLCLPTWFLVVSNKIE-CLYIARLFIGI 120
V+ +DLGN ISP+ AG L++ +GRK ++++ L + +W L + LY ARL G+
Sbjct: 55 VATMDLGNMISPLMAGHLMDWMGRKLSIVVLGPLFIVSWALTLFVPTPWALYTARLLAGM 114
Query: 121 SKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHVSYNSLNIALSILP 180
KG++YT +P+++GEI+ IRG LGS+ G L +IG VSY +LN+ +++P
Sbjct: 115 GKGMSYTVVPVYLGEIASPAIRGGLGSVFCLQLHCGLLMESIIGPLVSYRTLNVVSAVVP 174
Query: 181 VIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTG 240
V+FF +VPE+P++ +N + L+W+RG DV+ E++ + ++++++++
Sbjct: 175 VLFFAAVVWVPESPYYLLKRNRRPQAAVCLQWFRGGG-DVVHELDQMEVNVRKEMENRST 233
Query: 241 YLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMII 300
+ EL ++ + RA ++V+AA QR GGI+ ++ YSS +LP + Q I++F +
Sbjct: 234 FQELFASRKDMRALSIVVAACAAQRGGGISCILAYSSLILPD-NGPLLNKHQSIMLFGVT 292
Query: 301 MFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLF-YLYQGELPNFQ-----YIPYI 354
M + NF+ L+D +GRKPL S A +LT + +F Y +G+ ++ ++PY+
Sbjct: 293 MVVVNFVAVALVDRVGRKPLLLLSEAGMAVLTLTFAVFFYCSRGDGSDWASRELAWLPYL 352
Query: 355 TTLLYAASYY-GIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLG 413
+A + G+G +P + + E+FP+N+R S+ AS+ LAF SF+T K + ++ G
Sbjct: 353 CHWSFAVMFATGVGFVPVVFLGEMFPVNIRSHCSAIASITLAFCSFVTNKMFLFVSDRYG 412
Query: 414 QHVIFFIYSSVHFCSVVFNYFYLMETKQKTLAEIQESIMNSHKQLRREKTS 464
H +F +++ V+ + Y Y +ETK KTL EIQE + ++ RR KT+
Sbjct: 413 VHAMFLLFTVVNLVGTFYTYKYAIETKGKTLQEIQEQLQDTVGP-RRGKTN 462
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328697684|ref|XP_003240408.1| PREDICTED: facilitated trehalose transporter Tret1-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 282 bits (721), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 168/474 (35%), Positives = 275/474 (58%), Gaps = 29/474 (6%)
Query: 11 QIIATNTASISLLIAGCWIAWPSVMIKR-LTDENPDLENIGIRLNKYQLSWMVSLLDLGN 69
QI AT AS+S+ I+G W+ WPS ++ + E DL + QLSW+V ++DLGN
Sbjct: 9 QIYATIAASMSIFISGMWLGWPSSACEKFIKHETGDLH-----VTYDQLSWIVCMMDLGN 63
Query: 70 AISPIFAGILVEKIGRKTTLLLNALLCLPTWFLVV-SNKIECLYIARLFIGISKGVAYTA 128
ISP+F G L+++ GRK + L + +W L + LY ARL G+ KGV+YT
Sbjct: 64 FISPLFGGYLMDRYGRKMVIAALGPLFIVSWALTLFVPTTVALYTARLMAGLGKGVSYTV 123
Query: 129 MPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHVSYNSLNIALSILPVIFFILFS 188
+P+F+GEI+ +IRGALGS+ + G L +++G +VSY++LN +++PV+FF F
Sbjct: 124 VPVFLGEIAGVSIRGALGSVFTIQLSCGVLFEVIVGPYVSYHTLNATSAVVPVLFFAAFL 183
Query: 189 FVPETPHFHAAKNNLKKTEKSLKWYRG------------NKKDVMEEMNSIMDKTQEDLK 236
+VPE+P++ L + + L+WYRG V E+ + ++D++
Sbjct: 184 WVPESPYYLLKVGRLAEATRCLRWYRGCDGESGSGDDDDGDATVAAELRLMEVNVRKDME 243
Query: 237 SKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILV 296
+ + EL N++N RA +V+ A + QR GGI+S+ YS+ +LP+ + G + I+
Sbjct: 244 NGSALSELFANRNNFRALAVVVVACMGQRAGGISSLTAYSALILPE-PSPIMGKFEFIIA 302
Query: 297 FMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYL----YQGELPNFQYIP 352
F +++ + NF+ L+D +GRKPL S A L+TF G++Y Y G ++++P
Sbjct: 303 FAVVLVVVNFVGLALVDRVGRKPLLIVSEAGLGLVTFVFGVYYFAAEHYPGAAAAYRWLP 362
Query: 353 YITTLLYAASY-YGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKS 411
Y+ +AA++ GIG +P + + E+FP+NVR + S+ ASV LAF SF++ K ++++
Sbjct: 363 YVCHTTFAATFSIGIGFIPVVFLGEMFPVNVRSRCSAFASVTLAFFSFVSNKTFLVVSHK 422
Query: 412 LGQHVIFFIYSSVHFCSVVFNYFYLMETKQKTLAEIQE----SIMNSHKQLRRE 461
G + +F+ +S+V+F F++ Y +ET KT EIQE S+ N RR
Sbjct: 423 YGYYTMFWAFSAVNFACAYFSHRYAVETTGKTFVEIQEILDDSVRNGPGTRRRN 476
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328723330|ref|XP_001952643.2| PREDICTED: facilitated trehalose transporter Tret1-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 274 bits (701), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 157/474 (33%), Positives = 278/474 (58%), Gaps = 24/474 (5%)
Query: 3 VFKRSYVYQIIATNTASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMV 62
+FK+ QI T A++S+ I+G W+ WPS ++++ D +LSW+V
Sbjct: 1 MFKKGVYRQIYVTIVATMSIFISGMWLGWPSSVVEKFVKHETDFNA-----TMDELSWIV 55
Query: 63 SLLDLGNAISPIFAGILVEKIGRKTTLLLNALLCLPTWFLVVSNKIE-CLYIARLFIGIS 121
+ +DLGN ISP+ A L++ +GRK ++++ L + +W L + LY ARL G+
Sbjct: 56 ATMDLGNVISPLMASHLMDWMGRKLSIVVLGPLFIVSWALTLFVPTPWALYTARLLGGMG 115
Query: 122 KGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHVSYNSLNIALSILPV 181
KG++YT +P+++GEI+ IRGALGS+ G L +IG VSY +LN+ +++PV
Sbjct: 116 KGMSYTVVPVYLGEIASPAIRGALGSVFCLQLHFGFLMEAVIGPLVSYRTLNVVSAVVPV 175
Query: 182 IFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGY 241
+FF+ ++PE+P++ + + L+W+RG DV+ E++ + ++++++++ +
Sbjct: 176 LFFVAAVWLPESPYYLLKRGRRPQAAVCLQWFRGGG-DVVHELDLMEVNVRKEMENRSTF 234
Query: 242 LELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGP----DQCILVF 297
EL ++ + RA +V+AA QR GGI+ ++ YSS +LP DN GP + +++F
Sbjct: 235 QELFASRKDMRALAIVVAACATQRGGGISCILAYSSLILP--DN---GPLLNKHESVMLF 289
Query: 298 MIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLF-YLYQGELPNFQ-----YI 351
+ + + N + L+D +GRKPL S A +LT + +F Y +G+ ++ ++
Sbjct: 290 AVTLAVVNLVAVALVDRVGRKPLLLLSEAGMAVLTLTFAVFFYCSRGDGSDWASRELAWL 349
Query: 352 PYITTLLYAASYY-GIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITK 410
PY+ +A + G+G +P + + E+FP+N+R S+ AS+ LAF SF+T K + ++
Sbjct: 350 PYLCHWSFAVMFATGVGFVPVVFLGEMFPVNIRSHCSAIASITLAFCSFVTNKMFLFVSN 409
Query: 411 SLGQHVIFFIYSSVHFCSVVFNYFYLMETKQKTLAEIQESIMNSHKQLRREKTS 464
G H +F +++ V+F + Y Y +ETK KTL EIQE + ++ + RREKT+
Sbjct: 410 RYGFHAMFLLFTVVNFAGTFYTYKYAIETKGKTLQEIQEQLQDTVGR-RREKTN 462
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328699079|ref|XP_001946696.2| PREDICTED: facilitated trehalose transporter Tret1-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 250 bits (639), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 159/471 (33%), Positives = 257/471 (54%), Gaps = 15/471 (3%)
Query: 2 GVFKRSYVYQIIATNTASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWM 61
G F + Q +A AS+S+++AG + WPS ++ +L++ + + Q SWM
Sbjct: 4 GFFNKPVGRQYVAAFVASLSVMMAGTSLGWPSPVLAKLSNGG-----LTMAATNEQQSWM 58
Query: 62 VSLLDLGNAISPIFAGILVEKIGRKTTLLLNALLCLPTWFLVV-SNKIECLYIARLFIGI 120
+++L+LGN +SPI G+LV+ +GRK LLL L + +W +V+ S+ I LY RL G
Sbjct: 59 IAMLELGNLLSPIPFGVLVDVVGRKPCLLLTGPLYIVSWLMVMCSDTIGVLYWVRLLQGA 118
Query: 121 SKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHVSYNSLNIALSILP 180
G+ T PI+IGEI+ +IRGAL + +G G L + +G VSY++L ++P
Sbjct: 119 CIGIITTVAPIYIGEIAGDSIRGALSTFFNGMLNAGILYVYCVGPLVSYDALTYYSLLVP 178
Query: 181 VIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKD--VMEEMNSIMDKTQEDLKSK 238
F ++PE+P+++ +++ KK +S+ W GN + V+ E+ I + ++DL+ K
Sbjct: 179 CAFLGTCLWIPESPYYYVLRDDDKKAHESVAWLHGNAEPDVVVRELMRIKAEARDDLQDK 238
Query: 239 TGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLD-NAYFGPDQCILVF 297
+L ++ +R+AF +V + L G+T+++ Y+S+ D + PDQ ++
Sbjct: 239 GSIRDLFGSRCSRKAFLIVQIVAAADVLSGMTTVLAYASSTFAHADTDKTLSPDQFTMLL 298
Query: 298 MIIMFLSNFLQAPLMDILGRKPLSCFSAALGC-LLTFSTGLFYL--YQGELPNFQYIPYI 354
+++F + F+ L+D LGR+PL FS GC TGL+Y + G +IP+
Sbjct: 299 GVLIFCTTFVTGYLVDKLGRRPLLLFS-CFGCGAFELVTGLYYYKRWVGFESLGAWIPFT 357
Query: 355 TTLLYAASY-YGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLG 413
+A Y G+G L L E+FP NVR AS+ SV L SF+ K + +IT G
Sbjct: 358 AIGSFAVIYSIGLGPLLPTLQGEMFPSNVRGLASAITSVTLTVISFVGLKMYQVITDQWG 417
Query: 414 QHVIFFIYSSVHFCSVVFNYFYLMETKQKTLAEIQESIMNS-HKQLRREKT 463
HV +FIY + S + Y +L ETK KT A+IQ IM + + R KT
Sbjct: 418 IHVNYFIYGTGCLMSFLLIYRFLPETKGKTFAQIQNEIMKTIDDRPSRGKT 468
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328723117|ref|XP_003247762.1| PREDICTED: facilitated trehalose transporter Tret1-like isoform 1 [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 241 bits (616), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 152/440 (34%), Positives = 236/440 (53%), Gaps = 19/440 (4%)
Query: 18 ASISLLIAGCWIAW--PSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIF 75
A + ++ G WI W P+ + + D+ N G+ MV++ DLGN ISPI
Sbjct: 19 ACMGYMVCGNWIGWSSPATYLMKHNHTELDVTNYGM---------MVAMYDLGNLISPIP 69
Query: 76 AGILVEKIGRKTTLLLNALLCLPTWF--LVVSNKIECLYIARLFIGISKGVAYTAMPIFI 133
G + GRK T+ + L + W LV ++++ LY ARLF G++KG+ +++PI++
Sbjct: 70 CGYFLGLFGRKLTISIIGPLNMLAWIAILVWPSRLDVLYAARLFAGLAKGMTLSSIPIYV 129
Query: 134 GEISEHNIRGALGSIPSGFQMVGTLAILLIGNHVSYNSLNIALSILPVIFFILFSFVPET 193
GEI+E +RG++ S+ G LA+ IG Y LN+ +F +LF +PE+
Sbjct: 130 GEIAEVKLRGSVLSMFPIMLAAGMLAMQTIGRVFDYRQLNMLGLFFSTVFTVLFFVMPES 189
Query: 194 PHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGYLELLTNKSNRRA 253
P++ K + EKSL+ R K DV +E+ I + ++SK Y EL NKSNR+A
Sbjct: 190 PYYLMQKGRRDQAEKSLRRIRA-KDDVTDELEMIEKTVTKQMQSKATYSELFMNKSNRKA 248
Query: 254 FTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMD 313
F + AS+FQRL GI+ I +SS LP + + P ++VF + + NF+ L+D
Sbjct: 249 FAITAGASVFQRLSGISPFIHFSSITLPS-THYWMNPLVAVMVFTLTKSVGNFVPLVLVD 307
Query: 314 ILGRKPLSCFSAALGCLLT--FSTGLFYLYQG-ELPNFQYIPYITTLLYAASY-YGIGCL 369
+GRKPL S A L+T + GL+ + G E F + P ++ YA SY G G L
Sbjct: 308 WMGRKPLMVVSHAAMALVTAAYGVGLYVVANGPEDKPFAWWPVVSLWAYALSYSLGAGTL 367
Query: 370 PNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSV 429
L+ E+F NV+ +A+ + LA GSF+ + I ++ G H +F+YS+ +
Sbjct: 368 TYTLLGEMFAANVKTRAAPLCVMMLAGGSFVLDGTYTTIAQAFGVHSNYFMYSAFNLIWA 427
Query: 430 VFNYFYLMETKQKTLAEIQE 449
V F ++ETK KT EI+E
Sbjct: 428 VTAGFVMVETKGKTFLEIEE 447
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328723119|ref|XP_003247763.1| PREDICTED: facilitated trehalose transporter Tret1-like isoform 2 [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 241 bits (615), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 151/435 (34%), Positives = 234/435 (53%), Gaps = 19/435 (4%)
Query: 23 LIAGCWIAW--PSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILV 80
++ G WI W P+ + + D+ N G+ MV++ DLGN ISPI G +
Sbjct: 4 MVCGNWIGWSSPATYLMKHNHTELDVTNYGM---------MVAMYDLGNLISPIPCGYFL 54
Query: 81 EKIGRKTTLLLNALLCLPTWF--LVVSNKIECLYIARLFIGISKGVAYTAMPIFIGEISE 138
GRK T+ + L + W LV ++++ LY ARLF G++KG+ +++PI++GEI+E
Sbjct: 55 GLFGRKLTISIIGPLNMLAWIAILVWPSRLDVLYAARLFAGLAKGMTLSSIPIYVGEIAE 114
Query: 139 HNIRGALGSIPSGFQMVGTLAILLIGNHVSYNSLNIALSILPVIFFILFSFVPETPHFHA 198
+RG++ S+ G LA+ IG Y LN+ +F +LF +PE+P++
Sbjct: 115 VKLRGSVLSMFPIMLAAGMLAMQTIGRVFDYRQLNMLGLFFSTVFTVLFFVMPESPYYLM 174
Query: 199 AKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGYLELLTNKSNRRAFTLVM 258
K + EKSL+ R K DV +E+ I + ++SK Y EL NKSNR+AF +
Sbjct: 175 QKGRRDQAEKSLRRIRA-KDDVTDELEMIEKTVTKQMQSKATYSELFMNKSNRKAFAITA 233
Query: 259 AASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRK 318
AS+FQRL GI+ I +SS LP + + P ++VF + + NF+ L+D +GRK
Sbjct: 234 GASVFQRLSGISPFIHFSSITLPS-THYWMNPLVAVMVFTLTKSVGNFVPLVLVDWMGRK 292
Query: 319 PLSCFSAALGCLLT--FSTGLFYLYQG-ELPNFQYIPYITTLLYAASY-YGIGCLPNILV 374
PL S A L+T + GL+ + G E F + P ++ YA SY G G L L+
Sbjct: 293 PLMVVSHAAMALVTAAYGVGLYVVANGPEDKPFAWWPVVSLWAYALSYSLGAGTLTYTLL 352
Query: 375 SELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFNYF 434
E+F NV+ +A+ + LA GSF+ + I ++ G H +F+YS+ + V F
Sbjct: 353 GEMFAANVKTRAAPLCVMMLAGGSFVLDGTYTTIAQAFGVHSNYFMYSAFNLIWAVTAGF 412
Query: 435 YLMETKQKTLAEIQE 449
++ETK KT EI+E
Sbjct: 413 VMVETKGKTFLEIEE 427
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328703922|ref|XP_001945667.2| PREDICTED: facilitated trehalose transporter Tret1-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 224 bits (572), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 138/450 (30%), Positives = 229/450 (50%), Gaps = 13/450 (2%)
Query: 5 KRSYVYQIIATNTASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSL 64
++ VY +I T S+S ++ G W WPS + + T+ + E L++ SW V+
Sbjct: 3 RKRLVYAVI---TVSVSEVLMGLWAGWPSWALTKGTEADTPAE----WLSRQDHSWAVAS 55
Query: 65 LDLGNAISPIFAGILVEKIGRKTTLLLNALLCLPTWFLVVSNKIECLYIARLFIGISKGV 124
DL N +S A +L E GRK LL + + ++ ++ + ++ AR G K V
Sbjct: 56 FDLANLVSAWPASLLAEYAGRKGCLLAVGVALVASFGVLFAPSRWAVFAARSLAGFCKAV 115
Query: 125 AYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHVSYNSLNIALSILPVIFF 184
Y ++P F+ EIS RG L I +G LA L +G V Y +N ++ + F
Sbjct: 116 LYASVPGFMAEISADQARGRLNVIVVLSDSLGMLAALSLGPRVPYVIMNGFSMVIGLAFL 175
Query: 185 ILFSFVPETPHFHAAKNNLKKTEKSLKWY--RGNKKDVMEEMNSIMDKTQEDLKSKTGYL 242
VPETPH+ +K+ + +L+WY R D +N IM Q+D++ Y
Sbjct: 176 AAVIRVPETPHYLLSKSRMDDARTALRWYRPRSTSTDNNRRLNQIMLAVQDDMRDPGTYR 235
Query: 243 ELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMF 302
EL T+ NR A LV+ A QR GG+ ++ YS+T +P + P+ +VF ++
Sbjct: 236 ELFTDDGNRAAVLLVVGACFAQRAGGVGCVLAYSTTTMPT--HGPVRPENVAIVFAVVRL 293
Query: 303 LSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAAS 362
+ + PL+D+ GR+PL+ S +T + L LY + P+ + P +L++ +
Sbjct: 294 ACSVVAVPLIDLYGRRPLTLGSHLALAAITAAYALCLLYIDDRPD-NWGPSACVILFSMA 352
Query: 363 Y-YGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIY 421
Y G G +P LV E+FP NV+ A + S+ + GSFI K ++ I+ + G H++FF++
Sbjct: 353 YSMGAGIVPGALVGEMFPNNVKSHAVTVVSLVSSLGSFIINKAYLPISDAFGVHIMFFVF 412
Query: 422 SSVHFCSVVFNYFYLMETKQKTLAEIQESI 451
V+ + Y +L ETK +L+ IQ+ +
Sbjct: 413 CIVNAAWAILAYLFLFETKGMSLSAIQDHL 442
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|193598979|ref|XP_001950697.1| PREDICTED: facilitated trehalose transporter Tret1-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 213 bits (541), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 139/467 (29%), Positives = 257/467 (55%), Gaps = 16/467 (3%)
Query: 6 RSYVYQIIATNTASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLL 65
RS + +A T ++ L AGC + W S + +L EN D G++++ Q SW+ SL+
Sbjct: 73 RSSLNLYLAACTVNMGALAAGCALTWSSPTLVKL--ENGD---TGMKISSDQSSWVGSLV 127
Query: 66 DLGNAISPIFAGILVEKIGRKTTLLLNALLCLPTWFLVVS-NKIECLYIARLFIGISKGV 124
LG AI PI AG+L++++GRK T+LL+ +L +W ++ + I LY+AR+ GI+ G+
Sbjct: 128 TLGAAIGPILAGLLLDRLGRKNTILLSMILSAISWIIIGAVPGIFSLYVARVLAGIAVGI 187
Query: 125 AYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHVSYNSLNIALSILPVIFF 184
+TA+P++I EI+E +R +LG++ F +VG L ++G + SY +L I PV+ F
Sbjct: 188 IFTAVPMYIAEIAEMRLRSSLGTLMQFFLVVGFLLEYIVGPYTSYLTLVIVSLATPVLCF 247
Query: 185 ILFSFVPETPHFHAAK-NNLKKTEKSLKWYRGNKKD--VMEEMNSIMDKTQEDLKSKTGY 241
+F ++P++P + +K +SL+W RGN ++ +++E+ I E K K+G+
Sbjct: 248 GMFVWMPDSPQSLLIRPGGEQKAMESLRWLRGNPQETALIKELEEIKKSVDESKKQKSGF 307
Query: 242 LELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIM 301
EL +N+ N +A + A +Q+L GI ++ YS + K I+V +++
Sbjct: 308 GELFSNRGNIKAVIISCAMVAWQQLSGINVVLLYSEKIFLKTGVELSASVSTIIVGTVML 367
Query: 302 FLSNFLQAPLMDILGRKPLSCFSAALGCLLTFST-GLFYLYQ---GELPNFQYIPYITTL 357
F + P + + + + +A+G +T T GLF+ Q ++ + ++P + +
Sbjct: 368 FAAGL--TPTLAKITTMRMLLYISAIGMAITDGTLGLFFYLQESGSDVSSIGWLPVTSLV 425
Query: 358 LYAASY-YGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHV 416
L+ +Y G G LP ++ E+FP N++ AS+ + F+ TK ++ ++G +
Sbjct: 426 LFIITYCLGFGPLPWAIMGEIFPTNLKSGASALTASFCWLLGFVLTKLFSAVSDAIGIYS 485
Query: 417 IFFIYSSVHFCSVVFNYFYLMETKQKTLAEIQESIMNSHKQLRREKT 463
+F+I++ +++F F L +T+ KTL EIQ+ + +K + T
Sbjct: 486 VFWIFAVCCIFALLFTAFLLPQTEGKTLQEIQDILHGRNKSSNHKMT 532
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|242022754|ref|XP_002431803.1| sugar transporter, putative [Pediculus humanus corporis] gi|212517135|gb|EEB19065.1| sugar transporter, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 209 bits (532), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 152/459 (33%), Positives = 241/459 (52%), Gaps = 18/459 (3%)
Query: 5 KRSYVY-QIIATNTASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVS 63
K+ +Y Q++ +A+++ I G IAW S + L E PD I + K Q SWM S
Sbjct: 24 KKPKMYRQLMVGFSANLASTITGTIIAWTSPSLPIL--EGPDSP---IPITKLQNSWMAS 78
Query: 64 LLDLGNAISPIFAGILVEKIGRKTTLLLNALLCLPTWF-LVVSNKIECLYIARLFIGISK 122
L+ LG P FAG + EK GRK TLL +AL L +W L S +E +Y AR G
Sbjct: 79 LMPLGAIFGPFFAGYVAEKFGRKNTLLFSALPTLVSWIALAFSKSVETIYFARFLAGFVV 138
Query: 123 GVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHVSYNSLNIALSILPVI 182
G +T + +++ EI+ ++RGA+ S+ F +VG L IG +V + L+I + LP+I
Sbjct: 139 GWIFTVISMYLAEIAHKSVRGAILSLSQPFIVVGLLFDYCIGPYVPFMWLSIGAAFLPII 198
Query: 183 FFILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMD--KTQEDLKSKTG 240
F I+F +PE+P++ + EKSL+W RG D E ++D E K ++G
Sbjct: 199 FAIIFFKMPESPYYFLGIGKKNEAEKSLEWLRGGFDD--EAQCELLDIQANVEKAKCESG 256
Query: 241 YL-ELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMI 299
+ +L K +AF + + FQ+ GI +++ S T+ K + P+ ++ +
Sbjct: 257 TIKDLFATKGTTKAFIISLGLMAFQQFSGINAVLFNSQTIFEKAGGS-ISPEGSTIILGL 315
Query: 300 IMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGL-FYLYQG--ELPNFQYIPYITT 356
IM L++ + ++D LGRK L SAA GL FYL + + + ++P ++
Sbjct: 316 IMLLASVVTPFVVDRLGRKVLLITSAAGMAAAQGIIGLCFYLEKTGRDTSSINFLPLVSL 375
Query: 357 LLYAASY-YGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQH 415
+ Y Y G G LP ++ E+FP NV+ AS+ S +F+ T+F ++LG
Sbjct: 376 VEYVIIYSIGFGPLPWAVMGEMFPSNVKSIASTLVSSFCWGLAFLITRFFNDFVETLGND 435
Query: 416 VIFFIYSSVHFCSVVFNYFYLMETKQKTLAEIQESIMNS 454
F+I+ S ++ F YF ETK K+LAEIQ+ ++NS
Sbjct: 436 YTFWIFGSCCIVAIFFIYFIFPETKGKSLAEIQK-LLNS 473
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 515 | ||||||
| UNIPROTKB|B0WC46 | 517 | Tret1 "Facilitated trehalose t | 0.834 | 0.831 | 0.273 | 7.4e-50 | |
| UNIPROTKB|Q7PIR5 | 793 | Tret1 "Facilitated trehalose t | 0.854 | 0.554 | 0.262 | 1.2e-48 | |
| UNIPROTKB|A5LGM7 | 504 | Tret1 "Facilitated trehalose t | 0.858 | 0.876 | 0.270 | 2.3e-48 | |
| FB|FBgn0037387 | 491 | CG1213 [Drosophila melanogaste | 0.846 | 0.887 | 0.286 | 3.7e-48 | |
| UNIPROTKB|Q17NV8 | 806 | Tret1 "Facilitated trehalose t | 0.848 | 0.542 | 0.260 | 8.2e-48 | |
| UNIPROTKB|A9ZSY2 | 502 | Tret1 "Facilitated trehalose t | 0.844 | 0.866 | 0.269 | 2.6e-47 | |
| UNIPROTKB|A9ZSY3 | 505 | Tret1 "Facilitated trehalose t | 0.807 | 0.823 | 0.261 | 1.4e-46 | |
| UNIPROTKB|B4LPX5 | 911 | Tret1 "Facilitated trehalose t | 0.852 | 0.481 | 0.270 | 3.7e-45 | |
| UNIPROTKB|B4KR05 | 863 | Tret1 "Facilitated trehalose t | 0.854 | 0.509 | 0.265 | 3.9e-45 | |
| FB|FBgn0050035 | 857 | Tret1-1 "Trehalose transporter | 0.860 | 0.516 | 0.260 | 4.8e-45 |
| UNIPROTKB|B0WC46 Tret1 "Facilitated trehalose transporter Tret1" [Culex quinquefasciatus (taxid:7176)] | Back alignment and assigned GO terms |
|---|
Score = 519 (187.8 bits), Expect = 7.4e-50, P = 7.4e-50
Identities = 124/453 (27%), Positives = 232/453 (51%)
Query: 11 QIIATNTASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNA 70
Q++A + S+ ++ G A+ S + + D N + SW+ ++ L
Sbjct: 56 QVLAALSVSLGSMVVGFSSAYTSPALVSMKDRNIT----SFEVTDQSGSWVGGIMPLAGL 111
Query: 71 ISPIFAGILVEKIGRKTTXXXXXXXXXPTWFLVV-SNKIECLYIARLFIGISKGVAYTAM 129
+ I G L+E +GRK T +W L+ + + + + R G S GVA ++
Sbjct: 112 VGGILGGPLIEYLGRKNTILATATPFIISWLLIACATHVAMVLVGRALSGFSVGVASLSL 171
Query: 130 PIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHVSYNSLNIALSILPVIFFILFSF 189
P+++GE + +RG LG +P+ F +G L + GN++ ++ L + LPV F IL
Sbjct: 172 PVYLGETVQPEVRGTLGLLPTAFGNIGILLCFVAGNYMDWSELAFLGATLPVPFLILMFL 231
Query: 190 VPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLK---SKTGYLELLT 246
+PETP ++ ++ + K+L+W RG K DV E+ I+ K+ +D + S++ L+LL
Sbjct: 232 IPETPRWYVSRGRDDRARKALQWLRGKKADVDPELKGII-KSHQDAERHASQSAMLDLL- 289
Query: 247 NKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNF 306
K+N + + + FQ+L GI ++I Y+ + + + C ++ ++ F++ F
Sbjct: 290 KKTNLKPLLISLGLMFFQQLSGINAVIFYTVQIFQDAGST-IDENLCTIIVGVVNFIATF 348
Query: 307 LQAPLMDILGRKPLSCFSAALGCLLTFST--GLFYLYQ--GELPNFQYIPYITTLLYAAS 362
+ L+D LGRK L + + + ++T T G FY+ G++ + ++P + +++
Sbjct: 349 IATLLIDRLGRKML-LYISDIAMIITLMTLGGFFYVKNNGGDVSHIGWLPLASFVIFVLG 407
Query: 363 Y-YGIGCLPNILVSELFPINVRCQASSCASVALAFG---SFITTKFHILITKSLGQHVIF 418
+ G G +P +++ E+ P +R S ASVA AF +F+ TK I S+G H F
Sbjct: 408 FSLGFGPIPWLMMGEILPGKIR---GSAASVATAFNWSCTFVVTKTFADIIASIGTHGAF 464
Query: 419 FIYSSVHFCSVVFNYFYLMETKQKTLAEIQESI 451
+++ SV +VF Y+ ET+ K+L +I+ +
Sbjct: 465 WMFGSVCVVGLVFVIMYVPETQGKSLEDIERKM 497
|
|
| UNIPROTKB|Q7PIR5 Tret1 "Facilitated trehalose transporter Tret1" [Anopheles gambiae (taxid:7165)] | Back alignment and assigned GO terms |
|---|
Score = 512 (185.3 bits), Expect = 1.2e-48, P = 1.2e-48
Identities = 122/464 (26%), Positives = 233/464 (50%)
Query: 8 YVY-QIIATNTASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLD 66
Y++ Q++A + S+ ++ G A+ S + + D N + SW+ ++
Sbjct: 328 YIWTQVLAALSVSLGSMVVGFSSAYTSPALVSMKDRNIT----SFEVTDQSGSWVGGIMP 383
Query: 67 LGNAISPIFAGILVEKIGRKTTXXXXXXXXXPTWFLV-VSNKIECLYIARLFIGISKGVA 125
L I G ++E +GRK T +W L+ + + + + R G+ G+A
Sbjct: 384 LAGLAGGILGGPMIEYLGRKNTILATATPFIISWLLIGCATHVAMVLVGRALSGLCVGIA 443
Query: 126 YTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHVSYNSLNIALSILPVIFFI 185
++P+++GE + +RG LG +P+ F +G L + G ++ ++ L + LP+ F +
Sbjct: 444 SLSLPVYLGETVQPEVRGTLGLLPTAFGNIGILLCFVAGKYLDWSGLAFLGAALPIPFLL 503
Query: 186 LFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLK---SKTGYL 242
L +PETP ++ ++N + K+L+W RG K DV E+ I K+ +D + S + L
Sbjct: 504 LMFLIPETPRWYVSRNREDRARKALQWLRGRKADVEPELKGI-SKSHQDAERHASSSAML 562
Query: 243 ELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMF 302
+LL NK+N + + + FQ+L GI ++I Y+ + + C ++ ++ F
Sbjct: 563 DLL-NKANLKPLLISLGLMFFQQLSGINAVIFYTVQIFQSAGST-IDEKLCTIIVGVVNF 620
Query: 303 LSNFLQAPLMDILGRKPLSCFS--AALGCLLTFSTGLFYLYQG--ELPNFQYIPYITTLL 358
++ F+ L+D LGRK L S A + L+T T FY+ ++ ++P ++
Sbjct: 621 IATFIATVLIDRLGRKILLYISDVAMIITLMTLGT-FFYMKNNGDDVSEIGWLPLAAFVV 679
Query: 359 YAASY-YGIGCLPNILVSELFPINVRCQASSCASVALAFG---SFITTKFHILITKSLGQ 414
+ + G G +P +++ E+ P +R S ASVA AF +F+ TK IT S+G
Sbjct: 680 FVVGFSLGFGPIPWLMMGEILPGKIR---GSAASVATAFNWSCTFVVTKTFADITASIGN 736
Query: 415 HVIFFIYSSVHFCSVVFNYFYLMETKQKTLAEIQESIMNSHKQL 458
H F+++ S+ ++F Y+ ET+ K+L +I+ +M +++
Sbjct: 737 HGAFWMFGSICIVGLLFVIVYVPETQGKSLEDIERKMMGRVRRM 780
|
|
| UNIPROTKB|A5LGM7 Tret1 "Facilitated trehalose transporter Tret1" [Polypedilum vanderplanki (taxid:319348)] | Back alignment and assigned GO terms |
|---|
Score = 505 (182.8 bits), Expect = 2.3e-48, P = 2.3e-48
Identities = 125/462 (27%), Positives = 230/462 (49%)
Query: 8 YVY-QIIATNTASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLD 66
Y+Y QI+A S+ ++ G A+ S + + +N + + ++ + + SW+ ++
Sbjct: 39 YIYTQILAAIAVSMGSMVVGFASAYTSPALVSM--QNTTITSF--KVTEQEASWVGGIMP 94
Query: 67 LGNAISPIFAGILVEKIGRKTTXXXXXXXXXPTWFLVV-SNKIECLYIARLFIGISKGVA 125
L I G +E +GRK T W L+ +N I + R G G+A
Sbjct: 95 LAGLAGGIAGGPFIEYLGRKNTILATAVPFIVAWLLIAFANSIWMVLAGRALSGFCVGIA 154
Query: 126 YTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHVSYNSLNIALSILPVIFFI 185
++P+++GE + +RG LG +P+ F +G L + G +V+++ L SILP+ F +
Sbjct: 155 SLSLPVYLGETVQPEVRGTLGLLPTAFGNIGILICFVAGKYVNWSGLAFIGSILPIPFMV 214
Query: 186 LFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLK--SKTGYLE 243
L +PETP + + ++ K+L+W RG K DV E+ I+ E + S+ +
Sbjct: 215 LTLLIPETPRWFVTRGREERARKALQWLRGKKADVEPELKGIVKSHCEAERHASQNAIFD 274
Query: 244 LLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFL 303
L+ +SN + + + FQ+L GI ++I Y+ ++ K + + C ++ ++ F
Sbjct: 275 LM-KRSNLKPLLIALGLMFFQQLSGINAVIFYTVSIF-KDAGSTIDENLCTIIVGVVNFG 332
Query: 304 SNFLQAPLMDILGRKPLSCFS--AALGCLLTFSTGLFYLYQG-ELPNFQYIPYITTLLYA 360
+ F L+D LGRK L S A + LLT T +Y G ++ N ++P + ++Y
Sbjct: 333 ATFFATVLIDRLGRKILLYISEVAMVITLLTLGTFFYYKNSGNDVSNIGWLPLASFVIYV 392
Query: 361 ASYY-GIGCLPNILVSELFPINVRCQASSCASVALAFG---SFITTKFHILITKSLGQHV 416
+ G+G +P +++ E+ P +R S ASVA F +FI TK I ++G H
Sbjct: 393 IGFSSGVGPIPWLMLGEILPGKIR---GSAASVATGFNWTCTFIVTKTFADIVAAIGNHG 449
Query: 417 IFFIYSSVHFCSVVFNYFYLMETKQKTLAEIQESIMNSHKQL 458
F+ + + + F F++ ET+ K+L EI+ +M +++
Sbjct: 450 AFWFFGVICLIGLFFVIFFVPETQGKSLEEIERKMMGRVRRM 491
|
|
| FB|FBgn0037387 CG1213 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 503 (182.1 bits), Expect = 3.7e-48, P = 3.7e-48
Identities = 128/446 (28%), Positives = 228/446 (51%)
Query: 13 IATNTASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAIS 72
+A A++S + G + W S + +L E+ + + + +W+ SL+ +G ++
Sbjct: 44 MAAVAANLSAFVVGTTLGWTSPIGPKLKSEDTSDSPLSRPITSDEDAWISSLIAVGALVA 103
Query: 73 PIFAGILVEKIGRKTTXXXXXXXXXPTWFL-VVSNKIECLYIARLFIGISKGVAYTAMPI 131
P AG + ++IGRK + L +V++++ LY++RL G G T P+
Sbjct: 104 PFVAGPMADRIGRKWVLLSSSLFFVLAFGLNMVASEVWILYMSRLIQGFGVGFVMTVQPM 163
Query: 132 FIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHVSYNSLNIALSILPVIFFILFSFVP 191
++GEIS N+RGA GS+ F + G L + IG +VSY +L ++PV+F ++F +P
Sbjct: 164 YVGEISTDNVRGATGSLMQLFIVGGILYVYAIGPYVSYQALQWCCIVVPVVFDLVFYMMP 223
Query: 192 ETPHFHAAKNNLKKTEKSLKWYRGNKKD-VMEEMNSIMDKTQEDLKSKTGYLELLTNKSN 250
E+P+F A K + KSL++ RG + V +EM I +E + SK ++L N N
Sbjct: 224 ESPYFFAGKGRKSEALKSLQFLRGQSAEGVHDEMAEIQANVEEAMASKGTVMDLFKNAGN 283
Query: 251 RRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAP 310
RRA + FQ+L GI ++ S ++ N P ++ + S+ L
Sbjct: 284 RRALFICAGLISFQQLSGINVVLFNSQSIFASA-NTGLDPAIATIIIGCVQVGSSALTPL 342
Query: 311 LMDILGRKPLSCFSAALGCLLTFSTGLFY---LYQGELPNFQYIPYITTLLYAASYY-GI 366
+ D LGRK + S+++ + + G F+ L +G++ + ++P ++Y Y G
Sbjct: 343 VADRLGRKVMLLTSSSVMSIGLAALGAFFYMQLVKGDISSVVWMPVPALIIYNIVYCTGF 402
Query: 367 GCLPNILVSELFPINVRCQASSC-ASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVH 425
G LP ++ E+FP N++ ASS AS G F+ T F+ + +LG + F++++
Sbjct: 403 GPLPWAVLGEMFPANIKSVASSVVASTCWTLG-FLVTFFYPSLD-ALGSYYAFWLFAVCM 460
Query: 426 FCSVVFNYFYLMETKQKTLAEIQESI 451
+ F F +METK +L +IQ+ +
Sbjct: 461 VVAFFFVLFVVMETKGLSLQQIQDRL 486
|
|
| UNIPROTKB|Q17NV8 Tret1 "Facilitated trehalose transporter Tret1" [Aedes aegypti (taxid:7159)] | Back alignment and assigned GO terms |
|---|
Score = 505 (182.8 bits), Expect = 8.2e-48, P = 8.2e-48
Identities = 120/460 (26%), Positives = 231/460 (50%)
Query: 11 QIIATNTASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNA 70
Q++A + S+ ++ G A+ S + + D N + SW+ ++ L
Sbjct: 345 QVLAALSVSLGSMVVGFSSAYTSPALVSMKDRNIT----SFEVTDQSGSWVGGIMPLAGL 400
Query: 71 ISPIFAGILVEKIGRKTTXXXXXXXXXPTWFLVV-SNKIECLYIARLFIGISKGVAYTAM 129
I G L+E +GRK T +W L+ + + + + R G S GVA ++
Sbjct: 401 AGGILGGPLIEYLGRKNTILATATPFIISWLLIACATHVAMVLVGRALSGFSVGVASLSL 460
Query: 130 PIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHVSYNSLNIALSILPVIFFILFSF 189
P+++GE + +RG LG +P+ F +G L + G ++ ++ L + LP+ F +L
Sbjct: 461 PVYLGETVQPEVRGTLGLLPTAFGNIGILLCFVAGKYMDWSGLAFLGAALPIPFLLLMFL 520
Query: 190 VPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLK---SKTGYLELLT 246
+PETP ++ ++ + K+L+W RG K DV E+ I+ K+ +D + S++ L+L+
Sbjct: 521 IPETPRWYVSRGRDDRARKALQWLRGKKADVDPELKGII-KSHQDAERHASQSAMLDLM- 578
Query: 247 NKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNF 306
K+N + + + FQ+L GI ++I Y+ + + + C ++ ++ F++ F
Sbjct: 579 KKANLKPLLISLGLMFFQQLSGINAVIFYTVQIFQDAGST-IDENLCTIIVGVVNFIATF 637
Query: 307 LQAPLMDILGRKPLSCFSAALGCLLTFST--GLFYLYQG--ELPNFQYIPYITTLLYAAS 362
+ L+D LGRK L + + + ++T T G FY+ ++ ++P ++Y
Sbjct: 638 IATMLIDRLGRKML-LYISDVAMIITLMTLGGFFYVKNSGQDVSQVGWLPLAAFVIYVLG 696
Query: 363 Y-YGIGCLPNILVSELFPINVRCQASSCASVALAFG---SFITTKFHILITKSLGQHVIF 418
+ G G +P +++ E+ P +R S ASVA AF +FI TK I ++G H F
Sbjct: 697 FSLGFGPIPWLMMGEILPGKIR---GSAASVATAFNWSCTFIVTKTFADIINAIGTHGTF 753
Query: 419 FIYSSVHFCSVVFNYFYLMETKQKTLAEIQESIMNSHKQL 458
+++ S+ + F FY+ ET+ K+L +I+ +M +++
Sbjct: 754 WMFGSICVIGLAFVIFYVPETQGKSLEDIERKMMGRVRRM 793
|
|
| UNIPROTKB|A9ZSY2 Tret1 "Facilitated trehalose transporter Tret1" [Apis mellifera ligustica (taxid:7469)] | Back alignment and assigned GO terms |
|---|
Score = 495 (179.3 bits), Expect = 2.6e-47, P = 2.6e-47
Identities = 123/456 (26%), Positives = 234/456 (51%)
Query: 5 KRS---YVYQIIATNTASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWM 61
KRS Y Q++A S++ L+ G ++ S + + D + + + W+
Sbjct: 33 KRSPMRYTMQLLAALAVSMASLMIGYSSSYTSPALVSMRDNTTATFEVTMDM----AMWI 88
Query: 62 VSLLDLGNAISPIFAGILVEKIGRKTTXXXXXXXXXPTW-FLVVSNKIECLYIARLFIGI 120
S++ L I I G +E IGR+ T W F+ ++ + + + R G
Sbjct: 89 GSIMPLSALIGGIIGGPCIEYIGRRNTILSTALPFLAGWLFIALATNVAMILVGRSICGF 148
Query: 121 SKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHVSYNSLNIALSILP 180
GVA ++P+++GE + +RG+LG +P+ F G L G ++++ +L + + +P
Sbjct: 149 CVGVASLSLPVYLGESIQPEVRGSLGLLPTVFGNSGILMCFTAGMYLAWRNLALLGACIP 208
Query: 181 VIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKT- 239
+IF IL +PETP ++ +K +K+ KSL+W RG D+ EE++SI E + T
Sbjct: 209 IIFLILMFLIPETPRWYISKGKIKEARKSLQWLRGKTADISEELDSIQKMHIESERIATE 268
Query: 240 GYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMI 299
G L L K++ + + + FQ+ GI ++I Y+ + K + + ++ +
Sbjct: 269 GALIELFRKNHIKPVFISLGLMFFQQFSGINAVIFYTVQIF-KDSGSTVDENLSTIIVGL 327
Query: 300 IMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPN---FQYIPYITT 356
+ F+S F+ A ++D LGRK L S+ L C+ F+ G F+ Y EL + F +IP ++
Sbjct: 328 VNFISTFVAAMIIDRLGRKMLLYISSILMCITLFTFGTFF-YVKELMDVTAFGWIPLMSL 386
Query: 357 LLYAASY-YGIGCLPNILVSELFPINVRCQASSCASVALAFG---SFITTKFHILITKSL 412
++Y + +G G +P +++ E+ P+ +R + ASVA AF +F+ TK + + +
Sbjct: 387 IVYVIGFSFGFGPIPWLMMGEILPVKIR---GTAASVATAFNWSCTFVVTKTYEDLVLHI 443
Query: 413 GQHVIFFIYSSVHFCSVVFNYFYLMETKQKTLAEIQ 448
G + F+++ ++ + +F + ET+ ++L EI+
Sbjct: 444 GPYGTFWLFGTLVAVAFIFVIICVPETRGRSLEEIE 479
|
|
| UNIPROTKB|A9ZSY3 Tret1 "Facilitated trehalose transporter Tret1" [Bombyx mori (taxid:7091)] | Back alignment and assigned GO terms |
|---|
Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
Identities = 111/424 (26%), Positives = 219/424 (51%)
Query: 48 NIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTXXXXXXXXXPTWFLVVSN- 106
NI + + K +++W+ L+ L + I G L+E +GRK T W L+ +
Sbjct: 80 NITLDITKEEITWVGGLMPLAALVGGIVGGPLIEYLGRKKTIMGTAVPFTIGWMLIANAI 139
Query: 107 KIECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNH 166
+ ++ R+ G+ G+ A P++IGE + +RGALG +P+ F G L L+G++
Sbjct: 140 NVVMVFAGRVICGVCVGIVSLAFPVYIGETIQPEVRGALGLLPTAFGNTGILLAFLVGSY 199
Query: 167 VSYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNS 226
+ +++L + +PV FF+L PETP ++ +K +++ KSL+W RG ++ +EM
Sbjct: 200 LDWSNLAFFGAAIPVPFFLLMILTPETPRWYVSKARVQEARKSLRWLRGKNVNIEKEMRD 259
Query: 227 I-MDKTQEDLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDN 285
+ + +T+ D + +L + K A + + LFQ+L GI ++I Y++++ ++
Sbjct: 260 LTISQTESDRTGGNAFKQLFS-KRYLPAVMISLGLMLFQQLTGINAVIFYAASIF-QMSG 317
Query: 286 AYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGL-FYLYQG- 343
+ + ++ ++ F+S F+ L+D LGRK L S+ + G FYL Q
Sbjct: 318 SSVDENLASIIIGVVNFISTFIATMLIDRLGRKVLLYISSVAMITTLLALGAYFYLKQNH 377
Query: 344 -ELPNFQYIPYITTLLYAASY-YGIGCLPNILVSELFPINVRCQASSCASVALAFGSFIT 401
++ + ++P ++Y + G G +P +++ E+ P +R A+S A+ +FI
Sbjct: 378 IDVTAYGWLPLACLVIYVLGFSIGFGPIPWLMLGEILPSKIRGTAASLATGFNWTCTFIV 437
Query: 402 TKFHILITKSLGQHVIFFIYSSVHFCSVVFNYFYLMETKQKTLAEIQESIMNSHKQLRRE 461
TK I ++ H ++++ + ++F F++ ETK K+L EI+ + + +++R
Sbjct: 438 TKTFQNIIDAIYMHGTLWLFAVICIGGLLFVIFFVPETKGKSLEEIEMKLTSGSRRVRNI 497
Query: 462 KTSP 465
P
Sbjct: 498 SKQP 501
|
|
| UNIPROTKB|B4LPX5 Tret1 "Facilitated trehalose transporter Tret1" [Drosophila virilis (taxid:7244)] | Back alignment and assigned GO terms |
|---|
Score = 483 (175.1 bits), Expect = 3.7e-45, P = 3.7e-45
Identities = 126/465 (27%), Positives = 231/465 (49%)
Query: 8 YVY-QIIATNTASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLD 66
Y++ Q++A + S+ L+ G A+ S + +T+ N L + + SW+ ++
Sbjct: 446 YIWTQVLAALSVSLGSLVVGFASAYTSPALVSMTNTN--LTSFVV--TPQAASWVGGIMP 501
Query: 67 LGNAISPIFAGILVEKIGRKTTXXXXXXXXXPTWFLVVS--NKIECLYIARLFIGISKGV 124
L I G +E +GR+ T +W L+ N I L R G G+
Sbjct: 502 LAGLAGGIAGGPFIEYLGRRNTILATAVPFIVSWLLIACAVNVIMVL-CGRFLAGFCVGI 560
Query: 125 AYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHVSYNSLNIALSILPVIFF 184
A ++P+++GE + +RG LG +P+ F +G L + G ++ ++ L + LPV F
Sbjct: 561 ASLSLPVYLGETVQPEVRGTLGLLPTAFGNIGILLCFVAGTYMDWSMLAFLGASLPVPFL 620
Query: 185 ILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLK---SKTGY 241
IL +PETP ++ ++ ++ K+L W RG + DV E+ +M ++Q D ++
Sbjct: 621 ILMFLIPETPRWYVSRGREERARKALVWLRGKEADVEPELKGLM-RSQADADRQATQNKM 679
Query: 242 LELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIM 301
LELL +SN + ++ + FQ+L GI ++I Y+ + + G + C ++ ++
Sbjct: 680 LELL-KRSNLKPLSISLGLMFFQQLSGINAVIFYTVQIFQDAGSTIDG-NVCTIIVGVVN 737
Query: 302 FLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQG---ELPNFQYIPYITTLL 358
F + F+ L+D GRK L S + L F G F+ + + N ++P ++
Sbjct: 738 FAATFIATILIDRAGRKVLLYVSNVMMVLTLFVLGGFFYCKSSGMDTSNVGWLPLSCFVI 797
Query: 359 YAASY-YGIGCLPNILVSELFPINVRCQASSCASVALAFG---SFITTK-FHILITKSLG 413
Y + G G +P +++ E+ P +R S ASVA AF +F+ TK F +I +G
Sbjct: 798 YILGFSLGFGPIPWLMMGEILPAKIR---GSAASVATAFNWSCTFVVTKSFQDMID-FMG 853
Query: 414 QHVIFFIYSSVHFCSVVFNYFYLMETKQKTLAEIQESIMNSHKQL 458
H F+++ ++ F + F FY+ ET+ KTL +I+ +M +++
Sbjct: 854 AHGAFWMFGAICFIGLFFVIFYVPETQGKTLEDIERKMMGRVRRM 898
|
|
| UNIPROTKB|B4KR05 Tret1 "Facilitated trehalose transporter Tret1" [Drosophila mojavensis (taxid:7230)] | Back alignment and assigned GO terms |
|---|
Score = 482 (174.7 bits), Expect = 3.9e-45, P = 3.9e-45
Identities = 123/464 (26%), Positives = 230/464 (49%)
Query: 8 YVY-QIIATNTASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLD 66
Y++ Q++A + S+ L+ G A+ S + +T+ N L + + SW+ ++
Sbjct: 398 YIWTQVLAALSVSLGSLVVGFASAYTSPALVSMTNTN--LTSFVV--TPQAASWVGGIMP 453
Query: 67 LGNAISPIFAGILVEKIGRKTTXXXXXXXXXPTWFLVV-SNKIECLYIARLFIGISKGVA 125
L I G +E +GR+ T +W L+ + + + R G G+A
Sbjct: 454 LAGLAGGIAGGPFIEYLGRRNTILATAVPFIISWLLIACAVNVVMVLCGRFLAGFCVGIA 513
Query: 126 YTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHVSYNSLNIALSILPVIFFI 185
++P+++GE + +RG LG +P+ F +G L + G ++ ++ L LPV F I
Sbjct: 514 SLSLPVYLGETVQPEVRGTLGLLPTAFGNIGILLCFVAGTYMDWSMLAFLGGTLPVPFLI 573
Query: 186 LFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLK---SKTGYL 242
L +PETP ++ ++ ++ K+L W RG + DV E+ +M ++Q D ++ L
Sbjct: 574 LMFLIPETPRWYVSRGREERARKALVWLRGKEADVEPELKGLM-RSQADADRQATQNTML 632
Query: 243 ELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMF 302
ELL +SN + ++ + FQ+L GI ++I Y+ + + G + C ++ ++ F
Sbjct: 633 ELL-KRSNLKPLSISLGLMFFQQLSGINAVIFYTVQIFQDAGSTIDG-NVCTIIVGVVNF 690
Query: 303 LSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQG---ELPNFQYIPYITTLLY 359
++ F+ L+D GRK L S L F G F+ + + N ++P ++Y
Sbjct: 691 MATFIATVLIDRAGRKILLYVSNVAMILTLFVLGGFFYCKSTGMDTSNVGWLPLSCFVVY 750
Query: 360 AASY-YGIGCLPNILVSELFPINVRCQASSCASVALAFG---SFITTK-FHILITKSLGQ 414
+ G G +P +++ E+ P +R S ASVA AF +F+ TK F +I +G
Sbjct: 751 ILGFSLGFGPIPWLMMGEILPAKIR---GSAASVATAFNWSCTFVVTKSFQDMIDV-MGA 806
Query: 415 HVIFFIYSSVHFCSVVFNYFYLMETKQKTLAEIQESIMNSHKQL 458
H F+++ ++ F + F FY+ ET+ KTL +I+ +M +++
Sbjct: 807 HGAFWMFGAICFVGLFFVIFYVPETQGKTLEDIERKMMGRVRRM 850
|
|
| FB|FBgn0050035 Tret1-1 "Trehalose transporter 1-1" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 481 (174.4 bits), Expect = 4.8e-45, P = 4.8e-45
Identities = 120/461 (26%), Positives = 230/461 (49%)
Query: 8 YVY-QIIATNTASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLD 66
Y++ Q++A + S+ L+ G A+ S + +TD N + + SW+ ++
Sbjct: 392 YIWTQVLAALSVSLGSLVVGFVSAYTSPALVSMTDRNIT----SFEVTQDAGSWVGGIMP 447
Query: 67 LGNAISPIFAGILVEKIGRKTTXXXXXXXXXPTWFLVV-SNKIECLYIARLFIGISKGVA 125
L I G L+E +GR+ T + L+ + + + R G G+A
Sbjct: 448 LAGLAGGIAGGPLIEYLGRRNTILATAVPFIVSSLLIACAVNVAMVLCGRFLAGFCVGIA 507
Query: 126 YTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHVSYNSLNIALSILPVIFFI 185
++P+++GE + +RG LG +P+ F +G L + G+ ++++ L + LPV F I
Sbjct: 508 SLSLPVYLGETVQPEVRGTLGLLPTAFGNIGILLCFVAGSFMNWSMLAFLGAALPVPFLI 567
Query: 186 LFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLK---SKTGYL 242
L +PETP + + ++ K+LKW RG + DV E+ +M ++Q D S+ L
Sbjct: 568 LMFLIPETPRWFVGRGLEERARKALKWLRGKEADVEPELKGLM-RSQADADRQASRNTML 626
Query: 243 ELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMF 302
ELL +N + ++ + FQ+ GI ++I Y+ + + G + C ++ I+ F
Sbjct: 627 ELL-KLNNLKPLSISLGLMFFQQFSGINAVIFYTVQIFKDAGSTIDG-NLCTIIVGIVNF 684
Query: 303 LSNFLQAPLMDILGRKPLSCFSAALGCLLTFST--GLFYL--YQGELPNFQYIPYITTLL 358
L+ F+ L+D GRK L + + + +LT G FY Y ++ + ++P ++
Sbjct: 685 LATFIGIVLIDRAGRKIL-LYVSDIAMVLTLFVLGGFFYCKTYGPDVSHLGWLPLTCFVI 743
Query: 359 YAASY-YGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVI 417
Y + G G +P +++ E+ P +R A+S A+ F +F+ TK +T ++G H
Sbjct: 744 YILGFSLGFGPIPWLMMGEILPAKIRGSAASVATAFNWFCTFVVTKTFQDLTVAMGAHGA 803
Query: 418 FFIYSSVHFCSVVFNYFYLMETKQKTLAEIQESIMNSHKQL 458
F+++ ++ F + F Y+ ET+ KTL +I+ +M +++
Sbjct: 804 FWLFGAICFVGLFFVIIYVPETQGKTLEDIERKMMGRVRRM 844
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 1.6.5.3 | LOW CONFIDENCE prediction! |
| 3rd Layer | 1.6.5 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 515 | |||
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 1e-42 | |
| TIGR00879 | 481 | TIGR00879, SP, MFS transporter, sugar porter (SP) | 2e-42 | |
| MTH00161 | 113 | MTH00161, ND3, NADH dehydrogenase subunit 3; Provi | 4e-18 | |
| pfam00507 | 102 | pfam00507, Oxidored_q4, NADH-ubiquinone/plastoquin | 2e-16 | |
| MTH00148 | 117 | MTH00148, ND3, NADH dehydrogenase subunit 3; Provi | 3e-16 | |
| MTH00202 | 117 | MTH00202, ND3, NADH dehydrogenase subunit 3; Provi | 3e-15 | |
| MTH00012 | 117 | MTH00012, ND3, NADH dehydrogenase subunit 3; Valid | 7e-15 | |
| MTH00042 | 116 | MTH00042, ND3, NADH dehydrogenase subunit 3; Valid | 4e-13 | |
| MTH00069 | 114 | MTH00069, ND3, NADH dehydrogenase subunit 3; Provi | 7e-13 | |
| MTH00136 | 116 | MTH00136, ND3, NADH dehydrogenase subunit 3; Provi | 1e-12 | |
| MTH00106 | 115 | MTH00106, ND3, NADH dehydrogenase subunit 3; Provi | 2e-12 | |
| PRK10077 | 479 | PRK10077, xylE, D-xylose transporter XylE; Provisi | 2e-12 | |
| MTH00203 | 112 | MTH00203, ND3, NADH dehydrogenase subunit 3; Provi | 4e-12 | |
| TIGR00898 | 505 | TIGR00898, 2A0119, cation transport protein | 6e-12 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 6e-12 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 1e-11 | |
| MTH00113 | 114 | MTH00113, ND3, NADH dehydrogenase subunit 3; Provi | 2e-11 | |
| MTH00018 | 113 | MTH00018, ND3, NADH dehydrogenase subunit 3; Valid | 5e-11 | |
| MTH00055 | 118 | MTH00055, ND3, NADH dehydrogenase subunit 3; Provi | 7e-11 | |
| PRK06602 | 121 | PRK06602, PRK06602, NADH:ubiquinone oxidoreductase | 3e-09 | |
| COG0838 | 123 | COG0838, NuoA, NADH:ubiquinone oxidoreductase subu | 3e-08 | |
| MTH00030 | 123 | MTH00030, ND3, NADH dehydrogenase subunit 3; Provi | 5e-08 | |
| MTH00092 | 111 | MTH00092, ND3, NADH dehydrogenase subunit 3; Provi | 4e-07 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 6e-06 | |
| PRK08489 | 129 | PRK08489, PRK08489, NADH dehydrogenase subunit A; | 1e-05 | |
| TIGR00880 | 141 | TIGR00880, 2_A_01_02, Multidrug resistance protein | 1e-04 | |
| PRK07928 | 119 | PRK07928, PRK07928, NADH dehydrogenase subunit A; | 6e-04 | |
| TIGR00886 | 366 | TIGR00886, 2A0108, nitrite extrusion protein (nitr | 8e-04 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 0.001 | |
| TIGR00883 | 394 | TIGR00883, 2A0106, metabolite-proton symporter | 0.002 | |
| COG2223 | 417 | COG2223, NarK, Nitrate/nitrite transporter [Inorga | 0.004 | |
| PRK07756 | 122 | PRK07756, PRK07756, NADH dehydrogenase subunit A; | 0.004 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 157 bits (399), Expect = 1e-42
Identities = 110/407 (27%), Positives = 196/407 (48%), Gaps = 20/407 (4%)
Query: 57 QLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALLCLPTWFL---VVSNKIECLYI 113
+VS+ +G I +FAG L ++ GRK +LL+ +L + L L +
Sbjct: 47 LSGLIVSIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIV 106
Query: 114 ARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTL---AILLIGNHVSYN 170
R+ +G+ G +P++I EI+ +RGALGS+ G L I L N S +
Sbjct: 107 GRVIVGLGVGGISVLVPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNS 166
Query: 171 S---LNIALSILPVIFFILFS-FVPETPHFHAAKNNLKKTEKSLKWYRGN---KKDVMEE 223
+ + L +P I ++ F+PE+P + K L++ L RG +++ EE
Sbjct: 167 DGWRIPLGLQFVPAILLLIGLLFLPESPRWLVLKGKLEEARAVLAKLRGVSDVDQEIQEE 226
Query: 224 MNSIMDKTQEDLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKL 283
+S+ + K +LEL K+ R+ + + +FQ+L GI ++ YS T+ L
Sbjct: 227 KDSLE---RSVEAEKASWLELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFETL 283
Query: 284 DNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQG 343
+ ++ ++ F+ F+ L+D GR+PL AA + G+ L
Sbjct: 284 GLSD--SLLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVALLGVA 341
Query: 344 ELPNFQYIPYITTLLYAASY-YGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITT 402
+ + + LL+ A + G G +P ++VSELFP+ VR +A + A+ A +F+
Sbjct: 342 KSKGAGIVAIVFILLFIAFFALGWGPVPWVIVSELFPLGVRPKAMAIATAANWLANFLIG 401
Query: 403 KFHILITKSLGQHVIFFIYSSVHFCSVVFNYFYLMETKQKTLAEIQE 449
+IT ++G +V F +++ + ++F +F++ ETK +TL EI E
Sbjct: 402 FLFPIITGAIGGYV-FLVFAGLLVLFILFVFFFVPETKGRTLEEIDE 447
|
Length = 449 |
| >gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Score = 157 bits (398), Expect = 2e-42
Identities = 111/414 (26%), Positives = 193/414 (46%), Gaps = 27/414 (6%)
Query: 57 QLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALL-----CLPTWFLVVSNKIECL 111
+VS+ +G I +FAG L ++ GRK +LL+ ALL L + +E L
Sbjct: 72 LWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALS-VEML 130
Query: 112 YIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTL--AILLIGNHVSY 169
+ R+ +GI G+A +P+++ EI+ +RGAL S+ G L G
Sbjct: 131 IVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLN 190
Query: 170 NSLN----IALSILP-VIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNK---KDVM 221
N+L + L ++P + F+ F+PE+P + K +++ KSL RG K+++
Sbjct: 191 NTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELL 250
Query: 222 EEMNSIM-DKTQEDLKSKTGYLELLTNKSN-RRAFTLVMAASLFQRLGGITSMITYSSTL 279
+E+ I ++ E + + L ++ RR L + FQ+ GI +++ YS T+
Sbjct: 251 DELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTI 310
Query: 280 LPKLDNAYFGPDQCIL---VFMIIMFLSNFLQAPLMDILGRKP--LSCFSAALGCLLTFS 334
+NA D L + + F F+ L+D GR+P L + CL
Sbjct: 311 F---ENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLG 367
Query: 335 TGLFYLYQGELPNFQYIPYITTLLYAASY-YGIGCLPNILVSELFPINVRCQASSCASVA 393
G + + + LL+ A + G G +P ++VSE+FP+++R + S A A
Sbjct: 368 ILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAA 427
Query: 394 LAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFNYFYLMETKQKTLAEI 447
+FI + +S+G +F + ++ ++F YF+L ETK +TL EI
Sbjct: 428 NWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEEI 481
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481 |
| >gnl|CDD|177217 MTH00161, ND3, NADH dehydrogenase subunit 3; Provisional | Back alignment and domain information |
|---|
Score = 79.4 bits (197), Expect = 4e-18
Identities = 32/58 (55%), Positives = 42/58 (72%)
Query: 450 SIMNSHKQLRREKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSPLI 507
S+++ + REK+SPFECGFDP S R+ +SL FF IA+IFLIFD+EI L+ P I
Sbjct: 21 SLLSKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFI 78
|
Length = 113 |
| >gnl|CDD|215958 pfam00507, Oxidored_q4, NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 | Back alignment and domain information |
|---|
Score = 74.9 bits (185), Expect = 2e-16
Identities = 29/58 (50%), Positives = 42/58 (72%)
Query: 450 SIMNSHKQLRREKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSPLI 507
+++ K REK SP+ECGFDP+ K R+ +SL FF IA++FLIFD+EI L+ P ++
Sbjct: 11 FLLSPKKPSDREKLSPYECGFDPLGKARLPFSLRFFLIAILFLIFDVEIILLLPWAVV 68
|
Length = 102 |
| >gnl|CDD|214433 MTH00148, ND3, NADH dehydrogenase subunit 3; Provisional | Back alignment and domain information |
|---|
Score = 74.1 bits (183), Expect = 3e-16
Identities = 29/44 (65%), Positives = 37/44 (84%)
Query: 460 REKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFP 503
REK+SPFECGFDPIS R +SL FF +A++FL+FD+EI L+FP
Sbjct: 33 REKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFP 76
|
Length = 117 |
| >gnl|CDD|214455 MTH00202, ND3, NADH dehydrogenase subunit 3; Provisional | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 3e-15
Identities = 29/48 (60%), Positives = 38/48 (79%)
Query: 460 REKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSPLI 507
REK+SPFECGFDP R+ +S+ FF +A+IFL+FDIEI L+ P PL+
Sbjct: 33 REKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLV 80
|
Length = 117 |
| >gnl|CDD|164588 MTH00012, ND3, NADH dehydrogenase subunit 3; Validated | Back alignment and domain information |
|---|
Score = 70.7 bits (173), Expect = 7e-15
Identities = 31/48 (64%), Positives = 37/48 (77%)
Query: 460 REKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSPLI 507
REKTSPFECGFDP RI +SL FF +A+IF++FDIEI L+ P P I
Sbjct: 33 REKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPTI 80
|
Length = 117 |
| >gnl|CDD|177117 MTH00042, ND3, NADH dehydrogenase subunit 3; Validated | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 4e-13
Identities = 25/46 (54%), Positives = 37/46 (80%)
Query: 461 EKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSPL 506
EK+SP+ECGFDP++ R+ +S FF +A++FL+FD+EI L+FP P
Sbjct: 33 EKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPP 78
|
Length = 116 |
| >gnl|CDD|177141 MTH00069, ND3, NADH dehydrogenase subunit 3; Provisional | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 7e-13
Identities = 24/45 (53%), Positives = 36/45 (80%)
Query: 461 EKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSP 505
EK SP+ECGFDP+ R+ +S+ FF +A++FL+FD+EI L+ P+P
Sbjct: 31 EKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPTP 75
|
Length = 114 |
| >gnl|CDD|177194 MTH00136, ND3, NADH dehydrogenase subunit 3; Provisional | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 1e-12
Identities = 25/45 (55%), Positives = 35/45 (77%)
Query: 461 EKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSP 505
EK SP+ECGFDP+ R+ +SL FF +A++FL+FD+EI L+ P P
Sbjct: 33 EKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLP 77
|
Length = 116 |
| >gnl|CDD|177168 MTH00106, ND3, NADH dehydrogenase subunit 3; Provisional | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 2e-12
Identities = 24/45 (53%), Positives = 34/45 (75%)
Query: 461 EKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSP 505
EK SP+ECGFDP+ R+ +S+ FF +A+ FL+FD+EI L+ P P
Sbjct: 32 EKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLP 76
|
Length = 115 |
| >gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 2e-12
Identities = 104/429 (24%), Positives = 177/429 (41%), Gaps = 70/429 (16%)
Query: 67 LGNAISPIFAGILVEKIGRKTTLLLNALLCL--------PTWFLVVSNKIECLY-----I 113
+G I G + GR+ +L + A+L P + Y I
Sbjct: 66 IGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVI 125
Query: 114 ARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAI----LLIGNHVSY 169
R+ GI G+A P++I EI+ +IRG L S + G L + I
Sbjct: 126 YRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDA 185
Query: 170 NSLN-------IALSILP-VIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNK--KD 219
+ LN A +P ++F +L FVPETP + ++ ++ E L+ GN
Sbjct: 186 SWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLATQ 245
Query: 220 VMEEMNSIMDKTQEDLKSKTGYLELLTNKSNRRAFTLV--MAASLFQRLGGITSMITYSS 277
++E+ +D ++ G +LL +V + S+FQ+ GI ++ Y+
Sbjct: 246 ALQEIKHSLDHGRK----TGG--KLLMFG----VGVIVIGVMLSVFQQFVGINVVLYYAP 295
Query: 278 TLLPKL----DNAYFGPDQCILVFMIIMFLSNFLQAPL----MDILGRKPLSCFSAALGC 329
+ L D A L+ II+ + N L +D GRKPL A
Sbjct: 296 EIFKTLGASTDIA--------LLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMA 347
Query: 330 LLTFSTGLFYLYQGELPNFQYIPYITTLLYAASY---YGIGCLPNILVSELFPINVRCQA 386
+ FS G + Q + ++ L Y A++ +G C +L+SE+FP +R +A
Sbjct: 348 IGMFSLGTAFYTQAP----GIVALLSMLFYVAAFAMSWGPVCW--VLLSEIFPNAIRGKA 401
Query: 387 SSCASVA-LAFGSFITTKFHILITKS-LGQH----VIFFIYSSVHFCSVVFNYFYLMETK 440
+ A A F++ F ++ S L H ++IY + + +F + ++ ETK
Sbjct: 402 LAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETK 461
Query: 441 QKTLAEIQE 449
KTL E++
Sbjct: 462 GKTLEEMEA 470
|
Length = 479 |
| >gnl|CDD|214456 MTH00203, ND3, NADH dehydrogenase subunit 3; Provisional | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 4e-12
Identities = 26/46 (56%), Positives = 34/46 (73%)
Query: 461 EKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSPL 506
EK SP+ECGFDP+ R+ +SL FF +AL FL+FD+EI L+ P P
Sbjct: 33 EKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPW 78
|
Length = 112 |
| >gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 6e-12
Identities = 87/401 (21%), Positives = 156/401 (38%), Gaps = 35/401 (8%)
Query: 59 SWMV----SLLDLGNAISPIFAGILVEKIGRKTTLLLNAL-LCLPTWFLVVSNKIECLYI 113
+W V S +G + G L ++ GRK LLL+ L + S +
Sbjct: 126 AWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLV 185
Query: 114 ARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHV-SYNSL 172
RL +G+ G + + E R +G++ F +G + + L+ + + L
Sbjct: 186 FRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPDWRWL 245
Query: 173 NIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYR--GNKKDVMEEMNSIMDK 230
+A+S+ +FF+L FVPE+P + ++ +++ K L+ KK E ++ ++K
Sbjct: 246 QLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEK 305
Query: 231 TQEDLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTL-LPKLD-NAYF 288
K + +L+L + R+ +M T+ Y L L L N Y
Sbjct: 306 DLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWF------TTAFSYYGLVLDLGNLGGNIYL 359
Query: 289 GPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNF 348
D + ++ + + L+D LGR+ S L G+ L +P
Sbjct: 360 --DL--FISGLVELPAKLITLLLIDRLGRRYTMAASLLLA-------GVALLLLLFVP-- 406
Query: 349 QYIPYITTLLYAASYYGIGCLPNIL---VSELFPINVRCQASSCASVALAFGSFITTKFH 405
+ ++ T L +GI ++ +EL+P VR S GS I+
Sbjct: 407 VDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLV 466
Query: 406 ILITKSLGQHVIFFIYSSVHFCSVVFNYFYLMETKQKTLAE 446
L K L + ++ + + + F L ETK L E
Sbjct: 467 YLGEKWL--FLPLVLFGGLALLAGILTLF-LPETKGVPLPE 504
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 6e-12
Identities = 67/350 (19%), Positives = 123/350 (35%), Gaps = 44/350 (12%)
Query: 57 QLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLL-NALLCLPTWFLVVSNKIECLYIAR 115
++ +++ LG A++ AG L ++ GR+ LL+ L L L+ ++ + L + R
Sbjct: 33 EIGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLR 92
Query: 116 LFIGISKGVAYTAMPIFIGEISEHNIRG-ALGSIPSGFQ---MVGTLAILLIGNHVSYNS 171
+ G+ G + A I + RG ALG + +GF +G L L+ + + +
Sbjct: 93 VLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLASLFGWRA 152
Query: 172 LNIALSILPVIFFILFS-FVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDK 230
+ L+IL ++ +L + +P P ++ L
Sbjct: 153 AFLILAILALLAAVLAALLLPRPPPESKRPKPAEEAPAPL-------------------- 192
Query: 231 TQEDLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGP 290
+ L++A LF + L G
Sbjct: 193 -----------VPAWKLLLRDPVLWLLLALLLFGFAFFALLTYLPLYQEVLGLSALLAG- 240
Query: 291 DQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQY 350
+ + ++ + L L D LGR+ AL L+ + GL L E +
Sbjct: 241 -LLLGLAGLLGAIGRLLLGRLSDRLGRRRR--LLLALLLLILAALGLALLSLTESSLWLL 297
Query: 351 IPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFI 400
+ + L + N LVS+L P R AS + A + G +
Sbjct: 298 VALL---LLGFGAGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGAL 344
|
Length = 346 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 1e-11
Identities = 40/144 (27%), Positives = 65/144 (45%), Gaps = 5/144 (3%)
Query: 53 LNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALLC-LPTWFLVVSNKIECL 111
L+ Q +VS LG A+ + AG L ++ GR+ LLL LL L + L ++ + L
Sbjct: 31 LSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLL 90
Query: 112 YIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIG----NHV 167
+ R +G+ G Y A I E RG + S +G L L+G +
Sbjct: 91 LVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESL 150
Query: 168 SYNSLNIALSILPVIFFILFSFVP 191
+ L + L+IL ++ +L F+
Sbjct: 151 GWRWLFLILAILGLLLALLLLFLL 174
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|177175 MTH00113, ND3, NADH dehydrogenase subunit 3; Provisional | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 2e-11
Identities = 24/45 (53%), Positives = 35/45 (77%)
Query: 461 EKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSP 505
EK SP+ECGFDP+ R+ +S+ FF +A++FL+FD+EI L+ P P
Sbjct: 32 EKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLP 76
|
Length = 114 |
| >gnl|CDD|164592 MTH00018, ND3, NADH dehydrogenase subunit 3; Validated | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 5e-11
Identities = 27/54 (50%), Positives = 35/54 (64%)
Query: 450 SIMNSHKQLRREKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFP 503
S KQ REK S +ECGFDP P +S+ FF I ++FLIFD+EI+ +FP
Sbjct: 21 SYFLGVKQPDREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFLFP 74
|
Length = 113 |
| >gnl|CDD|177128 MTH00055, ND3, NADH dehydrogenase subunit 3; Provisional | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 7e-11
Identities = 26/56 (46%), Positives = 38/56 (67%)
Query: 456 KQLRREKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSPLIKQKI 511
KQ EK S +ECGFDP RI +S+ FF + ++FLIFD+EI+ +FP ++ +I
Sbjct: 32 KQPDSEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLFPWCVVYNQI 87
|
Length = 118 |
| >gnl|CDD|180638 PRK06602, PRK06602, NADH:ubiquinone oxidoreductase subunit A; Validated | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 3e-09
Identities = 18/44 (40%), Positives = 30/44 (68%)
Query: 460 REKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFP 503
REK SP+E GF+ R+ + + F+ +A++F+IFD+E +FP
Sbjct: 39 REKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFLFP 82
|
Length = 121 |
| >gnl|CDD|223908 COG0838, NuoA, NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 3e-08
Identities = 17/44 (38%), Positives = 31/44 (70%)
Query: 460 REKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFP 503
EK SP+ECG P R+ +S+ ++ +A++F++FD+E+ +FP
Sbjct: 39 PEKLSPYECGNPPFGGARLRFSVQYYLVAILFVVFDVEVVFLFP 82
|
Length = 123 |
| >gnl|CDD|164603 MTH00030, ND3, NADH dehydrogenase subunit 3; Provisional | Back alignment and domain information |
|---|
Score = 51.5 bits (123), Expect = 5e-08
Identities = 21/47 (44%), Positives = 34/47 (72%)
Query: 461 EKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSPLI 507
EK+S +ECGFDP K R +++ F + ++F+IFDIEI+ +FP ++
Sbjct: 42 EKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFLFPWSIV 88
|
Length = 123 |
| >gnl|CDD|177155 MTH00092, ND3, NADH dehydrogenase subunit 3; Provisional | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 4e-07
Identities = 21/37 (56%), Positives = 29/37 (78%)
Query: 462 KTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEI 498
K S FECGF+ + K + S+S+HFF I L+F+IFD+EI
Sbjct: 34 KVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEI 70
|
Length = 111 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 6e-06
Identities = 34/141 (24%), Positives = 65/141 (46%), Gaps = 6/141 (4%)
Query: 57 QLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALL--CLPTWFLVVSNKIECLYIA 114
+ ++SL LG + + G+L +++GR+ LLL LL L L ++ + L +A
Sbjct: 212 EAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVA 271
Query: 115 RLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQ----MVGTLAILLIGNHVSYN 170
L +G G A+ A+ E++ RG + + F +G L L+ + Y
Sbjct: 272 LLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYG 331
Query: 171 SLNIALSILPVIFFILFSFVP 191
+ + L+ L ++ +L +P
Sbjct: 332 GVFLILAALALLAALLLLLLP 352
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|181448 PRK08489, PRK08489, NADH dehydrogenase subunit A; Validated | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 1e-05
Identities = 20/43 (46%), Positives = 32/43 (74%), Gaps = 3/43 (6%)
Query: 462 KTSPFECGFDPISKP-RISYSLHFFSIALIFLIFDIEITLIFP 503
K + +ECG +P+ +P RIS HF+ +AL+F++FD+EI +FP
Sbjct: 47 KLAIYECGPEPVKQPNRIS--SHFYIMALLFILFDVEIVFMFP 87
|
Length = 129 |
| >gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 1e-04
Identities = 39/141 (27%), Positives = 62/141 (43%), Gaps = 6/141 (4%)
Query: 59 SWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALLC-LPTWFLVVSNKIECLYIARLF 117
+++ LG I +G+L ++ GRK LL+ + L T +S+ I L IAR
Sbjct: 1 GLLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFL 60
Query: 118 IGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHV----SYNSLN 173
G A A I +I RG + S +G L +G + + +
Sbjct: 61 QGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPF 120
Query: 174 IALSILPVIFFILFSFV-PET 193
+ L+IL + FIL +F+ PET
Sbjct: 121 LFLAILALAAFILLAFLLPET 141
|
Length = 141 |
| >gnl|CDD|181171 PRK07928, PRK07928, NADH dehydrogenase subunit A; Validated | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 6e-04
Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 456 KQLRREKTSPFECGFDPISKPRIS--YSLHFFSIALIFLIFDIEITLIFP 503
K+ R K +ECG +P +P + + ++ A++F++FDIEI ++P
Sbjct: 31 KRYNRAKLEAYECGIEPTPQPAGGGRFPVKYYLTAMLFIVFDIEIVFLYP 80
|
Length = 119 |
| >gnl|CDD|233170 TIGR00886, 2A0108, nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 8e-04
Identities = 45/185 (24%), Positives = 74/185 (40%), Gaps = 27/185 (14%)
Query: 28 WIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIG-RK 86
W A+ + ++ + D + L+ QL +V++ L A+ I G LV+K G R
Sbjct: 17 WFAFSPLAVQMIKD--------DLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRY 68
Query: 87 TTLLLNALLCLPT-WFLVVSNKIECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRG-- 143
TT L LL +P W + L + RLFIGI+ G + MP +I I+G
Sbjct: 69 TTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIAGGSFASCMP-WISFFFPKKIQGTA 127
Query: 144 -----ALGSIPSGF-QMVGTLAILLIGNHVSYN-------SLNIALSILP-VIFFILFSF 189
G++ G Q V I + + I + + + ++F
Sbjct: 128 LGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFV 187
Query: 190 VPETP 194
+TP
Sbjct: 188 GADTP 192
|
[Transport and binding proteins, Anions]. Length = 366 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.001
Identities = 37/180 (20%), Positives = 61/180 (33%), Gaps = 12/180 (6%)
Query: 255 TLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQ---CILVFMIIMFLSNFLQAPL 311
L++A + F G ++TY L + + + +F + L L L
Sbjct: 177 LLLLALAFFLLSFGYYGLLTYLPLYL--QEVLGLSAAEAGLLLSLFGLGGILGALLGGLL 234
Query: 312 MDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPN 371
D LGR+ L L L GL L L + + LL
Sbjct: 235 SDRLGRRRLLLLIGLLLAAL----GLLLLA---LAPSLALLLVALLLLGFGLGFAFPALL 287
Query: 372 ILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSVVF 431
L SEL P R AS + + G + L+ + G +F I +++ + +
Sbjct: 288 TLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALL 347
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.002
Identities = 79/370 (21%), Positives = 121/370 (32%), Gaps = 99/370 (26%)
Query: 74 IFAGILVEKIGRKTTLLLNALL---------CLPT------WFLVVSNKIECLYIARLFI 118
I G ++IGRK TL++ L+ LP+ W ++ L +ARL
Sbjct: 53 IVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPIL------LLLARLIQ 106
Query: 119 GISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHVSYNSLNIALS- 177
G S G + +++ E + RG GS VG L L +SY + AL
Sbjct: 107 GFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLE 166
Query: 178 -----------ILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNS 226
+L +I L + ETP F A+ KK +
Sbjct: 167 WGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQEKHKKKRGPIA--------------- 211
Query: 227 IMDKTQEDLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITS---MITYSSTLLPKL 283
E LT +R+ F L + + T+ + TY T L +
Sbjct: 212 ----------------ETLTK--HRKPFLLGL----GLVIATTTTFYLITTYLPTYLTQ- 248
Query: 284 DNAYFGPDQCILVFMIIMFLSNFLQ---APLMDILGRKPLSCFSAALGCLLTFSTGLFYL 340
+ +LV M+ + L L D +GR+P+ L+ F+ L
Sbjct: 249 -TLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPV---------LIIFTVLAALL 298
Query: 341 YQGELPNFQYIPYITTLLYA--------ASYYGIGCLPNILVSELFPINVRCQASSCA-S 391
L T + Y G + ELFP VR +S A +
Sbjct: 299 AVPLLMALLDSGSFTLFFFLVLGMALIGGMYTGP---MGSFLPELFPTEVRYTGASLAYN 355
Query: 392 VALAFGSFIT 401
+A A
Sbjct: 356 LAGAIFGGFA 365
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394 |
| >gnl|CDD|225133 COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.004
Identities = 34/202 (16%), Positives = 70/202 (34%), Gaps = 22/202 (10%)
Query: 18 ASISLLIAGC-WIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFA 76
++++ + W + + + L++ Q +V++ L A+ +
Sbjct: 19 STLAFDVGFMVWTLFSPLGV---------FIKSDFGLSEGQKGLLVAIPILVGALLRLPY 69
Query: 77 GILVEKIG-RKTTLLLNALLCLPTW---FLVVSNKIECLYIARLFIGISKGVAYTAMPIF 132
G L ++ G RK T+L LL +P F V L + L +G++ MP
Sbjct: 70 GFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGASFAVGMP-N 128
Query: 133 IGEISEHNIRG------ALGSIPSGF-QMVGTLAILLIGNHVSYNSLNIALSILPVIFFI 185
+G G++ Q+V L + G N I + L + +
Sbjct: 129 ASFFFPKEKQGLALGIAGAGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVL 188
Query: 186 LFSFVPETPHFHAAKNNLKKTE 207
+ + + P A+ +
Sbjct: 189 AWLGMNDVPEHRASVKPQLPAQ 210
|
Length = 417 |
| >gnl|CDD|169084 PRK07756, PRK07756, NADH dehydrogenase subunit A; Validated | Back alignment and domain information |
|---|
Score = 37.0 bits (86), Expect = 0.004
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 460 REKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFP 503
K + +E G +P I + ++ AL+F+IFD+E ++P
Sbjct: 40 AAKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLYP 83
|
Length = 122 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 515 | |||
| KOG0569|consensus | 485 | 100.0 | ||
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 100.0 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 100.0 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 100.0 | |
| KOG0254|consensus | 513 | 100.0 | ||
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 100.0 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 100.0 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 100.0 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 100.0 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 100.0 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 100.0 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 100.0 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 100.0 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 100.0 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 100.0 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 100.0 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 100.0 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 100.0 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 100.0 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 100.0 | |
| KOG0253|consensus | 528 | 100.0 | ||
| KOG0252|consensus | 538 | 100.0 | ||
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 100.0 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 100.0 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 100.0 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 100.0 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 100.0 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 100.0 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 100.0 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 100.0 | |
| PRK03699 | 394 | putative transporter; Provisional | 100.0 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 100.0 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 100.0 | |
| PRK12382 | 392 | putative transporter; Provisional | 100.0 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 100.0 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 100.0 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 100.0 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 100.0 | |
| KOG0255|consensus | 521 | 100.0 | ||
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 100.0 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 100.0 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 100.0 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 100.0 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 100.0 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.98 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.98 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.98 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.98 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.97 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.97 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.97 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.97 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.97 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.97 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.97 | |
| KOG2533|consensus | 495 | 99.97 | ||
| KOG2532|consensus | 466 | 99.97 | ||
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.97 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.97 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.97 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.97 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.97 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.97 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.97 | |
| KOG1330|consensus | 493 | 99.97 | ||
| PRK10054 | 395 | putative transporter; Provisional | 99.97 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.97 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.97 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.97 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.96 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.96 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.96 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.96 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.96 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.96 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.96 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.96 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.95 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.95 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.95 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.95 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.95 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.94 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.94 | |
| KOG2504|consensus | 509 | 99.94 | ||
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.94 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.94 | |
| KOG2615|consensus | 451 | 99.93 | ||
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.93 | |
| KOG3764|consensus | 464 | 99.93 | ||
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.93 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.93 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.93 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.93 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.93 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.92 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.9 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.89 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.89 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.89 | |
| KOG4686|consensus | 459 | 99.88 | ||
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.87 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.87 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.87 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.87 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.85 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.84 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.83 | |
| KOG2563|consensus | 480 | 99.81 | ||
| PRK11462 | 460 | putative transporter; Provisional | 99.8 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.79 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.78 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.78 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.76 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.74 | |
| KOG2325|consensus | 488 | 99.74 | ||
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.68 | |
| KOG3626|consensus | 735 | 99.62 | ||
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.62 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.62 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.59 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.58 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.57 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.55 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.53 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.53 | |
| KOG2816|consensus | 463 | 99.51 | ||
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.5 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.5 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.49 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.49 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.48 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.48 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.47 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.47 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.47 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.47 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.45 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.45 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.44 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.43 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.43 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.42 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.42 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 99.41 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.39 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.39 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.39 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.39 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.39 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.38 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.38 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.38 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.38 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.37 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.37 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.37 | |
| KOG3762|consensus | 618 | 99.37 | ||
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.37 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.36 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.36 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.35 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.35 | |
| KOG1330|consensus | 493 | 99.34 | ||
| PRK03699 | 394 | putative transporter; Provisional | 99.33 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.33 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.33 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.32 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.32 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.31 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.3 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.3 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.29 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.29 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.29 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.29 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.28 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.28 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.28 | |
| KOG2615|consensus | 451 | 99.27 | ||
| PRK12382 | 392 | putative transporter; Provisional | 99.27 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.27 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.27 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.25 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.24 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.22 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.22 | |
| KOG3098|consensus | 461 | 99.22 | ||
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.22 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.21 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.21 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.2 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.18 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.17 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.16 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.16 | |
| KOG3764|consensus | 464 | 99.15 | ||
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.14 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.14 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.12 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.11 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.11 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.11 | |
| KOG2532|consensus | 466 | 99.09 | ||
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.09 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.08 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.08 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.08 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.07 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.01 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.0 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 99.0 | |
| KOG0252|consensus | 538 | 98.98 | ||
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 98.98 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 98.94 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 98.94 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 98.93 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 98.93 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.93 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 98.93 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.9 | |
| KOG0255|consensus | 521 | 98.88 | ||
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.86 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 98.86 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 98.86 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.84 | |
| KOG4332|consensus | 454 | 98.83 | ||
| KOG2533|consensus | 495 | 98.83 | ||
| KOG0569|consensus | 485 | 98.81 | ||
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 98.79 | |
| KOG0254|consensus | 513 | 98.78 | ||
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.77 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 98.75 | |
| KOG2504|consensus | 509 | 98.74 | ||
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.68 | |
| KOG0637|consensus | 498 | 98.67 | ||
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 98.63 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.59 | |
| KOG0253|consensus | 528 | 98.58 | ||
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.58 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.55 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.5 | |
| KOG3810|consensus | 433 | 98.48 | ||
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.48 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.48 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.42 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.41 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.37 | |
| KOG2325|consensus | 488 | 98.35 | ||
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.34 | |
| KOG2816|consensus | 463 | 98.33 | ||
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.3 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.3 | |
| KOG4662|consensus | 122 | 98.27 | ||
| KOG3574|consensus | 510 | 98.27 | ||
| PRK06432 | 144 | NADH dehydrogenase subunit A; Validated | 98.21 | |
| MTH00113 | 114 | ND3 NADH dehydrogenase subunit 3; Provisional | 98.2 | |
| KOG4686|consensus | 459 | 98.2 | ||
| MTH00069 | 114 | ND3 NADH dehydrogenase subunit 3; Provisional | 98.19 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 98.18 | |
| CHL00022 | 120 | ndhC NADH dehydrogenase subunit 3 | 98.17 | |
| MTH00092 | 111 | ND3 NADH dehydrogenase subunit 3; Provisional | 98.16 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 98.15 | |
| MTH00203 | 112 | ND3 NADH dehydrogenase subunit 3; Provisional | 98.15 | |
| MTH00148 | 117 | ND3 NADH dehydrogenase subunit 3; Provisional | 98.14 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.13 | |
| MTH00202 | 117 | ND3 NADH dehydrogenase subunit 3; Provisional | 98.12 | |
| MTH00136 | 116 | ND3 NADH dehydrogenase subunit 3; Provisional | 98.12 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 98.1 | |
| MTH00042 | 116 | ND3 NADH dehydrogenase subunit 3; Validated | 98.1 | |
| PRK06602 | 121 | NADH:ubiquinone oxidoreductase subunit A; Validate | 98.09 | |
| MTH00055 | 118 | ND3 NADH dehydrogenase subunit 3; Provisional | 98.09 | |
| MTH00030 | 123 | ND3 NADH dehydrogenase subunit 3; Provisional | 98.08 | |
| PRK07756 | 122 | NADH dehydrogenase subunit A; Validated | 98.07 | |
| MTH00012 | 117 | ND3 NADH dehydrogenase subunit 3; Validated | 98.06 | |
| PRK07928 | 119 | NADH dehydrogenase subunit A; Validated | 98.03 | |
| MTH00018 | 113 | ND3 NADH dehydrogenase subunit 3; Validated | 98.02 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.02 | |
| MTH00106 | 115 | ND3 NADH dehydrogenase subunit 3; Provisional | 98.02 | |
| MTH00161 | 113 | ND3 NADH dehydrogenase subunit 3; Provisional | 97.96 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 97.92 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 97.92 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 97.89 | |
| KOG3762|consensus | 618 | 97.88 | ||
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 97.88 | |
| MTH00060 | 116 | ND3 NADH dehydrogenase subunit 3; Provisional | 97.87 | |
| PRK06073 | 124 | NADH dehydrogenase subunit A; Validated | 97.85 | |
| PF00507 | 102 | Oxidored_q4: NADH-ubiquinone/plastoquinone oxidore | 97.76 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.7 | |
| KOG1237|consensus | 571 | 97.69 | ||
| COG0838 | 123 | NuoA NADH:ubiquinone oxidoreductase subunit 3 (cha | 97.66 | |
| PRK08489 | 129 | NADH dehydrogenase subunit A; Validated | 97.65 | |
| KOG1479|consensus | 406 | 97.61 | ||
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.59 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 97.47 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 97.43 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 97.42 | |
| KOG2563|consensus | 480 | 97.39 | ||
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.33 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 97.29 | |
| KOG3626|consensus | 735 | 97.15 | ||
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 97.11 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 96.94 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 96.78 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 96.49 | |
| KOG0637|consensus | 498 | 96.48 | ||
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 96.44 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 96.39 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 96.31 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 96.15 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 96.14 | |
| KOG3098|consensus | 461 | 95.88 | ||
| PRK03612 | 521 | spermidine synthase; Provisional | 95.76 | |
| KOG1479|consensus | 406 | 95.72 | ||
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 95.4 | |
| KOG3880|consensus | 409 | 94.2 | ||
| KOG1237|consensus | 571 | 93.74 | ||
| KOG4332|consensus | 454 | 93.6 | ||
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 93.34 | |
| KOG3097|consensus | 390 | 92.89 | ||
| KOG3574|consensus | 510 | 88.17 | ||
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 87.58 | |
| PF03547 | 385 | Mem_trans: Membrane transport protein; InterPro: I | 80.09 |
| >KOG0569|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-46 Score=363.72 Aligned_cols=446 Identities=25% Similarity=0.376 Sum_probs=377.3
Q ss_pred cchhHHHHHHHHHHHHHHhhhhhccchhhhhhcccCCC-Cc-ccccccccchhhH----HHHHHHHHHHhhhhhhhHhhh
Q psy15227 6 RSYVYQIIATNTASISLLIAGCWIAWPSVMIKRLTDEN-PD-LENIGIRLNKYQL----SWMVSLLDLGNAISPIFAGIL 79 (515)
Q Consensus 6 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~-~~-~~~~~~~~s~~~~----~~~~s~~~lg~~i~~~~~G~l 79 (515)
+.+++........+++.+-.|++.+.+++..+.+.+-. +. .+++|...++.+. +.+.+++.+|.++|++..|++
T Consensus 4 ~~t~~L~~~~~~~~~gsf~~Gy~~~~iNap~~~i~~f~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~l 83 (485)
T KOG0569|consen 4 KLTRRLLLAVIVATLGSFQFGYNIGVVNAPQELIKSFINETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLL 83 (485)
T ss_pred CccHHHHHHHHHHHHhchhhhhhheecCchHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666677777888999988888766554310 11 1233434555444 677889999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHhh----hhhHHHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhhhH
Q psy15227 80 VEKIGRKTTLLLNALLCLPTWFLVVSN----KIECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMV 155 (515)
Q Consensus 80 ~Dr~Grr~~l~~~~~l~~i~~~~~~~~----~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~l 155 (515)
+||+|||..+.++.++..++.++..++ ++.+++++|++.|+.+|......+.++.|..|++.||......+.+..+
T Consensus 84 a~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~ 163 (485)
T KOG0569|consen 84 ADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVI 163 (485)
T ss_pred HHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHH
Confidence 999999999999999998888888776 8899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhH------HHhHHHHHhhhHHHHHHHHHhhcccCcchhhhh-cCChhHHHHHHHhhcCCCcChHHHHH--H
Q psy15227 156 GTLAILLIGNH------VSYNSLNIALSILPVIFFILFSFVPETPHFHAA-KNNLKKTEKSLKWYRGNKKDVMEEMN--S 226 (515)
Q Consensus 156 G~~~~~~l~~~------l~wr~~f~i~~~~~~~~~~~~~~~pesp~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 226 (515)
|..++..++.. -.|++.+....+++++.++...++||||||+.. +++.++|++.++++++.+++.++..+ +
T Consensus 164 g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~ 243 (485)
T KOG0569|consen 164 GILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLR 243 (485)
T ss_pred HHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHH
Confidence 99999776632 269999999999999999999999999999988 89999999999999998764332222 2
Q ss_pred HHHHhhhhhhchhhhhhhhccccchhHHHHHHHHHHHHHhhchHHHHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHH
Q psy15227 227 IMDKTQEDLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNF 306 (515)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 306 (515)
..++.+.+++++.+++++++++..++...+.+.+...+++.+.+...+|...++.+.|++..++.......+...++.++
T Consensus 244 e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~ 323 (485)
T KOG0569|consen 244 EIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTL 323 (485)
T ss_pred HHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 22222223336678999999999999999999999999999999999999999999999988999999999999999999
Q ss_pred HHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCC-CCccHHHHHHHHHHHHH-hcccchhhhhhcccccchhhh
Q psy15227 307 LQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELP-NFQYIPYITTLLYAASY-YGIGCLPNILVSELFPINVRC 384 (515)
Q Consensus 307 ~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~p~~~r~ 384 (515)
++.++.||.|||++++.+..++.+..+++........... ...+..+++.+++.+.+ .+..|+.+-+.+|++|++.|+
T Consensus 324 ~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~ 403 (485)
T KOG0569|consen 324 VSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARS 403 (485)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchH
Confidence 9999999999999999999998888887776655443221 11223466777888888 889999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHh
Q psy15227 385 QASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFNYFYLMETKQKTLAEIQESIM 452 (515)
Q Consensus 385 ~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (515)
.+++.....+++..++....+..+.+..|. ..|+.+.+.+.+..+..++.+||||+|+..|+.++.+
T Consensus 404 aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~ 470 (485)
T KOG0569|consen 404 AAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELE 470 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHH
Confidence 999999999999999999999999999998 6899999999999999999999999999999988776
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-42 Score=349.55 Aligned_cols=429 Identities=17% Similarity=0.165 Sum_probs=311.5
Q ss_pred cchhHHHHHHHHHHHHHHhhhhhccchhhhhhcccCCC--CcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhh
Q psy15227 6 RSYVYQIIATNTASISLLIAGCWIAWPSVMIKRLTDEN--PDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKI 83 (515)
Q Consensus 6 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~ 83 (515)
+-.++++.++.++.++.+.+++|.+..+.++|.+..+. ++.+ .+..+.+++.+.+.++..++++++|+++||+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~ 83 (502)
T TIGR00887 9 PFGWQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGP-----LPSSVSAAVNGSASIGTLAGQLFFGWLADKL 83 (502)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34667888888999999999999999999988765421 1123 6677889999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhh-h------hhHHHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhhhHH
Q psy15227 84 GRKTTLLLNALLCLPTWFLVVSN-K------IECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVG 156 (515)
Q Consensus 84 Grr~~l~~~~~l~~i~~~~~~~~-~------~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG 156 (515)
|||+++.++.++..++.++++++ + ++.++++|+++|++.|...+....++.|++|+++|++++++.+.+..+|
T Consensus 84 Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g 163 (502)
T TIGR00887 84 GRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFG 163 (502)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHH
Confidence 99999999999999999998887 6 7899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhH---------------------------HHhHHHHHhhhHHHHHHHHHhhcccCcchhhhhcCChh-HHHH
Q psy15227 157 TLAILLIGNH---------------------------VSYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLK-KTEK 208 (515)
Q Consensus 157 ~~~~~~l~~~---------------------------l~wr~~f~i~~~~~~~~~~~~~~~pesp~~~~~~~~~~-~~~~ 208 (515)
.++++.++.. .+||+++.+.++++++..+..+++||||+|+..++|.+ ++.+
T Consensus 164 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~ 243 (502)
T TIGR00887 164 ILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAAS 243 (502)
T ss_pred HHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHH
Confidence 8888776532 26999999998888887777788999999999887764 4666
Q ss_pred HHHhhcCCCc-ChHHHHHHHHHHhhhhhhchhhhhhhhccccchh--HHHHHHHHHHHHHhhchHHHHHHHHhhhcccCC
Q psy15227 209 SLKWYRGNKK-DVMEEMNSIMDKTQEDLKSKTGYLELLTNKSNRR--AFTLVMAASLFQRLGGITSMITYSSTLLPKLDN 285 (515)
Q Consensus 209 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 285 (515)
.+++.+..+. +..++.++.++ +++..+.+++++++++..++ +..+......+.....++....+.|.++++.|+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~~G~ 320 (502)
T TIGR00887 244 DMSAVLQVKIEAEPDEVEKAST---AVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSAIGY 320 (502)
T ss_pred HHHHHhccccccCcccccchhc---cccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcC
Confidence 5665543221 11111111111 11111235677765321111 222222222222222334555667888888887
Q ss_pred CCCCcch------------hHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCCccHHH
Q psy15227 286 AYFGPDQ------------CILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPY 353 (515)
Q Consensus 286 ~~~~~~~------------~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (515)
+....+. ......++.+++.++.++++||+|||+++..+..+.+++..++..... ........
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~-----~~~~~~~~ 395 (502)
T TIGR00887 321 SPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYN-----HLSTHGFL 395 (502)
T ss_pred CCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHH-----hcchhHHH
Confidence 6443221 223344566778899999999999999988888777776665554321 00111111
Q ss_pred HHHHHHHHHH-hcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhh----------chhHHHHHHH
Q psy15227 354 ITTLLYAASY-YGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSL----------GQHVIFFIYS 422 (515)
Q Consensus 354 ~~~~l~~~~~-~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~----------g~~~~~~~~~ 422 (515)
....+....+ .+..+..+.+.+|.+|++.|+++.|+.+..++++++++|.+.+.+.+.. +....+++++
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~ 475 (502)
T TIGR00887 396 AIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFA 475 (502)
T ss_pred HHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHH
Confidence 2222222223 4556777788999999999999999999999999999999999998843 3445778888
Q ss_pred HHHHHHHHHHHHHhhccccccHHHHH
Q psy15227 423 SVHFCSVVFNYFYLMETKQKTLAEIQ 448 (515)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (515)
++++++.+.. +++||+++++++|.+
T Consensus 476 ~~~~~~~i~~-~~lpEt~~~~leei~ 500 (502)
T TIGR00887 476 LFMFLGILFT-LLIPETKGKSLEELS 500 (502)
T ss_pred HHHHHHHHHh-eEeccCCCCCHHhhh
Confidence 8887776654 567999998887654
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=338.49 Aligned_cols=436 Identities=22% Similarity=0.294 Sum_probs=324.4
Q ss_pred chhHHHHHHHHHHHHHHhhhhhccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhh
Q psy15227 7 SYVYQIIATNTASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRK 86 (515)
Q Consensus 7 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr 86 (515)
..++.+..+.+++++.+.++++.+.+++..|.+.+.-.+-...+++.++.+.+++.+++.++..++++++|+++||+|||
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr 85 (479)
T PRK10077 6 NSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRR 85 (479)
T ss_pred cchHHHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 34456677777888899999999999999887755310000011228899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhh-------------hhhHHHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhh
Q psy15227 87 TTLLLNALLCLPTWFLVVSN-------------KIECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQ 153 (515)
Q Consensus 87 ~~l~~~~~l~~i~~~~~~~~-------------~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~ 153 (515)
++++++.+++.++.+.++++ .++.++++|+++|++.|...+...++++|++|+++|++++++.+.+.
T Consensus 86 ~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~ 165 (479)
T PRK10077 86 DSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAI 165 (479)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHH
Confidence 99999999999998887751 35678899999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhH------------HHhHHHHHhhhHHHHHHHHHhhcccCcchhhhhcCChhHHHHHHHhhcCCCcChH
Q psy15227 154 MVGTLAILLIGNH------------VSYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVM 221 (515)
Q Consensus 154 ~lG~~~~~~l~~~------------l~wr~~f~i~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (515)
.+|..+++.++.. .+||+.|++.+++.++..+..+++||+|+|+..+++.+++.+..++....++ .+
T Consensus 166 ~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~-~~ 244 (479)
T PRK10077 166 IFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTL-AT 244 (479)
T ss_pred HHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChh-HH
Confidence 9999988776532 3899999999888877776667799999999888888887776666554332 22
Q ss_pred HHHHHHHHHhhhhhhchhhhhhhhccccchhHHHHHHHHHHHHHhhchHHHHHHHHhhhcccCCCCCCcchhHHHHHHHH
Q psy15227 222 EEMNSIMDKTQEDLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIM 301 (515)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 301 (515)
...++.++..+++..+ ....+. .........+....+.+..+.+...++.|.+.++.|.+...........++..
T Consensus 245 ~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~ 319 (479)
T PRK10077 245 QALQEIKHSLDHGRKT---GGKLLM--FGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIALLQTIIVGVIN 319 (479)
T ss_pred HHHHHHHHHHHHhhhh---hhhhcc--hhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHH
Confidence 2222211111111100 011111 01112222233334444555566777889888888887666667777788889
Q ss_pred HHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHH-hcccchhhhhhcccccc
Q psy15227 302 FLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASY-YGIGCLPNILVSELFPI 380 (515)
Q Consensus 302 ~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~p~ 380 (515)
+++.++.++++||+|||+.+..+..+.+++.+.+...... ............+++.++ ....|..+.+++|.+|+
T Consensus 320 ~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~ 395 (479)
T PRK10077 320 LTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT----QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPN 395 (479)
T ss_pred HHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhc----CcccHHHHHHHHHHHHHHhccccchhHHHhHhhCCh
Confidence 9999999999999999999999888888877776543220 111223333444555555 44557778999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHH------hhhchhHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHh
Q psy15227 381 NVRCQASSCASVALAFGSFITTKFHILIT------KSLGQHVIFFIYSSVHFCSVVFNYFYLMETKQKTLAEIQESIM 452 (515)
Q Consensus 381 ~~r~~~~g~~~~~~~lg~~~~~~~~g~l~------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (515)
+.|+++.|+.+...+++.++++.+.+.+. +..++...++++++.++++.++.+++.||+++++.+|.+++.+
T Consensus 396 ~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 473 (479)
T PRK10077 396 AIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEALWE 473 (479)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHh
Confidence 99999999999999999999987776544 5677777888888888888777777788999988887766554
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=349.84 Aligned_cols=416 Identities=17% Similarity=0.164 Sum_probs=322.8
Q ss_pred hhHHHHHHHHHHHHHHhhhhhccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhH
Q psy15227 8 YVYQIIATNTASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKT 87 (515)
Q Consensus 8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~ 87 (515)
.+++|.++++++++.+.++++...++..+|.+.. +++ ++..+.+++.+++.++.+++++++|+++||+|||+
T Consensus 162 ~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~---~~g-----ls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~ 233 (742)
T TIGR01299 162 GRFQWALFFVLGLALMADGVEVFVVGFVLPSAEK---DLC-----IPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQ 233 (742)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH
Confidence 5678888888999999999999999999998865 588 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhhhHHHHHHHHHhhH
Q psy15227 88 TLLLNALLCLPTWFLVVSN-KIECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNH 166 (515)
Q Consensus 88 ~l~~~~~l~~i~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~ 166 (515)
++++++++.++++++++++ +++.++++|++.|++.|+..+...+++.|++|+++|++.+++..+++.+|.++++.++..
T Consensus 234 ~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~ 313 (742)
T TIGR01299 234 CLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWA 313 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 999999999999999999999999999999999999999999999999999988876532
Q ss_pred H-----------------HhHHHHHhhhHHHHHHHHHhhcccCcchhhhhcCChhHHHHHHHhhcCCCcC----hHHHH-
Q psy15227 167 V-----------------SYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKD----VMEEM- 224 (515)
Q Consensus 167 l-----------------~wr~~f~i~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~- 224 (515)
+ +||+.+++.++++++.++..+++||||+|+..+++.+++.+.+++++..+.. ..+..
T Consensus 314 il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~ 393 (742)
T TIGR01299 314 IIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFS 393 (742)
T ss_pred HHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHH
Confidence 2 5999999988888877777778999999999999999999999988765421 11110
Q ss_pred -HHHHHHhh-----h-hhhc------------------hhhhhhhhccccchhHHHHHHHHHHHHHhhchHHHHHHHHhh
Q psy15227 225 -NSIMDKTQ-----E-DLKS------------------KTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTL 279 (515)
Q Consensus 225 -~~~~~~~~-----~-~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (515)
.+.+.... + ++.. ..+++++++. .++++.++....++. ...+++.+..|.|.+
T Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~-~~~~~tl~l~~~wf~-~~~~yygl~~w~P~~ 471 (742)
T TIGR01299 394 VNHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNP-EVREITIKLMGVWFT-LSFGYYGLSVWFPDM 471 (742)
T ss_pred HHHHHHhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCc-cHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 01000000 0 0000 0134555553 455555555555544 444678888898876
Q ss_pred hccc------------------------------------------CCC------------------C--C---------
Q psy15227 280 LPKL------------------------------------------DNA------------------Y--F--------- 288 (515)
Q Consensus 280 ~~~~------------------------------------------g~~------------------~--~--------- 288 (515)
+++. |+. . .
T Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~ 551 (742)
T TIGR01299 472 IKHLQADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTF 551 (742)
T ss_pred HHHHHHHHHHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccch
Confidence 4331 000 0 0
Q ss_pred --------------------------------------------CcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHh
Q psy15227 289 --------------------------------------------GPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFS 324 (515)
Q Consensus 289 --------------------------------------------~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~ 324 (515)
.......+..++.+++.++.++++||+|||+++..+
T Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~ 631 (742)
T TIGR01299 552 IDTLFENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGS 631 (742)
T ss_pred hhhhccccchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 012224556688899999999999999999999998
Q ss_pred hHHHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHH
Q psy15227 325 AALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKF 404 (515)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~ 404 (515)
.++.+++.+++++ ..+....++..++++++..+..+...++++|++|++.|++++|+.++..++|.+++|.+
T Consensus 632 ~~lsai~~ll~~~--------~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i 703 (742)
T TIGR01299 632 MVLSCISCFFLSF--------GNSESAMIALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILI 703 (742)
T ss_pred HHHHHHHHHHHHH--------HccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888777665 23333444444555555555667788999999999999999999999999999999999
Q ss_pred HHHHHhhhchhHHHHHHHHHHHHHHHHHHHHhhcccccc
Q psy15227 405 HILITKSLGQHVIFFIYSSVHFCSVVFNYFYLMETKQKT 443 (515)
Q Consensus 405 ~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (515)
.+.+.+. +...++++.+++.++++++. .++||++++.
T Consensus 704 ~g~L~~~-~~~~pf~i~a~~lll~~ll~-~~LPET~~~~ 740 (742)
T TIGR01299 704 FGSFVGI-TKAAPILFASAALACGGLLA-LKLPDTRGQV 740 (742)
T ss_pred HHHHHHh-hhHHHHHHHHHHHHHHHHHH-HhCCCCcccc
Confidence 9988774 45567777777777766665 4568887654
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >KOG0254|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-39 Score=325.60 Aligned_cols=439 Identities=26% Similarity=0.367 Sum_probs=360.9
Q ss_pred hHHHHHHHHHHHHHHhhhhh--ccchhhhhhcccCCCCcccccccccch--hhHHHHHHHHHHHhhhhhhhHhhhhhhhh
Q psy15227 9 VYQIIATNTASISLLIAGCW--IAWPSVMIKRLTDENPDLENIGIRLNK--YQLSWMVSLLDLGNAISPIFAGILVEKIG 84 (515)
Q Consensus 9 ~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~s~--~~~~~~~s~~~lg~~i~~~~~G~l~Dr~G 84 (515)
...........++.+..+++ .+..++..+.+.+...... ...+. .+.+|+.++..++..++++++|+++|++|
T Consensus 41 ~~~~~~~~~~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~---~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~G 117 (513)
T KOG0254|consen 41 PFVILLALVAALGGLLFGYDGDIGGISGALDFLQRFASLYD---LSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIG 117 (513)
T ss_pred eehHHHHHHHHHHHHHhCcccccccchhhHHHHHhcccccc---cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45566667777788888887 6777777776655322111 00222 46699999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhhhHHHHHHHHH
Q psy15227 85 RKTTLLLNALLCLPTWFLVVSN-KIECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLI 163 (515)
Q Consensus 85 rr~~l~~~~~l~~i~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l 163 (515)
||+.++++.+++.++.++++++ |+++++++|+++|+|.|......+.+++|..|++.||...+..+....+|..++..+
T Consensus 118 Rk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~ 197 (513)
T KOG0254|consen 118 RKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCI 197 (513)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 999999999999999999999999999999999999999999999999999999777
Q ss_pred hhHH-----HhHHHHHhhhHHHHHHHHHhhcccCcchhhhhcCChhHHHHHHHhhcC-CCcChHHHHHHHHHHh-hhh--
Q psy15227 164 GNHV-----SYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRG-NKKDVMEEMNSIMDKT-QED-- 234 (515)
Q Consensus 164 ~~~l-----~wr~~f~i~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~-- 234 (515)
+... +||..+.+..+++++..+..+++||||+|+.++++.+++++.++++++ .+++.+.+.++.+... .+.
T Consensus 198 ~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~ 277 (513)
T KOG0254|consen 198 NYGTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEV 277 (513)
T ss_pred hhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhc
Confidence 7666 699999999999998888877899999999999999999999999998 3444555554444111 111
Q ss_pred hhchhhhhhhhccccchhHHHHHHHHHHHHHhhchHHHHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhh
Q psy15227 235 LKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDI 314 (515)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 314 (515)
.+.+..+.++++ +..+++.+..+.+..++++++.+...+|.+.+++..|.+... .......++..+++..++.++.||
T Consensus 278 ~~~~~~~~~l~~-~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~ 355 (513)
T KOG0254|consen 278 AEGKASWGELFS-PKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDR 355 (513)
T ss_pred ccccccHHHhcC-cchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111223555555 568888999999999999999999999999999998877333 667777888899999999999999
Q ss_pred hCCchhHHHhhHHHHHHHHHHHHHHHhhCC----CCCCccHHHHHHHHHHHHH-hcccchhhhhhcccccchhhhhhhhH
Q psy15227 315 LGRKPLSCFSAALGCLLTFSTGLFYLYQGE----LPNFQYIPYITTLLYAASY-YGIGCLPNILVSELFPINVRCQASSC 389 (515)
Q Consensus 315 ~grr~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~p~~~r~~~~g~ 389 (515)
+|||+.++.+...+.++.++++........ .....+..++..+++...+ .+..|+.+.+.+|.+|.+.|+.+.++
T Consensus 356 ~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~ 435 (513)
T KOG0254|consen 356 FGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASL 435 (513)
T ss_pred hccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHH
Confidence 999999999999999999988876654432 1234456667777777777 88899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHH-HHHHHhhccccccHHHHHHHHh
Q psy15227 390 ASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSVV-FNYFYLMETKQKTLAEIQESIM 452 (515)
Q Consensus 390 ~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 452 (515)
....+++.+.+.......+.+..+....|..+++.+.+... .+++..||+++++.+|+++..+
T Consensus 436 ~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~~~ 499 (513)
T KOG0254|consen 436 AVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINELFE 499 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHHHH
Confidence 99999999998887777777665534567777777777777 6778899999999999888666
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=316.53 Aligned_cols=435 Identities=25% Similarity=0.350 Sum_probs=320.4
Q ss_pred chhHHHHHHHHHHHHHHhhhhhccchhhhhhcccCCCCccc---ccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhh
Q psy15227 7 SYVYQIIATNTASISLLIAGCWIAWPSVMIKRLTDENPDLE---NIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKI 83 (515)
Q Consensus 7 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~ 83 (515)
+.++.+....++.++.++.+++.....+.+|.+.. +++ +.+.+.+..+.+++.+.+.++..++++++|+++||+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~ 98 (481)
T TIGR00879 22 TYWKVALLSLIAAIGGLMFGYDTGVIGGALALPAF---EFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRF 98 (481)
T ss_pred ccHHHHHHHHHHHHHHHhcccccchhhhhhhcHHH---HHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhh
Confidence 34555555666667778888999998888887654 244 001114489999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhh----hhhHHHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhhhHHHHH
Q psy15227 84 GRKTTLLLNALLCLPTWFLVVSN----KIECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLA 159 (515)
Q Consensus 84 Grr~~l~~~~~l~~i~~~~~~~~----~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~ 159 (515)
|||++++++.++..++.+++.+. +++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..+
T Consensus 99 grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~ 178 (481)
T TIGR00879 99 GRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILV 178 (481)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHH
Confidence 99999999999999999998665 45689999999999999999999999999999999999999999999999999
Q ss_pred HHHHh---hH----HHhHHHHHhhhHHHHHHHHHhhcccCcchhhhhcCChhHHHHHHHhhcCCCcChHHHHH---HHHH
Q psy15227 160 ILLIG---NH----VSYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMN---SIMD 229 (515)
Q Consensus 160 ~~~l~---~~----l~wr~~f~i~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 229 (515)
++.++ .. .+||+.|++.++..++..+..+++||+|++...+++.+++.+..++....+++..+..+ ..+.
T Consensus 179 ~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (481)
T TIGR00879 179 AYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDI 258 (481)
T ss_pred HHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHH
Confidence 99998 33 38999999977777766666677999999887777766665555554433221111111 0000
Q ss_pred Hh-hhhhhchhhhhhhhcccc-chhHHHHHHHHHHHHHhhchHHHHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHH
Q psy15227 230 KT-QEDLKSKTGYLELLTNKS-NRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFL 307 (515)
Q Consensus 230 ~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 307 (515)
.. .+.+..+..+.+.++..+ ..++.+....+..+...........+.|.+.++.|++..+.+.......+..+++.++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 338 (481)
T TIGR00879 259 KRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFV 338 (481)
T ss_pred HHHHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHH
Confidence 00 001111112333333211 2344455555555555555566778888888888988777778888888999999999
Q ss_pred HHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCC--CCccHHHHHHHHHHHHH-hcccchhhhhhcccccchhhh
Q psy15227 308 QAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELP--NFQYIPYITTLLYAASY-YGIGCLPNILVSELFPINVRC 384 (515)
Q Consensus 308 ~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~p~~~r~ 384 (515)
.++++||++||+.+..+..+.+++.+.+........... ...+.......++..++ .+..+....+..|.+|++.|+
T Consensus 339 ~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 418 (481)
T TIGR00879 339 AIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRP 418 (481)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHH
Confidence 999999999999988887777777666653222111000 01233333344444444 555677778889999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHhhccccccH
Q psy15227 385 QASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFNYFYLMETKQKTL 444 (515)
Q Consensus 385 ~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (515)
++.|+.+...+++++++|.+.+.+.++.++...|++.+++++++.++.+++.+|+++++.
T Consensus 419 ~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~ 478 (481)
T TIGR00879 419 KGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTL 478 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCCCCCh
Confidence 999999999999999999999999999999888999988888888777666777665543
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-37 Score=314.90 Aligned_cols=386 Identities=18% Similarity=0.253 Sum_probs=290.5
Q ss_pred hhhcccCCCCcccccccccc---hhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhh-hhhH
Q psy15227 35 MIKRLTDENPDLENIGIRLN---KYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALLCLPTWFLVVSN-KIEC 110 (515)
Q Consensus 35 ~~~~l~~~~~~~~~~~~~~s---~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~-~~~~ 110 (515)
..|.+.+ +++ ++ +.+.+++.+++.++..++++++|+++||+|||++++++.++..++.++++++ +++.
T Consensus 111 ~~~~i~~---e~~-----l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~ 182 (505)
T TIGR00898 111 FSSTIVT---EWD-----LVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTV 182 (505)
T ss_pred ccccEEE---Eec-----ceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHH
Confidence 4455544 577 88 8999999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhhhHHHHHHHHHhhHH-HhHHHHHhhhHHHHHHHHHhhc
Q psy15227 111 LYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHV-SYNSLNIALSILPVIFFILFSF 189 (515)
Q Consensus 111 l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~l-~wr~~f~i~~~~~~~~~~~~~~ 189 (515)
++++|++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.++..+ +||+.+++.+++.++..+..++
T Consensus 183 ~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~ 262 (505)
T TIGR00898 183 FLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPDWRWLQLAVSLPTFLFFLLSWF 262 (505)
T ss_pred HHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999988766 8999999999988877777778
Q ss_pred ccCcchhhhhcCChhHHHHHHHhhcCCCcC-hHHHHHHHH-HHhhhhhhchhhhhhhhccccchhHHHHHHHHHHHHHhh
Q psy15227 190 VPETPHFHAAKNNLKKTEKSLKWYRGNKKD-VMEEMNSIM-DKTQEDLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLG 267 (515)
Q Consensus 190 ~pesp~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (515)
+||+|+|+..+++.+++.+.+++..+.+.. ..++..+.. ++..++++++.+++++++++..+...+.....+...
T Consensus 263 ~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--- 339 (505)
T TIGR00898 263 VPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTT--- 339 (505)
T ss_pred cCCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHH---
Confidence 999999999999999988877776543221 111111111 111111122346778888776665544433332221
Q ss_pred chHHHHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCC
Q psy15227 268 GITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPN 347 (515)
Q Consensus 268 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (515)
....+..+......+. +........++..+++.++.+++.||+|||+.+..+.++.+++.+++.... ..
T Consensus 340 --~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~------~~ 408 (505)
T TIGR00898 340 --AFSYYGLVLDLGNLGG---NIYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVP------VD 408 (505)
T ss_pred --HHHHHHHhccccccCC---ChHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcC------CC
Confidence 1111222333333343 234455667788899999999999999999999888888777766655411 11
Q ss_pred CccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHH
Q psy15227 348 FQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFC 427 (515)
Q Consensus 348 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~ 427 (515)
..+...+..++.+++.....+..+.+.+|.+|++.|+++.|+.++...+|++++|.+.+ + +..+...++.+++++.++
T Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~~~~~~ 486 (505)
T TIGR00898 409 LYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFGGLALL 486 (505)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHHHHHHH
Confidence 12333333444444445556777889999999999999999999999999999999998 4 445666788888888777
Q ss_pred HHHHHHHHhhccccccHH
Q psy15227 428 SVVFNYFYLMETKQKTLA 445 (515)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~ 445 (515)
+.++. +++||+++++++
T Consensus 487 ~~~~~-~~lpet~~~~l~ 503 (505)
T TIGR00898 487 AGILT-LFLPETKGVPLP 503 (505)
T ss_pred HHHHH-HcCcCCCCCCCC
Confidence 76665 566888776543
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-37 Score=310.74 Aligned_cols=395 Identities=17% Similarity=0.164 Sum_probs=273.3
Q ss_pred HHHHHHHHHHHHhhhhhccchhhhhhcccCCCCcccccccccchh--hHHH--HHHHHHHHhhhhhhhHhhhhhhhhhhH
Q psy15227 12 IIATNTASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKY--QLSW--MVSLLDLGNAISPIFAGILVEKIGRKT 87 (515)
Q Consensus 12 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~--~~~~--~~s~~~lg~~i~~~~~G~l~Dr~Grr~ 87 (515)
+.+.....++.+++++|....+...|.+.++ ++. +.++. ..+. +.++.++++.++++++|+++||+|||+
T Consensus 15 ~~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~---~~~---~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~ 88 (490)
T PRK10642 15 RKAITAASLGNAMEWFDFGVYGFVAYALGKV---FFP---GADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQK 88 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hCC---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHH
Confidence 3456677889999999999999999987653 430 02221 1222 257888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhh-hhhH--------HHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhhhHHHH
Q psy15227 88 TLLLNALLCLPTWFLVVSN-KIEC--------LYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTL 158 (515)
Q Consensus 88 ~l~~~~~l~~i~~~~~~~~-~~~~--------l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ 158 (515)
++.++.+++++++++++++ |++. ++++|+++|++.|+.++...+++.|++|+++|+++.++.+.+..+|..
T Consensus 89 ~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~ 168 (490)
T PRK10642 89 ILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFV 168 (490)
T ss_pred HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 9999999999999999999 8764 889999999999999999999999999999999999999988888887
Q ss_pred HHHHHhh------------HHHhHHHHHhhhHHHHHHHHHhhcccCcchhhhhcCChhHHHHHHHhhcCCCcChHHHHHH
Q psy15227 159 AILLIGN------------HVSYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNS 226 (515)
Q Consensus 159 ~~~~l~~------------~l~wr~~f~i~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (515)
+++.+.. ..|||+.|++.++++++..++...+||+|+|...+++.++..+
T Consensus 169 lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~------------------ 230 (490)
T PRK10642 169 LGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGDR------------------ 230 (490)
T ss_pred HHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhcc------------------
Confidence 7765432 2489999999887776655555678999987533221111000
Q ss_pred HHHHhhhhhhchhhhhhhhccccchhHHHHHHHHHHHHHhhchHHHHHHHHhhhcc-cCCCCCCcchhHHHHHHHHHHHH
Q psy15227 227 IMDKTQEDLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPK-LDNAYFGPDQCILVFMIIMFLSN 305 (515)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~ 305 (515)
+ ...+.++.++++++++ .++..........+ ....++....|.|.++++ .|++..+.........++.+++.
T Consensus 231 --~--~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~ 303 (490)
T PRK10642 231 --E--GLQDGPKVSFKEIATK--HWRSLLTCIGLVIA-TNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQ 303 (490)
T ss_pred --c--cccccccCCHHHHHHH--hHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 0 0000112345555552 23333333222222 223455667788888754 57775556666667778888999
Q ss_pred HHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhh
Q psy15227 306 FLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQ 385 (515)
Q Consensus 306 ~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~ 385 (515)
++.|+++||+|||+.+..+.++..+....+..... ..+.....+..++.+++.....+....+..|.+|++.|++
T Consensus 304 ~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~ 378 (490)
T PRK10642 304 PVMGLLSDRFGRRPFVILGSVALFVLAIPAFILIN-----SNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYS 378 (490)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHh-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchH
Confidence 99999999999999887766544333222111111 2222333334444444443334445567789999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhc-hhHHHHHHHHHHHHHHHHHHHHhhcccccc
Q psy15227 386 ASSCASVALAFGSFITTKFHILITKSLG-QHVIFFIYSSVHFCSVVFNYFYLMETKQKT 443 (515)
Q Consensus 386 ~~g~~~~~~~lg~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (515)
+.|+.+....+++.++|.+.+++.+..+ ++.++++..+.++++.+.. ++.||++++.
T Consensus 379 ~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~-~~~pes~~~~ 436 (490)
T PRK10642 379 ALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITG-VTMKETANRP 436 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH-HHhccccCCC
Confidence 9998777778888999999999988655 4555555555555555544 4558776543
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-37 Score=284.54 Aligned_cols=398 Identities=14% Similarity=0.108 Sum_probs=301.0
Q ss_pred hhHHHHHHHHHHHHHHhhhhhccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhH
Q psy15227 8 YVYQIIATNTASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKT 87 (515)
Q Consensus 8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~ 87 (515)
+++|+.+.+...+++....+..-..+.+.|.+.+ +.+ +|.+|+|++.|++.+.+.++-.+.|.++||.+.|+
T Consensus 24 ~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e---~~~-----lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~ 95 (448)
T COG2271 24 KRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIE---DGG-----LSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRY 95 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHH---hcC-----CCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCce
Confidence 4567788888889999899999999999999877 577 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhhhHHHHHHHHHh--
Q psy15227 88 TLLLNALLCLPTWFLVVSN-KIECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIG-- 164 (515)
Q Consensus 88 ~l~~~~~l~~i~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~-- 164 (515)
.+.+++++.++.+++++++ +.+.+.+.-++.|..+|...|++...++.|++++|||+..++++++-++|..+.+++.
T Consensus 96 fm~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~l 175 (448)
T COG2271 96 FMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALL 175 (448)
T ss_pred eehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHH
Confidence 9999999999999999999 9999999999999999999999999999999999999999999999999999988887
Q ss_pred hHH----HhHHHHHhhhHHHHHHHHHhh-cccCcchhhhhcCChhHHHHHHHhhcCCCcChHHHHHHHHHHhhhhhhchh
Q psy15227 165 NHV----SYNSLNIALSILPVIFFILFS-FVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKT 239 (515)
Q Consensus 165 ~~l----~wr~~f~i~~~~~~~~~~~~~-~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (515)
..+ +||..|++.++++++..+..+ ..+++|+-.-... .++.+. |..+.. .++++.+..
T Consensus 176 a~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~--------ie~~~~-------d~~e~~--~~~~~~~~l 238 (448)
T COG2271 176 AFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPP--------IEEYRG-------DPLEIY--EEEKENEGL 238 (448)
T ss_pred HHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCC--------HHHhhc-------Cchhhh--hhhccCCCc
Confidence 444 899999999999987776655 4788875211000 000000 000110 011111112
Q ss_pred hhhhhhccccchhHHHHHHHHHHHHHhhchHHHHHHHHhhhcc-cCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhh--C
Q psy15227 240 GYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPK-LDNAYFGPDQCILVFMIIMFLSNFLQAPLMDIL--G 316 (515)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--g 316 (515)
+.++++.+...+++.++.+++..+.....-+.+..|.|.|+.+ .+++..++....+.+-.++++|+++.|+++||+ |
T Consensus 239 s~~~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkg 318 (448)
T COG2271 239 TAWQIFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKG 318 (448)
T ss_pred cHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccc
Confidence 3333332222223333344444443334467888999998877 599988999999999999999999999999996 5
Q ss_pred CchhHHHhh-HHHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHH
Q psy15227 317 RKPLSCFSA-ALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALA 395 (515)
Q Consensus 317 rr~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~ 395 (515)
||....+.+ +...++++.+.. .+..+.++..+++++.|+...+..-+.-....|..|++..|++.|+...+.+
T Consensus 319 rR~p~~~i~~~~i~~~~~~~w~------~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Y 392 (448)
T COG2271 319 RRGPMALIFMLLITASLVLYWL------APNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAY 392 (448)
T ss_pred ccchHHHHHHHHHHHHHHHHHc------CCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHH
Confidence 665544333 333333333222 1122334445555555555455555555678899999999999999999999
Q ss_pred H-HHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHh
Q psy15227 396 F-GSFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFNYFYL 436 (515)
Q Consensus 396 l-g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 436 (515)
+ |...+....|++.|.+||...|.++.+.++++.++.....
T Consensus 393 l~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~ 434 (448)
T COG2271 393 LIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPVW 434 (448)
T ss_pred HhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 9 9999999999999999999999998888888877664444
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-36 Score=281.20 Aligned_cols=377 Identities=15% Similarity=0.166 Sum_probs=298.2
Q ss_pred ccccchhHHHHHHHHHHHHHHhhhhhccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhh
Q psy15227 3 VFKRSYVYQIIATNTASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEK 82 (515)
Q Consensus 3 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr 82 (515)
..+.+++..|..++.+.++.|..+.........+|.+.+ |+| +|..+.|++.|.|.++..+++++...+.||
T Consensus 3 ~~~~~~~~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~---dl~-----vs~~~aG~lis~yAl~~ai~ap~l~~lt~r 74 (394)
T COG2814 3 TPATARKPMWLALLALALAAFAIGTTEFVPVGLLPPIAA---DLG-----VSEGAAGQLITAYALGVALGAPLLALLTGR 74 (394)
T ss_pred CcccccccchHHHHHHHHHHHHHHhHHHHHHhchHHHHH---HcC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 345566677888889999999999999999999999977 699 999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhhhHHHHHHH
Q psy15227 83 IGRKTTLLLNALLCLPTWFLVVSN-KIECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAIL 161 (515)
Q Consensus 83 ~Grr~~l~~~~~l~~i~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~ 161 (515)
+.||++++..+.++.+++++++++ ||+.++++|++.|++.|..++...++..+..|+++|++++++...+..++.++|.
T Consensus 75 ~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~Gv 154 (394)
T COG2814 75 LERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGV 154 (394)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999 9999999999999999999999999999999999999999999999888777665
Q ss_pred HHh----hHHHhHHHHHhhhHHHHHHHHHhh-cccCcchhhhhcCChhHHHHHHHhhcCCCcChHHHHHHHHHHhhhhhh
Q psy15227 162 LIG----NHVSYNSLNIALSILPVIFFILFS-FVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLK 236 (515)
Q Consensus 162 ~l~----~~l~wr~~f~i~~~~~~~~~~~~~-~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (515)
.++ +.+|||..|+..++++++..+..+ .+| |+... ++.+.
T Consensus 155 PLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP--~~~~~---------------------------------~~~~~ 199 (394)
T COG2814 155 PLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP--PSEIS---------------------------------GSLPG 199 (394)
T ss_pred cHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC--CccCC---------------------------------CCCCc
Confidence 555 555999999999999988877665 578 21000 00001
Q ss_pred chhhhhhhhccccchhHHHHHHHHHHHHHhhchHHHHHHHHhhh-cccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhh
Q psy15227 237 SKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLL-PKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDIL 315 (515)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~ 315 (515)
+..+..+++|+|..+...... +..+.+.+...+|...++ +..|++....+.....++++.++|..++|++.||
T Consensus 200 ~~~~~~~~l~~p~v~~~l~~t-----~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr- 273 (394)
T COG2814 200 PLRTLLRLLRRPGVLLGLLAT-----FLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR- 273 (394)
T ss_pred chhHHHHHhcCchHHHHHHHH-----HHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-
Confidence 112244566665444332222 222234455555555554 4568898899999999999999999999999999
Q ss_pred CCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHH
Q psy15227 316 GRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALA 395 (515)
Q Consensus 316 grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~ 395 (515)
+.|+.+.....+.++..+.+.+. .++.+.......+.++.............++. -++.++.+.+++....+
T Consensus 274 ~~~~~l~~~~~l~a~~~l~l~~~-------~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~-~p~~~~~a~sl~~aa~n 345 (394)
T COG2814 274 GPRRALIAALLLLALALLALTFT-------GASPALALALLFLWGFAFSPALQGLQTRLARL-APDAADLAGSLNVAAFN 345 (394)
T ss_pred cchhHHHHHHHHHHHHHHHHHHh-------cchHHHHHHHHHHHHHHhhhhhhHHHHHhccc-CCCchHHHHHHHHHHHH
Confidence 88888877777777777666552 33445555555555555444444444556663 35678999999999999
Q ss_pred HHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHh
Q psy15227 396 FGSFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFNYFYL 436 (515)
Q Consensus 396 lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 436 (515)
+|..+|..++|.+.|+.|+....+..+...+++.++.....
T Consensus 346 lgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~ 386 (394)
T COG2814 346 LGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSA 386 (394)
T ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888888888888777764443
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-43 Score=352.59 Aligned_cols=431 Identities=27% Similarity=0.406 Sum_probs=335.7
Q ss_pred HHHHHHHhhhhhccchhhhhhcccCCCCc-cccccc--ccchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHHHHHH
Q psy15227 17 TASISLLIAGCWIAWPSVMIKRLTDENPD-LENIGI--RLNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNA 93 (515)
Q Consensus 17 ~~~l~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~--~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~~~~ 93 (515)
+..++.+.+++|.+..+...+.......+ .+..+. +.++.+.+++.+...+|..+|++++|.++||+|||+.+.++.
T Consensus 4 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~ 83 (451)
T PF00083_consen 4 IASLGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISA 83 (451)
T ss_pred eeHHHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhcccccccccccccccccccccccc
Confidence 34556688999998887776654421111 110000 013456799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhh----hhhHHHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhhhHHHHHHHHHhhHH--
Q psy15227 94 LLCLPTWFLVVSN----KIECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHV-- 167 (515)
Q Consensus 94 ~l~~i~~~~~~~~----~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~l-- 167 (515)
++..+++++.+++ +++.+.++|+++|++.|...+....++.|..|+++|++..++.+.+..+|.+++..++...
T Consensus 84 ~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~ 163 (451)
T PF00083_consen 84 LLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSY 163 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999988 4899999999999999999999999999999999999999999999999998888776433
Q ss_pred --H---hHHHHHhhhHHHHHHHHHhhcccCcchhhhhcCChhHHHHHHHhhcCCCcChHHHHHHHHHHhhhhhhchhhhh
Q psy15227 168 --S---YNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGYL 242 (515)
Q Consensus 168 --~---wr~~f~i~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (515)
+ ||+.+++.++++++..+..+++||||+|+..++|.+++++.++++++.+. .+++.++..++.++.++.+.+++
T Consensus 164 ~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 242 (451)
T PF00083_consen 164 YSDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEI-EDEEIEEIKAEKKESQESKASWR 242 (451)
T ss_pred ccccccccccccccccccccccccccccccccceeccccccccccccccccccccc-ccccccccccccccccccceeee
Confidence 4 99999999999988877778899999999999999999999998765533 22222333332222222235677
Q ss_pred hhhccccchhHHHHHHHHHHHHHhhchHHHHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHH
Q psy15227 243 ELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSC 322 (515)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~ 322 (515)
++++++..+++....+.+..+.+..+......|.+.++++.+.+.. ........+...++.+++.++.||+|||++++
T Consensus 243 ~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i 320 (451)
T PF00083_consen 243 DLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLI 320 (451)
T ss_pred eccccccccccccccccccccccccccccccccccccccccccccc--cccccccccccccccccccccccccccccccc
Confidence 8888766667777777777777777777788888888888777633 44455666777888888889999999999998
Q ss_pred HhhHHHHHHHHHHHHHHHhhCCCC-CCccHHHHHHHHHHHHH-hcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHH
Q psy15227 323 FSAALGCLLTFSTGLFYLYQGELP-NFQYIPYITTLLYAASY-YGIGCLPNILVSELFPINVRCQASSCASVALAFGSFI 400 (515)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~ 400 (515)
.+....+++.+.++.......+.. ......++...++...+ .+..+..+.+.+|.+|++.|+++.|+....+++++++
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i 400 (451)
T PF00083_consen 321 IGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFI 400 (451)
T ss_pred cccccccccccccccccccccccccccccccceeeeeccccccccccccccccccccccccccccccccccccccccccc
Confidence 888888877776651111110000 11233344444444455 5777888899999999999999999999999999999
Q ss_pred HHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHH
Q psy15227 401 TTKFHILITKSLGQHVIFFIYSSVHFCSVVFNYFYLMETKQKTLAEIQES 450 (515)
Q Consensus 401 ~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (515)
++.+...+.+..+....+.++++++++..++.+++.||+++++++|.+++
T Consensus 401 ~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~~ 450 (451)
T PF00083_consen 401 IPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQEM 450 (451)
T ss_pred cccccccccccccccccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHhh
Confidence 99999998888875568888888888888888889999999999998764
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=301.72 Aligned_cols=386 Identities=9% Similarity=0.059 Sum_probs=272.5
Q ss_pred HHHHHHHHHHHHHHhhhhhccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHH
Q psy15227 10 YQIIATNTASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTL 89 (515)
Q Consensus 10 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l 89 (515)
.+|.....++++.+.+.+|....+...|.+.+ |+| ++..+.|++.+.+.+++.+++++.|+++||+|||+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~---~~~-----~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~ 76 (412)
T TIGR02332 5 LFRRLIIFLFILFIFSFLDRINIGFAGLTMGK---DLG-----LSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWI 76 (412)
T ss_pred ehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHh---hcC-----CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHH
Confidence 45666777777888899999999999997765 588 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhh-hhhHHHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhhhHHHHHHHHHhhH--
Q psy15227 90 LLNALLCLPTWFLVVSN-KIECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNH-- 166 (515)
Q Consensus 90 ~~~~~l~~i~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~-- 166 (515)
..+.+++++++++++++ |++.+++.|+++|++.+...+....++.|++|+++|++++++++.+.++|..+++.++..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~ 156 (412)
T TIGR02332 77 AGIMVLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYIL 156 (412)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 999999999999999999999999999999999999999999999999999999888754
Q ss_pred --------HHhHHHHHhhhHHHHHHHHHh-hcccCcchh---hhhcCChhHHHHHHHhhcCCCcChHHHHHHHHHHhhhh
Q psy15227 167 --------VSYNSLNIALSILPVIFFILF-SFVPETPHF---HAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQED 234 (515)
Q Consensus 167 --------l~wr~~f~i~~~~~~~~~~~~-~~~pesp~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (515)
.+||+.|++.++++++..+.. +++||+|+. +.++ +.+...++.+....+.++ .++ ...++.
T Consensus 157 ~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~----~~~~~~~~~~~~~~~~~~-~~~--~~~~~~ 229 (412)
T TIGR02332 157 ALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEE----DKKALKEMIDNDQLTLEQ-PEG--AFAHAA 229 (412)
T ss_pred hCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCHH----HHHHHHHHHHhccccccc-ccc--cccccc
Confidence 389999999888887655444 468998852 2111 111111111111000000 000 000000
Q ss_pred hhchhhhhhhhccccchhHHHHHHHHHHHHHhhchHHHHHHHHhhhccc--CCCCCCcchhHHHHHHHHHHHHHHHHHHH
Q psy15227 235 LKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKL--DNAYFGPDQCILVFMIIMFLSNFLQAPLM 312 (515)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 312 (515)
...+..++++++ +. ++......++.......+..|.|.++++. +.+..+++.......++.+++.++.|+++
T Consensus 230 ~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~ 303 (412)
T TIGR02332 230 MPQRSMLREIFT-PA-----IMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHS 303 (412)
T ss_pred ccHHHHHHHhcC-hH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHh
Confidence 000112333332 22 22223333333344667788999999874 55656778888889999999999999999
Q ss_pred hhhCCchhH-HHhhHHHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHH
Q psy15227 313 DILGRKPLS-CFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCAS 391 (515)
Q Consensus 313 d~~grr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~ 391 (515)
||++||+.. ........++. .+.. . ............+...+.....+.......|.+|++.|+++.|+.+
T Consensus 304 dr~~~r~~~~~~~~~~~~~~~-~~~~--~-----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~ 375 (412)
T TIGR02332 304 DRLKERKHHTALPYLFAAAGW-LLAS--A-----TDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVIN 375 (412)
T ss_pred cccCccHHHHHHHHHHHHHHH-HHHH--h-----cCCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHH
Confidence 999977743 33333333322 2111 1 1112222222222222332223444455678899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc-hhHHHHHHHHH
Q psy15227 392 VALAFGSFITTKFHILITKSLG-QHVIFFIYSSV 424 (515)
Q Consensus 392 ~~~~lg~~~~~~~~g~l~~~~g-~~~~~~~~~~~ 424 (515)
...++|++++|.+.|.+.|..| |...+.+.+++
T Consensus 376 ~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~ 409 (412)
T TIGR02332 376 ATGNIGSALSPFLIGILKDATGSFNSGLWFVAAL 409 (412)
T ss_pred HhhhhhhhhhhhhcccccccCCCCchhHHHHHHH
Confidence 9999999999999999999876 77666665544
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=293.77 Aligned_cols=379 Identities=17% Similarity=0.141 Sum_probs=287.4
Q ss_pred ccchhHHHHHHHHHHHHHHhhhhhccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhhh
Q psy15227 5 KRSYVYQIIATNTASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIG 84 (515)
Q Consensus 5 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~G 84 (515)
.++.+++|.++.++++..+.++++....+...|.+.+ +++ .++.+.+++.+.+.++..+++++.|+++||+|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-----~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g 78 (406)
T PRK11551 7 SASSSRLALTIGLCFLVALLEGLDLQSAGVAAPRMAQ---EFG-----LDVAQMGWAFSAGILGLLPGALLGGRLADRIG 78 (406)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3455688999999999999999999999999998866 588 99999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhhhHHHHHHHHH
Q psy15227 85 RKTTLLLNALLCLPTWFLVVSN-KIECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLI 163 (515)
Q Consensus 85 rr~~l~~~~~l~~i~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l 163 (515)
||+++..+.++..++.+++.++ +++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.+
T Consensus 79 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~ 158 (406)
T PRK11551 79 RKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVI 158 (406)
T ss_pred CchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 999999999999999999999999999999999999999999999999999999888
Q ss_pred hhHH----HhHHHHHhhhHHHHHHHHHh-hcccCcchhhhhcCChhHHHHHHHhhcCCCcChHHHHHHHHHHhhhhhhch
Q psy15227 164 GNHV----SYNSLNIALSILPVIFFILF-SFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSK 238 (515)
Q Consensus 164 ~~~l----~wr~~f~i~~~~~~~~~~~~-~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (515)
+..+ +||+.|++.++..++..+.. .++||+|++..++++.++. +
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-------------------------------~ 207 (406)
T PRK11551 159 GVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQR-------------------------------A 207 (406)
T ss_pred HHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhh-------------------------------h
Confidence 7554 89999998877666555443 4579987643221110000 0
Q ss_pred hhhhhhhccccchhHHHHHHHHHHHHHhhchHHHHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCc
Q psy15227 239 TGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRK 318 (515)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr 318 (515)
...+..++++..++ . .......+...........+.|.++++.|.+..+.+.......++.++++++.|++.||++||
T Consensus 208 ~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~ 285 (406)
T PRK11551 208 PVLRALFGEGRATA-T-LLLWISYFFTLIVLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPR 285 (406)
T ss_pred hhHHHHhhhhhhhH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 00011111111111 1 111111112222334566678888888898888889999999999999999999999999999
Q ss_pred hhHHHhhHHHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHH
Q psy15227 319 PLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGS 398 (515)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~ 398 (515)
+.+..+.....++...+.. .++.+...+...+.+++..+..+...++..|.+|++.|+++.|+.+...++|.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~ 357 (406)
T PRK11551 286 RVVLLIYAGILASLAALAA--------APSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGS 357 (406)
T ss_pred HHHHHHHHHHHHHHHHHHh--------cCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHH
Confidence 9887766655555444433 23333444444455555555667777889999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhchh-HHHHHHHHHHHHHHHHH
Q psy15227 399 FITTKFHILITKSLGQH-VIFFIYSSVHFCSVVFN 432 (515)
Q Consensus 399 ~~~~~~~g~l~~~~g~~-~~~~~~~~~~~~~~~~~ 432 (515)
.++|.+.|.+.++.+.. ..+.......+++.++.
T Consensus 358 ~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (406)
T PRK11551 358 MAGPLLAGQLLALGRSTVGVIGASIPVILVAALAA 392 (406)
T ss_pred HHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHH
Confidence 99999999999876544 34444444444444443
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=295.72 Aligned_cols=375 Identities=14% Similarity=0.123 Sum_probs=276.5
Q ss_pred ccccchhHHHHHHHHHHHHHHhhhhhccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhh
Q psy15227 3 VFKRSYVYQIIATNTASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEK 82 (515)
Q Consensus 3 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr 82 (515)
..+..+++++.....+.++.+.++++.....+.+|.+.+ ++| +++.+.+++.+++.+++.+++++.|+++||
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~-----~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr 79 (426)
T PRK12307 8 WYSEITRPQKNALFSAWLGYVFDGFDFMLIFYIMYLIKA---DLG-----LTDMEGAFLATAAFIGRPFGGALFGLLADK 79 (426)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---HhC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555677777888888889999999999999998865 588 999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhhhHHHHHHH
Q psy15227 83 IGRKTTLLLNALLCLPTWFLVVSN-KIECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAIL 161 (515)
Q Consensus 83 ~Grr~~l~~~~~l~~i~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~ 161 (515)
+|||+++.++.++.+++.++++++ +++.++++|+++|++.+...+....++.|++|+++|+++.++...+.++|.++++
T Consensus 80 ~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~ 159 (426)
T PRK12307 80 FGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAA 159 (426)
T ss_pred hCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHH
Confidence 999999999999999999999999 9999999999999999999999999999999999999999999999999999998
Q ss_pred HHhhHH----HhHHHHHhhhHHHHHHHHHhhcccCcchhhhhcCChhHHHHHHHhhcCCCcChHHHHHHHHHHhhhhhhc
Q psy15227 162 LIGNHV----SYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKS 237 (515)
Q Consensus 162 ~l~~~l----~wr~~f~i~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (515)
.+...+ +||+.|++..+..++........||++++..++.+.+ ++ . .....+..
T Consensus 160 ~l~~~l~~~~~w~~~f~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~------------~~-~---------~~~~~~~~ 217 (426)
T PRK12307 160 YFMPSFAEAYGWRAAFFVGLLPVLLVIYIRARAPESKEWEEAKLSGK------------GK-H---------SQSAWSVF 217 (426)
T ss_pred HHHHHHcccCCHHHHHHHHHHHHHHHHHHHHHCCCChHHHHhhhhcc------------cc-c---------cccchhhh
Confidence 877654 8999998865444333332223566654322110000 00 0 00000011
Q ss_pred hhhhhhhhccccchhHHHHHHHHHHHHHhhchHHHHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCC
Q psy15227 238 KTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGR 317 (515)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr 317 (515)
+.+++++++++..+..... ... .+...........+.|.++++.|.++...+.......++.++++++.+++.||++|
T Consensus 218 ~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~ 295 (426)
T PRK12307 218 SLSMKGLFNRAQFPLTLCV-FIV-LFSIFGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGL 295 (426)
T ss_pred hHHHHHHHhhchHHHHHHH-HHH-HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2245566665543322221 111 11122223345667788888888887777888888889999999999999999999
Q ss_pred chhHHHhhHHHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHH--hcccchhhhhhcccccchhhhhhhhHHHHHHH
Q psy15227 318 KPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASY--YGIGCLPNILVSELFPINVRCQASSCASVALA 395 (515)
Q Consensus 318 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~ 395 (515)
|+.+..+.++..+..+.+... ..... ..+...+++.+. .+..+....++.|.+|++.|+++.|+.+...+
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 367 (426)
T PRK12307 296 KKTFSIGLLMSFLFIFPLFRI-------PQDNY-LLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAA 367 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------ccccH-HHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHh
Confidence 998887776665554433321 11111 222233333332 33345555778899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhchhHH
Q psy15227 396 FGSFITTKFHILITKSLGQHVI 417 (515)
Q Consensus 396 lg~~~~~~~~g~l~~~~g~~~~ 417 (515)
+++.++|.+.|.+.+..|+...
T Consensus 368 ~~~~~gp~~~g~l~~~~g~~~~ 389 (426)
T PRK12307 368 TSGTFNSMAATWLGITMGLGAA 389 (426)
T ss_pred HHHHHHHHHHHHHHHcccHHHH
Confidence 9999999999999999886543
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=299.05 Aligned_cols=392 Identities=10% Similarity=-0.009 Sum_probs=274.3
Q ss_pred HHHHHHHHHHHHHHhhhhhccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHH
Q psy15227 10 YQIIATNTASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTL 89 (515)
Q Consensus 10 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l 89 (515)
+.+.+...+.++.+....+....++..|.+.+ ++| ++..+.|++.+.+.+++.+++++.|+++||+|||+++
T Consensus 26 ~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~---~~~-----~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l 97 (467)
T PRK09556 26 PFMQSYLVVFIGYLTMYLIRKNFKAAQNDMIS---TYG-----LSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFL 97 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChhhhhHHHHH---hcC-----CCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchH
Confidence 35556677777777888899999999998866 589 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh-----h-hhhHHHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhhhHHHHHHHHH
Q psy15227 90 LLNALLCLPTWFLVVS-----N-KIECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLI 163 (515)
Q Consensus 90 ~~~~~l~~i~~~~~~~-----~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l 163 (515)
..+.++++++.+..++ + +++.+++.|+++|++.+...+...++++||+|+++|++++++.+.+.++|.++++.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i 177 (467)
T PRK09556 98 PFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGV 177 (467)
T ss_pred HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHH
Confidence 8888887777666554 6 899999999999999999999999999999999999999999999999999999887
Q ss_pred hhHH-------HhHHHHHhhhHHHHHHHHHhh-cccCcchhhhhcCChhHHHHHHHhhcCCCcChHHHHHHHHHHhhhhh
Q psy15227 164 GNHV-------SYNSLNIALSILPVIFFILFS-FVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDL 235 (515)
Q Consensus 164 ~~~l-------~wr~~f~i~~~~~~~~~~~~~-~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (515)
...+ +||..|.+.++++++..+..+ +.+++|+.....+. ++ . ...... .++ +...+++.
T Consensus 178 ~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~-~~---~---~~~~~~-~~~-----~~~~~~~~ 244 (467)
T PRK09556 178 ALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGKA-EE---I---FGEPIS-EED-----KETESTDM 244 (467)
T ss_pred HHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCCh-hh---c---ccCccc-hhh-----hccccccC
Confidence 6432 588888888877776555444 45666642111110 00 0 000000 000 00000000
Q ss_pred hchhhh-hhhhccccchhHHHHHHHHHHHHHhhchHHHHHHHHhhhcc-cCCCCCCcchhHHHHHHHHHHHHHHHHHHHh
Q psy15227 236 KSKTGY-LELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPK-LDNAYFGPDQCILVFMIIMFLSNFLQAPLMD 313 (515)
Q Consensus 236 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d 313 (515)
.....+ ++.++++..+. ..+..++..........|.|.++++ .|++..+++.......++.+++.++.|+++|
T Consensus 245 ~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsD 319 (467)
T PRK09556 245 TKWQIFVEYVLKNPVIWL-----LCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSD 319 (467)
T ss_pred cHHHHHHHHHHcChHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000111 12455443332 2222222222345567888988754 6888778888888888999999999999999
Q ss_pred hhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHH
Q psy15227 314 ILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVA 393 (515)
Q Consensus 314 ~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~ 393 (515)
|++||+..........++...+.. .. .++.+...+..++.+....+..........|.+|++.+|++.|+.+..
T Consensus 320 r~g~r~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~ 393 (467)
T PRK09556 320 LANGRRALVACIALALIIFTLGVY-QH-----ATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTF 393 (467)
T ss_pred HHCCCchHHHHHHHHHHHHHHHHH-Hh-----cCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHH
Confidence 999988765544333332222211 11 222333333444444333222222235667999999999999999999
Q ss_pred HHH-HHHHHHHHHHHHHh------------hhchhHHHHHHHHHHHHHHHHHH
Q psy15227 394 LAF-GSFITTKFHILITK------------SLGQHVIFFIYSSVHFCSVVFNY 433 (515)
Q Consensus 394 ~~l-g~~~~~~~~g~l~~------------~~g~~~~~~~~~~~~~~~~~~~~ 433 (515)
.++ |.+++|.+.|.+.| ..||+..|.+.+++++++.+..+
T Consensus 394 g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 446 (467)
T PRK09556 394 AYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMA 446 (467)
T ss_pred HHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHH
Confidence 997 77999999999999 67888888888777777766553
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-35 Score=290.09 Aligned_cols=370 Identities=13% Similarity=0.118 Sum_probs=274.3
Q ss_pred hhHHHHHHHHHHHHHHhhhhhccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhH
Q psy15227 8 YVYQIIATNTASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKT 87 (515)
Q Consensus 8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~ 87 (515)
++++|.....+.+..+..........+.+|.+.+ ++| .|+.+.|++.+.+.+++.+++++.|+++||+|||+
T Consensus 4 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~---~~~-----~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~ 75 (390)
T PRK03545 4 RKVAWLRVVTLALAAFIFNTTEFVPVGLLSDIAQ---SFH-----MQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRK 75 (390)
T ss_pred cccchHHHHHHHHHHHHHHhHHHHHHcchHHHHh---HcC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHH
Confidence 3445555555555555544444455666787765 589 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhhhHHHHHHHHHhhH
Q psy15227 88 TLLLNALLCLPTWFLVVSN-KIECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNH 166 (515)
Q Consensus 88 ~l~~~~~l~~i~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~ 166 (515)
++..+.++..++++.++++ |++.++++|+++|++.+...+...+++.|++|+++|++++++...+.++|..++|.++..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~ 155 (390)
T PRK03545 76 LLIGLFVLFIASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRV 155 (390)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHH
Confidence 9999999999999999999 999999999999999999999999999999999999999999999999999998888755
Q ss_pred H----HhHHHHHhhhHHHHHHHHHhh-cccCcchhhhhcCChhHHHHHHHhhcCCCcChHHHHHHHHHHhhhhhhchhhh
Q psy15227 167 V----SYNSLNIALSILPVIFFILFS-FVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGY 241 (515)
Q Consensus 167 l----~wr~~f~i~~~~~~~~~~~~~-~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (515)
+ +||+.|++.++++++..+..+ .+||.|+. + + .+..+.
T Consensus 156 l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~-----~-~-------------------------------~~~~~~ 198 (390)
T PRK03545 156 IGQYLGWRTTFLAIGGGALITLLLLIKLLPLLPSE-----H-S-------------------------------GSLKSL 198 (390)
T ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCCCC-----C-c-------------------------------chHHHH
Confidence 4 999999999988876655544 35664320 0 0 000123
Q ss_pred hhhhccccchhHHHHHHHHHHHHHhhchHHHHHHHHhhhcc-cCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchh
Q psy15227 242 LELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPK-LDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPL 320 (515)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~ 320 (515)
++.++++..+......+.... .......+.+.++++ .|.+..+.+.......++.++++++.+++.||++||..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~ 273 (390)
T PRK03545 199 PLLFRRPALVSLYLLTVVVVT-----AHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFL 273 (390)
T ss_pred HHHHhCcHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHH
Confidence 355665543332222211111 122233445545444 58887788888888999999999999999999998765
Q ss_pred HHHhhHHHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHH
Q psy15227 321 SCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFI 400 (515)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~ 400 (515)
.. +..+...+...+... .++.+..++...+.+.+.....+.....+.|..| +.|+++.|+.+...++|..+
T Consensus 274 ~~-~~~~~~~~~~~l~~~-------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~ 344 (390)
T PRK03545 274 LI-AIALLLVCLLLLLPA-------ANSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGA 344 (390)
T ss_pred HH-HHHHHHHHHHHHHHH-------hchHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHH
Confidence 43 333333333322211 2334445555666666665555556677778766 57899999999999999999
Q ss_pred HHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHh
Q psy15227 401 TTKFHILITKSLGQHVIFFIYSSVHFCSVVFNYFYL 436 (515)
Q Consensus 401 ~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 436 (515)
+|.+.|.+.|+.|++..+...+++.+++.+......
T Consensus 345 G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
T PRK03545 345 GALLGNQVSLHLGLSSIGYVGAALALAALVWSILIF 380 (390)
T ss_pred HHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999888888888777664443
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-35 Score=292.27 Aligned_cols=389 Identities=14% Similarity=0.142 Sum_probs=281.8
Q ss_pred ccccchhHHHHHHHHHHHHHHhhhhhccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhh
Q psy15227 3 VFKRSYVYQIIATNTASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEK 82 (515)
Q Consensus 3 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr 82 (515)
..++.++++|.....+.++.+.++++....++..|.+.+ +++ .++.+.+++.+.+.++..+++++.|+++||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~-----~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr 73 (405)
T TIGR00891 2 WYRHLTRAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAG---EFG-----LTTVDAASLISAALISRWFGALMFGLWGDR 73 (405)
T ss_pred CCCcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhC-----CChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888999999999999999999999999998866 588 999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhhhHHHHHHH
Q psy15227 83 IGRKTTLLLNALLCLPTWFLVVSN-KIECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAIL 161 (515)
Q Consensus 83 ~Grr~~l~~~~~l~~i~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~ 161 (515)
+|||+++..+.++.+++.+++.++ +++.+++.|++.|++.+...+...+++.|++|+++|+++.++.+.+..+|..+++
T Consensus 74 ~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 153 (405)
T TIGR00891 74 YGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAA 153 (405)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999 9999999999999999999999999999999999999999999999999999998
Q ss_pred HHhhHH----H--hHHHHHhhhHHHHHHHHHhhcccCcchhhhhcCChhHHHHHHHhhcCCCcChHHHHHHHHHHhhhhh
Q psy15227 162 LIGNHV----S--YNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDL 235 (515)
Q Consensus 162 ~l~~~l----~--wr~~f~i~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (515)
.++..+ + ||+.|++.++..++..+....+||++++...+++.++..+..++..+.++..+.. .+
T Consensus 154 ~l~~~l~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~ 223 (405)
T TIGR00891 154 QVYSLVVPVWGDGWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRIANI----------VM 223 (405)
T ss_pred HHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccchhhhhh----------hh
Confidence 887654 4 9999998777766665555668998765433222211111111111100000000 00
Q ss_pred hchhhhhhhhccccchhHHHHHHHHHHHHHhhchHHHHHHHHhhhc-ccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhh
Q psy15227 236 KSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLP-KLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDI 314 (515)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 314 (515)
+...+.++..+ ..+...........+... .......+.|.++. +.|.+..+.+.......++.+++.++.+++.||
T Consensus 224 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr 300 (405)
T TIGR00891 224 TLAAAMVQSAG--KRWPTFVYLVVLVLFANL-YSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDW 300 (405)
T ss_pred hhhHHhhhhhh--hhhHHHHHHHHHHHHHHH-HHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00001111111 112112112222222121 12233445566554 468887788888888999999999999999999
Q ss_pred hCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHH
Q psy15227 315 LGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVAL 394 (515)
Q Consensus 315 ~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~ 394 (515)
++||+.+..+.....+....... . ..+.+...+...+.+....+..+....++.|.+|++.|+++.|+.+...
T Consensus 301 ~g~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 373 (405)
T TIGR00891 301 LGRRKAYVCSLLAGQLLIIPVFA--I-----GANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLG 373 (405)
T ss_pred hCchhhhHHHHHHHHHHHHHHHH--h-----CCchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHH
Confidence 99999887766654333222211 1 2233333333344444445555666788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhc-hhHHHH
Q psy15227 395 AFGSFITTKFHILITKSLG-QHVIFF 419 (515)
Q Consensus 395 ~lg~~~~~~~~g~l~~~~g-~~~~~~ 419 (515)
+++..++|.+.|.+.|+.| +...+.
T Consensus 374 ~~g~~~g~~~~g~l~~~~g~~~~~~~ 399 (405)
T TIGR00891 374 NLGGALAPIIGALLAQRLDEYGTALA 399 (405)
T ss_pred HHHHHHHHHHHHHHHHhccccchhHH
Confidence 9999999999999999998 654333
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=296.02 Aligned_cols=394 Identities=11% Similarity=0.044 Sum_probs=275.3
Q ss_pred hHHHHHHHHHHHHHHhhhhhccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHH
Q psy15227 9 VYQIIATNTASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTT 88 (515)
Q Consensus 9 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~ 88 (515)
++++.+.....++.+...++....+..+|.+.+ ++| .|..+.|++.+.+.+++.+++++.|+++||+|||++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g-----~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~ 90 (434)
T PRK11663 19 YWRRHILITMYLGYALFYFTRKSFNAAMPEMLA---DLG-----LSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYF 90 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHhhHHHHH---hcC-----CCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchh
Confidence 445566666777777777777777888888865 588 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhh-hhhHHHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhhhHHHHHHHHHhhHH
Q psy15227 89 LLLNALLCLPTWFLVVSN-KIECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHV 167 (515)
Q Consensus 89 l~~~~~l~~i~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~l 167 (515)
+.++.++.+++.++++++ +++.+++.|++.|++.|...+...+++.|++|+++|++++++.+.+.++|..+++.+.+.+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l 170 (434)
T PRK11663 91 MGIGLIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAI 170 (434)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 9999999999999999999999999999999999999999999999999999998877655
Q ss_pred ----HhHHHHHhhhHHHHHHHHH-hhcccCcchhhhhcCChhHHHHHHHhhcCCCcChHHHHHHHHHHhhhhhhchhhhh
Q psy15227 168 ----SYNSLNIALSILPVIFFIL-FSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGYL 242 (515)
Q Consensus 168 ----~wr~~f~i~~~~~~~~~~~-~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (515)
+||+.|++.+++.++..+. .+++||+|++...+...++.++ ..+ .. ++.++++.+.+
T Consensus 171 ~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-----------~~~---~~----~~~~~~~~~~~ 232 (434)
T PRK11663 171 ALHYGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHD-----------ALE---LA----QQQEGAGLSRK 232 (434)
T ss_pred HHcccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCccccccc-----------ccc---cc----hhccccCCChh
Confidence 8999999988877655443 3457888754311110000000 000 00 00000011122
Q ss_pred h-----hhccccchhHHHHHHHHHHHHHhhchHHHHHHHHhhh-cccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhh-
Q psy15227 243 E-----LLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLL-PKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDIL- 315 (515)
Q Consensus 243 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~- 315 (515)
+ .++++..+ .+....+...........+.|.++ ++.|++..+++.......++..+++++.|+++||+
T Consensus 233 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~ 307 (434)
T PRK11663 233 EILTKYVLLNPYIW-----LLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLF 307 (434)
T ss_pred hhHHHHHhcChHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhc
Confidence 2 23333222 222222222223455667888887 45688888888888899999999999999999998
Q ss_pred -CCchhH-HHhhHHHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHH
Q psy15227 316 -GRKPLS-CFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVA 393 (515)
Q Consensus 316 -grr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~ 393 (515)
++|+.. ........+....+... . ..+...........+++..+..........|.+|++.|+++.|+.+..
T Consensus 308 ~~~r~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 381 (434)
T PRK11663 308 NGNRGPMNLIFAAGILLSVGSLWLM-P-----FASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLF 381 (434)
T ss_pred cCCccHHHHHHHHHHHHHHHHHHHc-c-----cccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHH
Confidence 333332 22111212121111110 0 111122222222222222222223345678999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHhhcc
Q psy15227 394 LAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFNYFYLMET 439 (515)
Q Consensus 394 ~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (515)
.++|.+++|.+.|.+.|+.|+...|...+++++++.+..+...+++
T Consensus 382 ~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~ 427 (434)
T PRK11663 382 AYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFLNAQ 427 (434)
T ss_pred HHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999988888887776654444433
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=290.25 Aligned_cols=380 Identities=18% Similarity=0.132 Sum_probs=256.1
Q ss_pred ccchhHHHHHHHHHHHHHHhhhhhccchhhhhhcccCCCCcccccccccchhhH---HHHHHHHHHHhhhhhhhHhhhhh
Q psy15227 5 KRSYVYQIIATNTASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQL---SWMVSLLDLGNAISPIFAGILVE 81 (515)
Q Consensus 5 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~---~~~~s~~~lg~~i~~~~~G~l~D 81 (515)
+.++++++..+...+++.+++.+|....+...|.+.++ ++.. +.+..+. +.+.+..+++..++++++|+++|
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~D 88 (432)
T PRK10406 14 SSDTRRRIWAIVGASSGNLVEWFDFYVYSFCSLYFAHI---FFPS--GNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIAD 88 (432)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCC--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777788888999999999999888888663 4200 0344443 34445555666699999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhh-hhh--------HHHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchh
Q psy15227 82 KIGRKTTLLLNALLCLPTWFLVVSN-KIE--------CLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGF 152 (515)
Q Consensus 82 r~Grr~~l~~~~~l~~i~~~~~~~~-~~~--------~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~ 152 (515)
|+|||+++..+.+++++++++++++ ++. .+++.|+++|++.|+.++...+++.|++|+++|+++.++.+.+
T Consensus 89 r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~ 168 (432)
T PRK10406 89 KHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVT 168 (432)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHH
Confidence 9999999999999999999999998 764 6889999999999999999999999999999999999998888
Q ss_pred hhHHHHHHHHHhh------------HHHhHHHHHhhhHHHHHHHHHhhcccCcchhhhhcCChhHHHHHHHhhcCCCcCh
Q psy15227 153 QMVGTLAILLIGN------------HVSYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDV 220 (515)
Q Consensus 153 ~~lG~~~~~~l~~------------~l~wr~~f~i~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (515)
...|.++++.+.. ..|||++|++.++++++.......+||+|++..+
T Consensus 169 ~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~~--------------------- 227 (432)
T PRK10406 169 LIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQETR--------------------- 227 (432)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHHHh---------------------
Confidence 8888777765432 3489999999888887766555567887643100
Q ss_pred HHHHHHHHHHhhhhhhchhhhhhhhccccchhHHHHHHHHHHHHHhhchHHHHHHHHhhhcc-cCCCCCCcchhHHHHHH
Q psy15227 221 MEEMNSIMDKTQEDLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPK-LDNAYFGPDQCILVFMI 299 (515)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~ 299 (515)
+.+++.++++++++++.+ ... ....+......+....|.|.++.+ .|.+..+.+.......+
T Consensus 228 -------------~~~~~~~~~~l~~~~~~~---~~~-~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~ 290 (432)
T PRK10406 228 -------------ALKEAGSLKGLWRNRRAF---IMV-LGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALF 290 (432)
T ss_pred -------------hhcccccHHHHHhhHHHH---HHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 000112355666543222 111 111222122345566788887754 58776666777777777
Q ss_pred HHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhccccc
Q psy15227 300 IMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFP 379 (515)
Q Consensus 300 ~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p 379 (515)
...++.++.|+++||++||+.+.....+.++....+..... . .++.+.......+.........+....+.+|.+|
T Consensus 291 ~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp 366 (432)
T PRK10406 291 VFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQ-N---VSSPYAAFGLVMCALLIVSFYTSISGILKAEMFP 366 (432)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH-c---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 78888899999999999998876655543333222211111 0 1112222211211212222333455678899999
Q ss_pred chhhhhhhhHHHHHHHH-HHHHHHHHHHHHHhhhc-hhHHHHHHHHHHHHHHHHH
Q psy15227 380 INVRCQASSCASVALAF-GSFITTKFHILITKSLG-QHVIFFIYSSVHFCSVVFN 432 (515)
Q Consensus 380 ~~~r~~~~g~~~~~~~l-g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~ 432 (515)
++.|+++.|+.+...++ ++...|.+.+.+ +..| +...++..++..+++.+..
T Consensus 367 ~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l-~~~g~~~~~~~~~~~~~~i~~~~~ 420 (432)
T PRK10406 367 AQVRALGVGLSYAVANALFGGSAEYVALSL-KSIGMETAFFWYVTLMAVVAFLVS 420 (432)
T ss_pred CCccchhhhHHHHHHHHHHHhHHHHHHHHH-HHhCCCcHHHHHHHHHHHHHHHHH
Confidence 99999999999887665 344577777744 5556 3334444555555554444
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=289.33 Aligned_cols=407 Identities=13% Similarity=0.091 Sum_probs=278.8
Q ss_pred chhHHHHHHHHHHHHHHhhhhhccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhh
Q psy15227 7 SYVYQIIATNTASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRK 86 (515)
Q Consensus 7 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr 86 (515)
.++++|.....+.++.+.+.++....++.+|.+.+ ++| +|+.+.+++.+.+.+++.+++++.|+++||+|||
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~-----~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r 85 (496)
T PRK03893 14 LNRAQWKAFSAAWLGYLLDGFDFVLITLVLTEVQG---EFG-----LTTVQAASLISAAFISRWFGGLLLGAMGDRYGRR 85 (496)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH
Confidence 34567778888888999999999999999998865 588 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhhhHHHHHHHHHhh
Q psy15227 87 TTLLLNALLCLPTWFLVVSN-KIECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGN 165 (515)
Q Consensus 87 ~~l~~~~~l~~i~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~ 165 (515)
+++..+.++.+++.++++++ +++.+++.|++.|++.+...+....++.|++|+++|++++++...+..+|..+++.+..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 165 (496)
T PRK03893 86 LAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYS 165 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 99999999999999999999999999999999999999999999999999999988876
Q ss_pred HH----HhHHHHHhhhHHHHHHHHHhhcccCcchhhhhcCChhHHHHHHHhhcCCCcChHHHHHHHHH--Hh--hhhhhc
Q psy15227 166 HV----SYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMD--KT--QEDLKS 237 (515)
Q Consensus 166 ~l----~wr~~f~i~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~ 237 (515)
.+ +||+.|++..+..++.++.....||++++..++++.++..+..+.....+............ .. .-....
T Consensus 166 ~l~~~~~w~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (496)
T PRK03893 166 LVVPVWGWRALFFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRIINILLTLAAAAALWFCFAGNL 245 (496)
T ss_pred HHhccCCHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhccccccchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 65 89999987655544444444457887765433222111111111110000000000000000 00 000000
Q ss_pred hhhh-------------h-hhhccccchhHHHHHHHHHHHHHhhchHHHHHHHHhhhc-ccCCCCCCcchhHHHHHHHHH
Q psy15227 238 KTGY-------------L-ELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLP-KLDNAYFGPDQCILVFMIIMF 302 (515)
Q Consensus 238 ~~~~-------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~ 302 (515)
...+ . -..+.+..+++.........+...........+.|.+++ +.|++..+.+.......++.+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~ 325 (496)
T PRK03893 246 QNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAA 325 (496)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Confidence 0000 0 000000011111111111111111112234567788884 678888888999999999999
Q ss_pred HHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchh
Q psy15227 303 LSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINV 382 (515)
Q Consensus 303 ~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~ 382 (515)
++.++.|+++||++||+.+..+..+..+..+.+... . ....+.......+.+....+..+...+++.|.+|++.
T Consensus 326 ~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (496)
T PRK03893 326 VGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAI-G-----GANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQ 399 (496)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhc-c-----ccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHH
Confidence 999999999999999998877665555444332220 0 1111222222222222233444556678899999999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHH
Q psy15227 383 RCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFC 427 (515)
Q Consensus 383 r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~ 427 (515)
|++++|+.+....+|+.++|.+.|.+.|+.|+...+...++.+.+
T Consensus 400 ~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~~ 444 (496)
T PRK03893 400 RAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLTF 444 (496)
T ss_pred hhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988776655544433
|
|
| >KOG0253|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-34 Score=256.92 Aligned_cols=415 Identities=16% Similarity=0.163 Sum_probs=310.9
Q ss_pred chhHHHHHHHHHHHHHHhhhhhccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhh
Q psy15227 7 SYVYQIIATNTASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRK 86 (515)
Q Consensus 7 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr 86 (515)
..+.||...+....+...+.+..-..+-+.|.+.. .++ .+..|..++......|..+++..+|.++|++|||
T Consensus 72 fgrfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~---~w~-----~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr 143 (528)
T KOG0253|consen 72 FGRFQWYLFFVAGMGWMADAMEMMLLSLILPALDE---VWG-----PSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRR 143 (528)
T ss_pred cccchhhHHHHhhhHHHHHHHHHHHHHHHHHHHHh---hhc-----hhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcc
Confidence 34567777777776666666655555556665544 367 8999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhhhHHHHHHHHHhh
Q psy15227 87 TTLLLNALLCLPTWFLVVSN-KIECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGN 165 (515)
Q Consensus 87 ~~l~~~~~l~~i~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~ 165 (515)
+.+.+.....++...+.+.+ |+..+.+.|.+.|+|.|+ .|...++-.|.-|..+|..-+-.. ..+.+|.+....++.
T Consensus 144 ~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law 221 (528)
T KOG0253|consen 144 KGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAW 221 (528)
T ss_pred hhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHH
Confidence 99999999999999999999 999999999999999999 788888889999999888876666 888888888777664
Q ss_pred ----HHHhHHHHHhhhHHHHHHHHHhhcccCcchhhhhcCChhHHHHHHHhhcCCCcC----------hHHHHHH----H
Q psy15227 166 ----HVSYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKD----------VMEEMNS----I 227 (515)
Q Consensus 166 ----~l~wr~~f~i~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~----~ 227 (515)
.+||||.......+..+.+...+++|||||++..+++++++.+.++++.+.|.. ..++.++ .
T Consensus 222 ~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~ 301 (528)
T KOG0253|consen 222 GVMSNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDL 301 (528)
T ss_pred HHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhch
Confidence 449999999988888888888889999999999999999999998888655432 0000000 0
Q ss_pred HHHh-hhhhhchhhhhhhhccccchhHHHHHHHHHHHHHhhchHHHHHHHHhhhcccC--------------------CC
Q psy15227 228 MDKT-QEDLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLD--------------------NA 286 (515)
Q Consensus 228 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--------------------~~ 286 (515)
.+.. +..++...+..+++. |+.++..+.....++...+. ++........+++... .+
T Consensus 302 ~~~~~~a~ke~rg~~~nLls-p~lrkttlllw~iwfgnafs-yyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s 379 (528)
T KOG0253|consen 302 DDSKSSAAKEVRGGTTNLLS-PKLRKTTLLLWRIWFGNAFS-YYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLS 379 (528)
T ss_pred hhhhhccccccccchHhhcC-hHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCcc
Confidence 0000 111222334555665 45666666665555554433 2333333333332211 11
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhcc
Q psy15227 287 YFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGI 366 (515)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 366 (515)
......-..+..+..++|.++.+++.||+|||+++..+.++.+++.+++.. ........+..+...++..+.
T Consensus 380 ~~~dYrdllitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~--------c~~rn~~tvllf~arafisg~ 451 (528)
T KOG0253|consen 380 VAKDYRDLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTT--------CKTRNAYTVLLFTARAFISGA 451 (528)
T ss_pred chhHHHHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHH--------hcCcchhHHHHHHHHHHHhch
Confidence 112223355677889999999999999999999999999998888877765 334444445555555555777
Q ss_pred cchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHhhcccccc
Q psy15227 367 GCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFNYFYLMETKQKT 443 (515)
Q Consensus 367 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (515)
+.+.++|..|++|+..|+++.|.+...+++|+++.|.+. +........+..+++++++++.++..++-.|+++|.
T Consensus 452 fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiEtkGR~ 526 (528)
T KOG0253|consen 452 FQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFPIETKGRS 526 (528)
T ss_pred heEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheeeeeccCCCC
Confidence 778899999999999999999999999999999999988 433344456888899999999888877777888775
|
|
| >KOG0252|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-35 Score=272.32 Aligned_cols=434 Identities=16% Similarity=0.155 Sum_probs=311.9
Q ss_pred chhHHHHHHHHHHHHHHhhhhhccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhh
Q psy15227 7 SYVYQIIATNTASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRK 86 (515)
Q Consensus 7 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr 86 (515)
..|+....+.+...+.|.|+||...++.+.|.+.....+-.+.+.+.++...+.+..+..+|.++|++++|+++||+|||
T Consensus 35 ~qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK 114 (538)
T KOG0252|consen 35 LQWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRK 114 (538)
T ss_pred hhHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcch
Confidence 47788888899999999999999999888886644311111111236777789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhh-h-------hhHHHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhhhHHHH
Q psy15227 87 TTLLLNALLCLPTWFLVVSN-K-------IECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTL 158 (515)
Q Consensus 87 ~~l~~~~~l~~i~~~~~~~~-~-------~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ 158 (515)
+++...++++.+++++++++ . .+++...|++.|+|.|+.+|.+.+..+|...++.||...+..-+..+.|..
T Consensus 115 ~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~Gil 194 (538)
T KOG0252|consen 115 KVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGIL 194 (538)
T ss_pred hhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHh
Confidence 99999999999999988876 1 568889999999999999999999999999999999999999988888888
Q ss_pred HHHHHhhHH-------------------HhHHHHHhhhHHHHHHHHHhhcccCcchhhhhcCCh-hHHHHHHHhhcCCCc
Q psy15227 159 AILLIGNHV-------------------SYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNL-KKTEKSLKWYRGNKK 218 (515)
Q Consensus 159 ~~~~l~~~l-------------------~wr~~f~i~~~~~~~~~~~~~~~pesp~~~~~~~~~-~~~~~~~~~~~~~~~ 218 (515)
.|.+++-.+ -||..+.+.+++++..+...+.+|||+++.....++ +++. +...+...
T Consensus 195 aG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~---~d~~k~~~ 271 (538)
T KOG0252|consen 195 AGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAA---GDMKKVLS 271 (538)
T ss_pred hccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhh---hccccccc
Confidence 877666433 399999999999999888888899999986433322 2222 11111111
Q ss_pred ChHHHHHHHHHHhhhhh---hchhhhhhhhccccchhHHHHHHHHHHHHHhhchHHHHHHHHhhhcccCCCCCCcch---
Q psy15227 219 DVMEEMNSIMDKTQEDL---KSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQ--- 292 (515)
Q Consensus 219 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--- 292 (515)
. +.++..+...... .....+.+.+... .-+.++..+..++... ...+....+...+++..|..+.+...
T Consensus 272 ~---~~~~~~~~~~~~~~~~~~~~~F~~~f~~~-hg~~Llgt~~~WFllD-iafy~~nL~~s~I~~~ig~~~~~~~~~~~ 346 (538)
T KOG0252|consen 272 V---DIEAESTAESDVPPPSNSFGLFSRLFLRW-HGKHLLGTAGTWFLLD-IAFYGQNLFQSVIFSAIGVIPSANTYHEL 346 (538)
T ss_pred c---ccchhhccccCCCCcccccchHHHHHHHH-HHHHHHHHHHHHHhhh-hhhhccccHHHHHHHhhccCCCcchHHHH
Confidence 0 0111011001111 1111122333221 2234444444444443 34566677777888877766544433
Q ss_pred -----hH-HHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhcc
Q psy15227 293 -----CI-LVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGI 366 (515)
Q Consensus 293 -----~~-~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 366 (515)
.. .+.....++|.++...++|++|||+..+.++.++.+..+.++..+.. ........+...+.+.++..+.
T Consensus 347 ~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~---~~~~~Gf~v~y~l~~ff~NFGP 423 (538)
T KOG0252|consen 347 FKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQ---LENTIGFVVLYSLTFFFGNFGP 423 (538)
T ss_pred HHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCccc---ccccCceeehHHHHHHHHhcCC
Confidence 11 12223334466777788999999999999999999988887764331 1111222222223333333777
Q ss_pred cchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHh-----hhchhHHHHHHHHHHHHHHHHHHHHhhcccc
Q psy15227 367 GCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITK-----SLGQHVIFFIYSSVHFCSVVFNYFYLMETKQ 441 (515)
Q Consensus 367 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (515)
......+.+|.+|++.|+++.|+..+++-.|++++...+.++.+ ..|.+.++++++++++++.+.. +++||+++
T Consensus 424 n~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T-~l~pEtk~ 502 (538)
T KOG0252|consen 424 NATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFT-LLIPETKG 502 (538)
T ss_pred CceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHhee-EEeecccc
Confidence 77777899999999999999999999999999999999999999 7788899999999999988876 55679999
Q ss_pred ccHHHHHHHHh
Q psy15227 442 KTLAEIQESIM 452 (515)
Q Consensus 442 ~~~~~~~~~~~ 452 (515)
++++|.+++.+
T Consensus 503 ~~leei~~e~~ 513 (538)
T KOG0252|consen 503 KSLEEISNEEE 513 (538)
T ss_pred cCHHHhcChhh
Confidence 99998854433
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=277.21 Aligned_cols=375 Identities=9% Similarity=0.014 Sum_probs=271.7
Q ss_pred hhHHHHHHHHHHHHHHhhhhhccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhH
Q psy15227 8 YVYQIIATNTASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKT 87 (515)
Q Consensus 8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~ 87 (515)
....|......+++.+..... ...++.+|.+.+ |++ +|.++.+++.+.+.+++.+++++.|+++||+|||+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~lp~i~~---~~~-----~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~ 75 (393)
T PRK09705 5 FPLNFMLLVLVLIGLNMRPLL-TSVGPLLPQLRQ---ASG-----MSFSVAALLTALPVVTMGGLALAGSWLHQHVSERR 75 (393)
T ss_pred cchHHHHHHHHHHHHHcchhh-hccchhHHHHHH---HhC-----CCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchH
Confidence 334555556666665554444 556688888866 599 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhhhHHHHHHHHHhhH
Q psy15227 88 TLLLNALLCLPTWFLVVSN-KIECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNH 166 (515)
Q Consensus 88 ~l~~~~~l~~i~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~ 166 (515)
++..+..+++++.++++++ +++.++++|+++|++.+...+....++.|++| ++|+++++++..+..+|..+++.++..
T Consensus 76 ~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~ 154 (393)
T PRK09705 76 SVAISLLLIAVGALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPW 154 (393)
T ss_pred HHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 99999999999999999999999999999997 679999999998877777777766654
Q ss_pred H-----HhHHHHHhhhHHHHHHHHHhhcc-cCcchhhhhcCChhHHHHHHHhhcCCCcChHHHHHHHHHHhhhhhhchhh
Q psy15227 167 V-----SYNSLNIALSILPVIFFILFSFV-PETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTG 240 (515)
Q Consensus 167 l-----~wr~~f~i~~~~~~~~~~~~~~~-pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (515)
+ +||+.+.+.++..++..+..+.. ++.|+ ++ +++ +.+
T Consensus 155 l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~---------------------------~~~--~~~ 197 (393)
T PRK09705 155 LVQHSETWYQTLAWWALPAVVALFAWWWQSAREVA--------SS---------------------------HKT--TTT 197 (393)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHHHHhcCCCc--------cc---------------------------cCC--CcC
Confidence 3 79998877666554433332222 11110 00 000 001
Q ss_pred hhhhhccccchhHHHHHHHHHHHHHhhchHHHHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchh
Q psy15227 241 YLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPL 320 (515)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~ 320 (515)
.++.++++..+. . ..........+.....+.|.++++.|.+..+.+.......++.++++++.+++.||.+||+.
T Consensus 198 ~~~~l~~~~~~~----l-~~~~~~~~~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~ 272 (393)
T PRK09705 198 PVRVVFTPRAWT----L-GVYFGLINGGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKL 272 (393)
T ss_pred CcccccCHhHHH----H-HHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHH
Confidence 122333332221 1 11222222345567778888888889988889999999999999999999999999999998
Q ss_pred HHHhhHHHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhccccc-chhhhhhhhHHHHHHHHHHH
Q psy15227 321 SCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFP-INVRCQASSCASVALAFGSF 399 (515)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p-~~~r~~~~g~~~~~~~lg~~ 399 (515)
...+..+..++...+... ..+... ....+.+.+.+...+.......+..+ ++.++++.|+.+...+++..
T Consensus 273 ~~~~~~l~~~~~~~~~~~-------~~~~~~--~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~ 343 (393)
T PRK09705 273 LMLALVLQLVGFCGFIWL-------PLQLPV--LWAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAG 343 (393)
T ss_pred HHHHHHHHHHHHHHHHHc-------cchHHH--HHHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 888776666665544321 111111 22234445555555555555566664 67899999999999999999
Q ss_pred HHHHHHHHHHhhhc-hhHHHHHHHHHHHHHHHHHHHHhhcccccc
Q psy15227 400 ITTKFHILITKSLG-QHVIFFIYSSVHFCSVVFNYFYLMETKQKT 443 (515)
Q Consensus 400 ~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (515)
++|.+.|++.|..| +...+.+.++++++..++...+.+|++++.
T Consensus 344 ~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (393)
T PRK09705 344 LAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARFPQL 388 (393)
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccccch
Confidence 99999999999987 556666666666666666666667766544
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-33 Score=279.37 Aligned_cols=385 Identities=13% Similarity=0.073 Sum_probs=259.9
Q ss_pred hHHHHHHHHHHHHHHhhhhhccchhhhhhcccCCCCcc-cccccccchhhHHHHH-----HHHHHHhhhhhhhHhhhhhh
Q psy15227 9 VYQIIATNTASISLLIAGCWIAWPSVMIKRLTDENPDL-ENIGIRLNKYQLSWMV-----SLLDLGNAISPIFAGILVEK 82 (515)
Q Consensus 9 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~s~~~~~~~~-----s~~~lg~~i~~~~~G~l~Dr 82 (515)
.+++.......++.+.+.+|....+...|.+..+ +.+ + .++. .+++. ++.+++..+++++.|+++||
T Consensus 18 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr 90 (438)
T PRK09952 18 SRARRAALGSFAGAVVDWYDFLLYGITAALVFNR-EFFPQ-----VSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDR 90 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCC-----CCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 3455677777888899999999988776643221 012 3 4444 34443 35567788999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhh-hhh--------HHHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhh
Q psy15227 83 IGRKTTLLLNALLCLPTWFLVVSN-KIE--------CLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQ 153 (515)
Q Consensus 83 ~Grr~~l~~~~~l~~i~~~~~~~~-~~~--------~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~ 153 (515)
+|||+++..+.+++++++++++++ +++ .++++|+++|++.|..++....++.|++|+++|++..+..+.+.
T Consensus 91 ~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~ 170 (438)
T PRK09952 91 LGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGY 170 (438)
T ss_pred hccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHH
Confidence 999999999999999999999999 876 58889999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhh------------HHHhHHHHHhhhHHHHHHHHHhhcccCcchhhhhcCChhHHHHHHHhhcCCCcChH
Q psy15227 154 MVGTLAILLIGN------------HVSYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVM 221 (515)
Q Consensus 154 ~lG~~~~~~l~~------------~l~wr~~f~i~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (515)
.+|.+++..+.. ..+||++|++.+++.++........||+|+|...+++.++
T Consensus 171 ~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~~~---------------- 234 (438)
T PRK09952 171 GVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQAA---------------- 234 (438)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhccc----------------
Confidence 999988865543 2489999999888766554444457898876432211100
Q ss_pred HHHHHHHHHhhhhhhchhhhh-hhhccccchhHHHHHHHHHHHHHhhchHHHHHHHHhhhcc-cCCCCCCcchhHHHHHH
Q psy15227 222 EEMNSIMDKTQEDLKSKTGYL-ELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPK-LDNAYFGPDQCILVFMI 299 (515)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~ 299 (515)
.+++.+.. .++++++.+. ....... ......+....+.|.++++ .|.+...........++
T Consensus 235 -------------~~~~~~~~~~l~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~ 297 (438)
T PRK09952 235 -------------AKKRIPVIEALLRHPGAFL---KIIALRL-CELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGG 297 (438)
T ss_pred -------------ccccCCHHHHHHHchHHHH---HHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 00001111 2333322221 1111111 2222344555677776643 56664333334445566
Q ss_pred HHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhccccc
Q psy15227 300 IMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFP 379 (515)
Q Consensus 300 ~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p 379 (515)
..+++.++.|+++||+|||+.+..+.++..++...+..... ..+..+......++.+++.....+..+++.+|.+|
T Consensus 298 ~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p 373 (438)
T PRK09952 298 LSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALE----AQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFG 373 (438)
T ss_pred HHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 77888899999999999999887776655444333222111 01222222333334444445555666789999999
Q ss_pred chhhhhhhhHHHHHH-HHHHHHHHHHHHHHHhhh--chhHHHHHHHHHHHHHHHHHHHHhhc
Q psy15227 380 INVRCQASSCASVAL-AFGSFITTKFHILITKSL--GQHVIFFIYSSVHFCSVVFNYFYLME 438 (515)
Q Consensus 380 ~~~r~~~~g~~~~~~-~lg~~~~~~~~g~l~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (515)
++.|+++.|+.+... .+++.++|.+.+++.+.. +|...+...+++.+++.+.. +..++
T Consensus 374 ~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~-~~~~~ 434 (438)
T PRK09952 374 ASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTA-LLMKD 434 (438)
T ss_pred cchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHH-HHccc
Confidence 999999999976654 489999999999998854 35566666666666665554 34444
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-33 Score=271.99 Aligned_cols=344 Identities=11% Similarity=0.041 Sum_probs=242.0
Q ss_pred cchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhh-hh
Q psy15227 30 AWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALLCLPTWFLVVSN-KI 108 (515)
Q Consensus 30 ~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~-~~ 108 (515)
...++.+|.+.+ |++ +|+.+.|++.+.+.+++.+++++.|+++||+|||+++..+......+.+..... ++
T Consensus 8 ~~~~~~lp~i~~---~~~-----~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~ 79 (368)
T TIGR00903 8 VTFSPVLSLVAE---DID-----VSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNY 79 (368)
T ss_pred HHHHhhHHHHHH---HhC-----cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccH
Confidence 345677887766 588 999999999999999999999999999999999998776665555554433444 89
Q ss_pred hHHHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhhhHHHHHHHHHhhHH----HhHHHHHhhhHHHHHHH
Q psy15227 109 ECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHV----SYNSLNIALSILPVIFF 184 (515)
Q Consensus 109 ~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~l----~wr~~f~i~~~~~~~~~ 184 (515)
+.+++.|+++|++.+. .+.....++|++|+++|++++++.+.+..+|..+++.++..+ +||+.|++.++++++..
T Consensus 80 ~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~ 158 (368)
T TIGR00903 80 EWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGI 158 (368)
T ss_pred HHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH
Confidence 9999999999999986 456667779999999999999999999999999998888776 99999999888877665
Q ss_pred HHhh-cccCcchhhhhcCChhHHHHHHHhhcCCCcChHHHHHHHHHHhhhhhhchhhhhhhhccccchhHHHHHHHHHHH
Q psy15227 185 ILFS-FVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGYLELLTNKSNRRAFTLVMAASLF 263 (515)
Q Consensus 185 ~~~~-~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (515)
+..+ ++||+|++..+ +.+ .+ + ...+++++++++..+. .....+
T Consensus 159 ~~~~~~lp~~p~~~~~--~~~---------------~~----~----------~~~~~~~ll~~~~~~~-----~~~~~~ 202 (368)
T TIGR00903 159 ILVLAALPALPFQAAE--GFG---------------FK----D----------AVKEFGALAGRKDLWI-----IGAILG 202 (368)
T ss_pred HHHHHHcCCCCCCCCC--Ccc---------------hH----H----------HHHHHHHHHcChhHHH-----HHHHHH
Confidence 5544 58998865210 000 00 0 0013556777654432 222233
Q ss_pred HHhhchHHHHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCc---hhHH-HhhHHHHHHHHHHHHHH
Q psy15227 264 QRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRK---PLSC-FSAALGCLLTFSTGLFY 339 (515)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr---~~~~-~~~~~~~~~~~~~~~~~ 339 (515)
+.....+.+..|.|.++++.|++. ..+.......+ .+.+..++++||..|| +... ....+.++....+..
T Consensus 203 ~~~~~~~~~~~wlp~~L~~~g~s~-~~~~~~~l~~~---~g~~g~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~-- 276 (368)
T TIGR00903 203 FGVALFDNLAIWLEAALRPAGLED-IAGDAVALAIL---AGLIGVAVIPDRVARAGLRSIYIRAAALLIAAFFLALAF-- 276 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCh-HHHHHHHHHHH---HHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHH--
Confidence 333445677889999998878763 34444444444 4444457888887643 3222 223333332222222
Q ss_pred HhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhchhHHHH
Q psy15227 340 LYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFF 419 (515)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~ 419 (515)
..+.+.......+.+++.....+..+++.+|.+|++.|+++.|+.+..+++++..+|.+.+.+.. +....|.
T Consensus 277 ------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~ 348 (368)
T TIGR00903 277 ------ELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFT 348 (368)
T ss_pred ------ccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHH
Confidence 22233333334444444455556677899999999999999999999999999999999988773 6666788
Q ss_pred HHHHHHHHHHHHH
Q psy15227 420 IYSSVHFCSVVFN 432 (515)
Q Consensus 420 ~~~~~~~~~~~~~ 432 (515)
++++..+++.+..
T Consensus 349 ~~~~~~~i~~~~~ 361 (368)
T TIGR00903 349 FLAILITIAFAIA 361 (368)
T ss_pred HHHHHHHHHHHHH
Confidence 8888877777665
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-33 Score=278.27 Aligned_cols=358 Identities=15% Similarity=0.149 Sum_probs=243.0
Q ss_pred HHHHHHHHHHHHHHhhhhhccchhhhhhcccCCCCcccccccccchhhHHHHH-HHH-----HHHhhhhhhhHhhhhhhh
Q psy15227 10 YQIIATNTASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMV-SLL-----DLGNAISPIFAGILVEKI 83 (515)
Q Consensus 10 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~-s~~-----~lg~~i~~~~~G~l~Dr~ 83 (515)
.++.....++++.+++.+|....+...|.+.+ +++ .++.+.+.+. +.. .++..+++++.|+++||+
T Consensus 12 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~---~~~-----~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~ 83 (434)
T PRK15075 12 SKARAILRVTSGNFLEMFDFFLFGFYATAIAK---TFF-----PAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRV 83 (434)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhC-----CCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhh
Confidence 44556788888999999999999999998876 477 7777765433 222 333357899999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhh-hhh--------HHHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhhh
Q psy15227 84 GRKTTLLLNALLCLPTWFLVVSN-KIE--------CLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQM 154 (515)
Q Consensus 84 Grr~~l~~~~~l~~i~~~~~~~~-~~~--------~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~ 154 (515)
|||+.++.+.+++.+++++++++ +++ .++++|+++|++.+...+....++.|++|+++|++++++...+..
T Consensus 84 Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~ 163 (434)
T PRK15075 84 GRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQ 163 (434)
T ss_pred chHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHH
Confidence 99999999999999999999999 876 468899999999999999999999999999999999999888777
Q ss_pred HHHHHHHHHhhH------------HHhHHHHHhhhHHHHHHHHHhhcccCcchhhhhcCChhHHHHHHHhhcCCCcChHH
Q psy15227 155 VGTLAILLIGNH------------VSYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVME 222 (515)
Q Consensus 155 lG~~~~~~l~~~------------l~wr~~f~i~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (515)
+|..+++.++.. +|||++|++..+...+........||++++..+++
T Consensus 164 ~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~--------------------- 222 (434)
T PRK15075 164 VAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPFIFLIRRSLEETEEFLARKH--------------------- 222 (434)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhh---------------------
Confidence 766665555432 48999998765443222222222344322110000
Q ss_pred HHHHHHHHhhhhhhchhhhhhhhccccchhHHHHHHHHHHHHHhhchHHHHHHHHhhhcc-cCCCCCCcchhHHHHHHHH
Q psy15227 223 EMNSIMDKTQEDLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPK-LDNAYFGPDQCILVFMIIM 301 (515)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~ 301 (515)
+.+.+..+++..++ ++.....+.. .+...........|.|.++++ .|++..+.+.......++.
T Consensus 223 -----------~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~ 287 (434)
T PRK15075 223 -----------RPSMREIFRSLAAN---WRIVLAGMLM-VAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSN 287 (434)
T ss_pred -----------ccccccHHHHHHHh---HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 00000111111221 1222222222 222233456677888988876 5888777777778888899
Q ss_pred HHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccch
Q psy15227 302 FLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPIN 381 (515)
Q Consensus 302 ~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~ 381 (515)
+++.++.|+++||+|||+.+..+..+..+.......... . ............+.+.+.+...+....+..|.+|++
T Consensus 288 ~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~ 363 (434)
T PRK15075 288 FIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLV-A---APSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAE 363 (434)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH-c---CCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCC
Confidence 999999999999999999877654443322211111111 0 112222222233334444445555567889999999
Q ss_pred hhhhhhhHHHHHHH-HHHHHHHHHHHHHHhhhchh
Q psy15227 382 VRCQASSCASVALA-FGSFITTKFHILITKSLGQH 415 (515)
Q Consensus 382 ~r~~~~g~~~~~~~-lg~~~~~~~~g~l~~~~g~~ 415 (515)
.|+++.++.+.... +++.++|.+.|.+.|+.|+.
T Consensus 364 ~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~ 398 (434)
T PRK15075 364 VRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK 398 (434)
T ss_pred ccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence 99999999765555 45888999999999998863
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-33 Score=277.78 Aligned_cols=403 Identities=13% Similarity=0.092 Sum_probs=263.6
Q ss_pred hHHHHHHHHHHHHHHhhhhhccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHH
Q psy15227 9 VYQIIATNTASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTT 88 (515)
Q Consensus 9 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~ 88 (515)
+++|.++..+.+.......+....+..+|.+.+ + + .+..+.+++.+.+.+++.++++++|+++||+|||++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~---~-g-----~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~ 95 (452)
T PRK11273 25 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVE---Q-G-----FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVF 95 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH---c-C-----CCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchh
Confidence 345665555555555556665556667787653 4 7 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhh-----hhhHHHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhhhHHHH-HHHH
Q psy15227 89 LLLNALLCLPTWFLVVSN-----KIECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTL-AILL 162 (515)
Q Consensus 89 l~~~~~l~~i~~~~~~~~-----~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~-~~~~ 162 (515)
++++.++.+++.+++++. +++.+++.|++.|++.+...+.....+.|++|+++|++++++++.+.++|.. .++.
T Consensus 96 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l 175 (452)
T PRK11273 96 LPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLL 175 (452)
T ss_pred HHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 999999999998888763 5778899999999999998888888999999999999999999999988864 4554
Q ss_pred Hhh----HHHhHHHHHhhhHHHHHHHHH-hhcccCcchhhhhcCChhHHHHHHHhhcCCCcChHHHHHHHHHHhhhhhhc
Q psy15227 163 IGN----HVSYNSLNIALSILPVIFFIL-FSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKS 237 (515)
Q Consensus 163 l~~----~l~wr~~f~i~~~~~~~~~~~-~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (515)
++. ..+||+.|++.+++.++..++ .+++||+|+....+++ ++.++ + ..++ ..++.+++.+.
T Consensus 176 ~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~---~-------~~~~---~~~~~~~~~~~ 241 (452)
T PRK11273 176 FLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDTPQSCGLPPI-EEYKN---D-------YPDD---YNEKHEQELTA 241 (452)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCCh-hhhhh---c-------cccc---cccccCCCccH
Confidence 332 128999999988877665444 4467888754211111 11000 0 0000 00000000000
Q ss_pred hhhh-hhhhccccchhHHHHHHHHHHHHHhhchHHHHHHHHhhhcc-cCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhh
Q psy15227 238 KTGY-LELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPK-LDNAYFGPDQCILVFMIIMFLSNFLQAPLMDIL 315 (515)
Q Consensus 238 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~ 315 (515)
+..+ ...++++..+. ..+..+......+....|.|.++++ .|++..+.+.......++.+++.++.|+++||+
T Consensus 242 ~~~~~~~~~~~~~~~~-----~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~ 316 (452)
T PRK11273 242 KQIFMQYVLPNKLLWY-----IAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV 316 (452)
T ss_pred HHHHHHHHHcChHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 12344433222 1111111112234566788988876 578777777788888889999999999999999
Q ss_pred --CCchhHH-HhhHHHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHH
Q psy15227 316 --GRKPLSC-FSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASV 392 (515)
Q Consensus 316 --grr~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~ 392 (515)
+||.... ....+..++...+.. . ...+.+...+.....+....+.......+..|.+|++.||++.|+.+.
T Consensus 317 ~~~r~~~~~~~~~~l~~~~~~~~~~--~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~ 390 (452)
T PRK11273 317 FRGNRGATGVFFMTLVTIATIVYWL--N----PAGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGL 390 (452)
T ss_pred ccCCcchHHHHHHHHHHHHHHHHHH--h----cccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHH
Confidence 4444322 222222222222211 1 012222223333333333222222333567799999999999999999
Q ss_pred HHHHHHHH-HHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHhhccccccHHH
Q psy15227 393 ALAFGSFI-TTKFHILITKSLGQHVIFFIYSSVHFCSVVFNYFYLMETKQKTLAE 446 (515)
Q Consensus 393 ~~~lg~~~-~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (515)
..++|+.+ +|.+.|.+.|+.|++..|.+.++.++++.+....+ .+.++|+.||
T Consensus 391 ~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 444 (452)
T PRK11273 391 FGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV-MIGEKRHHEE 444 (452)
T ss_pred HHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH-hccccchHHH
Confidence 99998765 79999999999999989988888877776665433 3333444443
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-32 Score=276.89 Aligned_cols=382 Identities=14% Similarity=0.075 Sum_probs=280.1
Q ss_pred HHHHHHHHHHHHHHhhhhhccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHH
Q psy15227 10 YQIIATNTASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTL 89 (515)
Q Consensus 10 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l 89 (515)
++|.++..++++.++...|.+..+..+|.+.+ ++| .+..+.+|+.+.|.++..++.+++|+++||+|||+++
T Consensus 3 ~~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~---~l~-----~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l 74 (495)
T PRK14995 3 RQWLTLVIIVLVYIPVAIDATVLHVAAPTLSM---TLG-----ASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLL 74 (495)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhC-----CCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 46778899999999999999999999999976 589 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhh-hhhHHHHHHHHhhhhhhhcccchhhhhhccc-ccccccccccccchhhhHHHHHHHHHhhHH
Q psy15227 90 LLNALLCLPTWFLVVSN-KIECLYIARLFIGISKGVAYTAMPIFIGEIS-EHNIRGALGSIPSGFQMVGTLAILLIGNHV 167 (515)
Q Consensus 90 ~~~~~l~~i~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~-~~~~r~~~~~~~~~~~~lG~~~~~~l~~~l 167 (515)
+.+.+++.+++++++++ |++.++++|+++|+|.+...+.....+.+++ |+++|++++++......+|..+||.+++.+
T Consensus 75 ~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l 154 (495)
T PRK14995 75 MLGGTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGIL 154 (495)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999 9999999999999999998888888887765 678999999999999999999999998776
Q ss_pred ----HhHHHHHhhhHHHHHHHHHhh-cccCcchhhhhcCChhHHHHH------------HHhhcCCCcChHHHHHH----
Q psy15227 168 ----SYNSLNIALSILPVIFFILFS-FVPETPHFHAAKNNLKKTEKS------------LKWYRGNKKDVMEEMNS---- 226 (515)
Q Consensus 168 ----~wr~~f~i~~~~~~~~~~~~~-~~pesp~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~---- 226 (515)
+||+.|++...++++.+++.. ++||.|+.. +++.+..... ++.......+.......
T Consensus 155 ~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~--~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 232 (495)
T PRK14995 155 LEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRR--DQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTG 232 (495)
T ss_pred hccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCC--CCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHH
Confidence 899999998887776655544 577765321 1111111110 00000000000000000
Q ss_pred -----HHHHhhhhhhchhhhhhhhccccchhHHHHHHHHHHHHHhhchHHHHHHHHhhhcc-cCCCCCCcchhHHHHHHH
Q psy15227 227 -----IMDKTQEDLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPK-LDNAYFGPDQCILVFMII 300 (515)
Q Consensus 227 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~ 300 (515)
.....+.+.+++.--.++++++......... +...........+.|.+++. .|+++.+++.......++
T Consensus 233 ~~~l~~f~~~e~~~~~p~~~~~lf~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~ 307 (495)
T PRK14995 233 ALLLGLFIRTQLAASRPMIDMRLFTHRIILSGVVMA-----MTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVA 307 (495)
T ss_pred HHHHHHHHHHHhcCCCCCcCHHHhCCcccHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 0000000111111113566655433222211 11122234555677777766 588988999999999999
Q ss_pred HHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccc
Q psy15227 301 MFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPI 380 (515)
Q Consensus 301 ~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~ 380 (515)
..++.++.|++.||+|+|+.+..+..+..++...+..... ..+.+......++.+++.+...+.......+..|+
T Consensus 308 ~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~ 382 (495)
T PRK14995 308 SGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDF-----STQQWQAWGLMALLGFSAASALLASTSAIMAAAPP 382 (495)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcC-----CCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCH
Confidence 9999999999999999999888777777666655443211 22334445566667777766566666777788899
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q psy15227 381 NVRCQASSCASVALAFGSFITTKFHILITKS 411 (515)
Q Consensus 381 ~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~ 411 (515)
++++.+.++.++..++|+.+|+.+.|.+.++
T Consensus 383 ~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~~ 413 (495)
T PRK14995 383 EKAAAAGAIETMAYELGAGLGIAIFGLLLSR 413 (495)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988753
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-33 Score=275.40 Aligned_cols=367 Identities=15% Similarity=0.072 Sum_probs=266.4
Q ss_pred HHHHHHHHHHHHhhhhhccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHHHH
Q psy15227 12 IIATNTASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLL 91 (515)
Q Consensus 12 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~~ 91 (515)
|..+....+..+..+... ..++..|.+.+ ++| +|+++.+++.+++.++..+++++.|+++||+|||+++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~-----~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~ 73 (377)
T TIGR00890 3 WYVLVGTVIMCFTSGYVY-TWTLLAPPLGR---YFG-----VGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAML 73 (377)
T ss_pred EEEeHHHHHHHHHhhHHh-hhhhHHHHHHH---HhC-----CCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHH
Confidence 344444444444444433 45677887765 588 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhh-hhhHHHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhhhHHHHHHHHHhhHH---
Q psy15227 92 NALLCLPTWFLVVSN-KIECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHV--- 167 (515)
Q Consensus 92 ~~~l~~i~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~l--- 167 (515)
+.++.+++.++++++ +++.+++.|++.|++.+...+.....+.|++| ++|+++.++...+.++|..+++.+...+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 152 (377)
T TIGR00890 74 GGILYGLGFTFYAIADSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINL 152 (377)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhc
Confidence 999999999999999 99999999999999999888888888999997 4699999999999999987765554433
Q ss_pred -HhHHHHHhhhHHHHHHHHHhh-cccCcchhhhhcCChhHHHHHHHhhcCCCcChHHHHHHHHHHhhhhhhchhhhhhhh
Q psy15227 168 -SYNSLNIALSILPVIFFILFS-FVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGYLELL 245 (515)
Q Consensus 168 -~wr~~f~i~~~~~~~~~~~~~-~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (515)
+||+.|++.++++++..+..+ +++|+|+... +++ + +.++++.+.++.+
T Consensus 153 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---------------~--------------~~~~~~~~~~~~~ 202 (377)
T TIGR00890 153 EGVPAAFIYMGIIFLLVIVLGAFLIGYPPGQLI-KTN---------------I--------------EVSVKDYTVWEML 202 (377)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHheecCchhcc-ccC---------------c--------------ccchhhhhHHHHH
Confidence 799999999988877765554 4555432100 000 0 0000011234455
Q ss_pred ccccchhHHHHHHHHHHHHHhhchHHHHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhh
Q psy15227 246 TNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSA 325 (515)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~ 325 (515)
+++..+.. ........ ........+.+.+.++.+.+..+.+.......+..++++++.+++.||++||+.+..+.
T Consensus 203 ~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~ 277 (377)
T TIGR00890 203 RTPQFWVL-YLSFFLNA----VSGLLLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVF 277 (377)
T ss_pred cCccHHHH-HHHHHHHh----HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 55433321 11111111 11223334445566667777666777888889999999999999999999999988887
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHH
Q psy15227 326 ALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFH 405 (515)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~ 405 (515)
....++.+.+.... ............+.+.+.+...+....+..|.+|+++|+++.|+.+....+|..++|.+.
T Consensus 278 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~ 351 (377)
T TIGR00890 278 GISAVGMAAMLFIP------MLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIA 351 (377)
T ss_pred HHHHHHHHHHHHcc------cchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHH
Confidence 77777766554410 111122223334444444555556667889999999999999999999999999999999
Q ss_pred HHHHhhhchhHHHHHHHHHHHHHH
Q psy15227 406 ILITKSLGQHVIFFIYSSVHFCSV 429 (515)
Q Consensus 406 g~l~~~~g~~~~~~~~~~~~~~~~ 429 (515)
|.+.++.|++..+.+.+++.+++.
T Consensus 352 g~l~~~~g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 352 SHALTEIGFEYTFIVTGAFALTSL 375 (377)
T ss_pred HHHHhhhchhhHHHHHHHHHHHhc
Confidence 999999999988888777666543
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-32 Score=269.87 Aligned_cols=359 Identities=16% Similarity=0.151 Sum_probs=261.9
Q ss_pred HHHHHHHHHHHhhhhhccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHHHHH
Q psy15227 13 IATNTASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLN 92 (515)
Q Consensus 13 ~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~~~ 92 (515)
..+....+..++..++.++..+.+|....+ ++| .|+.+.|++.+++.+++.+++++.|+++||+|||+++..+
T Consensus 15 ~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~--~~g-----~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~ 87 (399)
T PRK05122 15 LRIVSIVMFTFISYLTIGLPLAVLPGYVHD--QLG-----FSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFG 87 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcC-----ccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHH
Confidence 334556666677778888888888864321 578 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh---------hhhHHHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhhhHHHHHHHHH
Q psy15227 93 ALLCLPTWFLVVSN---------KIECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLI 163 (515)
Q Consensus 93 ~~l~~i~~~~~~~~---------~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l 163 (515)
.++.+++.+.+.++ +++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l 167 (399)
T PRK05122 88 LCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPL 167 (399)
T ss_pred HHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHH
Confidence 99888877665543 356789999999999999999999999999999999999999988888888888777
Q ss_pred hhHH----HhHHHHHhhhHHHHHHHHHhhcccCcchhhhhcCChhHHHHHHHhhcCCCcChHHHHHHHHHHhhhhhhchh
Q psy15227 164 GNHV----SYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKT 239 (515)
Q Consensus 164 ~~~l----~wr~~f~i~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (515)
+..+ +||+.+++.++..++..+.....|+++.. +++ +.
T Consensus 168 ~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-----------------------------------~~ 209 (399)
T PRK05122 168 GVLLYHWGGLAGLGLLIMLLALLGLLLARPRPAVPPV---KGE-----------------------------------RL 209 (399)
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCCCCC---Ccc-----------------------------------ch
Confidence 7654 89998887766655444333223332110 000 00
Q ss_pred hhhhhhccccchhHHHHHHHHHHHHHhhchHHHHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCch
Q psy15227 240 GYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKP 319 (515)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~ 319 (515)
++++.++ ..+.... ...+.. ........+.+.+..+.+.+ +.+.......++.+++.++.+++.||+++|+
T Consensus 210 ~~~~~~~--~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~ 280 (399)
T PRK05122 210 PFRRVLG--RVWPYGM-GLALAS----IGFGTIATFITLYYAARGWD--GAALALTLFGVAFVGARLLFGNLINRLGGLR 280 (399)
T ss_pred hHHHHHH--HHHHHHH-HHHHHH----HHHHHHHHHHHHHHHHcccc--cchHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 1111111 1111111 111111 11233445566666665553 4556667778888999999999999999999
Q ss_pred hHHHhhHHHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHH
Q psy15227 320 LSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSF 399 (515)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~ 399 (515)
.+..+..+.+++...+.. .++.+...+...+.+++.....+.......|.+|++.|+++.|+.+....+|..
T Consensus 281 ~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ 352 (399)
T PRK05122 281 VAIVSLLVEILGLLLLWL--------APSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLG 352 (399)
T ss_pred HHHHHHHHHHHHHHHHHH--------hccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 888777777766655544 233444555556666666555666666777888999999999999999999999
Q ss_pred HHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHH
Q psy15227 400 ITTKFHILITKSLGQHVIFFIYSSVHFCSVVFNY 433 (515)
Q Consensus 400 ~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 433 (515)
+++.+.|.+.+..|++..+.+.+++++++.++..
T Consensus 353 ~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 386 (399)
T PRK05122 353 ITGPLAGLVASWFGYPSIFLAAALAALLGLALTW 386 (399)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888888887777766553
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-32 Score=268.56 Aligned_cols=366 Identities=14% Similarity=0.144 Sum_probs=273.2
Q ss_pred HHHHHHHHHHHHHHhhhhhccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHH
Q psy15227 10 YQIIATNTASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTL 89 (515)
Q Consensus 10 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l 89 (515)
+++.....++++.+..+.+....++.+|.+.+ ++| +|.++.+++.+.+.+++.+++++.|++.||+|||+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~---~~~-----~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~ 75 (394)
T PRK03699 4 NRIKLTWISFLSYALTGALVIVTGMVMGPIAE---YFN-----LPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQL 75 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH---HhC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 34455566677788888888888888998866 588 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhh-hhhHHHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhhhHHHHHHHHHhhH--
Q psy15227 90 LLNALLCLPTWFLVVSN-KIECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNH-- 166 (515)
Q Consensus 90 ~~~~~l~~i~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~-- 166 (515)
..+.++..++.+++.++ +++.+++.|+++|++.+...+...+++.|++|+++|+++++..+...++|..++|.+...
T Consensus 76 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 155 (394)
T PRK03699 76 IFGFALMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLL 155 (394)
T ss_pred HHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 999999999999999999999999999999999999999998888888888888777644
Q ss_pred ---HHhHHHHHhhhHHHHHHHHHhhcccCcchhhhhcCChhHHHHHHHhhcCCCcChHHHHHHHHHHhhhhhhchhhhhh
Q psy15227 167 ---VSYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGYLE 243 (515)
Q Consensus 167 ---l~wr~~f~i~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (515)
.+||+.|.+.+++.++..++.++ .+.|+. ++++ + + ++++ ..++
T Consensus 156 ~~~~gw~~~f~~~~~~~~~~~~~~~~-~~~p~~--~~~~-~-------------~-------------~~~~----~~~~ 201 (394)
T PRK03699 156 ARSIEWYWVYACIGLVYVAIFILTLF-SEFPAL--GKHA-P-------------K-------------ADKP----VAKE 201 (394)
T ss_pred hccccHHHHHHHHHHHHHHHHHHHHh-cCCccc--cccC-c-------------c-------------ccCc----cccc
Confidence 38999999888877665554433 222210 0000 0 0 0000 0000
Q ss_pred hhccccchhHHHHHHHHHHHHHhhchHHHHHHHHhhhcc-cCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHH
Q psy15227 244 LLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPK-LDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSC 322 (515)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~ 322 (515)
. ..+.. ....+..+...........|.|.++++ .|++..+.+.......++..+++++.++++||++||+.+.
T Consensus 202 ~-----~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~ 275 (394)
T PRK03699 202 K-----WGIGV-LFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILT 275 (394)
T ss_pred c-----CChHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHH
Confidence 0 11111 122222222223345667888988854 6888888888888899999999999999999999999887
Q ss_pred HhhHHHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHH
Q psy15227 323 FSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITT 402 (515)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~ 402 (515)
....+..+...++.. .++.+...+..++.+++..+..+...++..|..|. .++...+....+.++|..++|
T Consensus 276 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~g~~i~p 346 (394)
T PRK03699 276 VLAGLALVLMYLFVN--------TDDPSHLLYAILGLGFFSSAIYTTIITLGSQQTKV-ASPKLVNFILTCGTIGTMLTF 346 (394)
T ss_pred HHHHHHHHHHHHHHH--------cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-CCHHHHHHHHHhhhHHHHHHH
Confidence 766555554444332 23333444445555555555666666677777664 467788888999999999999
Q ss_pred HHHHHHHhhhchhHHHHHHHHHHHHHHHHH
Q psy15227 403 KFHILITKSLGQHVIFFIYSSVHFCSVVFN 432 (515)
Q Consensus 403 ~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 432 (515)
.+.|.+.|..|++..++..+++.+++.+.+
T Consensus 347 ~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~ 376 (394)
T PRK03699 347 VVTSPIVAHFGLQAALLTANGLYAVVFVMC 376 (394)
T ss_pred HHHHHHHHHhCchhhhhhhHHHHHHHHHHH
Confidence 999999999999988888888877776554
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-32 Score=265.63 Aligned_cols=364 Identities=12% Similarity=0.097 Sum_probs=265.9
Q ss_pred chhHHHHHHHHHHHHHHhhhhhccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhh
Q psy15227 7 SYVYQIIATNTASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRK 86 (515)
Q Consensus 7 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr 86 (515)
.++..|..+..+.+..+..........+.+|.+.+ ++| .++++.++..+.+.++..+++++.|+++||+|||
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g-----~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr 85 (394)
T PRK10213 14 ITRPNWSAVFSVAFCVACLIIVEFLPVSLLTPMAQ---DLG-----ISEGVAGQSVTVTAFVAMFASLFITQTIQATDRR 85 (394)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH---HcC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcH
Confidence 44556766666666655555555455566777755 588 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhhhHHHHHHHHHhh
Q psy15227 87 TTLLLNALLCLPTWFLVVSN-KIECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGN 165 (515)
Q Consensus 87 ~~l~~~~~l~~i~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~ 165 (515)
+++..+.++.+++.+++.++ +++.+++.|+++|++.+...+...+++.|++|+++|+++.++...+.++|..++|.++.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~ 165 (394)
T PRK10213 86 YVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGS 165 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 99999999999999999999999999999999999999999999999999988888887
Q ss_pred HH----HhHHHHHhhhHHHHHHHHHhh-cccCcchhhhhcCChhHHHHHHHhhcCCCcChHHHHHHHHHHhhhhhhchhh
Q psy15227 166 HV----SYNSLNIALSILPVIFFILFS-FVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTG 240 (515)
Q Consensus 166 ~l----~wr~~f~i~~~~~~~~~~~~~-~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (515)
.+ +||+.|++.++++++..+... ..||+|+. + + +...+
T Consensus 166 ~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~~~-----~-~-------------------------------~~~~~ 208 (394)
T PRK10213 166 FLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLPGE-----P-S-------------------------------HQKQN 208 (394)
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCCCcc-----c-c-------------------------------cchhH
Confidence 65 899999998877766554443 36765421 0 0 00111
Q ss_pred hhhhhccccchhHHHHHHHHHHHHHhhchHHHHHH-HHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCch
Q psy15227 241 YLELLTNKSNRRAFTLVMAASLFQRLGGITSMITY-SSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKP 319 (515)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~ 319 (515)
.++.+++|..+..... ..... .+......+ .|.+.++.|++..+.+......+++.+++.++.+++.||.+ |+
T Consensus 209 ~~~~l~~~~~~~~~~~-~~~~~----~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~-~~ 282 (394)
T PRK10213 209 TFRLLQRPGVMAGMIA-IFMSF----AGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSV-KL 282 (394)
T ss_pred HHHHhcCHHHHHHHHH-HHHHH----HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccc-hh
Confidence 2345554433332211 11111 122233344 47777777888778888888889999999999999999954 44
Q ss_pred hHHHhhHHHHHH-HHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHH
Q psy15227 320 LSCFSAALGCLL-TFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGS 398 (515)
Q Consensus 320 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~ 398 (515)
.+..+..+.... ..+... .++.+.......+.++++....+...+++.+..|+ .++.+.+......++|.
T Consensus 283 ~l~~~~~~~~~~~~~l~~~--------~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~lg~ 353 (394)
T PRK10213 283 ALAGAPLVLAVSALVLTLW--------GSDKIVATGVAIIWGLTFALVPVGWSTWITRSLAD-QAEKAGSIQVAVIQLAN 353 (394)
T ss_pred HHHHHHHHHHHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHH
Confidence 433333333333 232222 23345555566677777666667666778887774 46677787888889999
Q ss_pred HHHHHHHHHHHhhhchhHHHHHHHHHHHHHHH
Q psy15227 399 FITTKFHILITKSLGQHVIFFIYSSVHFCSVV 430 (515)
Q Consensus 399 ~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 430 (515)
.+|+.+.|.+.|..|++..+...+.+.++..+
T Consensus 354 ~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~~~ 385 (394)
T PRK10213 354 TCGAAIGGYALDNIGLTSPLMLSGTLMLLTAL 385 (394)
T ss_pred HHHHHHHHHHHhccChhhHHHHHHHHHHHHHH
Confidence 99999999999999987666666655544443
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-32 Score=271.12 Aligned_cols=381 Identities=17% Similarity=0.202 Sum_probs=274.7
Q ss_pred chhHHHHHHHHHHHHHHhhhhhccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhh
Q psy15227 7 SYVYQIIATNTASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRK 86 (515)
Q Consensus 7 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr 86 (515)
.++++|.....+.+..+..+++.....+..|.+.+ ++| .+..+.+++.+.+.++..++.++.|+++||+|||
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-----~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~ 82 (398)
T TIGR00895 11 LSRYQWRAIILSFLIMLMDGYDLAAMGFAAPAISA---EWG-----LDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRK 82 (398)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhh---ccC-----CCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhH
Confidence 34456667777777788888888888888888765 478 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhhhHHHHHHHHHhh
Q psy15227 87 TTLLLNALLCLPTWFLVVSN-KIECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGN 165 (515)
Q Consensus 87 ~~l~~~~~l~~i~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~ 165 (515)
+.+..+.++..++.++..+. +++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..+++.+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 162 (398)
T TIGR00895 83 RVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAG 162 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHH
Confidence 99999999999999999989 99999999999999999999999999999999999999999999999999999988886
Q ss_pred HH----HhHHHHHhhhHHHHHHHHH-hhcccCcchhhhhcCChhHHHHHHHhhcCCCcChHHHHHHHHHHhhhhhhchhh
Q psy15227 166 HV----SYNSLNIALSILPVIFFIL-FSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTG 240 (515)
Q Consensus 166 ~l----~wr~~f~i~~~~~~~~~~~-~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (515)
.+ +||+.+++.++..++..+. ..++||++++..++ +.++..+..++......+..++ +..++.++++..+..
T Consensus 163 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 239 (398)
T TIGR00895 163 WLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSK-RPETVRRIVNAIAPQMQAEAQS--ALPEQKATQGTKRSV 239 (398)
T ss_pred HHhhcccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhc-CHHHHHHHHHHHHHhccccccc--cccccccccchhhHH
Confidence 65 8999999887665554444 44689988765544 3333333222221111000000 000000000011111
Q ss_pred hhhhhccccchhHHHHHHHHHHHHHhhchHHHHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchh
Q psy15227 241 YLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPL 320 (515)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~ 320 (515)
.+..+++ ...+..... ................+.|.+.++.|.+..+.+.......++.+++.++.++++||++||+.
T Consensus 240 ~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 317 (398)
T TIGR00895 240 FKALFQG-KTARITVLL-WLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVT 317 (398)
T ss_pred HHHHhcc-hhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHH
Confidence 2223332 222222222 22222233344556677787777888887888888899999999999999999999999854
Q ss_pred HHHhhHHHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHH
Q psy15227 321 SCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFI 400 (515)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~ 400 (515)
... ..+..+...++.. . ..+.+......++.+++.+...+...++..|.+|++.|+++.|+.+....+|..+
T Consensus 318 ~~~-~~~~~~~~~~~~~--~-----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~ 389 (398)
T TIGR00895 318 ALL-LLLGAVFAVLVGS--T-----LFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAII 389 (398)
T ss_pred HHH-HHHHHHHHHHHHH--H-----hhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 433 3333333222222 1 2233445556666777666667778899999999999999999999999999999
Q ss_pred HHHHHHHH
Q psy15227 401 TTKFHILI 408 (515)
Q Consensus 401 ~~~~~g~l 408 (515)
+|.+.|.+
T Consensus 390 g~~~~G~l 397 (398)
T TIGR00895 390 GPILAGYL 397 (398)
T ss_pred HHHhHHhc
Confidence 99998875
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=265.55 Aligned_cols=358 Identities=14% Similarity=0.117 Sum_probs=256.4
Q ss_pred HHHHHHHHHhhhhhccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHHHHHHH
Q psy15227 15 TNTASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNAL 94 (515)
Q Consensus 15 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~~~~~ 94 (515)
+..+.++.++.....++..|.+|.... +++| .|..+.|++.+++.+++.++++++|+++||+|||++++.+.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~p~l~~~l~--~~lg-----~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~ 89 (392)
T PRK12382 17 LFRIAFAVFLTYMTVGLPLPVIPLFVH--HDLG-----FGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGML 89 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHH--HhcC-----CcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHH
Confidence 333444555556667777777775322 1588 999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHH--------hh-hhhHHHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhhhHHHHHHHHHhh
Q psy15227 95 LCLPTWFLVV--------SN-KIECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGN 165 (515)
Q Consensus 95 l~~i~~~~~~--------~~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~ 165 (515)
+..++.+... .. +++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+...|..+++.++.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~ 169 (392)
T PRK12382 90 ACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGL 169 (392)
T ss_pred HHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHH
Confidence 7776654321 23 78899999999999999988989999999999999999999999998888888888876
Q ss_pred HH----HhHHHHHhhhHHHHHHHHHhhcccCcchhhhhcCChhHHHHHHHhhcCCCcChHHHHHHHHHHhhhhhhchhhh
Q psy15227 166 HV----SYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGY 241 (515)
Q Consensus 166 ~l----~wr~~f~i~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (515)
.+ +||+.+.+..+..++........||.+.. ++ ++.+.
T Consensus 170 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-----------------------------------~~~~~ 211 (392)
T PRK12382 170 LLHSHFGFAALALTTMVLPLLAWAFNGTVRKVPAH---AG-----------------------------------ERPSL 211 (392)
T ss_pred HHHhccChHHHHHHHHHHHHHHHHHHHhccCCCCC---cc-----------------------------------cCchH
Confidence 54 89987766555444333322223332110 00 00001
Q ss_pred hhhhccccchhHHHHHHHHHHHHHhhchHHHHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhH
Q psy15227 242 LELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLS 321 (515)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~ 321 (515)
++..+ ..+....... +. .........+.+.++++.+.+ ..+.......++.++++++.+++.||+++|+.+
T Consensus 212 ~~~~~--~~~~~~~~~~-l~----~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~ 282 (392)
T PRK12382 212 WSVVG--LIWKPGLGLA-LQ----GVGFAVIGTFVSLYFASKGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVA 282 (392)
T ss_pred HHHHH--HHHHhHHHHH-HH----HHHHhHHHHHHHHHHHhcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeh
Confidence 11111 1111111111 11 112234455666666666654 345556667777889999999999999999998
Q ss_pred HHhhHHHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHH
Q psy15227 322 CFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFIT 401 (515)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~ 401 (515)
..+..+.+++..++.. .++.+...+...+.+.+.....+...+...|.+|+++|+++.|+.+....+|..++
T Consensus 283 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig 354 (392)
T PRK12382 283 IVSLLVETVGLLLLWL--------APTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVS 354 (392)
T ss_pred HHHHHHHHHHHHHHHH--------cccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887777777665544 23344445555666666655556666777888999999999999999999999999
Q ss_pred HHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHH
Q psy15227 402 TKFHILITKSLGQHVIFFIYSSVHFCSVVFNYF 434 (515)
Q Consensus 402 ~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 434 (515)
|.+.|.+.|+.|++..+.+.+++.+++.+....
T Consensus 355 ~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 387 (392)
T PRK12382 355 GPLAGMLATSFGYPSVFLAGAISAVLGIIVTIL 387 (392)
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999888888777666543
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=272.00 Aligned_cols=382 Identities=16% Similarity=0.136 Sum_probs=268.6
Q ss_pred hhhhhccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q psy15227 24 IAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALLCLPTWFLV 103 (515)
Q Consensus 24 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~ 103 (515)
...++....+...|.+.+ +++ .++.+.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~---~~g-----~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~ 76 (399)
T TIGR00893 5 INYLDRANLSFAAPMLQE---DLG-----LSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQ 76 (399)
T ss_pred HHHHHHHhhhHhHHHHHH---hhC-----CChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHH
Confidence 445566667777777655 588 999999999999999999999999999999999999999999999999999
Q ss_pred Hhh-hhhHHHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhhhHHHHHHHHHhhHH----HhHHHHHhhhH
Q psy15227 104 VSN-KIECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHV----SYNSLNIALSI 178 (515)
Q Consensus 104 ~~~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~l----~wr~~f~i~~~ 178 (515)
+++ +++.++++|++.|++.+...+....++.|++|+++|++++++.+....+|..+++.++..+ +||+.|++.++
T Consensus 77 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~ 156 (399)
T TIGR00893 77 AFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGV 156 (399)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 999 9999999999999999999999999999999999999999999999999999999888764 89999999888
Q ss_pred HHHHHHHHhh-cccCcchhhhhcCChhHHHHHHHhhcCCCcChHHHHHHHHHHhhhhhhchhhhhhhhccccchhHHHHH
Q psy15227 179 LPVIFFILFS-FVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGYLELLTNKSNRRAFTLV 257 (515)
Q Consensus 179 ~~~~~~~~~~-~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (515)
+.++..+..+ +.||+|+.... .++++.....++.. +..+..++++.++.+.++.++++..+.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 219 (399)
T TIGR00893 157 LGIIWGVLWLKFIPDPPQKAKW-LTEEEKYIVVGGLL-----------AEQQGKGPSTPKKYQIKELLKDRRVWG----- 219 (399)
T ss_pred HHHHHHHHhhheecCCCCcccc-CCHHHHhhcchhhc-----------cccccccccCCCccchHHHhcCHHHHH-----
Confidence 8776665554 46666532110 01110000000000 000001111122334556666543222
Q ss_pred HHHHHHHHhhchHHHHHHHHhhhcc-cCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHH-HhhHHHHHHHHHH
Q psy15227 258 MAASLFQRLGGITSMITYSSTLLPK-LDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSC-FSAALGCLLTFST 335 (515)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~-~~~~~~~~~~~~~ 335 (515)
.....+...........+.|.++++ .+.+..+.+.......+..+++.++.++++||++||+... .......++.+..
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (399)
T TIGR00893 220 LALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVL 299 (399)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHH
Confidence 2222222223345566677777654 5877778888888999999999999999999999886211 1111111111111
Q ss_pred HHHHHhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc-h
Q psy15227 336 GLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLG-Q 414 (515)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~g-~ 414 (515)
........ ..............+.+..+..+...++..|.+|++.|+++.|+.+.+.++|..++|.+.|.+.|..| +
T Consensus 300 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~ 377 (399)
T TIGR00893 300 SLLMFATN--YVNIPYAALALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSF 377 (399)
T ss_pred HHHHHHhc--cchhHHHHHHHHHHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCch
Confidence 11111000 11112222222333333344678888999999999999999999999999999999999999999988 8
Q ss_pred hHHHHHHHHHHHHHHHHH
Q psy15227 415 HVIFFIYSSVHFCSVVFN 432 (515)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~ 432 (515)
...+.+.+++.+++.+..
T Consensus 378 ~~~~~~~~~~~~~~~~~~ 395 (399)
T TIGR00893 378 AGALMVVAALALIGALSY 395 (399)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 888888777777766554
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-32 Score=272.76 Aligned_cols=374 Identities=12% Similarity=0.004 Sum_probs=276.5
Q ss_pred HHhhhhhccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHHHHHHHHHHHHHH
Q psy15227 22 LLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALLCLPTWF 101 (515)
Q Consensus 22 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~ 101 (515)
.++..+..+...+.+|.+.+ +++ .++.+.|++.+.+.++..+++++.|+++||+|||+++..+.++.+++.+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~---~~~-----~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~ 97 (417)
T PRK10489 26 RFISIFGLGLLGVAVPVQIQ---MMT-----GSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFI 97 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHH-----CCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHH
Confidence 34445555666777777654 467 7899999999999999999999999999999999999998888777766
Q ss_pred HHHh-----h-hhhHHHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhhhHHHHHHHHHhhHH----HhHH
Q psy15227 102 LVVS-----N-KIECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHV----SYNS 171 (515)
Q Consensus 102 ~~~~-----~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~l----~wr~ 171 (515)
.... . +++.+++.|++.|++.+...++..+++.|++|+++|+++.++...+.++|..+++.+++.+ +|++
T Consensus 98 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~ 177 (417)
T PRK10489 98 GLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAW 177 (417)
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHH
Confidence 5442 4 7889999999999999988888899999999999999999999999999999888887664 8999
Q ss_pred HHHhhhHHHHHHHHHhhcccCcchhhhhcCChhHHHHHHHhhcCCCcChHHHHHHHHHHhhhhhhchhhhhhhhccccch
Q psy15227 172 LNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGYLELLTNKSNR 251 (515)
Q Consensus 172 ~f~i~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (515)
.|++.++..++..+..+.+||+++.. ++.++ .. ++....++..++++..+
T Consensus 178 ~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~--------------~~-------------~~~~~~~~~~~~~~~~~ 227 (417)
T PRK10489 178 NYGLAAAGTFITLLPLLRLPALPPPP---QPREH--------------PL-------------RSLLAGFRFLLASPVVG 227 (417)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCC---ccccc--------------ch-------------HHHHHHHHHHHcChHHH
Confidence 99988877776666666677754311 00000 00 00011233444544322
Q ss_pred hHHHHHHHHHHHHHhhchHHHHHHHHhhhcc-cCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHH
Q psy15227 252 RAFTLVMAASLFQRLGGITSMITYSSTLLPK-LDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCL 330 (515)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~ 330 (515)
...+..+. ... ......+.|.+.++ .|.++...+.......++.+++.++.+++.||.++++.+..+..+.++
T Consensus 228 ~~~~~~~~-~~~-----~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~ 301 (417)
T PRK10489 228 GIALLGGL-LTM-----ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFL 301 (417)
T ss_pred HHHHHHHH-HHH-----HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHH
Confidence 22211111 111 23445567777777 688877888888889999999999999999997777777777766666
Q ss_pred HHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q psy15227 331 LTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITK 410 (515)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~ 410 (515)
+.+++.. .++.+...+..++++.+.....+...+++.|..|++.||++.|+.+...++|..++|.+.|.+.+
T Consensus 302 ~~~~~~~--------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~ 373 (417)
T PRK10489 302 AVGLFGL--------MPMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGA 373 (417)
T ss_pred HHHHHHc--------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHH
Confidence 6555443 33334444555555555554556666788999999999999999999999999999999999999
Q ss_pred hhchhHHHHHHHHHHHHHHHHHHHHhhccccccHHHH
Q psy15227 411 SLGQHVIFFIYSSVHFCSVVFNYFYLMETKQKTLAEI 447 (515)
Q Consensus 411 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (515)
..|....+...+++.++..++.....++.++++++|.
T Consensus 374 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (417)
T PRK10489 374 MMTPVASASASGFGLLIIGVLLLLVLGELRRFRQTPP 410 (417)
T ss_pred HhchhhHHHHHHHHHHHHHHHHHHhcccccccccccc
Confidence 9998888888888777776666666677666554443
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-32 Score=270.78 Aligned_cols=399 Identities=13% Similarity=0.086 Sum_probs=265.9
Q ss_pred HHHHHHHHHHHHHhhhhhccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHHH
Q psy15227 11 QIIATNTASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLL 90 (515)
Q Consensus 11 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~ 90 (515)
+|.......+.......+........|.+.+ .| .++++.+++.+.+.++..+++++.|+++||+|||+.+.
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~----~g-----~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~ 95 (438)
T TIGR00712 25 RWQVFLGIFFGYAAYYLVRKNFALAMPYLVE----QG-----FSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLP 95 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHhhhHHHHH----cC-----CCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehH
Confidence 4555556666666666666666667776643 47 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhh-----hhhHHHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhhhHHHHHHHHHhh
Q psy15227 91 LNALLCLPTWFLVVSN-----KIECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGN 165 (515)
Q Consensus 91 ~~~~l~~i~~~~~~~~-----~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~ 165 (515)
.+.++.+++.++.++. +++.+.+.|++.|++.|...+.....+.|++|+++|++++++.+.+.++|..+++.+..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~ 175 (438)
T TIGR00712 96 AGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVL 175 (438)
T ss_pred HHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHH
Confidence 9999999998887653 57788899999999999998989999999999999999999999999998888776543
Q ss_pred H-----HHhHHHHHhhhHHHHHHHHH-hhcccCcchhhhhcCChhHHHHHHHhhcCCCcChHHHHHHHHHHhhhhhhchh
Q psy15227 166 H-----VSYNSLNIALSILPVIFFIL-FSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKT 239 (515)
Q Consensus 166 ~-----l~wr~~f~i~~~~~~~~~~~-~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (515)
. .+||+.|++.++++++..+. .+++||+|+....++..++ +.+.. + +. .++.+.+.+.+.
T Consensus 176 ~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~--~-~~---~~~~~~~~~~~~ 241 (438)
T TIGR00712 176 LGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTPQSCGLPPIEEY--------RNDYP--D-DY---NEKAEQELTAKE 241 (438)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCCchhc--------ccccc--c-cc---ccccccccchHH
Confidence 2 38999999988888775544 4457887754211110000 00000 0 00 000000000011
Q ss_pred h-hhhhhccccchhHHHHHHHHHHHHHhhchHHHHHHHHhhhcc-cCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCC
Q psy15227 240 G-YLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPK-LDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGR 317 (515)
Q Consensus 240 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr 317 (515)
. .+..++++..+..... .+......+....|.|.++++ .|.++.+++.......+.+++++++.|+++||+++
T Consensus 242 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~ 316 (438)
T TIGR00712 242 IFMQYVLPNKLLWYIAIA-----NVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFK 316 (438)
T ss_pred HHHHHHccCchHHHHHHH-----HHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1 1234555433322111 111122234566788888876 58887788888888999999999999999999964
Q ss_pred chhHHHhhHHHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHH
Q psy15227 318 KPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFG 397 (515)
Q Consensus 318 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg 397 (515)
++....+.............+.. . ...+.+......+..+.+..+..........|.+|++.|+++.|+.+...+++
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g 393 (438)
T TIGR00712 317 GNRGATGVFFMTLVTIAVIVYWM-N--PAGNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLG 393 (438)
T ss_pred CcccHHHHHHHHHHHHHHHHHHh-c--CCCchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhh
Confidence 43222222222211111111111 0 01122222222233332222211222245679999999999999999988887
Q ss_pred H-HHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHhhccc
Q psy15227 398 S-FITTKFHILITKSLGQHVIFFIYSSVHFCSVVFNYFYLMETK 440 (515)
Q Consensus 398 ~-~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (515)
+ .++|.+.|.+.|+.|+...+.+.++..+++.+..+...+|.|
T Consensus 394 g~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (438)
T TIGR00712 394 GSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK 437 (438)
T ss_pred hhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 5 689999999999999988888888887777777666666543
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-32 Score=273.83 Aligned_cols=367 Identities=14% Similarity=0.082 Sum_probs=242.1
Q ss_pred HHHHHHhhhhhccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHHHHHHHHHH
Q psy15227 18 ASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALLCL 97 (515)
Q Consensus 18 ~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~~~~~l~~ 97 (515)
..+..+...++.....+.+|.+.+ ++| ++..+.+++.+.+.+++.+++++.|+++||+|||+++..+.++++
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~l~~---~~g-----ls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~ 112 (476)
T PLN00028 41 SWISFFTCFVSTFAAAPLLPIIRD---NLN-----LTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTA 112 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HcC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 333444444555556677787765 588 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhh-hhhHHHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhhhHHHHHH----HHHhh-------
Q psy15227 98 PTWFLVVSN-KIECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAI----LLIGN------- 165 (515)
Q Consensus 98 i~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~----~~l~~------- 165 (515)
++.++++++ +++.+++.|++.|++.+... ....+++|++|+++|++++++.....++|..++ +.+..
T Consensus 113 ~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~ 191 (476)
T PLN00028 113 PAVFCMSLVSSATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGA 191 (476)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999 99999999999999988654 456688999999999999999876655555554 33322
Q ss_pred --HHHhHHHHHhhhHHHHHHHHHhhccc-CcchhhhhcCChhHHHHHHHhhcCCCcChHHHHHHHHHHhhhhhhchhhhh
Q psy15227 166 --HVSYNSLNIALSILPVIFFILFSFVP-ETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGYL 242 (515)
Q Consensus 166 --~l~wr~~f~i~~~~~~~~~~~~~~~p-esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (515)
..+||+.|++.++++++..+..++++ +.|+. +.++..+ +...++.+....++
T Consensus 192 ~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~~-----~~~~~~~--------------------~~~~~~~~~~~~~~ 246 (476)
T PLN00028 192 PSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPDG-----NYRELKK--------------------SGTMPKDSFSKVLR 246 (476)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCCC-----chhhHHh--------------------cCccccccHHHHHH
Confidence 13799999999988877666655544 33320 0000000 00000000112234
Q ss_pred hhhccccchhHHHHHHHHHHHHHhhchHHHHHHHHhhhcc-cCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCch--
Q psy15227 243 ELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPK-LDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKP-- 319 (515)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~-- 319 (515)
+.+++++.+... . ..+...........+.|.++.+ .|++..+++.......++.++++++.|+++||++||+
T Consensus 247 ~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~ 321 (476)
T PLN00028 247 YGVTNYRTWILA-L----TYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGM 321 (476)
T ss_pred HHHcCchhHHHH-H----HHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCc
Confidence 455544433211 1 1111111223445566766644 5888788888889999999999999999999998652
Q ss_pred -----hHHHhhHHHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHH
Q psy15227 320 -----LSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVAL 394 (515)
Q Consensus 320 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~ 394 (515)
.......+.++..+.+.. .++.+...+.+.+++++.....+..+.+..+.. ++.+|++.|+.+..+
T Consensus 322 ~~r~~~~~~~~~l~~i~~~~~~~--------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~g 392 (476)
T PLN00028 322 RGRLWALWIVQTLGGVFCIWLGR--------ANSLGAAIVVMILFSIFVQAACGATFGIVPFVS-RRSLGVISGLTGAGG 392 (476)
T ss_pred chhHHHHHHHHHHHHHHHHHhcc--------cchHHHHHHHHHHHHHHHHHhhhhhcccCcccC-hhhchhhhhhhhccc
Confidence 111222222222222111 222333344444555544334444556667764 578999999998888
Q ss_pred HHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHH
Q psy15227 395 AFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFNY 433 (515)
Q Consensus 395 ~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 433 (515)
++|+.++|.+.+ ..+..+|...|.+.+++.+++.++.+
T Consensus 393 ~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~ 430 (476)
T PLN00028 393 NVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVA 430 (476)
T ss_pred cHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHH
Confidence 888888887654 22234577888888888777766653
|
|
| >KOG0255|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-31 Score=269.08 Aligned_cols=384 Identities=20% Similarity=0.193 Sum_probs=285.9
Q ss_pred cchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHhhhhhhhcccchhh
Q psy15227 53 LNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALLCLPTWFLVVSN-KIECLYIARLFIGISKGVAYTAMPI 131 (515)
Q Consensus 53 ~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~ 131 (515)
.+.....+..+++++|..+|++++|+++||+|||++++.++++..++.++.+++ |++.+++.|+++|++.++.......
T Consensus 115 ~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~ 194 (521)
T KOG0255|consen 115 DSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFG 194 (521)
T ss_pred CcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHh
Confidence 677888999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred hhhcccccccccccccccchhhhHHHHHHHHHhhHH--HhHHHHHhhhHHHHHHHHHhhcccCcchhhhhcCChhHHHHH
Q psy15227 132 FIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHV--SYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKS 209 (515)
Q Consensus 132 ~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~l--~wr~~f~i~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~ 209 (515)
++.|++++++|+.+..+ ......|..+++..+.++ +||+.+++..+++++.++..++.||||||+..+++.+++.+.
T Consensus 195 ~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g~~~~a~~~ 273 (521)
T KOG0255|consen 195 LVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITRDWRWLFWIISIPSGLFLLLWFLPPESPRWLLSKGRIDEAIKI 273 (521)
T ss_pred hheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccCcChHHHHHcCchHHHHHH
Confidence 99999999999999999 666666666666666555 899999999999988877766678999999999999999999
Q ss_pred HHhhcCCC---cChHHHHHHH---HHHhhhhhhchhhhhhhhccccchhHHHHHHHHHHHHHhhchHHHHHHH-Hhhhcc
Q psy15227 210 LKWYRGNK---KDVMEEMNSI---MDKTQEDLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYS-STLLPK 282 (515)
Q Consensus 210 ~~~~~~~~---~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 282 (515)
+++..+.+ .+..+..... +.......+++..+.++++.+..++..+.....++... ..++. +.....
T Consensus 274 l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~------~~y~gl~~~~~~ 347 (521)
T KOG0255|consen 274 LKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFS------LVYYGLSLNVSG 347 (521)
T ss_pred HHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHh------HHHHhhhhhhhh
Confidence 88875432 2122222211 11111112233557788887655665555555543221 12221 122222
Q ss_pred cCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHH
Q psy15227 283 LDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAAS 362 (515)
Q Consensus 283 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 362 (515)
.| ..........+.....+....+...|+.|||.....+..+..++.+..++... ....+...+...+..++
T Consensus 348 lg---~~~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 419 (521)
T KOG0255|consen 348 LG---GNIYLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPD-----DLGGWLHWILPLLGKFF 419 (521)
T ss_pred cC---chHHHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhc-----cchhHHHHHHHHHHHHH
Confidence 33 45555566666688888888899999999999999999999988888877433 11112333333334444
Q ss_pred HhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHhhccccc
Q psy15227 363 YYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFNYFYLMETKQK 442 (515)
Q Consensus 363 ~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (515)
........+.+.+|++|+..|+.+.+.......++++++|.+...... ......+.+++....+...++..++||++++
T Consensus 420 ~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~lpet~~~ 498 (521)
T KOG0255|consen 420 IGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQ-MFPLLGLILFGWLALLLGLLSLLLLPETKGK 498 (521)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcccchHHHHHHHHHHHHHHHHhcCcccCCC
Confidence 444444447899999999999999999999999999999988755544 3333333445667777777776889999999
Q ss_pred cHHHHHHHHh
Q psy15227 443 TLAEIQESIM 452 (515)
Q Consensus 443 ~~~~~~~~~~ 452 (515)
.+.+..++.+
T Consensus 499 ~l~~t~~~~~ 508 (521)
T KOG0255|consen 499 PLPGTLLDAE 508 (521)
T ss_pred CCchhHHHHH
Confidence 8876655544
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-32 Score=273.95 Aligned_cols=392 Identities=12% Similarity=0.096 Sum_probs=266.3
Q ss_pred chhHHHHHHHHHHHHHHhhhhhccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhh
Q psy15227 7 SYVYQIIATNTASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRK 86 (515)
Q Consensus 7 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr 86 (515)
...++|.++..+.+.......+....+..+|.+.+ ++| .+.++.+++.+.+.++..++.++.|+++||+|||
T Consensus 13 ~~~~~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~g-----~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r 84 (455)
T TIGR00892 13 DGGWGWVVLGATFVSIGFSYAFPKAVTVFFKELQQ---IFQ-----ATYSETAWISSIMLAVLYAGGPISSILVNRFGCR 84 (455)
T ss_pred CCCcchHHHHHHHHHHHHHHhhhcchhhhHHHHHH---HhC-----cchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCch
Confidence 34456877777666655433343445666777755 588 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhh-hhhHHHH-HHHHhhhhhhhcccchhhhhhcccccccccccccccchhhhHHHHHHHHHh
Q psy15227 87 TTLLLNALLCLPTWFLVVSN-KIECLYI-ARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIG 164 (515)
Q Consensus 87 ~~l~~~~~l~~i~~~~~~~~-~~~~l~~-~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~ 164 (515)
++++.+.++.++++++++++ +++.+++ .|+++|++.+...+...+++.++++ ++|+++.++.+.+..+|..+++.++
T Consensus 85 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~ 163 (455)
T TIGR00892 85 PVVIAGGLLASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLN 163 (455)
T ss_pred HHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHH
Confidence 99999999999999999999 9888865 5799999999877777888899996 6799999999999999988887776
Q ss_pred hHH----HhHHHHHhhhHHHHHHHHHhhcc-cCcchhhhhcCChhHHHHHHHhhcCCCcChHHHHHHHHHHhhhhhhchh
Q psy15227 165 NHV----SYNSLNIALSILPVIFFILFSFV-PETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKT 239 (515)
Q Consensus 165 ~~l----~wr~~f~i~~~~~~~~~~~~~~~-pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (515)
+.+ |||+.|++.+++.++..+..+++ ++.+... +.+.++ . +......+ .++. + ..... ++..+.
T Consensus 164 ~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~~-~---~~~~~~~~-~~~~--~-~~~~~-~~~~~~ 232 (455)
T TIGR00892 164 QYLFESFGWRGSFLILGGLLLHCCVCGALMRPVGPSQR--VSKSKS-K---EGLPPDGS-TKKL--S-KKSTA-EKINRF 232 (455)
T ss_pred HHHHHHhChHHHHHHHHHHHHHHHHHHHHhCCCCcccc--cccccc-c---ccCCCCCc-cccc--c-ccchh-hhhhhh
Confidence 654 89999999998877665544433 3322110 000000 0 00000000 0000 0 00000 000011
Q ss_pred hhhhhhccccchhHHHHHHHHHHHHHhhchHHHHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhh--CC
Q psy15227 240 GYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDIL--GR 317 (515)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--gr 317 (515)
...++++++.++.... ..+...........+.+.+.++.|++..+.+......+++.++++++.+++.||. ++
T Consensus 233 ~~~~~~~~~~~~~~~~-----~~~l~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~ 307 (455)
T TIGR00892 233 LDFSLFTHRGFLVYLS-----GNVIMFLGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRP 307 (455)
T ss_pred cchHHhcCchHHHHHH-----HHHHHHHHccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCH
Confidence 0123555543332111 1111112234445677777777888888888999999999999999999999973 33
Q ss_pred chhHHHhh--HHHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHH
Q psy15227 318 KPLSCFSA--ALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALA 395 (515)
Q Consensus 318 r~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~ 395 (515)
|+...... .+.+++.+++.. .++.+..++..++.+++.+...+...+++.|.+|+++++++.|+.+...+
T Consensus 308 ~~~~~~~~~~~~~~l~~ll~~~--------~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ 379 (455)
T TIGR00892 308 HVQYLFSFALLFNGLTHLLCAL--------AGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVEC 379 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------hchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHH
Confidence 33333222 222222222222 23344555566667776666667777888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhc-hhHHHHHHHHHHHHHHHH
Q psy15227 396 FGSFITTKFHILITKSLG-QHVIFFIYSSVHFCSVVF 431 (515)
Q Consensus 396 lg~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~ 431 (515)
+|++++|.+.|.+.|..| ++..|++.+++.+++.+.
T Consensus 380 lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~ 416 (455)
T TIGR00892 380 CAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLF 416 (455)
T ss_pred HHHHccccceeeeehhcCCcchHHHHhhHHHHHHHHH
Confidence 999999999999999875 777888777776665553
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-32 Score=273.76 Aligned_cols=399 Identities=16% Similarity=0.115 Sum_probs=273.5
Q ss_pred chhHHHHHHHHHHHHHHhhhhhccchhhhhhcccCCCCc--------------ccccccccchhhHHHHHHHHHHHhhhh
Q psy15227 7 SYVYQIIATNTASISLLIAGCWIAWPSVMIKRLTDENPD--------------LENIGIRLNKYQLSWMVSLLDLGNAIS 72 (515)
Q Consensus 7 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~--------------~~~~~~~~s~~~~~~~~s~~~lg~~i~ 72 (515)
..+.+|.+..+++++......|....+...+.+.++.++ ..+.+++++..+.|++.+.+.+++.++
T Consensus 13 ~~~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~ 92 (465)
T TIGR00894 13 FCSFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQIII 92 (465)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHHH
Confidence 455677788888887777777877777777766541110 001123399999999999999999999
Q ss_pred hhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHhhhhhhhcccchhhhhhccccccccccccccc
Q psy15227 73 PIFAGILVEKIGRKTTLLLNALLCLPTWFLVVSN---KIECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIP 149 (515)
Q Consensus 73 ~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~---~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~ 149 (515)
+++.|+++||+|||+++..+.++++++.+++.++ +++.+++.|+++|++.+...+....++.|++|+++|++++++.
T Consensus 93 ~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 172 (465)
T TIGR00894 93 QIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMS 172 (465)
T ss_pred HcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHH
Confidence 9999999999999999999999999999887654 5888999999999999999999999999999999999999999
Q ss_pred chhhhHHHHHHHHHhhHH-----HhHHHHHhhhHHHHHHHHHhhc-ccCcchhhhhcCChhHHHHHHHhhcCCCcChHHH
Q psy15227 150 SGFQMVGTLAILLIGNHV-----SYNSLNIALSILPVIFFILFSF-VPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEE 223 (515)
Q Consensus 150 ~~~~~lG~~~~~~l~~~l-----~wr~~f~i~~~~~~~~~~~~~~-~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (515)
..+..+|..+++.+++.+ +||+.|++.++++++..+.++. .+|+|+.....+ +++. +..
T Consensus 173 ~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~-~~i------------- 237 (465)
T TIGR00894 173 TSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCIS-KFEK-KYI------------- 237 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCCCCC-HHHH-HHH-------------
Confidence 999999999988887654 8999999999988777666554 567764311111 1110 000
Q ss_pred HHHHHHHhhhhhhchhhhhhhhccccchhHHHHHHHHHHHHHhhchHHHHHHHHhhhcc-cCCCCCCcchhHHHHHHHHH
Q psy15227 224 MNSIMDKTQEDLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPK-LDNAYFGPDQCILVFMIIMF 302 (515)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~ 302 (515)
++..++.+++.+.+.+++++++++..+ ......+......+.+..|.|.++++ .|.+..+.+.......++..
T Consensus 238 -~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~ 311 (465)
T TIGR00894 238 -NSSLQGQKGSTRQSLPIKAIPKSLPVW-----AIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAW 311 (465)
T ss_pred -HhhcccccCCCCCCCCHHHHhcCHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHH
Confidence 000000000111233466777654332 22333333334456777888988765 58887888888889999999
Q ss_pred HHHHHHHHHHhhhCCchhH--------HHhhHHHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhh
Q psy15227 303 LSNFLQAPLMDILGRKPLS--------CFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILV 374 (515)
Q Consensus 303 ~~~~~~g~l~d~~grr~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 374 (515)
++.++.|+++||.++|+.. ..+......+...+..... ....+..++...+.+.+.....+......
T Consensus 312 i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 386 (465)
T TIGR00894 312 LCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYL-----SAAFYLTIIILTLANAVSSGPLAGVLINS 386 (465)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCchHHHHHHHHHHHHHhhhhhhhhhhch
Confidence 9999999999997644321 1111111111111111100 12223333333333333333344444455
Q ss_pred cccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhh---chhHHHHHHHHHHHHHHHHH
Q psy15227 375 SELFPINVRCQASSCASVALAFGSFITTKFHILITKSL---GQHVIFFIYSSVHFCSVVFN 432 (515)
Q Consensus 375 ~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~---g~~~~~~~~~~~~~~~~~~~ 432 (515)
.|..|. .+|.+.|+.+..+.+++.++|.+.|.+.+.. +|...|.+.++..+++.++.
T Consensus 387 ~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~ 446 (465)
T TIGR00894 387 LDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFY 446 (465)
T ss_pred hhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHe
Confidence 677664 8999999999999999999999999988653 36677888777777776554
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-31 Score=262.08 Aligned_cols=378 Identities=11% Similarity=-0.003 Sum_probs=272.6
Q ss_pred ccccchhHHHHHHHHHHHHHHhhhhhccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhh
Q psy15227 3 VFKRSYVYQIIATNTASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEK 82 (515)
Q Consensus 3 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr 82 (515)
..++.+++.+...+.+.+..+...++.....+.+|.+.+ +++ .|+.+.++..+.+.+++.+++++.|+++||
T Consensus 3 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~-----~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr 74 (406)
T PRK15402 3 PLARLGRQALLFPLCLVLFEFATYIANDMIQPGMLAVVE---DFN-----AGAEWVPTSMTAYLAGGMFLQWLLGPLSDR 74 (406)
T ss_pred hHHHhhHHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHH---HhC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556677777888888888888888888888887765 588 999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhhhHHHHHHH
Q psy15227 83 IGRKTTLLLNALLCLPTWFLVVSN-KIECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAIL 161 (515)
Q Consensus 83 ~Grr~~l~~~~~l~~i~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~ 161 (515)
+|||+++..+..+..++.+++.++ +++.+++.|+++|++.+...+...+.+.|++|+++|.+..++......+|..++|
T Consensus 75 ~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 154 (406)
T PRK15402 75 IGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGP 154 (406)
T ss_pred hCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999 9999999999999999988888999999999999999998888877777888888
Q ss_pred HHhhHH----HhHHHHHhhhHHHHHHHHHhh-cccCcchhhhhcCChhHHHHHHHhhcCCCcChHHHHHHHHHHhhhhhh
Q psy15227 162 LIGNHV----SYNSLNIALSILPVIFFILFS-FVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLK 236 (515)
Q Consensus 162 ~l~~~l----~wr~~f~i~~~~~~~~~~~~~-~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (515)
.++..+ +||+.|++.++..++..+..+ ..||+++.. +++. . .++
T Consensus 155 ~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---------------~-------------~~~ 203 (406)
T PRK15402 155 LVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAGRV---GEKL---------------S-------------LKE 203 (406)
T ss_pred HHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCccc---cccc---------------c-------------HHH
Confidence 776554 899999998888776665443 467754210 0000 0 000
Q ss_pred chhhhhhhhccccchhHHHHHHHHHHHHHhhchHHHHHHHHhhhc-ccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhh
Q psy15227 237 SKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLP-KLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDIL 315 (515)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~ 315 (515)
...+++++++++..+..... ..+.. ........+.|.++. +.|.++.+.+.......++.+++.++.+++.||+
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~ 278 (406)
T PRK15402 204 LGRDYKLVLKNRRFVAGALA-LGLVS----LPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRR 278 (406)
T ss_pred HHHHHHHHHcCcHHHHHHHH-HHHHH----HHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 11234456665543322111 11111 112233445566553 4677766667666667778889999999999999
Q ss_pred CCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHH
Q psy15227 316 GRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALA 395 (515)
Q Consensus 316 grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~ 395 (515)
++|+.+..+.+...++...+....... ....+.......+.+.+.....+......... +++++|++.+..+....
T Consensus 279 ~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~ 354 (406)
T PRK15402 279 PLRSLIRMGLWPMVAGLLLAALATVIS---SHAYLWLTAGLSLYAFGIGLANAGLYRLTLFS-SDVSKGTVSAAMGMLSM 354 (406)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHcc---cccHHHHHHHHHHHHHHHHHHhhhHHHHHhhh-ccccccHHHHHHHHHHH
Confidence 999988888777766666655432110 12233344555566666644444444444333 45789999999999999
Q ss_pred HHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHH
Q psy15227 396 FGSFITTKFHILITKSLGQHVIFFIYSSVHFCS 428 (515)
Q Consensus 396 lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~ 428 (515)
++..+++.+.+.+.+..++.......++..++.
T Consensus 355 ~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~ 387 (406)
T PRK15402 355 LIFTVGIELSKHAYLGGGNGLFNLFNLANGLLW 387 (406)
T ss_pred HHHHHHHHHHHhcccCCchHHHHHHHHHHHHHH
Confidence 999999999999988888664444433333333
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-31 Score=259.88 Aligned_cols=363 Identities=14% Similarity=0.162 Sum_probs=259.0
Q ss_pred HHHHHHHHHhhhhhccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHHHHHHH
Q psy15227 15 TNTASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNAL 94 (515)
Q Consensus 15 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~~~~~ 94 (515)
....+++.+..+.......+.+|.+.+ |+| .+..+.|++.+.+.+++.++++++|+++||+|||+++..+.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g-----~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~ 76 (382)
T PRK10091 5 ILSLALGTFGLGMAEFGIMGVLTELAH---DVG-----ISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVA 76 (382)
T ss_pred HHHHHHHHHHHHhhHHHHHhChHHHHH---HcC-----CCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHH
Confidence 344555667777777788888888765 588 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh-hhhHHHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhhhHHHHHHHHHhhHH----Hh
Q psy15227 95 LCLPTWFLVVSN-KIECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHV----SY 169 (515)
Q Consensus 95 l~~i~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~l----~w 169 (515)
+.+++.++++++ |++.+++.|+++|++.+...+....++.|++++++|++++++...+..+|..+++.++..+ +|
T Consensus 77 ~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw 156 (382)
T PRK10091 77 LCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSW 156 (382)
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccH
Confidence 999999999999 9999999999999999998888889999999999999999999999999988888777554 89
Q ss_pred HHHHHhhhHHHHHHHHHh-hcccCcchhhhhcCChhHHHHHHHhhcCCCcChHHHHHHHHHHhhhhhhchhhhhhhhccc
Q psy15227 170 NSLNIALSILPVIFFILF-SFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGYLELLTNK 248 (515)
Q Consensus 170 r~~f~i~~~~~~~~~~~~-~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (515)
|+.|++.+++.++..+.. .++||.++ +.+.+ . +.. .+.++++
T Consensus 157 r~~f~~~~~~~~~~~~~~~~~lp~~~~----~~~~~---------------~-----------------~~~-~~~~~~~ 199 (382)
T PRK10091 157 RYTFLLIAVFNIAVLASIYFWVPDIRD----EAKGG---------------L-----------------REQ-FHFLRSP 199 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCc----ccccC---------------H-----------------HHH-HHHhcCh
Confidence 999999988876665543 34777531 00000 0 000 1223332
Q ss_pred cchhHHHHHHHHHHHHHhhchHHHHHHHHhhhc-ccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHH
Q psy15227 249 SNRRAFTLVMAASLFQRLGGITSMITYSSTLLP-KLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAAL 327 (515)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~ 327 (515)
..+. ........ ..+......+.+.++. ..|.++.+.+.......++.++++++.+++.||+++|+.+..+..+
T Consensus 200 ~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~ 274 (382)
T PRK10091 200 APWL----IFAATMFG-NAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFI 274 (382)
T ss_pred HHHH----HHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHH
Confidence 2221 11111111 1112223334444444 4688878888888999999999999999999999999988887777
Q ss_pred HHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhcccc-hhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHH
Q psy15227 328 GCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGC-LPNILVSELFPINVRCQASSCASVALAFGSFITTKFHI 406 (515)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g 406 (515)
.+++.+++... .+..+...+..++.+.+..+..+ .......+..|++.++.+ ..+....+|..++|.+.|
T Consensus 275 ~~i~~~~~~~~-------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G 345 (382)
T PRK10091 275 IVLALLMLFFF-------GGMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGG 345 (382)
T ss_pred HHHHHHHHHHH-------HhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhH
Confidence 66665544331 12223334444444444433333 332344455555555544 346778999999999999
Q ss_pred HHHhh-hchhHHHHHHHHHHHHHHHHHHHHh
Q psy15227 407 LITKS-LGQHVIFFIYSSVHFCSVVFNYFYL 436 (515)
Q Consensus 407 ~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~ 436 (515)
.+.|. .+++..+...++++.+...+...+.
T Consensus 346 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (382)
T PRK10091 346 MMLTLGLAYNYVALPAALLSFAAMSSLLLYG 376 (382)
T ss_pred HHHHcccCcchHHHHHHHHHHHHHHHHHHHh
Confidence 99996 5787777777666665555443433
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-30 Score=253.86 Aligned_cols=355 Identities=14% Similarity=0.097 Sum_probs=261.1
Q ss_pred HHHHHHHHHhhhhhccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHHHHHHH
Q psy15227 15 TNTASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNAL 94 (515)
Q Consensus 15 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~~~~~ 94 (515)
+....++.++.+...+...+.+|.+.+ ++| .|+.+.|++.+.+.++..+++++.|+++||+|||+++..+.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~lp~~~~---~~~-----~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~ 79 (381)
T PRK03633 8 VLLLLCGLLLLTLAIAVLNTLVPLWLA---QEH-----LPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASL 79 (381)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHH---HcC-----CCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 344456667788899999999998876 478 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh-hhhHHHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhhhHHHHHHHHHhhHHH---hH
Q psy15227 95 LCLPTWFLVVSN-KIECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHVS---YN 170 (515)
Q Consensus 95 l~~i~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~l~---wr 170 (515)
+.+++.++++++ +++.+++.|+++|++.+...+...+.+.+..++++|+++++..+.+.++|..+++.++..+. ++
T Consensus 80 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~ 159 (381)
T PRK03633 80 IFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMS 159 (381)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 999999999999 99999999999999999988888888889999999999999999999999999999987761 12
Q ss_pred HHHHhhhHHHHHHHHHhh-cccCcchhhhhcCChhHHHHHHHhhcCCCcChHHHHHHHHHHhhhhhhchhhhhhhhcccc
Q psy15227 171 SLNIALSILPVIFFILFS-FVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGYLELLTNKS 249 (515)
Q Consensus 171 ~~f~i~~~~~~~~~~~~~-~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (515)
...+..+..........+ ..+|++. + ++++.+.++.++++.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------~--~~~~~~~~~~~~~~~ 201 (381)
T PRK03633 160 VLPWVTGLVLAAILPLLFTRILNQQA------------------------------------E--NHDSTSIWPMLKLRQ 201 (381)
T ss_pred hHHHHHHHHHHHHHHHHHhcccCCCC------------------------------------C--CCCCCCHHHHHHhcc
Confidence 222322222221111111 1222100 0 000112344555554
Q ss_pred chhHHHHHHHHHHHHHhhchHHHHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHH
Q psy15227 250 NRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGC 329 (515)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~ 329 (515)
.+.. ........ ........+.|.+.++.|.+....+.......+..+++++..+++.||+++|+.+..+.....
T Consensus 202 ~~~~-~~~~~~~~----~~~~~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~ 276 (381)
T PRK03633 202 ARLG-VNGCIISG----IVLGSLYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVI 276 (381)
T ss_pred hHHH-HHHHHHHH----HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHH
Confidence 3321 11111111 122344566788888788887777888888889999999999999999999998877766666
Q ss_pred HHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy15227 330 LLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILIT 409 (515)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~ 409 (515)
++...+.. . ........+.+.+.....|...++..|..|+++++.+.+..+...++|..++|.+.|.+.
T Consensus 277 ~~~~~~~~--------~---~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~ 345 (381)
T PRK03633 277 LGSIAMLS--------Q---AAMAPALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLM 345 (381)
T ss_pred HHHHHHhh--------h---HHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65443321 1 112223344444445556777788889988888888888888889999999999999999
Q ss_pred hhhchhHHHHHHHHHHHHHHHH
Q psy15227 410 KSLGQHVIFFIYSSVHFCSVVF 431 (515)
Q Consensus 410 ~~~g~~~~~~~~~~~~~~~~~~ 431 (515)
|+.|+...|.+.+.+.++..+.
T Consensus 346 ~~~g~~~~f~~~~~~~l~~~~~ 367 (381)
T PRK03633 346 QNYSDNLLFIMIASVSFIYLLM 367 (381)
T ss_pred HHhCccHHHHHHHHHHHHHHHH
Confidence 9999988888877777655433
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.9e-30 Score=257.38 Aligned_cols=366 Identities=16% Similarity=0.100 Sum_probs=262.4
Q ss_pred HHHHHHHhhhhhccchhhhhhcccCCCCcccccccccchhh-----HHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHHHH
Q psy15227 17 TASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQ-----LSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLL 91 (515)
Q Consensus 17 ~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~-----~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~~ 91 (515)
...++.++.+...+...+.+|.+.+ ++| .+..+ .|++.+++.++..++++++|+++||+|||+++..
T Consensus 18 ~~~~~~~~~~~~~~~~~~~l~~~~~---~~g-----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~ 89 (408)
T PRK09874 18 VAWLGCFLTGAAFSLVMPFLPLYVE---QLG-----VTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLR 89 (408)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHH---HhC-----CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHH
Confidence 3445566677777778888887765 366 66443 4899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhh-hhhHHHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhhhHHHHHHHHHhhHH---
Q psy15227 92 NALLCLPTWFLVVSN-KIECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHV--- 167 (515)
Q Consensus 92 ~~~l~~i~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~l--- 167 (515)
+.++..++.+++.+. +++.+++.|++.|++.+ ..+....++.|++|+++|+++.++...+..+|..+++.+++.+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 168 (408)
T PRK09874 90 SALGMGIVMVLMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADS 168 (408)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998888 99999999999999865 4577788899999999999999999999899888888887654
Q ss_pred -HhHHHHHhhhHHHHHHHHHhh-cccCcchhhhhcCChhHHHHHHHhhcCCCcChHHHHHHHHHHhhhhhhchhhhhhhh
Q psy15227 168 -SYNSLNIALSILPVIFFILFS-FVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGYLELL 245 (515)
Q Consensus 168 -~wr~~f~i~~~~~~~~~~~~~-~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (515)
+||+.|++.+++.++..+..+ ++||+++.. ++.+ . .+..+..+.+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~----------------~--------------~~~~~~~~~~ 215 (408)
T PRK09874 169 YGLRPVFFITASVLFLCFLVTLFCIRENFQPV---SKKE----------------M--------------LHMREVVTSL 215 (408)
T ss_pred hCHHHHHHHHHHHHHHHHHHHHHHhccCcccc---cchh----------------h--------------hHHHHHHHhC
Confidence 899999998888776655544 456643110 0000 0 0000112334
Q ss_pred ccccchhHHHHHHHHHHHHHhhchHHHHHHHHhhhcccCCCCCC----cchhHHHHHHHHHHHHHHHHHHHhhhCCchhH
Q psy15227 246 TNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFG----PDQCILVFMIIMFLSNFLQAPLMDILGRKPLS 321 (515)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~ 321 (515)
++++.+............ .......+.+.+..+.+.+..+ .+......+++.+++.+..|++.||++||+.+
T Consensus 216 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~ 291 (408)
T PRK09874 216 KNPKLVLSLFVTTLIIQV----ATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKIL 291 (408)
T ss_pred cCCchHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhH
Confidence 444333222221111111 1223334445555443322122 23344455677788889999999999999998
Q ss_pred HHhhHHHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHH
Q psy15227 322 CFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFIT 401 (515)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~ 401 (515)
..+..+..++.+.+.. .++.+...+...+.+++.+...+...+...+..|++.+|+..++.+....+|..++
T Consensus 292 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~g 363 (408)
T PRK09874 292 ITALIFSVLLLIPMSF--------VQTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTG 363 (408)
T ss_pred HHHHHHHHHHHHHHHH--------hccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhh
Confidence 8877766655554443 23344455555566666666667777778888899999999999999999999999
Q ss_pred HHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHh
Q psy15227 402 TKFHILITKSLGQHVIFFIYSSVHFCSVVFNYFYL 436 (515)
Q Consensus 402 ~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 436 (515)
|.+.|.+.+..|++..|.+.+++.+++.+..+...
T Consensus 364 p~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~ 398 (408)
T PRK09874 364 PLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNSL 398 (408)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888888777664433
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=2e-30 Score=264.61 Aligned_cols=381 Identities=14% Similarity=0.084 Sum_probs=275.3
Q ss_pred HHHHHHHHHHhhhhhccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHHHHHH
Q psy15227 14 ATNTASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNA 93 (515)
Q Consensus 14 ~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~~~~ 93 (515)
+...++++.++..++....++.+|.+.+ ++| .+..+.+++.+.+.++..++.++.|+++||+|||+++..+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~---~~g-----~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~ 74 (485)
T TIGR00711 3 LTIVLMLGTFMAVLDSTIVNVAIPTIAG---DLG-----SSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLIST 74 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcC-----CChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHH
Confidence 4566777888899999999999998876 588 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhh-hhhHHHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhhhHHHHHHHHHhhHH----H
Q psy15227 94 LLCLPTWFLVVSN-KIECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHV----S 168 (515)
Q Consensus 94 ~l~~i~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~l----~ 168 (515)
++..++.++++++ +++.++++|+++|++.+...+...+++.|++|+++|+++++++..+..+|..+++.+++.+ +
T Consensus 75 ~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~ 154 (485)
T TIGR00711 75 FAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYH 154 (485)
T ss_pred HHHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcC
Confidence 9999999999999 9999999999999999999999999999999999999999999999999999998888765 8
Q ss_pred hHHHHHhhhHHHHHHHHHhh-cccCcchhhhhcCChhHHHHHH--------H-h-hcCCCcC--hHHHHH-HH-------
Q psy15227 169 YNSLNIALSILPVIFFILFS-FVPETPHFHAAKNNLKKTEKSL--------K-W-YRGNKKD--VMEEMN-SI------- 227 (515)
Q Consensus 169 wr~~f~i~~~~~~~~~~~~~-~~pesp~~~~~~~~~~~~~~~~--------~-~-~~~~~~~--~~~~~~-~~------- 227 (515)
||+.|++.+.++++..+... +.||+++. .+++.+.....+ . . .++.+.+ ...+.. ..
T Consensus 155 w~~~f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (485)
T TIGR00711 155 WRWIFLINVPIGIIVVVVAFFILPRDKPA--ASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAI 232 (485)
T ss_pred ceehhhhhhHHHHHHHHHHHHHcCCcccc--ccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHH
Confidence 99999998888776665544 46764431 111222111100 0 0 0111100 000000 00
Q ss_pred --HHHhhhhhhchhhhhhhhccccchhHHHHHHHHHHHHHhhchHHHHHHHHhhhcc-cCCCCCCcchhHHHHHHHHHHH
Q psy15227 228 --MDKTQEDLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPK-LDNAYFGPDQCILVFMIIMFLS 304 (515)
Q Consensus 228 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~ 304 (515)
....+.+++++....++++++.++......+... ........+.|.++++ .|.++.+++.......++.+++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~ 307 (485)
T TIGR00711 233 IAFVVWELTDDNPLVDLRLFKYRNFTIGCVYMSLLG-----LGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLS 307 (485)
T ss_pred HHHHHHHHcCCCCccCHHHHcCCChHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 0000011111111234566654443322222211 2234455677877766 5888888899999999999999
Q ss_pred HHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchhhh
Q psy15227 305 NFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRC 384 (515)
Q Consensus 305 ~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~ 384 (515)
.++.|++.||++||+.+..+..+.+++...+..... .....+.......+.+++.+...+.......+..|+++++
T Consensus 308 ~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g 383 (485)
T TIGR00711 308 SPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFT----PDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIA 383 (485)
T ss_pred HHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHh
Confidence 999999999999999988887777766665542110 1222333444455666666444444445666778999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy15227 385 QASSCASVALAFGSFITTKFHILITKSLG 413 (515)
Q Consensus 385 ~~~g~~~~~~~lg~~~~~~~~g~l~~~~g 413 (515)
++.|+.+....+|+.+++.+.+.+.++..
T Consensus 384 ~~~~~~~~~~~~g~~ig~~i~g~~~~~~~ 412 (485)
T TIGR00711 384 RGSSLSNFTRQLGGSIGTALITTILTNRT 412 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999887543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.1e-31 Score=260.65 Aligned_cols=367 Identities=14% Similarity=0.100 Sum_probs=251.7
Q ss_pred HHhhhhhccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHHHHHHHHHHHHHH
Q psy15227 22 LLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALLCLPTWF 101 (515)
Q Consensus 22 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~ 101 (515)
.+...++....+...|.+.+ +++ .+..+.+++.+.+.++..+++++.|+++||+|||+++..+.++..++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~---~~g-----~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 75 (379)
T TIGR00881 4 YAAYYLVRKNFALAMPYLVE---EIG-----LSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNL 75 (379)
T ss_pred hhHHHHhHHhhhhhhHHHHH---HhC-----CCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHH
Confidence 34555667777777887765 588 9999999999999999999999999999999999999999999999999
Q ss_pred HHHhh-hhhHHHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhhhHHHHHHH-HHhhH----HHhHHHHHh
Q psy15227 102 LVVSN-KIECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAIL-LIGNH----VSYNSLNIA 175 (515)
Q Consensus 102 ~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~-~l~~~----l~wr~~f~i 175 (515)
++.++ +++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+++ .++.. .+||+.|++
T Consensus 76 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 155 (379)
T TIGR00881 76 FFGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIV 155 (379)
T ss_pred HHHHhhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHH
Confidence 99999 9999999999999999999999999999999999999999999999999999988 34433 389999998
Q ss_pred hhHHHHHHHHHhh-cccCcchhhhhcCChhHHHHHHHhhcCCCcChHHHHHHHHHHhhhhhhchhhhhhhhccccchhHH
Q psy15227 176 LSILPVIFFILFS-FVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGYLELLTNKSNRRAF 254 (515)
Q Consensus 176 ~~~~~~~~~~~~~-~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (515)
.+++.++..+..+ +.||+|+....++++++. ..+. ++ ++ +++.++.+..+...+++++++..+...
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~--~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (379)
T TIGR00881 156 PGIIAIIVSLICFLLLRDSPQSCGLPPAEEMP--------NEEP--DG--DA-EKKEEELTKKQIFLQYVLLNKVLWYIS 222 (379)
T ss_pred HHHHHHHHHHHHheeeCCCccccccCccccCc--------cccc--cc--cc-ccccccccchHHHHHHHHhcchHHHHH
Confidence 8887766554444 567766432111100000 0000 00 00 000000111122344556654333221
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHhhhcc-cCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHH
Q psy15227 255 TLVMAASLFQRLGGITSMITYSSTLLPK-LDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTF 333 (515)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~ 333 (515)
+. .+...........+.|.++.+ .|.+..+.+.......+..+++.++.+++.||..+|+..............
T Consensus 223 ~~-----~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~ 297 (379)
T TIGR00881 223 LG-----YVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIV 297 (379)
T ss_pred HH-----HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence 11 111122234556677777654 588877888888899999999999999999986433222121211111111
Q ss_pred HHHHHHHhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy15227 334 STGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLG 413 (515)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~g 413 (515)
.+..... ....+.+.......+.+....+..+....+..|.+|++.|+++.|+.+....+|+.++|.+.|.+.|+.|
T Consensus 298 ~~~~~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g 374 (379)
T TIGR00881 298 SLLVYWL---NPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFG 374 (379)
T ss_pred HHHHHhc---CcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhc
Confidence 1111111 0011222233333344433344445556778999999999999999999999999999999999999998
Q ss_pred hhHH
Q psy15227 414 QHVI 417 (515)
Q Consensus 414 ~~~~ 417 (515)
++..
T Consensus 375 ~~~~ 378 (379)
T TIGR00881 375 WAGA 378 (379)
T ss_pred cccc
Confidence 8643
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.8e-30 Score=253.37 Aligned_cols=347 Identities=14% Similarity=0.028 Sum_probs=258.4
Q ss_pred HHHHHhhhhhccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHHHHHHHHHHH
Q psy15227 19 SISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALLCLP 98 (515)
Q Consensus 19 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~~~~~l~~i 98 (515)
.++.++..+..+...+.+|.+.. +++ .++.+.+++.+++.++..+++++.|+++||+|||+++..+.++..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~---~~~-----~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~ 76 (365)
T TIGR00900 5 FAAQLISLIGTAITQVALPLYVL---AGT-----GSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAV 76 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---Hhh-----ccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHH
Confidence 34555666677777778787655 467 8999999999999999999999999999999999999999888887
Q ss_pred HHHHHHhh------hhhHHHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhhhHHHHHHHHHhhHH----H
Q psy15227 99 TWFLVVSN------KIECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHV----S 168 (515)
Q Consensus 99 ~~~~~~~~------~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~l----~ 168 (515)
+.++..+. +++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.++..+ +
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g 156 (365)
T TIGR00900 77 LVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLG 156 (365)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 77766554 6789999999999999999999999999999999999999999999999999998887665 8
Q ss_pred hHHHHHhhhHHHHHHHHHhhcc--cCcchhhhhcCChhHHHHHHHhhcCCCcChHHHHHHHHHHhhhhhhchhhhhhhhc
Q psy15227 169 YNSLNIALSILPVIFFILFSFV--PETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGYLELLT 246 (515)
Q Consensus 169 wr~~f~i~~~~~~~~~~~~~~~--pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (515)
||+.|++.++..++..+..+.+ ||+++. ++ ++ .+++ ..++....+++.++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~--------------~~~~---------~~~~~~~~~~~~~~ 208 (365)
T TIGR00900 157 IKWAIWVDAVGFAISALLIVSVRIPELAAS----EI-QA--------------LSNA---------VLRDTREGIKFVLK 208 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccCCCc----cc-cc--------------cchh---------HHHHHHhHHHHHHc
Confidence 9999998887766655544433 332210 00 00 0000 00011123445566
Q ss_pred cccchhHHHHHHHHHHHHHhhchHHHHHHHHhhhcc-cCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhh
Q psy15227 247 NKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPK-LDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSA 325 (515)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~ 325 (515)
++..+........... ........+.|.+.++ .+.+..+.+.......++.+++.++.+++.||.+||+.+..+.
T Consensus 209 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 284 (365)
T TIGR00900 209 NPLLRTLLLLALLFNL----VFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAI 284 (365)
T ss_pred CcHHHHHHHHHHHHHH----HHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHH
Confidence 5443322222111111 1112223566777765 6777778888888899999999999999999999999888776
Q ss_pred HHHHHHHHHHHHHHHhhCCCCC-CccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHH
Q psy15227 326 ALGCLLTFSTGLFYLYQGELPN-FQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKF 404 (515)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~ 404 (515)
.+.+++...+.. .. +.+...+..++.+++.....+...++..|.+|++.|+++.|+.+...+++..++|.+
T Consensus 285 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~ 356 (365)
T TIGR00900 285 FVIGLAILVVGL--------TPPNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLIL 356 (365)
T ss_pred HHHHHHHHHHHh--------hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666555444 22 244555666667777666677778899999999999999999999999999999999
Q ss_pred HHHHHhhhc
Q psy15227 405 HILITKSLG 413 (515)
Q Consensus 405 ~g~l~~~~g 413 (515)
.|.+.|+.|
T Consensus 357 ~g~l~~~~g 365 (365)
T TIGR00900 357 AGPLADHLG 365 (365)
T ss_pred HHHHHHHcC
Confidence 999998754
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=257.36 Aligned_cols=378 Identities=12% Similarity=0.082 Sum_probs=266.8
Q ss_pred HHHHHHHHHhhhhhccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHHHHHHH
Q psy15227 15 TNTASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNAL 94 (515)
Q Consensus 15 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~~~~~ 94 (515)
...++++.++..++....++.+|.+.+ ++| .++.+.+++.+.+.++..++.+++|+++||+|||++++.+.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~p~~~~---~~g-----~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~ 83 (471)
T PRK10504 12 LWIVAFGFFMQSLDTTIVNTALPSMAQ---SLG-----ESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIV 83 (471)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH---HhC-----cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH
Confidence 345556677788888888888998865 588 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh-hhhHHHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhhhHHHHHHHHHhhHH----Hh
Q psy15227 95 LCLPTWFLVVSN-KIECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHV----SY 169 (515)
Q Consensus 95 l~~i~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~l----~w 169 (515)
+.+++.+++.++ +++.++++|+++|++.+...+...+++.|++|+++|+++.++.....++|..++|.+++.+ +|
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw 163 (471)
T PRK10504 84 LFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASW 163 (471)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccH
Confidence 999999998888 9999999999999999999999999999999999999999999988888888888887654 89
Q ss_pred HHHHHhhhHHHHHHHHHhh-cccCcchhhhhcCChhHHHHHHHh---------hcCCCc--ChHHHHH-----------H
Q psy15227 170 NSLNIALSILPVIFFILFS-FVPETPHFHAAKNNLKKTEKSLKW---------YRGNKK--DVMEEMN-----------S 226 (515)
Q Consensus 170 r~~f~i~~~~~~~~~~~~~-~~pesp~~~~~~~~~~~~~~~~~~---------~~~~~~--~~~~~~~-----------~ 226 (515)
|+.|++......+..+... ..|+.+. .+.+.+........ ..+.+. ....... .
T Consensus 164 ~~~f~~~~~~~~l~~~~~~~~~~~~~~---~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (471)
T PRK10504 164 HWIFLINIPVGIIGAIATLMLMPNYTM---QTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLL 240 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCccc---cCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHH
Confidence 9999998877766555544 3455432 11122221111000 001000 0000000 0
Q ss_pred HHHHhhhhhhchhhhhhhhccccchhHHHHHHHHHHHHHhhchHHHHHHHHhhhcc-cCCCCCCcchhHHHHHHHHHHHH
Q psy15227 227 IMDKTQEDLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPK-LDNAYFGPDQCILVFMIIMFLSN 305 (515)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~ 305 (515)
...++++.+++..+ .++++++.++... ...++. ..+......+.|++++. .|.++.+.+.......++.+++.
T Consensus 241 ~~~~~~~~~~~~~~-~~l~~~~~~~~~l-~~~~~~----~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~ 314 (471)
T PRK10504 241 YLLHARNNNRALFS-LKLFRTRTFSLGL-AGSFAG----RIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMK 314 (471)
T ss_pred HHHHHhcCCCCccC-HHHhcccchHHHH-HHHHHH----HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 00000111111112 2466665443322 111111 12234555667777764 68877788888888888888888
Q ss_pred HHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhh
Q psy15227 306 FLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQ 385 (515)
Q Consensus 306 ~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~ 385 (515)
++.+++.||+|||+.+..+..+.++...++..... ....+.......+.+.+.+...+.......+.+|++.++.
T Consensus 315 ~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~ 389 (471)
T PRK10504 315 RIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVAL-----LGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASS 389 (471)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccc-----cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccc
Confidence 99999999999999988887777766555443110 1222222233344445554455556678888899999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhch
Q psy15227 386 ASSCASVALAFGSFITTKFHILITKSLGQ 414 (515)
Q Consensus 386 ~~g~~~~~~~lg~~~~~~~~g~l~~~~g~ 414 (515)
+.|+.++...+|..+++.+.|.+.+..|+
T Consensus 390 ~~~~~~~~~~~g~~ig~~i~g~ll~~~g~ 418 (471)
T PRK10504 390 GNSLLSMIMQLSMSIGVTIAGLLLGLFGQ 418 (471)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999887765
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.9e-30 Score=251.28 Aligned_cols=357 Identities=12% Similarity=0.076 Sum_probs=252.4
Q ss_pred HHHHhhhhhccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHHHH-HHHHHHH
Q psy15227 20 ISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLL-NALLCLP 98 (515)
Q Consensus 20 l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~~-~~~l~~i 98 (515)
+..+..++..+...|.+|....+ ++| .|+.+.|++.+.+.++..+.+++.|+++||+||||.++. +..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~l~~~l~~--~~g-----~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~ 76 (375)
T TIGR00899 4 LVAFLTGIAGALQFPTLSLFLSE--EVR-----ARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAAL 76 (375)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHc--ccC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 34566677777788888864322 588 999999999999999999999999999999999887654 5666677
Q ss_pred HHHHHHhh-hhhHHHHHHHHhhhhhhhcccchhhhhhccccccccccc--ccccchhhhHHHHHHHHHhhHH----HhHH
Q psy15227 99 TWFLVVSN-KIECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGAL--GSIPSGFQMVGTLAILLIGNHV----SYNS 171 (515)
Q Consensus 99 ~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~--~~~~~~~~~lG~~~~~~l~~~l----~wr~ 171 (515)
+.++++++ +++.+++.|++.|.+.+...|...+++.|+.|+++|++. .+....+.++|..+++.++..+ +||+
T Consensus 77 ~~~~~~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~ 156 (375)
T TIGR00899 77 ACLLFAWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTV 156 (375)
T ss_pred HHHHHHhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHH
Confidence 77888888 999999999999988888888888889999887777654 5666667777777777776544 8999
Q ss_pred HHHhhhHHHHHHHHHhh-cccCcchhhhhcCChhHHHHHHHhhcCCCcChHHHHHHHHHHhhhhhhchhhhhhhhccccc
Q psy15227 172 LNIALSILPVIFFILFS-FVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGYLELLTNKSN 250 (515)
Q Consensus 172 ~f~i~~~~~~~~~~~~~-~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (515)
.|++.++..++..+..+ ++||+|++...++ ++.+.++.++++..
T Consensus 157 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~ 201 (375)
T TIGR00899 157 MFLTAALAFVLCGVLVWLFLPSYPRGAPGAL-----------------------------------TRLEVRGLLASRDT 201 (375)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcccCccccc-----------------------------------CcchhhhhhcCcch
Confidence 99999888776665544 4788764210000 00011223343333
Q ss_pred hhHHHHHHHHHHHHHhhchHHHHHHHHhhh-cccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHH
Q psy15227 251 RRAFTLVMAASLFQRLGGITSMITYSSTLL-PKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGC 329 (515)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~ 329 (515)
+.. ......... .......+.|.++ ++.|.++.+.+...........++.++.+++.||++||+.+..+.....
T Consensus 202 ~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~ 276 (375)
T TIGR00899 202 RLL-FVACTLMWG----CNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGV 276 (375)
T ss_pred HHH-HHHHHHHHH----HHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHH
Confidence 322 121111111 1223334455555 4468777777777777677778889999999999999998877665544
Q ss_pred HHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy15227 330 LLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILIT 409 (515)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~ 409 (515)
+....+.. .++.+.......+.+++.+...+....+..|..|++ ++++.++.+...++|..++|.+.|.+.
T Consensus 277 ~~~~~~~~--------~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~ 347 (375)
T TIGR00899 277 AFYTGLAA--------DNSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILA 347 (375)
T ss_pred HHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44333322 122344444444555555555566677888988764 679999999999999999999999999
Q ss_pred hhhchhHHHHHHHHHHHHHHHHH
Q psy15227 410 KSLGQHVIFFIYSSVHFCSVVFN 432 (515)
Q Consensus 410 ~~~g~~~~~~~~~~~~~~~~~~~ 432 (515)
+..|++..+.+.+++.+++.++.
T Consensus 348 ~~~g~~~~~~~~~~~~~~~~~~~ 370 (375)
T TIGR00899 348 ERWSYHAVYWFAIVMLIVALFCL 370 (375)
T ss_pred HhccchhHHHHHHHHHHHHHHHH
Confidence 99999988888887777766654
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-29 Score=250.07 Aligned_cols=368 Identities=11% Similarity=0.037 Sum_probs=248.6
Q ss_pred HHHHHhhhhhccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHHHHHHHHHHH
Q psy15227 19 SISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALLCLP 98 (515)
Q Consensus 19 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~~~~~l~~i 98 (515)
.++.+......+...+.+|.+.+ ++| .|+.+.|++.+.+.++..+++++.|+++||+|||+++..+..+.++
T Consensus 19 ~l~~~~~~~~~~~~~~~~~~~~~---~~g-----~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~ 90 (402)
T TIGR00897 19 YIGVVVFMTGDGLEQGWLSPFLK---ALG-----LSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCV 90 (402)
T ss_pred HHHHHHHHHhhhhHHHhHHHHHH---HhC-----CCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 33333333333333344444433 477 9999999999999999999999999999999999999999999998
Q ss_pred HHHHHH---h-h-hhhHHHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhhhHHH-HHHHHHhhHH----H
Q psy15227 99 TWFLVV---S-N-KIECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGT-LAILLIGNHV----S 168 (515)
Q Consensus 99 ~~~~~~---~-~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~-~~~~~l~~~l----~ 168 (515)
+++++. . . +++.+++.|++.|++.+...+...+.+.+++|+++|++++++.+.+.++|. .+++.+++.+ |
T Consensus 91 ~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g 170 (402)
T TIGR00897 91 GHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFG 170 (402)
T ss_pred HHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 877653 3 3 788889999999999988888888889999999999999999999999986 5778776543 7
Q ss_pred hHHHHHhhhHHHHHHHHHhh-cccCcchhhhhcCChhHHHHHHHhhcCCCcChHHHHHHHHHHhhhhhhchhhhhhhhcc
Q psy15227 169 YNSLNIALSILPVIFFILFS-FVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGYLELLTN 247 (515)
Q Consensus 169 wr~~f~i~~~~~~~~~~~~~-~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (515)
|+..++......++..+..+ +.++.++. ++++++ . + .++.+..+++++++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-------------~----~----------~~~~~~~~~~~~~~ 221 (402)
T TIGR00897 171 EMNTLWSALAFVLTGGVIALFSNKDIFTP--QHMQTR-------------E----K----------FSELGKAATILFTN 221 (402)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccCCCCCc--ccccCC-------------c----c----------hhhHHHHHHHHHcC
Confidence 66555544433333332222 33432110 000000 0 0 00001123456665
Q ss_pred ccchhHHHHHHHHHHHHHhhchHHHHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHH-HhhH
Q psy15227 248 KSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSC-FSAA 326 (515)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~-~~~~ 326 (515)
|..+... ...+...........+.|.+.++.|++..+.+.......++..++.+..|+++||++||+... .+..
T Consensus 222 ~~~~~~~-----~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l 296 (402)
T TIGR00897 222 PNVLLGG-----MVRIINTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGV 296 (402)
T ss_pred hhHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Confidence 5433221 112222233456677889888888988777778778888999999999999999999888653 2223
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHH
Q psy15227 327 LGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHI 406 (515)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g 406 (515)
...+....+..... ...++.+...+..++.+.+.....+. .....|.. +++|+++.|+.+...++++.++|.+.|
T Consensus 297 ~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~-~~~~g~~~g~~~~~~~lg~~~gp~i~g 371 (402)
T TIGR00897 297 GCGIFTLALYYIPQ---HFGHSFAVALIIAIALGIFLAGYVPL-AAVFPTLA-PKHKGAAMSVLNLSAGLSAFLAPAIAV 371 (402)
T ss_pred HHHHHHHHHHHHHH---ccCCcHHHHHHHHHHHHHHHHHHHHH-HHHHHhhC-cchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33332222221111 00122334444555555555444443 34566764 468999999999999999999999999
Q ss_pred HHHhhhchhHHHHHHHHHHHHHHHHHH
Q psy15227 407 LITKSLGQHVIFFIYSSVHFCSVVFNY 433 (515)
Q Consensus 407 ~l~~~~g~~~~~~~~~~~~~~~~~~~~ 433 (515)
.+.|..|+...+++.+++.+++.+...
T Consensus 372 ~l~~~~g~~~~~~~~a~~~~i~~~~~~ 398 (402)
T TIGR00897 372 LFIGFFGAIGVVWIFAALYVVSAFLTA 398 (402)
T ss_pred HHHhhcchHHHHHHHHHHHHHHHHHHH
Confidence 999999999899988888777766653
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-29 Score=250.39 Aligned_cols=343 Identities=16% Similarity=0.129 Sum_probs=251.4
Q ss_pred HhhhhhccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHH
Q psy15227 23 LIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALLCLPTWFL 102 (515)
Q Consensus 23 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~ 102 (515)
+..........+.+|.+.+ ++| .++.+.+++.+.+.++..+++++.|+++||+|||+++..+.++..++.++
T Consensus 15 ~~~~~~~~~~~~~~p~~~~---~~g-----~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~ 86 (385)
T TIGR00710 15 ILGPLGIDMYLPAFPEIAA---DLS-----TPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLG 86 (385)
T ss_pred HHHHHHHHHhcccHHHHHH---HhC-----CCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHH
Confidence 4456667777788887765 588 99999999999999999999999999999999999999999999999999
Q ss_pred HHhh-hhhHHHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhhhHHHHHHHHHhhHH----HhHHHHHhhh
Q psy15227 103 VVSN-KIECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHV----SYNSLNIALS 177 (515)
Q Consensus 103 ~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~l----~wr~~f~i~~ 177 (515)
+.++ +++.+++.|++.|++.+...+...+++.|++|+++|+++.++.+....+|..+++.+++.+ +||+.+++.+
T Consensus 87 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~ 166 (385)
T TIGR00710 87 LALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLS 166 (385)
T ss_pred HHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 9999 9999999999999999999999999999999999999999999999999988888887654 8999999888
Q ss_pred HHHHHHHHHhh-cccCcchhhhhcCChhHHHHHHHhhcCCCcChHHHHHHHHHHhhhhhhchhhhhhhhccccchhHHHH
Q psy15227 178 ILPVIFFILFS-FVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGYLELLTNKSNRRAFTL 256 (515)
Q Consensus 178 ~~~~~~~~~~~-~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (515)
+..++..+..+ +.||+++.. ++ + +.++...++++.++++..+...+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~---~~-~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 214 (385)
T TIGR00710 167 LAGILLSALIFFILPETLPYE---AR-I----------------------------QISTYFETFLLLLKSKMFWGYALI 214 (385)
T ss_pred HHHHHHHHHHHHhCCCCCCCc---cc-C----------------------------CHHHHHHHHHHHHcCchhHHHHHH
Confidence 87776655544 467754210 00 0 000011223455565544332221
Q ss_pred HHHHHHHHHhhchHHHHHHHHhhhc-ccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHH
Q psy15227 257 VMAASLFQRLGGITSMITYSSTLLP-KLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFST 335 (515)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~ 335 (515)
... ..........+.|.+++ +.|.++.+.+.......++.+++.++.+++.||+++|+.+..+..+..++..++
T Consensus 215 ~~~-----~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 289 (385)
T TIGR00710 215 YGA-----SFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLL 289 (385)
T ss_pred HHH-----HHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 111 11123344555666655 568887788888888899999999999999999999998887776666665554
Q ss_pred HHHHHhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhch
Q psy15227 336 GLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQ 414 (515)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~ 414 (515)
....... ............+.+.+.....+.......|..| +.++++.++.+...+.++.+.+.+.+.+.+..++
T Consensus 290 ~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~ 364 (385)
T TIGR00710 290 EITAILG---LGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVSLIHGNTAW 364 (385)
T ss_pred HHHHHhc---cchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHHhccccChH
Confidence 4322100 1112223333445556565566666677788876 5789999999988887777777777755444343
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-29 Score=245.65 Aligned_cols=338 Identities=23% Similarity=0.268 Sum_probs=283.6
Q ss_pred HHHHHHhhhhhccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHHHHHHHHHH
Q psy15227 18 ASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALLCL 97 (515)
Q Consensus 18 ~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~~~~~l~~ 97 (515)
+.+..+...++.....+..|.+.+ +++ .++.+.+++.+.+.++..+++++.|+++||+|||+.+..+.++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~-----~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~ 75 (352)
T cd06174 4 LFLGFFLSGLDRGLLSPALPLLAE---DLG-----LSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFA 75 (352)
T ss_pred HHHHHHHHHHhhhhhHhhHHHHHH---HcC-----CCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHH
Confidence 445566777788888888887765 367 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhh-hhhHHHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhhhHHHHHHHHHhhHH----HhHHH
Q psy15227 98 PTWFLVVSN-KIECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHV----SYNSL 172 (515)
Q Consensus 98 i~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~l----~wr~~ 172 (515)
++.+...+. +++.+++.|++.|++.+...+...+++.|++|+++|++.+++.+....+|..+++.++..+ +||+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 155 (352)
T cd06174 76 LGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWL 155 (352)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 999999999 9999999999999999999999999999999999999999999999999999999888766 79999
Q ss_pred HHhhhHHHHHHHHHhhcccCcchhhhhcCChhHHHHHHHhhcCCCcChHHHHHHHHHHhhhhhhchhhhhhhhccccchh
Q psy15227 173 NIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGYLELLTNKSNRR 252 (515)
Q Consensus 173 f~i~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (515)
+++.+++.++..+...+++ +
T Consensus 156 ~~~~~~~~~~~~~~~~~~~------------------------------------------------------------~ 175 (352)
T cd06174 156 FLILAILGLLLALLLLFLL------------------------------------------------------------R 175 (352)
T ss_pred HHHHHHHHHHHHHHHHHHH------------------------------------------------------------H
Confidence 9998888777666554332 0
Q ss_pred HHHHHHHHHHHHHhhchHHHHHHHHhhhccc-CCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCch-hHHHhhHHHHH
Q psy15227 253 AFTLVMAASLFQRLGGITSMITYSSTLLPKL-DNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKP-LSCFSAALGCL 330 (515)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~-~~~~~~~~~~~ 330 (515)
. +.......+...........+.|.+.++. +.+..+.+.......++..++.++.+++.||++||+ .+..+..+..+
T Consensus 176 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i 254 (352)
T cd06174 176 L-LLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAAL 254 (352)
T ss_pred H-HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 1 11112222222333456667777777765 777778888999999999999999999999999999 88888888888
Q ss_pred HHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q psy15227 331 LTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITK 410 (515)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~ 410 (515)
+...+.. .++.+...+...+.+.+.....+....+..|..|+++|++..|+.+...+++..++|.+.+.+.+
T Consensus 255 ~~~~~~~--------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~ 326 (352)
T cd06174 255 GLLLLAL--------APSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLD 326 (352)
T ss_pred HHHHHHH--------hccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7777665 33455666667777777777788888999999999999999999999999999999999999999
Q ss_pred hhchhHHHHHHHHHHHHHHHHH
Q psy15227 411 SLGQHVIFFIYSSVHFCSVVFN 432 (515)
Q Consensus 411 ~~g~~~~~~~~~~~~~~~~~~~ 432 (515)
..+++..+.+.+++.+++.+..
T Consensus 327 ~~~~~~~~~~~~~~~~i~~i~~ 348 (352)
T cd06174 327 TGGYGGVFLILAALALLAALLL 348 (352)
T ss_pred ccCcchHHHHHHHHHHHHHHHh
Confidence 9999989998888888776654
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=251.50 Aligned_cols=356 Identities=20% Similarity=0.168 Sum_probs=246.7
Q ss_pred HhhhhhccchhhhhhcccCCCCcccccccccchhhHHHHHHH-----HHHHhhhhhhhHhhhhhhhhhhHHHHHHHHHHH
Q psy15227 23 LIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSL-----LDLGNAISPIFAGILVEKIGRKTTLLLNALLCL 97 (515)
Q Consensus 23 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~-----~~lg~~i~~~~~G~l~Dr~Grr~~l~~~~~l~~ 97 (515)
+.+.+|....+...+.+.++ ...+ .++.+.+.+.+. ..++..+++++.|+++||+|||+++..+.++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~ 76 (394)
T TIGR00883 3 AVEWFDFYLYGFAAVLVFHT-FFPP-----SGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMG 76 (394)
T ss_pred chhHHHHHHHHHHHHHHHHH-hcCC-----CCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHH
Confidence 34556666666666655442 1123 445566554443 334445789999999999999999999999999
Q ss_pred HHHHHHHhh-hhh--------HHHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhhhHHHHHHHHHhhH--
Q psy15227 98 PTWFLVVSN-KIE--------CLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNH-- 166 (515)
Q Consensus 98 i~~~~~~~~-~~~--------~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~-- 166 (515)
++.++++++ +++ .+++.|+++|++.+...+...+++.|++++++|++..++.+.+..+|..+++.++..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~ 156 (394)
T TIGR00883 77 IGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLS 156 (394)
T ss_pred HHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998 765 588899999999999999999999999999999999999999999999998876532
Q ss_pred ----------HHhHHHHHhhhHHHHHHHHHhhcccCcchhhhhcCChhHHHHHHHhhcCCCcChHHHHHHHHHHhhhhhh
Q psy15227 167 ----------VSYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLK 236 (515)
Q Consensus 167 ----------l~wr~~f~i~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (515)
.+||+.|++.+++.++........||+|++..+++ ++++
T Consensus 157 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~ 205 (394)
T TIGR00883 157 YLLGDDALLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQE-------------------------------KHKK 205 (394)
T ss_pred HhcCHHHhhccchHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHh-------------------------------cccc
Confidence 37999999887776665555555677654311100 0011
Q ss_pred chhhhhhhhccccchhHHHHHHHHHHHHHhhchHHHHHHHHhhh-cccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhh
Q psy15227 237 SKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLL-PKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDIL 315 (515)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~ 315 (515)
.+.+.++.+++++ +.......... ...........+.|.+. ++.|.+..+.+.......+...++.++.++++||+
T Consensus 206 ~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~ 282 (394)
T TIGR00883 206 KRGPIRETLTKHR--KPFLLGLGLVI-ATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRI 282 (394)
T ss_pred ccCCHHHHHHhch--HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1223444555332 12222222222 22223455667778777 44688777788888888899999999999999999
Q ss_pred CCchhHHHhhHHHHHHH-HHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHH-HHH
Q psy15227 316 GRKPLSCFSAALGCLLT-FSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCA-SVA 393 (515)
Q Consensus 316 grr~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~-~~~ 393 (515)
|||+.+.....+..+.. ..+..... ..+.+.......+.+++.....+...++..|.+|++.|+++.++. +..
T Consensus 283 g~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 357 (394)
T TIGR00883 283 GRRPVLIIFTVLAALLAVPLLMALLD-----SGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLA 357 (394)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhc-----CCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhH
Confidence 99997765544433322 12111111 223344444455556555566677789999999999999999985 455
Q ss_pred HHHHHHHHHHHHHHHHhhhc-hhHHHHHHHH
Q psy15227 394 LAFGSFITTKFHILITKSLG-QHVIFFIYSS 423 (515)
Q Consensus 394 ~~lg~~~~~~~~g~l~~~~g-~~~~~~~~~~ 423 (515)
..+|..++|.+.|.+.|+.| ++..++....
T Consensus 358 ~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~ 388 (394)
T TIGR00883 358 GAIFGGFAPYIAAALVAMTGDWYAIGYYLAA 388 (394)
T ss_pred HHHHhhHHHHHHHHHHHHcCcchhHHHHHHH
Confidence 67888899999999999988 6544444443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.3e-29 Score=242.51 Aligned_cols=373 Identities=12% Similarity=0.044 Sum_probs=259.1
Q ss_pred HHHHHHHHHHHHhhhhhccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHHHH
Q psy15227 12 IIATNTASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLL 91 (515)
Q Consensus 12 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~~ 91 (515)
+..+.+..++.+..-..-...+++.+.+.++ +++ +|++|.+++.+++.+++.++.++.|+++||+|.|+++.+
T Consensus 33 ~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~--~~~-----ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~ 105 (462)
T PRK15034 33 RRNLWISVSCLLLAFCVWMLFSAVTVNLNKI--GFN-----FTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVF 105 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hcC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHH
Confidence 3445555555555555666677777766542 588 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhh------hhhHHHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhhhHHHHHHHHHhh
Q psy15227 92 NALLCLPTWFLVVSN------KIECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGN 165 (515)
Q Consensus 92 ~~~l~~i~~~~~~~~------~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~ 165 (515)
+.++.++.+++.+++ +++.+++.|++.|++ +..++.....+++|+|+++||+++++.....++|..+++.+..
T Consensus 106 ~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p 184 (462)
T PRK15034 106 STAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAP 184 (462)
T ss_pred HHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999999998863 899999999999998 7788999999999999999999999996555566554433331
Q ss_pred ----------------------HHHhHHHHHhhhHHHHHHHHHhhc-ccCcchhhhhcCChhHHHHHHHhhcCCCcChHH
Q psy15227 166 ----------------------HVSYNSLNIALSILPVIFFILFSF-VPETPHFHAAKNNLKKTEKSLKWYRGNKKDVME 222 (515)
Q Consensus 166 ----------------------~l~wr~~f~i~~~~~~~~~~~~~~-~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (515)
..+||...++..++.++..++.++ .++.|.
T Consensus 185 ~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~--------------------------- 237 (462)
T PRK15034 185 LVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS--------------------------- 237 (462)
T ss_pred HHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc---------------------------
Confidence 224888888887777766666554 333221
Q ss_pred HHHHHHHHhhhhhhchhhhhhhhccccchhHHHHHHHHHHHHHhhchHHHHHHHHhhhcccCCCCCCcchhHHHHHHHHH
Q psy15227 223 EMNSIMDKTQEDLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMF 302 (515)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 302 (515)
++.+.....+.+|+|+.|.. .+..++.+.++..+..+.|++.++ .++.........+..+...
T Consensus 238 -----------~~~~~~~~~~vlk~~~~Wll-----slly~~tFG~fvg~s~~lp~~~~~-~~~~~~~l~~~~l~~l~~~ 300 (462)
T PRK15034 238 -----------SRASIADQLPVLQRLHLWLL-----SLLYLATFGSFIGFSAGFAMLAKT-QFPDVNILRLAFFGPFIGA 300 (462)
T ss_pred -----------cccCHHHHHHHhCCCchhHH-----HHHHHHHHHHHHHHHHHHHHHHHH-HcChHHHHHHHHHHHHHHH
Confidence 01112234567777665542 222233344456677788887765 3332233333444567788
Q ss_pred HHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccc--
Q psy15227 303 LSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPI-- 380 (515)
Q Consensus 303 ~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~-- 380 (515)
+.++++|+++||+|+++++.++.+.+.++...+..... .+...+.+...+..+......+......+-++.+.+|+
T Consensus 301 l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp--~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~ 378 (462)
T PRK15034 301 IARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLP--GTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQIT 378 (462)
T ss_pred HHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhc--cccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhh
Confidence 89999999999999999998888777666544333221 11111222222222222222233334445667777774
Q ss_pred -------------------hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc-hhHHHHHHHHHHHHHHHHHHHHhhc
Q psy15227 381 -------------------NVRCQASSCASVALAFGSFITTKFHILITKSLG-QHVIFFIYSSVHFCSVVFNYFYLME 438 (515)
Q Consensus 381 -------------------~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (515)
++-|.+.|+....+.+|+++.|.+.|...+..| +...++.+.+..+++.++.+..+.+
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y~r 456 (462)
T PRK15034 379 IYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVYGR 456 (462)
T ss_pred hhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 146788999999999999999999999988876 5567888888888888887666543
|
|
| >KOG2533|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=250.54 Aligned_cols=373 Identities=15% Similarity=0.093 Sum_probs=256.6
Q ss_pred HHHHHHHHHhhhhhccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHHHHHHH
Q psy15227 15 TNTASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNAL 94 (515)
Q Consensus 15 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~~~~~ 94 (515)
+..++...+....+...+ ..+.+....+|.+ ....+.+.+.++++++++++.+++|.+.||++-.+.+....+
T Consensus 47 ~~~~~~~y~~~~~d~~si--~~a~l~g~~edl~-----~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~ 119 (495)
T KOG2533|consen 47 LPFLCYLYFHAYLDKSSI--VNASLSGLKEDLK-----LVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGI 119 (495)
T ss_pred HHHHHHHHHHHhcchhcc--hhHHHcCCccccc-----hhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHH
Confidence 333444444444443332 3334444556888 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh-hhhHHHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhhhHHHHHHHHHhhHH------
Q psy15227 95 LCLPTWFLVVSN-KIECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHV------ 167 (515)
Q Consensus 95 l~~i~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~l------ 167 (515)
++++..++.+.. |++.+++.|++.|+.++..+|....+++.|+.++||++.++++.+..++|.++|++++..+
T Consensus 120 ~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~ 199 (495)
T KOG2533|consen 120 LWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGS 199 (495)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCC
Confidence 999999888889 9999999999999999999999999999999999999999999999999999999998772
Q ss_pred ----HhHHHHHhhhHHHHHHHHHhh-cccCcch--hhhhcCChhHHHHHHHhhcCCCcChHHHHHHHHHHhhhhhhchhh
Q psy15227 168 ----SYNSLNIALSILPVIFFILFS-FVPETPH--FHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTG 240 (515)
Q Consensus 168 ----~wr~~f~i~~~~~~~~~~~~~-~~pesp~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (515)
||||.|++.++++++..+..+ ++|+.|. |..++++++-..+..++.. ....+++.++..
T Consensus 200 ~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~~~~~~~~~~--------------~~~~~~~~~~~~ 265 (495)
T KOG2533|consen 200 GGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEKELVVERLRESP--------------SGGIENKFKWKG 265 (495)
T ss_pred CCcCCceeehhHHHHHHHHHHheEEEEecCChhhccccchHHHHHHHHHHHhcc--------------CCCcccccCHHH
Confidence 899999999999988877665 5899886 3322222111111111100 000111134556
Q ss_pred hhhhhccccchhHHHHHHHHHHHHHhhchHHHHHHHHhhhcc-cCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhh----
Q psy15227 241 YLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPK-LDNAYFGPDQCILVFMIIMFLSNFLQAPLMDIL---- 315 (515)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~---- 315 (515)
+++.++++..|. +.+..++.....+.+.+|+|.++++ .|++..++..+..+..++++++.+++|+++||.
T Consensus 266 ~~~a~~dp~vw~-----~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~ 340 (495)
T KOG2533|consen 266 FKEALKDPGVWP-----FSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIF 340 (495)
T ss_pred HHHHHhchhHHH-----HHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhH
Confidence 777888765443 3333344444567889999999988 468888999999999999999999999999994
Q ss_pred CCchhHHHhhHHHHHHH-HHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchhh-hhhhhHHHHH
Q psy15227 316 GRKPLSCFSAALGCLLT-FSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVR-CQASSCASVA 393 (515)
Q Consensus 316 grr~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r-~~~~g~~~~~ 393 (515)
.+|........+..... ..+.. ................+.....+....+.++....+.| -+..+.....
T Consensus 341 ~~~~~~~~~~~~~~~~g~~~l~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~ 412 (495)
T KOG2533|consen 341 ARRLLFIVFLCLYAIIGAISLLA--------AAVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDG 412 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh--------hccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcc
Confidence 44444444333333322 22222 22222222222222222344455556677766655544 4444555555
Q ss_pred HHHHHHHHHHHHHH-HHhhhchhHHHHHH
Q psy15227 394 LAFGSFITTKFHIL-ITKSLGQHVIFFIY 421 (515)
Q Consensus 394 ~~lg~~~~~~~~g~-l~~~~g~~~~~~~~ 421 (515)
.+.++.++|.+.-. ....+++...+...
T Consensus 413 ~~s~~~~~~~~~~~~~ap~y~~~~~f~~~ 441 (495)
T KOG2533|consen 413 TGSAGAISGQLFRSLDAPRYGWGAVFYML 441 (495)
T ss_pred hhHHHHhhhhhcccccCcchhhhhHHHHH
Confidence 66666666655433 33445666666333
|
|
| >KOG2532|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=249.53 Aligned_cols=351 Identities=17% Similarity=0.224 Sum_probs=265.8
Q ss_pred cchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHhhhhhhhcccch
Q psy15227 53 LNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALLCLPTWFLVVSN---KIECLYIARLFIGISKGVAYTAM 129 (515)
Q Consensus 53 ~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~---~~~~l~~~r~l~G~~~g~~~~~~ 129 (515)
+|..|.+++.+.++.|+++++++.|+++||+|.|+++..+.++.++++++...+ +++.+++.|++||++.|..+|+.
T Consensus 70 ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~pa~ 149 (466)
T KOG2532|consen 70 WSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLFPAI 149 (466)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHHhhh
Confidence 999999999999999999999999999999999999999999999999999998 77788999999999999999999
Q ss_pred hhhhhcccccccccccccccchhhhHHHHHHHHHhhHH-----HhHHHHHhhhHHHHHHHHHhhc-ccCcchhhhhcCCh
Q psy15227 130 PIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHV-----SYNSLNIALSILPVIFFILFSF-VPETPHFHAAKNNL 203 (515)
Q Consensus 130 ~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~l-----~wr~~f~i~~~~~~~~~~~~~~-~pesp~~~~~~~~~ 203 (515)
..+.++|.|++||++..++...+..+|.+++..+++.+ ||+++|++.++.+++..+++++ ..|+|.....-
T Consensus 150 ~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h~~i--- 226 (466)
T KOG2532|consen 150 GSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKHPNI--- 226 (466)
T ss_pred hceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcccCCCC---
Confidence 99999999999999999999999999998887777665 8999999999999988877764 56776531111
Q ss_pred hHHHHHHHhhcCCCcChHHHHHHHHHHhhh---hhhchhhhhhhhccccchhHHHHHHHHHHHHHhhchHHHHHHHHhhh
Q psy15227 204 KKTEKSLKWYRGNKKDVMEEMNSIMDKTQE---DLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLL 280 (515)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (515)
.++|.+..++...+ +++.+.+++++++++..| .+.+..+....+...+..|.|.|+
T Consensus 227 ----------------s~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~vw-----ai~~~~f~~~~~~~~l~~y~PtY~ 285 (466)
T KOG2532|consen 227 ----------------SEKELKYIEKGKSEAHVKKKPPVPYKAILTSPPVW-----AIWISAFGGNWGFYLLLTYLPTYL 285 (466)
T ss_pred ----------------CHHHHHHHHhcccccccCCCCCCCHHHHHcCHHHH-----HHHHHHHHHHHHHHHHHHHhhHHH
Confidence 11122222222111 112467899999976443 344445555556788999999999
Q ss_pred cc-cCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCc---------hhHHHhhHHHHHHHHHHHHHHHhhCCCCCCcc
Q psy15227 281 PK-LDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRK---------PLSCFSAALGCLLTFSTGLFYLYQGELPNFQY 350 (515)
Q Consensus 281 ~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (515)
++ ++++..+.+...++..+...+..+++|.++||..+| ..-.++....+++++.+++.. ..+.+
T Consensus 286 ~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~------~~~~~ 359 (466)
T KOG2532|consen 286 KEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTS------DEHRL 359 (466)
T ss_pred HHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecC------CCcch
Confidence 88 599999999999999999999999999999998663 122334444444444444310 11222
Q ss_pred HHHHHHHHHHHHHhcccchh-hhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHh---hhchhHHHHHHHHHHH
Q psy15227 351 IPYITTLLYAASYYGIGCLP-NILVSELFPINVRCQASSCASVALAFGSFITTKFHILITK---SLGQHVIFFIYSSVHF 426 (515)
Q Consensus 351 ~~~~~~~l~~~~~~~~~~~~-~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~---~~g~~~~~~~~~~~~~ 426 (515)
..++ .+....+..+..... +.-..+. .+++.+..+|+.+....+.++++|.+.|.+.. ...|+..|++.+++.+
T Consensus 360 ~a~~-~l~~~~~~~g~~~~Gf~~~~~~~-apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~ 437 (466)
T KOG2532|consen 360 LAVI-LLTIAIGLSGFNISGFYKNHQDI-APQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILI 437 (466)
T ss_pred HHHH-HHHHHHHHcccchhhhHhhhhhc-cchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHH
Confidence 2322 223333333333322 2222332 45778999999999999999999999999983 3578899999999999
Q ss_pred HHHHHHHHH
Q psy15227 427 CSVVFNYFY 435 (515)
Q Consensus 427 ~~~~~~~~~ 435 (515)
++.++..++
T Consensus 438 ~~~i~f~~f 446 (466)
T KOG2532|consen 438 VGNIIFLFF 446 (466)
T ss_pred HhchheeEe
Confidence 888665333
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-30 Score=251.32 Aligned_cols=341 Identities=21% Similarity=0.232 Sum_probs=255.1
Q ss_pred HHHHHhhhhhccchhhhhh-cccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHHHHHHHHHH
Q psy15227 19 SISLLIAGCWIAWPSVMIK-RLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALLCL 97 (515)
Q Consensus 19 ~l~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~~~~~l~~ 97 (515)
+++.+...++.....+.+| .+.+ ++| .+..+.+++.+++.++..+++++.|+++||+|||+++..+.++.+
T Consensus 2 ~l~~~~~~~~~~~~~~~~~~~~~~---~~~-----~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~ 73 (352)
T PF07690_consen 2 FLAFFLSGFGFSIISPALPLYLAE---ELG-----LSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFA 73 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHC---CST-----TTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH---ccC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhh
Confidence 3456667777778888888 6655 588 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhh-hhhHHHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhhhHHHHHHHHHhhHH----HhHHH
Q psy15227 98 PTWFLVVSN-KIECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHV----SYNSL 172 (515)
Q Consensus 98 i~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~l----~wr~~ 172 (515)
++.++..++ +++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+.++|..+++.+++.+ +||+.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~ 153 (352)
T PF07690_consen 74 LGSLLLAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWA 153 (352)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCH
T ss_pred hHHHHhhhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccc
Confidence 997777787 8889999999999999999999999999999999999999999999999999999998776 89999
Q ss_pred HHhhhHHHHHHHHHh-hcccCcchhhhhcCChhHHHHHHHhhcCCCcChHHHHHHHHHHhhhhhhchh-hhhhhhccccc
Q psy15227 173 NIALSILPVIFFILF-SFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKT-GYLELLTNKSN 250 (515)
Q Consensus 173 f~i~~~~~~~~~~~~-~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 250 (515)
|++.+++.++..++. .+++++|+....+++.++. ++++++.. .++.+.+++..
T Consensus 154 ~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~ 208 (352)
T PF07690_consen 154 FLISAILSLIAAILFILFLPEPPPPRERESPKESE-------------------------SKKPKPLKPGFKSLFKNPVL 208 (352)
T ss_dssp HHHHHHHHHHHHHHHHCCC---STTTT--SSTTTT---------------------------HHHCCCH-CTHHHHHHCC
T ss_pred cccccchhhhhhhhHhhhhhhcccccccccccccc-------------------------cccccccccccccccccchh
Confidence 999999998877643 3455544321111111100 00011111 24455555444
Q ss_pred hhHHHHHHHHHHHHHhhchHHHHHHHHhh-hcccCCC-CCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHH
Q psy15227 251 RRAFTLVMAASLFQRLGGITSMITYSSTL-LPKLDNA-YFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALG 328 (515)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~ 328 (515)
+ ..+....... ........+.|.+ .+..|.+ ..+.+.......+..+++.++.+++.||+++|+.........
T Consensus 209 ~-~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 283 (352)
T PF07690_consen 209 W-ILLIAFFLFF----FVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLL 283 (352)
T ss_dssp H-HHHHHHHHHH----HHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred h-hhhhhhhHHH----HHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 3 1222222221 1234577778887 4556777 567777788888999999999999999999988777666666
Q ss_pred HHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHH
Q psy15227 329 CLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITT 402 (515)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~ 402 (515)
.+....+..... .++....+....+.+++.+...+...++..|.+|+++||++.|+.+...+++..++|
T Consensus 284 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 284 ILGALGLLLLPF-----SSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHCCSHH-----HCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 655555444222 122344455666677766777888889999999999999999999999999999987
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.7e-29 Score=245.59 Aligned_cols=355 Identities=10% Similarity=0.044 Sum_probs=249.5
Q ss_pred HHhhhhhccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHHHHHHHHHHHHHH
Q psy15227 22 LLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALLCLPTWF 101 (515)
Q Consensus 22 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~ 101 (515)
.++.........+.+|.... ++++ .|..++|++.+.+.++..+.++++|+++||+|||+++..+.++..++.+
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~--~~~g-----~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~ 91 (400)
T PRK11646 19 NMLVVLGFFVVFPLISIRFV--DQLG-----WAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFA 91 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHhC-----CcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHH
Confidence 33344444455555554322 1477 9999999999999999999999999999999999999999999999999
Q ss_pred HHHhh-hhhHHHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhhhHHHHHHHHHhhHH---HhHHHHHhhh
Q psy15227 102 LVVSN-KIECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHV---SYNSLNIALS 177 (515)
Q Consensus 102 ~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~l---~wr~~f~i~~ 177 (515)
++.+. +++.+++.|+++|++.+...+...+++.|++|+++|++++++.+....+|..++|.+++.+ +||+.|++.+
T Consensus 92 ~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~~g~~~~f~~~~ 171 (400)
T PRK11646 92 TMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQYDFRLVCATGA 171 (400)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999 9999999999999999988899999999999999999999999999999999998888766 9999999988
Q ss_pred HHHHHHHHHh-hcccCcchhhhhcCChhHHHHHHHhhcCCCcChHHHHHHHHHHhhhhhhchhhhhhhhccccchhHHHH
Q psy15227 178 ILPVIFFILF-SFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGYLELLTNKSNRRAFTL 256 (515)
Q Consensus 178 ~~~~~~~~~~-~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (515)
+..++..+.. ++.||.+. ++. + ++.+.++++.++++..+.....
T Consensus 172 ~~~~~~~i~~~~~~~~~~~-----~~~-----------------~-------------~~~~~~~~~~~~~~~~~~~~~~ 216 (400)
T PRK11646 172 VLFVLAAAFNAWLLPAYKL-----STV-----------------R-------------TPVREGMTRVLRDKRFVTYVLT 216 (400)
T ss_pred HHHHHHHHHHHHhCCcccc-----ccc-----------------c-------------hhhHHHHHHHHcCchHHHHHHH
Confidence 7776655443 34555210 000 0 0001234455665543321111
Q ss_pred HHHHHHHHHhhchHHHHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHh-hhCCchhHHHhhHHHHHHHHHH
Q psy15227 257 VMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMD-ILGRKPLSCFSAALGCLLTFST 335 (515)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~grr~~~~~~~~~~~~~~~~~ 335 (515)
. .... ........+.|.+.++.+.++.+.+.......+....+....+++.| |.+.++.+..+..+.+++..++
T Consensus 217 ~-~~~~----~~~~~~~~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l 291 (400)
T PRK11646 217 L-TGYY----MLAVQVMLMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPI 291 (400)
T ss_pred H-HHHH----HHHHHHHHhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH
Confidence 1 1111 11122345678877776556566666666666666655555566555 4565666666666666665554
Q ss_pred HHHHHhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc--
Q psy15227 336 GLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLG-- 413 (515)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~g-- 413 (515)
.. .++.+...+...+++.+.....|...++..|..|++.||++.|+.+....+|..++|.+.|.+.|+.+
T Consensus 292 ~~--------~~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~ 363 (400)
T PRK11646 292 GM--------VSNLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKAL 363 (400)
T ss_pred HH--------hhhHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhc
Confidence 43 23334444444555555555567777889999999999999999999999999999999999998753
Q ss_pred --hhHHHHHHHHHHHHHHHH
Q psy15227 414 --QHVIFFIYSSVHFCSVVF 431 (515)
Q Consensus 414 --~~~~~~~~~~~~~~~~~~ 431 (515)
....+...+.+.+++.+.
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~ 383 (400)
T PRK11646 364 NQPELPWMMLGIIGLITLLA 383 (400)
T ss_pred CCcchHHHHHHHHHHHHHHH
Confidence 234555545555544433
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.3e-29 Score=246.45 Aligned_cols=339 Identities=13% Similarity=0.056 Sum_probs=245.2
Q ss_pred hhhhccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q psy15227 25 AGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALLCLPTWFLVV 104 (515)
Q Consensus 25 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~~ 104 (515)
..+..+...|.+|.+.+ +++ .++++.+++.+++.++..++++++|+++||+|||+++..+.++..++.+++.
T Consensus 18 ~~~~~~~~~p~~~~i~~---~~~-----~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~ 89 (401)
T PRK11043 18 GFLATDMYLPAFKAIQA---DLQ-----TSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGML 89 (401)
T ss_pred HHHHHHHHHhhHHHHHH---HHC-----CCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHH
Confidence 33455566677776655 588 9999999999999999999999999999999999999999999999999999
Q ss_pred hh-hhhHHHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhhhHHHHHHHHHhhHH----HhHHHHHhhhHH
Q psy15227 105 SN-KIECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHV----SYNSLNIALSIL 179 (515)
Q Consensus 105 ~~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~l----~wr~~f~i~~~~ 179 (515)
++ +++.+++.|+++|++.+...+...+++.|+++++++++..+.......+|..++|.+++.+ +||+.|++.+++
T Consensus 90 ~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~ 169 (401)
T PRK11043 90 WVESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAI 169 (401)
T ss_pred HhcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 99 9999999999999998888888888999999999898888887777777777777776554 999999998888
Q ss_pred HHHHHHHhhcccCcchhhhhcCChhHHHHHHHhhcCCCcChHHHHHHHHHHhhhhhhchhhhhhhhccccchhHHHHHHH
Q psy15227 180 PVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGYLELLTNKSNRRAFTLVMA 259 (515)
Q Consensus 180 ~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (515)
.++..+..++++|+++. ++ +++++.++++.++++..+...+....
T Consensus 170 ~~~~~~~~~~~~~~~~~----~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (401)
T PRK11043 170 TLLLILPTLRLKPSKKA----RK-------------------------------QSQDALTFKQLLKSKTYLGNVLIFAA 214 (401)
T ss_pred HHHHHHHHHHcCCCCCc----cc-------------------------------cchHHHHHHHHHcChhHHHHHHHHHH
Confidence 87766665555554310 00 00011234555665544332221111
Q ss_pred HHHHHHhhchHHHHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHH
Q psy15227 260 ASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFY 339 (515)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~ 339 (515)
. .........+.|.+.++.|.+..+.+.......++.+++.++.+++.||+++|+.........+++...+....
T Consensus 215 ~-----~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (401)
T PRK11043 215 C-----SAAFFAWLTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLAS 289 (401)
T ss_pred H-----HHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 11223455667878877888877777777777788899999999999999998876555555444443332221
Q ss_pred HhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhchh
Q psy15227 340 LYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQH 415 (515)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~ 415 (515)
... .+..+.......+.+.+.+...+.......|..| +.++++.|+.+.....++..++.+.|.+.+.....
T Consensus 290 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~ 361 (401)
T PRK11043 290 LLS---HPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALISTPLLT 361 (401)
T ss_pred Hhc---cCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCCChhH
Confidence 110 2223333344445555556666776667667766 57999999999999999999999999988754333
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.7e-29 Score=246.91 Aligned_cols=362 Identities=14% Similarity=0.108 Sum_probs=259.8
Q ss_pred HHHHHHHHHHHHHhhhhhccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHHH
Q psy15227 11 QIIATNTASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLL 90 (515)
Q Consensus 11 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~ 90 (515)
.+..+....+..+..+++....++.+|.+.+ +++ +|+.+.|++.+.+.+++.+++++.|+++||+|||+++.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~---~~~-----~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~ 95 (438)
T PRK10133 24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQ---AFT-----LTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGII 95 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHH
Confidence 4455566666778888888999999998855 688 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH---Hhh-hhhHHHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhhhHHHHHHHHHhhH
Q psy15227 91 LNALLCLPTWFLV---VSN-KIECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNH 166 (515)
Q Consensus 91 ~~~~l~~i~~~~~---~~~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~ 166 (515)
.+..++.++++++ .++ +++.++++|+++|+|.|...+....++.|+.++++|.+.+++.+..+.+|..+++.++..
T Consensus 96 ~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~ 175 (438)
T PRK10133 96 TGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQS 175 (438)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999886 456 999999999999999999999999999998877777778889999999998888876531
Q ss_pred ------------------------------HHhHHHHHhhhHHH-HHHHHHhh-cccCcchhhhhcCChhHHHHHHHhhc
Q psy15227 167 ------------------------------VSYNSLNIALSILP-VIFFILFS-FVPETPHFHAAKNNLKKTEKSLKWYR 214 (515)
Q Consensus 167 ------------------------------l~wr~~f~i~~~~~-~~~~~~~~-~~pesp~~~~~~~~~~~~~~~~~~~~ 214 (515)
.+||++|+....+. ++..+..+ ..||.+. + +.+
T Consensus 176 l~~~~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~----~-~~~---------- 240 (438)
T PRK10133 176 LILSNVPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS----D-NHS---------- 240 (438)
T ss_pred HHhcCCcccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc----c-ccc----------
Confidence 25666675433333 23222222 2454211 0 000
Q ss_pred CCCcChHHHHHHHHHHhhhhhhchhhhhhhhccccchhHHHHHHHHHHHHHhhchHHHHHHHHhh-hc-ccCCCCCCcch
Q psy15227 215 GNKKDVMEEMNSIMDKTQEDLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTL-LP-KLDNAYFGPDQ 292 (515)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~g~~~~~~~~ 292 (515)
.+++.....+.++++++|.++...+.. ++.. ........|.+.+ .+ ..|.++.+.+.
T Consensus 241 ----------------~~~~~~~~~~~~~ll~~~~~~~~~l~~-~~~~----~~~~~~~~~~~~~l~~~~~g~s~~~ag~ 299 (438)
T PRK10133 241 ----------------DAKQGSFSASLSRLARIRHWRWAVLAQ-FCYV----GAQTACWSYLIRYAVEEIPGMTAGFAAN 299 (438)
T ss_pred ----------------cccccchhhhHHHHHhCchHHHHHHHH-HHHH----HHHHHHHHHHHHHHhhhcCCCCHHHHHH
Confidence 000000112344666765544322222 1111 2223344455655 34 46888888999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhcccchhhh
Q psy15227 293 CILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNI 372 (515)
Q Consensus 293 ~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 372 (515)
......++.++|+++.+++.||+++|+++..+..+..+.+++..+ .... .......+.+++.+...|..++
T Consensus 300 ~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~--------~~~~-~~~~~~~l~glg~~~i~P~~~s 370 (438)
T PRK10133 300 YLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAF--------AGGH-VGLIALTLCSAFMSIQYPTIFS 370 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH--------cCCh-HHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999888776666555444333 1222 2344566677777888899999
Q ss_pred hhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc-hhHHHHHHHHHHHH
Q psy15227 373 LVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLG-QHVIFFIYSSVHFC 427 (515)
Q Consensus 373 ~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~ 427 (515)
...|..|++ .+++.++.. ...+|+.++|.+.|.+.|..| .+..+++.....+.
T Consensus 371 ~a~~~~~~~-~~~as~l~~-~~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~ 424 (438)
T PRK10133 371 LGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAV 424 (438)
T ss_pred HHHcccchh-hccchhHHh-HHhccchHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 999987754 678888776 455789999999999999887 56666654444333
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.9e-29 Score=243.80 Aligned_cols=366 Identities=11% Similarity=0.030 Sum_probs=248.1
Q ss_pred HHHHHhhhhhccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHHHHHHHHHHH
Q psy15227 19 SISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALLCLP 98 (515)
Q Consensus 19 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~~~~~l~~i 98 (515)
.++.++..+.........+.+.. +++ .++.+.+++.+.+.+++.++++++|+++||+|||++++++.++..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~---~~~-----~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~ 80 (393)
T PRK11195 9 MAAQFFSALADNALLFAAIALLK---ELH-----YPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLL 80 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HcC-----CcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHH
Confidence 34444444433333333333333 477 8888999999999999999999999999999999999999999999
Q ss_pred HHHHHHhh-hhhHHHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhhhHHHHHHHHHhhHH---HhHHHHH
Q psy15227 99 TWFLVVSN-KIECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHV---SYNSLNI 174 (515)
Q Consensus 99 ~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~l---~wr~~f~ 174 (515)
+++++.++ +. ++.|+++|++.+...|+..+++.|++|+++|++++++.+....+|.++||.+++.+ .|+..+.
T Consensus 81 ~~~~~~~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~~~~~~~ 157 (393)
T PRK11195 81 GCLLMLFGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPHAEAALA 157 (393)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888777 64 77899999999999999999999999999999999999999999999999998876 4555565
Q ss_pred hhhHHHHHHHHHhhcccCcchhhhhcCChhHHHHHHHhhcCCCcChHHHHHHHHHHhhhhhhchhhhhhhhccccchhHH
Q psy15227 175 ALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGYLELLTNKSNRRAF 254 (515)
Q Consensus 175 i~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (515)
+.+...++..+....+||+|+.... ++++. .....+. ....+.+++++..+...
T Consensus 158 i~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~--------------~~~~~~~----------~~~~~~l~~~~~~~~~~ 211 (393)
T PRK11195 158 VCALIYLLAALFNLFIPRLGARRPG--QSWNP--------------IALLRDF----------FHACRVLWRDKLGRFSL 211 (393)
T ss_pred HHHHHHHHHHHHHhcCCCCcccccc--cCCCH--------------HHHHHHH----------HHHHHHHHhCchhHHHH
Confidence 5554444444444567886532110 00000 0000000 01123556655443322
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHhhhcc-cCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHH
Q psy15227 255 TLVMAASLFQRLGGITSMITYSSTLLPK-LDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTF 333 (515)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~ 333 (515)
......... .....+..+.+.++ .|.++.+.+.......++.+++++..+++.||.++++.+..+.. .++...
T Consensus 212 ~~~~~~~~~-----~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~ 285 (393)
T PRK11195 212 AGTTLFWGA-----GATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVL 285 (393)
T ss_pred HHHHHHHHH-----HHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHH
Confidence 222221111 12222333333333 57787888999999999999999999999999988887766643 333322
Q ss_pred HHHHHHHhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchh-hhhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q psy15227 334 STGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINV-RCQASSCASVALAFGSFITTKFHILITKSL 412 (515)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~-r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~ 412 (515)
.+.. .++.+.......+.+++.....+...+...+..|++. +|++.++.+...+++..++..+.+.+ +..
T Consensus 286 ~~~~--------~~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~ 356 (393)
T PRK11195 286 LMAL--------QHSLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKL 356 (393)
T ss_pred HHHH--------HhHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHc
Confidence 2222 2233434444555666554444555677778755554 79999999999999999999998855 678
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHh
Q psy15227 413 GQHVIFFIYSSVHFCSVVFNYFYL 436 (515)
Q Consensus 413 g~~~~~~~~~~~~~~~~~~~~~~~ 436 (515)
|.+..+.+.+...+++..+.+.+.
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~ 380 (393)
T PRK11195 357 GVPVVAVIVGFGLLVALAMALLWR 380 (393)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 887777776666666655554443
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-28 Score=228.88 Aligned_cols=376 Identities=14% Similarity=0.093 Sum_probs=278.6
Q ss_pred HHHHHHHHHHHHHhhhhhccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHHH
Q psy15227 11 QIIATNTASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLL 90 (515)
Q Consensus 11 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~ 90 (515)
+...+.+..+.....-..-.+.+++.+.+.+ |++ +|+.|.+++.++..+...+..++.|.+.||+|.|++..
T Consensus 12 ~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~---~~~-----LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~ 83 (417)
T COG2223 12 ARRNLWLSTLAFDVGFMVWTLFSPLGVFIKS---DFG-----LSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTI 83 (417)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhcc---ccC-----CCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHH
Confidence 3344444444444444455556777777754 699 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhh----hhhHHHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhhhHHHHHH----HH
Q psy15227 91 LNALLCLPTWFLVVSN----KIECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAI----LL 162 (515)
Q Consensus 91 ~~~~l~~i~~~~~~~~----~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~----~~ 162 (515)
++.++..+-++..+++ +++++++.+.+.|++. ..+.....++++|+||+++|.++|+.. ..++|..+. |.
T Consensus 84 ~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~G-asFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~ 161 (417)
T COG2223 84 LSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAG-ASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPL 161 (417)
T ss_pred HHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhccc-ceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHH
Confidence 9999999999999998 4459999999999985 467888999999999999999999998 777776655 44
Q ss_pred HhhHHH---hHHHHHhhhHHHHHHHHHhhc-ccCcchhhhhcCChhHHHHHHHhhcCCCcChHHHHHHHHHHhhhhhhch
Q psy15227 163 IGNHVS---YNSLNIALSILPVIFFILFSF-VPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSK 238 (515)
Q Consensus 163 l~~~l~---wr~~f~i~~~~~~~~~~~~~~-~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (515)
+....+ ||....+..+..++..+..++ ..+.|......+ +..+
T Consensus 162 v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~---------------------------------~~~~ 208 (417)
T COG2223 162 VAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVK---------------------------------PQLP 208 (417)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhcccc---------------------------------ccch
Confidence 445557 999988888888776666554 555543211000 0000
Q ss_pred hhhhhhhccccchhHHHHHHHHHHHHHhhchHHHHHHHHhhhcc-cCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCC
Q psy15227 239 TGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPK-LDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGR 317 (515)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr 317 (515)
..++.+.++++.|. +.+.++..+.+...+..+.|.++++ .|.+..+++.......+.+.+.++++|+++||+|.
T Consensus 209 ~~~~~v~~~~~~W~-----lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg 283 (417)
T COG2223 209 AQLKAVFSNKDTWL-----LSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGG 283 (417)
T ss_pred hHHHHHhcCcchHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccc
Confidence 23445565554443 3344444555667788888888766 69998899999999999999999999999999999
Q ss_pred chhHHHhhHHHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHH
Q psy15227 318 KPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFG 397 (515)
Q Consensus 318 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg 397 (515)
++.+......++++..++......... ..+........+......+......+-++..++|. +.|.+.|+....+.+|
T Consensus 284 ~rv~~~~f~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-~~G~v~G~vga~G~lG 361 (417)
T COG2223 284 RRVTLAVFVGMALAAALLSLFLTGFGH-GGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK-ETGAVTGIVGAIGGLG 361 (417)
T ss_pred hhHHHHHHHHHHHHHHHHHcccccccc-CcchHHHHHHHHHHHHHhccCcchheeechHHHHh-hhhHHHHHHHHhcccc
Confidence 999888888888888877763211100 01222222222333333344444456778888775 5789999999999999
Q ss_pred HHHHHHHHHHHHhhhc-hhHHHHHHHHHHHHHHHHHHHHh
Q psy15227 398 SFITTKFHILITKSLG-QHVIFFIYSSVHFCSVVFNYFYL 436 (515)
Q Consensus 398 ~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~ 436 (515)
++.-|...|...+.+| +...|+++..+.+++.+..+..+
T Consensus 362 Gf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y 401 (417)
T COG2223 362 GFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALY 401 (417)
T ss_pred ccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999 66788888888888877665544
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-28 Score=241.03 Aligned_cols=364 Identities=14% Similarity=0.027 Sum_probs=250.0
Q ss_pred HHHHHHHHhhhhhccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHHHHHHHH
Q psy15227 16 NTASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALL 95 (515)
Q Consensus 16 ~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~~~~~l 95 (515)
....+..+...+......|.+|.+.+ +++ .+..+.++..+++.+++.++++++|+++||+|||++++.+.++
T Consensus 19 ~~~~~~~~~~~~~~~~~~p~l~~i~~---~~~-----~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~ 90 (413)
T PRK15403 19 MALILYDFAAYLTTDLIQPGIINVVR---DFN-----ADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALI 90 (413)
T ss_pred HHHHHHHHHHHHHHHhhccCHHHHHH---HhC-----CCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHH
Confidence 33445556677788888888888765 588 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh-hhhHHHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhhhHHHHHHHHHhhHH----HhH
Q psy15227 96 CLPTWFLVVSN-KIECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHV----SYN 170 (515)
Q Consensus 96 ~~i~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~l----~wr 170 (515)
++++++++.++ +++.++++|+++|++.+...+....++.|++++++|++++++...+..+|..++|.++..+ +||
T Consensus 91 ~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~ 170 (413)
T PRK15403 91 FTLACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWK 170 (413)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 99999999999 9999999999999999877777788899999999999999999999889888888887654 899
Q ss_pred HHHHhhhHHHHHHHHHh-hcccCcchhhhhcCChhHHHHHHHhhcCCCcChHHHHHHHHHHhhhhhhchhhhhhhhcccc
Q psy15227 171 SLNIALSILPVIFFILF-SFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGYLELLTNKS 249 (515)
Q Consensus 171 ~~f~i~~~~~~~~~~~~-~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (515)
+.|++.++..++..+.. +.+||+++. +++..+ .+....+++++++++.
T Consensus 171 ~~f~~~~~~~~i~~~~~~~~lp~~~~~---~~~~~~----------------------------~~~~~~~~~~ll~~~~ 219 (413)
T PRK15403 171 VLFAIIAVMGLIAFVGLLLAMPETVKR---GAVPFS----------------------------AKSVLRDFRNVFRNRL 219 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCccc---cCCCCC----------------------------hHHHHHHHHHHHcCHH
Confidence 99999998887766554 357886531 000000 0001123456666654
Q ss_pred chhHHHHHHHHHHHHHhhchHHHHHHHHhhhccc-CCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHH
Q psy15227 250 NRRAFTLVMAASLFQRLGGITSMITYSSTLLPKL-DNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALG 328 (515)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~ 328 (515)
.+..... .............+.|.++++. |.++.+.+........+.+++..+.+.+.++..+++.......+.
T Consensus 220 ~~~~~l~-----~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 294 (413)
T PRK15403 220 FLTGAAT-----LSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQ 294 (413)
T ss_pred HHHHHHH-----HHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHH
Confidence 4332111 1122222345556678777664 787777777777777788888787777765544444332222232
Q ss_pred HHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy15227 329 CLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILI 408 (515)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l 408 (515)
.++..++....... .+..+...+...+++.+.+...|......-+. ....+|++.++.+.....+...++...+++
T Consensus 295 ~ig~~l~~~~~~~~---~~~~~~~~~~~~l~~~G~~~~~p~~~~~al~~-~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~ 370 (413)
T PRK15403 295 LVGLALLIVGNLLW---PHVWLWSVLGTSLYAFGIGLIFPTLFRFTLFS-NNLPKGTVSASLNMVILMVMAVSVEIGRWL 370 (413)
T ss_pred HHHHHHHHHHHHHc---cccHHHHHHHHHHHHHHHHHHhHHHHHHHhcc-CCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33332222211000 12222234555566666655555544222121 222479999999999999999999999988
Q ss_pred HhhhchhHHHHHHHHHHHHH
Q psy15227 409 TKSLGQHVIFFIYSSVHFCS 428 (515)
Q Consensus 409 ~~~~g~~~~~~~~~~~~~~~ 428 (515)
.++ +....+...++++.+.
T Consensus 371 ~~~-~~~~~~~~~~~~~~~~ 389 (413)
T PRK15403 371 WFN-GGRLPFHLLAVVAGVI 389 (413)
T ss_pred HHc-CCchHHHHHHHHHHHH
Confidence 775 5555666555554443
|
|
| >KOG1330|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.8e-31 Score=246.88 Aligned_cols=366 Identities=15% Similarity=0.048 Sum_probs=253.1
Q ss_pred chhHHHHHHHHHHHHHHhhhhhccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhh
Q psy15227 7 SYVYQIIATNTASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRK 86 (515)
Q Consensus 7 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr 86 (515)
..+..+..+.+.++...++..|...+..+.+.+.+ .+| ++++..|++.+.+.+.+.+++|++|+++|||.||
T Consensus 27 ~~~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~---~fn-----i~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~ 98 (493)
T KOG1330|consen 27 SMKSPTLTLVILCLVNLMNYADRYTIAGVLKEVQT---YFN-----ISDSELGLLQTVFIVVFMIASPLFGYLADRYNRK 98 (493)
T ss_pred ccccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHH---hcC-----CCchhccchhHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 44556778888999999999999999998887755 689 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhhhHHHHHHHHHhh
Q psy15227 87 TTLLLNALLCLPTWFLVVSN-KIECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGN 165 (515)
Q Consensus 87 ~~l~~~~~l~~i~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~ 165 (515)
+++.+|..++.++.++++++ .||+++++|.+.|+|.+...|+++++++|.+|+.+|++++++++.+..+|..+|...+.
T Consensus 99 ~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs 178 (493)
T KOG1330|consen 99 RVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGS 178 (493)
T ss_pred eEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeee
Confidence 99999999999999999999 99999999999999999999999999999999999999999999999999888877776
Q ss_pred HH-----HhHHHHHhhhHHHHHHHHHhh-cccCcchhhhhcCChhHHHHHHHhhcCCCcChHHHHHHHHHHhhhhhhchh
Q psy15227 166 HV-----SYNSLNIALSILPVIFFILFS-FVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKT 239 (515)
Q Consensus 166 ~l-----~wr~~f~i~~~~~~~~~~~~~-~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (515)
.+ .|||.|++.++++++..++.+ +.+|++|- ..++. .+++. ..+......+
T Consensus 179 ~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rg-----a~~~~-------~~~~~-----------~~~~~ts~~k 235 (493)
T KOG1330|consen 179 VVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERG-----ARDEV-------DGENK-----------MVKPFTSVWK 235 (493)
T ss_pred eeccCccceEEEEEeehHHHHHHHHHHHhhccCcccc-----ccccc-------ccCCc-----------CCCCccchHH
Confidence 54 599999999999998887766 56775431 00100 00000 0000111122
Q ss_pred hhhhhhccccchhHHHHHHHHHHHHHhhchHHHHHHHHhhh----cccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhh
Q psy15227 240 GYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLL----PKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDIL 315 (515)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~ 315 (515)
+.+.+.+++.+....+......+. ...+..+.|.+. +-.|.+..+...+..+...++.+|.+++|.++||+
T Consensus 236 Dl~~l~~~~v~v~~sl~~~a~~fv-----~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~ 310 (493)
T KOG1330|consen 236 DLKVLAKIKVFVLSSLGIIAAQFV-----IGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKL 310 (493)
T ss_pred HHHHHHccCceeeehHHHHHHHHh-----ccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHH
Confidence 333444444433333333322222 233334444332 22355656777788888899999999999999995
Q ss_pred CCc----hhHHHhhHHH----HHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHH-hcccchhhhhhcccccchhhhhh
Q psy15227 316 GRK----PLSCFSAALG----CLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASY-YGIGCLPNILVSELFPINVRCQA 386 (515)
Q Consensus 316 grr----~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~p~~~r~~~ 386 (515)
.|+ ......-... ..+...+..... ......+. .+.+++++... -...+...-+..|++|++.|.++
T Consensus 311 ~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~---~~~~s~~~-~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a 386 (493)
T KOG1330|consen 311 SRIFPNSGTLRASQLSAALGAPLSIPFLFLFPA---FTSSSMIF-GLILFLVGETISWFNWATNNPIFLEVVPPSRRTTA 386 (493)
T ss_pred HHhcccccchhHHHHHHhhhhhHHHHHHHHHHh---hhhHHHHH-HHHHHHHHHHHHhcccccccceeeEecCcccccHH
Confidence 321 1111111111 111111111111 11122222 22233333333 22333344667899999999999
Q ss_pred hhHHHHHH-HHHHHHHHHHHHHHHhhh
Q psy15227 387 SSCASVAL-AFGSFITTKFHILITKSL 412 (515)
Q Consensus 387 ~g~~~~~~-~lg~~~~~~~~g~l~~~~ 412 (515)
.++...+. .+|.+-+|++.|.+.|+.
T Consensus 387 ~a~~~~~~h~fgd~~~p~ivGilsd~l 413 (493)
T KOG1330|consen 387 YALDTVFEHIFGDAASPYIVGILSDKL 413 (493)
T ss_pred HHHHHHHHHHhccCCCcceehhHHHHh
Confidence 99987665 455556666999998864
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.7e-29 Score=244.38 Aligned_cols=361 Identities=12% Similarity=0.038 Sum_probs=255.1
Q ss_pred HHHhhhhhccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHHHHHHHHHHHHH
Q psy15227 21 SLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALLCLPTW 100 (515)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~~~~~l~~i~~ 100 (515)
..++.....+...+.+|...++ ++| ++..++|++.+.+.++..+++++.|+++||+|||++++++.++..++.
T Consensus 15 ~~~~~~~g~~~~~~~l~~~l~~--~~g-----~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~ 87 (395)
T PRK10054 15 SSLLLTIGRGATLPFMTIYLSR--QYS-----LSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGF 87 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HcC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHH
Confidence 3344455555666666544322 578 999999999999999999999999999999999999999999999999
Q ss_pred HHHHhh-hhhHHHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhhhHHHHHHHHHhhHH---HhHHHHHhh
Q psy15227 101 FLVVSN-KIECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHV---SYNSLNIAL 176 (515)
Q Consensus 101 ~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~l---~wr~~f~i~ 176 (515)
++.++. +++.+++.|++.|.+.+...+...++..|..|+++|+++.++.....++|..++|.++..+ +|+..|++.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~~g~~~~f~~~ 167 (395)
T PRK10054 88 IAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVMQSINLPFWLA 167 (395)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHH
Confidence 998889 9999999999999888888888999999999999999999999999999999999988776 899999988
Q ss_pred hHHHHHHHHHhh-cccCcchhhhhcCChhHHHHHHHhhcCCCcChHHHHHHHHHHhhhhhhchhhhhhhhccccchhHHH
Q psy15227 177 SILPVIFFILFS-FVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGYLELLTNKSNRRAFT 255 (515)
Q Consensus 177 ~~~~~~~~~~~~-~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (515)
++..++..+... ++||+++. ++.+ + ++..+.++.++++..+....
T Consensus 168 ~~~~~i~~i~~~~~~~~~~~~----~~~~----------------~--------------~~~~~~~~~~~~~~~~~~~~ 213 (395)
T PRK10054 168 AICSAFPLVFIQIWVQRSEKA----IATE----------------T--------------GSVWSPSVLLQDKALLWFTC 213 (395)
T ss_pred HHHHHHHHHHHHHHHhccccc----cccc----------------h--------------hhhhhhhhhccCceehHHHH
Confidence 877776654443 35553210 0000 0 00011245566655554333
Q ss_pred HHHHHHHHHHhhchHHHHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHH
Q psy15227 256 LVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFST 335 (515)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~ 335 (515)
..++...... ........|.+.. .+.+.+....+.......+.........+++.||.++|+.+..+..+..++...+
T Consensus 214 ~~~l~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~ 291 (395)
T PRK10054 214 SGFLASFVSG-AFASCISQYVMVV-ADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGF 291 (395)
T ss_pred HHHHHHHHHH-HhhhhHHHHHHHh-cccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHH
Confidence 3222222211 0011122222222 2334443344555555556666677888899999999998888877777666555
Q ss_pred HHHHHhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhchh
Q psy15227 336 GLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQH 415 (515)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~ 415 (515)
... .++.+...+...+++.+.....|.....+.+..|++.|+++.+..+ ...+|..++|.+.|.+.|+.|+.
T Consensus 292 ~~~-------~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~ 363 (395)
T PRK10054 292 IFS-------GNSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPW 363 (395)
T ss_pred HHc-------chHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChh
Confidence 431 1233444555666666666666777788999999999999988655 67799999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy15227 416 VIFFIYSSVHFCSVVFN 432 (515)
Q Consensus 416 ~~~~~~~~~~~~~~~~~ 432 (515)
..+++.+....++.++.
T Consensus 364 ~~~~~~~~~~~~~~~~~ 380 (395)
T PRK10054 364 SLFVILALAIVAAWLLM 380 (395)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 77777665555554443
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.6e-29 Score=244.82 Aligned_cols=346 Identities=17% Similarity=0.181 Sum_probs=239.3
Q ss_pred HhhhhhccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHH
Q psy15227 23 LIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALLCLPTWFL 102 (515)
Q Consensus 23 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~ 102 (515)
+..........+.+|.+.+ ++| .++.+.++..+.+.++..+++++.|+++||+|||+.++.+.++..++.++
T Consensus 13 ~~~~~~~~~~~~~lp~~~~---~~~-----~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~ 84 (392)
T PRK10473 13 LLYPAGIDMYLVGLPRIAA---DLN-----ASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLL 84 (392)
T ss_pred HHHHHHHHHHhhhHHHHHH---HhC-----CCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHH
Confidence 3344444455567887765 588 99999999999999999999999999999999999999999999999999
Q ss_pred HHhh-hhhHHHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhhhHHHHHHHHHhhHH----HhHHHHHhhh
Q psy15227 103 VVSN-KIECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHV----SYNSLNIALS 177 (515)
Q Consensus 103 ~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~l----~wr~~f~i~~ 177 (515)
+..+ +++.+++.|+++|++.+...+...+++.|++|+++|+++.++.+....+|..++|.++..+ +||+.|++.+
T Consensus 85 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~ 164 (392)
T PRK10473 85 CSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMA 164 (392)
T ss_pred HHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHH
Confidence 9988 9999999999999999999999999999999999999999999999888888888887654 8999999988
Q ss_pred HHHHHHHHHh-hcccCcchhhhhcCChhHHHHHHHhhcCCCcChHHHHHHHHHHhhhhhhchhhhhhhhccccchhHHHH
Q psy15227 178 ILPVIFFILF-SFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGYLELLTNKSNRRAFTL 256 (515)
Q Consensus 178 ~~~~~~~~~~-~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (515)
+..++..+.. +++||+++.. ++.+ .......++.++++..+.....
T Consensus 165 ~~~~i~~~~~~~~~~~~~~~~---~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~ 211 (392)
T PRK10473 165 AMGILVLLLSLFILKETRPAR---APAA------------------------------SSKPRENSESLLNRFFLSRLVI 211 (392)
T ss_pred HHHHHHHHHHHHHcCCCCCcc---cCCc------------------------------cchHHHHHHHHhCHHHHHHHHH
Confidence 8777665554 4567754210 0000 0000112233444333322222
Q ss_pred HHHHHHHHHhhchHHHHHHHHhhh-cccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHH
Q psy15227 257 VMAASLFQRLGGITSMITYSSTLL-PKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFST 335 (515)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~ 335 (515)
...... .......+.|.++ ++.|.+..+.+......++..+++.++.+++.||+|||+.+..+..+..++...+
T Consensus 212 ~~~~~~-----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~ 286 (392)
T PRK10473 212 TTLSVT-----VILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITL 286 (392)
T ss_pred HHHHHH-----HHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 211111 1122334445544 3458776677778888889999999999999999999999888877777666655
Q ss_pred HHHHHhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhchh
Q psy15227 336 GLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQH 415 (515)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~ 415 (515)
... ...+.......+...+.....+. ....+..|.+.|+ |.......++..+++.+.+.+.+..|+.
T Consensus 287 ~~~--------~~~~~~~~~~~l~~~g~~~~~~~--~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g~~ 353 (392)
T PRK10473 287 ALS--------PSHAVSLFGITLICAGFSVGFGV--AMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVLGIS 353 (392)
T ss_pred HHH--------HHHHHHHHHHHHHHHHHHHHhHH--HHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 542 11222233333333333222222 2334455554443 4455566778888888888888888876
Q ss_pred HHHHHHHHHHHH
Q psy15227 416 VIFFIYSSVHFC 427 (515)
Q Consensus 416 ~~~~~~~~~~~~ 427 (515)
......+.+.+.
T Consensus 354 ~~~~~~~~~~~~ 365 (392)
T PRK10473 354 AWNMLIGILIAC 365 (392)
T ss_pred hhHHHHHHHHHH
Confidence 444444443333
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-28 Score=241.04 Aligned_cols=349 Identities=14% Similarity=0.114 Sum_probs=253.9
Q ss_pred HHHHHHHHHhhhhhccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHHHHHHH
Q psy15227 15 TNTASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNAL 94 (515)
Q Consensus 15 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~~~~~ 94 (515)
...++...+..++..+..++.+|.+++ ++| +++.+.|++.+.+.+++.+++++.|++.||+|||+++..+.+
T Consensus 5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~---~~~-----~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~ 76 (410)
T TIGR00885 5 FALITSLFALWGFANDITNPMVPQFQQ---AFT-----LTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLF 76 (410)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH---HhC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 456667778889999999999998866 588 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh---h-hhhHHHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhhhHHHHHHHHHhhHH---
Q psy15227 95 LCLPTWFLVVS---N-KIECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHV--- 167 (515)
Q Consensus 95 l~~i~~~~~~~---~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~l--- 167 (515)
+++++.+++.. . +++.+++.|++.|+|.|...+...+++.+..|+++|++.+++.+...++|..+++.++..+
T Consensus 77 l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~ 156 (410)
T TIGR00885 77 LYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILS 156 (410)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999988644 3 7999999999999999999999999999999999999999999999999999888776533
Q ss_pred ---------------------------HhHHHHHhhhHHHHHHHHHhhc--ccCcchhhhhcCChhHHHHHHHhhcCCCc
Q psy15227 168 ---------------------------SYNSLNIALSILPVIFFILFSF--VPETPHFHAAKNNLKKTEKSLKWYRGNKK 218 (515)
Q Consensus 168 ---------------------------~wr~~f~i~~~~~~~~~~~~~~--~pesp~~~~~~~~~~~~~~~~~~~~~~~~ 218 (515)
+||++|++.+++.++..+...+ .||.++ ++ +
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~-----~~-~-------------- 216 (410)
T TIGR00885 157 NLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNH-----SD-A-------------- 216 (410)
T ss_pred CCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-----cc-c--------------
Confidence 5999999888877765544433 343210 00 0
Q ss_pred ChHHHHHHHHHHhhhhhhchhhhhhhhccccchhHHHHHHHHHHHHHhhchHHHHHHHHhhhcccCCC--CCCcchhHHH
Q psy15227 219 DVMEEMNSIMDKTQEDLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNA--YFGPDQCILV 296 (515)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~ 296 (515)
++.....+.++++++|..+.. ....+++.. .......+.+.+.++.+.+ ...+......
T Consensus 217 --------------~~~~~~~~~~~~~~~~~~~~~-~l~~f~yvg----~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~ 277 (410)
T TIGR00885 217 --------------KQISFSASLSRLARIRHYREG-VIAQFFYVG----VQIMCWTFIIQYAVRLIPGMTAGFAANYNIG 277 (410)
T ss_pred --------------ccccchhhHHHHHhChhHHHH-HHHHHHHHH----HHHHHHHHHHHHHhhccCCCCHHHHHHHHHH
Confidence 000001123355555544332 222222222 2334456667776654322 2222334555
Q ss_pred HHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhcc
Q psy15227 297 FMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSE 376 (515)
Q Consensus 297 ~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 376 (515)
......+|+++++++.||+++|+.+.+...+..+..++... .+. ........+.+++....+|..++...+
T Consensus 278 ~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~--------~~~-~~~~~~l~~~glf~s~~fp~i~sl~~~ 348 (410)
T TIGR00885 278 AMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIF--------AGG-HVGLYCLTLCSAFMSLMFPTIYGIALK 348 (410)
T ss_pred HHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH--------cCC-hHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55778899999999999999999888877777776666554 222 233455566666666677999999999
Q ss_pred cccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhh------chhHHHHHH
Q psy15227 377 LFPINVRCQASSCASVALAFGSFITTKFHILITKSL------GQHVIFFIY 421 (515)
Q Consensus 377 ~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~------g~~~~~~~~ 421 (515)
..+++.+..+.++... .+|+.+.|++.|.+.|.. +.+..|++.
T Consensus 349 ~~g~~~~~~s~~l~~~--~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~ 397 (410)
T TIGR00885 349 GLGQDTKYGAAGLVMA--IIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILP 397 (410)
T ss_pred hhhhhhhhhHHHHHHH--HhccchHHHHHHHHHHHhcccccCccchHHHHH
Confidence 9887765444444443 399999999999999954 354555543
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.1e-28 Score=239.86 Aligned_cols=370 Identities=13% Similarity=0.044 Sum_probs=233.5
Q ss_pred hhhccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHh
Q psy15227 26 GCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALLCLPTWFLVVS 105 (515)
Q Consensus 26 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~~~ 105 (515)
....+...+.+|....+ ++| +++.+.|++.+.+.++..++++++|+++||+|||++++++..+..++......
T Consensus 23 ~~~~~~~~~~~~~~l~~--~~g-----~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~ 95 (420)
T PRK09528 23 FFIWSSWFSFFPIWLHD--ING-----LSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFI 95 (420)
T ss_pred HHHHHHHHHHHHHHHHH--hcC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHH
Confidence 33334455666544332 477 99999999999999999999999999999999999998876665554432211
Q ss_pred -h--hhhH--HHHHHHHhhhhhhhcccchhhhhhcccc--cccccccccccchhhhHHHHHHHHHhhHH---HhHHHHHh
Q psy15227 106 -N--KIEC--LYIARLFIGISKGVAYTAMPIFIGEISE--HNIRGALGSIPSGFQMVGTLAILLIGNHV---SYNSLNIA 175 (515)
Q Consensus 106 -~--~~~~--l~~~r~l~G~~~g~~~~~~~~~i~e~~~--~~~r~~~~~~~~~~~~lG~~~~~~l~~~l---~wr~~f~i 175 (515)
. .... ......+.++..+.........+.++.+ ++++++.++......++|..+++.+++.+ +|++.|++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~f~~ 175 (420)
T PRK09528 96 YVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIERVSRRSGFEYGRARMWGSLGWALCAFIAGILFNINPQINFWL 175 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHHHHhhccccchhhHHhhhHHHHHHHHHHHHHHhcCchHhHHH
Confidence 1 1111 1112223333333333332233333333 24567788888888888888888888766 89999999
Q ss_pred hhHHHHHHHHHhhcc-cCcchhhhhcCChhHHHHHHHhhcCCCcChHHHHHHHHHHhhhhhhchhhhhhhhccccchhHH
Q psy15227 176 LSILPVIFFILFSFV-PETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGYLELLTNKSNRRAF 254 (515)
Q Consensus 176 ~~~~~~~~~~~~~~~-pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (515)
.++++++..+..++. ||.++....+ + ++ +.++++.+....++.+|+|..+...
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~------------------------~~~~~~~~~~~~~~~l~~~~~~~l~ 229 (420)
T PRK09528 176 GSGSALILLVLLFFAKPDAPSTAKVA-N-AL------------------------GANASAVSLKDALALLKLPKFWFLV 229 (420)
T ss_pred HHHHHHHHHHHHhcccccccchhhhc-c-ch------------------------hcccccccHHHHHHHccCCCeEeeh
Confidence 888887766666554 3322100000 0 00 0000011112344566766655433
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHH
Q psy15227 255 TLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFS 334 (515)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~ 334 (515)
+..+......... ......|...+..+.+.+....+.......+...++.++.|++.||+|+|+.+..+..+.++...+
T Consensus 230 l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l 308 (420)
T PRK09528 230 LYVIGVACFYDVF-DQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIG 308 (420)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHH
Confidence 2222222111110 111222222233333444445667777788888999999999999999999988888877777666
Q ss_pred HHHHHHhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhH-HHHHHHHHHHHHHHHHHHHHhhhc
Q psy15227 335 TGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSC-ASVALAFGSFITTKFHILITKSLG 413 (515)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~-~~~~~~lg~~~~~~~~g~l~~~~g 413 (515)
+.+ .++.+..+....+.+.+.....+....+..|.+|++.+++..+. .++...+|.+++|.+.|++.|..|
T Consensus 309 ~~~--------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G 380 (420)
T PRK09528 309 SGF--------ATGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIG 380 (420)
T ss_pred HHh--------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 654 34445555555555555544445556788888999999988766 577889999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhh
Q psy15227 414 QHVIFFIYSSVHFCSVVFNYFYLM 437 (515)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~ 437 (515)
++..|...+++.++..++.+...+
T Consensus 381 ~~~~f~~~~~~~~i~~~~~~~~~~ 404 (420)
T PRK09528 381 FQGTYLILGGIVLLFTLISVFTLS 404 (420)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999888887777666544444
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.6e-28 Score=243.16 Aligned_cols=377 Identities=11% Similarity=0.042 Sum_probs=257.5
Q ss_pred hHHHHHHHHHHHHHHhhhhhccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhh-----
Q psy15227 9 VYQIIATNTASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKI----- 83 (515)
Q Consensus 9 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~----- 83 (515)
+.++.-.....+..+..+......++.+|...++ .| .+..+++.+ +.....+ ++.+++|+++||+
T Consensus 8 ~~~~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~---~g-----~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~ 77 (491)
T PRK11010 8 IFQQPNSAILLILGFASGLPLALTSGTLQAWMTV---EN-----IDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFL 77 (491)
T ss_pred HHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CC-----CCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCC
Confidence 3333334444555566777777888888877553 56 888899886 4444444 6889999999999
Q ss_pred hhhHH-HHHHHHHHHHHHHHHHhh----hhhHHHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhhhHHHH
Q psy15227 84 GRKTT-LLLNALLCLPTWFLVVSN----KIECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTL 158 (515)
Q Consensus 84 Grr~~-l~~~~~l~~i~~~~~~~~----~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ 158 (515)
|||+. ++.+.++.+++...+++. +++.+.+.|++.|++.+...+...+++.|++|+++|+++.++...+..+|.+
T Consensus 78 Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~l 157 (491)
T PRK11010 78 GRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAML 157 (491)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHH
Confidence 99885 667777777777777664 6888999999999999999999999999999999999999999999999998
Q ss_pred HHHHHhhH-----HHhHHHHHhhhHHHHHHHHHhhcccCcchhhhhcCChhHHHHHHHhhcCCCcChHHHHHHHHHHhhh
Q psy15227 159 AILLIGNH-----VSYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQE 233 (515)
Q Consensus 159 ~~~~l~~~-----l~wr~~f~i~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (515)
+++.++.. .|||..|++.++..++..+..++.||+++.. +++++ .
T Consensus 158 lg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~~~e~~~~~---~~~~~--------------~------------- 207 (491)
T PRK11010 158 VSGGLALWLADRYLGWQGMYWLMAALLIPCIIATLLAPEPTDTI---PVPKT--------------L------------- 207 (491)
T ss_pred HHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhcCCCcccc---ccccc--------------h-------------
Confidence 88866543 3899999999888777766655678865310 00000 0
Q ss_pred hhhchhhhhhhhccccchhHHHHHHHHHHHHHhhchHHHHHHHHhh-hcccCCCCCCcchhH-HHHHHHHHHHHHHHHHH
Q psy15227 234 DLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTL-LPKLDNAYFGPDQCI-LVFMIIMFLSNFLQAPL 311 (515)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~g~l 311 (515)
++....++++.++++..+...... .+... +......+.+.+ .++.|++..+.+... ....++.+++.++.|++
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~ll~~-~l~~~----~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L 282 (491)
T PRK11010 208 EQAVVAPLRDFFGRNNAWLILLLI-VLYKL----GDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGIL 282 (491)
T ss_pred hhhHHHHHHHHHcCcCHHHHHHHH-HHHHH----HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000112345566544433222222 11111 122233344444 455788877887776 45567899999999999
Q ss_pred HhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHH
Q psy15227 312 MDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCAS 391 (515)
Q Consensus 312 ~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~ 391 (515)
+||+++|+.+..+..+.++..+.+...... .++.+......++..+..+...+...++..+..|++.+++..|+.+
T Consensus 283 ~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~----~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~ 358 (491)
T PRK11010 283 MQRLSLFRALMIFGILQGVSNAGYWLLSIT----DKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLS 358 (491)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhc----cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 999999887766555544444332221110 1222222222333222222223444677888889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHH
Q psy15227 392 VALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFNYF 434 (515)
Q Consensus 392 ~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 434 (515)
....+|..+++.+.|.+.|..||...|.+.+++++.+.+....
T Consensus 359 s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~ 401 (491)
T PRK11010 359 ALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLV 401 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988888888888777666543
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-27 Score=235.73 Aligned_cols=370 Identities=10% Similarity=0.071 Sum_probs=248.4
Q ss_pred HHHHHhhhhhccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhh-hHHHHHHHHHHH
Q psy15227 19 SISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIGR-KTTLLLNALLCL 97 (515)
Q Consensus 19 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Gr-r~~l~~~~~l~~ 97 (515)
++..+......+...|.++....+ ++| .+..|+|++.+++.++..++++++|+++||+|| |+++.++.++..
T Consensus 8 ~~~~~~~~~~~~~~~~~l~~~l~~--~~g-----~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~ 80 (418)
T TIGR00889 8 KFMSFLQWFIWGSWLVTLGSYMSK--TLH-----FSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGA 80 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--hcC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 334444455555554444433222 477 999999999999999999999999999999965 778888888888
Q ss_pred HHHHHHHhh-hhhHHHHHHHHhhhhhhhcccchhhhhh--------cccccccccccccccchhhhHHHHHHHHHhhHH-
Q psy15227 98 PTWFLVVSN-KIECLYIARLFIGISKGVAYTAMPIFIG--------EISEHNIRGALGSIPSGFQMVGTLAILLIGNHV- 167 (515)
Q Consensus 98 i~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~--------e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~l- 167 (515)
++..+..+. +++.+++.|++.|++.+...+...++.. |......|.+..| .+|..+++.+++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~ 154 (418)
T TIGR00889 81 LLLFFAAQVTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLD 154 (418)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhc
Confidence 888888888 9999999999999987777666655532 2222233445444 35666666666554
Q ss_pred ---HhHHHHHhhhHHHHHHHHHhhcccCcchhhhhcCChhHHHHHHHhhcCCCcChHHHHHHHHHHhhhhhhchhhhhhh
Q psy15227 168 ---SYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGYLEL 244 (515)
Q Consensus 168 ---~wr~~f~i~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (515)
.|+ +|++.++..++..+..+++||+|+- +++++. +.++..+.+.+++
T Consensus 155 ~~~~~~-~f~~~~~~~~~~~~~~~~~~e~~~~---~~~~~~--------------------------~~~~~~~~~~~~~ 204 (418)
T TIGR00889 155 IELSNI-QLYITAGSSALLGVFALTLPDIPVA---KSTAKM--------------------------SIKVMLGLDAFIL 204 (418)
T ss_pred ccchhH-HHHHHHHHHHHHHHHHhcCCCCCCC---cccccc--------------------------CHHHHhhhhHHHH
Confidence 244 4556666666555555568887531 000000 0000001123456
Q ss_pred hccccchhHHHHHHHHHHHHHhhchHHHHHHHHhhhcccCCCC--------CCcchhHHHHHHHHHHHHHHHHHHHhhhC
Q psy15227 245 LTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAY--------FGPDQCILVFMIIMFLSNFLQAPLMDILG 316 (515)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--------~~~~~~~~~~~~~~~~~~~~~g~l~d~~g 316 (515)
+|++.++...+..+..... ......+.+.+.++.|.++ ...+.......+..+++.+..++++||+|
T Consensus 205 ~k~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g 279 (418)
T TIGR00889 205 FKNKRMAIFFFFSMLLGAP-----LQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFG 279 (418)
T ss_pred hcCCCeeeHHHHHHHHHhH-----HHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 6766554433332222221 2233455566666666443 34577788888899999999999999999
Q ss_pred CchhHHHhhHHHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHH-HHHH
Q psy15227 317 RKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCAS-VALA 395 (515)
Q Consensus 317 rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~-~~~~ 395 (515)
+|+++..+.++.+++...+..... .....+..++..++.+.+.....+....++.|.+|++.|++++|+.+ ....
T Consensus 280 ~r~~l~~~~~~~~v~~~l~~~~~~----~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~ 355 (418)
T TIGR00889 280 IKKVMLLSLVAWALRFGFFAYGDP----EYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNG 355 (418)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCc----chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHh
Confidence 999999988888777655544100 00011233444556666665556666788999999999999999997 6788
Q ss_pred HHHHHHHHHHHHHHhhh------chhHHHHHHHHHHHHHHHHHHHHhhccc
Q psy15227 396 FGSFITTKFHILITKSL------GQHVIFFIYSSVHFCSVVFNYFYLMETK 440 (515)
Q Consensus 396 lg~~~~~~~~g~l~~~~------g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (515)
+|..++|.+.|.+.|+. ||+..|.+.+++.+++.+..+++.+|+.
T Consensus 356 lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~ 406 (418)
T TIGR00889 356 FGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSH 406 (418)
T ss_pred hHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 99999999999999984 5788888888888888777777776653
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-27 Score=235.73 Aligned_cols=337 Identities=15% Similarity=0.132 Sum_probs=237.7
Q ss_pred HhhhhhccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHH
Q psy15227 23 LIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALLCLPTWFL 102 (515)
Q Consensus 23 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~ 102 (515)
+...+......+.+|.+.+ ++| .|+.+.+++.+.+.++..++++++|+++||+|||+++..+.++..++.++
T Consensus 18 ~~~~~~~~~~~p~~~~i~~---~~~-----~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~ 89 (394)
T PRK11652 18 AVGQMAQTIYVPAIADMAR---DLN-----VREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLV 89 (394)
T ss_pred HHHHHHHHHHhccHHHHHH---HhC-----CCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHH
Confidence 3444555666677787765 588 99999999999999999999999999999999999999999999999999
Q ss_pred HHhh-hhhHHHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhhhHHHHHHHHHhhHH----HhHHHHHhhh
Q psy15227 103 VVSN-KIECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHV----SYNSLNIALS 177 (515)
Q Consensus 103 ~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~l----~wr~~f~i~~ 177 (515)
+.++ +++.+++.|++.|++.+...+....+..|.+++++|+++.++.+.+..+|..++|.+++.+ +||+.|++.+
T Consensus 90 ~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~ 169 (394)
T PRK11652 90 ALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLL 169 (394)
T ss_pred HHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHH
Confidence 9888 9999999999999999888888888999999999999999999999998888888877654 8999999988
Q ss_pred HHHHHHHHH-hhcccCcchhhhhcCChhHHHHHHHhhcCCCcChHHHHHHHHHHhhhhhhchhhhhhhhccccchhHHHH
Q psy15227 178 ILPVIFFIL-FSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGYLELLTNKSNRRAFTL 256 (515)
Q Consensus 178 ~~~~~~~~~-~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (515)
+..++..+. .++.||+++.. ++ +++.+.++++.++++..+.....
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~---~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 215 (394)
T PRK11652 170 LLGAGVTFSMARWMPETRPAD---AR-------------------------------RTRVLASYRTLLSNRRFNCYLLM 215 (394)
T ss_pred HHHHHHHHHHHHhCCccCccc---cc-------------------------------hhHHHHHHHHHHcChHHHHHHHH
Confidence 777655443 34577754210 00 00012234455555443322211
Q ss_pred HHHHHHHHHhhchHHHHHHHHhhhcc-cCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHH
Q psy15227 257 VMAASLFQRLGGITSMITYSSTLLPK-LDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFST 335 (515)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~ 335 (515)
.... ..+......+.+.++++ .|.+..+.+.......++.+++..+.+++.||.+++... ......++.+.+
T Consensus 216 -~~~~----~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~ 288 (394)
T PRK11652 216 -LIGT----LAGIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQ--SVICCLLAGLLM 288 (394)
T ss_pred -HHHH----HHHHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 1111 11223334445555555 677766777777777778888888888888888733222 222222222221
Q ss_pred HHHHHhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q psy15227 336 GLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSL 412 (515)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~ 412 (515)
...... .....+.......+.+.+.+...|....+..|.+| ++++++.++.+....+|..+++.+.+.+.+..
T Consensus 289 ~~~~~~---~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~~ 361 (394)
T PRK11652 289 WIPGWF---GVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQTG 361 (394)
T ss_pred HHHHHh---ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 111110 01223444555566666666667777788888877 57899999999999999999999988876543
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-27 Score=232.70 Aligned_cols=356 Identities=10% Similarity=0.025 Sum_probs=260.5
Q ss_pred HHHHHHhhhhhccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHH----HHHH
Q psy15227 18 ASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTL----LLNA 93 (515)
Q Consensus 18 ~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l----~~~~ 93 (515)
+.+..+......+...|.+|.+.+ +++ .|..++|++.+++.+...++++++|+++||+|||+.. ..+.
T Consensus 9 l~~~~~~~~~~~~~~~p~l~~~l~---~~g-----~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~ 80 (382)
T TIGR00902 9 LALGFFGYFCAYGIFLPFFPAWLK---GIG-----LGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALAS 80 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HcC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 334455556667788888888866 478 9999999999999999999999999999999985433 2222
Q ss_pred HHHHHHHHHHHhh-hhhHHHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhhhHHHHHHHHHhhHH----H
Q psy15227 94 LLCLPTWFLVVSN-KIECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHV----S 168 (515)
Q Consensus 94 ~l~~i~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~l----~ 168 (515)
.+..+ ..+..+ +++.+++.|+++|.+.+...|...++..++ +++|++..+....+.++|.+++|.+++.+ |
T Consensus 81 ~l~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g 156 (382)
T TIGR00902 81 AIFAA--AFSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFD 156 (382)
T ss_pred HHHHH--HHHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 22222 234456 899999999999999988889988887664 46789999999999999999998887665 8
Q ss_pred hHHHHHhhhHHHHHHHHHhhcccCcchhhhhcCChhHHHHHHHhhcCCCcChHHHHHHHHHHhhhhhhchhhhhhhhccc
Q psy15227 169 YNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGYLELLTNK 248 (515)
Q Consensus 169 wr~~f~i~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (515)
||..|++.+...++..+ .+.++|+++. +++.+ +++..+..+.++++|+|
T Consensus 157 ~~~~f~~~~~~~~~~~~-~~~~~~~~~~---~~~~~---------------------------~~~~~~~~~~~~~l~~~ 205 (382)
T TIGR00902 157 EQNILAILTAGLAFMLI-GFLIKPTIPP---KDAIP---------------------------EDESQGDSAFIALLKNP 205 (382)
T ss_pred hhHHHHHHHHHHHHHHH-HHHcCCCCCC---Ccccc---------------------------ccccccchhHHHHHcCh
Confidence 99998887655333222 2333332110 00000 00001112355677765
Q ss_pred cchhHHHHHHHHHHHHHhhchHHHHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHH
Q psy15227 249 SNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALG 328 (515)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~ 328 (515)
+.+......+. ..........+.|.++++.|.+....+.......+..+++.++.+++.||+|+|+.+..+.+..
T Consensus 206 ~~~~~l~~~~l-----~~~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~ 280 (382)
T TIGR00902 206 MNLRFLAAVCL-----IQGAHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIAC 280 (382)
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHH
Confidence 44432222221 1123455666778888888999888888888889999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHH-HHHHHHHHHHHHHHHH
Q psy15227 329 CLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCAS-VALAFGSFITTKFHIL 407 (515)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~-~~~~lg~~~~~~~~g~ 407 (515)
.+....+.. .++.+..+....+.++.++...+....++.+. |++.|++++++.+ ....+|..++|.+.|.
T Consensus 281 ~~~~~~~~~--------~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~ 351 (382)
T TIGR00902 281 VGRWAIIGA--------IEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGF 351 (382)
T ss_pred HHHHHHHHh--------HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888877765 45556667777888888877777777888888 9999999999986 4678999999999999
Q ss_pred HHhhhchhHHHHHHHHHHHHHHHH
Q psy15227 408 ITKSLGQHVIFFIYSSVHFCSVVF 431 (515)
Q Consensus 408 l~~~~g~~~~~~~~~~~~~~~~~~ 431 (515)
+.|+.|. ..|+..+++.+++.++
T Consensus 352 l~~~~g~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 352 IYPTLGA-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHhccH-HHHHHHHHHHHHHHHH
Confidence 9999986 5777777777665433
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.4e-27 Score=232.59 Aligned_cols=355 Identities=13% Similarity=0.108 Sum_probs=230.0
Q ss_pred HHHHhhhhhccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHH-HhhhhhhhHhhhhhhhhhhHHH-HHHHHHHH
Q psy15227 20 ISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDL-GNAISPIFAGILVEKIGRKTTL-LLNALLCL 97 (515)
Q Consensus 20 l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~l-g~~i~~~~~G~l~Dr~Grr~~l-~~~~~l~~ 97 (515)
+..+..+.......|.+|.... ++++ .|.+++|++.+...+ +..++.+++|+ +||+||||.+ ..+.++..
T Consensus 22 ~~~~~~~~~~~~~~p~~~~~l~--~~~~-----~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~ 93 (393)
T PRK15011 22 IVAFLTGIAGALQTPTLSIFLT--DEVH-----ARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGV 93 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--hhcC-----CCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHH
Confidence 3345556666666677665432 2688 999999999876655 66666655666 9999999875 45566666
Q ss_pred HHHHHHHhh-hhhHHHHHHHHhhhhhhhcccchhhhhhccccccccc--ccccccchhhhHHHHHHHHHhhHH----HhH
Q psy15227 98 PTWFLVVSN-KIECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRG--ALGSIPSGFQMVGTLAILLIGNHV----SYN 170 (515)
Q Consensus 98 i~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~--~~~~~~~~~~~lG~~~~~~l~~~l----~wr 170 (515)
++..+.+++ +++.+++.+.+.|...+...+....++.|+.++++|. ...++.+.+.++|.+++|.++..+ |||
T Consensus 94 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~ 173 (393)
T PRK15011 94 LACTLFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFT 173 (393)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChH
Confidence 777777888 8888776655554445567788888888887766553 345677778888888888887654 999
Q ss_pred HHHHhhhHHHHHHHHHhh-cccCcchhhhhcCChhHHHHHHHhhcCCCcChHHHHHHHHHHhhhhhhchhhhhhhhcccc
Q psy15227 171 SLNIALSILPVIFFILFS-FVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGYLELLTNKS 249 (515)
Q Consensus 171 ~~f~i~~~~~~~~~~~~~-~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (515)
..|++.++..++..+..+ ++||.++. + +.++ + + .. ...++++
T Consensus 174 ~~f~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~--------------------------~-~---~~---~~~~~~~ 216 (393)
T PRK15011 174 VMYLSAAVAFIVCGVMVWLFLPSMRKE---L-PLAT--------------------------G-T---LE---APRRNRR 216 (393)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCccCCC---C-cccc--------------------------c-c---cc---ccccccc
Confidence 999999888776665544 47876421 0 0000 0 0 00 0001111
Q ss_pred chhHHHHHHHHHHHHHhhchHHHHHHHHhhhc-ccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHH
Q psy15227 250 NRRAFTLVMAASLFQRLGGITSMITYSSTLLP-KLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALG 328 (515)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~ 328 (515)
.....+. ..... .........+.|.+++ +.+.+..+.+.......+..+++.++.|+++||++||+.+..+....
T Consensus 217 ~~~~~~~---~~~~~-~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~ 292 (393)
T PRK15011 217 DTLLLFV---ICTLM-WGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAG 292 (393)
T ss_pred cHHHHHH---HHHHH-HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 1111111 11111 1123334456776664 46777677777777777778889999999999999998776655544
Q ss_pred HHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy15227 329 CLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILI 408 (515)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l 408 (515)
.+....+.. .++.+.......+.++..+...+....+..|.+|+ .|+++.++.+...++|..++|.+.|.+
T Consensus 293 ~~~~~~~~~--------~~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i 363 (393)
T PRK15011 293 VCFYAGMLM--------AHSPAILLGLQLLNAIYIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIV 363 (393)
T ss_pred HHHHHHHHH--------HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443322221 22233333333333333333334445677888885 589999999999999999999999999
Q ss_pred HhhhchhHHHHHHHHHHHHHHHHH
Q psy15227 409 TKSLGQHVIFFIYSSVHFCSVVFN 432 (515)
Q Consensus 409 ~~~~g~~~~~~~~~~~~~~~~~~~ 432 (515)
.|..|++..+.+.+++.+++.+..
T Consensus 364 ~~~~g~~~~~~~~~~~~~~~~~~~ 387 (393)
T PRK15011 364 AEIWNYHAVFWFALVMIIATLFCL 387 (393)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHH
Confidence 999999888877776666665554
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-27 Score=233.89 Aligned_cols=331 Identities=14% Similarity=0.166 Sum_probs=231.2
Q ss_pred hccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhh-
Q psy15227 28 WIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALLCLPTWFLVVSN- 106 (515)
Q Consensus 28 ~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~- 106 (515)
..++..|.+|.+.+ ++| .++.+.+++.+++.++..++++++|+++||+|||+++..+.++.+++.+++.+.
T Consensus 6 ~~~~~~p~~~~~~~---~~~-----~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~ 77 (377)
T PRK11102 6 AIDMYLPALPVIAA---DFG-----VSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQ 77 (377)
T ss_pred HHHHHhccHHHHHH---HhC-----CCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHc
Confidence 34456677777765 588 999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhhhHHHHHHHHHhhHH----HhHHHHHhhhHHHHH
Q psy15227 107 KIECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHV----SYNSLNIALSILPVI 182 (515)
Q Consensus 107 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~l----~wr~~f~i~~~~~~~ 182 (515)
+++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.++..+ +||+.|++.+++.++
T Consensus 78 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 157 (377)
T PRK11102 78 TIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAIL 157 (377)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999988887654 899999988888776
Q ss_pred HHHHh-hcccCcchhhhhcCChhHHHHHHHhhcCCCcChHHHHHHHHHHhhhhhhchhhhhhhhccccchhHHHHHHHHH
Q psy15227 183 FFILF-SFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGYLELLTNKSNRRAFTLVMAAS 261 (515)
Q Consensus 183 ~~~~~-~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (515)
..+.. +++||+++. +++ ++ .+. ++...++++.++++..+... . .
T Consensus 158 ~~~~~~~~~~~~~~~---~~~-~~------------~~~--------------~~~~~~~~~~~~~~~~~~~~----~-~ 202 (377)
T PRK11102 158 AAALVFFFIPETLPK---ERR-QP------------FHL--------------RTTIRNFASLFRHKRVLGYM----L-A 202 (377)
T ss_pred HHHHHHHhCCccCcc---ccc-CC------------CCh--------------HHHHHHHHHHHcChHHHHHH----H-H
Confidence 65544 457775421 000 00 000 00012334555554322211 1 1
Q ss_pred HHHHhhchHHHHHHHHhhh-cccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHH
Q psy15227 262 LFQRLGGITSMITYSSTLL-PKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYL 340 (515)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~ 340 (515)
......+......+.|.++ +..|.++.+.+.......+..+++.++.+++.||+|||+.+..+..+..+..+.+.....
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~ 282 (377)
T PRK11102 203 SGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSAL 282 (377)
T ss_pred HHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111222333444445444 446888788888889999999999999999999999999888777654443332222111
Q ss_pred hhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHH-HHHHHHHHHHHH
Q psy15227 341 YQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVAL-AFGSFITTKFHI 406 (515)
Q Consensus 341 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~-~lg~~~~~~~~g 406 (515)
. +...+...+...++..+.....+.......|..| +.++++.++.+... .++..+++.+.+
T Consensus 283 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~ 344 (377)
T PRK11102 283 L----DLGFWALVVGVAAFVGCVSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSL 344 (377)
T ss_pred H----hhhHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0 1122333333333333333334444456677766 78899999877654 355556655433
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.5e-27 Score=229.03 Aligned_cols=326 Identities=11% Similarity=0.069 Sum_probs=237.0
Q ss_pred cchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhh-hh
Q psy15227 30 AWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALLCLPTWFLVVSN-KI 108 (515)
Q Consensus 30 ~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~-~~ 108 (515)
....+.+|.+.+ ++| .|.++.+++.+.+.++..+++++.|+++||+|||+++.++.++..++.+.+ .. +.
T Consensus 17 ~~~~~~lp~l~~---~~~-----~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~ 87 (355)
T TIGR00896 17 TSVGPLLPQIRS---ALG-----MSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGT 87 (355)
T ss_pred ccCcccHHHHHH---HhC-----CCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccH
Confidence 456778888766 588 999999999999999999999999999999999999999999888888877 66 89
Q ss_pred hHHHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhhhHHHHHHHHHhhHH------HhHHHHHhhhHHHHH
Q psy15227 109 ECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHV------SYNSLNIALSILPVI 182 (515)
Q Consensus 109 ~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~l------~wr~~f~i~~~~~~~ 182 (515)
+.+++.|++.|++.+...+.....+.|+++ ++|++++++.+.+.++|..+++.+...+ +||+.|...++..++
T Consensus 88 ~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~ 166 (355)
T TIGR00896 88 ALLFAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALL 166 (355)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 999999999999999988888889999986 5799999999999999888887776544 399988776655443
Q ss_pred HHHHhhcccCcchhhhhcCChhHHHHHHHhhcCCCcChHHHHHHHHHHhhhhhhchhhhhhhhccccchhHHHHHHHHHH
Q psy15227 183 FFILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGYLELLTNKSNRRAFTLVMAASL 262 (515)
Q Consensus 183 ~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (515)
... .++||.++. ++ ++++..+...++.+|++..+... ...
T Consensus 167 ~~~--~~~~~~~~~------~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 206 (355)
T TIGR00896 167 ALL--AWIPQVRRR------VA---------------------------ANQTTTRLTPVRIWRSPLAWQVT-----VFF 206 (355)
T ss_pred HHH--HHhhhhccc------cC---------------------------CCCCCCCCCCchhhcCHhHHHHH-----HHH
Confidence 322 234443210 00 00000011234455554332211 111
Q ss_pred HHHhhchHHHHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhC-CchhHHHhhHHHHHHHHHHHHHHHh
Q psy15227 263 FQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILG-RKPLSCFSAALGCLLTFSTGLFYLY 341 (515)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g-rr~~~~~~~~~~~~~~~~~~~~~~~ 341 (515)
......+.....+.|.++++.|.+..+.+.......++.++++++.|++.||++ ||+.+..+..+.+++.+.+..
T Consensus 207 ~~~~~~~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~---- 282 (355)
T TIGR00896 207 GLQSGLYYSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLF---- 282 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHH----
Confidence 122223445667888888888888888889999999999999999999999994 666666666666666555443
Q ss_pred hCCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccc-cchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhch
Q psy15227 342 QGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELF-PINVRCQASSCASVALAFGSFITTKFHILITKSLGQ 414 (515)
Q Consensus 342 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~ 414 (515)
....... ....+++++.+...+...+...+.. +++.++...++.+...+++..++|.+.|.+.|+.|.
T Consensus 283 ----~~~~~~~-~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~ 351 (355)
T TIGR00896 283 ----APMHGLW-AWALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGN 351 (355)
T ss_pred ----hhhhHHH-HHHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1111111 2345566666666666555555443 456778999999999999999999999999998874
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-26 Score=227.79 Aligned_cols=369 Identities=11% Similarity=0.057 Sum_probs=242.5
Q ss_pred HHHhhhhhccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHHHHHHHHHHHHH
Q psy15227 21 SLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALLCLPTW 100 (515)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~~~~~l~~i~~ 100 (515)
..++.....+...|.+|....+ ++| .++.+.|++.+.+.++..+++++.|+++||+|||+.++.+.....++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~--~~g-----~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~ 82 (396)
T TIGR00882 10 FFFLYFFIMSAYFPFFPIWLHD--VNG-----LSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLF 82 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--hcC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 3444445555666676654332 477 999999999999999999999999999999999999998766665544
Q ss_pred HHHHh--------h-hhhHHHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhhhHHHHHHHHHhhHH---H
Q psy15227 101 FLVVS--------N-KIECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHV---S 168 (515)
Q Consensus 101 ~~~~~--------~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~l---~ 168 (515)
..... . ....+.+.|++.|++.+...+....+..|..+ +++...+......++|..+++.+++.+ +
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~ 160 (396)
T TIGR00882 83 APFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCASIAGILFSID 160 (396)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--hcccccchhhhhcccHHHHHHHHHhhhhccC
Confidence 33211 1 23345667888899888888888777766432 345566777777778888888777655 9
Q ss_pred hHHHHHhhhHHHHHHHHHhhc-ccCcchhhhhcCChhHHHHHHHhhcCCCcChHHHHHHHHHHhhhhhhchhhhhhhhcc
Q psy15227 169 YNSLNIALSILPVIFFILFSF-VPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGYLELLTN 247 (515)
Q Consensus 169 wr~~f~i~~~~~~~~~~~~~~-~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (515)
||.+|++.++++++..+..+. .||+|+. ++.+++ . +.++++++..+.++.+|+
T Consensus 161 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~---------------------~-~~~~~~~~~~~~~~~l~~ 214 (396)
T TIGR00882 161 PQIVFWLGSGFALILMLLLMFAKPKAPSS----ATVANA---------------------L-GANASAFSLKLALELFRQ 214 (396)
T ss_pred chHHHHHHHHHHHHHHHHHHHhCCCCchh----hhhhcc---------------------c-ccccCCCCHHHHHHHHcC
Confidence 999999998888776655544 4443321 000000 0 000111122345677777
Q ss_pred ccchhHHHHHHHHHHHHHhhchHHHHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHH
Q psy15227 248 KSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAAL 327 (515)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~ 327 (515)
|..+......+....... ........|.+.+..+.+.+....+.......+...++....+++.||+|+|+.+..+..+
T Consensus 215 ~~~~~~~l~~~~~~~~~~-~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l 293 (396)
T TIGR00882 215 RKFWMFVLYVVGVACVYD-VFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTI 293 (396)
T ss_pred CcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHH
Confidence 654432222211111111 0011223333333333344434456677777788888999999999999999998888777
Q ss_pred HHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhH-HHHHHHHHHHHHHHHHH
Q psy15227 328 GCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSC-ASVALAFGSFITTKFHI 406 (515)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~-~~~~~~lg~~~~~~~~g 406 (515)
.++...+... .++.+..+....+.+.+..........+..+..|++.++++.+. .+....+|+.+++.+.|
T Consensus 294 ~~l~~~~~~~--------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G 365 (396)
T TIGR00882 294 MSVRIIGSSF--------ATTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAG 365 (396)
T ss_pred HHHHHHHHHh--------cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHH
Confidence 7776655443 34455555555555555533333444566777788888887776 57889999999999999
Q ss_pred HHHhhhchhHHHHHHHHHHHHHHHHHH
Q psy15227 407 LITKSLGQHVIFFIYSSVHFCSVVFNY 433 (515)
Q Consensus 407 ~l~~~~g~~~~~~~~~~~~~~~~~~~~ 433 (515)
++.|..|++.+|.+.+++.++..+...
T Consensus 366 ~l~~~~G~~~~f~~~~~~~~i~~~~~~ 392 (396)
T TIGR00882 366 NMYDSIGFQGAYLVLGCIVLLFTLISV 392 (396)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998888877766543
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.3e-26 Score=225.53 Aligned_cols=348 Identities=9% Similarity=-0.023 Sum_probs=244.7
Q ss_pred HhhhhhccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhh----HHHHHHHHHHHH
Q psy15227 23 LIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRK----TTLLLNALLCLP 98 (515)
Q Consensus 23 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr----~~l~~~~~l~~i 98 (515)
+......+...|.+|.+.+ +++ .|..++|++.+++.++..++++++|+++||+||| +.+.++..+.
T Consensus 14 ~~~~~~~g~~~p~l~~~l~---~~g-----~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~-- 83 (382)
T PRK11128 14 FGYFFAYGVFLPFWSVWLK---GQG-----YTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF-- 83 (382)
T ss_pred HHHHHHHHHHhhhHHHHHH---hcC-----CCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--
Confidence 3334556777788887765 478 9999999999999999999999999999999984 3333222221
Q ss_pred HHHHHHhh-hhhHHHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhhhHHHHHHHHHhhHH----HhHHHH
Q psy15227 99 TWFLVVSN-KIECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHV----SYNSLN 173 (515)
Q Consensus 99 ~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~l----~wr~~f 173 (515)
........ ++|.+++.|++.|++.+...+...+++.++ +++|+++.+....+.++|..++|.+++.+ +||..|
T Consensus 84 ~~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f 161 (382)
T PRK11128 84 AVAFWFGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAIL 161 (382)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHH
Confidence 22233344 899999999999999998999888887776 34588888888888888888888888765 999999
Q ss_pred HhhhHHHHHHHHHhhcccCcchhhhhcCChhHHHHHHHhhcCCCcChHHHHHHHHHHhhhhhhchhhhhhhhccccchhH
Q psy15227 174 IALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGYLELLTNKSNRRA 253 (515)
Q Consensus 174 ~i~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (515)
++.++..++..+...+.||.++. ++++ ++.++...++++++|+|..+..
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~---------------------------~~~~~~~~~~~~i~~~~~~~~~ 210 (382)
T PRK11128 162 WILTAGVASMLLGQLLRPTIMPQ----GESR---------------------------QQESAGWPAWKALLKEPTVWRF 210 (382)
T ss_pred HHHHHHHHHHHHHHHccCCCCCc----cccc---------------------------cccccccchHHHHHcChhHHHH
Confidence 88776555444433344553210 0000 0000112346677777654443
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHH
Q psy15227 254 FTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTF 333 (515)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~ 333 (515)
....+.... .......+.|.+.++.|.+..+.+.......+..++..++.+++.||+++|+.+..+....++..+
T Consensus 211 ~~~~~l~~~-----~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~ 285 (382)
T PRK11128 211 LLCVSLLQG-----SHAAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWG 285 (382)
T ss_pred HHHHHHHHH-----HhHhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 222222221 123445566667777888877788888888888999999999999999999998888887777766
Q ss_pred HHHHHHHhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHH-HHHHHHHHHHHHHHHHHHhhh
Q psy15227 334 STGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCAS-VALAFGSFITTKFHILITKSL 412 (515)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~-~~~~lg~~~~~~~~g~l~~~~ 412 (515)
.+.. .++.+..++..++.++++....+....+..+. +++++++..+..+ ....+|..++|.+.|.+.|..
T Consensus 286 ~~~~--------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~ 356 (382)
T PRK11128 286 LMGS--------TTALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHL 356 (382)
T ss_pred HHHh--------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5544 34556666667777777755566666777776 5666788888876 446777899999999999999
Q ss_pred chhHHHHHHHHHHHHH
Q psy15227 413 GQHVIFFIYSSVHFCS 428 (515)
Q Consensus 413 g~~~~~~~~~~~~~~~ 428 (515)
|.. .++..+++.+++
T Consensus 357 g~~-~~~~~~~~~~~~ 371 (382)
T PRK11128 357 GAG-VFWVMALVALPA 371 (382)
T ss_pred cHH-HHHHHHHHHHHH
Confidence 874 666666555544
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-25 Score=222.46 Aligned_cols=360 Identities=9% Similarity=0.010 Sum_probs=245.2
Q ss_pred HHHhhhhhccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhh-----hhhH-HHHHHHH
Q psy15227 21 SLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKI-----GRKT-TLLLNAL 94 (515)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~-----Grr~-~l~~~~~ 94 (515)
-++..+...+.....+|.+.++ .| +|.+++|++..+... .+..+++|+++||+ |||| .+.++.+
T Consensus 7 l~~~~~~~~~~~~~~~~~~l~~---~g-----~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~ 76 (402)
T PRK11902 7 LGFASGLPLALTSGTLQAWMTV---EG-----LDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQV 76 (402)
T ss_pred HHHHHhhhHHHHHHHHHHHHHH---cC-----CCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHH
Confidence 3466778888888889988663 57 999999999777665 68999999999999 8865 7888888
Q ss_pred HHHHHHHHHHhh----hhhHHHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhhhHHHHHHHHHhhH----
Q psy15227 95 LCLPTWFLVVSN----KIECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNH---- 166 (515)
Q Consensus 95 l~~i~~~~~~~~----~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~---- 166 (515)
+.+++..+.++. +++.+++..++.+++.+...++..+++.|++|+++|+++.++...+..+|.++++.++..
T Consensus 77 ~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~ 156 (402)
T PRK11902 77 GLAASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADR 156 (402)
T ss_pred HHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 887777776665 477788888888998898999999999999999999999999999999999988876544
Q ss_pred -HHhHHHHHhhhHHHHHHHHHhhcccCcchhhhhcCChhHHHHHHHhhcCCCcChHHHHHHHHHHhhhhhhchhhhhhhh
Q psy15227 167 -VSYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGYLELL 245 (515)
Q Consensus 167 -l~wr~~f~i~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (515)
.+||..|++.++..++..+..++.||+++.. ++.++ . +++.+.++++++
T Consensus 157 ~~gw~~~f~i~a~~~l~~~l~~~~~~e~~~~~---~~~~~--------------~-------------~~~~~~~~~~l~ 206 (402)
T PRK11902 157 VLGWGNTYLLMAGLMLAGALTTLWAPEPEVPA---RPPRS--------------L-------------GEAVVGPLRDFF 206 (402)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHhcCCCcccc---cccch--------------h-------------HHHHHHHHHHHH
Confidence 3899999998888776655555677764320 00000 0 000122455677
Q ss_pred ccccchhHHHHHHHHHHHHHhhchHHHHHHHHhhhcccCCCCCCcchhHHHHH-HHHHHHHHHHHHHHhhhCCchhHHHh
Q psy15227 246 TNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFM-IIMFLSNFLQAPLMDILGRKPLSCFS 324 (515)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~grr~~~~~~ 324 (515)
++|..+......++...... .......+.+.++.|.++.+.+......+ ++.+++.++.+++.||+++|+.+..+
T Consensus 207 ~~~~~~~~l~~~~l~~~~~~----~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~ 282 (402)
T PRK11902 207 SRRGAWALLLLIVLYKLGDA----FAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLF 282 (402)
T ss_pred hCcCHHHHHHHHHHHHhHHH----HHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 76654443322222222111 11122234445557887666777665544 46889999999999999999887766
Q ss_pred hHHHHHHHHHHHHHHHhhCCCCCCccHHHHHHH----HHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHH
Q psy15227 325 AALGCLLTFSTGLFYLYQGELPNFQYIPYITTL----LYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFI 400 (515)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~ 400 (515)
..+..+..+.+...... .++.+....... ..+.......+....++.+.+|.+. .++......++...
T Consensus 283 ~~~~~l~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~ 354 (402)
T PRK11902 283 GVLQAVSNLGYWVLAVT----PKHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQ----YALLSALASVGRVY 354 (402)
T ss_pred HHHHHHHHHHHHHHHhc----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH----HHHHHHHHHHHHHH
Confidence 66655544333221110 122233333322 2233334445556667777777554 45555566777777
Q ss_pred HHHHHHHHHhhhchhHHHHHHHHHHHHHHHHH
Q psy15227 401 TTKFHILITKSLGQHVIFFIYSSVHFCSVVFN 432 (515)
Q Consensus 401 ~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 432 (515)
++.+.|.+.|+.|++..|.+.+.+++++.++.
T Consensus 355 ~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~ 386 (402)
T PRK11902 355 VGPTSGYLVEAYGWPGFYLMTVVIALPGLALL 386 (402)
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 77889999999999988888887777765554
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-26 Score=227.45 Aligned_cols=339 Identities=17% Similarity=0.134 Sum_probs=224.7
Q ss_pred HHHHHHhhhhhccchhhhhhc-ccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHHHHHHHHH
Q psy15227 18 ASISLLIAGCWIAWPSVMIKR-LTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALLC 96 (515)
Q Consensus 18 ~~l~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~~~~~l~ 96 (515)
.+++.+..........+.+|. +.+ ++| +|+.+.+++.+.+.+++.+++++.|+++||+|||+.+.++.++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-----~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 77 (366)
T TIGR00886 6 SWFGFFLSFSVWFAFSPLAVQMIKD---DLG-----LSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLL 77 (366)
T ss_pred HHHHHHHHHHHHHHhHHhhhHHHHH---HhC-----CCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 344444445555667777784 544 588 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh--hhhHHHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhhhHHHHHHHHHh----hH----
Q psy15227 97 LPTWFLVVSN--KIECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIG----NH---- 166 (515)
Q Consensus 97 ~i~~~~~~~~--~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~----~~---- 166 (515)
.++.++++++ +++.+++.|+++|++.+. .+....++.|++|+++|++++++...+.++|..+++.++ ..
T Consensus 78 ~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~ 156 (366)
T TIGR00886 78 AIPCLWAGLAVQSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFG 156 (366)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc
Confidence 9999998877 789999999999999664 566788999999999999999998866666655554443 32
Q ss_pred ------HHhHHHH-HhhhHHHHHHHHH-hhcccCcchhhhhcCChhHHHHHHHhhcCCCcChHHHHHHHHHHhhhhhhch
Q psy15227 167 ------VSYNSLN-IALSILPVIFFIL-FSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSK 238 (515)
Q Consensus 167 ------l~wr~~f-~i~~~~~~~~~~~-~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (515)
.+||+.| +..++...+..++ ..+.+|+|+.. ++++ +.. ...... ..+++..
T Consensus 157 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~---~~~~~~-------------~~~~~~~ 215 (366)
T TIGR00886 157 AGLPAHLAWGWAFVIVPAGILLLPALLIFFVGADTPPGK----PATG-KLS---FKGARW-------------SVGTGAL 215 (366)
T ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHhcccCCccc----ccch-hcc---cccccc-------------cccchhH
Confidence 2699999 4435444443333 34466665311 0000 000 000000 0000001
Q ss_pred hhhhhhhccccchhHHHHHHHHHHHHHhhchHHHHHHHHhhhcc-cCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCC
Q psy15227 239 TGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPK-LDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGR 317 (515)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr 317 (515)
....+.++++..+...+. .............+.|.++++ .|.++.+.+.......+..++++++.++++||+|+
T Consensus 216 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~ 290 (366)
T TIGR00886 216 GDQLKVFRDRHTWILALL-----YSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGG 290 (366)
T ss_pred HHHHHHHhccchhhHHHH-----HHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhcc
Confidence 133455665543322111 111112234455666777755 58887788888888889999999999999999999
Q ss_pred chhHHHhhHHHHHHHHHHHHHHHhhCCCCC-CccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHH
Q psy15227 318 KPLSCFSAALGCLLTFSTGLFYLYQGELPN-FQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAF 396 (515)
Q Consensus 318 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~l 396 (515)
|+.+..+......+..++..... .+ +.+.......+...+.+...+..+...++..| +++|++.|+.+...++
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~ 364 (366)
T TIGR00886 291 ARKLLMSFLGVAMGAFLVVLGLV-----SPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNL 364 (366)
T ss_pred chhHHHHHHHHHHHHHHHHhcCC-----CcchHHHHHHHHHHHHHHhccccchhhhcchhhch-hhcccHHHHHHHhccC
Confidence 88777666655555544443111 11 22333333334444444445566678888877 6899999999888776
Q ss_pred H
Q psy15227 397 G 397 (515)
Q Consensus 397 g 397 (515)
|
T Consensus 365 g 365 (366)
T TIGR00886 365 G 365 (366)
T ss_pred C
Confidence 5
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.9e-25 Score=205.26 Aligned_cols=360 Identities=17% Similarity=0.182 Sum_probs=279.2
Q ss_pred HHHHHHHHHHHhhhhhccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHHHHH
Q psy15227 13 IATNTASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLN 92 (515)
Q Consensus 13 ~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~~~ 92 (515)
.....++...++.|+......+.+|.+++ .++ ++..|.+++...++.|+.+.+++.|++.+|+|+|+.++.+
T Consensus 13 ~~~v~~t~lFfl~G~~~~l~diLip~l~~---~f~-----ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lg 84 (422)
T COG0738 13 LAFVLLTSLFFLWGFITCLNDILIPHLKE---VFD-----LTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLG 84 (422)
T ss_pred eHHHHHHHHHHHHHHHhhcchhhHHHHHH---HhC-----ccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHH
Confidence 34455555668889999999999999977 489 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH---hh-hhhHHHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhhhHHHHHHHHHhhHH-
Q psy15227 93 ALLCLPTWFLVV---SN-KIECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHV- 167 (515)
Q Consensus 93 ~~l~~i~~~~~~---~~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~l- 167 (515)
+.++++++.+.. .. ++..++++-++.|.|.+...++++.+++...++++-.+.+++.+...++|.+++|+++..+
T Consensus 85 L~l~avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~li 164 (422)
T COG0738 85 LLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLI 164 (422)
T ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 999999999985 33 8999999999999999999999999999999998888999999999999999999998654
Q ss_pred ----------------------HhHHHHHhhhHHHHHHHHHhhc--ccCcchhhhhcCChhHHHHHHHhhcCCCcChHHH
Q psy15227 168 ----------------------SYNSLNIALSILPVIFFILFSF--VPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEE 223 (515)
Q Consensus 168 ----------------------~wr~~f~i~~~~~~~~~~~~~~--~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (515)
.||++|...+...++..+.... .|+.+.-
T Consensus 165 ls~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~--------------------------- 217 (422)
T COG0738 165 LSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVA--------------------------- 217 (422)
T ss_pred HhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCcc---------------------------
Confidence 3777888777777666655543 3442210
Q ss_pred HHHHHHHhhhhhhchhhhhhhhccccchhHHHHHHHHHHHHHhhchHHHHHHHHhhhcc-cCCCCCCcchhHHHHHHHHH
Q psy15227 224 MNSIMDKTQEDLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPK-LDNAYFGPDQCILVFMIIMF 302 (515)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~ 302 (515)
+.++.+.++....+++++|+.+.- .+..+++.. .......+.+.++.+ .|.+..++....+....+.+
T Consensus 218 ------~~~~~~~~~~~~~~l~~~~~~~~g-vl~~FlYVG----~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~ 286 (422)
T COG0738 218 ------APSLGASGSAGLSSLFQNKHLRLG-VLAIFLYVG----AEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFM 286 (422)
T ss_pred ------cccccccccchHHHHHhChHHHHH-HHHHHHHHh----HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHH
Confidence 000111111145677777654433 233333333 245566777777777 68888899999999999999
Q ss_pred HHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchh
Q psy15227 303 LSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINV 382 (515)
Q Consensus 303 ~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~ 382 (515)
+|++++.++.+|+...+.+.....+..+.++...+ .+. ........+.+.+....+|..++...+..| ++
T Consensus 287 vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l--------~~g-~v~~~~l~~ig~F~simfPTIfslal~~l~-~~ 356 (422)
T COG0738 287 VGRFIGSALMSRIKPEKYLAFYALIAILLLLAVAL--------IGG-VVALYALFLIGLFNSIMFPTIFSLALKNLG-EH 356 (422)
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH--------hcC-hHHHHHHHHHHHHhHHHHHHHHHHHHhccC-cc
Confidence 99999999999999999888777666665555554 222 444555666777778889999999999988 33
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHH
Q psy15227 383 RCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSV 429 (515)
Q Consensus 383 r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 429 (515)
....|....+..+|+++.|++.|++.|+.|....+......|.+..
T Consensus 357 -ts~~s~~l~maivGGAiiP~l~G~i~d~~g~~~~~~~~pllc~lyV 402 (422)
T COG0738 357 -TSVGSGLLVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCYLYV 402 (422)
T ss_pred -ccccceeeeeheecchHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 4455556677889999999999999999998777665555555554
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.7e-26 Score=252.51 Aligned_cols=344 Identities=12% Similarity=-0.006 Sum_probs=237.1
Q ss_pred hhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHHHH---HHHHHHHHHHHHHhh-hhhHHHHHHHHhhhhhhhcccchhh
Q psy15227 56 YQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLL---NALLCLPTWFLVVSN-KIECLYIARLFIGISKGVAYTAMPI 131 (515)
Q Consensus 56 ~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~~---~~~l~~i~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~ 131 (515)
...++..+++.++++++++++|+++||+|||+++.. ..++..+..+.+... ++++++++|+++|++.+...|+..+
T Consensus 52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a 131 (1140)
T PRK06814 52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYS 131 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHH
Confidence 457888999999999999999999999999998643 223333333334445 9999999999999999999999999
Q ss_pred hhhcccccccccccccccchhhhHHHHHHHHHhhHH----HhHHHHHhhhHHHHHHHHHhhcccCcchhhhhcCChhHHH
Q psy15227 132 FIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHV----SYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTE 207 (515)
Q Consensus 132 ~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~l----~wr~~f~i~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~ 207 (515)
++.+++++++|++++++.+++.++|.++||.+++.+ +|++.|+..++..++.+++.+++|+++.-. ++...+.
T Consensus 132 ~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~- 208 (1140)
T PRK06814 132 ILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLFIPKTGNAA--PDLKIDR- 208 (1140)
T ss_pred hhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhCCCCCCCC--CCCeecc-
Confidence 999999999999999999999999999999999877 899998555555555555556677654210 0000000
Q ss_pred HHHHhhcCCCcChHHHHHHHHHHhhhhhhchhhhhhhhccccchhHHHHHHHHHHHHHhhchHHHHHHHHhhhcc-cCCC
Q psy15227 208 KSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPK-LDNA 286 (515)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~ 286 (515)
. . .+.....++.+.+++..+...+...+... ....+..+.|.++++ .|.+
T Consensus 209 ----------~-~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~p~~~~~~~g~~ 259 (1140)
T PRK06814 209 ----------N-I-------------IRSTITLLKYAKADKRIWLAILGISWFWL-----VGAVVLSQLPLLAKETLGGD 259 (1140)
T ss_pred ----------c-h-------------HHHHHHHHHHHhcCchHHHHHHHHHHHHH-----HHHHHHHHhHHHHHHHcCCc
Confidence 0 0 00011234555565544332222222211 123455567777765 5888
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHh--hC----------CCCCCccHHHH
Q psy15227 287 YFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLY--QG----------ELPNFQYIPYI 354 (515)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~--~~----------~~~~~~~~~~~ 354 (515)
....+.+.+..+++.++|.++.++++|+..+++.+..+.++.+++.+.+.+.... .. ....+.+...+
T Consensus 260 ~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (1140)
T PRK06814 260 ENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILI 339 (1140)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHH
Confidence 7888999999999999999999999988777666555555544444433321000 00 00133455555
Q ss_pred HHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhh-hchhHHHHHHHHHHHHHHHH
Q psy15227 355 TTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKS-LGQHVIFFIYSSVHFCSVVF 431 (515)
Q Consensus 355 ~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~-~g~~~~~~~~~~~~~~~~~~ 431 (515)
..++++++.+...+...+++.+..|++.||+++|+.+++..++..+++.+.+.+.+. .++...+++.+.+.++....
T Consensus 340 ~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 417 (1140)
T PRK06814 340 DLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALANLIVAIL 417 (1140)
T ss_pred HHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence 566666666666666778999999999999999999999999999999999998753 45555555544444444333
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.6e-25 Score=248.01 Aligned_cols=347 Identities=13% Similarity=0.007 Sum_probs=236.2
Q ss_pred cchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHH---hh-hhhHHHHHHHHhhhhhhhcccc
Q psy15227 53 LNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALLCLPTWFLVV---SN-KIECLYIARLFIGISKGVAYTA 128 (515)
Q Consensus 53 ~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~~---~~-~~~~l~~~r~l~G~~~g~~~~~ 128 (515)
.+....+++.+++.+++.++++++|+++||+|||++++++.++..++.++.. .. +++.++++|+++|++.+...++
T Consensus 44 ~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 123 (1146)
T PRK08633 44 EQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPA 123 (1146)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchH
Confidence 3455679999999999999999999999999999999998877666555443 34 8999999999999999999999
Q ss_pred hhhhhhcccccccccccccccchhhhHHHHHHHHHhhHH-H------------hHHHHHhhhHHH-HHHHHHhhcccCcc
Q psy15227 129 MPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHV-S------------YNSLNIALSILP-VIFFILFSFVPETP 194 (515)
Q Consensus 129 ~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~l-~------------wr~~f~i~~~~~-~~~~~~~~~~pesp 194 (515)
..+++.|++|+++|++++++.+.+..+|.++++.+++.+ . |++.+.+..+.. ++.+++.+.+||+|
T Consensus 124 ~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (1146)
T PRK08633 124 KYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVP 203 (1146)
T ss_pred HHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCC
Confidence 999999999999999999999999999999998888765 1 233333333322 33334444578876
Q ss_pred hhhhhcCChhHHHHHHHhhcCCCcChHHHHHHHHHHhhhhhhchhhhhhhhccccchhHHHHHHHHHHHHHhhchHHHHH
Q psy15227 195 HFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMIT 274 (515)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (515)
+....+++.++ ..........++.+++++..+...+...+... .......
T Consensus 204 ~~~~~~~~~~~-------------------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~ 253 (1146)
T PRK08633 204 AAAPEVFDKKK-------------------------YLFPKLLWRNLKLLRSDRVLWLAIIGLSYFWF-----ISQLAQA 253 (1146)
T ss_pred CCCcccccccc-------------------------cccHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-----HHHHHHH
Confidence 43211100000 00000011234455555433322221111111 1233444
Q ss_pred HHHhhhc-ccCCCCC-CcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCCccHH
Q psy15227 275 YSSTLLP-KLDNAYF-GPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIP 352 (515)
Q Consensus 275 ~~~~~~~-~~g~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (515)
+.|.++. ..|.+.. ..+.+.....++.+++.++.+++.||+++++.+.++.++.+++.+++.. ..+.+..
T Consensus 254 ~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~ 325 (1146)
T PRK08633 254 NFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPT--------APSLASV 325 (1146)
T ss_pred hhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHH--------hhhHHHH
Confidence 5555554 4687766 7788888889999999999999999999888887777777666665554 2334455
Q ss_pred HHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhh-hchhHHHHHHHHHHHHHHHH
Q psy15227 353 YITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKS-LGQHVIFFIYSSVHFCSVVF 431 (515)
Q Consensus 353 ~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~-~g~~~~~~~~~~~~~~~~~~ 431 (515)
++..++++++.+...+...+++.+..|++.||+++|+.+.+..+|..+++.+.+.+... .++...+++.+.+.++..+.
T Consensus 326 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 405 (1146)
T PRK08633 326 LVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTLIGTLY 405 (1146)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence 55566666666656666678889999999999999999999999998887776655431 23334455545444444444
Q ss_pred HHHHhh
Q psy15227 432 NYFYLM 437 (515)
Q Consensus 432 ~~~~~~ 437 (515)
.....+
T Consensus 406 ~~~~~~ 411 (1146)
T PRK08633 406 TLLLLP 411 (1146)
T ss_pred HHHHhH
Confidence 333333
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.4e-25 Score=221.41 Aligned_cols=371 Identities=16% Similarity=0.126 Sum_probs=266.0
Q ss_pred ccchhHHHHHHHHHHHHHHhhhhhccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhhh
Q psy15227 5 KRSYVYQIIATNTASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIG 84 (515)
Q Consensus 5 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~G 84 (515)
.+..++.|..-.+..++..+......+... +.. -|+..++++.++..+...+.++++|.++||++
T Consensus 9 ~~~Fr~lw~a~~iS~lG~~~~~va~~wlv~----------~lt-----~S~~~valv~~a~~LP~~Llsl~aG~laDr~d 73 (524)
T PF05977_consen 9 NRNFRRLWIAQLISNLGDWMQTVALAWLVT----------QLT-----GSPLMVALVQAASTLPILLLSLFAGALADRFD 73 (524)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHh-----CCHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 344445555555555555554444444321 134 58889999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHh----h--hhhHHHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhhhHHHH
Q psy15227 85 RKTTLLLNALLCLPTWFLVVS----N--KIECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTL 158 (515)
Q Consensus 85 rr~~l~~~~~l~~i~~~~~~~----~--~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ 158 (515)
|||+++.+-++..+..+..++ . +.+.+++.-++.|++.+...|+..+.+.|..|+++...+.++.++..++..+
T Consensus 74 rrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~ 153 (524)
T PF05977_consen 74 RRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARI 153 (524)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHh
Confidence 999999997776555443332 2 7899999999999999999999999999999999999999999999988888
Q ss_pred HHHHHhhHH----HhHHHHHhhhHHHHHHHHHhhcccCcchhhhhcCChhHHHHHHHhhcCCCcChHHHHHHHHHHhhhh
Q psy15227 159 AILLIGNHV----SYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQED 234 (515)
Q Consensus 159 ~~~~l~~~l----~wr~~f~i~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (515)
+||.+++.+ |-.+.|.+.++..++........+..++ +++.. ++. -.
T Consensus 154 iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~~----~~~~~----------------~e~---------~~ 204 (524)
T PF05977_consen 154 IGPALGGILVAFFGAAAAFLINALSFLISILALLRWKPPPP----PSSLP----------------RER---------FF 204 (524)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc----ccccc----------------hhh---------hh
Confidence 888887765 7788888887766655444433332110 00000 000 00
Q ss_pred hhchhhhhhhhccccchhHHHHHHHHHHHHHhhchHHHHHHHHhhhcc-cCCCCCCcchhHHHHHHHHHHHHHHHHHHHh
Q psy15227 235 LKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPK-LDNAYFGPDQCILVFMIIMFLSNFLQAPLMD 313 (515)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d 313 (515)
+.-+..++-+.++|..+. .+....+..+ . .......+|.+.++ .+.++...|.+....+++.++|.++.+++.+
T Consensus 205 ~~l~~G~ryv~~~~~l~~-~l~~~~~~~l---~-~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~ 279 (524)
T PF05977_consen 205 SALREGLRYVRSSPPLRS-VLLRSFLFNL---F-ASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRR 279 (524)
T ss_pred hhHHHHHHHHhcchHHHH-HHHHHHHHHH---h-hhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 000112222333332222 2221111111 1 22334456776654 5777788899999999999999999999999
Q ss_pred hhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHH
Q psy15227 314 ILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVA 393 (515)
Q Consensus 314 ~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~ 393 (515)
|+++++++..+.+..+++.+.+++ ..+.+...+..++.|.+.........+...+..|++.||+++++..+.
T Consensus 280 ~~~~~~lv~~~~~~~a~~~~~lal--------~~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~ 351 (524)
T PF05977_consen 280 RLSSRRLVLLASLLFALALLLLAL--------SPSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMV 351 (524)
T ss_pred ccCcchhhHHHHHHHHHHHHHHhc--------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHH
Confidence 999998888888888887777766 555667777777777777666666678889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHH
Q psy15227 394 LAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFN 432 (515)
Q Consensus 394 ~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 432 (515)
...+..+|..+.|.+.+..|...++.+.++..+++.++.
T Consensus 352 ~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~ 390 (524)
T PF05977_consen 352 FFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIA 390 (524)
T ss_pred HHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999888777666555555544
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >KOG2504|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-26 Score=229.90 Aligned_cols=401 Identities=13% Similarity=0.138 Sum_probs=290.8
Q ss_pred chhHHHHHHHHHHHHH-HhhhhhccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhh
Q psy15227 7 SYVYQIIATNTASISL-LIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIGR 85 (515)
Q Consensus 7 ~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Gr 85 (515)
..-+-|.+++...+.. +.++..... +...+.+.+ +++ .+.++++|+.++......+..++.+.+.||+|.
T Consensus 40 dGG~gWvV~~a~fl~~~~~~g~~~~~-Gv~~~~~~~---~f~-----~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~ 110 (509)
T KOG2504|consen 40 DGGWGWVVVFASFLVNLSTDGLINSF-GLLFEELMD---YFG-----SSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGC 110 (509)
T ss_pred CCCeeeeeeHhHHHHHHhhhcchhee-hhhHHHHHH---HhC-----CCccHHHHHHHHHHHHHHHhccHHHHHHhhcCc
Confidence 3445677776666554 334443333 355565655 477 888999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhh-hhhHHHHH-HHHhhhhhhhcccchhhhhhcccccccccccccccchhhhHHHHHHHHH
Q psy15227 86 KTTLLLNALLCLPTWFLVVSN-KIECLYIA-RLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLI 163 (515)
Q Consensus 86 r~~l~~~~~l~~i~~~~~~~~-~~~~l~~~-r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l 163 (515)
|++.+.|.++..+|.++..++ ++|++++. -++.|+|.|+.+......+..+|++| |+.+.|+...+.++|.++-|.+
T Consensus 111 R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~kk-R~lA~Gia~~GsG~G~~~~~~l 189 (509)
T KOG2504|consen 111 RTVMIAGGLVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEKK-RALATGIAVSGTGVGTVVFPPL 189 (509)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHhHHH-HHHHHhhhhccCCcceeeHHHH
Confidence 999999999999999999999 99888876 68899999999999999999888665 9999999999999999998888
Q ss_pred hhHH----HhHHHHHhhhHHHHHHHHHhhcc-cCcchhhhhcCChhHHHHHHHh-----------hcCCCc--ChH---H
Q psy15227 164 GNHV----SYNSLNIALSILPVIFFILFSFV-PETPHFHAAKNNLKKTEKSLKW-----------YRGNKK--DVM---E 222 (515)
Q Consensus 164 ~~~l----~wr~~f~i~~~~~~~~~~~~~~~-pesp~~~~~~~~~~~~~~~~~~-----------~~~~~~--~~~---~ 222 (515)
...+ |||+.+++.+.+.+-..+..... |.+++.... .++..+.... .....+ ..+ .
T Consensus 190 ~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (509)
T KOG2504|consen 190 LKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPN---EEKDLRNSAASVESTPKPVELRISERDSGLKKLSLS 266 (509)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCch---hhhhhccccccccccccccccccccCCCCCCccccc
Confidence 8776 99999999988886665555443 433321111 0000000000 000000 000 0
Q ss_pred HHHHHHHHhhhhh--hchhhh----hhhhccccchhHHHHHHHHHHHHHhhchHHHHHHHHhhhcccCCCCCCcchhHHH
Q psy15227 223 EMNSIMDKTQEDL--KSKTGY----LELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILV 296 (515)
Q Consensus 223 ~~~~~~~~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 296 (515)
+..+.++..++.+ ..+... .++++++ .++.+.........++.....++|.+.++.|++..+++.+.+.
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~-----~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Si 341 (509)
T KOG2504|consen 267 NLATLKRGPDKWRNSPLQAFLSMLDLSLLKDP-----KFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSI 341 (509)
T ss_pred chhhhhhCCccccccchhhhhhhhhHHHHcCc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHH
Confidence 0111111111111 111111 3556653 3444555555555567788889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhCC--chhHHHhhHHHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhh
Q psy15227 297 FMIIMFLSNFLQAPLMDILGR--KPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILV 374 (515)
Q Consensus 297 ~~~~~~~~~~~~g~l~d~~gr--r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 374 (515)
.++..++++++.|++.|+... +.+..++.+..+++.+.++. ....+.......++++..+.........+
T Consensus 342 igi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~--------~~~~~~l~~~~~~fG~~~g~~~~l~~~i~ 413 (509)
T KOG2504|consen 342 IGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPF--------ATTYVGLIVFSILFGFCVGSFSSLTPVIL 413 (509)
T ss_pred HHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHH--------hccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999874 34445555555555545444 44556666677777777777777777789
Q ss_pred cccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc-hhHHHHHHHHHHHHHHHHHH
Q psy15227 375 SELFPINVRCQASSCASVALAFGSFITTKFHILITKSLG-QHVIFFIYSSVHFCSVVFNY 433 (515)
Q Consensus 375 ~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~ 433 (515)
.|+.+.+.-..+.|+...+..++..++|++.|.+.|..| |...|+..+...+++.++.+
T Consensus 414 ~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~ 473 (509)
T KOG2504|consen 414 VDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLL 473 (509)
T ss_pred HHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHH
Confidence 999999999999999999999999999999999999988 76777777777777776653
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.9e-24 Score=214.10 Aligned_cols=406 Identities=11% Similarity=0.000 Sum_probs=246.0
Q ss_pred HHHHHHHHHHHHhhhhhccchhhhhh-cccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhh-hhhhHHH
Q psy15227 12 IIATNTASISLLIAGCWIAWPSVMIK-RLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEK-IGRKTTL 89 (515)
Q Consensus 12 ~~~~~~~~l~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr-~Grr~~l 89 (515)
+..+..+++..+...+......+.++ ++.+ ++| .++.+.+++.+.+.....+..+++|+++|| +||||++
T Consensus 13 p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~---~lg-----~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~ 84 (489)
T PRK10207 13 PRPFFMIFFVELWERFGYYGVQGILAVFFVK---QLG-----FSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTI 84 (489)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HcC-----CCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHH
Confidence 34444455555556665554444443 3333 578 999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHHHHHHHhh-hhh-HHHHHHHHhhhhhhhcccchhhhhhcccccc--cccccccccchhhhHHHHHHHHHhh
Q psy15227 90 LLNALLCLPTWFLVVSN-KIE-CLYIARLFIGISKGVAYTAMPIFIGEISEHN--IRGALGSIPSGFQMVGTLAILLIGN 165 (515)
Q Consensus 90 ~~~~~l~~i~~~~~~~~-~~~-~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~--~r~~~~~~~~~~~~lG~~~~~~l~~ 165 (515)
+++.+++.++++.++++ +.. .++++|+++|+|.|...+...+++.|.+|++ +|+++.++++.+.++|..++|.+++
T Consensus 85 ~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g 164 (489)
T PRK10207 85 VLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAP 164 (489)
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998 644 4558999999999999999999999999877 4577899999999999988887776
Q ss_pred HH----HhHHHHHhhhHHHHHHHHHhhcccCcchhhh--hcCChhHHHHHH-------------HhhcCCCcChHHHHHH
Q psy15227 166 HV----SYNSLNIALSILPVIFFILFSFVPETPHFHA--AKNNLKKTEKSL-------------KWYRGNKKDVMEEMNS 226 (515)
Q Consensus 166 ~l----~wr~~f~i~~~~~~~~~~~~~~~pesp~~~~--~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~ 226 (515)
++ |||+.|++.++..++.++.....++..+... .+++..+..... ..... ..+.......
T Consensus 165 ~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 243 (489)
T PRK10207 165 VIADKFGYSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMH-NVEVANLVLI 243 (489)
T ss_pred HHHHhhChHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHH
Confidence 55 9999999865533333333333332211100 001001100000 00000 0000000000
Q ss_pred H----HH--HhhhhhhchhhhhhhhccccchhHHHHHHHHH--HHHHhhchHHHHHHHHhhhcc-c-----CCCCCCcch
Q psy15227 227 I----MD--KTQEDLKSKTGYLELLTNKSNRRAFTLVMAAS--LFQRLGGITSMITYSSTLLPK-L-----DNAYFGPDQ 292 (515)
Q Consensus 227 ~----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~-----g~~~~~~~~ 292 (515)
. .. -..++.+. .+.+|++ .+..+.+. .......+.......+.+.++ . |+. ..+..
T Consensus 244 ~~~~i~~~~f~~~~~~~----~~~~r~r-----~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~-i~~~~ 313 (489)
T PRK10207 244 VLSIVVTIIFFREAFKL----DKTGRNK-----MFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFS-INPVS 313 (489)
T ss_pred HHHHHHHHHHHHHHhcC----CHHHHHH-----HHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceE-ECHHH
Confidence 0 00 00000000 0222222 21111110 111111112222223333332 1 222 12334
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhCCchh-------HHHhhHHHHHHHHHHHHHHH--hhCCCCCCccHHHHHHHHHHHHH
Q psy15227 293 CILVFMIIMFLSNFLQAPLMDILGRKPL-------SCFSAALGCLLTFSTGLFYL--YQGELPNFQYIPYITTLLYAASY 363 (515)
Q Consensus 293 ~~~~~~~~~~~~~~~~g~l~d~~grr~~-------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~ 363 (515)
......+..++..++.+++.||+++|+. +..++++.+++++.+..... ...+...+.+..+....+.+.+.
T Consensus 314 ~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge 393 (489)
T PRK10207 314 FQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGE 393 (489)
T ss_pred HHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHH
Confidence 4445556677788888999999998863 66677776666554432111 11111223455666777788888
Q ss_pred hcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHh----------hhchhHHHHHHHHHHHHHHHHHH
Q psy15227 364 YGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITK----------SLGQHVIFFIYSSVHFCSVVFNY 433 (515)
Q Consensus 364 ~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~----------~~g~~~~~~~~~~~~~~~~~~~~ 433 (515)
....|....++.+..|++.+|.++|+.+....+|+.++..+...... ...+...|...++.++++.++.+
T Consensus 394 ~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~ 473 (489)
T PRK10207 394 LFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMA 473 (489)
T ss_pred HHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 88888888999999999999999999999999999999887765421 11234566666666666666554
Q ss_pred HHh
Q psy15227 434 FYL 436 (515)
Q Consensus 434 ~~~ 436 (515)
...
T Consensus 474 ~~~ 476 (489)
T PRK10207 474 LMV 476 (489)
T ss_pred HHH
Confidence 433
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-23 Score=210.30 Aligned_cols=411 Identities=10% Similarity=-0.029 Sum_probs=258.4
Q ss_pred HHHHHHHhhhhhccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhh-hhhhHHHHHHHHH
Q psy15227 17 TASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEK-IGRKTTLLLNALL 95 (515)
Q Consensus 17 ~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr-~Grr~~l~~~~~l 95 (515)
.+.+..+...+......+.+|.+..++.++| .+..+.+++.+.+.++..++++++|+++|| +|||+++.++.++
T Consensus 14 ~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg-----~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~ 88 (475)
T TIGR00924 14 TLFFVELWERFSYYGMQGILAVYLVQQAGLG-----FSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIV 88 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC-----CCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHH
Confidence 3334455566666556666665543222367 999999999999999999999999999999 8999999999999
Q ss_pred HHHHHHHHHhh-hhhHHHHHHHHhhhhhhhcccchhhhhhccccccc---ccccccccchhhhHHHHHHHHHhhHH----
Q psy15227 96 CLPTWFLVVSN-KIECLYIARLFIGISKGVAYTAMPIFIGEISEHNI---RGALGSIPSGFQMVGTLAILLIGNHV---- 167 (515)
Q Consensus 96 ~~i~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~---r~~~~~~~~~~~~lG~~~~~~l~~~l---- 167 (515)
.+++.++.+++ +++.++++|++.|+|.|...+...++++|++|+++ |+.+.++.+.+.++|..+++.+++.+
T Consensus 89 ~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~ 168 (475)
T TIGR00924 89 LMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENY 168 (475)
T ss_pred HHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999998 88999999999999999999999999999998764 88899999999999999999888765
Q ss_pred HhHHHHHhhhHHHHHHHHHhhccc----CcchhhhhcCChhHHHHHHHh--------------hcCCCcChHHHHHHH--
Q psy15227 168 SYNSLNIALSILPVIFFILFSFVP----ETPHFHAAKNNLKKTEKSLKW--------------YRGNKKDVMEEMNSI-- 227 (515)
Q Consensus 168 ~wr~~f~i~~~~~~~~~~~~~~~p----esp~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~-- 227 (515)
+||+.|++.++..++..+...+.+ +.|+.. .+.+.++....... ....+..........
T Consensus 169 g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (475)
T TIGR00924 169 GYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVP-DPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVT 247 (475)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHcccccccCCCCC-CCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 899999988765554443333332 222100 00000100000000 000000000000000
Q ss_pred ---HHHhhhhhhchhhhhhhhccccchhHHHHHHHHHHHHHhhchHHHHHHHHhhhcc-cCCCC----CCcchhHHHHHH
Q psy15227 228 ---MDKTQEDLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPK-LDNAY----FGPDQCILVFMI 299 (515)
Q Consensus 228 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~----~~~~~~~~~~~~ 299 (515)
.....+...++ +..+.-++ +. .. +..+++........+.-.....+.+.++ .+.+. ...+.......+
T Consensus 248 ~~~~~~~~~~~~~~-~~~~~~~~-~~-~~-~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~ 323 (475)
T TIGR00924 248 LAVIIFFFRLAFKP-RLDAVARN-KM-YA-YIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPF 323 (475)
T ss_pred HHHHHHHHHHHHhc-cCCHHHHh-HH-HH-HHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHH
Confidence 00000000000 00000010 00 11 1111111111111122222223333322 22211 225567777777
Q ss_pred HHHHHHHHHHHHHhhhCC-----chhH--HHhhHHHHHHHHHHHHHHHhhC-CCCCCccHHHHHHHHHHHHHhcccchhh
Q psy15227 300 IMFLSNFLQAPLMDILGR-----KPLS--CFSAALGCLLTFSTGLFYLYQG-ELPNFQYIPYITTLLYAASYYGIGCLPN 371 (515)
Q Consensus 300 ~~~~~~~~~g~l~d~~gr-----r~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 371 (515)
..++..++..++..|.+| +... .++.++.++++..+.+.....+ ....+.+..+....+.+++.....|...
T Consensus 324 ~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~ 403 (475)
T TIGR00924 324 WVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGL 403 (475)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHH
Confidence 777777665554444443 2333 5677777777666554321111 1124556677778888888888899999
Q ss_pred hhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHhh
Q psy15227 372 ILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFNYFYLM 437 (515)
Q Consensus 372 ~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 437 (515)
.+..+..|++.||+.+|+......+|..+++.+.....+..++...+...++.+++..++.++..|
T Consensus 404 ~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (475)
T TIGR00924 404 SWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP 469 (475)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999888777777777777777777777666544444
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >KOG2615|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-24 Score=197.94 Aligned_cols=332 Identities=16% Similarity=0.117 Sum_probs=221.8
Q ss_pred chhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHhhhhhhhcccchhhh
Q psy15227 54 NKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALLCLPTWFLVVSN-KIECLYIARLFIGISKGVAYTAMPIF 132 (515)
Q Consensus 54 s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~~ 132 (515)
+..-.|.+.|.+.++..+.++.+|.++||+|||++++++++..++..++.+.+ |+..++++|++.|+..|-. ....++
T Consensus 66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl-~v~rAi 144 (451)
T KOG2615|consen 66 SVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNL-SVIRAI 144 (451)
T ss_pred cchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCch-HHHHHH
Confidence 55667999999999999999999999999999999999999999999999999 9977777799999998855 777899
Q ss_pred hhcccccccccccccccchhhhHHHHHHHHHhhHHHh------HHHHHh----hhHHHHH-HHHHhhcccCcchhhhhcC
Q psy15227 133 IGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHVSY------NSLNIA----LSILPVI-FFILFSFVPETPHFHAAKN 201 (515)
Q Consensus 133 i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~l~w------r~~f~i----~~~~~~~-~~~~~~~~pesp~~~~~~~ 201 (515)
++|.+++|+|+++++..++.+++|.++||.+++++.- +.+|.. ..+++.. .....+++|||-. .++
T Consensus 145 isdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL~---~rk 221 (451)
T KOG2615|consen 145 ISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETLP---LRK 221 (451)
T ss_pred HHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCcccc---chh
Confidence 9999999999999999999999999999999988733 122222 2222222 2334457899832 222
Q ss_pred ChhHHHHHHHhhcCCCcChHHHHHHHHHHhhhhhhchhhhhhhhccccchhHHHH--HHHHHHHHHhhchHHHHHHHHhh
Q psy15227 202 NLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGYLELLTNKSNRRAFTL--VMAASLFQRLGGITSMITYSSTL 279 (515)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 279 (515)
+.++... ..+..++.++. .+.+...-...+++++...++.. .+.+..+..+..+..+.++.+.+
T Consensus 222 ~~~~~~~-----------~~~~~~~~~~~---~~~~~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t~~~l 287 (451)
T KOG2615|consen 222 RNDEHST-----------LQEAADDRLAL---LKFARIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLENTVLFL 287 (451)
T ss_pred hcccccc-----------hhhhhhhhhhh---cchhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhhHHHh
Confidence 2211000 00000000000 00001111123344333321111 11111111111112222222222
Q ss_pred -hcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhC--CchhHHHhhHHHHHHHHHHHHHHHhhCCCCCCccHHHHHH
Q psy15227 280 -LPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILG--RKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITT 356 (515)
Q Consensus 280 -~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g--rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (515)
....|+++.+.+.+....++.+.+.+....+..+|.+ .+..+..+..++.-..+++.. ...........
T Consensus 288 ~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~--------~~~~~~l~~~s 359 (451)
T KOG2615|consen 288 THGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSL--------ARTPVVLYLGS 359 (451)
T ss_pred hcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhc--------cccchhhhHHH
Confidence 1446889899999998888888888887777777766 444444444444444444443 44455566666
Q ss_pred HHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q psy15227 357 LLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKS 411 (515)
Q Consensus 357 ~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~ 411 (515)
.+..+......+....++....|++.||+++|+....+.++-++||.+.|.+...
T Consensus 360 ~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~W 414 (451)
T KOG2615|consen 360 TLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSW 414 (451)
T ss_pred HHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEE
Confidence 6676666556666678889999999999999999999999999999999887653
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-23 Score=211.42 Aligned_cols=409 Identities=9% Similarity=0.051 Sum_probs=265.4
Q ss_pred chhHHHHHHHHHHHHHHhhhhhccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhh
Q psy15227 7 SYVYQIIATNTASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRK 86 (515)
Q Consensus 7 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr 86 (515)
+..++|..+..........+...++. ...|.+.+ ++| +|..+++++.+.. .....++++.|+++||+|||
T Consensus 22 ~e~~Rw~~lva~~~~~~~~g~~y~fs-v~s~~L~~---~lg-----ls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R 91 (591)
T PTZ00207 22 NEPRRFALLVLGAFCSICTSFMYAFN-LISGAMQA---RYN-----LTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPR 91 (591)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH---HhC-----cCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcH
Confidence 34667777766666655555544333 34455544 588 9999999998874 44556788899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhh-------hhhHHHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhhhHHHHH
Q psy15227 87 TTLLLNALLCLPTWFLVVSN-------KIECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLA 159 (515)
Q Consensus 87 ~~l~~~~~l~~i~~~~~~~~-------~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~ 159 (515)
+++.++.+++.+++++++++ +++.+++.|++.|+|.+...+.....+.+|+| ++||++.++...+.++|..+
T Consensus 92 ~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI 170 (591)
T PTZ00207 92 PIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAI 170 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999886 68999999999999999999999999999997 56999999999999999975
Q ss_pred -HHHHhhHH--HhHHHHHhhhHHHHHHHHHhh-c--ccCcchhhhhcCChhHHHHHHHhhcCCC----------------
Q psy15227 160 -ILLIGNHV--SYNSLNIALSILPVIFFILFS-F--VPETPHFHAAKNNLKKTEKSLKWYRGNK---------------- 217 (515)
Q Consensus 160 -~~~l~~~l--~wr~~f~i~~~~~~~~~~~~~-~--~pesp~~~~~~~~~~~~~~~~~~~~~~~---------------- 217 (515)
+++....+ +|+..|++.++++++..++.. + .|++|++..++++.++.++..++.++..
T Consensus 171 ~~~l~~~l~~~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~ 250 (591)
T PTZ00207 171 LGSIQLAFFSDNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFV 250 (591)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHH
Confidence 44444444 899888888888876655543 3 3555555434433333333211111100
Q ss_pred ----------------------cChHH-----HH------H----------------H----HH---H---H--hhh---
Q psy15227 218 ----------------------KDVME-----EM------N----------------S----IM---D---K--TQE--- 233 (515)
Q Consensus 218 ----------------------~~~~~-----~~------~----------------~----~~---~---~--~~~--- 233 (515)
+.... .. . + .. + + .++
T Consensus 251 i~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (591)
T PTZ00207 251 ILIILIVFLPLQGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKV 330 (591)
T ss_pred HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCcCCCcccccccccccccccccccccc
Confidence 00000 00 0 0 00 0 0 000
Q ss_pred -----h---hhchhhhhhhhccccchhHHHHHHHHHHHHHhhchHHHHHHHHhhhccc-CCCCCC--cchhHHHHHHHHH
Q psy15227 234 -----D---LKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKL-DNAYFG--PDQCILVFMIIMF 302 (515)
Q Consensus 234 -----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~--~~~~~~~~~~~~~ 302 (515)
+ .+...++.+.+++. -++.++...++...........+.++.+.+ |.+..+ ...+.++.++++.
T Consensus 331 ~~~~~~~~~P~~~~t~~q~l~~~-----d~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~ 405 (591)
T PTZ00207 331 VETDVDYIAPQFQETFIEGLKTA-----RLWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSA 405 (591)
T ss_pred ccccccCCCCCCcchHHHHHhch-----hHHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHH
Confidence 0 00001233333322 233344444444444455556667777777 663223 2237889999999
Q ss_pred HHHHHHHHHHhhhCCc--------hhHHHhhHHHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhh
Q psy15227 303 LSNFLQAPLMDILGRK--------PLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILV 374 (515)
Q Consensus 303 ~~~~~~g~l~d~~grr--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 374 (515)
+|++..|++.....+| +..+....++.++.+++.+ ..+....++..++.+++++...++....+
T Consensus 406 ~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~~~~~~lll~~--------~~p~~~L~~~~~lvg~~~G~~~~~~~~i~ 477 (591)
T PTZ00207 406 VGRLCMSYFEIWSQKRRAEDRVPITIALFIPSVCIITMLTLFL--------TLPKAALPLPYFIAAFANGFMAATIALVT 477 (591)
T ss_pred hhHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHH--------HCCccHhHHHHHHHHHHhhHhHHHHHHHH
Confidence 9999999987322222 2222222224444444444 22224667777888888888888888999
Q ss_pred cccccchhhhhhhhHHHHHHHHHHHHH-HHHHHHHHhhhc-------------hhHHHHHHHHHHHHHHHHHHHHhhccc
Q psy15227 375 SELFPINVRCQASSCASVALAFGSFIT-TKFHILITKSLG-------------QHVIFFIYSSVHFCSVVFNYFYLMETK 440 (515)
Q Consensus 375 ~~~~p~~~r~~~~g~~~~~~~lg~~~~-~~~~g~l~~~~g-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (515)
+|+|. ++-|+-.-+.....-+|+.+- -.++|.++|+.. ++.+|++.+++++.+.+.......+++
T Consensus 478 selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R~r 556 (591)
T PTZ00207 478 RTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQYR 556 (591)
T ss_pred HHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhheeeehH
Confidence 99999 777888777777777777776 557788887532 457899999999988887755444443
|
|
| >KOG3764|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-26 Score=211.39 Aligned_cols=384 Identities=14% Similarity=0.085 Sum_probs=270.3
Q ss_pred chhHHHHHHHHHHHHHHhhhhhccchhhhhhcccCCCCc--------c--------------------------------
Q psy15227 7 SYVYQIIATNTASISLLIAGCWIAWPSVMIKRLTDENPD--------L-------------------------------- 46 (515)
Q Consensus 7 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~--------~-------------------------------- 46 (515)
.++.+..++...+++.+.+++....+.|.+|....+.+. +
T Consensus 15 ~r~~r~lilviv~ialllDnmL~~vivPiiP~~L~d~~~~p~~~~~~~~is~~~~~~~~~~~~~~~~~~~~~t~a~~~~~ 94 (464)
T KOG3764|consen 15 QRRSRPLILVIVSIALLLDNMLYTVIVPIIPGYLYDIQAEPTIIQPFFPISTAPIPPGSMSSFSSLNISTESTNASAGKS 94 (464)
T ss_pred cccccceEEEEEehhhhccCccceeeeccCccHHHHhccCCccCccccccccCCCCCccccceecccCCccccccccccC
Confidence 344555667777888888888888888888754332110 0
Q ss_pred --cccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHhhhhhh
Q psy15227 47 --ENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALLCLPTWFLVVSN-KIECLYIARLFIGISKG 123 (515)
Q Consensus 47 --~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~-~~~~l~~~r~l~G~~~g 123 (515)
.+...+-+++++|++.++..+.+.+.+++.|.+.||+|+|-.+++|++.+..++++.++. ++++++++|.+||+|.+
T Consensus 95 ~~~~~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA 174 (464)
T KOG3764|consen 95 PAEAISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSA 174 (464)
T ss_pred chhccCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHH
Confidence 011223677899999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred hcccchhhhhhcccccc-cccccccccchhhhHHHHHHHHHhhHH----HhHHHHHhhhHHHHHHHHHhhcccCcchhhh
Q psy15227 124 VAYTAMPIFIGEISEHN-IRGALGSIPSGFQMVGTLAILLIGNHV----SYNSLNIALSILPVIFFILFSFVPETPHFHA 198 (515)
Q Consensus 124 ~~~~~~~~~i~e~~~~~-~r~~~~~~~~~~~~lG~~~~~~l~~~l----~wr~~f~i~~~~~~~~~~~~~~~pesp~~~~ 198 (515)
...+++.++++|.+|++ +|++++|+.-.+.++|.++||.+++.+ |.+.+|++.+++.++...+.+++-|..+.
T Consensus 175 ~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~-- 252 (464)
T KOG3764|consen 175 FADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEM-- 252 (464)
T ss_pred HHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCcccc--
Confidence 99999999999999976 489999999999999999999999776 99999999999999888887765332110
Q ss_pred hcCChhHHHHHHHhhcCCCcChHHHHHHHHHHhhhhhhchhhhhhhhccccchhHHHHHHHHHHHHHhhchHHHHHHHHh
Q psy15227 199 AKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSST 278 (515)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (515)
.+++..+..++++++++|..+............ .....--.+.
T Consensus 253 --------------------------------~~~~~~~~~~~~~Ll~dP~I~~~agai~~~n~~-----lafLePtlsl 295 (464)
T KOG3764|consen 253 --------------------------------DPDSTEQGTPMWSLLMDPYILLIAGAITFSNSS-----LAFLEPTLSL 295 (464)
T ss_pred --------------------------------CccccccCccHHHHHhCchHhhhhcchhhccch-----HHHhCcccHH
Confidence 000122344577777766433221111111111 1111111222
Q ss_pred -hhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhH--HHhhHHHHHHHHHHHHHHHhhCCCCCCccHHHHH
Q psy15227 279 -LLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLS--CFSAALGCLLTFSTGLFYLYQGELPNFQYIPYIT 355 (515)
Q Consensus 279 -~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (515)
..++...+..+.+..+....+...++..+.|.+.||++.-+.+ ..+.+..+++.....+... ....|.....
T Consensus 296 wm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~-----~~~L~vp~~~ 370 (464)
T KOG3764|consen 296 WMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATS-----IAQLWVPNFG 370 (464)
T ss_pred HHHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhh-----HHHHhhhhHH
Confidence 3344454445888899999999999999999999999943333 3333333333333333111 1112222222
Q ss_pred HHHHHHHH-hcccchhhhhhcccccch---hhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHH
Q psy15227 356 TLLYAASY-YGIGCLPNILVSELFPIN---VRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSVVF 431 (515)
Q Consensus 356 ~~l~~~~~-~~~~~~~~~~~~~~~p~~---~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 431 (515)
..+.+... ....|.. .+..|.-..+ ..|...++......+|.++||.+.|.+.+..|+.+...+.+...++..-+
T Consensus 371 l~~~i~~~dasl~P~l-~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyapv 449 (464)
T KOG3764|consen 371 LGFGIGLADASLIPTL-GYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAPV 449 (464)
T ss_pred HHHHHHHHHHHHhhhh-HHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHHHH
Confidence 22222222 4444554 3333332333 56889999999999999999999999999999999999999988888776
Q ss_pred HHHH
Q psy15227 432 NYFY 435 (515)
Q Consensus 432 ~~~~ 435 (515)
+.++
T Consensus 450 l~ll 453 (464)
T KOG3764|consen 450 LLLL 453 (464)
T ss_pred HHHH
Confidence 6443
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.4e-25 Score=213.42 Aligned_cols=325 Identities=12% Similarity=0.011 Sum_probs=222.5
Q ss_pred ccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhh-----hhhHH-HHHHHHHHHHHHHH
Q psy15227 29 IAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKI-----GRKTT-LLLNALLCLPTWFL 102 (515)
Q Consensus 29 ~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~-----Grr~~-l~~~~~l~~i~~~~ 102 (515)
.+..++.+|.+.+ ++| +|.+++|+..+. .+...+ .+++|+++||+ ||||. ++.+.++.+++...
T Consensus 4 ~~~~~~~~~~~~~---~~g-----~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~ 73 (356)
T TIGR00901 4 LGLVGNTLPYWLR---SKN-----VSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLI 73 (356)
T ss_pred chhHHhHHHHHHH---HcC-----CCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHH
Confidence 3456677777765 478 999999999765 455555 89999999998 89887 46677777777666
Q ss_pred HHhh----hhhHHHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhhhHHHHHHHHHhhHH----H------
Q psy15227 103 VVSN----KIECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHV----S------ 168 (515)
Q Consensus 103 ~~~~----~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~l----~------ 168 (515)
.++. +.+.+....++.|++.+...++..+++.|++|+|+|+++.++...+..+|.++++.++..+ +
T Consensus 74 l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~ 153 (356)
T TIGR00901 74 LSFLVPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLI 153 (356)
T ss_pred HHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc
Confidence 6665 5566777788889998888999999999999999999999999999999999998888544 6
Q ss_pred --hHHHHHhhhHHHHHHHHHhhc-ccCcchhhhhcCChhHHHHHHHhhcCCCcChHHHHHHHHHHhhhhhhchhhhhhhh
Q psy15227 169 --YNSLNIALSILPVIFFILFSF-VPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGYLELL 245 (515)
Q Consensus 169 --wr~~f~i~~~~~~~~~~~~~~-~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (515)
||..|++.++..++..+..++ .||+++. +++.+ ++ +++.+.++++++
T Consensus 154 ~~wr~~f~i~ai~~l~~~~~~~~~~~e~~~~---~~~~~-----------------~~----------~~~~~~~~~~~~ 203 (356)
T TIGR00901 154 TLWGYIFFWTALLILPGLLVTLFLAKEPQED---ASVPK-----------------PL----------TQAVLKPIREFF 203 (356)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhccCCCcc---cccch-----------------hH----------HHHHHHHHHHHH
Confidence 999999999887776655554 5664321 00000 00 000112344555
Q ss_pred ccccchhHHHHHHHHHHHHHhhchHHHHHHHHhhhcccCCCCCCcchhHHHHH-HHHHHHHHHHHHHHhhhCCchhHHHh
Q psy15227 246 TNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFM-IIMFLSNFLQAPLMDILGRKPLSCFS 324 (515)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~grr~~~~~~ 324 (515)
+++..+. ............ ........+.|.++++.|++..+.+......+ +..+++.++++++.||+|||+.+..+
T Consensus 204 ~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~ 281 (356)
T TIGR00901 204 QRKNMIQ-ALLLLLLIVLYK-LGDSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLF 281 (356)
T ss_pred HhcCchH-HHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 5543222 222222222222 23345566777777778887677676666555 57789999999999999999988877
Q ss_pred hHHHHHHHHHHHHHHHhhCC---CCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHH
Q psy15227 325 AALGCLLTFSTGLFYLYQGE---LPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALA 395 (515)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~ 395 (515)
.++.++....+.+.....+. ..+..+......++.+++.+...+...++..|.+|+++||+.+|+.+...+
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 282 GIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 77766655544332110000 001223344444455666667778888999999999999999999877654
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.6e-24 Score=215.47 Aligned_cols=323 Identities=14% Similarity=0.065 Sum_probs=222.4
Q ss_pred cccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhh----hhhh-HHHHHHHHHHHHHHHHHHhh-h------hhHHH
Q psy15227 45 DLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEK----IGRK-TTLLLNALLCLPTWFLVVSN-K------IECLY 112 (515)
Q Consensus 45 ~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr----~Grr-~~l~~~~~l~~i~~~~~~~~-~------~~~l~ 112 (515)
+++ +++.++|++.++..+..++..|+.|+++|| +||| +.++.+....+++.+++... + ...++
T Consensus 29 ~~g-----~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 103 (437)
T TIGR00792 29 VLG-----LSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAY 103 (437)
T ss_pred ccC-----CCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHH
Confidence 477 999999999999999999999999999998 6874 46777888888888877665 3 45677
Q ss_pred HHHHHhhhhhhhcccchhhhhhccc-ccccccccccccchhhhHHHHHHHHHhh-----------HHHhHHHHHhhhHHH
Q psy15227 113 IARLFIGISKGVAYTAMPIFIGEIS-EHNIRGALGSIPSGFQMVGTLAILLIGN-----------HVSYNSLNIALSILP 180 (515)
Q Consensus 113 ~~r~l~G~~~g~~~~~~~~~i~e~~-~~~~r~~~~~~~~~~~~lG~~~~~~l~~-----------~l~wr~~f~i~~~~~ 180 (515)
+.+++.+++.+...+...++..|.. +++||++..++.+.+..+|..+++.+.. ..+||+.+.+.++++
T Consensus 104 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~ 183 (437)
T TIGR00792 104 ITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIG 183 (437)
T ss_pred HHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHH
Confidence 7889999998888888888889987 4688999999988888887666544321 237999999988888
Q ss_pred HHHHHHhh-cccCcchhhhhcCChhHHHHHHHhhcCCCcChHHHHHHHHHHhhhhhhchhhhhhhhccccchhHHHHHHH
Q psy15227 181 VIFFILFS-FVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGYLELLTNKSNRRAFTLVMA 259 (515)
Q Consensus 181 ~~~~~~~~-~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (515)
++..+..+ ..||.++.. +.++ +++.+.+..+++++++|.++......+.
T Consensus 184 ~~~~~~~~~~~~e~~~~~----~~~~--------------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 233 (437)
T TIGR00792 184 VVSLIICFFGTKERYSEI----PKNI--------------------------EKKLSLKQIFKALFKNDQLLILCLAYLF 233 (437)
T ss_pred HHHHHHHHcCCEecCCCC----Cccc--------------------------ccCCCHHHHHHHHhCCHHHHHHHHHHHH
Confidence 77665543 467754100 0000 0000112234556665543332221111
Q ss_pred HHHHHHhhchHHHHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHH
Q psy15227 260 ASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFY 339 (515)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~ 339 (515)
.. ........+.+++.+....+....+.......+..+++.++.++++||+|+|+.+..+..+.+++.+.+.+.
T Consensus 234 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~- 307 (437)
T TIGR00792 234 YN-----LAFNIKNGVQVYYFTYVLGDPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFA- 307 (437)
T ss_pred HH-----HHHHHHcchhheeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc-
Confidence 11 112233334444444321123445556666788899999999999999999999888877777666554431
Q ss_pred HhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhccccc-------chhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q psy15227 340 LYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFP-------INVRCQASSCASVALAFGSFITTKFHILITKSL 412 (515)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p-------~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~ 412 (515)
.++.+...+...+.+++.+...+..+++.+|..| ++.+|.+.|+.+.+..+|..+++.+.|.+.+..
T Consensus 308 ------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~ 381 (437)
T TIGR00792 308 ------GSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGII 381 (437)
T ss_pred ------chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 1223344444555566665666777788888765 456799999999999999999999999999877
Q ss_pred ch
Q psy15227 413 GQ 414 (515)
Q Consensus 413 g~ 414 (515)
|+
T Consensus 382 G~ 383 (437)
T TIGR00792 382 GY 383 (437)
T ss_pred CC
Confidence 65
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.93 E-value=9e-24 Score=202.42 Aligned_cols=365 Identities=11% Similarity=0.069 Sum_probs=242.0
Q ss_pred HHHHHHhhhhhccchhhhhhcccCCCCcccccccccchhh-HHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHHHHHHHHH
Q psy15227 18 ASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQ-LSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALLC 96 (515)
Q Consensus 18 ~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~-~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~~~~~l~ 96 (515)
+|+..|+..+- ...+.+.|.+.+ ++| +|+.| .|.+.++++.++++++++.|+++||+|.|+++.++.+.+
T Consensus 32 lC~fGF~~e~R-~n~s~a~p~L~~---elg-----lT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~W 102 (511)
T TIGR00806 32 LCFYGFMAQFR-PGESFITPYLLT---VLN-----FTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSF 102 (511)
T ss_pred HHHHHHHHHhh-chHHHHHHHHHH---HcC-----CCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 44444444433 333445566655 588 99999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh-hhhHHHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhhhHHHHHHHHHhhHH---HhHHH
Q psy15227 97 LPTWFLVVSN-KIECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHV---SYNSL 172 (515)
Q Consensus 97 ~i~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~l---~wr~~ 172 (515)
++.+++.+++ +++.+.+.|++.|++.|... +...++..|+|+++|+++.++...+..+|.++++++++.+ |||+-
T Consensus 103 sl~t~L~~fa~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr~y 181 (511)
T TIGR00806 103 VCVWLLLLLGTSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVTLGWISY 181 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhH
Confidence 9999999999 99999999999999999999 9999999999999999999999999999999999888766 78875
Q ss_pred HHh---hhHHHHHHHHHhhcccCcchhhhhcCChhHHHHHHHhhcCCCcChHHHHHH-HHH-Hhhhhhhchhhhhhhhcc
Q psy15227 173 NIA---LSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNS-IMD-KTQEDLKSKTGYLELLTN 247 (515)
Q Consensus 173 f~i---~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~ 247 (515)
..+ ......+.++..+++|..++-+.-+++.+.............++...+..+ .+. ....-..-...+++..++
T Consensus 182 ~~Ln~Isl~s~~~a~~~a~~LP~~~~sl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~n 261 (511)
T TIGR00806 182 STLNIISLVFMTFSVFLALFLKRPKRSLFFNRLEDVRGALPCELDQMVPGPGGKLEDYLGTCRDSFLVRMLSELVTIYRN 261 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCchhhhhccccccccccccccccCCCCCccccchhhhhhhhHHHHHHHHHHHHHhcC
Confidence 443 333334555666778866654333322111000000000000000000000 000 000000011223333444
Q ss_pred ccchhHHHHHHHHHHHHHhhchHHHHHHHHhhhcccCCC-CCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHH--Hh
Q psy15227 248 KSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNA-YFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSC--FS 324 (515)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~--~~ 324 (515)
+. ++-..++.....+++.-...|...+.++..-+ ..-.|..-.+..+.+.+..+..|++-.+..+-..+. +.
T Consensus 262 ~~-----vl~WSlWwa~a~~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~ 336 (511)
T TIGR00806 262 PQ-----LLLWSLWWVFNSAGYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVV 336 (511)
T ss_pred cc-----hhhhhHHHHHHhhHHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHH
Confidence 33 23334444555556677777877776665332 124455666677778888888998855543322222 22
Q ss_pred hHHHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHH
Q psy15227 325 AALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKF 404 (515)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~ 404 (515)
.++.+..++++.. .++.|..++..+++...+....++...-+++....+.-|..+|+.++...+-+.+...+
T Consensus 337 s~~~~gll~~m~~--------t~~Iw~~Y~~yvlf~~~y~flitia~~~iA~~L~~~~~aLvFGiNtfvAl~LQtilT~i 408 (511)
T TIGR00806 337 SAIQAGLVFWMSQ--------SHDIWVLYVTYVLFRGIYQFLVPIATFQIASSLSKELCALVFGINTFVATALKTIITAV 408 (511)
T ss_pred HHHHHHHhhhhhc--------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceEEEEecHHHHHHHHHHheEEE
Confidence 2333333333333 67889999999999999866667776777777777777999999988877777766654
Q ss_pred H
Q psy15227 405 H 405 (515)
Q Consensus 405 ~ 405 (515)
.
T Consensus 409 V 409 (511)
T TIGR00806 409 V 409 (511)
T ss_pred E
Confidence 4
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.3e-23 Score=203.99 Aligned_cols=373 Identities=14% Similarity=0.121 Sum_probs=231.1
Q ss_pred HHHHHHHhhhhhccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHHHHHHHHH
Q psy15227 17 TASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALLC 96 (515)
Q Consensus 17 ~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~~~~~l~ 96 (515)
..++......+.....+..++.+.. |++ +..+..|+.+.+.++.+++.++.|+++|.||||..++.+.++.
T Consensus 48 ~~~~~~~~~~~~~~~~a~~l~~I~~---diG------~~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~ 118 (599)
T PF06609_consen 48 AFSLAVIAAYFVLVLPASILPYINA---DIG------GSDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLG 118 (599)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHH---hcC------CCccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHH
Confidence 3444444444555556667776654 577 4578889999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh-hhhHHHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhhhHHHHHHHHHhhHH----HhHH
Q psy15227 97 LPTWFLVVSN-KIECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHV----SYNS 171 (515)
Q Consensus 97 ~i~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~l----~wr~ 171 (515)
.+|++.++.+ |...++++..+.|+|.|.... ....++|..|.|.|+...++...........++.++..+ +|||
T Consensus 119 vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw 197 (599)
T PF06609_consen 119 VVGSIVCATAQNMNTFIAGMVLYGVGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRW 197 (599)
T ss_pred HhHHHHhhcCCcHHHHHHHHHHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcch
Confidence 9999999999 999999999999999877754 466689999999998877666655555444566666554 8999
Q ss_pred HHHhhhHHHHHHHHHhhcccCcchhhhhcCC---hhHHHHHHHhh------------------cCCC-c--ChHHHHHHH
Q psy15227 172 LNIALSILPVIFFILFSFVPETPHFHAAKNN---LKKTEKSLKWY------------------RGNK-K--DVMEEMNSI 227 (515)
Q Consensus 172 ~f~i~~~~~~~~~~~~~~~pesp~~~~~~~~---~~~~~~~~~~~------------------~~~~-~--~~~~~~~~~ 227 (515)
.|++.++...+.+++.++.-.+|++...+++ ..+..+.++.+ .+.. . +........
T Consensus 198 ~~~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~l 277 (599)
T PF06609_consen 198 IFYIFIIWSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPL 277 (599)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhH
Confidence 9999988877666554332222322222221 11212222211 1110 0 000000000
Q ss_pred H---------HHhhhh--hhchhhhhhhhccccchhHHHHHHHHHHHHHhhchHHHHHHHHhh-hcccCCCC---CCcch
Q psy15227 228 M---------DKTQED--LKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTL-LPKLDNAY---FGPDQ 292 (515)
Q Consensus 228 ~---------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~---~~~~~ 292 (515)
- .-.|.. .+++.-..+++++++.. ...+.+.+...+. ++....+.|.. ..-.+-++ ...+.
T Consensus 278 viG~~~Lv~F~~wE~~~~~~~Pl~P~~Lf~~~r~~---~~~lvi~fi~G~~-~~s~~~l~p~~~~~vf~~d~~~~~~~~~ 353 (599)
T PF06609_consen 278 VIGFVLLVAFVVWEWFGAPKDPLFPHRLFKDRRGF---AALLVISFISGMN-FFSVNILWPQQVVNVFGSDPISITEIGW 353 (599)
T ss_pred HHHHHHHHHHHHhhhhccCCCCcCCHHHhccchHH---HHHHHHHHHHHHH-HHHHHHHHHHHHhhhccCCCcccceeeh
Confidence 0 000111 11122234566643222 2212222222111 23333333433 32233332 24567
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhCCchh-HHHhhHHHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhcccchhh
Q psy15227 293 CILVFMIIMFLSNFLQAPLMDILGRKPL-SCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPN 371 (515)
Q Consensus 293 ~~~~~~~~~~~~~~~~g~l~d~~grr~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 371 (515)
.....+++..+|.++.+.+..+++|-|. ++.+.+++.+++..+.... .++....+....+.+++.+.......
T Consensus 354 ~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~------~~n~~~~i~~~~l~g~giG~~~~~~~ 427 (599)
T PF06609_consen 354 ISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVR------PDNKNAAIAFLVLAGFGIGGILVPAI 427 (599)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHcc------CCCcchHHHHHHHHHHhHHHHHHHHH
Confidence 7778888888999999999998887554 4455555554444333311 23333444555566666655554555
Q ss_pred hhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy15227 372 ILVSELFPINVRCQASSCASVALAFGSFITTKFHILIT 409 (515)
Q Consensus 372 ~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~ 409 (515)
+...-..|++.-|++.|+...++.+|+.++..+...+.
T Consensus 428 ~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~ 465 (599)
T PF06609_consen 428 VIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIF 465 (599)
T ss_pred HeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 66777789999999999999999999999988875444
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4e-23 Score=188.19 Aligned_cols=363 Identities=12% Similarity=0.078 Sum_probs=273.5
Q ss_pred HHHHHHHHHHHHhhhhhccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHHHH
Q psy15227 12 IIATNTASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLL 91 (515)
Q Consensus 12 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~~ 91 (515)
|..+..+.+..+...-..+..+|.++++.+ |+| +|.+..|+++++..+...+.+++..++++|+|.++.+..
T Consensus 11 ~~li~gIvlia~NLR~~itsvgPLL~~Ir~---~~g-----ls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~ 82 (395)
T COG2807 11 LLLLAGIVLIAFNLRPAITSVGPLLDEIRQ---DLG-----LSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFL 82 (395)
T ss_pred hHHHHHHHHHHhccchhhhhhhhhHHHHHH---Hhc-----ccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHH
Confidence 444444444445555566777888887765 689 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhhhHHHHHHHHHh----hHH
Q psy15227 92 NALLCLPTWFLVVSNKIECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIG----NHV 167 (515)
Q Consensus 92 ~~~l~~i~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~----~~l 167 (515)
++++..+|.++=...+.+.++.+-.+.|.|.+...+..+.+|-+.||++ -+..++++++..++|..+++.+. ...
T Consensus 83 ~Llli~~G~~iR~~~~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-~~~mtglYs~sl~~~aaLaa~lavpla~~~ 161 (395)
T COG2807 83 ALLLIAAGILIRSLGGLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-VGLMTGLYSTSLGAGAALAAALAVPLAQHS 161 (395)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-hhhHHhHHHHHHHHHHHHHhhhhhHHHHhh
Confidence 9999999999887777888999999999999999999999999999876 79999999999998877776655 344
Q ss_pred -HhHHHHHhhhHHHHHHHHHhhcccCcchhhhhcCChhHHHHHHHhhcCCCcChHHHHHHHHHHhhhhhhchhhhhhhhc
Q psy15227 168 -SYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGYLELLT 246 (515)
Q Consensus 168 -~wr~~f~i~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (515)
+||.....-+.++++.++.++ |...|. + ....+.+..+-..++|
T Consensus 162 ~gW~~aL~~WAl~allAl~~Wl--Pq~~r~-----~----------------------------~~~~~~~~~~~~~vw~ 206 (395)
T COG2807 162 GGWRGALGFWALLALLALLIWL--PQALRE-----Q----------------------------AASIATKLVSVRKVWR 206 (395)
T ss_pred ccHHHHHHHHHHHHHHHHHHHh--hhcccc-----c----------------------------cccccccccccccccc
Confidence 799999988888888777654 221110 0 0001111222334666
Q ss_pred cccchhHHHHHHHHHHHHHhhchHHHHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhC-CchhHHHhh
Q psy15227 247 NKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILG-RKPLSCFSA 325 (515)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g-rr~~~~~~~ 325 (515)
+|.-|. ..+++..+...++....|+|.++.+.|+++.+++...+...+..++.++....+.+|.. +|+......
T Consensus 207 ~~~aW~-----vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~ 281 (395)
T COG2807 207 SPLAWQ-----VTLFMGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLAL 281 (395)
T ss_pred CchhHH-----HHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHH
Confidence 654333 44445555556788999999999999999999999999999999999999999999754 666666666
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccc-hhhhhhhhHHHHHHHHHHHHHHHH
Q psy15227 326 ALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPI-NVRCQASSCASVALAFGSFITTKF 404 (515)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~-~~r~~~~g~~~~~~~lg~~~~~~~ 404 (515)
.++.++.+.+.+. +.+. .+...++++.+.++.+|...+.+....++ +..+.-.|+.+..+++-...+|.+
T Consensus 282 ~~~l~G~~G~~~~-------P~~~--~~lw~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l 352 (395)
T COG2807 282 LLMLVGLVGLLLA-------PGQL--PILWALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWL 352 (395)
T ss_pred HHHHHHHHHHHHh-------hhhH--HHHHHHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhh
Confidence 7777776666542 1111 22224677777777778877777766543 455666788899999999999999
Q ss_pred HHHHHhhhc-hhHHHHHHHHHHHHHHHHH
Q psy15227 405 HILITKSLG-QHVIFFIYSSVHFCSVVFN 432 (515)
Q Consensus 405 ~g~l~~~~g-~~~~~~~~~~~~~~~~~~~ 432 (515)
.|++.|..| |+.....+....++..++-
T Consensus 353 ~G~lhDa~gsw~~~~~~l~~~~i~m~i~G 381 (395)
T COG2807 353 FGFLHDATGSWSAPLVLLALATLLMLIFG 381 (395)
T ss_pred HhHHHHhcCChHHHHHHHHHHHHHHHHHH
Confidence 999999887 4445555555544444443
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-22 Score=200.84 Aligned_cols=368 Identities=9% Similarity=-0.030 Sum_probs=241.6
Q ss_pred HHHHHHHHhhhhhccchhhhhhcccCCCCcccccccccchhhHHHH--HHHHHHHhhhhhhhH-hhhhhhhhhhHHHHHH
Q psy15227 16 NTASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWM--VSLLDLGNAISPIFA-GILVEKIGRKTTLLLN 92 (515)
Q Consensus 16 ~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~--~s~~~lg~~i~~~~~-G~l~Dr~Grr~~l~~~ 92 (515)
..+...++..|...+...+.+|.+.+ +.+ .|.+++|++ .+++.+...+.+++. ++..||+||||..++.
T Consensus 4 ~~~~~ly~~~g~~~~~~~p~lp~~l~---~~g-----~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~ 75 (390)
T TIGR02718 4 ITLGLLYLSQGIPIGLAMDALPTLLR---EDG-----APLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLP 75 (390)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH---HcC-----CCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHH
Confidence 44455568889999999999998876 367 999999997 467788888888888 4579999999987665
Q ss_pred HHHH-HHHHHHHH-h--h--hhhHHHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhhhHHHHHHHHHh--
Q psy15227 93 ALLC-LPTWFLVV-S--N--KIECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIG-- 164 (515)
Q Consensus 93 ~~l~-~i~~~~~~-~--~--~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~-- 164 (515)
..+. .......+ + . ....++..-++.++..+...+...++..|..++++++...+....+..+|.++++...
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~ 155 (390)
T TIGR02718 76 MQCLVSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLV 155 (390)
T ss_pred HHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4332 22222222 2 2 2334455556667777777888888888989888888888888888888888888544
Q ss_pred --hHHHhHHHHHhhhHHHHHHHHHhhcccCcchhhhhcCChhHHHHHHHhhcCCCcChHHHHHHHHHHhhhhhhchhhhh
Q psy15227 165 --NHVSYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGYL 242 (515)
Q Consensus 165 --~~l~wr~~f~i~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (515)
+.++||..|++.+++.++..+..++++|+++. +++. ++++..+.+
T Consensus 156 l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~~~~~---~~~~------------------------------~~~~~~~~~ 202 (390)
T TIGR02718 156 LFGKFGQRPAFLLVACVPLASLVCVLWLKDRAVA---SPEA------------------------------PLARRASLF 202 (390)
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHHHHHcCCCCcC---cccc------------------------------chhhHHHHH
Confidence 44599999999998887766665555442210 0000 000112355
Q ss_pred hhhccccchhHHHHHHHHHHHHHhhchHHHHHHHHhhhcccCCCCCCcchhHHHHHH-HHHHHHHHHHHHHhhhCCchhH
Q psy15227 243 ELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMI-IMFLSNFLQAPLMDILGRKPLS 321 (515)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~grr~~~ 321 (515)
+.+|+|..+......+. ... .......+.+.++++.|+++.+.+......+. ..+++.++.|++.||+|+|+.+
T Consensus 203 ~~l~~~~~~~~~~~~~l-~~~----~~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l 277 (390)
T TIGR02718 203 RFFRRPLAWSLLALALL-SAM----TAVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTF 277 (390)
T ss_pred HHHcCcCHHHHHHHHHH-HHH----HHHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 67776654432222222 211 22344456667777789988888887777654 6677889999999999999988
Q ss_pred HHhhHHHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccc-hhhhhhhhHHHHHHHHHHHH
Q psy15227 322 CFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPI-NVRCQASSCASVALAFGSFI 400 (515)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~-~~r~~~~g~~~~~~~lg~~~ 400 (515)
..+..+.++............ .............+.++..+...+...+...+..++ +.+++.+++.+...++|..+
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~ 355 (390)
T TIGR02718 278 ILGVGLAGSLALLWFAQAAFW--LAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELI 355 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHcc--cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHH
Confidence 776665533322222111100 011111222222222223333444445555566665 78999999999999999999
Q ss_pred HHHHHHHHHhhhchhHHHHHHHHHHHHHHHH
Q psy15227 401 TTKFHILITKSLGQHVIFFIYSSVHFCSVVF 431 (515)
Q Consensus 401 ~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 431 (515)
+|.+.|.+.|..|+...|...+++.+++.+.
T Consensus 356 g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~~ 386 (390)
T TIGR02718 356 ASSIAGYLTDRFGYAGGFLSGTVLAVLAILL 386 (390)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence 9999999999999987887777666665443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.8e-21 Score=188.64 Aligned_cols=362 Identities=14% Similarity=0.106 Sum_probs=246.8
Q ss_pred hhhhccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhhh-hhHHHHHHHHHHHHHHHHH
Q psy15227 25 AGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIG-RKTTLLLNALLCLPTWFLV 103 (515)
Q Consensus 25 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~G-rr~~l~~~~~l~~i~~~~~ 103 (515)
..+..+...|.+|...+ +.+ .|..|+|.+.+...+...++++++|.++||.+ +|+++.+..++.++.....
T Consensus 14 ~f~~~G~~~p~~~~~L~---~~G-----~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~ 85 (400)
T PF03825_consen 14 YFFAYGAFLPYLPLYLE---SRG-----FSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLL 85 (400)
T ss_pred HHHHHHHHHHHHHHHHH---hCC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHH
Confidence 33444455566665544 256 89999999999999999999999999999986 5777777777777766666
Q ss_pred Hhh-hhhHHHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhhhHHHHHHHH-----HhhHHHh---HHHHH
Q psy15227 104 VSN-KIECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILL-----IGNHVSY---NSLNI 174 (515)
Q Consensus 104 ~~~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~-----l~~~l~w---r~~f~ 174 (515)
... +++.+++.-++..+......|...++..+...+ ++.-.+-.-...++|.+++.. +.+..++ ...++
T Consensus 86 ~~~~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~--~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (400)
T PF03825_consen 86 AFSSSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGD--RGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFY 163 (400)
T ss_pred HHhccHHHHHHHHHHHHHHHccHHHHHHHHHHHHccc--ccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHH
Confidence 667 999888888888888888888888888887753 344445555555555555532 2232222 24556
Q ss_pred hhhHHHHHHHHHhhcccCcchhhhhcCChhHHHHHHHhhcCCCcChHHHHHHHHHHhhhhhhchhhhhhhhccccchhHH
Q psy15227 175 ALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGYLELLTNKSNRRAF 254 (515)
Q Consensus 175 i~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (515)
+.+...++.....+.+|+.|... +. + .+.++....+..+++|+|+...-.
T Consensus 164 i~~~~~~ll~~~~l~lp~~~~~~---~~-~--------------------------~~~~~~~~~~~~~llk~~~~~~Fl 213 (400)
T PF03825_consen 164 IAAILSLLLAGFALFLPKTPPKR---SA-K--------------------------ESVKKLLGLDALKLLKNPRFLVFL 213 (400)
T ss_pred HHHHHHHHHHHHHHhCCCCcccc---cc-C--------------------------CCcccccchHHHHHhcCccHHHHH
Confidence 66655555555555678866210 00 0 000111122334678776544322
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHhhhcccC-CCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHH
Q psy15227 255 TLVMAASLFQRLGGITSMITYSSTLLPKLD-NAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTF 333 (515)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~ 333 (515)
+..+.. .........|.+.++++.| .+....+....+..+.+++.-...+++..|+|.|+++.++.+..++-..
T Consensus 214 l~~~l~-----~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~ 288 (400)
T PF03825_consen 214 LAAFLI-----GISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWL 288 (400)
T ss_pred HHHHHH-----HHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 222222 2234567778888888887 5656667777888889999999999999999999999999999999888
Q ss_pred HHHHHHHhhCCCCCCccHHHHHH----HHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHH-HHHHHHHHHHHHHHH
Q psy15227 334 STGLFYLYQGELPNFQYIPYITT----LLYAASYYGIGCLPNILVSELFPINVRCQASSCASVA-LAFGSFITTKFHILI 408 (515)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~-~~lg~~~~~~~~g~l 408 (515)
++... .++.+...... .+.+..++........++.+..|++.|++++++.+.. ..+|..++..+.|++
T Consensus 289 l~a~~-------~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l 361 (400)
T PF03825_consen 289 LYAYF-------SDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWL 361 (400)
T ss_pred HHHHh-------cCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 87762 13333333222 3467777777777789999999999999999998765 689999999999999
Q ss_pred HhhhchhH------HHHHHHHHHHHHHHHHHHHhhc
Q psy15227 409 TKSLGQHV------IFFIYSSVHFCSVVFNYFYLME 438 (515)
Q Consensus 409 ~~~~g~~~------~~~~~~~~~~~~~~~~~~~~~~ 438 (515)
.|+.|.+. .+.+.+++.++..++..++.|+
T Consensus 362 ~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~ 397 (400)
T PF03825_consen 362 YDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKP 397 (400)
T ss_pred HHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 99988654 3334444444444444344343
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.3e-21 Score=189.38 Aligned_cols=365 Identities=12% Similarity=0.070 Sum_probs=238.3
Q ss_pred cchhhHHHHHHHHHHHhhhhhhhHhhhhh----hhhhhHHHHHH-HHHHHHHHHHHHhh-hhh-----------------
Q psy15227 53 LNKYQLSWMVSLLDLGNAISPIFAGILVE----KIGRKTTLLLN-ALLCLPTWFLVVSN-KIE----------------- 109 (515)
Q Consensus 53 ~s~~~~~~~~s~~~lg~~i~~~~~G~l~D----r~Grr~~l~~~-~~l~~i~~~~~~~~-~~~----------------- 109 (515)
.+..+.+++..+..+...+.+++.|+++| |+||||.++.+ .+...++.++.+++ +.+
T Consensus 36 ~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~ 115 (477)
T TIGR01301 36 IPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAII 115 (477)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHHH
Confidence 99999999999999999999999999999 59999998875 66666666777776 543
Q ss_pred HHHHHHHHhhhhhhhcccchhhhhhcccccccc--cccccccchhhhHHHHHHHHHhhHH-------------------H
Q psy15227 110 CLYIARLFIGISKGVAYTAMPIFIGEISEHNIR--GALGSIPSGFQMVGTLAILLIGNHV-------------------S 168 (515)
Q Consensus 110 ~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r--~~~~~~~~~~~~lG~~~~~~l~~~l-------------------~ 168 (515)
.++++-.+..++.....++..+++.|.+|+++| +.+.++.+.+.++|.++++.+++.. +
T Consensus 116 ~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~ 195 (477)
T TIGR01301 116 VFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCAN 195 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccch
Confidence 223333344557777888889999999998865 5799999999999999999887653 4
Q ss_pred hHHHHHhhhHHHHHHHHHhh-cccCcchhhhhcCChhHHHHHHHhhcCCCcChHHHHHHHHHHhhhhhhchhhhhhhhcc
Q psy15227 169 YNSLNIALSILPVIFFILFS-FVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGYLELLTN 247 (515)
Q Consensus 169 wr~~f~i~~~~~~~~~~~~~-~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (515)
.|..|++.++..++..+... ..+|.|... .++.++ + +.+.. ++......++++++.
T Consensus 196 ~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~--~~~~~~--~---~~~~~----------------~~~~~~~~~~~i~~~ 252 (477)
T TIGR01301 196 LKSCFLIDIILLAILTYIALSAVKENPLIG--SDDFIN--S---EAAPP----------------SKHGEEAFFGELFGA 252 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHeeeeeccCCCc--cccchh--h---hcccc----------------cccchhhhHHHHHHH
Confidence 57788888777776665554 578865311 110000 0 00000 000001122232222
Q ss_pred ccchhHHHHHHHHHHHHHhhchHHHHHHHHhhhccc--CCCCC-C---------cchhHHHHHHHHHHHHHHHHHHHhhh
Q psy15227 248 KSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKL--DNAYF-G---------PDQCILVFMIIMFLSNFLQAPLMDIL 315 (515)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~-~---------~~~~~~~~~~~~~~~~~~~g~l~d~~ 315 (515)
-+..++.+...+...++.+.+...+..|.+.+..+. +.++. . ........++...+.+++..++.+|+
T Consensus 253 ~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~ 332 (477)
T TIGR01301 253 FKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGW 332 (477)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111112222222222333334555666666555431 21111 1 11233445555567777788899999
Q ss_pred CC-chhHHHhhHHHHHHHHHHHHHHHhhCC-------------CCCCccHHHHHHHHHHHHHhcccchhhhhhcccccc-
Q psy15227 316 GR-KPLSCFSAALGCLLTFSTGLFYLYQGE-------------LPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPI- 380 (515)
Q Consensus 316 gr-r~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~- 380 (515)
|+ |+....+.++.++++....+.....++ .....+..++...+.|+.+.....+.++++++..|+
T Consensus 333 g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~ 412 (477)
T TIGR01301 333 GAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNL 412 (477)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHcccc
Confidence 85 677788877887777776543321100 000025566677778888888889999999999995
Q ss_pred -hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc--hhHHHHHHHHHHHHHHHHHHHHhhccc
Q psy15227 381 -NVRCQASSCASVALAFGSFITTKFHILITKSLG--QHVIFFIYSSVHFCSVVFNYFYLMETK 440 (515)
Q Consensus 381 -~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (515)
+..|..+|+.|.+..+.+.+.....|.+.+..| ....+.+-++.++++++++.+.+|+++
T Consensus 413 ~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~ 475 (477)
T TIGR01301 413 GAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPR 475 (477)
T ss_pred CCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 455999999999999999999998888776665 335667777778888888877777654
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.7e-21 Score=193.08 Aligned_cols=404 Identities=11% Similarity=-0.002 Sum_probs=234.7
Q ss_pred HHHHHHhhhhhccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhh-hhhhHHHHHHHHHH
Q psy15227 18 ASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEK-IGRKTTLLLNALLC 96 (515)
Q Consensus 18 ~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr-~Grr~~l~~~~~l~ 96 (515)
+++..+...+........++.+..+ ++| +++.+.+++.+.+........+++|+++|| +|||+++.++.++.
T Consensus 26 ~~~~~~~~~~~~y~~~~~l~~yl~~--~lg-----~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~ 98 (500)
T PRK09584 26 IFSIELWERFGYYGLQGIMAVYLVK--QLG-----MSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVL 98 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HcC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 3344444455444444444433221 578 999999998888877777777899999999 59999999999999
Q ss_pred HHHHHHHHhh--hhhHHHHHHHHhhhhhhhcccchhhhhhccccccc--ccccccccchhhhHHHHHHHHHhhHH----H
Q psy15227 97 LPTWFLVVSN--KIECLYIARLFIGISKGVAYTAMPIFIGEISEHNI--RGALGSIPSGFQMVGTLAILLIGNHV----S 168 (515)
Q Consensus 97 ~i~~~~~~~~--~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~--r~~~~~~~~~~~~lG~~~~~~l~~~l----~ 168 (515)
.++..+++++ +.+.+.++|+++|+|.|...+...+++.|++|+++ |..+.++++.+.++|..++|.+++++ |
T Consensus 99 ~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g 178 (500)
T PRK09584 99 AIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYG 178 (500)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999887 56677788999999999999999999999998654 45678888899999999998888766 8
Q ss_pred hHHHHHhhhHHHHHHHHHhh----cccCcchhhhhcCChhHHHHHH-----------HhhcCCCcChHHHHHHHHHHhhh
Q psy15227 169 YNSLNIALSILPVIFFILFS----FVPETPHFHAAKNNLKKTEKSL-----------KWYRGNKKDVMEEMNSIMDKTQE 233 (515)
Q Consensus 169 wr~~f~i~~~~~~~~~~~~~----~~pesp~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~ 233 (515)
||+.|++.++..++..+... .++|.++. ..+++.+...... ......+.+..............
T Consensus 179 ~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (500)
T PRK09584 179 WSVAFALSVVGMLITVVNFAFCQRWVKQYGSK-PDFEPINYRKLLLTIVGVVALIAIATWLLHNQEIARMALGVVALGIV 257 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhccCCCC-CCccccchhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 99999988765544433222 23332110 0000011100000 00000000000000000000000
Q ss_pred hhhchhhhhhhhc-cccchhHHHHHHHHHHHHHhhchHHHHHHHHhhhcc-----c-----CCCCCCcchhHHHHHHHHH
Q psy15227 234 DLKSKTGYLELLT-NKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPK-----L-----DNAYFGPDQCILVFMIIMF 302 (515)
Q Consensus 234 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-----g~~~~~~~~~~~~~~~~~~ 302 (515)
.....+..+ .+..+++....+...... ..++......+..+.. . |.. ...........+..+
T Consensus 258 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~-i~~~~~~s~n~i~ii 330 (500)
T PRK09584 258 ----VIFGKEAFAMKGAARRKMIVAFILMLEA--IIFFVLYSQMPTSLNFFAIRNVEHSILGIA-VEPEQYQALNPFWIM 330 (500)
T ss_pred ----HHHHHHHhhcCHHHHHHHHHHHHHHHHH--HHHHHHHHHhccHHHHHHHHhccccccceE-ECHHHHHHHhHHHHH
Confidence 000000000 001122222222111111 1112222222333221 1 111 234455566666666
Q ss_pred HHHHHHHHHHhhhC----CchhHHHhhHHHHHHHHHHHHHHHhhC-CCCCCccHHHHHHHHHHHHHhcccchhhhhhccc
Q psy15227 303 LSNFLQAPLMDILG----RKPLSCFSAALGCLLTFSTGLFYLYQG-ELPNFQYIPYITTLLYAASYYGIGCLPNILVSEL 377 (515)
Q Consensus 303 ~~~~~~g~l~d~~g----rr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 377 (515)
+..++.+++-+|.+ ..+.+.+++.+.+++++.+.......+ +...+.+.......+.+++.....|....++.+.
T Consensus 331 l~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~ 410 (500)
T PRK09584 331 IGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQL 410 (500)
T ss_pred HHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 66666655545544 445677788888888777665433211 1112234566667778888888889999999999
Q ss_pred ccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHh----------hhchhHHHHHHHHHHHHHHHHHHHHh
Q psy15227 378 FPINVRCQASSCASVALAFGSFITTKFHILITK----------SLGQHVIFFIYSSVHFCSVVFNYFYL 436 (515)
Q Consensus 378 ~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~----------~~g~~~~~~~~~~~~~~~~~~~~~~~ 436 (515)
.|++.||+++|+......+|+.++..+.+.... ..++...|...++.+++..++.+...
T Consensus 411 aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~~ 479 (500)
T PRK09584 411 VPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLLTA 479 (500)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998877777777777666643221 12355677777776665555443433
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-22 Score=209.57 Aligned_cols=298 Identities=13% Similarity=0.093 Sum_probs=210.0
Q ss_pred HHHHHHHHhhhhhccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHHHHHHHH
Q psy15227 16 NTASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALL 95 (515)
Q Consensus 16 ~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~~~~~l 95 (515)
+..++..+......++.+..++.+.+ +|+ ++..+.|++.+.+.++++++.++.|+++||+|||+++.++.++
T Consensus 36 ~~~~~~~~~~~~~~g~~~~~l~~iek---~F~-----lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll 107 (633)
T TIGR00805 36 LLLTCAQLQGLLYNGLVNSSLTTIER---RFK-----LSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAI 107 (633)
T ss_pred HHHHHHHHHHHHHHHHHHhhchhhhh---hhC-----CCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHH
Confidence 44445667777778889999998866 589 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh----------------------------------------------------hhhHHHHHHHHhhhhhh
Q psy15227 96 CLPTWFLVVSN----------------------------------------------------KIECLYIARLFIGISKG 123 (515)
Q Consensus 96 ~~i~~~~~~~~----------------------------------------------------~~~~l~~~r~l~G~~~g 123 (515)
++++++++++. .+..++++|+++|+|.+
T Consensus 108 ~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~ 187 (633)
T TIGR00805 108 MGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGAT 187 (633)
T ss_pred HHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCC
Confidence 99999988653 14467789999999999
Q ss_pred hcccchhhhhhcccccccccccccccchhhhHHHHHHHHHhhHH--------------------------HhHHHHHhhh
Q psy15227 124 VAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHV--------------------------SYNSLNIALS 177 (515)
Q Consensus 124 ~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~l--------------------------~wr~~f~i~~ 177 (515)
...+...+++.|++|+++|+++++++..+..+|..+|+.+++.+ +||..|++.+
T Consensus 188 ~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g 267 (633)
T TIGR00805 188 PIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICG 267 (633)
T ss_pred cchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998887543 2777788888
Q ss_pred HHHHHHHHHhhcccCcchhhhhcCChhHHHHHHHhhcCCCcChHHHHHHHHHHhhhhhhchhhhhhhhccccchhHHHHH
Q psy15227 178 ILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGYLELLTNKSNRRAFTLV 257 (515)
Q Consensus 178 ~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (515)
++.++..+.++++|+..+....+.+.+..++ +......++... +..+..++....+++++++|.++.
T Consensus 268 ~l~~l~~v~l~~~p~~lp~~~~~~~~~~~~~--~~~~~~~~~~~~------~~~~~~~~~~~~~~~Ll~n~~f~~----- 334 (633)
T TIGR00805 268 GVALLTSIPFFFFPKALPKEGKRVNVDVHET--EKLEKSEDKSRK------KNSDITKDFPKIIKRLLCNPIYML----- 334 (633)
T ss_pred HHHHHHHHHHHhCccccCCcccccchhhhhh--hcccccccccch------hhhhhHHHHHHHHHHHHcCcHHHH-----
Confidence 8887766666666654211000000000000 000000000000 000000111234567777764333
Q ss_pred HHHHHHHHhhchHHHHHHHHhhhcc-cCCCCCCcchhHHHHHH-HHHHHHHHHHHHHhhhCC--chhHHHhhHHHHHHHH
Q psy15227 258 MAASLFQRLGGITSMITYSSTLLPK-LDNAYFGPDQCILVFMI-IMFLSNFLQAPLMDILGR--KPLSCFSAALGCLLTF 333 (515)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~gr--r~~~~~~~~~~~~~~~ 333 (515)
..+..+........+..+.|.++++ .|+++.+++.+.....+ +.+++.+++|+++||+++ |+.+..+.+...+..+
T Consensus 335 ~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~ 414 (633)
T TIGR00805 335 VILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYL 414 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHH
Confidence 2222222333456777888988875 68887888888777665 568899999999999984 4566666666555544
Q ss_pred H
Q psy15227 334 S 334 (515)
Q Consensus 334 ~ 334 (515)
.
T Consensus 415 ~ 415 (633)
T TIGR00805 415 L 415 (633)
T ss_pred H
Confidence 4
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >KOG4686|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-21 Score=171.58 Aligned_cols=365 Identities=11% Similarity=0.055 Sum_probs=241.6
Q ss_pred cchhHHHHHHHHHHHHHHhhhhhccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhh-hh
Q psy15227 6 RSYVYQIIATNTASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEK-IG 84 (515)
Q Consensus 6 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr-~G 84 (515)
....++...+...|+..|-..+.....+....+... |.+ ++.++..++.+.|.....+-..++|++.|| +|
T Consensus 37 S~l~hr~m~lv~mc~lgfgsyfcyd~p~alq~~fk~---d~n-----i~~akftLlYsvYSwPNvVlcffgGflidr~fg 108 (459)
T KOG4686|consen 37 SALGHRFMALVFMCLLGFGSYFCYDAPGALQIDFKL---DSN-----IEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFG 108 (459)
T ss_pred hhhhhHHHHHHHHHHhcccceeecCCchhhhhhhhc---ccc-----cceeeeeeeeeeccCCCEEEeeecceeehhhhh
Confidence 345567777778888777777777777766665543 577 888899999999999999999999999997 88
Q ss_pred hhHHHHHHHHHHHHHHHHHHhh----hhhHHHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhhhHHHHHH
Q psy15227 85 RKTTLLLNALLCLPTWFLVVSN----KIECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAI 160 (515)
Q Consensus 85 rr~~l~~~~~l~~i~~~~~~~~----~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~ 160 (515)
-|..-++-+....+|.++.+.. .+|++.++||+.|+|.-...++-..+..-|+..||-+.++|+.....-+|..+-
T Consensus 109 ir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvN 188 (459)
T KOG4686|consen 109 IRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVN 188 (459)
T ss_pred hhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceee
Confidence 8777666666677777776654 899999999999999988889999999999999999999999888887776543
Q ss_pred ----HHHhhHHHhHHHHHhhhHHHHHHHHHhh---cccCcchhhhhcCC-hhHHHHHHHhhcCCCcChHHHHHHHHHHhh
Q psy15227 161 ----LLIGNHVSYNSLNIALSILPVIFFILFS---FVPETPHFHAAKNN-LKKTEKSLKWYRGNKKDVMEEMNSIMDKTQ 232 (515)
Q Consensus 161 ----~~l~~~l~wr~~f~i~~~~~~~~~~~~~---~~pesp~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (515)
|.+....+- ++-...-..+.+.+.+ ....|-.-....+- ++.+++.+++- +
T Consensus 189 f~lm~~ly~~~~~---~~~~~ghT~LG~~l~~~~~tc~~slical~lg~~D~rAerilh~e------------------~ 247 (459)
T KOG4686|consen 189 FLLMPFLYDTMGR---MFPGVGHTLLGLWLCFEVKTCKQSLICALSLGLSDDRAERILHLE------------------E 247 (459)
T ss_pred eeecHHHHHHHHH---hcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhh------------------c
Confidence 333332211 1100111111111100 00000000000000 01111111110 0
Q ss_pred hhhhchhhhhhhhccccchhHHHHHHHHHHHHHhhchHHHHHHHHhhhcc-cCCCCCCcchhHHHHHHHHHHHHHHHHHH
Q psy15227 233 EDLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPK-LDNAYFGPDQCILVFMIIMFLSNFLQAPL 311 (515)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l 311 (515)
....+..++.+........+.+...+++... ....+....|.++++ .|+++..++.+.+.......+.+++.|.+
T Consensus 248 g~~Ge~pkLtdv~~f~ppfw~~~iicv~yyv----a~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i 323 (459)
T KOG4686|consen 248 GFLGEEPKLTDVNTFYPPFWVLVIICVLYYV----AWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAI 323 (459)
T ss_pred CcccCCcccccccccCccHHHHHHHHHHHHH----HHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHh
Confidence 0000111122222111112222222222222 234455556666665 59999999999999999999999999999
Q ss_pred HhhhCCchhHHHhhHHHHHH-HHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHH
Q psy15227 312 MDILGRKPLSCFSAALGCLL-TFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCA 390 (515)
Q Consensus 312 ~d~~grr~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~ 390 (515)
+||+|++.....+..+..+. -..+.+ ..+.+++.+.+.+..+....+..+..++.+.|++..|++.|.+
T Consensus 324 ~Dk~G~n~~wv~~a~~~tl~~H~~l~F----------t~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~ 393 (459)
T KOG4686|consen 324 SDKYGFNLWWVASACILTLLGHSGLFF----------TFLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFI 393 (459)
T ss_pred HhhhcceehhHHHHHHHHHHHhhhHHh----------hhccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHH
Confidence 99999998776655444433 333332 2355667777888877666666778889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Q psy15227 391 SVALAFGSFITTKFHILITKSLG 413 (515)
Q Consensus 391 ~~~~~lg~~~~~~~~g~l~~~~g 413 (515)
....++|-.+.|.+.|.+.|+-|
T Consensus 394 qsIqNLgla~i~Iiag~i~d~~g 416 (459)
T KOG4686|consen 394 QSIQNLGLAFIPIIAGFIADGDG 416 (459)
T ss_pred HHHHhhhhhHHhhhhheeecCCC
Confidence 99999999999999999999876
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.7e-20 Score=179.39 Aligned_cols=351 Identities=15% Similarity=0.170 Sum_probs=220.9
Q ss_pred cchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHHHHHHH--HHHHHHHHH-Hh----h-hhh-HHHHHHHHhhhhhh
Q psy15227 53 LNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNAL--LCLPTWFLV-VS----N-KIE-CLYIARLFIGISKG 123 (515)
Q Consensus 53 ~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~~~~~--l~~i~~~~~-~~----~-~~~-~l~~~r~l~G~~~g 123 (515)
+|.+++|.+.++..+...+.+++.|.++||+|.||-++.... +...+.... .+ . |.+ ..+++-+..|++..
T Consensus 40 Ls~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~f~ 119 (412)
T PF01306_consen 40 LSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVFN 119 (412)
T ss_dssp --HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999997665544322 222222222 11 1 322 22233333455455
Q ss_pred hcccchhhhhhcccccccccccccccchhhhHHHHHHHHHhhHH---HhHHHHHhhhHHHHHHHHHhhcc-cCcchhhhh
Q psy15227 124 VAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHV---SYNSLNIALSILPVIFFILFSFV-PETPHFHAA 199 (515)
Q Consensus 124 ~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~l---~wr~~f~i~~~~~~~~~~~~~~~-pesp~~~~~ 199 (515)
...|+..+++.++...+ +.-.|-.-...++|.+++..+++.+ +-+..||+....+++..++.+.. |+.++....
T Consensus 120 ~~~~~~Ea~~er~sr~~--~feYG~~R~wGSig~ai~s~~~G~L~~i~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~ 197 (412)
T PF01306_consen 120 AGVPLSEAYAERVSRRN--GFEYGRARMWGSIGFAIASLLAGILFNINPNIIFWIASAAAIILLLLLLLLKPDVPPQAEV 197 (412)
T ss_dssp THHHHHHHHHHHHHHHH--SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS---SSSSS-S
T ss_pred ccchHHHHHHHHHHHHh--cCCcchHHHHhhHHHHHHHHHhheeeeeCccHHHHHHHHHHHHHHHHHHHcCCcCchhhhh
Confidence 55566666655544322 2223333444555555555555544 56678887777666655554443 343321110
Q ss_pred cCChhHHHHHHHhhcCCCcChHHHHHHHHHHhhhhhhchhhhhhhhccccchhHHHHHHHHHHHHHhhchHHHHHHHHhh
Q psy15227 200 KNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTL 279 (515)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (515)
.+..+ .++++.+.+...+++|+|++|...+............... +..|...+
T Consensus 198 ~~~~~--------------------------~~~~~~~~~~~~~l~k~~~fw~~~l~v~g~~~~Y~vfdqq-f~~y~~~~ 250 (412)
T PF01306_consen 198 ADALG--------------------------AKKDKVSLKDVLSLFKMRNFWFFVLFVIGVAAIYDVFDQQ-FPIYFASF 250 (412)
T ss_dssp STTSS--------------------------S------HHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHT
T ss_pred hcccc--------------------------cCCCCCcHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 00000 0000111123456777665554333333322222211111 23344444
Q ss_pred hcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHH
Q psy15227 280 LPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLY 359 (515)
Q Consensus 280 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 359 (515)
+++.+.+....|...+...+.+++.-.+.+++.+|+|.|+.++++..++.+-....++ .++.+.....-.+.
T Consensus 251 f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~--------~~~~~~i~~~klLH 322 (412)
T PF01306_consen 251 FQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGF--------ATNPWVISLIKLLH 322 (412)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT----------SHHHHHHHHHHH
T ss_pred hcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhh--------hcchHHHHHHHHHH
Confidence 4554444456778888888999999999999999999999999999999999888887 66777777777788
Q ss_pred HHHHhcccchhhhhhcccccchhhhhhhhHH-HHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHhhc
Q psy15227 360 AASYYGIGCLPNILVSELFPINVRCQASSCA-SVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFNYFYLME 438 (515)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~-~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (515)
+.-+........-|+++.+|++..++...+. +...+++..+.+.+.|.+.|+.|++.++++.+.+.+...++..+.+++
T Consensus 323 ~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~ 402 (412)
T PF01306_consen 323 ALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKK 402 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecC
Confidence 7777666666678999999999999998885 688899999999999999999999999999999988888887666654
Q ss_pred cc
Q psy15227 439 TK 440 (515)
Q Consensus 439 ~~ 440 (515)
.+
T Consensus 403 ~~ 404 (412)
T PF01306_consen 403 DK 404 (412)
T ss_dssp SS
T ss_pred CC
Confidence 33
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3e-20 Score=188.02 Aligned_cols=349 Identities=13% Similarity=0.066 Sum_probs=216.0
Q ss_pred HhhhhhccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhh----hhhh-hHHHHHHHHHHH
Q psy15227 23 LIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVE----KIGR-KTTLLLNALLCL 97 (515)
Q Consensus 23 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~D----r~Gr-r~~l~~~~~l~~ 97 (515)
+..++..+...+.++.+..+ .++ ++..++|.+..+..+.-++..|+.|.++| |+|| |+.++++.+..+
T Consensus 16 ~~~~~~~~~~~~~l~~yyt~--v~G-----ls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~ 88 (473)
T PRK10429 16 FGKDFAIGIVYMYLMYYYTD--VVG-----LSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANS 88 (473)
T ss_pred hHHhHHHHHHHHHHHHHHHH--hcC-----CCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHH
Confidence 33344444444444333221 367 99999999999999999999999999999 5698 666777887777
Q ss_pred HHHHHHHhh-h------hhHHHHHHHHhhhhhhhcccchhhhhhccc-ccccccccccccchhhhHHHHHHHHHhh----
Q psy15227 98 PTWFLVVSN-K------IECLYIARLFIGISKGVAYTAMPIFIGEIS-EHNIRGALGSIPSGFQMVGTLAILLIGN---- 165 (515)
Q Consensus 98 i~~~~~~~~-~------~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~-~~~~r~~~~~~~~~~~~lG~~~~~~l~~---- 165 (515)
++..++... + +..+++.-++.+++.....++-.+++.|+. +++||.+..++...+.++|..+.+.+..
T Consensus 89 i~~~llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~ 168 (473)
T PRK10429 89 VVLFLLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVN 168 (473)
T ss_pred HHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776666442 1 335556667778888888888899999998 5889999988866666666544433321
Q ss_pred H-------HHhHHHHHhhhHHHHHHHHHhh-cccCcchhhhhcCChhHHHHHHHhhcCCCcChHHHHHHHHHHhhhhhhc
Q psy15227 166 H-------VSYNSLNIALSILPVIFFILFS-FVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKS 237 (515)
Q Consensus 166 ~-------l~wr~~f~i~~~~~~~~~~~~~-~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (515)
. .+|+....+.+++.++..+..+ ..+|.+.....+. +++++..-
T Consensus 169 ~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~~~~~~----------------------------~~~~~~~~ 220 (473)
T PRK10429 169 YVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVYSSDNQVS----------------------------AEGSHLTL 220 (473)
T ss_pred HhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCceecCCcccccc----------------------------ccccCCCH
Confidence 1 1567666666666555444443 3566321000000 00000111
Q ss_pred hhhhhhhhccccchhHHHHHHHHHHHHHhhchHHHHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCC
Q psy15227 238 KTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGR 317 (515)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr 317 (515)
+..++.+++|+.++... ....... ........+.+++.+....+....+.......+..+++.++.+++.||+|+
T Consensus 221 ~~~~~~~~~n~~~~~ll----~~~~~~~-~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk 295 (473)
T PRK10429 221 KDIVALIYKNDQLSCLL----GMALAYN-IASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSR 295 (473)
T ss_pred HHHHHHHhcCHHHHHHH----HHHHHHH-HHHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 22233444553322211 1111111 123344445555554433232344455555667888999999999999999
Q ss_pred chhHHHhhHHHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhccccc-------chhhhhhhhHH
Q psy15227 318 KPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFP-------INVRCQASSCA 390 (515)
Q Consensus 318 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p-------~~~r~~~~g~~ 390 (515)
|+.+..+..+..++.+.+...... ...+.+..++...+.+++.+...+...++++|..+ .+..|...|..
T Consensus 296 k~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~ 372 (473)
T PRK10429 296 RILWAGASIFPVLSCGVLLLMGLA---APHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQ 372 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc---CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHH
Confidence 999887776655554443321110 02233444455556666666666777788888865 23345578999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhch
Q psy15227 391 SVALAFGSFITTKFHILITKSLGQ 414 (515)
Q Consensus 391 ~~~~~lg~~~~~~~~g~l~~~~g~ 414 (515)
..+..++..+++.+.|.+.+..|+
T Consensus 373 ~~~~K~~~al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 373 TMVVKGGSAFAAFFIGVVLGLIGY 396 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999887765
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.7e-19 Score=175.73 Aligned_cols=403 Identities=12% Similarity=0.053 Sum_probs=230.1
Q ss_pred hhhhccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhh-hhhHHHHHHHHHHHHHHHHH
Q psy15227 25 AGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKI-GRKTTLLLNALLCLPTWFLV 103 (515)
Q Consensus 25 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~-Grr~~l~~~~~l~~i~~~~~ 103 (515)
..+........+|.+..+ ++| .++.+.+.+.+.+.....++.+++|+++||+ ||||++.++.++..++.++.
T Consensus 21 e~fs~Yg~~~~L~~yL~~--~lg-----ls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll 93 (493)
T PRK15462 21 EYFSFYGMRALLILYLTN--QLK-----YDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVL 93 (493)
T ss_pred HHHHHHHHHHHHHHHHHH--hcC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHH
Confidence 344333344444444322 367 9999999999999999999999999999999 99999999999999998777
Q ss_pred Hhh--hhhHHHHHHHHhhhhhhhcccchhhhhhcccccc--cccccccccchhhhHHHHHHHHHhhHH----HhHHHHHh
Q psy15227 104 VSN--KIECLYIARLFIGISKGVAYTAMPIFIGEISEHN--IRGALGSIPSGFQMVGTLAILLIGNHV----SYNSLNIA 175 (515)
Q Consensus 104 ~~~--~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~--~r~~~~~~~~~~~~lG~~~~~~l~~~l----~wr~~f~i 175 (515)
+.. +...+.++..+.++|.|...+...++++|.+|++ +|..+.++...+.++|..++|.+.+++ ||++.|.+
T Consensus 94 ~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~i 173 (493)
T PRK15462 94 GASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGL 173 (493)
T ss_pred HHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHH
Confidence 654 2333444445555667777787889999999875 689999999999999999999998776 89999998
Q ss_pred hhHHHHHHHHHhhcccCcc-hhhhhcCChhHHHHHHHhhcC---CCcChHHHHH-H-HHHHhhhhhhc-----hhh----
Q psy15227 176 LSILPVIFFILFSFVPETP-HFHAAKNNLKKTEKSLKWYRG---NKKDVMEEMN-S-IMDKTQEDLKS-----KTG---- 240 (515)
Q Consensus 176 ~~~~~~~~~~~~~~~pesp-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~-~~~~~~~~~~~-----~~~---- 240 (515)
.++..++.++..+...+.. +....+++..+.++....... .-.-...... . ..+......-. ..-
T Consensus 174 aaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (493)
T PRK15462 174 AAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVATPALITVLFWKEWSVYALIVATIIGLGVLAK 253 (493)
T ss_pred HHHHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7654444333332211110 000000000000000000000 0000000000 0 00000000000 000
Q ss_pred -hhhhhccccchhHHHHHHHHHHHH---Hh---hchHHHHHHHHhhhcc--cCCCCCCcchhHHHHHHHHHHHHHHHHHH
Q psy15227 241 -YLELLTNKSNRRAFTLVMAASLFQ---RL---GGITSMITYSSTLLPK--LDNAYFGPDQCILVFMIIMFLSNFLQAPL 311 (515)
Q Consensus 241 -~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~g~l 311 (515)
.++. .++..++++.....+.... .. .....+..|.....+. .|++ ..+....++..+..++.+++.+++
T Consensus 254 ~~~~~-~~~~er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~-ip~~~~qslNp~~ii~l~P~~a~l 331 (493)
T PRK15462 254 IYRKA-ENQKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYT-VPTAMFQSINAFAVMLCGVFLAWV 331 (493)
T ss_pred HHHhc-CCHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhccee-eCHHHHHhHhHHHHHHHHHHHHHH
Confidence 0000 0011122222111111110 00 0112223333222222 1333 456677788888888888877777
Q ss_pred HhhhCC--ch-----hHHHhhHHHHHHHHHHHHHHHhhCC-CCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchhh
Q psy15227 312 MDILGR--KP-----LSCFSAALGCLLTFSTGLFYLYQGE-LPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVR 383 (515)
Q Consensus 312 ~d~~gr--r~-----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r 383 (515)
-.|..| |. -+.+++++.+++++.+.+.....++ ...+.+..+....++..+..+..|+..+.++++.|++.+
T Consensus 332 w~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~ 411 (493)
T PRK15462 332 VKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVT 411 (493)
T ss_pred HHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHH
Confidence 666532 21 2566777778777766554332221 123445566677778888899999999999999999999
Q ss_pred hhhhhHHHHHH-HHHHHHHHHHHHHHHhh------------hchhHHHHHHHHHHHHH-HHHHHHHh
Q psy15227 384 CQASSCASVAL-AFGSFITTKFHILITKS------------LGQHVIFFIYSSVHFCS-VVFNYFYL 436 (515)
Q Consensus 384 ~~~~g~~~~~~-~lg~~~~~~~~g~l~~~------------~g~~~~~~~~~~~~~~~-~~~~~~~~ 436 (515)
|+.+|+..... .+|+.++..+.+...+. ..+...|...+...+++ .++.+.++
T Consensus 412 g~~mg~w~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 478 (493)
T PRK15462 412 GVLTGIYMLLSGAIANYLAGVIADQTSQASFDASGAINYSINAYIEVFDQITWGALACVGVVLMIWL 478 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999986643 57777766666554311 12334666666666655 44444443
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-20 Score=188.13 Aligned_cols=370 Identities=14% Similarity=0.071 Sum_probs=233.7
Q ss_pred HHHHHHHHHhhhhhccchhhh-hhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhhh-----hhHH
Q psy15227 15 TNTASISLLIAGCWIAWPSVM-IKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIG-----RKTT 88 (515)
Q Consensus 15 ~~~~~l~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~G-----rr~~ 88 (515)
..++...++..|.. +..... .|.+.+ +++ ++.++++...+...+...+-.+ +|+++||++ ||+.
T Consensus 28 ~~~~~~~y~~qGl~-~l~~~~~~~~l~~---~lg-----~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~ 97 (468)
T TIGR00788 28 LAIGLQVLFVKGIA-GLMRLPLSPMLTD---DLG-----LDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWY 97 (468)
T ss_pred HHHHHHHHHHhhHH-HHhhhhhhHHHHH---hcC-----CCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHH
Confidence 34444455677777 554444 444433 588 9999999999999999999766 999999998 7777
Q ss_pred HHHHHHHHH-HHHHHHHhh-h-hhHHHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhhh---HHHHHHHH
Q psy15227 89 LLLNALLCL-PTWFLVVSN-K-IECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQM---VGTLAILL 162 (515)
Q Consensus 89 l~~~~~l~~-i~~~~~~~~-~-~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~---lG~~~~~~ 162 (515)
++++.++.+ ++....+.. + .....+.+++.+++.+...++..++..|..+ +++....+..+..+. +|.++++.
T Consensus 98 l~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~ 176 (468)
T TIGR00788 98 LVLSGLLGSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSL 176 (468)
T ss_pred HHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHH
Confidence 888776663 433333333 4 3444458899999999999999999999998 656555555554443 57777766
Q ss_pred HhhHH----HhHHHHHhhhHHHHHHHHHhhcccCcchhhhhcCChhHHHHHHHhhcCCCcChHHHHHHHHHHhhhhhhch
Q psy15227 163 IGNHV----SYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSK 238 (515)
Q Consensus 163 l~~~l----~wr~~f~i~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (515)
+++.+ +||..|++.+.+.++..+...++||++.....+.+.++.. . ...... ...+..++..
T Consensus 177 l~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~~~----~--------~~~~~~--~~~~~~~~~~ 242 (468)
T TIGR00788 177 LGGPLLDKTLTRILFLITAALLLLQLFVSNLSKERRAFVRPRIGTYLEM----N--------MALLTL--GVLANVKVQI 242 (468)
T ss_pred HHHHHHHhcCcchHHHHHHHHHHHHHHHHHhcccccccccccccccchh----h--------hhhhhh--hHHHHHHHHH
Confidence 66554 8999999998888777655667888531100000000000 0 000000 0000000011
Q ss_pred hhhhhhhccccchhHHHHHHHHHHHHHhhchHHHHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCc
Q psy15227 239 TGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRK 318 (515)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr 318 (515)
.+..+.+++|..++.....+.... ...+ .....+. ...+..|+++...+......+++.+++..+.+++.+|++.|
T Consensus 243 ~~l~~~l~~~~i~~~l~fifl~~~--~~~~-~~~~~f~-~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r 318 (468)
T TIGR00788 243 LGLRGAIQLLEIAKPLIFIFLSYA--NLPG-ASGSVFC-ATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYR 318 (468)
T ss_pred HHHHHHHhcHHHHHHHHHHHHHHh--hcCC-CCceeEE-EEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHH
Confidence 123344554443332222222011 1111 1111111 11234699999999999999999999999999999999999
Q ss_pred hhHHHhhHHHHHHHHHHHHHHHhhCC-C-CCCccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHH
Q psy15227 319 PLSCFSAALGCLLTFSTGLFYLYQGE-L-PNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAF 396 (515)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~l 396 (515)
+++.++.++.+++............. . ....+.......+.+++..........++.+..|++.+|+..++.+.+.++
T Consensus 319 ~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~l 398 (468)
T TIGR00788 319 LLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHL 398 (468)
T ss_pred HHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHH
Confidence 99888888877766543221111100 0 012233344445555555333334468899999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhc
Q psy15227 397 GSFITTKFHILITKSLG 413 (515)
Q Consensus 397 g~~~~~~~~g~l~~~~g 413 (515)
|..+++.+.+.+.++.|
T Consensus 399 g~~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 399 GSSVSGFLGVLLMETIG 415 (468)
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 99999999999999888
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.1e-19 Score=180.75 Aligned_cols=321 Identities=14% Similarity=0.099 Sum_probs=206.6
Q ss_pred cccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhh----hhh-hHHHHHHHHHHHHHHHHHHhh-h------hhHHH
Q psy15227 45 DLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEK----IGR-KTTLLLNALLCLPTWFLVVSN-K------IECLY 112 (515)
Q Consensus 45 ~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr----~Gr-r~~l~~~~~l~~i~~~~~~~~-~------~~~l~ 112 (515)
.++ ++..++|.+.++..+..++..|+.|+++|| +|| |+.++.+.+..+++..+.... + .+.++
T Consensus 39 ~~g-----ls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~ 113 (444)
T PRK09669 39 VFG-----LSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYAC 113 (444)
T ss_pred hcC-----CCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHH
Confidence 477 999999999999999999999999999998 787 455666777777766554433 2 45666
Q ss_pred HHHHHhhhhhhhcccchhhhhhccc-ccccccccccccchhhhHHHHHHHHHh----hH-------HHhHHHHHhhhHHH
Q psy15227 113 IARLFIGISKGVAYTAMPIFIGEIS-EHNIRGALGSIPSGFQMVGTLAILLIG----NH-------VSYNSLNIALSILP 180 (515)
Q Consensus 113 ~~r~l~G~~~g~~~~~~~~~i~e~~-~~~~r~~~~~~~~~~~~lG~~~~~~l~----~~-------l~wr~~f~i~~~~~ 180 (515)
+..++.+.+......+-.++.+|+. +++||++..++...+..+|..+++.+. .. .+|+..+.+.++++
T Consensus 114 ~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~ 193 (444)
T PRK09669 114 VTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLG 193 (444)
T ss_pred HHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHH
Confidence 6677777777777777788999988 457899888888777777766665432 22 26888888777777
Q ss_pred HHHHHHhhc-ccCcchhhhhcCChhHHHHHHHhhcCCCcChHHHHHHHHHHhhhhhhchhhhhhhhccccchhHHHHHHH
Q psy15227 181 VIFFILFSF-VPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGYLELLTNKSNRRAFTLVMA 259 (515)
Q Consensus 181 ~~~~~~~~~-~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (515)
++..+..++ .+|.++. ++ +++.+....++++++++.++......+.
T Consensus 194 ~v~~~~~~~~~~e~~~~-------~~--------------------------~~~~~~~~~~~~~~~n~~~~~l~~~~~~ 240 (444)
T PRK09669 194 VVLFFCCFFMTKERYTP-------EV--------------------------DNSSSVWKDLKLLLGNSQWRIMFIFNVV 240 (444)
T ss_pred HHHHHHHhCCeEEecCC-------CC--------------------------cCCCCHHHHHHHHhCCchHHHHHHHHHH
Confidence 665544433 4552110 00 0001112345666777654433222222
Q ss_pred HHHHHHhhchHHHHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHH
Q psy15227 260 ASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFY 339 (515)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~ 339 (515)
..... .......+++.+....++...+.......+..+++.++.++++||+|+|+.+..+..+..+....+..
T Consensus 241 ~~~~~-----~~~~~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~-- 313 (444)
T PRK09669 241 LLTAV-----VTRGGATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFF-- 313 (444)
T ss_pred HHHHH-----HHHhhhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH--
Confidence 21211 11122223333322111122233444455677788889999999999999888776655543332222
Q ss_pred HhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccc-------hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q psy15227 340 LYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPI-------NVRCQASSCASVALAFGSFITTKFHILITKSL 412 (515)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~-------~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~ 412 (515)
. ..++.+...+...+.+++.....+..+++++|..+. +..|...|..+.+..+|..+++.+.|.+.+..
T Consensus 314 ~----~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~ 389 (444)
T PRK09669 314 I----PPSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWV 389 (444)
T ss_pred h----CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 1 123344455556667777777778888999988752 23456678888999999999999999999877
Q ss_pred ch
Q psy15227 413 GQ 414 (515)
Q Consensus 413 g~ 414 (515)
|+
T Consensus 390 Gy 391 (444)
T PRK09669 390 DY 391 (444)
T ss_pred CC
Confidence 66
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.5e-18 Score=169.23 Aligned_cols=354 Identities=16% Similarity=0.180 Sum_probs=242.3
Q ss_pred hhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHHHH-HHHHHHHHHHHHHhh---hhhHHHHHHHHhhhhhhhcccchhh
Q psy15227 56 YQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLL-NALLCLPTWFLVVSN---KIECLYIARLFIGISKGVAYTAMPI 131 (515)
Q Consensus 56 ~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~~-~~~l~~i~~~~~~~~---~~~~l~~~r~l~G~~~g~~~~~~~~ 131 (515)
+..++..++..+..++..|+.|.++|+-|+||.++. ...+..+++.+..+. +++...+.-++.-++.+...+.-.+
T Consensus 70 s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna 149 (477)
T PF11700_consen 70 SLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNA 149 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445788899999999999999999999997766555 456666677776664 5666666677777788888888999
Q ss_pred hhhcccccccc--------------------------cccccccchhhhHHHHHHHHHhhHH------------HhHHHH
Q psy15227 132 FIGEISEHNIR--------------------------GALGSIPSGFQMVGTLAILLIGNHV------------SYNSLN 173 (515)
Q Consensus 132 ~i~e~~~~~~r--------------------------~~~~~~~~~~~~lG~~~~~~l~~~l------------~wr~~f 173 (515)
++.|..+++++ ++..+.-.....+|.++...+.-.+ +-|..+
T Consensus 150 ~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~ 229 (477)
T PF11700_consen 150 YLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAF 229 (477)
T ss_pred HhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHH
Confidence 99999999888 8888887777778877766655333 357778
Q ss_pred HhhhHHHHHHHHHh-hcccCcchhhhhcCChhHHHHHHHhhcCCCcChHHHHHHHHHHhhhhhhchhhhhhhhccccchh
Q psy15227 174 IALSILPVIFFILF-SFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGYLELLTNKSNRR 252 (515)
Q Consensus 174 ~i~~~~~~~~~~~~-~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (515)
.+.++.-++..+.. +++||.|+....+...... ....++ -...++++.+.|
T Consensus 230 ~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~--------------~~g~~~----------l~~t~k~~~~~~---- 281 (477)
T PF11700_consen 230 LIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYL--------------RFGFKR----------LWRTFKEIRKLR---- 281 (477)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHH--------------HHHHHH----------HHHHHHHHHhCh----
Confidence 88777766555544 4578876421000000000 000000 011222322222
Q ss_pred HHHHHHHHHHHHHhhchHHHHHHHHhhhc-ccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCc--hhHHHhhHHHH
Q psy15227 253 AFTLVMAASLFQRLGGITSMITYSSTLLP-KLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRK--PLSCFSAALGC 329 (515)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr--~~~~~~~~~~~ 329 (515)
.... +.+..+...-+.+.+......+.. +.|++..+.........+.+++|+++.+++.||+|.| +++..+.....
T Consensus 282 ~~~~-fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~ 360 (477)
T PF11700_consen 282 QLFL-FLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWI 360 (477)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHH
Confidence 1222 222222222345566666666665 5799988888888899999999999999999999988 67666555542
Q ss_pred HHHHHHHHHHHhh-CCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy15227 330 LLTFSTGLFYLYQ-GELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILI 408 (515)
Q Consensus 330 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l 408 (515)
+..+. +...... .....+.+...+...+.+.+.++..+..-++.+|+.|+++.+..+|++...+...+.+||.+.|.+
T Consensus 361 ~i~~~-g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i 439 (477)
T PF11700_consen 361 IIPLY-GLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLI 439 (477)
T ss_pred HHHHH-HHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22221 1110000 001345566777777888888999999999999999999999999999999999999999999999
Q ss_pred Hhhhc-hhHHHHHHHHHHHHHHHHHHHHhhccc
Q psy15227 409 TKSLG-QHVIFFIYSSVHFCSVVFNYFYLMETK 440 (515)
Q Consensus 409 ~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (515)
.+.+| .+..+....++.+++.++. ..++..+
T Consensus 440 ~~~tg~~r~g~~~l~~lf~~gl~ll-~~v~~~~ 471 (477)
T PF11700_consen 440 TDATGSQRYGFLFLLVLFLIGLILL-FFVDVEK 471 (477)
T ss_pred HHHhCCchhHHHHHHHHHHHHHHHH-hhccchh
Confidence 99988 6667777777766666654 4444433
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.2e-18 Score=173.65 Aligned_cols=317 Identities=14% Similarity=0.068 Sum_probs=194.8
Q ss_pred cchhhHHHHHHHHHHHhhhhhhhHhhhhhhh----hhhHHH-HHHHHHHHHHHHHHH-----hh---hhhHHHHHHHHhh
Q psy15227 53 LNKYQLSWMVSLLDLGNAISPIFAGILVEKI----GRKTTL-LLNALLCLPTWFLVV-----SN---KIECLYIARLFIG 119 (515)
Q Consensus 53 ~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~----Grr~~l-~~~~~l~~i~~~~~~-----~~---~~~~l~~~r~l~G 119 (515)
++..++|.+.+...+..++..++.|+++||. ||||.. .++.+...+..++.. .. ..+.++..-++.+
T Consensus 41 l~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (448)
T PRK09848 41 VGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAYLTYMGLG 120 (448)
T ss_pred CCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHHHHHHHHHH
Confidence 9999999999999999999999999999996 777654 555554444444432 11 1233444556778
Q ss_pred hhhhhcccchhhhhhccccc-ccccccccccchhhh-----HHHHHHHHHhhHH------HhHHHHHhhhHHHHHHHHHh
Q psy15227 120 ISKGVAYTAMPIFIGEISEH-NIRGALGSIPSGFQM-----VGTLAILLIGNHV------SYNSLNIALSILPVIFFILF 187 (515)
Q Consensus 120 ~~~g~~~~~~~~~i~e~~~~-~~r~~~~~~~~~~~~-----lG~~~~~~l~~~l------~wr~~f~i~~~~~~~~~~~~ 187 (515)
++.+...++..++..|..++ ++|.+..++...+.+ +|..++|.++... +|.....+.++++++..+..
T Consensus 121 ~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~v~~~~~~~~~ 200 (448)
T PRK09848 121 LCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWTIVLAIAGMVLYFIC 200 (448)
T ss_pred HHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHH
Confidence 88888888777877777654 678887666554433 4455556555432 12111122223333222222
Q ss_pred -hcccCcchhhhhcCChhHHHHHHHhhcCCCcChHHHHHHHHHHhhhhhhchhhhhhhhccccchhHHHHHHHHHHHHHh
Q psy15227 188 -SFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGYLELLTNKSNRRAFTLVMAASLFQRL 266 (515)
Q Consensus 188 -~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (515)
...||++.. + +++..-+..++++++++.++......++..
T Consensus 201 ~~~~~e~~~~---~-------------------------------~~~~~~~~~~~~l~~n~~f~~~~~~~~~~~----- 241 (448)
T PRK09848 201 FKSTRENVVR---I-------------------------------VAQPSLKISLQTLKRNRPLFMLCIGALCVL----- 241 (448)
T ss_pred HcCcEeccCC---C-------------------------------ccCCCHHHHHHHHhCCchHHHHHHHHHHHH-----
Confidence 234554210 0 000011223566777765443222222221
Q ss_pred hchHHHHHHHHhhhcc-cCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCC
Q psy15227 267 GGITSMITYSSTLLPK-LDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGEL 345 (515)
Q Consensus 267 ~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (515)
..........++++++ .|.+....+.......+..+++.++.+++.||+|+|+.+..+.++..++.+.+.+. .
T Consensus 242 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~------~ 315 (448)
T PRK09848 242 ISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWV------S 315 (448)
T ss_pred HHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc------C
Confidence 1223344455666554 35443333333333356677889999999999999999988888777766555431 1
Q ss_pred CCCccHHHHHHHHHHHHHhcccchhhhhhcccccch-------hhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhch
Q psy15227 346 PNFQYIPYITTLLYAASYYGIGCLPNILVSELFPIN-------VRCQASSCASVALAFGSFITTKFHILITKSLGQ 414 (515)
Q Consensus 346 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~-------~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~ 414 (515)
..+.+...+...+.+.+.....+...++.+|..|.+ .+|...|+.+....+|..+++.+.+.+.+..|+
T Consensus 316 ~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 316 VWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGY 391 (448)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 223344445556666776666677778888887653 358889999999999999999999998876664
|
|
| >KOG2563|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.1e-17 Score=155.28 Aligned_cols=390 Identities=11% Similarity=0.014 Sum_probs=262.3
Q ss_pred cchhHHHHHHHHHHHHHHhhhhhccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhh
Q psy15227 6 RSYVYQIIATNTASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIGR 85 (515)
Q Consensus 6 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Gr 85 (515)
+..++||.++++.++..+.+++.---.++...+... .++ +....-|+.-+|++.+....+++-|+.|++|-
T Consensus 38 rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~---~Yg------s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GL 108 (480)
T KOG2563|consen 38 RVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNS---FYG------SSSAADWLSMIYMVVSVPFGFAAMWILDKFGL 108 (480)
T ss_pred ccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHH---Hhc------chHHHHHHHHHHHHHHHHHhhHHHHhhcccch
Confidence 467889999999999888887765555555433322 122 55567789999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhh--h-----hh--HHHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhhhHH
Q psy15227 86 KTTLLLNALLCLPTWFLVVSN--K-----IE--CLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVG 156 (515)
Q Consensus 86 r~~l~~~~~l~~i~~~~~~~~--~-----~~--~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG 156 (515)
|...+++..+.++|+.+-..+ . ++ ....+..+.+.+.-...........-|++++||..+..+-.++..+|
T Consensus 109 R~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LG 188 (480)
T KOG2563|consen 109 RTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLG 188 (480)
T ss_pred HHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHH
Confidence 999999999999999988877 2 34 66688889888888777776777888999999999999988888888
Q ss_pred HHHHHHHhhHH----------HhHH--HHHhhhHHHHHHHHHhh-cccCcchhhhhcCChhHHHHHHHhhcCCCcChHHH
Q psy15227 157 TLAILLIGNHV----------SYNS--LNIALSILPVIFFILFS-FVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEE 223 (515)
Q Consensus 157 ~~~~~~l~~~l----------~wr~--~f~i~~~~~~~~~~~~~-~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (515)
..++.++...+ .|.. .|+....++.+.+++.. ..+|.|+.-++.
T Consensus 189 vavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~----------------------- 245 (480)
T KOG2563|consen 189 VAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSA----------------------- 245 (480)
T ss_pred HHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCch-----------------------
Confidence 88887776544 4654 35544444443333332 234433210000
Q ss_pred HHHHHHHhhhhhhchhhhhhhhccccchhHHHHHHHHHHHHHhhchHHHHHHHHhhhcccCCCCCCcchhHHHHHHHHHH
Q psy15227 224 MNSIMDKTQEDLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFL 303 (515)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 303 (515)
.+.. ..+..-..+.++.++++.+. ...+.+.......+...+.+...+...|++...+|.......+++.+
T Consensus 246 -s~~~---~~~~~f~~si~~~~~n~~F~-----il~~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gml 316 (480)
T KOG2563|consen 246 -SQAA---LQDASFPKSIKSCFKNRQFI-----ILAICYGIGLGLFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGML 316 (480)
T ss_pred -hHhh---hhcCcHHHHHHHHHcCccHH-----HHHHHHhhhHHHHHHHHHHhhhccccccCCccccchhHHHHHHHHHH
Confidence 0000 00112345667778765322 22222222223344455554444555677778999999999999999
Q ss_pred HHHHHHHHHhhhCCc-hhHHHhhHHHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchh
Q psy15227 304 SNFLQAPLMDILGRK-PLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINV 382 (515)
Q Consensus 304 ~~~~~g~l~d~~grr-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~ 382 (515)
++.+.|.+.||.+.- .+.++......++...+..... .....+.......+++.+..+..|+..-+..|..=|..
T Consensus 317 ga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~----~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~ 392 (480)
T KOG2563|consen 317 GALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTL----FLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVA 392 (480)
T ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhc----cCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccC
Confidence 999999999998753 3444444444444222221111 12334455555566666668888888888888865566
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc----hhHHHHHHHHHHHHHHHHHHHHhhccc
Q psy15227 383 RCQASSCASVALAFGSFITTKFHILITKSLG----QHVIFFIYSSVHFCSVVFNYFYLMETK 440 (515)
Q Consensus 383 r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (515)
-++..|+.+..+++.+.+-..+.+...+..+ +...-+..+..+++...+..++.++.+
T Consensus 393 E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y~ 454 (480)
T KOG2563|consen 393 EGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDYR 454 (480)
T ss_pred CcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhHH
Confidence 7899999999999999999999999988777 544445555555555555545444433
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.7e-17 Score=162.98 Aligned_cols=317 Identities=13% Similarity=0.088 Sum_probs=194.6
Q ss_pred cchhhHHHHHHHHHHHhhhhhhhHhhhhhh----hhhhH-HHHHHHHHHHHHHHHHHhh-h------hhHHHHHHHHhhh
Q psy15227 53 LNKYQLSWMVSLLDLGNAISPIFAGILVEK----IGRKT-TLLLNALLCLPTWFLVVSN-K------IECLYIARLFIGI 120 (515)
Q Consensus 53 ~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr----~Grr~-~l~~~~~l~~i~~~~~~~~-~------~~~l~~~r~l~G~ 120 (515)
+++..+|.+..+.-+--++..|+.|.++|| +|||| .++++.+..+++..++... + ...+.+.-++..+
T Consensus 42 l~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~~~ 121 (460)
T PRK11462 42 IPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTLLTL 121 (460)
T ss_pred CCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHH
Confidence 999999999999999999999999999996 78865 5556767777777666543 2 4445666677788
Q ss_pred hhhhcccchhhhhhcccc-cccccccccccchhhhHHHHHHHHHhhH----H-------HhHHHHHhhhHHHHHHHHHhh
Q psy15227 121 SKGVAYTAMPIFIGEISE-HNIRGALGSIPSGFQMVGTLAILLIGNH----V-------SYNSLNIALSILPVIFFILFS 188 (515)
Q Consensus 121 ~~g~~~~~~~~~i~e~~~-~~~r~~~~~~~~~~~~lG~~~~~~l~~~----l-------~wr~~f~i~~~~~~~~~~~~~ 188 (515)
+.......-.++..|..+ ++||++..++...+..+|..+++.+... + +|+....+.+++++++....+
T Consensus 122 ~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~ 201 (460)
T PRK11462 122 LYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCF 201 (460)
T ss_pred HHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 888888888899999987 6889999999999988887776555322 1 477766666666655554443
Q ss_pred c-ccCcchhhhhcCChhHHHHHHHhhcCCCcChHHHHHHHHHHhhhhhhchhhhhhhhccccchhHHHHHHHHHHHHHhh
Q psy15227 189 F-VPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLG 267 (515)
Q Consensus 189 ~-~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (515)
. .+|.++. + +++..-+..++..++|+.++. ......+.......
T Consensus 202 ~~~kE~~~~-----~-----------------------------~~~~~~~~~l~~~~~Nk~~~~-l~~~~~~~~~~~~~ 246 (460)
T PRK11462 202 FTTKERVEA-----P-----------------------------PTTTSMREDLRDIWQNDQWRI-VGLLTIFNILAVCV 246 (460)
T ss_pred hcceeccCC-----C-----------------------------ccCCCHHHHHHHHhCChHHHH-HHHHHHHHHHHHHH
Confidence 3 4553210 0 000001223445566554332 22222222221111
Q ss_pred chHHHHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCC
Q psy15227 268 GITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPN 347 (515)
Q Consensus 268 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (515)
......+|..+++ +.+ ...+.......+..+++.+++++++||+++|+....+..+..+...++.+ . . ..
T Consensus 247 ~~~~~~y~~~y~~---g~~-~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~--~-~---~~ 316 (460)
T PRK11462 247 RGGAMMYYVTWIL---GTP-EVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFF--V-P---MQ 316 (460)
T ss_pred HHhHhhhhhhhhc---CCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH--h-c---hh
Confidence 1122223322222 221 23344556677888899999999999999998876544433332222211 1 0 11
Q ss_pred CccHHHHHHHHHHHHHhcccchhhhhhcccccc-----hhh--hhhhhHHHHHHHHHHHHHHHHHHHHHhhhch
Q psy15227 348 FQYIPYITTLLYAASYYGIGCLPNILVSELFPI-----NVR--CQASSCASVALAFGSFITTKFHILITKSLGQ 414 (515)
Q Consensus 348 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~-----~~r--~~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~ 414 (515)
..+...+..++.+++.....+..+++.+|..+. ..| |...+.......+|..+++.+.|.+.+..|+
T Consensus 317 ~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy 390 (460)
T PRK11462 317 ASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGY 390 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 222233333444444445555556777777541 133 4445666788999999999999988876554
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.5e-17 Score=157.90 Aligned_cols=267 Identities=15% Similarity=0.151 Sum_probs=189.8
Q ss_pred hhhHHHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhhhHHHHHHHHHhhH--------------------
Q psy15227 107 KIECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNH-------------------- 166 (515)
Q Consensus 107 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~-------------------- 166 (515)
+|+.++++-++.|.|.+...+..+.++++..+++++.+.+++.+.++++|..++|.++..
T Consensus 9 ~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~~ 88 (310)
T TIGR01272 9 YYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAEA 88 (310)
T ss_pred HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHHH
Confidence 899999999999999999999999999999999999999999999999999999999863
Q ss_pred HHhHHHHHhhhHHHHHHHHHhhc--ccCcchhhhhcCChhHHHHHHHhhcCCCcChHHHHHHHHHHhhhhhhchhhhhhh
Q psy15227 167 VSYNSLNIALSILPVIFFILFSF--VPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGYLEL 244 (515)
Q Consensus 167 l~wr~~f~i~~~~~~~~~~~~~~--~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (515)
.+|+++|++.+.+.++..+.+.+ +||... ++.++. .+++. ...++.
T Consensus 89 ~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~-----~~~~~~------------------------~~~~~---~~~~~~ 136 (310)
T TIGR01272 89 AKVHTPYLLLAGALAVLAIIFAFLPLPELQE-----ADVARV------------------------SSGDT---TQKTSA 136 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCCCc-----cccccc------------------------ccccc---cchhhH
Confidence 25899999776665555444433 455211 000000 00000 001122
Q ss_pred hccccchhHHHHHHHHHHHHHhhchHHHHHHHHhhhcc---cCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhH
Q psy15227 245 LTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPK---LDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLS 321 (515)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~ 321 (515)
++++. ... ..+..+...........|.+.++.+ .|+++.+.+........+..+|+++.+++.||+++|+.+
T Consensus 137 ~~~~~----~~l-~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l 211 (310)
T TIGR01272 137 FQFTH----LVL-GALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYL 211 (310)
T ss_pred HhhHH----HHH-HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 33222 122 2233333333456677788888864 478888889999999999999999999999999999988
Q ss_pred HHhhHHHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHH
Q psy15227 322 CFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFIT 401 (515)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~ 401 (515)
..+..+..++.+++.. .+. ........+.+++.+...|...+...+.+|++ .+++.++. ....+|+.+.
T Consensus 212 ~~~~~l~~~~~~l~~~--------~~~-~~~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~ 280 (310)
T TIGR01272 212 AFNAFLAVLLSIGAAL--------THG-YVAMWFVLALGLFNSIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIV 280 (310)
T ss_pred HHHHHHHHHHHHHHHH--------cCC-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHH
Confidence 7777666665543333 222 22334555667776888888888888887764 56677764 6788999999
Q ss_pred HHHHHHHHhhhchhHHHHHH
Q psy15227 402 TKFHILITKSLGQHVIFFIY 421 (515)
Q Consensus 402 ~~~~g~l~~~~g~~~~~~~~ 421 (515)
|.+.|.+.|..|.+.++++.
T Consensus 281 P~l~G~lad~~g~~~a~~v~ 300 (310)
T TIGR01272 281 PLLQGSLADCLGIQLAFALP 300 (310)
T ss_pred HHHHHHHHHhccchHHHHHH
Confidence 99999999999987776633
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-17 Score=167.23 Aligned_cols=319 Identities=18% Similarity=0.258 Sum_probs=228.2
Q ss_pred cchhhHHHHHHHHHHHhhhhhhhHhhhhh----hhhhhHH-HHHHHHHHHHHHHHHHhh---------hhhHHHHHHHHh
Q psy15227 53 LNKYQLSWMVSLLDLGNAISPIFAGILVE----KIGRKTT-LLLNALLCLPTWFLVVSN---------KIECLYIARLFI 118 (515)
Q Consensus 53 ~s~~~~~~~~s~~~lg~~i~~~~~G~l~D----r~Grr~~-l~~~~~l~~i~~~~~~~~---------~~~~l~~~r~l~ 118 (515)
+++...|.+.....+..++..|+.|.++| |+||||. ++++.+..+++..++... ....+.+.-++.
T Consensus 34 l~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~~~l~ 113 (428)
T PF13347_consen 34 LSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVFYILF 113 (428)
T ss_pred CCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999 8997665 556777777777766532 123456777777
Q ss_pred hhhhhhcccchhhhhhcccc-cccccccccccchhhhHHHHHHHHHhhH----H-------HhHHHHHhhhHHHHHHHHH
Q psy15227 119 GISKGVAYTAMPIFIGEISE-HNIRGALGSIPSGFQMVGTLAILLIGNH----V-------SYNSLNIALSILPVIFFIL 186 (515)
Q Consensus 119 G~~~g~~~~~~~~~i~e~~~-~~~r~~~~~~~~~~~~lG~~~~~~l~~~----l-------~wr~~f~i~~~~~~~~~~~ 186 (515)
.++.......-.++..|+.+ +++|.+..+....+..+|.++...+... + +|++..++.+++.++..+.
T Consensus 114 ~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i 193 (428)
T PF13347_consen 114 DIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLI 193 (428)
T ss_pred HHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999998 4689999999988888888654444322 2 5898888888888776665
Q ss_pred hh-cccCcchhhhhcCChhHHHHHHHhhcCCCcChHHHHHHHHHHhhhhhhchhhhhhhhccccchhHHHHHHHHHHHHH
Q psy15227 187 FS-FVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGYLELLTNKSNRRAFTLVMAASLFQR 265 (515)
Q Consensus 187 ~~-~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (515)
.. ..+|.++. . ++.+++.+-+..+++++++|.++.. +....+...
T Consensus 194 ~~~~~ke~~~~------~-------------------------~~~~~~~~~~~~~~~~~~nr~~~~l-~~~~~~~~~-- 239 (428)
T PF13347_consen 194 TFFFVKERSVE------V-------------------------TEQEKKISLRDSLRSLFRNRPFRIL-LLAFFLQWL-- 239 (428)
T ss_pred hhheeeecccc------c-------------------------cccccccccccchhhhcccchHHHH-HHHHHHHHh--
Confidence 54 46661100 0 0001111223446677777654432 222222222
Q ss_pred hhchHHHHHHHHhhhccc-CCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCC
Q psy15227 266 LGGITSMITYSSTLLPKL-DNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGE 344 (515)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (515)
+........+++.+.. +.+ ...+.......+..+++.++.++++||+|+|+.+..+..+.+++.+.+.+..
T Consensus 240 --~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~----- 311 (428)
T PF13347_consen 240 --AFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLG----- 311 (428)
T ss_pred --hhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHH-----
Confidence 2223333334444432 333 4566667778889999999999999999999999999998888877766532
Q ss_pred CCCCccHHHHHHHHHHHHHhcccchhhhhhcccccc-------hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhch
Q psy15227 345 LPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPI-------NVRCQASSCASVALAFGSFITTKFHILITKSLGQ 414 (515)
Q Consensus 345 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~-------~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~ 414 (515)
.++.+..++...+.+.+.+......+++.+|+.+. +..|...|+.+....++..+++.+.+.+.+..|+
T Consensus 312 -~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy 387 (428)
T PF13347_consen 312 -PGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGY 387 (428)
T ss_pred -hhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCc
Confidence 14567777778888888877778888999998763 3358888999999999999999999988876654
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.4e-16 Score=152.46 Aligned_cols=322 Identities=15% Similarity=0.126 Sum_probs=227.1
Q ss_pred cchhhHHHHHHHHHHHhhhhhhhHhhhhhh----hhh-hHHHHHHHHHHHHHHHHHHhh-h------hhHHHHHHHHhhh
Q psy15227 53 LNKYQLSWMVSLLDLGNAISPIFAGILVEK----IGR-KTTLLLNALLCLPTWFLVVSN-K------IECLYIARLFIGI 120 (515)
Q Consensus 53 ~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr----~Gr-r~~l~~~~~l~~i~~~~~~~~-~------~~~l~~~r~l~G~ 120 (515)
+++..+|.+..+.-+--++..|+.|.+.|| +|| |+.++++.+-.++.+.++..+ + ....++.-.+.++
T Consensus 45 is~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l 124 (467)
T COG2211 45 LSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYMLLGL 124 (467)
T ss_pred CcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHHHHHH
Confidence 999999999999999999999999999996 887 556677878888888887766 3 4456666788899
Q ss_pred hhhhcccchhhhhhcccc-cccccccccccchhhhHHHHHHHHHhhH-----------HHhHHHHHhhhHHHHHHHHHhh
Q psy15227 121 SKGVAYTAMPIFIGEISE-HNIRGALGSIPSGFQMVGTLAILLIGNH-----------VSYNSLNIALSILPVIFFILFS 188 (515)
Q Consensus 121 ~~g~~~~~~~~~i~e~~~-~~~r~~~~~~~~~~~~lG~~~~~~l~~~-----------l~wr~~f~i~~~~~~~~~~~~~ 188 (515)
+......+-.++..|+.+ ++||.+..++.+.+.++|.++...+... .||+..-.+.++++++..+..+
T Consensus 125 ~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~ 204 (467)
T COG2211 125 GYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCF 204 (467)
T ss_pred HHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 999998888899999886 6789999999999999997765544422 2788888887777777666655
Q ss_pred c-ccCcchhhhhcCChhHHHHHHHhhcCCCcChHHHHHHHHHHhhhhhhchhhhhhhhccccchhHHHHHHHHHHHHHhh
Q psy15227 189 F-VPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLG 267 (515)
Q Consensus 189 ~-~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (515)
+ .+|.+.. .+.. +...+.+-+..+...++|+.++......++.. .
T Consensus 205 ~~v~ER~~~--~~~~---------------------------~~~~~~~~~~~~~~~~~Nrp~~~~l~~~l~~~-----~ 250 (467)
T COG2211 205 FNVKERVVE--TQPT---------------------------KTGVKLKLKDSFLLIFKNRPLLLLLLMNLLLF-----I 250 (467)
T ss_pred HHhhcccCc--cccC---------------------------cccccccHHHHHHHHHccchHHHHHHHHHHHH-----H
Confidence 4 5663310 0000 00001111223445667654443333222222 2
Q ss_pred chHHHHHHHHhhhcc-cCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCC
Q psy15227 268 GITSMITYSSTLLPK-LDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELP 346 (515)
Q Consensus 268 ~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (515)
+.+.......++.+. .|.+...+...........+++.++..++.+|+|+|+++..+.++..++.+++.+.. .
T Consensus 251 ~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~------~ 324 (467)
T COG2211 251 AFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTP------A 324 (467)
T ss_pred HHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhc------C
Confidence 233333333444433 354445555666667777777799999999999999999999888888887776621 3
Q ss_pred CCccHHHHHHHHHHHHHhcccchhhhhhcccccc-------hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhch
Q psy15227 347 NFQYIPYITTLLYAASYYGIGCLPNILVSELFPI-------NVRCQASSCASVALAFGSFITTKFHILITKSLGQ 414 (515)
Q Consensus 347 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~-------~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~ 414 (515)
++.+..++..++.+.+.+...+..+++++|...- +.-|...|....+.-+|.+++..+.|++.+..|+
T Consensus 325 ~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~Gy 399 (467)
T COG2211 325 GSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIGY 399 (467)
T ss_pred cchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4455566666777777788889999999988532 3347778888999999999999999999887664
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.7e-16 Score=147.21 Aligned_cols=345 Identities=10% Similarity=0.106 Sum_probs=235.4
Q ss_pred chhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHH-HHHHHHHHHHHHHHHHhh-h--h-hHHHHHHHHhhhhhhhcccc
Q psy15227 54 NKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTT-LLLNALLCLPTWFLVVSN-K--I-ECLYIARLFIGISKGVAYTA 128 (515)
Q Consensus 54 s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~-l~~~~~l~~i~~~~~~~~-~--~-~~l~~~r~l~G~~~g~~~~~ 128 (515)
+.+..+...++..+..++-+|+.|.++|+.|+||. +-....+..++..+..+. + + +..++.-.+..++.....+.
T Consensus 56 ~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vf 135 (438)
T COG2270 56 STAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVF 135 (438)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhhee
Confidence 34556888889999999999999999999996655 444566666666666776 4 4 44455577889998989999
Q ss_pred hhhhhhcccccccccccccccchhhhHHHHHHHHHhhH----------------------HHhHHHHHhhhHHHHHHHHH
Q psy15227 129 MPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNH----------------------VSYNSLNIALSILPVIFFIL 186 (515)
Q Consensus 129 ~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~----------------------l~wr~~f~i~~~~~~~~~~~ 186 (515)
-.+++.+..++++-++..++-.....+|..+.-+.... .+=|..+.+.++.-++..+-
T Consensus 136 yds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iP 215 (438)
T COG2270 136 YDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALP 215 (438)
T ss_pred hhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhH
Confidence 99999999999988888887766666666555444311 14567777777776665544
Q ss_pred hh-cccCcchhhhhcCChhHHHHHHHhhcCCCcChHHHHHHHHHHhhhhhhchhhhhhhhccccchhHHHHHHHHHHHHH
Q psy15227 187 FS-FVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGYLELLTNKSNRRAFTLVMAASLFQR 265 (515)
Q Consensus 187 ~~-~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (515)
.+ ..|+.++-. .....+ ...... +-..+++++.+++... .+.+..+..
T Consensus 216 m~~~v~~~~~~~---~~~~~~-------------l~~g~k----------~L~~t~k~i~~~~~i~-----~FLiA~~~~ 264 (438)
T COG2270 216 MILNVHDAEKIS---SPPPTA-------------LRNGFK----------ELKSTFKEIRGRKNLV-----LFLIARFFY 264 (438)
T ss_pred HHhccccccccc---ccchHH-------------HHHHHH----------HHHHHHHHHhcccchH-----HHHHHHHHH
Confidence 44 455544210 000000 001111 1123344444433221 122222222
Q ss_pred hhchHHHHHHHHhhhc-ccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCC
Q psy15227 266 LGGITSMITYSSTLLP-KLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGE 344 (515)
Q Consensus 266 ~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (515)
.-+.+........+-. ++|++..+.........+.+++|+++.|++.||+|.|+++..+.++..+..+....
T Consensus 265 ~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~------- 337 (438)
T COG2270 265 IDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIF------- 337 (438)
T ss_pred HhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHH-------
Confidence 2345666666666665 67998888888889999999999999999999999999888887777666555443
Q ss_pred CCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhchh-HHHHHHHH
Q psy15227 345 LPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQH-VIFFIYSS 423 (515)
Q Consensus 345 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~-~~~~~~~~ 423 (515)
........++.++.+.+.++..+..-++..+.+|+++-++.+|+++..++..++.+|.+.+.+.+.+|.. ..+..+.+
T Consensus 338 -~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~v 416 (438)
T COG2270 338 -LEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIV 416 (438)
T ss_pred -ccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 3334455556667777778888999999999999999999999999999999999999999999887753 33444444
Q ss_pred HHHHHHHHHHHHhhc
Q psy15227 424 VHFCSVVFNYFYLME 438 (515)
Q Consensus 424 ~~~~~~~~~~~~~~~ 438 (515)
+..++.+. +...|.
T Consensus 417 ll~iGl~~-L~~v~~ 430 (438)
T COG2270 417 LLLIGLLL-LLRVKV 430 (438)
T ss_pred HHHhhHhh-EEeecC
Confidence 44444333 234443
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.9e-15 Score=142.04 Aligned_cols=414 Identities=13% Similarity=0.058 Sum_probs=253.9
Q ss_pred HHHHHHHHhhhhhc-cchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhh-hhhhHHHHHHH
Q psy15227 16 NTASISLLIAGCWI-AWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEK-IGRKTTLLLNA 93 (515)
Q Consensus 16 ~~~~l~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr-~Grr~~l~~~~ 93 (515)
..+...-+-+.+.. ++-+...-++..+ +++. ++.|+++..-+.+.|..-.-+..+++|+++|| .|+|+++..|.
T Consensus 24 ~~if~vE~WERFsyYGmraiL~~Yl~~~---~~~g-Lg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGa 99 (498)
T COG3104 24 YLIFFVELWERFSYYGMRAILILYLYYQ---LGDG-LGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGA 99 (498)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHh---cccc-CCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 33344445555543 3334444444332 2222 44999999989999888888999999999999 89999999999
Q ss_pred HHHHHHHHHHHhh---hhhHHHHHHHHhhhhhhhcccchhhhhhccccccc--ccccccccchhhhHHHHHHHHHhhHH-
Q psy15227 94 LLCLPTWFLVVSN---KIECLYIARLFIGISKGVAYTAMPIFIGEISEHNI--RGALGSIPSGFQMVGTLAILLIGNHV- 167 (515)
Q Consensus 94 ~l~~i~~~~~~~~---~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~--r~~~~~~~~~~~~lG~~~~~~l~~~l- 167 (515)
++..+|.+..+.. +...+.++-.+.++|.|..-+...++++|.+|+++ |-..++++.++.++|.+++|.+.+++
T Consensus 100 il~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~ 179 (498)
T COG3104 100 ILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLA 179 (498)
T ss_pred HHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHH
Confidence 9999999998877 57889999999999999999999999999998654 67788999999999999999998777
Q ss_pred ---HhHHHHHhhhHHHHHHHHHhhcccCc----c---hhhhh--cCChhHHHHHHHhhcCC---CcChHHHHHHHHHHhh
Q psy15227 168 ---SYNSLNIALSILPVIFFILFSFVPET----P---HFHAA--KNNLKKTEKSLKWYRGN---KKDVMEEMNSIMDKTQ 232 (515)
Q Consensus 168 ---~wr~~f~i~~~~~~~~~~~~~~~pes----p---~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 232 (515)
+|...|-+.++-..+.++..+..+.. + ..... +.............-.. .....++.........
T Consensus 180 ~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 259 (498)
T COG3104 180 INYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVIS 259 (498)
T ss_pred HhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999988877766665554433221 1 00000 00000000000000000 0000000000000000
Q ss_pred hhhhchhhhhhhhcccc---chhHHHH------HHHHHHHHHhhchHHHHHHHHhhhccc--CCCCCCcchhHHHHHHHH
Q psy15227 233 EDLKSKTGYLELLTNKS---NRRAFTL------VMAASLFQRLGGITSMITYSSTLLPKL--DNAYFGPDQCILVFMIIM 301 (515)
Q Consensus 233 ~~~~~~~~~~~~~~~~~---~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~ 301 (515)
- .....-..+.++++. .+++.+. ...+.+...-.....+..|.....++. |++ .......+...+.-
T Consensus 260 i-~~~~~~~~~~~~~~~~~~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~-vp~~~fQslNp~~I 337 (498)
T COG3104 260 I-LIAIIYFAEAFRSPKVFDERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFE-VPPAWFQSLNPFFI 337 (498)
T ss_pred H-HHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhccccccee-cCHHHHHhhCHHHH
Confidence 0 000000011111111 1111111 111111111122344555554444332 433 56667778888888
Q ss_pred HHHHHHHHHHHhhhCCc--h-----hHHHhhHHHHHHHHHHHHHHHhhC--CCCCCccHHHHHHHHHHHHHhcccchhhh
Q psy15227 302 FLSNFLQAPLMDILGRK--P-----LSCFSAALGCLLTFSTGLFYLYQG--ELPNFQYIPYITTLLYAASYYGIGCLPNI 372 (515)
Q Consensus 302 ~~~~~~~g~l~d~~grr--~-----~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 372 (515)
++.+++..++..|.+++ . -+.++..+++.+++++........ +...+.+..+....+..++..+..|+...
T Consensus 338 ii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs 417 (498)
T COG3104 338 ILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSFGELFISPVGLS 417 (498)
T ss_pred HHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 88888888887775433 1 244566666666666655422222 22345566677777888888999999999
Q ss_pred hhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHH------HHhhhchhHHHHHHHHHHHHHHHHHHHH
Q psy15227 373 LVSELFPINVRCQASSCASVALAFGSFITTKFHIL------ITKSLGQHVIFFIYSSVHFCSVVFNYFY 435 (515)
Q Consensus 373 ~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~------l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 435 (515)
++....|+...+..+++.......++.++..+.+. ..+.......|...+.+.++.....+..
T Consensus 418 ~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~~~~ 486 (498)
T COG3104 418 MVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGILLLLL 486 (498)
T ss_pred HHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999988888888888877763 3334444556777777776666654433
|
|
| >KOG2325|consensus | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.1e-17 Score=157.34 Aligned_cols=392 Identities=13% Similarity=0.083 Sum_probs=240.9
Q ss_pred chhHHHHHHHHHHHHHHhhhhhccchhhh-hhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhh
Q psy15227 7 SYVYQIIATNTASISLLIAGCWIAWPSVM-IKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIGR 85 (515)
Q Consensus 7 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Gr 85 (515)
.++..|..+.+..+.+++.+...+...+. -|++.+. |.+ .+.+..|++.++..+|.+++++.+|++..|.|.
T Consensus 28 ~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~l--D~~-----A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~ 100 (488)
T KOG2325|consen 28 ERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKL--DPT-----ATATFFGLVIAASSLGHAIFSLIFGIWSNKTGS 100 (488)
T ss_pred ccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhc--CCC-----CCcchhhHHHHHHHHHHHhcchhhcccccccCC
Confidence 44567788888888888888888876554 4555543 455 888899999999999999999999999999997
Q ss_pred -hHHHHHHHHHHHHHHHHH-Hhh-----hhhHHHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhhhHHHH
Q psy15227 86 -KTTLLLNALLCLPTWFLV-VSN-----KIECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTL 158 (515)
Q Consensus 86 -r~~l~~~~~l~~i~~~~~-~~~-----~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~ 158 (515)
|+.++.|.++..+|+++. ++. .-+.++++|++.|+|.|.. ...-+|+++-...++|.++++....+..+|.+
T Consensus 101 ~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~-a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~i 179 (488)
T KOG2325|consen 101 VKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNF-AVLRAYIADASTVEDRPRAFAATSGGFVLGII 179 (488)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccH-HHHHHHHHhccCccchHHHHHHhhhHHHHHHH
Confidence 888999999999999998 544 4678999999999998754 77789999999999999999999999999999
Q ss_pred HHHHHhhHH------H-----------hHHHHHhhhHHHHHHHHHhh-cccCcchhhhhcCChhHHHHHHHhhcCCCcCh
Q psy15227 159 AILLIGNHV------S-----------YNSLNIALSILPVIFFILFS-FVPETPHFHAAKNNLKKTEKSLKWYRGNKKDV 220 (515)
Q Consensus 159 ~~~~l~~~l------~-----------wr~~f~i~~~~~~~~~~~~~-~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (515)
+||.++..+ | +..+-|+++++.++.++..+ ++.|.++--.+++.+++
T Consensus 180 lGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~~~~~~~~--------------- 244 (488)
T KOG2325|consen 180 LGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGIIDKKKRSV--------------- 244 (488)
T ss_pred HhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCccccccccc---------------
Confidence 999888665 1 33566778888777766655 47775532111110000
Q ss_pred HHHHHHHHHHhhhhhhchhhhhhhhccccc-hhHHHHHHHHHHHHHhhchHHHHHHHHhhhcccCCCCCCcchhHH-HHH
Q psy15227 221 MEEMNSIMDKTQEDLKSKTGYLELLTNKSN-RRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCIL-VFM 298 (515)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~ 298 (515)
++.+ +-.+..+.++. +...+.++...+...+.....-..+.+......+.+..++..... ...
T Consensus 245 ----~~~~-----------~~~~~~~~~~~d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~ 309 (488)
T KOG2325|consen 245 ----EEEK-----------SDIEKVKKPKLDWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLS 309 (488)
T ss_pred ----hhhc-----------cchhhhccCChhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHH
Confidence 0000 00011111222 222333333333333222222222333333334544333333222 222
Q ss_pred HHHHHHHH---HHHHHH-hhhCCchhHHHhhHHHHHHHHHHHHHHHhhC------C-------C----------CCCccH
Q psy15227 299 IIMFLSNF---LQAPLM-DILGRKPLSCFSAALGCLLTFSTGLFYLYQG------E-------L----------PNFQYI 351 (515)
Q Consensus 299 ~~~~~~~~---~~g~l~-d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~------~-------~----------~~~~~~ 351 (515)
+.+++... ...+.. .++.+|+.+..+......+..+....+.++. + . ..+.+.
T Consensus 310 ~~g~ls~~~~l~~~f~~l~~i~~r~~~~~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~ 389 (488)
T KOG2325|consen 310 ISGILSVILLLLYIFTRLGKIDKRRIILLGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLIL 389 (488)
T ss_pred HHHHHHHHHHHHHHHHHhhhhccceeeeehHHHHHHhhheeeeeccccccccccccccccCcCcccchhhccCcccChhh
Confidence 22222222 222221 2333444444443333333332222111111 0 0 000011
Q ss_pred -HHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHH
Q psy15227 352 -PYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSVV 430 (515)
Q Consensus 352 -~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 430 (515)
.+...++++.++........+..+|+..++.++++.+........+..++|.+........|.+..+.+.++..++...
T Consensus 390 ~l~~~i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~~~ 469 (488)
T KOG2325|consen 390 YLISFIVVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVVAA 469 (488)
T ss_pred heeehhheeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHHHH
Confidence 1111223333333233344577889999999999999999999999999999999999999998777776666655554
Q ss_pred HHHHHh
Q psy15227 431 FNYFYL 436 (515)
Q Consensus 431 ~~~~~~ 436 (515)
+.....
T Consensus 470 l~~~~~ 475 (488)
T KOG2325|consen 470 LWIVFL 475 (488)
T ss_pred HHHHHH
Confidence 443333
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.9e-16 Score=159.88 Aligned_cols=162 Identities=11% Similarity=0.080 Sum_probs=126.7
Q ss_pred cchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHH---Hhh-hhhHHHHHHHHhhhhhhhcccc
Q psy15227 53 LNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALLCLPTWFLV---VSN-KIECLYIARLFIGISKGVAYTA 128 (515)
Q Consensus 53 ~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~---~~~-~~~~l~~~r~l~G~~~g~~~~~ 128 (515)
.+..+.++..+...++..++.++.|+++||+|||+.+..+.++..++.+.+ ..+ +...++++|++.|++.+.....
T Consensus 283 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~ 362 (490)
T PRK10642 283 YSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGV 362 (490)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 777778888888999999999999999999999999888876544443332 223 5777888999999887777777
Q ss_pred hhhhhhcccccccccccccc-cchhhhHHHHHHHHHhhHH-----HhHHHHHhhhHHHHHHHHHhhcccCcchhhhhc--
Q psy15227 129 MPIFIGEISEHNIRGALGSI-PSGFQMVGTLAILLIGNHV-----SYNSLNIALSILPVIFFILFSFVPETPHFHAAK-- 200 (515)
Q Consensus 129 ~~~~i~e~~~~~~r~~~~~~-~~~~~~lG~~~~~~l~~~l-----~wr~~f~i~~~~~~~~~~~~~~~pesp~~~~~~-- 200 (515)
...++.|.+|++.|+.++++ ++.+ .++..++|.+.+.+ +|+.+++...+++++.++..+++||||+|+.++
T Consensus 363 ~~~~~~~~~p~~~Rg~~~g~~~~~~-~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~pes~~~~~~~~~ 441 (490)
T PRK10642 363 MASTLPAMFPTHIRYSALAAAFNIS-VLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTMKETANRPLKGAT 441 (490)
T ss_pred HHHHHHHHCCCccchHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccCCCCCCcc
Confidence 78889999999999999887 4444 44445666665543 477777777777777777777789999998765
Q ss_pred ---CChhHHHHHHHhhcC
Q psy15227 201 ---NNLKKTEKSLKWYRG 215 (515)
Q Consensus 201 ---~~~~~~~~~~~~~~~ 215 (515)
+|.||+++.+++++.
T Consensus 442 ~~~~~~~~a~~~l~~~~~ 459 (490)
T PRK10642 442 PAASDIQEAKEILVEHYD 459 (490)
T ss_pred ccccchhhHHHHhhcccc
Confidence 889999999998873
|
|
| >KOG3626|consensus | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.3e-14 Score=142.70 Aligned_cols=301 Identities=13% Similarity=0.124 Sum_probs=213.0
Q ss_pred HHHHHHHHHHHhhhhhccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHHHHH
Q psy15227 13 IATNTASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLN 92 (515)
Q Consensus 13 ~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~~~ 92 (515)
..+.+.++..+..++..++....+..+.+ .|+ ++.++.|++.+.+-++..+...+..+..-|.-|-+.+-+|
T Consensus 97 ~fl~~l~~~~~~q~l~~~y~~s~IttiEr---RF~-----i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G 168 (735)
T KOG3626|consen 97 MFLVLLSLAAFAQGLYVGYFNSVITTIER---RFK-----ISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIG 168 (735)
T ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhhhh---hcC-----CCCCcceeEeeecccchhhhhHhHHHhccccCccceeeec
Confidence 34556666777888888888888887755 488 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh----h------------------------------------------------hh-HHHHHHHHhh
Q psy15227 93 ALLCLPTWFLVVSN----K------------------------------------------------IE-CLYIARLFIG 119 (515)
Q Consensus 93 ~~l~~i~~~~~~~~----~------------------------------------------------~~-~l~~~r~l~G 119 (515)
+++++++++++++- + ++ .++.+.++.|
T Consensus 169 ~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~G 248 (735)
T KOG3626|consen 169 LVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLG 248 (735)
T ss_pred hhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhh
Confidence 99999999988752 0 22 5677899999
Q ss_pred hhhhhcccchhhhhhcccccccccccccccchhhhHHHHHHHHHhhHH-----------------------HhHHHHHhh
Q psy15227 120 ISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHV-----------------------SYNSLNIAL 176 (515)
Q Consensus 120 ~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~l-----------------------~wr~~f~i~ 176 (515)
+|....++.+.+|+-|...+++-+..+|+......+|+++|-++++.+ .|..-|++.
T Consensus 249 IG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~ 328 (735)
T KOG3626|consen 249 IGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLIC 328 (735)
T ss_pred cCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988664 277777888
Q ss_pred hHHHHHHHHHhhcccCcchhhhhcCChhHHHHHHHhhcCCCcChHHHHHHHHHHhhhhhhchhhhhhhhccccchhHHHH
Q psy15227 177 SILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGYLELLTNKSNRRAFTL 256 (515)
Q Consensus 177 ~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (515)
+.+.++..+.++++|....- .+++.+++ ..+..+.++++.+++ ....+.-++-+...+++++|| +++
T Consensus 329 g~~~~~~a~p~f~fPk~lp~---~~~~~~~~-~~~~~k~~~~~~~~~----~~~~~~ikdfp~s~~~ll~N~-----if~ 395 (735)
T KOG3626|consen 329 GALLLFSAVPLFFFPKELPK---SQKRKRAR-DLHVLKTESGGAKSD----KTFGKKIKDFPKSIKRLLSNP-----IFM 395 (735)
T ss_pred HHHHHHHHHHHHhCcccCcc---ccccchhh-hhcccccccccccCC----cchhhhHHHHHHHHHHHhcCc-----hHH
Confidence 88888888888888764321 11100000 000000000000000 000000011123456666665 455
Q ss_pred HHHHHHHHHhhchHHHHHHHHhhhcc-cCCCCCCcchhHHHHHH-HHHHHHHHHHHHHhhhC--CchhHHHhhHHHHHHH
Q psy15227 257 VMAASLFQRLGGITSMITYSSTLLPK-LDNAYFGPDQCILVFMI-IMFLSNFLQAPLMDILG--RKPLSCFSAALGCLLT 332 (515)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~g--rr~~~~~~~~~~~~~~ 332 (515)
...+........+..+.+|+|.|+++ .|.++..+..+....++ +..+|.+++|++.+|+. .|....+.++...+..
T Consensus 396 ~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~l 475 (735)
T KOG3626|consen 396 LVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLSL 475 (735)
T ss_pred HHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHHH
Confidence 55555555666678889999999876 58877777777755544 45678889999999875 4455555555555544
Q ss_pred HH
Q psy15227 333 FS 334 (515)
Q Consensus 333 ~~ 334 (515)
+.
T Consensus 476 ~~ 477 (735)
T KOG3626|consen 476 LF 477 (735)
T ss_pred HH
Confidence 44
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.3e-17 Score=163.89 Aligned_cols=377 Identities=13% Similarity=0.061 Sum_probs=3.0
Q ss_pred HHHHHHHhhhhhccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHHHHHHHHH
Q psy15227 17 TASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALLC 96 (515)
Q Consensus 17 ~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~~~~~l~ 96 (515)
..++..+......++....++++.+ .|+ ++.++.|++.+.+-++..+..++..++.+|..|-|.+-+|.++.
T Consensus 7 ~~~~~~~~q~~~~g~~~~~lttiEr---RF~-----l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~ 78 (539)
T PF03137_consen 7 FLCLLGLFQMMVSGYVNSSLTTIER---RFG-----LSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLM 78 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---hcC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHH
Confidence 3344445557788888888888866 499 99999999999999999999999999999988888899999999
Q ss_pred HHHHHHHHhh-----h----------------------------------------------hhHHHHHHHHhhhhhhhc
Q psy15227 97 LPTWFLVVSN-----K----------------------------------------------IECLYIARLFIGISKGVA 125 (515)
Q Consensus 97 ~i~~~~~~~~-----~----------------------------------------------~~~l~~~r~l~G~~~g~~ 125 (515)
++|++++++- . ++.++++.++.|+|....
T Consensus 79 ~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl 158 (539)
T PF03137_consen 79 GLGSLLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPL 158 (539)
T ss_dssp -------------------------------------------------------------------------SSS----
T ss_pred HHHHHHHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCC
Confidence 9998876542 0 346888899999999999
Q ss_pred ccchhhhhhcccccccccccccccchhhhHHHHHHHHHhhHH--------------------------HhHHHHHhhhHH
Q psy15227 126 YTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHV--------------------------SYNSLNIALSIL 179 (515)
Q Consensus 126 ~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~l--------------------------~wr~~f~i~~~~ 179 (515)
++.+.+|+-|..++++-+...|+..+...+|+++|.++++.+ .|..-|++.+.+
T Consensus 159 ~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~ 238 (539)
T PF03137_consen 159 YTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGIL 238 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988887543 155555566666
Q ss_pred HHHHHHHhhcccCcchhhhhcCChhHHHHHHHhhcCCCcChHHHHHHHHHH---hhhhhhchhhhhhhhccccchhHHHH
Q psy15227 180 PVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDK---TQEDLKSKTGYLELLTNKSNRRAFTL 256 (515)
Q Consensus 180 ~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (515)
.++..+.++++|+.-.-. ++..++.+...++... . .+++..+.+.. .+..+.-....+++++|| .++
T Consensus 239 ~~l~aipl~~FPk~lp~~--~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np-----~f~ 308 (539)
T PF03137_consen 239 LFLSAIPLFFFPKKLPGT--SERQEEKESSERKEED--S-DKDSFKDPKSKKSFGKSIKDFPKALKRLLTNP-----VFM 308 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHcCCccCCCc--ccccchhhhhhcchhh--h-hhhcccccccccchhhhhhhHHHHHHHHhcCh-----HHH
Confidence 665555555566532111 0000000000000000 0 00000000000 000111123344555554 444
Q ss_pred HHHHHHHHHhhchHHHHHHHHhhhcc-cCCCCCCcchhHHHHHH-HHHHHHHHHHHHHhhhC--CchhHHHhhHHHHHHH
Q psy15227 257 VMAASLFQRLGGITSMITYSSTLLPK-LDNAYFGPDQCILVFMI-IMFLSNFLQAPLMDILG--RKPLSCFSAALGCLLT 332 (515)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~g--rr~~~~~~~~~~~~~~ 332 (515)
...+...........+.+|.|.|++. .+.++.++..+.....+ +..+|.+++|++.+|++ .|..+....+...+..
T Consensus 309 ~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~ 388 (539)
T PF03137_consen 309 CLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSV 388 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHH
Confidence 44455555555567788899998876 58777777777655544 66789999999999975 4444444444444433
Q ss_pred HHHHHHHH-------------hh------C---C---------------------CCC--Ccc-HHHHHHHHHHHHH-hc
Q psy15227 333 FSTGLFYL-------------YQ------G---E---------------------LPN--FQY-IPYITTLLYAASY-YG 365 (515)
Q Consensus 333 ~~~~~~~~-------------~~------~---~---------------------~~~--~~~-~~~~~~~l~~~~~-~~ 365 (515)
+.+..... .+ . + ..+ ... ..++..++..+.. ..
T Consensus 389 ~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~ 468 (539)
T PF03137_consen 389 ILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMS 468 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhc
Confidence 33111110 00 0 0 000 011 1112222222222 33
Q ss_pred ccchhhhhhcccccchhhhhhhhHHHHH-HHHHHHHHHHHHHHHHhhh
Q psy15227 366 IGCLPNILVSELFPINVRCQASSCASVA-LAFGSFITTKFHILITKSL 412 (515)
Q Consensus 366 ~~~~~~~~~~~~~p~~~r~~~~g~~~~~-~~lg~~~~~~~~g~l~~~~ 412 (515)
..|. ....-..+|+++|+.|.|+...+ .-+|.+.+|.++|.+.|+.
T Consensus 469 ~~p~-~~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~t 515 (539)
T PF03137_consen 469 QVPS-TLITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDST 515 (539)
T ss_dssp ------------------------------------------------
T ss_pred ccch-heeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhhh
Confidence 3333 34455778999999999999755 4567789999999999974
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.3e-13 Score=124.46 Aligned_cols=320 Identities=12% Similarity=0.059 Sum_probs=213.5
Q ss_pred cchhhHHHHHHHHHHHhhhhhhhHhhhhhhhh-----hhHHHHH-HHHHHHHHHHHHHhh-----h----------hh--
Q psy15227 53 LNKYQLSWMVSLLDLGNAISPIFAGILVEKIG-----RKTTLLL-NALLCLPTWFLVVSN-----K----------IE-- 109 (515)
Q Consensus 53 ~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~G-----rr~~l~~-~~~l~~i~~~~~~~~-----~----------~~-- 109 (515)
++..-.+.+.++..+... ..+.+|+.+|+.+ ||..+++ |..+...+..+..++ + .+
T Consensus 12 vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~g~~ 90 (403)
T PF03209_consen 12 VPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWLGLA 90 (403)
T ss_pred cHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHH
Confidence 888888998888877766 5899999999999 8877666 566655555555543 2 12
Q ss_pred HHHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhhhHHHHHHHHHhhHH-----HhHHH--HHhhhHHHHH
Q psy15227 110 CLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHV-----SYNSL--NIALSILPVI 182 (515)
Q Consensus 110 ~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~l-----~wr~~--f~i~~~~~~~ 182 (515)
...+.-.+.|+|.+...++..+++.|..|+++|+++.++.....-+|.+++..+.+.+ .-|.. +...+++.++
T Consensus 91 ~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~a~i~~~ 170 (403)
T PF03209_consen 91 LAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGVALIALL 170 (403)
T ss_pred HHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHH
Confidence 3344567789999999999999999999999999999999999999999999888766 22222 2222222222
Q ss_pred HHHHhhcccCcchhhhhcCChhHHHHHHHhhcCCCcChHHHHHHHHHHhhhhhhchhhhhhhhccccchhHHHHHHHHHH
Q psy15227 183 FFILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGYLELLTNKSNRRAFTLVMAASL 262 (515)
Q Consensus 183 ~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (515)
..++..+=.|.++.... ....+++..-...++++..+|..++.+ ...++..
T Consensus 171 l~~ia~wg~E~r~~~~~----------------------------~~~~~~~~~f~~a~~~~~~~~~a~~f~-~fl~l~t 221 (403)
T PF03209_consen 171 LNLIALWGQEPRRSRRA----------------------------AAAERPRPPFREAWRQVWASPQARRFF-VFLFLGT 221 (403)
T ss_pred HHHHHHHhcccCCcccc----------------------------cCCCCCCccHHHHHHHHHhCCChhHHH-HHHHHHH
Confidence 22222232332110000 000011111233456666665544422 2222222
Q ss_pred HHHhhchHHHHHHHHhhh-cccCCCCCCcchhHHHHHHHHHHHHHHHHHHHh-hhCCchhHHHhhHHHHHHHHHHHHHHH
Q psy15227 263 FQRLGGITSMITYSSTLL-PKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMD-ILGRKPLSCFSAALGCLLTFSTGLFYL 340 (515)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~grr~~~~~~~~~~~~~~~~~~~~~~ 340 (515)
. ++...-..+..|- +-.|++..+...++...+.+.++|-.+.+++.. |.++++....++....+++.++.....
T Consensus 222 ~----a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~ 297 (403)
T PF03209_consen 222 L----AFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGP 297 (403)
T ss_pred H----HHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 1111112222222 225888888888999999999999999998776 677777777787777777766655433
Q ss_pred hhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q psy15227 341 YQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKS 411 (515)
Q Consensus 341 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~ 411 (515)
..+.+......++++++.+.+.....+.+.+..+++..|..+|.....+.++..++..+.|.+.|.
T Consensus 298 -----~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~ 363 (403)
T PF03209_consen 298 -----LGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDL 363 (403)
T ss_pred -----cccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677777888888887655555567777888888899999999999998888888888887764
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.3e-13 Score=137.20 Aligned_cols=180 Identities=12% Similarity=0.059 Sum_probs=145.3
Q ss_pred HHHHHHHHHHHHHhhchHHHHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHH
Q psy15227 253 AFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLT 332 (515)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~ 332 (515)
..+...++.+..+...........|.+.++.+.+..+.+...+...++..++.+..|++.||+|||+.+..+.++..++.
T Consensus 8 ~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~ 87 (412)
T TIGR02332 8 RLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIAS 87 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 34444444444544455566666777778889998899999999999999999999999999999999999988888888
Q ss_pred HHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHh--
Q psy15227 333 FSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITK-- 410 (515)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~-- 410 (515)
.+..+ .++.+..++.-++.+++.+...|....++.|.+|+++|+++.++.+....+|..+++.+.+.+.+
T Consensus 88 ~~~~~--------~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 159 (412)
T TIGR02332 88 TATMF--------ATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALD 159 (412)
T ss_pred HHHHH--------hcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 87776 45556666667777777776778777889999999999999999999999999999999998874
Q ss_pred ----hhchhHHHHHHHHHHHHHHHHHHHHhhccc
Q psy15227 411 ----SLGQHVIFFIYSSVHFCSVVFNYFYLMETK 440 (515)
Q Consensus 411 ----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (515)
..||+..|.+.++..++..++.+++.||++
T Consensus 160 ~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p 193 (412)
T TIGR02332 160 GLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSP 193 (412)
T ss_pred CCCCccchhHHHHHHHHHHHHHHHHHhhccCCCc
Confidence 368999999988887776666666667654
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.4e-14 Score=139.38 Aligned_cols=163 Identities=15% Similarity=0.073 Sum_probs=137.4
Q ss_pred HHHHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCCc
Q psy15227 270 TSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQ 349 (515)
Q Consensus 270 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (515)
..+....|.+.++.|.+..+.+.......++..++.++.|+++||+|||+.+..+..+..++...+.. ..+.
T Consensus 11 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~--------~~~~ 82 (399)
T TIGR00893 11 ANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAF--------AGAY 82 (399)
T ss_pred HhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHH--------HcCH
Confidence 44555667777788999889999999999999999999999999999999999888888877777666 4456
Q ss_pred cHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHH
Q psy15227 350 YIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSV 429 (515)
Q Consensus 350 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 429 (515)
+...+...+.+++.+...+....++.|.+|+++|+++.++......+|..+++.+.+.+.+..+|+..+.+.+++.++..
T Consensus 83 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 162 (399)
T TIGR00893 83 VSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWG 162 (399)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence 66777777788877777788889999999999999999999999999999999999999999999999988888777766
Q ss_pred HHHHHHhhccc
Q psy15227 430 VFNYFYLMETK 440 (515)
Q Consensus 430 ~~~~~~~~~~~ 440 (515)
+...+..++++
T Consensus 163 ~~~~~~~~~~~ 173 (399)
T TIGR00893 163 VLWLKFIPDPP 173 (399)
T ss_pred HHhhheecCCC
Confidence 66555555543
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.6e-13 Score=136.20 Aligned_cols=171 Identities=17% Similarity=0.125 Sum_probs=136.9
Q ss_pred HHHHHhhchHHHHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHH
Q psy15227 261 SLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYL 340 (515)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~ 340 (515)
..+...........+.|.+.++.|.+..+.+.......++..++.++.|+++||+|||+.+..+..+..++.++...
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~--- 101 (398)
T TIGR00895 25 IMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCAL--- 101 (398)
T ss_pred HHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHH---
Confidence 33333333455666778888888988888888889999999999999999999999999999888887777766655
Q ss_pred hhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHH
Q psy15227 341 YQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFI 420 (515)
Q Consensus 341 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~ 420 (515)
.++.+...+...+.+++.+...+...+++.|.+|++.|+++.++......+|..+++.+.+.+.+..||+..+.+
T Consensus 102 -----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~ 176 (398)
T TIGR00895 102 -----ATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYV 176 (398)
T ss_pred -----ccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhh
Confidence 344555566666666666667788889999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHhhcc
Q psy15227 421 YSSVHFCSVVFNYFYLMET 439 (515)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~ 439 (515)
.+++..+..++.....+++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~ 195 (398)
T TIGR00895 177 GGIAPLLLLLLLMRFLPES 195 (398)
T ss_pred hhhHHHHHHHHHHHhCCCC
Confidence 7666666655555556654
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.2e-13 Score=138.49 Aligned_cols=172 Identities=12% Similarity=-0.030 Sum_probs=135.9
Q ss_pred HHHHHHHhhchHHHHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHH
Q psy15227 259 AASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLF 338 (515)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~ 338 (515)
++..+...........+.|.+.++.|.+..+.+...+...++..++.++.|++.||+|||+.+..+.++.+++.++...
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~- 107 (434)
T PRK11663 29 YLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGF- 107 (434)
T ss_pred HHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHH-
Confidence 3333333333345667788888889999888899999999999999999999999999999999998888888777665
Q ss_pred HHhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhchhHHH
Q psy15227 339 YLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIF 418 (515)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~ 418 (515)
.++.+...+..++.+++.+...+....++.|.+|+++|++++++.+....+|..++|.+.+.+.+..||+..|
T Consensus 108 -------~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f 180 (434)
T PRK11663 108 -------SSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGM 180 (434)
T ss_pred -------HhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHH
Confidence 3344445444555565555556777789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q psy15227 419 FIYSSVHFCSVVFNYFYLME 438 (515)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~ 438 (515)
.+.+++.++..+...+..+|
T Consensus 181 ~~~~i~~~~~~~~~~~~~~~ 200 (434)
T PRK11663 181 MIAGIIAIVVGLFLCWRLRD 200 (434)
T ss_pred HHHHHHHHHHHHHHHHHcCC
Confidence 88887766555544444444
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.53 E-value=9.1e-14 Score=130.20 Aligned_cols=182 Identities=12% Similarity=0.000 Sum_probs=150.8
Q ss_pred hhHHHHHHHHHHHHHhhchHHHHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHH
Q psy15227 251 RRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCL 330 (515)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~ 330 (515)
+..++...++........--.+..-.|.+.++.++|..+.+.+.+...+..-++.++.|.++||.+.|..+..++++.++
T Consensus 27 r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai 106 (448)
T COG2271 27 RIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAI 106 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHH
Confidence 34445555544443333334456667888888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHH--HHH
Q psy15227 331 LTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFH--ILI 408 (515)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~--g~l 408 (515)
..+++++ .++.+...++..+-+.+-+...|.....+..-+|+++||+..++-|++.++|+.+.|.+. +.+
T Consensus 107 ~nil~Gf--------s~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~ 178 (448)
T COG2271 107 VNILFGF--------SPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFF 178 (448)
T ss_pred HHHHHhh--------hhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHH
Confidence 9999988 555666666666777766666677778889999999999999999999999999999999 999
Q ss_pred HhhhchhHHHHHHHHHHHHHHHHHHHHhhccc
Q psy15227 409 TKSLGQHVIFFIYSSVHFCSVVFNYFYLMETK 440 (515)
Q Consensus 409 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (515)
.++.+|+..|++-++++++..++.++..+++.
T Consensus 179 ~~~~~w~~~f~~pgiiaiival~~~~~~rd~P 210 (448)
T COG2271 179 AFHGGWRAAFYFPGIIAIIVALILLFLLRDRP 210 (448)
T ss_pred HhccchhHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 99999999999999999998888877766543
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.8e-13 Score=131.27 Aligned_cols=167 Identities=15% Similarity=0.083 Sum_probs=133.3
Q ss_pred HHHHHHHHHHHHHhhchHHHHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHH
Q psy15227 253 AFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLT 332 (515)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~ 332 (515)
+.+..+.+................|.+.++.|.+..+.+...+...++..++.++.|+++||+|||+.+..+..+.+++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~ 91 (405)
T TIGR00891 12 NAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGT 91 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 33444444444444455666677788888889998999999999999999999999999999999999998888888877
Q ss_pred HHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q psy15227 333 FSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSL 412 (515)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~ 412 (515)
+.... .++.+..++..++.+.+.+...+...+++.|.+|+++|+++.++.+....+|..+++.+.+.+.+..
T Consensus 92 ~~~~~--------~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~ 163 (405)
T TIGR00891 92 LACGF--------APGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVW 163 (405)
T ss_pred HHHHH--------hccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 77665 4455666666777777777777777889999999999999999999999999999999999988876
Q ss_pred c--hhHHHHHHHHHHHH
Q psy15227 413 G--QHVIFFIYSSVHFC 427 (515)
Q Consensus 413 g--~~~~~~~~~~~~~~ 427 (515)
+ |+..+.+.++..++
T Consensus 164 ~~~w~~~f~~~~~~~~~ 180 (405)
T TIGR00891 164 GDGWRALFFISILPIIF 180 (405)
T ss_pred CccHHHHHHHHHHHHHH
Confidence 6 88777765444433
|
|
| >KOG2816|consensus | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.5e-12 Score=126.86 Aligned_cols=314 Identities=15% Similarity=0.117 Sum_probs=206.3
Q ss_pred HHHHHhhhhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhh--hhhcccchhhhhhccccccc
Q psy15227 64 LLDLGNAISPIFAGILVEKIGRKTTLLLNALLCLPTWFLVVSNKIECLYIARLFIGIS--KGVAYTAMPIFIGEISEHNI 141 (515)
Q Consensus 64 ~~~lg~~i~~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~l~~~r~l~G~~--~g~~~~~~~~~i~e~~~~~~ 141 (515)
...+...+.++..|.++||+|||..+....+...+..+...+..+|.++ +.|+. .+.......++++|....++
T Consensus 70 ~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~~ 145 (463)
T KOG2816|consen 70 TAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQGYWFFL----LLGLSGGFSAIFSVGFAYVADISSEEE 145 (463)
T ss_pred hhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHhh----hcccccchhhhhhhhhhheeeccchhH
Confidence 4467888899999999999999999999999988888887777655444 44432 34456778889999999999
Q ss_pred ccccccccchhhhHHHHHHHHHhhHH----HhHHHHHhhhHHHHHHHHHhh-cccCcchhhhhcCChhHHHHHHHhhcCC
Q psy15227 142 RGALGSIPSGFQMVGTLAILLIGNHV----SYNSLNIALSILPVIFFILFS-FVPETPHFHAAKNNLKKTEKSLKWYRGN 216 (515)
Q Consensus 142 r~~~~~~~~~~~~lG~~~~~~l~~~l----~wr~~f~i~~~~~~~~~~~~~-~~pesp~~~~~~~~~~~~~~~~~~~~~~ 216 (515)
|....++....+..+..++|.+++.+ |.-..|.+..+..++..+... ++||+-.- +++.+ .........
T Consensus 146 R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~---~~~~~---~~~~~~~~~ 219 (463)
T KOG2816|consen 146 RSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQE---KERSD---ATLRELTPG 219 (463)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCc---ccccc---ccccccCCC
Confidence 99999999998888888888888766 666778888888777766655 58986421 11110 000000000
Q ss_pred CcChHHHHHHHHHHhhhhhhchhhhhhhhccccchhHHHHHHHHHHHHHhhchHHHHHHHHhhhc-ccCCCCCCcchhHH
Q psy15227 217 KKDVMEEMNSIMDKTQEDLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLP-KLDNAYFGPDQCIL 295 (515)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~ 295 (515)
.. ........+....+ .+..+..+..+....+..........-..+.+++ ..+++..+.+.+.+
T Consensus 220 ~~--------------~~~~~~~~~~~~~~-~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~ 284 (463)
T KOG2816|consen 220 SL--------------DSSHVADAFQSLTK-VGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLS 284 (463)
T ss_pred cc--------------cchhhhhhhhhhcc-cCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHH
Confidence 00 00000111111111 1111111111111111110000000001122333 25888788888888
Q ss_pred HHHHHHHHHHHHHH-HHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhh
Q psy15227 296 VFMIIMFLSNFLQA-PLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILV 374 (515)
Q Consensus 296 ~~~~~~~~~~~~~g-~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 374 (515)
..+....++.++.. .+...++.|+.+..++....+....+++ .+..|..+....... ......|...+..
T Consensus 285 ~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af--------~~~~w~~~~~~v~~~-~~~~~~pa~~s~~ 355 (463)
T KOG2816|consen 285 LVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAF--------ATETWMMFAAGVVVA-LAGIVFPAIRAFA 355 (463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHH--------hccchhhhHHHHHHH-hhcchhHHHHhHH
Confidence 88888888888777 6777789888888888888888888887 555565554443332 2355556777888
Q ss_pred cccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q psy15227 375 SELFPINVRCQASSCASVALAFGSFITTKFHILITKS 411 (515)
Q Consensus 375 ~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~ 411 (515)
+...+++.+|+++++...+..+.+.++|.+.+.+...
T Consensus 356 s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~ 392 (463)
T KOG2816|consen 356 SILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFAL 392 (463)
T ss_pred HhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHH
Confidence 8889999999999999999999999999999888654
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.4e-13 Score=136.89 Aligned_cols=173 Identities=16% Similarity=0.088 Sum_probs=143.0
Q ss_pred HHHHHHHhhchHHHHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHH
Q psy15227 259 AASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLF 338 (515)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~ 338 (515)
....+.............|.+.++.|.+..+.+.......++..++.++.|+++||+|||+.+..+..+..++.+++..
T Consensus 8 ~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~- 86 (485)
T TIGR00711 8 MLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGV- 86 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhC-
Confidence 3333334344566777788999999998889999999999999999999999999999999999998888888777665
Q ss_pred HHhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhchhHHH
Q psy15227 339 YLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIF 418 (515)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~ 418 (515)
.++.+..++...+.+++.+...+...+++.|.+|+++|+++.++......+|..++|.+.+.+.++.+|+..|
T Consensus 87 -------~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f 159 (485)
T TIGR00711 87 -------APNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIF 159 (485)
T ss_pred -------cCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehh
Confidence 4555666666677777767777888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcc
Q psy15227 419 FIYSSVHFCSVVFNYFYLMET 439 (515)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~ 439 (515)
++.+.+.++..++..+..+++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~ 180 (485)
T TIGR00711 160 LINVPIGIIVVVVAFFILPRD 180 (485)
T ss_pred hhhhHHHHHHHHHHHHHcCCc
Confidence 888877777766665555553
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.8e-13 Score=132.95 Aligned_cols=164 Identities=18% Similarity=0.175 Sum_probs=134.4
Q ss_pred hHHHHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCC
Q psy15227 269 ITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNF 348 (515)
Q Consensus 269 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (515)
........|.+.++.|.+..+.+.......++..++.++.|++.||+|||+.+..+..+..++.+.... .++
T Consensus 21 ~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~--------~~~ 92 (385)
T TIGR00710 21 IDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLAL--------SNN 92 (385)
T ss_pred HHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHH--------Hcc
Confidence 344445567778888998889999999999999999999999999999999999888888887777665 344
Q ss_pred ccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHH
Q psy15227 349 QYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCS 428 (515)
Q Consensus 349 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~ 428 (515)
.+...+..++.+++.....+...+++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..+|+..+.+.++..++.
T Consensus 93 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~ 172 (385)
T TIGR00710 93 IETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILL 172 (385)
T ss_pred HHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 55555566666666666667778899999999999999999999999999999999999999999999888888877777
Q ss_pred HHHHHHHhhccc
Q psy15227 429 VVFNYFYLMETK 440 (515)
Q Consensus 429 ~~~~~~~~~~~~ 440 (515)
.+...+..||++
T Consensus 173 ~~~~~~~~~~~~ 184 (385)
T TIGR00710 173 SALIFFILPETL 184 (385)
T ss_pred HHHHHHhCCCCC
Confidence 666555555543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1e-12 Score=130.13 Aligned_cols=158 Identities=13% Similarity=0.035 Sum_probs=131.3
Q ss_pred HHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCCccHH
Q psy15227 273 ITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIP 352 (515)
Q Consensus 273 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (515)
....|.+.++.|.+..+.+...+...++..++.+..|++.||+|||+.+..+..+..++.+.... .++.+..
T Consensus 29 ~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--------~~~~~~l 100 (390)
T PRK03545 29 VGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSAL--------AWNFTVL 100 (390)
T ss_pred HcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHH--------hccHHHH
Confidence 34467888888999889999999999999999999999999999999999998888888777766 4555666
Q ss_pred HHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHH
Q psy15227 353 YITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFN 432 (515)
Q Consensus 353 ~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 432 (515)
++..++.+.+.+...+...+++.|.+|+++|+++.|+......+|..++|.+.+.+.+..||+..|++.+++.++..+..
T Consensus 101 ~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~ 180 (390)
T PRK03545 101 LISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLL 180 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Confidence 66666666666556677778899999999999999999999999999999999999999999999999888877766555
Q ss_pred HHHhhc
Q psy15227 433 YFYLME 438 (515)
Q Consensus 433 ~~~~~~ 438 (515)
+...|+
T Consensus 181 ~~~~~~ 186 (390)
T PRK03545 181 IKLLPL 186 (390)
T ss_pred HHhCCC
Confidence 444443
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.1e-12 Score=124.50 Aligned_cols=169 Identities=14% Similarity=0.084 Sum_probs=154.2
Q ss_pred HHHHHhhchHHHHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHH
Q psy15227 261 SLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYL 340 (515)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~ 340 (515)
..+..........-.+|.+.++.+.+..+++...+.+..+..++.++...+.||+.||++++..+.+..++.++..+
T Consensus 21 ~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~al--- 97 (394)
T COG2814 21 AAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSAL--- 97 (394)
T ss_pred HHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHH---
Confidence 33333344566777889999999999999999999999999999999999999999999999999999999999988
Q ss_pred hhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHH
Q psy15227 341 YQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFI 420 (515)
Q Consensus 341 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~ 420 (515)
.++.+...+.=.+.++..+.+.++..+...++.|+++|+++.++......++..+|.++..++-|.+||+.+|+.
T Consensus 98 -----Ap~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ 172 (394)
T COG2814 98 -----APSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLA 172 (394)
T ss_pred -----hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHH
Confidence 777888888888888888888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy15227 421 YSSVHFCSVVFNYFYLM 437 (515)
Q Consensus 421 ~~~~~~~~~~~~~~~~~ 437 (515)
.+++.++..+..+..+|
T Consensus 173 ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 173 IAVLALLALLLLWKLLP 189 (394)
T ss_pred HHHHHHHHHHHHHHhCC
Confidence 99999999998888888
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.2e-12 Score=129.46 Aligned_cols=152 Identities=13% Similarity=0.111 Sum_probs=129.2
Q ss_pred HHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCCccH
Q psy15227 272 MITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYI 351 (515)
Q Consensus 272 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (515)
.....|.+.++.|.++.+.+.......+...+++++.|++.||+|||+.+..+..+.+++.+.... .++.+.
T Consensus 39 ~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~--------~~~~~~ 110 (394)
T PRK10213 39 PVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSF--------ANSFSL 110 (394)
T ss_pred HHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHH--------HChHHH
Confidence 334567777888999888999999999999999999999999999999999999998888777665 455666
Q ss_pred HHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHH
Q psy15227 352 PYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSVVF 431 (515)
Q Consensus 352 ~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 431 (515)
.++.-.+.+++.+...+....++.|.+|+++|+.+.++.....++|..++|.+.+.+.+..||+..|++.+++.+++.+.
T Consensus 111 l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~ 190 (394)
T PRK10213 111 LLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFW 190 (394)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHH
Confidence 77777777777766777888899999999999999999999999999999999999999999999998887666655443
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.48 E-value=7e-14 Score=116.59 Aligned_cols=131 Identities=27% Similarity=0.404 Sum_probs=116.1
Q ss_pred HHHHHHHhhhhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHhhhhhhhcccchhhhhhcccccc
Q psy15227 62 VSLLDLGNAISPIFAGILVEKIGRKTTLLLNALLCLPTWFLVVSN-KIECLYIARLFIGISKGVAYTAMPIFIGEISEHN 140 (515)
Q Consensus 62 ~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~ 140 (515)
.+.+.++..+++++.|++.||+|||+.+..+..+..++.+..... +++.+.+.+++.|++.+...+....++.|.+|++
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 83 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE 83 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence 455678889999999999999999999999999999999988888 9999999999999999999999999999999999
Q ss_pred cccccccccchhhhHHHHHHHHHhhHH----HhHHHHHhhhHHHHHHHHHhhc-ccC
Q psy15227 141 IRGALGSIPSGFQMVGTLAILLIGNHV----SYNSLNIALSILPVIFFILFSF-VPE 192 (515)
Q Consensus 141 ~r~~~~~~~~~~~~lG~~~~~~l~~~l----~wr~~f~i~~~~~~~~~~~~~~-~pe 192 (515)
+|++..++.+....+|..+++.+.+.+ +|++.+++.+...++..+...+ .||
T Consensus 84 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 84 ERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred hhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 999999999999999999998888766 7999999888877766655544 455
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.4e-13 Score=131.23 Aligned_cols=179 Identities=15% Similarity=0.144 Sum_probs=140.7
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHH
Q psy15227 254 FTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTF 333 (515)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~ 333 (515)
.+............+........|.+.++.|.+..+.+...+...++..++.++.|+++||+|||+.+..+.....++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~ 83 (392)
T PRK10473 4 FLLCSFALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASL 83 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHH
Confidence 34444445555555556666788888888898877888888888999999999999999999999999988888877777
Q ss_pred HHHHHHHhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy15227 334 STGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLG 413 (515)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~g 413 (515)
.+.. .++.+..++...+.+.+.+...+....++.|.+|+++|+++.++.+....++..++|.+.+.+.+..+
T Consensus 84 ~~~~--------~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g 155 (392)
T PRK10473 84 LCSL--------AETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFP 155 (392)
T ss_pred HHHH--------hCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 6655 34444555555566665555566677899999999999999999999999999999999999888899
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhccc
Q psy15227 414 QHVIFFIYSSVHFCSVVFNYFYLMETK 440 (515)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (515)
|+..+++.+++.++..++.....+|++
T Consensus 156 ~~~~~~~~~~~~~i~~~~~~~~~~~~~ 182 (392)
T PRK10473 156 WQSLFYTMAAMGILVLLLSLFILKETR 182 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 998898888887777766655555543
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.7e-12 Score=128.41 Aligned_cols=165 Identities=10% Similarity=0.055 Sum_probs=126.6
Q ss_pred hhchHHHHHHHHhhh-cccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCC
Q psy15227 266 LGGITSMITYSSTLL-PKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGE 344 (515)
Q Consensus 266 ~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (515)
..+......+.+.++ ++.|.+..+.+...+...+..+++++..|+++||+|||+.+..+..+..++.+.+.+
T Consensus 20 ~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~------- 92 (395)
T PRK10054 20 TIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPL------- 92 (395)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHH-------
Confidence 334555666666666 457999889999999999999999999999999999999988888877777666554
Q ss_pred CCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHH
Q psy15227 345 LPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSV 424 (515)
Q Consensus 345 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~ 424 (515)
.++.+..++...+.+.+.....+....+..|.+|++.|+++.|+.+...++|..++|.+.+.+.+ .+|+..|.+.+++
T Consensus 93 -~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~ 170 (395)
T PRK10054 93 -VNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAIC 170 (395)
T ss_pred -HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHH
Confidence 23344444444444444455566777888999999999999999999999999999999998875 7898888888777
Q ss_pred HHHHHHHHHHHhhcc
Q psy15227 425 HFCSVVFNYFYLMET 439 (515)
Q Consensus 425 ~~~~~~~~~~~~~~~ 439 (515)
.++..++..+..++.
T Consensus 171 ~~i~~i~~~~~~~~~ 185 (395)
T PRK10054 171 SAFPLVFIQIWVQRS 185 (395)
T ss_pred HHHHHHHHHHHHhcc
Confidence 777655554445443
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.5e-12 Score=128.14 Aligned_cols=163 Identities=18% Similarity=0.106 Sum_probs=132.5
Q ss_pred hHHHHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCC
Q psy15227 269 ITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNF 348 (515)
Q Consensus 269 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (515)
........|.+.++.|.++.+.+.......++..++.++.|+++||+|||+.+..+..+..++.+.... .++
T Consensus 31 ~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--------~~~ 102 (406)
T PRK11551 31 LQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQ--------AWD 102 (406)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHH--------hcc
Confidence 445566667888888998888999999999999999999999999999999999888777777666555 445
Q ss_pred ccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHH
Q psy15227 349 QYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCS 428 (515)
Q Consensus 349 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~ 428 (515)
.+...+..++.+.+.+...+....++.|.+|+++|+++.++.+....+|..+++.+.+.+.+..+|+..+++.+++.++.
T Consensus 103 ~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (406)
T PRK11551 103 FPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLL 182 (406)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHH
Confidence 56666666777777666667778899999999999999999999999999999999888888889998888877666665
Q ss_pred HHHHHHHhhcc
Q psy15227 429 VVFNYFYLMET 439 (515)
Q Consensus 429 ~~~~~~~~~~~ 439 (515)
.++.....||+
T Consensus 183 ~~~~~~~l~~~ 193 (406)
T PRK11551 183 VPLLMRWLPES 193 (406)
T ss_pred HHHHHHhCCCC
Confidence 55544455554
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.2e-13 Score=134.17 Aligned_cols=163 Identities=11% Similarity=0.027 Sum_probs=133.1
Q ss_pred hHHHHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCC
Q psy15227 269 ITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNF 348 (515)
Q Consensus 269 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (515)
...+....|.+.++.|.+..+.+...+...++..++.++.|+++||+|||+.+..+..+..++.+++.. .++
T Consensus 11 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--------~~~ 82 (379)
T TIGR00881 11 RKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGF--------STS 82 (379)
T ss_pred HHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHH--------hhh
Confidence 345556677777888999889999999999999999999999999999999999998888888877766 345
Q ss_pred ccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHH-HHHHHHHhhhchhHHHHHHHHHHHH
Q psy15227 349 QYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITT-KFHILITKSLGQHVIFFIYSSVHFC 427 (515)
Q Consensus 349 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~-~~~g~l~~~~g~~~~~~~~~~~~~~ 427 (515)
.+..++...+.+++.+...+...+++.|.+|+++|+++.++.+....+|..++| .+.+.+.+..+|+..+++.+++.++
T Consensus 83 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (379)
T TIGR00881 83 LWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAII 162 (379)
T ss_pred HHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence 566666666677666777788888999999999999999999999999999999 4666677778999888888877776
Q ss_pred HHHHHHHHhhcc
Q psy15227 428 SVVFNYFYLMET 439 (515)
Q Consensus 428 ~~~~~~~~~~~~ 439 (515)
..++.++..+++
T Consensus 163 ~~~~~~~~~~~~ 174 (379)
T TIGR00881 163 VSLICFLLLRDS 174 (379)
T ss_pred HHHHHheeeCCC
Confidence 666655555544
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.2e-12 Score=131.86 Aligned_cols=161 Identities=14% Similarity=0.070 Sum_probs=126.7
Q ss_pred HHHHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCCc
Q psy15227 270 TSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQ 349 (515)
Q Consensus 270 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (515)
..+....|.+..+.+.+..+.+.+.+...++.+++.++.|+++||+|||+.++++.++.+++.++..+ .++.
T Consensus 184 ~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~af--------a~s~ 255 (742)
T TIGR01299 184 FVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSF--------VQGY 255 (742)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH--------HhhH
Confidence 34555667777778888778888899999999999999999999999999999988887777766655 3445
Q ss_pred cHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhh-------------chhH
Q psy15227 350 YIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSL-------------GQHV 416 (515)
Q Consensus 350 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~-------------g~~~ 416 (515)
+..+++-++.+++.++..+...+++.|.+|++.|+...++...+..+|.++++.+...+.... +|+.
T Consensus 256 ~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~ 335 (742)
T TIGR01299 256 GFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRV 335 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHH
Confidence 666677777888777777888999999999999999999999999999999998877666543 4666
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Q psy15227 417 IFFIYSSVHFCSVVFNYFYLMET 439 (515)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~ 439 (515)
.+++.++.+++.. +..+++||+
T Consensus 336 l~~i~~lp~ll~l-l~~~~lPES 357 (742)
T TIGR01299 336 FVIVCAFPCVFAI-GALTFMPES 357 (742)
T ss_pred HHHHHHHHHHHHH-HHHHHcCCC
Confidence 6666555544443 344566765
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.9e-12 Score=130.65 Aligned_cols=177 Identities=14% Similarity=0.011 Sum_probs=143.9
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHH
Q psy15227 255 TLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFS 334 (515)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~ 334 (515)
+...++..+...........-.|.+.++.+.+..+.++....+.++...+.+..|+++||+|||+.+..+..+..++.+.
T Consensus 8 ~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~ 87 (495)
T PRK14995 8 LVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLA 87 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 34444444444445566777789999999988788899999999999999999999999999999999999999998888
Q ss_pred HHHHHHhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccc-cchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy15227 335 TGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELF-PINVRCQASSCASVALAFGSFITTKFHILITKSLG 413 (515)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~g 413 (515)
++. .++.+..++.-.+.+++.+...+.....+.+.+ |+++|+++.|+......+|..++|.+.+.+.++.|
T Consensus 88 ~~~--------a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~g 159 (495)
T PRK14995 88 AAF--------SPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFY 159 (495)
T ss_pred HHH--------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 877 566677777777778777666666556665554 77899999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcc
Q psy15227 414 QHVIFFIYSSVHFCSVVFNYFYLMET 439 (515)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (515)
|++.|++...++++..++..+..|+.
T Consensus 160 wr~~f~i~~~~~~~~~~l~~~~l~~~ 185 (495)
T PRK14995 160 WGSVFLINVPIVLVVMGLTARYVPRQ 185 (495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 99999988877777766665666654
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.9e-12 Score=126.43 Aligned_cols=163 Identities=10% Similarity=0.084 Sum_probs=135.0
Q ss_pred hHHHHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCC
Q psy15227 269 ITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNF 348 (515)
Q Consensus 269 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (515)
........|.+.++.|.+..+.+...+...++..++.++.|++.||+|||+.+..+..+.+++.++... .++
T Consensus 19 ~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~--------~~~ 90 (382)
T PRK10091 19 EFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTL--------SSS 90 (382)
T ss_pred HHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHH--------hCc
Confidence 345556778888888988888999999999999999999999999999999999999988888877766 555
Q ss_pred ccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHH
Q psy15227 349 QYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCS 428 (515)
Q Consensus 349 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~ 428 (515)
.+..++...+.+.+.+...+.......|.+|+++|+.+.+.......++..++|.+.+.+.+..+|+..|.+.++..++.
T Consensus 91 ~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~ 170 (382)
T PRK10091 91 YLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAV 170 (382)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHH
Confidence 66666677777776655556666788899999999999999999999999999999999999999999999988877766
Q ss_pred HHHHHHHhhcc
Q psy15227 429 VVFNYFYLMET 439 (515)
Q Consensus 429 ~~~~~~~~~~~ 439 (515)
.+..+...||.
T Consensus 171 ~~~~~~~lp~~ 181 (382)
T PRK10091 171 LASIYFWVPDI 181 (382)
T ss_pred HHHHHHhCCCC
Confidence 65554455553
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.4e-12 Score=124.42 Aligned_cols=164 Identities=19% Similarity=0.170 Sum_probs=126.4
Q ss_pred hchHHHHHHHHhhhcccCCCCCCc-----chhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHh
Q psy15227 267 GGITSMITYSSTLLPKLDNAYFGP-----DQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLY 341 (515)
Q Consensus 267 ~~~~~~~~~~~~~~~~~g~~~~~~-----~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~ 341 (515)
.+......+.|.+.++.|.+..+. +.......+...++.++.|+++||+|||+.+..+....+++..++..
T Consensus 28 ~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~---- 103 (408)
T PRK09874 28 AAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGL---- 103 (408)
T ss_pred HHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHH----
Confidence 344556667888888888775443 66777788889999999999999999999998888777777666554
Q ss_pred hCCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHH
Q psy15227 342 QGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIY 421 (515)
Q Consensus 342 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~ 421 (515)
.++.+..++...+.+++. +..+....++.+.+|+++|+.+.++.+....+|..++|.+.+.+.+..+|+..+++.
T Consensus 104 ----~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 178 (408)
T PRK09874 104 ----AQNIWQFLILRALLGLLG-GFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFIT 178 (408)
T ss_pred ----HhhHHHHHHHHHHHHHhh-hhHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 334445555555555443 344666677888899999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHhhcc
Q psy15227 422 SSVHFCSVVFNYFYLMET 439 (515)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~ 439 (515)
+++.++..+...+..+++
T Consensus 179 ~~~~~~~~~~~~~~~~~~ 196 (408)
T PRK09874 179 ASVLFLCFLVTLFCIREN 196 (408)
T ss_pred HHHHHHHHHHHHHHhccC
Confidence 888777766665555554
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.3e-12 Score=128.99 Aligned_cols=169 Identities=13% Similarity=0.098 Sum_probs=136.8
Q ss_pred HHHHhhchHHHHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHh
Q psy15227 262 LFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLY 341 (515)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~ 341 (515)
.+.............|.+.++.|.+..+.+.......++..++.++.|+++||+|||+.+..+..+..++.+.+..
T Consensus 19 ~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~---- 94 (471)
T PRK10504 19 FFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCAL---- 94 (471)
T ss_pred HHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH----
Confidence 3333344556677889999999998778888888888888999999999999999999998887777777666554
Q ss_pred hCCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHH
Q psy15227 342 QGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIY 421 (515)
Q Consensus 342 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~ 421 (515)
.++.+..++...+.+++.+...+...+++.|.+|+++|+++.|+.+....+|..++|.+.|.+.++.||+..|.+.
T Consensus 95 ----~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~ 170 (471)
T PRK10504 95 ----SGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLIN 170 (471)
T ss_pred ----hCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHH
Confidence 3445566666777777777677788888999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHhhc
Q psy15227 422 SSVHFCSVVFNYFYLME 438 (515)
Q Consensus 422 ~~~~~~~~~~~~~~~~~ 438 (515)
.....++.+......++
T Consensus 171 ~~~~~l~~~~~~~~~~~ 187 (471)
T PRK10504 171 IPVGIIGAIATLMLMPN 187 (471)
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 77777666665444443
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.1e-12 Score=127.77 Aligned_cols=162 Identities=16% Similarity=0.161 Sum_probs=132.9
Q ss_pred hHHHHHHHH-hhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCC
Q psy15227 269 ITSMITYSS-TLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPN 347 (515)
Q Consensus 269 ~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (515)
........| .+.++.|.+..+.+...+...++..++.++.|+++||+|||+.+..+..+.+++.+...+ .+
T Consensus 12 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~--------~~ 83 (352)
T PF07690_consen 12 FSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAF--------AS 83 (352)
T ss_dssp HHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH--------HC
T ss_pred HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhh--------hh
Confidence 344555666 667778989899999999999999999999999999999999999998888888444443 23
Q ss_pred CccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHH
Q psy15227 348 FQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFC 427 (515)
Q Consensus 348 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~ 427 (515)
+.+..++..++.+++.....+....++.|.+|+++|+++.++......+|..++|.+.+.+.+..+|+..+++.+++.++
T Consensus 84 ~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~ 163 (352)
T PF07690_consen 84 NFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLI 163 (352)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHH
T ss_pred hHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhh
Confidence 34566677777777777778888899999999999999999999999999999999999999889999999999999888
Q ss_pred HHHHHHHHhhc
Q psy15227 428 SVVFNYFYLME 438 (515)
Q Consensus 428 ~~~~~~~~~~~ 438 (515)
..++...+.++
T Consensus 164 ~~il~~~~~~~ 174 (352)
T PF07690_consen 164 AAILFILFLPE 174 (352)
T ss_dssp HHHHHHCCC--
T ss_pred hhhhHhhhhhh
Confidence 87754344433
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=6.4e-12 Score=126.80 Aligned_cols=163 Identities=10% Similarity=-0.014 Sum_probs=119.4
Q ss_pred HHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCCccH
Q psy15227 272 MITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYI 351 (515)
Q Consensus 272 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (515)
+....|.+.++ |.+..+.+...+...++..++.++.|+++||+|||+++..+.++.+++.+.+.+... ...+.+.
T Consensus 48 ~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~----~~~~~~~ 122 (452)
T PRK11273 48 FALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPW----ATSSIAV 122 (452)
T ss_pred HHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhc----ccccHHH
Confidence 44566776666 988889999999999999999999999999999999999988888877776655211 0122334
Q ss_pred HHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHH-HHHHHHHHHhhhchhHHHHHHHHHHHHHHH
Q psy15227 352 PYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFI-TTKFHILITKSLGQHVIFFIYSSVHFCSVV 430 (515)
Q Consensus 352 ~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~-~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 430 (515)
.++...+.+++.+...+.....+.|.+|+++|+++.|+.+....+|+.+ +|.....+....+|+..|++.+++.++..+
T Consensus 123 ~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~ 202 (452)
T PRK11273 123 MFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVAL 202 (452)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 4444555666555555655677889999999999999999999988754 444333333345899889888877777666
Q ss_pred HHHHHhhcc
Q psy15227 431 FNYFYLMET 439 (515)
Q Consensus 431 ~~~~~~~~~ 439 (515)
+..++.||+
T Consensus 203 l~~~~~~~~ 211 (452)
T PRK11273 203 FAFAMMRDT 211 (452)
T ss_pred HHHHHccCC
Confidence 665666654
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.4e-11 Score=114.29 Aligned_cols=335 Identities=13% Similarity=0.128 Sum_probs=215.2
Q ss_pred cchhhHH-HHHHHHHHHhhhhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHhhhhhhhcccchh
Q psy15227 53 LNKYQLS-WMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALLCLPTWFLVVSN-KIECLYIARLFIGISKGVAYTAMP 130 (515)
Q Consensus 53 ~s~~~~~-~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~ 130 (515)
+++.|+. -+.-...-.+....++...+.|..|.|++++++.+...+...+..+. +...+-+..+.-|++.+. ..+-+
T Consensus 37 ~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~a~-evay~ 115 (412)
T PF01770_consen 37 FTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLATAA-EVAYY 115 (412)
T ss_pred CCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHH-HHHHH
Confidence 7887774 56666777788899999999999999999999999999999999999 999999999999999886 47778
Q ss_pred hhhhcccccccccccccccchhhhHHHHHHHHHhhHH------HhHHHHHhhhHHHHHHHHHhhcccCcchhhhhcCChh
Q psy15227 131 IFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHV------SYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLK 204 (515)
Q Consensus 131 ~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~l------~wr~~f~i~~~~~~~~~~~~~~~pesp~~~~~~~~~~ 204 (515)
+++-...|+++-.++.+...++.-+|..++..+++.+ +++...++......+.++..+++|..++-..-+++.+
T Consensus 116 sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~~~~S~~f~r~~~ 195 (412)
T PF01770_consen 116 SYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPMPKRSLFFHRKPP 195 (412)
T ss_pred HHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCcccceeccCc
Confidence 8999999999888999888888888888888888766 5666766766666666667777887665332222221
Q ss_pred HHHHHHHhhcCCCcC-hHHHHHHHHHHhh-hhhhc-------hhhhhhhhccccchhHHHHHHHHHHHHHhhchHHHHHH
Q psy15227 205 KTEKSLKWYRGNKKD-VMEEMNSIMDKTQ-EDLKS-------KTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITY 275 (515)
Q Consensus 205 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (515)
+... ..+...++.+ .+++..+..+..+ .+... ...+++..+++ .+....++.....+++.....|
T Consensus 196 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~-----~ll~WSlWWa~atcgy~qv~nY 269 (412)
T PF01770_consen 196 AEQD-ANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNP-----RLLLWSLWWAFATCGYYQVINY 269 (412)
T ss_pred cccc-cccccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCc-----hHHHHHHHHHHHHhHHHHHHHH
Confidence 1110 0000000000 0000000000000 00001 11223333333 3334455555556667777778
Q ss_pred HHhhhccc---CCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHH--hhHHHHHHHHHHHHHHHhhCCCCCCcc
Q psy15227 276 SSTLLPKL---DNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCF--SAALGCLLTFSTGLFYLYQGELPNFQY 350 (515)
Q Consensus 276 ~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (515)
...+.++. +....-.|..-....+.+.++.+..|++..++.+-..+.. ...+.+..++++.. .++.|
T Consensus 270 vQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~--------t~~Iw 341 (412)
T PF01770_consen 270 VQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSF--------TGNIW 341 (412)
T ss_pred HHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHH--------hhHHH
Confidence 77777665 2222344555666677777788888888555554333332 22333333333333 56778
Q ss_pred HHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHH
Q psy15227 351 IPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITT 402 (515)
Q Consensus 351 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~ 402 (515)
...+..+++...+....++...-++.....+.-|..+|+.++...+-+.+..
T Consensus 342 v~Y~~yIif~~~y~fliTiA~~qIA~~l~~e~yaLVFGiNtf~Al~LQtilT 393 (412)
T PF01770_consen 342 VCYAGYIIFRSLYMFLITIASFQIAKNLSEERYALVFGINTFVALVLQTILT 393 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeeeHHHHHHHHHHheE
Confidence 8888888888888555565556666666777778888887776666555544
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.2e-11 Score=123.10 Aligned_cols=157 Identities=15% Similarity=0.103 Sum_probs=126.6
Q ss_pred HHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCCccHHHH
Q psy15227 275 YSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYI 354 (515)
Q Consensus 275 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (515)
-.|.+.++.+.+..+.+...+...++..++.++.|+++||+|||+++..+..+.+++.+.... .++.+..++
T Consensus 38 ~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~--------a~~~~~l~~ 109 (413)
T PRK15403 38 GIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLF--------TTSMTQFLI 109 (413)
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHH--------cCCHHHHHH
Confidence 334555667888778888888899999999999999999999999999988888887777665 455566666
Q ss_pred HHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHH
Q psy15227 355 TTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFNYF 434 (515)
Q Consensus 355 ~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 434 (515)
.-++.+++.....+....+..|.+|+++++++.++.+....++..++|.+.+.+.+..||+..|++.++..+++.+..++
T Consensus 110 ~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~ 189 (413)
T PRK15403 110 ARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLL 189 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666544445556788899999999999999999999999999999999998889999999988887777665545
Q ss_pred Hhhcc
Q psy15227 435 YLMET 439 (515)
Q Consensus 435 ~~~~~ 439 (515)
..||+
T Consensus 190 ~lp~~ 194 (413)
T PRK15403 190 AMPET 194 (413)
T ss_pred hCCCC
Confidence 55654
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.4e-11 Score=122.12 Aligned_cols=162 Identities=14% Similarity=0.128 Sum_probs=127.1
Q ss_pred HHHHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCCc
Q psy15227 270 TSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQ 349 (515)
Q Consensus 270 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (515)
.......|.+.++.+.++.+.+.......++..++.++.|+++||+|||+.+..+.....++.+.... .++.
T Consensus 25 ~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~--------~~~~ 96 (394)
T PRK11652 25 TIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALF--------AHSL 96 (394)
T ss_pred HHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHH--------HccH
Confidence 33444467778888999889999999999999999999999999999999998888877777766554 3444
Q ss_pred cHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHH
Q psy15227 350 YIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSV 429 (515)
Q Consensus 350 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 429 (515)
+..++...+.+++.+...+....+..|.++.+.++.+.+..+....++..++|.+.+.+.+..||+..+.+.++..++..
T Consensus 97 ~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~ 176 (394)
T PRK11652 97 TVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVT 176 (394)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence 55555555666555444556667788888989999999999999999999999999999998999999988877766655
Q ss_pred HHHHHHhhcc
Q psy15227 430 VFNYFYLMET 439 (515)
Q Consensus 430 ~~~~~~~~~~ 439 (515)
+...+..||+
T Consensus 177 ~~~~~~~~~~ 186 (394)
T PRK11652 177 FSMARWMPET 186 (394)
T ss_pred HHHHHhCCcc
Confidence 5544555554
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.8e-11 Score=124.03 Aligned_cols=159 Identities=13% Similarity=0.056 Sum_probs=118.8
Q ss_pred chHHHHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCC
Q psy15227 268 GITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPN 347 (515)
Q Consensus 268 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (515)
.......+.|.+.++.|.+..+.+...+...++..++.++.|+++||+|||+.+..+.++.+++.++.+. ..
T Consensus 51 ~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~--------~~ 122 (476)
T PLN00028 51 STFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSL--------VS 122 (476)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH--------hc
Confidence 3445556677888888998788888888888889999999999999999999988888777777666555 33
Q ss_pred CccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHh---------hhchhHHH
Q psy15227 348 FQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITK---------SLGQHVIF 418 (515)
Q Consensus 348 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~---------~~g~~~~~ 418 (515)
+.+..++..++.+++.....+ ...+++|.+|++.|+.+.|+.+...++|..+++.+.+.+.+ ..||+..|
T Consensus 123 s~~~l~~~r~l~G~~~~~~~~-~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f 201 (476)
T PLN00028 123 SATGFIAVRFFIGFSLATFVS-CQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAF 201 (476)
T ss_pred CHHHHHHHHHHHHHHHHhhHH-HHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHH
Confidence 444444455555655543333 34578899999999999999988888888887776655432 24899999
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy15227 419 FIYSSVHFCSVVFNYFY 435 (515)
Q Consensus 419 ~~~~~~~~~~~~~~~~~ 435 (515)
++.+++.++..+..+++
T Consensus 202 ~i~g~l~l~~~l~~~~~ 218 (476)
T PLN00028 202 FVPGLLHIIMGILVLTL 218 (476)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99888887776665443
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.4e-12 Score=123.08 Aligned_cols=161 Identities=12% Similarity=0.004 Sum_probs=128.5
Q ss_pred hHHHHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCC
Q psy15227 269 ITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNF 348 (515)
Q Consensus 269 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (515)
........|.+..+.+.+..+.+.......++..++.++.|+++||+|||+.+..+..+..++..+........ ..+
T Consensus 15 ~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 91 (365)
T TIGR00900 15 TAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLG---GLN 91 (365)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcC---CCc
Confidence 34455566777777788778888999999999999999999999999999999988887777766655533210 124
Q ss_pred ccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHH
Q psy15227 349 QYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCS 428 (515)
Q Consensus 349 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~ 428 (515)
.+..++...+.+++.+...+...+++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..||+..+++.++..+++
T Consensus 92 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~ 171 (365)
T TIGR00900 92 IWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAIS 171 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 55566666666766666777788999999999999999999999999999999999999999999998888877766655
Q ss_pred HHHH
Q psy15227 429 VVFN 432 (515)
Q Consensus 429 ~~~~ 432 (515)
.+..
T Consensus 172 ~~~~ 175 (365)
T TIGR00900 172 ALLI 175 (365)
T ss_pred HHHH
Confidence 4443
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=9.8e-12 Score=124.70 Aligned_cols=156 Identities=16% Similarity=0.113 Sum_probs=127.4
Q ss_pred HHHHHHHhhchHHHHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHH
Q psy15227 259 AASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLF 338 (515)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~ 338 (515)
.+................|.+.++.|.++.+.+...+...++..++.++.|+++||+|||+.+..+....+++.+....
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~- 102 (426)
T PRK12307 24 WLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGL- 102 (426)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH-
Confidence 3333333334455556667777788988888899999999999999999999999999999999999988888877666
Q ss_pred HHhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhchhHHH
Q psy15227 339 YLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIF 418 (515)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~ 418 (515)
.++.+...+.-.+.+++.+...+....++.|.+|+++|+++.++......+|..+++.+.+.+.+..+|+..+
T Consensus 103 -------~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f 175 (426)
T PRK12307 103 -------ASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAF 175 (426)
T ss_pred -------HhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHH
Confidence 3445666666777777776677777889999999999999999999999999999999999998989999888
Q ss_pred HHHH
Q psy15227 419 FIYS 422 (515)
Q Consensus 419 ~~~~ 422 (515)
++..
T Consensus 176 ~i~~ 179 (426)
T PRK12307 176 FVGL 179 (426)
T ss_pred HHHH
Confidence 7643
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.38 E-value=8.6e-12 Score=126.54 Aligned_cols=151 Identities=9% Similarity=0.047 Sum_probs=122.3
Q ss_pred ccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHH
Q psy15227 282 KLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAA 361 (515)
Q Consensus 282 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 361 (515)
+.+.+..+.+.......++..++.++.|+++||+|||+.+..+.++..++.++..... ....+..++.-++.++
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~------~~~~~~l~~~r~~~G~ 143 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAA------GGGIALVVFCRVIQGL 143 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHH------HcCchHHHHHHHHHHH
Confidence 4567777788889999999999999999999999999999888887777766654321 2233455556667777
Q ss_pred HHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhh-chhHHHHHHHHHHHHHHHHHHHHhhc
Q psy15227 362 SYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSL-GQHVIFFIYSSVHFCSVVFNYFYLME 438 (515)
Q Consensus 362 ~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (515)
+.+...+....+++|.+|+++|+++.|+.+....+|..+++.+.+.+.+.. ||+..|++.++..++..++.+...++
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~ 221 (465)
T TIGR00894 144 AQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPAD 221 (465)
T ss_pred hcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcC
Confidence 777888888899999999999999999999999999999999999999984 99999999888777666655444443
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.3e-11 Score=124.37 Aligned_cols=157 Identities=11% Similarity=0.108 Sum_probs=120.9
Q ss_pred HHHHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCCc
Q psy15227 270 TSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQ 349 (515)
Q Consensus 270 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (515)
.....+.+.+.++.|.+..+.+...+...+...++.++.|+++||+|||+.+..+..+..++.+.++. .++.
T Consensus 36 ~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~--------~~~~ 107 (455)
T TIGR00892 36 KAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASF--------SSNV 107 (455)
T ss_pred cchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHH--------hhhH
Confidence 34556678888888998888888888888888999999999999999999999888887777766655 2333
Q ss_pred cHHHHHH-HHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHH
Q psy15227 350 YIPYITT-LLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCS 428 (515)
Q Consensus 350 ~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~ 428 (515)
+..+... ++.+++.+...+.....+.+.+| ++|+++.|+.+....+|..++|.+.+.+.+..||+.+|++.+++.+++
T Consensus 108 ~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~ 186 (455)
T TIGR00892 108 IELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHC 186 (455)
T ss_pred HHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 3333222 34455543333444567778886 689999999999999999999999999999999999999998887766
Q ss_pred HHHHHHH
Q psy15227 429 VVFNYFY 435 (515)
Q Consensus 429 ~~~~~~~ 435 (515)
.+..++.
T Consensus 187 ~v~~~~~ 193 (455)
T TIGR00892 187 CVCGALM 193 (455)
T ss_pred HHHHHHh
Confidence 5554333
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=9.5e-12 Score=123.91 Aligned_cols=162 Identities=12% Similarity=0.095 Sum_probs=127.4
Q ss_pred HHHHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCCc
Q psy15227 270 TSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQ 349 (515)
Q Consensus 270 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (515)
..+....|.+.++.+.+..+.+.......++..++.++.|+++||+|||+.+..+.....++...... .++.
T Consensus 30 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~--------~~~~ 101 (406)
T PRK15402 30 DMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILL--------AQSI 101 (406)
T ss_pred hhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH--------HccH
Confidence 33444456677788888788888888999999999999999999999999998888887777766655 3444
Q ss_pred cHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHH
Q psy15227 350 YIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSV 429 (515)
Q Consensus 350 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 429 (515)
+..++...+.+.+.....+.....+.|.+|++.|.++.++......++..++|.+.+.+.+..+|+..+++.+++.+++.
T Consensus 102 ~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~ 181 (406)
T PRK15402 102 EQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSF 181 (406)
T ss_pred HHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHH
Confidence 55555555556555555566678889999999999999998888889999999999999998999999988888877766
Q ss_pred HHHHHHhhcc
Q psy15227 430 VFNYFYLMET 439 (515)
Q Consensus 430 ~~~~~~~~~~ 439 (515)
+..+...||+
T Consensus 182 ~~~~~~~~~~ 191 (406)
T PRK15402 182 FGLWRAMPET 191 (406)
T ss_pred HHHHHhCCCC
Confidence 6554445554
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.8e-11 Score=121.37 Aligned_cols=160 Identities=12% Similarity=0.054 Sum_probs=127.7
Q ss_pred HHHHHHHHhh-hcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCC
Q psy15227 270 TSMITYSSTL-LPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNF 348 (515)
Q Consensus 270 ~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (515)
.....+.+.+ .++.|.+..+.+.......+...+..++.|+++||+|||+.+..+..+.+++.+.+.. .++
T Consensus 27 ~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~--------~~~ 98 (400)
T PRK11646 27 FVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAI--------AHE 98 (400)
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHH--------hcc
Confidence 4444555554 4567988888999998888999999999999999999999999999988888887765 344
Q ss_pred ccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHH
Q psy15227 349 QYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCS 428 (515)
Q Consensus 349 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~ 428 (515)
.+..++...+.+++.+...|...+++.|.+|+++|+++.|+.+....+|..++|.+.+.+. ..||+..|++.+...++.
T Consensus 99 ~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~ 177 (400)
T PRK11646 99 PWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLA 177 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHH
Confidence 5555666666666655566777788999999999999999999999999999999999998 689998888887777666
Q ss_pred HHHHHHHhhc
Q psy15227 429 VVFNYFYLME 438 (515)
Q Consensus 429 ~~~~~~~~~~ 438 (515)
.++.....++
T Consensus 178 ~i~~~~~~~~ 187 (400)
T PRK11646 178 AAFNAWLLPA 187 (400)
T ss_pred HHHHHHhCCc
Confidence 5554444443
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.37 E-value=8e-12 Score=124.17 Aligned_cols=347 Identities=15% Similarity=0.129 Sum_probs=196.4
Q ss_pred hhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhhh-----hhHHHHHHHHHHHHHHHHHHhh---
Q psy15227 35 MIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIG-----RKTTLLLNALLCLPTWFLVVSN--- 106 (515)
Q Consensus 35 ~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~G-----rr~~l~~~~~l~~i~~~~~~~~--- 106 (515)
..|.+.+ +++ +++++...+.+...+...+- ++.|.++|.+- ||+-++++.++..++.+..+..
T Consensus 12 ~~~~l~~---~l~-----ls~~~~~~~~~~~~lPw~~K-p~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~ 82 (433)
T PF03092_consen 12 IYPFLKD---DLG-----LSPAQLQRLSSLASLPWSIK-PLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPAS 82 (433)
T ss_pred HHHHHHH---HcC-----CCHHHHHHHHHHHhCchHHh-hhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccc
Confidence 3444444 588 99999999988888887765 78899999863 5566666777776555555543
Q ss_pred --hhhHHHHHHHHhhhhhhhcccchhhhhhccccc--ccccccccccchhhhHHHHHHHHHhhHH----HhHHHHHhhhH
Q psy15227 107 --KIECLYIARLFIGISKGVAYTAMPIFIGEISEH--NIRGALGSIPSGFQMVGTLAILLIGNHV----SYNSLNIALSI 178 (515)
Q Consensus 107 --~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~--~~r~~~~~~~~~~~~lG~~~~~~l~~~l----~wr~~f~i~~~ 178 (515)
+.....+.-++..+|.+..-.++.+++.|...+ ++||...+.......+|.+++..+++.+ ++|..|.+.+.
T Consensus 83 ~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~ 162 (433)
T PF03092_consen 83 ESSAAIAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAA 162 (433)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHH
Confidence 566677777889999999999999999998843 3366777777777788888887777665 78888988888
Q ss_pred HHHHHHHHhhc-ccCcchhhhhcCChhHHHHHHHhhcCCCcChHHHHHHHHHHhhhhhhchhhhhhhhccccchhHHHHH
Q psy15227 179 LPVIFFILFSF-VPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGYLELLTNKSNRRAFTLV 257 (515)
Q Consensus 179 ~~~~~~~~~~~-~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (515)
+.++..+..++ .+|.+.. +.++.. ...... .+... ...++.....++.++.+..++.....
T Consensus 163 ~~~l~~~~~~~~~~e~~~~-----~~~~~~----~~~~~~--~~~~~-------~~~~~~~~~l~~~~~~~~i~~~~~~~ 224 (433)
T PF03092_consen 163 LPLLMLIVALFLLEERKVR-----PADEVF----SFGKEE--VPCLF-------GSFREQLSELWRALQQRAIWQPILFF 224 (433)
T ss_pred HHHHHHHHHHHhhhhcccc-----ccchhh----cccccc--cchhh-------HHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 77766655554 4441100 000000 000000 00000 00111122344455544444433311
Q ss_pred HHHHHHHHhhchHHHHHHHHhhhcccC---CCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHH
Q psy15227 258 MAASLFQRLGGITSMITYSSTLLPKLD---NAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFS 334 (515)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~ 334 (515)
.++........ ....+|. ..+..+ +++...+....+..++.++|..+......+..-|+++....++..+..+.
T Consensus 225 ~~~~~~~~~~~-~a~~fy~--~~~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~ 301 (433)
T PF03092_consen 225 IFFFNLPPSIS-SASSFYF--QTDALGGPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLF 301 (433)
T ss_pred HHHHHhccCCC-CccEEEE--EeccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcc
Confidence 11111100000 0100110 011123 34334444444555555666665555555556666665555444333222
Q ss_pred HHHHHHhhC---CCCCCccHHHHHHHHHHHHH-hcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q psy15227 335 TGLFYLYQG---ELPNFQYIPYITTLLYAASY-YGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITK 410 (515)
Q Consensus 335 ~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~ 410 (515)
-.......+ ..++. +..+.-..+..... ....|.. .+.+|+.|+..-|+..++...+.++|..++..+...+.+
T Consensus 302 ~~~lv~~~n~~~Gi~d~-~f~lgd~~l~~~~~~i~~mP~l-vl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~ 379 (433)
T PF03092_consen 302 DLLLVTRWNLDLGIPDQ-WFALGDTILEEVIGMIAFMPSL-VLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLME 379 (433)
T ss_pred cEEEEEEEeeeeCcCCe-EEEEEhHHHHHHHHHHHHHHHH-HHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111110000 00122 33333333333333 4444543 678999999999999999999999999999999988887
Q ss_pred hhc
Q psy15227 411 SLG 413 (515)
Q Consensus 411 ~~g 413 (515)
..+
T Consensus 380 ~~~ 382 (433)
T PF03092_consen 380 LFG 382 (433)
T ss_pred HcC
Confidence 665
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.1e-11 Score=121.01 Aligned_cols=162 Identities=12% Similarity=-0.062 Sum_probs=124.3
Q ss_pred HHHHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCCc
Q psy15227 270 TSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQ 349 (515)
Q Consensus 270 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (515)
..+....|.+.++.|.+..+.+...+...++..++++..|+++||+|||+++.........+.. ... . .++.
T Consensus 8 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~-~~~--~-----~~~~ 79 (368)
T TIGR00903 8 VTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAG-RLL--D-----PFNY 79 (368)
T ss_pred HHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH-HHH--H-----hccH
Confidence 3455667778888899888889999999999999999999999999999876554443333322 111 0 2344
Q ss_pred cHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHH
Q psy15227 350 YIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSV 429 (515)
Q Consensus 350 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 429 (515)
+..++.-++.+.+.+. .+......+|.+|+++|+++.++......+|..+++.+.+.+.++.||+..|.+.+++.++..
T Consensus 80 ~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~ 158 (368)
T TIGR00903 80 EWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGI 158 (368)
T ss_pred HHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH
Confidence 5566666666666643 334445668999999999999999999999999999999999999999999999888888777
Q ss_pred HHHHHHhhccc
Q psy15227 430 VFNYFYLMETK 440 (515)
Q Consensus 430 ~~~~~~~~~~~ 440 (515)
++.++..||+.
T Consensus 159 ~~~~~~lp~~p 169 (368)
T TIGR00903 159 ILVLAALPALP 169 (368)
T ss_pred HHHHHHcCCCC
Confidence 77666677643
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.1e-11 Score=123.24 Aligned_cols=157 Identities=15% Similarity=0.079 Sum_probs=127.6
Q ss_pred hchHHHHHHHHhhhcc---cCCCCCCcchhHHHHHHHHHHHHHHHHHHHhh-hCCchhHHHhhHHHHHHHHHHHHHHHhh
Q psy15227 267 GGITSMITYSSTLLPK---LDNAYFGPDQCILVFMIIMFLSNFLQAPLMDI-LGRKPLSCFSAALGCLLTFSTGLFYLYQ 342 (515)
Q Consensus 267 ~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~~~~ 342 (515)
.+++....++|.++++ .|.+..+++.......+...++.+++|+++|| +|||+++..+..+.+++.+++++
T Consensus 24 ~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~----- 98 (475)
T TIGR00924 24 FSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAM----- 98 (475)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHh-----
Confidence 3456677777877764 68888899999999999999999999999999 89999999999999888877766
Q ss_pred CCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchh---hhhhhhHHHHHHHHHHHHHHHHHHHHHhhhchhHHHH
Q psy15227 343 GELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINV---RCQASSCASVALAFGSFITTKFHILITKSLGQHVIFF 419 (515)
Q Consensus 343 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~---r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~ 419 (515)
.++.+...+...+.+.+.+...|...++.+|.+|++. |+++.++.+...++|..++|.+.+.+.++.||+..|.
T Consensus 99 ---~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~ 175 (475)
T TIGR00924 99 ---SIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFN 175 (475)
T ss_pred ---cccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHH
Confidence 3334444455555666656677787889999998754 8889999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHH
Q psy15227 420 IYSSVHFCSVVF 431 (515)
Q Consensus 420 ~~~~~~~~~~~~ 431 (515)
+.++.++++.+.
T Consensus 176 ~~~~~~~~~~l~ 187 (475)
T TIGR00924 176 LAAVGMVIGLLT 187 (475)
T ss_pred HHHHHHHHHHHH
Confidence 877655554433
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >KOG3762|consensus | Back alignment and domain information |
|---|
Probab=99.37 E-value=7.6e-12 Score=120.37 Aligned_cols=156 Identities=12% Similarity=0.058 Sum_probs=129.5
Q ss_pred hHHHHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCC
Q psy15227 269 ITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNF 348 (515)
Q Consensus 269 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (515)
.....+++-..+++.+..+.--|........+.++.-++.+++.+|+|+-+++..++.+..+-++.+.. -++
T Consensus 387 ~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~--------L~n 458 (618)
T KOG3762|consen 387 VGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSY--------LQN 458 (618)
T ss_pred HHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHH--------hcC
Confidence 344445555567777766566677777777888999999999999999999999999999888888777 677
Q ss_pred ccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHH-HHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHH
Q psy15227 349 QYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCAS-VALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFC 427 (515)
Q Consensus 349 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~-~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~ 427 (515)
+|..+..-++-++.....+....+|++...||+.|+++.++.. ....+|-.+|+.++|.+.+++|.+..|.++++.+++
T Consensus 459 ~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~ 538 (618)
T KOG3762|consen 459 PWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLV 538 (618)
T ss_pred chheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHH
Confidence 8999988999999996666777799999999999999999884 556899999999999999999999999998888877
Q ss_pred HHHHH
Q psy15227 428 SVVFN 432 (515)
Q Consensus 428 ~~~~~ 432 (515)
..+..
T Consensus 539 ~l~~~ 543 (618)
T KOG3762|consen 539 TLALF 543 (618)
T ss_pred HHHHH
Confidence 66554
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.37 E-value=7.5e-12 Score=125.79 Aligned_cols=163 Identities=11% Similarity=-0.012 Sum_probs=121.8
Q ss_pred HHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCCccH
Q psy15227 272 MITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYI 351 (515)
Q Consensus 272 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (515)
+....|.+.+ .|.++.+.+.......++..++.++.|+++||+|||+.+..+..+.+++.+.+..... ...+.+.
T Consensus 46 ~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 120 (438)
T TIGR00712 46 FALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPW----ATSSIAI 120 (438)
T ss_pred HHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhcccc----ccchHHH
Confidence 3445565554 5888889999999999999999999999999999999988888777777666543110 0112223
Q ss_pred HHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHh-hhchhHHHHHHHHHHHHHHH
Q psy15227 352 PYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITK-SLGQHVIFFIYSSVHFCSVV 430 (515)
Q Consensus 352 ~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~-~~g~~~~~~~~~~~~~~~~~ 430 (515)
..+...+.+++.+...+.....+.|.+|+++|++++|+.+....+++.+++.+.+...+ ..+|+..|++.++++++..+
T Consensus 121 l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~ 200 (438)
T TIGR00712 121 MFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVAL 200 (438)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 33444455555555556666788899999999999999999999999999988776554 46899999998888877766
Q ss_pred HHHHHhhcc
Q psy15227 431 FNYFYLMET 439 (515)
Q Consensus 431 ~~~~~~~~~ 439 (515)
..++..+|+
T Consensus 201 ~~~~~~~~~ 209 (438)
T TIGR00712 201 FAFAMMRDT 209 (438)
T ss_pred HHHHhccCC
Confidence 665666553
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.2e-11 Score=120.23 Aligned_cols=157 Identities=15% Similarity=0.083 Sum_probs=120.3
Q ss_pred chHHHHHHHHhhhcc-cCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhh-CCchhHHHhhHHHHHHHHHHHHHHHhhCCC
Q psy15227 268 GITSMITYSSTLLPK-LDNAYFGPDQCILVFMIIMFLSNFLQAPLMDIL-GRKPLSCFSAALGCLLTFSTGLFYLYQGEL 345 (515)
Q Consensus 268 ~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (515)
.++.+..++|.++.+ .|++..+++...........++.+++|+++||+ |||+.+..+.++..++.+++...
T Consensus 24 s~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~------- 96 (493)
T PRK15462 24 SFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGAS------- 96 (493)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHh-------
Confidence 456677777877755 588888888888888889899999999999999 99999999988888887655431
Q ss_pred CCCccHHHHHHHHHHHHHhcccchhhhhhcccccch--hhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHH
Q psy15227 346 PNFQYIPYITTLLYAASYYGIGCLPNILVSELFPIN--VRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSS 423 (515)
Q Consensus 346 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~--~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~ 423 (515)
........+...+...+.+...+...++++|.+|++ .|+++.++.+...++|+.++|.+.+++.+..||+..|.+.++
T Consensus 97 ~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaai 176 (493)
T PRK15462 97 EIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAV 176 (493)
T ss_pred hcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHH
Confidence 111122333333444444555566678899999976 699999999999999999999999999999999998888666
Q ss_pred HHHHHHHH
Q psy15227 424 VHFCSVVF 431 (515)
Q Consensus 424 ~~~~~~~~ 431 (515)
..+++.+.
T Consensus 177 gm~l~li~ 184 (493)
T PRK15462 177 GMIAGLVI 184 (493)
T ss_pred HHHHHHHH
Confidence 55444433
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.7e-12 Score=123.28 Aligned_cols=161 Identities=12% Similarity=0.206 Sum_probs=132.7
Q ss_pred HHHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCCcc
Q psy15227 271 SMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQY 350 (515)
Q Consensus 271 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (515)
......|.+.++.|.+..+.+...+...++..++.++.|+++||+|||+.+..+..+.+++...+.. .++.+
T Consensus 9 ~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~--------~~~~~ 80 (377)
T PRK11102 9 MYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACAL--------AQTID 80 (377)
T ss_pred HHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHH--------HccHH
Confidence 3445567777788888888899999999999999999999999999999999988888888777765 34455
Q ss_pred HHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHH
Q psy15227 351 IPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSVV 430 (515)
Q Consensus 351 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 430 (515)
...+...+.+++.....+...+++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..+|+..+.+.+.+.++..+
T Consensus 81 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 160 (377)
T PRK11102 81 QLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAA 160 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHH
Confidence 55666666676666666777789999999999999999999999999999999999999999999998888888777766
Q ss_pred HHHHHhhcc
Q psy15227 431 FNYFYLMET 439 (515)
Q Consensus 431 ~~~~~~~~~ 439 (515)
+..+..+|+
T Consensus 161 ~~~~~~~~~ 169 (377)
T PRK11102 161 LVFFFIPET 169 (377)
T ss_pred HHHHhCCcc
Confidence 655555553
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.6e-11 Score=125.72 Aligned_cols=159 Identities=16% Similarity=0.154 Sum_probs=128.2
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHH
Q psy15227 255 TLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFS 334 (515)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~ 334 (515)
+..+.+..+.............|.+.++.|.+..+.+.......++..++.++.|+++||+|||+.+..+..+.+++.+.
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~ 101 (496)
T PRK03893 22 FSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLA 101 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 33334444443344455566678888888988788888899999999999999999999999999999888888887777
Q ss_pred HHHHHHhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhch
Q psy15227 335 TGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQ 414 (515)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~ 414 (515)
... .++.+...+..++.+++..+..+....++.|.+|++.|+.+.++......+|..++|.+.+.+.+..+|
T Consensus 102 ~~~--------~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w 173 (496)
T PRK03893 102 CGF--------APGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGW 173 (496)
T ss_pred HHH--------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCH
Confidence 666 344556666666777766666777778999999999999999999999999999999999999999999
Q ss_pred hHHHHHH
Q psy15227 415 HVIFFIY 421 (515)
Q Consensus 415 ~~~~~~~ 421 (515)
+..+.+.
T Consensus 174 ~~~f~~~ 180 (496)
T PRK03893 174 RALFFIG 180 (496)
T ss_pred HHHHHHH
Confidence 9877653
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.2e-10 Score=106.56 Aligned_cols=244 Identities=17% Similarity=0.150 Sum_probs=152.3
Q ss_pred cchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhhhhcccchhhh
Q psy15227 53 LNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALLCLPTWFLVVSNKIECLYIARLFIGISKGVAYTAMPIF 132 (515)
Q Consensus 53 ~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~ 132 (515)
.++.|++.+....+...++..++.|.++||+|||+.-+..+++.+++++.--..+++.++++|++.|++.+..+.+-.++
T Consensus 66 ~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~~~~~~L~~GRvlgGiaTSLLfS~FEsW 145 (354)
T PF05631_consen 66 FSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHSSNYPVLLLGRVLGGIATSLLFSAFESW 145 (354)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999975444499999999999999999999888887
Q ss_pred hh-ccc----ccccccccccccc-hhhhHHHHHHHHHhhHH----H--hHHHHHhhhHHHHHHHHHhhc-ccCcchhhhh
Q psy15227 133 IG-EIS----EHNIRGALGSIPS-GFQMVGTLAILLIGNHV----S--YNSLNIALSILPVIFFILFSF-VPETPHFHAA 199 (515)
Q Consensus 133 i~-e~~----~~~~r~~~~~~~~-~~~~lG~~~~~~l~~~l----~--wr~~f~i~~~~~~~~~~~~~~-~pesp~~~~~ 199 (515)
.. |.- |++..+...+... ...++-.+.++.+++.+ + -..+|....++.++..++... .+|.+.-
T Consensus 146 ~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~--- 222 (354)
T PF05631_consen 146 MVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENYGD--- 222 (354)
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccccCCC---
Confidence 54 431 2222222222222 22233344445555443 2 367888887777776666543 5663210
Q ss_pred cCChhHHHHHHHhhcCCCcChHHHHHHHHHHhhhhhhchhhhhhhhccccchhHHHHHHHHHHHHHhhchHHHHHHHHhh
Q psy15227 200 KNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTL 279 (515)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (515)
..+..+ . .+.-+..++.+.+++ +++.............+.....|.|.+
T Consensus 223 ~~~~~~--------------~-------------~~~~~~a~~~i~~d~----ril~LG~~qslFE~smy~FVflWtPaL 271 (354)
T PF05631_consen 223 TSSSSS--------------L-------------SGSFREAWRAILSDP----RILLLGLIQSLFEGSMYLFVFLWTPAL 271 (354)
T ss_pred cccccc--------------h-------------HHHHHHHHHHHHcCc----hhHHHHHHHHHHHHHHHHheeeeecee
Confidence 000000 0 000011233344433 344444555555555455556677776
Q ss_pred hcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhh-hCCchhHHHhhHHHHHHH
Q psy15227 280 LPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDI-LGRKPLSCFSAALGCLLT 332 (515)
Q Consensus 280 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~grr~~~~~~~~~~~~~~ 332 (515)
-.+ + ....-|.+...+.+...+|+.+..++..+ ......+.....+.++++
T Consensus 272 ~~~-~-~~~P~GlIFssFM~a~MlGS~lf~~l~s~~~~~e~~l~~v~~~aa~~l 323 (354)
T PF05631_consen 272 DPD-D-EELPLGLIFSSFMVAMMLGSSLFSRLLSKSLRPESLLRYVFAVAAVSL 323 (354)
T ss_pred cCC-C-CCCCchHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 521 2 12457788888889999999888766554 333333333344433333
|
|
| >KOG1330|consensus | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.9e-13 Score=127.22 Aligned_cols=167 Identities=12% Similarity=0.108 Sum_probs=145.9
Q ss_pred chHHHHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCC
Q psy15227 268 GITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPN 347 (515)
Q Consensus 268 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (515)
.-+.+..-.+..-+..+.+....+++.....+...+.+++.|++.||++|++++.+|..+..++.++.++ ..
T Consensus 48 Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~f--------s~ 119 (493)
T KOG1330|consen 48 DRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGF--------SN 119 (493)
T ss_pred hhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHH--------HH
Confidence 3344444445555556888889999999999999999999999999999999999999999999998887 45
Q ss_pred CccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc-hhHHHHHHHHHHH
Q psy15227 348 FQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLG-QHVIFFIYSSVHF 426 (515)
Q Consensus 348 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~ 426 (515)
..|...++-.+.++|...+.|+..++++|.+|..+|++++++.+.+..+|..+|-.....+.+..+ |++.|...+++.+
T Consensus 120 ~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~v 199 (493)
T KOG1330|consen 120 HFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGV 199 (493)
T ss_pred HHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHH
Confidence 578888888899999999999999999999999999999999999999999999888888888777 8999999999999
Q ss_pred HHHHHHHHHhhccccc
Q psy15227 427 CSVVFNYFYLMETKQK 442 (515)
Q Consensus 427 ~~~~~~~~~~~~~~~~ 442 (515)
++.++.+++.+|+.++
T Consensus 200 i~~~L~~~f~~eP~rg 215 (493)
T KOG1330|consen 200 IVGLLVFLFVREPERG 215 (493)
T ss_pred HHHHHHHhhccCcccc
Confidence 9999988888776654
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.9e-11 Score=118.19 Aligned_cols=167 Identities=11% Similarity=0.020 Sum_probs=129.1
Q ss_pred HHHHHHHHHhhchHHHHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHH
Q psy15227 257 VMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTG 336 (515)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~ 336 (515)
...+..+.............|.+.++.+.+..+.+.......++..++.++.|++.||+|||+.+..+..+..++..+..
T Consensus 11 ~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~ 90 (394)
T PRK03699 11 ISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLM 90 (394)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333345566667888888899888889999999999999999999999999999999888888877777766
Q ss_pred HHHHhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHh-hhchh
Q psy15227 337 LFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITK-SLGQH 415 (515)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~-~~g~~ 415 (515)
. .++.+...+...+.+.+.+...+....++.|.+|+++|+.+.+..+....+++.++|.+.+.+.+ ..+|+
T Consensus 91 ~--------~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~ 162 (394)
T PRK03699 91 F--------SHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWY 162 (394)
T ss_pred H--------cchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHH
Confidence 5 44455555566666666655566667888999999999999999888889999999999888765 57899
Q ss_pred HHHHHHHHHHHHHHHH
Q psy15227 416 VIFFIYSSVHFCSVVF 431 (515)
Q Consensus 416 ~~~~~~~~~~~~~~~~ 431 (515)
..|.+.+++.++..++
T Consensus 163 ~~f~~~~~~~~~~~~~ 178 (394)
T PRK03699 163 WVYACIGLVYVAIFIL 178 (394)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9988877776665444
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=5e-11 Score=118.54 Aligned_cols=151 Identities=14% Similarity=0.149 Sum_probs=120.7
Q ss_pred HHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCCccHHHH
Q psy15227 275 YSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYI 354 (515)
Q Consensus 275 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (515)
..|.+.++.+.++.+.+...+...++..++.++.|+++||+|||+.+..+..+..++.+.... .++.+...+
T Consensus 28 ~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--------~~~~~~l~~ 99 (401)
T PRK11043 28 AFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLW--------VESAAQLLV 99 (401)
T ss_pred hHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHH--------hcCHHHHHH
Confidence 344556777888889999999999999999999999999999999998888777777666655 344555555
Q ss_pred HHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHH
Q psy15227 355 TTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFNY 433 (515)
Q Consensus 355 ~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 433 (515)
...+.+.+.....+....+..|.+|+++++...+..+....++..++|.+.+.+.+..||+..+++.+++.++..+..+
T Consensus 100 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 178 (401)
T PRK11043 100 LRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTL 178 (401)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Confidence 5556665554444555678889999998999999988889999999999999999999999888888877776655543
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.9e-12 Score=125.46 Aligned_cols=140 Identities=11% Similarity=0.123 Sum_probs=118.5
Q ss_pred cchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHhhhhhhhcccchhh
Q psy15227 53 LNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALLCLPTWFLVVSN-KIECLYIARLFIGISKGVAYTAMPI 131 (515)
Q Consensus 53 ~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~ 131 (515)
.+..+.|++.++..++..++.+++|+++||+|||+.+..+.++.+++.++.+++ +.+.+++.+++.|++.+...+....
T Consensus 259 ~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~ 338 (420)
T PRK09528 259 QGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFK 338 (420)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667788999999999999999999999999999999999999999998888888 9999999999999999888888889
Q ss_pred hhhcccccccccccccc-cchhhhHHHHHHHHHhhHH----HhHHHHHhhhHHHHHHHHHhh-cccC
Q psy15227 132 FIGEISEHNIRGALGSI-PSGFQMVGTLAILLIGNHV----SYNSLNIALSILPVIFFILFS-FVPE 192 (515)
Q Consensus 132 ~i~e~~~~~~r~~~~~~-~~~~~~lG~~~~~~l~~~l----~wr~~f~i~~~~~~~~~~~~~-~~pe 192 (515)
++.|.+|++.|+...+. ++....+|.++++.+.+.+ ||+..|.+.+++.++..+..+ .+++
T Consensus 339 ~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~ 405 (420)
T PRK09528 339 YITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSG 405 (420)
T ss_pred HHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999988887665 5666777888877777665 899999988887766555444 3444
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.8e-10 Score=116.43 Aligned_cols=150 Identities=14% Similarity=0.047 Sum_probs=111.0
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhccc
Q psy15227 288 FGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIG 367 (515)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 367 (515)
.+.+.......++.+++.++.|+++||+|||+.+..+.++..++.++...... .......+..++.-++.+++.+...
T Consensus 56 ~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~r~l~G~~~g~~~ 133 (502)
T TIGR00887 56 SVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPG--SSPKSVMATLCFWRFWLGVGIGGDY 133 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccC--cccchHHHHHHHHHHHHHHHHhhhh
Confidence 34567788888999999999999999999999998888888887766554110 0000012455666677777777777
Q ss_pred chhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHh-----------------------hhchhHHHHHHHHH
Q psy15227 368 CLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITK-----------------------SLGQHVIFFIYSSV 424 (515)
Q Consensus 368 ~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~-----------------------~~g~~~~~~~~~~~ 424 (515)
+...++++|.+|++.|+++.++.+....+|..+++.+...+.. ..+|+..+.+.++.
T Consensus 134 ~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip 213 (502)
T TIGR00887 134 PLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVP 213 (502)
T ss_pred HHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHH
Confidence 8888999999999999999999999999999999888765432 23788888665555
Q ss_pred HHHHHHHHHHHhhccc
Q psy15227 425 HFCSVVFNYFYLMETK 440 (515)
Q Consensus 425 ~~~~~~~~~~~~~~~~ 440 (515)
.++..+. .+++||+.
T Consensus 214 ~~i~~~~-~~~lpESp 228 (502)
T TIGR00887 214 ALLALYF-RLTIPETP 228 (502)
T ss_pred HHHHHHH-HHhCCCCH
Confidence 5444333 35667763
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.3e-11 Score=120.47 Aligned_cols=160 Identities=13% Similarity=0.007 Sum_probs=120.9
Q ss_pred hHHHHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCC
Q psy15227 269 ITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNF 348 (515)
Q Consensus 269 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (515)
........|.+.++.+.++.+.+.......+...+++++.|+++||+|||+.+..+..+.+++...+....... .++
T Consensus 33 ~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~ 109 (417)
T PRK10489 33 LGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLP---EPS 109 (417)
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcC---CCc
Confidence 45566677888777777778889999999999999999999999999999998887777666655544321100 223
Q ss_pred ccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHH
Q psy15227 349 QYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCS 428 (515)
Q Consensus 349 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~ 428 (515)
.+...+..++.+++.+...+...+++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..++++.+.+.++..++.
T Consensus 110 ~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~ 189 (417)
T PRK10489 110 LLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFIT 189 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34444444455555444456666788999999999999999999999999999999999999889988887766665555
Q ss_pred HHH
Q psy15227 429 VVF 431 (515)
Q Consensus 429 ~~~ 431 (515)
.++
T Consensus 190 ~~~ 192 (417)
T PRK10489 190 LLP 192 (417)
T ss_pred HHH
Confidence 443
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.8e-11 Score=117.07 Aligned_cols=162 Identities=13% Similarity=0.042 Sum_probs=120.2
Q ss_pred chHHHHHHHHh-hhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCC
Q psy15227 268 GITSMITYSST-LLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELP 346 (515)
Q Consensus 268 ~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (515)
.......+.|. +.++.|.+..+.+.......++..++.++.|+++||+|||+.+..+..+..++.+.+.. .
T Consensus 16 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~--------~ 87 (366)
T TIGR00886 16 VWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGL--------A 87 (366)
T ss_pred HHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHH--------H
Confidence 34556677775 66778999889999999999999999999999999999999999998888888777665 3
Q ss_pred C-CccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhh----------hchh
Q psy15227 347 N-FQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKS----------LGQH 415 (515)
Q Consensus 347 ~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~----------~g~~ 415 (515)
+ +.+..++..++.+.+.. ..+....++.|.+|+++|+++.++.....++|..+++.+.+.+.+. .+|+
T Consensus 88 ~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~ 166 (366)
T TIGR00886 88 VQSYSVLLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWG 166 (366)
T ss_pred hhhHHHHHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccccc
Confidence 3 44555555555555543 3344567889999999999999999988888888888877766652 3788
Q ss_pred HHH-HHHHHHHHHHHHHHHHHhhc
Q psy15227 416 VIF-FIYSSVHFCSVVFNYFYLME 438 (515)
Q Consensus 416 ~~~-~~~~~~~~~~~~~~~~~~~~ 438 (515)
..+ ...+.+..+..++.+...++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~ 190 (366)
T TIGR00886 167 WAFVIVPAGILLLPALLIFFVGAD 190 (366)
T ss_pred chhHHHHHHHHHHHHHHHHHhccc
Confidence 777 44354444444444344444
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.3e-11 Score=120.46 Aligned_cols=139 Identities=11% Similarity=0.100 Sum_probs=114.9
Q ss_pred cchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHhhhhhhhcccchhh
Q psy15227 53 LNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALLCLPTWFLVVSN-KIECLYIARLFIGISKGVAYTAMPI 131 (515)
Q Consensus 53 ~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~ 131 (515)
.++.+.+++.+...++..++.+++|+++||+|||+.+..+.....+........ +.+.+++.+++.+++.|...+....
T Consensus 249 ~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~~~~~~~ 328 (393)
T PRK15011 249 LPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGILGGIGML 328 (393)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888899998888888888999999999999999998887776666655555556 7888888999999888887777788
Q ss_pred hhhcccccccccccccccchhhhHHHHHHHHHhhHH----HhHHHHHhhhHHHHHHHHHhhcccC
Q psy15227 132 FIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHV----SYNSLNIALSILPVIFFILFSFVPE 192 (515)
Q Consensus 132 ~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~l----~wr~~f~i~~~~~~~~~~~~~~~pe 192 (515)
+..|.+|+ +|++++++++....+|..+++.+++.+ +|+..|++.+++.++.++..++.||
T Consensus 329 ~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 392 (393)
T PRK15011 329 YFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRIKD 392 (393)
T ss_pred HHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 88999886 499999998888888888888777654 8999999888888887777766665
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.8e-11 Score=117.48 Aligned_cols=159 Identities=11% Similarity=0.010 Sum_probs=115.3
Q ss_pred hHHHHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCC
Q psy15227 269 ITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNF 348 (515)
Q Consensus 269 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (515)
......+.+.+.++.|.+..+.+...+...++..++.++.|++.||+|||+.+..+..+.+++.+++..... ...+
T Consensus 29 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~----~~~~ 104 (402)
T TIGR00897 29 DGLEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGL----GHAN 104 (402)
T ss_pred hhhHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhc----cCcc
Confidence 344555667777888999889999999999999999999999999999999999888888777654432111 0123
Q ss_pred ccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHH-HHHHHHHHHHHhhhchhHHHHHHHHHHHH
Q psy15227 349 QYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGS-FITTKFHILITKSLGQHVIFFIYSSVHFC 427 (515)
Q Consensus 349 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~-~~~~~~~g~l~~~~g~~~~~~~~~~~~~~ 427 (515)
.+..++...+.+.+.....+.....+.+.+|+++|++++|+.+....+|. .++|.+.+.+.+..|++..++.......+
T Consensus 105 ~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~ 184 (402)
T TIGR00897 105 YPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLT 184 (402)
T ss_pred HHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence 33444444455555544445555677788899999999999999999996 57888888888888866555544433333
Q ss_pred HHHH
Q psy15227 428 SVVF 431 (515)
Q Consensus 428 ~~~~ 431 (515)
..++
T Consensus 185 ~~~~ 188 (402)
T TIGR00897 185 GGVI 188 (402)
T ss_pred HHHH
Confidence 3333
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.29 E-value=8.1e-12 Score=122.93 Aligned_cols=161 Identities=16% Similarity=0.097 Sum_probs=127.2
Q ss_pred hHHHHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCC
Q psy15227 269 ITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNF 348 (515)
Q Consensus 269 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (515)
.+......|.+.++.|.+..+.+...+...++..++.++.|+++||+|||+.+..+..+.+++.+.... .++
T Consensus 19 ~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~--------~~~ 90 (377)
T TIGR00890 19 VYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAI--------ADS 90 (377)
T ss_pred HhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHH--------HHH
Confidence 345566778888888999889999999999999999999999999999999999988888888777665 334
Q ss_pred ccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHH
Q psy15227 349 QYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCS 428 (515)
Q Consensus 349 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~ 428 (515)
.+..++...+.+.+.+...+.......|.+| ++|+++.++......+|..+++++.+.+.+..||+..+.+.+++.++.
T Consensus 91 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 169 (377)
T TIGR00890 91 LAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLV 169 (377)
T ss_pred HHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 4555555556666654444555566777776 569999999999999999888888888888889999999888887777
Q ss_pred HHHHHHHhhc
Q psy15227 429 VVFNYFYLME 438 (515)
Q Consensus 429 ~~~~~~~~~~ 438 (515)
.+..++..++
T Consensus 170 ~~~~~~~~~~ 179 (377)
T TIGR00890 170 IVLGAFLIGY 179 (377)
T ss_pred HHHHHHheec
Confidence 6665555443
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.7e-11 Score=114.66 Aligned_cols=157 Identities=17% Similarity=0.172 Sum_probs=132.6
Q ss_pred chHHHHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCC
Q psy15227 268 GITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPN 347 (515)
Q Consensus 268 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (515)
.........|.+.++.+.+..+.+.......+...++.++.|+++||+|||+.+..+.....++...... .+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~--------~~ 85 (352)
T cd06174 14 DRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAF--------AS 85 (352)
T ss_pred hhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHH--------hc
Confidence 3455666777888888888888999999999999999999999999999999999998888888887766 34
Q ss_pred CccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHH
Q psy15227 348 FQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFC 427 (515)
Q Consensus 348 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~ 427 (515)
+.+...+...+.+.+.+...+....+..|.+|+++|+++.+..+....+|..++|.+.+.+.+..+|+..+.+.+...++
T Consensus 86 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (352)
T cd06174 86 SLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLL 165 (352)
T ss_pred cHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 45566666666776667777888899999999999999999999999999999999999999998999888888777776
Q ss_pred HHHHH
Q psy15227 428 SVVFN 432 (515)
Q Consensus 428 ~~~~~ 432 (515)
..+..
T Consensus 166 ~~~~~ 170 (352)
T cd06174 166 LALLL 170 (352)
T ss_pred HHHHH
Confidence 65554
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.3e-10 Score=117.67 Aligned_cols=151 Identities=16% Similarity=0.128 Sum_probs=117.6
Q ss_pred chHHHHHHHHhhhc-ccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhh-hCCchhHHHhhHHHHHHHHHHHHHHHhhCCC
Q psy15227 268 GITSMITYSSTLLP-KLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDI-LGRKPLSCFSAALGCLLTFSTGLFYLYQGEL 345 (515)
Q Consensus 268 ~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (515)
+++.+..+.+.+++ +.|.+..++............+..+++|+++|| +|||+++..+.++..++.+.+.+
T Consensus 29 ~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~-------- 100 (489)
T PRK10207 29 GYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGM-------- 100 (489)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHH--------
Confidence 35555555565554 478887777777777777777788899999999 99999999999999998888776
Q ss_pred CCC-ccHHHHHHHHHHHHHhcccchhhhhhcccccch--hhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHH
Q psy15227 346 PNF-QYIPYITTLLYAASYYGIGCLPNILVSELFPIN--VRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYS 422 (515)
Q Consensus 346 ~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~--~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~ 422 (515)
... .....+...+.+.+.+...|...+++.|.+|++ +|+.+.++.+...++|..++|.+.|++.++.||+..|++.+
T Consensus 101 ~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~ 180 (489)
T PRK10207 101 SLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCG 180 (489)
T ss_pred hccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHH
Confidence 222 222334555566666777788889999999887 45788999999999999999999999999999999888865
Q ss_pred HHHH
Q psy15227 423 SVHF 426 (515)
Q Consensus 423 ~~~~ 426 (515)
+..+
T Consensus 181 i~~~ 184 (489)
T PRK10207 181 AGLI 184 (489)
T ss_pred HHHH
Confidence 4333
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.1e-11 Score=121.41 Aligned_cols=141 Identities=13% Similarity=0.185 Sum_probs=119.4
Q ss_pred cchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhh--h---hhHHHHHHHHhhhhhhhccc
Q psy15227 53 LNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALLCLPTWFLVVSN--K---IECLYIARLFIGISKGVAYT 127 (515)
Q Consensus 53 ~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~--~---~~~l~~~r~l~G~~~g~~~~ 127 (515)
.+.++.+...++..++..++.++.|+++||+|||+++..+.++.+++..+.... + ++.+++.+++.|++.+...+
T Consensus 248 ~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~ 327 (418)
T TIGR00889 248 FVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNI 327 (418)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 345778999999999999999999999999999999999999998887766663 2 45677889999999998888
Q ss_pred chhhhhhcccccccccccccccc-hhhhHHHHHHHHHhhHH----------HhHHHHHhhhHHHHHHHHHhh-cccCc
Q psy15227 128 AMPIFIGEISEHNIRGALGSIPS-GFQMVGTLAILLIGNHV----------SYNSLNIALSILPVIFFILFS-FVPET 193 (515)
Q Consensus 128 ~~~~~i~e~~~~~~r~~~~~~~~-~~~~lG~~~~~~l~~~l----------~wr~~f~i~~~~~~~~~~~~~-~~pes 193 (515)
....++.|++|+++|+++.++.+ ...++|..++|.+++.+ ||+..|.+.+++.++..++.+ ++||+
T Consensus 328 ~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~ 405 (418)
T TIGR00889 328 SGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYS 405 (418)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 98999999999999999999997 56788888888887654 389999988888877666654 47775
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.28 E-value=2e-11 Score=123.73 Aligned_cols=165 Identities=10% Similarity=-0.068 Sum_probs=126.3
Q ss_pred HHHHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCCc
Q psy15227 270 TSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQ 349 (515)
Q Consensus 270 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (515)
..+....|.+.++.|.+..+.+...+...++..++.++.|+++||+|||+++..+.++.++..+.++..... ..++.
T Consensus 46 ~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~---~~~~~ 122 (467)
T PRK09556 46 KNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGS---GSVSL 122 (467)
T ss_pred cChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhc---ccchH
Confidence 334455677888889988899999999999999999999999999999999988887777766665542110 02345
Q ss_pred cHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhh---chhHHHHHHHHHHH
Q psy15227 350 YIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSL---GQHVIFFIYSSVHF 426 (515)
Q Consensus 350 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~---g~~~~~~~~~~~~~ 426 (515)
+..++.-.+.+++.+...|....+++|.+|+++||++.|+......+|..+++.+...+.+.. +|+..|.+.+++.+
T Consensus 123 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~ 202 (467)
T PRK09556 123 GLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIAL 202 (467)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHH
Confidence 555666666777666667788889999999999999999999999999999999887776653 47767777676666
Q ss_pred HHHHHHHHHhh
Q psy15227 427 CSVVFNYFYLM 437 (515)
Q Consensus 427 ~~~~~~~~~~~ 437 (515)
+..++.++..+
T Consensus 203 ~~~i~~~~~~~ 213 (467)
T PRK09556 203 IIGFIGLRYGS 213 (467)
T ss_pred HHHHHHHHhCC
Confidence 65555444444
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.2e-11 Score=100.34 Aligned_cols=135 Identities=18% Similarity=0.198 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhh
Q psy15227 295 LVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILV 374 (515)
Q Consensus 295 ~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 374 (515)
....++..++.+..+++.||+|||+.+..+.....++.+.... .++.+...+...+.+.+.....+....+.
T Consensus 5 ~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 76 (141)
T TIGR00880 5 AGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFAL--------SSNITVLIIARFLQGFGAAFALVAGAALI 76 (141)
T ss_pred EeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHH--------hccHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3456778889999999999999999988887777777666554 34455556666667766666667778899
Q ss_pred cccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHhh
Q psy15227 375 SELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFNYFYLM 437 (515)
Q Consensus 375 ~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 437 (515)
.|.+|++.|+++.++.+....++..++|.+.+.+.+..+++..+.+.+...+++.+..+...|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (141)
T TIGR00880 77 ADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLP 139 (141)
T ss_pred HHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCC
Confidence 999999999999999999999999999999999999889988888888777777666554444
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.4e-11 Score=121.13 Aligned_cols=147 Identities=18% Similarity=0.165 Sum_probs=115.6
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhcc
Q psy15227 287 YFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGI 366 (515)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 366 (515)
..+.+...+...++..++.++.|+++||+|||+.+..+..+..++.++...... ....+..++...+.+++.+..
T Consensus 70 ~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~r~l~G~~~~~~ 144 (481)
T TIGR00879 70 SSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAF-----ALSVEMLIVGRVLLGIGVGIA 144 (481)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhcc-----ccchHHHHHHHHHHHhhhhHH
Confidence 678888999999999999999999999999999999888888877776654211 222335666677777777777
Q ss_pred cchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHH---HHHHhhhchhHHHHHHHHHHHHHHHHHHHHhhcc
Q psy15227 367 GCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFH---ILITKSLGQHVIFFIYSSVHFCSVVFNYFYLMET 439 (515)
Q Consensus 367 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~---g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (515)
.+....++.|.+|+++|+++.++.+....+|..+++.+. +...+..+|+..|++.+...++..+. .++.+|+
T Consensus 145 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~-~~~l~~~ 219 (481)
T TIGR00879 145 SALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLG-LFFLPES 219 (481)
T ss_pred HhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHH-HhcCCCC
Confidence 777788999999999999999999999999999999988 66557789998888865555544433 3445554
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >KOG2615|consensus | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.9e-11 Score=108.76 Aligned_cols=117 Identities=17% Similarity=0.144 Sum_probs=94.2
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHh
Q psy15227 285 NAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYY 364 (515)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 364 (515)
.+..-+|.+.+.+++..++.++..|.++||+|||.++..+....++...+.+. +.+. ..++..=+.+..+-
T Consensus 65 ~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~--------S~~F-~afv~aR~l~Gi~k 135 (451)
T KOG2615|consen 65 ASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWAL--------SRNF-AAFVLARFLGGIFK 135 (451)
T ss_pred ccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHH--------HHHH-HHHHHHHHhhhhcc
Confidence 34456788889999999999999999999999999999999888887777666 3333 22222122222335
Q ss_pred cccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q psy15227 365 GIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITK 410 (515)
Q Consensus 365 ~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~ 410 (515)
+...+..++++|++++++|+.+++.++...++|.++||.++|++..
T Consensus 136 gnl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 136 GNLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred CchHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 5556667999999999999999999999999999999999999987
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.1e-10 Score=115.66 Aligned_cols=153 Identities=10% Similarity=-0.050 Sum_probs=111.8
Q ss_pred hHHHHHHHHhh-hcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCC
Q psy15227 269 ITSMITYSSTL-LPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPN 347 (515)
Q Consensus 269 ~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (515)
........|.+ .++.|.+..+.+...+...+...+++++.|+++||+|||+.+..+.+...++.+..............
T Consensus 31 ~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (392)
T PRK12382 31 VGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPF 110 (392)
T ss_pred HHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhH
Confidence 34444455554 45679998999999999999999999999999999999999888777666554332221110000012
Q ss_pred CccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHH
Q psy15227 348 FQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIY 421 (515)
Q Consensus 348 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~ 421 (515)
+.+..++.-.+.+.+.....+...++..|.+|+++|+++.+.......++..++|.+.+.+.+..||+..+.+.
T Consensus 111 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~ 184 (392)
T PRK12382 111 KFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTT 184 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHH
Confidence 23444555556666665555666678889999999999999999999999999999999999988987654443
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.2e-10 Score=111.02 Aligned_cols=165 Identities=11% Similarity=-0.026 Sum_probs=117.4
Q ss_pred HHHHHHHHhhhc-ccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCC
Q psy15227 270 TSMITYSSTLLP-KLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNF 348 (515)
Q Consensus 270 ~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (515)
.......+.+.+ +.+++..+.+...++..+...++++..|++.||+|.|+++..+..+..+..+..++... +..++
T Consensus 51 ~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~---~~~~s 127 (462)
T PRK15034 51 MLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQ---NPNTP 127 (462)
T ss_pred HHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHc---ccCCC
Confidence 333334444444 57888889999999999999999999999999999999998888888777776665211 11244
Q ss_pred ccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHH-----h-------------
Q psy15227 349 QYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILIT-----K------------- 410 (515)
Q Consensus 349 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~-----~------------- 410 (515)
.+..++.-.+.+++ +...+.....+++.+|+++||++.|+....+++|..+++.+.+.+. +
T Consensus 128 ~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~ 206 (462)
T PRK15034 128 FGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGS 206 (462)
T ss_pred HHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccc
Confidence 55566666666665 4556667788999999999999999997777777766666555433 2
Q ss_pred hhchhHHHHHHHHHHHHHHHHHHHHhhc
Q psy15227 411 SLGQHVIFFIYSSVHFCSVVFNYFYLME 438 (515)
Q Consensus 411 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (515)
..+++.+.+++..+.++..++.++..++
T Consensus 207 ~~~~~~~~~~~~~~~iv~~i~~~~~~~~ 234 (462)
T PRK15034 207 VMSLANAAWIWVPLLAIATIAAWSGMND 234 (462)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 2345666667777777666666555443
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.3e-10 Score=115.45 Aligned_cols=159 Identities=14% Similarity=-0.029 Sum_probs=118.2
Q ss_pred chHHHHHHHHhhh-cccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCC
Q psy15227 268 GITSMITYSSTLL-PKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELP 346 (515)
Q Consensus 268 ~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (515)
+........|.++ ++.|.+..+.+...+...+...+++++.|+++||+|||+++..+..+.+++...+.......+...
T Consensus 30 ~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (399)
T PRK05122 30 TIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPV 109 (399)
T ss_pred HHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccch
Confidence 3455555666654 567888889999999999999999999999999999999999988877766554433221100000
Q ss_pred CCccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHH
Q psy15227 347 NFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHF 426 (515)
Q Consensus 347 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~ 426 (515)
.+.+..++.-++.+.+.....+....+..|.+|+++|+++.++......+|..+++.+.+.+.+..||+..+.+.+++.+
T Consensus 110 ~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~ 189 (399)
T PRK05122 110 LSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLAL 189 (399)
T ss_pred hHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 11223444555666666666677778888999999999999999999999999999999999999999876665544433
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=8.2e-10 Score=109.30 Aligned_cols=149 Identities=11% Similarity=-0.063 Sum_probs=125.0
Q ss_pred HHHHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCCc
Q psy15227 270 TSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQ 349 (515)
Q Consensus 270 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (515)
.......|.+.++.+.+..+.+...+...++..++.++.|++.||+|||+++..+..+.+++.+..++ .++.
T Consensus 26 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~--------a~~~ 97 (393)
T PRK09705 26 TSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMREL--------YPQS 97 (393)
T ss_pred hccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHH--------Ccch
Confidence 44556678888889999889999999999999999999999999999999999999999999998887 5566
Q ss_pred cHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhh-chhHHHHHHHHHHHH
Q psy15227 350 YIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSL-GQHVIFFIYSSVHFC 427 (515)
Q Consensus 350 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~-g~~~~~~~~~~~~~~ 427 (515)
+..++.-++.+++.+...+....++.+.+| ++|+.++|.......+|..+++.+.+.+.++. +|+..+.+.++..++
T Consensus 98 ~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~ 175 (393)
T PRK09705 98 ALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVV 175 (393)
T ss_pred HHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 666777777777776666666778888887 77999999999999999999999999988875 788777666555443
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.5e-11 Score=120.23 Aligned_cols=156 Identities=15% Similarity=0.128 Sum_probs=115.4
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhh-CCCCCC---ccHHHHHHHHH
Q psy15227 284 DNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQ-GELPNF---QYIPYITTLLY 359 (515)
Q Consensus 284 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~l~ 359 (515)
+.+..+.+...+...++..++.++.|+++||+|||+++..+..+..++.+......... .....+ .+..++.-++.
T Consensus 51 ~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~ 130 (479)
T PRK10077 51 SAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIG 130 (479)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHH
Confidence 66667888889999999999999999999999999999998888877766554311000 000011 12334555666
Q ss_pred HHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHH--------hhhchhHHHHHHHHHHHHHHHH
Q psy15227 360 AASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILIT--------KSLGQHVIFFIYSSVHFCSVVF 431 (515)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~--------~~~g~~~~~~~~~~~~~~~~~~ 431 (515)
+++.++..+...++++|.+|+++|+++.++......+|..+++.+.+.+. +..||+..|++.++..++..+.
T Consensus 131 G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~ 210 (479)
T PRK10077 131 GIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLML 210 (479)
T ss_pred hhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHH
Confidence 77777788888899999999999999999999999999988876655443 3568999988877776665544
Q ss_pred HHHHhhccc
Q psy15227 432 NYFYLMETK 440 (515)
Q Consensus 432 ~~~~~~~~~ 440 (515)
.+++||+.
T Consensus 211 -~~~l~~s~ 218 (479)
T PRK10077 211 -LYFVPETP 218 (479)
T ss_pred -HHcCCCCc
Confidence 45566653
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.4e-10 Score=112.35 Aligned_cols=157 Identities=13% Similarity=-0.001 Sum_probs=125.1
Q ss_pred HHHHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCCc
Q psy15227 270 TSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQ 349 (515)
Q Consensus 270 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (515)
.......|.+.++.+.+..+.+.......++..++++..|++.||+|||+.+..+..+.+++.+++..... .++.
T Consensus 20 ~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~-----~~~~ 94 (410)
T TIGR00885 20 DITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAE-----IMNY 94 (410)
T ss_pred HhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHh-----hccH
Confidence 44456678888888999889999999999999999999999999999999999999998888766543211 2344
Q ss_pred cHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHh-------------------
Q psy15227 350 YIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITK------------------- 410 (515)
Q Consensus 350 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~------------------- 410 (515)
+..++..++.+.+.+...+....++.+..|+++|++..++.+....+|..++|.+.+.+..
T Consensus 95 ~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 174 (410)
T TIGR00885 95 TLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEEL 174 (410)
T ss_pred HHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHH
Confidence 5556666777777777777777888888899999999999999999999999999887742
Q ss_pred -------hhchhHHHHHHHHHHHHHHHH
Q psy15227 411 -------SLGQHVIFFIYSSVHFCSVVF 431 (515)
Q Consensus 411 -------~~g~~~~~~~~~~~~~~~~~~ 431 (515)
..+|+.+|.+.+++.++..++
T Consensus 175 ~~~~~~~~~~w~~~fl~~a~~~~~~~~~ 202 (410)
T TIGR00885 175 SAIKHSDLASVQTPYMIIGAVVLAVALL 202 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 245888888888766655443
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.5e-10 Score=112.88 Aligned_cols=154 Identities=8% Similarity=0.049 Sum_probs=115.8
Q ss_pred HHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCCccH
Q psy15227 272 MITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYI 351 (515)
Q Consensus 272 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (515)
.....+....+.+.++...+.......+...+..++.|+++||+|||+++..+..+.+++.+.+... .+.
T Consensus 22 ~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~--------~~~-- 91 (393)
T PRK11195 22 LLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFG--------IHP-- 91 (393)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHH--------HHH--
Confidence 3444445566777776677888888999999999999999999999999999988887766655441 111
Q ss_pred HHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHH
Q psy15227 352 PYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSVVF 431 (515)
Q Consensus 352 ~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 431 (515)
++..++.+.+.+...|...+++.|.+|+++|+++.|+......++..++|.+.|.+.+.. +...+.+.+.+.+++.+
T Consensus 92 -~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~-~~~~~~i~~~~~~~~~~- 168 (393)
T PRK11195 92 -LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPH-AEAALAVCALIYLLAAL- 168 (393)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-
Confidence 334456666667788898999999999999999999999999999999999999998854 55555555444333322
Q ss_pred HHHHhhc
Q psy15227 432 NYFYLME 438 (515)
Q Consensus 432 ~~~~~~~ 438 (515)
.....||
T Consensus 169 ~~~~l~~ 175 (393)
T PRK11195 169 FNLFIPR 175 (393)
T ss_pred HHhcCCC
Confidence 2344454
|
|
| >KOG3098|consensus | Back alignment and domain information |
|---|
Probab=99.22 E-value=6.8e-09 Score=101.12 Aligned_cols=312 Identities=15% Similarity=0.098 Sum_probs=184.4
Q ss_pred HHHHHHHhhhhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhhhhcccchhhhhhccccccc
Q psy15227 62 VSLLDLGNAISPIFAGILVEKIGRKTTLLLNALLCLPTWFLVVSNKIECLYIARLFIGISKGVAYTAMPIFIGEISEHNI 141 (515)
Q Consensus 62 ~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~ 141 (515)
.++-+....++.++.+.+.|+.|.|+.+.++...+....+...+.|-+-++..-.+.|+|.+..+..--.+++|..+++.
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~t 135 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFPNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRET 135 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcchHHHHHHHHHhhhhHHheecccceehhhcCChhh
Confidence 77788888899999999999999999999999999888887766688889999999999999999999999999999999
Q ss_pred ccccccccchhhhHHHHHHHHHhhHH------------HhH-HHH----------HhhhHHH---HHHHHHhhcccCcch
Q psy15227 142 RGALGSIPSGFQMVGTLAILLIGNHV------------SYN-SLN----------IALSILP---VIFFILFSFVPETPH 195 (515)
Q Consensus 142 r~~~~~~~~~~~~lG~~~~~~l~~~l------------~wr-~~f----------~i~~~~~---~~~~~~~~~~pesp~ 195 (515)
+.+..++.-.....+.++|+.+...+ +-+ ..+ .+.+++. .+..+...+.|...
T Consensus 136 ie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~~~p~~~- 214 (461)
T KOG3098|consen 136 IERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFDFLPSKD- 214 (461)
T ss_pred HHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhheeecCccc-
Confidence 99999998888888888886665332 111 111 1111111 11111111222210
Q ss_pred hhhhcCChhHHHHHHHhhcCCCcChHHHHHHHHHHhhhhhhchhhhhhhhccccchhHHHHHHHHHHHHHhhchHHHHHH
Q psy15227 196 FHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITY 275 (515)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (515)
.. .+ .+..+....+.-....+++++++ .+........... ........
T Consensus 215 ~~------------------------~~---~~~~~~~~~~~l~~~~~l~~~~~----ml~L~~~f~~tG~-~~Sf~~~i 262 (461)
T KOG3098|consen 215 VV------------------------NC---KSSSETSFSELLKLTFKLLKTPK----MLLLFPFFFYTGL-ETSFWISI 262 (461)
T ss_pred hh------------------------hh---hhhccccHHHHHHHHHHHhcCHh----HHHHHHHHHHHHH-HHHHHHhc
Confidence 00 00 00000000000011223333322 1111111111111 11112222
Q ss_pred HHhhhc---ccCCC-CCCcchhHHHHHHHHHHHHHHHHHHHhh---hCCchhHHHhhHHHHHHHHHHHHHHHhhCC----
Q psy15227 276 SSTLLP---KLDNA-YFGPDQCILVFMIIMFLSNFLQAPLMDI---LGRKPLSCFSAALGCLLTFSTGLFYLYQGE---- 344 (515)
Q Consensus 276 ~~~~~~---~~g~~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~---~grr~~~~~~~~~~~~~~~~~~~~~~~~~~---- 344 (515)
.|.-.. ..+.+ ....+......+++.+.+....+.+.+| +||++++.++..+..+..++.-+......+
T Consensus 263 ypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t 342 (461)
T KOG3098|consen 263 YPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPT 342 (461)
T ss_pred cchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCC
Confidence 222211 12221 1223334455566777777777777765 577888877777776666655443221110
Q ss_pred ------CCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy15227 345 ------LPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHIL 407 (515)
Q Consensus 345 ------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~ 407 (515)
..+......+...+.|.+-.+.....+.++...+ ++.|.++.++.-.-..+++.++-...+.
T Consensus 343 ~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~ 410 (461)
T KOG3098|consen 343 DSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPY 410 (461)
T ss_pred cccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 0011234555666666666888888889999998 4678899998888888877766554443
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.5e-10 Score=113.64 Aligned_cols=156 Identities=16% Similarity=0.072 Sum_probs=113.9
Q ss_pred chHHHHHHHHhhh-cccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhh-hCCchhHHHhhHHHHHHHHHHHHHHHhhCCC
Q psy15227 268 GITSMITYSSTLL-PKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDI-LGRKPLSCFSAALGCLLTFSTGLFYLYQGEL 345 (515)
Q Consensus 268 ~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (515)
+++.+..+.+.++ ++.|++..++...............+++|+++|| +|||+.+..+..+.+++..++.+.
T Consensus 36 ~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~------- 108 (500)
T PRK09584 36 GYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWS------- 108 (500)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh-------
Confidence 4556666777776 5578876666666655555555556789999999 599999999988888887766551
Q ss_pred CCCccHHHHHHHHHHHHHhcccchhhhhhcccccchh--hhhhhhHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHH
Q psy15227 346 PNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINV--RCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSS 423 (515)
Q Consensus 346 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~--r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~ 423 (515)
.+..+...+...+.+++.+...+...++..|.+|++. |+.+.++.+...++|..++|.+.|++.++.||+..|.+.++
T Consensus 109 ~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i 188 (500)
T PRK09584 109 GHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVV 188 (500)
T ss_pred cccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 1222333444455666666666777788999998643 45678888999999999999999999999999999988776
Q ss_pred HHHHHHH
Q psy15227 424 VHFCSVV 430 (515)
Q Consensus 424 ~~~~~~~ 430 (515)
...++.+
T Consensus 189 ~~~i~~i 195 (500)
T PRK09584 189 GMLITVV 195 (500)
T ss_pred HHHHHHH
Confidence 5555443
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.21 E-value=3e-10 Score=111.82 Aligned_cols=162 Identities=13% Similarity=0.041 Sum_probs=115.8
Q ss_pred HHHHHHHHhhh-cccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHH-hhHHHHHHHHHHHHHHHhhCCCCC
Q psy15227 270 TSMITYSSTLL-PKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCF-SAALGCLLTFSTGLFYLYQGELPN 347 (515)
Q Consensus 270 ~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 347 (515)
.......|.++ ++.|.+..+.+...+...+...+..++.|+++||+|||+.+.. +.....++..+... .+
T Consensus 14 ~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~--------~~ 85 (375)
T TIGR00899 14 ALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAW--------NR 85 (375)
T ss_pred HHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHh--------cc
Confidence 44445556554 5678888888999888889999999999999999998886554 44444444444444 33
Q ss_pred CccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhh--hhHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHH
Q psy15227 348 FQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQA--SSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVH 425 (515)
Q Consensus 348 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~--~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~ 425 (515)
+.+..++...+.+.+.....|....+..|..|++.|+.+ .+.......+|..++|.+.+.+.+..||+..|++.+.+.
T Consensus 86 ~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~ 165 (375)
T TIGR00899 86 NYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAF 165 (375)
T ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHH
Confidence 444444444444444445566666777888777666644 577777889999999999999999999999999988887
Q ss_pred HHHHHHHHHHhhcc
Q psy15227 426 FCSVVFNYFYLMET 439 (515)
Q Consensus 426 ~~~~~~~~~~~~~~ 439 (515)
++..+..++..||.
T Consensus 166 ~~~~~~~~~~~~~~ 179 (375)
T TIGR00899 166 VLCGVLVWLFLPSY 179 (375)
T ss_pred HHHHHHHHHhCCCc
Confidence 77766665555553
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.9e-09 Score=103.32 Aligned_cols=137 Identities=16% Similarity=0.080 Sum_probs=118.5
Q ss_pred HHHHHHHHhhhcccCCCCCC-cchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCC
Q psy15227 270 TSMITYSSTLLPKLDNAYFG-PDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNF 348 (515)
Q Consensus 270 ~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (515)
.....-.|.+.++.|++..+ .+.+...+..+..+..+.+|+++||+|.|+.+..+.+...+..++.++ ..+
T Consensus 43 ~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~f--------a~S 114 (511)
T TIGR00806 43 PGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLL--------GTS 114 (511)
T ss_pred chHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHH--------HHH
Confidence 34455667777789999888 999999999999999999999999999999999999999888888887 444
Q ss_pred ccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhchhH
Q psy15227 349 QYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHV 416 (515)
Q Consensus 349 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~ 416 (515)
.+...+.-+++|++.+... ....++.+.+|+++|+++.|+.+....+|.++++++.+. ...+||+.
T Consensus 115 l~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~ 180 (511)
T TIGR00806 115 VWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWIS 180 (511)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchh
Confidence 6677777888888886666 777999999999999999999999999999999999999 55678774
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.6e-10 Score=117.06 Aligned_cols=153 Identities=19% Similarity=0.244 Sum_probs=123.7
Q ss_pred HHHhhhcccCCC---CCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCCccH
Q psy15227 275 YSSTLLPKLDNA---YFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYI 351 (515)
Q Consensus 275 ~~~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (515)
+.+.+.++.+.+ ..+.+...+...++.+++.++.|+++||+|||+.+..+.++..++.++..+ .++.+.
T Consensus 111 ~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~--------~~~~~~ 182 (505)
T TIGR00898 111 FSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAF--------SPNYTV 182 (505)
T ss_pred ccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHH--------cccHHH
Confidence 456666777776 677888999999999999999999999999999999988888887777665 455666
Q ss_pred HHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHH
Q psy15227 352 PYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSVVF 431 (515)
Q Consensus 352 ~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 431 (515)
..+..++.+++.++..+...+++.|.+|+++|+.+.++......+|.++++.+.+.+.+ |+..+++.++..++..+.
T Consensus 183 ~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~~i~~~~~~~~ 259 (505)
T TIGR00898 183 FLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAVSLPTFLFFLL 259 (505)
T ss_pred HHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHH
Confidence 66677777777777788888999999999999999999998999999998887766544 888888887777666555
Q ss_pred HHHHhhcc
Q psy15227 432 NYFYLMET 439 (515)
Q Consensus 432 ~~~~~~~~ 439 (515)
. ++.+|+
T Consensus 260 ~-~~~~es 266 (505)
T TIGR00898 260 S-WFVPES 266 (505)
T ss_pred H-HhcCCC
Confidence 4 556664
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.6e-10 Score=110.75 Aligned_cols=140 Identities=8% Similarity=-0.053 Sum_probs=116.1
Q ss_pred HhhchHHHHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCC
Q psy15227 265 RLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGE 344 (515)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (515)
..........+.|.+.++.|.+..+.+...+...++..++.++.|+++||+|||+.+..+..+.+++......
T Consensus 18 ~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~------- 90 (381)
T PRK03633 18 LTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGL------- 90 (381)
T ss_pred HHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 3344566778889999999998889999999999999999999999999999999999988888887777665
Q ss_pred CCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q psy15227 345 LPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSL 412 (515)
Q Consensus 345 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~ 412 (515)
.++.+...+..++.+++.+...+.......+..|+++|+++.+.......+|..++|.+.+.+.+..
T Consensus 91 -~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 157 (381)
T PRK03633 91 -MVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTEL 157 (381)
T ss_pred -hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 4455666666677777766666665566677888899999999999999999999999999887654
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.6e-10 Score=105.23 Aligned_cols=162 Identities=13% Similarity=0.052 Sum_probs=128.5
Q ss_pred HHHHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCCc
Q psy15227 270 TSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQ 349 (515)
Q Consensus 270 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (515)
..+....+.+-++.++++.|.+.+..+..+.+.+.++..|++.||+|.|+....+.++..+-.+.+.+... .++.
T Consensus 31 ~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~-----~~~~ 105 (417)
T COG2223 31 TLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVT-----YPST 105 (417)
T ss_pred HHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHcc-----CCch
Confidence 33444445555788999999999999999999999999999999999999999998888888877776322 2222
Q ss_pred cHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc---hhHHHHHHHHHHH
Q psy15227 350 YIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLG---QHVIFFIYSSVHF 426 (515)
Q Consensus 350 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~g---~~~~~~~~~~~~~ 426 (515)
+..++..++.+++ ++.+++...++++.+|+|++|.+.|+.. .+++|..+...+.+.+....| |+.+..++....+
T Consensus 106 ~~ll~~gll~G~~-GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~ 183 (417)
T COG2223 106 WQLLVIGLLLGLA-GASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALA 183 (417)
T ss_pred HHHHHHHHHHhcc-cceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3444433333333 5666777789999999999999999998 999999999999999999898 8888888888888
Q ss_pred HHHHHHHHHhhc
Q psy15227 427 CSVVFNYFYLME 438 (515)
Q Consensus 427 ~~~~~~~~~~~~ 438 (515)
+..+..++..++
T Consensus 184 v~~v~~~~~~~d 195 (417)
T COG2223 184 IAAVLAWLGMND 195 (417)
T ss_pred HHHHHHHHHhCC
Confidence 877777666543
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.4e-09 Score=109.20 Aligned_cols=160 Identities=12% Similarity=0.022 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHhhhcccCCCCCCcchhH-HHH-----HHHHHHHHHHHHHHHhhhCCchhHHHhhHH
Q psy15227 254 FTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCI-LVF-----MIIMFLSNFLQAPLMDILGRKPLSCFSAAL 327 (515)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~-----~~~~~~~~~~~g~l~d~~grr~~~~~~~~~ 327 (515)
.....++..+........+....|.+.++.+.+..+.+... +.. .+...++.++.|++.||+|||+.+..+..+
T Consensus 16 ~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~ 95 (434)
T PRK15075 16 AILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSI 95 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHH
Confidence 44455555555555667778888988888877655543322 111 222246789999999999999999999998
Q ss_pred HHHHHHHHHHHHHhhCCCCCCcc--------HHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHH
Q psy15227 328 GCLLTFSTGLFYLYQGELPNFQY--------IPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSF 399 (515)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~ 399 (515)
..++.++.++ .++.+ ..++.-++.+++.+...+....+++|.+|+++|+++.++.....++|..
T Consensus 96 ~~~~~~l~~~--------~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~ 167 (434)
T PRK15075 96 MASGTLLIAF--------VPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVV 167 (434)
T ss_pred HHHHHHHHHh--------CCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHH
Confidence 8888887776 33322 2234445555555555666678999999999999999999988888888
Q ss_pred HHHHHHHHH--------HhhhchhHHHHHH
Q psy15227 400 ITTKFHILI--------TKSLGQHVIFFIY 421 (515)
Q Consensus 400 ~~~~~~g~l--------~~~~g~~~~~~~~ 421 (515)
+++.+.+.+ .+..||+.+|++.
T Consensus 168 ~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~ 197 (434)
T PRK15075 168 FAALLGYLLNQWLSPAQMAEWGWRIPFLIG 197 (434)
T ss_pred HHHHHHHHHHHhCCHHHHhccchHHHHHHH
Confidence 777776655 3567899888764
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.4e-09 Score=109.15 Aligned_cols=157 Identities=13% Similarity=0.044 Sum_probs=108.0
Q ss_pred HHhhchHHHHHHHHhhhcccC---CCCCCc---chhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHH
Q psy15227 264 QRLGGITSMITYSSTLLPKLD---NAYFGP---DQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGL 337 (515)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~g---~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~ 337 (515)
........+....|.+.++.+ .+..+. +.......++..+++++.|+++||+|||+.+..+..+.+++.++.++
T Consensus 33 ~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~ 112 (432)
T PRK10406 33 VEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIAC 112 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhh
Confidence 333344455555566656543 222221 22333444555689999999999999999999999999888887766
Q ss_pred HHHhhCCCCCCc--------cHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy15227 338 FYLYQGELPNFQ--------YIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILIT 409 (515)
Q Consensus 338 ~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~ 409 (515)
.++. ...++.-++.+++.++..+...++++|.+|+++|+.+.++.......|..+++.+...+.
T Consensus 113 --------~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~ 184 (432)
T PRK10406 113 --------LPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQ 184 (432)
T ss_pred --------cCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2221 134445556666667777888899999999999999999888777777777776654443
Q ss_pred --------hhhchhHHHHHHHHHHHHH
Q psy15227 410 --------KSLGQHVIFFIYSSVHFCS 428 (515)
Q Consensus 410 --------~~~g~~~~~~~~~~~~~~~ 428 (515)
+.+||+.+|++.++..++.
T Consensus 185 ~~~~~~~~~~~gWr~~F~i~~~~~ll~ 211 (432)
T PRK10406 185 QTLEDAELREWGWRIPFALGAVLAVVA 211 (432)
T ss_pred HhCCHHHHhccchHHHHHHHHHHHHHH
Confidence 2579999998766655443
|
|
| >KOG3764|consensus | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.4e-10 Score=107.73 Aligned_cols=149 Identities=14% Similarity=0.119 Sum_probs=133.4
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHH
Q psy15227 284 DNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASY 363 (515)
Q Consensus 284 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 363 (515)
+-...+.+.+.....+.+++.+++.|.+.||+|+|..+.+++..+..+.+++++ .++.+...+.=.+-+.+.
T Consensus 102 ~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFaf--------g~sy~~l~vAR~LQgvgs 173 (464)
T KOG3764|consen 102 DRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAF--------GNSYPMLFVARSLQGVGS 173 (464)
T ss_pred cccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHH--------cchhHHHHHHHHHhhhhH
Confidence 444468889999999999999999999999999999999999999999999988 777788888888899998
Q ss_pred hcccchhhhhhcccccchh-hhhhhhHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHhhccc
Q psy15227 364 YGIGCLPNILVSELFPINV-RCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFNYFYLMETK 440 (515)
Q Consensus 364 ~~~~~~~~~~~~~~~p~~~-r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (515)
.+......+++++.+|++. |++++|+...+..+|-.++|.++|.++|..|.+.+|++.+.++++...+.++.++.++
T Consensus 174 A~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~ 251 (464)
T KOG3764|consen 174 AFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTE 251 (464)
T ss_pred HHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccc
Confidence 7777777899999999875 7999999999999999999999999999999999999999999999888766655433
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.8e-09 Score=108.25 Aligned_cols=166 Identities=13% Similarity=0.096 Sum_probs=115.5
Q ss_pred hHHHHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCC
Q psy15227 269 ITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNF 348 (515)
Q Consensus 269 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (515)
.+.+..+.+.+.++.|++..+.+....... ......++.|++.||+|+|+++.++.++..++.++.++.... ....+
T Consensus 43 ~y~fsv~s~~L~~~lgls~~~l~~i~svg~-~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~--~i~~s 119 (591)
T PTZ00207 43 MYAFNLISGAMQARYNLTQRDLSTITTVGI-AVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQE--VIEGS 119 (591)
T ss_pred HHHHHHHHHHHHHHhCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcc--cccCc
Confidence 456667788888888988777666665533 333456678999999999999999999999998887763110 00134
Q ss_pred ccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHH
Q psy15227 349 QYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCS 428 (515)
Q Consensus 349 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~ 428 (515)
.+...+...+.+.+.+...+.....+.+.+| ++||.+.|+......+|+++.+.+...+.. .++...+++.+++.++.
T Consensus 120 ~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-~~~~~~fl~l~vl~~vv 197 (591)
T PTZ00207 120 VVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-DNTSAYFFFLMSFALVV 197 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHH
Confidence 4555555556666655455555567788887 679999999999999999865555544443 34566777777777777
Q ss_pred HHHHHHHhhcc
Q psy15227 429 VVFNYFYLMET 439 (515)
Q Consensus 429 ~~~~~~~~~~~ 439 (515)
.++...+++..
T Consensus 198 ~ll~~~~vr~p 208 (591)
T PTZ00207 198 GILAIVFMRLP 208 (591)
T ss_pred HHHHHhheeCC
Confidence 66665655443
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.4e-10 Score=117.87 Aligned_cols=183 Identities=13% Similarity=0.029 Sum_probs=134.9
Q ss_pred HHHHHHHHHHhhchHHHHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHH
Q psy15227 256 LVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFST 335 (515)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~ 335 (515)
..+.+..+.+.........-.+.+-++.+++..+.+.+.+...++..++.++.+++.||.+||+.+.++.++.+++.++.
T Consensus 36 ~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~ 115 (633)
T TIGR00805 36 LLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLL 115 (633)
T ss_pred HHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHH
Confidence 33343444443333444455566667789998999999999999999999999999999999999999999999998887
Q ss_pred HHHHHhhC------------C-----------C-----------------C--C-CccHHHHHHHHHHHHHhcccchhhh
Q psy15227 336 GLFYLYQG------------E-----------L-----------------P--N-FQYIPYITTLLYAASYYGIGCLPNI 372 (515)
Q Consensus 336 ~~~~~~~~------------~-----------~-----------------~--~-~~~~~~~~~~l~~~~~~~~~~~~~~ 372 (515)
++.....+ . . . . .....++.-++.|++.+...+...+
T Consensus 116 alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~ 195 (633)
T TIGR00805 116 SLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGIS 195 (633)
T ss_pred hChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCch
Confidence 76432110 0 0 0 0 1223445666777777777788889
Q ss_pred hhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhh----------------------chhHHHHHHHHHHHHHHH
Q psy15227 373 LVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSL----------------------GQHVIFFIYSSVHFCSVV 430 (515)
Q Consensus 373 ~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~----------------------g~~~~~~~~~~~~~~~~~ 430 (515)
++.|.+|++.|+...|+.+....+|..+++.+.+.+.+.+ +|+..|++.+++.++..+
T Consensus 196 ~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v 275 (633)
T TIGR00805 196 YIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSI 275 (633)
T ss_pred hhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999887543 256667777777766655
Q ss_pred HHHHHhhcc
Q psy15227 431 FNYFYLMET 439 (515)
Q Consensus 431 ~~~~~~~~~ 439 (515)
.. +..+++
T Consensus 276 ~l-~~~p~~ 283 (633)
T TIGR00805 276 PF-FFFPKA 283 (633)
T ss_pred HH-HhCccc
Confidence 44 444443
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.12 E-value=9.1e-10 Score=108.62 Aligned_cols=133 Identities=12% Similarity=0.145 Sum_probs=115.7
Q ss_pred cchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHhhhhhhhcccchhh
Q psy15227 53 LNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALLCLPTWFLVVSN-KIECLYIARLFIGISKGVAYTAMPI 131 (515)
Q Consensus 53 ~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~ 131 (515)
.++.++|.+.+...++..++.++.+++.||+|+|+.+.++.++..+..++.++. +.+.+++.+++.|+..+...+....
T Consensus 237 ~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~ 316 (382)
T TIGR00902 237 ISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAMR 316 (382)
T ss_pred CCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999888 9999999999999999999999999
Q ss_pred hhhcccccccccccccccc-hhhhHHHHHHHHHhhHH----HhHHHHHhhhHHHHHHHHHh
Q psy15227 132 FIGEISEHNIRGALGSIPS-GFQMVGTLAILLIGNHV----SYNSLNIALSILPVIFFILF 187 (515)
Q Consensus 132 ~i~e~~~~~~r~~~~~~~~-~~~~lG~~~~~~l~~~l----~wr~~f~i~~~~~~~~~~~~ 187 (515)
++.+. |+++|++..++++ ...++|..+++.+++.+ ++ ..|++.++++++.+++.
T Consensus 317 ~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~~ 375 (382)
T TIGR00902 317 YIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFLI 375 (382)
T ss_pred HHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHH
Confidence 99998 8888999888875 46677777777777665 54 55677777666554443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.6e-10 Score=110.53 Aligned_cols=146 Identities=15% Similarity=0.153 Sum_probs=108.9
Q ss_pred ccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHHHHHHHHHHHHH--HHHHh-
Q psy15227 29 IAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALLCLPTW--FLVVS- 105 (515)
Q Consensus 29 ~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~~~~~l~~i~~--~~~~~- 105 (515)
.......+|.+.++ +++ .++.+.+...+...++..++.++.|+++||+|||+.+..+..+..+.. +...+
T Consensus 235 ~~~~~~~~~~~~~~--~~g-----~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~ 307 (394)
T TIGR00883 235 FYLITTYLPTYLTQ--TLG-----LSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALL 307 (394)
T ss_pred HHHHHHHHHHHHHH--hcC-----CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344445554422 366 888899999999999999999999999999999998876554444333 22222
Q ss_pred -h-hhhHHHHHHHHhhhhhhhcccchhhhhhcccccccccccccc-cchhhhHHHHHHHHHhhHH----H-hHHHHHhhh
Q psy15227 106 -N-KIECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSI-PSGFQMVGTLAILLIGNHV----S-YNSLNIALS 177 (515)
Q Consensus 106 -~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~-~~~~~~lG~~~~~~l~~~l----~-wr~~f~i~~ 177 (515)
. +.+.+....++.|++.+...+...+++.|.+|+++|+++.++ .+.+..+|..++|.+++.+ + |+..++..+
T Consensus 308 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~ 387 (394)
T TIGR00883 308 DSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLA 387 (394)
T ss_pred cCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHH
Confidence 2 667777888999999989999999999999999999999998 4555667777777777665 5 877766665
Q ss_pred HHHH
Q psy15227 178 ILPV 181 (515)
Q Consensus 178 ~~~~ 181 (515)
...+
T Consensus 388 ~~~l 391 (394)
T TIGR00883 388 ALAL 391 (394)
T ss_pred HHHH
Confidence 5443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.9e-09 Score=108.96 Aligned_cols=153 Identities=14% Similarity=0.171 Sum_probs=119.2
Q ss_pred HHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCCccHHHHH
Q psy15227 276 SSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYIT 355 (515)
Q Consensus 276 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (515)
.+.+..+..-++...+.......+..++.++++|.++||++||++++.+-.+.++..+.+.+..... ..+.+..++.
T Consensus 33 ~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~---~~~~~~Ll~~ 109 (524)
T PF05977_consen 33 LAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFG---LLSPWLLLIL 109 (524)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhC---cCCHHHHHHH
Confidence 3344444444445666777777788888999999999999999999998887776666555543321 3345666777
Q ss_pred HHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHH
Q psy15227 356 TLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSVVF 431 (515)
Q Consensus 356 ~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 431 (515)
.++.+++.....|...+.+.|++|+++...++++.....++...+||.++|.+....|...+|.+-++..++...+
T Consensus 110 ~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~ 185 (524)
T PF05977_consen 110 TFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILA 185 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777889999999999999999999999999999999999999999999999888887777665554433
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.5e-09 Score=106.11 Aligned_cols=136 Identities=15% Similarity=-0.030 Sum_probs=110.1
Q ss_pred hHHHHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCC
Q psy15227 269 ITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNF 348 (515)
Q Consensus 269 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (515)
......+.|.+.++.+.+..+.+.......++..++.+..|++.||+|||+++..+..+..++.+++..... .++
T Consensus 42 ~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~-----a~~ 116 (438)
T PRK10133 42 NNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE-----IMN 116 (438)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHh-----cCC
Confidence 456667788888888999899999999999999999999999999999999999999999888876532111 345
Q ss_pred ccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy15227 349 QYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILIT 409 (515)
Q Consensus 349 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~ 409 (515)
.+..++..++.+.+.+...+....++.|..|++.|....++.+....+|..+++.+.+.+.
T Consensus 117 ~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 117 YTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666677777888876676777778888877666666789999999999999998876554
|
|
| >KOG2532|consensus | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.8e-09 Score=105.88 Aligned_cols=150 Identities=18% Similarity=0.186 Sum_probs=131.7
Q ss_pred cCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHH
Q psy15227 283 LDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAAS 362 (515)
Q Consensus 283 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 362 (515)
..++..+.+.+......+.+++.+.++++.||+|-|+++..+.++.+++.++.++... ...+..++.-++.|++
T Consensus 68 ~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~------~~~~~~~~~R~lqGl~ 141 (466)
T KOG2532|consen 68 YDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAAS------IGFYLLLVLRFLQGLG 141 (466)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH------hcchhhHHHHHHhHHH
Confidence 4566677888999999999999999999999999999999999999999998887543 3344667777788888
Q ss_pred HhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhh-hchhHHHHHHHHHHHHHHHHHHHHhhc
Q psy15227 363 YYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKS-LGQHVIFFIYSSVHFCSVVFNYFYLME 438 (515)
Q Consensus 363 ~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (515)
.+...|....+.++-.|+++|++..++.....++|.+++-++.|.+.+. .||+..|++.+++.++..++.+.+..+
T Consensus 142 ~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d 218 (466)
T KOG2532|consen 142 QGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSD 218 (466)
T ss_pred HhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcC
Confidence 8888899999999999999999999999999999999999999999998 999999999999999888776666554
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.7e-09 Score=105.72 Aligned_cols=162 Identities=15% Similarity=0.055 Sum_probs=112.7
Q ss_pred HHHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhh-----CCchhH-HHhhHHHHHHHHHHHHHHHhhCC
Q psy15227 271 SMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDIL-----GRKPLS-CFSAALGCLLTFSTGLFYLYQGE 344 (515)
Q Consensus 271 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----grr~~~-~~~~~~~~~~~~~~~~~~~~~~~ 344 (515)
....-.|.+.++.|.+..+.+..... .+...+ .++.|+++||+ |||+.+ ..+.+..++....+.+..
T Consensus 6 ~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~----- 78 (356)
T TIGR00901 6 LVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLV----- 78 (356)
T ss_pred hHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCC-----
Confidence 34456677888889887777777544 333333 88999999998 788864 455555555554544311
Q ss_pred CCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc--------hhH
Q psy15227 345 LPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLG--------QHV 416 (515)
Q Consensus 345 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~g--------~~~ 416 (515)
.....+.......+.+.+.....+...+++.|.+|+++|+.+.++......+|..+++.+.+.+.+..| |+.
T Consensus 79 ~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~ 158 (356)
T TIGR00901 79 PSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGY 158 (356)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHH
Confidence 012223333333344444455567777899999999999999999999999999999999999988888 998
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Q psy15227 417 IFFIYSSVHFCSVVFNYFYLMET 439 (515)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~ 439 (515)
.|++.++..++..+..++..||+
T Consensus 159 ~f~i~ai~~l~~~~~~~~~~~e~ 181 (356)
T TIGR00901 159 IFFWTALLILPGLLVTLFLAKEP 181 (356)
T ss_pred HHHHHHHHHHHHHHHHHHhccCC
Confidence 99888877766555543344543
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.08 E-value=3e-09 Score=105.79 Aligned_cols=186 Identities=13% Similarity=0.012 Sum_probs=123.6
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHh----hhCCchhHHHh-hHHH
Q psy15227 254 FTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMD----ILGRKPLSCFS-AALG 328 (515)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~grr~~~~~~-~~~~ 328 (515)
++.........++. +.....+.+.++++.|.+....+.......+.+++..++.|+++| |+|||+.++.. ....
T Consensus 6 li~~~~~~~Giq~~-~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~ 84 (477)
T TIGR01301 6 LLRVASVAAGVQFG-WALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALV 84 (477)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHH
Confidence 34444444444443 455666777788889999888999999999999999999999999 59999987764 4444
Q ss_pred HHHHHHHHHHHHhhC---C---CCCCc---cHHHHHHHHHHHHHhcccchhhhhhcccccchhh--hhhhhHHHHHHHHH
Q psy15227 329 CLLTFSTGLFYLYQG---E---LPNFQ---YIPYITTLLYAASYYGIGCLPNILVSELFPINVR--CQASSCASVALAFG 397 (515)
Q Consensus 329 ~~~~~~~~~~~~~~~---~---~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r--~~~~g~~~~~~~lg 397 (515)
.+++.+++......+ + ..... +...+...+..+......+...++++|.+|+++| +.+.++.+...++|
T Consensus 85 ~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG 164 (477)
T TIGR01301 85 AFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIG 164 (477)
T ss_pred HHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHH
Confidence 444444443111000 0 00011 1222233333334444445556899999998865 57899999999999
Q ss_pred HHHHHHHHHHH--Hhhh-------------chhHHHHHHHHHHHHHHHHHHHHhhccc
Q psy15227 398 SFITTKFHILI--TKSL-------------GQHVIFFIYSSVHFCSVVFNYFYLMETK 440 (515)
Q Consensus 398 ~~~~~~~~g~l--~~~~-------------g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (515)
+.+++.+.+.. .+.. +.+..|++.+++.+++.++..+..+|..
T Consensus 165 ~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~ 222 (477)
T TIGR01301 165 NVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENP 222 (477)
T ss_pred HHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence 99999988764 2221 4556788888888888777777777754
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.2e-09 Score=109.73 Aligned_cols=141 Identities=13% Similarity=0.102 Sum_probs=105.2
Q ss_pred cchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHh---h--hhhHHHHHHHHhhhhhhhccc
Q psy15227 53 LNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALLCLPTWFLVVS---N--KIECLYIARLFIGISKGVAYT 127 (515)
Q Consensus 53 ~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~~~---~--~~~~l~~~r~l~G~~~g~~~~ 127 (515)
.+......+.....+...++.++.|+++||+|||+++..+.++..++.+.... . +.+.+++..++.|++.+...+
T Consensus 283 ~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 362 (438)
T PRK09952 283 LPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVC 362 (438)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHH
Confidence 77766666666667777889999999999999999998887766555443322 2 344445566777888888888
Q ss_pred chhhhhhccccccccccccccc-chhhhHHHHHHHHHhhHH------HhHHHHHhhhHHHHHHHHHhhcccCc
Q psy15227 128 AMPIFIGEISEHNIRGALGSIP-SGFQMVGTLAILLIGNHV------SYNSLNIALSILPVIFFILFSFVPET 193 (515)
Q Consensus 128 ~~~~~i~e~~~~~~r~~~~~~~-~~~~~lG~~~~~~l~~~l------~wr~~f~i~~~~~~~~~~~~~~~pes 193 (515)
...+++.|.+|.+.|+...++. ..+..+|..++|.+.+.+ +|+..+...++..++..+..+.++|+
T Consensus 363 ~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~ 435 (438)
T PRK09952 363 VQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLMKDN 435 (438)
T ss_pred HHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcccc
Confidence 8899999999999998888874 444557888888777665 37888887777777776666666664
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.08 E-value=3e-09 Score=105.73 Aligned_cols=168 Identities=10% Similarity=0.043 Sum_probs=123.0
Q ss_pred HHhhchHHHHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhh-----CCch-hHHHhhHHHHHHHHHHHH
Q psy15227 264 QRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDIL-----GRKP-LSCFSAALGCLLTFSTGL 337 (515)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----grr~-~~~~~~~~~~~~~~~~~~ 337 (515)
.+.........-.|.++++.|++..+.+........ .+..++.|+++||+ |||+ .+..+....+++...+.+
T Consensus 10 ~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~ 87 (402)
T PRK11902 10 ASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAF 87 (402)
T ss_pred HHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHh
Confidence 333445667778899999999998888887665554 68889999999999 7765 676767777666666554
Q ss_pred HHHhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhh-hchhH
Q psy15227 338 FYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKS-LGQHV 416 (515)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~-~g~~~ 416 (515)
.. ...+.+...+..++.+.......+...+++.|.+|+++|+++.++......+|..+++.+.+.+.+. .||+.
T Consensus 88 ~~-----~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~ 162 (402)
T PRK11902 88 CP-----PHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGN 162 (402)
T ss_pred cC-----ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHH
Confidence 11 0122333444444445444666778889999999999999999999999999999999999998885 49999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Q psy15227 417 IFFIYSSVHFCSVVFNYFYLMET 439 (515)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~ 439 (515)
.|++.+++.++..+. .+..+|+
T Consensus 163 ~f~i~a~~~l~~~l~-~~~~~e~ 184 (402)
T PRK11902 163 TYLLMAGLMLAGALT-TLWAPEP 184 (402)
T ss_pred HHHHHHHHHHHHHHH-HHhcCCC
Confidence 998888877665443 2444443
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.9e-09 Score=107.51 Aligned_cols=152 Identities=16% Similarity=0.177 Sum_probs=118.5
Q ss_pred HHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCCccHHHH
Q psy15227 275 YSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYI 354 (515)
Q Consensus 275 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (515)
-.+.+..+.|-+ ....++.....+...++.++.|.++|.+|||..++.+.++..++.++.+- .++....+.
T Consensus 66 ~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~at--------A~~~~~~ia 136 (599)
T PF06609_consen 66 ILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCAT--------AQNMNTFIA 136 (599)
T ss_pred HHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhc--------CCcHHHHHH
Confidence 345566677766 56667778888999999999999999999999999999999999988776 667777788
Q ss_pred HHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHH
Q psy15227 355 TTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFNYF 434 (515)
Q Consensus 355 ~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 434 (515)
...+.+++.+.. ......++|..|.+.|..+.++.....-.....++.+...+..+.+||+.|++.++...++.+..++
T Consensus 137 g~~l~GvgaG~~-~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~ 215 (599)
T PF06609_consen 137 GMVLYGVGAGVQ-ELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIFF 215 (599)
T ss_pred HHHHHHHhhHHH-HHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHH
Confidence 888888776333 3345668999999999888777766555555567777767666779999999998887777666555
Q ss_pred Hh
Q psy15227 435 YL 436 (515)
Q Consensus 435 ~~ 436 (515)
++
T Consensus 216 fY 217 (599)
T PF06609_consen 216 FY 217 (599)
T ss_pred Hh
Confidence 54
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.2e-09 Score=103.69 Aligned_cols=146 Identities=12% Similarity=0.023 Sum_probs=111.9
Q ss_pred HHHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCCcc
Q psy15227 271 SMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQY 350 (515)
Q Consensus 271 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (515)
......|.+.++.|.+..+.+...+...++..++.+..|+++||+|||+.+..+..+..++.+.. . .++.+
T Consensus 18 ~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~--------~~~~~ 88 (355)
T TIGR00896 18 SVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-S--------APGTA 88 (355)
T ss_pred cCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-H--------hccHH
Confidence 34456778888889998899999999999999999999999999999999888877766655443 2 23445
Q ss_pred HHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc--hhHHHHHHHHHHH
Q psy15227 351 IPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLG--QHVIFFIYSSVHF 426 (515)
Q Consensus 351 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~g--~~~~~~~~~~~~~ 426 (515)
...+..++.+++.+...+.....+.|.+| ++|+++.+..+....+|..+++.+.+.+.+..+ |+..+...+++.+
T Consensus 89 ~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~ 165 (355)
T TIGR00896 89 LLFAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPAL 165 (355)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 55555556666664444555567778876 579999999999999999999999998887653 7767766655443
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.1e-08 Score=115.67 Aligned_cols=143 Identities=10% Similarity=0.038 Sum_probs=102.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhcccch
Q psy15227 290 PDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCL 369 (515)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 369 (515)
.+.......+..++.++++|+++||++||+++.....+..+.......... ..+.+..+++.++.+++.....|.
T Consensus 54 ~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~-----~~s~~~l~~~~~l~gi~~a~~~p~ 128 (1140)
T PRK06814 54 VTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFH-----LNSVPLLFAALFLMGIHSALFGPI 128 (1140)
T ss_pred HHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH-----HhhHHHHHHHHHHHHHHHHhhchH
Confidence 445556677888899999999999999999764322222221111111111 244567777777888877888899
Q ss_pred hhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHhhc
Q psy15227 370 PNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFNYFYLME 438 (515)
Q Consensus 370 ~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (515)
..+++.+.+|++.|+.++|+.++...+|..++|.+.|.+.+..+|+..|...+...+++ ++..+..++
T Consensus 129 ~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 196 (1140)
T PRK06814 129 KYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLG-WLASLFIPK 196 (1140)
T ss_pred HHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH-HHHHhhCCC
Confidence 99999999999999999999999999999999999999999999987773333333333 333344443
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=99.00 E-value=9.6e-09 Score=92.63 Aligned_cols=171 Identities=19% Similarity=0.182 Sum_probs=127.7
Q ss_pred HHHHHHHHHHHHHhhhhhccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHHH
Q psy15227 11 QIIATNTASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLL 90 (515)
Q Consensus 11 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~ 90 (515)
||..+..........|..+... ..-|++++ .+| +|.+|...+.+.-.+|..+| ++.|.+.|++|++.++.
T Consensus 1 rW~~l~a~~~v~~~~Gt~Y~Fs-~yS~~Lk~---~l~-----~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~ 70 (250)
T PF06813_consen 1 RWLSLVASIWVQLCSGTTYTFS-AYSPQLKS---RLG-----YSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLL 70 (250)
T ss_pred ChhhHHHHHHHHHhcCcccchh-hhhHHHHH---HhC-----CCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHH
Confidence 4666666666665555443332 22344444 488 99999999999999999875 88999999999999999
Q ss_pred HHHHHHHHHHHHHHhh--------hhhHHHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhhhHHHHHHHH
Q psy15227 91 LNALLCLPTWFLVVSN--------KIECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILL 162 (515)
Q Consensus 91 ~~~~l~~i~~~~~~~~--------~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~ 162 (515)
+|.+...+|..+...+ ++|.+.+..++.|.+.+....++.....+.||+ +||.+.++.-...+++..+-..
T Consensus 71 iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG~vvgilk~~~GLSaai~t~ 149 (250)
T PF06813_consen 71 IGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-SRGTVVGILKGFFGLSAAIFTQ 149 (250)
T ss_pred HHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-ccCceehhhhHHHHhHHHHHHH
Confidence 9999999999888775 367888888899888887777777777788975 6999999999999998887766
Q ss_pred HhhHH----HhHHHHHhhhHHHHHHHHHhhcccC
Q psy15227 163 IGNHV----SYNSLNIALSILPVIFFILFSFVPE 192 (515)
Q Consensus 163 l~~~l----~wr~~f~i~~~~~~~~~~~~~~~pe 192 (515)
+...+ .-+..+.+...+.++.++..+++++
T Consensus 150 i~~~~f~~~~~~fll~la~~~~~v~l~~~~~vr~ 183 (250)
T PF06813_consen 150 IYSAFFGDDPSSFLLFLAVLPAVVCLVAMFFVRP 183 (250)
T ss_pred HHHHHcCCChHHHHHHHHHHHHHHHHHHhhheec
Confidence 66555 2344444444455555555555543
|
|
| >KOG0252|consensus | Back alignment and domain information |
|---|
Probab=98.98 E-value=7.1e-09 Score=98.44 Aligned_cols=120 Identities=13% Similarity=-0.028 Sum_probs=87.9
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHh
Q psy15227 285 NAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYY 364 (515)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 364 (515)
++....+.......++.++|+++.|++.||+|||+++...++++.++.++.++... .+.+..-.+.....=.+.|++.+
T Consensus 81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~-~~~~~~~m~~L~~~R~~LGiGIG 159 (538)
T KOG0252|consen 81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVG-TTSPLGVMMTLCFFRFLLGIGIG 159 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCC-CCCCcchhhHHHHHHHHhhcccc
Confidence 33345556777788899999999999999999999999999999888885554221 10111122333444556677778
Q ss_pred cccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHH
Q psy15227 365 GIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFH 405 (515)
Q Consensus 365 ~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~ 405 (515)
+-.|+..+..+|....+.||+-.+...+.+.+|...|..+.
T Consensus 160 GDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt 200 (538)
T KOG0252|consen 160 GDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVA 200 (538)
T ss_pred CCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHH
Confidence 88999999999999999999998888777776665555444
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.7e-08 Score=102.68 Aligned_cols=163 Identities=10% Similarity=0.104 Sum_probs=114.7
Q ss_pred hHHHHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhh-----CCchh-HHHhhHHHHHHHHHHHHHHHhh
Q psy15227 269 ITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDIL-----GRKPL-SCFSAALGCLLTFSTGLFYLYQ 342 (515)
Q Consensus 269 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----grr~~-~~~~~~~~~~~~~~~~~~~~~~ 342 (515)
........|.++++.|.+..+.+.... .+.. .++.++.++++||+ |||+. +..+.+..+++...++...
T Consensus 28 ~~~~~~~l~~~l~~~g~~~~~ig~~~~-~~~~-~~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~--- 102 (491)
T PRK11010 28 LALTSGTLQAWMTVENIDLKTIGFFSL-VGQA-YVFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLE--- 102 (491)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHH-HHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcC---
Confidence 445556678888888877555555422 2222 26889999999999 98885 5566666656655554411
Q ss_pred CCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHh-hhchhHHHHHH
Q psy15227 343 GELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITK-SLGQHVIFFIY 421 (515)
Q Consensus 343 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~-~~g~~~~~~~~ 421 (515)
+.++.+...+...+.+++.....+...++..|.+|+++|+++.++......+|..+++.+.+.+.+ ..||+..|++.
T Consensus 103 --~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~ 180 (491)
T PRK11010 103 --PGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLM 180 (491)
T ss_pred --CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHH
Confidence 122333444444555555566666777899999999999999999999999999999999999998 47999999998
Q ss_pred HHHHHHHHHHHHHHhhcc
Q psy15227 422 SSVHFCSVVFNYFYLMET 439 (515)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~ 439 (515)
++..++..+.. +..||+
T Consensus 181 a~l~ll~~l~~-~~~~e~ 197 (491)
T PRK11010 181 AALLIPCIIAT-LLAPEP 197 (491)
T ss_pred HHHHHHHHHHH-HhcCCC
Confidence 88777665544 334543
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=98.94 E-value=8.8e-09 Score=103.07 Aligned_cols=143 Identities=17% Similarity=0.130 Sum_probs=126.3
Q ss_pred cccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhh--HHHHHHHHHHHHHHHHHHh--------h-hhhHHHH
Q psy15227 45 DLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRK--TTLLLNALLCLPTWFLVVS--------N-KIECLYI 113 (515)
Q Consensus 45 ~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr--~~l~~~~~l~~i~~~~~~~--------~-~~~~l~~ 113 (515)
+++ ++..+...+.-...+..++|++++|++.||+|.| ++++++++++.+..+...+ . +-+.+.+
T Consensus 311 ~lg-----~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~ 385 (477)
T PF11700_consen 311 VLG-----MSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWV 385 (477)
T ss_pred hcC-----cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHH
Confidence 477 9999999999999999999999999999999999 8999998888666666665 4 8889999
Q ss_pred HHHHhhhhhhhcccchhhhhhcccccccccccccccchhhhHHHHHHHHHhhHH-----HhHHHHHhhhHHHHHHHHHhh
Q psy15227 114 ARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHV-----SYNSLNIALSILPVIFFILFS 188 (515)
Q Consensus 114 ~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~l-----~wr~~f~i~~~~~~~~~~~~~ 188 (515)
.-++.|+..|...+.+.++.+|+.|+++.+..+|++....-....+||++.+.+ +-|+.+....++.++.+++.+
T Consensus 386 ~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~ 465 (477)
T PF11700_consen 386 LAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLF 465 (477)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999988776 478888877777777777776
Q ss_pred cccC
Q psy15227 189 FVPE 192 (515)
Q Consensus 189 ~~pe 192 (515)
++++
T Consensus 466 ~v~~ 469 (477)
T PF11700_consen 466 FVDV 469 (477)
T ss_pred hccc
Confidence 6654
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.5e-08 Score=98.47 Aligned_cols=151 Identities=11% Similarity=0.034 Sum_probs=107.9
Q ss_pred hHHHHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhH-HHHHHHHHHHHHHHhhCCCCC
Q psy15227 269 ITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAA-LGCLLTFSTGLFYLYQGELPN 347 (515)
Q Consensus 269 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 347 (515)
......++|.++++.|.+..+.+...+...+...++.++.|+++||+||+....-... ...+....+.. . .+
T Consensus 20 ~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~--~-----~~ 92 (382)
T PRK11128 20 YGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLFAVAFWF--G-----AH 92 (382)
T ss_pred HHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHH--h-----cc
Confidence 4566677788889999999999999999999999999999999999998532211111 11111111111 1 34
Q ss_pred CccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHH
Q psy15227 348 FQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFC 427 (515)
Q Consensus 348 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~ 427 (515)
+.|...+...+.+.+.....|...++..+. .++|+.+.+.......+|..++|.+.+.+.++.||+..+++.++..++
T Consensus 93 ~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~ 170 (382)
T PRK11128 93 SFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVAS 170 (382)
T ss_pred cHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHH
Confidence 455555555556666666667666666665 356888999999999999999999999999999999888777654444
Q ss_pred H
Q psy15227 428 S 428 (515)
Q Consensus 428 ~ 428 (515)
.
T Consensus 171 ~ 171 (382)
T PRK11128 171 M 171 (382)
T ss_pred H
Confidence 3
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.5e-08 Score=97.96 Aligned_cols=145 Identities=17% Similarity=0.109 Sum_probs=122.5
Q ss_pred cCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhh-CCchhHHHhhHHHHHHHHHHHHHHHhhCCCC--CCccHHHHHHHHH
Q psy15227 283 LDNAYFGPDQCILVFMIIMFLSNFLQAPLMDIL-GRKPLSCFSAALGCLLTFSTGLFYLYQGELP--NFQYIPYITTLLY 359 (515)
Q Consensus 283 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~ 359 (515)
+|++..++......+....-+..+++||++||+ |+|+++..+.++++++.++++. + .......+.+.+.
T Consensus 56 Lg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~--------~~~~~~~gl~i~L~~I 127 (498)
T COG3104 56 LGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAI--------SSVSGPGGLYIGLALI 127 (498)
T ss_pred CCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhc--------cccccccHHHHHHHHH
Confidence 458878888888888888888999999999994 9999999999999999999987 3 2455666777777
Q ss_pred HHHHhcccchhhhhhcccccch--hhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHH
Q psy15227 360 AASYYGIGCLPNILVSELFPIN--VRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFNYFY 435 (515)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~p~~--~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 435 (515)
.++.+..-|...+++.|++|++ +|..++++..+..++|+.++|.+.+++.+..||+..|...++-..++.+..++.
T Consensus 128 ~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~ 205 (498)
T COG3104 128 IVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLG 205 (498)
T ss_pred HhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHc
Confidence 7777888888889999999864 477888888999999999999999999999999999988888888777765443
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.5e-08 Score=102.00 Aligned_cols=114 Identities=14% Similarity=0.198 Sum_probs=96.9
Q ss_pred chhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHhhhhhhhcccchhh
Q psy15227 54 NKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALLCLPTWFLVVSN--KIECLYIARLFIGISKGVAYTAMPI 131 (515)
Q Consensus 54 s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~--~~~~l~~~r~l~G~~~g~~~~~~~~ 131 (515)
++.+.+++.+...++..++.+++++++||+|||+++..+.++..++.+...+. +.+.+++..++.|++.+...+...+
T Consensus 255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 334 (437)
T TIGR00792 255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWA 334 (437)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888899999999999999999999999999998888888777665 6677788889999999999999999
Q ss_pred hhhcccc-------cccccccccccchhhhHHHHHHHHHhhHH
Q psy15227 132 FIGEISE-------HNIRGALGSIPSGFQMVGTLAILLIGNHV 167 (515)
Q Consensus 132 ~i~e~~~-------~~~r~~~~~~~~~~~~lG~~~~~~l~~~l 167 (515)
+++|..+ ++++|.+.++.+....+|..+++.+.+.+
T Consensus 335 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~l 377 (437)
T TIGR00792 335 LVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLI 377 (437)
T ss_pred HHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998865 45578899999999999988888877654
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.7e-08 Score=112.73 Aligned_cols=117 Identities=14% Similarity=0.100 Sum_probs=93.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhcccch
Q psy15227 290 PDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCL 369 (515)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 369 (515)
.+...+...+..++++++.|+++||+|||+++..+..+..+..++..+... .++.+..++..++.+++.+...+.
T Consensus 49 ~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~r~l~G~~~~~~~~~ 123 (1146)
T PRK08633 49 TAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYY-----LGWFWLAFAVTFLLGAQSAIYSPA 123 (1146)
T ss_pred HHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHH-----HccHHHHHHHHHHHHHHHHhhchH
Confidence 455666777888999999999999999999998877665555544433222 233556666666777777777888
Q ss_pred hhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q psy15227 370 PNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKS 411 (515)
Q Consensus 370 ~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~ 411 (515)
..+++.|.+|++.|++++|+......+|.++++.+.+.+.+.
T Consensus 124 ~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 124 KYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred HHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 889999999999999999999999999999999999998876
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.5e-08 Score=100.60 Aligned_cols=135 Identities=10% Similarity=0.147 Sum_probs=110.2
Q ss_pred cchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHhhhhhhhcccchhh
Q psy15227 53 LNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALLCLPTWFLVVSN-KIECLYIARLFIGISKGVAYTAMPI 131 (515)
Q Consensus 53 ~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~ 131 (515)
.+....|.+.+...+...++.+..|++.||+|||+.+.++.++.+++..+.... +.+.+++.+++.|++.+........
T Consensus 251 ~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~ 330 (396)
T TIGR00882 251 QGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFK 330 (396)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556678999999999999999999999999999999999999888888877778 8888899999999988776666666
Q ss_pred hhhcccccccccccccc-cchhhhHHHHHHHHHhhHH----HhHHHHHhhhHHHHHHHHHh
Q psy15227 132 FIGEISEHNIRGALGSI-PSGFQMVGTLAILLIGNHV----SYNSLNIALSILPVIFFILF 187 (515)
Q Consensus 132 ~i~e~~~~~~r~~~~~~-~~~~~~lG~~~~~~l~~~l----~wr~~f~i~~~~~~~~~~~~ 187 (515)
++.+..+++.++...+. .+....+|..+++.+++.+ ||+..|.+.+++.++..+..
T Consensus 331 ~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~ 391 (396)
T TIGR00882 331 YITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLIS 391 (396)
T ss_pred HHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 77777787777776665 5667777877777666555 88999999888876665543
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.3e-08 Score=96.30 Aligned_cols=174 Identities=16% Similarity=0.152 Sum_probs=142.3
Q ss_pred HHHHHHHHHHHHHHhhhhhccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHH
Q psy15227 10 YQIIATNTASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTL 89 (515)
Q Consensus 10 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l 89 (515)
++-+..++..-..+.||.+.-...... +. .+++| ++..+..++.-...+..++|++++|+|.||+|.|+++
T Consensus 251 ~~~i~~FLiA~~~~~DGv~til~~~~~--fg--~~~~g-----ls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl 321 (438)
T COG2270 251 RKNLVLFLIARFFYIDGVNTILAMGGV--FG--AADLG-----LSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVL 321 (438)
T ss_pred ccchHHHHHHHHHHHhhHHHHHHHHHH--HH--HHHcC-----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceee
Confidence 344556666666677777654433221 11 22578 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhh-hhhHHHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhhhHHHHHHHHHhhHH-
Q psy15227 90 LLNALLCLPTWFLVVSN-KIECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHV- 167 (515)
Q Consensus 90 ~~~~~l~~i~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~l- 167 (515)
.++.++..+.++...+. .-..+.+.-.+.|...|+....+.++..+..|+++-++.+|+++...-.+..+||.+...+
T Consensus 322 ~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t 401 (438)
T COG2270 322 MIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVIT 401 (438)
T ss_pred hHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHH
Confidence 99999999999988888 7677777788999999999999999999999999999999999999999999999988776
Q ss_pred ----HhHHHHHhhhHHHHHHHHHhhcccC
Q psy15227 168 ----SYNSLNIALSILPVIFFILFSFVPE 192 (515)
Q Consensus 168 ----~wr~~f~i~~~~~~~~~~~~~~~pe 192 (515)
+-|.-+....++..+.++..+.+|+
T Consensus 402 ~iTg~~r~g~~~i~vll~iGl~~L~~v~~ 430 (438)
T COG2270 402 QITGSSRAGVLSIIVLLLIGLLLLLRVKV 430 (438)
T ss_pred HHhcchhhHHHHHHHHHHhhHhhEEeecC
Confidence 5677666666666666666666665
|
|
| >KOG0255|consensus | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.7e-08 Score=101.45 Aligned_cols=144 Identities=19% Similarity=0.147 Sum_probs=121.3
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHH
Q psy15227 284 DNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASY 363 (515)
Q Consensus 284 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 363 (515)
..+........++..++..+|.++.|+++||+|||+++..+..+..++.++.++ ..+.+...+.-++.|++.
T Consensus 114 c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~--------a~~~~~~~~~Rfl~G~~~ 185 (521)
T KOG0255|consen 114 CDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAF--------APNYWMFLIFRFLSGFFG 185 (521)
T ss_pred eCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHH--------hCcHHHHHHHHHHHHhhc
Confidence 334456667788899999999999999999999999999999999999888777 677788888888888888
Q ss_pred hcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHhhcc
Q psy15227 364 YGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFNYFYLMET 439 (515)
Q Consensus 364 ~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (515)
.+...+...+..|.++++.|+.+..+ ..+...++.+++...+++.. +|++.+++......+..+. +++.+|.
T Consensus 186 ~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~Es 257 (521)
T KOG0255|consen 186 SGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFLPPES 257 (521)
T ss_pred cchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHccCcC
Confidence 88888888999999999999999999 88889999999999998887 7888888877777766555 3444454
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.5e-07 Score=88.44 Aligned_cols=135 Identities=13% Similarity=-0.016 Sum_probs=110.8
Q ss_pred HHHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCCcc
Q psy15227 271 SMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQY 350 (515)
Q Consensus 271 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (515)
......|.+.+....+..+++........+..++++..+++.+|+|+|+.+..++.++++++.++.-... .....
T Consensus 31 l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~-----~~~y~ 105 (422)
T COG0738 31 LNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAAS-----SKSYG 105 (422)
T ss_pred cchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhh-----hhhHH
Confidence 3344566666667888889999999999999999999999999999999999999999999888643211 23344
Q ss_pred HHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q psy15227 351 IPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITK 410 (515)
Q Consensus 351 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~ 410 (515)
..++..++.+.+.+......+.++..+.|++..+.-+.+...++.+|.+++|.+.+.+..
T Consensus 106 ~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lil 165 (422)
T COG0738 106 FFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLIL 165 (422)
T ss_pred HHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 555666666767677778888999999998877888999999999999999999998887
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.2e-08 Score=98.00 Aligned_cols=134 Identities=14% Similarity=0.079 Sum_probs=101.9
Q ss_pred cchhhHHHHHHHHH-HHhhhhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHh------h-hhhHHHHHHHHhhhhhhh
Q psy15227 53 LNKYQLSWMVSLLD-LGNAISPIFAGILVEKIGRKTTLLLNALLCLPTWFLVVS------N-KIECLYIARLFIGISKGV 124 (515)
Q Consensus 53 ~s~~~~~~~~s~~~-lg~~i~~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~~~------~-~~~~l~~~r~l~G~~~g~ 124 (515)
.+++++|++.+... ....++.++.|++.||+|+|+.+..+..+.++..+.... . +...+.....+.+++.+.
T Consensus 240 ~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 319 (390)
T TIGR02718 240 WPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITGI 319 (390)
T ss_pred CCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHH
Confidence 89999999988876 467778999999999999999998877665443333221 1 223344555666777787
Q ss_pred cccchhhhhhccccc-ccccccccccchhhhHHHHHHHHHhhHH----HhHHHHHhhhHHHHHHHHH
Q psy15227 125 AYTAMPIFIGEISEH-NIRGALGSIPSGFQMVGTLAILLIGNHV----SYNSLNIALSILPVIFFIL 186 (515)
Q Consensus 125 ~~~~~~~~i~e~~~~-~~r~~~~~~~~~~~~lG~~~~~~l~~~l----~wr~~f~i~~~~~~~~~~~ 186 (515)
..+...+...+..++ +++++.+++.+...++|..++|.+++.+ ||+..|+..+++.++..+.
T Consensus 320 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~~ 386 (390)
T TIGR02718 320 TSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAILL 386 (390)
T ss_pred HHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence 778888887777776 7889999999999999999998888765 7888888887776665444
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.9e-06 Score=83.14 Aligned_cols=131 Identities=10% Similarity=-0.008 Sum_probs=89.7
Q ss_pred HHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCC--CCCccH
Q psy15227 274 TYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGEL--PNFQYI 351 (515)
Q Consensus 274 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 351 (515)
..+..|+...|+++...+..-....+.++.|+++..++.+|+|..+.-.++......+..+.......+.++ ......
T Consensus 279 ~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~ 358 (432)
T PF06963_consen 279 GLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYL 358 (432)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHH
Confidence 344455666799988888999999999999999999999999998887787777766665554444332211 111122
Q ss_pred HHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHH
Q psy15227 352 PYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKF 404 (515)
Q Consensus 352 ~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~ 404 (515)
...++.+--+|.=++--...-++.|..|+++||+..|.-+..+++...+.-.+
T Consensus 359 l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~ 411 (432)
T PF06963_consen 359 LLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVL 411 (432)
T ss_pred HHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 22233333333322223445678899999999999999999888877766544
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=5.3e-08 Score=98.31 Aligned_cols=115 Identities=22% Similarity=0.165 Sum_probs=93.4
Q ss_pred cchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHhhhhhhhcccch
Q psy15227 53 LNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALLCLPTWFLVVSN---KIECLYIARLFIGISKGVAYTAM 129 (515)
Q Consensus 53 ~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~---~~~~l~~~r~l~G~~~g~~~~~~ 129 (515)
.++...++......++..++.++++++.||+|+|+++.++.++..++.++..+. +.+.+.+..++.|+|.+...+..
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~ 340 (448)
T PRK09848 261 DTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVM 340 (448)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555567788899999999999999999999998888888777664 67777778889999999999999
Q ss_pred hhhhhcccccc-------cccccccccchhhhHHHHHHHHHhhHH
Q psy15227 130 PIFIGEISEHN-------IRGALGSIPSGFQMVGTLAILLIGNHV 167 (515)
Q Consensus 130 ~~~i~e~~~~~-------~r~~~~~~~~~~~~lG~~~~~~l~~~l 167 (515)
.++..|..|.+ ++|...++.+....+|..+++.+.+.+
T Consensus 341 ~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~ 385 (448)
T PRK09848 341 WALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFI 385 (448)
T ss_pred HHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988754 348888899988888888887776543
|
|
| >KOG4332|consensus | Back alignment and domain information |
|---|
Probab=98.83 E-value=7.2e-08 Score=84.92 Aligned_cols=298 Identities=15% Similarity=0.084 Sum_probs=158.5
Q ss_pred cchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhh----hhhHHHHHHHHhhhhhhhcccc
Q psy15227 53 LNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALLCLPTWFLVVSN----KIECLYIARLFIGISKGVAYTA 128 (515)
Q Consensus 53 ~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~----~~~~l~~~r~l~G~~~g~~~~~ 128 (515)
..+.++|.+.-..+-..++...+.|.++|+-|||+.-+. +.+..++++.. +|-.++++|.+.|++.+..+.+
T Consensus 69 FgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvt----ycitYiLsCiTKhSpqYkVLmVGR~LGGiaTsLLFSa 144 (454)
T KOG4332|consen 69 FGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVT----YCITYILSCITKHSPQYKVLMVGRVLGGIATSLLFSA 144 (454)
T ss_pred ccCCccceeeecccchHHHHHHHHHHHHhhhccccceee----ehHHHHHHHHhhcCCceEEEeehhhhhhHHHHHHHHH
Confidence 677788887777777778888899999999999996544 44444444444 8899999999999999999888
Q ss_pred hhhh-hhcccccccccccccccch--------hhhHHHHHHHHHhhHH-Hh-----HHHHHhhhHHHHHHHHHhhcccCc
Q psy15227 129 MPIF-IGEISEHNIRGALGSIPSG--------FQMVGTLAILLIGNHV-SY-----NSLNIALSILPVIFFILFSFVPET 193 (515)
Q Consensus 129 ~~~~-i~e~~~~~~r~~~~~~~~~--------~~~lG~~~~~~l~~~l-~w-----r~~f~i~~~~~~~~~~~~~~~pes 193 (515)
-.++ +.|.-+ +|+.-.-+... +.++-.+++++.+..+ +| -.+|-..+.+..+...+.+-
T Consensus 145 FEsWliaEHne--kr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLaigmAvil~---- 218 (454)
T KOG4332|consen 145 FESWLIAEHNE--KRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAIGMAVILS---- 218 (454)
T ss_pred HHHHHHHHhhh--ccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHh----
Confidence 8776 445432 34432222221 1222223333333332 22 33444333332222222211
Q ss_pred chhhhhcCChhHHHHHHHhhcCCCcChHHHHHHHHHHhhhhhhchhhhhhhhccccchhHHHHHHHHHHHHHhhchHHHH
Q psy15227 194 PHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMI 273 (515)
Q Consensus 194 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (515)
.|-..-++..+.++.+.+. +...+.+..+ .+..+++ .+........+....
T Consensus 219 -~W~ENygdps~~kdlltqf------------------------~gaa~aiaSD---~ki~LLG-~iqsLFE~smytFVF 269 (454)
T KOG4332|consen 219 -SWSENYGDPSENKDLLTQF------------------------KGAARAIASD---EKIALLG-AIQSLFEGSMYTFVF 269 (454)
T ss_pred -hhhhccCChhhhHHHHHHh------------------------hHhHHHHhcc---hHHHHHH-HHHHHHhhhhheeee
Confidence 1221122222211111110 0111112221 1112222 222222222222233
Q ss_pred HHHHhhhc-ccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCc--hhHHHhhHHHHHHHHHHHHHHHhhCCCCCCcc
Q psy15227 274 TYSSTLLP-KLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRK--PLSCFSAALGCLLTFSTGLFYLYQGELPNFQY 350 (515)
Q Consensus 274 ~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (515)
.|.|.+-. +.+ .--|.+...+.+...+|+-+..++..|-..| ..+.+.+.+..+.+.+..+..... +...+..
T Consensus 270 LWTPaLspn~e~---iPhGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vs-P~kes~~ 345 (454)
T KOG4332|consen 270 LWTPALSPNDEE---IPHGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVS-PSKESPS 345 (454)
T ss_pred eecccCCCCccc---CCchhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccC-CCcCCch
Confidence 34444321 112 3446677777888888888887777664433 345555555554444433322211 1123444
Q ss_pred HHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHH
Q psy15227 351 IPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVA 393 (515)
Q Consensus 351 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~ 393 (515)
...+..+++-...+..+|...-+-++..|++.|++.+-....-
T Consensus 346 ~s~i~F~~~E~cvGlfwPSimkmRsqyIPEearstimNfFRvP 388 (454)
T KOG4332|consen 346 ESLIGFCLFEACVGLFWPSIMKMRSQYIPEEARSTIMNFFRVP 388 (454)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHhhCCHHHHhhhhhheech
Confidence 5566667777777888888888888999999998876655433
|
|
| >KOG2533|consensus | Back alignment and domain information |
|---|
Probab=98.83 E-value=2e-08 Score=100.15 Aligned_cols=153 Identities=13% Similarity=0.011 Sum_probs=122.0
Q ss_pred cccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHH
Q psy15227 281 PKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYA 360 (515)
Q Consensus 281 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 360 (515)
++.++...+.+...+.+.++.+++.+.++.+.||++-.+.+....++.++..++-.. .++.+..++.-++.|
T Consensus 74 edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~--------~~s~~~~ialr~llG 145 (495)
T KOG2533|consen 74 EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAA--------VHSFPGLIALRFLLG 145 (495)
T ss_pred cccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHH--------HhhhHHHHHHHHHHH
Confidence 444566678889999999999999999999999999555554444433333322222 234566777778888
Q ss_pred HHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHH------hhhchhHHHHHHHHHHHHHHHHHHH
Q psy15227 361 ASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILIT------KSLGQHVIFFIYSSVHFCSVVFNYF 434 (515)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~------~~~g~~~~~~~~~~~~~~~~~~~~~ 434 (515)
+..++..|....+++..+.+++|+..+|+.+....+|+++++.+...+. ...||++.|++-++++++..+++++
T Consensus 146 l~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~ 225 (495)
T KOG2533|consen 146 LFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFF 225 (495)
T ss_pred HHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEE
Confidence 8888888999999999999999999999999999999999999988763 3468999999999999999998888
Q ss_pred Hhhcccc
Q psy15227 435 YLMETKQ 441 (515)
Q Consensus 435 ~~~~~~~ 441 (515)
++|+...
T Consensus 226 ~lp~~P~ 232 (495)
T KOG2533|consen 226 FLPDNPS 232 (495)
T ss_pred EecCChh
Confidence 8876544
|
|
| >KOG0569|consensus | Back alignment and domain information |
|---|
Probab=98.81 E-value=6.4e-08 Score=95.37 Aligned_cols=143 Identities=15% Similarity=0.132 Sum_probs=103.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhcccchhh
Q psy15227 292 QCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPN 371 (515)
Q Consensus 292 ~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 371 (515)
.......+++++|++..++++||+|||..+.++.++..++.++...... .+.....++.-++.|...+.......
T Consensus 64 ~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~-----~~~~e~li~GR~i~Gl~~gl~~~~~p 138 (485)
T KOG0569|consen 64 LIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKS-----APSFEMLILGRLIVGLACGLSTGLVP 138 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHH-----hhhHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4456677899999999999999999999988888888777777665444 44556677777777777755566666
Q ss_pred hhhcccccchhhhhhhhHHHHHHHHHHHHHHHHH-HHHH-hhhchhHHHHHHHHHHHHHHHHHHHHhhccc
Q psy15227 372 ILVSELFPINVRCQASSCASVALAFGSFITTKFH-ILIT-KSLGQHVIFFIYSSVHFCSVVFNYFYLMETK 440 (515)
Q Consensus 372 ~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~-g~l~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (515)
.++.|+.|++.||....+......+|..++..+. ..+. +...|...+....+.+++..+. ..+.||+.
T Consensus 139 myl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~-l~~~PESP 208 (485)
T KOG0569|consen 139 MYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLAL-LPFLPESP 208 (485)
T ss_pred HHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHH-HhcCCCCc
Confidence 8999999999999999999998888888885544 3333 2334555555555555544443 45667653
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.1e-07 Score=88.21 Aligned_cols=131 Identities=15% Similarity=0.125 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHhhhhhhhcccchhhhhhcc
Q psy15227 58 LSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALLCLPTWFLVVSN-KIECLYIARLFIGISKGVAYTAMPIFIGEI 136 (515)
Q Consensus 58 ~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~ 136 (515)
.+.+.-+-.+...+.-+.+.+..+|+..+.=.....++..++.++.+++ +.+.=+++-.+.+++.|.....-..+.. .
T Consensus 61 t~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~ 139 (402)
T PF02487_consen 61 TGAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-F 139 (402)
T ss_pred chHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-h
Confidence 3445555566677777778888899876555666677888899999999 9999899999999999988877777644 5
Q ss_pred cccccccccccccchhhhHHHHHHHHHhhHH-----HhHHHHHhhhHHHHHHHHHhhc-ccCc
Q psy15227 137 SEHNIRGALGSIPSGFQMVGTLAILLIGNHV-----SYNSLNIALSILPVIFFILFSF-VPET 193 (515)
Q Consensus 137 ~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~l-----~wr~~f~i~~~~~~~~~~~~~~-~pes 193 (515)
+++ ...+-++.|.+.+.++|+..-..+ +-|..+.+..++.++.++..++ +|++
T Consensus 140 y~~----~~l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~~f~~L~~~ 198 (402)
T PF02487_consen 140 YGK----SSLSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLLSYFFLLPSP 198 (402)
T ss_pred cCc----cccccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 543 356778888888888877654333 4477777777777666655554 5543
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG0254|consensus | Back alignment and domain information |
|---|
Probab=98.78 E-value=9.3e-08 Score=98.04 Aligned_cols=139 Identities=16% Similarity=0.148 Sum_probs=117.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhcccchh
Q psy15227 291 DQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLP 370 (515)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 370 (515)
+++.+...++..++.++.|+++|++|||+.+..+.+...++.++... ..+.+...++-++.+++.++...+.
T Consensus 92 s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~--------a~~~~~l~~GR~l~G~g~G~~~~~~ 163 (513)
T KOG0254|consen 92 GLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIAL--------APSWYQLIVGRILTGLGVGGASVLA 163 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH--------hhhHHHHHHHHHHhccchhhhhhcc
Confidence 68889999999999999999999999999999999999999999888 5677788888888988887767777
Q ss_pred hhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhh--chhHHHHHHHHHHHHHHHHHHHHhhcc
Q psy15227 371 NILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSL--GQHVIFFIYSSVHFCSVVFNYFYLMET 439 (515)
Q Consensus 371 ~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (515)
..+.+|..|++.||...+.......+|..++ .+.+...++. +|+..+.+..+.+++..+. .++.||+
T Consensus 164 piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pes 232 (513)
T KOG0254|consen 164 PVYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPES 232 (513)
T ss_pred hhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCC
Confidence 7999999999999999999998888877777 5666665543 8997777777777777666 5666654
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.3e-06 Score=88.87 Aligned_cols=136 Identities=15% Similarity=0.155 Sum_probs=111.5
Q ss_pred cchhhHHHHHHHHHHHhhhhhhhHhhhhhh-hhhhHHHHHHHHHHHHHHHHHHhh-h--------hhHHHHHHHHhhhhh
Q psy15227 53 LNKYQLSWMVSLLDLGNAISPIFAGILVEK-IGRKTTLLLNALLCLPTWFLVVSN-K--------IECLYIARLFIGISK 122 (515)
Q Consensus 53 ~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr-~Grr~~l~~~~~l~~i~~~~~~~~-~--------~~~l~~~r~l~G~~~ 122 (515)
.++++...+...+....-+..+++|+++|+ +||++.+.++.++..+|.++.++. . ....+++-.+.++|.
T Consensus 20 ~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G~ 99 (654)
T TIGR00926 20 FSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALGT 99 (654)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhhc
Confidence 888888888888988899999999999996 999999999999999999888765 1 134667788889999
Q ss_pred hhcccchhhhhhccccccc---ccccccccchhhhHHHHHHHHHhhHH-----------HhHHHHHhhhHHHHHHHHHhh
Q psy15227 123 GVAYTAMPIFIGEISEHNI---RGALGSIPSGFQMVGTLAILLIGNHV-----------SYNSLNIALSILPVIFFILFS 188 (515)
Q Consensus 123 g~~~~~~~~~i~e~~~~~~---r~~~~~~~~~~~~lG~~~~~~l~~~l-----------~wr~~f~i~~~~~~~~~~~~~ 188 (515)
|+.-+...+...|.+++++ |.....++..+.++|.++++.+...+ +|...|.+.++..++.++...
T Consensus 100 GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~ 179 (654)
T TIGR00926 100 GGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFM 179 (654)
T ss_pred cccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999997643 56677788888899998887776554 388888888877776665543
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=98.75 E-value=9.3e-08 Score=91.01 Aligned_cols=122 Identities=11% Similarity=0.067 Sum_probs=95.9
Q ss_pred cchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHhhhhhhhcccchhh
Q psy15227 53 LNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALLCLPTWFLVVSN-KIECLYIARLFIGISKGVAYTAMPI 131 (515)
Q Consensus 53 ~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~ 131 (515)
.++.+.+...+.+..+..+|.++.+++.||+|+|+.+.++..+..++.++.... +.. ....-++.|++.+..+|...+
T Consensus 175 ~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~-~~~~~~l~g~~~s~i~P~~~s 253 (310)
T TIGR01272 175 LPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYV-AMWFVLALGLFNSIMFPTIFS 253 (310)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988888877777655554 332 233555889999999999999
Q ss_pred hhhcccccccccccccccchhhhHHHHHHHHHhhHH----HhHHHHHhhh
Q psy15227 132 FIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHV----SYNSLNIALS 177 (515)
Q Consensus 132 ~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~l----~wr~~f~i~~ 177 (515)
...+..|++ .+.+.++. ....+|..+.|.+.+.+ |.+..|++..
T Consensus 254 ~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~ 301 (310)
T TIGR01272 254 LALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPV 301 (310)
T ss_pred HHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHH
Confidence 999988765 45666665 45667888888766554 6677766433
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >KOG2504|consensus | Back alignment and domain information |
|---|
Probab=98.74 E-value=6.3e-08 Score=97.59 Aligned_cols=160 Identities=11% Similarity=0.074 Sum_probs=126.9
Q ss_pred hHHHHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCC
Q psy15227 269 ITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNF 348 (515)
Q Consensus 269 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (515)
...+..+.+.+.++.+.+..+.+++.++......+..++.+.+.||+|.|.+.+.+.++..+++++..+ ..+
T Consensus 62 ~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF--------~~~ 133 (509)
T KOG2504|consen 62 INSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSF--------ATS 133 (509)
T ss_pred hheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHH--------Hhh
Confidence 344445566667777777667888888998999999999999999999999999999999999988877 444
Q ss_pred ccH-HHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHH
Q psy15227 349 QYI-PYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFC 427 (515)
Q Consensus 349 ~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~ 427 (515)
.|. .+....+.|++.+.......+.+...| +++|+.+.|+......+|.++-|.+...+.+..||+..+++.+.+.+-
T Consensus 134 i~~l~lt~gvi~G~G~~~~~~paiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~ 212 (509)
T KOG2504|consen 134 LWQLYLTFGVIGGLGLGLIYLPAVVILGTYF-EKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLN 212 (509)
T ss_pred HHHHHHHHHHHhhccchhhhcchhhhhhhHh-HHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 443 344555667776444444446666665 567999999999999999999999999999999999999999999877
Q ss_pred HHHHHHHHhh
Q psy15227 428 SVVFNYFYLM 437 (515)
Q Consensus 428 ~~~~~~~~~~ 437 (515)
+.+......|
T Consensus 213 ~~~~~~~~rp 222 (509)
T KOG2504|consen 213 VLVAGALLRP 222 (509)
T ss_pred HHHHHHHcCC
Confidence 7777655554
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.7e-06 Score=78.25 Aligned_cols=142 Identities=15% Similarity=0.013 Sum_probs=100.8
Q ss_pred hchHHHHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCC
Q psy15227 267 GGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELP 346 (515)
Q Consensus 267 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (515)
...+.+..|.|.+.++.+++..+...+.....++..+ .+..|.+.|++|++.++.++.+...++...+.......- ..
T Consensus 16 Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i-~~ 93 (250)
T PF06813_consen 16 GTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRI-PS 93 (250)
T ss_pred CcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCcc-Cc
Confidence 3467788999999999999988888888888888776 488899999999999999999999888877765443110 01
Q ss_pred CCccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q psy15227 347 NFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKS 411 (515)
Q Consensus 347 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~ 411 (515)
.+.|......++.+.+.............+.||. +||++.|+.-....+++.+-..+...+.+.
T Consensus 94 ~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG~vvgilk~~~GLSaai~t~i~~~~f~~ 157 (250)
T PF06813_consen 94 LPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-SRGTVVGILKGFFGLSAAIFTQIYSAFFGD 157 (250)
T ss_pred cchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-ccCceehhhhHHHHhHHHHHHHHHHHHcCC
Confidence 1223332222222222222233333445577885 799999999999999999988888777655
|
|
| >KOG0637|consensus | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.3e-07 Score=90.08 Aligned_cols=137 Identities=13% Similarity=0.186 Sum_probs=101.9
Q ss_pred HhhhhhccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhh----hhhhHHHHH-HHHHHH
Q psy15227 23 LIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEK----IGRKTTLLL-NALLCL 97 (515)
Q Consensus 23 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr----~Grr~~l~~-~~~l~~ 97 (515)
|......++..|.+-. ++ ++....+.+.-+.-+...+.+++.|..+|| |||||.++. +.++..
T Consensus 46 f~wA~elsy~tPyl~~-------lG-----vphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~ 113 (498)
T KOG0637|consen 46 FGWALELSYLTPYLQS-------LG-----VPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIA 113 (498)
T ss_pred HHHHHHhccccHHHHH-------cC-----CCcccccccccccccccceecccccccccccccccccccchHHHhhHHHH
Confidence 5555566666655442 55 667777777777888888999999999995 998877666 566667
Q ss_pred HHHHHHHhh-hhh-----------------HHHHHHHHhhhhhhhcccchhhhhhcccccccccc-cccccchhhhHHHH
Q psy15227 98 PTWFLVVSN-KIE-----------------CLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGA-LGSIPSGFQMVGTL 158 (515)
Q Consensus 98 i~~~~~~~~-~~~-----------------~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~-~~~~~~~~~~lG~~ 158 (515)
++.++..++ ++. .++++--+.=++.-.....+-+++.|.+.++++.+ +++++....++|..
T Consensus 114 ~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnv 193 (498)
T KOG0637|consen 114 VSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNV 193 (498)
T ss_pred HHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcce
Confidence 777777776 533 23344444455566777888999999998877766 99999999999999
Q ss_pred HHHHHhhHHHhHH
Q psy15227 159 AILLIGNHVSYNS 171 (515)
Q Consensus 159 ~~~~l~~~l~wr~ 171 (515)
+|..++.+.+|+-
T Consensus 194 LGY~~g~y~~~~~ 206 (498)
T KOG0637|consen 194 LGYALGSYLGLYK 206 (498)
T ss_pred eeeecccccCceE
Confidence 9999998877653
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=98.63 E-value=7.3e-05 Score=74.34 Aligned_cols=114 Identities=8% Similarity=-0.047 Sum_probs=87.6
Q ss_pred chhhHHHHHHHHHHHhhhh-hhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhh--------------------------
Q psy15227 54 NKYQLSWMVSLLDLGNAIS-PIFAGILVEKIGRKTTLLLNALLCLPTWFLVVSN-------------------------- 106 (515)
Q Consensus 54 s~~~~~~~~s~~~lg~~i~-~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~-------------------------- 106 (515)
+...+.++-+...+...+. .++.+++++|++|++++-+....+....+++++.
T Consensus 41 gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~ 120 (472)
T TIGR00769 41 GAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFM 120 (472)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhH
Confidence 4467899999888877777 8999999999999999888766666655555443
Q ss_pred ------hhhHHHHHHHHhhhhhhhccc-chhhhhhcccccccccccccccchhhhHHHHHHHHHhhHH
Q psy15227 107 ------KIECLYIARLFIGISKGVAYT-AMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHV 167 (515)
Q Consensus 107 ------~~~~l~~~r~l~G~~~g~~~~-~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~l 167 (515)
+.|...+.-+...+-...... .-..+..|.++.+|-.|..++...+.++|.++++.+..++
T Consensus 121 ~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~ 188 (472)
T TIGR00769 121 GFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYF 188 (472)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123333444455555555554 6678899999999999999999999999999999888765
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.1e-06 Score=85.02 Aligned_cols=140 Identities=12% Similarity=0.170 Sum_probs=118.8
Q ss_pred cchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHhhhhhhhcccchhh
Q psy15227 53 LNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALLCLPTWFLVVSN-KIECLYIARLFIGISKGVAYTAMPI 131 (515)
Q Consensus 53 ~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~ 131 (515)
.++...|.+.+...+.-++...+..++.+|+|.|+.++++..+..+=.++++++ +.+.+.+.+.+.|+-.+....+...
T Consensus 256 ~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fk 335 (412)
T PF01306_consen 256 QGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFK 335 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred hhhcccccccccccccc-cchhhhHHHHHHHHHhhHH----HhHHHHHhhhHHHHHHHHHhhc-ccC
Q psy15227 132 FIGEISEHNIRGALGSI-PSGFQMVGTLAILLIGNHV----SYNSLNIALSILPVIFFILFSF-VPE 192 (515)
Q Consensus 132 ~i~e~~~~~~r~~~~~~-~~~~~~lG~~~~~~l~~~l----~wr~~f~i~~~~~~~~~~~~~~-~pe 192 (515)
|+++.+|+|..++...+ .+.+.++|..+.+.+++.+ |.+..|++.+.+.+...+...+ +++
T Consensus 336 YI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~ 402 (412)
T PF01306_consen 336 YITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKK 402 (412)
T ss_dssp HHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred HHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecC
Confidence 99999999877776666 4677888888777777665 8899999988887766666554 544
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >KOG0253|consensus | Back alignment and domain information |
|---|
Probab=98.58 E-value=7.4e-07 Score=82.48 Aligned_cols=148 Identities=12% Similarity=0.107 Sum_probs=115.9
Q ss_pred cccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHH
Q psy15227 281 PKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYA 360 (515)
Q Consensus 281 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 360 (515)
...|.+..+..++......+..+++...|.+.|++|||+..........+.-.+-+. +.+....++.-.+.+
T Consensus 106 ~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~--------spnf~~L~~f~~l~~ 177 (528)
T KOG0253|consen 106 EVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGA--------SPNFASLCVFRALWG 177 (528)
T ss_pred hhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcC--------CCCeehhhHHHHHHh
Confidence 334677678888888888999999999999999999999887777766665555444 555666667777777
Q ss_pred HHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHhhcc
Q psy15227 361 ASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFNYFYLMET 439 (515)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (515)
++.++ .|...++-.|..|..+|..-+-+. ....+|......+.-....+.||++.+........+.+.++ ++.+|.
T Consensus 178 ~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~a~f~-~w~~ES 253 (528)
T KOG0253|consen 178 FGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFAARFL-VWVYES 253 (528)
T ss_pred ccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHH-hhcccC
Confidence 77766 788888999999999998877766 88889999998888888889999987777776666655554 566664
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=3.7e-07 Score=86.80 Aligned_cols=150 Identities=21% Similarity=0.281 Sum_probs=117.0
Q ss_pred hhhhccchhhhhhcccCCCCcccccccccch--hhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHH
Q psy15227 25 AGCWIAWPSVMIKRLTDENPDLENIGIRLNK--YQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALLCLPTWFL 102 (515)
Q Consensus 25 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~--~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~ 102 (515)
...+........+.+..+ ++ .+. .+.++..+.+.++..++.++.|.++||+|||+.+..+.....++.+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~---~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~ 85 (338)
T COG0477 14 LGLDLGLLSPALPLLLST---LS-----LSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLL 85 (338)
T ss_pred HHHhcchHHHHHHHHHHH---cC-----CCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHH
Confidence 335555555565555432 33 333 47899999999999999999999999999998888888776677777
Q ss_pred HHhh-h--hhHHHHHHHHhhhhhhhcccchhhhhhccccc-ccccccccccch-hhhHHHHHHHHHhhHH------HhHH
Q psy15227 103 VVSN-K--IECLYIARLFIGISKGVAYTAMPIFIGEISEH-NIRGALGSIPSG-FQMVGTLAILLIGNHV------SYNS 171 (515)
Q Consensus 103 ~~~~-~--~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~-~~r~~~~~~~~~-~~~lG~~~~~~l~~~l------~wr~ 171 (515)
+.+. + .+.+++.|+++|++.+...+...+++.|+.|+ ++|+...+.... ...+|..+++.++..+ +||.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (338)
T COG0477 86 LALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRA 165 (338)
T ss_pred HHhCccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 7777 6 89999999999999999999999999999997 678888888887 5777888887666544 6888
Q ss_pred HHHhhhHHHHH
Q psy15227 172 LNIALSILPVI 182 (515)
Q Consensus 172 ~f~i~~~~~~~ 182 (515)
.|.........
T Consensus 166 ~~~~~~~~~~~ 176 (338)
T COG0477 166 AFLLAALLGLL 176 (338)
T ss_pred HHHHHHHHHHH
Confidence 66655555543
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.7e-06 Score=87.98 Aligned_cols=114 Identities=11% Similarity=0.123 Sum_probs=89.2
Q ss_pred chhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHh-----h-hhhHHHHHHHHhhhhhhhccc
Q psy15227 54 NKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALLCLPTWFLVVS-----N-KIECLYIARLFIGISKGVAYT 127 (515)
Q Consensus 54 s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~~~-----~-~~~~l~~~r~l~G~~~g~~~~ 127 (515)
++...+++.+...++..++.+++++++||+|+|+.+.++..+..++.+.... . +.+.+++.-++.|++.+...+
T Consensus 264 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~ 343 (473)
T PRK10429 264 DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWV 343 (473)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777777899999999999999999999999888777766655432 2 667777788889999999999
Q ss_pred chhhhhhccccc-------ccccccccccchhhhHHHHHHHHHhhHH
Q psy15227 128 AMPIFIGEISEH-------NIRGALGSIPSGFQMVGTLAILLIGNHV 167 (515)
Q Consensus 128 ~~~~~i~e~~~~-------~~r~~~~~~~~~~~~lG~~~~~~l~~~l 167 (515)
...++++|..+. ++.|...+......-+|..+++.+.+.+
T Consensus 344 ~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~ 390 (473)
T PRK10429 344 LQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVV 390 (473)
T ss_pred HHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999663 2234577888888778888877766543
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.3e-06 Score=84.13 Aligned_cols=140 Identities=17% Similarity=0.280 Sum_probs=110.9
Q ss_pred cchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhh--hhhHHHH----HHHHhhhhhhhcc
Q psy15227 53 LNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALLCLPTWFLVVSN--KIECLYI----ARLFIGISKGVAY 126 (515)
Q Consensus 53 ~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~--~~~~l~~----~r~l~G~~~g~~~ 126 (515)
.+....+.+.+...++-++.-...+++..|+|.|+++.++.+.+++=..+.+.. +.+...+ ...+.|+..+..+
T Consensus 240 ~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~ 319 (400)
T PF03825_consen 240 YSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFH 319 (400)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHH
Confidence 345567778888888888999999999999999999999999999988887776 4444333 3456999999999
Q ss_pred cchhhhhhcccccccccccccccch-hhhHHHHHHHHHhhHH----------HhHHHHHhhhHHHHHHHHHhh-cccC
Q psy15227 127 TAMPIFIGEISEHNIRGALGSIPSG-FQMVGTLAILLIGNHV----------SYNSLNIALSILPVIFFILFS-FVPE 192 (515)
Q Consensus 127 ~~~~~~i~e~~~~~~r~~~~~~~~~-~~~lG~~~~~~l~~~l----------~wr~~f~i~~~~~~~~~~~~~-~~pe 192 (515)
.++..++.+.+|++.|+++.++++. ..++|..+|..+++++ .|...+.+.+++.++..++.. +.+|
T Consensus 320 ~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~ 397 (400)
T PF03825_consen 320 AASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKP 397 (400)
T ss_pred HHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 9999999999999999999998775 4678888888888775 355666666666666555544 3454
|
|
| >KOG3810|consensus | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.7e-06 Score=78.13 Aligned_cols=357 Identities=13% Similarity=0.101 Sum_probs=214.3
Q ss_pred cchhhHH-HHHHHHHHHhhhhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHhhhhhhhcccchh
Q psy15227 53 LNKYQLS-WMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALLCLPTWFLVVSN-KIECLYIARLFIGISKGVAYTAMP 130 (515)
Q Consensus 53 ~s~~~~~-~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~ 130 (515)
++..|+. -+.-...-.+.+.-.+.=.+.|-.-.|++++.-.+.......+..+. +.+.+-+.-+..|...+.. .+-+
T Consensus 38 lT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tAaE-IAYy 116 (433)
T KOG3810|consen 38 LTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATAAE-IAYY 116 (433)
T ss_pred ccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHHHH-Hhhh
Confidence 6666553 23334444556666677778999999999999888888888888888 9999999999999987754 7778
Q ss_pred hhhhcccccccccccccccchhhhHHHHHHHHHhhHH------HhHHHHHhhhHHHHHHHHHhhcccCcchhhhhcCChh
Q psy15227 131 IFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHV------SYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLK 204 (515)
Q Consensus 131 ~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~l------~wr~~f~i~~~~~~~~~~~~~~~pesp~~~~~~~~~~ 204 (515)
+++-+..+|+++.++.+.-....-.|...|..++..+ ++...=.+......+......++|..+|-..-+.+.+
T Consensus 117 sYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~f~~~~~ 196 (433)
T KOG3810|consen 117 SYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVKRSLYFHRLED 196 (433)
T ss_pred heeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCchhhhhhcccc
Confidence 9999999999999999998888888888888777665 3444444444444455556667777665433333222
Q ss_pred HHHHHHHhhcCCCcChHHHHHHHHHHhhhhhhchhhhhhhhccccchhHHHHHHHHHHHHHhhchHHHHHHHHhhhcccC
Q psy15227 205 KTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLD 284 (515)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 284 (515)
+.. ..+....+ .+.+..+..+ ..-..-...+.+..++|.. .-..++.....++++-...|...+-++..
T Consensus 197 ~~~--v~~~e~~~--~~~~~~~~l~--~~~~~l~~~l~~~y~np~l-----l~WSlWwAl~scg~~QV~nY~Q~LW~~~~ 265 (433)
T KOG3810|consen 197 KIS--VGDLEEMN--PQASYMSYLR--GAFVLLWRDLQECYSNPRL-----LKWSLWWALASCGYYQVTNYTQILWKEVA 265 (433)
T ss_pred cce--eccchhcC--ccchhhHHHH--HHHHHHHHHHHHHhcCchh-----hhhHHHHHHhhchhHHHHHHHHHHHHhhC
Confidence 110 00000000 0000000000 0000111233344444432 22334444455566667777776666553
Q ss_pred CCC--CCcchhHHHHHHHHHHHHHHHHHHHhhhCCch--hHHHhhHHHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHH
Q psy15227 285 NAY--FGPDQCILVFMIIMFLSNFLQAPLMDILGRKP--LSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYA 360 (515)
Q Consensus 285 ~~~--~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 360 (515)
-++ .-.|..=.+..+.++++.+..|++.-...|.. ++.++.+..+...+.+.. .++.|...+...++.
T Consensus 266 ~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~--------t~~Iw~~Ya~yvlfr 337 (433)
T KOG3810|consen 266 PNPANVYNGAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQ--------TQHIWVCYAGYVLFR 337 (433)
T ss_pred CCchhhhcCHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhc--------ccceehhhhhHHHHH
Confidence 111 12233445566777888888888866555543 333333333333333332 567888888888888
Q ss_pred HHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc-----------hhHHHHHHHHHHHHHH
Q psy15227 361 ASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLG-----------QHVIFFIYSSVHFCSV 429 (515)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~g-----------~~~~~~~~~~~~~~~~ 429 (515)
..+....++...-+++....+.-|..+|+.....-+-+.+...+. .|..| +..-|.+.+++.+++.
T Consensus 338 ~~y~l~itiA~~~iA~nL~~e~~gLvFGiNTFvAl~lQsilT~iV---vd~~g~~L~ir~Q~~~Y~~Yf~v~~~i~~~~~ 414 (433)
T KOG3810|consen 338 VIYQLTITIATFQIARNLSSELFGLVFGINTFVALILQSILTLIV---VDDRGLGLDIRTQFVVYSSYFIVLGVIFLIGF 414 (433)
T ss_pred hhHhhhhhHHHHHHHHhhhhhhheeeeehHHHHHHHHHHhheEEE---EcccccCCCcceeEEEEeehHHHHHHHHHHHH
Confidence 888666666666666666888889999988777666665554433 23222 1234666666666665
Q ss_pred HHH
Q psy15227 430 VFN 432 (515)
Q Consensus 430 ~~~ 432 (515)
.+.
T Consensus 415 ~~~ 417 (433)
T KOG3810|consen 415 GIE 417 (433)
T ss_pred HHH
Confidence 543
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.7e-09 Score=109.41 Aligned_cols=141 Identities=19% Similarity=0.233 Sum_probs=109.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCC---CccHHHHHHHHHHHHHhcc
Q psy15227 290 PDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPN---FQYIPYITTLLYAASYYGI 366 (515)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~ 366 (515)
.+.......++..+|+++.|+++||+|||+.+..+..+..++.++... .+ +.+...+.-++.|++.++.
T Consensus 48 ~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~--------~~~~~~~~~~~~~R~~~G~~~g~~ 119 (451)
T PF00083_consen 48 SSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAF--------APSYNNFWMLLIGRFLIGFGIGGA 119 (451)
T ss_pred HHHHHHHHHhhhcccccccccccccccccccccccccccccccccccc--------cccccccccccccccccccccccc
Confidence 356677888999999999999999999999999999999888888777 44 5667777777888887777
Q ss_pred cchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHh---hhchhHHHHHHHHHHHHHHHHHHHHhhcc
Q psy15227 367 GCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITK---SLGQHVIFFIYSSVHFCSVVFNYFYLMET 439 (515)
Q Consensus 367 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (515)
.+....++.|..|++.|+...++......+|..++..+...+.+ ..+|+..+.+.++..++..+. ..+.||+
T Consensus 120 ~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~-~~~~pES 194 (451)
T PF00083_consen 120 YVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLL-RFFLPES 194 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccc
Confidence 88888999999999999999999998888888777766543333 234776666666555544443 3556765
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.48 E-value=7.6e-07 Score=89.29 Aligned_cols=163 Identities=18% Similarity=0.113 Sum_probs=106.8
Q ss_pred HHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHh----hhCCchh-HHHhhHHHHHHHHHHHHHHHhhCCCCCCcc
Q psy15227 276 SSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMD----ILGRKPL-SCFSAALGCLLTFSTGLFYLYQGELPNFQY 350 (515)
Q Consensus 276 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~grr~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (515)
.+.+.+..|.++...+.......+...+..++.|.++| |+|||+. ++.+.+..+++..++........+......
T Consensus 25 ~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~ 104 (428)
T PF13347_consen 25 LYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLV 104 (428)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHH
Confidence 34444556988888888888888888889999999999 7887665 445666666666665431000000001112
Q ss_pred HHHHHHHHHHHHHhcccchhhhhhcccccc-hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhh-------chhHHHHHHH
Q psy15227 351 IPYITTLLYAASYYGIGCLPNILVSELFPI-NVRCQASSCASVALAFGSFITTKFHILITKSL-------GQHVIFFIYS 422 (515)
Q Consensus 351 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~-~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~-------g~~~~~~~~~ 422 (515)
...+..+++..++........++.+|..++ ++|.+..+.......+|..+...+.+.+.+.. ++.....+.+
T Consensus 105 ~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~ 184 (428)
T PF13347_consen 105 WLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLA 184 (428)
T ss_pred HHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHH
Confidence 234445555666655555556889999874 68999999998989998877777777666543 3555666666
Q ss_pred HHHHHHHHHHHHHhhc
Q psy15227 423 SVHFCSVVFNYFYLME 438 (515)
Q Consensus 423 ~~~~~~~~~~~~~~~~ 438 (515)
++.+++.++..+..||
T Consensus 185 iv~~v~~~i~~~~~ke 200 (428)
T PF13347_consen 185 IVGLVFFLITFFFVKE 200 (428)
T ss_pred HHHHHHhhhhhheeee
Confidence 6666666655555555
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.42 E-value=8.9e-06 Score=79.70 Aligned_cols=114 Identities=18% Similarity=0.189 Sum_probs=94.0
Q ss_pred cchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHhhhhhhhcccch
Q psy15227 53 LNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALLCLPTWFLVVSN---KIECLYIARLFIGISKGVAYTAM 129 (515)
Q Consensus 53 ~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~---~~~~l~~~r~l~G~~~g~~~~~~ 129 (515)
.++.+..+.......+.+++.+++.++++|+|+|+++.++.++..++.++..+. +.+.+++..++.++|.+...+..
T Consensus 269 ~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~ 348 (467)
T COG2211 269 DPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLP 348 (467)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhcccccc
Confidence 666777788888888888889999999999999999999999999999999887 78889999999999999999999
Q ss_pred hhhhhccccccc-------ccccccccchhhhHHHHHHHHHhhH
Q psy15227 130 PIFIGEISEHNI-------RGALGSIPSGFQMVGTLAILLIGNH 166 (515)
Q Consensus 130 ~~~i~e~~~~~~-------r~~~~~~~~~~~~lG~~~~~~l~~~ 166 (515)
.++++|..+-.| -|...+.+....=+|..++..+.++
T Consensus 349 wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~ 392 (467)
T COG2211 349 WAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGW 392 (467)
T ss_pred HHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998765322 2555666666666677766655543
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=3.8e-06 Score=84.69 Aligned_cols=165 Identities=12% Similarity=0.041 Sum_probs=101.8
Q ss_pred HHHHHHhhh-cccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhh----hCCch-hHHHhhHHHHHHHHHHHHHHHhhCCC
Q psy15227 272 MITYSSTLL-PKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDI----LGRKP-LSCFSAALGCLLTFSTGLFYLYQGEL 345 (515)
Q Consensus 272 ~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~grr~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (515)
...|.+.++ +..|.++...+.+..+.-+...+..++.|+++|| +|||+ .++.+.+..+++..++..... . ..
T Consensus 28 ~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~-~-~~ 105 (444)
T PRK09669 28 VMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPD-F-GA 105 (444)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCC-C-Cc
Confidence 344444444 4469998899999999999999999999999998 56644 455555655555544332100 0 00
Q ss_pred CCCccHHHHHHHHHHHHHhcccchhhhhhcccc-cchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhh-------hchhHH
Q psy15227 346 PNFQYIPYITTLLYAASYYGIGCLPNILVSELF-PINVRCQASSCASVALAFGSFITTKFHILITKS-------LGQHVI 417 (515)
Q Consensus 346 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~-------~g~~~~ 417 (515)
....+...+...++..++........++.+|.. ++++|++..+.......+|..+++.+...+... .||...
T Consensus 106 ~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~ 185 (444)
T PRK09669 106 TGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYA 185 (444)
T ss_pred chHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHH
Confidence 011122333333445455444444557888876 457788888888888888888887765554433 345556
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q psy15227 418 FFIYSSVHFCSVVFNYFYLME 438 (515)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~ 438 (515)
+.+.++++.+..+.+++..+|
T Consensus 186 ~~i~~ii~~v~~~~~~~~~~e 206 (444)
T PRK09669 186 MMVMGLLGVVLFFCCFFMTKE 206 (444)
T ss_pred HHHHHHHHHHHHHHHhCCeEE
Confidence 666666666555554444444
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.37 E-value=7.9e-06 Score=82.63 Aligned_cols=161 Identities=16% Similarity=0.043 Sum_probs=101.1
Q ss_pred HHHHHHHHhhh-cccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhC-----CchhHHHhhHHHH-HHHHHHHHHHHhh
Q psy15227 270 TSMITYSSTLL-PKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILG-----RKPLSCFSAALGC-LLTFSTGLFYLYQ 342 (515)
Q Consensus 270 ~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g-----rr~~~~~~~~~~~-~~~~~~~~~~~~~ 342 (515)
.......+.++ ++.|.+..+.+.......+...+-.+ .|.++||++ ||+.+..+.++.. +....+..
T Consensus 42 ~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~----- 115 (468)
T TIGR00788 42 GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPG----- 115 (468)
T ss_pred HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhccc-----
Confidence 33333444444 45798877777777777777777555 999999996 5555555554442 22111111
Q ss_pred CCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhh---hHHHHHHHHHHHHHHHHHHHHHhhhchhHHHH
Q psy15227 343 GELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQAS---SCASVALAFGSFITTKFHILITKSLGQHVIFF 419 (515)
Q Consensus 343 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~---g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~ 419 (515)
..+......+...+.+++..........+..|..+ +.++... +.......+|..+++.+.|.+.+..+|+..|+
T Consensus 116 --~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~ 192 (468)
T TIGR00788 116 --KVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFL 192 (468)
T ss_pred --ccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHH
Confidence 01112222224444555555555677788999988 5454433 34444456899999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHhhccc
Q psy15227 420 IYSSVHFCSVVFNYFYLMETK 440 (515)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~ 440 (515)
+.+++.++.. +...+.+|++
T Consensus 193 ~~a~l~ll~~-~~~~~~~E~~ 212 (468)
T TIGR00788 193 ITAALLLLQL-FVSNLSKERR 212 (468)
T ss_pred HHHHHHHHHH-HHHHhccccc
Confidence 8888877763 3345566643
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >KOG2325|consensus | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.3e-06 Score=85.74 Aligned_cols=159 Identities=11% Similarity=0.076 Sum_probs=110.1
Q ss_pred hhcc--cCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCC-chhHHHhhHHHHHHHHHHHHHHHhhCCCCCCccHHHHH
Q psy15227 279 LLPK--LDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGR-KPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYIT 355 (515)
Q Consensus 279 ~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (515)
|+++ .+.+....|+......++..++++..|+...|.+. |+.++.+.+++.++.+++......+ .+..+..+++
T Consensus 60 Yl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~---~~~~y~mL~~ 136 (488)
T KOG2325|consen 60 YLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVP---NGVKYLMLVA 136 (488)
T ss_pred hhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcc---cchHHHHHHH
Confidence 3444 46566778888999999999999999999999885 7778888999999988884433321 2244555555
Q ss_pred HHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHh----hh---------chhHHHHHHH
Q psy15227 356 TLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITK----SL---------GQHVIFFIYS 422 (515)
Q Consensus 356 ~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~----~~---------g~~~~~~~~~ 422 (515)
-++.|++. +.....-.|+++..-.+.|.++++..+...-+|.++||.+...+.. .+ -+..+-++.+
T Consensus 137 R~l~Gvg~-~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~ 215 (488)
T KOG2325|consen 137 RILTGVGV-GNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMA 215 (488)
T ss_pred HHHcCcCc-ccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHH
Confidence 55555553 3334445788887677788888888887777777777766543321 10 1345677788
Q ss_pred HHHHHHHHHHHHHhhcccc
Q psy15227 423 SVHFCSVVFNYFYLMETKQ 441 (515)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~ 441 (515)
++.++..+......+|..+
T Consensus 216 i~~i~~~v~i~~~f~E~~~ 234 (488)
T KOG2325|consen 216 ILWIIYIVIILFFFKEVYR 234 (488)
T ss_pred HHHHHHHHHHHhheeeccc
Confidence 8888888777777776544
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.6e-05 Score=82.68 Aligned_cols=154 Identities=14% Similarity=0.080 Sum_probs=108.8
Q ss_pred cccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhh-hCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHH
Q psy15227 281 PKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDI-LGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLY 359 (515)
Q Consensus 281 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 359 (515)
+..|++...+...........-+..+++|+++|+ +|+++.+..+.++..++..++.+...............++++.+.
T Consensus 16 ~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLi 95 (654)
T TIGR00926 16 NFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALI 95 (654)
T ss_pred HHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHH
Confidence 3467776666667777777777888889999997 699999999988888888777652110000000112234455555
Q ss_pred HHHHhcccchhhhhhcccccch---hhhhhhhHHHHHHHHHHHHHHHHHHHHHhhh-------chhHHHHHHHHHHHHHH
Q psy15227 360 AASYYGIGCLPNILVSELFPIN---VRCQASSCASVALAFGSFITTKFHILITKSL-------GQHVIFFIYSSVHFCSV 429 (515)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~p~~---~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~-------g~~~~~~~~~~~~~~~~ 429 (515)
.+|.+++-|...+...|.++++ .+...+.+...+.++|+.+++.+.+++.+.. +|...|.+.+++++++.
T Consensus 96 a~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~ 175 (654)
T TIGR00926 96 ALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILAL 175 (654)
T ss_pred HhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHH
Confidence 5555777788888888888753 4677788889999999999999999987543 57778888888777776
Q ss_pred HHHHH
Q psy15227 430 VFNYF 434 (515)
Q Consensus 430 ~~~~~ 434 (515)
++...
T Consensus 176 lvf~~ 180 (654)
T TIGR00926 176 IVFMA 180 (654)
T ss_pred HHHHH
Confidence 66533
|
|
| >KOG2816|consensus | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.7e-05 Score=78.84 Aligned_cols=137 Identities=18% Similarity=0.199 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhcc
Q psy15227 297 FMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSE 376 (515)
Q Consensus 297 ~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 376 (515)
.++..++.+...|.++|++|||..+........+......+ .. |...+ ..-...++........+++++
T Consensus 71 ~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~--------~~--~~~~~-~~~l~g~~~~~~s~~~a~vad 139 (463)
T KOG2816|consen 71 AGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLF--------QG--YWFFL-LLGLSGGFSAIFSVGFAYVAD 139 (463)
T ss_pred hHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHH--------HH--HHHhh-hcccccchhhhhhhhhhheee
Confidence 36778889999999999999999988877776666655554 11 22222 111222225666777899999
Q ss_pred cccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHhhccccccH
Q psy15227 377 LFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFNYFYLMETKQKTL 444 (515)
Q Consensus 377 ~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (515)
....+.|....|+.+.....+..++|.+.+.+.+..|...++.+..+..++..+.....+||+..++.
T Consensus 140 is~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~ 207 (463)
T KOG2816|consen 140 ISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKE 207 (463)
T ss_pred ccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCccc
Confidence 99999999999999999999999999999999999999999999999999998888888888765543
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.1e-05 Score=73.74 Aligned_cols=155 Identities=12% Similarity=-0.032 Sum_probs=104.5
Q ss_pred hhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCCccHHHHHHH
Q psy15227 278 TLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTL 357 (515)
Q Consensus 278 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (515)
...++.|++..+.+.+.........+...+.|.+.||+|||+..+...++..++++.-- .++.+..++.-+
T Consensus 59 ~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~---------~~~~~~L~~GRv 129 (354)
T PF05631_consen 59 ALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKH---------SSNYPVLLLGRV 129 (354)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHh---------ccccHHHHHHHH
Confidence 34467899888888899888899999999999999999999988777777776665322 344556666666
Q ss_pred HHHHHHhcccchhhhh-hccc----ccchhhhhhhhHHH-HHHHHHHHHHHHHHHHHHhhhch--hHHHHHHHHHHHHHH
Q psy15227 358 LYAASYYGIGCLPNIL-VSEL----FPINVRCQASSCAS-VALAFGSFITTKFHILITKSLGQ--HVIFFIYSSVHFCSV 429 (515)
Q Consensus 358 l~~~~~~~~~~~~~~~-~~~~----~p~~~r~~~~g~~~-~~~~lg~~~~~~~~g~l~~~~g~--~~~~~~~~~~~~~~~ 429 (515)
+.|+......+..-++ +.|. +|++..+...+... ..+.+-.+.+..+...+.+..+. ..+|.....+..++.
T Consensus 130 lgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~ 209 (354)
T PF05631_consen 130 LGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAA 209 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHH
Confidence 6666664444444333 3333 45555555555555 33445556666666666776654 678888888888777
Q ss_pred HHHHHHhhcccc
Q psy15227 430 VFNYFYLMETKQ 441 (515)
Q Consensus 430 ~~~~~~~~~~~~ 441 (515)
+++....+|..+
T Consensus 210 ~~I~~~W~ENyg 221 (354)
T PF05631_consen 210 VLILKTWPENYG 221 (354)
T ss_pred HHHHhcccccCC
Confidence 776555556544
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.6e-05 Score=80.23 Aligned_cols=164 Identities=16% Similarity=0.061 Sum_probs=103.9
Q ss_pred HHHHHHHhhhcc-cCCCCCCcchhHHHHHHHHHHHHHHHHHHHhh----hCCchh-HHHhhHHHHHHHHHHHHHHHhhCC
Q psy15227 271 SMITYSSTLLPK-LDNAYFGPDQCILVFMIIMFLSNFLQAPLMDI----LGRKPL-SCFSAALGCLLTFSTGLFYLYQGE 344 (515)
Q Consensus 271 ~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~grr~~-~~~~~~~~~~~~~~~~~~~~~~~~ 344 (515)
....|+..++.+ .|.++...+.+..+.-+...+.-++.|+++|| +|||+. ++.+.+..+++..++... ++
T Consensus 27 ~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~---p~- 102 (460)
T PRK11462 27 NVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYST---PD- 102 (460)
T ss_pred HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhC---CC-
Confidence 334444444444 69888888888888899999999999999997 576654 445556666655443321 11
Q ss_pred CCCC--ccHHHHHHHHHHHHHhcccchhhhhhccccc-chhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhh-------ch
Q psy15227 345 LPNF--QYIPYITTLLYAASYYGIGCLPNILVSELFP-INVRCQASSCASVALAFGSFITTKFHILITKSL-------GQ 414 (515)
Q Consensus 345 ~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p-~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~-------g~ 414 (515)
.+.. .....+..+++..++........++.+|+.+ +++|++..+.......+|..+++.+...+.+.. ||
T Consensus 103 ~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~ 182 (460)
T PRK11462 103 LSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGF 182 (460)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhH
Confidence 0111 1223334445555665555555678888876 678999999999999998888877766655443 34
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhc
Q psy15227 415 HVIFFIYSSVHFCSVVFNYFYLME 438 (515)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~ 438 (515)
.....+++++.+++..+++...+|
T Consensus 183 ~~~~~i~~ii~~i~~~i~~~~~kE 206 (460)
T PRK11462 183 QGGIAVLSVVAFMMLAFCFFTTKE 206 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHhccee
Confidence 445555555555555444333344
|
|
| >KOG4662|consensus | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.2e-06 Score=65.89 Aligned_cols=55 Identities=45% Similarity=1.010 Sum_probs=50.3
Q ss_pred cccccccccccccccCCCCCCcccchHHHHHHHHHHHHHHHHHHhHhcchhhhhh
Q psy15227 456 KQLRREKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSPLIKQK 510 (515)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (515)
..-.+||.+|+|||.+|..+.|.+|+.++|+.++.|++||+|+.+.+|-|+..++
T Consensus 34 ~~~~~EKsspYECGFdP~~~arlpFsirfflvaI~FliFDLEi~~~lp~~l~~d~ 88 (122)
T KOG4662|consen 34 SSVGKEKSSPYECGFDPLGDARLPFSIRFFLVAITFLIFDLEIVLLLPGALPQDM 88 (122)
T ss_pred cccChhcCCccccCCCcCccccCchhhHHHHHHHHHHHHhhHHHhhCccccchhh
Confidence 3445789999999999999999999999999999999999999999999987664
|
|
| >KOG3574|consensus | Back alignment and domain information |
|---|
Probab=98.27 E-value=4.4e-05 Score=71.21 Aligned_cols=357 Identities=11% Similarity=-0.029 Sum_probs=182.2
Q ss_pred HHHHHHHHHhhhhhccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhh-----hhhhhHHH
Q psy15227 15 TNTASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVE-----KIGRKTTL 89 (515)
Q Consensus 15 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~D-----r~Grr~~l 89 (515)
+..+.+.....|.-.+... .+|.+.+. -| .|-++.+...-++ .. ..--++|.++.| |+||||.-
T Consensus 33 illLl~LYllQGiP~GL~~-~iP~lL~a---k~-----vSyt~~a~fS~ay-~P-~sLKllWaPiVDs~y~k~~GrrksW 101 (510)
T KOG3574|consen 33 ILLLLFLYLLQGIPLGLIG-AIPLLLQA---KG-----VSYTSQAIFSFAY-WP-FSLKLLWAPIVDSVYSKRFGRRKSW 101 (510)
T ss_pred HHHHHHHHHHcCCchhHhh-hhHHHhcC---CC-----cchhhhhhhhhhh-hH-HHHHHHHHhhhHHHHHHhhccccce
Confidence 3344444566788888887 88877652 23 5555554432211 11 123478899999 99999865
Q ss_pred HH-HHHHHHHHHHHHHhh-h-----------hhHHHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhhhHH
Q psy15227 90 LL-NALLCLPTWFLVVSN-K-----------IECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVG 156 (515)
Q Consensus 90 ~~-~~~l~~i~~~~~~~~-~-----------~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG 156 (515)
++ +..+.+......+.. + ...+...-++.-+.++.--.+.-.+.-.+..+++-|-+......+...|
T Consensus 102 vvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~G 181 (510)
T KOG3574|consen 102 VVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAG 181 (510)
T ss_pred eeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhh
Confidence 44 333333333333222 1 2223334566667777777777788788888898888888888888888
Q ss_pred HHHHHHHhhHH-----------HhH---------HHHHhhhHHHHHHHHHhhcccCcchhhhhcCChhHHHHHHHhhcCC
Q psy15227 157 TLAILLIGNHV-----------SYN---------SLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRGN 216 (515)
Q Consensus 157 ~~~~~~l~~~l-----------~wr---------~~f~i~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~ 216 (515)
.+++..+--.+ +|. .-.+..+.+.++.-.+..+..+.+.. +
T Consensus 182 yfL~~~ifLaL~s~dF~N~y~rs~P~~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke~~~--------~----------- 242 (510)
T KOG3574|consen 182 YFLGNVVFLALESPDFCNTYLRSIPLDQGFITLAGYLWFWGALFIVATTLVALLKKENDE--------S----------- 242 (510)
T ss_pred HHhhcceeeEecChhhhhHHHhcCcCccceEEhhHHHHHHHHHHHHHHHHHHHhcCCCch--------h-----------
Confidence 88876553211 222 11223333444444444333322110 0
Q ss_pred CcChHHHHHHHHHHhhhhhhchhhhhhhhccccchhHHHHHHHHHHHHHhhchHHHHHHHHhhhcccCCCCCCcchhHHH
Q psy15227 217 KKDVMEEMNSIMDKTQEDLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILV 296 (515)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 296 (515)
..+ | ++........-++++++-|..+....+....-.. ...-....+.-+.+.|.+..+-+.....
T Consensus 243 ---~~~---e---~~~~i~~~yk~l~~vLklk~v~~la~i~lt~K~g-----f~a~da~t~LkLle~Gv~ke~Lal~~v~ 308 (510)
T KOG3574|consen 243 ---VDE---E---LELGIHESYKLLRDVLKLKSVRWLAGILLTGKLG-----FQAADALTSLKLLEHGVPKEELALIAVP 308 (510)
T ss_pred ---hhh---h---hhcCHHHHHHHHHHHHcCccHHHHHHHHHHHHHH-----hhhhhhccchHHHHcCCChhHheeeeee
Confidence 000 0 0000011122345566655444322222222121 2223333445566778887776666655
Q ss_pred HHHHHHHHHHHHHHHHhhhCCchhHH----HhhHHHHHHHHHHHHHHHhhCCCCCCc---cHHHHH-HHHHHHHHhcccc
Q psy15227 297 FMIIMFLSNFLQAPLMDILGRKPLSC----FSAALGCLLTFSTGLFYLYQGELPNFQ---YIPYIT-TLLYAASYYGIGC 368 (515)
Q Consensus 297 ~~~~~~~~~~~~g~l~d~~grr~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~l~~~~~~~~~~ 368 (515)
..-.+++.....|.++.+..+-.... .-.....+...+........+....-. ....+. ..+........+.
T Consensus 309 ~~plqI~l~~~~gk~ta~~~pl~~~lka~~~R~~~~~~~t~Lv~~~~~~~~~~G~~~~~~~il~i~~y~~~~~~~ts~fv 388 (510)
T KOG3574|consen 309 LVPLQIALPLYIGKWTAGPRPLNVFLKAVPYRLGGGLVQTALVWWTPTLGHSDGTFPRGYYILLITSYAFHQVFVTSMFV 388 (510)
T ss_pred hhhHHHhhhhhheeecCCCCcchHHHHhhhHHHHHHHHHHHHHhhhcccccCCCceeechHHHHHHHHHHhhhHHHHHHH
Confidence 54555555555555443221111111 111111122222111111111001111 111111 1122222233334
Q ss_pred hhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhchh
Q psy15227 369 LPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQH 415 (515)
Q Consensus 369 ~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~ 415 (515)
...+..+++.+|...|+.+.+.|+..++|+---..+..++.|..+++
T Consensus 389 ~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D~ltv~ 435 (510)
T KOG3574|consen 389 SGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLADGLTVK 435 (510)
T ss_pred HHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcccCcee
Confidence 44578889999999999999999999999988888888888876654
|
|
| >PRK06432 NADH dehydrogenase subunit A; Validated | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.9e-06 Score=67.21 Aligned_cols=49 Identities=20% Similarity=0.403 Sum_probs=45.1
Q ss_pred ccccccccccccccCCCCCCcccchHHHHHHHHHHHHHHHHHHhHhcch
Q psy15227 457 QLRREKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSP 505 (515)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (515)
..+++|.+++|||.+|.++.|.+|+.+||+.+.+|++||+|+.+.+|-.
T Consensus 58 ~~~~~k~spYECGFdp~g~~r~~FSirFfLIAILFLIFDVEIvlLfPwa 106 (144)
T PRK06432 58 GSDQSYLEPYESGEVAREIWGGPSINQYYIVVLLFVVFDVDMLLLFPWA 106 (144)
T ss_pred CCCcCCCcCccCCCCCCCCccCccceehHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788999999999999999999999999999999999999999964
|
|
| >MTH00113 ND3 NADH dehydrogenase subunit 3; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=7.7e-06 Score=64.22 Aligned_cols=48 Identities=50% Similarity=1.140 Sum_probs=45.0
Q ss_pred ccccccccccccCCCCCCcccchHHHHHHHHHHHHHHHHHHhHhcchh
Q psy15227 459 RREKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSPL 506 (515)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (515)
+.+|.+|+|||.+|.++.|.+++.|||+.+.+|++||+|+.+.+|.|.
T Consensus 30 ~~~k~s~yECGf~~~~~~~~~fsi~FfliailFliFDvEi~~l~P~~~ 77 (114)
T MTH00113 30 DNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPW 77 (114)
T ss_pred CcccCCeecCCcCCCccccccCCchHHHHHHHHHHHHHHHHHHhhHhh
Confidence 567889999999999999999999999999999999999999999764
|
|
| >KOG4686|consensus | Back alignment and domain information |
|---|
Probab=98.20 E-value=6.6e-06 Score=73.51 Aligned_cols=140 Identities=12% Similarity=0.114 Sum_probs=104.9
Q ss_pred cccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHHHHH-HHHHHHHHHHHHhhhhhHHHHHHHHhhhhhh
Q psy15227 45 DLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLN-ALLCLPTWFLVVSNKIECLYIARLFIGISKG 123 (515)
Q Consensus 45 ~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~~~-~~l~~i~~~~~~~~~~~~l~~~r~l~G~~~g 123 (515)
.++ +|+...+.+.+.-..-.++.+++.|.++||+|++...+.+ ++...++-....++ ++.=..+..+.|+..+
T Consensus 294 rfG-----lS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft-~lsPy~~m~~lGLsys 367 (459)
T KOG4686|consen 294 RFG-----LSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFT-FLSPYTSMTFLGLSYS 367 (459)
T ss_pred hhC-----CChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhh-hccHHHHHHHHhhhHH
Confidence 477 9999999999999999999999999999999999877765 44455554444444 3333456678888887
Q ss_pred hcccchhhhhhcccccccccccccccchhhhHHHHHHHHHhhHH-------HhHHHHH-hhhHHHHHHHHHhhcc
Q psy15227 124 VAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHV-------SYNSLNI-ALSILPVIFFILFSFV 190 (515)
Q Consensus 124 ~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~l-------~wr~~f~-i~~~~~~~~~~~~~~~ 190 (515)
.........++-..|+++-|.+.+..+...++|..+.+++++.+ .|--.|. +.+.+++....+.+.+
T Consensus 368 llAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~~ 442 (459)
T KOG4686|consen 368 LLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFYL 442 (459)
T ss_pred HHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhhe
Confidence 77666778888889999999999999999999999999998776 3444443 4444444444444333
|
|
| >MTH00069 ND3 NADH dehydrogenase subunit 3; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=9.7e-06 Score=63.53 Aligned_cols=47 Identities=51% Similarity=1.191 Sum_probs=44.0
Q ss_pred ccccccccccccCCCCCCcccchHHHHHHHHHHHHHHHHHHhHhcch
Q psy15227 459 RREKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSP 505 (515)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (515)
+++|.+|+|||.+|.++.|.+++.+||+.+.+|++||+|+.+.+|-|
T Consensus 29 ~~~K~s~yECGf~p~~~~~~~fs~~FfliallFliFDvEi~~l~P~~ 75 (114)
T MTH00069 29 DSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPTP 75 (114)
T ss_pred CcCcCCcCCCCcCCCCCccCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999954
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00011 Score=71.40 Aligned_cols=140 Identities=11% Similarity=0.033 Sum_probs=78.4
Q ss_pred HHHHHHHhhhhhccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhh-----hhhhhHHHHH
Q psy15227 17 TASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVE-----KIGRKTTLLL 91 (515)
Q Consensus 17 ~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~D-----r~Grr~~l~~ 91 (515)
++.+.+++.|.-.+.....+|.+.++. .-+ .|-+|.+...-+ ...+- .-++|.++.| |+||||.-++
T Consensus 4 lL~~LY~lQGiP~GL~~gsiPflL~~~-~~~-----~sy~q~~~fSla-~~PfS-lKlLWaPiVDs~y~~~~GRRKSWii 75 (544)
T PF13000_consen 4 LLVLLYFLQGIPLGLAFGSIPFLLQSM-AKK-----VSYSQQAIFSLA-SYPFS-LKLLWAPIVDSVYSKRIGRRKSWII 75 (544)
T ss_pred HHHHHHHHcCcccccccccchhhhccc-cCC-----CChhHheeeeee-echhH-HHHhhhhhhhhhcccccCCcchhhh
Confidence 344556778888888777778775530 012 555565542111 11111 2255666665 7999987654
Q ss_pred ------HHHHHHHHHHH----------HHhh----------hhhHHHHHHHHhhhhhhhcccchhhhhhccccccccccc
Q psy15227 92 ------NALLCLPTWFL----------VVSN----------KIECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGAL 145 (515)
Q Consensus 92 ------~~~l~~i~~~~----------~~~~----------~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~ 145 (515)
|..+..++.-. -... +...+...-++.=+-++.--.+.-.+.-.+..+++++.+
T Consensus 76 P~Q~l~g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~A 155 (544)
T PF13000_consen 76 PIQYLSGILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYA 155 (544)
T ss_pred HHHHHHHHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchH
Confidence 23233333222 0000 011223333344444455555666666677788889999
Q ss_pred ccccchhhhHHHHHHHHHh
Q psy15227 146 GSIPSGFQMVGTLAILLIG 164 (515)
Q Consensus 146 ~~~~~~~~~lG~~~~~~l~ 164 (515)
......+.+.|.+++..+-
T Consensus 156 STcqtvG~~~Gyfls~tvF 174 (544)
T PF13000_consen 156 STCQTVGQTAGYFLSFTVF 174 (544)
T ss_pred HHHHHhHhhhhHHHHHHHH
Confidence 9988888888888876554
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >CHL00022 ndhC NADH dehydrogenase subunit 3 | Back alignment and domain information |
|---|
Probab=98.17 E-value=8.8e-06 Score=64.29 Aligned_cols=46 Identities=28% Similarity=0.793 Sum_probs=43.2
Q ss_pred ccccccccccccCCCCCCcccchHHHHHHHHHHHHHHHHHHhHhcc
Q psy15227 459 RREKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPS 504 (515)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (515)
+++|.+|+|||.+|.++.|.+++.|||+.+.+|++||+|+.+.+|-
T Consensus 37 ~~~k~s~yECGf~p~~~~~~~fsv~FfliallFliFDvEii~l~P~ 82 (120)
T CHL00022 37 GPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPW 82 (120)
T ss_pred CcccCCCcCCCCCCCCCCCCccceeHHHHHHHHHHHHHHHHHHHHH
Confidence 3678899999999999999999999999999999999999999994
|
|
| >MTH00092 ND3 NADH dehydrogenase subunit 3; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=2.4e-06 Score=66.43 Aligned_cols=48 Identities=44% Similarity=0.838 Sum_probs=44.5
Q ss_pred ccccccccccccCCCCCCcccchHHHHHHHHHHHHHHHHHHhHhcchh
Q psy15227 459 RREKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSPL 506 (515)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (515)
+++|.+|+|||.+|.++.|.+++.|||+.+.+|++||+|+.+.+|-+.
T Consensus 31 ~~~K~s~yECGf~p~~~~r~~Fsi~FfliailFliFDvEiv~l~P~~~ 78 (111)
T MTH00092 31 DLLKVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEIVMFLGLLV 78 (111)
T ss_pred CcccCCccCCCCCCCCCccCccceehHHHHHHHHHHHHHHHHHHHHHH
Confidence 367889999999999999999999999999999999999999998653
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=98.15 E-value=6.1e-06 Score=60.16 Aligned_cols=79 Identities=16% Similarity=0.098 Sum_probs=70.3
Q ss_pred hhhhccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q psy15227 25 AGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALLCLPTWFLVV 104 (515)
Q Consensus 25 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~~ 104 (515)
.|......+|.+|.+.+ |.+ +|.++.|++.+..++|+.+|++...++.++..+++.+..+.+...+..+.++
T Consensus 4 mGigRFayTplLP~M~~---~~~-----ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma 75 (85)
T PF06779_consen 4 MGIGRFAYTPLLPLMQA---DGG-----LSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMA 75 (85)
T ss_pred hhhHHHHHHhHhHHHHH---hcC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 35566678899998877 477 9999999999999999999999999999999999999999999999999999
Q ss_pred hh-hhhHH
Q psy15227 105 SN-KIECL 111 (515)
Q Consensus 105 ~~-~~~~l 111 (515)
+. +.+.+
T Consensus 76 ~~~~~~~w 83 (85)
T PF06779_consen 76 LTHSFWLW 83 (85)
T ss_pred HHhchHHH
Confidence 98 76654
|
Note that many members are hypothetical proteins. |
| >MTH00203 ND3 NADH dehydrogenase subunit 3; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.1e-05 Score=62.97 Aligned_cols=47 Identities=55% Similarity=1.148 Sum_probs=43.9
Q ss_pred ccccccccccccCCCCCCcccchHHHHHHHHHHHHHHHHHHhHhcch
Q psy15227 459 RREKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSP 505 (515)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (515)
+.+|.+|+|||.+|.++.|.+++.|||.++.+|++||+|+.+.+|-+
T Consensus 31 ~~~K~s~yECGf~~~~~~~~~fsi~FfliailFliFDvEi~~l~P~~ 77 (112)
T MTH00203 31 DGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLP 77 (112)
T ss_pred CcccCcccCCCcCCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999954
|
|
| >MTH00148 ND3 NADH dehydrogenase subunit 3; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.1e-05 Score=63.57 Aligned_cols=49 Identities=59% Similarity=1.127 Sum_probs=45.1
Q ss_pred cccccccccccccCCCCCCcccchHHHHHHHHHHHHHHHHHHhHhcchh
Q psy15227 458 LRREKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSPL 506 (515)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (515)
.+++|.+|+|||.+|.++.|.+++.+||+++.+|++||+|+.+.+|-+.
T Consensus 31 ~~~~K~s~yECGf~p~~~~~~~Fsi~FfliallFliFDvEiv~l~P~~~ 79 (117)
T MTH00148 31 SDREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQ 79 (117)
T ss_pred CCcccCccccCCcCCCCCCcCcCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468889999999999999999999999999999999999999999654
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.0005 Score=64.36 Aligned_cols=152 Identities=14% Similarity=0.082 Sum_probs=123.7
Q ss_pred HHHHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCCc
Q psy15227 270 TSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQ 349 (515)
Q Consensus 270 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (515)
....-..+.+-++.|.+...++.+.++..++..+.+++..++.+|+|.++.+..++++.+++..+=.. . ..
T Consensus 29 tsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~--------~-~~ 99 (395)
T COG2807 29 TSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSL--------G-GL 99 (395)
T ss_pred hhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhc--------c-cH
Confidence 44445566677788999899999999999999999999999999999999998888888877766444 2 34
Q ss_pred cHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhh-chhHHHHHHHHHHHHH
Q psy15227 350 YIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSL-GQHVIFFIYSSVHFCS 428 (515)
Q Consensus 350 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~-g~~~~~~~~~~~~~~~ 428 (515)
+..+....+.+.+....+......+.+.||++ -+..+|++.+...+++.+++.+...+.++. ||+....+.+..++++
T Consensus 100 ~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allA 178 (395)
T COG2807 100 PLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-VGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLA 178 (395)
T ss_pred HHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-hhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHH
Confidence 55566666666666666677778888999865 689999999999999999999999998887 7998888888888777
Q ss_pred HHH
Q psy15227 429 VVF 431 (515)
Q Consensus 429 ~~~ 431 (515)
.+.
T Consensus 179 l~~ 181 (395)
T COG2807 179 LLI 181 (395)
T ss_pred HHH
Confidence 654
|
|
| >MTH00202 ND3 NADH dehydrogenase subunit 3; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=3.9e-06 Score=65.95 Aligned_cols=49 Identities=59% Similarity=1.204 Sum_probs=45.2
Q ss_pred cccccccccccccCCCCCCcccchHHHHHHHHHHHHHHHHHHhHhcchh
Q psy15227 458 LRREKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSPL 506 (515)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (515)
.+++|.+|+|||.+|.++.|.+++.+||..+.+|++||+|+...+|-+.
T Consensus 31 ~~~~k~s~yECGf~p~~~~~~~Fsi~FfliallFliFDvEi~~l~P~~~ 79 (117)
T MTH00202 31 MDREKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPL 79 (117)
T ss_pred CCcccCcccCCCcCCCccccCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4478889999999999999999999999999999999999999999654
|
|
| >MTH00136 ND3 NADH dehydrogenase subunit 3; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.2e-05 Score=63.26 Aligned_cols=48 Identities=52% Similarity=1.150 Sum_probs=44.6
Q ss_pred ccccccccccccCCCCCCcccchHHHHHHHHHHHHHHHHHHhHhcchh
Q psy15227 459 RREKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSPL 506 (515)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (515)
+++|.+|+|||.+|.++.|.+++.|||+.+.+|++||+|+...+|-|.
T Consensus 31 ~~~K~s~yECGf~p~~~~~~~fsi~FfliallFliFDvEi~~l~P~~~ 78 (116)
T MTH00136 31 DHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPW 78 (116)
T ss_pred CcCCCccccCCCCCCCCccccCceehHHHHHHHHHHHHHHHHHhhHHH
Confidence 567889999999999999999999999999999999999999999653
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=98.10 E-value=3.8e-05 Score=64.04 Aligned_cols=108 Identities=20% Similarity=0.151 Sum_probs=89.4
Q ss_pred HHHHHHHHHHhhhhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhhhhcccchhhhhhcccc
Q psy15227 59 SWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALLCLPTWFLVVSNKIECLYIARLFIGISKGVAYTAMPIFIGEISE 138 (515)
Q Consensus 59 ~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~ 138 (515)
-.-.++.+....++.++.+.+.+++|.|+.++++.+.+.+-.......+.+.++.+-.+.|++.+..+++.-.++.+..+
T Consensus 40 ~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~ 119 (156)
T PF05978_consen 40 YYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFYPNSYTLYPASALLGFGAALLWTAQGTYLTSYST 119 (156)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCC
Confidence 34455666777788888999999999999999999998865555433388899999999999999999999999999999
Q ss_pred cccccccccccchhhhHHHHHHHHHhhH
Q psy15227 139 HNIRGALGSIPSGFQMVGTLAILLIGNH 166 (515)
Q Consensus 139 ~~~r~~~~~~~~~~~~lG~~~~~~l~~~ 166 (515)
+++|++..++.-.....+.++|.++...
T Consensus 120 ~~~~~~~~~ifw~i~~~s~i~G~~~~~~ 147 (156)
T PF05978_consen 120 EETIGRNTGIFWAIFQSSLIFGNLFLFF 147 (156)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998888777777777777665443
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >MTH00042 ND3 NADH dehydrogenase subunit 3; Validated | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.5e-05 Score=62.61 Aligned_cols=49 Identities=51% Similarity=1.134 Sum_probs=45.3
Q ss_pred ccccccccccccCCCCCCcccchHHHHHHHHHHHHHHHHHHhHhcchhh
Q psy15227 459 RREKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSPLI 507 (515)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (515)
+.+|.+|+|||.+|..+.|.+++.+||..+.+|++||+|....+|-+..
T Consensus 31 ~~~k~s~yECGf~~~~~~~~~fsi~ffliallFliFDvEi~~l~P~~~~ 79 (116)
T MTH00042 31 DLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPA 79 (116)
T ss_pred CcccCccccCCCCCCCccccCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678899999999999999999999999999999999999999997653
|
|
| >PRK06602 NADH:ubiquinone oxidoreductase subunit A; Validated | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.6e-05 Score=62.97 Aligned_cols=46 Identities=39% Similarity=0.958 Sum_probs=43.6
Q ss_pred ccccccccccccCCCCCCcccchHHHHHHHHHHHHHHHHHHhHhcc
Q psy15227 459 RREKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPS 504 (515)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (515)
+++|.+|+|||.+|.++.|.+++.+||.++.+|++||+|+.+.+|-
T Consensus 38 ~~~K~s~yECGf~p~~~~~~~fsi~ffliallFliFDvEi~~l~P~ 83 (121)
T PRK06602 38 DREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFLFPW 83 (121)
T ss_pred CCCCCcccCCCcCCCcccccCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 5788899999999999999999999999999999999999999994
|
|
| >MTH00055 ND3 NADH dehydrogenase subunit 3; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.9e-05 Score=62.30 Aligned_cols=47 Identities=49% Similarity=1.034 Sum_probs=43.9
Q ss_pred ccccccccccccCCCCCCcccchHHHHHHHHHHHHHHHHHHhHhcch
Q psy15227 459 RREKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSP 505 (515)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (515)
+.+|.+|+|||.+|.++.|.+++.|||..+.+|++||+|+.+.+|-.
T Consensus 35 ~~~k~s~yECGf~p~~~~~~~Fsi~FfliallFliFDvEivll~P~a 81 (118)
T MTH00055 35 DSEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLFPWC 81 (118)
T ss_pred CcccCCccccCcCCCccccCCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788999999999999999999999999999999999999999954
|
|
| >MTH00030 ND3 NADH dehydrogenase subunit 3; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=2.2e-05 Score=61.78 Aligned_cols=48 Identities=44% Similarity=0.951 Sum_probs=44.5
Q ss_pred cccccccccccccCCCCCCcccchHHHHHHHHHHHHHHHHHHhHhcch
Q psy15227 458 LRREKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSP 505 (515)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (515)
.+.+|.+++|||.+|..+.|.+++.+||.++.+|++||+|+.+.+|-+
T Consensus 39 ~~~~k~spyECGf~p~~~~~~~Fsi~FfliallFliFDlEivll~P~a 86 (123)
T MTH00030 39 PDSEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFLFPWS 86 (123)
T ss_pred CCcccCccccCCCCCCCCccCccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788999999999999999999999999999999999999999954
|
|
| >PRK07756 NADH dehydrogenase subunit A; Validated | Back alignment and domain information |
|---|
Probab=98.07 E-value=2.3e-05 Score=62.19 Aligned_cols=46 Identities=28% Similarity=0.749 Sum_probs=43.3
Q ss_pred ccccccccccccCCCCCCcccchHHHHHHHHHHHHHHHHHHhHhcc
Q psy15227 459 RREKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPS 504 (515)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (515)
+.+|.+|+|||.+|.++.|.+++.+||..+.+|++||+|..+.+|-
T Consensus 39 ~~~K~~~yECGf~p~~~~~~~fsi~fyliallFliFDvEiv~l~P~ 84 (122)
T PRK07756 39 SAAKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLYPW 84 (122)
T ss_pred CcccCCCcCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678899999999999999999999999999999999999999994
|
|
| >MTH00012 ND3 NADH dehydrogenase subunit 3; Validated | Back alignment and domain information |
|---|
Probab=98.06 E-value=6.1e-06 Score=65.00 Aligned_cols=48 Identities=63% Similarity=1.194 Sum_probs=44.4
Q ss_pred ccccccccccccCCCCCCcccchHHHHHHHHHHHHHHHHHHhHhcchh
Q psy15227 459 RREKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSPL 506 (515)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (515)
+++|.+|+|||.+|.++.|.+++.+||.++.+|++||+|+...+|-+.
T Consensus 32 ~~~k~spyECGf~p~~~~~~~fsi~FfliallFliFDvEi~~l~P~~~ 79 (117)
T MTH00012 32 DREKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPT 79 (117)
T ss_pred CcccCcccCCCcCCCcccCCCCChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999999999999999999999643
|
|
| >PRK07928 NADH dehydrogenase subunit A; Validated | Back alignment and domain information |
|---|
Probab=98.03 E-value=2e-05 Score=62.09 Aligned_cols=48 Identities=31% Similarity=0.852 Sum_probs=42.6
Q ss_pred cccccccccccccCCCCCC--cccchHHHHHHHHHHHHHHHHHHhHhcch
Q psy15227 458 LRREKTSPFECGFDPISKP--RISYSLHFFSIALIFLIFDIEITLIFPSP 505 (515)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (515)
.+++|.+|+|||.+|.++. |.+++.|||.++.+|++||+|+...+|-.
T Consensus 33 ~~~~K~s~yECGf~p~~~~~~~~~Fsi~ffliallFliFDvEi~~l~Pwa 82 (119)
T PRK07928 33 YNRAKLEAYECGIEPTPQPAGGGRFPVKYYLTAMLFIVFDIEIVFLYPWA 82 (119)
T ss_pred CCcccCCccCCCCCCCCCccccceeeeehHHHHHHHHHHHHHHHHHHHHH
Confidence 3578889999999997774 77899999999999999999999999953
|
|
| >MTH00018 ND3 NADH dehydrogenase subunit 3; Validated | Back alignment and domain information |
|---|
Probab=98.02 E-value=2.6e-05 Score=61.08 Aligned_cols=46 Identities=52% Similarity=1.085 Sum_probs=43.2
Q ss_pred ccccccccccccCCCCCCcccchHHHHHHHHHHHHHHHHHHhHhcc
Q psy15227 459 RREKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPS 504 (515)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (515)
+.+|.+|+|||.+|..+.|.+++.|||..+.+|++||+|....+|-
T Consensus 30 ~~~k~s~yECGf~~~~~~~~~fsi~ffliailFliFDlEi~~l~P~ 75 (113)
T MTH00018 30 DREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFLFPW 75 (113)
T ss_pred CcccCcccccCcCCCcccccCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 3677899999999999999999999999999999999999999995
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00011 Score=70.09 Aligned_cols=135 Identities=14% Similarity=0.232 Sum_probs=113.1
Q ss_pred cchhhHHHHHHHHHHHhhhhhhhHhhhhh-hhhhhHHHHHHHHHHHHHHHHHHhh----hhhHHHHHHHHhhhhhhhccc
Q psy15227 53 LNKYQLSWMVSLLDLGNAISPIFAGILVE-KIGRKTTLLLNALLCLPTWFLVVSN----KIECLYIARLFIGISKGVAYT 127 (515)
Q Consensus 53 ~s~~~~~~~~s~~~lg~~i~~~~~G~l~D-r~Grr~~l~~~~~l~~i~~~~~~~~----~~~~l~~~r~l~G~~~g~~~~ 127 (515)
++..|..-+++.+..|..++....|++.. |.++|+.-.+++....++..+..++ +.+.+...-++.|++.|....
T Consensus 241 msv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~f~v 320 (403)
T PF03209_consen 241 MSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNGLFTV 320 (403)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhHHHH
Confidence 99999999999999999999999999988 6888888888888887777766555 788999999999999999999
Q ss_pred chhhhhhcccccccccccccccchhhhHHHHHHHHHhhHH--------------HhHHHHHhhhHHHHHHHHHh
Q psy15227 128 AMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHV--------------SYNSLNIALSILPVIFFILF 187 (515)
Q Consensus 128 ~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~l--------------~wr~~f~i~~~~~~~~~~~~ 187 (515)
...+..-+..++++.|..+|.+.....++..++..+++.. +|-..|.+.++..++.+.+.
T Consensus 321 gals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll 394 (403)
T PF03209_consen 321 GALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLL 394 (403)
T ss_pred HHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988877777766666443 46667777766666655554
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >MTH00106 ND3 NADH dehydrogenase subunit 3; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=7.3e-06 Score=64.40 Aligned_cols=48 Identities=50% Similarity=1.113 Sum_probs=44.4
Q ss_pred ccccccccccccCCCCCCcccchHHHHHHHHHHHHHHHHHHhHhcchh
Q psy15227 459 RREKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSPL 506 (515)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (515)
+++|.+|+|||.+|.++.|.+++.|||..+.+|++||+|+...+|-|.
T Consensus 30 ~~~k~s~yECGf~~~~~~~~~fs~~FfliallFliFDvEiv~l~P~~~ 77 (115)
T MTH00106 30 YSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPW 77 (115)
T ss_pred CcCCCCccCCCCCCCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367889999999999999999999999999999999999999999653
|
|
| >MTH00161 ND3 NADH dehydrogenase subunit 3; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=1.1e-05 Score=63.19 Aligned_cols=48 Identities=63% Similarity=1.167 Sum_probs=44.8
Q ss_pred ccccccccccccCCCCCCcccchHHHHHHHHHHHHHHHHHHhHhcchh
Q psy15227 459 RREKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSPL 506 (515)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (515)
+.+|.+|+|||.+|.++.|.+++.|||..+.+|++||+|..+.+|-+.
T Consensus 30 ~~~k~spyECGf~~~~~~~~~fsi~ffliallFliFDvEii~l~P~~~ 77 (113)
T MTH00161 30 DREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIF 77 (113)
T ss_pred CcccCccccCCcCCCCCcccCCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999999999999999999999764
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.027 Score=55.30 Aligned_cols=151 Identities=11% Similarity=-0.002 Sum_probs=97.4
Q ss_pred hhHHHHHHHHHHHHHHhhhhhccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHH-HhhhhhhhHhhhhhhhhhh
Q psy15227 8 YVYQIIATNTASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDL-GNAISPIFAGILVEKIGRK 86 (515)
Q Consensus 8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~l-g~~i~~~~~G~l~Dr~Grr 86 (515)
+++.+...+...+..++..++.+..-+. .+ .+--. +.++..+.++-+..-+ +..+..++.+++++++.|.
T Consensus 22 ~r~E~~kflpl~Ll~f~I~~ny~~lR~l----KD---slvv~--~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~ 92 (509)
T COG3202 22 RRYELKKFLPLALLFFCILFNYNLLRSL----KD---SLVVT--RQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTRE 92 (509)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHh----hh---heEee--cCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHH
Confidence 3445555555555555555655554333 22 22200 0345667788887777 7788899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhh-h--------------------------------hhHHHHHHHHhhhhhhhccc-chhhh
Q psy15227 87 TTLLLNALLCLPTWFLVVSN-K--------------------------------IECLYIARLFIGISKGVAYT-AMPIF 132 (515)
Q Consensus 87 ~~l~~~~~l~~i~~~~~~~~-~--------------------------------~~~l~~~r~l~G~~~g~~~~-~~~~~ 132 (515)
+++-+.+..+....+++++. - .|...+.-.+.=+-.+.... .-...
T Consensus 93 ~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~f 172 (509)
T COG3202 93 KVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQF 172 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888877777777766654 1 12222222222222222222 23445
Q ss_pred hhcccccccccccccccchhhhHHHHHHHHHhhHH
Q psy15227 133 IGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHV 167 (515)
Q Consensus 133 i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~l 167 (515)
..|.++.+|-.|..++.+.+.+++..+++.+..++
T Consensus 173 aNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~ 207 (509)
T COG3202 173 ANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWL 207 (509)
T ss_pred HHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888889999999999999999999998888776
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00084 Score=66.72 Aligned_cols=111 Identities=19% Similarity=0.142 Sum_probs=65.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhCCc-hhHHHhhHHHHHHHHHHHHHHHhhCC-----CCCCccHHHHHHHHHHHHHhc
Q psy15227 292 QCILVFMIIMFLSNFLQAPLMDILGRK-PLSCFSAALGCLLTFSTGLFYLYQGE-----LPNFQYIPYITTLLYAASYYG 365 (515)
Q Consensus 292 ~~~~~~~~~~~~~~~~~g~l~d~~grr-~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~ 365 (515)
.......++..+|+.+..+.. .-++| +.+.+..+.=.+ ++.+.+.....++ .-.+.+..++..+++++..+-
T Consensus 311 i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~i-FIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy 388 (437)
T TIGR00939 311 ICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVL-FIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGY 388 (437)
T ss_pred HHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHH-HHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhH
Confidence 456667888888988665431 11222 122222222222 2222122221110 113456666777777777777
Q ss_pred ccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHH
Q psy15227 366 IGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKF 404 (515)
Q Consensus 366 ~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~ 404 (515)
..+....+..+..++++|..+..+...+-.+|-.+|+.+
T Consensus 389 ~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l 427 (437)
T TIGR00939 389 LGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVL 427 (437)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777788888898999888888888777877777654
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0005 Score=67.48 Aligned_cols=103 Identities=16% Similarity=0.115 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHHHHHhh----hh------hHHHHHHHHhhhhhhhcccchhhhhhcccccc---cccccccccchhh
Q psy15227 87 TTLLLNALLCLPTWFLVVSN----KI------ECLYIARLFIGISKGVAYTAMPIFIGEISEHN---IRGALGSIPSGFQ 153 (515)
Q Consensus 87 ~~l~~~~~l~~i~~~~~~~~----~~------~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~---~r~~~~~~~~~~~ 153 (515)
|+++++.+++.+|.++..++ +. +.++++-.+.++|.|+.-|...++++|.++++ +|.....++..+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 57788899999999885555 33 57899999999999999999999999999876 3566778899999
Q ss_pred hHHHHHHHHHhhHH----HhHHHHHhhhHHHHHHHHHhhc
Q psy15227 154 MVGTLAILLIGNHV----SYNSLNIALSILPVIFFILFSF 189 (515)
Q Consensus 154 ~lG~~~~~~l~~~l----~wr~~f~i~~~~~~~~~~~~~~ 189 (515)
++|..++..+..++ +|.+.|.+.++..++..+..+.
T Consensus 82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~ 121 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLS 121 (372)
T ss_dssp HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHh
Confidence 99999998887776 7999999888887766665443
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >KOG3762|consensus | Back alignment and domain information |
|---|
Probab=97.88 E-value=9e-06 Score=79.34 Aligned_cols=136 Identities=14% Similarity=0.145 Sum_probs=116.6
Q ss_pred cchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHhhhhhhhcccchhh
Q psy15227 53 LNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALLCLPTWFLVVSN-KIECLYIARLFIGISKGVAYTAMPI 131 (515)
Q Consensus 53 ~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~ 131 (515)
-.+...|.....-..|-++.-++.+++..|+|+-+++..++.+..+=.+..... |.|+.+...+++|+..+..+.+..+
T Consensus 403 ~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~s 482 (618)
T KOG3762|consen 403 GIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIIS 482 (618)
T ss_pred CcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHH
Confidence 566667877778888888999999999999999999999999999999888888 9999999999999999999999999
Q ss_pred hhhcccccccccccccccc-----hhhhHHHHHHHHHhhHHHhHHHHHhhhHHHHHHHHHhh
Q psy15227 132 FIGEISEHNIRGALGSIPS-----GFQMVGTLAILLIGNHVSYNSLNIALSILPVIFFILFS 188 (515)
Q Consensus 132 ~i~e~~~~~~r~~~~~~~~-----~~~~lG~~~~~~l~~~l~wr~~f~i~~~~~~~~~~~~~ 188 (515)
|++...||+-|..+.++.+ .+-++|.++|..+...++=|..|.+.++.+++.+++..
T Consensus 483 Y~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~ 544 (618)
T KOG3762|consen 483 YASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFI 544 (618)
T ss_pred HHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988777754 45566666666666667888889888888877666544
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.016 Score=58.21 Aligned_cols=114 Identities=10% Similarity=0.002 Sum_probs=75.4
Q ss_pred chhhHHHHHHHHHH-HhhhhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhh--------------------------
Q psy15227 54 NKYQLSWMVSLLDL-GNAISPIFAGILVEKIGRKTTLLLNALLCLPTWFLVVSN-------------------------- 106 (515)
Q Consensus 54 s~~~~~~~~s~~~l-g~~i~~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~-------------------------- 106 (515)
+++.+..+-....+ ...+...+..+++++++|.+++-+....+.....+.++.
T Consensus 56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~ 135 (491)
T PF03219_consen 56 GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFK 135 (491)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHH
Confidence 34455555554444 445567889999999999998877665555544444432
Q ss_pred ------hhhHHHHHHHHhhhhhhhccc-chhhhhhcccccccccccccccchhhhHHHHHHHHHhhHH
Q psy15227 107 ------KIECLYIARLFIGISKGVAYT-AMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHV 167 (515)
Q Consensus 107 ------~~~~l~~~r~l~G~~~g~~~~-~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~l 167 (515)
+.|.+.+.-++.-+-...... .-..+..|.++.+|-.|..++...+.++|.++++.+...+
T Consensus 136 ~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~ 203 (491)
T PF03219_consen 136 GFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYF 203 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122233333333333233322 3467788999999999999999999999999998877665
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >MTH00060 ND3 NADH dehydrogenase subunit 3; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=1.6e-05 Score=61.64 Aligned_cols=48 Identities=33% Similarity=0.626 Sum_probs=44.5
Q ss_pred cccccccccccccCCCCCCcccchHHHHHHHHHHHHHHHHHHhHhcch
Q psy15227 458 LRREKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSP 505 (515)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (515)
.+++|.+|+|||.+|.++.+.+++.++|..+.+|++||+|+.+.+|-+
T Consensus 33 ~~~~K~spyECGf~~~~~~~~~Fsi~FfliallFliFDvEiv~l~P~~ 80 (116)
T MTH00060 33 GGFSWVSSFECGFFSSGLSENCFSFTYFFLLVFFVIFDLEISLLLNMP 80 (116)
T ss_pred CCcccCCccCCCCCCCCCccCccceehHHHHHHHHHHHHHHHHHHHHH
Confidence 356888999999999999999999999999999999999999999954
|
|
| >PRK06073 NADH dehydrogenase subunit A; Validated | Back alignment and domain information |
|---|
Probab=97.85 E-value=9.1e-05 Score=58.39 Aligned_cols=48 Identities=19% Similarity=0.400 Sum_probs=44.1
Q ss_pred cccccccccccccCCCCCCcccchHHHHHHHHHHHHHHHHHHhHhcch
Q psy15227 458 LRREKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSP 505 (515)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (515)
.+++|.+++|||.+|..+.|.+++.|||.++.+|++||+|...-+|-+
T Consensus 36 ~~~~K~~~YEcG~~p~g~~r~~f~i~yyl~allFliFDvEvvfLfP~a 83 (124)
T PRK06073 36 PTPLKVSRYEAGNPPTGPAKLWLPMQYYGYLLLFLTLEPIVVLLLLIA 83 (124)
T ss_pred CCcccCCcccCCCCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888999999999999999999999999999999999999998844
|
|
| >PF00507 Oxidored_q4: NADH-ubiquinone/plastoquinone oxidoreductase, chain 3; InterPro: IPR000440 NADH:ubiquinone oxidoreductase (complex I) (1 | Back alignment and domain information |
|---|
Probab=97.76 E-value=1.5e-05 Score=61.60 Aligned_cols=47 Identities=55% Similarity=1.118 Sum_probs=26.7
Q ss_pred ccccccccccCCCCCCcccchHHHHHHHHHHHHHHHHHHhHhcchhh
Q psy15227 461 EKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSPLI 507 (515)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (515)
+|.+|+|||.+|.++.|.+++.|||.++.+|++||+|..+.+|-+..
T Consensus 22 ~k~s~yECG~~p~~~~~~~fs~~ff~i~ilFliFDvEivll~p~~~~ 68 (102)
T PF00507_consen 22 EKLSPYECGFDPFGSSRSPFSIQFFLIAILFLIFDVEIVLLFPWAFS 68 (102)
T ss_dssp -------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hhcChhhcCCCCCCcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999998874
|
6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This family contains chain 3 of the NADH-ubiquinone / plastoquinone oxidoreductase.; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0055114 oxidation-reduction process; PDB: 3RKO_A. |
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00011 Score=53.18 Aligned_cols=61 Identities=20% Similarity=0.328 Sum_probs=48.2
Q ss_pred hccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHHHHHHHHH
Q psy15227 28 WIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALLC 96 (515)
Q Consensus 28 ~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~~~~~l~ 96 (515)
..+...|.+|...+ +.+ +|..|+|.+.++..+...++++++|.++||+|+++..+....++
T Consensus 15 ~~g~~~Pfl~~~~~---~~G-----l~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 15 ALGCLYPFLPLYLK---QLG-----LSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred HHHHHHhhhhHhhh---hcC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 33444455554433 467 99999999999999999999999999999999988877765543
|
|
| >KOG1237|consensus | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0088 Score=61.42 Aligned_cols=150 Identities=17% Similarity=0.123 Sum_probs=112.1
Q ss_pred cchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhh-hhhhHHHHHHHHHHHHHHHHHHhh-h
Q psy15227 30 AWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEK-IGRKTTLLLNALLCLPTWFLVVSN-K 107 (515)
Q Consensus 30 ~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr-~Grr~~l~~~~~l~~i~~~~~~~~-~ 107 (515)
++....+.++.. .+| .+...+.-..+.+.-......+.+++++|. +||-+++.++.++..+|..+..++ .
T Consensus 55 g~~~nlv~ylt~---~~~-----~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~ 126 (571)
T KOG1237|consen 55 GLVSNLVTYLTL---ELH-----ASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAM 126 (571)
T ss_pred cchhHHHHHHHH---Hhc-----cchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556665555 377 777788888888888888999999999996 789999999998888886655544 2
Q ss_pred h-------------------------hHHHHHHHHhhhhhhhcccchhhhhhcccc---ccc---ccccccccchhhhHH
Q psy15227 108 I-------------------------ECLYIARLFIGISKGVAYTAMPIFIGEISE---HNI---RGALGSIPSGFQMVG 156 (515)
Q Consensus 108 ~-------------------------~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~---~~~---r~~~~~~~~~~~~lG 156 (515)
. ..+..+.-+..+|.|+.-+...+.-+|-++ +++ +...+.++....++|
T Consensus 127 ~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g 206 (571)
T KOG1237|consen 127 IPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGG 206 (571)
T ss_pred hhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHH
Confidence 1 256666778888999999999999999998 322 235667777778888
Q ss_pred HHHHHHHhhHH----HhHHHHHhhhHHHHHHHHHh
Q psy15227 157 TLAILLIGNHV----SYNSLNIALSILPVIFFILF 187 (515)
Q Consensus 157 ~~~~~~l~~~l----~wr~~f~i~~~~~~~~~~~~ 187 (515)
..++..+..+. +|.+-|.+..+...+..+++
T Consensus 207 ~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF 241 (571)
T KOG1237|consen 207 ALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIF 241 (571)
T ss_pred HHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHH
Confidence 88877666544 89998887777665555443
|
|
| >COG0838 NuoA NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00031 Score=54.87 Aligned_cols=48 Identities=35% Similarity=0.903 Sum_probs=43.6
Q ss_pred cccccccccccccCCCCCCcccchHHHHHHHHHHHHHHHHHHhHhcch
Q psy15227 458 LRREKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSP 505 (515)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (515)
++++|.+++|+|.+|.++.|.+++.||+..+.+|.+||+|.-.-+|=-
T Consensus 37 ~~~~K~~~YE~G~~p~g~a~~~f~~qyyl~ailFvvFDie~~fl~pwa 84 (123)
T COG0838 37 PNPEKLSPYECGNPPFGGARLRFSVQYYLVAILFVVFDVEVVFLFPWA 84 (123)
T ss_pred CCccccCccccCCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367788899999999999999999999999999999999998888743
|
|
| >PRK08489 NADH dehydrogenase subunit A; Validated | Back alignment and domain information |
|---|
Probab=97.65 E-value=5.3e-05 Score=60.27 Aligned_cols=47 Identities=38% Similarity=0.854 Sum_probs=41.2
Q ss_pred cccccccccccccCCCCCCcccchHHHHHHHHHHHHHHHHHHhHhcch
Q psy15227 458 LRREKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSP 505 (515)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (515)
++.+|.+++|||.+|.++. ++++.+||..+.+|++||+|+...+|-.
T Consensus 43 ~~~~K~s~yECGf~p~~~~-~~Fsi~FyliallFliFDlEiv~l~P~a 89 (129)
T PRK08489 43 TEKLKLAIYECGPEPVKQP-NRISSHFYIMALLFILFDVEIVFMFPWA 89 (129)
T ss_pred CCcccCCccccCCCCCCCC-ceeeeehHHHHHHHHHHHHHHHHHHHHH
Confidence 3467889999999997664 5699999999999999999999999953
|
|
| >KOG1479|consensus | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.005 Score=59.21 Aligned_cols=56 Identities=11% Similarity=-0.096 Sum_probs=37.1
Q ss_pred CCccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHH
Q psy15227 347 NFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITT 402 (515)
Q Consensus 347 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~ 402 (515)
.+.+..++...++++..+-..++...+..+.+|++++-.+-.+...+-..|-..|.
T Consensus 341 ~~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~ 396 (406)
T KOG1479|consen 341 ESDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGS 396 (406)
T ss_pred cCchHHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhh
Confidence 34556666777777776666677778888888888776665555555555544444
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00027 Score=51.18 Aligned_cols=60 Identities=15% Similarity=0.149 Sum_probs=52.5
Q ss_pred hchHHHHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhH
Q psy15227 267 GGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAA 326 (515)
Q Consensus 267 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~ 326 (515)
++.....-|.+.++++.|+++.+.+.+..+..+..+++.++.|.++||.++++.......
T Consensus 14 ~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~ 73 (77)
T PF12832_consen 14 AALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSL 73 (77)
T ss_pred HHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHH
Confidence 345677788899999999999999999999999999999999999999999887665443
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=97.47 E-value=1.6e-05 Score=81.12 Aligned_cols=165 Identities=12% Similarity=0.020 Sum_probs=1.9
Q ss_pred HHHHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCC-----
Q psy15227 270 TSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGE----- 344 (515)
Q Consensus 270 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~----- 344 (515)
.....-.+++-++.+++..+.+.+.+..-++.++..++..++.+|..|-+.+..+.++++++.+++.+-....+.
T Consensus 20 g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~ 99 (539)
T PF03137_consen 20 GYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEE 99 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCcccc
Confidence 333444455556679998999999999999999999999999998777778888888888888877654332110
Q ss_pred ---------------------------------CC----CCccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhh
Q psy15227 345 ---------------------------------LP----NFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQAS 387 (515)
Q Consensus 345 ---------------------------------~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~ 387 (515)
.. ...+..+++.++.|++.....++..+|+-|.++++..+...
T Consensus 100 ~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYi 179 (539)
T PF03137_consen 100 ASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYI 179 (539)
T ss_dssp ----------------------------------------------------SSS-------------------------
T ss_pred ccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccch
Confidence 00 01123344555566666777788889999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhh---------------------hc-hhHHHHHHHHHHHHHHHHHHH
Q psy15227 388 SCASVALAFGSFITTKFHILITKS---------------------LG-QHVIFFIYSSVHFCSVVFNYF 434 (515)
Q Consensus 388 g~~~~~~~lg~~~~~~~~g~l~~~---------------------~g-~~~~~~~~~~~~~~~~~~~~~ 434 (515)
|+......+|.++|-.+++...+. .| |+.-|++.+.+.++..+..+.
T Consensus 180 Gi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~ 248 (539)
T PF03137_consen 180 GILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFF 248 (539)
T ss_dssp ---------------------------------------------------------------------
T ss_pred hhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999988888887776655421 12 444566666666666555433
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0034 Score=56.24 Aligned_cols=51 Identities=14% Similarity=0.185 Sum_probs=38.2
Q ss_pred ccccccccccchhhhHHHHHH--HHHhh-----HH--HhHHHHHhhhHHHHHHHHHhhcc
Q psy15227 140 NIRGALGSIPSGFQMVGTLAI--LLIGN-----HV--SYNSLNIALSILPVIFFILFSFV 190 (515)
Q Consensus 140 ~~r~~~~~~~~~~~~lG~~~~--~~l~~-----~l--~wr~~f~i~~~~~~~~~~~~~~~ 190 (515)
|+|+..+.+...+.++|.++. |.+-. .+ +|++.+.+.+++.++.+++...+
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~if 61 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIF 61 (267)
T ss_pred CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 678899999999999998876 33322 11 89999998888887777665544
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00087 Score=67.01 Aligned_cols=156 Identities=19% Similarity=0.175 Sum_probs=98.5
Q ss_pred HhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhh-----CCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCCccH
Q psy15227 277 STLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDIL-----GRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYI 351 (515)
Q Consensus 277 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (515)
+.+.+++|.++.+.........+ --...++.|.++|.+ +||..+.++.++..++...+..... ...+...
T Consensus 14 ~~l~~~l~ls~~~~~~~~~~~~l-Pw~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~----~~~s~~~ 88 (433)
T PF03092_consen 14 PFLKDDLGLSPAQLQRLSSLASL-PWSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPA----SESSAAI 88 (433)
T ss_pred HHHHHHcCCCHHHHHHHHHHHhC-chHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhccc----ccchhhh
Confidence 34455577664443333332222 123567889999986 2455556666666555555444221 0122333
Q ss_pred HHHHHHHHHHHHhcccchhhhhhcccc---cchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHH
Q psy15227 352 PYITTLLYAASYYGIGCLPNILVSELF---PINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFCS 428 (515)
Q Consensus 352 ~~~~~~l~~~~~~~~~~~~~~~~~~~~---p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~ 428 (515)
..+.+++..++....-.+..+...|.. |.+ +|...+....+..+|++++..+.|.+.+..+++..|.+.+.+..+.
T Consensus 89 ~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~ 167 (433)
T PF03092_consen 89 AVVLLFLASFGYAFADVAADALVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLM 167 (433)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHH
Confidence 444445555555444455566677765 333 7788888899999999999999999999999988888887777777
Q ss_pred HHHHHHHhhc
Q psy15227 429 VVFNYFYLME 438 (515)
Q Consensus 429 ~~~~~~~~~~ 438 (515)
.+..++..+|
T Consensus 168 ~~~~~~~~~e 177 (433)
T PF03092_consen 168 LIVALFLLEE 177 (433)
T ss_pred HHHHHHhhhh
Confidence 6666555555
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >KOG2563|consensus | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0029 Score=61.05 Aligned_cols=125 Identities=15% Similarity=0.141 Sum_probs=86.7
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCCcc--HHHHHHHHHHHHH
Q psy15227 286 AYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQY--IPYITTLLYAASY 363 (515)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~ 363 (515)
+...+-+...++.+..++..+.+-|+.||.|-|....++....+++..+=.+...- ...+..+ ....+..+.+...
T Consensus 77 s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p--~v~~~f~~~l~~~Gq~iaa~Aq 154 (480)
T KOG2563|consen 77 SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLP--FVPPLFRRPLTHTGQSIAAAAQ 154 (480)
T ss_pred chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCc--cccccchhhhhHHhHHHHHHhh
Confidence 33456677888889999999999999999999999999999988887765442210 0112333 3344444444444
Q ss_pred hcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q psy15227 364 YGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSL 412 (515)
Q Consensus 364 ~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~ 412 (515)
........-...-.+|+++|+++..+..+.+.+|.+++..+-+.+..+.
T Consensus 155 ~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~ 203 (480)
T KOG2563|consen 155 PFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSS 203 (480)
T ss_pred hHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCC
Confidence 2222222234455689999999999999999999998888777666543
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.018 Score=48.15 Aligned_cols=110 Identities=8% Similarity=-0.039 Sum_probs=82.4
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhcccc
Q psy15227 289 GPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGC 368 (515)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 368 (515)
....-..+......+..++.+.+.+++|.|+.+.++.+...+-...... .+.+..+....+.|++.+..+.
T Consensus 38 ~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~---------~~~~~l~~~s~l~G~~~a~lW~ 108 (156)
T PF05978_consen 38 LGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFY---------PNSYTLYPASALLGFGAALLWT 108 (156)
T ss_pred ccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh---------hhHHHHHHHHHHHhhhhHHhhH
Confidence 3444556667778888899999999999999998888877755544332 3356677777788888866666
Q ss_pred hhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy15227 369 LPNILVSELFPINVRCQASSCASVALAFGSFITTKFHIL 407 (515)
Q Consensus 369 ~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~ 407 (515)
..-.++.+...++.+++..++.-.....+.++|..+.-.
T Consensus 109 aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~ 147 (156)
T PF05978_consen 109 AQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFF 147 (156)
T ss_pred hhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 666888888888899998888888777777777655433
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.023 Score=55.27 Aligned_cols=155 Identities=12% Similarity=0.014 Sum_probs=97.6
Q ss_pred HHhhhcc-cCCCCCCcchhHHHH-HHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCCccHHH
Q psy15227 276 SSTLLPK-LDNAYFGPDQCILVF-MIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPY 353 (515)
Q Consensus 276 ~~~~~~~-~g~~~~~~~~~~~~~-~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (515)
.|++... .+++..+...-..+. .=..+...+....+.|..+.|+.++.+.+...+...++.+ .++.....
T Consensus 27 ~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~--------~~sv~~mq 98 (412)
T PF01770_consen 27 TPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLF--------GTSVLAMQ 98 (412)
T ss_pred hHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH--------HCcHHHHH
Confidence 3444443 576655544333332 3344556667788999999999999988888777777666 55566666
Q ss_pred HHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhh--chhHHHHHHHHHHHHHHHH
Q psy15227 354 ITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSL--GQHVIFFIYSSVHFCSVVF 431 (515)
Q Consensus 354 ~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~--g~~~~~~~~~~~~~~~~~~ 431 (515)
+.-+.+|..... -...++++=...|+++--++.+.......+|..++..++-.+.... .+.....+..+...++.++
T Consensus 99 ~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~ 177 (412)
T PF01770_consen 99 LMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLI 177 (412)
T ss_pred HHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 667777666533 3344566666678888888899888888888888887776665532 2333333333333444444
Q ss_pred HHHHhhccc
Q psy15227 432 NYFYLMETK 440 (515)
Q Consensus 432 ~~~~~~~~~ 440 (515)
. +++|..+
T Consensus 178 ~-~fLP~~~ 185 (412)
T PF01770_consen 178 A-LFLPMPK 185 (412)
T ss_pred H-HHcCCCC
Confidence 3 4455443
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >KOG3626|consensus | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0083 Score=62.18 Aligned_cols=167 Identities=13% Similarity=0.024 Sum_probs=119.6
Q ss_pred HHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhC-----------
Q psy15227 275 YSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQG----------- 343 (515)
Q Consensus 275 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~----------- 343 (515)
-..++-+..+++..+.+.+....-++..+...+..+...|..|-+.+-.+.++++++.++..+-....+
T Consensus 119 ~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~ 198 (735)
T KOG3626|consen 119 VITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQ 198 (735)
T ss_pred hhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhc
Confidence 333444446888889999999999999999999999999988888998999999998888776532211
Q ss_pred ----C----------------------C---CCC---cc-HHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHH
Q psy15227 344 ----E----------------------L---PNF---QY-IPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCA 390 (515)
Q Consensus 344 ----~----------------------~---~~~---~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~ 390 (515)
+ . ... .+ +.....++.|+|....++...+|+-|...+++.....|+.
T Consensus 199 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~ 278 (735)
T KOG3626|consen 199 SVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGIL 278 (735)
T ss_pred cccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHH
Confidence 0 0 011 12 2334455556666778888889999999999889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh------------------c-hhHHHHHHHHHHHHHHHHHHHHhhccccc
Q psy15227 391 SVALAFGSFITTKFHILITKSL------------------G-QHVIFFIYSSVHFCSVVFNYFYLMETKQK 442 (515)
Q Consensus 391 ~~~~~lg~~~~~~~~g~l~~~~------------------g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (515)
..+..+|.++|-.+++.....+ | |+.-|++.+.+.++..+.. ++.|+...+
T Consensus 279 ~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~-f~fPk~lp~ 348 (735)
T KOG3626|consen 279 YSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPL-FFFPKELPK 348 (735)
T ss_pred HHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHH-HhCcccCcc
Confidence 9999999888888877665321 1 4456777777777776665 444544433
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.052 Score=54.31 Aligned_cols=121 Identities=7% Similarity=-0.117 Sum_probs=77.2
Q ss_pred CcchhHHHHHHHHHHH-HHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCC--------------------
Q psy15227 289 GPDQCILVFMIIMFLS-NFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPN-------------------- 347 (515)
Q Consensus 289 ~~~~~~~~~~~~~~~~-~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------- 347 (515)
....+.+...+...+. .++.+++++|++|++............+.+++.......+.-+
T Consensus 44 ~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i 123 (472)
T TIGR00769 44 IIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFI 123 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHH
Confidence 3334444443443444 7888999999999998877666666666655554331111000
Q ss_pred ---CccHHHHHHHHHHHHHhcccc-hhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy15227 348 ---FQYIPYITTLLYAASYYGIGC-LPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILIT 409 (515)
Q Consensus 348 ---~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~ 409 (515)
..|.................+ +.+.+++|.+..++..+-.++....+++|..+++.+..++.
T Consensus 124 ~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 124 AILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 012222222222222222233 67889999999999999999999999999999999988876
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.031 Score=52.59 Aligned_cols=137 Identities=22% Similarity=0.148 Sum_probs=86.6
Q ss_pred HHHHhhhcccCCCC--CCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCCccH
Q psy15227 274 TYSSTLLPKLDNAY--FGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYI 351 (515)
Q Consensus 274 ~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (515)
...+.+..+.+.+. ...+.......+...++.+..|.+.||.|||+.+..+......+.+...+. . ....+.
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~ 96 (338)
T COG0477 23 PALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALA-P-----NVGLAL 96 (338)
T ss_pred HHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhC-c-----cchHHH
Confidence 34444444443332 245677777778888888999999999999977766665433332333220 0 112333
Q ss_pred HHHHHHHHHHHHhcccchhhhhhcccccc-hhhhhhhhHHHH-HHHHHHHHHHHHHHHHHhh--hchhH
Q psy15227 352 PYITTLLYAASYYGIGCLPNILVSELFPI-NVRCQASSCASV-ALAFGSFITTKFHILITKS--LGQHV 416 (515)
Q Consensus 352 ~~~~~~l~~~~~~~~~~~~~~~~~~~~p~-~~r~~~~g~~~~-~~~lg~~~~~~~~g~l~~~--~g~~~ 416 (515)
..+.....+.+.+...+....+..|..|+ +.|+...+.... ...++..+++.+.+.+.+. .+|+.
T Consensus 97 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (338)
T COG0477 97 LLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRA 165 (338)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 33333334444456677778899999887 678888888877 5778888888776666654 35554
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.01 Score=58.21 Aligned_cols=115 Identities=13% Similarity=-0.019 Sum_probs=85.2
Q ss_pred hhHHHhhHHHHHHHHHHHHHHHhhCC-CCCCccHHHHHHHHHHHHHhcccchhhhhhcccccch---hhhhhhhHHHHHH
Q psy15227 319 PLSCFSAALGCLLTFSTGLFYLYQGE-LPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPIN---VRCQASSCASVAL 394 (515)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~---~r~~~~g~~~~~~ 394 (515)
+++.++.++..++.+++.+....... .........+++.+.++|.++.-|...++.+|.++++ .|...+.......
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 45677888888888886654432111 1122356777788888888999999999999999875 4566777889999
Q ss_pred HHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHH
Q psy15227 395 AFGSFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFNY 433 (515)
Q Consensus 395 ~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 433 (515)
++|..+++...+++.++.||...|.+.++..+++.+..+
T Consensus 82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~ 120 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFL 120 (372)
T ss_dssp HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999888888887766543
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.00068 Score=64.48 Aligned_cols=111 Identities=23% Similarity=0.125 Sum_probs=3.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhh-CCchhHHHhhHHHHHHHHHHHHHHHhhC------CCCCCccHHHHHHHHHHHHHh
Q psy15227 292 QCILVFMIIMFLSNFLQAPLMDIL-GRKPLSCFSAALGCLLTFSTGLFYLYQG------ELPNFQYIPYITTLLYAASYY 364 (515)
Q Consensus 292 ~~~~~~~~~~~~~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~~ 364 (515)
.....+.++..+|+.+.++..-+. ++|.+. ...+.-.+. +.+.+.....+ ..-.+.+..++.++++++..+
T Consensus 186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~-~~s~~R~~f-iPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNG 263 (309)
T PF01733_consen 186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLW-ILSLLRFLF-IPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNG 263 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcchhcceeEecccccccHH-HHHHHHHHH-HHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccc
Confidence 356678899999999888753221 233333 222222111 11111121110 012234555666777777777
Q ss_pred cccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHH
Q psy15227 365 GIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKF 404 (515)
Q Consensus 365 ~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~ 404 (515)
-..+....+..+..++++|..+-.+...+-.+|-.+|..+
T Consensus 264 yl~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~l 303 (309)
T PF01733_consen 264 YLSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVL 303 (309)
T ss_dssp ---HHHH---------------------------------
T ss_pred hhhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777888888888888888777777777776666554
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >KOG0637|consensus | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.01 Score=57.46 Aligned_cols=154 Identities=16% Similarity=0.037 Sum_probs=97.4
Q ss_pred hHHHHHHHHHHHHHhhchHHHHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhh----hCCchhHHH-hhH
Q psy15227 252 RAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDI----LGRKPLSCF-SAA 326 (515)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~grr~~~~~-~~~ 326 (515)
+.++....+....+++ ...-..|.+.++++.|.+..-.+.......+.+++.+++.|..+|| +||||..+. +..
T Consensus 32 ~~li~v~~ia~Gvqf~-wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~ 110 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFG-WALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL 110 (498)
T ss_pred HHHHHHHHHHHHHHHH-HHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhH
Confidence 3344444455555543 4566778888899999988888888888889999999999999996 677776544 445
Q ss_pred HHHHHHHHHHHHHHhhC---CCCCC-ccHHHH-----HHHHHHHHHhcccchhhhhhcccccchhhhh-hhhHHHHHHHH
Q psy15227 327 LGCLLTFSTGLFYLYQG---ELPNF-QYIPYI-----TTLLYAASYYGIGCLPNILVSELFPINVRCQ-ASSCASVALAF 396 (515)
Q Consensus 327 ~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~-----~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~-~~g~~~~~~~l 396 (515)
...+++++++....... +.... .....+ ...+.-+.........-++..|+..++.+.+ +++....+..+
T Consensus 111 ~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~av 190 (498)
T KOG0637|consen 111 LIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAV 190 (498)
T ss_pred HHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHh
Confidence 55555555544332211 11111 111222 2222333332233344578888887777777 99999999999
Q ss_pred HHHHHHHHHH
Q psy15227 397 GSFITTKFHI 406 (515)
Q Consensus 397 g~~~~~~~~g 406 (515)
|+.+|-.+.+
T Consensus 191 GnvLGY~~g~ 200 (498)
T KOG0637|consen 191 GNVLGYALGS 200 (498)
T ss_pred cceeeeeccc
Confidence 8888766554
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.21 Score=49.53 Aligned_cols=168 Identities=13% Similarity=0.067 Sum_probs=90.0
Q ss_pred HHHHHHHHhhhcccCC-CCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHH----HHHHHHhhCC
Q psy15227 270 TSMITYSSTLLPKLDN-AYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFS----TGLFYLYQGE 344 (515)
Q Consensus 270 ~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~----~~~~~~~~~~ 344 (515)
-...+-.+.++.+..- +-.-.+.....-.+..++.+...|...||..|.+....+.+..-++... +.........
T Consensus 19 R~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~ 98 (432)
T PF06963_consen 19 RMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSS 98 (432)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 3344444444444321 2122344445556677778888899999999988766655443222221 1111111110
Q ss_pred CCCCccHH---HHHHHHHHHHHhcccchhhhh------hcccc--cchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy15227 345 LPNFQYIP---YITTLLYAASYYGIGCLPNIL------VSELF--PINVRCQASSCASVALAFGSFITTKFHILITKSLG 413 (515)
Q Consensus 345 ~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~------~~~~~--p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~g 413 (515)
...+.+.. .+...+.+... -........ +..+. +++.....++...-.-.+...++|.+.|.+.+..+
T Consensus 99 ~~~~~~~~~~l~~~~~~~~~i~-~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s 177 (432)
T PF06963_consen 99 SSQSSWLFIALFALLILLGAIE-RLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFAS 177 (432)
T ss_pred ccccchHHHHHHHHHHHHHHHH-HHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 00012222 11112222211 111111111 11222 34455666666666777889999999999999888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhc
Q psy15227 414 QHVIFFIYSSVHFCSVVFNYFYLME 438 (515)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (515)
......+.++..+++..+=++++.+
T Consensus 178 ~~~~~~~i~~~N~~S~~vEy~~l~~ 202 (432)
T PF06963_consen 178 PVIAAIFIAGWNLASVFVEYFLLAR 202 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888877766555543
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.1 Score=53.31 Aligned_cols=113 Identities=16% Similarity=0.185 Sum_probs=64.9
Q ss_pred cchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHHHHHHHHHH---HHHHHHHhh-hh-----hHHHHHHHHhhhhhh
Q psy15227 53 LNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALLCL---PTWFLVVSN-KI-----ECLYIARLFIGISKG 123 (515)
Q Consensus 53 ~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~~~~~l~~---i~~~~~~~~-~~-----~~l~~~r~l~G~~~g 123 (515)
-+..+.+.+.+++.+|..+|+.+++++.++--|+.. .+-+.+.. ++..+.... .+ ..++..-++.|+..|
T Consensus 47 ~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~-~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~G 125 (521)
T PRK03612 47 DSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFV-AVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGLLIG 125 (521)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888999999999999999999988754333322 22111111 111111111 11 223344556788888
Q ss_pred hcccchhhhhhcccccccccccccccchhhhHHHHHHHHHhhHH
Q psy15227 124 VAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHV 167 (515)
Q Consensus 124 ~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~l 167 (515)
+..|....+..+... ++-+...|-......+|.++|.++.+++
T Consensus 126 ~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~v 168 (521)
T PRK03612 126 MEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFL 168 (521)
T ss_pred HHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHH
Confidence 888877766655332 1234445555566666666665555443
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.028 Score=54.62 Aligned_cols=111 Identities=21% Similarity=0.153 Sum_probs=81.4
Q ss_pred cchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHHHHHHHHH--HHH---HHHHHhh-hhhHHHHHHHHhhhhhhhcc
Q psy15227 53 LNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALLC--LPT---WFLVVSN-KIECLYIARLFIGISKGVAY 126 (515)
Q Consensus 53 ~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~~~~~l~--~i~---~~~~~~~-~~~~l~~~r~l~G~~~g~~~ 126 (515)
-..++..+...+|.+|-.++.--...+ |+ |++.+.+.+-. .+. ....-+. +.|..++.-+..|+..|..+
T Consensus 278 ~~r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~Y 353 (402)
T PF02487_consen 278 SPRDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASY 353 (402)
T ss_pred CHHHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHH
Confidence 346678888888888877764332221 33 33333332222 222 2222233 78888899999999999999
Q ss_pred cchhhhhhcccccccccccccccchhhhHHHHHHHHHhhHH
Q psy15227 127 TAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHV 167 (515)
Q Consensus 127 ~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~l 167 (515)
+.....+.|-.++++|...++..+.+-++|..++..++-.+
T Consensus 354 VNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l 394 (402)
T PF02487_consen 354 VNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL 394 (402)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999888655
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.016 Score=42.36 Aligned_cols=68 Identities=10% Similarity=-0.058 Sum_probs=60.4
Q ss_pred HHHHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHH
Q psy15227 270 TSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGL 337 (515)
Q Consensus 270 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~ 337 (515)
..+...+|.+.++.+++..+.+.+.+...++..+|.+...++.++.++++.+..+.+...+..+.+++
T Consensus 9 FayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~ 76 (85)
T PF06779_consen 9 FAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMAL 76 (85)
T ss_pred HHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 45666789999999999999999999999999999999999999988888888888888888888777
|
Note that many members are hypothetical proteins. |
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.35 Score=48.26 Aligned_cols=29 Identities=10% Similarity=0.061 Sum_probs=14.0
Q ss_pred HHHHHHHHHHhcccchhhhhhcccccchhh
Q psy15227 354 ITTLLYAASYYGIGCLPNILVSELFPINVR 383 (515)
Q Consensus 354 ~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r 383 (515)
+...+.+.+.+......+.+.+ .+|++..
T Consensus 111 ~~v~~~g~~~~~~q~s~~gla~-~fp~~~~ 139 (437)
T TIGR00939 111 ASVVIINSGMALLQGSLFGLAG-VFPSTYS 139 (437)
T ss_pred HHHHHHHhhhhhhcccchhhcc-cCCHHHH
Confidence 3333344343444445445554 5687654
|
|
| >KOG3098|consensus | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.093 Score=52.00 Aligned_cols=107 Identities=19% Similarity=0.219 Sum_probs=80.9
Q ss_pred HHHHHHHHHHhhhhhhhHhhhhh---hhhhhHHHHHHHHHHHHHHHHHHhh---h----------------hhHHHHHHH
Q psy15227 59 SWMVSLLDLGNAISPIFAGILVE---KIGRKTTLLLNALLCLPTWFLVVSN---K----------------IECLYIARL 116 (515)
Q Consensus 59 ~~~~s~~~lg~~i~~~~~G~l~D---r~Grr~~l~~~~~l~~i~~~~~~~~---~----------------~~~l~~~r~ 116 (515)
+...-...+|..++..+.+.+++ ++||++.+.++..+..++.++.... + +...++.-+
T Consensus 282 ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~ 361 (461)
T KOG3098|consen 282 AIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGF 361 (461)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHH
Confidence 34344455556666677777775 4899999999999988888887765 2 446677789
Q ss_pred HhhhhhhhcccchhhhhhcccccccccccccccchhhhHHHHHHHHHhhH
Q psy15227 117 FIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNH 166 (515)
Q Consensus 117 l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~ 166 (515)
+.|++-+......+..+.+.+ +++|..+.++.-.-..++..++......
T Consensus 362 l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~ 410 (461)
T KOG3098|consen 362 LLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPY 410 (461)
T ss_pred HHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 999999999999999999999 5568888888777777777666555443
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.34 Score=49.58 Aligned_cols=68 Identities=9% Similarity=-0.070 Sum_probs=43.7
Q ss_pred hcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHh-hhchhHHHHHHHHHHHHHHHHH
Q psy15227 364 YGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITK-SLGQHVIFFIYSSVHFCSVVFN 432 (515)
Q Consensus 364 ~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~-~~g~~~~~~~~~~~~~~~~~~~ 432 (515)
+...|...-+..+. ..+.-+...|-.+....+|+++|+.+.+.+.- ..|.....++.+.+.++++++.
T Consensus 125 G~~~Pl~~~~~~~~-~~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~~~ 193 (521)
T PRK03612 125 GMEIPLLMRILQRI-RDQHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAALVF 193 (521)
T ss_pred HHHHHHHHHHHHhc-cccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 44455544333332 22234667788899999999999999887764 6776666666666655555443
|
|
| >KOG1479|consensus | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.57 Score=45.43 Aligned_cols=32 Identities=13% Similarity=-0.019 Sum_probs=15.5
Q ss_pred HHHHHHHHHhcccchhhhhhcccccchhhhhhh
Q psy15227 355 TTLLYAASYYGIGCLPNILVSELFPINVRCQAS 387 (515)
Q Consensus 355 ~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~ 387 (515)
...+.+.+.+......+...++ +|++.....+
T Consensus 123 ~vv~~~~a~a~~qgs~~G~a~~-~P~~ytqavm 154 (406)
T KOG1479|consen 123 IVVLLNLANAVVQGSLYGLAGL-FPSEYTQAVM 154 (406)
T ss_pred HHHHHhhhhhhhccchhhhhhc-CCHHHHHHHH
Confidence 3333444434444444455555 4777654433
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.99 Score=45.64 Aligned_cols=111 Identities=11% Similarity=0.027 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCC---CC------------CCccHHH-----HHHHHH
Q psy15227 300 IMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGE---LP------------NFQYIPY-----ITTLLY 359 (515)
Q Consensus 300 ~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~---~~------------~~~~~~~-----~~~~l~ 359 (515)
+.++...+-.+++++++|+++.............++++......+ ++ .-.+... .....+
T Consensus 71 ~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfY 150 (491)
T PF03219_consen 71 VAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFY 150 (491)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHH
Confidence 445566778889999999998777666666655555554321110 00 0000000 001111
Q ss_pred HHHH---hcccc-hhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q psy15227 360 AASY---YGIGC-LPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITK 410 (515)
Q Consensus 360 ~~~~---~~~~~-~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~ 410 (515)
.... ....+ ..+.+.+|.++.++..+-.++.....++|.++++.+...+.+
T Consensus 151 v~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 151 VMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 11122 457889999999999999999999999999999998888777
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >KOG3880|consensus | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.18 Score=46.38 Aligned_cols=128 Identities=16% Similarity=0.085 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHhhhhhhhcccchhhhhhcc
Q psy15227 58 LSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALLCLPTWFLVVSN-KIECLYIARLFIGISKGVAYTAMPIFIGEI 136 (515)
Q Consensus 58 ~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~ 136 (515)
.|.+.-+-.+...+-.+.+....||+---.=..+..++.+.+..+.+++ +.++-+.+-.+..++.|.....-.++-+ .
T Consensus 64 tg~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~lss-~ 142 (409)
T KOG3880|consen 64 TGAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLALSS-R 142 (409)
T ss_pred cchhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhhhc-c
Confidence 3444445555666666677777888543333344566777777888888 8999888888888888876555444332 2
Q ss_pred cccccccccccccchhhhHHHHHHHHHh----hHH--HhHHHHHhhhHHHHHHHHHhhcc
Q psy15227 137 SEHNIRGALGSIPSGFQMVGTLAILLIG----NHV--SYNSLNIALSILPVIFFILFSFV 190 (515)
Q Consensus 137 ~~~~~r~~~~~~~~~~~~lG~~~~~~l~----~~l--~wr~~f~i~~~~~~~~~~~~~~~ 190 (515)
++ ....+.++.+.+.+.++|..-- .+. +-|...++...+.++.+...+++
T Consensus 143 Y~----~~~i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~l 198 (409)
T KOG3880|consen 143 YP----SIVIAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFL 198 (409)
T ss_pred CC----CceeccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHhe
Confidence 32 3344556666666556554322 222 45777777777776666666653
|
|
| >KOG1237|consensus | Back alignment and domain information |
|---|
Probab=93.74 E-value=1.9 Score=44.69 Aligned_cols=153 Identities=18% Similarity=0.108 Sum_probs=100.7
Q ss_pred cccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhh-CCchhHHHhhHHHHHHHHHHHHHHHhhCCC--------C----C
Q psy15227 281 PKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDIL-GRKPLSCFSAALGCLLTFSTGLFYLYQGEL--------P----N 347 (515)
Q Consensus 281 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~----~ 347 (515)
...+.+...+...............+++++++|.+ ||-+++.++..+..++..++.+........ . .
T Consensus 66 ~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~ 145 (571)
T KOG1237|consen 66 LELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCE 145 (571)
T ss_pred HHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCccc
Confidence 33444434555566666777777889999999975 788888888888888877766654433200 0 0
Q ss_pred --Cc-c--HHHHHHHHHHHHHhcccchhhhhhcccccc----hhhh--hhhhHHHHHHHHHHHHHHHHHHHHHhhhchhH
Q psy15227 348 --FQ-Y--IPYITTLLYAASYYGIGCLPNILVSELFPI----NVRC--QASSCASVALAFGSFITTKFHILITKSLGQHV 416 (515)
Q Consensus 348 --~~-~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~----~~r~--~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~ 416 (515)
.. . .....+.+..++.++.-|...++-+|-+++ +.+. .-+.......++|..++-.+.-+.-++.+|..
T Consensus 146 ~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~l 225 (571)
T KOG1237|consen 146 SPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKL 225 (571)
T ss_pred CcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhccccee
Confidence 10 1 122222233334466677777888888872 2223 45566677788888888888888888899988
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy15227 417 IFFIYSSVHFCSVVFNY 433 (515)
Q Consensus 417 ~~~~~~~~~~~~~~~~~ 433 (515)
.|.+..++..++.++.+
T Consensus 226 gf~i~~~~~~lai~iF~ 242 (571)
T KOG1237|consen 226 GFGIPTVLNALAILIFL 242 (571)
T ss_pred eccHHHHHHHHHHHHHH
Confidence 88888777777665543
|
|
| >KOG4332|consensus | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.43 Score=43.17 Aligned_cols=156 Identities=12% Similarity=-0.048 Sum_probs=79.1
Q ss_pred hhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCCccHHHHHHH
Q psy15227 278 TLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTL 357 (515)
Q Consensus 278 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (515)
++.+++|+...+.+.+.........+...+.|-+.||.|||+.-....+ ...+..+.-. ++......+.-.
T Consensus 62 yLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtyci----tYiLsCiTKh-----SpqYkVLmVGR~ 132 (454)
T KOG4332|consen 62 YLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCI----TYILSCITKH-----SPQYKVLMVGRV 132 (454)
T ss_pred eeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehH----HHHHHHHhhc-----CCceEEEeehhh
Confidence 3455667777788877777666777777888899999999986433222 2222222111 222233334444
Q ss_pred HHHHHHhcccchhh-hhhcccc-----cchhhhhhhhHHH-HHHHHHHHHHHHHHHHHHhhh--chhHHHHHHHHHHHHH
Q psy15227 358 LYAASYYGIGCLPN-ILVSELF-----PINVRCQASSCAS-VALAFGSFITTKFHILITKSL--GQHVIFFIYSSVHFCS 428 (515)
Q Consensus 358 l~~~~~~~~~~~~~-~~~~~~~-----p~~~r~~~~g~~~-~~~~lg~~~~~~~~g~l~~~~--g~~~~~~~~~~~~~~~ 428 (515)
+-|+.....++..- -++.|.. |.+-.....+=.. ..+.+-.+++...+..+.|.+ |.-.+|-..+.+..++
T Consensus 133 LGGiaTsLLFSaFEsWliaEHnekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLaig 212 (454)
T KOG4332|consen 133 LGGIATSLLFSAFESWLIAEHNEKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAIG 212 (454)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhhccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHH
Confidence 44444322222222 3445543 2222222222222 233445555665666666655 4445666555555555
Q ss_pred HHHHHHHhhccccc
Q psy15227 429 VVFNYFYLMETKQK 442 (515)
Q Consensus 429 ~~~~~~~~~~~~~~ 442 (515)
..+.+--..|..++
T Consensus 213 mAvil~~W~ENygd 226 (454)
T KOG4332|consen 213 MAVILSSWSENYGD 226 (454)
T ss_pred HHHHHhhhhhccCC
Confidence 54443333344433
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=93.34 E-value=9.5 Score=38.10 Aligned_cols=123 Identities=8% Similarity=-0.018 Sum_probs=77.4
Q ss_pred CCcchhHHHHHH-HHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCC---------------CC-CCc-
Q psy15227 288 FGPDQCILVFMI-IMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGE---------------LP-NFQ- 349 (515)
Q Consensus 288 ~~~~~~~~~~~~-~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~-~~~- 349 (515)
+....+-...-+ ++++..++..++.+++.++++...........++++++..+...+ .+ .-.
T Consensus 61 e~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~ 140 (509)
T COG3202 61 ESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKW 140 (509)
T ss_pred hhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCcccee
Confidence 444444444444 566777788888899999888777666666666666655432110 01 111
Q ss_pred -------cHHHHHHHHHHHHH-hcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q psy15227 350 -------YIPYITTLLYAASY-YGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITK 410 (515)
Q Consensus 350 -------~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~ 410 (515)
|.......+.-... ....-+.+....|+...++..+-.++.+...+++..++..+..++.+
T Consensus 141 ~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k 209 (509)
T COG3202 141 FILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSK 209 (509)
T ss_pred eeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 22111111111111 12222456788999999999999999999999999999998888776
|
|
| >KOG3097|consensus | Back alignment and domain information |
|---|
Probab=92.89 E-value=8.5 Score=36.29 Aligned_cols=72 Identities=19% Similarity=0.286 Sum_probs=55.2
Q ss_pred HHhhhhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhhhhcccchhhhhhcccc
Q psy15227 67 LGNAISPIFAGILVEKIGRKTTLLLNALLCLPTWFLVVSNKIECLYIARLFIGISKGVAYTAMPIFIGEISE 138 (515)
Q Consensus 67 lg~~i~~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~ 138 (515)
+..+.++.+.+.+..++|-|+++.++...+.........-.+..++..-...|+|.+..+..--+|+++.-.
T Consensus 69 ~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~ 140 (390)
T KOG3097|consen 69 LSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIAANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQ 140 (390)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcchhHHhhccHHHhhccccccccccCcceecHHHH
Confidence 344445555568899999999999988877654433322278899999999999999999988888887654
|
|
| >KOG3574|consensus | Back alignment and domain information |
|---|
Probab=88.17 E-value=11 Score=36.38 Aligned_cols=69 Identities=20% Similarity=0.206 Sum_probs=35.5
Q ss_pred hhHHHHHHHHHHHHHhhchHHHHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHh-----hhCCchhHHH
Q psy15227 251 RRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMD-----ILGRKPLSCF 323 (515)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-----~~grr~~~~~ 323 (515)
++.+....+++..+ ........ -.|.+++..+.+-.+.+....... -.---++..++.| |+|||+..++
T Consensus 30 ~~~illLl~LYllQ-GiP~GL~~-~iP~lL~ak~vSyt~~a~fS~ay~--P~sLKllWaPiVDs~y~k~~GrrksWvv 103 (510)
T KOG3574|consen 30 RSSILLLLFLYLLQ-GIPLGLIG-AIPLLLQAKGVSYTSQAIFSFAYW--PFSLKLLWAPIVDSVYSKRFGRRKSWVV 103 (510)
T ss_pred hhhHHHHHHHHHHc-CCchhHhh-hhHHHhcCCCcchhhhhhhhhhhh--HHHHHHHHHhhhHHHHHHhhccccceee
Confidence 33444445554443 33334333 778888866665434333322211 1112344555666 9999986544
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=87.58 E-value=4.4 Score=40.53 Aligned_cols=62 Identities=13% Similarity=0.136 Sum_probs=29.5
Q ss_pred HHHhhhcc--cCCCCCCcch---hHHHHHHHHHHHHHHHHHHHhhhCCchhHHHh-hHHHHHHHHHHH
Q psy15227 275 YSSTLLPK--LDNAYFGPDQ---CILVFMIIMFLSNFLQAPLMDILGRKPLSCFS-AALGCLLTFSTG 336 (515)
Q Consensus 275 ~~~~~~~~--~g~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~-~~~~~~~~~~~~ 336 (515)
-.|.++++ .+.+-.+.+. ..-++++=-+-+.++=...++|+|||+..++- -.+.++.++.++
T Consensus 22 siPflL~~~~~~~sy~q~~~fSla~~PfSlKlLWaPiVDs~y~~~~GRRKSWiiP~Q~l~g~~m~~l~ 89 (544)
T PF13000_consen 22 SIPFLLQSMAKKVSYSQQAIFSLASYPFSLKLLWAPIVDSVYSKRIGRRKSWIIPIQYLSGILMLYLS 89 (544)
T ss_pred cchhhhccccCCCChhHheeeeeeechhHHHHhhhhhhhhhcccccCCcchhhhHHHHHHHHHHHHHH
Confidence 45666666 3333223322 22233333333444444556789999876542 333344444433
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea | Back alignment and domain information |
|---|
Probab=80.09 E-value=16 Score=35.95 Aligned_cols=20 Identities=20% Similarity=0.217 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHhhhC
Q psy15227 297 FMIIMFLSNFLQAPLMDILG 316 (515)
Q Consensus 297 ~~~~~~~~~~~~g~l~d~~g 316 (515)
..+..++...+.|++..|.+
T Consensus 4 ~~i~~i~~ii~~G~~~~~~~ 23 (385)
T PF03547_consen 4 SAILPIFLIILLGYLLGRFG 23 (385)
T ss_pred HHHHHHHHHHHHHHHHHHhC
Confidence 34455666666777777654
|
Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 515 | ||||
| 4gby_A | 491 | The Structure Of The Mfs (Major Facilitator Superfa | 4e-11 | ||
| 3rko_A | 147 | Crystal Structure Of The Membrane Domain Of Respira | 7e-04 |
| >pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491 | Back alignment and structure |
|
| >pdb|3RKO|A Chain A, Crystal Structure Of The Membrane Domain Of Respiratory Complex I From E. Coli At 3.0 Angstrom Resolution Length = 147 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 515 | |||
| 3rko_A | 147 | NADH-quinone oxidoreductase subunit A; complex I, | 1e-12 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-11 |
| >3rko_A NADH-quinone oxidoreductase subunit A; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli} Length = 147 | Back alignment and structure |
|---|
Score = 64.7 bits (158), Expect = 1e-12
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 460 REKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFP 503
R K PFE G D + R+ S F+ +A+ F+IFD+E +F
Sbjct: 44 RSKNVPFESGIDSVGSARLRLSAKFYLVAMFFVIFDVEALYLFA 87
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 66.0 bits (160), Expect = 2e-11
Identities = 80/425 (18%), Positives = 124/425 (29%), Gaps = 122/425 (28%)
Query: 29 IAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTT 88
I W + +K LE L K + + S I I +
Sbjct: 184 IFW--LNLKNCNSPETVLEM----LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ-AELRR 236
Query: 89 LLLNALL--CLPTWFLV---VSNK-------IEC--LYIARLFIGISKGVAYTAMPIFIG 134
LL + CL LV V N + C L R K V
Sbjct: 237 LLKSKPYENCL----LVLLNVQNAKAWNAFNLSCKILLTTR-----FKQVTDFLSAATTT 287
Query: 135 EIS-EHNIRG------------ALGSIPSGF--QMVGT--LAILLIG------------- 164
IS +H+ L P +++ T + +I
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW 347
Query: 165 NHVSYNSLN--IALSI--L-PVIF---FILFSFVPETPHFHAAKNNLKKTEKSLK--WYR 214
HV+ + L I S+ L P + F S P + L W+
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP---------SAHIPTILLSLIWFD 398
Query: 215 GNKKDVMEEMNSIMDKT--QEDLKSKT-----GYLELLTNKSNRRAFTLVMAASLFQRLG 267
K DVM +N + + ++ K T YLEL N A + S+
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA----LHRSIVDHY- 453
Query: 268 GITSMITYSSTLLPKLDNAYF-----------GPDQCILVFMIIMFLS-NFLQAPLMDIL 315
I + P LD YF + + +F ++ FL FL+ +
Sbjct: 454 NIPKTFDSDDLIPPYLDQ-YFYSHIGHHLKNIEHPERMTLFRMV-FLDFRFLEQKI---- 507
Query: 316 GRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYI----PYITTLLYAASYYGIGCLPN 371
R + ++A+ L T FY YI P L+ A + N
Sbjct: 508 -RHDSTAWNASGSILNTLQQLKFYK--------PYICDNDPKYERLVNAILDFLPKIEEN 558
Query: 372 ILVSE 376
++ S+
Sbjct: 559 LICSK 563
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 515 | |||
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 100.0 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 100.0 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 100.0 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 100.0 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.97 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.96 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.95 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.54 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.47 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.47 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.46 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.38 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.24 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.03 | |
| 3rko_A | 147 | NADH-quinone oxidoreductase subunit A; complex I, | 98.34 |
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-47 Score=386.98 Aligned_cols=436 Identities=21% Similarity=0.294 Sum_probs=345.4
Q ss_pred chhHHHHHHHHHHHHHHhhhhhccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhh
Q psy15227 7 SYVYQIIATNTASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRK 86 (515)
Q Consensus 7 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr 86 (515)
++++.|.+.++.+++.++.|+|.+.++..+|.+.++...-++.+.+.+..+.|++.+++.+|..+|++++|+++||+|||
T Consensus 6 ~~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk 85 (491)
T 4gc0_A 6 NSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRR 85 (491)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHH
T ss_pred ChHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 44567788888899999999999999999887754211011111125667789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH------------------hh-hhhHHHHHHHHhhhhhhhcccchhhhhhccccccccccccc
Q psy15227 87 TTLLLNALLCLPTWFLVV------------------SN-KIECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGS 147 (515)
Q Consensus 87 ~~l~~~~~l~~i~~~~~~------------------~~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~ 147 (515)
++++++.+++.+++++++ ++ |+++++++|+++|+|.|+..+...++++|+.|+++|++..+
T Consensus 86 ~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~ 165 (491)
T 4gc0_A 86 DSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVS 165 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHH
Confidence 999999999999999998 47 99999999999999999999999999999999999999999
Q ss_pred ccchhhhHHHHHHHHHhhHH------------HhHHHHHhhhHHHHHHHHHhhcccCcchhhhhcCChhHHHHHHHhhcC
Q psy15227 148 IPSGFQMVGTLAILLIGNHV------------SYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRG 215 (515)
Q Consensus 148 ~~~~~~~lG~~~~~~l~~~l------------~wr~~f~i~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~ 215 (515)
+.+.+..+|.++++.++... +||+.+.+..++.++..+..+++||||+|+..+++.+++.+.+++.+.
T Consensus 166 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~ 245 (491)
T 4gc0_A 166 FNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMG 245 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcC
Confidence 99999999999988877543 689999999888888888888999999999999999999998887664
Q ss_pred CCcChHHHHHHHHHHhhhhhhchhhhhhhhccccchhHHHHHHHHHHHHHhhchHHHHHHHHhhhcccCCCCCCcchhHH
Q psy15227 216 NKKDVMEEMNSIMDKTQEDLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCIL 295 (515)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 295 (515)
++.+. ++..+.++..++++ +........ ..++.........+.+..+.+....|.+.+.+..+.+.........
T Consensus 246 ~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (491)
T 4gc0_A 246 NTLAT-QAVQEIKHSLDHGR-KTGGRLLMF----GVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTI 319 (491)
T ss_dssp HHHHH-HHHHHHHHHHHHHH-HHTTHHHHS----CCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred CchhH-HHHHHHHHHHHhhh-hhhhHHHHh----cccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHH
Confidence 33311 11111111111111 111111111 2334556666677777788888999999998888776556666777
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHH-hcccchhhhhh
Q psy15227 296 VFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASY-YGIGCLPNILV 374 (515)
Q Consensus 296 ~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~ 374 (515)
..++..+++.++++++.||+|||+.+..+.....++.+.++..... ....+...+...++..++ .+..++.+.+.
T Consensus 320 ~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (491)
T 4gc0_A 320 IVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT----QAPGIVALLSMLFYVAAFAMSWGPVCWVLL 395 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhc----ccchHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 7888999999999999999999999998888888877776654431 223344455555555555 67778888999
Q ss_pred cccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhh------hchhHHHHHHHHHHHHHHHHHHHHhhccccccHHHHH
Q psy15227 375 SELFPINVRCQASSCASVALAFGSFITTKFHILITKS------LGQHVIFFIYSSVHFCSVVFNYFYLMETKQKTLAEIQ 448 (515)
Q Consensus 375 ~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (515)
+|++|++.|+++.|+.+..+++++++++.+.+.+.+. .+....+++++++++++.++.++++||+|+|++||++
T Consensus 396 ~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~ 475 (491)
T 4gc0_A 396 SEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELE 475 (491)
T ss_dssp HHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHG
T ss_pred HHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHH
Confidence 9999999999999999999999999999888776543 3455678899999999999988999999999999987
Q ss_pred HHHh
Q psy15227 449 ESIM 452 (515)
Q Consensus 449 ~~~~ 452 (515)
+..+
T Consensus 476 ~~f~ 479 (491)
T 4gc0_A 476 ALWE 479 (491)
T ss_dssp GGTC
T ss_pred HHhC
Confidence 7665
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-37 Score=311.91 Aligned_cols=395 Identities=12% Similarity=0.051 Sum_probs=300.4
Q ss_pred hhHHHHHHHHHHHHHHhhhhhccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhH
Q psy15227 8 YVYQIIATNTASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKT 87 (515)
Q Consensus 8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~ 87 (515)
++++|......+++.+..+++.....+.+|.+.++ + .+..+.|++.+++.++..++++++|+++||+|||+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~------~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~ 93 (451)
T 1pw4_A 23 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ---G------FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRV 93 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSS---T------TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---h------ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchH
Confidence 45567778888888899999999999999988653 1 36788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHh----h-hhhHHHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhhhHHHHHHHH
Q psy15227 88 TLLLNALLCLPTWFLVVS----N-KIECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILL 162 (515)
Q Consensus 88 ~l~~~~~l~~i~~~~~~~----~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~ 162 (515)
+++++.++.+++.+++++ + +++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+.++|.++++.
T Consensus 94 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~ 173 (451)
T 1pw4_A 94 FLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPL 173 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 9 99999999999999999999999999999999999999999999999999999998
Q ss_pred HhhHH----H-hHHHHHhhhHHHHHHHHHh-hcccCcchhhhhcCChhHHHHHHHhhcCCCcChHHHHHHHHHHhhhhhh
Q psy15227 163 IGNHV----S-YNSLNIALSILPVIFFILF-SFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLK 236 (515)
Q Consensus 163 l~~~l----~-wr~~f~i~~~~~~~~~~~~-~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (515)
++..+ + ||+.|++.+++.++..+.. +++||+|+....+++.+.. ++.+++.+ +++.++...
T Consensus 174 ~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~--~~~~~~~~~ 240 (451)
T 1pw4_A 174 LFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYK-----------NDYPDDYN--EKAEQELTA 240 (451)
T ss_dssp HHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTC-----------CC---------------CC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhc-----------ccccccch--hhhhccccc
Confidence 88664 7 9999999998887766554 4689988653222111100 00000000 000001111
Q ss_pred chhhhhhhhccccchhHHHHHHHHHHHHHhhchHHHHHHHHhhhcc-cCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhh
Q psy15227 237 SKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPK-LDNAYFGPDQCILVFMIIMFLSNFLQAPLMDIL 315 (515)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~ 315 (515)
++...++.++++..+. ..+..+...........+.|.++++ .|.+..+.+.......++.+++.++.+++.||+
T Consensus 241 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~ 315 (451)
T 1pw4_A 241 KQIFMQYVLPNKLLWY-----IAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV 315 (451)
T ss_dssp THHHHHHTSSCHHHHH-----HHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccchHHHHHcCHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112345555443222 2222222333456677888888877 688877888899999999999999999999999
Q ss_pred --CCchhHHHhhHHHH-HHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHH
Q psy15227 316 --GRKPLSCFSAALGC-LLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASV 392 (515)
Q Consensus 316 --grr~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~ 392 (515)
+||+.+..+..+.. ++.+++.. ....+.+...+...+.+.+.....+....+..|.+|++.|+++.|+.+.
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 389 (451)
T 1pw4_A 316 FRGNRGATGVFFMTLVTIATIVYWM------NPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGL 389 (451)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHTTS------CCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHH
T ss_pred hcCCchhHHHHHHHHHHHHHHHHHH------hcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHH
Confidence 99988777666555 44433322 0012344555556666666666667777899999999999999999999
Q ss_pred HHHH-HHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHH
Q psy15227 393 ALAF-GSFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFNYFY 435 (515)
Q Consensus 393 ~~~l-g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 435 (515)
+.++ |..++|.+.|.+.+..|+...+++.+++.+++.++.+..
T Consensus 390 ~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 390 FGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999 999999999999999999988988888888777765443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-35 Score=294.96 Aligned_cols=365 Identities=14% Similarity=0.106 Sum_probs=287.0
Q ss_pred hHHHHHHHHHHHHHHhhhhhccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHH
Q psy15227 9 VYQIIATNTASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTT 88 (515)
Q Consensus 9 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~ 88 (515)
++.+.....+++..+..+++.+...+.+|.+.+ +++ .+..+.|++.+.+.++..++++++|+++||+|||++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g-----~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~ 93 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANNLNDILLPQFQQ---AFT-----LTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAG 93 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HSC-----CCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH---HcC-----CCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHH
Confidence 344566667777788889988899999998866 588 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH---Hhh-hhhHHHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhhhHHHHHHHHHh
Q psy15227 89 LLLNALLCLPTWFLV---VSN-KIECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIG 164 (515)
Q Consensus 89 l~~~~~l~~i~~~~~---~~~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~ 164 (515)
++++.++.+++.+++ .++ +++.++++|++.|++.+...+...+++.|++|+++|++++++.+.+.++|..+++.++
T Consensus 94 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~ 173 (438)
T 3o7q_A 94 IITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFG 173 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999 788 9999999999999999999999999999999999999999999999999999999998
Q ss_pred hHHH------------------------------hHHHHHhhhHHHHHHHHHhhc--ccCcchhhhhcCChhHHHHHHHh
Q psy15227 165 NHVS------------------------------YNSLNIALSILPVIFFILFSF--VPETPHFHAAKNNLKKTEKSLKW 212 (515)
Q Consensus 165 ~~l~------------------------------wr~~f~i~~~~~~~~~~~~~~--~pesp~~~~~~~~~~~~~~~~~~ 212 (515)
..+. ||+.|++.+++.++..+..++ .||+++...++
T Consensus 174 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~------------ 241 (438)
T 3o7q_A 174 QSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSD------------ 241 (438)
T ss_dssp THHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCC------------
T ss_pred HHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccccccc------------
Confidence 7763 999998887777665554443 46654311000
Q ss_pred hcCCCcChHHHHHHHHHHhhhhhhchhhhhhhhccccchhHHHHHHHHHHHHHhhchHHHHHHHHhh-hccc-CCCCCCc
Q psy15227 213 YRGNKKDVMEEMNSIMDKTQEDLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTL-LPKL-DNAYFGP 290 (515)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-g~~~~~~ 290 (515)
+++++.+.+++++++++..+...+..+. ..........+.|.+ +++. |.+..+.
T Consensus 242 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 297 (438)
T 3o7q_A 242 -------------------AKQGSFSASLSRLARIRHWRWAVLAQFC-----YVGAQTACWSYLIRYAVEEIPGMTAGFA 297 (438)
T ss_dssp -------------------SSTTSHHHHHHHHTTCSHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHSTTCCHHHH
T ss_pred -------------------ccccchhhhHHHHHhChHHHHHHHHHHH-----HHHHHHHHHHHHHHHhhhccCCcchhHH
Confidence 0111223455667776544432222211 222345566777877 7665 8887888
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhcccchh
Q psy15227 291 DQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLP 370 (515)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 370 (515)
+.......++.+++.++.++++||++||+.+..+..+..++.+++.. .+..+ ..+...+.+++.....+..
T Consensus 298 ~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~-~~~~~~~~g~~~~~~~~~~ 368 (438)
T 3o7q_A 298 ANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAF--------AGGHV-GLIALTLCSAFMSIQYPTI 368 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--------CCHHH-HHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH--------cCCcH-HHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999998888887777666555 33333 3344456666667777888
Q ss_pred hhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc-hhHHHHHHHHHHHHH
Q psy15227 371 NILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLG-QHVIFFIYSSVHFCS 428 (515)
Q Consensus 371 ~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~ 428 (515)
.++..|.+|++ ++++.++.. ...+|+.++|.+.|.+.|..| ++..+.+.+++.++.
T Consensus 369 ~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 425 (438)
T 3o7q_A 369 FSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVI 425 (438)
T ss_dssp HHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHH
T ss_pred HHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 88888999977 888888777 677999999999999999999 877777655444443
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-31 Score=271.13 Aligned_cols=382 Identities=12% Similarity=0.034 Sum_probs=251.9
Q ss_pred cchhhHHHHHHHHHHHhhhhhhhHhhhhhh-hhhhHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHhhhhhhhcccchh
Q psy15227 53 LNKYQLSWMVSLLDLGNAISPIFAGILVEK-IGRKTTLLLNALLCLPTWFLVVSN-KIECLYIARLFIGISKGVAYTAMP 130 (515)
Q Consensus 53 ~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr-~Grr~~l~~~~~l~~i~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~ 130 (515)
.+..+.+++.+.+.++..++++++|+++|| +|||+++..+.++..++.++++++ +++.++++|+++|++.+...+...
T Consensus 51 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 130 (491)
T 4aps_A 51 ITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVS 130 (491)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHH
Confidence 999999999999999999999999999999 899999999999999999999999 999999999999999999999999
Q ss_pred hhhhccccccc--ccccccccchhhhHHHHHHHHHhhHH----HhHHHHHhhhHHHHHHHHHhhcc-cCcch----hhhh
Q psy15227 131 IFIGEISEHNI--RGALGSIPSGFQMVGTLAILLIGNHV----SYNSLNIALSILPVIFFILFSFV-PETPH----FHAA 199 (515)
Q Consensus 131 ~~i~e~~~~~~--r~~~~~~~~~~~~lG~~~~~~l~~~l----~wr~~f~i~~~~~~~~~~~~~~~-pesp~----~~~~ 199 (515)
+++.|++|+++ |+.+.++++.+.++|..++|.+++.+ +||+.|++.++..++..+..++. |+..+ ....
T Consensus 131 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (491)
T 4aps_A 131 TLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTD 210 (491)
T ss_dssp HHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSC
T ss_pred HHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCC
Confidence 99999999988 77788888999999999998888765 89999999877776665554432 22110 0011
Q ss_pred cCChhHHHHHHHh----------------h-cCCCcChHHHHHHHHHHh-----hhhhhchhhhhhhhccccch-hHHHH
Q psy15227 200 KNNLKKTEKSLKW----------------Y-RGNKKDVMEEMNSIMDKT-----QEDLKSKTGYLELLTNKSNR-RAFTL 256 (515)
Q Consensus 200 ~~~~~~~~~~~~~----------------~-~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-~~~~~ 256 (515)
+.+.++.++..++ . +..+.+............ .....+........+++... .....
T Consensus 211 ~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (491)
T 4aps_A 211 PLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFI 290 (491)
T ss_dssp CCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHH
Confidence 1122222222221 0 111111100000000000 00000000000001111111 11111
Q ss_pred HHHHHHHHHhhchHHHHHHHHhhhcc-cCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHH-----HhhHHHHH
Q psy15227 257 VMAASLFQRLGGITSMITYSSTLLPK-LDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSC-----FSAALGCL 330 (515)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~-----~~~~~~~~ 330 (515)
........ ......+.+.+.++ .+.+....+.......+..+++.++.+++.||++||+... .+..+.++
T Consensus 291 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~ 366 (491)
T 4aps_A 291 AAVLFWAI----EEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGL 366 (491)
T ss_dssp HHHHHHHH----HGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHH
T ss_pred HHHHHHHH----HhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Confidence 11111111 22223344444444 4555567888888899999999999999999999987544 55555555
Q ss_pred HHHHHHHHHHhhC-CCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy15227 331 LTFSTGLFYLYQG-ELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILIT 409 (515)
Q Consensus 331 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~ 409 (515)
+..++........ +...+.+.......+.+++.....+....+..|.+|++.|+++.|+.+...++|..++|.+.+.+.
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~ 446 (491)
T 4aps_A 367 SFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYN 446 (491)
T ss_dssp HHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGG
T ss_pred HHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555444322211 112244455566666777777777888899999999999999999999999999999999998876
Q ss_pred hhhchhHHHHHHHHHHHHHHHHHHHHhhcc
Q psy15227 410 KSLGQHVIFFIYSSVHFCSVVFNYFYLMET 439 (515)
Q Consensus 410 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (515)
+. ++...+...+++++++.++.++..++.
T Consensus 447 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (491)
T 4aps_A 447 AK-SEVAYFSYFGLGSVVLGIVLVFLSKRI 475 (491)
T ss_dssp GS-STTHHHHHTHHHHHHHHHHHHHC----
T ss_pred cc-cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 64 566678888888777777665554443
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.1e-33 Score=270.80 Aligned_cols=351 Identities=14% Similarity=0.111 Sum_probs=269.4
Q ss_pred HHHHHHHHhhhhhccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHHHHHHHH
Q psy15227 16 NTASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALL 95 (515)
Q Consensus 16 ~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~~~~~l 95 (515)
..+++..+..+++.+...+.+|.+.+ ++| .++.+.+++.+.+.++..++++++|+++||+|||+++..+.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g-----~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~ 74 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMAR---DLN-----VREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSI 74 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---TSS-----STTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHH---HcC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHH
Confidence 45566677788888888899998866 488 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh-hhhHHHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhhhHHHHHHHHHhhHH----HhH
Q psy15227 96 CLPTWFLVVSN-KIECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHV----SYN 170 (515)
Q Consensus 96 ~~i~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~l----~wr 170 (515)
..++.++..++ +++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.++..+ +||
T Consensus 75 ~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 154 (375)
T 2gfp_A 75 FMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWR 154 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHH
Confidence 99999999999 9999999999999999999999999999999999999999999999999999999998765 899
Q ss_pred HHHHhhhHHHHHHHHH-hhcccCcchhhhhcCChhHHHHHHHhhcCCCcChHHHHHHHHHHhhhhhhchhhhhhhhcccc
Q psy15227 171 SLNIALSILPVIFFIL-FSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGYLELLTNKS 249 (515)
Q Consensus 171 ~~f~i~~~~~~~~~~~-~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (515)
+.|++.+++.++..+. .+++||+++...+ +++.+.++++.+++|.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~~~~~~ 200 (375)
T 2gfp_A 155 ACYLFLLVLCAGVTFSMARWMPETRPVDAP----------------------------------RTRLLTSYKTLFGNSG 200 (375)
T ss_dssp HHHHHHHHHHHHHHCCCCCSSCCCSTTTCC----------------------------------CCCTTTCSTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCcccCCCCcc----------------------------------cccHHHHHHHHhcCcc
Confidence 9999998888777664 3457887643100 0111223445555443
Q ss_pred chhHHHHHHHHHHHHHhhchHHHHHHHHhhhcc-cCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHH-
Q psy15227 250 NRRAFTLVMAASLFQRLGGITSMITYSSTLLPK-LDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAAL- 327 (515)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~- 327 (515)
.+.. .+..+...........+.|.++++ .|.++.+.+.......++.+++.++.+++.||.+++. ..+...
T Consensus 201 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~ 273 (375)
T 2gfp_A 201 FNCY-----LLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICC 273 (375)
T ss_dssp HHHH-----HHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHH
T ss_pred hHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 3322 122222223345667777888776 6777778888888899999999999999999988732 222222
Q ss_pred HHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy15227 328 GCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHIL 407 (515)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~ 407 (515)
...+...+...... .++.+...+...+.+++.+...+...++..|.+| ++|+++.|+.+...++|..++|.+.|.
T Consensus 274 ~~~~~~~~~~~~~~----~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~ 348 (375)
T 2gfp_A 274 LLAGLLMWIPDWFG----VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAM 348 (375)
T ss_dssp HHTSSSSSHHHHHH----HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTH
T ss_pred HHHHHHHHHHhhhc----cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222111111100 1123444556666777777778888899999998 889999999999999999999999999
Q ss_pred HHhhhchhHHHHH
Q psy15227 408 ITKSLGQHVIFFI 420 (515)
Q Consensus 408 l~~~~g~~~~~~~ 420 (515)
+.+..++...+.+
T Consensus 349 l~~~~~~~~~~~~ 361 (375)
T 2gfp_A 349 LPQTGQGSLGLLM 361 (375)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HhcCCcccHHHHH
Confidence 9887777655544
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.7e-30 Score=255.69 Aligned_cols=362 Identities=12% Similarity=0.022 Sum_probs=231.4
Q ss_pred chhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHH---Hhh-
Q psy15227 31 WPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALLCLPTWFLV---VSN- 106 (515)
Q Consensus 31 ~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~---~~~- 106 (515)
...+.+|...++ ++| .|+.+.|++.+.+.++..++++++|+++||+|||++++++..+.+++.... .+.
T Consensus 25 ~~~~~~~~~l~~--~~g-----~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~ 97 (417)
T 2cfq_A 25 AYFPFFPIWLHD--INH-----ISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGP 97 (417)
T ss_dssp HHTTTHHHHHHT--TTC-----CCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHH
T ss_pred HHHHHHHHHHHH--HhC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555543221 477 999999999999999999999999999999999999999887765533211 222
Q ss_pred hh-hHHHHHHHHhhhhhhhcccchhhhhhccccc--ccccccccccchhhhHHHHHHHHHhhHH---HhHHHHHhhhHHH
Q psy15227 107 KI-ECLYIARLFIGISKGVAYTAMPIFIGEISEH--NIRGALGSIPSGFQMVGTLAILLIGNHV---SYNSLNIALSILP 180 (515)
Q Consensus 107 ~~-~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~--~~r~~~~~~~~~~~~lG~~~~~~l~~~l---~wr~~f~i~~~~~ 180 (515)
.. ..+...+++.|++.+...+.....+.++.++ ++|+...+....+..+|..++|.+++.+ +||+.|++.++..
T Consensus 98 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~~~~ 177 (417)
T 2cfq_A 98 LLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCA 177 (417)
T ss_dssp HHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHH
Confidence 11 2245567777777766655555556666544 3457667777777788888888877665 7999999888776
Q ss_pred HHHHHHhhccc-CcchhhhhcCChhHHHHHHHhhcCCCcChHHHHHHHHHHhhhhhhchhhhhhhhccccchhHHHHHHH
Q psy15227 181 VIFFILFSFVP-ETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGYLELLTNKSNRRAFTLVMA 259 (515)
Q Consensus 181 ~~~~~~~~~~p-esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (515)
++..+..++.| |+|+. .++++.++ .++++....+++++++++..+......+.
T Consensus 178 ~~~~~~~~~~~~~~~~~-~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (417)
T 2cfq_A 178 LILAVLLFFAKTDAPSS-ATVANAVG-------------------------ANHSAFSLKLALELFRQPKLWFLSLYVIG 231 (417)
T ss_dssp TTHHHHSCSSCCCCSCS-SCSSSSSS-------------------------SCCCCCCHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcccccc-cccccccc-------------------------cccccccHHHHHHHhcCCchhhHHHHHHH
Confidence 65555544444 43321 00000000 00000111234456665544332221111
Q ss_pred HHHHHHhhchHHHHHHHHhhhccc-C---CCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHH
Q psy15227 260 ASLFQRLGGITSMITYSSTLLPKL-D---NAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFST 335 (515)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~-g---~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~ 335 (515)
.. ..+.....+.|.++.+. + .+....+.......+..+++.++.++++||+|||+.+..+..+.++..+.+
T Consensus 232 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~ 306 (417)
T 2cfq_A 232 VS-----CTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGS 306 (417)
T ss_dssp HH-----HHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HH-----HHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Confidence 11 11222223344444332 1 122233555666677888899999999999999998887777766655444
Q ss_pred HHHHHhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHH-HHHHHHHHHHHHHHHHHHHhhhch
Q psy15227 336 GLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCA-SVALAFGSFITTKFHILITKSLGQ 414 (515)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~-~~~~~lg~~~~~~~~g~l~~~~g~ 414 (515)
.. .++.+...+...+.+.+.....+....+.+|.+|++.|+++.+.. +...++|+.++|.+.|.+.+..|+
T Consensus 307 ~~--------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~ 378 (417)
T 2cfq_A 307 SF--------ATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGF 378 (417)
T ss_dssp TT--------CCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHH
T ss_pred HH--------hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCc
Confidence 33 233344444444444444444455568999999999999999994 888899999999999999998888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhc
Q psy15227 415 HVIFFIYSSVHFCSVVFNYFYLME 438 (515)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~ 438 (515)
...|.+.+++++++.++.+...+|
T Consensus 379 ~~~f~~~~~~~l~~~~~~~~~~~~ 402 (417)
T 2cfq_A 379 QGAYLVLGLVALGFTLISVFTLSG 402 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcC
Confidence 888888888888777665444443
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-26 Score=237.81 Aligned_cols=388 Identities=10% Similarity=0.056 Sum_probs=220.5
Q ss_pred cchhhHHHHHHHHHHHhhhhhhhHhhhhhhh-hhhHHHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHhhhhhhhcccch
Q psy15227 53 LNKYQLSWMVSLLDLGNAISPIFAGILVEKI-GRKTTLLLNALLCLPTWFLVVSN--KIECLYIARLFIGISKGVAYTAM 129 (515)
Q Consensus 53 ~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~-Grr~~l~~~~~l~~i~~~~~~~~--~~~~l~~~r~l~G~~~g~~~~~~ 129 (515)
.+..+.+++.+.+.++..++++++|+++||+ |||+++.++.++..++.++++++ +++.+++.|++.|++.+...+..
T Consensus 51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 130 (524)
T 2xut_A 51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLV 130 (524)
T ss_dssp TTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhH
Confidence 7889999999999999999999999999999 99999999999999999999887 79999999999999999999999
Q ss_pred hhhhhcccccccccccccc---cchhhhHHHHHHHHHhhHH----HhHHHHHhhhHHHHHHHHHhhcc-cCcchhhhhcC
Q psy15227 130 PIFIGEISEHNIRGALGSI---PSGFQMVGTLAILLIGNHV----SYNSLNIALSILPVIFFILFSFV-PETPHFHAAKN 201 (515)
Q Consensus 130 ~~~i~e~~~~~~r~~~~~~---~~~~~~lG~~~~~~l~~~l----~wr~~f~i~~~~~~~~~~~~~~~-pesp~~~~~~~ 201 (515)
.+++.|++|+++|+++.+. .+.+.++|..++|.+++.+ +||+.|++.+++.++..+..++. |+.++...+++
T Consensus 131 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (524)
T 2xut_A 131 SSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPK 210 (524)
T ss_dssp HHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC----
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCc
Confidence 9999999999999877666 8888999999999887765 89999999888877665554432 22111000000
Q ss_pred ChhHHHHHHHh-hcCCCcChHH--HHHHHHHH------------------------hhhhhhchhhhhhh------hc--
Q psy15227 202 NLKKTEKSLKW-YRGNKKDVME--EMNSIMDK------------------------TQEDLKSKTGYLEL------LT-- 246 (515)
Q Consensus 202 ~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~------------------------~~~~~~~~~~~~~~------~~-- 246 (515)
+..+..+.... .+....+.+. ...+.... ...+++++.+++++ .+
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (524)
T 2xut_A 211 DPHGFLPVIRSALLTKVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSHPDA 290 (524)
T ss_dssp ----------------CTTHHHHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHHHHTGGGTHHHHSCCSCCSS
T ss_pred cchhHHHHHHHHHhhhhcccCccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhcccccchhhHHhhhhccccHh
Confidence 00011010000 0000000000 00000000 00000111112100 00
Q ss_pred cccchhHHHHH--HHHHHHHHhhchHHHHHHHHhhhcccCCCC-CCcchhHHHHHHHHHHHHHHHHHHH----hhhCCc-
Q psy15227 247 NKSNRRAFTLV--MAASLFQRLGGITSMITYSSTLLPKLDNAY-FGPDQCILVFMIIMFLSNFLQAPLM----DILGRK- 318 (515)
Q Consensus 247 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~g~l~----d~~grr- 318 (515)
....+++.... ...................+.+..+.+.+. ...+.......+..+++..+.+++. ||.++|
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (524)
T 2xut_A 291 AVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQWFEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKL 370 (524)
T ss_dssp SSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCSSSCHHHHHTTSGGGHHHHGGGTTTC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCeeecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCC
Confidence 00111111111 111100000001111111122222222211 1233333333444555555555543 443322
Q ss_pred ---hhHHHhhHHHHHHHHHHHHHHHhhC-CCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHH
Q psy15227 319 ---PLSCFSAALGCLLTFSTGLFYLYQG-ELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVAL 394 (515)
Q Consensus 319 ---~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~ 394 (515)
+.+..+..+.+++.+++........ ....+.+...+...+.+++.....+...++..|..|++.||+++|+.+...
T Consensus 371 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~ 450 (524)
T 2xut_A 371 TALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSV 450 (524)
T ss_dssp CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHH
Confidence 3444555555555444332110000 001234455556667777777777888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhc--h---------hHHHHHHHHHHHHHHHHHHHHhhccc
Q psy15227 395 AFGSFITTKFHILITKSLG--Q---------HVIFFIYSSVHFCSVVFNYFYLMETK 440 (515)
Q Consensus 395 ~lg~~~~~~~~g~l~~~~g--~---------~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (515)
++|+.++|.+.+.+.+..+ | ...+++.+++++++.++.++..++.+
T Consensus 451 ~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (524)
T 2xut_A 451 TVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIVFALYARSYQ 507 (524)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999998877431 1 22366667766666666544444443
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=3e-14 Score=142.52 Aligned_cols=181 Identities=10% Similarity=-0.041 Sum_probs=145.7
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHH
Q psy15227 255 TLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFS 334 (515)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~ 334 (515)
+.......+.............|.+.++. .+..+.+...+...++..++.++.|+++||+|||+.+..+..+.+++.++
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~ 108 (451)
T 1pw4_A 30 FLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLF 108 (451)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence 33333333333333455667788888888 88899999999999999999999999999999999999999988888877
Q ss_pred HHHHHHhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc-
Q psy15227 335 TGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLG- 413 (515)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~g- 413 (515)
+.+.... .++.+..++..++.+++.+...+...+++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..|
T Consensus 109 ~~~~~~~----~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~ 184 (451)
T 1pw4_A 109 MGFVPWA----TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFND 184 (451)
T ss_dssp HHHCHHH----HSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCC
T ss_pred HHhhhhc----cccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 7652110 13456666777778887777788888999999999999999999999999999999999999999898
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhccc
Q psy15227 414 QHVIFFIYSSVHFCSVVFNYFYLMETK 440 (515)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (515)
|+..+++.+++.++..++.++..||+.
T Consensus 185 w~~~f~~~~~~~~~~~~~~~~~~~~~~ 211 (451)
T 1pw4_A 185 WHAALYMPAFCAILVALFAFAMMRDTP 211 (451)
T ss_dssp STTCTHHHHHHHHHHHHHHHHHCCCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCH
Confidence 999999998888877776666666543
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.4e-12 Score=131.85 Aligned_cols=161 Identities=17% Similarity=0.132 Sum_probs=133.3
Q ss_pred hHHHHHHHHhhhcc------cCCCCCCcchhHHHHHHHHHHHHHHHHHHHhh-hCCchhHHHhhHHHHHHHHHHHHHHHh
Q psy15227 269 ITSMITYSSTLLPK------LDNAYFGPDQCILVFMIIMFLSNFLQAPLMDI-LGRKPLSCFSAALGCLLTFSTGLFYLY 341 (515)
Q Consensus 269 ~~~~~~~~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~~~ 341 (515)
++....+.+.++.+ .|.+..+.+...+...++..++.++.|+++|| +|||+.+..+..+.+++.+++..
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~---- 104 (491)
T 4aps_A 29 YYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLAL---- 104 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHS----
T ss_pred HHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHH----
Confidence 34444555555544 78888889999999999999999999999999 89999999999988888877765
Q ss_pred hCCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchh--hhhhhhHHHHHHHHHHHHHHHHHHHHHhhhchhHHHH
Q psy15227 342 QGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINV--RCQASSCASVALAFGSFITTKFHILITKSLGQHVIFF 419 (515)
Q Consensus 342 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~--r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~ 419 (515)
.++.+...+..++.+++.+...+...++++|.+|++. |+.+.++.+....+|..++|.+.+.+.+..||+..|+
T Consensus 105 ----~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~ 180 (491)
T 4aps_A 105 ----PFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFS 180 (491)
T ss_dssp ----CCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred ----hhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 5666777777788888877778888899999999988 7778888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhh
Q psy15227 420 IYSSVHFCSVVFNYFYLM 437 (515)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~ 437 (515)
+.++..+++.+...+..+
T Consensus 181 ~~~~~~~~~~~~~~~~~~ 198 (491)
T 4aps_A 181 LAAIGMFIGLLVYYFGGK 198 (491)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCc
Confidence 887777766665544433
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=8e-13 Score=131.54 Aligned_cols=160 Identities=13% Similarity=-0.003 Sum_probs=133.9
Q ss_pred chHHHHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCC
Q psy15227 268 GITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPN 347 (515)
Q Consensus 268 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (515)
.........|.+.++.|.+..+.+...+...++..++.++.|+++||+|||+.+..+..+.+++.++...... .+
T Consensus 41 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~-----~~ 115 (438)
T 3o7q_A 41 ANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE-----IM 115 (438)
T ss_dssp HHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH-----TT
T ss_pred HHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccc-----cc
Confidence 3456667788888889999889999999999999999999999999999999999999999888888732222 56
Q ss_pred CccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHH-hhhc-------------
Q psy15227 348 FQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILIT-KSLG------------- 413 (515)
Q Consensus 348 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~-~~~g------------- 413 (515)
+.+..++..++.+++.+...+...+++.|.+|+++|+.+.++.+....+|..++|.+.+.+. +..+
T Consensus 116 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~ 195 (438)
T 3o7q_A 116 NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPE 195 (438)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHH
T ss_pred cHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcc
Confidence 66777777888888887778888899999999999999999999999999999999999988 5444
Q ss_pred ------------hhHHHHHHHHHHHHHHHHH
Q psy15227 414 ------------QHVIFFIYSSVHFCSVVFN 432 (515)
Q Consensus 414 ------------~~~~~~~~~~~~~~~~~~~ 432 (515)
|+..+++.+++..+..++.
T Consensus 196 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 226 (438)
T 3o7q_A 196 QLSAYKHSLVLSVQTPYMIIVAIVLLVALLI 226 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 7778877776666555543
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.9e-13 Score=133.16 Aligned_cols=163 Identities=11% Similarity=0.096 Sum_probs=136.2
Q ss_pred chHHHHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCC
Q psy15227 268 GITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPN 347 (515)
Q Consensus 268 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (515)
.........|.+.++.|.+..+.+.......++..++.++.|+++||+|||+.+..+..+..++.+.... .+
T Consensus 15 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--------~~ 86 (375)
T 2gfp_A 15 AQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVT--------TS 86 (375)
T ss_dssp HHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHH--------HH
T ss_pred HHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHH--------hc
Confidence 3455566677788888998888999999999999999999999999999999999999888888877766 33
Q ss_pred CccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHH
Q psy15227 348 FQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSLGQHVIFFIYSSVHFC 427 (515)
Q Consensus 348 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~ 427 (515)
+.+...+...+.+.+.+...+...+++.|.+|+++|+++.+..+....+|..++|.+.+.+.+..+|+..+.+.++..++
T Consensus 87 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 166 (375)
T 2gfp_A 87 SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAG 166 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45566666677777777777888899999999999999999999999999999999999999988999888888877776
Q ss_pred HHHHHHHHhhc
Q psy15227 428 SVVFNYFYLME 438 (515)
Q Consensus 428 ~~~~~~~~~~~ 438 (515)
..+...+..||
T Consensus 167 ~~~~~~~~~~~ 177 (375)
T 2gfp_A 167 VTFSMARWMPE 177 (375)
T ss_dssp HHCCCCCSSCC
T ss_pred HHHHHHHHCcc
Confidence 65544444444
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.38 E-value=6.8e-12 Score=127.98 Aligned_cols=155 Identities=19% Similarity=0.179 Sum_probs=128.3
Q ss_pred HHHHHHHHhhh-cccC------CCCCCcchhHHHHHHHHHHHHHHHHHHHhhh-CCchhHHHhhHHHHHHHHHHHHHHHh
Q psy15227 270 TSMITYSSTLL-PKLD------NAYFGPDQCILVFMIIMFLSNFLQAPLMDIL-GRKPLSCFSAALGCLLTFSTGLFYLY 341 (515)
Q Consensus 270 ~~~~~~~~~~~-~~~g------~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~~~ 341 (515)
+....+.+.++ ++.| .+..+.+.......++..++.++.|+++||+ |||+.+..+.++.+++.+++..
T Consensus 29 ~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~---- 104 (524)
T 2xut_A 29 YGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAI---- 104 (524)
T ss_dssp HHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH----
Confidence 34445555554 4567 8888999999999999999999999999999 9999999988888888877766
Q ss_pred hCCCCC-CccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhH---HHHHHHHHHHHHHHHHHHHHhhhchhHH
Q psy15227 342 QGELPN-FQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSC---ASVALAFGSFITTKFHILITKSLGQHVI 417 (515)
Q Consensus 342 ~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~---~~~~~~lg~~~~~~~~g~l~~~~g~~~~ 417 (515)
.. +.+..++..++.+++.+...+...+++.|.+|++.|+++.+. .+...++|..++|.+.+.+.+..||+..
T Consensus 105 ----~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~ 180 (524)
T 2xut_A 105 ----FEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVA 180 (524)
T ss_dssp ----TSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHH
T ss_pred ----hcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHH
Confidence 44 566666677777777777788888999999999999876666 8899999999999999999998999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy15227 418 FFIYSSVHFCSVVFN 432 (515)
Q Consensus 418 ~~~~~~~~~~~~~~~ 432 (515)
|.+.+++.+++.+..
T Consensus 181 f~~~~~~~~~~~~~~ 195 (524)
T 2xut_A 181 FGIPGVLMFVATVFF 195 (524)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 988887776665554
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=3e-11 Score=119.40 Aligned_cols=143 Identities=12% Similarity=0.137 Sum_probs=117.7
Q ss_pred cchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHhhhhhhhcccchhh
Q psy15227 53 LNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALLCLPTWFLVVSN-KIECLYIARLFIGISKGVAYTAMPI 131 (515)
Q Consensus 53 ~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~ 131 (515)
.+..+.++..+...++..++.++.|+++||+|||+++..+.++.+++.++.++. +.+.+++..++.|++.+...+....
T Consensus 256 ~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 335 (417)
T 2cfq_A 256 QGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFK 335 (417)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667888888889999999999999999999999999988888887777777 8888888888888887777777788
Q ss_pred hhhcccccccccccccc-cchhhhHHHHHHHHHhhHH----HhHHHHHhhhHHHHHHHHHhh-cccCcch
Q psy15227 132 FIGEISEHNIRGALGSI-PSGFQMVGTLAILLIGNHV----SYNSLNIALSILPVIFFILFS-FVPETPH 195 (515)
Q Consensus 132 ~i~e~~~~~~r~~~~~~-~~~~~~lG~~~~~~l~~~l----~wr~~f~i~~~~~~~~~~~~~-~~pesp~ 195 (515)
++.|.+|++.|+.+.++ ++....+|..++|.+++.+ +++..|.+.+++.++..+..+ ..||.++
T Consensus 336 ~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 336 YITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp HHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 99999999999999888 4777888888888887654 788888888888777766544 4666543
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=6e-10 Score=112.46 Aligned_cols=141 Identities=16% Similarity=0.107 Sum_probs=102.3
Q ss_pred cchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhh-----hhhHHHHHH--HHhhhhhhhc
Q psy15227 53 LNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALLCLPTWFLVVSN-----KIECLYIAR--LFIGISKGVA 125 (515)
Q Consensus 53 ~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~-----~~~~l~~~r--~l~G~~~g~~ 125 (515)
.+..+.........+...++.++.+++.||+|||+.++.+.....++.+..+.. +.+..++.- +..+++. ..
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 387 (491)
T 4gc0_A 309 ASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAM-SW 387 (491)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHT-TT
T ss_pred CCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHh-HH
Confidence 555666677777888899999999999999999999999988888777666543 112222222 2223322 23
Q ss_pred ccchhhhhhcccccccccccccccchhhhHHHHHHHHHhhHH----------HhHHHHHhhhHHHHHHHHHh-hcccCcc
Q psy15227 126 YTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHV----------SYNSLNIALSILPVIFFILF-SFVPETP 194 (515)
Q Consensus 126 ~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~~l~~~l----------~wr~~f~i~~~~~~~~~~~~-~~~pesp 194 (515)
.+....+.+|.+|.+.|+.++++......+|..+++.+...+ ++.+.|++.++++++..+.. +++|||.
T Consensus 388 ~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETk 467 (491)
T 4gc0_A 388 GPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETK 467 (491)
T ss_dssp THHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCT
T ss_pred HHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCC
Confidence 466778999999999999999999888888888776654332 45567788888877776655 4689974
|
| >3rko_A NADH-quinone oxidoreductase subunit A; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.34 E-value=7.1e-07 Score=71.34 Aligned_cols=47 Identities=36% Similarity=0.754 Sum_probs=27.9
Q ss_pred ccccccccccccCCCCCCcccchHHHHHHHHHHHHHHHHHHhHhcch
Q psy15227 459 RREKTSPFECGFDPISKPRISYSLHFFSIALIFLIFDIEITLIFPSP 505 (515)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (515)
+++|.+|+|||.+|.++.|.+|+.+||+.+++|++||+|+.+.+|-.
T Consensus 43 ~~eK~spyECGfdp~~~ar~~FsirFfLiAilFlIFDvEi~~L~Pwa 89 (147)
T 3rko_A 43 ARSKNVPFESGIDSVGSARLRLSAKFYLVAMFFVIFDVEALYLFAWS 89 (147)
T ss_dssp CC-----------------CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccCCCcccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999999999999999999999999999999854
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 515 | ||||
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 3e-15 | |
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 3e-07 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 75.9 bits (185), Expect = 3e-15
Identities = 51/403 (12%), Positives = 117/403 (29%), Gaps = 20/403 (4%)
Query: 53 LNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALLCLPTWFL-----VVSNK 107
++ L + +S + + S G + ++ + L +L ++
Sbjct: 56 FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSS 115
Query: 108 IECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAILLIGNHV 167
I +++ G +G+ + + RG + S+ + VG L+
Sbjct: 116 IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG 175
Query: 168 SYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSI 227
+ ++ F + + A ++ T +S + +
Sbjct: 176 MAWFNDWHAALYMPAFCAILVAL-------FAFAMMRDTPQSCGLPPIEEYKNDYPDDYN 228
Query: 228 MDKTQEDLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAY 287
QE + +L N + + A++F L + + L A
Sbjct: 229 EKAEQELTAKQIFMQYVLPN----KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFAL 284
Query: 288 FGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPN 347
++ L + D + R L+T +T ++++ P
Sbjct: 285 DKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNP- 343
Query: 348 FQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASS-CASVALAFGSFITTKFHI 406
+ I ++ YG L + EL P A+ GS +
Sbjct: 344 --TVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVG 401
Query: 407 LITKSLGQHVIFFIYSSVHFCSVVFNYFYLMETKQKTLAEIQE 449
G F + +V+ ++ K++ +QE
Sbjct: 402 YTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQE 444
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 50.2 bits (118), Expect = 3e-07
Identities = 35/408 (8%), Positives = 95/408 (23%), Gaps = 47/408 (11%)
Query: 53 LNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALLCLPTWFLVVSNKIECLY 112
++K + + + L + + G+L +K+G + LL L + L
Sbjct: 40 ISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLL 99
Query: 113 IARLFIGISKGVAYTAMPIFIG-----------EISEHNIRGALGSIPSGFQMVGTLAIL 161
+ +G G Y G + G +G +
Sbjct: 100 QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVG 159
Query: 162 LIGNHVSYNSLNIALSILPVIFFILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVM 221
++ + + ++ +LF + P N + + +
Sbjct: 160 IMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALEL--- 216
Query: 222 EEMNSIMDKTQEDLKSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLP 281
+ +L + + ++
Sbjct: 217 ------------------------FRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFA 252
Query: 282 KLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLY 341
+ + ++ F +++ +G K + + + +
Sbjct: 253 TGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA--- 309
Query: 342 QGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASS-CASVALAFGSFI 400
I L+ + ++ F + C
Sbjct: 310 -----TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIF 364
Query: 401 TTKFHILITKSLGQHVIFFIYSSVHFCSVVFNYFYLMETKQKTLAEIQ 448
+ + +S+G + + V + + F L +L Q
Sbjct: 365 MSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLLRRQ 412
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 515 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 100.0 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.97 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.53 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.31 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7.4e-38 Score=311.80 Aligned_cols=401 Identities=12% Similarity=0.057 Sum_probs=290.3
Q ss_pred chhHHHHHHHHHHHHHHhhhhhccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhh
Q psy15227 7 SYVYQIIATNTASISLLIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRK 86 (515)
Q Consensus 7 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr 86 (515)
.++++|.++..++++.+...++....+.+.|.+.+ +| +|.+|+|++.+++.+++.++++++|+++||+|||
T Consensus 19 ~~~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~~----~g-----~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r 89 (447)
T d1pw4a_ 19 YRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVE----QG-----FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPR 89 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTS----ST-----TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hC-----cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch
Confidence 45567888888888888888888888888887743 67 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhh-----hhhHHHHHHHHhhhhhhhcccchhhhhhcccccccccccccccchhhhHHHHHHH
Q psy15227 87 TTLLLNALLCLPTWFLVVSN-----KIECLYIARLFIGISKGVAYTAMPIFIGEISEHNIRGALGSIPSGFQMVGTLAIL 161 (515)
Q Consensus 87 ~~l~~~~~l~~i~~~~~~~~-----~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~lG~~~~~ 161 (515)
+++.++.++.+++.++++++ +++.+++.|++.|++.|...+...+++.|++|+++|++++++.+.+..+|..+++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~ 169 (447)
T d1pw4a_ 90 VFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPP 169 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHH
T ss_pred HHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhh
Confidence 99999999999999988764 6789999999999999999999999999999999999999999999999998888
Q ss_pred HHhhHH-----HhHHHHHhhhHHHHHHHHHhh-cccCcchhhhhcCChhHHHHHHHhhcCCCcChHHHHHHHHHHhhhhh
Q psy15227 162 LIGNHV-----SYNSLNIALSILPVIFFILFS-FVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDL 235 (515)
Q Consensus 162 ~l~~~l-----~wr~~f~i~~~~~~~~~~~~~-~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (515)
.++... +||+.|++.+++.++..+..+ +.+|+|+.......++.. ++..++. .++.+++..
T Consensus 170 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~--~~~~~~~~~ 236 (447)
T d1pw4a_ 170 LLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYK-----------NDYPDDY--NEKAEQELT 236 (447)
T ss_dssp HHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTC-----------CC---------------C
T ss_pred hhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhh-----------hhcccch--hhccccccc
Confidence 776543 799999998888877666555 467766543222111110 0000000 000111111
Q ss_pred hchhhhhhhhccccchhHHHHHHHHHHHHHhhchHHHHHHHHhhhcc-cCCCCCCcchhHHHHHHHHHHHHHHHHHHHhh
Q psy15227 236 KSKTGYLELLTNKSNRRAFTLVMAASLFQRLGGITSMITYSSTLLPK-LDNAYFGPDQCILVFMIIMFLSNFLQAPLMDI 314 (515)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 314 (515)
.++...++.++++..+ ......+...........+.+.++.+ .+.+..+.+.......+..+++.++.|++.||
T Consensus 237 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 311 (447)
T d1pw4a_ 237 AKQIFMQYVLPNKLLW-----YIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK 311 (447)
T ss_dssp CTHHHHHHTSSCHHHH-----HHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHcCchHH-----HHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhh
Confidence 2223334444443222 22222222223345566677777665 57777788888899999999999999999999
Q ss_pred hCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHH
Q psy15227 315 LGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVAL 394 (515)
Q Consensus 315 ~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~ 394 (515)
.+|++..................... ....+.+...+..++.+++..+..+....+..|.+|++.|+++.|+.+.+.
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~ 388 (447)
T d1pw4a_ 312 VFRGNRGATGVFFMTLVTIATIVYWM---NPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFG 388 (447)
T ss_dssp TSTTCHHHHHHHHHHHHHHHHHHTTS---CCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHH
T ss_pred ccccccccccchhHHHHHHHHHHHHh---cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 99876544444333333332222111 112334455555556665556666777789999999999999999999988
Q ss_pred HHH-HHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHhh
Q psy15227 395 AFG-SFITTKFHILITKSLGQHVIFFIYSSVHFCSVVFNYFYLM 437 (515)
Q Consensus 395 ~lg-~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 437 (515)
+++ ..++|.+.|.+.|+.|++..+.+.+++++++.++.....+
T Consensus 389 ~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 432 (447)
T d1pw4a_ 389 YLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMI 432 (447)
T ss_dssp HHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 875 5668899999999999998888888877777766655443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=1.8e-29 Score=247.15 Aligned_cols=382 Identities=11% Similarity=-0.004 Sum_probs=256.1
Q ss_pred HhhhhhccchhhhhhcccCCCCcccccccccchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHH
Q psy15227 23 LIAGCWIAWPSVMIKRLTDENPDLENIGIRLNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALLCLPTWFL 102 (515)
Q Consensus 23 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~ 102 (515)
+...+..+...+.+|....+ ++| +|++++|++.+++.++..++++++|+++||+|||++++++..+..++..+
T Consensus 17 f~~~~~~~~~~~~l~~~l~~--~~g-----~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~ 89 (417)
T d1pv7a_ 17 FFYFFIMGAYFPFFPIWLHD--INH-----ISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAP 89 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHC-----CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH--ccC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence 33445555666777753221 478 99999999999999999999999999999999999999999999888888
Q ss_pred HHhh-hhh----HHHHHHHHhhhhhhhcccchhhhhhcccccc--cccccccccchhhhHHHHHHHHHhhHH---HhHHH
Q psy15227 103 VVSN-KIE----CLYIARLFIGISKGVAYTAMPIFIGEISEHN--IRGALGSIPSGFQMVGTLAILLIGNHV---SYNSL 172 (515)
Q Consensus 103 ~~~~-~~~----~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~--~r~~~~~~~~~~~~lG~~~~~~l~~~l---~wr~~ 172 (515)
..+. +.. ..++.+.+.+.+.+...........+..+++ ++.+..+........|..+++.++..+ +|+..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 169 (417)
T d1pv7a_ 90 FFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFV 169 (417)
T ss_dssp HHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhcccccccccccccccccccccc
Confidence 8776 433 3455666666666666555555555544433 345566667777778888888877665 55555
Q ss_pred HHhhhHHHHHHH-HHhhcccCcchhhhhcCChhHHHHHHHhhcCCCcChHHHHHHHHHHhhhhhhchhhhhhhhccccch
Q psy15227 173 NIALSILPVIFF-ILFSFVPETPHFHAAKNNLKKTEKSLKWYRGNKKDVMEEMNSIMDKTQEDLKSKTGYLELLTNKSNR 251 (515)
Q Consensus 173 f~i~~~~~~~~~-~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (515)
+........+.. +..+..+|+|+....++ + ++.++++.......+..+.+..+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-----------------------~~~~~~~~~~~~~~~~~~~~~~~ 223 (417)
T d1pv7a_ 170 FWLGSGCALILAVLLFFAKTDAPSSATVAN---A-----------------------VGANHSAFSLKLALELFRQPKLW 223 (417)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCSCSSSCSSH---H-----------------------HHSCCCCCCHHHHHHHTTSSHHH
T ss_pred ccchhhHHHHHHHHHHHHhcccccchhhhh---h-----------------------hhhhccccccccccccccccccc
Confidence 555555554444 44445677654211110 0 00011111112222333322222
Q ss_pred hHHHHHHHHHHHHHhhchHHHHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHH
Q psy15227 252 RAFTLVMAASLFQRLGGITSMITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLL 331 (515)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~ 331 (515)
. .....................+.+....+.+.+....+.......++..++..+.+++.||.++|+.+..+..+.+++
T Consensus 224 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~ 302 (417)
T d1pv7a_ 224 F-LSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVR 302 (417)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred c-hhhhhHHHHHHHHhhhccccccccccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHh
Confidence 2 222222222211111122222222222333333345556667777888999999999999999999999988888887
Q ss_pred HHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHH-HHHHHHHHHHHHHHHHHHHh
Q psy15227 332 TFSTGLFYLYQGELPNFQYIPYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCA-SVALAFGSFITTKFHILITK 410 (515)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~-~~~~~lg~~~~~~~~g~l~~ 410 (515)
.+.+.. .++.+...+...+.+++.+...+...+++.|.+|++.|+++.|+. +....+|..++|.+.|.+.|
T Consensus 303 ~~~~~~--------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~ 374 (417)
T d1pv7a_ 303 IIGSSF--------ATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYE 374 (417)
T ss_dssp HHHHHT--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHH
T ss_pred hhcccc--------ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777665 566677777777778777777788889999999999999999985 55678999999999999999
Q ss_pred hhchhHHHHHHHHHHHHHHHHHHHHhhccccccHHH
Q psy15227 411 SLGQHVIFFIYSSVHFCSVVFNYFYLMETKQKTLAE 446 (515)
Q Consensus 411 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (515)
+.|++..+++.++++++..++..+..++++..+.++
T Consensus 375 ~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r 410 (417)
T d1pv7a_ 375 SIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLLR 410 (417)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHHSCCSSCTTHHH
T ss_pred HHCHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhH
Confidence 999999999999988888887777776666555443
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.53 E-value=1.4e-14 Score=142.15 Aligned_cols=163 Identities=10% Similarity=-0.012 Sum_probs=131.9
Q ss_pred HHHHHHhhhcccCCCCCCcchhHHHHHHHHHHHHHHHHHHHhhhCCchhHHHhhHHHHHHHHHHHHHHHhhCCCCCCccH
Q psy15227 272 MITYSSTLLPKLDNAYFGPDQCILVFMIIMFLSNFLQAPLMDILGRKPLSCFSAALGCLLTFSTGLFYLYQGELPNFQYI 351 (515)
Q Consensus 272 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (515)
+....|. .++.|.+..+.+...+...++..++.++.|+++||+|||+.+..+.++.+++.++.+..... ..+.+.
T Consensus 44 ~~~~~p~-~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 118 (447)
T d1pw4a_ 44 FALAMPY-LVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWA----TSSIAV 118 (447)
T ss_dssp HHHHHHH-TTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHH----HSSSSH
T ss_pred HHHHHHH-HHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchh----hhhHHH
Confidence 3444454 45689999999999999999999999999999999999999999999888888777653321 234566
Q ss_pred HHHHHHHHHHHHhcccchhhhhhcccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhh-chhHHHHHHHHHHHHHHH
Q psy15227 352 PYITTLLYAASYYGIGCLPNILVSELFPINVRCQASSCASVALAFGSFITTKFHILITKSL-GQHVIFFIYSSVHFCSVV 430 (515)
Q Consensus 352 ~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~~~~~~~g~l~~~~-g~~~~~~~~~~~~~~~~~ 430 (515)
.++..++.+++.+...+....++.|.+|+++|+++.++.+....+|..++|.+.+...+.. +|+..+++.+.+.++..+
T Consensus 119 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 198 (447)
T d1pw4a_ 119 MFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVAL 198 (447)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHH
Confidence 6666777777777777888899999999999999999999999999999999888877654 677788888877777777
Q ss_pred HHHHHhhcc
Q psy15227 431 FNYFYLMET 439 (515)
Q Consensus 431 ~~~~~~~~~ 439 (515)
+.+...++.
T Consensus 199 ~~~~~~~~~ 207 (447)
T d1pw4a_ 199 FAFAMMRDT 207 (447)
T ss_dssp HHHHHCCCS
T ss_pred HHHHhcccc
Confidence 666665544
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.31 E-value=5.4e-12 Score=121.34 Aligned_cols=137 Identities=13% Similarity=0.170 Sum_probs=121.7
Q ss_pred cchhhHHHHHHHHHHHhhhhhhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHhhhhhhhcccchhh
Q psy15227 53 LNKYQLSWMVSLLDLGNAISPIFAGILVEKIGRKTTLLLNALLCLPTWFLVVSN-KIECLYIARLFIGISKGVAYTAMPI 131 (515)
Q Consensus 53 ~s~~~~~~~~s~~~lg~~i~~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~ 131 (515)
.+....+...+...++..++..+.+++.||+|+|+.+.++.++.+++.++..+. +.+.+++.-++.|++.+...+...+
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~ 335 (417)
T d1pv7a_ 256 QGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFK 335 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 677788899999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred hhhccccccccccccccc-chhhhHHHHHHHHHhhHH----HhHHHHHhhhHHHHHHHHHhhc
Q psy15227 132 FIGEISEHNIRGALGSIP-SGFQMVGTLAILLIGNHV----SYNSLNIALSILPVIFFILFSF 189 (515)
Q Consensus 132 ~i~e~~~~~~r~~~~~~~-~~~~~lG~~~~~~l~~~l----~wr~~f~i~~~~~~~~~~~~~~ 189 (515)
++.|.+|+++|+++.++. +....+|..++|.+.+.+ ||+..|++.+++.++..+...+
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 398 (417)
T d1pv7a_ 336 YITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVF 398 (417)
T ss_dssp HHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999874 566778888887776554 8999999988888776666554
|